BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780722|ref|YP_003065135.1| pilus assembly protein
[Candidatus Liberibacter asiaticus str. psy62]
         (187 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|13474664|ref|NP_106233.1| hypothetical protein mlr5603 [Mesorhizobium loti MAFF303099]
 gi|14025419|dbj|BAB52019.1| mlr5603 [Mesorhizobium loti MAFF303099]
          Length = 337

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 108/187 (57%), Positives = 144/187 (77%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     +R   FL++FPNALDIIVR+V++GLP++DAV +I  +S +PV++EFRR++++Q 
Sbjct: 151 VSFRRARRVKAFLNEFPNALDIIVRAVKSGLPLNDAVRLIANESPEPVKAEFRRIVDSQQ 210

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+S+ ++  RM   MP  E SFF  VI +QSQ GGNLSEAL NLSR+LRDRK MKAKVQ
Sbjct: 211 MGISIPDATLRMPETMPCTEASFFGIVIQIQSQAGGNLSEALGNLSRVLRDRKKMKAKVQ 270

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASA IIG+LPF V+ LVY +SP Y+  L N   G+++LG AA +M IGI+VMR
Sbjct: 271 ALSMEAKASAAIIGALPFIVAFLVYLSSPDYLMPLFNTSVGNLILGCAAVWMSIGILVMR 330

Query: 181 LMINFDV 187
            M+NF+V
Sbjct: 331 KMMNFEV 337


>gi|260461945|ref|ZP_05810190.1| type II secretion system protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259032192|gb|EEW33458.1| type II secretion system protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 337

 Score =  134 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 107/187 (57%), Positives = 144/187 (77%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     +R   FL++FPNALDIIVR+V++GLP++DAV +I  ++ +PV++EFRR++++Q 
Sbjct: 151 VSFRRSRRVKAFLNEFPNALDIIVRAVKSGLPLNDAVRLIANEAPEPVKTEFRRIVDSQQ 210

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GLS+ ++  RM   MP  E SFF  VI +QSQ GGNLSEAL NLSR+LRDRK MKAKVQ
Sbjct: 211 MGLSIPDATLRMPETMPCTEASFFGIVIQIQSQAGGNLSEALGNLSRVLRDRKKMKAKVQ 270

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASA IIG+LPF V+ LVY +SP Y+  L N   G+++LG +A +M IGI+VMR
Sbjct: 271 ALSMEAKASAAIIGALPFIVAFLVYLSSPSYLMPLFNTSVGNLILGCSAVWMSIGILVMR 330

Query: 181 LMINFDV 187
            M+NF+V
Sbjct: 331 KMMNFEV 337


>gi|302391032|ref|YP_003826852.1| type II secretion system F domain protein [Acetohalobium arabaticum
           DSM 5501]
 gi|302203109|gb|ADL11787.1| Type II secretion system F domain protein [Acetohalobium arabaticum
           DSM 5501]
          Length = 327

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 105/187 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+  KKR  KF +   ++L II  S++AG     A+ ++  +   P+  E  RV++  +
Sbjct: 141 LKYSQKKRLDKFNEQINDSLTIISNSLKAGYSFFQALEMVAKEMPPPISEEITRVLKEMN 200

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S  ++++ +   +   ++    T + +Q Q+GGNLSE L N+S  +R+R  +K ++Q
Sbjct: 201 LGASPQDALTALTDRVESDDLELVVTAVLIQRQVGGNLSEILDNISDTIRERIKIKGEIQ 260

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L+ + + S  IIG LP  +  +++  SP YM  L   P G  ++GV     ++G ++++
Sbjct: 261 TLTAQGRMSGLIIGLLPVGLGGMLFLISPDYMAPLFGHPLGQTMIGVGIISQILGAVLIK 320

Query: 181 LMINFDV 187
            +I+ +V
Sbjct: 321 KIIDIEV 327


>gi|86748903|ref|YP_485399.1| type II secretion system protein [Rhodopseudomonas palustris HaA2]
 gi|86571931|gb|ABD06488.1| type II secretion system protein [Rhodopseudomonas palustris HaA2]
          Length = 324

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 94/186 (50%), Positives = 132/186 (70%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+R  KF++  P+A+D+IVR ++AGLP+ D++ V+   S +P++SEF  +IETQ 
Sbjct: 138 LGFLKKRREKKFINALPDAVDVIVRGIKAGLPLFDSLKVVAADSPEPLKSEFNAIIETQA 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E+ +R+   MPL E +FF  VIS+Q + GGNLSEAL NLS++LRDRK M  K+Q
Sbjct: 198 IGMPLGEACARLYDRMPLPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  LVY ++P Y+ +L   P G ++L     +M  GI+VM+
Sbjct: 258 AMSMEAKASAAIIGSLPPIVMLLVYLSTPDYIALLWTHPTGRLMLAGCVVWMSAGILVMK 317

Query: 181 LMINFD 186
            MINFD
Sbjct: 318 KMINFD 323


>gi|115525753|ref|YP_782664.1| type II secretion system protein [Rhodopseudomonas palustris
           BisA53]
 gi|115519700|gb|ABJ07684.1| type II secretion system protein [Rhodopseudomonas palustris
           BisA53]
          Length = 324

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 92/186 (49%), Positives = 129/186 (69%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+R   FL   P+A+D+IVR ++AGLP+ D++ V+   + +P+R+EF  +++TQ 
Sbjct: 138 LSFLKKRRERNFLKALPDAVDVIVRGIKAGLPLYDSIKVVAADAPEPLRTEFLTILDTQA 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E+  R+   MPL E +FF  VI++Q + GGNLSEAL NLS++LRDRK M  K+Q
Sbjct: 198 IGMPLGEACGRLYERMPLPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKRMAEKIQ 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  LVY T+P Y+ +L   P G M+L     +M IG+ VM+
Sbjct: 258 AMSMEAKASAGIIGSLPPIVMFLVYLTTPDYIALLWTHPTGQMMLAGCVLWMSIGVFVMK 317

Query: 181 LMINFD 186
            MINFD
Sbjct: 318 KMINFD 323


>gi|260776711|ref|ZP_05885606.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607934|gb|EEX34199.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 322

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 63/187 (33%), Positives = 102/187 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I  R + F    P ALDI+ R ++AG PV+ A + +  +   P+  EF+      +
Sbjct: 136 LSKKISDRLSAFEGQLPEALDIMRRMLQAGQPVTQAFSEVGEEMPAPIGVEFKNTFNLLN 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  +  +I +M    P   +  FS+ + +Q + GGNLSE L  +SR+LR R  ++ K++
Sbjct: 196 YGYDMRMAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSRVLRARFKLQRKIK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E++ SAWI+   PF +   + F +PGY+  L  DPRG  L+      + IG + +R
Sbjct: 256 TLSAESRLSAWILVLSPFVLFLFLSFVNPGYVEPLYTDPRGMKLISGGVVSLFIGSLWIR 315

Query: 181 LMINFDV 187
            +INF+V
Sbjct: 316 KIINFEV 322


>gi|187927683|ref|YP_001898170.1| type II secretion system protein [Ralstonia pickettii 12J]
 gi|187724573|gb|ACD25738.1| type II secretion system protein [Ralstonia pickettii 12J]
          Length = 325

 Score =  131 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 59/187 (31%), Positives = 111/187 (59%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  K     P+A+D+I R++RAG   + A+ ++  +  +P+  EF    E  +
Sbjct: 139 IASQRRKRLKKLEAQLPDAVDMIARALRAGHSFASALGMVGQEIKEPMGPEFHTTFEEIN 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+SL E+++ + + +P+ ++ +F   + +Q + GGNL+E L  +  ++R+R  +  K++
Sbjct: 199 YGVSLDEALTNLAKRVPVNDLRYFVIAVLIQRESGGNLAEILDTIGNLVRERLKLYDKIR 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + SAWI+G LPFC + ++   +P +M VL  DP G  ++G+A   M++G++ MR
Sbjct: 259 VLSAEGRLSAWILGLLPFCTAGMILLVNPDFMKVLWTDPMGLKMIGLALFNMVMGLIWMR 318

Query: 181 LMINFDV 187
            +I   V
Sbjct: 319 KIIRIRV 325


>gi|90425201|ref|YP_533571.1| type II secretion system protein [Rhodopseudomonas palustris
           BisB18]
 gi|90107215|gb|ABD89252.1| type II secretion system protein [Rhodopseudomonas palustris
           BisB18]
          Length = 324

 Score =  131 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 92/186 (49%), Positives = 131/186 (70%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+R   FL   P+A+D+IVR ++AGLP+ D++ V+   + +P++SEF  ++ETQ 
Sbjct: 138 LNFLKKRREKNFLKALPDAVDVIVRGIKAGLPLFDSLKVVAADAPEPLKSEFLAILETQA 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E+ +R+   MPL E +FF  VI++Q + GGNLSEAL NLS++LRDRK M  K+Q
Sbjct: 198 IGMPLGEACARLYERMPLPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKRMAEKIQ 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  LVY ++P Y+++L   P G ++L     +M IGI VM+
Sbjct: 258 AMSMEAKASAGIIGSLPPIVMLLVYLSTPDYISLLWTHPTGQLMLAGCVLWMAIGIFVMK 317

Query: 181 LMINFD 186
            MINFD
Sbjct: 318 QMINFD 323


>gi|222147178|ref|YP_002548135.1| component of type IV pilus [Agrobacterium vitis S4]
 gi|221734168|gb|ACM35131.1| component of type IV pilus [Agrobacterium vitis S4]
          Length = 334

 Score =  131 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 113/187 (60%), Positives = 152/187 (81%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  LI++R  KFL +FPNALD++VRS+++GLP++DA+ +I   + +PV++EFRRV++ Q 
Sbjct: 148 VSFLIRRRQEKFLTEFPNALDVMVRSIKSGLPLNDALRMIAVDAQEPVKTEFRRVVDAQQ 207

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+++ E+  RM   MPLQEVSFF+ VI++QSQ GGNLSEAL+NLS++LR+R+ MKAKV 
Sbjct: 208 LGITVPEACGRMFNSMPLQEVSFFAIVIAIQSQAGGNLSEALSNLSKVLRERRKMKAKVS 267

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASA IIG+LPF V+ LVY +SP Y+ VL  DPRGHM+LG +A +M IGI VMR
Sbjct: 268 ALSMEAKASAVIIGALPFIVAFLVYISSPAYIMVLFTDPRGHMILGFSAFWMSIGIFVMR 327

Query: 181 LMINFDV 187
            MINFD+
Sbjct: 328 NMINFDI 334


>gi|319785604|ref|YP_004145080.1| type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317171492|gb|ADV15030.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 337

 Score =  131 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 107/187 (57%), Positives = 143/187 (76%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     +R   FL++FPNALDIIVR+V++GLP++DAV +I  +S +PV++EFRR++++Q 
Sbjct: 151 VTFRRARRVKAFLNEFPNALDIIVRAVKSGLPLNDAVRLIANESPEPVKTEFRRIVDSQQ 210

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GLS+ ++  RM   MP  E SFF  VI +QSQ GGNLSEAL NLSR+LRDRK MKAKV 
Sbjct: 211 MGLSIPDATLRMPETMPCTEASFFGIVIQIQSQAGGNLSEALGNLSRVLRDRKKMKAKVA 270

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASA IIG+LPF V+ LVY +SP Y+  L N   G+++LG +A +M IGI+VMR
Sbjct: 271 ALSMEAKASAAIIGALPFIVAFLVYLSSPAYLMPLFNTSVGNLILGCSAVWMSIGILVMR 330

Query: 181 LMINFDV 187
            M+NF+V
Sbjct: 331 KMMNFEV 337


>gi|315121887|ref|YP_004062376.1| pilus assembly protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495289|gb|ADR51888.1| pilus assembly protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 328

 Score =  131 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 142/187 (75%), Positives = 174/187 (93%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++LIKKRTAKFL++FPNALDIIVRSVR+GLPVSDA+++IVGQSSDPVRSEFRRV+E QH
Sbjct: 142 LQYLIKKRTAKFLNEFPNALDIIVRSVRSGLPVSDAISIIVGQSSDPVRSEFRRVVEAQH 201

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGLS+SES++RMVRYMPLQEVSFFSTVIS+Q+Q GGNLSEAL+NLS ILR+RK MK KVQ
Sbjct: 202 LGLSVSESVARMVRYMPLQEVSFFSTVISIQAQSGGNLSEALSNLSGILRERKKMKGKVQ 261

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+MEAK+SAWIIGSLPF VS+LV+FTSPGY+++L  D RGH++LG+AA  M++G ++MR
Sbjct: 262 ALAMEAKSSAWIIGSLPFFVSSLVHFTSPGYIDILFLDSRGHIILGIAAFLMVLGAVIMR 321

Query: 181 LMINFDV 187
            MINFD+
Sbjct: 322 TMINFDM 328


>gi|148258239|ref|YP_001242824.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1]
 gi|146410412|gb|ABQ38918.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1]
          Length = 324

 Score =  130 bits (327), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 92/186 (49%), Positives = 132/186 (70%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+R  KFL   P+A+D+IVR ++AGLP+ +++ V+   + +P+RSEF  +IETQ 
Sbjct: 138 LNFLKKRREKKFLAALPDAVDVIVRGIKAGLPLFESIKVVAADAPEPLRSEFLAIIETQA 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E+ +R+   MPL E +FF  V+++Q + GGNLSEAL NLS++LRDRK M  K+Q
Sbjct: 198 IGMPLGEACARLYERMPLPEANFFGIVVAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  LVY ++P Y+++L   P G ++L     +M +GI VM+
Sbjct: 258 AMSMEAKASAGIIGSLPPIVMLLVYLSTPDYISLLWTHPTGQLMLVGCVVWMSMGIFVMK 317

Query: 181 LMINFD 186
            MINFD
Sbjct: 318 KMINFD 323


>gi|222084473|ref|YP_002543002.1| pilus assembly protein [Agrobacterium radiobacter K84]
 gi|221721921|gb|ACM25077.1| pilus assembly protein [Agrobacterium radiobacter K84]
          Length = 335

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 111/187 (59%), Positives = 154/187 (82%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  LIK+R  KFL++FPNALD+I RS+R+GLP++DAV ++  ++ +PVR+EFRRV+ETQ 
Sbjct: 149 VGFLIKRRQNKFLEEFPNALDLITRSIRSGLPLNDAVRLVASEAREPVRTEFRRVVETQQ 208

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GLS++++ +RM  +MPLQEV+FFS VI++Q+Q GGNLSEAL NL+++LR+RK MKAKV 
Sbjct: 209 VGLSMTDACARMNNHMPLQEVNFFSIVIAIQAQAGGNLSEALGNLAKVLRERKKMKAKVV 268

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASA IIG+LPF V  LVY TSP YM +L  DPRGH+++ +A  +M  G+++MR
Sbjct: 269 ALSMEAKASAVIIGALPFIVMLLVYLTSPQYMMILFTDPRGHLIMLLAGIWMAFGVIIMR 328

Query: 181 LMINFDV 187
            M+NFD+
Sbjct: 329 QMVNFDI 335


>gi|21673274|ref|NP_661339.1| TadB protein [Chlorobium tepidum TLS]
 gi|21646363|gb|AAM71681.1| tadB protein [Chlorobium tepidum TLS]
          Length = 305

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 65/187 (34%), Positives = 107/187 (57%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR   F    P ALD I RS+RAG  +S A+ +I  +  DP+  EF+ V +  +
Sbjct: 119 LSRKAKKRRMAFEAKLPEALDYISRSLRAGHSLSSAIGMIGKEFPDPLGGEFKTVFDEMN 178

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+   E+ + +   +   ++SFF   + +Q + GGNL+E L  L+  +R+R  ++ KV+
Sbjct: 179 FGIPFKEAFAHLSNRIRSNDISFFVIALMIQHETGGNLAELLGGLATTIRERFKLRGKVR 238

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + SA ++GS+PF  +T++   +P Y+  L N P+GH LL +A   ML+G+ V+ 
Sbjct: 239 TLSSEGRISALVLGSMPFVFATIISLINPRYILPLFNTPQGHTLLYIAGGLMLVGMYVLN 298

Query: 181 LMINFDV 187
            M+   V
Sbjct: 299 NMVKIKV 305


>gi|84498180|ref|ZP_00996977.1| putative membrane protein [Janibacter sp. HTCC2649]
 gi|84381680|gb|EAP97563.1| putative membrane protein [Janibacter sp. HTCC2649]
          Length = 654

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 101/187 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ L  +R  KF    P+ L ++  ++ +G  ++ A+  +   S+ P   EF R +    
Sbjct: 468 LRMLAGRRAKKFEQMLPDILMLVATTLASGFSLTQALDAVARDSAQPAGKEFSRTLAETR 527

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G  +S+++  M   M  + + + +  I +Q  +GGNL++ L   +  LR+R+++K +V 
Sbjct: 528 IGADVSDALENMSVRMDSEAMRWTTMAIRIQRDVGGNLADTLRTTAHTLRERESLKRQVN 587

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           +LS E + SA+I+  LP  +   + +++P Y ++L     G ++L  +   M+IG + MR
Sbjct: 588 SLSAEGRLSAYILLGLPILLFVYMAWSNPAYTSLLWTRTVGILMLLGSGVSMVIGTLWMR 647

Query: 181 LMINFDV 187
            +I  +V
Sbjct: 648 KVIQIEV 654


>gi|145219379|ref|YP_001130088.1| type II secretion system protein [Prosthecochloris vibrioformis DSM
           265]
 gi|145205543|gb|ABP36586.1| type II secretion system protein [Chlorobium phaeovibrioides DSM
           265]
          Length = 322

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 107/187 (57%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L  +R   F D  P ALD I R++RAG  ++ A+ ++  +  DP+  EF+ V +   
Sbjct: 136 LLKLADRRRRAFEDKLPEALDHISRALRAGHSLAPAMGMVGQEFGDPIGYEFKIVFDEIG 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+   E+I R+   +   +++FF   +++Q + GGNL+E    L+R +R R  ++ K++
Sbjct: 196 FGIPFKEAIGRLAERVQSNDLNFFVISLTIQHETGGNLTELFDGLARTIRHRIKLRGKIR 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E +AS W++GS+PF +  ++   +P Y+  L   P+G+ ++ + A  M +G +V++
Sbjct: 256 ILSSEGRASGWVLGSMPFVLMAVLSLINPEYIAQLWTTPQGNTMMMIGAGLMSVGFVVLK 315

Query: 181 LMINFDV 187
            ++   V
Sbjct: 316 RIVQIKV 322


>gi|114705451|ref|ZP_01438359.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506]
 gi|114540236|gb|EAU43356.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506]
          Length = 335

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 98/187 (52%), Positives = 146/187 (78%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +  KKR   F + FP A+D+IVR V+AGLP++D +  +V    DPV SEF++V+E Q 
Sbjct: 149 LSNRRKKRINDFSNSFPTAIDLIVRGVKAGLPLNDTLRTVVSDVPDPVSSEFQKVVEAQQ 208

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G++L ++  R+ + +PL E +FF+ VI++QSQ GGNLSEAL NLSR+LR+RK M+ K+Q
Sbjct: 209 MGVTLGDACDRLYKQVPLPETNFFAIVIAIQSQAGGNLSEALGNLSRVLRERKKMRQKIQ 268

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGS+P  V++++Y TSP Y+NVL++DPRG+++L  +A +MLIG+++M+
Sbjct: 269 AVSMEAKASASIIGSIPVLVASMIYMTSPDYLNVLLHDPRGNIVLIASAVWMLIGVLIMK 328

Query: 181 LMINFDV 187
            MINFD+
Sbjct: 329 KMINFDI 335


>gi|299132290|ref|ZP_07025485.1| Type II secretion system F domain protein [Afipia sp. 1NLS2]
 gi|298592427|gb|EFI52627.1| Type II secretion system F domain protein [Afipia sp. 1NLS2]
          Length = 323

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 97/186 (52%), Positives = 136/186 (73%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L ++R  +FL+  P+A+D+IVR V+AGLP+ D++ V+V  S +P+RSEFR +IETQ 
Sbjct: 137 LSYLKRRREKQFLEALPDAVDVIVRGVKAGLPLFDSLKVVVNDSPEPLRSEFRAIIETQS 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E+  R+   MPL E +FF  VI +Q++ GGNLSEAL NLS++LRDRK M+AK+Q
Sbjct: 197 IGMPLGEACMRLYERMPLPEANFFGIVIGIQTKSGGNLSEALGNLSKVLRDRKKMRAKIQ 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIG+LP  V  +VY  SP Y+++L   P G  +L   A +M  GI+VM+
Sbjct: 257 AMSMEAKASAAIIGALPPVVMIIVYIMSPDYISLLWTHPTGRFMLACCAVWMTAGILVMK 316

Query: 181 LMINFD 186
            MINFD
Sbjct: 317 KMINFD 322


>gi|261252091|ref|ZP_05944664.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
 gi|260935482|gb|EEX91471.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
          Length = 322

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 62/187 (33%), Positives = 102/187 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I  R A F +  P ALDI+ R ++AG PV+ A   +  +   P+  EF+ +    +
Sbjct: 136 LGKKISDRLAAFEEQLPEALDIMRRMLQAGQPVTQAFNEVGLEMPAPIGVEFKNMFNLLN 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  +  +I +M    P   +  FS+ + +Q + GGNLSE L  +S++LR R  ++ K++
Sbjct: 196 YGYDMRMAIMQMAERTPTVSMLAFSSAVILQKETGGNLSENLEKVSKVLRSRFKLQRKIK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E++ SAWI+   PF +   +   +PGY+  L  DPRG  L+      + IG + +R
Sbjct: 256 TLSAESRLSAWILVLSPFVLFLFLSVINPGYVEPLYTDPRGMKLVSGGVVSLFIGSLWIR 315

Query: 181 LMINFDV 187
            +INF+V
Sbjct: 316 KIINFEV 322


>gi|209886534|ref|YP_002290391.1| type II secretion system protein [Oligotropha carboxidovorans OM5]
 gi|209874730|gb|ACI94526.1| type II secretion system protein [Oligotropha carboxidovorans OM5]
          Length = 325

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 102/186 (54%), Positives = 139/186 (74%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+R  KFLD  P+A+D+IVR V+AGLP+ D++ V+V  S +P+RSEFR +IETQ 
Sbjct: 139 LNFLKKRREKKFLDALPDAVDVIVRGVKAGLPLFDSLKVVVNDSPEPLRSEFRAIIETQS 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E+  R+   MPL E +FF  V+ +Q + GGNLSEAL NLS++LRDRK MKAK+Q
Sbjct: 199 IGMPLGEACMRLYERMPLPEANFFGIVVGIQMKSGGNLSEALGNLSKVLRDRKKMKAKIQ 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  +VYF SP Y+++L  +P G ++L V+ A+M  G+M+M+
Sbjct: 259 AMSMEAKASAGIIGSLPPAVMMIVYFMSPDYISLLWTEPAGRVMLAVSGAWMFAGVMIMK 318

Query: 181 LMINFD 186
            MINFD
Sbjct: 319 KMINFD 324


>gi|90419768|ref|ZP_01227677.1| putative Flp pilus assembly protein TadB, type II/IV secretion
           system [Aurantimonas manganoxydans SI85-9A1]
 gi|90335809|gb|EAS49557.1| putative Flp pilus assembly protein TadB, type II/IV secretion
           system [Aurantimonas manganoxydans SI85-9A1]
          Length = 335

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 98/186 (52%), Positives = 142/186 (76%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR  KF ++FPNA+D+IVR V++GLP++D + ++ G++ DPVRSEFR++IE+Q 
Sbjct: 149 LSRARKKRFHKFGEEFPNAIDLIVRGVKSGLPLNDTLRIVSGETLDPVRSEFRKIIESQQ 208

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ +SE++ ++ R +P  E +FF+ VI++QSQ GGNLSEAL NLS +LRDRK M+AKVQ
Sbjct: 209 MGVPISEAVEKLYRNIPTPEANFFAIVIAIQSQAGGNLSEALGNLSNVLRDRKKMRAKVQ 268

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKAS  IIG+LP  V+ LVY T+P Y++VL     GH++L V+  +M  G+ VM+
Sbjct: 269 AMSMEAKASGGIIGALPVVVAGLVYITTPDYISVLFTTGTGHLILAVSGLWMATGVFVMK 328

Query: 181 LMINFD 186
            MI+FD
Sbjct: 329 KMISFD 334


>gi|316933035|ref|YP_004108017.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1]
 gi|315600749|gb|ADU43284.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1]
          Length = 324

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 94/186 (50%), Positives = 135/186 (72%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L ++R  KFL   P+A+D+IVR ++AGLP+ D++ V+   + +P+RSEF  +IETQ 
Sbjct: 138 LGFLKRRREKKFLAALPDAVDVIVRGIKAGLPLFDSIKVVAADAPEPLRSEFNAIIETQA 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L+++ +R+   MPL E +FF  VI++Q + GGNLSEAL+NLS++LRDRK M  K+Q
Sbjct: 198 IGMPLADACARLYERMPLPEANFFGIVIAIQQKSGGNLSEALSNLSKVLRDRKKMAEKIQ 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIG+LP  V  LVY T+P Y+++L   P G +LL  +A +M  GI VM+
Sbjct: 258 AMSMEAKASATIIGALPLIVMLLVYLTTPDYISLLWTHPTGRLLLAGSALWMSAGIFVMK 317

Query: 181 LMINFD 186
            MINFD
Sbjct: 318 KMINFD 323


>gi|146338119|ref|YP_001203167.1| putative pilus assembly protein membrane protein [Bradyrhizobium
           sp. ORS278]
 gi|146190925|emb|CAL74930.1| putative pilus assembly protein; putative membrane protein
           [Bradyrhizobium sp. ORS278]
          Length = 324

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 93/186 (50%), Positives = 134/186 (72%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L K+R  KFL   P+A+D+IVR ++AGLP+ +++ V+   + +P+RSEF  +IETQ 
Sbjct: 138 LGYLKKRREKKFLAALPDAVDVIVRGIKAGLPLFESIKVVAADAPEPLRSEFLAIIETQA 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E+ +R+   MPL E +FF  VI++Q + GGNLSEAL NLS++LRDRK M  K+Q
Sbjct: 198 IGMPLGEACARLYERMPLPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  LVY ++P Y+++L   P G ++L     +M +GI+VM+
Sbjct: 258 AMSMEAKASAGIIGSLPPIVMLLVYLSTPDYISLLWTHPTGQLMLVGCVVWMSMGILVMK 317

Query: 181 LMINFD 186
            MINFD
Sbjct: 318 KMINFD 323


>gi|154250693|ref|YP_001411517.1| type II secretion system protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154154643|gb|ABS61860.1| type II secretion system protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 328

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 91/186 (48%), Positives = 140/186 (75%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +LIK+R   F ++F NA+D+IVR V++GLPV+D + +I  +S +PVR+EF+ ++E Q 
Sbjct: 142 LSYLIKRRQKAFTEEFANAIDVIVRGVKSGLPVNDCLKLIATESPEPVRTEFQGIVEGQR 201

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G++L + ++++   MPL EV+FF  V+++Q + GGNLSEAL NLS++LR+RK M+ K+Q
Sbjct: 202 VGVTLEQGLAKIYERMPLPEVNFFQIVLAIQQKTGGNLSEALGNLSKVLRERKKMRGKIQ 261

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S EAKASA IIGSLP  V  L+YF+SPGYM+VL +   G+M++     +M IG++VM+
Sbjct: 262 AMSQEAKASAGIIGSLPPGVMLLIYFSSPGYMDVLFSTTAGNMIIVGGIMWMAIGVLVMK 321

Query: 181 LMINFD 186
            MI+F 
Sbjct: 322 KMIDFK 327


>gi|153008063|ref|YP_001369278.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188]
 gi|151559951|gb|ABS13449.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188]
          Length = 337

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 108/185 (58%), Positives = 141/185 (76%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
              K+R  KFL++FPNALD+IVR+ RAGLP++D + +I  ++ +PV+SEF++V+E Q +G
Sbjct: 153 QKRKRRLKKFLEEFPNALDVIVRATRAGLPLNDGLRLIASEAVEPVKSEFKKVVEAQQIG 212

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           LS+ E++ +M   MP  E +FF+ VI +Q+Q GGNLSEAL NLS++LRDRK MKAKV AL
Sbjct: 213 LSIPEAVGKMPDSMPCPETNFFAIVIQIQAQAGGNLSEALNNLSKVLRDRKKMKAKVDAL 272

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           SMEAKASA IIG+LPF V  LVY TSP YM +L     GHMLLG+AA  ML GI +M+ M
Sbjct: 273 SMEAKASAAIIGALPFIVMVLVYLTSPQYMTLLFTSSTGHMLLGIAAVLMLTGIFIMKNM 332

Query: 183 INFDV 187
           INFD+
Sbjct: 333 INFDM 337


>gi|39936744|ref|NP_949020.1| type II secretion system protein [Rhodopseudomonas palustris
           CGA009]
 gi|39650600|emb|CAE29123.1| conserved unknown protein [Rhodopseudomonas palustris CGA009]
          Length = 324

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 96/186 (51%), Positives = 134/186 (72%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L ++R  KFL   P+A+DIIVR ++AGLP+ D++ ++   S +P+RSEF  +IETQ 
Sbjct: 138 LGYLKRRREKKFLAALPDAVDIIVRGIKAGLPLFDSIKMVAADSPEPLRSEFNAIIETQA 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ + E+ +R+   MP+ E +FF  VIS+Q + GGNLSEAL NLS++LRDRK M  K+Q
Sbjct: 198 IGMPIGEACARLYERMPIPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  LVY T+P Y+++L   P G +LL  +A +M  GI VM+
Sbjct: 258 AMSMEAKASAAIIGSLPIIVMMLVYVTTPDYISLLWTHPTGRILLAASALWMSAGIFVMK 317

Query: 181 LMINFD 186
            MINFD
Sbjct: 318 KMINFD 323


>gi|150398545|ref|YP_001329012.1| type II secretion system protein [Sinorhizobium medicae WSM419]
 gi|150030060|gb|ABR62177.1| type II secretion system protein [Sinorhizobium medicae WSM419]
          Length = 336

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 111/187 (59%), Positives = 153/187 (81%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   IK+R  KFLD+FPNALD++VRS+++GLP++DA+ +I     +PVR+EFRRV+E+Q 
Sbjct: 150 VGSRIKRRCRKFLDEFPNALDVMVRSIKSGLPLNDALRLIASDGQEPVRTEFRRVVESQQ 209

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GL++ E+ +RM+  +PL EV+FF+ VI++Q+Q GGNLSEAL NLS++LR+R+ MKAKV 
Sbjct: 210 VGLNVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVN 269

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASA IIG+LPF V+TLVY TSP YM +L  DPRGH+++G +A +M IGI +MR
Sbjct: 270 ALSMEAKASACIIGALPFIVATLVYLTSPAYMAILFTDPRGHLIMGASAVWMSIGIWMMR 329

Query: 181 LMINFDV 187
            MINFD+
Sbjct: 330 NMINFDI 336


>gi|260771471|ref|ZP_05880396.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972]
 gi|260613597|gb|EEX38791.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972]
          Length = 321

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 60/187 (32%), Positives = 104/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  I  R +KF +  P+ALDII R ++AG P++ +   +  +   P+  EF+      +
Sbjct: 135 LQKKISDRLSKFEEQLPDALDIIRRMLQAGQPLTQSFNEVGNEMPAPIGVEFKNTFNLLN 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L  +I +M    P   +  FS+ + +Q + GGNLSE L  +S++LR R  +  K++
Sbjct: 195 YGYDLRLAIMQMADRTPTVSMLAFSSAVLLQKETGGNLSENLDKVSKVLRARFKLARKIK 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +S E++ SAWI+   PF +  ++    PGY++ L  DPRG  ++      + +G + MR
Sbjct: 255 TISAESRMSAWILVLSPFVLFIVMSLIHPGYVSPLYEDPRGVGVISYGIVSLFLGSLWMR 314

Query: 181 LMINFDV 187
            +INF+V
Sbjct: 315 HIINFEV 321


>gi|193213110|ref|YP_001999063.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327]
 gi|193086587|gb|ACF11863.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327]
          Length = 322

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 104/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR   F +  P ALD + RS+RAG  ++ A+ ++  +   P+  EF+ V +   
Sbjct: 136 LSRQANKRRQAFSEKLPEALDYVTRSLRAGHSLTSAIGIVGKEFPGPIGQEFKIVFDEIS 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+   E++ R+   +   +++FF   + +Q + GGNL+E L  L++ +R+R  ++ KV+
Sbjct: 196 FGIPFKEAMDRLADRVESVDLNFFVISLEIQHETGGNLTELLEGLAKTIRERFKLRGKVR 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + SA ++GS+PF ++ ++   +P Y +VL + P+GH L+ V A  M +G   + 
Sbjct: 256 TLSAEGRISALVLGSMPFILTAILTVINPEYTSVLWSTPQGHTLIMVMAVLMALGFFSLN 315

Query: 181 LMINFDV 187
            +    V
Sbjct: 316 RISQIKV 322


>gi|27376546|ref|NP_768075.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
 gi|27349687|dbj|BAC46700.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
          Length = 340

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 98/186 (52%), Positives = 135/186 (72%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+R +KFL   P+A+D+IVR ++AGLP+ +++ V+   S +P+RSEF  +IETQ 
Sbjct: 154 LSFLKKRRESKFLAALPDAVDVIVRGIKAGLPLFESIKVVAADSPEPLRSEFLAIIETQA 213

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E+ SR+   MPL E +FF  VIS+Q + GGNLSEAL NLS++LRDRK M+ K+Q
Sbjct: 214 IGMPLGEACSRLYDRMPLPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMREKIQ 273

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  LVY T+P Y+++L   P G ++L     +M +GIMVM+
Sbjct: 274 AMSMEAKASAAIIGSLPPIVMFLVYLTTPHYISLLWTHPTGQLMLVGCVVWMSVGIMVMK 333

Query: 181 LMINFD 186
            MINFD
Sbjct: 334 KMINFD 339


>gi|192292570|ref|YP_001993175.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1]
 gi|192286319|gb|ACF02700.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1]
          Length = 324

 Score =  128 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 95/186 (51%), Positives = 134/186 (72%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L ++R  +FL   P+A+DIIVR ++AGLP+ D++ ++   S +P+RSEF  +IETQ 
Sbjct: 138 LGYLKRRREKRFLAALPDAVDIIVRGIKAGLPLFDSIKMVAADSPEPLRSEFNAIIETQA 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ + E+ +R+   MP+ E +FF  VIS+Q + GGNLSEAL NLS++LRDRK M  K+Q
Sbjct: 198 IGMPIGEACARLYERMPIPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  LVY T+P Y+++L   P G +LL  +A +M  GI VM+
Sbjct: 258 AMSMEAKASAAIIGSLPIIVMMLVYVTTPDYISLLWTHPTGRILLAASALWMSAGIFVMK 317

Query: 181 LMINFD 186
            MINFD
Sbjct: 318 KMINFD 323


>gi|239833233|ref|ZP_04681562.1| type II secretion system protein [Ochrobactrum intermedium LMG
           3301]
 gi|239825500|gb|EEQ97068.1| type II secretion system protein [Ochrobactrum intermedium LMG
           3301]
          Length = 336

 Score =  128 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 110/185 (59%), Positives = 142/185 (76%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           H  K+R  KFL++FPNALD+IVR+ RAGLP++D + +I  ++ +PV+SEF++V+E Q +G
Sbjct: 152 HRRKQRLKKFLEEFPNALDVIVRATRAGLPLNDGLRLIASEAVEPVKSEFKKVVEAQQIG 211

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           LS+ E++ +M   MP  E +FF+ VI +Q+Q GGNLSEAL NLS++LRDRK MKAKV AL
Sbjct: 212 LSIPEAVGKMPDSMPCPETNFFAIVIQIQAQAGGNLSEALNNLSKVLRDRKKMKAKVNAL 271

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           SMEAKASA IIG+LPF V  LVY TSP YM +L     GHMLLGVAA  ML GI +M+ M
Sbjct: 272 SMEAKASAAIIGALPFIVMVLVYLTSPLYMTLLFTSSTGHMLLGVAAVLMLTGIFIMKNM 331

Query: 183 INFDV 187
           INFD+
Sbjct: 332 INFDM 336


>gi|323137429|ref|ZP_08072507.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242]
 gi|322397416|gb|EFX99939.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242]
          Length = 326

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 99/187 (52%), Positives = 135/187 (72%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+R +KF+++FP ++D+I+R V+AGLPV+D   VI  +  +PVR EFRR+IE+Q 
Sbjct: 140 LSFLRKRRISKFIEEFPGSIDVIIRGVKAGLPVADCFRVIASEGQEPVRGEFRRIIESQA 199

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GLS+ E++ R    +P+ E SFFS VI++Q + GGNLSEAL NLSR+LRDRK MK KV+
Sbjct: 200 IGLSVGEAVERFAERVPVPEASFFSIVINIQQKSGGNLSEALGNLSRVLRDRKKMKGKVK 259

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S EAKASA IIGSLPF V   VY T+P YM VL     G +++     +M IG+ +MR
Sbjct: 260 AMSSEAKASAGIIGSLPFLVGGAVYLTTPSYMMVLFTTNIGKIIIACGLLWMAIGVFIMR 319

Query: 181 LMINFDV 187
            MINFD+
Sbjct: 320 KMINFDI 326


>gi|194335918|ref|YP_002017712.1| type II secretion system protein [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194308395|gb|ACF43095.1| type II secretion system protein [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 332

 Score =  127 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 59/187 (31%), Positives = 109/187 (58%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    K+R   F D  P ALD I R++RAG  ++ A+ ++  +  DP+  EF+ V +   
Sbjct: 146 LLRQAKQRRKVFGDKLPEALDYISRAMRAGHSLTSAIGMVGKELPDPIGYEFKTVFDEIS 205

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+   ++I  +   +   +++FF   + +Q + GGNL+E L  L++ +R+R  ++ KV+
Sbjct: 206 FGIPFKDAIGHLADRIQSNDLNFFVISLKIQHETGGNLAELLHGLAKTIRERVKLRGKVR 265

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E +ASAWI+G++PF  + ++   +PGY++VL + P+G  L+ +    M +GI V+ 
Sbjct: 266 TLSSEGRASAWILGTMPFVFAGILMLINPGYISVLWSTPQGQNLMFIGCGLMAVGIFVLS 325

Query: 181 LMINFDV 187
            ++   V
Sbjct: 326 RIVQIKV 332


>gi|328953759|ref|YP_004371093.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
           DSM 11109]
 gi|328454083|gb|AEB09912.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
           DSM 11109]
          Length = 339

 Score =  127 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 106/187 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    K R  KF    P AL ++ RS++AG      + ++  +  +P+  EF +  +  +
Sbjct: 153 LHMKKKYRLKKFEKQLPEALGLMARSLKAGHSFPSTMQLVADEMPNPIGIEFFKTFKEFN 212

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            GL +S +++ + + + LQ++ FF T I++Q + GGNL E L  ++ ++RDR  +   ++
Sbjct: 213 YGLDMSSALANLQKRIDLQDLKFFVTAINIQRETGGNLVEILEKIASLIRDRFKLVNHIK 272

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + S  I+  LP  ++ ++YF +  YM +LI  P G M++GVA    L+G +++ 
Sbjct: 273 AITSEGRFSGLILTCLPPGMAIILYFLNKKYMLLLITHPWGKMMVGVALTMQLLGYLMIH 332

Query: 181 LMINFDV 187
            ++N  V
Sbjct: 333 KIVNIKV 339


>gi|315497461|ref|YP_004086265.1| type II secretion system f domain protein [Asticcacaulis
           excentricus CB 48]
 gi|315415473|gb|ADU12114.1| Type II secretion system F domain protein [Asticcacaulis
           excentricus CB 48]
          Length = 326

 Score =  127 bits (318), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 87/186 (46%), Positives = 125/186 (67%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+RT KF  +F +A+DI+VR +++GLPV D + +I  +   P+  EF+R+ E   
Sbjct: 140 LSFLAKRRTTKFTANFADAIDILVRGIKSGLPVHDGLKIIAKELPAPLGPEFQRLNENIS 199

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L  S+ +M   MP  E+ FF+ VI++Q + GGNL+EAL NLS +LR R+ M+ K++
Sbjct: 200 IGMGLDMSLEKMCERMPTPELRFFTIVIAIQQKTGGNLAEALGNLSHVLRSRRMMREKIK 259

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS EA ASA IIG LP  V  ++Y T+PGYM  L+ DPRG+ +L   A +ML GI +MR
Sbjct: 260 ALSSEAIASASIIGVLPPGVGIMIYITNPGYMGPLLTDPRGNFMLLGGAVWMLCGIFMMR 319

Query: 181 LMINFD 186
            MINF 
Sbjct: 320 KMINFK 325


>gi|91977989|ref|YP_570648.1| type II secretion system protein [Rhodopseudomonas palustris BisB5]
 gi|91684445|gb|ABE40747.1| type II secretion system protein [Rhodopseudomonas palustris BisB5]
          Length = 324

 Score =  127 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 90/186 (48%), Positives = 132/186 (70%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+R  +FL+  P+A+D+IVR ++AGLP+ D++ V+   S +P+++EF  +IETQ 
Sbjct: 138 LGFLKKRREKRFLNALPDAVDVIVRGIKAGLPLFDSIKVVAADSPEPLKTEFNAIIETQT 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ + E+ +R+   MP+ E +FF  VI++Q + GGNLSEAL NLS++LRDRK M  K+Q
Sbjct: 198 IGMPIGEACARLYDRMPVPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKRMAEKIQ 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  LVY ++P Y+ +L   P G ++L     +M  GI+VM+
Sbjct: 258 AMSMEAKASAAIIGSLPPIVMLLVYMSTPDYIALLWTHPTGRLMLAGCVVWMAAGILVMK 317

Query: 181 LMINFD 186
            MINFD
Sbjct: 318 KMINFD 323


>gi|218516696|ref|ZP_03513536.1| probable pilus assembly protein [Rhizobium etli 8C-3]
          Length = 335

 Score =  127 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 113/187 (60%), Positives = 155/187 (82%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  LIK+R  KFL++ PNALD+I RS+++GLP++DA+ +I  + ++PV+SEFRRVIE Q 
Sbjct: 149 LGFLIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIGTEGTEPVKSEFRRVIEAQQ 208

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GLS+ ++ +RM  +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV 
Sbjct: 209 VGLSIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVS 268

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASA IIG+LPF V+TLVY TSP YM +L  DPRGH+++G++A +M IGI VMR
Sbjct: 269 ALSMEAKASAVIIGALPFIVATLVYLTSPNYMMILFTDPRGHLIMGISAVWMSIGIFVMR 328

Query: 181 LMINFDV 187
            M+NFD+
Sbjct: 329 NMVNFDI 335


>gi|322434107|ref|YP_004216319.1| Type II secretion system F domain protein [Acidobacterium sp.
           MP5ACTX9]
 gi|321161834|gb|ADW67539.1| Type II secretion system F domain protein [Acidobacterium sp.
           MP5ACTX9]
          Length = 320

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 112/187 (59%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K     R  KF +  P+A+D++ R++RAG  +S A+ V+  +S++P+  EF  V + Q 
Sbjct: 134 LKWKKSSRLGKFEEALPDAIDLMARALRAGHAMSSAIEVVAEESAEPLAGEFAIVFQQQK 193

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            GL   +++ ++   +P +++SF  T I VQ + GG+L++ L   +R++R+R  ++ +++
Sbjct: 194 FGLQFRDALLQLGDRVPSKDLSFLITAILVQKETGGDLTDVLDRTTRVIRERIRIQGEIR 253

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             + + + + WI+ +LP  +  L+   +PGY ++L +DP G +LLG     +LIG  ++ 
Sbjct: 254 TYTAQGRLTGWILSALPVVMLCLINVATPGYSHILFHDPTGQLLLGAGGVLILIGGFIIS 313

Query: 181 LMINFDV 187
            +++  V
Sbjct: 314 RVVDIKV 320


>gi|194288829|ref|YP_002004736.1| tad secretion system, secretion accessory protein [Cupriavidus
           taiwanensis LMG 19424]
 gi|193222664|emb|CAQ68667.1| Tad secretion system, secretion accessory protein [Cupriavidus
           taiwanensis LMG 19424]
          Length = 325

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/185 (33%), Positives = 109/185 (58%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           HL  KR  +     P+A+D+I R++RAG   S A++++  +   P+  EFR   E  + G
Sbjct: 141 HLRAKRLKQLEAQLPDAVDMISRALRAGHSFSGALSMVGQEMKAPIGPEFRTTFEEINYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           ++L E+++ +   +P+ ++ +F   + +Q + GGNL+E L  +  ++R+R  +  K++ L
Sbjct: 201 VALDEAMTNLAMRVPVADLRYFVIAVLIQRESGGNLAEILDTIGTMVRERLKLFDKIRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E K SAW++G LPF  + ++   +PG+MNVL  DP G  ++G A   M  G++ MR +
Sbjct: 261 SAEGKLSAWVLGLLPFGTAGMILVINPGFMNVLWEDPLGLRMIGGALVSMTFGVLWMRKI 320

Query: 183 INFDV 187
           I   V
Sbjct: 321 IRIRV 325


>gi|227823975|ref|YP_002827948.1| putative type II/IV secretion system protein TadB, Flp pilus
           assembly protein TadB [Sinorhizobium fredii NGR234]
 gi|227342977|gb|ACP27195.1| putative type II/IV secretion system protein TadB, Flp pilus
           assembly protein TadB [Sinorhizobium fredii NGR234]
          Length = 336

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 111/184 (60%), Positives = 154/184 (83%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           ++K+R  KFLD+FPNALD++VRS+++GLP++DA+ +I     +PV++EFRRV+E+Q +GL
Sbjct: 153 MVKRRCKKFLDEFPNALDVMVRSIKSGLPLNDALRLIASDGQEPVKTEFRRVVESQQVGL 212

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           ++ ++ +RM++ +PL EV+FF+ VI++Q+Q GGNLSEAL NLS++LR+RK MKAKV ALS
Sbjct: 213 NVPDACARMIQSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERKKMKAKVGALS 272

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           MEAKASA IIG+LPF V+TLVY TSP YM VL  DPRGH+++G +A +M IGI VMR MI
Sbjct: 273 MEAKASACIIGALPFIVATLVYLTSPEYMMVLFTDPRGHLIMGASAVWMSIGIFVMRNMI 332

Query: 184 NFDV 187
           NFD+
Sbjct: 333 NFDI 336


>gi|254780722|ref|YP_003065135.1| pilus assembly protein [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040399|gb|ACT57195.1| pilus assembly protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 187

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 187/187 (100%), Positives = 187/187 (100%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH
Sbjct: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ
Sbjct: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR
Sbjct: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180

Query: 181 LMINFDV 187
           LMINFDV
Sbjct: 181 LMINFDV 187


>gi|225872757|ref|YP_002754214.1| bacterial type II secretion system protein F domain protein
           [Acidobacterium capsulatum ATCC 51196]
 gi|225792618|gb|ACO32708.1| bacterial type II secretion system protein F domain protein
           [Acidobacterium capsulatum ATCC 51196]
          Length = 323

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 98/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     +R  KF    P+++D++ R++RAG  V+ A+ V+  Q  +PV SEF  V   Q+
Sbjct: 137 LNFQRAQRLKKFNAALPDSIDLLGRALRAGHSVASAIEVVSEQGQEPVASEFGEVFRAQN 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            GL   +++ ++   +P  ++ F  T + VQ + GGNL+E L   + ++R+R  ++ +V+
Sbjct: 197 FGLPFRDAMLQLAERVPSSDLRFLVTAMMVQKETGGNLTEILDRTTYVIRERLRIQGEVK 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             + + + +  I+  LP  +  L+   +P Y   L  DP G  +L   A  + +G   + 
Sbjct: 257 TKTAQGRLTGVILALLPIILGILINVINPDYAKPLFTDPLGKKMLYAGAGLISVGAFFIN 316

Query: 181 LMINFDV 187
            ++  +V
Sbjct: 317 KIVKIEV 323


>gi|190889885|ref|YP_001976427.1| pilus assembly protein [Rhizobium etli CIAT 652]
 gi|190695164|gb|ACE89249.1| probable pilus assembly protein [Rhizobium etli CIAT 652]
 gi|327194690|gb|EGE61536.1| putative pilus assembly protein [Rhizobium etli CNPAF512]
          Length = 335

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 113/187 (60%), Positives = 155/187 (82%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  LIK+R  KFL++ PNALD+I RS+++GLP++DA+ +I  + ++PV+SEFRRVIE Q 
Sbjct: 149 LGFLIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIGTEGTEPVKSEFRRVIEAQQ 208

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GLS+ ++ +RM  +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV 
Sbjct: 209 VGLSIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVS 268

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASA IIG+LPF V+TLVY TSP YM +L  DPRGH+++G++A +M IGI VMR
Sbjct: 269 ALSMEAKASAVIIGALPFIVATLVYLTSPNYMMILFTDPRGHLIMGISAVWMSIGIFVMR 328

Query: 181 LMINFDV 187
            M+NFD+
Sbjct: 329 NMVNFDI 335


>gi|15963898|ref|NP_384251.1| hypothetical protein SMc02821 [Sinorhizobium meliloti 1021]
 gi|307315795|ref|ZP_07595309.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           BL225C]
 gi|15073073|emb|CAC41532.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021]
 gi|306898563|gb|EFN29236.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           BL225C]
          Length = 336

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 111/187 (59%), Positives = 154/187 (82%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  ++K+R  KFLD+FPN+LD++VRS+++GLP++DA+ +I     +PVR+EFRRV+E+Q 
Sbjct: 150 VGSMVKRRCRKFLDEFPNSLDVMVRSIKSGLPLNDALRLIASDGQEPVRTEFRRVVESQQ 209

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GL++ E+ +RM+  +PL EV+FF+ VI++Q+Q GGNLSEAL NLS++LR+R+ MKAKV 
Sbjct: 210 VGLNVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVS 269

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASA IIG+LPF V+TLVY TSP YM VL  DPRGH+++G +A +M IGI VMR
Sbjct: 270 ALSMEAKASACIIGALPFIVATLVYLTSPDYMMVLFTDPRGHIIMGASAVWMSIGIWVMR 329

Query: 181 LMINFDV 187
            MINFD+
Sbjct: 330 NMINFDI 336


>gi|148976657|ref|ZP_01813344.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3]
 gi|145964008|gb|EDK29266.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3]
          Length = 321

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/187 (31%), Positives = 106/187 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++ +  R A+F +  P ALDII R+++AG P+  +   +  +  +P+  EF+      +
Sbjct: 135 VQNRVTYRMARFEEQLPEALDIIRRALQAGQPIVQSFNEVGEEMPEPIGVEFKNTYNLLN 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L  +I +M   +P   +  FS+ + +Q + GGNLSE L  +S +LR R  ++ K++
Sbjct: 195 YGYDLRLAIMQMTERVPTVSMLAFSSAVMLQKETGGNLSENLQKVSEVLRARFKLERKIK 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E++ SAWI+   PF +   + F +P Y+  L +DPRG  ++ +    + IG + +R
Sbjct: 255 TLSAESRLSAWILTLSPFVLFFGLKFVNPEYIEPLYSDPRGISMVSIGVILLAIGALWIR 314

Query: 181 LMINFDV 187
            +IN ++
Sbjct: 315 KIINIEI 321


>gi|315181053|gb|ADT87967.1| Flp pilus assembly protein TadB [Vibrio furnissii NCTC 11218]
          Length = 321

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 61/187 (32%), Positives = 103/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  I  R +KF +  P+ALDII R ++AG P++ +   +  +   P+  EF+      +
Sbjct: 135 LQKKISDRLSKFEEQLPDALDIIRRMLQAGQPLTQSFNEVGNEMPAPIGVEFKNTFNLLN 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L  +I +M    P   +  FS+ + +Q + GGNLSE L  +S++LR R  +  K++
Sbjct: 195 YGYDLRLAIMQMADRTPTVSMLAFSSAVLLQKETGGNLSENLDKVSKVLRARFKLARKIK 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +S E++ SAWI+   PF +   +    PGY++ L  DPRG  L+      + +G + MR
Sbjct: 255 TISAESRMSAWILVLSPFVLFIAMSIIHPGYVSPLYEDPRGVGLISYGIVSLFMGSLWMR 314

Query: 181 LMINFDV 187
            +INF+V
Sbjct: 315 HIINFEV 321


>gi|92116009|ref|YP_575738.1| type II secretion system protein [Nitrobacter hamburgensis X14]
 gi|91798903|gb|ABE61278.1| type II secretion system protein [Nitrobacter hamburgensis X14]
          Length = 324

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 91/186 (48%), Positives = 128/186 (68%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L  +R   FL   P+A+D+IVR ++AGLP+ +++ V+   S +P++SEF  +IETQ 
Sbjct: 138 LGFLKTRREKAFLRALPDAVDVIVRGIKAGLPLFESIKVVAADSPEPLKSEFAAIIETQA 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E+ +R+   MP+ E +FF  VI++Q + GGNLSEAL NLS++LRDRK M  K+Q
Sbjct: 198 IGMPLGEACARLYERMPVPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  LVY T+P Y+ +L   P G ++L     +M  GI VM+
Sbjct: 258 AMSMEAKASAAIIGSLPPVVMMLVYLTTPDYIAMLWTHPTGRLMLAGCVLWMSAGIFVMK 317

Query: 181 LMINFD 186
            MINFD
Sbjct: 318 KMINFD 323


>gi|307320430|ref|ZP_07599847.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           AK83]
 gi|306893996|gb|EFN24765.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           AK83]
          Length = 336

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 111/187 (59%), Positives = 154/187 (82%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  ++K+R  KFLD+FPN+LD++VRS+++GLP++DA+ +I     +PVR+EFRRV+E+Q 
Sbjct: 150 VGSMVKRRCRKFLDEFPNSLDVMVRSIKSGLPLNDALRLIASDGQEPVRTEFRRVVESQQ 209

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GL++ E+ +RM+  +PL EV+FF+ VI++Q+Q GGNLSEAL NLS++LR+R+ MKAKV 
Sbjct: 210 VGLNVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVG 269

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASA IIG+LPF V+TLVY TSP YM VL  DPRGH+++G +A +M IGI VMR
Sbjct: 270 ALSMEAKASACIIGALPFIVATLVYLTSPDYMMVLFTDPRGHIIMGASAVWMSIGIWVMR 329

Query: 181 LMINFDV 187
            MINFD+
Sbjct: 330 NMINFDI 336


>gi|323491539|ref|ZP_08096718.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546]
 gi|323314115|gb|EGA67200.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546]
          Length = 322

 Score =  126 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/187 (33%), Positives = 100/187 (53%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I  R A F +  P ALDI+ R ++AG PV+ A   +  +   P+  EF+      +
Sbjct: 136 LGKKISDRLAAFEEQLPEALDIMRRMLQAGQPVTQAFNEVGVEMPAPIGIEFKNTFNLLN 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  +  +I +M    P   +  FS+ + +Q + GGNLSE L  +SR+LR R  ++ K++
Sbjct: 196 YGYDMRMAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSRVLRARFKLQRKIK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E++ SAWI+   PF +   +   +PGY+  L  DPRG  L+      +  G + +R
Sbjct: 256 TLSAESRLSAWILVLSPFVLFIFLSVINPGYVEPLYTDPRGMKLVSGGVVSLFFGSLWIR 315

Query: 181 LMINFDV 187
            +INF+V
Sbjct: 316 KIINFEV 322


>gi|218461009|ref|ZP_03501100.1| probable pilus assembly protein [Rhizobium etli Kim 5]
 gi|218662450|ref|ZP_03518380.1| probable pilus assembly protein [Rhizobium etli IE4771]
          Length = 335

 Score =  126 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 113/187 (60%), Positives = 154/187 (82%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  LIK+R  KFL++ PNALD+I RS+++GLP++DA+ +I  + ++PV+SEFRR+IE Q 
Sbjct: 149 LGFLIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIGTEGTEPVKSEFRRIIEAQQ 208

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GLS+ ++ +RM  +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV 
Sbjct: 209 VGLSIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVS 268

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASA IIG+LPF V+TLVY TSP YM +L  DPRGH ++GV+A +M IGI VMR
Sbjct: 269 ALSMEAKASAVIIGALPFIVATLVYLTSPNYMMILFTDPRGHFIMGVSAIWMSIGIFVMR 328

Query: 181 LMINFDV 187
            M+NFD+
Sbjct: 329 NMVNFDI 335


>gi|269126092|ref|YP_003299462.1| type II secretion system protein [Thermomonospora curvata DSM
           43183]
 gi|268311050|gb|ACY97424.1| type II secretion system protein [Thermomonospora curvata DSM
           43183]
          Length = 660

 Score =  126 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 99/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   ++R   F D  P+AL ++  S+R+G  V+ +V  + G    P+  E  R +    
Sbjct: 474 LRGRAERRLTAFADQLPDALQLVAGSLRSGFSVAQSVERLAGLELQPMGQEMARAVAQTR 533

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+S  +++  +   M  +++ +    I +Q ++GGNLSE +   +  +R+R  ++ +++
Sbjct: 534 LGVSTEDALRSVADRMNCRDLHWVVLAIQIQREVGGNLSEVIETTAETMRERTRLRRQIR 593

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E + SA+++ +LP     L+  + P YM  L   P G  ++ +A   + +G + + 
Sbjct: 594 ALSAEGRLSAYVLIALPVITGGLLTVSRPDYMRPLYTTPMGIGMICLAVFLVALGWLWLS 653

Query: 181 LMINFDV 187
            ++  +V
Sbjct: 654 KVVKVEV 660


>gi|254473793|ref|ZP_05087188.1| type II secretion system protein [Pseudovibrio sp. JE062]
 gi|211957179|gb|EEA92384.1| type II secretion system protein [Pseudovibrio sp. JE062]
          Length = 339

 Score =  126 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 85/187 (45%), Positives = 135/187 (72%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR  +FL++FPNA+DIIVR +++G+P+ D + +   ++ DPV +EF  V++   
Sbjct: 153 VSRARKKRFNRFLEEFPNAVDIIVRGIKSGMPLGDCMHIAASEAKDPVGTEFSLVLDKMQ 212

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L+E+I  + + +PLQE +F + V+++Q+Q GG+LSEAL NLS+ LR RK MK K++
Sbjct: 213 MGMPLAEAIQSLPKRVPLQETNFLAIVVTIQAQAGGSLSEALGNLSKTLRQRKEMKGKIR 272

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S EAK+SA IIGSLPF V+ L++  SP Y+ +L++   G +L+G+   +M IGI+VMR
Sbjct: 273 AVSQEAKSSAAIIGSLPFIVTALLFVLSPDYIKLLVDTDIGLVLIGIGLFWMSIGILVMR 332

Query: 181 LMINFDV 187
            MI+F +
Sbjct: 333 KMIDFKI 339


>gi|187919328|ref|YP_001888359.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
 gi|187717766|gb|ACD18989.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
          Length = 325

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 110/185 (59%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               KR  +     P+A D+I R++RAG     A+ ++  +  +P+  EF  V +  + G
Sbjct: 141 RKRTKRVLQLERQLPDAADLIARALRAGHSFPAALGMVGEELPNPLGGEFALVFDEINYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +S+S+++  MV  +P++++ +F   + +Q + GGNL+E L +++ I+R+R  +  KV+ L
Sbjct: 201 VSMSDALLNMVNRVPVEDLRYFVIAVLIQREAGGNLAEILGSIAGIIRERLKLLGKVRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAW++G LPF +  L+   +PGY++V   DP G  + GVA A ML GI+ MR +
Sbjct: 261 SAEGRLSAWVLGVLPFAILGLLSVLNPGYISVFWKDPAGPQIAGVAIAMMLFGILWMRKV 320

Query: 183 INFDV 187
           +   V
Sbjct: 321 VRIRV 325


>gi|163757631|ref|ZP_02164720.1| hypothetical protein HPDFL43_19512 [Hoeflea phototrophica DFL-43]
 gi|162285133|gb|EDQ35415.1| hypothetical protein HPDFL43_19512 [Hoeflea phototrophica DFL-43]
          Length = 336

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 105/187 (56%), Positives = 149/187 (79%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L  +R   FL +FPNALDI+VRS+++GLP++DA+ +I  +  +PVR+EF+R++++Q 
Sbjct: 150 VGYLRNRRLKAFLSEFPNALDIMVRSIKSGLPLNDAIRMISAEGQEPVRTEFKRIVDSQQ 209

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+++ E+ +R+   +PL E +FFS VI++Q+Q GGNLSEAL NLSR+LRDRK MKAK+ 
Sbjct: 210 MGMNIPEACARLYSRIPLSEANFFSIVIAIQAQAGGNLSEALGNLSRVLRDRKKMKAKIN 269

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASA IIG+LPF V+ LVY TSP Y+ +L  D RGH++LG +A +M IGI+VMR
Sbjct: 270 ALSMEAKASAAIIGALPFIVALLVYLTSPDYIMILFTDTRGHLILGASAIWMSIGILVMR 329

Query: 181 LMINFDV 187
            MINFD+
Sbjct: 330 NMINFDI 336


>gi|91788418|ref|YP_549370.1| type II secretion system protein [Polaromonas sp. JS666]
 gi|91697643|gb|ABE44472.1| type II secretion system protein [Polaromonas sp. JS666]
          Length = 325

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 61/187 (32%), Positives = 108/187 (57%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  +     P+ALD++ R++RAG     A+ ++  + +DP+  EFR   +  +
Sbjct: 139 VTRAKRKRLDRIEHQLPDALDLMGRALRAGHAFPTALKMVGDEMNDPLAGEFRIAFDEVN 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+++ +++  M   +P  ++ +F   + +Q + GGNLSE L ++S I+RDR  +  +V+
Sbjct: 199 FGIAMPDALMNMATRVPSTDLRYFVIAVLIQRETGGNLSELLTSISAIIRDRIKLMGQVR 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E K SAW++  LPF  + ++  T+P ++ VL  DP G  +L  A   M +GI+VMR
Sbjct: 259 VLSAEGKMSAWVLSLLPFGAAFMIQLTNPKFLEVLYTDPAGRKMLAAAIVMMALGILVMR 318

Query: 181 LMINFDV 187
            +I   V
Sbjct: 319 KIIRIRV 325


>gi|209551763|ref|YP_002283680.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537519|gb|ACI57454.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 335

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 114/187 (60%), Positives = 154/187 (82%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  LIK+R  KFL++ PNALD+I RS+++GLP++DA+ +I  + ++PV+SEFRRVIE Q 
Sbjct: 149 VGFLIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIATEGTEPVKSEFRRVIEAQQ 208

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GLS+ ++ +RM  +MPLQEVSFF+ VI++QSQ GGNLSEA+ NLS+++R+R+ MKAKV 
Sbjct: 209 VGLSIPDACARMTAHMPLQEVSFFAIVIAIQSQAGGNLSEAIGNLSKVIRERRKMKAKVS 268

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASA IIG+LPF V+TLVY TSP YM +L  DPRGH ++GV+A +M IGI VMR
Sbjct: 269 ALSMEAKASAVIIGALPFIVATLVYLTSPSYMMILFTDPRGHFIMGVSAIWMSIGIFVMR 328

Query: 181 LMINFDV 187
            M+NFD+
Sbjct: 329 NMVNFDI 335


>gi|86355868|ref|YP_467760.1| pilus assembly protein [Rhizobium etli CFN 42]
 gi|86279970|gb|ABC89033.1| probable pilus assembly protein [Rhizobium etli CFN 42]
          Length = 335

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 115/187 (61%), Positives = 155/187 (82%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  LIK+R  KFL++FPNALD+I RS+++GLP++DA+ +I  + ++PV+SEFRRVIE Q 
Sbjct: 149 IGFLIKRRQNKFLNEFPNALDVITRSIKSGLPLNDAIRLIATEGTEPVKSEFRRVIEAQQ 208

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GLS+ ++ +RM  +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV 
Sbjct: 209 VGLSIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVS 268

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASA IIG+LPF V+TLVY TSP YM VL  DPRGH ++G +A +M IGI+VMR
Sbjct: 269 ALSMEAKASAVIIGALPFIVATLVYLTSPNYMIVLFTDPRGHFIMGASAVWMSIGILVMR 328

Query: 181 LMINFDV 187
            M+NFD+
Sbjct: 329 NMVNFDI 335


>gi|241207161|ref|YP_002978257.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861051|gb|ACS58718.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 335

 Score =  125 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 114/187 (60%), Positives = 154/187 (82%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  LIK+R  KFL++ PNALD+I RS+++GLP++DA+ +I  + ++PV+SEF RVIE Q 
Sbjct: 149 VGFLIKRRQTKFLNELPNALDVITRSIKSGLPLNDAIRLIATEGTEPVKSEFLRVIEAQQ 208

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GLS+ ++ +RM  +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKVQ
Sbjct: 209 VGLSIPDACARMTIHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVQ 268

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASA IIG+LPF V+TLVY TSP YM +L  DPRGH ++GV+A +M IGI VMR
Sbjct: 269 ALSMEAKASAVIIGALPFIVATLVYMTSPNYMMILFTDPRGHFIMGVSAIWMSIGIFVMR 328

Query: 181 LMINFDV 187
            M+NFD+
Sbjct: 329 NMVNFDI 335


>gi|116249985|ref|YP_765823.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254633|emb|CAK05707.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 335

 Score =  125 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 114/187 (60%), Positives = 154/187 (82%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  LIK+R  KFL++FPNALD+I RS+++GLP++DA+ +I  + ++PV+SEF RVIE Q 
Sbjct: 149 VGFLIKRRQTKFLNEFPNALDVITRSIKSGLPLNDAIRLIATEGTEPVKSEFLRVIEAQQ 208

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GLS+ ++ +RM  +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV 
Sbjct: 209 VGLSIPDACARMTIHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVS 268

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASA IIG+LPF V+TLVY TSP YM +L  DPRGH ++GV+A +M IGI VMR
Sbjct: 269 ALSMEAKASAVIIGALPFIVATLVYMTSPNYMMILFTDPRGHFIMGVSAIWMSIGIFVMR 328

Query: 181 LMINFDV 187
            M+NFD+
Sbjct: 329 NMVNFDI 335


>gi|295690794|ref|YP_003594487.1| type II secretion system F domain-containing protein [Caulobacter
           segnis ATCC 21756]
 gi|295432697|gb|ADG11869.1| Type II secretion system F domain protein [Caulobacter segnis ATCC
           21756]
          Length = 325

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 88/186 (47%), Positives = 125/186 (67%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L + R  KF + F +A+DIIVR +++GLP+ D + +I  +S +P+  EFR + E   
Sbjct: 139 LSILAQGRIRKFTEAFSDAIDIIVRGIKSGLPLHDCLRIIGQESPEPLAGEFRMLTENVA 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L  ++ +M   MP  E+ FF+ V+++Q + GGNL+EAL NLS +LR RK MK K++
Sbjct: 199 MGVPLDAALDKMHERMPTNELRFFAIVLAIQQKTGGNLAEALGNLSTVLRSRKMMKEKIK 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS EA ASA IIG+LP  V  L+  TSP YM  L  DPRGH++L  AA +M IG++VMR
Sbjct: 259 ALSAEAVASALIIGALPPGVIVLISVTSPAYMQPLFTDPRGHLMLLAAAIWMGIGVLVMR 318

Query: 181 LMINFD 186
            MINF 
Sbjct: 319 KMINFK 324


>gi|170750193|ref|YP_001756453.1| type II secretion system protein [Methylobacterium radiotolerans
           JCM 2831]
 gi|170656715|gb|ACB25770.1| type II secretion system protein [Methylobacterium radiotolerans
           JCM 2831]
          Length = 325

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 94/186 (50%), Positives = 130/186 (69%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++HL  KR AKF  + PNA+D++VR +R G+PV D   ++  ++ +PVRSEFR V+ETQ 
Sbjct: 139 LRHLRLKRIAKFNKELPNAVDVVVRGIRTGIPVGDCFRMVSREAEEPVRSEFRTVVETQA 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GLSL E+ +R+   +P  EV+FF+ VI++Q Q GGNLSEAL NLS +LRDR  M+ KVQ
Sbjct: 199 MGLSLGEACTRLFERVPTAEVNFFAIVINIQQQSGGNLSEALNNLSTVLRDRAKMRGKVQ 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA II  LPF V+ +   TSP Y+++L     G + L  AA +M IGI  ++
Sbjct: 259 AMSMEAKASASIIACLPFAVAGITALTSPDYISLLWTTDTGKIALVGAAIWMSIGIFTIK 318

Query: 181 LMINFD 186
            MI F+
Sbjct: 319 KMIAFE 324


>gi|86147460|ref|ZP_01065772.1| Flp pilus assembly protein TadB [Vibrio sp. MED222]
 gi|85834753|gb|EAQ52899.1| Flp pilus assembly protein TadB [Vibrio sp. MED222]
          Length = 321

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 58/187 (31%), Positives = 104/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++ +  R A+F +  P ALDII R+++AG P+  +   +  +  +P+  EF+      +
Sbjct: 135 VQNRVTYRMARFEEQLPEALDIIRRALQAGQPLVQSFNEVGEEMPEPIGVEFKNTYNLLN 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L  +I +M    P   +  FS+ + +Q + GGNLSE L  +S +LR R  ++ K++
Sbjct: 195 YGYDLRLAIMQMTERAPTVSMLAFSSAVMLQKETGGNLSENLQKVSEVLRARFKLERKIK 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E++ SAWI+   PF +   + F +P Y+  L  DPRG  ++ +    + IG + +R
Sbjct: 255 TLSAESRLSAWILTLSPFVLFFGLKFVNPEYIEPLYTDPRGISMVSIGVILLAIGALWIR 314

Query: 181 LMINFDV 187
            +IN ++
Sbjct: 315 KIINIEI 321


>gi|75674495|ref|YP_316916.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255]
 gi|74419365|gb|ABA03564.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255]
          Length = 324

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 92/186 (49%), Positives = 132/186 (70%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+R   FL   P+A+D+IVR ++AGLP+ +++ V+   S +P++SEF  +IETQ 
Sbjct: 138 LGFLKKRRETAFLRALPDAVDVIVRGIKAGLPLFESLKVVAADSPEPLKSEFAAIIETQA 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E+ SR+   MP+ E +FF  VI++Q + GGNLSEAL NLS++LRDRK M  K++
Sbjct: 198 IGMPLGEACSRLYERMPVPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIK 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  LVY ++P Y+ +L   P G ++L  +A +M  GI+VM+
Sbjct: 258 AVSMEAKASAAIIGSLPPIVMLLVYLSTPDYIALLWTHPTGRLMLAGSALWMTAGILVMK 317

Query: 181 LMINFD 186
            MINFD
Sbjct: 318 KMINFD 323


>gi|300021858|ref|YP_003754469.1| type II secretion system protein F [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299523679|gb|ADJ22148.1| Type II secretion system F domain protein [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 332

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 89/186 (47%), Positives = 128/186 (68%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+R AKF     NA+D++VR V++GLP+++ + VI  +S +P+  EFR V+E Q 
Sbjct: 146 VAKLTKRRQAKFTSHLANAIDVVVRGVKSGLPLNECLQVIARESPEPLAGEFRSVMEQQR 205

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L++++ RM   MPL EV F + VI++Q Q GGNLSEAL+NLS +LRDR+ +  KV+
Sbjct: 206 LGVPLADALDRMYDRMPLAEVRFLTIVIAIQQQAGGNLSEALSNLSGVLRDRQMLALKVK 265

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS EAKASA ++ SLP  V  +VY +SPGYM  L     G  ++ + A +M IG++VM+
Sbjct: 266 ALSAEAKASAMVLASLPPGVMFMVYMSSPGYMMPLFTTTPGRFMMALGATWMTIGVLVMK 325

Query: 181 LMINFD 186
            MINF 
Sbjct: 326 KMINFK 331


>gi|78186532|ref|YP_374575.1| TadB protein [Chlorobium luteolum DSM 273]
 gi|78166434|gb|ABB23532.1| TadB protein [Chlorobium luteolum DSM 273]
          Length = 322

 Score =  124 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 108/187 (57%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L  +R   F D  P ALD I R++RAG  ++ A+ ++  +  +P+  EF+ V +   
Sbjct: 136 LMQLADRRLRAFEDKLPEALDHISRALRAGHSLAPAMGMVGQEFGEPIGYEFKIVFDEIG 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+   E+I R+   M   +++FF   +++Q + GGNL+E    L+R +R R  ++ K++
Sbjct: 196 FGIPFKEAIGRLAERMQSTDLNFFVISLTIQHETGGNLTELFDGLARTIRHRIKLRGKIR 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E +AS W++GS+PF +  ++   +P Y+++L    RG+ L+ + A  M +G +V++
Sbjct: 256 TLSSEGRASGWVLGSMPFVLMMVLSLINPEYISLLWTTSRGNNLMLIGAGLMSVGFVVLK 315

Query: 181 LMINFDV 187
            ++   V
Sbjct: 316 RIVQIKV 322


>gi|110632960|ref|YP_673168.1| type II secretion system protein [Mesorhizobium sp. BNC1]
 gi|110283944|gb|ABG62003.1| type II secretion system protein [Chelativorans sp. BNC1]
          Length = 338

 Score =  124 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 88/186 (47%), Positives = 136/186 (73%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    K+R  +F ++F NA+D+IVR +++GLPV D + +I  ++ +PV+SEF  +++ Q 
Sbjct: 152 VASRRKRRFKQFTNEFSNAVDVIVRGLKSGLPVGDCLRIIAAEAQEPVKSEFVAIVQDQT 211

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+SL E++ R+   +PL E +FF+ V+ +QS+ GG+L+EAL NLS++LR+RK M AK++
Sbjct: 212 LGISLDEAVQRLWERVPLAEANFFAIVVGLQSRTGGSLAEALGNLSKVLRERKKMSAKIR 271

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S EAK+SA IIG+LPF VS  +Y TSP YM++L +   G ++L   A +M +GI+VMR
Sbjct: 272 AMSSEAKSSAGIIGALPFFVSAAIYLTSPDYMSLLFSTLTGKLVLAGCALWMGMGILVMR 331

Query: 181 LMINFD 186
            MINFD
Sbjct: 332 KMINFD 337


>gi|225181995|ref|ZP_03735427.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
 gi|225167280|gb|EEG76099.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
          Length = 319

 Score =  124 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 101/186 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+   KR  KF D   +AL I+  S+RAG     A+  +  +   P+ +EF R ++   
Sbjct: 133 LKNAKMKRLQKFNDQLGDALGIMSNSLRAGFSFLQAMDSLSKELPPPISTEFGRALKEMR 192

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG    E+++ M   +   ++    T +++Q Q+GGNL+E L N+   + +R  MK +++
Sbjct: 193 LGTPTEEALANMTERIRSDDLDLIVTAVNIQRQVGGNLAEILDNIGNTISERVRMKGEIK 252

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L+ + + S  I+  LP  +  ++   +P Y+ +L   P G +L+G A    LIGIM+++
Sbjct: 253 TLTAQGRISGTIVALLPVFLVGVISVMNPSYIGLLFTHPLGLILIGGAVISELIGIMLIK 312

Query: 181 LMINFD 186
            +IN +
Sbjct: 313 KVINIE 318


>gi|325673437|ref|ZP_08153128.1| type II secretion system protein [Rhodococcus equi ATCC 33707]
 gi|325555458|gb|EGD25129.1| type II secretion system protein [Rhodococcus equi ATCC 33707]
          Length = 623

 Score =  124 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 104/186 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ +  +R A F D   ++L ++  ++RAG  +  A+  +  ++  P   EF R++    
Sbjct: 437 LRVMAGRRRAAFADQLDDSLQLLASNLRAGHSMLRALDSLSREAEVPTSEEFARIVNETR 496

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G  L+ES+  + R M   + ++ +  I++  ++GG+L+E L  +   +R+R  ++ +V+
Sbjct: 497 VGRDLNESLDDVARRMRSDDFNWIAQAIAINREVGGDLAEVLDQVGNTIRERNQIRRQVK 556

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ E K SA+++ +LPF ++  +  ++P Y++ L     G++++ V    + +G + M 
Sbjct: 557 ALAAEGKLSAYVLMALPFGLTAFLLVSNPDYLSKLTGSAIGYVMIAVGLVMLTVGGLWMN 616

Query: 181 LMINFD 186
            +++  
Sbjct: 617 KVVSVK 622


>gi|219883049|ref|YP_002478213.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
 gi|219862055|gb|ACL42396.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
          Length = 309

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 99/186 (53%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L  KR  KF D   ++L ++   +RAG  +  AV  +  Q+  P   EF R++    
Sbjct: 123 LSFLAGKRRKKFADQLDDSLQLLSGGLRAGHSLQRAVDAVSQQAPSPTAEEFSRIMNETR 182

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G  L++++ +    M  ++ S+ S  I +  ++GG+L++ L  + R +R+R  ++ +V+
Sbjct: 183 IGRDLTDAMDQTAERMKSEDFSWVSQAIGIHREVGGDLADVLDQVGRTIRERNQIQRQVK 242

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E K SA+++ +LP  +  ++   SP Y+    + P G  ++      M +G + ++
Sbjct: 243 ALSAEGKMSAYVLMALPVLIIGVLAIISPSYIVSFGSSPLGWGMVAGGILMMTVGGLWLK 302

Query: 181 LMINFD 186
            +++F 
Sbjct: 303 KIVSFK 308


>gi|312139258|ref|YP_004006594.1| type ii secretion system integral membrane subunit [Rhodococcus
           equi 103S]
 gi|311888597|emb|CBH47909.1| putative type II secretion system integral membrane subunit
           [Rhodococcus equi 103S]
          Length = 622

 Score =  124 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 104/186 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ +  +R A F D   ++L ++  ++RAG  +  A+  +  ++  P   EF R++    
Sbjct: 436 LRVMAGRRRAAFADQLDDSLQLLASNLRAGHSMLRALDSLSREAEVPTSEEFARIVNETR 495

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G  L+ES+  + R M   + ++ +  I++  ++GG+L+E L  +   +R+R  ++ +V+
Sbjct: 496 VGRDLNESLDDVARRMRSDDFNWIAQAIAINREVGGDLAEVLDQVGNTIRERNQIRRQVK 555

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ E K SA+++ +LPF ++  +  ++P Y++ L     G++++ V    + +G + M 
Sbjct: 556 ALAAEGKLSAYVLMALPFGLTAFLLVSNPDYLSKLTGSAIGYVMIAVGLVMLTVGGLWMN 615

Query: 181 LMINFD 186
            +++  
Sbjct: 616 KVVSVK 621


>gi|218710399|ref|YP_002418020.1| Flp pilus assembly protein TadB [Vibrio splendidus LGP32]
 gi|218323418|emb|CAV19595.1| Flp pilus assembly protein TadB [Vibrio splendidus LGP32]
          Length = 321

 Score =  124 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 58/187 (31%), Positives = 106/187 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++ +  R A+F +  P ALDII R+++AG P+  +   +  +  DP+ +EF+      +
Sbjct: 135 VQNRVSYRMARFEEQLPEALDIIRRALQAGQPLIQSFNEVGEELPDPIGAEFKNTYNLLN 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L  +I +M   +P   +  FS+ + +Q + GGNLSE L  +S +LR R  ++ K++
Sbjct: 195 YGYDLRLAILQMAERVPTVSMLAFSSAVMLQKETGGNLSENLQKVSEVLRSRFKLERKIK 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E++ SAWI+   PF +   +   +P Y+  L NDPRG  ++ V    + IG + ++
Sbjct: 255 TLSAESRLSAWILTLSPFGLFFALKVANPDYIEPLYNDPRGVSMVSVGIVLLAIGALWIK 314

Query: 181 LMINFDV 187
            +I+ ++
Sbjct: 315 RIISIEI 321


>gi|85713509|ref|ZP_01044499.1| type II secretion system protein [Nitrobacter sp. Nb-311A]
 gi|85699413|gb|EAQ37280.1| type II secretion system protein [Nitrobacter sp. Nb-311A]
          Length = 324

 Score =  124 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 92/186 (49%), Positives = 132/186 (70%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L ++R   FL   P+A+D+IVR ++AGLP+ +++ V+V  S +P++SEF  +IETQ 
Sbjct: 138 LGFLKQRRETAFLRALPDAVDVIVRGIKAGLPLFESLKVVVADSPEPLKSEFAAIIETQA 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E+ SR+   MP+ E +FF  VI++Q + GGNLSEAL NLS++LRDRK M  K++
Sbjct: 198 VGMPLGEACSRLYERMPVPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIK 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S EAKASA IIGSLP  V  LVY ++P Y+ +L   P G ++L  +A +M  GI+VMR
Sbjct: 258 AVSTEAKASAAIIGSLPPIVMLLVYLSTPDYIALLWTHPTGRLMLAGSALWMSAGILVMR 317

Query: 181 LMINFD 186
            MINFD
Sbjct: 318 KMINFD 323


>gi|83859361|ref|ZP_00952882.1| hypothetical protein OA2633_13190 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852808|gb|EAP90661.1| hypothetical protein OA2633_13190 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 331

 Score =  124 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 93/187 (49%), Positives = 128/187 (68%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  + K R  KF ++F +ALDIIVR V++GLP+++ + +I  +   PV+ EF+ ++E   
Sbjct: 145 LGMMRKGRQKKFTENFADALDIIVRGVKSGLPLNETLKIIAQEGEAPVKQEFQLLVEGLA 204

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ + E + RM R MPL E+SFF+TV+++Q + GGNL+EAL NLS +LR RK M+ KV 
Sbjct: 205 VGVDVEEGMRRMHRRMPLPELSFFTTVLAIQQKTGGNLAEALNNLSAVLRARKMMREKVS 264

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS EAKASAWIIGSLP  V  +V   SP YM  L+  P GH LL     +ML GI+VMR
Sbjct: 265 ALSSEAKASAWIIGSLPPGVGVMVSIMSPDYMTPLLTTPMGHFLLLGGGVWMLTGILVMR 324

Query: 181 LMINFDV 187
            MINF +
Sbjct: 325 SMINFKM 331


>gi|254293218|ref|YP_003059241.1| type II secretion system protein [Hirschia baltica ATCC 49814]
 gi|254041749|gb|ACT58544.1| type II secretion system protein [Hirschia baltica ATCC 49814]
          Length = 331

 Score =  123 bits (309), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 90/183 (49%), Positives = 121/183 (66%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I  R  KF   F + +D+IVR V++GLP+ + + +I  +S  P+ +EF+RVI+   +G +
Sbjct: 149 ISARQKKFTQQFSDGIDVIVRGVKSGLPLIECLRIIASESPAPLGTEFKRVIDAIQMGTT 208

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           + +S+S M   MPL EV+FF  VI +Q Q GGNLSEAL NLS +LR RK +  KV+ALS 
Sbjct: 209 VEKSLSNMYNRMPLPEVNFFGIVIGIQQQSGGNLSEALGNLSEVLRSRKMLAEKVKALSS 268

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           EAKASA IIG+LP  V  LVYF+SP Y+ +L   P GH +L V A  M  GI VM+ M+ 
Sbjct: 269 EAKASAMIIGALPIAVMILVYFSSPDYITLLFTHPTGHFMLMVGAGLMGAGIFVMKQMMK 328

Query: 185 FDV 187
            DV
Sbjct: 329 LDV 331


>gi|121534345|ref|ZP_01666169.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
 gi|121307115|gb|EAX48033.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
          Length = 324

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 108/187 (57%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  +++RT  F D   +AL +I  S+R G     ++ ++  +   P+ +EF RV+   +
Sbjct: 138 LRVKVERRTKAFNDQLGDALILIANSLRTGYSFLQSIEMVSREMLPPIATEFARVLREMN 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG++  E+++ + + +   ++    T + +Q Q+GGNL+E L N++  +R R  +K +++
Sbjct: 198 LGVTTEEALNNLAKRVDSDDLDLVVTAVLIQRQVGGNLAEVLENIAGTIRSRIKIKGEIK 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L+ + + S  IIG LP  +  ++Y  +PGYM +L   P G  L+  A    LIG++++R
Sbjct: 258 TLTAQGRISGVIIGLLPVALGLVIYALNPGYMQILFTHPLGRALVAGAIVSQLIGVLLIR 317

Query: 181 LMINFDV 187
            ++N DV
Sbjct: 318 RIVNIDV 324


>gi|15887569|ref|NP_353250.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
 gi|15155106|gb|AAK86035.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
          Length = 334

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 109/187 (58%), Positives = 151/187 (80%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L+K+R  KFL++FPNALD++ RS+++GLP++DAV +I     +PV++EF+RV++ Q 
Sbjct: 148 LAFLLKRRQKKFLEEFPNALDVMCRSIKSGLPLNDAVRLIASDGQEPVKTEFQRVVDAQQ 207

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ + + I RM+  MPL EVSFFS VI++Q+Q GGNLSEAL+NLSR+LRDR+ M+AKV 
Sbjct: 208 VGIGIPQGIERMMLTMPLFEVSFFSIVINIQAQAGGNLSEALSNLSRVLRDRRKMRAKVN 267

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASA IIG+LPF V  LV+FTSP Y+++L  D RGH++LG +A +MLIGI +MR
Sbjct: 268 ALSMEAKASAVIIGALPFIVMLLVHFTSPDYLSILFTDTRGHLILGASAIWMLIGIFIMR 327

Query: 181 LMINFDV 187
            MINFD+
Sbjct: 328 QMINFDI 334


>gi|82703470|ref|YP_413036.1| type II secretion system protein [Nitrosospira multiformis ATCC
           25196]
 gi|82411535|gb|ABB75644.1| type II secretion system protein [Nitrosospira multiformis ATCC
           25196]
          Length = 323

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 57/184 (30%), Positives = 102/184 (55%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             +KR  K     P  +D++ R+++AG   S A+ +      +P   EFR   +  + G+
Sbjct: 140 AKRKRLEKIERQLPEVIDLMARALKAGHAFSGALQMASTDGPEPAADEFRLTFDEINFGV 199

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S+ +++  +   +P+ ++ +F   + +Q + GGNL+E L  +S ++R R  +  K++ LS
Sbjct: 200 SVQDALMNLATRVPITDLRYFVIAVLIQRESGGNLAELLDKISGLIRARLTLLGKIRVLS 259

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAWI+  LPF  + ++   +PG++ VL  DP G M++G A   M+IGI VM  +I
Sbjct: 260 AEGRLSAWILSCLPFATALMINLVNPGFLTVLWTDPIGVMMVGTALGMMVIGIFVMSRII 319

Query: 184 NFDV 187
              V
Sbjct: 320 KIRV 323


>gi|16127171|ref|NP_421735.1| hypothetical protein CC_2941 [Caulobacter crescentus CB15]
 gi|221235972|ref|YP_002518409.1| TadB-like pilus assembly protein [Caulobacter crescentus NA1000]
 gi|7208429|gb|AAF40196.1|AF229646_8 TadB [Caulobacter crescentus CB15]
 gi|13424567|gb|AAK24903.1| hypothetical protein CC_2941 [Caulobacter crescentus CB15]
 gi|220965145|gb|ACL96501.1| TadB-related pilus assembly protein [Caulobacter crescentus NA1000]
          Length = 325

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 89/186 (47%), Positives = 125/186 (67%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K RT KF + F +A+DIIVR +++GLPV D + +I  +  +P+  EFR + E   
Sbjct: 139 LGFLAKGRTQKFTEAFADAVDIIVRGIKSGLPVHDCLKIIGKECPEPLAGEFRILTENVA 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ +  ++ +M   MP  E+ FF+ V+++Q + GGNL+EAL NLS +LR RK MK K++
Sbjct: 199 MGVPMDAALEKMYERMPTNELRFFAIVLAIQQKTGGNLAEALGNLSAVLRSRKLMKEKIK 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS EA ASA+IIG LP  V TL+  TSP YM  +  DPRGH++L  +A +M IGI VMR
Sbjct: 259 ALSAEAVASAFIIGCLPPGVVTLISVTSPAYMAPMFTDPRGHLMLLASAIWMSIGIFVMR 318

Query: 181 LMINFD 186
            MINF 
Sbjct: 319 NMINFK 324


>gi|118589707|ref|ZP_01547112.1| hypothetical protein SIAM614_04685 [Stappia aggregata IAM 12614]
 gi|118437793|gb|EAV44429.1| hypothetical protein SIAM614_04685 [Stappia aggregata IAM 12614]
          Length = 340

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 89/186 (47%), Positives = 132/186 (70%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    K+R   FL++ PN +DIIVR V+AGLP+SD + V+  ++ DPV +EFR++ ETQ 
Sbjct: 154 VASKRKRRFNAFLEELPNGVDIIVRGVKAGLPLSDCIKVVAREARDPVATEFRKITETQI 213

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+SL++++ ++   +PL E +FF+ V+++Q + GG L+EAL NLS++LR RK MK K++
Sbjct: 214 MGISLADAVGKLPERVPLPEANFFAIVVAIQQKAGGGLAEALNNLSKVLRGRKAMKRKIK 273

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS EAK+SA IIGSLPF V  ++Y  SP Y+ VL     G++++     +M  GIMVMR
Sbjct: 274 ALSAEAKSSAGIIGSLPFFVGGIMYLISPKYIMVLFETTAGNIIIAGGLFWMFCGIMVMR 333

Query: 181 LMINFD 186
            MINFD
Sbjct: 334 AMINFD 339


>gi|116671472|ref|YP_832405.1| type II secretion system protein [Arthrobacter sp. FB24]
 gi|116611581|gb|ABK04305.1| type II secretion system protein [Arthrobacter sp. FB24]
          Length = 316

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 99/186 (53%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L ++R A+F     + L ++   +RAG  V  A+  +  ++S+P  +EF RV+    
Sbjct: 130 LSFLTQRRRARFEAQLGDTLTMVSGGLRAGHSVLRAIDAVAQEASEPTATEFSRVVNETR 189

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  L +S++ +   M  ++ ++ +  I +  ++GG+L+E    +   +R+R  +K  V+
Sbjct: 190 LGRDLQDSLNDVSLRMKSEDFNWMAQAIEINREVGGDLAEVFDQVGETIRERSQIKGMVK 249

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E K SA I+ +LP  +  L+   +P Y   L   P G M+LG+A   M IG + +R
Sbjct: 250 ALSAEGKLSAIILMALPVLLFILIGLANPKYSGQLTGHPIGWMMLGIAVVMMTIGGLWIR 309

Query: 181 LMINFD 186
            + +  
Sbjct: 310 KISDLK 315


>gi|325291655|ref|YP_004277519.1| components of type IV pilus [Agrobacterium sp. H13-3]
 gi|325059508|gb|ADY63199.1| components of type IV pilus [Agrobacterium sp. H13-3]
          Length = 334

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 107/187 (57%), Positives = 152/187 (81%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  ++K+R  KFL++FPNALD++ RS+++GLP++DAV +I     +PV++EF+RV++ Q 
Sbjct: 148 LGFILKRRQKKFLEEFPNALDVMCRSIKSGLPLNDAVRLIASDGQEPVKTEFQRVVDAQQ 207

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ + + I RM+  +PL EVSFFSTVI++Q+Q GGNLSEAL+NLS++LR+R+ M+AKV 
Sbjct: 208 VGIGIPQGIERMMLTVPLFEVSFFSTVINIQAQAGGNLSEALSNLSKVLRERRKMRAKVN 267

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASA IIG+LPF V  LV+FTSP Y++VL  D RGH++LGV+  +MLIGI +MR
Sbjct: 268 ALSMEAKASAVIIGALPFIVMLLVHFTSPDYLSVLFTDMRGHIILGVSGLWMLIGIFIMR 327

Query: 181 LMINFDV 187
            MINFD+
Sbjct: 328 QMINFDI 334


>gi|299532600|ref|ZP_07045989.1| type II secretion system protein [Comamonas testosteroni S44]
 gi|298719403|gb|EFI60371.1| type II secretion system protein [Comamonas testosteroni S44]
          Length = 329

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/187 (32%), Positives = 114/187 (60%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++    +R  +     P ALD+I R++RAG   S ++ +   + ++P+  EFR V +  +
Sbjct: 143 LQRKRLQRLKRMERQLPEALDLIARALRAGHAFSASLQMAGEELTEPIAGEFRLVHDEIN 202

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL ++++ +   +P+ ++ +F   + +Q + GGNL+E L+NLSR++R+R  + AKV+
Sbjct: 203 YGTSLHQALTNLGERVPITDLRYFIVAVLIQRESGGNLTEMLSNLSRLIRERLKLHAKVR 262

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS + + SAWI+G +PF ++ L+   +P +M+ L  DP G  +L   AA M+IG++++R
Sbjct: 263 VLSADGRMSAWILGLMPFGLAALLNLMNPEFMHPLWTDPIGISILKWLAALMVIGLLLLR 322

Query: 181 LMINFDV 187
            +    V
Sbjct: 323 RIARIRV 329


>gi|258621454|ref|ZP_05716488.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573]
 gi|258586842|gb|EEW11557.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573]
          Length = 232

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 102/187 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  I  R ++F +  P+ALDII R ++AG PV+ A   +  + + P+  EF+      +
Sbjct: 46  LQKRIADRLSRFEEQLPDALDIIRRMLQAGQPVTQAFNEVGKEMAAPIGLEFKNTFNLLN 105

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  +  +I +M    P   +  F++ + +Q + GGNLSE L  + ++LR R  +  K++
Sbjct: 106 YGYDMRLAIMQMAERTPTVSMLAFASAVMLQKETGGNLSENLEKVGKVLRQRFKLTRKIK 165

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E++ SAWI+   PF +   + F +P Y+  L  D RG  ++ V    +  G + +R
Sbjct: 166 TLSAESRLSAWILVLSPFVLFIGLMFINPDYVTPLYQDARGMEMVSVGMVSLFFGAIWIR 225

Query: 181 LMINFDV 187
            +I+F+V
Sbjct: 226 KIISFEV 232


>gi|113866737|ref|YP_725226.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
 gi|113525513|emb|CAJ91858.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
          Length = 325

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 104/185 (56%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               KR  +      +A+D+I R++RAG   S A+ ++  +   P+  EFR   E  + G
Sbjct: 141 RQRAKRIKRMEAQLADAVDMISRALRAGHSFSGALGMVGQEMKAPIGPEFRTTFEEINYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           ++L E+++ +   +P+ ++ +F   + +Q + GGNL+E L  +  ++R+R  +  K++ L
Sbjct: 201 VALDEAMTNLAIRVPVGDLRYFVIAVLIQRESGGNLAEILDTIGTMVRERLKLFDKIRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E K SAW++G LPF  + L+   +PG+M VL  DP G  ++G A   M  G++ MR +
Sbjct: 261 SAEGKMSAWVLGLLPFGTAGLILVVNPGFMKVLWEDPIGLRMIGGALVSMTFGVLWMRKI 320

Query: 183 INFDV 187
           I   V
Sbjct: 321 IRIRV 325


>gi|304392380|ref|ZP_07374321.1| type II secretion system protein [Ahrensia sp. R2A130]
 gi|303295484|gb|EFL89843.1| type II secretion system protein [Ahrensia sp. R2A130]
          Length = 332

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 89/186 (47%), Positives = 125/186 (67%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   KKR A F   FPNA+D+IVR +++GLP++D + +I   S +PVR EFR++IE   
Sbjct: 146 VKRKRKKRFAAFTKTFPNAIDVIVRGIKSGLPLNDCLRIIATDSDEPVRGEFRKLIEAAQ 205

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ + E+  R+ + +P  E +FFS VI++QS  GGNLSEAL NLS++LR+R+ M  K+Q
Sbjct: 206 MGIPVPEACERLYKSIPTSETNFFSIVIAIQSSAGGNLSEALGNLSKVLRERRKMADKIQ 265

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A S EAK S  IIG+LPF V+ +V+ TSP Y+  L     GH +L   A  M  GI+VM+
Sbjct: 266 AFSSEAKTSTMIIGALPFVVAIMVFATSPYYLVPLWTTTGGHKVLFFCAVSMGFGILVMK 325

Query: 181 LMINFD 186
            MINF 
Sbjct: 326 KMINFK 331


>gi|94309585|ref|YP_582795.1| type II secretion system protein [Cupriavidus metallidurans CH34]
 gi|93353437|gb|ABF07526.1| flp pilus assembly protein TadB [Cupriavidus metallidurans CH34]
          Length = 325

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 60/185 (32%), Positives = 107/185 (57%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L  KR  +     P+A+D+I R++RAG   + A+ ++  +   P+  EFR   E  + G
Sbjct: 141 RLRTKRLKQMEVQLPDAVDMISRALRAGHSFAGALGMVGQEIKAPLGPEFRTTFEEINYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           ++L E+++ +   +P+ ++ +F   + +Q + GGNL+E L  +  ++R+R  +  K++ L
Sbjct: 201 VALDEAMTNLAMRVPVGDLRYFVIAVLIQRESGGNLAEILDTIGTMVRERLKLFDKIRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAWI+G LPF  + L+   +PG+M VL  DP G  ++G A   M+ G++ MR +
Sbjct: 261 SAEGRLSAWILGLLPFGTAGLIMVVNPGFMRVLWEDPIGWRMVGAAMTSMIFGVLWMRKI 320

Query: 183 INFDV 187
           I   V
Sbjct: 321 IRIRV 325


>gi|220913394|ref|YP_002488703.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
 gi|219860272|gb|ACL40614.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
          Length = 310

 Score =  122 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 94/186 (50%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L  KR A F     + L ++   +RAG  +  A+     +S  P   E RRVI    
Sbjct: 124 VGFLAGKRRAAFDGQLGDTLQLLSGGLRAGHSILRAIDAAAAESQKPTSEEMRRVITETS 183

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  L  +++     M  ++  + S  I +  ++GGNL++ L  ++  +R+R  +K  ++
Sbjct: 184 LGRDLLAALNDTADRMKNEDFVWISQAIQINREVGGNLADVLDQVNETIRERAEIKGHIK 243

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ E K SA+I+ ++PF +  ++   SP YMN +   P G  ++  +   M +G + MR
Sbjct: 244 ALAAEGKFSAYILIAMPFGIVAMLLAVSPTYMNSMFTHPLGWAMIVASFVLMTVGALWMR 303

Query: 181 LMINFD 186
            +I+  
Sbjct: 304 KIIDLK 309


>gi|114568974|ref|YP_755654.1| type II secretion system protein [Maricaulis maris MCS10]
 gi|114339436|gb|ABI64716.1| type II secretion system protein [Maricaulis maris MCS10]
          Length = 327

 Score =  122 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 85/187 (45%), Positives = 126/187 (67%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L  +R  +F  +F NALD+I R V++GLP+++ + ++  +S +PV++EF +++E   
Sbjct: 141 LGFLRGRRQKQFSGEFANALDVITRGVKSGLPLNECLKILSVESPEPVKTEFAKLVEGIA 200

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+SL + + RM   MPL E++FF TV+ +Q + GGNL+E L NLS +LR RK M+ K+ 
Sbjct: 201 VGVSLPDGLDRMCERMPLPELNFFRTVLIIQQKTGGNLAETLGNLSVVLRSRKMMREKIG 260

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS EAK+SA IIGSLP  V  +VY T+P YM  +   P G ++L     +M IGIMVMR
Sbjct: 261 ALSSEAKSSAAIIGSLPPGVMGIVYATTPSYMGQMFTHPTGQLMLLGGLTWMFIGIMVMR 320

Query: 181 LMINFDV 187
            MINF +
Sbjct: 321 GMINFKI 327


>gi|325964125|ref|YP_004242031.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470212|gb|ADX73897.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 310

 Score =  122 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 95/186 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L  KR A F     + L ++   +RAG  +  A+     +S  P   E RRVI    
Sbjct: 124 LGFLAGKRRAAFDSQLGDTLQLLSGGLRAGHSILRAIDAAAAESQKPTSEEMRRVITETS 183

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  L  +++     M  ++  + S  I +  ++GGNL++ L      +R+R  +K  ++
Sbjct: 184 LGRDLLAALNDTAERMQNEDFVWISQAIQINREVGGNLADVLDQTGETIRERSEIKGHIK 243

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ E K SA+I+ ++PF +  ++   SP YMN + + P G  ++GV+   M IG + MR
Sbjct: 244 ALAAEGKFSAYILIAMPFGIVAMLVAMSPTYMNSMFSHPLGWAMIGVSFVLMTIGALWMR 303

Query: 181 LMINFD 186
            +I+  
Sbjct: 304 KIIDLK 309


>gi|53723214|ref|YP_112199.1| hypothetical protein BPSS2197 [Burkholderia pseudomallei K96243]
 gi|126444529|ref|YP_001064083.1| type II secretion system protein [Burkholderia pseudomallei 668]
 gi|126455490|ref|YP_001076996.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
 gi|167725255|ref|ZP_02408491.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei DM98]
 gi|167744182|ref|ZP_02416956.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 14]
 gi|167821381|ref|ZP_02453061.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 91]
 gi|167829723|ref|ZP_02461194.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 9]
 gi|226194129|ref|ZP_03789729.1| type II secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237509857|ref|ZP_04522572.1| putative membrane protein [Burkholderia pseudomallei MSHR346]
 gi|242313100|ref|ZP_04812117.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
 gi|52213628|emb|CAH39682.1| putative membrane protein [Burkholderia pseudomallei K96243]
 gi|126224020|gb|ABN87525.1| type II secretion system protein [Burkholderia pseudomallei 668]
 gi|126229258|gb|ABN92671.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
 gi|225933822|gb|EEH29809.1| type II secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|235002062|gb|EEP51486.1| putative membrane protein [Burkholderia pseudomallei MSHR346]
 gi|242136339|gb|EES22742.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
          Length = 325

 Score =  122 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 109/185 (58%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +R  K     P+A D+I R++RAG   S A++++ G+ ++P+  EFR   +  + G
Sbjct: 141 RCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +SL E++  +   +P+ ++ +F   + +Q + GGNL+E L  +++++R+R  +  K++ L
Sbjct: 201 VSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E K SA I+  LPF  + L+   +P +++VL  DP G +L+GV  A M  GI+ MR +
Sbjct: 261 SAEGKLSALILTLLPFGTAALLSIMNPDFISVLWEDPAGVLLVGVTIASMAFGILWMRHI 320

Query: 183 INFDV 187
           I   V
Sbjct: 321 IRIRV 325


>gi|114798049|ref|YP_761687.1| secretion system protein [Hyphomonas neptunium ATCC 15444]
 gi|114738223|gb|ABI76348.1| secretion system protein [Hyphomonas neptunium ATCC 15444]
          Length = 339

 Score =  122 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 90/187 (48%), Positives = 127/187 (67%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  LIK R  K ++ F +ALDIIVR VR+GLP+++ + VI  +S +P+R EF    +   
Sbjct: 153 LNFLIKGRHTKMINQFADALDIIVRGVRSGLPLNECIRVIAKESPEPLRKEFLTFADNLA 212

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G  L  S++ + + +PLQE++FF+ V+ +QS+ GGNLSEAL NLS ++R RK M+ KV+
Sbjct: 213 MGAGLERSLAALYKRLPLQEINFFAIVLIIQSKAGGNLSEALHNLSTVIRSRKMMREKVK 272

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS EAKASA IIGSLP  V  +V+ T+P Y+  L     GH++L VA   M  GI VMR
Sbjct: 273 ALSSEAKASAMIIGSLPIAVGVMVFLTTPDYIMTLFTTETGHVILVVAVGMMGSGITVMR 332

Query: 181 LMINFDV 187
            M+NFD+
Sbjct: 333 NMMNFDM 339


>gi|134281818|ref|ZP_01768525.1| type II secretion system protein [Burkholderia pseudomallei 305]
 gi|167908137|ref|ZP_02495342.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei NCTC
           13177]
 gi|134246880|gb|EBA46967.1| type II secretion system protein [Burkholderia pseudomallei 305]
          Length = 325

 Score =  122 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 109/185 (58%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +R  K     P+A D+I R++RAG   S A++++ G+ ++P+  EFR   +  + G
Sbjct: 141 RCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +SL E++  +   +P+ ++ +F   + +Q + GGNL+E L  +++++R+R  +  K++ L
Sbjct: 201 VSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E K SA I+  LPF  + L+   +P +++VL  DP G +L+GV  A M  GI+ MR +
Sbjct: 261 SAEGKLSALILTLLPFGTAALLSIMNPDFISVLWEDPAGMLLVGVTIASMAFGILWMRHI 320

Query: 183 INFDV 187
           I   V
Sbjct: 321 IRIRV 325


>gi|56477521|ref|YP_159110.1| putative Flp pilus assembly protein [Aromatoleum aromaticum EbN1]
 gi|56313564|emb|CAI08209.1| putative Flp pilus assembly protein [Aromatoleum aromaticum EbN1]
          Length = 324

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 100/185 (54%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +   +F    P ALD++ R++RAG     A+ ++  +  DP+  EFR + +  + G
Sbjct: 140 RARNQHMQRFELQLPEALDLMGRALRAGHAFPTAIKMVAEEMKDPIGGEFRILFDEMNYG 199

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +    ++  +       ++S+F   + +Q   GGNL+E L N+S+I+R R  +  +++ L
Sbjct: 200 VPQQTAMLNLASRTDSTDLSYFVIAVLIQRDSGGNLAELLDNISKIVRARLKLYGEIRTL 259

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E K SAWI+G LPF  + L+   +PG+M VL  DP G   +  A   M++G++ MR +
Sbjct: 260 SAEGKLSAWILGCLPFATAALINIVNPGFMKVLWEDPAGINFIYGAMGMMVLGVVWMRKI 319

Query: 183 INFDV 187
           I   V
Sbjct: 320 IRIRV 324


>gi|76818607|ref|YP_336474.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 1710b]
 gi|167851190|ref|ZP_02476698.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei B7210]
 gi|167899820|ref|ZP_02487221.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 7894]
 gi|167916484|ref|ZP_02503575.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 112]
 gi|167924341|ref|ZP_02511432.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei BCC215]
 gi|254187128|ref|ZP_04893643.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|254263188|ref|ZP_04954053.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
 gi|254296490|ref|ZP_04963946.1| type II secretion system protein [Burkholderia pseudomallei 406e]
 gi|76583080|gb|ABA52554.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 1710b]
 gi|157806462|gb|EDO83632.1| type II secretion system protein [Burkholderia pseudomallei 406e]
 gi|157934811|gb|EDO90481.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|254214190|gb|EET03575.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
          Length = 325

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 109/185 (58%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +R  K     P+A D+I R++RAG   S A++++ G+ ++P+  EFR   +  + G
Sbjct: 141 RCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +SL E++  +   +P+ ++ +F   + +Q + GGNL+E L  +++++R+R  +  K++ L
Sbjct: 201 VSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E K SA I+  LPF  + L+   +P +++VL  DP G +L+GV  A M  GI+ MR +
Sbjct: 261 SAEGKLSALILTLLPFGTAALLSIMNPDFISVLWEDPAGVLLVGVTIASMAFGILWMRHI 320

Query: 183 INFDV 187
           I   V
Sbjct: 321 IRIRV 325


>gi|296122168|ref|YP_003629946.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
 gi|296014508|gb|ADG67747.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
          Length = 321

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 104/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR  +F    P+A++++ R++R+G  ++  + ++  +   P+   FR   ETQ+
Sbjct: 135 LSFRRKKRFKQFAKQLPDAMELMGRALRSGHSLASGLHLVCDEMPPPISQVFRSAYETQN 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ +  ++   ++ MP  +  FF T +++Q Q GG+L+E L  +S ++R+R  +   VQ
Sbjct: 195 LGVPVESALKESLKKMPNLDYKFFVTAVAIQRQTGGDLAEILDKISEVIRERFKILGTVQ 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ E + S  ++ ++P  +   VY+ +P Y+ VL     G  ++ V     ++G + ++
Sbjct: 255 ALTGEGRLSGAVLMAMPIAIFFAVYYLNPNYVMVLFTTDLGKKMIAVGIVMQILGAVAIK 314

Query: 181 LMINFDV 187
            +I+  V
Sbjct: 315 KIIDIKV 321


>gi|73542333|ref|YP_296853.1| type II secretion system protein [Ralstonia eutropha JMP134]
 gi|72119746|gb|AAZ62009.1| type II secretion system protein [Ralstonia eutropha JMP134]
          Length = 325

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 59/187 (31%), Positives = 108/187 (57%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L  KR  +     P+A+D+I R++RAG   S A+ ++  +   P+  EFR   E  +
Sbjct: 139 IMRLRAKRIQQMESQLPDAVDMIARALRAGHSFSGALGMVGQEMKAPIAPEFRTTFEEIN 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G++L E+++ +   +P+ ++ +F   + +Q + GGNL+E L  +  ++R+R  + AK++
Sbjct: 199 YGIALDEAMTNLAIRVPVGDLRYFVIAVLIQRESGGNLAEILDTIGNMVRERLKLFAKIR 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + SAW++G LPF    ++   +P +M VL  DP G  ++G A   M++G++ MR
Sbjct: 259 VLSAEGRMSAWVLGLLPFATGGMILVVNPDFMKVLWEDPIGLKMVGAAVGMMMLGVLWMR 318

Query: 181 LMINFDV 187
            +I   V
Sbjct: 319 KIIRIRV 325


>gi|329847257|ref|ZP_08262285.1| bacterial type II secretion system protein F domain protein
           [Asticcacaulis biprosthecum C19]
 gi|328842320|gb|EGF91889.1| bacterial type II secretion system protein F domain protein
           [Asticcacaulis biprosthecum C19]
          Length = 337

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 81/186 (43%), Positives = 123/186 (66%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  +   R  KF ++FPNA+DI+VR +++GLPV D + +I  +S  P+  EF R++E   
Sbjct: 151 LGMMATGRLKKFTEEFPNAMDILVRGIKSGLPVHDGLKIISKESPAPLGPEFLRLVENVG 210

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+S+  ++ +M   +P  E+ FF+ VI++Q++ GGNL+EAL NLS +LR RK M+ K++
Sbjct: 211 VGMSVEGALEKMSERIPSPELRFFTIVIAIQAKTGGNLAEALNNLSTVLRARKMMREKIK 270

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS EA ASA IIG LP  V  ++  T P Y+  +  DPRG ++L   A +M +GI +MR
Sbjct: 271 ALSSEAIASASIIGVLPPGVGVMISLTRPEYIGGMFTDPRGQIMLLGGAIWMALGIFMMR 330

Query: 181 LMINFD 186
            MINF 
Sbjct: 331 KMINFK 336


>gi|149186258|ref|ZP_01864572.1| hypothetical protein ED21_31014 [Erythrobacter sp. SD-21]
 gi|148830289|gb|EDL48726.1| hypothetical protein ED21_31014 [Erythrobacter sp. SD-21]
          Length = 323

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 67/187 (35%), Positives = 118/187 (63%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   IKKRT +F   F +A++++VR +R+GLPV++ + V+  +   PV  EF+ ++E   
Sbjct: 137 VGRAIKKRTNQFNVKFADAIELLVRGLRSGLPVTETLNVVSQEIPGPVGEEFKSIVERIK 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G ++ ES+      + + E +FF   +++Q + GGNL+E L+NL+ +LR R  MK K++
Sbjct: 197 IGRTMEESLQETADRLGIPEFNFFCITLAIQRETGGNLAETLSNLADVLRKRTQMKLKIK 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E+KASA+I+GSLPF V  L+++ +P Y+     D R  +       +M IG+ +M 
Sbjct: 257 AMSSESKASAYIVGSLPFIVFGLIFWINPEYLGGFFTDDRLIVTGLGGLTWMGIGVFIMA 316

Query: 181 LMINFDV 187
            M++F++
Sbjct: 317 KMVSFEI 323


>gi|311743552|ref|ZP_07717358.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
 gi|311312682|gb|EFQ82593.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
          Length = 314

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 94/187 (50%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K    KR  +F       L ++  S+RAG     A+      +  P++ E  R++    
Sbjct: 128 VKMRTAKRRREFNAQLDGMLQMLASSMRAGQSFQQAMGSCARDADSPMQDELTRILNENR 187

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  +  S++     M  ++  + +  + +  + GGNL+E +  +++++RDR  ++ KV 
Sbjct: 188 LGRDIIASMNDTAERMECEDFVWLAEAVELTRESGGNLNEIIDRVAQMIRDRSEIREKVH 247

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A + E + S++I+ SLP  ++    F +PGY++ L +   G  L+G +     I  + MR
Sbjct: 248 AYASEGRFSSYILMSLPLLIAVAYSFITPGYLDPLFSTGLGLALVGGSVVMYTIAFLWMR 307

Query: 181 LMINFDV 187
           ++++  V
Sbjct: 308 IIVDIKV 314


>gi|167648148|ref|YP_001685811.1| type II secretion system protein [Caulobacter sp. K31]
 gi|167350578|gb|ABZ73313.1| type II secretion system protein [Caulobacter sp. K31]
          Length = 325

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 87/186 (46%), Positives = 129/186 (69%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  + K RT KF + F +A+DIIVR +++GLPV+D + +I  +  +P+  EFR ++E   
Sbjct: 139 VGMMAKARTKKFTEAFSDAIDIIVRGIKSGLPVNDCLKIIGKECPEPLAGEFRVLVENTG 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+S+ +++ RM   MP  E+ FF+ V+++Q++ GGNL+EAL NLS +LR RK M  K++
Sbjct: 199 MGMSMDQALERMYERMPTNELRFFTIVLTIQAKTGGNLAEALGNLSTVLRARKLMGEKIK 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS EA ASA+IIG+LP  V  L+  T+P YM  +  D RGH++L VAA +M +GI VMR
Sbjct: 259 ALSAEAVASAFIIGALPPGVVILISVTAPTYMAPMFTDQRGHLMLMVAAFWMTVGIFVMR 318

Query: 181 LMINFD 186
            MINF 
Sbjct: 319 KMINFK 324


>gi|239908017|ref|YP_002954758.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
 gi|239797883|dbj|BAH76872.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
          Length = 326

 Score =  121 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 114/185 (61%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               KR A F    P AL+++ R++RAG   +  + ++V + +DP+R EF+  +E  + G
Sbjct: 142 MRKDKRMADFERQLPEALELVGRALRAGHTFTSGMGMVVSEFADPIRVEFQTTLEEINFG 201

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + ++ ++  ++  +   +++FF   + +Q++ GGNL+E + N+S ++R+R  +K ++Q L
Sbjct: 202 MGVTTALDNLMDRVDCPDLNFFVVSVKIQNESGGNLAEIIGNISGLIRERFKLKGRIQVL 261

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + +AW++  LPF V+ ++ F +PGY+ +L  DP G ++    A  + +GI+V+R M
Sbjct: 262 SAEGRMAAWVLCLLPFGVAAVIQFVNPGYLGLLFTDPMGRIMSYGVAGLITMGILVIRKM 321

Query: 183 INFDV 187
           +  +V
Sbjct: 322 VRIEV 326


>gi|217424158|ref|ZP_03455657.1| type II secretion system protein [Burkholderia pseudomallei 576]
 gi|254192376|ref|ZP_04898815.1| type II secretion system protein [Burkholderia pseudomallei S13]
 gi|169649134|gb|EDS81827.1| type II secretion system protein [Burkholderia pseudomallei S13]
 gi|217392623|gb|EEC32646.1| type II secretion system protein [Burkholderia pseudomallei 576]
          Length = 330

 Score =  121 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 109/185 (58%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +R  K     P+A D+I R++RAG   S A++++ G+ ++P+  EFR   +  + G
Sbjct: 146 RCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYG 205

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +SL E++  +   +P+ ++ +F   + +Q + GGNL+E L  +++++R+R  +  K++ L
Sbjct: 206 VSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVL 265

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E K SA I+  LPF  + L+   +P +++VL  DP G +L+GV  A M  GI+ MR +
Sbjct: 266 SAEGKLSALILTLLPFGTAALLSIMNPDFISVLWEDPAGVLLVGVTIASMAFGILWMRHI 325

Query: 183 INFDV 187
           I   V
Sbjct: 326 IRIRV 330


>gi|260462612|ref|ZP_05810818.1| type II secretion system protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259031518|gb|EEW32788.1| type II secretion system protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 324

 Score =  121 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 62/186 (33%), Positives = 110/186 (59%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++    KR  KF    P+ALD+IVRS+RAG P + A+ ++  +  DP+ +EF  V +   
Sbjct: 138 LRRARNKRIQKFAAQLPDALDMIVRSLRAGHPTTVAIGLVAREMPDPLGTEFGIVSDEIT 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            GLSL +++ ++ + +  + +   S  +S+Q++ GGNL+E LANLS +LR+R+ ++ K++
Sbjct: 198 FGLSLEQAVRKLSQRVGFEGLHLLSVSLSIQAKTGGNLTEILANLSSVLRERRKLRMKIK 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E + SAWII   P  +  ++   +P +   + + P    +  +   + L+G  +M 
Sbjct: 258 ALSAEGRMSAWIISLFPVVMFGILLLVAPKFYGEVWDSPLILPVFVIFGLWALLGDFIMY 317

Query: 181 LMINFD 186
            M+NFD
Sbjct: 318 RMVNFD 323


>gi|304320651|ref|YP_003854294.1| hypothetical protein PB2503_05392 [Parvularcula bermudensis
           HTCC2503]
 gi|303299553|gb|ADM09152.1| hypothetical protein PB2503_05392 [Parvularcula bermudensis
           HTCC2503]
          Length = 330

 Score =  121 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 85/187 (45%), Positives = 128/187 (68%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  KF ++F NA+D+IVR V++GLPV++ + +I   +  PV+ EF+ ++E Q 
Sbjct: 144 LYQTRRKRQKKFENEFSNAIDVIVRGVKSGLPVNECLKIISRDAQSPVKEEFQLLVEGQR 203

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GL+L +S+ R+   MP+ +V+FF+ V+ +Q Q GGNL++AL NLS +LR RK M  K+ 
Sbjct: 204 IGLTLEQSLERLYNRMPISDVNFFAIVLVIQQQTGGNLADALGNLSTVLRSRKTMLGKIA 263

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASA I+ ++PF VS LVY  +P Y+  L +   G  +L  A  +MLIGI+VM+
Sbjct: 264 ALSMEAKASAAILAAMPFFVSGLVYLAAPDYIAPLFSTQTGQFMLMGAGMWMLIGIVVMK 323

Query: 181 LMINFDV 187
            MI+  V
Sbjct: 324 NMISIKV 330


>gi|317123666|ref|YP_004097778.1| type II secretion system F domain [Intrasporangium calvum DSM
           43043]
 gi|315587754|gb|ADU47051.1| Type II secretion system F domain [Intrasporangium calvum DSM
           43043]
          Length = 652

 Score =  121 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 96/172 (55%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P +L ++  S+R+G  +  A+  I   + DP+  EF R +    +G  +++++ RM   
Sbjct: 481 LPQSLMLVSTSLRSGFGLPQALDSIAKDAPDPLAKEFSRGLAETRIGTDIADALERMADR 540

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
           M  + +      I +Q ++GGNL+E L   +R LR+R+++  +V+ALS E + SA+I+ +
Sbjct: 541 MGSRSMRMAVMAIRIQREVGGNLAETLETTARTLRERESLHRQVRALSAEGRLSAYILIA 600

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           LP  +   + + + GY+++L   P G M+L      ++ GI  MR ++  +V
Sbjct: 601 LPIGLFFYMMWVNYGYISLLWTHPLGLMMLVGGIVLLIGGIFWMRQVVKIEV 652


>gi|149911402|ref|ZP_01900020.1| hypothetical Flp pilus assembly protein TadB [Moritella sp. PE36]
 gi|149805510|gb|EDM65515.1| hypothetical Flp pilus assembly protein TadB [Moritella sp. PE36]
          Length = 321

 Score =  121 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 59/187 (31%), Positives = 100/187 (53%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I KR  +    FP ALDI+ R ++AG   SD++ ++  +    +  EF+ +    +
Sbjct: 135 LNRNINKRMERIEQQFPEALDILKRGLQAGYAFSDSIKLVYEELEGELSDEFKLMFNRIN 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  +  ++   V+ +P      F + +S+  + GGNL+E + NLSRI+R R   K +V+
Sbjct: 195 FGNDVHTALLSFVKRVPSTSAMAFCSSVSIHKETGGNLAENIDNLSRIIRQRFTFKRRVK 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + S W++   PF +  ++Y +SP Y ++LIN P G  LL      ML+GI  + 
Sbjct: 255 TLSAEGRLSGWVLVLTPFVLFAVLYISSPDYASILINTPEGLNLLKWGGIGMLLGIWWIS 314

Query: 181 LMINFDV 187
            +I  +V
Sbjct: 315 KLIKIEV 321


>gi|317122044|ref|YP_004102047.1| type II secretion system F domain [Thermaerobacter marianensis DSM
           12885]
 gi|315592024|gb|ADU51320.1| Type II secretion system F domain [Thermaerobacter marianensis DSM
           12885]
          Length = 401

 Score =  120 bits (302), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 100/187 (53%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R   F    P+AL ++  ++++G     A  V+  +   P+  EF  +++   
Sbjct: 215 VARRYRQRLQAFDAQLPDALTLMANALKSGYSFLQAADVVAREMPAPIAEEFGWLVKETR 274

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           + + L ++++ ++  +P  ++    T + +Q Q+GGNL+  L   +  +R+R  ++ +++
Sbjct: 275 VNIPLEDALANLLDRVPSPDLDLVVTAVLIQKQVGGNLAGVLERTAETIRERVRLQGQIR 334

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L+ + + S WI+GSLP  +  L+   +P Y+  L+  P G MLLG      + G++V+R
Sbjct: 335 TLTAQGRLSGWIVGSLPVALLVLLSAMNPAYLQPLLATPVGWMLLGAGVVMEVAGVLVIR 394

Query: 181 LMINFDV 187
            +I  D+
Sbjct: 395 ALIRVDI 401


>gi|168702878|ref|ZP_02735155.1| secretion system protein TadB [Gemmata obscuriglobus UQM 2246]
          Length = 319

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 103/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +      R   F    P+A++++ R++RAG  ++  + V+  +   P+  EF RV E Q+
Sbjct: 133 LHMKRSSRLKAFAAQLPDAMELVARALRAGHSLAAGMHVVAEEMPAPICKEFGRVYEEQN 192

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L E++  M   +P  ++ FF T +++Q Q GG+L+E L  +  I+R+R  +  +V+
Sbjct: 193 LGIPLEEALKGMCDRVPNLDLKFFVTSVAIQRQTGGDLAEILDRIGHIIRERFKILGQVK 252

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ E + S  ++ +LP  +  ++ +T P Y+ +L  D  G  +   A   MLIG   ++
Sbjct: 253 ALTAEGRLSGVVLIALPIGLFVMMLWTKPDYVEMLWKDDLGIKMSIGAIVLMLIGSYAIK 312

Query: 181 LMINFDV 187
            +++  V
Sbjct: 313 KIVDIKV 319


>gi|78186666|ref|YP_374709.1| TadB protein [Chlorobium luteolum DSM 273]
 gi|78166568|gb|ABB23666.1| TadB protein [Chlorobium luteolum DSM 273]
          Length = 322

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 60/176 (34%), Positives = 103/176 (58%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           F D  P ALD I RS+RAG  ++ A+ ++  +  DP+  EF+ V +    G+   ++I  
Sbjct: 147 FGDKLPEALDYISRSMRAGHSLTSAIGMLGTEFRDPIGHEFKTVFDEIGFGIPFKDAIGE 206

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +   +   +++FF   + +Q + GGNL+E L  LS  +R R  ++ K++ LS E +ASAW
Sbjct: 207 LADRVQSTDLNFFVISLQIQHETGGNLTELLDGLSNTIRQRIKLRGKIRTLSSEGRASAW 266

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           ++GS+PF +  ++   +PGY++VL   P GH L   A   M +G  +++ ++NF V
Sbjct: 267 VLGSMPFALVAILTLINPGYISVLWTTPEGHKLTLSALGLMSVGFFLLKRIVNFKV 322


>gi|254506705|ref|ZP_05118845.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16]
 gi|219550286|gb|EED27271.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16]
          Length = 322

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 63/187 (33%), Positives = 103/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I  R A F +  P ALDI+ R ++AG PV+ A   +  +  DP+ +EF+      +
Sbjct: 136 LNKRISDRLASFEEQLPEALDIMRRMLQAGQPVTQAFNEVGNEMPDPIGTEFKNTFNLLN 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  +  +I +M    P   +  FS+ + +Q + GGNLSE L  +S++LR R  ++ K++
Sbjct: 196 FGYDMRMAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSKVLRSRFKLQRKIK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E++ SAWI+   PF +   + F +P Y+  L  DPRG  L+      + IG + +R
Sbjct: 256 TLSAESRLSAWILVLSPFLLFLFLTFINPSYVEPLYTDPRGMTLVSGGIISLFIGSIWIR 315

Query: 181 LMINFDV 187
            +INF+V
Sbjct: 316 NIINFEV 322


>gi|254182576|ref|ZP_04889170.1| type II secretion system protein [Burkholderia pseudomallei 1655]
 gi|184213111|gb|EDU10154.1| type II secretion system protein [Burkholderia pseudomallei 1655]
          Length = 330

 Score =  120 bits (301), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 109/185 (58%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +R  K     P+A D+I R++RAG   S A++++ G+ ++P+  EFR   +  + G
Sbjct: 146 RCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYG 205

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +SL E++  +   +P+ ++ +F   + +Q + GGNL+E L  +++++R+R  +  K++ L
Sbjct: 206 VSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVL 265

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E K SA I+  LPF  + L+   +P +++VL  DP G +L+GV  A M  GI+ MR +
Sbjct: 266 SAEGKLSALILTLLPFATAALLSIMNPDFISVLWEDPAGVLLVGVTIASMAFGILWMRHI 325

Query: 183 INFDV 187
           I   V
Sbjct: 326 IRIRV 330


>gi|99082190|ref|YP_614344.1| type II secretion system protein [Ruegeria sp. TM1040]
 gi|99038470|gb|ABF65082.1| hypothetical protein TM1040_2350 [Ruegeria sp. TM1040]
          Length = 322

 Score =  120 bits (301), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 98/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR AK  +  P+ ++++VRS+R G P S AV ++  +  DP+ +EF  + +   
Sbjct: 136 VNSKAKKRMAKIEEQLPDGVELMVRSLRVGHPFSSAVQIVAKEVEDPLATEFGIIADECA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   + +Q++ F +  +++Q Q GGNL+E LA L++++R R  +  +V+
Sbjct: 196 YGRDVGEALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EA+ S   +   P  V      + P Y + +I+ P       +    +   I VMR
Sbjct: 256 AITAEAQWSGKFLSGFPLFVLAGTLVSDPHYYDNVIDHPWFMPACFIVGGMLTANIFVMR 315

Query: 181 LMINFDV 187
            + N  V
Sbjct: 316 KLTNIQV 322


>gi|239814536|ref|YP_002943446.1| type II secretion system protein [Variovorax paradoxus S110]
 gi|239801113|gb|ACS18180.1| type II secretion system protein [Variovorax paradoxus S110]
          Length = 330

 Score =  120 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 64/187 (34%), Positives = 110/187 (58%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + H   +R A      P+ALD++ R++RAG   + +V +I  + S+P+  EFR V +   
Sbjct: 144 LNHRRSRRLAHLERQLPDALDLVTRALRAGHSFASSVQMIGDEMSEPIAGEFRMVADEVG 203

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+SL ++++ M   +PL ++ +F   + +Q   GGNL+E L NLSR++RDR  + A+V+
Sbjct: 204 FGVSLQQALTNMSERVPLTDLRYFVVSVLIQRDSGGNLTEVLGNLSRLIRDRLKLLARVR 263

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + SAWI+G +PF +  L+   +P +M+ L  DP G   +      M+IG +++R
Sbjct: 264 VLSAEGRLSAWILGLMPFALVALLNAFNPEFMSPLWTDPIGITAVKYMLGLMVIGAVILR 323

Query: 181 LMINFDV 187
            ++   V
Sbjct: 324 KIVKIRV 330


>gi|323499917|ref|ZP_08104876.1| Flp pilus assembly protein TadB [Vibrio sinaloensis DSM 21326]
 gi|323315158|gb|EGA68210.1| Flp pilus assembly protein TadB [Vibrio sinaloensis DSM 21326]
          Length = 322

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 63/187 (33%), Positives = 103/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I  R ++F +  P ALDI+ R ++AG PV+ A   +  +  DP+ +EF+      +
Sbjct: 136 LNKRISDRLSQFEEQLPEALDIMRRMLQAGQPVTQAFNEVGNEMPDPIGTEFKNTFNLLN 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  +  +I +M    P   +  FS+ + +Q + GGNLSE L  +SR+LR R  ++ K++
Sbjct: 196 FGYDMRMAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSRVLRSRFKLQRKIK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E++ SAWI+   PF +   +   +P Y+  L  DPRG  L+      + IG M +R
Sbjct: 256 TLSAESRLSAWILVLSPFLLFLFLSIINPTYVEPLYTDPRGMTLVSGGIVSLFIGSMWIR 315

Query: 181 LMINFDV 187
            +INF+V
Sbjct: 316 NIINFEV 322


>gi|307943149|ref|ZP_07658494.1| type II secretion system protein [Roseibium sp. TrichSKD4]
 gi|307773945|gb|EFO33161.1| type II secretion system protein [Roseibium sp. TrichSKD4]
          Length = 340

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 88/186 (47%), Positives = 132/186 (70%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR   F+++ PN +DIIVR V+AGLP+ D V V+  ++ DPV +EF +++ETQ 
Sbjct: 154 INRRRKKRFTAFMEELPNGVDIIVRGVKAGLPLGDCVRVVSTEAKDPVSTEFAKILETQK 213

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+SL+E+  ++   +PL E +FF+ V+++Q   GG LSEAL NLSR+LR RK +K K+ 
Sbjct: 214 MGVSLAEAFMKLPERVPLPEANFFAIVVAIQQSSGGGLSEALNNLSRVLRGRKALKRKIV 273

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS EAK+SA IIG++P  +S  ++F +P Y+N+L+    GH+++     +MLIGI+VMR
Sbjct: 274 ALSSEAKSSAGIIGAMPVLISLALFFIAPDYINILLTTTAGHIVIAGCITWMLIGILVMR 333

Query: 181 LMINFD 186
            MINFD
Sbjct: 334 QMINFD 339


>gi|27365113|ref|NP_760641.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
 gi|37680836|ref|NP_935445.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
 gi|320155496|ref|YP_004187875.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
 gi|27361259|gb|AAO10168.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
 gi|37199585|dbj|BAC95416.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
 gi|319930808|gb|ADV85672.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
          Length = 321

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 58/187 (31%), Positives = 101/187 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  I  R  +F +  P+ALDII R ++AG PV+ A   +  + + P+  EF+      +
Sbjct: 135 LQKRITDRLNRFEEQLPDALDIIRRMLQAGQPVTQAFNEVGNEMAPPIGIEFKNTFNLLN 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  +  +I +M    P   +  FS+ + +Q + GGNLSE L  + ++LR R  +  K++
Sbjct: 195 YGYDMRLAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVGKVLRQRFKLTRKIK 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +S E++ SAWI+   PF +   + F +P Y+  L  D RG  L+ +    +  G + +R
Sbjct: 255 TISAESRLSAWILVLSPFVLFVGLMFINPEYVKPLYQDERGMELVTMGIVSLFFGAIWIR 314

Query: 181 LMINFDV 187
            +INF+V
Sbjct: 315 NIINFEV 321


>gi|220922535|ref|YP_002497837.1| type II secretion system protein [Methylobacterium nodulans ORS
           2060]
 gi|219947142|gb|ACL57534.1| type II secretion system protein [Methylobacterium nodulans ORS
           2060]
          Length = 314

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 60/187 (32%), Positives = 107/187 (57%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           M +L ++R A F +  P  L+I+VRS+RAG P+  A  +   Q  DP  SE     +   
Sbjct: 128 MYYLRRRRVAAFGEQLPELLEIMVRSLRAGHPLVVAFTLAAKQMPDPAGSEIGITADEIG 187

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  +  ++  + R +  +++ FF+T +++Q+Q GGNL+E LA L+ +LR+R  ++ +V+
Sbjct: 188 YGRDVGAALYNLYRRVGFEDLRFFATAVTIQAQTGGNLAEILARLATLLRERARLRQRVR 247

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E + SA  +   PF ++ L+   +P Y   +  +P   + L VA   ++IG +V+ 
Sbjct: 248 ALSAEGRLSALALSLFPFLLAGLITLLNPDYYGSVWGNPLFDLALTVAGGMLIIGNIVLY 307

Query: 181 LMINFDV 187
            ++NF +
Sbjct: 308 RIVNFRI 314


>gi|221067369|ref|ZP_03543474.1| type II secretion system protein [Comamonas testosteroni KF-1]
 gi|220712392|gb|EED67760.1| type II secretion system protein [Comamonas testosteroni KF-1]
          Length = 329

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/187 (33%), Positives = 114/187 (60%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++    +R        P ALD+I R++RAG   S  + +   + S+P+  EFR V +  +
Sbjct: 143 LQRKRNQRLGLLERQIPEALDLIARALRAGHAFSAGLQMAGEELSEPIAGEFRLVHDEIN 202

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL ++++ +   +P+ ++ +F   + +Q + GGNL+E L+NLSR++R+R  + AK++
Sbjct: 203 YGTSLQQALNNLGERIPITDLRYFIVAVLIQRESGGNLTEMLSNLSRLIRERLKLHAKIR 262

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + SAWI+G +PF ++ L+ F +P +M+ L  DP G ++L   A  M+IG++++R
Sbjct: 263 VLSSEGRMSAWILGLMPFALAALLNFVNPEFMSTLWTDPIGIVILQWLAGLMVIGMLMLR 322

Query: 181 LMINFDV 187
            ++   V
Sbjct: 323 RIVRIRV 329


>gi|261856882|ref|YP_003264165.1| type II secretion system F domain protein [Halothiobacillus
           neapolitanus c2]
 gi|261837351|gb|ACX97118.1| Type II secretion system F domain protein [Halothiobacillus
           neapolitanus c2]
          Length = 284

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 98/185 (52%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L ++R  K     P+ L ++  S+RAGL  + A+  +   +  P+  EF  V+  Q +G
Sbjct: 100 WLKQRRIDKIQQQLPDGLMMVSGSMRAGLGFTAALESLARDTDPPLAQEFALVLREQRMG 159

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + L +++      +P+Q+V+ F + +++  ++GGNL+E+L +L+  LR R  M+ KV++L
Sbjct: 160 VKLEDALLHFNDRVPVQDVTLFVSAVNISREVGGNLAESLTSLASTLRRRLIMEGKVKSL 219

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + + +    ++  +P  + T +    P  M+ L + P G  ++ VA     +G  +   +
Sbjct: 220 TAQGRLQGIVMALMPVGLLTFLTLAYPDTMHDLYHTPLGWGIIAVAVVMEYLGYRMSLKI 279

Query: 183 INFDV 187
           +  D+
Sbjct: 280 VTIDI 284


>gi|87312289|ref|ZP_01094387.1| secretion system protein TadB [Blastopirellula marina DSM 3645]
 gi|87284993|gb|EAQ76929.1| secretion system protein TadB [Blastopirellula marina DSM 3645]
          Length = 320

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/187 (34%), Positives = 108/187 (57%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    K R AKF    P+AL++I R++RAG  +     ++  +S DP+  EF +V E Q+
Sbjct: 134 VHFKRKARLAKFGKQLPDALELISRALRAGHSLGAGFRLVSEESDDPIGREFAKVFEAQN 193

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+SL ++I+ M   +P  ++ FF T I +Q Q GG+L+E L  + R++R R  +   +Q
Sbjct: 194 LGVSLEDAITDMTERVPNLDLKFFGTAIILQRQTGGDLAEILDKIGRLVRQRLELFGTIQ 253

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ E + S  ++  LP  +   ++  +PGY+  L  DP G+ +L VA    LIG  V++
Sbjct: 254 ALTGEGRISGIVLLGLPPALFVALWRLNPGYVMTLFTDPLGNKMLAVAIVMQLIGAWVIQ 313

Query: 181 LMINFDV 187
            +I+  V
Sbjct: 314 KIIDIKV 320


>gi|303248307|ref|ZP_07334569.1| Type II secretion system F domain protein [Desulfovibrio
           fructosovorans JJ]
 gi|302490332|gb|EFL50244.1| Type II secretion system F domain protein [Desulfovibrio
           fructosovorans JJ]
          Length = 326

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 113/187 (60%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR  +F    P ALD++ R++RAG   +  + ++V + ++P+ SEFR  +E  +
Sbjct: 140 IAMRKAKRMTEFERQLPEALDLVGRALRAGHTFTSGMGMVVSEFAEPISSEFRTTLEEIN 199

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ ++ ++  ++  +   +++FF   + +Q++ GGNL+E + N++ ++R+R  +K +++
Sbjct: 200 FGMGVTVALDNLMDRVDCPDLNFFVISVKIQNETGGNLAEIIGNIASLIRERLKLKGRIR 259

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + +AW++  LPF V   V   +PGY+ +L  +P G +L+ V    M +G++V+R
Sbjct: 260 VLSAEGRMAAWVLCLLPFFVCGAVQVLNPGYLGLLFTEPLGRILIYVVMGLMTLGVLVIR 319

Query: 181 LMINFDV 187
            M+  +V
Sbjct: 320 KMVRIEV 326


>gi|167842455|ref|ZP_02469139.1| Flp pilus assembly protein TadB [Burkholderia thailandensis MSMB43]
          Length = 325

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 60/185 (32%), Positives = 105/185 (56%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           H   +R  K     P+  D I R++RAG   S A++++ G+ ++P+  EFR   +  + G
Sbjct: 141 HCRTRRLRKLERQLPDTCDTIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + L E++  +   +P+ ++ +F   + +Q + GGNL+E L  ++ ++R+R  +  KV+ L
Sbjct: 201 VPLQEALLNLATRVPVPDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKVRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E K SA I+  LPF  + L+   +P ++ VL  DP G +L+G+  A M  GI+ MR +
Sbjct: 261 SAEGKLSALILTLLPFGTAGLLSVMNPDFIAVLWQDPAGILLVGMTIASMAFGILWMRHI 320

Query: 183 INFDV 187
           I   V
Sbjct: 321 IRIRV 325


>gi|222111306|ref|YP_002553570.1| type II secretion system protein [Acidovorax ebreus TPSY]
 gi|221730750|gb|ACM33570.1| type II secretion system protein [Acidovorax ebreus TPSY]
          Length = 279

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 104/185 (56%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +L ++R AK ++  P+AL+++  S+R+G  ++ A+ ++  ++  P   E   V+  Q LG
Sbjct: 95  YLKRRREAKLIEQMPDALNMLAGSLRSGASLAIAMDLVATETPPPFSQELSLVLREQKLG 154

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +SL ++     + + L++V+   + I++   +GGNLSE L  L+  LR +  M+ K++AL
Sbjct: 155 VSLEDAFESFAKRVNLEDVNLLVSAITISKDVGGNLSEVLERLASTLRAKAAMEGKIRAL 214

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + + K    ++G LP  +  +++   P  M  L +   G  ++ V A  +++G + ++ +
Sbjct: 215 TSQGKLQGIVVGLLPVFLGFVLFQMEPEAMAPLFSTYYGWAVMAVVAVLLIMGGVFIKKI 274

Query: 183 INFDV 187
           +  DV
Sbjct: 275 VTIDV 279


>gi|116671480|ref|YP_832413.1| type II secretion system protein [Arthrobacter sp. FB24]
 gi|116611589|gb|ABK04313.1| type II secretion system protein [Arthrobacter sp. FB24]
          Length = 310

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 96/186 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L  KR A+F     + L ++   +RAG  +  A+     +S  P   E RRVI    
Sbjct: 124 LGFLAGKRRARFDQQLGDTLQLLAGGLRAGHSILRAIDAAAAESQSPTSEEMRRVITETS 183

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  L  S++     M  ++  + +  I +  ++GGNL+E L  ++  +R+R  +K  ++
Sbjct: 184 LGRDLLASLTDTSERMKNEDFVWIAQAIQINREVGGNLAEVLDQVNETIRERSEIKGHIK 243

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ E K SA+I+ ++P  +  ++   +PGYM+ +   P G  ++  +  FM IG + MR
Sbjct: 244 ALAAEGKFSAYILIAMPIGIVLMLMAVNPGYMDAMFTHPLGWAMIAASVVFMTIGSLWMR 303

Query: 181 LMINFD 186
            +I+  
Sbjct: 304 KIIDLK 309


>gi|308050052|ref|YP_003913618.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
           9799]
 gi|307632242|gb|ADN76544.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
           9799]
          Length = 324

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 58/187 (31%), Positives = 96/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR  K  + FP ALDI+ R ++AG    DA+ +   +   P+  EF+ +    +
Sbjct: 138 LNRDFNKRMEKIEEQFPEALDILRRGIQAGYAFPDAIKLTYEEMDGPIAYEFKVMFAEIN 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G     ++   +  +P      FST + VQ + GGNL+E L NL+RI+R R   + +V+
Sbjct: 198 YGKDTRRALLHFIERVPSVSAMAFSTAVQVQKETGGNLAENLENLTRIIRKRFRFQRQVK 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             S + + SAW++  +P  +   +Y +SP Y   L +   G+ LL +A   MLIGI  + 
Sbjct: 258 TFSAQGRMSAWVLVCVPLALFGYLYLSSPTYARELTDTEIGNTLLTIAGIGMLIGIYWIS 317

Query: 181 LMINFDV 187
            +I  +V
Sbjct: 318 RLIRIEV 324


>gi|264678229|ref|YP_003278136.1| type II secretion system protein [Comamonas testosteroni CNB-2]
 gi|262208742|gb|ACY32840.1| type II secretion system protein [Comamonas testosteroni CNB-2]
          Length = 329

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 60/187 (32%), Positives = 112/187 (59%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++     R  +     P ALD+I R++RAG   S ++ +   + ++P+  EFR V +  +
Sbjct: 143 LQRKRLLRLKRMERQLPEALDLIARALRAGHAFSASLQMAGEELTEPIADEFRLVHDEIN 202

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL ++++ +   +P+ ++ +F   + +Q + GGNL+E L+NLSR++R+R  + AKV+
Sbjct: 203 YGTSLQQALTNLGERVPITDLRYFIVAVLIQRESGGNLTEMLSNLSRLIRERLKLHAKVR 262

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS + + SAW +G +PF ++ L+   +P +M+ L  DP G  +L   AA M+IG++++R
Sbjct: 263 VLSADGRMSAWFLGLMPFGLAALLNLMNPEFMHPLWTDPIGITILKWLAALMVIGLLLLR 322

Query: 181 LMINFDV 187
            +    V
Sbjct: 323 RIARIRV 329


>gi|254505024|ref|ZP_05117175.1| Bacterial type II secretion system protein F domain [Labrenzia
           alexandrii DFL-11]
 gi|222441095|gb|EEE47774.1| Bacterial type II secretion system protein F domain [Labrenzia
           alexandrii DFL-11]
          Length = 339

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 93/186 (50%), Positives = 134/186 (72%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +  K+R   FL++ PN +DIIVR V+AGLP+SD V V+  ++ +PV +EFR+V ETQ 
Sbjct: 153 IGNKRKRRFNAFLNELPNGIDIIVRGVKAGLPLSDCVKVVAREAREPVATEFRKVTETQV 212

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+SL+E++S+M   +PL E +F + V+S+Q + GG L+EAL NLSR+LR RK MKAK++
Sbjct: 213 MGVSLAEALSKMPDRVPLPETNFLAIVVSIQQKAGGGLAEALGNLSRVLRQRKAMKAKIK 272

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS EAK+SA IIG+LPF V  +++F +P YM +L     G +++     +M  GIMVMR
Sbjct: 273 ALSSEAKSSAAIIGALPFVVGGILFFIAPDYMMILFTATTGKIIVAGCLFWMFCGIMVMR 332

Query: 181 LMINFD 186
            MINFD
Sbjct: 333 SMINFD 338


>gi|16263304|ref|NP_436097.1| Pilus assembly protein [Sinorhizobium meliloti 1021]
 gi|307304377|ref|ZP_07584128.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           BL225C]
 gi|14523983|gb|AAK65509.1| Pilus assembly protein [Sinorhizobium meliloti 1021]
 gi|306902579|gb|EFN33173.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           BL225C]
          Length = 333

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 88/186 (47%), Positives = 130/186 (69%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +      R  +F  +FPNA+D+IVR ++AGLP+ D + VI  ++ +PV+ EF  +++ Q 
Sbjct: 147 VNMKRNARFTRFAAEFPNAVDVIVRGLKAGLPMPDCLRVIAMEAQEPVKGEFLAIVQDQT 206

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ + E++ RM   MPL E +FF+ V+++QS+ GG+LSEAL NLS++LR+RK MK K++
Sbjct: 207 LGIPVDEAVKRMSERMPLAEANFFAIVVAIQSRTGGSLSEALGNLSKVLRERKKMKGKIK 266

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S EAK+SA IIG+LPF V+  VYF SP YM +L     G +++     +M IGI+VMR
Sbjct: 267 AMSSEAKSSAGIIGALPFLVAGAVYFMSPDYMALLFTTMIGKVVVVGCGLWMGIGILVMR 326

Query: 181 LMINFD 186
            MINFD
Sbjct: 327 KMINFD 332


>gi|83716413|ref|YP_440463.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264]
 gi|167617238|ref|ZP_02385869.1| Flp pilus assembly protein TadB [Burkholderia thailandensis Bt4]
 gi|257141111|ref|ZP_05589373.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264]
 gi|83650238|gb|ABC34302.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264]
          Length = 325

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 104/185 (56%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +R  K     P+A D+I R++RAG   S A++++ G+ +DP+  EFR   +  + G
Sbjct: 141 RCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFADPMGGEFRITFDEINYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + L E++  +   +P+ ++ +F   + +Q + GGNL+E L  ++ ++R+R  +  K++ L
Sbjct: 201 VPLQEALLNLATRVPVPDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKIRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E K SA I+  LPF  + L+   +P +++VL  D  G +L+G     M  GI+ MR +
Sbjct: 261 SAEGKLSALILTLLPFGTAALLAIMNPDFISVLWEDSAGVLLVGATVTSMAFGILWMRHI 320

Query: 183 INFDV 187
           I   V
Sbjct: 321 IRIRV 325


>gi|167579123|ref|ZP_02371997.1| Flp pilus assembly protein TadB [Burkholderia thailandensis TXDOH]
          Length = 325

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 104/185 (56%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +R  K     P+A D+I R++RAG   S A++++ G+ +DP+  EFR   +  + G
Sbjct: 141 RCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFADPMGGEFRITFDEINYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + L E++  +   +P+ ++ +F   + +Q + GGNL+E L  ++ ++R+R  +  K++ L
Sbjct: 201 VPLQEALLNLATRVPVPDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKIRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E K SA I+  LPF  + L+   +P +++VL  D  G +L+G     M  GI+ MR +
Sbjct: 261 SAEGKLSALILTLLPFGTAALLAIMNPDFISVLWEDSAGVLLVGATVTSMAFGILWMRHI 320

Query: 183 INFDV 187
           I   V
Sbjct: 321 IRIRV 325


>gi|269960463|ref|ZP_06174835.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834540|gb|EEZ88627.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 322

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 98/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ +I  R  KF +  P ALDII R ++AG P++ A   +  + S P+  EF       +
Sbjct: 136 LQKMIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGNEMSAPLGPEFLNTFNMLN 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L  +I +M    P   +  FS+ + +Q + GGNL E +  LS+ILR R  +  K++
Sbjct: 196 YGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSQILRARFKLARKIK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +S E++ SAW++   PF +  ++    P Y+ +L   P G  ++      + IG + +R
Sbjct: 256 TISAESRMSAWVLVLAPFGLYVIISLIRPEYIELLHTTPMGVKMIIGGMVSLFIGTIWIR 315

Query: 181 LMINFDV 187
            ++N +V
Sbjct: 316 KIVNIEV 322


>gi|254229336|ref|ZP_04922753.1| bacterial type II secretion system protein F domain [Vibrio sp.
           Ex25]
 gi|262393423|ref|YP_003285277.1| flp pilus assembly protein TadB [Vibrio sp. Ex25]
 gi|151938144|gb|EDN56985.1| bacterial type II secretion system protein F domain [Vibrio sp.
           Ex25]
 gi|262337017|gb|ACY50812.1| flp pilus assembly protein TadB [Vibrio sp. Ex25]
          Length = 322

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 96/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  I  R  KF +  P ALDII R ++AG P++ A   +  + S P+  EF       +
Sbjct: 136 LQKRIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGREVSAPLGPEFMNTFNLLN 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L  +I +M    P   +  FS+ + +Q + GGNL E +  LS ILR R  +  K++
Sbjct: 196 YGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKLARKIK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +S E++ SAW++   PF +  ++    P Y+ +L   P G  ++      + IG + +R
Sbjct: 256 TISAESRMSAWVLVLAPFGLYVIISLVRPEYIELLHTHPMGIKMVIGGMVALFIGTLWIR 315

Query: 181 LMINFDV 187
            ++N +V
Sbjct: 316 KIVNIEV 322


>gi|307318084|ref|ZP_07597520.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           AK83]
 gi|306896125|gb|EFN26875.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           AK83]
          Length = 333

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 88/186 (47%), Positives = 130/186 (69%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +      R  +F  +FPNA+D+IVR ++AGLP+ D + VI  ++ +PV+ EF  +++ Q 
Sbjct: 147 VNMKRNARFTRFAAEFPNAVDVIVRGLKAGLPMPDCLRVIAMEAQEPVKGEFLAIVQDQT 206

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ + E++ RM   MPL E +FF+ V+++QS+ GG+LSEAL NLS++LR+RK MK K++
Sbjct: 207 LGIPVDEAVKRMSERMPLAEANFFAIVVAIQSRTGGSLSEALGNLSKVLRERKKMKGKIK 266

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S EAK+SA IIG+LPF V+  VYF SP YM +L     G +++     +M IGI+VMR
Sbjct: 267 AMSSEAKSSAGIIGALPFLVAGAVYFMSPDYMALLFTTMIGKVVVVGCGLWMGIGILVMR 326

Query: 181 LMINFD 186
            MINFD
Sbjct: 327 KMINFD 332


>gi|85373128|ref|YP_457190.1| hypothetical protein ELI_01505 [Erythrobacter litoralis HTCC2594]
 gi|84786211|gb|ABC62393.1| hypothetical protein ELI_01505 [Erythrobacter litoralis HTCC2594]
          Length = 323

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/187 (35%), Positives = 119/187 (63%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I KRTA F   FP+A++++VR +R+GLPV++ +AV+  +   PV  EF+ ++E   
Sbjct: 137 VGFFINKRTADFNSKFPDAIELLVRGLRSGLPVTETLAVVAQEVPGPVGVEFKSIVERIK 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G ++ E +      + + E +FF   +++Q + GGNL+E L+NLS +LR R  MK K++
Sbjct: 197 IGKTMEEGLQDTADKLNIPEFNFFCITLAIQRETGGNLAETLSNLSEVLRKRGQMKLKIR 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E+KASA+I+G+LPF V  ++++ +P Y++    D R  ++      +M IG  +M 
Sbjct: 257 AMSSESKASAYIVGALPFIVFAMIWWINPTYIDGFFTDERLIVIGLGGMVWMSIGAFIMA 316

Query: 181 LMINFDV 187
            M++F++
Sbjct: 317 KMVSFEI 323


>gi|259417689|ref|ZP_05741608.1| type II secretion system protein [Silicibacter sp. TrichCH4B]
 gi|259346595|gb|EEW58409.1| type II secretion system protein [Silicibacter sp. TrichCH4B]
          Length = 322

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 96/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR AK  +  P+ ++++VRS+R G P S AV ++  +  DP+ +EF  + +   
Sbjct: 136 VNSKAKKRMAKLEEQLPDGVELMVRSLRVGHPFSSAVQIVAKEVDDPLATEFGIIADECS 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   + +Q++ F +  +++Q Q GGNL+E LA L++++R R  +  +V+
Sbjct: 196 YGRDVGEALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EA+ S   +   P           P Y + +++ P       +    +   I VMR
Sbjct: 256 AITAEAQWSGKFLSGFPLFTLGGTLVMDPHYYDSVLDHPWFMPACFIVGGMLTANIFVMR 315

Query: 181 LMINFDV 187
            + +  V
Sbjct: 316 KLTDIQV 322


>gi|258627497|ref|ZP_05722278.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603]
 gi|262165915|ref|ZP_06033652.1| flp pilus assembly protein TadB [Vibrio mimicus VM223]
 gi|262171239|ref|ZP_06038917.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451]
 gi|258580303|gb|EEW05271.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603]
 gi|261892315|gb|EEY38301.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451]
 gi|262025631|gb|EEY44299.1| flp pilus assembly protein TadB [Vibrio mimicus VM223]
          Length = 321

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 102/187 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  I  R ++F +  P+ALDII R ++AG PV+ A   +  + + P+  EF+      +
Sbjct: 135 LQKRIADRLSRFEEQLPDALDIIRRMLQAGQPVTQAFNEVGKEMAAPIGLEFKNTFNLLN 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  +  +I +M    P   +  F++ + +Q + GGNLSE L  + ++LR R  +  K++
Sbjct: 195 YGYDMRLAIMQMAERTPTVSMLAFASAVMLQKETGGNLSENLEKVGKVLRQRFKLTRKIK 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E++ SAWI+   PF +   + F +P Y+  L  D RG  ++ V    +  G + +R
Sbjct: 255 TLSAESRLSAWILVLSPFVLFIGLMFINPDYVTPLYQDARGMEMVSVGMVSLFFGAIWIR 314

Query: 181 LMINFDV 187
            +I+F+V
Sbjct: 315 KIISFEV 321


>gi|218530658|ref|YP_002421474.1| type II secretion system protein [Methylobacterium chloromethanicum
           CM4]
 gi|218522961|gb|ACK83546.1| type II secretion system protein [Methylobacterium chloromethanicum
           CM4]
          Length = 323

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 92/187 (49%), Positives = 134/187 (71%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   K+R   F+++ PNA+D++VR +R+G+P+ D + +I  ++ +P+RSEFR  +E+Q 
Sbjct: 137 LKRRQKRRVEAFIEELPNAMDVVVRGLRSGIPLGDCLRMIAREAKEPLRSEFRVTMESQA 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGLS+S++I RM   +P+ EV+FFS VI +Q + GGNLSEAL NLSR+LR+RK M  K+Q
Sbjct: 197 LGLSMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQ 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIG+LPF V    Y +SP Y  +L     G + L ++  +ML G+ VM+
Sbjct: 257 AMSMEAKASAAIIGALPFVVGGGTYLSSPDYTALLWTTSFGKIALVISGLWMLTGVFVMK 316

Query: 181 LMINFDV 187
            MINFD+
Sbjct: 317 KMINFDI 323


>gi|163851907|ref|YP_001639950.1| type II secretion system protein [Methylobacterium extorquens PA1]
 gi|163663512|gb|ABY30879.1| type II secretion system protein [Methylobacterium extorquens PA1]
          Length = 323

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 92/187 (49%), Positives = 134/187 (71%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   K+R   F+++ PNA+D++VR +R+G+P+ D + +I  ++ +P+RSEFR  +E+Q 
Sbjct: 137 LKRRQKRRVEAFIEELPNAMDVVVRGLRSGIPLGDCLRMIAREAKEPLRSEFRVTMESQA 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGLS+S++I RM   +P+ EV+FFS VI +Q + GGNLSEAL NLSR+LR+RK M  K+Q
Sbjct: 197 LGLSMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQ 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIG+LPF V    Y +SP Y  +L     G + L ++  +ML G+ VM+
Sbjct: 257 AMSMEAKASAAIIGALPFVVGGGTYLSSPDYTALLWTTSFGKIALVISGLWMLTGVFVMK 316

Query: 181 LMINFDV 187
            MINFD+
Sbjct: 317 KMINFDI 323


>gi|153834070|ref|ZP_01986737.1| Flp pilus assembly protein TadB [Vibrio harveyi HY01]
 gi|148869625|gb|EDL68615.1| Flp pilus assembly protein TadB [Vibrio harveyi HY01]
          Length = 322

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 98/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ +I  R  KF +  P ALDII R ++AG P++ A   +  + S P+  EF       +
Sbjct: 136 LQKMIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGREVSAPLGPEFLNTFNLLN 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L  +I +M    P   +  FS+ + +Q + GGNL E +  LSRILR R  +  K++
Sbjct: 196 YGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSRILRARFKLARKIK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +S E++ SAW++   PF +  ++    P Y+ +L   P G  ++      + IG + +R
Sbjct: 256 TISAESRMSAWVLVLAPFGLYIIISLVRPDYIELLHTSPMGIKMVIGGMISLFIGTLWIR 315

Query: 181 LMINFDV 187
            ++N +V
Sbjct: 316 KIVNIEV 322


>gi|220923699|ref|YP_002499001.1| type II secretion system protein [Methylobacterium nodulans ORS
           2060]
 gi|219948306|gb|ACL58698.1| type II secretion system protein [Methylobacterium nodulans ORS
           2060]
          Length = 327

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 88/172 (51%), Positives = 126/172 (73%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           +FPNA+D+IVR V+AGLP+ D + ++  ++ +PV+SEFR ++E Q LG+ L +++ R+  
Sbjct: 155 EFPNAIDVIVRGVKAGLPLVDCLNIVAAEAQEPVKSEFRALVEDQTLGMPLQDAVERLPE 214

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            MPL E  FF+ VI++QS+ GG+LSEAL NLSR+LR+RK M+ K++A+S EAKASA II 
Sbjct: 215 RMPLSEARFFAIVIAIQSRTGGSLSEALGNLSRVLRERKKMQGKIKAVSSEAKASAGIIA 274

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           +LP  V +LVY TSP YM +L   P G  +L     +ML+G ++MR MINFD
Sbjct: 275 ALPIVVGSLVYLTSPAYMALLFTTPIGKAVLAGCVVWMLLGTLMMRKMINFD 326


>gi|84501672|ref|ZP_00999844.1| type II/IV secretion system protein, TadC subfamily protein
           [Oceanicola batsensis HTCC2597]
 gi|84390293|gb|EAQ02852.1| type II/IV secretion system protein, TadC subfamily protein
           [Oceanicola batsensis HTCC2597]
          Length = 322

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 102/187 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR +   +  P+A++++VRS+R G P S A+ ++  + +DP+ SEF  + +   
Sbjct: 136 VNSKAKKRMSLIEEQLPDAVELMVRSLRVGHPFSSAIQIVSREVADPLGSEFGIIADENA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  +   + LQ++ F +  +++Q Q GGNL+E LA L+ ++R R  +  +V+
Sbjct: 196 YGRDMGEALKDLAERIGLQDLRFLAVAVTIQQQSGGNLAEILAGLANVIRARFRLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EA+ S   + + P      +    P Y + +++ P         A F+ + ++VMR
Sbjct: 256 AITAEAQWSGMFLSAFPIVALIAINVMDPHYYDEVMDHPFFLPACFAVAGFLGVNLIVMR 315

Query: 181 LMINFDV 187
            +++  V
Sbjct: 316 KLVDIKV 322


>gi|269926133|ref|YP_003322756.1| type II secretion system protein [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789793|gb|ACZ41934.1| type II secretion system protein [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 336

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 108/187 (57%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    K+R +      P A+D++  ++ AG  ++ A+ +   + S+P+  E  +V+  Q 
Sbjct: 150 LALRRKRRLSALERQLPGAIDVLAGALEAGSSLAQAMMLAAREMSNPISDELIKVVRDQE 209

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGLS  E++ RM+   P +++    T I++Q ++GG+L+  L ++S  +R+R  +K +++
Sbjct: 210 LGLSQEEALRRMLERCPSEDLDMMITAINIQYRVGGSLAHVLKSISTTIRERLRIKGEIK 269

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L+ + + SA+I+ ++PF ++ +++  +  Y+  L     G ++L VA A +++G  +MR
Sbjct: 270 VLTAQGRISAYIVTAIPFLLTAVIFLLNRSYIMPLFTTNMGRIMLAVALAGIMMGYYMMR 329

Query: 181 LMINFDV 187
            +I   V
Sbjct: 330 RIIAIKV 336


>gi|254255260|ref|ZP_04948576.1| Flp pilus assembly protein TadB [Burkholderia dolosa AUO158]
 gi|124900997|gb|EAY71747.1| Flp pilus assembly protein TadB [Burkholderia dolosa AUO158]
          Length = 325

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 101/181 (55%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  K     P+  D+I R++R+G   +  + ++  +  DP+  EFR   +  + G+ L+
Sbjct: 145 RRMRKLQRQLPDVCDMIARALRSGHSFTSTLGMVGDEFPDPMGGEFRVTFDEVNYGVPLN 204

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  +   +P Q++ +F   + +Q + GGNL+E L +++ ++R+R  +  KV+ LS E 
Sbjct: 205 DALKNLATRVPAQDLRYFVIAVLIQRETGGNLAELLDSIAALIRERFKLFDKVRVLSAEG 264

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + SAWI+G LPF    ++   +  +++VL  DP G  ++G     M  G++ +R ++   
Sbjct: 265 RLSAWILGLLPFGTGAVMALVNREFLSVLWQDPAGIRMVGTMLVSMAFGLLWIRRIVRIR 324

Query: 187 V 187
           V
Sbjct: 325 V 325


>gi|254464012|ref|ZP_05077423.1| type II secretion system protein [Rhodobacterales bacterium Y4I]
 gi|206684920|gb|EDZ45402.1| type II secretion system protein [Rhodobacterales bacterium Y4I]
          Length = 322

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 96/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR A   +  P+A++++VRS+R G P + AV ++  +  DP+ +EF  + +   
Sbjct: 136 VNKKAAKRMAMIEEQLPDAVELMVRSLRVGHPFTSAVQIVANEVEDPLATEFGIISDECA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   + +Q++ F +  +++Q Q GGNL+E LA L++++R R  +  +V+
Sbjct: 196 YGRDIGEALKEMAERLDMQDMRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EA+ S   +   P      +    P Y + +++ P            +   + VMR
Sbjct: 256 AITAEAQWSGKFLSGFPLFCLAGILVKDPNYYDKVLDHPWFIPACFTVGVMLTANLFVMR 315

Query: 181 LMINFDV 187
           ++ N  V
Sbjct: 316 MLTNIKV 322


>gi|240139030|ref|YP_002963505.1| Pilus assembly protein, type II secretion protein [Methylobacterium
           extorquens AM1]
 gi|240009002|gb|ACS40228.1| Pilus assembly protein, type II secretion protein [Methylobacterium
           extorquens AM1]
          Length = 323

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 92/187 (49%), Positives = 134/187 (71%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   K+R   F+++ PNA+D++VR +R+G+P+ D + +I  ++ +P+RSEFR  +E+Q 
Sbjct: 137 LKRRQKRRVEAFIEELPNAMDVVVRGLRSGIPLGDCLRMIAREAKEPLRSEFRVTMESQA 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGLS+S++I RM   +P+ EV+FFS VI +Q + GGNLSEAL NLSR+LR+RK M  K+Q
Sbjct: 197 LGLSMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQ 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIG+LPF V    Y +SP Y  +L     G + L ++  +ML G+ VM+
Sbjct: 257 AMSMEAKASAAIIGALPFVVGGGTYLSSPDYTALLWTTSFGKIALVISGLWMLTGVFVMK 316

Query: 181 LMINFDV 187
            MINFD+
Sbjct: 317 KMINFDI 323


>gi|84387238|ref|ZP_00990259.1| Flp pilus assembly protein TadB [Vibrio splendidus 12B01]
 gi|84377885|gb|EAP94747.1| Flp pilus assembly protein TadB [Vibrio splendidus 12B01]
          Length = 321

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 58/187 (31%), Positives = 104/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++ +  R A+F +  P ALDII R+++AG P+  +   +  +  DP+  EF+      +
Sbjct: 135 VQNRVTYRMARFEEQLPEALDIIRRALQAGQPLVQSFNEVGEELPDPIGVEFKNTYNLLN 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L  +I +M   +P   +  FS+ + +Q + GGNLSE L  +S +LR R  ++ K++
Sbjct: 195 YGYDLRLAILQMTERVPTVSMLAFSSAVMLQKETGGNLSENLQKVSEVLRARFKLERKIK 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E++ SAWI+   PF +   +   SP Y+  L  DPRG  ++ V    + IG + ++
Sbjct: 255 TLSAESRLSAWILTLSPFGLFFALRVASPEYIEPLYKDPRGLSMVSVGIVLLAIGALWIK 314

Query: 181 LMINFDV 187
            +I+ ++
Sbjct: 315 KIISIEI 321


>gi|301165544|emb|CBW25115.1| putative pilus assembly-related protein [Bacteriovorax marinus SJ]
          Length = 296

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 90/187 (48%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L+ +R   +     +AL ++   +RAGL V  A+ ++V +   PV  EF  +++   
Sbjct: 110 INYLVDRRINAYSAQMVDALTLLSNGIRAGLSVPQAIGMVVDEMPAPVSQEFNMILQQNR 169

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E    + + +P ++   F + I++  + GGNL+E    +  ++R+R  +K K+ 
Sbjct: 170 IGVPLEECFDNLSKRIPTEDNDMFVSSINILRETGGNLAEVFDTIVDVIRERVRLKQKID 229

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             + +       I  +P+ +  + + + P  +  +   P G +L   A AF   G  V+ 
Sbjct: 230 TFTAQGMFQGLTIFLMPYGIGLIYFVSDPESVKPMFTHPLGIILTLAALAFDFAGGFVIL 289

Query: 181 LMINFDV 187
            ++   V
Sbjct: 290 KIVKIKV 296


>gi|170734861|ref|YP_001773975.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
 gi|169820899|gb|ACA95480.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
          Length = 325

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 104/185 (56%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               KR  K     P+  D+I R++R+G   +  + ++  +  +P+  EFR   +  + G
Sbjct: 141 RCRAKRMRKLERQLPDICDMIARALRSGHSFTSTLGMVGDEFPEPMGGEFRVTFDEVNYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +SL ++++ +   +P+Q++ +F   + +Q + GGNL+E L +++ ++R+R  +  KV+ L
Sbjct: 201 VSLHDALTNLATRVPVQDLRYFVIAVLIQRETGGNLAELLESIAGLIRERFKLFDKVRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAWI+G LPF  + ++   +  +++VL  DP G  ++G     ML G+  +R +
Sbjct: 261 SAEGRLSAWILGLLPFGTAAVMALLNREFLSVLWEDPAGIRMVGTMLVSMLFGLFWIRRI 320

Query: 183 INFDV 187
           +   V
Sbjct: 321 VRIRV 325


>gi|302037433|ref|YP_003797755.1| pilus assembly protein TadB [Candidatus Nitrospira defluvii]
 gi|300605497|emb|CBK41830.1| Pilus assembly protein TadB [Candidatus Nitrospira defluvii]
          Length = 313

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 62/186 (33%), Positives = 105/186 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +      R A F    P+ALD++ RS+RAG      + ++  +   P+ +EFR V+E   
Sbjct: 127 LSWRAAARRAHFQRQLPDALDMMARSLRAGHAFLAGMKIVAEEFPAPIGAEFRSVVEEVA 186

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+S++E++ R+   +    ++FF T + +Q + GGNL+E L  +SR+ R R  + AKV+
Sbjct: 187 FGVSVTEALQRLTARVDSPALNFFVTSVLIQRESGGNLAEILNTISRMTRKRFELAAKVR 246

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SA I+ +LPF +  L+   +P Y+ +L  DP G  ++ V    MLIG +V +
Sbjct: 247 AVSAEGRLSAVILFALPFALGGLLLIINPDYVLLLFRDPIGRAMVTVGGVLMLIGGVVTK 306

Query: 181 LMINFD 186
            M+   
Sbjct: 307 RMVTVR 312


>gi|13475421|ref|NP_106985.1| hypothetical protein mlr6484 [Mesorhizobium loti MAFF303099]
 gi|14026173|dbj|BAB52771.1| mlr6484 [Mesorhizobium loti MAFF303099]
          Length = 323

 Score =  118 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 62/186 (33%), Positives = 111/186 (59%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++    KR  KF    P+ALD+IVRS+RAG P + A+A++  +  DP+ +EF  V +   
Sbjct: 137 LRSARDKRIKKFAVQLPDALDMIVRSLRAGHPTTVAIALVAREMPDPLGTEFGIVSDEIS 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            GLSL +++ ++   +  + +   S  +S+Q++ GGNL+E L+NLS +LR+R+ ++ K++
Sbjct: 197 FGLSLEQAVRKLSERVGFEGLHLLSVSLSIQAKTGGNLTEILSNLSSVLRERRKLRMKIR 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E + SAWII   P  +  ++   +P +   +  +P    +  +  ++ L+G  +M 
Sbjct: 257 ALSAEGRMSAWIISLFPLLMLGVLSIAAPSFYGDVWGNPIVVPVFVIFGSWALLGDFIMY 316

Query: 181 LMINFD 186
            M+NFD
Sbjct: 317 RMVNFD 322


>gi|227818620|ref|YP_002822591.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234]
 gi|36958876|gb|AAQ87301.1| TadB-like protein involved in pilus formation and/or protein
           secretion [Sinorhizobium fredii NGR234]
 gi|227337619|gb|ACP21838.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234]
          Length = 332

 Score =  118 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 91/186 (48%), Positives = 132/186 (70%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     +R  +F  +FPNA+D+IVR ++AGLP++D + VI  ++ +PV+ EF  +   Q 
Sbjct: 146 VNTTRNRRLKRFTAEFPNAVDVIVRGLKAGLPMTDCLRVIAAEAQEPVKGEFLTIAHDQT 205

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGL + E++ R+   MPL E  FF+ VI++QS+ GG+LSEAL NLS++LR+RK MKAK++
Sbjct: 206 LGLPVDEAVERLCERMPLPEARFFAIVITIQSRTGGSLSEALGNLSKVLRERKKMKAKIK 265

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S EAK+SA IIG+LPF V+  VY TSP YM++L     G M+L  +A +M IG ++MR
Sbjct: 266 AMSAEAKSSAGIIGALPFFVAGAVYLTSPDYMSLLFTTMTGKMVLVGSALWMGIGTLLMR 325

Query: 181 LMINFD 186
            MINFD
Sbjct: 326 KMINFD 331


>gi|328474277|gb|EGF45082.1| putative tight adherence TadB-like transmembrane protein [Vibrio
           parahaemolyticus 10329]
          Length = 322

 Score =  118 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 96/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  I  R  KF +  P ALDII R ++AG P++ A   +  + S P+  EF       +
Sbjct: 136 LQKKIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGREVSAPLGPEFLNTFNLLN 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L  +I +M    P   +  FS+ + +Q + GGNL E +  LS ILR R  +  K++
Sbjct: 196 YGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKLARKIK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +S E++ SAW++   PF +  ++    P Y+ +L   P G  ++      + IG + +R
Sbjct: 256 TISAESRMSAWVLVLAPFALYVIISLVRPEYIELLHTHPMGIKMVIGGMVALFIGTLWIR 315

Query: 181 LMINFDV 187
            ++N +V
Sbjct: 316 KIVNIEV 322


>gi|28899185|ref|NP_798790.1| putative tight adherence TadB-like transmembrane protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153836794|ref|ZP_01989461.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810]
 gi|260361576|ref|ZP_05774603.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030]
 gi|260876733|ref|ZP_05889088.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034]
 gi|260898189|ref|ZP_05906685.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466]
 gi|260900404|ref|ZP_05908799.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037]
 gi|28807409|dbj|BAC60674.1| putative tight adherence TadB-related transmembrane protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149749940|gb|EDM60685.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810]
 gi|308089098|gb|EFO38793.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466]
 gi|308091412|gb|EFO41107.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034]
 gi|308109112|gb|EFO46652.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037]
 gi|308114015|gb|EFO51555.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030]
          Length = 322

 Score =  118 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 96/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  I  R  KF +  P ALDII R ++AG P++ A   +  + S P+  EF       +
Sbjct: 136 LQKKIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGREVSAPLGPEFLNTFNLLN 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L  +I +M    P   +  FS+ + +Q + GGNL E +  LS ILR R  +  K++
Sbjct: 196 YGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKLARKIK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +S E++ SAW++   PF +  ++    P Y+ +L   P G  ++      + IG + +R
Sbjct: 256 TISAESRMSAWVLVLAPFALYVIISLVRPEYIELLHTHPMGIKMVIGGMVALFIGTLWIR 315

Query: 181 LMINFDV 187
            ++N +V
Sbjct: 316 KIVNIEV 322


>gi|254561625|ref|YP_003068720.1| Pilus assembly protein, type II secretion protein [Methylobacterium
           extorquens DM4]
 gi|254268903|emb|CAX24864.1| Pilus assembly protein, type II secretion protein [Methylobacterium
           extorquens DM4]
          Length = 323

 Score =  118 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 91/187 (48%), Positives = 134/187 (71%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   ++R   F+++ PNA+D++VR +R+G+P+ D + +I  ++ +P+RSEFR  +E+Q 
Sbjct: 137 LKRRQRRRVEAFIEELPNAMDVVVRGLRSGIPLGDCLRMIAREAKEPLRSEFRVTMESQA 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGLS+S++I RM   +P+ EV+FFS VI +Q + GGNLSEAL NLSR+LR+RK M  K+Q
Sbjct: 197 LGLSMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQ 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIG+LPF V    Y +SP Y  +L     G + L ++  +ML G+ VM+
Sbjct: 257 AMSMEAKASAAIIGALPFVVGGGTYLSSPDYTALLWTTSFGKIALVISGLWMLTGVFVMK 316

Query: 181 LMINFDV 187
            MINFD+
Sbjct: 317 KMINFDI 323


>gi|116687152|ref|YP_840399.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
 gi|116652867|gb|ABK13506.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
          Length = 325

 Score =  118 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 105/185 (56%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               KR  K     P+  D+I R++R+G   +  + ++  + S+P+  EFR   +  + G
Sbjct: 141 RCRAKRMRKLERQLPDICDMIARALRSGHSFTSTLGMVGDEFSEPMGGEFRVTFDEVNYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +SL ++++ +   +P+Q++ +F   + +Q + GGNL+E L +++ ++R+R  +  KV+ L
Sbjct: 201 VSLHDALTNLATRVPVQDLRYFVIAVLIQRETGGNLAELLESIAGLIRERFKLFDKVRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAWI+G LPF  + ++   +  +++VL  DP G  ++G     ML G+  +R +
Sbjct: 261 SAEGRLSAWILGLLPFGTAAVMALLNREFLSVLWEDPAGIRMVGTMLVSMLFGLFWIRRI 320

Query: 183 INFDV 187
           +   V
Sbjct: 321 VRIRV 325


>gi|330811032|ref|YP_004355494.1| type II secretion system protein; membrane protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379140|gb|AEA70490.1| putative type II secretion system protein; putative membrane
           protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 328

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 65/183 (35%), Positives = 102/183 (55%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
             KR A F +  P+ALD + R++RAG P ++ + ++  +   PV  EF       + G  
Sbjct: 146 RNKRFAAFEEGLPDALDAMCRALRAGHPFNETLRLVAEEHKGPVAQEFGMTFSDINYGND 205

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  ++  MP   V    T I +  + GGNL+E L  LSR++R R   + K++ LS 
Sbjct: 206 VRRAMLGLLERMPSMTVMMLVTSILIHRETGGNLTEVLERLSRLIRGRFRFQRKIRTLSA 265

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           E + SAW++ ++PF ++  +  TSP YM VLINDP GH L+  A   MLIGI  ++ +I 
Sbjct: 266 EGRMSAWVLVAIPFVLAIAIVLTSPSYMPVLINDPIGHKLIIGAFCAMLIGIFWIKKIIR 325

Query: 185 FDV 187
             V
Sbjct: 326 IQV 328


>gi|134299963|ref|YP_001113459.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
 gi|134052663|gb|ABO50634.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
          Length = 323

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 108/187 (57%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   +KR AKF     +AL I+  S+R+G     A+ ++  +  +P+  EF R  +  +
Sbjct: 137 IRIKRQKRLAKFNSQISDALVIMSNSLRSGFSFLQAMDMVRKELPNPISKEFGRTFQEMN 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG    E++  M + +   ++    T + +Q Q+GGNL+E + N++  +R+R  +K +++
Sbjct: 197 LGTQAEEALENMAQRVKSDDLDLLITAVLIQRQVGGNLAEVMDNIADTIRERVRVKGQIR 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L+ + + S ++IG LPF ++T++   SP Y+  L N   G +++G+A    +IG+M ++
Sbjct: 257 TLTAQGRISGFVIGLLPFGLTTVMITISPSYILTLFNSQLGLLMMGMAIISEVIGVMFIK 316

Query: 181 LMINFDV 187
            ++N +V
Sbjct: 317 KIVNIEV 323


>gi|296158516|ref|ZP_06841346.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
 gi|295891084|gb|EFG70872.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
          Length = 282

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 100/187 (53%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K + KKR        P+AL ++  ++RAG     A+  +V +++ P+  EF  ++    
Sbjct: 96  LKRMRKKRIEALEKQLPDALLMMSGALRAGASFPSALEAVVHETTPPISQEFDLLMREIR 155

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L  ++  + + +P+ ++   +  +++  ++GGNL+EAL +++R LR++  M+ K++
Sbjct: 156 LGIDLDIAMRNVEKRIPIPDLLMMTAAVTIAREVGGNLAEALESVARTLREKLQMEGKIR 215

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ + +    ++  LP  +  ++ F  P  M  L N+P G   L V      +G + + 
Sbjct: 216 ALTSQGRMQGIVMTCLPLFLMLVLRFMEPKAMAPLFNEPVGWATLAVIGVMEFLGYVWIT 275

Query: 181 LMINFDV 187
            + N DV
Sbjct: 276 KITNIDV 282


>gi|197106462|ref|YP_002131839.1| Flp pilus assembly protein TadB [Phenylobacterium zucineum HLK1]
 gi|196479882|gb|ACG79410.1| Flp pilus assembly protein TadB [Phenylobacterium zucineum HLK1]
          Length = 305

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 74/184 (40%), Positives = 113/184 (61%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L+ +R  +FL  F  A+ +IVR +RAGLPV++ V V+  +   PV  EFRRV +   LG 
Sbjct: 122 LMGRRRGRFLKTFAEAIALIVRGLRAGLPVTETVGVVGREIEGPVGEEFRRVADEVRLGA 181

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +  ++    R + L E  F +  ++VQ + GGNL+E+L NL  ILR R+ M+ K++A+S
Sbjct: 182 PIEGAMGEAARRIGLPEFDFLAICLAVQRETGGNLAESLENLEHILRRRQQMRLKIKAMS 241

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            EA ASA IIG LPF ++ L+   SP YM VL   P G +++    A + +G ++MR M+
Sbjct: 242 SEATASALIIGVLPFAMAVLMSIASPDYMRVLFTGPLGRLMIAAGLASLAVGGLIMRKMV 301

Query: 184 NFDV 187
            F++
Sbjct: 302 RFEI 305


>gi|32473986|ref|NP_866980.1| secretion system protein TadB [Rhodopirellula baltica SH 1]
 gi|32444523|emb|CAD74522.1| secretion system protein TadB [Rhodopirellula baltica SH 1]
          Length = 347

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 102/185 (55%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
              K+R  +F +  P AL+++ RS+RAG  ++    ++  +   P+ +EFRR  E Q  G
Sbjct: 163 FKRKRRLKRFGEQIPEALELLGRSLRAGHSLNAGFGLVGDEMEAPLATEFRRCFEEQKFG 222

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + L ESI  M   +P  ++ FF+T + +Q Q GG+LSE L  +  ++R+R  +   +QAL
Sbjct: 223 IPLDESIEDMAERVPNMDLRFFATAVILQRQTGGDLSEILDKIGHLVRERLQILGTIQAL 282

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E + S  ++ +LP  +  ++   +  Y+ +L  D  G M LG+A    ++G + ++ +
Sbjct: 283 TGEGRMSGAVLLALPPVLFLVMLKINAEYVLMLFTDELGRMALGMALVTQVLGALAIKKI 342

Query: 183 INFDV 187
           I   V
Sbjct: 343 ITIKV 347


>gi|329935279|ref|ZP_08285245.1| type II secretion system F protein [Streptomyces griseoaurantiacus
           M045]
 gi|329305102|gb|EGG48961.1| type II secretion system F protein [Streptomyces griseoaurantiacus
           M045]
          Length = 315

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 94/187 (50%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR   F++  P+   ++  +  AGL +  A+A+   +   P   E  RV +  +
Sbjct: 129 LNWQRQKRIEAFINQLPDVARLLANATAAGLALRTALAMAAEELEAPAGEELARVADQLN 188

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG ++ +++  +   +P +E+    T + + ++ GG++  +L NL++ L DRK  + +V+
Sbjct: 189 LGRTVDDALGELAERLPSRELIVLVTTLVLSNKAGGSVVSSLRNLTQTLEDRKETRREVR 248

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +  E  A+A+ +  L      LV  ++ G +  +   P G  L+ ++ A   +G +V+R
Sbjct: 249 TMLSEVNATAFTVPMLGLGSLVLVNSSNEGALERVTGSPLGQALVLISLALYTVGFLVIR 308

Query: 181 LMINFDV 187
            +   +V
Sbjct: 309 RLGRIEV 315


>gi|84687273|ref|ZP_01015153.1| Putative Flp pilus assembly protein TadB [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84664706|gb|EAQ11190.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium
           HTCC2654]
          Length = 322

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 94/187 (50%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR A F +  P+A++++VRS+R G P S A+ ++  +  DP+ SE   + +   
Sbjct: 136 INGKAKKRMAMFEEQLPDAVELMVRSLRVGHPFSSAIQIVAKEVPDPLGSEIGIIADESA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + +S+  M   M +Q++ F +  +++Q   GGNL+E L  L++++R R  +  +V+
Sbjct: 196 YGRDIGDSLKAMAERMDMQDLRFLAVAVTIQQTSGGNLAEILDGLAKVIRSRFKLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EAK S   +   P     ++    P Y + +           V   F++    VM+
Sbjct: 256 AITAEAKWSGTFLSGFPILAIVMINVIQPNYYDDVKETGFFIPAALVCLGFLIANYFVMK 315

Query: 181 LMINFDV 187
            + N  V
Sbjct: 316 ALTNIKV 322


>gi|296134294|ref|YP_003641541.1| Type II secretion system F domain protein [Thermincola sp. JR]
 gi|296032872|gb|ADG83640.1| Type II secretion system F domain protein [Thermincola potens JR]
          Length = 320

 Score =  117 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 103/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   +KR A+F     +AL I+  S+RAG     A+ ++  +   P+  EF R +   +
Sbjct: 134 VKAAKQKRVARFNAQIGDALIIMANSLRAGFSFLQAMELVSKEMPAPISVEFARALREMN 193

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +  E++  +   +  +++    T + +Q Q+GGNLS+ L  +S  +R+R  +K +++
Sbjct: 194 LGTATEEALQNLCNRVESEDLDLVITAVLIQRQVGGNLSQILEGISHTIRERVRIKGEIK 253

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L+ + + S  I+G+LP  +  ++   +PGY+ +L +D  G +L+       LIG+ +++
Sbjct: 254 TLTAQGRISGMIVGALPVGMGLILAVINPGYIGILFSDSLGLVLIVAGVILQLIGVALIK 313

Query: 181 LMINFDV 187
            +++  V
Sbjct: 314 KIVDIKV 320


>gi|197295160|ref|YP_002153701.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
 gi|195944639|emb|CAR57243.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
          Length = 325

 Score =  117 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 104/185 (56%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +R  K     P+  D+I R++R+G   +  + ++  + S+P+  EFR   +  + G
Sbjct: 141 RCRARRMRKLERQLPDICDMIARALRSGHSFTSTLGMVGDEFSEPMGGEFRVTFDEVNYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +SL +++  +   +P+Q++ +F   + +Q + GGNL+E L +++ ++R+R  +  KV+ L
Sbjct: 201 VSLHDALMNLATRVPVQDLRYFVIAVLIQRETGGNLAELLDSIAGLIRERFKLFDKVRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAWI+G LPF  + ++   +  +++VL  DP G  ++G     ML G+  +R +
Sbjct: 261 SAEGRLSAWILGLLPFGTAAVMALLNREFLSVLWEDPAGIRMVGTMLVSMLFGLFWIRRI 320

Query: 183 INFDV 187
           +   V
Sbjct: 321 VRIRV 325


>gi|224824219|ref|ZP_03697327.1| type II secretion system protein [Lutiella nitroferrum 2002]
 gi|224603638|gb|EEG09813.1| type II secretion system protein [Lutiella nitroferrum 2002]
          Length = 324

 Score =  117 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 62/185 (33%), Positives = 106/185 (57%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               KR AKF +  P+A+D++ R++RAG  +  ++ +I  + SDP+  EFR   +  + G
Sbjct: 140 RFRHKRLAKFEEQLPDAIDLMCRALRAGHALPQSLKMIGDEMSDPISGEFRTTFDEVNYG 199

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            SL E++  +   +P  ++ +    + +Q + GGNL+E L N+S ++R R  +   ++ L
Sbjct: 200 FSLQEAMMNLATRIPSTDLRYMVIAVLIQRETGGNLAELLGNISALIRARLKLYGTIRVL 259

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E K SAWI+  LPF V+ +++  +PG+M VL  D  G M++ +    ML GI  MR +
Sbjct: 260 AAEGKLSAWILTILPFAVALVIHLLNPGFMKVLWEDQTGLMMVSIIGLMMLAGIFWMRQI 319

Query: 183 INFDV 187
           I   V
Sbjct: 320 IKIQV 324


>gi|299067811|emb|CBJ39022.1| Tad secretion system, pilus assembly protein [Ralstonia
           solanacearum CMR15]
          Length = 325

 Score =  117 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 95/185 (51%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               KR  +  +  P A D++ R++RAG  +  A+ +   +   P+ +E   V    + G
Sbjct: 141 RCRAKRLLRLEEQLPEAADLLSRALRAGHSLPSALDMAGSELPAPIGAELALVFSEINYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + + ++++ +   +P++++ +    + +Q + GGNL+E L N+  ++R R  +  KV+ L
Sbjct: 201 VPMGDALTGLTDRVPIEDLHYLVIAVLIQRESGGNLAEILDNVGSLIRKRLQLLDKVRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E +   WI+  LP  V  +VY  +P  ++ L  DP G  +L  A     +G++ +R +
Sbjct: 261 SAEGRMGGWILTLLPPVVGVIVYELNPDLISTLWKDPTGLKMLWYAITMTCVGVIWIRQI 320

Query: 183 INFDV 187
           +   +
Sbjct: 321 VRIHI 325


>gi|153006802|ref|YP_001381127.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5]
 gi|152030375|gb|ABS28143.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5]
          Length = 320

 Score =  117 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 64/185 (34%), Positives = 105/185 (56%), Gaps = 1/185 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
              +R+ K  +  P AL+++ RS+RAG  ++ A  V+ G+  +PV  EF R  + Q LGL
Sbjct: 136 ARSRRSQKISEQLPEALEMMARSLRAGHALTSAFQVVAGEMPEPVCVEFARSYDEQRLGL 195

Query: 64  SLSESISRMVRYMP-LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           SL +++  M    P   +V  F+    +Q + GGNL+E L  +S  +R R     K++AL
Sbjct: 196 SLEQAVLHMAERCPGNSDVKIFAVSAVIQRETGGNLAEILEKISDTIRQRYRFYGKLRAL 255

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E +ASAW++G LPF V+  V   +PGY+  L  +P GH ++G A     +GI+ +R +
Sbjct: 256 TGEGRASAWVLGLLPFIVALAVSVMNPGYLRTLAENPSGHWIVGYAIVSWAVGIVWLRRL 315

Query: 183 INFDV 187
              ++
Sbjct: 316 TQLEI 320


>gi|110636325|ref|YP_676533.1| type II secretion system protein [Mesorhizobium sp. BNC1]
 gi|110287309|gb|ABG65368.1| type II secretion system protein [Chelativorans sp. BNC1]
          Length = 337

 Score =  117 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 107/187 (57%), Positives = 147/187 (78%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L ++R   FL++FPNALDIIVR+V++GLP++DAV +I  ++ +PVR+EFRR++E Q 
Sbjct: 151 IAYLRRRRVQAFLNEFPNALDIIVRAVKSGLPLNDAVRMIAVEAQEPVRTEFRRLVEAQQ 210

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGL ++E+  RM   MP  EV+FF  V+ +QSQ GGNLSEAL NLSR+LR+RK +KA+VQ
Sbjct: 211 LGLPMAEAAMRMSETMPCPEVNFFGIVLQIQSQAGGNLSEALGNLSRVLRERKKIKARVQ 270

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASA IIG+LP  V+ LVY TSP Y+  L ++  GH++LG++A +M IGI VMR
Sbjct: 271 ALSMEAKASAVIIGALPIVVAALVYITSPAYIMPLFSESVGHLILGLSAVWMSIGIFVMR 330

Query: 181 LMINFDV 187
            M+NF+V
Sbjct: 331 QMMNFEV 337


>gi|54302282|ref|YP_132275.1| Flp pilus assembly protein TadB [Photobacterium profundum SS9]
 gi|46915704|emb|CAG22475.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
           profundum SS9]
          Length = 288

 Score =  117 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 106/187 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+  +KR   F + F  ALD++ R++  G P ++ +  +  +   P+  EF +     +
Sbjct: 102 LKYKAEKRLCLFEEQFVEALDVMKRALLVGYPFTEVMKTVSQEMPAPISVEFGKTFSELN 161

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  +++ + +  P   V  F++ + +Q + GGNL+E L NLS ++R R  +  KV+
Sbjct: 162 YGVDIKVALANLAQRNPSISVLAFNSAVIIQKETGGNLAETLENLSEVIRGRFRLLRKVR 221

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           +LS E + SAWI+  +PF +  ++Y ++P Y++ L    RG  LL +    M++G++ +R
Sbjct: 222 SLSAEGRMSAWILMCVPFVLVIMIYLSTPDYLDPLFESDRGANLLMITGVCMILGMIWIR 281

Query: 181 LMINFDV 187
            ++  +V
Sbjct: 282 KILRIEV 288


>gi|220922783|ref|YP_002498085.1| type II secretion system protein [Methylobacterium nodulans ORS
           2060]
 gi|219947390|gb|ACL57782.1| type II secretion system protein [Methylobacterium nodulans ORS
           2060]
          Length = 322

 Score =  117 bits (292), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 88/187 (47%), Positives = 137/187 (73%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L K+R A+F+ + PNA+D+IVR +++GLP+ D + +I  ++ DPV++EFR ++E+Q 
Sbjct: 136 LAYLRKRRMARFVLELPNAMDVIVRGIKSGLPIGDCLRIIAREAPDPVKTEFRAIVESQA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GL L E+ +++   MP+ E +FF+ VI +QS+ GGNLSEAL NLSR+LRDR+ M  KV 
Sbjct: 196 IGLPLPEAAAKLYERMPIPEANFFAIVIGIQSKSGGNLSEALGNLSRVLRDRRRMADKVS 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEA+ASA II SLPF V+ L Y +SP Y+++L     G + +  +  +MLIG++VM+
Sbjct: 256 AMSMEARASAAIIASLPFAVAILCYLSSPDYISLLWTTQVGQIAIAASGLWMLIGVLVMK 315

Query: 181 LMINFDV 187
            MI F++
Sbjct: 316 RMITFEI 322


>gi|186474107|ref|YP_001861449.1| type II secretion system protein [Burkholderia phymatum STM815]
 gi|184196439|gb|ACC74403.1| type II secretion system protein [Burkholderia phymatum STM815]
          Length = 326

 Score =  117 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 60/187 (32%), Positives = 106/187 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++    KR  +     P+A D+I R++RAG     A+ ++  +   P+  EFR   +  +
Sbjct: 140 LRSRRAKRVVQLERLLPDAADLIARALRAGHSFPAALGMVADELPQPLGGEFRIAFDEIN 199

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+S+++++  +V  +P+ +V +F   + +Q + GGNL+E L N++ I+R+R  + AKV+
Sbjct: 200 CGVSMNDALMNLVSRVPVDDVRYFVIAVLIQREAGGNLAEILGNIATIIRERLKLLAKVR 259

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + SAWI+G LPF V   +   +PGY  V   D  G  + GVA + M +G++ +R
Sbjct: 260 VLSAEGRLSAWILGLLPFIVIAALSVLNPGYCKVFWEDETGQKIAGVALSMMALGVLWLR 319

Query: 181 LMINFDV 187
             +   V
Sbjct: 320 KTVRIRV 326


>gi|296444391|ref|ZP_06886356.1| Type II secretion system F domain protein [Methylosinus
           trichosporium OB3b]
 gi|296258038|gb|EFH05100.1| Type II secretion system F domain protein [Methylosinus
           trichosporium OB3b]
          Length = 322

 Score =  117 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 93/187 (49%), Positives = 138/187 (73%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L ++R AKF++ FP ++DII+R ++AGLPV D   +I  ++ +PVRSEFR+++E+Q 
Sbjct: 136 LGFLARRRVAKFIEAFPGSVDIIIRGIKAGLPVGDCFRMIASEADEPVRSEFRQIVESQT 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GLS+ E+  R    MP+ E SFFS VIS+Q + GGNLSEAL+NL+ +LR+RK MKAKV+
Sbjct: 196 IGLSIGEATERFAERMPVAEASFFSIVISLQEKSGGNLSEALSNLAGVLRERKKMKAKVR 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S EAKASA IIGSLPF V   V+FT+  YM VL +   G+M++  +  +M +G+ +M+
Sbjct: 256 AMSAEAKASAGIIGSLPFLVGLAVWFTNKPYMAVLFDTTVGNMIIAGSLLWMAVGVFIMK 315

Query: 181 LMINFDV 187
            MI+F++
Sbjct: 316 NMIDFEI 322


>gi|269966899|ref|ZP_06180972.1| putative tight adherence TadB-related transmembrane protein [Vibrio
           alginolyticus 40B]
 gi|269828566|gb|EEZ82827.1| putative tight adherence TadB-related transmembrane protein [Vibrio
           alginolyticus 40B]
          Length = 322

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 95/187 (50%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  I  R  KF +  P ALDII R ++AG P++     +  + S P+  EF       +
Sbjct: 136 IQKRIADRLMKFEEQLPEALDIIKRVLQAGQPITQGFGEVGREVSAPLGPEFMNTFNLLN 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L  +I +M    P   +  FS+ + +Q + GGNL E +  LS ILR R  +  K++
Sbjct: 196 YGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKLARKIK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +S E++ SAW++   PF +  ++    P Y+ +L   P G  ++      + IG + +R
Sbjct: 256 TISAESRMSAWVLVLAPFGLYVIISLVRPEYIELLHTHPMGIKMVIGGMVALFIGTLWIR 315

Query: 181 LMINFDV 187
            ++N +V
Sbjct: 316 KIVNIEV 322


>gi|107028241|ref|YP_625336.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
 gi|105897405|gb|ABF80363.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
          Length = 325

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 104/185 (56%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               KR  K     P+  D+I R++R+G   +  + ++  + S+P+  EFR   +  + G
Sbjct: 141 RCRAKRMRKLERQLPDICDMIARALRSGHSFTSTLGMVGDEFSEPMGGEFRVTFDEVNYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +SL ++++ +   +P+Q++ +F   + +Q + GGNL+E L +++ ++R+R  +  KV+ L
Sbjct: 201 VSLHDALTNLATRVPVQDLRYFVIAVLIQRETGGNLAELLESIAGLIRERFKLFDKVRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAWI+G LPF  + ++   +  ++ VL  DP G  ++G     ML G+  +R +
Sbjct: 261 SAEGRLSAWILGLLPFGTAAVMALLNREFLLVLWEDPAGIRMVGTMLVSMLFGLFWIRRI 320

Query: 183 INFDV 187
           +   V
Sbjct: 321 VRIRV 325


>gi|78060307|ref|YP_366882.1| Flp pilus assembly protein TadB [Burkholderia sp. 383]
 gi|77964857|gb|ABB06238.1| Flp pilus assembly protein TadB [Burkholderia sp. 383]
          Length = 325

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/181 (29%), Positives = 102/181 (56%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR  K     P+  D+I R++R+G   +  + ++  +  DP+  EFR   +  + G+SL 
Sbjct: 145 KRMRKLERQLPDICDMISRALRSGHSFTSTLGMVGDEFPDPMGGEFRVTFDEVNYGVSLH 204

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  +   +P+Q++ +F   + +Q + GGNL+E L  +S ++R+R  +  KV+ LS E 
Sbjct: 205 DALMNLATRVPVQDLRYFVIAVLIQRETGGNLAELLDCISALIRERFKLFDKVRVLSAEG 264

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + SAWI+G LPF  + ++   +  +++VL  DP G  ++G     ML G+  +R ++   
Sbjct: 265 RLSAWILGLLPFGTAAVMALLNREFLSVLWEDPAGIRMVGGMLVSMLFGLFWIRRIVRIR 324

Query: 187 V 187
           V
Sbjct: 325 V 325


>gi|167584965|ref|ZP_02377353.1| type II secretion system protein [Burkholderia ubonensis Bu]
          Length = 325

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 102/183 (55%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
             +R  K     P+  D+I R++R+G   + A+ ++  + SDP+  EFR   +  + G+S
Sbjct: 143 RARRMRKLERQLPDVCDMIARALRSGHAFTSAIGMVSDEFSDPMGGEFRITFDEINYGVS 202

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L +++  +   +P++++ +F   + +Q + GGNL+E L +++ ++R+R  +  K++ LS 
Sbjct: 203 LHDALMNLANRVPVRDLRYFVIAVLIQRETGGNLAELLDSIAALIRERFKLFDKIRVLSA 262

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           E + SAW++G LPF  +  +   +P ++ VL  D  G  ++      M  G++ MR +I 
Sbjct: 263 EGRMSAWVLGLLPFATAGAMMVLNPEFLAVLWQDSAGIKMVATTLVSMAFGVLWMRRIIR 322

Query: 185 FDV 187
             V
Sbjct: 323 IHV 325


>gi|91777215|ref|YP_552423.1| putative type II secretion system protein F [Burkholderia
           xenovorans LB400]
 gi|91689875|gb|ABE33073.1| Putative type II secretion system protein F [Burkholderia
           xenovorans LB400]
          Length = 282

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 98/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K + KKR        P+AL ++  ++RAG     A+  +V +++ P+  EF  ++    
Sbjct: 96  LKRMRKKRIEALEKQLPDALLMMSGALRAGASFPAALEAVVYETAPPISQEFDLLMREIR 155

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L  ++  + + +P+ ++   +  +++  ++GGNL+EAL +++R LR++  M+ K++
Sbjct: 156 LGIDLDIAMRNVEKRIPIPDLLMMTAAVTIAREVGGNLAEALESVARTLREKLQMEGKIR 215

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ + +    ++  LP  +  ++ F     M  L ++P G   L V      +G   + 
Sbjct: 216 ALTSQGRMQGIVMTCLPLFLMLVLRFMEAKAMAPLFSEPVGWATLAVIGVMECLGYFWIS 275

Query: 181 LMINFDV 187
            + N DV
Sbjct: 276 RITNIDV 282


>gi|144897190|emb|CAM74054.1| pilus assembly protein TadB [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 279

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 87/186 (46%), Positives = 122/186 (65%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+R A+F   F +ALDI+VR +R+GLP+ + +A+I  +  +P+  EFR V+E Q 
Sbjct: 93  VGWLGKRRIARFTTLFADALDIVVRGLRSGLPLGECMAIIGREVPEPLGPEFRLVMEGQK 152

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGLSL ES++R V   P  +  +F+ V+ +Q Q GGNL+E LA LS +LR RK M+ K++
Sbjct: 153 LGLSLEESLARAVERTPTADFKYFAIVLGIQQQTGGNLAETLAKLSEVLRARKRMRDKIK 212

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A S EA ASA IIGSLP  V+ L+    P Y+ +L + P GH+LL      M +G +VMR
Sbjct: 213 AFSSEATASAMIIGSLPVVVALLLTAVGPDYIGILFSTPTGHLLLASGGLLMGMGALVMR 272

Query: 181 LMINFD 186
            MINFD
Sbjct: 273 KMINFD 278


>gi|296156493|ref|ZP_06839331.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
 gi|295893092|gb|EFG72872.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
          Length = 325

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 105/177 (59%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           +     P+A D+I R++RAG      + ++  +  DP+  EF  V +  + G+S+++++ 
Sbjct: 149 QLERQLPDAADLIARALRAGHSFPATLGMVGQELPDPLGGEFALVFDEINYGVSMNDALL 208

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            MV  +P++++ +F   + +Q + GGNL+E L ++S I+R+R  +  KV+ LS E + SA
Sbjct: 209 NMVSRVPVEDLRYFVIAVLIQREAGGNLAEILGSISGIIRERLKLLGKVRVLSAEGRLSA 268

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           W++  LPF +  L+   +PGY++V   DP G  L GVA   ML GI+ MR ++   +
Sbjct: 269 WVLAVLPFAILGLLTVLNPGYISVFWKDPAGVQLAGVAITMMLFGILWMRKIVRIHI 325


>gi|85707699|ref|ZP_01038765.1| hypothetical protein NAP1_00650 [Erythrobacter sp. NAP1]
 gi|85689233|gb|EAQ29236.1| hypothetical protein NAP1_00650 [Erythrobacter sp. NAP1]
          Length = 323

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 67/187 (35%), Positives = 117/187 (62%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   IKKRT  F   F + ++++VR +R+GLPV++ +AV+  +   PV  EF+ ++E   
Sbjct: 137 VSFFIKKRTNDFNAKFADGIELLVRGLRSGLPVTETLAVVAQEVPGPVGLEFKGIVERIK 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G ++ +S+      + + E +FF+  +++Q + GGNL+E L+NL+ +LR R  MK K++
Sbjct: 197 IGKTMEDSLQETADRLGIPEFNFFTITLAIQRETGGNLAETLSNLADVLRKRTQMKLKIK 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E+KASA+I+GSLPF V  L+Y  +P Y+     + R  +       +M IGI +M 
Sbjct: 257 AMSSESKASAYIVGSLPFIVFGLIYSVNPSYIGGFFVEERLMVTGLGGLVWMSIGIFIMA 316

Query: 181 LMINFDV 187
            M++F++
Sbjct: 317 KMVSFEI 323


>gi|90411199|ref|ZP_01219212.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
           profundum 3TCK]
 gi|90328045|gb|EAS44366.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
           profundum 3TCK]
          Length = 324

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 107/187 (57%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+  +KR   F + F  ALD++ R++  G P ++ +  +  +   PV  EF +     +
Sbjct: 138 LKYKAEKRLCLFEEQFVEALDVMKRALLVGYPFTEVMKTVSQEMPAPVSVEFGKTFSELN 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  +++ + +  P   V  F++ + +Q + GGNL+E L NLS ++R R  +  KV+
Sbjct: 198 YGVDIKVALANLAQRNPSVSVLAFNSAVIIQKETGGNLAETLENLSEVIRGRFRLLRKVR 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           +LS E + SAWI+  +PF +  ++Y ++P Y++ L    RG  LL + A  ML+G++ +R
Sbjct: 258 SLSAEGRMSAWILMCVPFVLVIMIYLSTPDYLDPLFESDRGANLLMITAVCMLVGMIWIR 317

Query: 181 LMINFDV 187
            ++  +V
Sbjct: 318 KILRIEV 324


>gi|114764950|ref|ZP_01444123.1| type II/IV secretion system protein, TadC subfamily [Pelagibaca
           bermudensis HTCC2601]
 gi|114542662|gb|EAU45686.1| type II/IV secretion system protein, TadC subfamily [Roseovarius
           sp. HTCC2601]
          Length = 321

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 106/187 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR A   +  P+A++++VRS+R G P S A+AV+  +  DP+ +EF  + +   
Sbjct: 135 VNGKAKKRLALIEEQLPDAVELMVRSLRVGHPFSSAIAVVSKEIKDPLATEFGVIADEST 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + ES+  M   + +Q++ F +  +S+Q Q GGNL+E L  L++++R R  +  +V+
Sbjct: 195 YGRDIGESLKHMAERLDMQDLRFLAVAVSIQQQSGGNLAEILEGLAKVIRARFRLFRRVK 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EA+ S   +   P  V  ++  T P Y + +++ P       + A F+ + +MVMR
Sbjct: 255 AITAEAQWSGKFLSGFPVGVLLVIQLTDPHYYDEVLDHPWFVPACFIVAVFLALNLMVMR 314

Query: 181 LMINFDV 187
           +++N  V
Sbjct: 315 MLVNIKV 321


>gi|283779213|ref|YP_003369968.1| type II secretion system protein [Pirellula staleyi DSM 6068]
 gi|283437666|gb|ADB16108.1| type II secretion system protein [Pirellula staleyi DSM 6068]
          Length = 321

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 102/185 (55%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +R A F    P AL++I R++RAG  ++    ++  +   P+  EF R  E Q+LG
Sbjct: 137 MKRNRRLAHFARQLPEALELISRALRAGHSLASGFKLVADELGGPIAVEFERCYEAQNLG 196

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + L E+I  M   +P  ++ FF+T + +Q Q GG+L+E L  +  ++R+R  +  ++QAL
Sbjct: 197 VPLEEAIDEMTVRVPNLDLRFFATAVILQRQTGGDLAEILDKIGHLVRERYKIWGQIQAL 256

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E + S  ++ +LP  +  +++  +  Y   L  DP GH +L  A    LIG +V+R +
Sbjct: 257 TGEGRLSGIVLLALPPVLFVVMWRLNQQYCMALFTDPMGHQMLAGAVVMQLIGALVIRKI 316

Query: 183 INFDV 187
           +N  V
Sbjct: 317 VNIKV 321


>gi|146276357|ref|YP_001166516.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145554598|gb|ABP69211.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 322

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 100/187 (53%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +  KKR A   +  P+A++++VRS+R G P S A+ ++  +  DP+ +EF  + +   
Sbjct: 136 VNNKAKKRMALIEEQLPDAVELMVRSLRVGHPFSSAIQIVAKEVPDPLGTEFGVIADEAA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  ++E I      M  Q++ F +  +++Q Q GGNL+E L  L++++R R  +  +V+
Sbjct: 196 YGRDVAECIRAFAERMDSQDLRFLAVAVNIQQQSGGNLAEILEGLAKVIRSRFKLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EAK S   + + P     ++    P Y + +   P       V  AF++  ++ M+
Sbjct: 256 AITAEAKWSGTFLSAFPIVALVMISVLKPDYYDGVKETPLFIPAALVVGAFLVANVIFMK 315

Query: 181 LMINFDV 187
           +M+N  V
Sbjct: 316 IMVNIKV 322


>gi|326388861|ref|ZP_08210443.1| type II secretion system protein [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326206461|gb|EGD57296.1| type II secretion system protein [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 323

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/187 (36%), Positives = 114/187 (60%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I KR   F+  FP+AL+++VR +R+GLP+S+ + V+  +   PV  EF+ V +   
Sbjct: 137 VSWAINKRINNFITRFPDALELLVRGLRSGLPISETLVVVANELPGPVSEEFKIVTDRIR 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG ++ +++      + L E SFF   +++Q + GGNL+E LANL+ +LR R  MK K++
Sbjct: 197 LGRTMEDALQETADRLDLAEFSFFCITLAIQRETGGNLAETLANLADVLRKRAQMKLKIK 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E+KASA+I+GSLPF V  L+Y  +P Y+     D R  +       ++ +G  +M 
Sbjct: 257 AMSSESKASAYIVGSLPFIVFALIYSINPRYLGQFFVDERLMVAGIGGLIWLSMGAFIMS 316

Query: 181 LMINFDV 187
            M+NF++
Sbjct: 317 RMVNFEI 323


>gi|300856046|ref|YP_003781030.1| putative type II secretion system protein [Clostridium ljungdahlii
           DSM 13528]
 gi|300436161|gb|ADK15928.1| putative type II secretion system protein [Clostridium ljungdahlii
           DSM 13528]
          Length = 320

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 104/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   K R   F  +    + II  S++AG     A+AV+  ++SDP   EF+++++   
Sbjct: 134 IRKRKKDRIKHFDSELNEGITIISNSLKAGYSFLQAIAVVSEETSDPFSKEFKKLLKEMS 193

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+S  +++  ++  +  +++     VI +Q  +GGNLSE L N+S  +R+R+ +K++++
Sbjct: 194 LGISEEDALKNLLSRVESEDLRLIVNVILIQKDIGGNLSEVLDNISETIRERQKIKSELK 253

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L+ + + S  I+  +P  +   +Y  +  Y+ +L     G +++  A     +G++++R
Sbjct: 254 TLTAQGRLSGIILMLIPIFLGVTIYLFNKEYILLLFTTSIGLIMVAAAVLSEFLGLLIIR 313

Query: 181 LMINFDV 187
            +IN D+
Sbjct: 314 KIINIDM 320


>gi|294140781|ref|YP_003556759.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12]
 gi|293327250|dbj|BAJ01981.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12]
          Length = 325

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 97/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR      DFP+ LD+I R+++AG   +DA+ +   +   P+  EF+ +    +
Sbjct: 139 LNRDTNKRMDTIEADFPDGLDVIRRALQAGYSFTDAIKLATEELEGPLAKEFKLMFVNIN 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
               +  ++   ++ +P      F++ + VQ + GGNL+E + NL+R++R R   + +V+
Sbjct: 199 YTKDIKRALLGFIQRVPSVSALAFASAVMVQRETGGNLAENIENLTRVIRQRFKFRRRVK 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + SAWI+  LPF +  ++Y  +P Y+  L     GH LL   A  M IG   + 
Sbjct: 259 TLSAEGRLSAWILILLPFVLFAVIYLQTPSYVGELTGTEAGHKLLMWGAVGMTIGGWWIS 318

Query: 181 LMINFDV 187
            +I  DV
Sbjct: 319 RIIKIDV 325


>gi|332188385|ref|ZP_08390110.1| bacterial type II secretion system F domain protein [Sphingomonas
           sp. S17]
 gi|332011614|gb|EGI53694.1| bacterial type II secretion system F domain protein [Sphingomonas
           sp. S17]
          Length = 327

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 68/187 (36%), Positives = 117/187 (62%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I +RT KF+  FP+A++++VR +R+GLP+++ ++V+  +   PV  EFR V +   
Sbjct: 141 VSMTINRRTTKFIARFPDAIELLVRGLRSGLPITETMSVVGQEIPGPVGDEFRAVSDRMK 200

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G ++  ++      +   E  FF   I++Q + GGNL+E L+NL+ +LR R  MK K++
Sbjct: 201 IGRTMDAALQETADRLETPEFQFFVIAIAIQRETGGNLAETLSNLAEVLRKRAQMKLKIK 260

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E+KASA+IIG+LPF V  +++  +  YM     DPR  ++ G    +M +G+ +M 
Sbjct: 261 AMSSESKASAYIIGALPFVVFAMIWMINAPYMARFFVDPRLMIIGGGGLLWMALGVFIMS 320

Query: 181 LMINFDV 187
            MINF++
Sbjct: 321 RMINFEI 327


>gi|157375502|ref|YP_001474102.1| Flp pilus assembly protein TadB [Shewanella sediminis HAW-EB3]
 gi|157317876|gb|ABV36974.1| conserved hypothetical Flp pilus assembly protein TadB [Shewanella
           sediminis HAW-EB3]
          Length = 325

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 96/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR       FP+ALD++ R+++AG   SDA+ +   +   P+  EF+ +    +
Sbjct: 139 LSRDTNKRMDAIEASFPDALDVVRRALQAGYSFSDAIKLATEELEGPIAKEFKLMFANIN 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
               +  ++   +  +P      F++ + VQ + GGNL+E + +LSR++R+R   + +V+
Sbjct: 199 YTKDVKRALLGFIERVPSISAMAFASAVMVQKETGGNLAENIESLSRVIRERFTFRRRVK 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + SAWI+  LPF +  ++Y  +P Y+  L     G  LL   A  M IG   + 
Sbjct: 259 TLSAEGRLSAWILILLPFVLFAVIYLQTPSYVGELTGTEGGKKLLMWGAIGMTIGGWWIS 318

Query: 181 LMINFDV 187
            +I  D+
Sbjct: 319 KIIRIDM 325


>gi|163738366|ref|ZP_02145781.1| type II secretion system protein [Phaeobacter gallaeciensis BS107]
 gi|163742217|ref|ZP_02149605.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter
           gallaeciensis 2.10]
 gi|161384547|gb|EDQ08928.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter
           gallaeciensis 2.10]
 gi|161388287|gb|EDQ12641.1| type II secretion system protein [Phaeobacter gallaeciensis BS107]
          Length = 322

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 100/187 (53%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR A   +  P+A++++VRS+R G P S AV ++  +  DP+ +EF  + +   
Sbjct: 136 VNKKAAKRMAMIEEQLPDAVELMVRSLRVGHPFSSAVQIVANEVEDPLATEFGVIADESA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   + +Q++ F +  +++Q Q GGNL+E LA L++++R R  +  +V+
Sbjct: 196 YGRDVGEALKEMAERLDMQDMRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EA+ S   +   P      +    PGY + +I+ P       V  A + + + VMR
Sbjct: 256 AITAEAQWSGKFLSGFPLFCLGGILAKDPGYYDSVIDHPWFIPACFVVGAMLTVNLFVMR 315

Query: 181 LMINFDV 187
           ++ N  V
Sbjct: 316 MLTNIKV 322


>gi|89899610|ref|YP_522081.1| type II secretion system protein [Rhodoferax ferrireducens T118]
 gi|89344347|gb|ABD68550.1| type II secretion system protein [Rhodoferax ferrireducens T118]
          Length = 322

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/173 (35%), Positives = 106/173 (61%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
            FP ALD++ R++RAG     AV ++  + +DP+  +FR + +  + G+  +++++ +  
Sbjct: 150 QFPEALDLMSRAMRAGHSFPSAVKMVADEMTDPLGHDFRVLFDEMNYGVPTNDALANLAE 209

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            +P+ +VS+F   + +Q + GGNL+E L  +S I+R+R  +  +V+ LS E K SA I+ 
Sbjct: 210 RVPVPDVSYFVVAVMIQRESGGNLAELLDKISLIVRERLKLLGEVRTLSAEGKLSAIILT 269

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           +LPF V  +V   +P +M VL  DP G  ++G+A   ML+GI+ MR +I   V
Sbjct: 270 ALPFGVGLVVNLVNPKFMAVLWTDPAGLRMVGLALFMMLLGILWMRSIIRIRV 322


>gi|159043674|ref|YP_001532468.1| type II secretion system protein [Dinoroseobacter shibae DFL 12]
 gi|157911434|gb|ABV92867.1| type II secretion system protein [Dinoroseobacter shibae DFL 12]
          Length = 322

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 103/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    K+R A   +  P+A++++VRS+R G P S A+ ++  + +DP+ +EF  + +   
Sbjct: 136 VNKKAKQRLAMIEEQLPDAVELMVRSLRVGHPFSSAINIVAKEVADPLGTEFGMIADEAA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  ++E++  +   M +Q++ F +  +S+QSQ GGNL+E L  L++++R R  +  +V+
Sbjct: 196 YGRDVTEALKELAERMDMQDLRFLAVAVSIQSQSGGNLAEILDGLAKVIRARFKLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EAK S   +   PF     +    P Y   + + P       V A F+ I I+ M+
Sbjct: 256 AITAEAKWSGMFLSGFPFLALVGINLMEPDYYADVKDTPAFIPACVVVAVFLTINIIFMK 315

Query: 181 LMINFDV 187
           +M+N  V
Sbjct: 316 MMVNIKV 322


>gi|302343415|ref|YP_003807944.1| Type II secretion system F domain protein [Desulfarculus baarsii
           DSM 2075]
 gi|301640028|gb|ADK85350.1| Type II secretion system F domain protein [Desulfarculus baarsii
           DSM 2075]
          Length = 322

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 59/187 (31%), Positives = 116/187 (62%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  +  KR + F   FP A++++ R++RAG   S  + ++  +  +PV SEF +  E   
Sbjct: 136 VSKIKAKRLSVFESQFPEAVELVGRALRAGHSFSAGLRMVGEELGEPVASEFNKTFEDYS 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G ++ E+++ +VR + L++V FF++ +S+Q + GGNL+E L N++ I+R+R  ++  V+
Sbjct: 196 FGKTMEEALTGLVRRVELEDVKFFASAVSLQRETGGNLTEILDNIAYIIRERFRLQRTVR 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E + S WI+  +P  +  ++Y+++P Y+N+ + +P G  +L   A   ++GI+V++
Sbjct: 256 ALSAEGRLSGWILSLMPPALFAMLYWSTPEYINMALGNPIGQTILLSGACLEVLGIVVIK 315

Query: 181 LMINFDV 187
            +I   V
Sbjct: 316 QIIKMRV 322


>gi|150377236|ref|YP_001313831.1| type II secretion system protein [Sinorhizobium medicae WSM419]
 gi|150031783|gb|ABR63898.1| type II secretion system protein [Sinorhizobium medicae WSM419]
          Length = 332

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 93/186 (50%), Positives = 131/186 (70%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +      R AKF  +FPNA+D+IVR ++AGLP+ D + VI  ++ +PV+ EF  +++ Q 
Sbjct: 146 VNIKRNARFAKFTAEFPNAVDVIVRGLKAGLPMPDCLRVIATEAQEPVKGEFLAIVQDQT 205

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ + E++ RM   MPL E  FF+ VI++QS+ GG+LSEAL NLS++LR+RK MKAK++
Sbjct: 206 LGIPVDEAVKRMSERMPLAEAHFFAIVIAIQSRTGGSLSEALGNLSKVLRERKKMKAKIK 265

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S EAK+SA IIG+LPF V+  VYF SP YM +L     G ++L     +M IGI+VMR
Sbjct: 266 AMSSEAKSSAGIIGALPFLVAGAVYFASPDYMALLFATVTGKIVLVGCGLWMGIGILVMR 325

Query: 181 LMINFD 186
            MINFD
Sbjct: 326 KMINFD 331


>gi|327543263|gb|EGF29696.1| Flp pilus assembly protein TadB [Rhodopirellula baltica WH47]
          Length = 321

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 102/185 (55%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
              K+R  +F +  P AL+++ RS+RAG  ++    ++  +   P+ +EFRR  E Q  G
Sbjct: 137 FKRKRRLKRFGEQIPEALELLGRSLRAGHSLNAGFGLVGDEMEAPLATEFRRCFEEQKFG 196

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + L ESI  M   +P  ++ FF+T + +Q Q GG+LSE L  +  ++R+R  +   +QAL
Sbjct: 197 IPLDESIEDMAERVPNMDLRFFATAVILQRQTGGDLSEILDKIGHLVRERLQILGTIQAL 256

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E + S  ++ +LP  +  ++   +  Y+ +L  D  G M LG+A    ++G + ++ +
Sbjct: 257 TGEGRMSGAVLLALPPVLFLVMLKINAEYVLMLFTDELGRMALGMALVTQVLGALAIKKI 316

Query: 183 INFDV 187
           I   V
Sbjct: 317 ITIKV 321


>gi|328545275|ref|YP_004305384.1| Bacterial type II secretion system protein F domain [polymorphum
           gilvum SL003B-26A1]
 gi|326415017|gb|ADZ72080.1| Bacterial type II secretion system protein F domain [Polymorphum
           gilvum SL003B-26A1]
          Length = 339

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 88/186 (47%), Positives = 132/186 (70%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR   FL++ PNA+DIIVR V+AGLP+ D + ++  ++ DPV  EFR+++E Q 
Sbjct: 153 LARRRRKRFDAFLNELPNAVDIIVRGVKAGLPLGDCIKIVASEARDPVAGEFRKIVEAQV 212

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GL+L+E++ R+   +PL E +FF+ V+++Q Q GG LSEAL NL ++LR RK +K K++
Sbjct: 213 MGLTLTEAVGRLPDRVPLAEANFFAIVVAIQQQAGGGLSEALGNLGKVLRGRKTLKGKIR 272

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS EAK+SA IIGSLPF VS ++Y  +P Y+ +L  +  G+M++     +M IG MVM+
Sbjct: 273 ALSSEAKSSAAIIGSLPFIVSLILYLIAPDYIMLLFTETAGNMIIAGGLLWMFIGSMVMK 332

Query: 181 LMINFD 186
            MINFD
Sbjct: 333 NMINFD 338


>gi|254476377|ref|ZP_05089763.1| type II secretion system protein [Ruegeria sp. R11]
 gi|214030620|gb|EEB71455.1| type II secretion system protein [Ruegeria sp. R11]
          Length = 322

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 100/187 (53%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR +   +  P+A++++VRS+R G P + AV ++  +  DP+ +EF  + +   
Sbjct: 136 VNKKAAKRMSMIEEQLPDAVELMVRSLRVGHPFASAVQIVANEVEDPLATEFGIIADESA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   + +Q++ F +  +++Q Q GGNL+E LA L++++R R  +  +V+
Sbjct: 196 YGRDVGEALKEMAERLDMQDMRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EA+ S   +   P      +    PGY + +I+ P       V  A + + + VMR
Sbjct: 256 AITAEAQWSGKFLSGFPLFCLGGILAKDPGYYDSVIDHPWFIPACFVVGAMLTVNLFVMR 315

Query: 181 LMINFDV 187
           ++ N  V
Sbjct: 316 MLTNIKV 322


>gi|17545370|ref|NP_518772.1| tight adherence TadB-related transmembrane protein [Ralstonia
           solanacearum GMI1000]
 gi|17427662|emb|CAD14181.1| probable pilus assembly tadb transmembrane protein [Ralstonia
           solanacearum GMI1000]
          Length = 325

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 96/185 (51%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               KR  +  +  P A D++ R++RAG  +  A+ +   +   P+ +E   V    + G
Sbjct: 141 RCRAKRLLRLEEQLPEAADLLSRALRAGHSLPSALDMAGSELPAPIGAELALVFSEINYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + ++++++ +   +P++++ +    + +Q + GGNL+E L N+  ++R R  +  KV+ L
Sbjct: 201 VPMNDALAGLTDRVPIEDLHYLVIAVLIQRESGGNLAEILDNVGSLIRKRLQLLDKVRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E +   WI+  LP  V  +VY  +P  ++ L  DP G  +L  A     +G++ +R +
Sbjct: 261 SAEGRMGGWILTLLPPVVGVIVYELNPDLISTLWKDPTGLKMLWYAITMTCVGVIWIRQI 320

Query: 183 INFDV 187
           +   +
Sbjct: 321 VRIHI 325


>gi|77919351|ref|YP_357166.1| Flp pilus assembly protein TadB [Pelobacter carbinolicus DSM 2380]
 gi|77545434|gb|ABA88996.1| Flp pilus assembly protein TadB [Pelobacter carbinolicus DSM 2380]
          Length = 325

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 104/177 (58%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
           A+F D  P ALD++ R++R+G  ++  + ++  +   P+ SEF   ++  +LGL+  E+ 
Sbjct: 148 ARFQDQLPEALDLLARALRSGHAMTSGLEMVAAEMDPPISSEFGAAVDEINLGLTFQEAF 207

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
             +   +P  ++ FF+  + +Q + GGN++E L ++SR++R+R   K +V+AL+ E + S
Sbjct: 208 ENLCERVPSTDLRFFAISVIIQRETGGNVAEILDSISRLIRERIQFKRQVKALTAEGRLS 267

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           A ++  LP  +   ++F +  Y+++L  +P G  +L  A    ++G  +++ ++  +
Sbjct: 268 AMVLIGLPIALFGYIFFVNHQYLSLLWTEPLGQYMLAGAIVLQILGAFIIKKIVTIE 324


>gi|116748936|ref|YP_845623.1| type II secretion system protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698000|gb|ABK17188.1| type II secretion system protein [Syntrophobacter fumaroxidans
           MPOB]
          Length = 321

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 111/187 (59%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    K+R  KF    P ALD++ R+++AG   S  + ++  +  DP+  EF + ++  +
Sbjct: 135 LMSRRKQRMEKFQRQLPEALDLVSRALKAGHAFSGGMKMVADEMDDPIGPEFDKTLDEIN 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+S+++++  +   +   ++S+F   + +Q + GGNL++ +A+++ ++R+R  +  +++
Sbjct: 195 FGVSVADALKNLAARVACPDLSYFVVAVLIQRESGGNLADLIASITHLIRERFKLYGRIR 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E +ASA I+ ++P  V+  +   S  Y+  L +D  G +L+G+A   M+ G++VMR
Sbjct: 255 VLSAEGRASAIILIAIPIFVAAALLVVSRSYITTLADDRIGRVLIGIAVCMMIFGVVVMR 314

Query: 181 LMINFDV 187
            MI  DV
Sbjct: 315 KMIRIDV 321


>gi|87199098|ref|YP_496355.1| type II secretion system protein [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87134779|gb|ABD25521.1| type II secretion system protein [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 324

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 67/187 (35%), Positives = 114/187 (60%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I KR   F+   P+ALD++VR +R+GLPV++ + V+  +   PV  EF+ V +   
Sbjct: 138 VGRAINKRIDNFVTRLPDALDLLVRGLRSGLPVTETLGVVAAELPGPVGEEFKLVTDRIK 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G ++ E++      + L E +FF   +++Q + GGNL+E L+NLS +LR R  MK K++
Sbjct: 198 VGRTMEEALQDTADRLNLPEFNFFCITLAIQRETGGNLAETLSNLSDVLRKRAQMKLKIK 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E+KASA+I+G+LPF V  L+Y+ +P Y+     D R  +       ++ IG  +M 
Sbjct: 258 AMSSESKASAYIVGALPFIVFALIYWINPVYLGKFFVDERLIIAGLGGLTWLGIGAFIMA 317

Query: 181 LMINFDV 187
            M++F++
Sbjct: 318 KMVSFEI 324


>gi|148557758|ref|YP_001265340.1| type II secretion system protein [Sphingomonas wittichii RW1]
 gi|148502948|gb|ABQ71202.1| type II secretion system protein [Sphingomonas wittichii RW1]
          Length = 324

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 72/187 (38%), Positives = 112/187 (59%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+R A+F+  FP+A++++VR +RAGLP+++ +  +  +   PV SEF+ V +   
Sbjct: 138 LNILAKRRIAQFITRFPDAIELLVRGLRAGLPIAETMGAVASEIEGPVGSEFQAVSDRMR 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G +L  ++      +   E  FF   +++Q + GGNL+E L NL+ +LR R  MK K+ 
Sbjct: 198 IGRTLEGALQETADRLGTAEFQFFVITLAIQRETGGNLAETLGNLADVLRKRMQMKLKIS 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E+KASA+IIG LPF V  L+ F SP YM     D R  +       +M IG  +MR
Sbjct: 258 AMSSESKASAYIIGVLPFVVFGLISFISPTYMAGFFADQRLMIAGAGGLIWMSIGAYIMR 317

Query: 181 LMINFDV 187
            MINF++
Sbjct: 318 QMINFEI 324


>gi|103486614|ref|YP_616175.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
 gi|98976691|gb|ABF52842.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
          Length = 310

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 71/187 (37%), Positives = 112/187 (59%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   IKKR A+F   FP+A+D++VR +R+GLPV++   V+  +   PV  EF+ V+E   
Sbjct: 124 VGMAIKKRVAQFNARFPDAIDLLVRGLRSGLPVTETFQVVSQELPGPVGEEFKGVVERIR 183

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G ++  ++      +   E  FF   I +Q + GGNL+E LANLS +LR R  MK K++
Sbjct: 184 IGNTMEAALQETAEMLGTPEFQFFCITIQIQRETGGNLAETLANLSDVLRKRAQMKLKIR 243

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S EAKASA+I+G+LPF V  +V+  +P Y+     + R  +       +M IG  +M 
Sbjct: 244 AMSSEAKASAYIVGALPFFVFGVVWTVNPSYLAGFFVEQRLIVAGIGGLIWMSIGAGIMA 303

Query: 181 LMINFDV 187
            M+NF++
Sbjct: 304 KMVNFEI 310


>gi|296284555|ref|ZP_06862553.1| hypothetical protein CbatJ_13051 [Citromicrobium bathyomarinum
           JL354]
          Length = 323

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 69/187 (36%), Positives = 121/187 (64%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   +K+RTA+F   FP+A+D++VR +R+GLPV++ +AV+  +   PV  EF+ +IE   
Sbjct: 137 VGFFMKRRTAQFNARFPDAIDLLVRGLRSGLPVTETLAVVAQEIPGPVGIEFKGIIERIK 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S+ E++      + + E +FF   +++Q + GGNL+E L+NLS +LR R  MK K++
Sbjct: 197 IGRSMEEAMQESADRLGIAEFNFFVIALAIQRETGGNLAETLSNLSDVLRKRAQMKLKIK 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E+KASA+I+GSLPF V  ++++ +P Y+     D R  +       +M +G+ +M 
Sbjct: 257 AMSSESKASAYIVGSLPFLVFAMIWWVNPSYLGAFFIDERLMIAGIGGLVWMSLGVFIMS 316

Query: 181 LMINFDV 187
            M++F++
Sbjct: 317 KMVSFEI 323


>gi|170692560|ref|ZP_02883722.1| type II secretion system protein [Burkholderia graminis C4D1M]
 gi|170142216|gb|EDT10382.1| type II secretion system protein [Burkholderia graminis C4D1M]
          Length = 327

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 103/185 (55%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
              +KR        P A D+I R++RAG   S A+ ++  + ++P+  EFR V +  + G
Sbjct: 143 RARRKRLRVLERQLPEAADMISRALRAGHSFSSALGMLGSEFAEPMAGEFRIVFDEINYG 202

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           ++L+E++  +   +P+ ++ +F   + +Q + GGNL+E L +++ ++R R  +  KV+ L
Sbjct: 203 VTLNEALLNLATRVPVGDLRYFVIAVLIQRETGGNLAEILDSIASLVRARLQLFDKVRVL 262

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + S WI+  LPF  +  +   +P + +VL  DP G  ++      M++GI+ MR +
Sbjct: 263 SAEGRLSGWILALLPFASAGAMQVVNPTFFSVLWEDPAGLQIIETMLVSMVLGILWMRRI 322

Query: 183 INFDV 187
           +   V
Sbjct: 323 VQIRV 327


>gi|255263835|ref|ZP_05343177.1| type II secretion system protein [Thalassiobium sp. R2A62]
 gi|255106170|gb|EET48844.1| type II secretion system protein [Thalassiobium sp. R2A62]
          Length = 322

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 100/187 (53%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +  KKR A   +  P+A++++VRS+R G P + AVA++  +  DP+ SE   + +   
Sbjct: 136 VNNKAKKRLALIEEQLPDAVELMVRSLRVGHPFTSAVAIVAKEVPDPLGSEMGVISDEAA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   + +Q++ F +  +++Q Q GGNL+E L  L++++R R  +  +V+
Sbjct: 196 YGRDVGEALKAMAERLEMQDMRFLAVAVTIQQQAGGNLAEILHGLAQVIRARFKLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EAK S   +   P     ++    P Y + +           V A F++  + VMR
Sbjct: 256 AITAEAKWSGMFLSLFPLGALVMINVIQPNYYDAVSETSVFIPACLVVAGFLVANMFVMR 315

Query: 181 LMINFDV 187
           +++N  V
Sbjct: 316 MLVNIKV 322


>gi|300692335|ref|YP_003753330.1| Tad secretion system, pilus assembly protein [Ralstonia
           solanacearum PSI07]
 gi|299079395|emb|CBJ52066.1| Tad secretion system, pilus assembly protein [Ralstonia
           solanacearum PSI07]
          Length = 325

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 92/177 (51%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           K     P A D++ R++RAG     A+ +   +   P+ SEF  V    + G+ + E+++
Sbjct: 149 KLEAQLPEATDLLARALRAGHSFPSALDMAGSELPAPIASEFALVFSEINYGVPMGEALA 208

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
              R +P++++ F    + +Q + GGNL+E L N+  ++R R  +  K++ LS E +   
Sbjct: 209 AFSRRVPIEDLRFLVIAVLIQRESGGNLAEILDNIGTLIRKRLQLLDKIRVLSAEGRLGG 268

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           WI+  +P  +  L+YF +P  ++ L   P G  LL  A     +G++ +R ++   V
Sbjct: 269 WILSLMPPVLGVLMYFLNPTLVSSLWTHPLGIQLLWAAIIMTGVGMLWIRHLVRIHV 325


>gi|225174957|ref|ZP_03728954.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169597|gb|EEG78394.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
          Length = 322

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 56/181 (30%), Positives = 101/181 (55%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R     +  P AL+II   +RAG     A+AV+  +   P+  EF RV+    LG S+ 
Sbjct: 142 RRMQALNNQLPEALNIISSGLRAGYSFPQAMAVVGREMDAPIADEFNRVLRDNRLGKSMD 201

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  M      +++    T + +Q Q+GGN++E L  +   +R+R  +K +++AL+ + 
Sbjct: 202 DALLEMTARTDNEDLDLVVTSLLIQRQVGGNMAEVLNKIEHTIRERMRIKGEIRALTAQQ 261

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + SA II  LP  V+ L+   +P YM  L+ +P G M+L +A    ++GIM++R ++  +
Sbjct: 262 RMSAVIIVLLPIAVALLLLVINPEYMLTLVTEPIGIMVLSIAVIMQIVGIMIIRRIVQIE 321

Query: 187 V 187
           V
Sbjct: 322 V 322


>gi|323529409|ref|YP_004231561.1| Type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1001]
 gi|323386411|gb|ADX58501.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1001]
          Length = 327

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 104/185 (56%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               KR        P A D+I R++RAG   S A+ ++  + ++P   EFR V +  + G
Sbjct: 143 RARSKRLRLLERQLPEAADMISRALRAGHSFSSAIGMLGNEFAEPTGGEFRIVFDEINYG 202

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           ++L+E++  +   +P++++ FF   + +Q + GGNL+E L  ++ ++R+R  +  +V+ L
Sbjct: 203 VTLNEALLNLATRVPVRDLRFFVIAVLIQRETGGNLAEILDGIASLVRERLRLFDQVRVL 262

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAWIIG LPF  +  +   +P +++VL  DP G  ++      M+ G++ MR +
Sbjct: 263 SAEGRLSAWIIGLLPFAAAGGMNLLNPSFLSVLWEDPAGLKVIEAVLVSMVFGVLWMRRI 322

Query: 183 INFDV 187
           +   V
Sbjct: 323 VRIRV 327


>gi|253996762|ref|YP_003048826.1| type II secretion system protein [Methylotenera mobilis JLW8]
 gi|253983441|gb|ACT48299.1| type II secretion system protein [Methylotenera mobilis JLW8]
          Length = 322

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 58/184 (31%), Positives = 105/184 (57%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             +KR        P+ALD++ R++ AG     A+ ++  +  +P+ SEFR V +  + G+
Sbjct: 139 AKQKRINTIEQQLPSALDLMGRAMVAGHAFPSALQMVGTEMPEPIASEFRIVFDEINYGI 198

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
             SE++  +++ +P  +VS+F   + +Q + GGNL+E L N+S ++R R  +   V+ LS
Sbjct: 199 PTSEALMNLIQRVPSTDVSYFVIAVLIQRETGGNLAELLGNISELIRARLKLLGSVRVLS 258

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAWI+  LPF +  ++   +P ++++L  DP G  ++ +A   M+ GI VM  +I
Sbjct: 259 AEGRLSAWILTLLPFALGAVLQLVNPKFLSILWTDPNGLKMVIIALILMVFGIFVMWRII 318

Query: 184 NFDV 187
              V
Sbjct: 319 KIRV 322


>gi|187251610|ref|YP_001876092.1| TadB [Elusimicrobium minutum Pei191]
 gi|186971770|gb|ACC98755.1| TadB [Elusimicrobium minutum Pei191]
          Length = 535

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 96/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+L ++R  K  +   ++L ++  S++AG+ +  A  ++      P+  EF  VI+   
Sbjct: 349 LKNLKRRRGTKINNQLMDSLILLSNSLKAGMDIVQAFEMVSKDMKPPIADEFGLVIKNYQ 408

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S  +++  M   +  + +S+    I +Q Q+GGNL++    +   +R+   ++ K+Q
Sbjct: 409 LGSSFEQALEMMEDRVENRLLSYMIKAIVLQRQVGGNLTKIFERIVETIREESKLEEKLQ 468

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ + +  + ++G +P+ + ++++   P  M        G ++L     ++L+G+ ++ 
Sbjct: 469 AMTAQQRIQSIVVGIMPWLMISVMFLFRPDAMINFYTSGIGLIVLFFCIFWILMGMKMVS 528

Query: 181 LMINFDV 187
            +    V
Sbjct: 529 KLGEIKV 535


>gi|188581664|ref|YP_001925109.1| type II secretion system protein [Methylobacterium populi BJ001]
 gi|179345162|gb|ACB80574.1| type II secretion system protein [Methylobacterium populi BJ001]
          Length = 323

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 90/187 (48%), Positives = 136/187 (72%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   K+R A F+++ PNA+D++VR +R+G+P+ D + +I  ++ +P+RSEFR  +E Q 
Sbjct: 137 LKWRQKRRVAAFVEELPNAMDVVVRGLRSGIPLGDCLRMISREAKEPLRSEFRVAMEAQA 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GL +S++I RM   +P+ EV+FFS VI +Q + GGNLSEAL+NLSR+LR+RK M  K+Q
Sbjct: 197 MGLPMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALSNLSRVLRERKKMAGKIQ 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIG+LPF +    Y +SP Y ++L     G + L ++  +ML G++VM+
Sbjct: 257 AMSMEAKASAGIIGALPFLIGGGTYLSSPDYTSLLWTTSVGKIALVISGLWMLAGVLVMK 316

Query: 181 LMINFDV 187
            MI+FDV
Sbjct: 317 KMISFDV 323


>gi|170740617|ref|YP_001769272.1| type II secretion system protein [Methylobacterium sp. 4-46]
 gi|168194891|gb|ACA16838.1| type II secretion system protein [Methylobacterium sp. 4-46]
          Length = 322

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 88/187 (47%), Positives = 141/187 (75%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L K+R A+F+ + PNA+D+IVR +++GLPV D + +I  ++ +PVR+EFR ++E+Q 
Sbjct: 136 LGYLRKRRIARFVLELPNAMDVIVRGIKSGLPVGDCLRIIAREAPEPVRTEFRALVESQA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+SLSE+ +++   MP+ E +FF+ VI +Q++ GGNLSEAL NLSR+LRDR+ M  KV 
Sbjct: 196 VGVSLSEAATKLFERMPVSEANFFAIVIGIQAKSGGNLSEALGNLSRVLRDRRRMADKVS 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEA+ASA II SLPF V+ L YF+SP Y+++L     G + + ++  +M++G++VM+
Sbjct: 256 AMSMEARASAAIIASLPFVVAVLCYFSSPDYISLLWTTQVGQIAITLSGLWMVVGVLVMK 315

Query: 181 LMINFDV 187
            MI F++
Sbjct: 316 RMITFEI 322


>gi|284991839|ref|YP_003410393.1| Type II secretion system F domain-containing protein
           [Geodermatophilus obscurus DSM 43160]
 gi|284065084|gb|ADB76022.1| Type II secretion system F domain protein [Geodermatophilus
           obscurus DSM 43160]
          Length = 310

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 93/186 (50%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     +R A F D   ++L ++  S+RAG  +  AV  +  +++ P   EF R++    
Sbjct: 124 LGLKRGRRQAAFADQLDDSLQLMASSLRAGHSLLRAVDAVSTEAAAPTSEEFARIVNETR 183

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G  L +++  +   M   +  + +  I +  ++GGNL+E L  +   +R+R  ++ +V+
Sbjct: 184 VGRDLGDALDEVAERMDSDDFRWVAQAIGIHREVGGNLAEVLDTVGHTIRERNAIRRQVK 243

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E K SA ++ +LPF +   +  T+P Y+        G++++      + +G + ++
Sbjct: 244 ALSAEGKLSAVVLMALPFGIVGFLSVTNPAYLAGFTEGLAGYLMIAAVVVLLTVGGLWLK 303

Query: 181 LMINFD 186
             +   
Sbjct: 304 KTVAIR 309


>gi|283852077|ref|ZP_06369351.1| type II secretion system protein [Desulfovibrio sp. FW1012B]
 gi|283572467|gb|EFC20453.1| type II secretion system protein [Desulfovibrio sp. FW1012B]
          Length = 327

 Score =  114 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 113/187 (60%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR A F    P AL+++ R+++AG   S  + ++V + ++P+R EF++ +E  +
Sbjct: 141 IAMRKAKRMAAFETQLPEALELVGRALKAGHTFSSGMGMVVSEFAEPIRGEFQKTMEEVN 200

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ ++ ++  ++  +   +++FF   + +Q++ GGNL+E + N++ ++R+R  +K +++
Sbjct: 201 FGMGVTVALDNLMERVDCPDLNFFVISVKIQNETGGNLAEIVENIAWLIRERIKLKGRIR 260

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + +AW++  LPF V   V   +PGY+N+L  +  G   L + A  M +G++V+R
Sbjct: 261 VLSAEGRMAAWVLCLLPFFVCGAVQMLNPGYLNLLFTEALGRFFLYLVAGLMTLGVLVIR 320

Query: 181 LMINFDV 187
            M+  DV
Sbjct: 321 KMVRIDV 327


>gi|284048523|ref|YP_003398862.1| Type II secretion system F domain protein [Acidaminococcus
           fermentans DSM 20731]
 gi|283952744|gb|ADB47547.1| Type II secretion system F domain protein [Acidaminococcus
           fermentans DSM 20731]
          Length = 321

 Score =  114 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 91/187 (48%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  I +R   F     + L ++  S+RAG      + +I  +   P+ +EF  V+    
Sbjct: 135 LQRRISRRKEAFERQLADCLTLVSNSLRAGFSFLQTMEIISREMQPPMSTEFANVMRNTS 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG ++ +++  M + +  ++ S   T + +Q Q+GGNL+  L  +   + +R  ++ +V 
Sbjct: 195 LGRTMEDALQEMDQRVGNEDFSLVITAVLIQQQVGGNLATILDTIRETISERIRLRREVG 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L+ + K S  ++  +P  +      TSP Y+  L+    G M +G A    +IG +++ 
Sbjct: 255 TLTAQGKFSGLVLTCIPVALGLFFAVTSPEYLKPLLTTSIGKMAIGAAVVMEIIGYLIIS 314

Query: 181 LMINFDV 187
            +++  +
Sbjct: 315 RIVDIKI 321


>gi|307726379|ref|YP_003909592.1| type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1003]
 gi|307586904|gb|ADN60301.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1003]
          Length = 327

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 102/185 (55%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               KR        P A D+I R++RAG   S A+ ++  + ++P   EFR V +  + G
Sbjct: 143 RARSKRLRVLERQLPEAADMISRALRAGHSFSSAIGMLGNEFAEPTGGEFRIVFDEINYG 202

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           ++L+E++  +   +P+ ++ +F   + +Q + GGNL+E L  ++ ++R+R  +  +V+ L
Sbjct: 203 VTLNEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAEILDGIASLVRERLRLFDQVRVL 262

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAWIIG LPF  +  +   +P +++VL  DP G  L+      M  G++ MR +
Sbjct: 263 SAEGRLSAWIIGLLPFAAAGAMNLLNPSFLSVLWEDPAGLKLIEAVLVSMAFGVLWMRRI 322

Query: 183 INFDV 187
           +   V
Sbjct: 323 VRIRV 327


>gi|167566942|ref|ZP_02359858.1| Flp pilus assembly protein TadB [Burkholderia oklahomensis EO147]
 gi|167574011|ref|ZP_02366885.1| Flp pilus assembly protein TadB [Burkholderia oklahomensis C6786]
          Length = 325

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 104/177 (58%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           K     P+A D+I R++RAG   S A++++ G+ ++P+  EFR   +  + G+ L E++ 
Sbjct: 149 KLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYGVPLQEALL 208

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            +   +P+ ++ +F   + +Q + GGNL+E L  ++ ++R+R  +  KV+ LS E K SA
Sbjct: 209 NLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKVRVLSAEGKLSA 268

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           WI+  LPF  + L+   +P ++ VL  DP G +L+GV    M  GI+ MR +I   V
Sbjct: 269 WILTLLPFGTAALLAIMNPDFIAVLWQDPAGVLLVGVTITSMAFGIVWMRYIIRIRV 325


>gi|83943935|ref|ZP_00956392.1| type II/IV secretion system protein, TadC subfamily protein
           [Sulfitobacter sp. EE-36]
 gi|83954508|ref|ZP_00963219.1| type II/IV secretion system protein, TadC subfamily protein
           [Sulfitobacter sp. NAS-14.1]
 gi|83840792|gb|EAP79963.1| type II/IV secretion system protein, TadC subfamily protein
           [Sulfitobacter sp. NAS-14.1]
 gi|83845182|gb|EAP83062.1| type II/IV secretion system protein, TadC subfamily protein
           [Sulfitobacter sp. EE-36]
          Length = 320

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 100/187 (53%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR     +  P+A++++VRS+R G P + A++++  +  DP+ SEF  + +   
Sbjct: 134 ISSKAKKRMDMIEEQLPDAVELMVRSLRVGHPFTSAISIVSKEIQDPLASEFGVIADETA 193

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   + +Q++ F +  +++Q Q GGNL+E LA L++++R R  +  +V+
Sbjct: 194 YGRDIGEALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFRLFRRVR 253

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EAK S   + + P     ++    P Y + ++  P           F+ + ++VMR
Sbjct: 254 AITAEAKWSGKFLSAFPILALIVIKLGDPHYYDEVMTHPLFIPGCIAVVLFLSLNLIVMR 313

Query: 181 LMINFDV 187
            + +  V
Sbjct: 314 KLTDIKV 320


>gi|77462449|ref|YP_351953.1| putative Flp pilus assembly protein TadB [Rhodobacter sphaeroides
           2.4.1]
 gi|126461327|ref|YP_001042441.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|221638312|ref|YP_002524574.1| Type II secretion system protein [Rhodobacter sphaeroides KD131]
 gi|77386867|gb|ABA78052.1| Putative Flp pilus assembly protein TadB [Rhodobacter sphaeroides
           2.4.1]
 gi|126102991|gb|ABN75669.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|221159093|gb|ACM00073.1| Type II secretion system protein [Rhodobacter sphaeroides KD131]
          Length = 322

 Score =  114 bits (284), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 98/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR A   +  P+A++++VRS+R G P S A+ ++  +  DP+ +EF  + +   
Sbjct: 136 VNGKAKKRMALIEEQLPDAVELMVRSLRVGHPFSSAIQIVAKEVPDPLGTEFGVIADEAA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  ++E I      M  Q++ F +  +++Q Q GGNL+E L  L++++R R  +  +V+
Sbjct: 196 YGRDVAECIRAFAERMESQDLRFLAVAVTIQQQSGGNLAEILEGLAKVIRSRFKLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EAK S   + + P      +    P Y + +   P       V  AF++  ++ M+
Sbjct: 256 AITAEAKWSGTFLSAFPIVALVAISILKPDYYDGVKETPLFIPAALVVGAFLIANVIFMK 315

Query: 181 LMINFDV 187
           +M+N  V
Sbjct: 316 IMVNIKV 322


>gi|319782177|ref|YP_004141653.1| type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168065|gb|ADV11603.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 322

 Score =  114 bits (284), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 62/185 (33%), Positives = 108/185 (58%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +    KR  KF    P+ALD+IVRS+RAG P S A+ ++  +  DP+ +EF  V +    
Sbjct: 137 RRARNKRIRKFAKQLPDALDMIVRSLRAGHPASVAIGLVAREMPDPLGTEFGIVSDEITF 196

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           GLS+ +++ ++ + +  + +   S  +S+QS+ GGNL+E LANLS ++R+R+ ++ K++A
Sbjct: 197 GLSIEQAVRKLSQRVGFEGLQLLSVSLSIQSKTGGNLTEILANLSSVMRERQKLRMKIRA 256

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           LS E + SAWII   P  +   +   +P Y   + ++P    +  +   + L+G  +M  
Sbjct: 257 LSAEGRVSAWIISLFPIVMFFTLQILAPTYYGAVWSNPLVFPVFLIFGLWALLGDFIMYR 316

Query: 182 MINFD 186
           M+ FD
Sbjct: 317 MVTFD 321


>gi|254461341|ref|ZP_05074757.1| type II secretion system protein [Rhodobacterales bacterium
           HTCC2083]
 gi|206677930|gb|EDZ42417.1| type II secretion system protein [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 322

 Score =  114 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 103/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + H  KKR +   +  P+A++++VRS+R G P S AV ++  +  DP+ SE   + +   
Sbjct: 136 ISHKAKKRMSMLEEQLPDAVELMVRSLRVGHPFSSAVQIVAKEVQDPLASEMGVIADESA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   +  Q++ F +  +++Q Q GGNL+E LA L++++R R  +  +V+
Sbjct: 196 YGRDVGEALKAMAERLDNQDLRFLAVAVTIQQQSGGNLAEILAGLAQVIRARFRLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EA+ S   + S P      +    P Y + +++         + AAF+ + ++VMR
Sbjct: 256 AITAEAQWSGKFLSSFPLMALVAIQLGDPNYYDPVLDHEWFIPACFLVAAFLGVNLIVMR 315

Query: 181 LMINFDV 187
           +++N  V
Sbjct: 316 ILVNIKV 322


>gi|313902405|ref|ZP_07835808.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
           13965]
 gi|313467336|gb|EFR62847.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
           13965]
          Length = 367

 Score =  114 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 98/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R   F    P+AL ++  ++++G     A  V+  +   P+  EF  +++   
Sbjct: 181 LARRYQQRLRAFDGQLPDALTLMANALKSGYSFLQAADVVAREMPPPIADEFAWLVKETR 240

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           + + L ++++ ++  +P  ++    T + +Q Q+GGNL+  L   +  +R+R  ++ +++
Sbjct: 241 VNIPLEDALANLLDRVPSADLDLVVTAVLIQKQVGGNLAGVLERTAETIRERVRLQGQIR 300

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L+ + + S WI+G+LP  +  L+   +P Y+  L+  P G  LLG        G++V+R
Sbjct: 301 TLTAQGRLSGWIVGALPVALLVLLSAMNPAYLQPLLATPLGWTLLGAGVVMEAAGVLVIR 360

Query: 181 LMINFDV 187
            +I  DV
Sbjct: 361 ALIRVDV 367


>gi|126729094|ref|ZP_01744908.1| type II/IV secretion system protein, TadC subfamily [Sagittula
           stellata E-37]
 gi|126710084|gb|EBA09136.1| type II/IV secretion system protein, TadC subfamily [Sagittula
           stellata E-37]
          Length = 321

 Score =  114 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 98/184 (53%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             KKR +   +  P+A++++VRS+R G P + A+ ++  +  DP+ +EF  + +    G 
Sbjct: 138 KAKKRLSMIEEQLPDAVELMVRSLRVGHPFTSAITIVSKEIKDPLATEFGIIADESAYGR 197

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            + E++  M   + +Q++ F +  +++Q Q GGNL+E L  L++++R R  +  +V+A++
Sbjct: 198 DIGEALKHMAERLDMQDLRFLAVAVAIQQQAGGNLAEILEGLAKVIRARFRLFRRVKAIT 257

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            EA+ S   +   P      +    P Y + +++ P       +    + + ++VMR ++
Sbjct: 258 AEAQWSGKFLSGFPVMALIFIQVAKPDYYDEVLDHPWFIPACFIVGIMLALNMIVMRWLV 317

Query: 184 NFDV 187
           N  V
Sbjct: 318 NIKV 321


>gi|78357407|ref|YP_388856.1| hypothetical protein Dde_2364 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219812|gb|ABB39161.1| membrane protein, putative [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 321

 Score =  114 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 104/184 (56%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
              +R  +F    P+ALD+I R+++AG      + ++  + +DPV  EF+  ++  + G+
Sbjct: 138 RRTRRMNRFHRQLPDALDLIARALKAGHAFPQGMRMVADEFADPVGPEFQITLDEINFGV 197

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S   ++  M R +   ++ FF   +++Q + GGNL+E ++ ++ +LR+R  +  +V+ LS
Sbjct: 198 SPDAALHAMTRRVDCADLRFFVVSVNIQRETGGNLAEIVSGIALLLRERFKLHGRVKVLS 257

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + +AWI+ +LPF +  +++  +P +M+ L   P G+MLL  +   M  G + ++ + 
Sbjct: 258 AEGRLTAWILFALPFGIGFIIHLLNPDFMSALYTTPEGNMLLNGSLFLMTAGALALKKLT 317

Query: 184 NFDV 187
              V
Sbjct: 318 TIRV 321


>gi|303241710|ref|ZP_07328207.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
 gi|302590711|gb|EFL60462.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
          Length = 327

 Score =  114 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 103/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K  IKKR     D   +A+ +I  S++AG     AV ++  + + P+  EF ++ +  +
Sbjct: 141 IKIKIKKRLRILNDQLNDAIVLISNSLKAGYSFFQAVDIVSKEMTGPMAEEFAQLQKEVN 200

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +  +++  +V  +   ++    T + +Q Q+GGNLSE L N+S  +R+R  +K +V+
Sbjct: 201 FGTTTEKALENLVTRVTSDDLELVVTAVLIQRQVGGNLSEVLDNISTTIRERIRIKGEVK 260

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++ + + S  II +LP  +  +++  +  ++ VL  DP G ++LG +    +IGI  + 
Sbjct: 261 TVTAQGRMSGMIIAALPPALGFILFLINKSHVMVLFTDPIGLIILGFSVFMEIIGIYFIS 320

Query: 181 LMINFDV 187
            +++ +V
Sbjct: 321 RIVSIEV 327


>gi|116620535|ref|YP_822691.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223697|gb|ABJ82406.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 323

 Score =  113 bits (283), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 60/187 (32%), Positives = 104/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++    KR A   + FP +LD + RS+RAG   S ++ ++  + +DP+  EFR +   Q+
Sbjct: 137 VRQKRSKRLATLEEQFPESLDFLARSMRAGHAFSISLEMLGEELADPLGQEFRALFNEQN 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  L  ++      +PL +V FF++ + +Q Q GGNLSE LA L+ ++R+R  +K +V+
Sbjct: 197 LGAPLDTALRNFTTRVPLLDVRFFTSSVLLQKQTGGNLSEILARLAYVIRERFRLKGQVK 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A S   + +A I+  LP      +   +PGY+  + +D  G  L+G A    ++G   ++
Sbjct: 257 AASAHGRLTATILTLLPVGTMLALLVVAPGYLQGMADDSDGKYLIGGAIVAQVLGNYFIK 316

Query: 181 LMINFDV 187
            +IN  V
Sbjct: 317 RIINIKV 323


>gi|297618077|ref|YP_003703236.1| type II secretion system F domain protein [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297145914|gb|ADI02671.1| Type II secretion system F domain protein [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 329

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 99/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++H   +R   F     +AL I+  ++RAG     A+  +  +   P+ +EF   +    
Sbjct: 143 LQHKKGERLKTFNQQLGDALVIMANALRAGFGFQQAMETVRRELPPPISTEFEWTLREIQ 202

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +  ES+  +   +   ++    T + +Q Q+GGNL++ L N+SR +RDR  +K +++
Sbjct: 203 LGSTTEESLLNLCERVKSDDLDMVVTAVLIQRQVGGNLAQILDNISRTIRDRTRIKGEIR 262

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L+ + + S  IIG LP  +  ++   +PGYM   + +P G  LL  AA   L G+ V++
Sbjct: 263 TLTAQGRLSGIIIGLLPIALLFILLILNPGYMTPFLQNPLGLYLLSGAAVSELAGLYVIK 322

Query: 181 LMINFDV 187
            +++ DV
Sbjct: 323 KIVDIDV 329


>gi|260428144|ref|ZP_05782123.1| type II secretion system protein [Citreicella sp. SE45]
 gi|260422636|gb|EEX15887.1| type II secretion system protein [Citreicella sp. SE45]
          Length = 321

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 106/187 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR +   +  P+A++++VRS+R G P S A++V+  +  DP+ +EF  + +   
Sbjct: 135 VNGKARKRLSLIEEQLPDAVELMVRSLRVGHPFSSAISVVSCEIKDPLATEFGIIADEST 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + ES+  M   + +Q++ F +  +++Q Q GGNL+E L  L++++R R  +  +V+
Sbjct: 195 YGRDIGESLKHMAERLDMQDLRFLAVAVTIQQQSGGNLAEILEGLAKVIRARFRLFRRVK 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EA+ S   +   P  V  ++  T P Y + +++ P       + A F+ + ++VMR
Sbjct: 255 AITAEAQWSGKFLSGFPVAVLLIIQLTDPHYYDEVLDHPWFIPACFIVAIFLALNLIVMR 314

Query: 181 LMINFDV 187
           +++N  V
Sbjct: 315 MLVNIKV 321


>gi|332560333|ref|ZP_08414655.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N]
 gi|332278045|gb|EGJ23360.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N]
          Length = 322

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 98/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR A   +  P+A++++VRS+R G P S A+ ++  +  DP+ +EF  + +   
Sbjct: 136 VNGKAKKRMALIEEQLPDAVELMVRSLRVGHPFSSAIQIVAKEVPDPLGTEFGVIADEAA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  ++E I      M  Q++ F +  +++Q Q GGNL+E L  L++++R R  +  +V+
Sbjct: 196 YGRDVAECIRAFAERMESQDLRFLAVAVTIQQQSGGNLAEILEGLAKVIRSRFKLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EAK S   + + P      +    P Y + +   P       V  AF++  ++ M+
Sbjct: 256 AITAEAKWSGTFLSAFPIVALVAISILKPDYYDGVKETPLFIPAALVVGAFLIANVIFMK 315

Query: 181 LMINFDV 187
           +M+N  V
Sbjct: 316 IMVNIKV 322


>gi|149178504|ref|ZP_01857092.1| secretion system protein TadB [Planctomyces maris DSM 8797]
 gi|148842619|gb|EDL56994.1| secretion system protein TadB [Planctomyces maris DSM 8797]
          Length = 310

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 96/186 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +  KKR     ++ P  +D++ RS  AG  +  A+A++  ++  P+  EFRR      
Sbjct: 124 LHYRRKKRMQTIQEELPEMIDLLARSTHAGASLEQAIAIVGEETKGPLSFEFRRCARQLD 183

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           + LS+   +  +   + L ++   ++ + +  + GGNL   L  ++ ++RDR N + +++
Sbjct: 184 MNLSVPAVMKSLSSRIQLIDLKILTSTLMLYRKTGGNLPANLERMADVVRDRINYRRQMK 243

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A +   +ASA ++  +      ++    P +++ L  DP G++LL +A    +IGI+ + 
Sbjct: 244 ASTGAGRASALLMTVVAPVAFVVLLVAFPAHVSNLYTDPIGNILLLIAIVLEVIGILWVS 303

Query: 181 LMINFD 186
            ++  D
Sbjct: 304 TLLRTD 309


>gi|323529157|ref|YP_004231309.1| Type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1001]
 gi|323386159|gb|ADX58249.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1001]
          Length = 282

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 95/186 (51%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K + KKR        P+AL ++  ++RAG     A+  +V ++  P+  EF  ++    L
Sbjct: 97  KRMHKKRVEAIEKQLPDALLMMSGALRAGASFPTALEAVVHETPPPISQEFDLLMREIRL 156

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ L  ++  + + +P+ +    +  +++  ++GGNL+EAL +++R LR++  M+ K++A
Sbjct: 157 GIDLDIAMRNVEKRIPIPDFLMMTAAVTIAREVGGNLAEALESVARTLREKLTMEGKIKA 216

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ + +    ++  LP  +  ++ F  P  M  L   P G   L V     L+G   +  
Sbjct: 217 LTSQGRMQGIVMTCLPLFLMLVLRFMEPKAMAPLFTKPVGWATLAVIGVMELLGYFSISK 276

Query: 182 MINFDV 187
           + + DV
Sbjct: 277 ITHIDV 282


>gi|307726637|ref|YP_003909850.1| type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1003]
 gi|307587162|gb|ADN60559.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1003]
          Length = 282

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 94/185 (50%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            + KKR        P+AL ++  ++RAG     A+  +V ++  P+  EF  ++    LG
Sbjct: 98  RMRKKRIEVIEQQLPDALLMMSGALRAGASFPTALEAVVHETPPPISQEFDLLMREIRLG 157

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + L  ++  + + +P+ +    +  +++  ++GGNL+EAL +++R LR++  M+ K++AL
Sbjct: 158 IDLDIAMRNVEKRIPVPDFLMMTAAVTIAREVGGNLAEALESVARTLREKLTMEGKIRAL 217

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + + +    ++  LP  +  ++ F  P  M  L   P G   L V     L+G   +  +
Sbjct: 218 TSQGRMQGIVMTCLPLFLMLVLRFMEPKAMAPLFTQPVGWATLAVIGVMELLGYFSISKI 277

Query: 183 INFDV 187
            N DV
Sbjct: 278 TNIDV 282


>gi|260431088|ref|ZP_05785059.1| type II/IV secretion system protein, TadC subfamily [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414916|gb|EEX08175.1| type II/IV secretion system protein, TadC subfamily [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 322

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 97/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + H  KKR A   +  P+A++++VRS+R G P   ++ ++  +  DP+ +EF  + +   
Sbjct: 136 VNHKAKKRMALLEEQLPDAVELMVRSLRVGNPFVSSIQIVANEVQDPLGTEFGVIADECA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   + +Q++ F +  + +Q Q GGNL+E LA L++++R R  +  +V 
Sbjct: 196 YGRGVGEALKDMAERLDMQDLRFLAVAVGIQQQSGGNLAEILAGLAKVIRARFRLFRRVN 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EAK S   +   P      +    P Y + +++ P            + + ++VMR
Sbjct: 256 AITAEAKWSGKFLSGFPVFCLVFILVKDPNYYDTVLDHPWFIPACFFVGIMLTLNLIVMR 315

Query: 181 LMINFDV 187
           ++ N  V
Sbjct: 316 ILTNIKV 322


>gi|86137997|ref|ZP_01056573.1| type II/IV secretion system protein, TadC subfamily protein
           [Roseobacter sp. MED193]
 gi|85825589|gb|EAQ45788.1| type II/IV secretion system protein, TadC subfamily protein
           [Roseobacter sp. MED193]
          Length = 322

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 96/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR A   +  P+A++++VRS+R G P +  V ++  +  DP+ +EF  + +   
Sbjct: 136 VNRKAGKRMALIEEQLPDAVELMVRSLRVGHPFNSTVQIVAHEIEDPLATEFGIIADECA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   + +Q++ F S  +++Q Q GGNL+E LA L++++R R  +  +V+
Sbjct: 196 YGRDIGEALKEMAERLDIQDLRFLSVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EA+ S   + + P           P Y + +++ P            + + + VMR
Sbjct: 256 AITAEAQWSGKFLSAFPLLALIGTLLKDPNYYDDVMDHPYFIPACFFVGIMLTVNLFVMR 315

Query: 181 LMINFDV 187
           ++ N  V
Sbjct: 316 VLTNIKV 322


>gi|323702117|ref|ZP_08113785.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
           574]
 gi|323532999|gb|EGB22870.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
           574]
          Length = 323

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 104/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   +KR AKF     +AL I+  S+R+G     A+ ++  +  +P+  EF R  +   
Sbjct: 137 LRMARQKRLAKFNAQIGDALVIMANSLRSGFSFLQAMDMVRKELPNPISREFGRAFQEMS 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG    E++  M + +   ++    T + +Q Q+GGNL+E L N++  +R+R  +K +++
Sbjct: 197 LGTPTEEALQNMAQRVKSDDLDLVITAVLIQRQVGGNLAEVLDNIADTIRERVRIKGQIR 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           +++ + + S  +IG LPF ++ L+   SP Y+  L N   G +++  A    +IG++ ++
Sbjct: 257 SITAQGRISGMVIGFLPFALAALMLVISPQYIMTLFNSKIGLIMVASAIFSEVIGVVAIK 316

Query: 181 LMINFDV 187
            +++ +V
Sbjct: 317 KIVDIEV 323


>gi|325964117|ref|YP_004242023.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470204|gb|ADX73889.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 309

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 93/186 (50%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L  +R AKF     + + +++  +R G  V  +V     ++  P   E  R++    
Sbjct: 123 LAILRDRRRAKFEGQLTDTIQMLIGGLRVGHSVLRSVEAAAQEADVPTSEELLRIVNETR 182

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G     +   +   M  ++  + S  I +  ++GG+L+E L  ++  +R+R  +K +++
Sbjct: 183 IGKDSRLAFEDVAERMDSEDFRWISQAIQINREVGGDLAEVLEQVAGTIRERSEIKGQIR 242

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           +LS E K SA+++ ++P  V+ ++ F + GY+NV +  P G ++L +A     +G   M 
Sbjct: 243 SLSAEGKMSAYVLMAMPVGVAFILAFINSGYLNVFVEKPLGLVMLVMAIVMFTVGGFWMS 302

Query: 181 LMINFD 186
            ++   
Sbjct: 303 RVVKIK 308


>gi|317154601|ref|YP_004122649.1| type II secretion system F domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944852|gb|ADU63903.1| Type II secretion system F domain protein [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 324

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 115/187 (61%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ L  +R  +F    P ALD++ R+++AG      + ++  + +DP+  EF + ++  +
Sbjct: 138 LRRLKARRMGRFQAQLPEALDLMSRALKAGHTFGGGMRMVANEFADPIGGEFGKTLDEIN 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  +++ +   + ++++ FF   +++Q + GGNL+E +AN++R++R+R  +  KV+
Sbjct: 198 YGMDVDRALANLQLRVDVEDLKFFVVSVNIQRETGGNLAEIIANIARLVRERFALFGKVR 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + SA ++ +LPF ++ ++YF +P Y+++L  +  G  +   A A M++GI+VMR
Sbjct: 258 VLSAEGRISALLLSALPFFIAGVLYFINPDYISLLWTNELGRSMAWGAVASMIVGIVVMR 317

Query: 181 LMINFDV 187
            M+   V
Sbjct: 318 RMVKIQV 324


>gi|83312844|ref|YP_423108.1| Flp pilus assembly protein TadB [Magnetospirillum magneticum AMB-1]
 gi|82947685|dbj|BAE52549.1| Flp pilus assembly protein TadB [Magnetospirillum magneticum AMB-1]
          Length = 330

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 80/187 (42%), Positives = 122/187 (65%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR   F   F +ALD++VR +R+GLP+ + +A+I  +  DPV +EFR++ E   
Sbjct: 144 LGMAAGKRLKAFASQFADALDVVVRGIRSGLPLGECIAIIGREMPDPVGAEFRQITEGTR 203

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GL+L E++ R V  MP+ E+ +F+ V+++Q Q GGNL+E LA LS +LR RK M+ KVQ
Sbjct: 204 IGLTLHEALGRAVERMPMAEMRYFAIVLAIQQQTGGNLAETLAKLSDVLRARKRMRDKVQ 263

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A + EA+ASA IIGSLP  V  ++   +P Y+ +L     G++LL +      +G++VMR
Sbjct: 264 AYAAEARASAAIIGSLPLVVVGMLGLVAPQYIALLFTSDLGNILLAIGVGTEAMGVLVMR 323

Query: 181 LMINFDV 187
            MINFD+
Sbjct: 324 NMINFDI 330


>gi|219850072|ref|YP_002464505.1| type II secretion system protein [Chloroflexus aggregans DSM 9485]
 gi|219544331|gb|ACL26069.1| type II secretion system protein [Chloroflexus aggregans DSM 9485]
          Length = 332

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 98/191 (51%), Gaps = 4/191 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K    +R   F +   + + ++  ++R G      + ++  ++ DP  +EFRRV++   
Sbjct: 142 VKVRAAQRVKAFNNQLGDVITMMANALRGGYSFLQTLDMVAREAPDPASTEFRRVVQEVG 201

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S  E++  ++R +P  ++    T +S+Q ++GGNL++ L  +   +R+R  +K ++ 
Sbjct: 202 LGRSTEEALQNLLRRVPSDDLDLLVTAVSIQMEVGGNLAQVLDTIGHTIRERVRIKGEIS 261

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLL-GVAAAFMLIGI 176
            L+ + + S+WII  LP  ++  +   +P YM  L      P+    +   +   + +G 
Sbjct: 262 TLTAQGRISSWIITGLPIGLAAFITVVNPDYMAPLFTFGLPPQAWCCMPVTSLFMIALGY 321

Query: 177 MVMRLMINFDV 187
             ++ +I+ +V
Sbjct: 322 FAIQKIIDIEV 332


>gi|56697923|ref|YP_168294.1| TadC family type II/IV secretion system protein [Ruegeria pomeroyi
           DSS-3]
 gi|56679660|gb|AAV96326.1| type II/IV secretion system protein, TadC subfamily [Ruegeria
           pomeroyi DSS-3]
          Length = 322

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 100/187 (53%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR +   +  P++++++VRS+R G P+  A+ ++  +S DP+ +EF  + +   
Sbjct: 136 VNQKAKKRLSLIEEQLPDSVELMVRSLRVGHPLVSAIQIVAKESEDPIATEFGIIADEAA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   + +Q++ F S  +++Q Q GGNL+E LA L++++R R  +  +V+
Sbjct: 196 YGREVGEALKEMAERLDMQDLRFLSVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EA+ S   + + P      +    P Y + +++         V    + + + VMR
Sbjct: 256 AITAEAQWSGKFLSAFPLGALLFILVKDPNYYDGVMDHELFIPACFVVGVMLTMNLFVMR 315

Query: 181 LMINFDV 187
           ++ N  V
Sbjct: 316 MLTNIKV 322


>gi|325518834|gb|EGC98408.1| flp type pilus assembly protein [Burkholderia sp. TJI49]
          Length = 325

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 101/177 (57%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           K     P+  D+I R++R+G   + A+ ++  +  +P+  EFR   +  + G+SL +++ 
Sbjct: 149 KLQRQLPDVCDMIARALRSGHAFTGALGMVGEEFPEPMGGEFRITFDEINYGVSLHDALM 208

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            +   +P+Q++ +F   + +Q + GGNL+E L +++ ++R+R  +  KV+ LS E + SA
Sbjct: 209 NLATRVPVQDLRYFVIAVLIQRETGGNLAELLDSIAGLIRERFKLFDKVRVLSAEGRLSA 268

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           WI+G LPF  + L+   +  +++VL  DP G  + G     M+ G+  MR +I   V
Sbjct: 269 WILGLLPFGTAALMALLNRDFLSVLWEDPAGVRMTGTMLVSMVFGLFWMRRIIRIRV 325


>gi|46580528|ref|YP_011336.1| hypothetical protein DVU2123 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449947|gb|AAS96596.1| membrane protein, putative [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234267|gb|ADP87121.1| Type II secretion system F domain protein [Desulfovibrio vulgaris
           RCH1]
          Length = 321

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 108/185 (58%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +R A+F    P+ALD++ R++RAG   +  + ++  +  DP+  EF++V++  + G
Sbjct: 137 RKRARRMARFQRQLPDALDLVGRALRAGHAFNQGMRMVADEFEDPIGPEFQKVLDEINYG 196

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +    ++  +VR +   ++ FF   +++Q + GGNL+E +  ++R++R+R  +  +V+ L
Sbjct: 197 VPADTALINLVRRVDCPDLKFFVVSVNIQRETGGNLAEIVTGIARLIRERFKLAGRVRVL 256

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + +AWI+ +LPF +  ++   +P +M+VL   P G++L+  +   M IG + ++ M
Sbjct: 257 SAEGRLTAWILLALPFGIGIIINMLNPDFMSVLYETPEGNLLMTGSLFQMTIGAIALKRM 316

Query: 183 INFDV 187
               V
Sbjct: 317 TTIRV 321


>gi|294012232|ref|YP_003545692.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
 gi|292675562|dbj|BAI97080.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
          Length = 333

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/187 (31%), Positives = 101/187 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L ++R  K  + FP ALD  VR +RAG P++ A+ ++  +  DP+ SEF  V++   
Sbjct: 147 LTRLAQRRRKKMEEQFPVALDTFVRGLRAGHPIAAALDLLTKEMRDPIGSEFGIVVDEVT 206

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L +++ RM     + E+  F   +SVQS+ GGNL+E L NLS ++R+R ++  KV+
Sbjct: 207 YGSDLRDALQRMAERWDMNEMHMFVISLSVQSETGGNLAEILENLSTVIRERASLFMKVR 266

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E + +A ++ +LP      ++  +P +   +  D    +         LIG   +R
Sbjct: 267 ALSSEGRMTAVMLTALPILAFVGLFLVNPAFYLDVAQDSMFIIGFVGLIVLYLIGFFTIR 326

Query: 181 LMINFDV 187
            M++  V
Sbjct: 327 RMVDLKV 333


>gi|120602155|ref|YP_966555.1| type II secretion system protein [Desulfovibrio vulgaris DP4]
 gi|120562384|gb|ABM28128.1| type II secretion system protein [Desulfovibrio vulgaris DP4]
          Length = 321

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 108/185 (58%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +R A+F    P+ALD++ R++RAG   +  + ++  +  DP+  EF++V++  + G
Sbjct: 137 RKRDRRMARFQRQLPDALDLVGRALRAGHAFNQGMRMVADEFEDPIGPEFQKVLDEINYG 196

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +    ++  +VR +   ++ FF   +++Q + GGNL+E +  ++R++R+R  +  +V+ L
Sbjct: 197 VPADTALINLVRRVDCPDLKFFVVSVNIQRETGGNLAEIVTGIARLIRERFKLAGRVRVL 256

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + +AWI+ +LPF +  ++   +P +M+VL   P G++L+  +   M IG + ++ M
Sbjct: 257 SAEGRLTAWILLALPFGIGIIINMLNPDFMSVLYETPEGNLLMTGSLFQMTIGAIALKRM 316

Query: 183 INFDV 187
               V
Sbjct: 317 TTIRV 321


>gi|46204164|ref|ZP_00050408.2| COG4965: Flp pilus assembly protein TadB [Magnetospirillum
           magnetotacticum MS-1]
          Length = 188

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 91/187 (48%), Positives = 134/187 (71%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+R A F+++ PNA+D+IVR +R+G+P+ D + +I  ++ +P+RSEFR  +E Q 
Sbjct: 2   LSRLQKRRVAAFVEELPNAMDVIVRGLRSGIPLGDCLRMISREAKEPLRSEFRIAMEAQA 61

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGL++ ++I RM   +P+ EV+FF+ VI +Q + GGNLSEAL NLSR+LR+RK M  K+Q
Sbjct: 62  LGLAMPDAILRMCERVPVTEVNFFAVVIGIQQKSGGNLSEALGNLSRVLRERKKMAGKIQ 121

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIG+LPF V+   Y +SP Y  +L     G + L ++  +M +GI VM+
Sbjct: 122 AMSMEAKASAVIIGALPFFVALATYLSSPDYTALLWTTAVGKIALVLSGLWMALGIFVMK 181

Query: 181 LMINFDV 187
            MI+FDV
Sbjct: 182 KMISFDV 188


>gi|292491526|ref|YP_003526965.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
 gi|291580121|gb|ADE14578.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
          Length = 323

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 103/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++    KR  KF +  P ALDI+ R+++AG P  + + V   +  DP+  EFR      +
Sbjct: 137 IRIERDKRIGKFEEQLPEALDIMSRAMKAGYPFVETLHVASEEMRDPLAKEFRTTFADIN 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+++  +   +++ +P   +    T + VQ   GGNL+E L  ++ ++R R   + KV+
Sbjct: 197 YGMNIKTAFLSLLQRVPSMSLMAVVTGVLVQRDTGGNLAEILEKIAAVVRGRFRFQRKVR 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             + E + SAWI+  +PF +S  ++  +P Y+ +L+ +P G  L+ +A   +++G+  MR
Sbjct: 257 TFTAEGRLSAWILTLVPFVLSAALHVINPEYLPMLVKEPLGRTLILLAFINIMVGVFWMR 316

Query: 181 LMINFDV 187
            +I  DV
Sbjct: 317 RIIRIDV 323


>gi|59713407|ref|YP_206182.1| TadB-like protein involved in pilus formation and/or protein
           secretion [Vibrio fischeri ES114]
 gi|59481655|gb|AAW87294.1| TadB-like protein involved in pilus formation and/or protein
           secretion [Vibrio fischeri ES114]
          Length = 307

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 88/182 (48%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L K+   +F + FP+AL+++  +V AG  +  AV  +       V  EF+R+ E   LG
Sbjct: 122 WLRKREKNRFEESFPDALNMMSSAVSAGEGIMQAVVFVGRSLDGKVGKEFKRMGEQLQLG 181

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S      +     P     FF   +    Q GG L E +  L+R++   + ++ K  AL
Sbjct: 182 ESPDTVFRKSCERFPYPSFQFFIITLRTSMQRGGQLKEVMKRLNRLMFGARAIEKKKLAL 241

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ASA I+ ++PF    ++ + SP     ++ +P G  +L        IGI+++ L+
Sbjct: 242 TSEARASAKIVAAIPFIFLFMLQYLSPENYEFVMFNPAGRPILYYVLISESIGILIIWLL 301

Query: 183 IN 184
           + 
Sbjct: 302 MR 303


>gi|197118216|ref|YP_002138643.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem]
 gi|197087576|gb|ACH38847.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem]
          Length = 316

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 105/187 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +  KKR   F +  P+A+ ++ RS+RAG  ++ AV +I  +  +P+   F+   E Q 
Sbjct: 130 LNYHRKKRRRLFAEQLPDAMVMMARSLRAGHSLAAAVELIGLELPEPIGGLFKLAYEQQK 189

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ +++S+  +   +  Q+ +FF TV  + S+ GGNLSE L  L+  LR R  ++ +V+
Sbjct: 190 LGVRIADSLISLRERVESQDFNFFLTVTRINSESGGNLSEILDKLAETLRSRLQIRRQVE 249

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++ E + S +++ +LP  +   +Y   PGY++V        ++LG A    ++G  ++R
Sbjct: 250 VITAEGRISGYVLVALPVVMFAGLYLLRPGYLDVFFTQRLCQLILGAAVLGQVVGFFIIR 309

Query: 181 LMINFDV 187
            ++N  +
Sbjct: 310 KIVNISI 316


>gi|320101694|ref|YP_004177285.1| type II secretion system F domain-containing protein [Isosphaera
           pallida ATCC 43644]
 gi|319748976|gb|ADV60736.1| Type II secretion system F domain protein [Isosphaera pallida ATCC
           43644]
          Length = 331

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/188 (29%), Positives = 104/188 (55%), Gaps = 1/188 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + ++ KKR   F    P AL++  R++RAG  +   + ++  + + P+  EF RV E Q+
Sbjct: 144 LNYMKKKRINDFTAAMPEALELTGRALRAGHGLGSGLKMVADEMTGPIAEEFGRVFEEQN 203

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ + E++  M   +P  +V FF T + +Q Q GG+L E L  +S ++R R  +K +V 
Sbjct: 204 LGIPMEEALRAMANRIPTMDVRFFVTAVVIQRQTGGDLGEVLDKISHLIRQRFEIKGQVA 263

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP-RGHMLLGVAAAFMLIGIMVM 179
           AL+ E + S  ++ ++P  +   ++ T+  Y+  L  DP  G  +L  AA   ++G + +
Sbjct: 264 ALTGEGRLSGAVLLAMPPLLLLYLFMTNRPYVMPLFTDPELGQPMLIGAAVLQILGALAI 323

Query: 180 RLMINFDV 187
           R +++  V
Sbjct: 324 RKIVDIKV 331


>gi|127511577|ref|YP_001092774.1| type II secretion system protein [Shewanella loihica PV-4]
 gi|126636872|gb|ABO22515.1| type II secretion system protein [Shewanella loihica PV-4]
          Length = 283

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 100/186 (53%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L K+R  KF+   P+AL++I  S+++G  VS+A+  +  +   P++ EF+  +  Q L
Sbjct: 98  QFLHKRRRRKFVHQLPDALNMIASSMQSGANVSNAIEFMAEEMEAPIKQEFQLFLREQRL 157

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+  + ++  M + +P +E    +  + +  ++GGNL+E L  LS  LR +  M+ K+ A
Sbjct: 158 GVEFNTALDNMFKRIPEEEFQLVTAGMQISREVGGNLAEVLQRLSATLRKKIEMEGKIDA 217

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ + K    ++  LP  +  ++Y   P  M  ++ +P G  L+ +    +  G + +R 
Sbjct: 218 LTSQGKMQGIVMTLLPVFIGVVLYHMEPSAMGRILTEPMGWALIALVIIMLTSGYLSIRK 277

Query: 182 MINFDV 187
           ++  DV
Sbjct: 278 IVAIDV 283


>gi|119717341|ref|YP_924306.1| type II secretion system protein [Nocardioides sp. JS614]
 gi|119538002|gb|ABL82619.1| type II secretion system protein [Nocardioides sp. JS614]
          Length = 326

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 101/187 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     +R   F    P  L ++  S+ AGL ++ +   +  + +DPV +EFRR +    
Sbjct: 140 LGVRRGRRRKAFSAAVPETLQLMSGSLSAGLSLAQSAETVTREGADPVAAEFRRALVETR 199

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L +++  +       ++++    I +Q Q+GGNL+E L  ++  +R+R+ ++ +V 
Sbjct: 200 LGVPLEDALEGVADRFDSADLAWAVMAIRIQRQVGGNLAELLDTVAETMREREYVRRQVA 259

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E + SAW++GSLP    T +   +  Y+  L  DPRG +LL  AA ++ +G   M 
Sbjct: 260 ALSAEGRLSAWVLGSLPVAFLTYLLLVNREYVMPLFEDPRGIVLLAGAALWLAVGAFWMS 319

Query: 181 LMINFDV 187
            ++  +V
Sbjct: 320 RLVRVEV 326


>gi|218887823|ref|YP_002437144.1| type II secretion system protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758777|gb|ACL09676.1| type II secretion system protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 321

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 106/187 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++     R  +F    P+ALD+I R+++AG   +  + ++  + +DP+  EF++ ++  +
Sbjct: 135 VQRKRNARMGRFQRQLPDALDLIARALKAGHAFNQGMRMVADEFADPIGPEFQKTLDEIN 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+    ++  + R +   ++ FF   +++Q + GGNL+E + N++R++R+R  +  +V+
Sbjct: 195 FGIPADAALYNLTRRVDCPDLKFFVVSVNIQRETGGNLAEIVTNIARLIRERFKLAGRVR 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + +AWI+  LPF +  ++   +P +M+ L   P G+MLL  +   M IG + ++
Sbjct: 255 VLSAEGRLTAWILFVLPFGIGFIINLLNPDFMSALYATPEGNMLLTASLFQMAIGGIALK 314

Query: 181 LMINFDV 187
            +    V
Sbjct: 315 RLTTIRV 321


>gi|254441335|ref|ZP_05054828.1| Bacterial type II secretion system protein F domain [Octadecabacter
           antarcticus 307]
 gi|198251413|gb|EDY75728.1| Bacterial type II secretion system protein F domain [Octadecabacter
           antarcticus 307]
          Length = 322

 Score =  112 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 101/184 (54%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             KKR +   +  P+A++++VRS+R G P S AVA++  +  DP+ +E   + +    G 
Sbjct: 139 KAKKRISMIEEQLPDAVELMVRSLRVGHPFSSAVAIVAKEVPDPLGTEMGVISDEAAYGR 198

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            + ES+ +M   M +Q++ F +  +++Q+  GGNL+E L  LS+++R R  +  +V+A++
Sbjct: 199 DMGESLKQMADRMDMQDMRFLAVAVTIQATAGGNLAEILHGLSQVIRARFKLFRRVKAIT 258

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            EAK S   +   P     ++    P Y + +           V AAF+++ ++VMR ++
Sbjct: 259 AEAKWSGMFLSVFPLGALVMINVLQPTYYDAVKETSVFIPACLVVAAFLVVNVIVMRRLV 318

Query: 184 NFDV 187
           N  V
Sbjct: 319 NIQV 322


>gi|320161468|ref|YP_004174692.1| putative bacterial type II secretion system protein [Anaerolinea
           thermophila UNI-1]
 gi|319995321|dbj|BAJ64092.1| putative bacterial type II secretion system protein [Anaerolinea
           thermophila UNI-1]
          Length = 323

 Score =  112 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/193 (27%), Positives = 102/193 (52%), Gaps = 6/193 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K    KR  KF +  P+ L+++V  +RAG     A+  +  +   P+  EFRRV++   
Sbjct: 131 VKSQQAKRLVKFNEQLPDMLNLMVNGLRAGYSTMQAMEAVSKELPPPICDEFRRVVQEMQ 190

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ + +++  ++R +P  ++    T I+VQ ++GGNL+E L  +S  +R+R  +K +++
Sbjct: 191 LGVPMQQALDNLLRRIPSDDLDLVVTAINVQREVGGNLAEILDTISFTIRERVRIKGEIR 250

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI------NDPRGHMLLGVAAAFMLI 174
            L+ +   S   +  +P  V  ++Y  +  YM          N P G++ L  AA  ++ 
Sbjct: 251 VLTTQVMYSGRFLAMMPIFVMGVLYLLNRPYMMEFFKPENNANLPCGYIALVCAAILIIS 310

Query: 175 GIMVMRLMINFDV 187
           G +VM  + + +V
Sbjct: 311 GYVVMNKIGDIEV 323


>gi|89068022|ref|ZP_01155439.1| type II/IV secretion system protein, TadC subfamily protein
           [Oceanicola granulosus HTCC2516]
 gi|89046261|gb|EAR52318.1| type II/IV secretion system protein, TadC subfamily protein
           [Oceanicola granulosus HTCC2516]
          Length = 322

 Score =  112 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 97/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR +   +  P+A++++VRS+R G P S A+ ++  + +DP+ +E   + +   
Sbjct: 136 VNSKAKKRMSMIEEQLPDAVELMVRSLRVGHPFSSAINIVAKEVADPLGTEMGVIADEAA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + ES+  M   M +Q++ F +  +++Q   GGNL+E L  L++++R R  +  +V+
Sbjct: 196 YGRDMGESLKAMAERMDMQDLRFLAVAVTIQQTSGGNLAEILDGLAKVIRARFRLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EAK S   +   P      +    P Y + ++          V  AF+++ + VMR
Sbjct: 256 AITAEAKWSGMFLSGFPLLALVAINLLQPNYYDDVMETAVFIPACLVVGAFLVVNVFVMR 315

Query: 181 LMINFDV 187
            + N  V
Sbjct: 316 HLTNIKV 322


>gi|187921508|ref|YP_001890540.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
 gi|187719946|gb|ACD21169.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
          Length = 282

 Score =  112 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 97/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  + KKR        P+AL ++  ++RAG     A+  +V +++ P+  EF  ++    
Sbjct: 96  LARMRKKRIGTLEKQLPDALLMMSGALRAGASFPSALEAVVHETTPPISQEFDLLMREIR 155

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ +  ++  + + +P+ +    +  +++  ++GGNL+EAL +++R LR++  M+ K++
Sbjct: 156 LGIDMDIAMRNVEKRIPIPDFLMMTAAVTIAREVGGNLAEALESVARTLREKLQMEGKIK 215

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ + +    ++  LP  +  ++ F  P  M  L  +P G   L V      +G + + 
Sbjct: 216 ALTSQGRMQGIVMTCLPLFLMLVLRFMEPKAMAPLFTEPVGWATLAVIGVMEFLGYVSIS 275

Query: 181 LMINFDV 187
            + N DV
Sbjct: 276 KITNIDV 282


>gi|254486637|ref|ZP_05099842.1| type II secretion system protein [Roseobacter sp. GAI101]
 gi|214043506|gb|EEB84144.1| type II secretion system protein [Roseobacter sp. GAI101]
          Length = 317

 Score =  112 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 71/187 (37%), Positives = 114/187 (60%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     +  A F  D P ALDI  R +RAG PV+D++A++V  +  P+  EF R  +   
Sbjct: 131 LSIAQSRYKATFAADLPEALDIFARGLRAGRPVTDSMAIVVDNAKGPILREFTRCHDEVR 190

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G +L E++ R+   +PL EV+FF+   ++Q++ GGNL E + NL+  LR+R+ ++ K +
Sbjct: 191 MGNTLPETLERLSARLPLPEVTFFAVATALQAETGGNLIETMENLATQLRERRKLRKKAR 250

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS EA+ASA I+ +LPF V+ L+   +  Y+  L +DPRG  +   AA+ + +GI VM 
Sbjct: 251 ALSSEARASAVILAALPFAVAVLIAVLNGDYLEPLYSDPRGRFMSVTAASSIGLGIFVMV 310

Query: 181 LMINFDV 187
            M   +V
Sbjct: 311 RMGKLNV 317


>gi|163751751|ref|ZP_02158969.1| hypothetical Flp pilus assembly protein TadB [Shewanella benthica
           KT99]
 gi|161328403|gb|EDP99562.1| hypothetical Flp pilus assembly protein TadB [Shewanella benthica
           KT99]
          Length = 325

 Score =  112 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 95/187 (50%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR       FP+ LD+I R+++AG   +DA+ +   +   P+  EF+ +    +
Sbjct: 139 LNRDTNKRMDTIEASFPDGLDVIRRALQAGYSFTDAIKLATEELEGPLAKEFKLMFVNIN 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
               +  ++   ++ +P      F++ + VQ + GGNL+E + NL+R++R R   + +V+
Sbjct: 199 YTKDIKLALLGFIQRVPSVSALAFASAVMVQRETGGNLAENIENLTRVIRQRFKFRRRVK 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + SAWI+  LPF +  ++Y  +P Y+  L     G  LL      M+IG   + 
Sbjct: 259 TLSAEGRLSAWILILLPFALFAVIYLQTPAYVGELTGTEAGQKLLMWGGVGMIIGGWWIS 318

Query: 181 LMINFDV 187
            +I  DV
Sbjct: 319 RIIKIDV 325


>gi|121607250|ref|YP_995057.1| type II secretion system protein [Verminephrobacter eiseniae
           EF01-2]
 gi|121551890|gb|ABM56039.1| type II secretion system protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 290

 Score =  112 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 60/186 (32%), Positives = 106/186 (56%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + + K+R  KF +  P+AL ++   +RAGL +S A+A +V +S  P+  EF  ++  Q L
Sbjct: 105 RQMRKRRLRKFEEQLPDALMMLSGGLRAGLGLSSAMAQLVAESGPPLSQEFSLMLREQRL 164

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G++L +++S +   MP Q     ++ + + ++ GG L+E L   S  +R R  M+AK+ A
Sbjct: 165 GVTLEQALSNLNHRMPTQTTVLITSAMRIANETGGGLAETLERTSATIRSRLRMQAKIGA 224

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ + K  AW++G+LP  +  ++    P  M++L +   G   L V A F  +G+ V+R 
Sbjct: 225 LTAQGKLQAWVVGALPIALMLILNEMEPQAMSMLWHTRVGWATLAVIALFEFLGVYVIRK 284

Query: 182 MINFDV 187
           +I  DV
Sbjct: 285 IIAIDV 290


>gi|197117443|ref|YP_002137870.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem]
 gi|197086803|gb|ACH38074.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem]
          Length = 320

 Score =  112 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 106/187 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   ++R+ KF + FP+AL I  RS+RAG     A+ ++  +   PV   F+   E Q 
Sbjct: 134 LRVKTERRSIKFTEQFPDALSIAARSLRAGHSFPTAIQLVGQEVPSPVGPLFKTAYEQQQ 193

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGL + +++ RM   +   ++ FF+T++++ S +GGNLSE L  L+  +R+R  ++ +VQ
Sbjct: 194 LGLRMVDALMRMNERIDSLDLRFFTTLVAINSDIGGNLSELLDKLAMTIRERLKIRRQVQ 253

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             + + + S +++ +LP     +    +P Y   LI +P G  +L  AAA  +IG +V+R
Sbjct: 254 VYTAQGRLSGYVLAALPIATFGIFSVLNPNYERALIREPLGLYVLAGAAAMQIIGFLVIR 313

Query: 181 LMINFDV 187
            ++   +
Sbjct: 314 KIVRIRI 320


>gi|253701803|ref|YP_003022992.1| type II secretion system protein [Geobacter sp. M21]
 gi|251776653|gb|ACT19234.1| type II secretion system protein [Geobacter sp. M21]
          Length = 320

 Score =  112 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 58/187 (31%), Positives = 107/187 (57%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   ++RT +F + FP+AL I  RS+RAG     A+ ++  ++  PV   FR   E Q 
Sbjct: 134 LRVKTERRTTRFTEQFPDALSIAARSLRAGHSFPTAIQLVGQEAPSPVGPLFRTAYEQQQ 193

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGL + +++ RM   +   ++ FF+T++++ S +GGNLSE L  L+  +R+R  ++ +VQ
Sbjct: 194 LGLRMVDALMRMNERIDSLDLRFFTTLVAINSDIGGNLSELLDKLAMTIRERLKIRRQVQ 253

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             + + + S +++ +LP     +     P Y   LIN+P G  +L  AAA  ++G +V+R
Sbjct: 254 VYTAQGRLSGYVLAALPIATFGIFSMLHPNYERALINEPLGLYVLIGAAAMQIVGFLVIR 313

Query: 181 LMINFDV 187
            ++   +
Sbjct: 314 KIVRIRI 320


>gi|255020084|ref|ZP_05292155.1| type II secretion system protein [Acidithiobacillus caldus ATCC
           51756]
 gi|254970446|gb|EET27937.1| type II secretion system protein [Acidithiobacillus caldus ATCC
           51756]
          Length = 284

 Score =  112 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 90/187 (48%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L K+R  +  D  P+ L ++  ++R G  +   +  +    S P+  E   V+  Q 
Sbjct: 98  LLYLKKRRFLRLHDQLPDTLLMMASALRGGANLGQTLEGLAKDMSPPMNQELSLVVREQR 157

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+   E++S +   +  Q+     + + +  ++GGNL++ L  L   +R R  M+ K++
Sbjct: 158 LGVPFEEAVSHLAERVRSQDFDLVVSALRINREVGGNLADTLQRLGETVRRRLMMEQKIR 217

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ + K    ++ +LP  +   +    P     L +  RG  +L +A    ++G   +R
Sbjct: 218 ALTSQGKLQGIVMTALPVLIILALLRIEPAATGALFDTYRGWAVLAIAIVLEILGYWGIR 277

Query: 181 LMINFDV 187
            +++ +V
Sbjct: 278 KIVSIEV 284


>gi|197337544|ref|YP_002157816.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11]
 gi|197314796|gb|ACH64245.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11]
          Length = 307

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 88/182 (48%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L K+   +F + FP+AL+++  +V AG  +  AV  +       V  EF+R+ E   LG
Sbjct: 122 WLRKREKNRFEESFPDALNMMSSAVSAGEGIMQAVVFVGRSLDGKVGKEFKRMGEQLQLG 181

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S      +     P     FF   +    Q GG L E +  L+R++   + ++ K  AL
Sbjct: 182 ESPDTVFRKSCERFPYPSFQFFIITLRTSMQRGGQLKEVMKRLNRLMFGARAIEKKKLAL 241

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ASA I+ ++PF    ++ + SP     ++ +P G  +L        IGI+++ L+
Sbjct: 242 TSEARASAKIVAAIPFIFLFMLQYLSPENYEFVMFNPAGRPILYYVLISESIGILIIWLL 301

Query: 183 IN 184
           + 
Sbjct: 302 MR 303


>gi|295700366|ref|YP_003608259.1| type II secretion system F domain protein [Burkholderia sp.
           CCGE1002]
 gi|295439579|gb|ADG18748.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1002]
          Length = 325

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 108/177 (61%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           +     P+  D++ R++R+G   + A+ ++  + ++P+  EFR V +  + G+S+SE+++
Sbjct: 149 QLERQLPDVCDMLSRALRSGHAFTGAIDMVGAEFTEPMSGEFRIVFDEINYGVSISEALT 208

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            +   +P++++ +F   + +Q + GGNL+E L  ++ ++RDR  +  KV+ LS E + SA
Sbjct: 209 NLATRVPIRDLRYFVIAVVIQRETGGNLAEVLDGITALIRDRFKLFDKVRVLSAEGRMSA 268

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           W++G LPF V   +   +PG++NVL  DP G  ++  A+  ML GI+ MR ++   V
Sbjct: 269 WVLGLLPFGVGGAMMAINPGFLNVLWRDPAGVRMIAAASVAMLFGILWMRHIVKIRV 325


>gi|258405284|ref|YP_003198026.1| Type II secretion system F domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257797511|gb|ACV68448.1| Type II secretion system F domain protein [Desulfohalobium
           retbaense DSM 5692]
          Length = 323

 Score =  111 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 99/176 (56%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           F+   P  LD++ RS++AG   +  + +   +  DP+  EF   ++  + G+ + +++ +
Sbjct: 148 FMAQLPEGLDLLARSLKAGHAFTTGMKLAAEEFGDPLGPEFDVALDEINFGVPVPDALRK 207

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +   +++FF   + +Q + GGNL+E + +++ ++R+R     KV+AL+ E   S W
Sbjct: 208 MTYRVDCPDLNFFVVAVIMQRETGGNLAEIIESIATLIRERFKFFGKVKALAAEGVLSMW 267

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           ++  LPF +  ++ F +P Y+ +L  +  GH+++  A   M+IG   MR ++  DV
Sbjct: 268 VLIGLPFAIVGILTFMNPEYITLLFEETMGHIMIAGALIMMIIGYFFMRNIVKIDV 323


>gi|116626773|ref|YP_828929.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229935|gb|ABJ88644.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 325

 Score =  111 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 103/185 (55%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            +  +R  KF +  P+A+D+  R++RAG  +   +  I  ++SDPV+ EF++++E   LG
Sbjct: 141 RVRGRRLHKFEEMLPDAIDLFTRTMRAGHNIHSGLETIATETSDPVKMEFKKLMEELALG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             +  ++  + + +PL ++ FF T + +Q Q G N+   L NLS ++R+R NM AK++A 
Sbjct: 201 SQVEPALHGLGKRVPLIDLKFFITSLILQRQTGANMVSVLENLSTLVRERLNMAAKMKAH 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + + + SA ++  LP  V    +   P Y+ +L  DP G      A     +GI+V+R +
Sbjct: 261 TAQQRFSAGLLCCLPLVVGIGFWILKPEYVRLLWTDPVGSKFFTYAIISEFVGILVIRKI 320

Query: 183 INFDV 187
            N  V
Sbjct: 321 ANIKV 325


>gi|156741662|ref|YP_001431791.1| type II secretion system protein [Roseiflexus castenholzii DSM
           13941]
 gi|156232990|gb|ABU57773.1| type II secretion system protein [Roseiflexus castenholzii DSM
           13941]
          Length = 327

 Score =  111 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 101/191 (52%), Gaps = 4/191 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +  K+R  KF     + ++++  S+R+G  +  ++ ++  ++ +P  SE+RRV++   
Sbjct: 137 VGYAAKQRVTKFNAQLGDTINMLANSLRSGYSLLQSMELVSREAPEPTASEYRRVVQEVG 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGL   +++  +++ +P +++    T + +Q + GGNL++ L  +   +R+R  +K ++ 
Sbjct: 197 LGLRTEDALDNLLKRVPSEDLDLLITAVKIQMESGGNLAQILDTIGHTIRERIRIKGEIA 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHMLL--GVAAAFMLIGI 176
            L+ + + SA++I  LP  ++  +   +P YM+ +     P  H           ++IG 
Sbjct: 257 VLTAQGRISAYVITGLPIGLAIFITVINPNYMSPMFSFGMPPEHWCCLPVAGIVMIVIGF 316

Query: 177 MVMRLMINFDV 187
             +  +++ +V
Sbjct: 317 FAIMKIVDIEV 327


>gi|86360588|ref|YP_472476.1| putative tadB pilus assembly protein [Rhizobium etli CFN 42]
 gi|86284690|gb|ABC93749.1| putative tadB pilus assembly protein [Rhizobium etli CFN 42]
          Length = 317

 Score =  111 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 57/184 (30%), Positives = 103/184 (55%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +R  KF    P ALD+  RS+ AG P+  A+A++  +  DP+ +EF  + +    G
Sbjct: 133 RARARRMKKFELKLPEALDVANRSLAAGHPLPAAIALVAREMPDPIGTEFGLLSDELTYG 192

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           ++L +++  +   + +++++  +  +SVQ+  GGNL E L NLS+ LR R  +KAKV+A+
Sbjct: 193 VTLDDALVNLADRVGVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRGRTMLKAKVRAI 252

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + +A  +   PF +  ++   SP Y + L +   G  ++ V    M IG +++  M
Sbjct: 253 SSEGRITAIFMSVYPFLLYAMIKALSPTYFDPLWDSGYGTAVVSVLLVVMAIGNVILYKM 312

Query: 183 INFD 186
           +NF+
Sbjct: 313 VNFE 316


>gi|163745842|ref|ZP_02153201.1| type II secretion system protein, putative [Oceanibulbus indolifex
           HEL-45]
 gi|161380587|gb|EDQ04997.1| type II secretion system protein, putative [Oceanibulbus indolifex
           HEL-45]
          Length = 320

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 103/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + H   KR +   +  P+A++++VRS+R G P S+A++++  +  DP+ SEF  + +   
Sbjct: 134 VSHKAGKRMSMIEEQLPDAVELMVRSLRVGHPFSNAISIVSKEIQDPLASEFGVIADEAA 193

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L E++  M   + +Q++ F +  +++Q Q GGNL+E LA L++++R R  +  +V+
Sbjct: 194 YGRDLGEALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFRLFRRVK 253

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EAK S   +   P     ++    P Y + + + P       +   F+++ + VMR
Sbjct: 254 AITAEAKWSGKFLSGFPLAALVVINLGDPHYYDEVRDHPYFIPACFIVGMFLVLNLFVMR 313

Query: 181 LMINFDV 187
           ++ N  V
Sbjct: 314 ILTNIKV 320


>gi|254510017|ref|ZP_05122084.1| type II/IV secretion system protein, TadC subfamily
           [Rhodobacteraceae bacterium KLH11]
 gi|221533728|gb|EEE36716.1| type II/IV secretion system protein, TadC subfamily
           [Rhodobacteraceae bacterium KLH11]
          Length = 322

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 99/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +  KKR A   +  P+A++++VRS+R G P   ++ ++  +  DP+ +EF  + +   
Sbjct: 136 VNNKAKKRMALIEEQLPDAVELMVRSLRVGNPFVSSIQIVANEIEDPLATEFGIISDESA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   + +Q++ F +  +S+Q Q GGNL++ LA L++++R R  +  +V 
Sbjct: 196 YGRDVGEALKDMAERLDMQDLRFLAVAVSIQQQSGGNLADILAGLAKVIRARFRLFRRVN 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EAK S   +   P      +    P Y + ++++P            + + ++VMR
Sbjct: 256 AITAEAKWSGKFLSGFPVACLVFILVNDPNYYDTVLDEPYFIPACFFVGFMLTLNLIVMR 315

Query: 181 LMINFDV 187
           ++ N  V
Sbjct: 316 ILTNIKV 322


>gi|78486065|ref|YP_391990.1| type II secretion system protein [Thiomicrospira crunogena XCL-2]
 gi|78364351|gb|ABB42316.1| Flp (type IV) pilus assembly protein, TadC homolog [Thiomicrospira
           crunogena XCL-2]
          Length = 315

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 94/184 (51%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
              K+R  +    FP  LD IVR++++G  +  A+++I  +   P+  E + V     LG
Sbjct: 131 FKKKQRQNRLRQQFPEMLDAIVRALQSGYGIDGALSMIAEEFRAPLGKEVKEVNRQLTLG 190

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +S+ + +      + + E  FF   + +Q + GG L+  L  LSR++R R+  +AK++ L
Sbjct: 191 ISMRDILRDFQTRIEIPEAQFFVVTLIIQRETGGQLAPILEELSRLMRRREMFQAKLKTL 250

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E++ +A  +G  P       YF  P  M   +NDP G  +L ++   M+ G ++++ M
Sbjct: 251 TAESRFTAIFLGLAPLGYLGYKYFFDPDSMAFFLNDPTGQDILIISLVLMISGAIILKSM 310

Query: 183 INFD 186
           +   
Sbjct: 311 LRIK 314


>gi|126737250|ref|ZP_01752985.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
           sp. SK209-2-6]
 gi|126721835|gb|EBA18538.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
           sp. SK209-2-6]
          Length = 322

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 97/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +      R AK  +  P+A++++VRS+R G P +  V ++  +  DP+ +EF  + +   
Sbjct: 136 VNKKAATRMAKIEEQLPDAVELMVRSLRVGHPFTSTVQIVSDEIEDPLATEFGIIADESA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   + +Q++ F S  +++Q Q GGNL+E LA L+ ++R R  +  KV+
Sbjct: 196 YGRDIGEALKEMAERLNIQDLRFLSVAVTIQQQSGGNLAEVLAGLAGVIRARFRLFRKVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EAK S   + + P      +    P Y + +++ P            + + ++VMR
Sbjct: 256 AITAEAKWSGKFLSAFPLLALIAILVKDPNYYDSVMDHPYFIPACFAVGIMLAVNLLVMR 315

Query: 181 LMINFDV 187
           ++ +  V
Sbjct: 316 ILTDIKV 322


>gi|148655424|ref|YP_001275629.1| type II secretion system protein [Roseiflexus sp. RS-1]
 gi|148567534|gb|ABQ89679.1| type II secretion system protein [Roseiflexus sp. RS-1]
          Length = 327

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 100/191 (52%), Gaps = 4/191 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +  K+R  KF     + ++++  S+R+G  +  ++ ++  ++ +P  SE+RRV++   
Sbjct: 137 VGYAAKQRVTKFNAQLGDTINMLANSLRSGYSLLQSMELVSREAPEPTASEYRRVVQEVG 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGL   +++  +++ +P +++    T + +Q + GGNL++ L  +   +R+R  +K ++ 
Sbjct: 197 LGLRTEDALDNLLKRVPSEDLDLLITAVKIQMESGGNLAQILDTIGHTIRERIRIKGEIA 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHMLL--GVAAAFMLIGI 176
            L+ + + SA++I  LP  ++  +   +P YM  +     P  H           ++IG 
Sbjct: 257 VLTAQGRISAYVITGLPIGLAIFITVINPNYMAPMFSFGMPPEHWCCLPVAGIVMIVIGF 316

Query: 177 MVMRLMINFDV 187
             +  +++ +V
Sbjct: 317 FAIMKIVDIEV 327


>gi|302542848|ref|ZP_07295190.1| putative integral membrane protein [Streptomyces hygroscopicus ATCC
           53653]
 gi|302460466|gb|EFL23559.1| putative integral membrane protein [Streptomyces himastatinicus
           ATCC 53653]
          Length = 312

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 87/187 (46%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  +F++  P    I+  + +AGL +  A+++   +   P   E  +V     
Sbjct: 126 LNWQRQKRIERFINQLPELSRILANATQAGLALRTALSMAADEMEAPAGEELSKVSAKLA 185

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S+ +++  +   +P +E+    T + + ++ GG +  +L NL+  L +RK  + +V+
Sbjct: 186 VGHSVDDALGELAERLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTHTLEERKETRREVR 245

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +   +A+++  +      L+   SPG ++ +     G   +  A A   IG  ++R
Sbjct: 246 TQLSQVTVTAYVVPLMGIGTLLLMNRISPGSLDRMTASIWGQAAVIAAFALYGIGFFLIR 305

Query: 181 LMINFDV 187
            M   DV
Sbjct: 306 RMSKIDV 312


>gi|84516637|ref|ZP_01003996.1| putative Flp pilus assembly protein TadB [Loktanella vestfoldensis
           SKA53]
 gi|84509673|gb|EAQ06131.1| putative Flp pilus assembly protein TadB [Loktanella vestfoldensis
           SKA53]
          Length = 320

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 97/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     +R     +  P+A+D++VRS+R G P S A+ +   +  DP+ +E   + +   
Sbjct: 134 ISRKATQRINLISEQLPDAVDLMVRSLRVGHPFSSAINIAAKEVPDPLGTEIGIIADETA 193

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   +  Q++ F +  +++Q   GGNL+E L  LS+++R R  +  +V+
Sbjct: 194 YGRDMGETLKAMAERLDNQDLRFLAVAVTIQQSSGGNLAEILDGLSKVIRARFRLFRRVK 253

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EAK S  ++ + P      +    P Y + ++  P       V AAF+++ ++VMR
Sbjct: 254 AITAEAKWSGNLLSAFPILALIGINLVQPNYFDDVMESPMFIPACFVVAAFLVLNLIVMR 313

Query: 181 LMINFDV 187
            + N  V
Sbjct: 314 ALTNIKV 320


>gi|309780756|ref|ZP_07675497.1| TadB protein [Ralstonia sp. 5_7_47FAA]
 gi|308920438|gb|EFP66094.1| TadB protein [Ralstonia sp. 5_7_47FAA]
          Length = 325

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 93/185 (50%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           H   +R  K     P A D+I R++RAG  +  A+ +   +   P+ +E   V    + G
Sbjct: 141 HRRTRRLLKLEAQLPEATDLISRALRAGHSLPAALEMAGTELPAPIGAELAIVFSQINFG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +S+S++ + +   +P+ ++ +    I +Q + GGNL+E L N+ +++R R  +  KV+ L
Sbjct: 201 VSMSDAFAGLTDRVPVDDLRYLVIAILIQRESGGNLAEILDNVGKLIRKRLQLLDKVRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E +   WI+  LP  +   +Y  +P  M+ L     G  LL  A     +G++ +R +
Sbjct: 261 SAEGRLGGWILTLLPPVMGLAIYLLNPELMSTLWTTDAGIRLLWFAITMTCLGMLWIRQI 320

Query: 183 INFDV 187
           +   +
Sbjct: 321 VRIHI 325


>gi|260463898|ref|ZP_05812094.1| type II secretion system protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259030273|gb|EEW31553.1| type II secretion system protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 321

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 106/185 (57%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + + K+R  +F    P AL++I R ++AG PV  A+A++  +  DP+ +EF  + +    
Sbjct: 136 RFMRKRRLKRFGMQLPEALELITRGLKAGHPVPVAIAMVSREMPDPIGTEFGVIADEVTY 195

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L  +++ +   +  +++  F T +S+QS  GGNL E L  L+  +R+R  ++ KV+A
Sbjct: 196 GSDLVSALNSLFDRVGHEDLPLFMTAVSIQSSSGGNLREILDGLALTIRERGKLRRKVRA 255

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           +S E + SA+I+ ++P  +   +    PG+   + ++P+   L+G +  ++++G ++M  
Sbjct: 256 ISTEGRLSAYILTAIPALLFAGIMAMMPGFYRDVWDEPKTWYLIGGSVTWLMLGNLMMFK 315

Query: 182 MINFD 186
           M NF 
Sbjct: 316 MSNFR 320


>gi|241662161|ref|YP_002980521.1| type II secretion system protein [Ralstonia pickettii 12D]
 gi|240864188|gb|ACS61849.1| type II secretion system protein [Ralstonia pickettii 12D]
          Length = 325

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 93/185 (50%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           H   +R  K     P A D+I R++RAG  +  A+ +   +   P+ +E   V    + G
Sbjct: 141 HRRTRRLLKLEAQLPEATDLISRALRAGHSLPAALEMAGTELPAPIGAELAIVFSQINFG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +S+S++ + +   +P+ ++ +    I +Q + GGNL+E L N+ +++R R  +  KV+ L
Sbjct: 201 VSMSDAFAGLTDRVPVDDLRYLVIAILIQRESGGNLAEILDNVGKLIRKRLQLLDKVRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E +   WI+  LP  +   +Y  +P  M+ L     G  LL  A     +G++ +R +
Sbjct: 261 SAEGRLGGWILTLLPPVMGLAIYLLNPELMSTLWTTDAGIRLLWFAITMTCLGMLWIRQI 320

Query: 183 INFDV 187
           +   +
Sbjct: 321 VRIHI 325


>gi|296131924|ref|YP_003639171.1| Type II secretion system F domain protein [Thermincola sp. JR]
 gi|296030502|gb|ADG81270.1| Type II secretion system F domain protein [Thermincola potens JR]
          Length = 313

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 86/187 (45%), Gaps = 1/187 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   +K         P+   ++  SV+AGL +   + ++  +   P ++ F  +     
Sbjct: 128 LKVKQQKLVDALNRQLPDICRLLSSSVKAGLNIQQGIELVAREQKPPAQTVFTELAHQLQ 187

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +L  + S ++  +P +E+    + I VQ + GGN++  L  +S+ L +R  +  +++
Sbjct: 188 LGNTLENAFSHIMEELPSKELRLMGSTIIVQRKAGGNMARVLEEMSQTLENRDRVNQELK 247

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             + E K  A I+  +P     ++  + PG+   L   P G +L  +      +G +++ 
Sbjct: 248 GKTAETKFVAMILPFMPIVAGLVLNISFPGFFRPLF-TPLGLILAALVIGIETVGFILIA 306

Query: 181 LMINFDV 187
            + +  V
Sbjct: 307 KITDIRV 313


>gi|294012436|ref|YP_003545896.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
 gi|292675766|dbj|BAI97284.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
          Length = 332

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 69/195 (35%), Positives = 112/195 (57%), Gaps = 8/195 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  LIK R  KF   FP+AL+++ R +R+GLP+++ + V+  +   PV  EF+ + E   
Sbjct: 138 VSRLIKGRVLKFNAKFPDALELLTRGLRSGLPIAETLNVVSNEVPGPVGEEFKLITERIK 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G ++ +++      +   E  FF   +++Q + GGNL+E L+NL+ +LR R  MK K++
Sbjct: 198 IGKTMDQALQETADRLGTPEFQFFVISLAIQRETGGNLAETLSNLATVLRQRAQMKLKIR 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRGHMLL-------GVAAAFM 172
           A+S E+KASA+IIG LPF V  L+ + +  YM+     DP G   L            +M
Sbjct: 258 AMSSESKASAYIIGVLPFTVFGLICYINYDYMSPFFTPDPAGLFGLSTMQVIGIGGMCWM 317

Query: 173 LIGIMVMRLMINFDV 187
            IG  +M  MINF++
Sbjct: 318 SIGAFIMAQMINFEI 332


>gi|163733538|ref|ZP_02140981.1| type II secretion system protein, putative [Roseobacter litoralis
           Och 149]
 gi|161393326|gb|EDQ17652.1| type II secretion system protein, putative [Roseobacter litoralis
           Och 149]
          Length = 320

 Score =  110 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 97/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR A   +  P+A++++VRS+R G P S AV ++  +  DP+ SE   + +   
Sbjct: 134 VSSKANKRLAMIEEQLPDAVELMVRSLRVGHPFSSAVQIVSKEVQDPLASEMGVIADESA 193

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + +++  M   + +Q++ F +  +++Q   GGNL+E LA L++++R R  +  +V+
Sbjct: 194 YGRDVGDALKEMAERLDMQDLRFLAVAVNIQQTSGGNLAEILAGLAKVIRARFRLFRRVK 253

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EAK S   + + P     ++    P Y + + +         +   F+ + + VMR
Sbjct: 254 AITAEAKWSGKFLSAFPVVALIVINVGDPNYYDAVRDHAYFIPACFLVGVFLALNLFVMR 313

Query: 181 LMINFDV 187
           ++ +  V
Sbjct: 314 ILTDIKV 320


>gi|319943384|ref|ZP_08017666.1| type II secretion system protein F domain protein [Lautropia
           mirabilis ATCC 51599]
 gi|319743199|gb|EFV95604.1| type II secretion system protein F domain protein [Lautropia
           mirabilis ATCC 51599]
          Length = 291

 Score =  110 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 98/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++HL  +R   F    P+A+ +I  +VRAG  ++ A+  +  +   P   EF  ++    
Sbjct: 105 IRHLGAQRRKLFARQLPDAMMLIAGAVRAGASMTLALRQMASELPAPGGQEFELMLRELR 164

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG++L +++  + R M   ++  F   + + ++ GGNL+E L  L+  +R +  ++ K+ 
Sbjct: 165 LGVTLDDALLNLERRMGCDDLRLFGAAVRIANESGGNLAETLERLADTIRKKMALEDKIM 224

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ + +   W++  LP  V   ++   P  M  L++  +G ++  V A   ++G++ +R
Sbjct: 225 ALTAQGRMQGWVMVLLPLGVGAALFAIEPTAMAPLLHSWQGWIVCSVVAVLEIVGLLFIR 284

Query: 181 LMINFDV 187
            ++  D+
Sbjct: 285 RIMAIDI 291


>gi|239979682|ref|ZP_04702206.1| hypothetical protein SalbJ_09607 [Streptomyces albus J1074]
 gi|291451547|ref|ZP_06590937.1| conserved hypothetical protein [Streptomyces albus J1074]
 gi|291354496|gb|EFE81398.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 311

 Score =  110 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 88/187 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR   F++  P+   ++  +  AGL +  A+A+   +   P   E  RV +   
Sbjct: 125 LNWQRQKRIEAFINQLPDVARLLANATAAGLALRTALAMAAEELEAPAGEELCRVADQLA 184

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S+  ++  +   +P +E+    T + + +Q GG +  +L NL+  L +RK  + +V+
Sbjct: 185 LGRSVDAALGELAERLPSRELVVLVTTLVLSNQAGGTVVSSLRNLTATLEERKETRREVR 244

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +  E  A+A  + +L      L+   + G +  +     G +L+ +A     +G +V+R
Sbjct: 245 TMLSEVHATALTVPALGLGSLLLINSQNEGALARVTGSALGQILILIALGLYAVGFLVIR 304

Query: 181 LMINFDV 187
            +   +V
Sbjct: 305 RLGKIEV 311


>gi|85859133|ref|YP_461335.1| flp pilus assembly protein [Syntrophus aciditrophicus SB]
 gi|85722224|gb|ABC77167.1| flp pilus assembly protein [Syntrophus aciditrophicus SB]
          Length = 327

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 100/186 (53%), Gaps = 1/186 (0%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
                R  KF    P+ALD++ R+++AG      + ++  +  DP+  EF +V+E  + G
Sbjct: 142 MKKNSRMKKFDAQLPDALDLMARALKAGHAFPGGIQMVAKEFDDPIGIEFAKVVEETNFG 201

Query: 63  LSLSESISRMVRYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           + + E++  +        ++ FF+  + +Q + GGNL+E L +++RI+R+R  +   ++ 
Sbjct: 202 VGVEEALRNLANRFDSSSDLKFFAIAVMIQRESGGNLAEILESIARIIRERFKLMGTIRT 261

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           LS E + SA I+ ++PF V+  +   +P Y+ VL  DP G  L   +   M +GI +M+ 
Sbjct: 262 LSAEGRLSAIILVAIPFFVAFALSIMNPQYITVLATDPIGKALAFTSLVMMAVGIYIMKK 321

Query: 182 MINFDV 187
            I   V
Sbjct: 322 TIQIKV 327


>gi|108759913|ref|YP_632817.1| type II secretion system protein F domain [Myxococcus xanthus DK
           1622]
 gi|108463793|gb|ABF88978.1| type II secretion system protein F domain protein [Myxococcus
           xanthus DK 1622]
          Length = 281

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 100/187 (53%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +KH  K+R  KF     +AL  +  + +AGL    A+  +  ++  P+  EF   ++   
Sbjct: 95  VKHYRKRRIKKFNVQLVDALQAMANAFKAGLTFPQAIEHVAREAMPPLSQEFGLFVKEVK 154

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L E++  M R +   ++       ++  QLGGN++E    +S ++R+R  ++ K+ 
Sbjct: 155 LGVPLEEALINMGRRVGSDDLELVVVSTNIARQLGGNMAEMFETISTVIRERFRLEGKID 214

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ + K   WI+ ++P  +  ++ +  P  M  +++   G +L+ + A   ++GI+++R
Sbjct: 215 ALTSQGKLQGWIVAAMPGVLGMVLNYMRPDLMEPMMDHIFGWILVIIIAIMEVMGILIIR 274

Query: 181 LMINFDV 187
            ++N D+
Sbjct: 275 RIVNIDI 281


>gi|327189774|gb|EGE56918.1| putative tadB pilus assembly protein [Rhizobium etli CNPAF512]
          Length = 317

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 56/184 (30%), Positives = 103/184 (55%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +R   F    P ALD+  RS+ AG P+  A+A++  +  DP+ +EF  + +    G
Sbjct: 133 RARARRMKAFELKLPEALDVATRSLAAGHPLPAAIALVGREMPDPIGTEFGLLTDELTYG 192

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           ++L +++  +   + +++++  +  +SVQ+  GGNL E L NLS+ LRDR  ++AKV+A+
Sbjct: 193 VTLDDALVNLADRVGVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRDRTMLRAKVRAI 252

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + +A  +   PF +  ++   SP Y + + +   G  L+    A M IG +++  M
Sbjct: 253 SSEGRITAIFMSIYPFLLYAMIRALSPTYFDPVWDSGHGTTLVCALLAVMAIGNVILYKM 312

Query: 183 INFD 186
           +NF+
Sbjct: 313 VNFE 316


>gi|51245381|ref|YP_065265.1| TadB [Desulfotalea psychrophila LSv54]
 gi|50876418|emb|CAG36258.1| related to TadB [Desulfotalea psychrophila LSv54]
          Length = 317

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 100/184 (54%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             ++R   F + FP+ALD++  +++AG  +  ++ ++  +   P+  EF  V+E  + G 
Sbjct: 134 KRRQRRINFEEHFPDALDLMGYAMKAGHSIMASLKMVSEEMPAPINEEFAIVVEEINFGK 193

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S+  ++    + +   E+ +F T + VQ + GGNL E L  +S I+R +   + +V+ALS
Sbjct: 194 SIDSTLRNFAKRVDSTELRYFVTSVIVQRETGGNLVEILEKISAIIRKKFRFRERVRALS 253

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E K SA I+ +LPFC++  V   +  Y+ +LI DP G  L+  A   M  G  ++   +
Sbjct: 254 AEGKLSAIILVALPFCIALAVSVLNKEYVAILITDPIGPYLITGAVIMMSFGSFIIYKFV 313

Query: 184 NFDV 187
             D+
Sbjct: 314 QLDM 317


>gi|254487450|ref|ZP_05100655.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
           sp. GAI101]
 gi|214044319|gb|EEB84957.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
           sp. GAI101]
          Length = 320

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 99/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR +   +  P+A++++VRS+R G P ++A+A++  +  DP+ SEF  + +   
Sbjct: 134 ISSKAKKRMSMIEEQLPDAVELMVRSLRVGHPFTNAIAIVSKEIQDPLASEFGIISDEAA 193

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   + +Q++ F +  +++Q Q GGNL+E LA L++++R R  +  +V 
Sbjct: 194 YGRDIGEALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFKLFRRVN 253

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EAK S   + + P     ++    P Y + ++              F+   ++VMR
Sbjct: 254 AITAEAKWSGKFLSAFPIVALIVIKLGDPHYYDEVMTHELFIPGCIAVILFLSANLLVMR 313

Query: 181 LMINFDV 187
            + +  V
Sbjct: 314 KLTDIKV 320


>gi|218663020|ref|ZP_03518950.1| putative tadB pilus assembly protein [Rhizobium etli IE4771]
          Length = 317

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 103/184 (55%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +R  KF    P ALD+  RS+ AG P+  A++++  +  DP+ +EF  + +    G
Sbjct: 133 RARARRMKKFELKLPEALDVANRSLAAGHPLPAAISLVGREMPDPIGTEFGLLSDELTYG 192

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           ++L +++  +   + ++++   +  +SVQ+  GGNL E L NLS+ LRDR  ++AKV+A+
Sbjct: 193 VTLDDALVNLADRVGVEDLDLLAISLSVQAGTGGNLVEILQNLSKTLRDRTMLRAKVRAI 252

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + +A  +   PF +  ++   SP Y + + +   G  ++    A M +G +++  M
Sbjct: 253 SSEGRITAIFMSVYPFLLYAMIKALSPTYFDPVWDSGHGTTVVCALLAVMAVGNVILYKM 312

Query: 183 INFD 186
           +NF+
Sbjct: 313 VNFE 316


>gi|283769335|ref|ZP_06342234.1| type II secretion system F domain protein [Bulleidia extructa
           W1219]
 gi|283103992|gb|EFC05376.1| type II secretion system F domain protein [Bulleidia extructa
           W1219]
          Length = 294

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 93/183 (50%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             KKR A F    P AL II   +R+G     A+A +     +P+  E +RVI   + G 
Sbjct: 111 AKKKRLALFNKQLPEALVIIGNCLRSGFTFRHALARVSEDLPNPISEELKRVIREVNYGR 170

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L ES+  +       E+   ++ +++Q + GGNL+E +  ++  + DR N++ +++ L+
Sbjct: 171 KLEESLGELASRTNSAELEMINSAVTIQQRSGGNLAEIVEKVTETINDRINIRNQIRVLT 230

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            + + S  +IG LP  +  ++ + SP YMN       G ++L V+      G ++++ ++
Sbjct: 231 TQGRYSGMLIGLLPVFLLIILTWISPNYMNSFFKTSIGKVMLVVSVILETTGFLLIQKIV 290

Query: 184 NFD 186
           N  
Sbjct: 291 NIK 293


>gi|149915638|ref|ZP_01904164.1| type II secretion system protein, putative [Roseobacter sp.
           AzwK-3b]
 gi|149810530|gb|EDM70373.1| type II secretion system protein, putative [Roseobacter sp.
           AzwK-3b]
          Length = 322

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 98/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR A   +  P+A++++VRS+R G P + A++++  + +DP+ +EF  + +   
Sbjct: 136 ITIKANKRMAMLEEQLPDAIELMVRSLRVGHPFTSAISIVASEMADPLATEFGIIADEAA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   + +Q++ F +  +++Q Q GGNL+E L  L++++R R  +  +V+
Sbjct: 196 YGRDIGEALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILDGLAKVIRARFRLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EAK S   +   P      +    P Y +  +  P       +   F++  + VMR
Sbjct: 256 AITAEAKWSGKFLSGFPVLALIGIQIIDPNYYDKAMLHPYFIPACLIVGTFLVANLFVMR 315

Query: 181 LMINFDV 187
            ++N  V
Sbjct: 316 ALVNIKV 322


>gi|86159246|ref|YP_466031.1| type II secretion system protein [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85775757|gb|ABC82594.1| type II secretion system protein [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 320

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 61/184 (33%), Positives = 102/184 (55%), Gaps = 1/184 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
              KR+AK  +  P ALD++ RS+RAG  V+ A  V+  +  +P+  EF R  E Q LGL
Sbjct: 136 ARAKRSAKLSEQLPEALDMMARSLRAGHAVTSAFQVVASEMPEPICVEFARAYEEQRLGL 195

Query: 64  SLSESISRMVRYMP-LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +L  ++ +M    P   ++  F+    +Q + GGNL+E L  +   +R R     K++AL
Sbjct: 196 TLERAVVQMSERCPGNGDMKIFAVSAVIQRETGGNLAEILDQIGETIRQRYRFYGKLRAL 255

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E +ASA I+G+LPF V+  +   +P Y+ VL    RG M++  A+   ++G++ +  +
Sbjct: 256 TGEGRASAVILGALPFAVAVALSILNPEYLMVLPGTARGQMIILGASVSWVVGLLWLYRL 315

Query: 183 INFD 186
              D
Sbjct: 316 TQVD 319


>gi|319951072|ref|ZP_08024925.1| type II secretion system integral membrane subunit [Dietzia
           cinnamea P4]
 gi|319435232|gb|EFV90499.1| type II secretion system integral membrane subunit [Dietzia
           cinnamea P4]
          Length = 314

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 92/173 (53%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           D   ++L ++  S+RAG  +  A+A +  ++  P   EF R+I    +G  L+ ++    
Sbjct: 141 DQLDDSLQLMASSLRAGHSLLQALASVAREAEQPTSEEFARIINETRVGRELAPALEETA 200

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
             M  Q+  + +  I++  ++GGNL+E L  +   +R+R  ++ +VQAL+ E K SA+++
Sbjct: 201 NRMGSQDFVWVTQAIAINREVGGNLAEVLDGVGHTIRERNQIRRQVQALAAEGKLSAYVL 260

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
            +LPF +   ++ ++P Y+ VL   P G  ++      + IG + +  ++   
Sbjct: 261 MALPFGIGGFLFVSNPSYIGVLTQSPLGWGMIAAGVVMLTIGGIWLSKVVRIR 313


>gi|323341959|ref|ZP_08082192.1| flp pilus assembly protein [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464384|gb|EFY09577.1| flp pilus assembly protein [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 311

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 102/187 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   K+R  KF     +AL I+  S+RAG     A+A I     DP+  EF +V     
Sbjct: 125 IKIKRKQRIGKFSQQLGDALLILSNSLRAGFTFEQALASIAKDLPDPIGPEFLKVCREVE 184

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG ++ +S++ +   M  +E+   +T +S+Q Q+GGNL++ L N+   +R+R  ++  ++
Sbjct: 185 LGENIEKSLAAVSTRMESEEMKLMNTAVSIQRQVGGNLADVLDNIGEAIRERITIQKNIK 244

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ +   SA +I  LP  V  L+   +  YM  +   P G+ LLGV+A   ++G  +++
Sbjct: 245 ALTAQGDVSAKVIAGLPVVVLVLISMVNKEYMEPVFTTPFGYALLGVSATLEIMGYAMIK 304

Query: 181 LMINFDV 187
            + N ++
Sbjct: 305 KITNIEM 311


>gi|309792340|ref|ZP_07686810.1| type II secretion system protein [Oscillochloris trichoides DG6]
 gi|308225655|gb|EFO79413.1| type II secretion system protein [Oscillochloris trichoides DG6]
          Length = 325

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 98/191 (51%), Gaps = 4/191 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR   F D   + + ++  ++R G      + ++   +  P+  EFRRV++   
Sbjct: 135 LNMRAKKRIKSFNDQLGDTITMMANALRGGFSFLQTLDMVARDAPAPMSGEFRRVVQEVG 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +  E++  ++R MP +++    T +++Q ++GGNL++ L  +   +R+R  +K ++Q
Sbjct: 195 LGRTTEEALQSLLRRMPSEDLDLLITAVNIQMEVGGNLAQILDTIGHTIRERVRIKGEIQ 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLL-GVAAAFMLIGI 176
            L+ + + S W+I  LP  ++  +   +P YM  + +    P+    L   + A + IG 
Sbjct: 255 TLTAQGRISGWVITGLPIGLAIFITMINPEYMMPIFSFGMPPKHWCCLPVTSLAMIAIGY 314

Query: 177 MVMRLMINFDV 187
             +  +++ +V
Sbjct: 315 FAIMKIMDIEV 325


>gi|147677787|ref|YP_001212002.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum
           SI]
 gi|146273884|dbj|BAF59633.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum
           SI]
          Length = 323

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 96/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++    KR  KF     +AL I+  S+R+G     A+ ++  +   P+  EF   ++  +
Sbjct: 137 LRLAKTKRLVKFNGQIGDALIIMANSLRSGFSFLQAMDMVRKEMPGPIAKEFGAALQEMN 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G    E++  MV  +  +++    T + +Q Q+GGNL+E L  ++  +R+R  +K +++
Sbjct: 197 WGTPTEEALLNMVSRVNSEDLELVVTAVLIQRQVGGNLAEVLDKIAFTIRERVRIKREIK 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L+ + + S  IIG LP  +S  ++  +  YM VL     G  ++  A  F ++G+ +++
Sbjct: 257 TLTAQGRISGLIIGLLPIFLSIAIFLLNHAYMKVLFTSKAGLTMVSCAVLFQVLGLALIK 316

Query: 181 LMINFDV 187
            +I   V
Sbjct: 317 KIIKIPV 323


>gi|260574612|ref|ZP_05842615.1| type II secretion system protein [Rhodobacter sp. SW2]
 gi|259023029|gb|EEW26322.1| type II secretion system protein [Rhodobacter sp. SW2]
          Length = 322

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 100/187 (53%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR A   +  P+A++++VRS+R G P + A+A++  + +DP+ +EF  + +   
Sbjct: 136 VNGKAKKRIALMEEQLPDAVELMVRSLRVGHPFASAIAIVSKEVADPLGTEFGIIGDEAA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  ++ES+      M  Q++ F S  +++Q Q GGNL+E L  L++++R R  +  +V+
Sbjct: 196 YGRDVTESLKAFAERMDNQDLRFLSVAVTIQQQSGGNLAEILEGLAKVIRARFKLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EAK S   + + P     ++    P Y + +           V   F+ I ++ M+
Sbjct: 256 AITAEAKWSGMFLSAFPIGALVMILMLKPDYFDKVKETSAFVPAALVVGVFLTINVIFMK 315

Query: 181 LMINFDV 187
           +M+N  V
Sbjct: 316 MMVNIKV 322


>gi|110679392|ref|YP_682399.1| type II secretion system protein, putative [Roseobacter
           denitrificans OCh 114]
 gi|109455508|gb|ABG31713.1| type II secretion system protein, putative [Roseobacter
           denitrificans OCh 114]
          Length = 320

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 97/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR A   +  P+A++++VRS+R G P S AV ++  +  DP+ SE   + +   
Sbjct: 134 VSSKANKRLAMIEEQLPDAVELMVRSLRVGHPFSSAVQIVSKEVQDPLASEMGVIADESA 193

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + +++  M   + +Q++ F +  +++Q   GGNL+E LA L++++R R  +  +V+
Sbjct: 194 YGRDVGDALKEMAERLDMQDLRFLAVAVNIQQTSGGNLAEILAGLAKVIRARFRLFRRVK 253

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EAK S   + + P     ++    P Y + + +         +   F+ + + VMR
Sbjct: 254 AITAEAKWSGKFLSAFPVVALIVINVGDPNYYDAVRDHAYFIPACFLVGIFLALNLFVMR 313

Query: 181 LMINFDV 187
           ++ +  V
Sbjct: 314 VLTDIKV 320


>gi|302558696|ref|ZP_07311038.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
 gi|302476314|gb|EFL39407.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
          Length = 314

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 85/187 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  +F++  P    I+  + +AGL +  AV +   +   P   E  +V     
Sbjct: 128 LNWQRQKRIERFINQLPELARILANATQAGLALRTAVGMAAEEMEAPAGEELAKVANQLA 187

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S+ +++  +   +P +E+    T + + ++ GG +  AL NL+  L +RK  + +V+
Sbjct: 188 VGASMDDALGELADRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVR 247

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +   +++ +  L      L+     G ++ +   P G   + +A     +G +++R
Sbjct: 248 TQLSQVSMTSYAVPVLGVGSLFLMNGVKDGALDRMTGSPAGQAAVIIAFGLYAVGFVLIR 307

Query: 181 LMINFDV 187
            +   DV
Sbjct: 308 RLSRIDV 314


>gi|300704934|ref|YP_003746537.1| tad secretion system, pilus assembly protein [Ralstonia
           solanacearum CFBP2957]
 gi|299072598|emb|CBJ43948.1| Tad secretion system, pilus assembly protein [Ralstonia
           solanacearum CFBP2957]
          Length = 325

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 94/175 (53%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
               P A D+I R++RAG  +  A+ +   +   PV  E   V    + G+S++++++ +
Sbjct: 151 EAQLPEATDLISRALRAGHSLPSALEMAGDELPQPVGPELAIVFGQINYGVSMNDALAGL 210

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           +  +P+ ++ +    I +Q + GGNL+E L N+  ++R R  +  KV+ LS E +   WI
Sbjct: 211 IDRVPVDDLRYLVIAILIQRESGGNLAEILDNVGTLIRKRLQLLDKVRVLSAEGRLGGWI 270

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           + +LP  ++ +VY  +P  M+ L  DP G  ++  A A    G++ +R ++   +
Sbjct: 271 LTALPPAMAVVVYQLNPELMSTLWKDPVGIHMMWYAIAMTCFGVLWIRHIVRIHI 325


>gi|126733577|ref|ZP_01749324.1| Putative Flp pilus assembly protein TadB [Roseobacter sp. CCS2]
 gi|126716443|gb|EBA13307.1| Putative Flp pilus assembly protein TadB [Roseobacter sp. CCS2]
          Length = 321

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 99/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR     +  P A++++VRS+R G P S A+A++  +  DP+ +E   + +   
Sbjct: 135 VNGKAKKRMNMLAEQLPEAVELMVRSLRVGHPFSSAIAIVAREVPDPLGTEIGMISDEAA 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   +  Q++ F +  +++Q   GGNL+E L  L++++R R  +  +V 
Sbjct: 195 YGRDMGETLKSMAERLDNQDMRFLAVAVTIQQTSGGNLAEILDGLAKVIRARFRLFRRVA 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EAK S  ++ + P      +    P Y + ++  P     + +  AF+++ ++VMR
Sbjct: 255 AITAEAKWSGNLLSAFPIFALMGINLVKPDYYDDVMESPLFIPAVLIVVAFLVVNLLVMR 314

Query: 181 LMINFDV 187
            +++  V
Sbjct: 315 ALVDIKV 321


>gi|297157607|gb|ADI07319.1| putative integral membrane protein [Streptomyces bingchenggensis
           BCW-1]
          Length = 312

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 88/187 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  KF+   P    I+  + +AGL +  A+ +   +   P   E  +V +   
Sbjct: 126 LNWQRQKRIEKFISQLPELSRILANATQAGLALRTALGMAADEMEAPAGEELAKVADKLA 185

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S+ +++  +   +P +E+    T + + ++ GG +  +L NL++ L +RK  + +V+
Sbjct: 186 VGHSIDDALGELAERLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTQTLEERKETRREVR 245

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +   +A+++  +      L+   + G ++ + +   G   + VA A   +G  ++R
Sbjct: 246 TQLSQVTVTAYVVPLMGIGTLLLMNRIATGSLDRMTSSFWGQAAVVVAFALYGVGFFLIR 305

Query: 181 LMINFDV 187
            M   DV
Sbjct: 306 RMSKIDV 312


>gi|114797844|ref|YP_759873.1| putative Flp pilus assembly protein TadB [Hyphomonas neptunium ATCC
           15444]
 gi|114738018|gb|ABI76143.1| putative Flp pilus assembly protein TadB [Hyphomonas neptunium ATCC
           15444]
          Length = 316

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/187 (33%), Positives = 103/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++HL   R  K     P+AL I+ RS+ AG PV+ AV+++  +  DP+ +EF    +   
Sbjct: 130 IRHLAGARAKKLAAQLPDALQIVCRSLEAGHPVATAVSLVAREMPDPIGTEFGMTADEVS 189

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+SL+ ++ RM       +V  F+  + +Q + GGNL+E L + +  +R+R+ M+ KV+
Sbjct: 190 YGMSLTNAVQRMAERAGDPDVELFAATVRLQEKTGGNLTELLKSNTNTIRERQTMRLKVR 249

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A S E + SA I+ S PF V T ++   P +   +I++P           +M IG +VM 
Sbjct: 250 AASSEGRVSAMILTSAPFIVMTAIHLLRPEFYGSVIHEPLIQYSFAGLLVWMGIGNLVMN 309

Query: 181 LMINFDV 187
            MINF +
Sbjct: 310 RMINFKM 316


>gi|290957845|ref|YP_003489027.1| type II secretion system F protein [Streptomyces scabiei 87.22]
 gi|260647371|emb|CBG70476.1| putative type II secretion system F protein [Streptomyces scabiei
           87.22]
          Length = 341

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 91/187 (48%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR   F++  P+   ++  +  AGL +  A+A+   +   P   E  RV +   
Sbjct: 155 LNWQRQKRIEAFINQLPDVARLLANATAAGLALRTALAMAAEELEAPAGEELARVADQLA 214

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S+ +++  +   +P +E+    T + + ++ GG +  +L NL++ L DRK  + +V+
Sbjct: 215 LGRSVDDALGELAERLPSRELIVLVTTLVLSNKAGGTVVSSLRNLTQTLEDRKETRREVR 274

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +  E  A+A+ +  L      L+  ++ G +  +   P G +L+ ++     +G  V+R
Sbjct: 275 TMLSEVNATAFTVPLLGLGSLLLINSSNDGALARVTGSPLGQLLVLISIGLYTVGFFVIR 334

Query: 181 LMINFDV 187
            +   +V
Sbjct: 335 RLGKIEV 341


>gi|254420696|ref|ZP_05034420.1| Bacterial type II secretion system protein F domain [Brevundimonas
           sp. BAL3]
 gi|196186873|gb|EDX81849.1| Bacterial type II secretion system protein F domain [Brevundimonas
           sp. BAL3]
          Length = 326

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 88/187 (47%), Positives = 127/187 (67%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K R  KF  +FPNA+D+IVR +++GLPV +   +I  +S  P+   F++++E   
Sbjct: 140 VGFLAKARMKKFSLEFPNAVDVIVRGIKSGLPVHECFKIIARESPAPLGPAFKKLVEALG 199

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G++L +++ +M   MP  E+ FF+ VI++Q + GGNL+EAL+NLS +LR R+ M+ KV+
Sbjct: 200 VGMTLEQALDKMFEQMPTPELRFFTIVIAIQQKTGGNLAEALSNLSTVLRARRMMREKVK 259

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS EA ASA II SLP  V T+V FTSPGYM  L  D RG+ LL +A A M  GI VM+
Sbjct: 260 ALSSEALASAGIIASLPPAVMTMVMFTSPGYMMALFTDIRGNALLLLAGALMGTGIFVMK 319

Query: 181 LMINFDV 187
            MI+F +
Sbjct: 320 RMISFKI 326


>gi|87308907|ref|ZP_01091045.1| putative membrane protein [Blastopirellula marina DSM 3645]
 gi|87288250|gb|EAQ80146.1| putative membrane protein [Blastopirellula marina DSM 3645]
          Length = 310

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/182 (29%), Positives = 90/182 (49%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            +  +R   F D FP+AL++I R+VRAG     A+ ++   S DP+  EFRR  +   +G
Sbjct: 126 WIKNRRLRAFQDQFPSALELIARAVRAGESFEQAIQLVGESSEDPIGVEFRRCAKQLDVG 185

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           LS  +++  M   + L +V  F+T ISV  + GG L E L  L+ ++RDR     +++++
Sbjct: 186 LSAPKAMEGMADRVELMDVKIFATTISVHRESGGALPETLDRLAAVIRDRMAYHRQLRSI 245

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           +   + SA II  L   +        P Y +     P G  LL  A     +G+  +  +
Sbjct: 246 TSSGRMSATIIALLAPLLLVFFLLFQPEYFSEFFAHPWGRYLLLFALVSEALGLYFVYRL 305

Query: 183 IN 184
           + 
Sbjct: 306 VR 307


>gi|294102186|ref|YP_003554044.1| Type II secretion system F domain protein [Aminobacterium
           colombiense DSM 12261]
 gi|293617166|gb|ADE57320.1| Type II secretion system F domain protein [Aminobacterium
           colombiense DSM 12261]
          Length = 309

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 103/183 (56%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +   ++R  +F    P  LD++   +RAG     ++     Q   P+    ++V+    L
Sbjct: 124 RVRKQRRLQRFERQIPPMLDMVSSGLRAGFSFLQSLQNAGAQIEAPLGDTLQQVVAEISL 183

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           GL L + ++R V  +   ++    T I +Q ++GGNL++ L N++R++RDR+++ A+++A
Sbjct: 184 GLDLEDVLNRWVERVGSLDLELAVTSILIQREIGGNLAKILENIARVMRDRQDVAAQMKA 243

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ + +    I+  LP  ++ ++   SPGY++ L +  +G ++LG A  F  IGI+V++ 
Sbjct: 244 LTSQGRLEGLIVSLLPVAMAVIINLLSPGYLSPLFSTQKGQVMLGTAIFFAFIGILVIQR 303

Query: 182 MIN 184
           ++ 
Sbjct: 304 IVR 306


>gi|170725111|ref|YP_001759137.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
 gi|169810458|gb|ACA85042.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
          Length = 283

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 97/186 (52%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K L K+R  KF+   P+AL++I  S+++G  VS A+  +  +   P++ EF+     Q L
Sbjct: 98  KFLHKRRRRKFVHQLPDALNMIASSMQSGANVSTAIEFMSEEMQAPIKQEFQLFQREQRL 157

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+  + ++  M + +P  E    +  + +  ++GGNL+E L  LS  LR +  M+ K+ A
Sbjct: 158 GVEFNTALDNMYKRIPEDEFQLVTAGMQISREVGGNLAEVLFRLSSTLRRKIEMEGKIDA 217

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ + K    ++  LP  +  ++Y   P  M  ++ +P G  L+ +    +  G + +R 
Sbjct: 218 LTSQGKMQGIVMTMLPLFIGFVLYHMEPKSMGRILTEPMGWALMALIFIMLTSGYLSIRK 277

Query: 182 MINFDV 187
           ++  DV
Sbjct: 278 IVAIDV 283


>gi|134291850|ref|YP_001115619.1| type II secretion system protein [Burkholderia vietnamiensis G4]
 gi|134135039|gb|ABO59364.1| type II secretion system protein [Burkholderia vietnamiensis G4]
          Length = 325

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 102/182 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R  K     P+  D+I R++R+G   + A+ ++  +  +P+  EFR   +  +
Sbjct: 139 VTRHRRRRMLKLERQLPDVCDMIARALRSGHSFTSALGMVGEEFPEPMSGEFRITFDEIN 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+SL +++  +   +P  ++ +F   + +Q + GGNL+E L +++ ++R+R  +  KV+
Sbjct: 199 YGVSLHDALVNLATRVPANDLRYFVIAVLIQRETGGNLAELLDSIAALVRERFKLFDKVR 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + SAWI+G LPF  + ++   +  +++VL  DP G  ++G     M  G++ +R
Sbjct: 259 VLSAEGRLSAWILGLLPFGTAGMMAVLNREFLSVLWQDPAGVKMVGAMLTSMAFGLLWIR 318

Query: 181 LM 182
            +
Sbjct: 319 RI 320


>gi|307332438|ref|ZP_07611502.1| Type II secretion system F domain protein [Streptomyces
           violaceusniger Tu 4113]
 gi|306881907|gb|EFN13029.1| Type II secretion system F domain protein [Streptomyces
           violaceusniger Tu 4113]
          Length = 312

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 87/187 (46%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  +F++  P    I+  + +AGL +  A+ +   +   P   E  +V     
Sbjct: 126 LGWQRQKRIERFINQLPELSRILANATQAGLALRTALGMAADEMEAPAGEELAKVAAKLA 185

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S+ +++  +   +P +E+    T + + ++ GG +  +L NL++ L +RK  + +V+
Sbjct: 186 VGHSIDDALEELAERLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTQTLEERKETRREVR 245

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +   +A+++  L      L+   + G ++ + +   G   + VA     IG  ++R
Sbjct: 246 TQLSQVTVTAYVVPLLGIGTLLLMNRIAAGSLDRMTSSFWGQAAVVVAFCLYGIGFFLIR 305

Query: 181 LMINFDV 187
            M   DV
Sbjct: 306 RMSKIDV 312


>gi|167836685|ref|ZP_02463568.1| pilus assembly protein, putative [Burkholderia thailandensis
           MSMB43]
          Length = 328

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 64/185 (34%), Positives = 114/185 (61%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+A+D++VR+VRAG+PV  A+     +S +PVRS F  + +   +
Sbjct: 141 RMLIVRFRLRFLAVFPDAIDLMVRAVRAGIPVVHAIVTAGVESQEPVRSTFHTIGDGLRV 200

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L E + +    + + + SFF+  + +Q + GG+L+E L NLS I+R R++++ K +A
Sbjct: 201 GADLKEVLEQACERLQIADFSFFAVCLMLQRETGGSLTETLENLSGIIRARRDVRLKTKA 260

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E K SA II ++PF +   +Y  +  Y+ +L +   GH +L +AA  + +G++++R 
Sbjct: 261 LTAEGKISAKIIAAVPFAIMGFLYLVNRPYIELLFDTGMGHTMLMLAAVLLTVGLLLIRK 320

Query: 182 MINFD 186
           + N D
Sbjct: 321 IANLD 325


>gi|87199541|ref|YP_496798.1| type II secretion system protein [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87135222|gb|ABD25964.1| type II secretion system protein [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 328

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 59/187 (31%), Positives = 107/187 (57%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  +    F  A+DI  R++RAG PV+ A++++  + +DP+ +EF  V +   
Sbjct: 142 LNRSAEKRRKRMEQQFAPAVDIFTRALRAGHPVASAISLLSTEMADPIGTEFGLVADEIA 201

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +L++S+  +     L+++  F+  +SVQS+ GGNL+E L NL+ ++RDR ++  KV+
Sbjct: 202 YGANLNDSLVALAERWELEDLHMFAVCLSVQSETGGNLAEILGNLASVIRDRASLYQKVR 261

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E +ASAW++  LP     +++  +P +   +  DP             LIG++ +R
Sbjct: 262 ALSSEGRASAWMLSVLPALTMLVLFMINPSFYLEVSGDPLFATSFAGMIGLYLIGVLWLR 321

Query: 181 LMINFDV 187
            M++  V
Sbjct: 322 SMVDLKV 328


>gi|119962927|ref|YP_948622.1| type II secretion system protein F [Arthrobacter aurescens TC1]
 gi|119949786|gb|ABM08697.1| putative bacterial type II secretion system protein F domain
           [Arthrobacter aurescens TC1]
          Length = 316

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 95/186 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  +  +R A+F     + L ++  S+RAG  +  AV  +  ++  P + EF R++    
Sbjct: 130 LSVMTSRRRAQFEAQLGDTLQMLSGSMRAGHSLLRAVDAVALEAQSPTKEEFARIVGEVR 189

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  L +++      +  ++  + +  I +  ++GG+L+E L +++  +R+R  +K +V+
Sbjct: 190 LGRDLRDALLDAANRLHSEDFLWATQAIEIHREVGGDLAEVLDHVAETIRERSQIKGQVR 249

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E + SA+++ +LP  +   +   +  Y+  L   P G ++L VA   + +G   + 
Sbjct: 250 ALSAEGRLSAYVLIALPTGMFLYLSLANGTYIQPLFTHPVGWIMLVVAVVLLALGSFWLS 309

Query: 181 LMINFD 186
            ++   
Sbjct: 310 RVVKIK 315


>gi|269836552|ref|YP_003318780.1| type II secretion system protein [Sphaerobacter thermophilus DSM
           20745]
 gi|269785815|gb|ACZ37958.1| type II secretion system protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 326

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 104/187 (55%), Gaps = 1/187 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++RT  F++   + + ++  S+RAG  +   + ++  ++  P+  EFRRV+    
Sbjct: 141 ISVRARRRTNAFVNQLGDTITLMANSLRAGYSLLQTMELVARETPPPMSEEFRRVVREVG 200

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+   E++S ++R +P +++    T I+VQ ++GGNL++ L  +   +R+R  +K +++
Sbjct: 201 LGIPTQEAMSHLLRRVPSEDLDLLITAINVQHEVGGNLAQILDVIGETIRERVRIKGEIR 260

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L+ +   S +II +LP  ++ L+   +PGY+  ++  P    +       + +G + MR
Sbjct: 261 VLTAQQSISGYIISALPVGLALLLMVINPGYVMGMMRWPW-ICMPIGGVVLIFLGFIAMR 319

Query: 181 LMINFDV 187
            ++N +V
Sbjct: 320 KIVNIEV 326


>gi|307293453|ref|ZP_07573299.1| Type II secretion system F domain protein [Sphingobium
           chlorophenolicum L-1]
 gi|306881519|gb|EFN12735.1| Type II secretion system F domain protein [Sphingobium
           chlorophenolicum L-1]
          Length = 332

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 68/195 (34%), Positives = 112/195 (57%), Gaps = 8/195 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  LI KR  +F   FP+AL+++ R +R+GLP+++ + V+  +   PV  EF+ + E   
Sbjct: 138 VSRLINKRVQQFTAKFPDALELLTRGLRSGLPIAETLGVVSSEVPGPVGEEFKLITERIK 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G ++ +++      +   E  FF   +++Q + GGNL+E L+NL+ +LR R  MK K++
Sbjct: 198 IGKTMDQALQETADRLGTAEFQFFVISLAIQRETGGNLAETLSNLATVLRQRSQMKLKIR 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRGHMLL-------GVAAAFM 172
           A+S E+KASA+IIG LPF V  L+ + +  YM+     DP G   L            +M
Sbjct: 258 AMSSESKASAYIIGVLPFTVFGLICYINYDYMSPFFTPDPVGLFGLSTMQVVGIGGMCWM 317

Query: 173 LIGIMVMRLMINFDV 187
            IG  +M  MINF++
Sbjct: 318 GIGAFIMAQMINFEI 332


>gi|94497257|ref|ZP_01303829.1| hypothetical protein SKA58_13683 [Sphingomonas sp. SKA58]
 gi|94423362|gb|EAT08391.1| hypothetical protein SKA58_13683 [Sphingomonas sp. SKA58]
          Length = 332

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 67/195 (34%), Positives = 113/195 (57%), Gaps = 8/195 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  LI KR ++F   FP+AL+++ R +R+GLP+++ + V+  +   PV  EF+ + E   
Sbjct: 138 VGRLITKRVSQFNAKFPDALELLTRGLRSGLPIAETLGVVSNEIPGPVGEEFKLITERIK 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G ++ +++      +   E  FF   +S+Q + GGNL+E L+NL+ +LR R  MK K++
Sbjct: 198 IGRTMEQALQETADRLGTAEFQFFVITLSIQRETGGNLAETLSNLATVLRQRSQMKLKIR 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRG-------HMLLGVAAAFM 172
           A+S E+KASA+IIG LPF V  ++ + +  YM      DP G        ++      +M
Sbjct: 258 AMSSESKASAYIIGVLPFLVFGMICYINFDYMKPFFTPDPVGIFGLSTMQVIGIGGMCWM 317

Query: 173 LIGIMVMRLMINFDV 187
            IG  +M  MINF++
Sbjct: 318 GIGAFIMAQMINFEI 332


>gi|297202076|ref|ZP_06919473.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
 gi|297148029|gb|EDY58318.2| integral membrane protein [Streptomyces sviceus ATCC 29083]
          Length = 314

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 84/187 (44%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  KF++  P    I+  +  AGL +  A+ +   +   P   E   V     
Sbjct: 128 LNWQRQKRIEKFINQLPELARILANATHAGLALRTAIGMAAEELEAPAGEELANVANQLA 187

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ + +++  M + +P +E+    T + + ++ GG +  AL NL+  L +RK  + +V+
Sbjct: 188 VGVPMEDALDEMAKRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVR 247

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +   +++ +  L      L+     G +  +   P G   + +A A   +G +++R
Sbjct: 248 TQLSQVNMTSYAVPVLGIGSLFLMNGVKDGALERMTGSPLGQGAVIIAFALYTVGFVLIR 307

Query: 181 LMINFDV 187
            M   DV
Sbjct: 308 RMSRIDV 314


>gi|227819313|ref|YP_002823284.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234]
 gi|227338312|gb|ACP22531.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234]
          Length = 317

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 104/179 (58%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  KF +  P ALD+  RS+ AG P+  A++++  +  DP+ +EF  + +    G++L +
Sbjct: 138 RIRKFAEKLPEALDVANRSLAAGHPLPAAISLVAREMPDPIGTEFGLLSDELTYGVTLDD 197

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++  +   + +++++  +  +SVQ+  GGNL E L NLS+ LRDR  +KAKV+++S E +
Sbjct: 198 ALMNLNDRVGVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRDRFMLKAKVKSISAEGR 257

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
            +A  +   PF +  ++   +P Y + + +   G +++      M IG +++  M+NF+
Sbjct: 258 ITAIFMSLYPFLLFGMIRTLAPTYFDPVWDSGYGTIIVSSLLVVMAIGNVILYKMVNFE 316


>gi|260892928|ref|YP_003239025.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
 gi|260865069|gb|ACX52175.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
          Length = 313

 Score =  108 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 113/186 (60%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++HL ++R A+F    P+AL ++  ++RAG  +  A+ V+  +   P+  EF R +    
Sbjct: 127 LRHLRRQRLARFQSQLPDALSLMANTMRAGFGMLQAMDVVRREMPPPISQEFGRTLAELG 186

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ + E++ R+   +P  ++    T + +Q Q+GGNL+E L N++  +R+R  +K +++
Sbjct: 187 LGMGVEEALERLSHRVPSDDLDLAVTAVIIQRQVGGNLAEILDNIATTIRERVRLKGEIR 246

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ + + SA IIG LP  ++ ++   +P Y+  LI +P G ++LG+ AA  ++G++++R
Sbjct: 247 ALTAQGRISALIIGLLPLALALILSLINPSYLLTLIYEPLGRIMLGLGAAGEIVGVLLLR 306

Query: 181 LMINFD 186
            +   +
Sbjct: 307 KITEVE 312


>gi|83950070|ref|ZP_00958803.1| type II/IV secretion system protein, TadC subfamily protein
           [Roseovarius nubinhibens ISM]
 gi|83837969|gb|EAP77265.1| type II/IV secretion system protein, TadC subfamily protein
           [Roseovarius nubinhibens ISM]
          Length = 322

 Score =  108 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 101/187 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKRTA+  +  P+A++++VRS+R G P S A++++  + SDP+ +EF  + +   
Sbjct: 136 ISSKAKKRTARLEEQLPDAIELMVRSLRVGHPFSAAISIVANEVSDPLATEFGIIADEAA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L E++  M   + +Q++ F +  +++Q Q GGNL+E L  LS+++R R  +  +V+
Sbjct: 196 YGRELGEALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILDGLSKVIRSRFKLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EAK S   +   P      +    P Y +  +              F+++ ++VMR
Sbjct: 256 AITAEAKWSGNFLSGFPLMALIGIQLIDPNYYDEAMEHAFFIPAAITVGVFLVLNLIVMR 315

Query: 181 LMINFDV 187
            ++N  V
Sbjct: 316 GLVNIKV 322


>gi|302381752|ref|YP_003817575.1| type II secretion system F domain protein [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302192380|gb|ADK99951.1| Type II secretion system F domain protein [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 326

 Score =  108 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 82/186 (44%), Positives = 126/186 (67%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  + K+R  KF  +F NA+D+IVR +++GLPV D   +I  +S  PV  EF+ ++E   
Sbjct: 140 VGFIGKRRLKKFSLEFANAVDVIVRGIKSGLPVHDCFKIIARESPAPVGPEFQTLVEGLG 199

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GL+L +++ +M   +P  E+ FF+ VI++Q + GGNL EAL+NL+ +LR R+ M  K++
Sbjct: 200 VGLTLGQALEKMYERIPTPELRFFTIVIAIQQKTGGNLGEALSNLTTVLRARRMMGEKIK 259

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS EA ASA IIGSLP  V TLV  T+P YM ++  D RG ++L  +A +M +GI++M+
Sbjct: 260 ALSSEATASAGIIGSLPPVVMTLVGLTTPAYMGLMFTDFRGQVMLLGSAIWMGMGILMMK 319

Query: 181 LMINFD 186
            MI+F 
Sbjct: 320 KMISFK 325


>gi|84385680|ref|ZP_00988711.1| hypothetical Flp pilus assembly protein TadB [Vibrio splendidus
           12B01]
 gi|84379660|gb|EAP96512.1| hypothetical Flp pilus assembly protein TadB [Vibrio splendidus
           12B01]
          Length = 300

 Score =  108 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 95/183 (51%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L+ +R  +F + FP+AL+I++ +V AG  +  A++ +     +P+  EF+ + +   L
Sbjct: 114 RFLVTRRRREFENTFPDALNILMSAVTAGDSLMQAISYVGDVMHNPIGREFKLMGDRLKL 173

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S    + R  +  P  E  FF+  I      GG L   +A L R+L D + ++ K  A
Sbjct: 174 GESPEVVLQRSCKNYPYPEFLFFTVTIRANIARGGQLKGVMARLIRVLVDSRTLEKKKMA 233

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ EA+ SA I+ ++P     ++ + +P  +  ++ DP G ++L       L G+ ++ L
Sbjct: 234 MTSEARISAKIVAAIPLIFMLILNYVNPDNVEFVLYDPEGRLVLFYVLGSELFGLFLVWL 293

Query: 182 MIN 184
           ++ 
Sbjct: 294 LVR 296


>gi|170724974|ref|YP_001759000.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
 gi|169810321|gb|ACA84905.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
          Length = 302

 Score =  108 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 91/183 (49%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
            +L++KR   F + FP+AL+I++ +V +G  +  A+A +     + +  EFR + E   L
Sbjct: 117 NYLMRKRKNAFDETFPDALNIMMSAVSSGESIMQAIAYVGQSLDNQIGLEFRDMGERLKL 176

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G    +   R  +  P     FF   I      GG L   +A L R+L D + +  K  A
Sbjct: 177 GEPPEQVFKRACKRFPYPTFLFFIVTIRANMSRGGQLKSVMARLIRVLMDARTLDKKKAA 236

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ EA+ SA I+ SLPF    L+ + SP  ++ ++ DP G  +L        +G+ ++ L
Sbjct: 237 MTSEARLSAKIVASLPFFFMILLSYLSPQNLDFVLTDPSGRYILYYVVGSEALGMFIIWL 296

Query: 182 MIN 184
           +I 
Sbjct: 297 LIR 299


>gi|229588192|ref|YP_002870311.1| hypothetical protein PFLU0644 [Pseudomonas fluorescens SBW25]
 gi|229360058|emb|CAY46912.1| putative membrane protein [Pseudomonas fluorescens SBW25]
          Length = 294

 Score =  108 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 97/184 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R  + ++  P  LD  VRS+++G  ++DAV   V    +P+R    RV     
Sbjct: 109 IAWRYQQRVQRMVEQLPQLLDHSVRSLKSGRTLADAVLGGVESIENPLRDAMGRVQRNVR 168

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+SL +S+S    +    E   F+  + V  + GGN SE L NL +++R+R+    +++
Sbjct: 169 MGVSLPDSVSDFAEFYEQDEFRLFALGLKVNHRYGGNASELLENLIKMIREREQGARQLK 228

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + +A+++G LP  +       +PGY+  + +D  G ++L  A A  L G  +M 
Sbjct: 229 AMTGETRMTAYVLGGLPVLIVGYFLVVNPGYLMNMWHDGTGRIMLFGALAMDLGGTFIMW 288

Query: 181 LMIN 184
            M+ 
Sbjct: 289 RMLR 292


>gi|163846104|ref|YP_001634148.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl]
 gi|222523839|ref|YP_002568309.1| type II secretion system protein [Chloroflexus sp. Y-400-fl]
 gi|163667393|gb|ABY33759.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl]
 gi|222447718|gb|ACM51984.1| type II secretion system protein [Chloroflexus sp. Y-400-fl]
          Length = 332

 Score =  108 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 96/191 (50%), Gaps = 4/191 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     +R   F +   + + ++  ++R G      + ++  ++  P  +EFRRV++   
Sbjct: 142 VNMRAAQRIKAFNNQLGDVITMMANALRGGYSFLQTLDMVSREAPPPAATEFRRVVQEVG 201

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S  E++  ++R MP  ++    T +++Q ++GGNL++ L  +   +R+R  +K ++ 
Sbjct: 202 LGRSTEEALQNLLRRMPSDDLDLLITAVTIQMEVGGNLAQILDTIGHTIRERVRIKGEIS 261

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLL-GVAAAFMLIGI 176
            L+ + + S+WII  LP  ++  +   +P YM  L      P+    +   +   + +G 
Sbjct: 262 TLTAQGRISSWIITGLPIGLAMFITVVNPDYMAPLFTFGFPPQAWCCMPVASLFMIAMGY 321

Query: 177 MVMRLMINFDV 187
             ++ +I+ +V
Sbjct: 322 FAIQKIIDIEV 332


>gi|269105135|ref|ZP_06157829.1| flp pilus assembly protein TadB [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|312621085|ref|YP_003993813.1| flp pilus assembly protein tadb [Photobacterium damselae subsp.
           damselae]
 gi|268160585|gb|EEZ39084.1| flp pilus assembly protein TadB [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|311872806|emb|CBX86897.1| Flp pilus assembly protein TadB [Photobacterium damselae subsp.
           damselae]
          Length = 306

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 87/184 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+   KF + FP+AL+I+  ++ +G  +  A+  +       V +EF  + E   
Sbjct: 120 ISWLQKRERKKFEESFPDALNILTSAISSGESIIHAIVFVGKTLDGAVGNEFSLMGERLQ 179

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S      +     P     FF   +      GG L + ++ L+RI+ D + ++ K  
Sbjct: 180 LGESPDNVFRKSCMRFPYPSFQFFVITLRANMHRGGQLKDVMSRLNRIMFDARAIEKKKY 239

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ EA+ SA I+ ++PF    ++ + SP     ++ +P G  +L        IGI ++ 
Sbjct: 240 ALTSEARISAKIVAAIPFIFLFMLQYLSPENYEFVMFNPGGRPILYYVIISESIGITIVW 299

Query: 181 LMIN 184
           L++ 
Sbjct: 300 LLMK 303


>gi|255658707|ref|ZP_05404116.1| type II secretion system protein F domain protein [Mitsuokella
           multacida DSM 20544]
 gi|260849094|gb|EEX69101.1| type II secretion system protein F domain protein [Mitsuokella
           multacida DSM 20544]
          Length = 319

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 90/177 (50%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
            KF +   + L ++  ++RAG     A  +I  +   P+  E + V+   +LG +L  ++
Sbjct: 142 KKFTNQLGDMLTMVANALRAGFSFMQAFELISREMDAPMGREVQLVVNEVNLGNTLESAL 201

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
             M R +   +     T + +Q Q+GG+L+  L  +S  + +R  M+ +V  L+ + + S
Sbjct: 202 DNMQRRVASPDFELVVTAVLIQRQVGGDLASILDTISETIAERVRMRREVMTLTAQGRLS 261

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
             ++  LPF ++ ++ F  P Y+  L+ D  G +++G+A    LIGI  ++ + +  
Sbjct: 262 GIVLAILPFAMAGILTFIKPDYLKPLLEDEVGRIIIGIAIVSELIGIFFIKKITDIR 318


>gi|207728102|ref|YP_002256496.1| pilus assembly protein tadb [Ralstonia solanacearum MolK2]
 gi|206591347|emb|CAQ56959.1| pilus assembly protein tadb [Ralstonia solanacearum MolK2]
          Length = 325

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 94/175 (53%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
               P A D+I R++RAG  +  A+ +   +   P+  E   V    + G+S++++++ +
Sbjct: 151 EAQLPEATDLISRALRAGHSLPSALEMAGDELPQPIGPELAIVFGQINYGVSMNDALAGL 210

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           +  +P+ ++ +    I +Q + GGNL+E L N+  ++R R  +  KV+ LS E +   WI
Sbjct: 211 IDRVPVDDLRYLVIAILIQRESGGNLAEILDNVGTLIRKRLQLLDKVRVLSAEGRLGGWI 270

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           + +LP  ++ +VY  +P  M+ L  DP G  ++  A A    G++ +R ++   +
Sbjct: 271 LTALPPAMAVVVYQLNPELMSTLWKDPVGIHMMWYAIAMTCFGVLWIRHIVRIHI 325


>gi|157961841|ref|YP_001501875.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
 gi|157846841|gb|ABV87340.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
          Length = 325

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 99/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR  K  + FP+ALD++ R+++AG   SDA+ ++  +   P+  EF  +    +
Sbjct: 139 LNRDTSKRMDKIEESFPDALDVLRRALQAGYSFSDAIKLVTEEMDGPLAKEFSLMFANIN 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                  ++   +  +P      F++ + VQ + GGNL+E + NL+R++R R   + +V+
Sbjct: 199 YSKDTKRALLGFIERVPSVSAMAFASAVMVQKETGGNLAENINNLARVIRLRFTFRRRVR 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + SAWI+  LPF +  ++Y  +PGY+  L     G+ LL   A  M +G M + 
Sbjct: 259 TLSAEGRLSAWILILLPFVLFAVIYIQTPGYVGELTGTEEGNQLLIWGAIGMFVGGMWIS 318

Query: 181 LMINFDV 187
            +I  D+
Sbjct: 319 KLIRIDM 325


>gi|167589558|ref|ZP_02381946.1| type II secretion system protein [Burkholderia ubonensis Bu]
          Length = 235

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 60/183 (32%), Positives = 118/183 (64%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           LI++   +FL+ FP+A+D+IVR+VRAG+PV+ A++ +   +++PVRS FR + ++  +G 
Sbjct: 50  LIRRFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRVGA 109

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L + +++    + + + SFF+  + +Q + GG+L E L  LS I+R R++++ K +AL+
Sbjct: 110 DLKDVLTQAADRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRSRRDIRLKSRALT 169

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + +  II ++PF +   ++  +  Y+ +L     GH +L +AAA ++IG++V+R + 
Sbjct: 170 AEGRITTNIISAVPFVMIGALFLVNRPYIMLLFTTHAGHTMLTIAAALLVIGLLVIRKIS 229

Query: 184 NFD 186
             +
Sbjct: 230 RLE 232


>gi|197106492|ref|YP_002131869.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1]
 gi|196479912|gb|ACG79440.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1]
          Length = 319

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 99/185 (53%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K +  +R A      P AL+IIVRS+ AG PV  A+A++  + SDPV +EF    +    
Sbjct: 134 KFVAGRRAAALGFQLPQALEIIVRSLEAGHPVPTAIALVGREMSDPVGTEFGMAADEIAY 193

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G +L ++I RM       +V  F+  + +Q + GGNL+  L   +  +R+R  M+ K++A
Sbjct: 194 GANLEQAIERMAERCQHPDVDLFAATVRLQERTGGNLTGLLKLNASTIRERHKMRLKIKA 253

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            S E +ASA I+ + PF    ++   SP +   +I++P     L     ++ IG +VMR 
Sbjct: 254 ASAEGRASAMILSAAPFIAVGMIMIISPKFYGDVIHEPAVKWGLLGLTVWVGIGNLVMRR 313

Query: 182 MINFD 186
           MI+  
Sbjct: 314 MIDMK 318


>gi|46201039|ref|ZP_00055942.2| COG4965: Flp pilus assembly protein TadB [Magnetospirillum
           magnetotacticum MS-1]
          Length = 331

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 80/187 (42%), Positives = 121/187 (64%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR   F   F +ALD++VR +R+GLP+ + +A+I  +  DPV +EFR++ E   
Sbjct: 145 LGVAAGKRLKAFTAQFADALDVVVRGIRSGLPLGECIAIIGREMPDPVGAEFRQITEGTR 204

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GL+L E+++R V  MP+ E+ +F+ V+++Q Q GGNL+E LA LS +LR RK M+ KV 
Sbjct: 205 IGLTLHEAMTRAVERMPMAEMRYFAIVLAIQQQTGGNLAETLAKLSEVLRARKRMRDKVL 264

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           + + EA+ASA IIGSLP  V  ++   +P Y+ VL     G++LL +       G+MVMR
Sbjct: 265 SYAAEARASAAIIGSLPLLVVAMLGMLAPQYIGVLFTTEPGNLLLAIGILTEAAGVMVMR 324

Query: 181 LMINFDV 187
            MINFD+
Sbjct: 325 GMINFDI 331


>gi|159901126|ref|YP_001547373.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159894165|gb|ABX07245.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 329

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 107/191 (56%), Gaps = 4/191 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +      R   F +   + + ++  S+R+G  +  ++ ++  ++  P+  EFRRV++   
Sbjct: 139 VSFKQGSRLKAFNNQLGDTVGLLANSLRSGYSLLQSMDLVSREAPPPISVEFRRVVQEVG 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGLSL + ++ ++R +P  ++    + I++Q+++GGNL+E L  ++  +R+R  +K +++
Sbjct: 199 LGLSLEDGMNNLLRRVPSDDLDLMVSAINIQAEVGGNLAEILDTIAHTIRERVRIKGQIR 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND---PRGHMLLGVAAAFMLI-GI 176
            L+ +A+ S +++  LP  ++ ++   +P YM  L+     P     + V +A M+I G 
Sbjct: 259 VLTSQARYSGYVVTFLPISIAVIITMLNPDYMAPLMTIGMPPDAWCCMPVCSAMMMIGGF 318

Query: 177 MVMRLMINFDV 187
             ++ ++N ++
Sbjct: 319 FAIKSIVNIEI 329


>gi|239929199|ref|ZP_04686152.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
          Length = 314

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 84/187 (44%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  KF++  P    I+  + +AGL +  A+ +   +   P   E  +V     
Sbjct: 128 LNWQRQKRIEKFINQLPELARILANATQAGLALRTAIGMAAEELEAPAGEELSKVANQLA 187

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S+ +++  +   +P +E+    T + + ++ GG +  AL NL+  L +RK  + +V+
Sbjct: 188 VGASMDDALGELADRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVR 247

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +   +++ +  L      L+     G +  +   P G   + +A     +G +++R
Sbjct: 248 TQLSQVSMTSYAVPVLGVGSLFLMNGVKDGALERMTGSPVGQAAVIIAFGLYAVGFVLIR 307

Query: 181 LMINFDV 187
            +   DV
Sbjct: 308 RLSRIDV 314


>gi|322419940|ref|YP_004199163.1| Type II secretion system F domain-containing protein [Geobacter sp.
           M18]
 gi|320126327|gb|ADW13887.1| Type II secretion system F domain protein [Geobacter sp. M18]
          Length = 321

 Score =  107 bits (267), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 54/180 (30%), Positives = 108/180 (60%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R  KF + FP+AL +I RS+RAG   + A+ ++  + +DPV   F+   E Q 
Sbjct: 135 LHFKIRQRLEKFTELFPDALTMIARSLRAGHSFNSAIQLVGEEIADPVGELFKTAYEQQL 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGL ++E+++ +   +   ++ FF+T I++ + +GGNLSE L NL++ +R+R  ++ +V+
Sbjct: 195 LGLRITETLTNLNERIESLDLRFFTTAIAINNDVGGNLSEILENLAKTIRERLKIRRQVR 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             + + + + +++G+LP     +    +P Y +VL  + +G  +L  A    ++G+ V+R
Sbjct: 255 VYTAQGRMTGYVLGALPVFTFLIFNVLNPKYESVLYKETKGLYVLAFAVVLQVVGLFVIR 314


>gi|83749634|ref|ZP_00946617.1| TRANSMEMBRANE TIGHT ADHERENCE TADB-RELATED PROTEIN; tadB1
           [Ralstonia solanacearum UW551]
 gi|207744162|ref|YP_002260554.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609]
 gi|83723695|gb|EAP70890.1| TRANSMEMBRANE TIGHT ADHERENCE TADB-RELATED PROTEIN; tadB1
           [Ralstonia solanacearum UW551]
 gi|206595566|emb|CAQ62493.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609]
          Length = 325

 Score =  107 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 94/175 (53%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
               P A D+I R++RAG  +  A+ +   +   P+  E   V    + G+S++++++ +
Sbjct: 151 ETQLPEATDLISRALRAGHSLPSALEMAGDELPQPIGPELAIVFGQINYGVSMNDALAGL 210

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           +  +P+ ++ +    I +Q + GGNL+E L N+  ++R R  +  KV+ LS E +   WI
Sbjct: 211 IDRVPVDDLRYLVIAILIQRESGGNLAEILDNVGTLIRKRLQLLDKVRVLSAEGRLGGWI 270

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           + +LP  ++ +VY  +P  M+ L  DP G  ++  A A    G++ +R ++   +
Sbjct: 271 LTALPPAMAVVVYQLNPELMSTLWKDPVGIHMMWYAIAMTCFGVLWIRHIVRIHI 325


>gi|167902782|ref|ZP_02489987.1| type II secretion system protein [Burkholderia pseudomallei NCTC
           13177]
          Length = 223

 Score =  107 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 116/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 36  RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 95

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 96  GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 155

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R 
Sbjct: 156 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 215

Query: 182 MINFD 186
           + N D
Sbjct: 216 IANLD 220


>gi|291437533|ref|ZP_06576923.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291340428|gb|EFE67384.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 312

 Score =  107 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 84/187 (44%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  KF++  P    I+  + +AGL +  A+ +   +   P   E  +V     
Sbjct: 126 LNWQRQKRIEKFINQLPELARILANATQAGLALRTAIGMAAEELEAPAGEELSKVANQLA 185

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S+ +++  +   +P +E+    T + + ++ GG +  AL NL+  L +RK  + +V+
Sbjct: 186 VGASMDDALGELADRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVR 245

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +   +++ +  L      L+     G +  +   P G   + +A     +G +++R
Sbjct: 246 TQLSQVSMTSYAVPVLGVGSLFLMNGVKDGALERMTGSPVGQAAVIIAFGLYAVGFVLIR 305

Query: 181 LMINFDV 187
            +   DV
Sbjct: 306 RLSRIDV 312


>gi|167624198|ref|YP_001674492.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
 gi|167354220|gb|ABZ76833.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
          Length = 325

 Score =  107 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 99/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR  K  + FP+ALD++ R+++AG   SDA+ ++  +   P+  EF  +    +
Sbjct: 139 LNRDTAKRMEKIEESFPDALDVLRRALQAGYSFSDAIKLVTEEMEGPLAKEFSLMFANIN 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                  ++   +  +P      F++ + VQ + GGNL+E + NL+R++R R   + +V+
Sbjct: 199 YSKDTKRALLGFIERVPSVSAMAFASAVMVQKETGGNLAENINNLARVIRLRFTFRRRVR 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + SAWI+  LPF +  ++Y  +PGY+  L     G+ LL   A  M +G M + 
Sbjct: 259 TLSAEGRLSAWILILLPFVLFAVIYIQTPGYVGELTGTEEGNQLLIWGAIGMFVGGMWIS 318

Query: 181 LMINFDV 187
            +I  D+
Sbjct: 319 KLIRIDM 325


>gi|126452248|ref|YP_001066154.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
 gi|242314755|ref|ZP_04813771.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
 gi|126225890|gb|ABN89430.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
 gi|242137994|gb|EES24396.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
          Length = 331

 Score =  107 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 116/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 144 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 203

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 204 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 263

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R 
Sbjct: 264 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 323

Query: 182 MINFD 186
           + N D
Sbjct: 324 IANLD 328


>gi|163801673|ref|ZP_02195571.1| hypothetical Flp pilus assembly protein TadB [Vibrio sp. AND4]
 gi|159174590|gb|EDP59392.1| hypothetical Flp pilus assembly protein TadB [Vibrio sp. AND4]
          Length = 300

 Score =  107 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 99/183 (54%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           ++L+KKR   F + FP+AL+I++ ++ AG  +  A++ +    +DP+  EF+ + +   L
Sbjct: 114 RYLVKKRRTNFENTFPDALNILMSAITAGDSLMQAISYVGDVMNDPIGVEFKLMGDRLKL 173

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G +    + R  +  P  E  FF+  +      GG L   LA L R+L D + +  K  A
Sbjct: 174 GETPEVVLQRSCKNYPYPEFLFFAVTLRANIARGGQLKGVLARLIRVLVDARTLDKKKMA 233

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ EA+ SA I+ ++P     ++ + +P  +N +++DP G ++L        +G++++ L
Sbjct: 234 MTSEARISAKIVAAIPVIFMIILNYINPDNLNFVLHDPSGRIVLFYVLGSEFLGLLIVWL 293

Query: 182 MIN 184
           ++ 
Sbjct: 294 LVR 296


>gi|121599706|ref|YP_993002.1| Flp pilus assembly protein TadB [Burkholderia mallei SAVP1]
 gi|124386517|ref|YP_001026334.1| hypothetical protein BMA10229_A0332 [Burkholderia mallei NCTC
           10229]
 gi|126449976|ref|YP_001080392.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
 gi|121228516|gb|ABM51034.1| Flp pilus assembly protein TadB [Burkholderia mallei SAVP1]
 gi|124294537|gb|ABN03806.1| putative membrane protein [Burkholderia mallei NCTC 10229]
 gi|126242846|gb|ABO05939.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
          Length = 331

 Score =  107 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 116/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 144 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 203

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 204 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 263

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R 
Sbjct: 264 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 323

Query: 182 MINFD 186
           + N D
Sbjct: 324 IANLD 328


>gi|53719427|ref|YP_108413.1| hypothetical protein BPSL1814 [Burkholderia pseudomallei K96243]
 gi|76811973|ref|YP_333440.1| hypothetical protein BURPS1710b_2045 [Burkholderia pseudomallei
           1710b]
 gi|126441337|ref|YP_001058912.1| type II secretion system protein [Burkholderia pseudomallei 668]
 gi|134282297|ref|ZP_01769002.1| type II secretion system protein [Burkholderia pseudomallei 305]
 gi|217421505|ref|ZP_03453009.1| type II secretion system protein [Burkholderia pseudomallei 576]
 gi|226196396|ref|ZP_03791978.1| type II secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237812169|ref|YP_002896620.1| type II secretion system protein [Burkholderia pseudomallei
           MSHR346]
 gi|254259104|ref|ZP_04950158.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
 gi|52209841|emb|CAH35813.1| putative membrane protein [Burkholderia pseudomallei K96243]
 gi|76581426|gb|ABA50901.1| putative membrane protein [Burkholderia pseudomallei 1710b]
 gi|126220830|gb|ABN84336.1| type II secretion system protein [Burkholderia pseudomallei 668]
 gi|134246335|gb|EBA46424.1| type II secretion system protein [Burkholderia pseudomallei 305]
 gi|217395247|gb|EEC35265.1| type II secretion system protein [Burkholderia pseudomallei 576]
 gi|225931613|gb|EEH27618.1| type II secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237506496|gb|ACQ98814.1| type II secretion system protein [Burkholderia pseudomallei
           MSHR346]
 gi|254217793|gb|EET07177.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
          Length = 331

 Score =  107 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 116/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 144 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 203

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 204 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 263

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R 
Sbjct: 264 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 323

Query: 182 MINFD 186
           + N D
Sbjct: 324 IANLD 328


>gi|197123314|ref|YP_002135265.1| type II secretion system protein [Anaeromyxobacter sp. K]
 gi|196173163|gb|ACG74136.1| type II secretion system protein [Anaeromyxobacter sp. K]
          Length = 320

 Score =  107 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 61/184 (33%), Positives = 102/184 (55%), Gaps = 1/184 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
              KR+AK  +  P ALD++ RS+RAG  V+ A  V+  +  +PV  EF R  E Q LGL
Sbjct: 136 ARAKRSAKLSEQLPEALDMMARSLRAGHAVTAAFQVVASEMPEPVSVEFARAYEEQRLGL 195

Query: 64  SLSESISRMVRYMP-LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +L  ++ +M    P   ++  F+    +Q + GGNL+E L  +   +R R     K++AL
Sbjct: 196 TLERAVVQMSERCPGNGDMKIFAVSAVIQRETGGNLAEILDQIGETIRQRYRFYGKLRAL 255

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E +ASA I+G+LPF V+  +   +P Y+ VL    +G M++  A+   ++G++ +  +
Sbjct: 256 TGEGRASAVILGALPFAVAVALSILNPEYLMVLPGTAKGQMIILGASVSWVVGLLWLYRL 315

Query: 183 INFD 186
              D
Sbjct: 316 TQVD 319


>gi|21223383|ref|NP_629162.1| integral membrane protein [Streptomyces coelicolor A3(2)]
 gi|8218172|emb|CAB92603.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
          Length = 316

 Score =  107 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 85/187 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  KF++  P    I+  + +AGL +  A+ +   +   P   E  +V +   
Sbjct: 130 LNWQRQKRIEKFINQLPELARILANATQAGLALRTAIGMAAEELEAPAGEELGKVADQLA 189

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S+ +++  +   +P +E+    T + + ++ GG +  AL NL+  L +RK  + +V+
Sbjct: 190 IGASMDDALGELAGRLPSRELVVLVTTLVLSNRAGGQVVGALRNLTETLEERKETRREVR 249

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +   +++ +  L      L+     G +  +   P G   +  A A   +G +++R
Sbjct: 250 TQLSQVTMTSYAVPVLGIGSLLLMNGVKDGALERMTGSPAGQAAVITAFALYAVGFVLIR 309

Query: 181 LMINFDV 187
            +   DV
Sbjct: 310 RLSRIDV 316


>gi|149909543|ref|ZP_01898197.1| TadB-like protein involved in pilus formation and/or
           proteinsecretion [Moritella sp. PE36]
 gi|149807448|gb|EDM67399.1| TadB-like protein involved in pilus formation and/or
           proteinsecretion [Moritella sp. PE36]
          Length = 305

 Score =  107 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 85/182 (46%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L ++   +F + FP AL+++  +V +G  +  A+  +       V  EF+ + +   LG
Sbjct: 121 WLQRREKKQFEEAFPEALNMLTSAVSSGESIMHAIIFVGTALDGEVGKEFKLMGDRLRLG 180

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S      +     P     FF   +    + GG L E +  L+R++ D + ++ K  AL
Sbjct: 181 DSPDSVFKKSCNRFPYPAFQFFVITLRANMRHGGQLKEIMTRLNRLMFDARAIEKKKFAL 240

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ASA I+G++PF    L+ + SP     ++  P G  +L        IGI ++  +
Sbjct: 241 TSEARASAKIVGAIPFVFLFLLQYLSPENFEFVMFHPSGRPILYYVLISEAIGISIIWAL 300

Query: 183 IN 184
           + 
Sbjct: 301 MK 302


>gi|254178308|ref|ZP_04884963.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
 gi|160699347|gb|EDP89317.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
          Length = 331

 Score =  107 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 116/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 144 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 203

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 204 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 263

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R 
Sbjct: 264 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 323

Query: 182 MINFD 186
           + N D
Sbjct: 324 IANLD 328


>gi|256785514|ref|ZP_05523945.1| integral membrane protein [Streptomyces lividans TK24]
 gi|289769410|ref|ZP_06528788.1| integral membrane protein [Streptomyces lividans TK24]
 gi|289699609|gb|EFD67038.1| integral membrane protein [Streptomyces lividans TK24]
          Length = 316

 Score =  107 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 85/187 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  KF++  P    I+  + +AGL +  A+ +   +   P   E  +V +   
Sbjct: 130 LNWQRQKRIEKFINQLPELARILANATQAGLALRTAIGMAAEELEAPAGEELGKVADQLA 189

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S+ +++  +   +P +E+    T + + ++ GG +  AL NL+  L +RK  + +V+
Sbjct: 190 IGASMDDALGELAGRLPSRELVVLVTTLVLSNRAGGQVVGALRNLTETLEERKETRREVR 249

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +   +++ +  L      L+     G +  +   P G   +  A A   +G +++R
Sbjct: 250 TQLSQVTMTSYAVPVLGIGSLLLMNGVKDGALERMTGSPAGQAAVITAFALYAVGFVLIR 309

Query: 181 LMINFDV 187
            +   DV
Sbjct: 310 RLSRIDV 316


>gi|156744076|ref|YP_001434205.1| type II secretion system protein [Roseiflexus castenholzii DSM
           13941]
 gi|156235404|gb|ABU60187.1| type II secretion system protein [Roseiflexus castenholzii DSM
           13941]
          Length = 323

 Score =  107 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 106/187 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           M+   ++R   F D  P  LD+I  S+R G  +  ++A + G   +P+R+E RRV +   
Sbjct: 137 MRIRRQRRKQAFSDQLPETLDLITASMRGGFSLVQSLANVAGDVQEPMRTELRRVFQEVQ 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGLS+++++  +V+ M   ++    T I + +++GGNL + L N+S  +R+R  ++ +V+
Sbjct: 197 LGLSITQALDNLVQRMESTDLDLVVTAIKIHARVGGNLGQILENISTTMRERAKLRREVR 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++   + S+++IG+LPF ++ +++  +P YM  L        +   A    + G +++R
Sbjct: 257 VITSMQRISSYVIGALPFALALIIFTINPTYMMRLFQPGLILCIPIGAFVSSVAGFLIIR 316

Query: 181 LMINFDV 187
            +++  +
Sbjct: 317 KIVDVRI 323


>gi|149175287|ref|ZP_01853909.1| secretion system protein TadB [Planctomyces maris DSM 8797]
 gi|148845896|gb|EDL60237.1| secretion system protein TadB [Planctomyces maris DSM 8797]
          Length = 323

 Score =  107 bits (266), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 105/187 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     +R  KF    P+AL+++ R++R+G  +S  ++V+V +   P+ +EF    E Q+
Sbjct: 137 LLFRRNRRFKKFGQQLPDALELVGRALRSGHSLSSGLSVVVQEMPPPISTEFALAYEEQN 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ + E++  M+  MP  ++ FF T + +Q Q GG+L+E L  +  I+R R  +  +VQ
Sbjct: 197 LGIPIGEALKNMLTRMPNLDLKFFVTAVVIQRQAGGDLAEILDKIGYIIRQRFKIMGQVQ 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ E + S  ++ +LP  +   VY+ +P Y+ +L  D  G  ++       ++G + ++
Sbjct: 257 ALTGEGRISGVVLMALPIALFFAVYYLNPDYVMLLFTDELGRKMIAGGIVLQVLGALWIK 316

Query: 181 LMINFDV 187
            ++N  +
Sbjct: 317 KIVNIKI 323


>gi|254198194|ref|ZP_04904616.1| type II secretion system protein [Burkholderia pseudomallei S13]
 gi|169654935|gb|EDS87628.1| type II secretion system protein [Burkholderia pseudomallei S13]
          Length = 331

 Score =  107 bits (266), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 116/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 144 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 203

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 204 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 263

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R 
Sbjct: 264 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 323

Query: 182 MINFD 186
           + N D
Sbjct: 324 IANLD 328


>gi|319795560|ref|YP_004157200.1| type II secretion system f domain [Variovorax paradoxus EPS]
 gi|315598023|gb|ADU39089.1| Type II secretion system F domain [Variovorax paradoxus EPS]
          Length = 285

 Score =  107 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 95/185 (51%), Gaps = 1/185 (0%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
              KKR  +   + P+AL  I  ++RAG  +S AV V+V     P+  EF  V++ Q LG
Sbjct: 102 WQRKKRRQQIESELPDALLFIASALRAGSALSVAVQVLVRDQQGPLGQEFGLVLKEQRLG 161

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +S  ++I +M + + + +       + V  ++GGNLSE L  L+  LR +  ++ ++QAL
Sbjct: 162 VSFDDAIQKMSQRLGIPDFVLVVVALRVSKEVGGNLSEPLQVLAETLRRKAILEGRIQAL 221

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + + +    ++   P  +  ++Y   P  M +L +   G  +L V    + +G  ++R +
Sbjct: 222 TAQGRIQGLVMTLFPLLLMGVLYLMQPT-MGLLFSTKIGWAVLFVIGVMLFLGYAMIRKI 280

Query: 183 INFDV 187
           +  D+
Sbjct: 281 VAIDI 285


>gi|281356957|ref|ZP_06243447.1| Type II secretion system F domain protein [Victivallis vadensis
           ATCC BAA-548]
 gi|281316515|gb|EFB00539.1| Type II secretion system F domain protein [Victivallis vadensis
           ATCC BAA-548]
          Length = 294

 Score =  107 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 99/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ L  +R  KF     +AL +I  S++AG  ++ A+  +  Q+  P+  EFR +I+   
Sbjct: 108 LRQLKVRRLEKFNFQLEDALGVISSSLKAGFSINQALEEVAEQNIHPISVEFRLLIQEIR 167

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ + +++  M R +  ++    +T I    Q GG L+  L  ++ ++R+R  +  KV+
Sbjct: 168 LGVPVEQALENMNRRLRSEDFELVATAILTARQTGGELTGTLERVASLIRERVRISNKVR 227

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+   +  A +I   P  +   +++ +P  +   + +P G  LL VA  F +IG +++R
Sbjct: 228 ALTALGRLQAILIALTPVALLIGLWWINPVMIRAFVTNPIGIALLIVAGIFDVIGFLIIR 287

Query: 181 LMINFDV 187
            ++  +V
Sbjct: 288 RIVTIEV 294


>gi|295836765|ref|ZP_06823698.1| integral membrane protein [Streptomyces sp. SPB74]
 gi|295826196|gb|EFG64731.1| integral membrane protein [Streptomyces sp. SPB74]
          Length = 314

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 89/187 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR   F+   P+   ++  +  AGL +  A+A+   +  +P   E   V +   
Sbjct: 128 LNWQRAKRIEAFISQLPDVARLLANATAAGLALRTALAMAAEELENPAGEELSNVADQLA 187

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S+ E++  + R +P +E+    T +++ ++ GG +  +L NL+  L +RK  + +V+
Sbjct: 188 LGRSVDEALDELQRRLPSRELVVLVTTLALSNKAGGTVVGSLRNLTVTLEERKETRREVR 247

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +  E  A+A+ + +L      LV   + G ++ +     G  L+ ++     +G  V+R
Sbjct: 248 TMLSEVNATAFTVPALGLGSLLLVNAQNDGALHRVTGSGLGQFLILLSLGLYTVGFFVIR 307

Query: 181 LMINFDV 187
            +   DV
Sbjct: 308 RLGRIDV 314


>gi|302521639|ref|ZP_07273981.1| integral membrane protein [Streptomyces sp. SPB78]
 gi|302430534|gb|EFL02350.1| integral membrane protein [Streptomyces sp. SPB78]
          Length = 242

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 88/187 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR   F+   P+   ++  +  AGL +  A+A+   +  +P   E   V +   
Sbjct: 56  LNWQRAKRIEAFISQLPDVARLLANATAAGLALRTALAMAAEELENPAGEELSNVADQLA 115

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S+ E++  + R +P +E+    T + + ++ GG +  +L NL+  L +RK  + +V+
Sbjct: 116 LGRSIDEALDELSRRLPSRELVVLVTTLVLSNKAGGTVVGSLRNLTVTLEERKETRREVR 175

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +  E  A+A+ + +L      LV   + G ++ +     G  L+ ++     +G  V+R
Sbjct: 176 TMLSEVNATAFTVPALGLGSLLLVNAQNDGALHRVTGSGLGQFLILLSLGLYTVGFFVIR 235

Query: 181 LMINFDV 187
            +   DV
Sbjct: 236 RLGRIDV 242


>gi|209546475|ref|YP_002278393.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537719|gb|ACI57653.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 317

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/184 (30%), Positives = 105/184 (57%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +R  KF    P ALD+  RS+ AG P+  A++++  +  DP+ +EF  + +    G
Sbjct: 133 RARARRMRKFELKLPEALDVANRSLAAGHPLPAAISLVAREMPDPIGTEFGLLSDELTYG 192

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           ++L +++  +   + +++++  +  +SVQ+  GGNL E L NLS+ LRDR  +KAKV+A+
Sbjct: 193 VTLDDALVNLADRVGVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRDRSMLKAKVKAI 252

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + +A  +   PF +  ++   SP Y + +     G +++ V  A M IG +++  M
Sbjct: 253 SSEGRITAIFMSMYPFLLYAMIKALSPTYFDPVWESGHGAVVVTVLLAVMAIGNVILYKM 312

Query: 183 INFD 186
           +NF+
Sbjct: 313 VNFE 316


>gi|329890993|ref|ZP_08269336.1| bacterial type II secretion system protein F domain protein
           [Brevundimonas diminuta ATCC 11568]
 gi|328846294|gb|EGF95858.1| bacterial type II secretion system protein F domain protein
           [Brevundimonas diminuta ATCC 11568]
          Length = 327

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 80/186 (43%), Positives = 120/186 (64%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    K R  KF   F +A+DI+VR ++ GLPV D   +I  +S +P+  EFR ++E   
Sbjct: 141 IGMKAKARMKKFSLAFADAIDILVRGIKTGLPVHDCFKIIARESPEPLAGEFRTLVEGMG 200

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GL+L++++ +M   MP  E+ FF+ VI++Q + GGNL+EAL NL+ +LR R+ M  K++
Sbjct: 201 VGLTLAQALDKMYERMPTPELKFFAIVIAIQQKSGGNLAEALGNLTTVLRARRMMVEKIK 260

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS EA ASA II SLP  V  LV  ++P YM ++  D RG ++L  AA +M  G+ VM+
Sbjct: 261 ALSSEAIASAGIIASLPPAVMILVMLSNPSYMMLMFTDIRGQVMLMGAALWMATGVFVMK 320

Query: 181 LMINFD 186
            MI+F 
Sbjct: 321 RMISFK 326


>gi|153833200|ref|ZP_01985867.1| TadB [Vibrio harveyi HY01]
 gi|156977405|ref|YP_001448311.1| Flp pilus assembly protein TadB [Vibrio harveyi ATCC BAA-1116]
 gi|148870471|gb|EDL69386.1| TadB [Vibrio harveyi HY01]
 gi|156528999|gb|ABU74084.1| hypothetical protein VIBHAR_06192 [Vibrio harveyi ATCC BAA-1116]
          Length = 300

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 94/183 (51%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           ++L+ +R   F + FP+AL+I++ +V AG  +  A++ +     + +  EF+ + +   L
Sbjct: 114 RYLVTRRRRDFENTFPDALNILMSAVTAGDSLMQAISYVGDVMDNSIGREFKLMGDRLKL 173

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S    + R  +  P  E  FF+  +      GG L   LA L R+L D + ++ K  A
Sbjct: 174 GESPEVVLQRSCKNYPYPEFLFFTVTLRANIARGGQLKGVLARLIRVLVDARTLEKKKMA 233

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ EA+ SA I+ ++P     ++ + +P  +N ++ DP G ++L         G+ ++ L
Sbjct: 234 MTSEARISAKIVAAIPLIFMIILNYVNPDNVNFVLYDPSGRLVLFYVLGSEFFGLFIVWL 293

Query: 182 MIN 184
           ++ 
Sbjct: 294 LVR 296


>gi|85705156|ref|ZP_01036256.1| type II/IV secretion system protein, TadC subfamily protein
           [Roseovarius sp. 217]
 gi|85670478|gb|EAQ25339.1| type II/IV secretion system protein, TadC subfamily protein
           [Roseovarius sp. 217]
          Length = 322

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 99/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR A   +  P+A++++VRS+R G P S A+ ++  +  DP+ +EF  + +   
Sbjct: 136 ISMKASKRMALLEEQLPDAIELMVRSLRVGHPFSSAIGIVATEVGDPLATEFGIIADEAA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   + +Q++ F +  +++Q Q GGNL+E LA L++++R R  +  +V+
Sbjct: 196 YGRDMGEALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFRLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EAK S   +   P      +    P Y N  +        + V   F+++ ++VMR
Sbjct: 256 AITAEAKWSGKFLSGFPIMALIGIQVIKPDYYNEAMEHAFFIPAVLVVGVFLVMNLIVMR 315

Query: 181 LMINFDV 187
            ++N  V
Sbjct: 316 ALVNIKV 322


>gi|319791196|ref|YP_004152836.1| type II secretion system f domain [Variovorax paradoxus EPS]
 gi|315593659|gb|ADU34725.1| Type II secretion system F domain [Variovorax paradoxus EPS]
          Length = 285

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 98/185 (52%), Gaps = 1/185 (0%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
              KKR  +   + P+AL  I  ++RAG  +S A+ V+V     P+  EF  V++ Q LG
Sbjct: 102 WQRKKRRQQIESELPDALLFIASALRAGSALSVAIQVLVRDQVGPLGQEFGLVLKEQRLG 161

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +S  ++I +M + + + +       + V  ++GGNLSE L  L+  LR +  ++ +++AL
Sbjct: 162 VSFDDAIQKMSQRLGIPDFVLVVVALRVSKEVGGNLSEPLQVLAETLRRKAILEGRIKAL 221

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + + +    ++   P  +  ++Y   P  M++L     G ++L V A  +++G  ++R +
Sbjct: 222 TAQGRIQGLVMTLFPLLLMGVLYLMQPT-MSLLFTTTIGWVVLTVIAIMLMLGYAMIRKI 280

Query: 183 INFDV 187
           +  D+
Sbjct: 281 VAIDI 285


>gi|113867006|ref|YP_725495.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
 gi|113525782|emb|CAJ92127.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
          Length = 282

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 98/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K + +KR     D  P+AL ++  ++RAG     A+  +V +S  P+  EF  ++    
Sbjct: 96  VKKMQRKRLMAIEDQMPDALLMMSSALRAGASFPMALESVVAESRPPISQEFDLLMREVR 155

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L +++  M + +P+ +    +  I++  ++GGNL+E L +++R LR++  M+ K++
Sbjct: 156 LGVDLMDALRNMEKRIPVPDFLMVTAAITISREVGGNLAETLESVARTLREKHQMEGKIR 215

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ + K    ++  LP  +  ++    P  M  L + P G   L V A   L+G   + 
Sbjct: 216 ALTAQGKMQGLVMTGLPLFLIVVLNHMEPVAMAPLFSSPIGWGTLSVIAVMELLGYKAIS 275

Query: 181 LMINFDV 187
            + + DV
Sbjct: 276 KITHIDV 282


>gi|167919044|ref|ZP_02506135.1| type II secretion system protein [Burkholderia pseudomallei BCC215]
          Length = 216

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 116/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 29  RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 88

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 89  GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 148

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R 
Sbjct: 149 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 208

Query: 182 MINFD 186
           + N D
Sbjct: 209 IANLD 213


>gi|239943898|ref|ZP_04695835.1| putative integral membrane protein [Streptomyces roseosporus NRRL
           15998]
 gi|239990352|ref|ZP_04711016.1| putative integral membrane protein [Streptomyces roseosporus NRRL
           11379]
 gi|291447361|ref|ZP_06586751.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
 gi|291350308|gb|EFE77212.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
          Length = 314

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 86/187 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KRT +F++  P    I+  + +AGL +  ++++   +  +P   E  RV     
Sbjct: 128 LNWQRIKRTERFINQLPELSRILANATQAGLALRTSLSMAAEELENPAGEELARVARRLA 187

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G  L +++S +   +P +E+    T + + ++ GG +  +L NL+  L +RK  + +V+
Sbjct: 188 VGEPLEDALSELTDRLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTETLEERKETRREVK 247

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +   +A+ +         L+    PG ++ +     G   + VA     IG +V+R
Sbjct: 248 TQLSQVTVTAYAVPIFGVGAMLLMNAVMPGALDRMTGAFIGQAAVVVAIVLYAIGFVVIR 307

Query: 181 LMINFDV 187
            +   DV
Sbjct: 308 RLSRIDV 314


>gi|149188859|ref|ZP_01867149.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1]
 gi|148837279|gb|EDL54226.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1]
          Length = 300

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 99/183 (54%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L+ +R   F + FP+AL+I++ +V AG  +  A++ +    ++P+  EF+ + +   L
Sbjct: 114 RFLVGRRRRDFENTFPDALNILMSAVTAGDSLMQAISYVGEAMNNPIGREFKLMGDRLKL 173

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S    + R  +  P  E  FF+  I      GG L   LA L R+L D + ++ K  A
Sbjct: 174 GESPEVVLQRSCKNYPYPEFLFFTVTIRANIARGGQLKGVLARLIRVLVDSRTLEKKKMA 233

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ EA+ SA I+ ++P   + ++ + +P  ++ ++NDP+G  +L       LIG+ ++ L
Sbjct: 234 MTSEARISAKIVAAIPLIFTVILNYVNPANVDFVLNDPQGQYVLFYVLGSELIGLSIVWL 293

Query: 182 MIN 184
           ++ 
Sbjct: 294 LVR 296


>gi|167911028|ref|ZP_02498119.1| type II secretion system protein [Burkholderia pseudomallei 112]
          Length = 217

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 116/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 30  RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 89

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 90  GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 149

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R 
Sbjct: 150 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 209

Query: 182 MINFD 186
           + N D
Sbjct: 210 IANLD 214


>gi|323495641|ref|ZP_08100712.1| flp pilus assembly protein tadb [Vibrio sinaloensis DSM 21326]
 gi|323319276|gb|EGA72216.1| flp pilus assembly protein tadb [Vibrio sinaloensis DSM 21326]
          Length = 306

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 90/184 (48%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           M  L +++  +F   FP+AL+++  +V +G  +  ++  +       V  EF+R+ E   
Sbjct: 120 MSWLEQRQQKEFEMAFPDALNMLASAVSSGESLMHSIMFVGKTLEGSVGEEFKRMGERLQ 179

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S      +     P +   FF   +    Q GG L + +  L+R++ D + ++ K  
Sbjct: 180 LGESPDSVFKKSCNRFPYRSFQFFVITLRANMQRGGQLKDVITRLNRLMFDARAIEKKKY 239

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ EA+ SA I+ ++PF    ++ + SP   + ++N P+G  +L        IGI ++ 
Sbjct: 240 ALTSEARTSAKIVAAIPFFFLFILQYLSPENYDFVMNHPKGQPILYYMLISEAIGIGIIW 299

Query: 181 LMIN 184
            ++ 
Sbjct: 300 SLMK 303


>gi|328884728|emb|CCA57967.1| putative integral membrane protein [Streptomyces venezuelae ATCC
           10712]
          Length = 315

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 85/187 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  KF++  P    I+  + +AGL +  A+++   +   P   E  +V +   
Sbjct: 129 LGWQRQKRIEKFINQLPELSRILANATQAGLALRMALSLAADEMEAPAGDELEKVAQQLA 188

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G SL +++  +   +P +E+    T + + ++ GG +  +L NL+  L +RK  + +V+
Sbjct: 189 VGTSLDDALGELAERLPSRELVVLVTTLVLANRAGGTVVSSLRNLTETLEERKETRREVR 248

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +   +A+ +  +      L+    PG ++ +     G   +  A    ++G + +R
Sbjct: 249 TQLSQVSMTAYSVPVIGVGSLLLIDNMQPGALDRMTGSGLGQFAVVAAFGLYVVGFIAIR 308

Query: 181 LMINFDV 187
                DV
Sbjct: 309 RFSKIDV 315


>gi|312882148|ref|ZP_07741897.1| Flp pilus assembly protein TadB [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370194|gb|EFP97697.1| Flp pilus assembly protein TadB [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 300

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 93/183 (50%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L+ KR   F + FP+AL+I++ +V AG  +  A+  +     + +  EF+R+ +   L
Sbjct: 114 RSLVTKRRRDFENTFPDALNILMSAVSAGDSLMQAIIYVGDVMDNAIGREFKRMGDRFKL 173

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S    + R  +  P  E  FF+  I      GG L   LA L R+L + + ++ K  A
Sbjct: 174 GESPDVILHRACKTYPYPEFLFFTVTIRANIARGGQLKGVLARLIRVLVESRTLEKKKMA 233

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ EA+ SA I+  +P     L+ + +P  ++ +++DP G  LL        +G+ ++ L
Sbjct: 234 MTSEARISAKIVAMIPVIFMLLLNYINPENIDFILHDPSGRGLLYYVVGSEFLGLFIVWL 293

Query: 182 MIN 184
           ++ 
Sbjct: 294 LVK 296


>gi|212635450|ref|YP_002311975.1| Tight adherence TadB-like transmembrane protein [Shewanella
           piezotolerans WP3]
 gi|212556934|gb|ACJ29388.1| Tight adherence TadB-like transmembrane protein, putative
           [Shewanella piezotolerans WP3]
          Length = 325

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/181 (32%), Positives = 98/181 (54%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR  K  + FP+ALD++ R+++AG   SDAV ++  +   P+  EF  +    +      
Sbjct: 145 KRMDKIEESFPDALDVLRRALQAGYSFSDAVKLVTEEMEGPLAKEFSLMFANINYSKDTK 204

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++   +  +P      F++ + VQ + GGNL+E + NLSR++R R   + +V+ LS E 
Sbjct: 205 RALLSFIERVPSVSAMAFASAVMVQKETGGNLAENIQNLSRVIRLRFTFRRRVRTLSAEG 264

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + SAWI+  LPF +  ++Y  +PGY+  L     GH LL   A  M +G + +  +I  D
Sbjct: 265 RLSAWILILLPFVLFAVIYIQTPGYVGELTGTEEGHKLLMWGAIGMFVGGLWISKIIRID 324

Query: 187 V 187
           +
Sbjct: 325 M 325


>gi|83719955|ref|YP_442976.1| pilus assembly protein [Burkholderia thailandensis E264]
 gi|257139200|ref|ZP_05587462.1| pilus assembly protein, putative [Burkholderia thailandensis E264]
 gi|83653780|gb|ABC37843.1| pilus assembly protein, putative [Burkholderia thailandensis E264]
          Length = 330

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 115/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 143 RMLIARFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 202

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  + + + +    + L + SFF   +++Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 203 GADMKDVLEQQAARLQLADFSFFGVCLTLQRETGGNLTETLENLSGIIRARRDIRMKTRA 262

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+ +L +   GH +L +A   + IG+ ++R 
Sbjct: 263 LTAEGRIASKIIAAVPFAIAAFLFVVNRPYIELLFHTRAGHKMLILAVVLLTIGLAMIRK 322

Query: 182 MINFD 186
           + N D
Sbjct: 323 IANLD 327


>gi|90412172|ref|ZP_01220178.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
           profundum 3TCK]
 gi|90326896|gb|EAS43281.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
           profundum 3TCK]
          Length = 302

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/182 (30%), Positives = 90/182 (49%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            LIKKR  +F   FP+AL+I++ +V AG  V  +++ +     + V   F+ + E   LG
Sbjct: 118 WLIKKRQNEFEQAFPDALNIMMSAVTAGESVMQSISYVGKTLDNKVGDLFQDMGERLKLG 177

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
               +   R  ++ P     FF   I      GG L   +A L R+L D + +  K  A+
Sbjct: 178 EPPEQVFKRASKHYPYPTFLFFVVTIRANMSRGGQLKAVMARLIRVLVDSRTLDKKKSAM 237

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ SA I+ SLPF    ++ F SP  +N ++ DP G  +L        +G+ ++ L+
Sbjct: 238 TSEARLSAKIVASLPFIFMVILSFISPQNLNYVLTDPNGRYVLYYVVGSETLGLFIIWLL 297

Query: 183 IN 184
           I 
Sbjct: 298 IR 299


>gi|294631143|ref|ZP_06709703.1| integral membrane protein [Streptomyces sp. e14]
 gi|292834476|gb|EFF92825.1| integral membrane protein [Streptomyces sp. e14]
          Length = 313

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 85/187 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  KF++  P    I+  + +AGL +  AV +   +   P   E  +V     
Sbjct: 127 LSWQRQKRIEKFINQLPELARILANATQAGLALRTAVGMAAEELEAPAGEELGKVSHQLA 186

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S+ +++  +   +P +E+    T + + ++ GG +  AL NL+  L +RK  + +V+
Sbjct: 187 LGASMDDALGELADRLPSRELVVLVTTLVLANRAGGQVVSALRNLTETLEERKETRREVR 246

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +   +++ +  L      L+     G +  +   P G   + VA A   +G +++R
Sbjct: 247 TQLSQVNMTSYAVPVLGIGALFLMNGVKDGALERMTGSPIGQGAVIVAFALYAVGFVLIR 306

Query: 181 LMINFDV 187
            +   DV
Sbjct: 307 RLSRIDV 313


>gi|70734196|ref|YP_257836.1| hypothetical protein PFL_0694 [Pseudomonas fluorescens Pf-5]
 gi|68348495|gb|AAY96101.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
          Length = 293

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 101/184 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L ++R  + ++  P  LD  VRS+++G  ++DAV   +  S+DP++S   R+     
Sbjct: 108 IAWLYQRRLKRMIEQLPALLDHSVRSLKSGRTLADAVLGAIEASNDPLKSAMGRIQRNVQ 167

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG++L +++S    +    E+  F+  + V  + GGN SE L NL +++R+R+    ++ 
Sbjct: 168 LGVNLPDAVSDFAEFYEQDELRMFALGLKVNHRYGGNASELLENLIKLIREREQGARQLS 227

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + +AW++G+LP  +      T+PGYM  + +D  G  +L  A    + G + + 
Sbjct: 228 AMTGETRMTAWVLGTLPLLLVGYFMLTNPGYMLGMWHDSAGQKMLITAVCLQIFGCLALW 287

Query: 181 LMIN 184
            M+ 
Sbjct: 288 RMLR 291


>gi|167815891|ref|ZP_02447571.1| type II secretion system protein [Burkholderia pseudomallei 91]
          Length = 212

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 116/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 25  RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 84

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 85  GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 144

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R 
Sbjct: 145 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 204

Query: 182 MINFD 186
           + N D
Sbjct: 205 IANLD 209


>gi|152994351|ref|YP_001339186.1| type II secretion system protein [Marinomonas sp. MWYL1]
 gi|150835275|gb|ABR69251.1| type II secretion system protein [Marinomonas sp. MWYL1]
          Length = 329

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 100/187 (53%), Gaps = 4/187 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           ++ + K   +F  + P A+D IVR  RAG+PVS+A  ++      P+  EF  V +   L
Sbjct: 143 RNAMAKHLKEFKQNLPQAIDSIVRIARAGVPVSNAFNLVAENLPGPLAKEFSLVDKWLRL 202

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ L +++    + +PL E  FF  ++ +  + GG LS+ L  L+  LR+R+ +  K++A
Sbjct: 203 GVPLRQAMQDSAKRVPLNEYRFFVVILIINQEAGGRLSDTLERLAHTLRERQELALKIRA 262

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI----M 177
            + E +ASA I+ SL       +Y  SP     L+ND  G+ +L  A   +L+G+     
Sbjct: 263 KTSEVRASAVIVASLAPLSLAYMYLNSPKDFQFLLNDSTGNNVLFYAFGSVLLGLSITHF 322

Query: 178 VMRLMIN 184
           +++ +I 
Sbjct: 323 MIKRVIR 329


>gi|126725974|ref|ZP_01741816.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium
           HTCC2150]
 gi|126705178|gb|EBA04269.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium
           HTCC2150]
          Length = 323

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 102/187 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR     +  P+A++++VRS++ G P S A+A +  +S DP+ +EF  + +   
Sbjct: 137 VNGKAKKRLGMMEEQLPDAIELMVRSLKVGHPFSSAIAAVAAESPDPIGTEFGVIADEAA 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  +++S+  M   + +Q++ F + V+ +Q++ GGNL+E L  L+ ++R R  +  KV 
Sbjct: 197 YGGEITDSLQEMAERLDMQDLRFLAVVVGIQAKSGGNLAEILEGLASVIRSRFRLFRKVA 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EAK S + + + P      +  T P + + ++        + V A  ++I I+ MR
Sbjct: 257 AITAEAKFSGFFLSAFPILALIGMLITKPDFYDEVMETSMFVPAVIVVAFLLIINIVFMR 316

Query: 181 LMINFDV 187
           +M N  V
Sbjct: 317 VMTNIKV 323


>gi|294676063|ref|YP_003576678.1| type II secretion system protein [Rhodobacter capsulatus SB 1003]
 gi|294474883|gb|ADE84271.1| type II secretion system protein [Rhodobacter capsulatus SB 1003]
          Length = 322

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 97/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR     D  P+A++++VRS+R G P++ A+  +  +  DP+ +EF  + +   
Sbjct: 136 VNGKAGKRLKLAEDQLPDAVELMVRSLRVGHPLASAIQAVAKEIPDPLGTEFGIIADEAA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G ++ +S+  +   + +Q++ F +  +S+Q   GGNL+E L  L++++R R  +  +V+
Sbjct: 196 YGRNVVDSLRDLAERLDMQDLRFLAVAVSIQQTSGGNLAEVLEGLAKVIRSRFRLFRRVR 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E K S   + + P  V  ++   +P Y + + + P       +  A +   ++ M+
Sbjct: 256 AITAEPKWSGVFLSAFPVAVLVVIQVVAPTYYDNVKDSPSFVPAALIVFALLGANVLFMK 315

Query: 181 LMINFDV 187
           +M    V
Sbjct: 316 IMTTIKV 322


>gi|29829794|ref|NP_824428.1| hypothetical protein SAV_3252 [Streptomyces avermitilis MA-4680]
 gi|29606903|dbj|BAC70963.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 313

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 89/187 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR   F+   P+   ++  +  AGL +  A+A+   +   P   E  RV +   
Sbjct: 127 LNWQRQKRIEAFIGQLPDVARLLANATAAGLALRTALAMAAEELEAPAGEELARVADQLT 186

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S+ +++  +   +P +E+    T + + ++ GG++  +L NL++ L DRK  + +V+
Sbjct: 187 LGRSVDDALDELAERLPSRELIVLVTTLVLANKAGGSVVSSLRNLTQTLEDRKETRREVR 246

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +  E  A+A+ +  L      L+  ++ G +  +     G  L+ ++     +G  V+R
Sbjct: 247 TMLSEVNATAFTVPLLGLGSLLLINSSNEGALARVTGSSLGQGLILLSLGLYTVGFFVIR 306

Query: 181 LMINFDV 187
            +   +V
Sbjct: 307 RLGKIEV 313


>gi|89053484|ref|YP_508935.1| type II secretion system protein [Jannaschia sp. CCS1]
 gi|88863033|gb|ABD53910.1| type II secretion system protein [Jannaschia sp. CCS1]
          Length = 322

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 95/187 (50%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR +   +  P+A++++VRS+R G P   ++  +  + SDP+ SE   + +   
Sbjct: 136 VSRTAKKRLSLLEEQLPDAVELMVRSLRVGHPFVASINTVSREMSDPIASELGVIADEAA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  ++ESI  M   + +Q++ F +  + +Q   GGNL+E LA L+ ++R R  +  KV+
Sbjct: 196 YGRDVAESIRAMADRLDIQDLRFLAVAVGIQQTSGGNLAEILAGLADVMRARFKLFRKVR 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++ EA+ S   +   P      +    P Y + +I+ P         A  + +  ++MR
Sbjct: 256 VITAEARGSGNFLSVFPILALVGINVMQPDYYSEVIDTPVFIPAAAGVAVALGLNWVIMR 315

Query: 181 LMINFDV 187
           +++N  V
Sbjct: 316 VLVNIKV 322


>gi|302553854|ref|ZP_07306196.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
 gi|302471472|gb|EFL34565.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
          Length = 314

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 86/187 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  KF++  P    I+  + +AGL +  A+ +   +   P   E  +V +   
Sbjct: 128 LNWQRQKRIEKFINQLPEMARILANATQAGLALRTAIGMAAEEMEAPAGEELGKVSDQLA 187

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S+ +++  +   +P +E+    T + + ++ GG +  AL NL+  L +RK  + +V+
Sbjct: 188 VGASMDDALGELADRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVR 247

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +   +++ +  L      L+     G ++ +     G   + +A +   +G +++R
Sbjct: 248 TQLSQVTMTSYAVPVLGVGSLFLMNGVKDGALDRMTGSAFGQAAVIIAFSLYAVGFVLIR 307

Query: 181 LMINFDV 187
            +   DV
Sbjct: 308 RLSRIDV 314


>gi|119773847|ref|YP_926587.1| putative type II secretion system protein F [Shewanella amazonensis
           SB2B]
 gi|119766347|gb|ABL98917.1| putative type II secretion system protein F [Shewanella amazonensis
           SB2B]
          Length = 283

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 99/186 (53%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           ++L ++R  +F+   P+AL++I  S++AG  V++A+  +  +   P++ EF+  +  Q L
Sbjct: 98  RYLHQRRRRRFVHQLPDALNMIAASMQAGANVTNAIEFMADEMDAPIKQEFQLFLREQRL 157

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+  + ++  + + +P  E       + +   +GGNL+E L  LS  LR +  M+ K+ +
Sbjct: 158 GVEFNTALDNVYKRIPESEFQLVVAGMQISRDVGGNLAEVLVRLSETLRKKIEMEGKITS 217

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ + K    ++  LP  +   +Y   P  M  ++ +P G  ++ V++  +  G M ++ 
Sbjct: 218 LTSQGKMQGIVMTLLPVAIGFTLYHMEPVSMGRILTEPVGWAVIAVSSLLLFGGYMTIKK 277

Query: 182 MINFDV 187
           +I  DV
Sbjct: 278 IITIDV 283


>gi|307294431|ref|ZP_07574275.1| Type II secretion system F domain protein [Sphingobium
           chlorophenolicum L-1]
 gi|306880582|gb|EFN11799.1| Type II secretion system F domain protein [Sphingobium
           chlorophenolicum L-1]
          Length = 333

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 102/187 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L ++R  K  + FP ALD  VR +RAG P++ A+ ++  +  DP+ SEF  V++   
Sbjct: 147 LTRLAQRRRKKMEEQFPVALDTFVRGLRAGHPIAAALDLLTKEMRDPIGSEFGIVVDEVT 206

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L +++ RM     + E+  F   +SVQS+ GGNL+E L NLS ++R+R ++  KV+
Sbjct: 207 YGADLRDALQRMAERWDMNEMHMFVISLSVQSETGGNLAEILENLSAVIRERASLFMKVR 266

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E + +A ++ +LP      ++  +P +   +  +    +         +IG + +R
Sbjct: 267 ALSSEGRMTAVMLTALPILAFVGLFLVNPAFYLDVAQEKMFIVGFVGLITLYIIGFVTIR 326

Query: 181 LMINFDV 187
            M++  V
Sbjct: 327 RMVDLKV 333


>gi|115361040|ref|YP_778177.1| type II secretion system protein [Burkholderia ambifaria AMMD]
 gi|115286368|gb|ABI91843.1| type II secretion system protein [Burkholderia ambifaria AMMD]
          Length = 325

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/178 (29%), Positives = 101/178 (56%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
             +R  K     P+  D+I R++R+G   S A+ ++  +  DP+  EFR   +  + G+S
Sbjct: 143 RNRRMLKLERQLPDICDMIARALRSGHSFSSALGMVGEEFPDPMGGEFRITFDEINYGVS 202

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L +++  +   +P  ++ +F   + +Q + GGNL+E L +++ ++R+R  +  KV+ LS 
Sbjct: 203 LHDALVNLATRVPAHDLRYFVIAVLIQRETGGNLAELLDSIASLVRERFKLFDKVRVLSA 262

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           E + SAWI+G LPF  + ++   +  +++VL  DP G  ++GV    M  G++ +R +
Sbjct: 263 EGRLSAWILGLLPFGTAAMMAMMNREFLSVLWQDPAGIKMVGVMLGSMAFGLLWIRRI 320


>gi|318057611|ref|ZP_07976334.1| hypothetical protein SSA3_06719 [Streptomyces sp. SA3_actG]
 gi|318080453|ref|ZP_07987785.1| hypothetical protein SSA3_28141 [Streptomyces sp. SA3_actF]
 gi|333024717|ref|ZP_08452781.1| putative integral membrane protein [Streptomyces sp. Tu6071]
 gi|332744569|gb|EGJ75010.1| putative integral membrane protein [Streptomyces sp. Tu6071]
          Length = 314

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 88/187 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR   F+   P+   ++  +  AGL +  A+A+   +  +P   E   V +   
Sbjct: 128 LNWQRAKRIEAFISQLPDVARLLANATAAGLALRTALAMAAEELENPAGEELSNVADQLA 187

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S+ E++  + R +P +E+    T + + ++ GG +  +L NL+  L +RK  + +V+
Sbjct: 188 LGRSIDEALDELSRRLPSRELVVLVTTLVLSNKAGGTVVGSLRNLTVTLEERKETRREVR 247

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +  E  A+A+ + +L      LV   + G ++ +     G  L+ ++     +G  V+R
Sbjct: 248 TMLSEVNATAFTVPALGLGSLLLVNAQNDGALHRVTGSGLGQFLILLSLGLYTVGFFVIR 307

Query: 181 LMINFDV 187
            +   DV
Sbjct: 308 RLGRIDV 314


>gi|320008844|gb|ADW03694.1| Type II secretion system F domain protein [Streptomyces
           flavogriseus ATCC 33331]
          Length = 311

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 86/187 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KRT  F+   P    ++  +  AGL +  ++A+   +   P   E R V +   
Sbjct: 125 LNWHRTKRTEAFISQLPEISRVLANATHAGLSLRTSIAMAADELESPAGDELRVVADQLG 184

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G +L +++  +   +P +E+    + + + ++ GG +  +L NL+  L +RK  + +V+
Sbjct: 185 VGRTLDDALGELAERLPSRELVVLVSTLILSNRAGGQVVSSLRNLTVTLEERKETRREVR 244

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +  A+A+ + ++      LV    PG ++ +     G + + V+     +G + +R
Sbjct: 245 TQLSQINATAYAVPAIGIGAMLLVNSILPGALDRMTGSVVGQIAVIVSLGLYALGFVAIR 304

Query: 181 LMINFDV 187
            +   D+
Sbjct: 305 RVSKIDI 311


>gi|221633001|ref|YP_002522226.1| type II secretion system protein F domain [Thermomicrobium roseum
           DSM 5159]
 gi|221156079|gb|ACM05206.1| Bacterial type II secretion system protein F domain
           [Thermomicrobium roseum DSM 5159]
          Length = 323

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 102/185 (55%), Gaps = 1/185 (0%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
              + R  +F++   + + ++  S+RAG  +   + ++  +S+ P+  EFRRV+    LG
Sbjct: 140 WRGRHRLQRFVNQLGDTIGLMANSLRAGYSLLQTMDLVARESAPPMSEEFRRVVREVGLG 199

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + L +++  ++  +P +++    T I++  ++GGNL++ L  +   +R+R  +K +++ L
Sbjct: 200 VPLQDALDHLLERIPSEDLDLLVTAIAINHEVGGNLAQILEIIGETIRERVRIKGEIRVL 259

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + +   S +II  LP  ++ L++  +P Y+  L+  P    +   A   M++G +VMR +
Sbjct: 260 TAQQSLSGYIISLLPVGLAILIFLLNPSYLLSLLRWPW-ICMPIGAVICMVLGFVVMRRI 318

Query: 183 INFDV 187
           +  +V
Sbjct: 319 VAIEV 323


>gi|170700845|ref|ZP_02891834.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
 gi|170134253|gb|EDT02592.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
          Length = 325

 Score =  105 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 101/178 (56%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
             +R  K     P+  D+I R++R+G   S A+ ++  +  +P+  EFR   +  + G+S
Sbjct: 143 RNRRMLKLERQLPDICDMIARALRSGHSFSSALGMVGEEFPEPMGGEFRITFDEINYGVS 202

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L +++  +   +P  ++ +F   + +Q + GGNL+E L +++ ++R+R  +  KV+ LS 
Sbjct: 203 LHDALVNLATRVPAHDLRYFVIAVLIQRETGGNLAELLDSIASLVRERFKLFDKVRVLSA 262

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           E + SAWI+G LPF  + ++   +  +++VL  DP G  ++GV    M  G++ +R +
Sbjct: 263 EGRLSAWILGLLPFGTAAMMAMVNREFLSVLWQDPAGIKMVGVMLGSMAFGLLWIRRI 320


>gi|220913385|ref|YP_002488694.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
 gi|219860263|gb|ACL40605.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
          Length = 316

 Score =  105 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 90/184 (48%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L  +R   F    P+ L +    +RAG  +  A+     ++  P+  E  R++    
Sbjct: 130 LNMLTARRRKTFDAQVPDTLQMFSGGLRAGHSLLRAIDAAAQENQGPMAEELSRIVNETR 189

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G  L ES++ + R    ++  + S  I +  ++GG+L+E L ++   +RDR  +K +V+
Sbjct: 190 IGRDLGESMADVSRRTASEDFYWISQAIEIHREVGGDLAEVLDHVGETIRDRNQVKGQVR 249

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E + SA ++ +LP  +   +   +P Y  V      G ++L  A A + +G + + 
Sbjct: 250 ALSAEGRISAMVLMALPILMFIGLVTFNPTYARVFTTTFIGFVMLAAAVALLAVGGLWLS 309

Query: 181 LMIN 184
            +I 
Sbjct: 310 RIIK 313


>gi|167894382|ref|ZP_02481784.1| type II secretion system protein [Burkholderia pseudomallei 7894]
          Length = 205

 Score =  105 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 116/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 18  RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 77

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 78  GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 137

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R 
Sbjct: 138 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 197

Query: 182 MINFD 186
           + N D
Sbjct: 198 IANLD 202


>gi|167845810|ref|ZP_02471318.1| type II secretion system protein [Burkholderia pseudomallei B7210]
          Length = 202

 Score =  105 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 116/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 15  RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 74

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 75  GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 134

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R 
Sbjct: 135 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 194

Query: 182 MINFD 186
           + N D
Sbjct: 195 IANLD 199


>gi|167824264|ref|ZP_02455735.1| type II secretion system protein [Burkholderia pseudomallei 9]
          Length = 204

 Score =  105 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 116/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 17  RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 76

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 77  GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 136

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R 
Sbjct: 137 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 196

Query: 182 MINFD 186
           + N D
Sbjct: 197 IANLD 201


>gi|167738670|ref|ZP_02411444.1| type II secretion system protein [Burkholderia pseudomallei 14]
          Length = 200

 Score =  105 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 116/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 13  RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 72

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 73  GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 132

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R 
Sbjct: 133 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 192

Query: 182 MINFD 186
           + N D
Sbjct: 193 IANLD 197


>gi|237653360|ref|YP_002889674.1| type II secretion system protein [Thauera sp. MZ1T]
 gi|237624607|gb|ACR01297.1| type II secretion system protein [Thauera sp. MZ1T]
          Length = 289

 Score =  105 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 94/184 (51%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L ++R        P+AL +I   +RAG+ ++ A+  +V +   P+  EF   +    LG+
Sbjct: 106 LRQRRLDLIEQQLPDALQVIAGGLRAGVSMTVALQQLVREGRPPIAQEFDLTLREHRLGI 165

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L E++  +   + +  ++     + + ++ GG+L+EAL   +  +R +  M+ K+ AL+
Sbjct: 166 PLDEALDHLAARVRMPSLTLVIAAMRIANETGGSLAEALERAALTVRSQLAMEGKIGALT 225

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            + K  A ++G LP  +  ++    P  M  L + P G   L V A   ++G++++R ++
Sbjct: 226 AQGKLQAVVVGMLPLALLLVLDRMEPEAMGFLWHSPPGWATLAVIATLEVLGVLLIRRIV 285

Query: 184 NFDV 187
             DV
Sbjct: 286 AIDV 289


>gi|254393102|ref|ZP_05008262.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
 gi|294814749|ref|ZP_06773392.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
 gi|326443128|ref|ZP_08217862.1| hypothetical protein SclaA2_18783 [Streptomyces clavuligerus ATCC
           27064]
 gi|197706749|gb|EDY52561.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
 gi|294327348|gb|EFG08991.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
          Length = 313

 Score =  105 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 83/187 (44%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++    KRT  F+   P    ++  + +AGL +  A+A+   +  DP   E   V +   
Sbjct: 127 LEWQRVKRTEAFIAQLPELTRVLANATQAGLSLRTALAMAAEELDDPAGHELGIVADQLA 186

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G SL +++  +   +P +E+    T + + ++ GG +  +L NL++ L +RK  + +V 
Sbjct: 187 VGQSLDDALGTLAERLPSRELIVLVTTLILANRAGGQVVTSLRNLTQSLEERKETRREVT 246

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               + K +A  +  L      ++   +PG ++ +     G      A     +G  ++R
Sbjct: 247 TTLSQIKVTALAVPLLGLGFLLMINGMTPGALDRMTGSVVGQGATLAAFGLYGLGAFLIR 306

Query: 181 LMINFDV 187
            +    V
Sbjct: 307 RLSRIQV 313


>gi|328952511|ref|YP_004369845.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
           DSM 11109]
 gi|328452835|gb|AEB08664.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
           DSM 11109]
          Length = 317

 Score =  105 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 1/185 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
              +R  K +   P+A+D IVRS++ G  V  A   +      P+ ++FR + E   +GL
Sbjct: 133 RRARREEKLVAQLPDAIDTIVRSLKVGQSVDAATLEVARGFPPPIGADFRAINEEMAMGL 192

Query: 64  SLSESISRMVRYMPL-QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
                I    R  P   +V        +Q + GG L++ LA L+  +R R + + +V+A 
Sbjct: 193 PFETVIKNFQRRYPRLPDVRILCATFVIQRETGGKLTDILAGLASTIRARLHFQRRVRAS 252

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E + +A+I+G LP   + + +   P YM V  + P G  LL V       G +VMR M
Sbjct: 253 TAEGRTTAFILGILPLGFAAVTWLLRPEYMRVFRDHPLGRKLLVVVILMEAAGFLVMRAM 312

Query: 183 INFDV 187
           +   V
Sbjct: 313 LRVKV 317


>gi|72162674|ref|YP_290331.1| integral membrane protein [Thermobifida fusca YX]
 gi|71916406|gb|AAZ56308.1| putative integral membrane protein [Thermobifida fusca YX]
          Length = 310

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 89/186 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR   F    P    ++  + +AGL +  A+ +   + +DP  +E R V E+  
Sbjct: 124 LNRQEEKRREAFTAQLPELARVLSNATQAGLALPTAIDMAADELADPAGAELRHVAESIK 183

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G    E+++ + + MP +E+    + + V ++ GG L  AL N+S  L +RK  + +V+
Sbjct: 184 VGQPFEEALNDLRKRMPSREIGVLISTLLVSARSGGALVTALRNISETLENRKETRREVR 243

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +  E  ++AW +  +      L+    PG +  +     G ++LG A     IG +V+R
Sbjct: 244 TILSETTSTAWTLLLMGVGSLFLLNALMPGTVARMTESFAGLVVLGAALTLFTIGFVVIR 303

Query: 181 LMINFD 186
            M   D
Sbjct: 304 RMSRID 309


>gi|167719678|ref|ZP_02402914.1| type II secretion system protein [Burkholderia pseudomallei DM98]
          Length = 205

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 116/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 18  RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 77

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 78  GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 137

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R 
Sbjct: 138 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 197

Query: 182 MINFD 186
           + N D
Sbjct: 198 IANLD 202


>gi|116255774|ref|YP_771607.1| putative transmembrane pilus component protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115260422|emb|CAK03526.1| putative transmembrane pilus component protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 318

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 88/187 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++ +++R  +     P A+D IV +VR G P++ AV  +      P   EF R+   Q 
Sbjct: 132 IRYYLQRRWLQIESQLPYAVDQIVSAVRTGKPLAIAVNAVADTGQMPASREFERIAREQK 191

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L E++ R  R +P          + + ++ GG++SE L  +S+  ++   +  K+ 
Sbjct: 192 LGIGLVEALDRHGRNVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKIT 251

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             S +A+ +  ++      +  +++F  P  ++ +  +  G ++  V A     G   MR
Sbjct: 252 TSSSQARMNFRVVNGGALFMILMIFFGQPELIDKVFGNAIGIVIAIVGAILYATGFFWMR 311

Query: 181 LMINFDV 187
            M+   V
Sbjct: 312 SMMKVSV 318


>gi|78062902|ref|YP_372810.1| type II secretion system protein [Burkholderia sp. 383]
 gi|77970787|gb|ABB12166.1| type II secretion system protein [Burkholderia sp. 383]
          Length = 325

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 119/185 (64%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L+++   +FL+ FP+A+D+IVR+VRAG+PV+ A++++   +++PVR+ FR + ++  +
Sbjct: 138 RALVERFRIRFLEAFPDAIDVIVRAVRAGIPVTQAISMVGDGAAEPVRATFRSMGDSLRV 197

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + +++    + + + SFF+  + +Q + GG+L E L  LS I+R R++++ K +A
Sbjct: 198 GADLKDVLTQAADRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + +  II ++PF +   ++  +  Y+ +L +   G+ +L +AA  + +G++V+R 
Sbjct: 258 LTAEGRITTNIISAVPFVMIGALFLVNRDYVMLLFSTHPGNTMLTIAAGLLTVGLLVIRK 317

Query: 182 MINFD 186
           +   D
Sbjct: 318 ISKLD 322


>gi|319788659|ref|YP_004148134.1| type II secretion system F domain [Pseudoxanthomonas suwonensis
           11-1]
 gi|317467171|gb|ADV28903.1| Type II secretion system F domain [Pseudoxanthomonas suwonensis
           11-1]
          Length = 282

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 95/185 (51%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L ++R  +  +  P+AL ++  S+RAG+  S A+ V+V     P+  E   V+  QH+G
Sbjct: 98  MLRRRRLDRIQEQLPDALQMLASSLRAGVGFSPAMEVLVQDGQPPLAQELALVLRQQHMG 157

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +   E++    + +P+ +   F + +++  ++GGNL+E LA L+  LR R  M+ KV+AL
Sbjct: 158 VRADEALESFSKRVPIVDAELFVSAVNISREVGGNLAETLATLAETLRRRLIMEKKVKAL 217

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + + K    ++  LP  +   +       M  + +   G +++GV      +G  + + +
Sbjct: 218 TAQGKLQGIVMALLPVFLVGYLSLMYAETMAPMFHSWHGWLVIGVCVVMEYLGYRMCKKI 277

Query: 183 INFDV 187
           +  DV
Sbjct: 278 MTIDV 282


>gi|182436319|ref|YP_001824038.1| putative integral membrane protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326776949|ref|ZP_08236214.1| Type II secretion system F domain protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|178464835|dbj|BAG19355.1| putative integral membrane protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326657282|gb|EGE42128.1| Type II secretion system F domain protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 314

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 86/187 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KRT +F++  P    I+  + +AGL +  ++++   +  DP   E  RV     
Sbjct: 128 LNWQRIKRTERFINQLPELSRILANATQAGLALRTSLSMAAEELEDPAGEELARVARRLA 187

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G  L +++S +   +P +E+    T + + ++ GG +  +L NL+  L +RK  + +V+
Sbjct: 188 VGEPLEDALSELTDRLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTETLEERKETRREVK 247

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +   +A+ +         L+    PG ++ +     G + + V+     IG +V+R
Sbjct: 248 TQLSQVTVTAYAVPLFGIGAMLLMNAVMPGALDRMTGAFFGQVAVVVSIVLYAIGFVVIR 307

Query: 181 LMINFDV 187
                DV
Sbjct: 308 RFSRIDV 314


>gi|148975966|ref|ZP_01812755.1| hypothetical Flp pilus assembly protein TadB [Vibrionales bacterium
           SWAT-3]
 gi|145964711|gb|EDK29964.1| hypothetical Flp pilus assembly protein TadB [Vibrionales bacterium
           SWAT-3]
          Length = 300

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 94/183 (51%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L+ +R   F + FP+AL+I++ +V AG  +  A++ +     +P+  EF+ + +   L
Sbjct: 114 RFLVTRRRRDFENTFPDALNILMSAVTAGDSLMQAISYVGEVMDNPIGREFKLMGDRLKL 173

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S    + R  +  P  E  FF+  +      GG L   LA L R+L D + ++ K  A
Sbjct: 174 GESPEVVLKRSCKNYPYPEFLFFTVTLRANIARGGQLKGVLARLIRVLVDSRTLEKKKMA 233

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ EA+ SA I+ ++P     ++ + +P  +N ++ D  G ++L       L G+ ++ L
Sbjct: 234 MTSEARISAKIVAAIPLVFMIILNYVNPDNVNYVLYDESGRVVLFYVLGSELFGLFIVWL 293

Query: 182 MIN 184
           ++ 
Sbjct: 294 LVR 296


>gi|209515955|ref|ZP_03264816.1| type II secretion system protein [Burkholderia sp. H160]
 gi|209503613|gb|EEA03608.1| type II secretion system protein [Burkholderia sp. H160]
          Length = 325

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 64/185 (34%), Positives = 117/185 (63%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +  A+FL  FP+ LD+I+R+VRAG+PV  A++    ++ +PVRS FR + ++  L
Sbjct: 138 RFLIARFRAQFLLVFPDTLDLIIRAVRAGIPVVQAISTAGKEAEEPVRSTFRTMGDSLRL 197

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L E + + V  + + + SFF+  + +Q + GGNL E L NLS I+R R++++ K +A
Sbjct: 198 GADLKEVLDKAVARLQIADFSFFAVCLLLQRETGGNLGETLENLSGIIRTRRDIRLKTRA 257

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF +   +Y  +  Y+++L +   GH +L +AA  ++IG+ +++ 
Sbjct: 258 LTAEGRIASKIISAVPFAIMGFLYVINRPYVDLLFHTRAGHKMLTLAAVLLVIGLSLIQK 317

Query: 182 MINFD 186
           +   D
Sbjct: 318 ISKLD 322


>gi|307245408|ref|ZP_07527496.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|307254363|ref|ZP_07536201.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|307258821|ref|ZP_07540553.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|306853749|gb|EFM85966.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|306862662|gb|EFM94618.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|306867172|gb|EFM99028.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
          Length = 295

 Score =  104 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 80/179 (44%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++    F + FP  + ++  +  +G+ +  A+       + P+  EF  + +    G  +
Sbjct: 114 RRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFTIIYKRLARGEDV 173

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
                      P +E  FF ++I      GG + E ++ L R + D   M+ K +A++ E
Sbjct: 174 MAVFQDSYSRYPYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAMTSE 233

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           A+ SA I+   P      +  T+P   + ++NDP G ++L       L+G+ ++  ++ 
Sbjct: 234 ARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIWWLMR 292


>gi|190149861|ref|YP_001968386.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|303251576|ref|ZP_07337750.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|307249755|ref|ZP_07531733.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
 gi|307252111|ref|ZP_07534010.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|307263185|ref|ZP_07544806.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|189914992|gb|ACE61244.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|302649574|gb|EFL79756.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|306858170|gb|EFM90248.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
 gi|306860411|gb|EFM92425.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|306871547|gb|EFN03270.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
          Length = 295

 Score =  104 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 80/179 (44%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++    F + FP  + ++  +  +G+ +  A+       + P+  EF  + +    G  +
Sbjct: 114 RRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFTIIYKRLARGEDV 173

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
                      P +E  FF ++I      GG + E ++ L R + D   M+ K +A++ E
Sbjct: 174 MAVFQDSYSRYPYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAMTSE 233

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           A+ SA I+   P      +  T+P   + ++NDP G ++L       L+G+ ++  ++ 
Sbjct: 234 ARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIWWLMR 292


>gi|172065280|ref|YP_001815992.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
 gi|171997522|gb|ACB68439.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
          Length = 325

 Score =  104 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 101/178 (56%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
             +R  K     P+  D+I R++R+G   S A+ ++  +  DP+  EFR   +  + G+S
Sbjct: 143 RNRRMLKLERQLPDICDMIARALRSGHSFSSALGMVGEEFPDPMGGEFRITFDEINYGVS 202

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L +++  +   +P  ++ +F   + +Q + GGNL+E L +++ ++R+R  +  KV+ LS 
Sbjct: 203 LHDALVNLATRVPAHDLRYFVIAVLIQRETGGNLAELLDSIASLVRERFKLFDKVRVLSA 262

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           E + SAWI+G LPF  + ++   +  +++VL  DP G  ++G     M +G++ +R +
Sbjct: 263 EGRLSAWILGLLPFGTAAMMAMLNREFLSVLWQDPAGIKMVGAMLGSMALGLLWIRRI 320


>gi|46143338|ref|ZP_00204445.1| COG4965: Flp pilus assembly protein TadB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208033|ref|YP_001053258.1| tight adherence protein B [Actinobacillus pleuropneumoniae L20]
 gi|165975970|ref|YP_001651563.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|303252183|ref|ZP_07338351.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|307247523|ref|ZP_07529568.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|126096825|gb|ABN73653.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
 gi|165876071|gb|ABY69119.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|302648966|gb|EFL79154.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|306856026|gb|EFM88184.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
          Length = 295

 Score =  104 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 80/179 (44%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++    F + FP  + ++  +  +G+ +  A+       + P+  EF  + +    G  +
Sbjct: 114 RRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFAIIYKRLARGEDV 173

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
                      P +E  FF ++I      GG + E ++ L R + D   M+ K +A++ E
Sbjct: 174 MAVFQDSYSRYPYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAMTSE 233

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           A+ SA I+   P      +  T+P   + ++NDP G ++L       L+G+ ++  ++ 
Sbjct: 234 ARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIWWLMR 292


>gi|282865304|ref|ZP_06274356.1| type II secretion system protein [Streptomyces sp. ACTE]
 gi|282559777|gb|EFB65327.1| type II secretion system protein [Streptomyces sp. ACTE]
          Length = 312

 Score =  104 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 88/187 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KRT  F++  P    ++  + +AGL +  A+ + V +  +P + E RRV +   
Sbjct: 126 LNWQRGKRTEAFINQLPELTRVLANATQAGLALRTAIGMAVEELDNPAQEELRRVADRLA 185

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G SL ++++ +V  +P +E++   + + + ++ GG +  +L NL+  L +RK  + +V 
Sbjct: 186 VGHSLDDALNELVERLPSRELTVLVSTLILSNRAGGTIVSSLRNLTETLEERKETRREVT 245

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L  + K +A  +  L      ++     G ++ +     G + + VAA     G   + 
Sbjct: 246 TLLSQVKVTAVAVPILGLGFLLIINGMRAGALDDMTGSTPGRIAVVVAAGLYAAGFFFIN 305

Query: 181 LMINFDV 187
            +    +
Sbjct: 306 RLTRVRI 312


>gi|116623252|ref|YP_825408.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116226414|gb|ABJ85123.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 321

 Score =  104 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 60/187 (32%), Positives = 111/187 (59%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   + R A F D FP+ L+ + RS+RAG   S A+ +   + SDP+  E RR  E Q+
Sbjct: 135 VRRKARMRVAAFEDQFPDCLEFVSRSMRAGHAFSVAIEMAHREFSDPLAGELRRAFEEQN 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  L   + ++ + +P  +V FF + + +Q + GGNL+E L  L++++R+R  ++A+++
Sbjct: 195 LGQPLEIVLRKLSQRVPSMDVQFFVSAVLLQKRTGGNLAELLDKLAQLMRERFKLRARIR 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S +   S  I+ ++P  V+ +++  +P Y    I+DP GH L+       L+G +++R
Sbjct: 255 AVSAQGLMSGRILSAIPAGVAVMMFLVNPKYARFFIDDPVGHELMAAGLGLQLLGYLIIR 314

Query: 181 LMINFDV 187
            ++ FDV
Sbjct: 315 KIVTFDV 321


>gi|307256570|ref|ZP_07538351.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|306864980|gb|EFM96882.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
          Length = 295

 Score =  104 bits (258), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 80/179 (44%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++    F + FP  + ++  +  +G+ +  A+       + P+  EF  + +    G  +
Sbjct: 114 RRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFAIIYKRLARGEDV 173

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
                      P +E  FF ++I      GG + E ++ L R + D   M+ K +A++ E
Sbjct: 174 MAVFQDSYSRYPYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAMTSE 233

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           A+ SA I+   P      +  T+P   + ++NDP G ++L       L+G+ ++  ++ 
Sbjct: 234 ARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIWWLMR 292


>gi|332798624|ref|YP_004460123.1| Type II secretion system F domain-containing protein
           [Tepidanaerobacter sp. Re1]
 gi|332696359|gb|AEE90816.1| Type II secretion system F domain protein [Tepidanaerobacter sp.
           Re1]
          Length = 309

 Score =  104 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 97/186 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K  I K+  +F     +AL I+   +RAG  ++ A+  +     DP+ SEFR       
Sbjct: 123 LKMSINKKQIQFEKQLGDALQILANGLRAGFSLTQAIESLAKDMPDPLGSEFRTASRELL 182

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ +   +S++   M  +++   +  + +Q Q+GGNL+E L N+S+ +RDR  +K  V+
Sbjct: 183 LGMDIETVLSKIADRMKSEDMRLLTAAVVIQLQVGGNLAEILDNISQTIRDRLAIKRSVR 242

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L+ + + S  I+G +P  +  ++   SP Y ++      GH+++ ++     +G + + 
Sbjct: 243 TLTAQGRISGQIVGIIPIALLLIISIISPDYTSIFFTTTYGHIMIFISVIMECLGFLAIY 302

Query: 181 LMINFD 186
            +++  
Sbjct: 303 KIVDIK 308


>gi|253580449|ref|ZP_04857714.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848179|gb|EES76144.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 257

 Score =  104 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 89/192 (46%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRV 55
             +I++R       F +AL  +  +V+AG  V  AV   V            +  EFR +
Sbjct: 66  NRMIRERRKNLNYQFKDALTSLSVAVQAGYSVESAVKTCVRDLERLYGKGTDIVEEFRYI 125

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
              QH+ + L E    +     ++++  F++V     + GG+++  +  +SR+L D+ ++
Sbjct: 126 ESQQHISVPLEELFLDLGERSQIEDIENFASVFYTAKRTGGDMNRVIQKVSRMLGDKIDV 185

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K +++A     K+   I+  +P  +   +  TSPG+++VL  +P G   + +        
Sbjct: 186 KKEIEATLAAKKSEQMIMSLMPVGIILYLQMTSPGFLSVLYGNPFGIAAMSICLVIYAAA 245

Query: 176 IMVMRLMINFDV 187
             + R +++ +V
Sbjct: 246 YWLGRRIVDIEV 257


>gi|90406746|ref|ZP_01214939.1| MaoC protein [Psychromonas sp. CNPT3]
 gi|90312199|gb|EAS40291.1| MaoC protein [Psychromonas sp. CNPT3]
          Length = 308

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 95/184 (51%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            +  ++  +F   FP  ++ I R+V AG+ V  A+A +       +  EF  + +   +G
Sbjct: 123 FIRAQQIKEFEHSFPQVIEQISRAVAAGISVPQAIAQVPEYQQGLLAHEFSLLRDRLEIG 182

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +SL +++ +    +P     FFS  + +  + GG L E L +LSR L +   +K K+++L
Sbjct: 183 ISLKQALQQSTYRLPYSGFHFFSVALILNQENGGQLREVLHSLSRTLHNNHAIKMKIKSL 242

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E + +A ++  LP C+ +++YF SP    VL + P G+ +L      M +G+ ++ ++
Sbjct: 243 TAEPRMTALVLACLPLCLISVMYFKSPASFAVLTDTPTGNDVLMYVIGSMALGLGIINVL 302

Query: 183 INFD 186
               
Sbjct: 303 TKVR 306


>gi|254506141|ref|ZP_05118285.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16]
 gi|219550959|gb|EED27940.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16]
          Length = 306

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 89/184 (48%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L  ++  +F   FP+AL+++  +V +G  +  ++  +       V  EF+R+ E   
Sbjct: 120 LTILESRQQKEFEMAFPDALNMLASAVSSGESLMHSIIFVGKSLEGSVGEEFKRMGERLQ 179

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S      +     P +   FF   +    Q GG L + +  L+R++ D + ++ K  
Sbjct: 180 MGESPDTVFRKSCNRFPYRSFQFFVITLRANMQRGGQLKDVITRLNRLMFDARAIEKKKY 239

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ EA+ SA I+ ++PF    ++ + SP   + ++N P+G  +L        IGI ++ 
Sbjct: 240 ALTSEARTSAKIVAAIPFFFLFMLQYLSPENYDFVMNHPKGQPILYYMLISEAIGISIVW 299

Query: 181 LMIN 184
            ++ 
Sbjct: 300 GLMR 303


>gi|54309664|ref|YP_130684.1| Flp pilus assembly protein TadB [Photobacterium profundum SS9]
 gi|46914102|emb|CAG20882.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
           profundum SS9]
          Length = 302

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/182 (29%), Positives = 90/182 (49%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L+KKR  +F   FP+AL+I++ +V AG  +  +++ +     + V + F+ + E   LG
Sbjct: 118 WLLKKRRDEFEQTFPDALNIMMSAVTAGESIMQSISYVGKTLDNKVGAVFQDMGERLKLG 177

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
               +   R  ++ P     FF   I      GG L   +A L R+L D + +  K  A+
Sbjct: 178 EPPEQVFKRASKHYPYPTFLFFVVTIRANMSRGGQLKPVMARLIRVLVDSRTLDKKKSAM 237

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ SA I+ SLPF     + F SP  +N ++ DP G  +L        +G+ ++ L+
Sbjct: 238 TSEARLSAKIVASLPFIFMVFLSFISPQNLNYVLTDPSGRYVLYYVVGSETLGLFIIWLL 297

Query: 183 IN 184
           I 
Sbjct: 298 IR 299


>gi|312883312|ref|ZP_07743038.1| putative Flp pilus assembly protein TadB [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309368928|gb|EFP96454.1| putative Flp pilus assembly protein TadB [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 304

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 91/183 (49%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K++  ++   F+++FP+AL+I+  ++ +G  +  A   +  Q ++ V  EF+ + E   +
Sbjct: 119 KYMGGRKKKIFVENFPDALNILSGAISSGQSIVHAFEYVGSQLNNDVGKEFKIISERLLI 178

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G +  + + R     P  E  FF + I +    GG L + +  ++R++ + ++++ K  +
Sbjct: 179 GENPDDVLERSGIQYPYLEYFFFISAIRINISRGGQLKDIINKINRLMFESRSLEKKKNS 238

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E++ SA I+G LP     ++ F SP   + ++    G  +         IG  ++  
Sbjct: 239 LTAESRMSAKILGVLPIGFLFVLKFISPEDFDFVMFQEEGRPIFYYLICSEFIGFFIIWR 298

Query: 182 MIN 184
           +I 
Sbjct: 299 IIK 301


>gi|32471257|ref|NP_864250.1| hypothetical protein RB1148 [Rhodopirellula baltica SH 1]
 gi|32396959|emb|CAD71929.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
          Length = 314

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 89/179 (49%), Gaps = 3/179 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  +     P    +I R+VR+G  V+ A+ +I      P+R EF    E Q LG+    
Sbjct: 138 RNQQLSRQLPEVFQLISRAVRSGQTVTSALQMIAEDCPSPIREEFALCYEQQELGMWREL 197

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +  ++     + E+  F   + VQ++ GG+L E L NLS+++  R  ++ +++AL+ E +
Sbjct: 198 AFRKLAERNQVMELRIFVVALLVQNRSGGDLVELLDNLSKMVTKRLRLRDRIKALTAEGR 257

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
             A ++  LPF     +   SP Y   L+  PR   LL        IG +++R ++NF+
Sbjct: 258 MQALVLVVLPFVALGAIVLFSPEYAETLLERPR---LLVATGVSQGIGALLIRRIVNFE 313


>gi|86360425|ref|YP_472313.1| hypothetical protein RHE_PE00149 [Rhizobium etli CFN 42]
 gi|86284527|gb|ABC93586.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 321

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 88/187 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++ +++R  +     P A+D IV +VR G P++ AV  +      P   EF R+   Q 
Sbjct: 135 IRYFLQRRWLQIESQLPYAVDQIVSAVRTGKPLAVAVNAVADTGQMPASREFERIAREQK 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L E++ R  R +P          + + ++ GG++SE L  +S+  ++   +  K+ 
Sbjct: 195 LGIGLVEALDRHGRTVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKIS 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             S +A+ +  ++      +  +++F  P  ++ +  +  G ++  V A     G   MR
Sbjct: 255 TSSSQARMNFRVVNGGALFMILMIFFGQPELIDKVFGNAIGIVIAIVGAILYATGFFWMR 314

Query: 181 LMINFDV 187
            M+   V
Sbjct: 315 SMMKVSV 321


>gi|209809174|ref|YP_002264712.1| bacterial type II secretion system protein F [Aliivibrio
           salmonicida LFI1238]
 gi|208010736|emb|CAQ81127.1| bacterial type II secretion system protein F [Aliivibrio
           salmonicida LFI1238]
          Length = 303

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 87/182 (47%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L K+   +F D FP+AL+++  +V +G  +  A+  +       V  EF+R+ E   LG
Sbjct: 118 WLGKREKNRFEDSFPDALNMLSSAVSSGEGIMHAIIFVGASLDGKVGKEFKRMGEQLQLG 177

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S      +     P     FF   +    + GG L E +  L+R++   ++++ K  AL
Sbjct: 178 ESPDTVFRKSCARFPYPSFQFFIITLRTSMERGGQLKEIMRRLNRLMFGARSIEKKKYAL 237

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ SA I+ S+PF    ++ + SP     ++ +P G  +L        IGI+ + L+
Sbjct: 238 TSEARTSAKIVASIPFIFLFMLQYLSPENYEYVMFNPDGRPILYYVLISESIGILTIWLL 297

Query: 183 IN 184
           + 
Sbjct: 298 MK 299


>gi|323493930|ref|ZP_08099047.1| putative Flp pilus assembly protein TadB [Vibrio brasiliensis LMG
           20546]
 gi|323311871|gb|EGA65018.1| putative Flp pilus assembly protein TadB [Vibrio brasiliensis LMG
           20546]
          Length = 304

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 92/182 (50%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L +++  KF ++FP+AL+I+  ++ +G  +  A   +  Q  + V +EF+ + E   +G
Sbjct: 120 KLKQRQEEKFKNNFPDALNILSGAISSGQSIVHAFEYVGKQLDNEVGNEFKFMAERLLIG 179

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
               + + R     P  E  FF++ I +    GG L + +  ++R++ D + ++ K  AL
Sbjct: 180 EDPDDVLERSATTFPYLEYFFFASTIRINLSRGGQLKDVINRINRLMFDSRAVEKKKNAL 239

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ASA II  LP     ++ FTSP   + ++ +P G  +         IG + +  +
Sbjct: 240 TSEARASAKIIACLPVIFLVILKFTSPENYSFVMFEPGGQPIFYYVLISEFIGFVCIWFI 299

Query: 183 IN 184
           + 
Sbjct: 300 LR 301


>gi|221197784|ref|ZP_03570830.1| type II secretion system protein [Burkholderia multivorans CGD2M]
 gi|221204658|ref|ZP_03577675.1| type II secretion system protein [Burkholderia multivorans CGD2]
 gi|221175515|gb|EEE07945.1| type II secretion system protein [Burkholderia multivorans CGD2]
 gi|221181716|gb|EEE14117.1| type II secretion system protein [Burkholderia multivorans CGD2M]
          Length = 337

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 88/186 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R  K +   P+ LD IVR V  G  V  A    +  + +P+R     V     
Sbjct: 152 LASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTTEEPLRGCLDHVSRMLR 211

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  + +    +E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 212 GGVEIDRAMLHIAKIYRTEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELT 271

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SA+++  LP  +++ V  T+P Y++ + NDP G MLL +A    L G + + 
Sbjct: 272 AMSAETRLSAFVLVMLPIAIASFVIMTNPQYLHGMWNDPSGQMLLVIAFLLQLFGSIWLY 331

Query: 181 LMINFD 186
            M    
Sbjct: 332 RMARLR 337


>gi|221213136|ref|ZP_03586112.1| type II secretion system protein [Burkholderia multivorans CGD1]
 gi|221167349|gb|EED99819.1| type II secretion system protein [Burkholderia multivorans CGD1]
          Length = 337

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 88/186 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R  K +   P+ LD IVR V  G  V  A    +  + +P+R     V     
Sbjct: 152 LASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTTEEPLRGCLDHVSRMLR 211

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  + +    +E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 212 GGVEIDRAMLHIAKIYRTEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELT 271

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SA+++  LP  +++ V  T+P Y++ + NDP G MLL +A    L G + + 
Sbjct: 272 AMSAETRLSAFVLVMLPIAIASFVIMTNPQYLHGMWNDPSGQMLLVIAFLLQLFGSIWLY 331

Query: 181 LMINFD 186
            M    
Sbjct: 332 RMARLR 337


>gi|227114880|ref|ZP_03828536.1| putative type IV pilus protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 326

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/183 (29%), Positives = 98/183 (53%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +  ++K      +  P A+D I RS RAG+PV++  +++    + P+ +EF+ +     L
Sbjct: 141 RSTLQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTGPLANEFKTIDHWLRL 200

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ L + I      +P+ E  FF  ++ +  + GG L E L  LS  LR+R+ ++ KVQ+
Sbjct: 201 GIPLRQVIQASATRVPMSEYRFFVVILIINQEAGGRLGETLERLSATLRERRELQLKVQS 260

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            + EA+ASA I+ +L       +Y  SP   + L +DP G  +L  A   + +G+++  +
Sbjct: 261 KTSEARASAKIVAALFPGCLAYLYMKSPEDFSFLFSDPVGTTVLIYALCSVSVGMLITHV 320

Query: 182 MIN 184
           M+ 
Sbjct: 321 MVK 323


>gi|167842100|ref|ZP_02468784.1| type II secretion system protein [Burkholderia thailandensis
           MSMB43]
          Length = 200

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 115/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 13  RILIARFKQRFLGVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 72

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 73  GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 132

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+++L     GH +L +AA  + IG+ ++R 
Sbjct: 133 LTAEGRIASKIIAAVPFAIAAFLFVVNRPYIDLLFRTRAGHKMLILAAVLLTIGLAMIRK 192

Query: 182 MINFD 186
           + N D
Sbjct: 193 IANLD 197


>gi|325111218|ref|YP_004272286.1| type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324971486|gb|ADY62264.1| Type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 286

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 86/184 (46%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  +  +R  + L   P  +D + R+ R G  +   + ++   +  P+  E  R +    
Sbjct: 98  LMTMRSRRQGQILRQLPPMIDELARAARTGRSLDQCLEMVATDTPAPLGDEMERSVRKLQ 157

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G++++E++  +     +  +   +T +SV  Q GG+L   L  L+R LRDR     +++
Sbjct: 158 MGVTMNEALYELPERTGVNGLRILATALSVHQQTGGDLVRVLERLARTLRDRGMFLGRLR 217

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++  ++A+A ++  LP  +     F  P Y+  L+    G  +        ++G + + 
Sbjct: 218 AITAGSRATALLMILLPPAILVFFIFRDPDYLASLMASNWGRFITIAGVILEIVGAIWIL 277

Query: 181 LMIN 184
            ++N
Sbjct: 278 KILN 281


>gi|167581956|ref|ZP_02374830.1| pilus assembly protein, putative [Burkholderia thailandensis TXDOH]
          Length = 219

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 115/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 32  RMLIARFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 91

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  + + + +    + L + SFF   +++Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 92  GADMKDVLEQQAARLQLADFSFFGVCLTLQRETGGNLTETLENLSGIIRARRDIRMKTRA 151

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+ +L +   GH +L +A   + IG+ ++R 
Sbjct: 152 LTAEGRIASKIIAAVPFAIAAFLFVVNRPYIELLFHTRAGHKMLILAVVLLTIGLAMIRK 211

Query: 182 MINFD 186
           + N D
Sbjct: 212 IANLD 216


>gi|304311187|ref|YP_003810785.1| type II secretion system protein F [gamma proteobacterium HdN1]
 gi|301796920|emb|CBL45133.1| type II secretion system protein F [gamma proteobacterium HdN1]
          Length = 295

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 95/187 (50%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  + K R+ KF+   P+AL  +  ++++GL +  ++  +V    +P+  EF +V+    
Sbjct: 109 LLEMKKNRSDKFVKQMPDALAAMSTALKSGLNLVKSLQQVVRNQPEPLAQEFAQVLVEYR 168

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G  L++S   + + +   EV   ++ I +   +GGNL+    NL+  LR+   ++ K++
Sbjct: 169 IGTDLNDSFGDLAKRIDRPEVVLMNSAIRINRSVGGNLAATFENLADSLRETSKVEGKIK 228

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++    +   +  ++P  V+ + +      M +L +   G + LG+      +G+  ++
Sbjct: 229 AMTAMGSSQGKLALAVPIVVALVFFQQERAAMEMLFHTKLGWIWLGMMVFSAFLGMTFIK 288

Query: 181 LMINFDV 187
            ++N DV
Sbjct: 289 KIVNVDV 295


>gi|171921005|gb|ACB59188.1| TadB [Actinobacillus suis ATCC 33415]
          Length = 295

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 79/179 (44%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++    F + FP  + ++  +  +G+ +  A+       + P+  EF  + +    G   
Sbjct: 114 RRNKKLFNEKFPEVIQVLNSATSSGISLLQALERCGKDITGPIGEEFSIIYKRLARGEDA 173

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
                      P +E  FF ++I      GG + E ++ L R + D   M+ K +A++ E
Sbjct: 174 MAVFHDSYSRYPYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAMTSE 233

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           A+ SA I+   P      +  T+P   + ++NDP G ++L       L+G+ ++  ++ 
Sbjct: 234 ARMSAAIVACFPVAFFLFMKVTTPENFDFVVNDPNGRIILYYVVGSELLGMFIIWWLMR 292


>gi|218708111|ref|YP_002415732.1| putative bacterial type II secretion system protein F [Vibrio
           splendidus LGP32]
 gi|218321130|emb|CAV17080.1| putative bacterial type II secretion system,protein F, TadB [Vibrio
           splendidus LGP32]
          Length = 306

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 90/182 (49%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           HL K+   +F + FP+AL+++  S+ AG  +   +  +  +    V  EF+ + E  +LG
Sbjct: 122 HLQKREKKRFEETFPDALNMLASSLSAGESIGRGIGYVGKKLEGEVGKEFKLMSERLNLG 181

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             + +   +  R  P     FF   +    Q GG L E ++ L+R + + + ++ K  AL
Sbjct: 182 EPIDDVFRKSCRRFPYPSFHFFVITLRANMQRGGQLKEVMSRLNRQMFEARAVERKKFAL 241

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ SA I+G+ PF    ++ F SP     +++ P G  +L        IG++++  +
Sbjct: 242 TSEARISAKIVGATPFFFLFILQFLSPENFEFVMHHPEGRPILYYLITSESIGMLIIWAL 301

Query: 183 IN 184
           + 
Sbjct: 302 MK 303


>gi|77456873|ref|YP_346378.1| type II secretion system protein [Pseudomonas fluorescens Pf0-1]
 gi|77380876|gb|ABA72389.1| putative Flp pilus assembly protein TadB [Pseudomonas fluorescens
           Pf0-1]
          Length = 293

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/182 (29%), Positives = 98/182 (53%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
              ++R  + ++  P  LD  VRS+++G  ++DAV   +  S DP++    RV     LG
Sbjct: 110 WRYQRRLRRMIEQLPQLLDHTVRSLKSGRTLADAVLGAIDASEDPLKHAMGRVQRNVQLG 169

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +SL E++  +       E+  F+  + V  + GGN SE L NL R++R+R     +++A+
Sbjct: 170 VSLPEAVGDVAELYEKDELRLFAVGLKVNHRYGGNASELLENLIRMIRERDQASRQLRAM 229

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E + +AW++G LP  ++     ++P Y+  + ND  G M+L  A    +IG +++  M
Sbjct: 230 TGETRITAWVLGLLPVGLAGYFLLSNPKYLIAMWNDHSGQMMLASAFGLQVIGSLLLWRM 289

Query: 183 IN 184
           + 
Sbjct: 290 LR 291


>gi|167620120|ref|ZP_02388751.1| pilus assembly protein, putative [Burkholderia thailandensis Bt4]
          Length = 217

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 115/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 30  RMLIARFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 89

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  + + + +    + L + SFF   +++Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 90  GADMKDVLEQQAARLQLADFSFFGVCLTLQRETGGNLTETLENLSGIIRARRDIRMKTRA 149

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+ +L +   GH +L +A   + IG+ ++R 
Sbjct: 150 LTAEGRIASKIIAAVPFAIAAFLFVVNRPYIELLFHTRAGHKMLILAVVLLTIGLAMIRK 209

Query: 182 MINFD 186
           + N D
Sbjct: 210 IANLD 214


>gi|327539549|gb|EGF26159.1| type II secretion system protein [Rhodopirellula baltica WH47]
          Length = 314

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 89/179 (49%), Gaps = 3/179 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  +     P    +I R+VR+G  V+ A+ +I      P+R EF    E Q LG+    
Sbjct: 138 RNQQLSRQLPEVFQLISRAVRSGQTVTSALQMIAEDCPSPIREEFALCYEQQELGMWREL 197

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +  ++     + E+  F   + VQ++ GG+L E L NLS+++  R  ++ +++AL+ E +
Sbjct: 198 AFRKLAERNQVMELRIFVVALLVQNRSGGDLVELLDNLSKMVTKRLRLRDRIKALTAEGR 257

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
             A ++  LPF     +   SP Y   L+  PR   LL        IG +++R ++NF+
Sbjct: 258 MQALVLVVLPFVALGAIVLFSPEYAETLLERPR---LLVATGVSQGIGALLIRRIVNFE 313


>gi|261251277|ref|ZP_05943851.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
 gi|260938150|gb|EEX94138.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
          Length = 304

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 93/182 (51%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L +++  KF  +FP+AL+I+  ++ +G  +  A   +  Q ++ V +EF+ + E   +G
Sbjct: 120 KLKQRQEEKFKTNFPDALNILSGAISSGQSIVHAFEYVGKQLNNEVGNEFKFMAERLLIG 179

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
               + + R     P  E  FF++ I +    GG L + +  ++R++ D + ++ K  AL
Sbjct: 180 EDPDDVLERSATTFPYLEYFFFASTIRINLSRGGQLKDVINRINRLMFDSRAVEKKKNAL 239

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ASA II  LP     ++ FTSP   + ++ +P G  +         IG + + L+
Sbjct: 240 TSEARASAKIIACLPVIFLVILKFTSPENYSFVMFEPGGQPIFYYVLISEFIGFVCIWLI 299

Query: 183 IN 184
           + 
Sbjct: 300 LR 301


>gi|221066736|ref|ZP_03542841.1| type II secretion system protein [Comamonas testosteroni KF-1]
 gi|220711759|gb|EED67127.1| type II secretion system protein [Comamonas testosteroni KF-1]
          Length = 317

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 79/186 (42%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   + KR  + L   P+ LD +VR +  G     A  + V     P+    ++   +  
Sbjct: 132 LWRRLSKRREQLLQQLPSFLDNMVRLITIGNSPHAAFQLAVVNVPAPLGDALQQASASLR 191

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
               L  ++  + R   L E    + V  + ++ GG   + L  +S  +RDR++ + ++ 
Sbjct: 192 ASPDLGHAMGLLERSWRLSEFGLLAAVFRMSTRYGGRADQVLERVSAYIRDRQSAERELH 251

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E + SAWI+  LP  V  L+   + GY   +  D  G  ++  AA    +G   + 
Sbjct: 252 ALSAEVRLSAWILALLPVAVGGLIMILNQGYFMTMWQDETGRKMVLGAAGLEALGSFFLY 311

Query: 181 LMINFD 186
            +    
Sbjct: 312 RLARLK 317


>gi|218676253|ref|YP_002395072.1| putative Flp pilus assembly protein TadB [Vibrio splendidus LGP32]
 gi|218324521|emb|CAV25998.1| putative Flp pilus assembly protein TadB [Vibrio splendidus LGP32]
          Length = 304

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 89/183 (48%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
             L +++   F  +FP+AL+I+  ++ +G  +  A   +  Q  + V  EF+ + E   +
Sbjct: 119 SKLKQRQMNSFKTNFPDALNILSGAISSGQSIIHAFEYVGKQLDNDVGKEFKLMAERLLI 178

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G    + + R     P  E  FF++ I +    GG L + +  ++R++ D + ++ K  A
Sbjct: 179 GEDPDDVLERSSNTFPYLEYFFFASTIRINLARGGQLKDVINKINRLMFDSRAVEKKKNA 238

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ EA+ASA II  LP     ++ FTSP   + ++ +  G  +        L+G   + L
Sbjct: 239 LTSEARASAKIIACLPVIFLIILKFTSPENYSFVMFEEAGQPIFYYVLVSELLGFFCIWL 298

Query: 182 MIN 184
           ++ 
Sbjct: 299 ILR 301


>gi|86147188|ref|ZP_01065504.1| TadB-like protein involved in pilus formation and/or protein
           secretion [Vibrio sp. MED222]
 gi|85835072|gb|EAQ53214.1| TadB-like protein involved in pilus formation and/or protein
           secretion [Vibrio sp. MED222]
          Length = 306

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 90/182 (49%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           HL K+   +F + FP+AL+++  S+ AG  +   +  +  +    V  EF+ + E  +LG
Sbjct: 122 HLQKREKKRFEETFPDALNMLASSLSAGESIGRGIGYVGKKLEGEVGKEFKLMSERLNLG 181

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             + +   +  R  P     FF   +    Q GG L E ++ L+R + + + ++ K  AL
Sbjct: 182 EPIDDVFRKSCRRFPYPSFHFFVITLRANMQRGGQLKEVMSRLNRQMFEARAVERKKFAL 241

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ SA I+G+ PF    ++ F SP     +++ P G  +L        IG++++  +
Sbjct: 242 TSEARISAKIVGATPFFFLFILQFLSPENFEFVMHHPEGRPILYYLITSESIGMLIIWAL 301

Query: 183 IN 184
           + 
Sbjct: 302 MK 303


>gi|227326305|ref|ZP_03830329.1| putative type IV pilus protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 326

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 54/183 (29%), Positives = 98/183 (53%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +  ++K      +  P A+D I RS RAG+PV++  +++    + P+ +EF+ +     L
Sbjct: 141 RSTLQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTGPLANEFKTIDHWLRL 200

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ L + I      +P+ E  FF  ++ +  + GG L E L  LS  LR+R+ ++ KVQ+
Sbjct: 201 GIPLRQVIQASATRVPMSEYRFFVVILIINQEAGGRLGETLERLSATLRERRELQLKVQS 260

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            + EA+ASA I+ +L       +Y  SP   + L +DP G  +L  A   + +G+++  +
Sbjct: 261 KTSEARASAKIVAALFPGCLAYLYMKSPEDFSFLFSDPVGTTVLIYALCSVSVGMLITHV 320

Query: 182 MIN 184
           M+ 
Sbjct: 321 MVK 323


>gi|114321308|ref|YP_742991.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227702|gb|ABI57501.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 294

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 87/184 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R        P  ++ I+RS++AG  +S AVA    +   PV    +RV     
Sbjct: 109 VYWRGQRRLRAMEAQLPGFVEHIIRSLQAGRTLSVAVAAATREMRPPVAEVMQRVQREVD 168

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G SLS+++        +  +   +  + +  + GG+  + +  +  +LR R+  + +++
Sbjct: 169 MGASLSDALQGAADIYRVDALQLVAIGVRINLRYGGSAIQLMEQVVTLLRQRERARRELK 228

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + SA ++  LP  V       +P Y   ++    G  LLG A A+ ++GI ++ 
Sbjct: 229 AMTGETRISAGVLAILPVGVGGYTVMMNPDYYATMLESTVGVWLLGGAMAWQVLGIFLIW 288

Query: 181 LMIN 184
            M+ 
Sbjct: 289 RMVK 292


>gi|251789650|ref|YP_003004371.1| type II secretion system protein [Dickeya zeae Ech1591]
 gi|247538271|gb|ACT06892.1| type II secretion system protein [Dickeya zeae Ech1591]
          Length = 325

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 96/183 (52%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +  ++K   +  +  P+A+D I RS RAG+PV++    +    S P+ +EFR +     L
Sbjct: 140 RSTLQKHLHQLRESLPDAIDAITRSCRAGVPVANTFGQVAAHLSGPLANEFRLIDHWLKL 199

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ L + I      +P+ E  FF  ++ +  + GG L E L  LS  LR R+ +  KVQ+
Sbjct: 200 GVPLRQVIQTSAGRVPMAEYRFFVVILIINQEAGGRLGETLERLSATLRQRRELALKVQS 259

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            + EA+ASA I+ +L       +Y  SP   + L NDP G  +L  A   + +G+++  L
Sbjct: 260 KTSEARASAKIVAALFPGCLGYMYLKSPEDFDFLFNDPVGSTVLVYALCSVTLGMVITHL 319

Query: 182 MIN 184
           M+ 
Sbjct: 320 MVK 322


>gi|118581109|ref|YP_902359.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
 gi|118503819|gb|ABL00302.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
          Length = 321

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 105/179 (58%), Gaps = 1/179 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + ++ KKR + F +  P+AL +I RS+RAG  ++ AV ++  ++ +P+   FR   E Q 
Sbjct: 134 VSNVRKKRYSSFTEQLPDALTMIARSLRAGHSLTSAVELVGSETPEPLGGLFRAAYEQQK 193

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGL +++++  M++ M   ++ FF TVI++ ++ GGNLSE L  L+  +R+R  ++ +VQ
Sbjct: 194 LGLRITDALGGMLQRMDSLDLRFFVTVITIHAESGGNLSEILDKLAATIRERIKLRRQVQ 253

Query: 121 ALSMEAKASAWIIGSLPFCVSTLV-YFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             + + + S +I+ +LP      + Y   PGY +V + + +GH  +  A    +IG + 
Sbjct: 254 VYTAQGRMSGYILVALPIFAFFFLQYVMLPGYEDVFMKETKGHYAIAYAIISQIIGFLF 312


>gi|261867451|ref|YP_003255373.1| TadB [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412783|gb|ACX82154.1| TadB [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 295

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 75/178 (42%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +    F   FP  + I+  +  +G  +  A+       +  +  EF+ + +   +G    
Sbjct: 115 RNKKTFNAMFPEVIQILNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRIAIGEDPV 174

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
                     P +E  FF T++      GG + E ++ L R++ D   M+ K +A++ EA
Sbjct: 175 SVFEDSYDRYPYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEA 234

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + SA I+   P      + F  P   + LINDP G  +L       L G+ ++  ++ 
Sbjct: 235 RMSAIIVACFPVGFFFFMQFAMPENFDFLINDPTGRYVLYYVFGSELFGMGIIWWLMR 292


>gi|317489755|ref|ZP_07948254.1| hypothetical protein HMPREF1023_01953 [Eggerthella sp. 1_3_56FAA]
 gi|316911101|gb|EFV32711.1| hypothetical protein HMPREF1023_01953 [Eggerthella sp. 1_3_56FAA]
          Length = 322

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 83/187 (44%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ +  KR     +  P+AL  +    +AGL +      +  +   P+ + F R      
Sbjct: 135 LRTVQDKRRDALREGIPDALRSMAVCFQAGLSLLQTFQQVASEVQGPLGTLFARAAHQLE 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G     ++  + R   + E++F +  + VQ Q GG++ + L      ++    ++  ++
Sbjct: 195 TGEGAGRALEVLRRGSSVAELAFVAVALDVQHQAGGSMKQVLDAARDTVQSEIELRRALR 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             + +AK SA ++  LPF +  +    S G+++     P G  LL +A      GI+ +R
Sbjct: 255 VQTAQAKLSARVVSVLPFVLIAVFSLVSEGFLDPFFASPMGMALLAIALGMQAAGIVAVR 314

Query: 181 LMINFDV 187
            M+  +V
Sbjct: 315 RMLAVEV 321


>gi|209546005|ref|YP_002277895.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209538862|gb|ACI58795.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 287

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 88/187 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++ +++R  +     P A+D IV +VR G P++ AV  +      P   EF R+   Q 
Sbjct: 101 IRYFLQRRWLQIESQLPYAVDQIVSAVRTGKPLAVAVNAVADTGQMPASREFERIAREQK 160

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L E++ R  R +P          + + ++ GG++SE L  +S+  ++   +  K+ 
Sbjct: 161 LGIGLVEALDRHGRTVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKIT 220

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             S +A+ +  ++      +  +++F  P  ++ +  +  G ++  V A     G   MR
Sbjct: 221 TSSSQARMNFRVVNGGALFMILMIFFGQPELIDKVFGNAIGIVIAIVGAILYATGFFWMR 280

Query: 181 LMINFDV 187
            M+   V
Sbjct: 281 SMMKVSV 287


>gi|293391328|ref|ZP_06635662.1| Flp pilus assembly protein TadB [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|32452627|gb|AAP43989.1| TadB [Aggregatibacter actinomycetemcomitans]
 gi|290951862|gb|EFE01981.1| Flp pilus assembly protein TadB [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 295

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 75/178 (42%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +    F   FP  + I+  +  + + +  A+       +  +  EF+ +     +G   +
Sbjct: 115 RNKKTFNAMFPEVIQILNAAATSSVGLLQALERCGKDLTGQLGQEFKSIHRRLSIGEDPA 174

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
                     P +E  FF T+I      GG + E ++ L R++ D   M+ K +A++ EA
Sbjct: 175 TVFDDSYDRYPYKEFYFFITIIRNNLNKGGQIREVISRLGRVIADSNKMEKKKKAMTSEA 234

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + SA I+   P      + F  P   + L+NDP G  +L       L G+ ++  ++ 
Sbjct: 235 RMSAIIVACFPVGFFFFMQFAMPENFDFLVNDPTGRYVLYYVFGSELFGMGIIWWLMR 292


>gi|323700364|ref|ZP_08112276.1| Type II secretion system F domain [Desulfovibrio sp. ND132]
 gi|323460296|gb|EGB16161.1| Type II secretion system F domain [Desulfovibrio desulfuricans
           ND132]
          Length = 324

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 100/175 (57%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   +KR  +F    P ALD++ R+++AG      + ++  +   P+  EF + ++  +
Sbjct: 138 LQGKKRKRMDRFQKQLPEALDLMARALKAGHTFGGGMRMVADEFDGPIGPEFGKTLDEIN 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++S +   +   ++ FF   +++Q + GGNL+E +A ++ ++R+R  +  K++
Sbjct: 198 YGMDVDRALSNLQSRVDCPDLKFFVVSVNIQRETGGNLAEIIAKIAALVRERFALFGKIR 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
            LS E + SA+I+ +LPF ++ ++Y  +  Y+++L     G  ++  AA  M+IG
Sbjct: 258 VLSAEGRVSAYILIALPFLLTGILYVVNSDYISLLWTRELGQNMVWGAAISMIIG 312


>gi|253687072|ref|YP_003016262.1| type II secretion system protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753650|gb|ACT11726.1| type II secretion system protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 326

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 54/183 (29%), Positives = 98/183 (53%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +  ++K      +  P A+D I RS RAG+PV++  +++    + P+ +EF+ +     L
Sbjct: 141 RSTLQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTGPLANEFKTIDHWLRL 200

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ L + I      +P+ E  FF  ++ +  + GG L E L  LS  LR+R+ ++ KVQ+
Sbjct: 201 GIPLRQVIQASATRVPMSEYRFFVVILIINQEAGGRLGETLERLSATLRERRELQLKVQS 260

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            + EA+ASA I+ +L       +Y  SP   + L +DP G  +L  A   + +G+++  +
Sbjct: 261 KTSEARASAKIVAALFPGCLAYLYMKSPDDFSFLFSDPVGTSVLIYALCSVSVGMLITHV 320

Query: 182 MIN 184
           M+ 
Sbjct: 321 MVK 323


>gi|257790306|ref|YP_003180912.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|325830204|ref|ZP_08163661.1| type II secretion system protein F domain protein [Eggerthella sp.
           HGA1]
 gi|257474203|gb|ACV54523.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|325487671|gb|EGC90109.1| type II secretion system protein F domain protein [Eggerthella sp.
           HGA1]
          Length = 322

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 83/187 (44%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ +  KR     +  P+AL  +    +AGL +      +  +   P+ + F R      
Sbjct: 135 LRTVQDKRRDALREGIPDALRSMAVCFQAGLSLLQTFQQVASEVQGPLGTLFARAAHQLE 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G     ++  + R   + E++F +  + VQ Q GG++ + L      ++    ++  ++
Sbjct: 195 TGEGAGRALEVLRRGSSVAELAFVAVALDVQHQAGGSMKQVLDAARDTVQSEIELRRALR 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             + +AK SA ++  LPF +  +    S G+++     P G  LL +A      GI+ +R
Sbjct: 255 VQTAQAKLSARVVSVLPFVLIAVFSLVSEGFLDPFFASPMGMALLAIALGMQAAGIVAVR 314

Query: 181 LMINFDV 187
            M+  +V
Sbjct: 315 RMLAVEV 321


>gi|42521750|ref|NP_967130.1| hypothetical protein Bd0110 [Bdellovibrio bacteriovorus HD100]
 gi|39574280|emb|CAE77784.1| TadB [Bdellovibrio bacteriovorus HD100]
 gi|51468908|emb|CAE47781.1| flp pilus assembling protein [Bdellovibrio bacteriovorus]
          Length = 291

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 96/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ + ++R  KF+D   + L I+   ++AG    +++  +V    +P+  EF +V+    
Sbjct: 105 VRMIYEQRCTKFVDQMVDGLTIMANGIKAGSNPQESMKRVVEIMGNPMSQEFAQVLYQMQ 164

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S   +++ +   +P  +V  F T I++  + GGNL+E    +  ++R+R+ ++ K+Q
Sbjct: 165 VGDSFESALNDLGNRIPRPDVQMFVTSINILKETGGNLAETFQTIVLVVRERQKVEKKIQ 224

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ +      I+  +PF +  +     P ++  + N   G +LL       +IG ++++
Sbjct: 225 ALTAQGMMQGIIVTLIPFILMAVFLVIDPAFIKPMFNTTLGLVLLAAMLGLQIIGGVLIK 284

Query: 181 LMINFDV 187
            ++   V
Sbjct: 285 KLVTIKV 291


>gi|295395664|ref|ZP_06805856.1| possible integral membrane protein [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971480|gb|EFG47363.1| possible integral membrane protein [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 308

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 83/186 (44%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L +++ AKF    P    I+  S  AGL +  A+ V   +  DP   EF  +     
Sbjct: 122 LDVLKERQRAKFFQQLPEFARIMANSTGAGLSIHTALGVAASELPDPASREFSALKRELE 181

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G  L  ++ RM   +  +++    + + +  + GG+L  +L N+S  L  RK  K +V+
Sbjct: 182 IGTPLDIALERMSERISGRDLDVLVSTLVIAQRSGGSLISSLRNMSDTLEFRKETKREVK 241

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L  ++  + +++ +       L+   + G +  L +   G + + +A     IG++ + 
Sbjct: 242 TLVSQSSYTGYLVVAFGVGFVLLLASFNDGLLLKLTSTIIGQIAIVIATVCYAIGLVAIN 301

Query: 181 LMINFD 186
            ++   
Sbjct: 302 RLVKVK 307


>gi|50119738|ref|YP_048905.1| putative type IV pilus protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610264|emb|CAG73707.1| putative type IV pilus protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 326

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 55/183 (30%), Positives = 97/183 (53%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +  ++K      +  P A+D I RS RAG+PV++  +++    + P+ +EF+ +     L
Sbjct: 141 RSTLQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLAGPLANEFKTIDHWLKL 200

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ L + I      +P+ E  FF  ++ +  + GG L E L  LS  LRDR+ ++ KVQ+
Sbjct: 201 GIPLRQVIQASATRVPMAEYRFFVVILIINQEAGGRLGETLERLSATLRDRRELQLKVQS 260

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            + EA+ASA I+  L       +Y  SP   + L +DP G  +L  A   + +G+++  +
Sbjct: 261 KTSEARASAKIVAMLFPGCLAYLYMKSPDDFSFLFSDPVGTTVLIYALCSVSVGMLITHV 320

Query: 182 MIN 184
           M+ 
Sbjct: 321 MVK 323


>gi|76663417|emb|CAE47793.1| flp pilus assembling protein [Bdellovibrio bacteriovorus]
          Length = 291

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 97/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ + +KR A+F+D   + L I+   ++AG    +++  +V    +P+  EF +V+    
Sbjct: 105 VRMIYEKRCARFVDQMVDGLTIMANGIKAGSNPQESMKRVVEIMGNPMSQEFAQVLYQMQ 164

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S   +++ +   +P  +V  F T I++  + GGNL+E    +  ++R+R+ ++ K+Q
Sbjct: 165 VGDSFESALNDLGNRIPRPDVQMFVTSINILKETGGNLAETFQTIVLVVRERQKVEKKIQ 224

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ +      I+  +PF +  +     P ++  + +   G +LL       +IG ++++
Sbjct: 225 ALTAQGLMQGIIVTLIPFILMVVFSIIDPTFIKPMFSTTLGLVLLVAMLGLQIIGGVLIK 284

Query: 181 LMINFDV 187
            ++   V
Sbjct: 285 KLVTIKV 291


>gi|149200851|ref|ZP_01877826.1| type II secretion system protein [Roseovarius sp. TM1035]
 gi|149145184|gb|EDM33210.1| type II secretion system protein [Roseovarius sp. TM1035]
          Length = 322

 Score =  101 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 101/187 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR A   +  P+A++++VRS+R G P S A+ ++  +  DP+ +EF  + +   
Sbjct: 136 ISMKASKRMALLEEQLPDAIELMVRSLRVGHPFSSAIGIVATEVGDPLATEFGIIADEAA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   + +Q++ F +  +++Q Q GGNL+E LA L++++R R  +  +V+
Sbjct: 196 YGRDMGEALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAQVIRARFRLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EAK S   + + P      +    P Y +  +  P     + V   F+++ ++VMR
Sbjct: 256 AITAEAKWSGKFLSAFPLLALVGIQLLKPDYYDEAMEHPFFIPAVLVVGVFLVLNLIVMR 315

Query: 181 LMINFDV 187
            +++  V
Sbjct: 316 ALVSIKV 322


>gi|307548791|dbj|BAJ19113.1| TadB [Aggregatibacter actinomycetemcomitans]
 gi|307548806|dbj|BAJ19127.1| TadB [Aggregatibacter actinomycetemcomitans]
          Length = 295

 Score =  101 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 75/178 (42%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +    F   FP  + I+  +  +G  +  A+       +  +  EF+ + +   +G    
Sbjct: 115 RNKKTFNAMFPEVIQILNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRIAIGEDPV 174

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
                     P +E  FF T++      GG + E ++ L R++ D   M+ K +A++ EA
Sbjct: 175 SVFEDSYDRYPYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEA 234

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + SA I+   P      + F  P   + LINDP G  +L       L G+ ++  ++ 
Sbjct: 235 RMSAIIVACFPVGFFFFMQFAMPENFDFLINDPTGRYVLYYVFGSELFGMGIIWWLMR 292


>gi|307133500|dbj|BAJ19012.1| TadB [Aggregatibacter actinomycetemcomitans]
          Length = 295

 Score =  101 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 75/178 (42%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +    F   FP  + I+  +  +G  +  A+       +  +  EF+ + +   +G    
Sbjct: 115 RNKKTFNAMFPEVIQILNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRIAIGEDPV 174

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
                     P +E  FF T++      GG + E ++ L R++ D   M+ K +A++ EA
Sbjct: 175 SVFEDSYDRYPYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEA 234

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + SA I+   P      + F  P   + LINDP G  +L       L G+ ++  ++ 
Sbjct: 235 RMSAIIVACFPVGFFFFMQFAMPENFDFLINDPTGRYVLYYVFGSELFGMGIIWWLMR 292


>gi|125973853|ref|YP_001037763.1| Flp pilus assembly protein TadB-like protein [Clostridium
           thermocellum ATCC 27405]
 gi|256004307|ref|ZP_05429289.1| Flp pilus assembly protein TadB-like protein [Clostridium
           thermocellum DSM 2360]
 gi|281418015|ref|ZP_06249035.1| Type II secretion system F domain protein [Clostridium thermocellum
           JW20]
 gi|125714078|gb|ABN52570.1| Flp pilus assembly protein TadB-like protein [Clostridium
           thermocellum ATCC 27405]
 gi|255991741|gb|EEU01841.1| Flp pilus assembly protein TadB-like protein [Clostridium
           thermocellum DSM 2360]
 gi|281409417|gb|EFB39675.1| Type II secretion system F domain protein [Clostridium thermocellum
           JW20]
 gi|316939949|gb|ADU73983.1| Type II secretion system F domain [Clostridium thermocellum DSM
           1313]
          Length = 268

 Score =  101 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 84/193 (43%), Gaps = 7/193 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFRR 54
           K +I+KR ++    F + L  I  S+ AG  V  A    +             +  E   
Sbjct: 76  KDIIEKRKSELNLQFKDLLYSISASLTAGKSVETAFKEALNDLCILYPDPDTYIIREVEY 135

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           ++    +  ++ +++  + +   L+++  F+ V     + GGNL   + N + I+ D+  
Sbjct: 136 IVRRLEMNETIEDALEDLAKRSHLEDIQNFTDVFKTCKRTGGNLVNVIRNSTNIINDKIE 195

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +K ++  L    K    ++  +PF +  ++  T+  YM  + +   G +++  A   + I
Sbjct: 196 IKEEINTLLAAKKFEQKVLSVMPFIMILILSLTTEDYMAPVFDTIVGRIVMTFAIIIIAI 255

Query: 175 GIMVMRLMINFDV 187
           G  V + +++  +
Sbjct: 256 GYFVSKKIMDIKI 268


>gi|10334986|gb|AAD38173.2|AF152598_2 TadB [Aggregatibacter actinomycetemcomitans]
 gi|26000716|gb|AAN75212.1| TadB [Aggregatibacter actinomycetemcomitans]
          Length = 295

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 75/178 (42%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +    F   FP  + I+  +  +G  +  A+       +  +  EF+ + +   +G    
Sbjct: 115 RNKKTFNAMFPEVIQILNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRIAIGEDPV 174

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
                     P +E  FF T++      GG + E ++ L R++ D   M+ K +A++ EA
Sbjct: 175 SVFEDSYDRYPYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEA 234

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + SA I+   P      + F  P   + LINDP G  +L       L G+ ++  ++ 
Sbjct: 235 RMSAIIVACFPVGFFFFMQFAMPENFDFLINDPTGRYVLYYVFGSELFGMGIIWWLMR 292


>gi|148261009|ref|YP_001235136.1| type II secretion system protein [Acidiphilium cryptum JF-5]
 gi|326404409|ref|YP_004284491.1| putative type II secretion system protein [Acidiphilium multivorum
           AIU301]
 gi|146402690|gb|ABQ31217.1| type II secretion system protein [Acidiphilium cryptum JF-5]
 gi|325051271|dbj|BAJ81609.1| putative type II secretion system protein [Acidiphilium multivorum
           AIU301]
          Length = 319

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 62/178 (34%), Positives = 98/178 (55%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R    L+ FP+AL  IVR VR G+PV +A+ V+      P   EF R+ +   +G  L 
Sbjct: 138 RRATALLNQFPDALATIVRCVRVGIPVQEALRVVSQDMPAPTSREFGRIADQVAIGTPLE 197

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++ +M     L E  FF+T IS+Q++ GG L++ L  L+ ++R R  MKA+  AL+ EA
Sbjct: 198 LALRQMADRAHLAEYGFFATAISLQARYGGGLAQTLEGLAEVIRKRVAMKARGYALASEA 257

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + SA I+G +P   +  +    P Y+ VL     G+++L  A   +  G +VMR +I 
Sbjct: 258 RTSALILGIIPLVAALAIEVIQPAYLRVLFVTHGGNIVLAAAVGLLAGGALVMREIIR 315


>gi|170696832|ref|ZP_02887932.1| type II secretion system protein [Burkholderia graminis C4D1M]
 gi|170138260|gb|EDT06488.1| type II secretion system protein [Burkholderia graminis C4D1M]
          Length = 356

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 80/186 (43%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           M     +R    +   P+ LD IVR +  G  V  A    +  +  P+R     V     
Sbjct: 170 MSMRASRRRQAIVRQLPSFLDGIVRLITLGNSVPAAFQASLQTTEAPLRECLDHVSRMLR 229

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++S +      +E+     V+ +  + GG     L  +S  +RD +  + ++ 
Sbjct: 230 SGVEIDRALSHVAVLYGARELELVGAVLRLSVKYGGRADVMLDRMSSFMRDLEQAERELV 289

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + S+W++G LP  +   +  T+P Y   +  DP G  +L +A A  L G  ++ 
Sbjct: 290 AMSSETRLSSWVLGMLPVGIGGFLILTNPRYFGSMWFDPGGRQILYLAFALQLTGAYLLY 349

Query: 181 LMINFD 186
            +    
Sbjct: 350 RLARLK 355


>gi|302536566|ref|ZP_07288908.1| integral membrane protein [Streptomyces sp. C]
 gi|302445461|gb|EFL17277.1| integral membrane protein [Streptomyces sp. C]
          Length = 312

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 88/187 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     +RT +F++  P    I+  + +AGL +  A+ +   +   P   E  RV +   
Sbjct: 126 LNWQRARRTERFINQLPELARILANATQAGLALRTAIGIAAEELEAPAGEELSRVADRLA 185

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S+ E++  +V  +P +E+    + + + ++ GG +  +L NL+  L  RK  + +++
Sbjct: 186 VGHSIEEALGEIVERLPSRELVVLVSTLVLSARAGGAIVGSLRNLTVTLEQRKETRREIR 245

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +   +A+++ ++      LV    PG ++ +     G   + +A     +G +++R
Sbjct: 246 TQLSQVTVTAYLVPAIGLGSLLLVDLMMPGALDRMTGAWIGQTAVLIALGLFTLGFVLIR 305

Query: 181 LMINFDV 187
            +   DV
Sbjct: 306 RLSKIDV 312


>gi|52425831|ref|YP_088968.1| MaoC protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307883|gb|AAU38383.1| MaoC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 293

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 79/179 (44%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++   +F + FP  + I+  +  +G  +  A+       S  +  EF  + +   +G   
Sbjct: 112 RRNRKEFEEMFPEVIQILNSATSSGAGLLQALERCGKDISGQIGEEFTAIHKRLAIGEDA 171

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           +          P +E  FF T+I V    GG + E +  L R++ D K M+ K  A++ E
Sbjct: 172 NSVFEDSYSRYPYKEYYFFITIIRVNLDKGGQMREVILRLGRVIADSKKMEKKKSAMTSE 231

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           A+ SA I+ S P      + F  P     L+NDP G M+L        +G+ ++  ++ 
Sbjct: 232 ARMSAMIVASFPVAFFIFMKFMMPENFEFLLNDPGGRMILYYVLGSESLGMGIIWWLMR 290


>gi|153811266|ref|ZP_01963934.1| hypothetical protein RUMOBE_01658 [Ruminococcus obeum ATCC 29174]
 gi|149832764|gb|EDM87848.1| hypothetical protein RUMOBE_01658 [Ruminococcus obeum ATCC 29174]
          Length = 247

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 88/192 (45%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE---- 57
           K LI++R  K    F +AL+ +  +V+AG  V +AVA            E   V E    
Sbjct: 56  KGLIRERKRKLNYQFKDALNALSVAVQAGYSVENAVAACSRDLERLYPKETDIVKEFHYI 115

Query: 58  --TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                + + + E +  +     +++V  F+ V     + GG+++  +   +R+L D+ ++
Sbjct: 116 ETQLRVSVPVEELLLSLGDRSGIEDVENFAAVFYTAKRTGGDMNRIIQTSARMLGDKIDV 175

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + +++      KA   I+  +P  +   +  TSPG+++VL  +  G   + +     ++ 
Sbjct: 176 RKEIETTLAAKKAEQMIMSLMPAGIILYLKLTSPGFLSVLYGNLFGMCAMTLCLGIYVLS 235

Query: 176 IMVMRLMINFDV 187
             + R +++ +V
Sbjct: 236 YWLGRRIVDIEV 247


>gi|307261000|ref|ZP_07542682.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|306869302|gb|EFN01097.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
          Length = 199

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 80/179 (44%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++    F + FP  + ++  +  +G+ +  A+       + P+  EF  + +    G  +
Sbjct: 18  RRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFTIIYKRLARGEDV 77

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
                      P +E  FF ++I      GG + E ++ L R + D   M+ K +A++ E
Sbjct: 78  MAVFQDSYSRYPYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAMTSE 137

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           A+ SA I+   P      +  T+P   + ++NDP G ++L       L+G+ ++  ++ 
Sbjct: 138 ARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIWWLMR 196


>gi|86144314|ref|ZP_01062646.1| Flp pilus assembly protein TadB [Vibrio sp. MED222]
 gi|85837213|gb|EAQ55325.1| Flp pilus assembly protein TadB [Vibrio sp. MED222]
          Length = 304

 Score =  100 bits (249), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 91/183 (49%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
            +L  ++  +F  +FP+AL+I+  ++ +G  +  A   +  Q  + V  EF+ + E   +
Sbjct: 119 NNLKARQVERFKTNFPDALNILSGAISSGQSIIHAFEYVGKQLDNEVGKEFKFMAERLLI 178

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G    + + R     P  E  FF++ I +    GG L + +  ++R++ D + ++ K  A
Sbjct: 179 GEDPDDVLERSSNTFPYLEYFFFASTIRINLARGGQLKDVINKINRLMFDSRAVEKKKNA 238

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ EA+ASA II  LP     ++ FTSP   + ++ +  G  +     A  L+G   + L
Sbjct: 239 LTSEARASAKIIACLPVIFLIILKFTSPENYSFVMFEEAGQPIFYYVLASELVGFFCIWL 298

Query: 182 MIN 184
           ++ 
Sbjct: 299 ILR 301


>gi|319783870|ref|YP_004143346.1| type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317169758|gb|ADV13296.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 321

 Score =  100 bits (249), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 99/172 (57%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
             P AL++I R ++AG PV  A+A++  +  DP+ SEF  + +    G  L  +++ +  
Sbjct: 149 QLPEALELITRGLKAGHPVPVAIAMVAREMPDPIGSEFGVIADEVTYGSDLVSALNSLFD 208

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            +  +++  F T +S+Q+  GGNL E L  L+  +R+R  ++ KV+A++ E + SA+I+ 
Sbjct: 209 RVGQEDLPLFVTAVSIQTSSGGNLREILDGLATTIRERGKLRRKVRAIATEGRMSAYILT 268

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           ++P  +   +    PG+ + +  +P+   LLG +  ++++G ++M  M NF 
Sbjct: 269 AVPALLFAAIMALMPGFYSDVWGEPKTWYLLGASITWLMLGNLMMFKMSNFK 320


>gi|167463710|ref|ZP_02328799.1| Flp pilus assembly protein TadB-like protein [Paenibacillus larvae
           subsp. larvae BRL-230010]
 gi|322384398|ref|ZP_08058084.1| hypothetical protein PL1_0930 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150756|gb|EFX44216.1| hypothetical protein PL1_0930 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 304

 Score =  100 bits (249), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 81/191 (42%), Gaps = 8/191 (4%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-------DPVRSEFRRVI 56
           L+++R  +    F  AL  +  S+ AG  V +A    +             +  EF  ++
Sbjct: 115 LMRRRKEEMNQQFKQALQCLSTSLSAGKSVENAFRDTLQDLELLYPDPSAMIVQEFGVMV 174

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
                G  +   I        L++++ F+ V     + GGNL E +   S ++ ++  + 
Sbjct: 175 RRLDNGEPIEACILGFAERAGLEDITNFADVFITCKRTGGNLIEVIRRTSHLISEKLQIV 234

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            ++  +  + K  + I+ + P  +  ++ F+SP YM  L     G +++ +    + + +
Sbjct: 235 QEISVMVAQKKFESKIMLTAPVAIIGILCFSSPDYMKPLYE-GAGRLIMTIGLTVLFLCL 293

Query: 177 MVMRLMINFDV 187
            + + +++  V
Sbjct: 294 WITKKIMDIKV 304


>gi|288956973|ref|YP_003447314.1| type II secretion system [Azospirillum sp. B510]
 gi|288909281|dbj|BAI70770.1| type II secretion system [Azospirillum sp. B510]
          Length = 319

 Score =  100 bits (249), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 76/184 (41%), Positives = 115/184 (62%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L  +RT +FLD  P+A+D++VR+ RAG+PVS+A+     ++ +PVRSEFRRV +   
Sbjct: 133 LGMLTHRRTIRFLDRLPDAIDLVVRASRAGVPVSEAIIAAGRETEEPVRSEFRRVADQVS 192

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L +++ +    + L +  FF   + VQ + GG L+E L NLS ILR RK+M+ KV+
Sbjct: 193 IGVDLKDALRQSSARVRLPDFDFFVVALVVQRETGGQLAETLGNLSDILRKRKDMRLKVK 252

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ E + SA I+ SLPF    L++   P Y+  L  DP GH LL  AAA + +G+ V+ 
Sbjct: 253 ALTAEGRMSANIVASLPFVSGGLIFAVDPTYVLNLFTDPLGHKLLAAAAACLGLGMFVIG 312

Query: 181 LMIN 184
            M  
Sbjct: 313 RMTR 316


>gi|325109818|ref|YP_004270886.1| type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324970086|gb|ADY60864.1| Type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 319

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 94/184 (51%), Gaps = 3/184 (1%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +R     D  P   D++ R++ +G  +S A  ++  Q   P+  EF+   + Q+LG
Sbjct: 138 QRRNQRINTLRDQLPETFDLMSRAIESGQTISGAFQLVSTQCGGPIAKEFQHCCQQQNLG 197

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           L    ++  + R   + E+  F+  + VQ Q GG+ S+ L NL+  +R+R  +  KV+A+
Sbjct: 198 LPYEITLRDLARRTGVMELQMFAVALIVQRQAGGDPSDVLKNLAEAVRNRIKLAMKVKAI 257

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E +A AW++ +LPF     +Y     Y +VL+  P    ++ + A  + +GI  +R +
Sbjct: 258 TSEGRAQAWVLSALPFVSFGGIYLLDRDYASVLLERPN---VMAIMAVSIALGIAWIRQI 314

Query: 183 INFD 186
           +  +
Sbjct: 315 VCIE 318


>gi|161524902|ref|YP_001579914.1| type II secretion system protein [Burkholderia multivorans ATCC
           17616]
 gi|189350348|ref|YP_001945976.1| Flp pilus assembly protein [Burkholderia multivorans ATCC 17616]
 gi|160342331|gb|ABX15417.1| type II secretion system protein [Burkholderia multivorans ATCC
           17616]
 gi|189334370|dbj|BAG43440.1| Flp pilus assembly protein [Burkholderia multivorans ATCC 17616]
          Length = 330

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 85/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R  K +   P+ LD IVR V  G  V  A    +  + +P+R     V     
Sbjct: 145 LASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQSALQTTEEPLRGCLDHVSRMLR 204

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  + +    +E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 205 TGVEIDRAMLHIAKIYRTKEFELLGSVLRLSVKYGGRADVMLERMAIFMRDLEQAERELT 264

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SA+++  LP  + + V  T+P Y+  + NDP G MLL  A    L G + + 
Sbjct: 265 AMSAETRLSAFVLMMLPIAIGSFVVMTNPKYLQGMWNDPSGRMLLTFAFLAQLAGSVWLY 324

Query: 181 LMINFD 186
            M    
Sbjct: 325 RMARLR 330


>gi|326797331|ref|YP_004315151.1| type II secretion system F domain protein [Marinomonas mediterranea
           MMB-1]
 gi|326548095|gb|ADZ93315.1| Type II secretion system F domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 327

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 100/187 (53%), Gaps = 4/187 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           ++ + K   +F  + P A+D IVR V+AG+P ++A  +I      P+  E   + +   L
Sbjct: 141 RNAMGKHLKEFKQNLPQAIDSIVRVVKAGVPATNAFGLIANNLPGPLAKELALIDKWLSL 200

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           GLSL +++      +PL E  FF+ ++ +  + GG LS+ L  LS  LR+R+ +  K++A
Sbjct: 201 GLSLRQAMQDSAIRVPLNEYRFFAVILVINQEAGGRLSDTLERLSETLRERQELALKIRA 260

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI----M 177
            + E +ASA I+  L       +YF SP     L++DP G+ +L  A   +L G+     
Sbjct: 261 KTSEVRASAVIVAMLAPLSLAYMYFNSPKDFQFLLSDPTGNSVLIYAFGSVLTGLAITHF 320

Query: 178 VMRLMIN 184
           +++ +I 
Sbjct: 321 MIKRVIR 327


>gi|241667101|ref|YP_002985185.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862558|gb|ACS60223.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 287

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 88/187 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++ +++R  +     P A+D IV +VR G P++ AV  +      P   EF R+   Q 
Sbjct: 101 IRYFLQRRWLQIESQLPYAVDQIVSAVRTGKPLAIAVNAVADTGQMPASREFERIAREQK 160

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L E++ R  R +P          + + ++ GG++SE L  +S+  ++   +  K+ 
Sbjct: 161 LGIGLVEALDRHGRNVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKIT 220

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             S +A+ +  ++      +  +++F  P  ++ +  +  G ++  V A     G   MR
Sbjct: 221 TSSSQARMNFRVVNGGALFMMLMIFFGQPELIDKVFGNAIGIVIAIVGAILYATGFFWMR 280

Query: 181 LMINFDV 187
            M+   V
Sbjct: 281 SMMKVSV 287


>gi|264680615|ref|YP_003280525.1| type II secretion system protein [Comamonas testosteroni CNB-2]
 gi|262211131|gb|ACY35229.1| type II secretion system protein [Comamonas testosteroni CNB-2]
          Length = 321

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 87/186 (46%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +K  A+     P  LD  VR V  G  V  A  +    + DP++S   +      
Sbjct: 132 LYTRAQKYRARLTQQLPGFLDNTVRLVTIGNSVQAAFQMAAASTKDPLQSVMEKAASLAR 191

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ L  +++ + R   L E+   + ++ +  + GG +   L  ++  +RDR+  +  + 
Sbjct: 192 AGMDLENAVAHVARQTRLDELHLLAAILRISVRYGGRVDLLLERVANFMRDREQAEQDLS 251

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + SAW++  LP  V  L+   +  Y   + +D  G  ++GVAAA  + G++++ 
Sbjct: 252 AMTAETRLSAWVLSLLPVAVCCLIISFNASYFLNMWDDASGRNIIGVAAALQVFGVVLLY 311

Query: 181 LMINFD 186
            +   D
Sbjct: 312 RLAKLD 317


>gi|295107880|emb|CBL21833.1| hypothetical protein [Ruminococcus obeum A2-162]
          Length = 247

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 85/192 (44%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE---- 57
           K LI++R       F +AL+ +  +V+AG  V +AV             E   V E    
Sbjct: 56  KGLIRERKKNLNYQFKDALNALSVAVQAGYSVENAVMACSRDLERLYPQETDIVREFHYM 115

Query: 58  --TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                + + + E +        ++++  F+ V     + GG+++  +   SR+L D+ ++
Sbjct: 116 ETQLKVSVPVEELLMSFGDRSGIEDIENFAAVFYTAKRTGGDMNRIIQTSSRMLGDKIDV 175

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + +++      KA   I+  +P  +   +  TSPG++ VL  +P G + + +      + 
Sbjct: 176 RREIETTLAAKKAEQMIMSLMPAGIILYLKMTSPGFLEVLYGNPFGILAMSLCLGIYGLS 235

Query: 176 IMVMRLMINFDV 187
             + R +++ +V
Sbjct: 236 YWLGRRIVDIEV 247


>gi|148657457|ref|YP_001277662.1| type II secretion system protein [Roseiflexus sp. RS-1]
 gi|148569567|gb|ABQ91712.1| type II secretion system protein [Roseiflexus sp. RS-1]
          Length = 335

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 101/177 (57%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           +F D  P  LD+I  S+R G  +  ++A +     +P R+E RRV +   LGLS+++++ 
Sbjct: 159 EFNDQLPETLDLITASMRGGFSLVQSLASVASDVQEPTRTELRRVFQEVQLGLSVTQALD 218

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            +V+ M   ++    T I + +++GGNL + L N+S  +R+R  ++ +V+ ++   + S+
Sbjct: 219 NLVQRMESADLDLVVTAIKIHARVGGNLGQILENISTTMRERAKLRREVRVITSMQRISS 278

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           ++IG+LPF ++ +++  +P YM  L        +   A    ++G +++R +++  +
Sbjct: 279 YVIGALPFALALIIFTINPTYMMRLFQPGLILCIPIGAFISSVVGFLIIRKIVDVRI 335


>gi|319779647|ref|YP_004130560.1| Flp pilus assembly protein TadB [Taylorella equigenitalis MCE9]
 gi|317109671|gb|ADU92417.1| Flp pilus assembly protein TadB [Taylorella equigenitalis MCE9]
          Length = 281

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 93/186 (50%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K LIKKR  K +  FP+ L  +  ++++G  +  ++ +I   S  P+  EF   +    L
Sbjct: 95  KWLIKKRQKKLIQQFPDFLLSLSNALKSGAGLQHSIKLINETSEKPISQEFALFLHQIRL 154

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S+ ES++ +++  P   +S F T++ V  + GGNL+  L  LS  +R+   +  K+ A
Sbjct: 155 GSSVEESLTVLLQRNPSMNMSQFVTLVKVSYKTGGNLANMLEVLSTNMRENNLLIKKIDA 214

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ +++  +WI+  LP  +  ++   +P   N       G+  L +     + G + M+ 
Sbjct: 215 LTSQSRMQSWIMTLLPIFLLMVLSVVAPNLTNYFWEHKYGYFALALIVIMEIGGFLTMKK 274

Query: 182 MINFDV 187
           ++   V
Sbjct: 275 LMKIRV 280


>gi|261820218|ref|YP_003258324.1| type II secretion system F domain protein [Pectobacterium wasabiae
           WPP163]
 gi|261604231|gb|ACX86717.1| Type II secretion system F domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 326

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/183 (30%), Positives = 98/183 (53%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +  ++K      +  P A+D I RS RAG+PV++  +++    + P+ +EF+ +     L
Sbjct: 141 RSTLQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTGPLANEFKTIDHWLRL 200

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ L + I      +P+ E  FF  ++ +  + GG L E L  LS  LRDR+ ++ KVQ+
Sbjct: 201 GIPLRQVIQASATRVPMAEYRFFVVILIINQEAGGRLGETLERLSATLRDRRELQLKVQS 260

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            + EA+ASA I+ +L       +Y  SP   + L +DP G  +L  A   + +G++V  +
Sbjct: 261 KTSEARASAKIVAALFPGCLAYLYMKSPEDFSFLFSDPVGTSVLIYALCSVSVGMLVTHV 320

Query: 182 MIN 184
           M+ 
Sbjct: 321 MVK 323


>gi|103488239|ref|YP_617800.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
 gi|98978316|gb|ABF54467.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
          Length = 333

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 64/187 (34%), Positives = 103/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L  +R  +    FP ALDI VR +R+G P+  A+ ++  +  DP+ +EF  V +   
Sbjct: 147 ITRLADRRRRRMEQQFPIALDIFVRGLRSGHPIPAALQLLTVEMEDPIGTEFGIVTDEIA 206

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            GL L E+++RM     L ++  F   +SVQ + GGNL+E L NLS+++RDR +M  KV+
Sbjct: 207 FGLDLREALARMAERWGLPDMHMFVVSVSVQMETGGNLAEILENLSKVIRDRASMFMKVR 266

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E + +A I+ +LP      ++ T+P +   +  DP   +  G      L+G   +R
Sbjct: 267 ALSSEGRMTAVILTALPILAFVGLFLTNPVFYLDVATDPIFFIGFGGLILLYLVGFFTIR 326

Query: 181 LMINFDV 187
            MI+  V
Sbjct: 327 RMIDLKV 333


>gi|186473166|ref|YP_001860508.1| type II secretion system protein [Burkholderia phymatum STM815]
 gi|184195498|gb|ACC73462.1| type II secretion system protein [Burkholderia phymatum STM815]
          Length = 275

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 90/187 (48%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  +  +R        P+ L +I   +RAG     A+   V +S  P+  EF  ++    
Sbjct: 89  LSWMRTRRIETLERQLPDMLLMIAGGLRAGASFPIALESAVQESVPPISQEFDLLLREIR 148

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L  ++  + + +P+ +    +  + +  ++GGNL++AL +++  LRD+  M+ K++
Sbjct: 149 LGIDLDVAMRNIEQRIPVPDFMMVTAAVMISREVGGNLAQALESVASTLRDKLQMEGKIR 208

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ + +    ++  LP  +  ++    P  M  L   P G   L V AA  L+G   + 
Sbjct: 209 ALTSQGRMQGIVMTCLPLFLMMVLRAMEPVAMAPLFTSPIGWATLAVVAAMELLGYASIA 268

Query: 181 LMINFDV 187
            ++  +V
Sbjct: 269 RIVRINV 275


>gi|148974881|ref|ZP_01811861.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3]
 gi|145965390|gb|EDK30639.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3]
          Length = 304

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 91/183 (49%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
             L +++  +F  +FP+AL+I+  ++ +G  +  A   +  Q  + V  EF+ + E   +
Sbjct: 119 NKLKQRQMDRFKTNFPDALNILSGAISSGQSIIHAFEYVGKQLDNEVGKEFKFMAERLLI 178

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G +  + + R     P  E  FF++ I +    GG L + +  ++R++ D + ++ K  A
Sbjct: 179 GEAPDDVLERSSNTFPYLEYFFFASTIRINLARGGQLKDVINKINRLMFDSRAVEKKKNA 238

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ EA+ASA II  LP     ++ FTSP   + ++ +  G  +        L+G   + L
Sbjct: 239 LTSEARASAKIIACLPVIFLIILKFTSPENYSFVMFEEAGQPIFYYVLVSELLGFFCIWL 298

Query: 182 MIN 184
           ++ 
Sbjct: 299 ILR 301


>gi|332970973|gb|EGK09947.1| integral membrane protein [Desmospora sp. 8437]
          Length = 315

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 90/187 (48%), Gaps = 1/187 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++        +          ++  +  AGL +   + ++V +   PV+ E  RV+    
Sbjct: 130 LRSRQHIYAQRMDSQLSEVCRLLSSAASAGLSIPQGLRLVVQEMPAPVKIELGRVVREIE 189

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  L  +++ ++  +  Q++  F   + +Q + GG+L++ ++ ++  + +RK +   ++
Sbjct: 190 LGRDLEGALNDLLERIHTQDMKVFINALIIQRRAGGDLAKVMSQMAATMEERKIIHQTIK 249

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ +A+ SA+ +  +   ++ ++     G+ + L     G ++L +     ++G++++R
Sbjct: 250 AVTSQARTSAYALPIISLLIAFMLSKMIDGFYD-LFTTLPGMIVLALFVGLQVLGVVLVR 308

Query: 181 LMINFDV 187
              N  V
Sbjct: 309 KFSNIRV 315


>gi|115358175|ref|YP_775313.1| type II secretion system protein [Burkholderia ambifaria AMMD]
 gi|115283463|gb|ABI88979.1| type II secretion system protein [Burkholderia ambifaria AMMD]
          Length = 325

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 118/185 (63%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L+++   +FL+ FP+A+D+IVR+VRAG+PV+ A++ +   +++PVRS FR + ++  +
Sbjct: 138 RALVERFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRV 197

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ L + +++    + + + SFF+  + +Q + GG+L E L  LS I+R R++++ K +A
Sbjct: 198 GVDLKDVLTQASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + +  II ++PF +   ++  +  Y+ +L +   GH++L +AA  + IG++ +  
Sbjct: 258 LTAEGRITTKIISAVPFVMIGALFLVNRSYVMLLFDTHAGHVMLTIAAVLLTIGLLTINK 317

Query: 182 MINFD 186
           +   D
Sbjct: 318 ISKLD 322


>gi|84385700|ref|ZP_00988731.1| putative TadB [Vibrio splendidus 12B01]
 gi|84379680|gb|EAP96532.1| putative TadB [Vibrio splendidus 12B01]
          Length = 304

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 89/177 (50%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  KF D+FP+AL+I+  ++ +G  +  A   +  Q  + V  EF+++ E   +G    +
Sbjct: 125 REKKFKDNFPDALNILSGALSSGQSIVHAFEYVGTQLDNEVGKEFKKMSERLLIGEDPDD 184

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
            ++R     P  E  FF++ I +    GG L   +  ++RI+ + + ++ K  AL+ EA+
Sbjct: 185 VLARSASTFPYVEYFFFASTIRINLSRGGQLKNVINRINRIMFEARAIEKKKNALTSEAR 244

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +SA II +LP     ++  TSP     ++ +  G  +        LIG  ++ +++ 
Sbjct: 245 SSAKIIAALPVIFMCILKLTSPENYQFVMFEEGGKPIFYYVLISELIGFFLISMILR 301


>gi|170720031|ref|YP_001747719.1| type II secretion system protein [Pseudomonas putida W619]
 gi|169758034|gb|ACA71350.1| type II secretion system protein [Pseudomonas putida W619]
          Length = 293

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 102/184 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L ++R  + ++  P  LD  VRS++AG  ++DAV   +  S +P+RS   RV     
Sbjct: 108 LSWLCRRRVHQLVEQLPALLDYSVRSLKAGRTLNDAVLGGIDGSREPLRSTMTRVRRNVQ 167

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L ++++ +       E+  F+  + +  + GGN SE + NL +++R+R+    +++
Sbjct: 168 LGVPLDDAVNELAELYNQDELRLFAMGLRINQRYGGNTSELMENLIKLIREREQGSRQLK 227

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + +A I+G+LP C+       +P Y+  +  D  G M+L +A A  ++G +V+ 
Sbjct: 228 AMTGETRITAMILGALPLCMVGYFLMANPHYLLTMWQDSSGQMMLLLAFALQVVGCLVLW 287

Query: 181 LMIN 184
            M+ 
Sbjct: 288 RMMR 291


>gi|254381955|ref|ZP_04997318.1| integral membrane protein [Streptomyces sp. Mg1]
 gi|194340863|gb|EDX21829.1| integral membrane protein [Streptomyces sp. Mg1]
          Length = 312

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 85/187 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     +R  +F++  P    I+  + +AGL +  A+ +   +   P   E  RV +   
Sbjct: 126 LNWQRSRRNERFINQLPELARILANATQAGLALRTAIGMAADELEAPAGEELARVADRLA 185

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S+ ES+  +   +P +E+    + + + ++ GG +  +L NL+  L  RK  + +++
Sbjct: 186 IGHSIEESLGEITERLPSRELVVLVSTLVLSARAGGAIVGSLRNLTVTLEQRKETRREIR 245

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +   +A+++  +      LV    PG ++ +     G   + VA     +G +++R
Sbjct: 246 TQLSQVTVTAYLVPVMGLGSLLLVDAMMPGALDRMTGAVIGQTAVLVAIGLFTLGFVLIR 305

Query: 181 LMINFDV 187
            +   DV
Sbjct: 306 RLSKIDV 312


>gi|325108940|ref|YP_004270008.1| type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324969208|gb|ADY59986.1| Type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 323

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 95/161 (59%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
             P+AL+++ R++R+G  ++  + V+V +  DP+  EF    E Q+LG+ + +++  +  
Sbjct: 151 QLPDALELVARALRSGHSLASGLQVVVQEMPDPISREFGMAYEEQNLGVPIDQALKNVFH 210

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            +P  +  FF+T +++Q Q GG+L+E L  +  I+R+R  +  +VQAL+ E + S  ++ 
Sbjct: 211 RVPNLDFKFFATAVAIQRQSGGDLAEILDKIGHIIRERFRIMGQVQALTGEGRISGIVLM 270

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           +LP  +  ++Y+ +P YM +L  +  G  ++  A    ++G
Sbjct: 271 ALPIVLFFVMYYLNPEYMMLLFTEEMGRKMIAGAVVMQILG 311


>gi|319941898|ref|ZP_08016219.1| hypothetical protein HMPREF9464_01438 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804551|gb|EFW01421.1| hypothetical protein HMPREF9464_01438 [Sutterella wadsworthensis
           3_1_45B]
          Length = 292

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 95/174 (54%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
            FL  FP A+D   RS++AG+PV  A+ ++     D       ++     +GL   E++ 
Sbjct: 115 AFLSRFPEAVDNFTRSIQAGIPVDRALKILGEAYDDEFGRRVLKLCREMKVGLPFREALG 174

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
                +   +V FF  V+++  + G  LS  LA+LS +LR+R+ +  K++AL+ E++ASA
Sbjct: 175 NFADELDDPDVDFFCEVLALNRETGSALSPMLASLSMMLRERRAIDRKLKALTSESRASA 234

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            ++  LP  +  L  F +P  +  L+NDP G ++ G A A ML G ++++ M  
Sbjct: 235 RVLCLLPVFILGLQAFLNPSQLLFLVNDPAGRIVAGCALACMLAGFIIIQRMSR 288


>gi|104779903|ref|YP_606401.1| type II/IV secretion system membrane protein [Pseudomonas
           entomophila L48]
 gi|95108890|emb|CAK13586.1| Putative type II/IV secretion system membrane protein [Pseudomonas
           entomophila L48]
          Length = 292

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 100/184 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +++  + ++  P  LD  VRS++AG  +SDAV   V  + +P+RS   RV     
Sbjct: 107 LSWRCRRQLRQIIEQLPGLLDYSVRSLKAGRTLSDAVLGGVEATREPLRSAMLRVRRNVQ 166

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L +++S +       E+  F+  + +  + GGN SE + NL +++R+ +    +++
Sbjct: 167 LGVPLDDAVSELAELYGQDELRMFALGLRINQRHGGNASELMENLIKLIREHEQGDRQLR 226

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + +AWI+G+LP  +     F +PGY+  +  D  G M+L  A A   +G +V+ 
Sbjct: 227 AMTGETRITAWILGALPLGMVGYFLFANPGYLMAMWRDSHGQMMLLFAFALQAVGCLVLW 286

Query: 181 LMIN 184
            M+ 
Sbjct: 287 RMMR 290


>gi|172062963|ref|YP_001810614.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
 gi|171995480|gb|ACB66398.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
          Length = 325

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 118/185 (63%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L+++   +FL+ FP+A+D+IVR+VRAG+PV+ A++ +   +++PVRS FR + ++  +
Sbjct: 138 RALVERFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRV 197

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ L + +++    + + + SFF+  + +Q + GG+L E L  LS I+R R++++ K +A
Sbjct: 198 GVDLKDVLTQASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + +  II ++PF +   ++  +  Y+ +L +   GH++L +AA  + IG++ +  
Sbjct: 258 LTAEGRITTKIISAVPFVMIGALFLVNRSYVMLLFDTHAGHVMLTIAAVLLTIGLLTINK 317

Query: 182 MINFD 186
           +   D
Sbjct: 318 ISKLD 322


>gi|27378606|ref|NP_770135.1| hypothetical protein blr3495 [Bradyrhizobium japonicum USDA 110]
 gi|27351754|dbj|BAC48760.1| blr3495 [Bradyrhizobium japonicum USDA 110]
          Length = 338

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/180 (28%), Positives = 97/180 (53%), Gaps = 1/180 (0%)

Query: 6   KKRTA-KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++R A +     P+A+ ++  +VR+GLPV +A   +  +   P   +F  V    +LG  
Sbjct: 154 QRRVALQLFRQLPDAIQLVTSTVRSGLPVHEAFRALAREMPQPTAGQFAIVCNEVNLGRP 213

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
            +E++  + R   + E + F+  ++VQ + GG+L+E L NL   +R R  + A+ +AL+ 
Sbjct: 214 PAEAVEGVYRRTQVAEYAMFAVTLAVQLKSGGSLAETLQNLGDTVRQRVALAARAKALAG 273

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           E   S+  +   P     ++Y ++P  +++L  DP G+ LL  A A +L+G +V+  M+ 
Sbjct: 274 EVIFSSRALTISPLIGGGVLYASNPQTVDLLFTDPVGNKLLAYAVASVLVGALVISWMVR 333


>gi|160897512|ref|YP_001563094.1| type II secretion system protein [Delftia acidovorans SPH-1]
 gi|160363096|gb|ABX34709.1| type II secretion system protein [Delftia acidovorans SPH-1]
          Length = 320

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 81/186 (43%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR  + L   P  LD +VR +  G     A  + +    DP+    ++      
Sbjct: 135 IWRRQAKRRERLLQQLPGFLDNMVRLISIGNSPHAAFQMALNNVPDPLGDALQQAAAMLS 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
               L +++ ++ R   L E    + V  +  + GG     L  +S  +RDR++ + ++ 
Sbjct: 195 ASPDLGQAMGQLERNWRLPEFGLLAAVFRMSVRYGGRADLVLERVSAYIRDRQSAERELH 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E + SAW++  LP  V  L+   + GY   + ND  G  ++ VAAA   +G  ++ 
Sbjct: 255 ALSSEIRMSAWVLALLPLVVGALIMVINRGYFMRMWNDDSGQTMVLVAAALEALGAFLLY 314

Query: 181 LMINFD 186
            +    
Sbjct: 315 RLAKLR 320


>gi|171320622|ref|ZP_02909642.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
 gi|171094135|gb|EDT39222.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
          Length = 325

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 116/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L+++   +FL+ FP+A+D+IVR+VRAG+PV+ A++ +   +++PVRS FR + ++  +
Sbjct: 138 RALVERFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRV 197

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + ++     + + + SFF+  + +Q + GG+L E L  LS I+R R++++ K +A
Sbjct: 198 GADLKDVLTHASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + +  II ++PF +   ++  +  Y+ +L +   GH++L +AA  + IG++ +  
Sbjct: 258 LTAEGRITTKIISAVPFVMIGALFLVNRSYVMLLFDTHAGHVMLTIAAVLLTIGLLTINK 317

Query: 182 MINFD 186
           +   D
Sbjct: 318 ISKLD 322


>gi|170704075|ref|ZP_02894707.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
 gi|170131017|gb|EDS99712.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
          Length = 325

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 118/185 (63%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L+++   +FL+ FP+A+D+IVR+VRAG+PV+ A++ +   +++PVRS FR + ++  +
Sbjct: 138 RALVERFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRV 197

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ L + +++    + + + SFF+  + +Q + GG+L E L  LS I+R R++++ K +A
Sbjct: 198 GVDLKDVLTQASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + +  II ++PF +   ++  +  Y+ +L +   GH++L +AA  + IG++ +  
Sbjct: 258 LTAEGRVTTKIISAVPFVMIGALFLVNRSYVMLLFDTHAGHVMLTIAAVLLTIGLLTINK 317

Query: 182 MINFD 186
           +   D
Sbjct: 318 ISKLD 322


>gi|84685157|ref|ZP_01013056.1| Putative Flp pilus assembly protein TadB [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84666889|gb|EAQ13360.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium
           HTCC2654]
          Length = 316

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 95/181 (52%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR        P+ALD++ R +  G P++  +  +     DP+ +EFR + +    G SL+
Sbjct: 136 KRADALTRQLPDALDLMKRGLSVGHPLNVTIRNVATTLPDPIAAEFRILADQVAYGDSLT 195

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  + R + +++  + S  + +Q   GGNL   L  L+R++R R  M+ +V A+S E 
Sbjct: 196 DAVDDLARRIDIEDFHYLSAAVQIQHATGGNLGAMLETLARVIRGRFAMRRRVSAVSSEG 255

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + +A I+ ++P  +      T+P Y   + +DP    + G   A +L   +++R +++F 
Sbjct: 256 RITAIILSAMPVLMYVGTSLTAPEYYASVKDDPAFWPMCGAILALVLGNALMLRKLVSFR 315

Query: 187 V 187
           V
Sbjct: 316 V 316


>gi|299532822|ref|ZP_07046209.1| type II secretion system protein [Comamonas testosteroni S44]
 gi|298719046|gb|EFI60016.1| type II secretion system protein [Comamonas testosteroni S44]
          Length = 327

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 82/183 (44%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             +K   +     P  LD  VR V  G  V  A  +    + DP++S   +       G+
Sbjct: 141 RAQKYRTRLTQQLPGFLDNTVRLVTIGNSVQAAFQMAAASTKDPLQSVMEKAASLARAGM 200

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L  +++ + R   L E+   + ++ +  + GG +   L  ++  +RDR+  +  + A++
Sbjct: 201 DLENAVTHVARQTRLDELHLLAAILRISVRYGGRVDLLLERVANFMRDREQAEQDLSAMT 260

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAW++  LP  V  L+   +  Y   + ND  G  ++  A A  + G++++  M 
Sbjct: 261 AETRLSAWVLSLLPVAVGCLIISFNASYFLNMWNDASGRNIIWAAVALQVFGVLLLYRMA 320

Query: 184 NFD 186
             D
Sbjct: 321 KLD 323


>gi|319940444|ref|ZP_08014789.1| hypothetical protein HMPREF9464_00008 [Sutterella wadsworthensis
           3_1_45B]
 gi|319806070|gb|EFW02819.1| hypothetical protein HMPREF9464_00008 [Sutterella wadsworthensis
           3_1_45B]
          Length = 326

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 83/175 (47%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
            +     P A+D I R  RAG+P   A  +        +  E R +     LG+ L + +
Sbjct: 149 EELGKSLPEAIDSIARICRAGVPAQTAFGLAAQNLRGALSEELRTIDRWLRLGVPLKQVL 208

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
                 +PL E  FF+ ++ +  + GG L++ L  L+  LR+R  +  KVQA + EA+AS
Sbjct: 209 QESAHRVPLPEYRFFAVIVIISQESGGRLADTLERLAATLRERAELALKVQAKTSEARAS 268

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
             I+  L   V    Y  +P     L+ DP G  +LG AAA +  G+ V  LM+ 
Sbjct: 269 IKIVACLVPGVLIYQYIQAPQDFQFLVTDPTGLKVLGYAAASVAAGLFVTWLMVR 323


>gi|149188842|ref|ZP_01867132.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1]
 gi|148837262|gb|EDL54209.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1]
          Length = 301

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 97/183 (53%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L  +R  +F   FP+AL++++ +V AG  +  AV+ +     + V  EF+ + +   L
Sbjct: 115 QWLSNRRRVQFQQTFPDALNVLMSAVTAGESLMQAVSFVGQNLDNEVGREFKNMGDRLKL 174

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S  + + R  +  P  E  FF+  I      GG L   LA L R+L D + M+ K  A
Sbjct: 175 GESPDQVLQRAAKRFPYPEFIFFTIAIRANMSRGGQLRGVLARLIRVLVDARTMETKKMA 234

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ EA+ SA ++ ++P   + ++Y  +P  +N +++DP+G  +L       L+G+ ++ L
Sbjct: 235 MTSEARISAKVVAAIPVIFAVILYNVNPDNINYILHDPKGVWVLYYVVGSELVGLFIVWL 294

Query: 182 MIN 184
           ++ 
Sbjct: 295 LVK 297


>gi|28900580|ref|NP_800235.1| putative TadB protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|28808960|dbj|BAC62068.1| putative TadB [Vibrio parahaemolyticus RIMD 2210633]
          Length = 289

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 87/175 (49%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
            +F D+FP+AL+I+  ++ +G  +  A   +  Q  + V  EF+++ E   +G    + +
Sbjct: 112 QRFKDNFPDALNILSGALSSGQSIVHAFEYVGTQLDNEVGEEFKKMSERLLIGEDPDDVL 171

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
           +R     P  E  FF+  I +    GG L + +  ++RI+ + + ++ K  AL+ EA+AS
Sbjct: 172 ARSAASFPYVEYFFFAATIRINLSRGGQLKDVINRINRIMFEARAIEKKKNALTSEARAS 231

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           A II +LP     ++  TSP   N ++ +  G  +         IG   + +++ 
Sbjct: 232 AKIIAALPVIFIMILKVTSPENYNFVMFEEGGKPIFYYVLVSEAIGFFFIYMILR 286


>gi|238793625|ref|ZP_04637248.1| Type II secretion system protein F domain protein [Yersinia
           intermedia ATCC 29909]
 gi|238727040|gb|EEQ18571.1| Type II secretion system protein F domain protein [Yersinia
           intermedia ATCC 29909]
          Length = 293

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 78/184 (42%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   K     F  DFP  L +I  +  +G  ++  +     +   P+  E   +    +
Sbjct: 107 IRFPRKNNHTIFKRDFPEVLLMINMAASSGTSINQVLERCGKEVGGPLGDELSLICRRLN 166

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S         +     E  F  T+I +  Q GG L E  + LS+++   K  + K  
Sbjct: 167 VGESPETVFYDAYQRFHYPEFYFLITIILLNLQQGGQLRELTSRLSQVITKNKTSEQKKA 226

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++ + + S  I+  +PF  S  +YF  P  +  + N P G ++     +  +IGI ++R
Sbjct: 227 VMTAQTRMSVNILSIIPFVFSLFLYFMDPTAIESMWNHPTGRIIYYYIISSEIIGIALIR 286

Query: 181 LMIN 184
            M+ 
Sbjct: 287 SMLR 290


>gi|225572861|ref|ZP_03781616.1| hypothetical protein RUMHYD_01052 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039787|gb|EEG50033.1| hypothetical protein RUMHYD_01052 [Blautia hydrogenotrophica DSM
           10507]
          Length = 247

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 87/192 (45%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRV 55
           +  I+++  +    F + LD +  +++AG  V +A+++   +          +  E R +
Sbjct: 56  QQKIREQQRELNYQFKDMLDSLNVTLQAGYSVENAISLCARELERLYGREADLTRELREM 115

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
            +   L + +      +      ++V  F+ V     + GG++ + L   +++L D+  +
Sbjct: 116 EDKLKLSVPVERLFMDLGSRSHSEDVENFAVVFQTAKRSGGDMRKILEKSAQMLGDKIEV 175

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K +++A+    K+   ++  +PF +   +  TSPG++ VL  +  G  ++    A  L  
Sbjct: 176 KKEIEAVLTAKKSEQRLMSVMPFGIILYMSLTSPGFLEVLYGNLFGVAVMTGCLAVYLFA 235

Query: 176 IMVMRLMINFDV 187
             +   +++ +V
Sbjct: 236 WWLGNRIVDIEV 247


>gi|313835700|gb|EFS73414.1| type II secretion system F domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928371|gb|EFS92202.1| type II secretion system F domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314970223|gb|EFT14321.1| type II secretion system F domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328908048|gb|EGG27807.1| LOW QUALITY PROTEIN: Type II secretion system F domain protein
           [Propionibacterium sp. P08]
          Length = 307

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 94/186 (50%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   ++RTAKF++  P    ++  +  AGL +  A+A++  +  +P RSEF +V     
Sbjct: 121 VRRSQQRRTAKFVNQLPELARLLANASHAGLSLPTAIAMVSDELGEPARSEFAQVENRLR 180

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL  ++  +  ++  +EV+   + + V ++ GG+L  AL  ++  L +RK  + +V 
Sbjct: 181 FGASLQTALDELASHVRSREVTVLMSTLIVSARSGGSLVTALRGIADSLEERKETRREVT 240

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +  ++ A+A++I  +   +   +    PG + ++ +   G + L    +   +G +V+R
Sbjct: 241 TILSQSLATAYLIIIIGLGLLVALNMFEPGTVELMTHSLVGRICLIAGLSLFAVGFVVIR 300

Query: 181 LMINFD 186
            M    
Sbjct: 301 QMTKVK 306


>gi|220918107|ref|YP_002493411.1| type II secretion system protein [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219955961|gb|ACL66345.1| type II secretion system protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 321

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 59/181 (32%), Positives = 104/181 (57%), Gaps = 1/181 (0%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R+ +  +  P ALD++ RS+RAG   + A  V+  +  +PV  EF R  E+Q LGL + 
Sbjct: 140 RRSNRLSEQLPEALDMMARSLRAGHAFTSAFEVVATEMPEPVAVEFARAFESQRLGLPVE 199

Query: 67  ESISRMVRYMP-LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           ++I +M    P  +++  F+    +Q + GGNL+E L +++  +R R    +K+ AL+ E
Sbjct: 200 QAIVQMTERAPGNRDLRIFAVSALIQKETGGNLAEILGSIAETIRARYRFYSKLSALTAE 259

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            +AS  I+G LP  ++ ++   +P YM  L++DP GHM++  AA   L+G+  +  +   
Sbjct: 260 GRASGAILGMLPILMALVLRIMNPAYMGRLVSDPLGHMIMLFAALSWLVGVAWLYSLTKV 319

Query: 186 D 186
           D
Sbjct: 320 D 320


>gi|172060498|ref|YP_001808150.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
 gi|171993015|gb|ACB63934.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
          Length = 330

 Score = 98.7 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 85/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R  K +   P+ LD IVR V  G  V  A    +  + +P+R     V     
Sbjct: 145 LTSRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTTEEPLRGCLDHVSRMLR 204

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  + +    QE     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 205 TGVEIDRAMLHIAKIYRTQEFELLGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELT 264

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SA+++  LP  + + V  T+P Y+  +  DP G MLL +A    + G + + 
Sbjct: 265 AMSAETRLSAFVLVMLPIGIGSFVVMTNPKYLEGMWIDPGGRMLLVLAFLLQIAGSVWLY 324

Query: 181 LMINFD 186
            M    
Sbjct: 325 RMARLR 330


>gi|226325182|ref|ZP_03800700.1| hypothetical protein COPCOM_02974 [Coprococcus comes ATCC 27758]
 gi|225206530|gb|EEG88884.1| hypothetical protein COPCOM_02974 [Coprococcus comes ATCC 27758]
          Length = 301

 Score = 98.3 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 83/187 (44%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   K R A+F +    +L ++  ++RAG  +  A+  +   S DP++SE         
Sbjct: 114 VRSRGKSRKARFDEQLARSLPMVAENMRAGSSIERALRSVGENSDDPLKSELLACAGAMQ 173

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +   +  ++  M +    +++      ++   ++GG+L+++L  +   +  R +++  ++
Sbjct: 174 IDGDIVAALDDMAKRTGSKDLVLLQAAVASHKEVGGSLADSLERIGDTIDARLSLRRHIE 233

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           + +    AS   +  +   +  ++    P   +    DP G  +L V   F   G +++ 
Sbjct: 234 SETSSVIASMKALIVMLLILFAIIMVGIPQAYDFYTQDPLGIPVLIVVVLFAATGSVIIY 293

Query: 181 LMINFDV 187
            M + DV
Sbjct: 294 KMADIDV 300


>gi|167562911|ref|ZP_02355827.1| hypothetical protein BoklE_10150 [Burkholderia oklahomensis EO147]
          Length = 258

 Score = 98.3 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 83/186 (44%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V     
Sbjct: 73  LASRTQKRRLQIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 132

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 133 SGVEIDRAMVYIAELYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELA 192

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   + 
Sbjct: 193 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQVAGGYWLY 252

Query: 181 LMINFD 186
            +    
Sbjct: 253 RLARLR 258


>gi|156975615|ref|YP_001446522.1| Flp pilus assembly protein TadB [Vibrio harveyi ATCC BAA-1116]
 gi|156527209|gb|ABU72295.1| hypothetical protein VIBHAR_03348 [Vibrio harveyi ATCC BAA-1116]
          Length = 301

 Score = 98.3 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 94/182 (51%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L  KR   F   FP+AL+I++ +V AG  +  A + +       V  EF+ + +   LG
Sbjct: 116 WLQNKRRLDFEKKFPDALNILMSAVTAGESLMHAFSFVGENMEGEVGREFKEMGDRLKLG 175

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            +  + + R  +  P  E  FF+  I      GG L   LA L RIL D + +++K  A+
Sbjct: 176 ENAEKVLLRSCKAFPYPEYIFFTITIRANINRGGQLKNVLARLIRILVDARTLESKRMAM 235

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ SA ++ ++P   + +V    P +++ ++NDP+G M+L       ++G+ V+ L+
Sbjct: 236 TSEARISAKVVAAIPIAFAFMVNQIDPSHIDFILNDPQGRMVLYYVVGSEVLGLFVVWLL 295

Query: 183 IN 184
           + 
Sbjct: 296 VK 297


>gi|167570102|ref|ZP_02362976.1| hypothetical protein BoklC_09676 [Burkholderia oklahomensis C6786]
          Length = 268

 Score = 98.3 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 83/186 (44%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V     
Sbjct: 83  LASRTQKRRLQIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 142

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 143 SGVEIDRAMVYIAELYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELA 202

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   + 
Sbjct: 203 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQVAGGYWLY 262

Query: 181 LMINFD 186
            +    
Sbjct: 263 RLARLR 268


>gi|91775992|ref|YP_545748.1| type II secretion system protein [Methylobacillus flagellatus KT]
 gi|91709979|gb|ABE49907.1| type II secretion system protein [Methylobacillus flagellatus KT]
          Length = 303

 Score = 98.3 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 93/181 (51%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            +++R    +   P  +D + R++  G  V  AV  +      P+R+   RV+    LG 
Sbjct: 121 RLQRRQRIIVTQIPLFIDQVSRALSTGKSVEGAVRSVTEDMQMPLRAVLDRVVRATDLGA 180

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
             ++++ +      ++E+   +  I + S  G +  E L ++ +++R ++  + ++ A++
Sbjct: 181 GFADAMQKAAELHHIKELGLIALAIRISSNYGSSPQEMLKSIVQMIRQQEQAQRELAAMT 240

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E K +AW++   P  +   ++  +PGY+++++NDP G ++   A A  ++G+++   M+
Sbjct: 241 GETKMTAWVLSLTPLLIVGYMFIANPGYIDMMLNDPSGALIFKAALAMQVVGVLIFWRMM 300

Query: 184 N 184
            
Sbjct: 301 K 301


>gi|307730003|ref|YP_003907227.1| type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1003]
 gi|307584538|gb|ADN57936.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1003]
          Length = 404

 Score = 98.3 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 80/186 (43%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           M     +R    +   P+ LD IVR +  G  V  A    +  +  P+R     V     
Sbjct: 218 MSMRASRRRQAIVRQLPSFLDGIVRLITLGNSVPAAFQASLRTTEAPLRECLDHVSRMLR 277

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++S +      +E+     V+ +  + GG     L  +S  +RD +  + ++ 
Sbjct: 278 SGVEIDRALSHVAVLYGARELELLGAVLRLSVKYGGRADVMLDRMSSFMRDLEQAERELV 337

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + S+W++G LP  +   +  T+P Y   +  DP G  +L +A A  L G  ++ 
Sbjct: 338 AMSSETRLSSWVLGMLPIGIGGFLILTNPRYFGSMWFDPGGRQILYLAFALQLTGAYLLY 397

Query: 181 LMINFD 186
            +    
Sbjct: 398 RLARLK 403


>gi|262164952|ref|ZP_06032690.1| flp pilus assembly protein TadB [Vibrio mimicus VM223]
 gi|262027332|gb|EEY45999.1| flp pilus assembly protein TadB [Vibrio mimicus VM223]
          Length = 303

 Score = 98.3 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 53/182 (29%), Positives = 91/182 (50%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L   +TAKF  +FP+AL+I+  ++ AG  +  A   +  Q  + V  EF+ + E   +G
Sbjct: 119 KLRAHKTAKFQSNFPDALNILSGALSAGQSIVHAFEYVGKQLDNDVGYEFKFMAERLLIG 178

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
               E ++R     P  E  FF++ I +    GG L E +  ++RI+ D + +  K  AL
Sbjct: 179 EDPDEVLARSAASFPYVEYFFFASTIRINLSRGGQLKEVINRINRIMFDARAVDKKKNAL 238

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA++SA II +LP     ++ FTSP   N ++ +  G  +        LIG   + ++
Sbjct: 239 TSEARSSAKIIAALPVIFLLILKFTSPENYNFVMFEEGGKPIFYYVVISELIGFFCIWMI 298

Query: 183 IN 184
           + 
Sbjct: 299 LR 300


>gi|269216232|ref|ZP_06160086.1| putative bacterial type II secretion system protein F domain
           protein [Slackia exigua ATCC 700122]
 gi|269130491|gb|EEZ61569.1| putative bacterial type II secretion system protein F domain
           protein [Slackia exigua ATCC 700122]
          Length = 335

 Score = 98.3 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 84/186 (45%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
                    +  +  P+AL  +     AGL V  A A +  ++  P+R  F  V     L
Sbjct: 149 SRRRDAELQRMRELVPDALRCMEACFHAGLTVPQAFAEVARETKPPLRDAFSMVSHDMEL 208

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S+ E++ R  R   L E+SF +  + VQ   GG+ S  + +    +     ++  ++ 
Sbjct: 209 GRSVDEALERFRRASSLPELSFVAMALDVQHACGGDASRIVQSAQESVERGIELRRSLRV 268

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            + +AK SA ++  +P  +  ++    PG+M+       G  LL  AAA  + GI ++  
Sbjct: 269 QTAQAKLSAQVVSIMPIALLVVLSGIDPGFMDPFFESGAGIALLVCAAAMEIAGIAIVSR 328

Query: 182 MINFDV 187
           +++ D+
Sbjct: 329 VLDVDI 334


>gi|296158798|ref|ZP_06841627.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
 gi|295891003|gb|EFG70792.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
          Length = 356

 Score = 98.3 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 84/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   + KR  + +   P  LD IVR +  G  V  A    +  +  P+R     V     
Sbjct: 170 LTLRVNKRRQQIVRQLPLFLDGIVRLITLGNSVPAAFQAALQTTEAPLRECLDYVSRMLR 229

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++S++     ++E+     V+ +  + GG     L  ++  +RD ++ + ++ 
Sbjct: 230 TGVEIDRALSQVALIYGVRELELVGAVLRLSVKYGGRADVMLERMASFMRDLEHAERELV 289

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + S+W++  LP  +   +  ++P Y   +  DP G  L+ +A A  L G  ++ 
Sbjct: 290 AMSAETRLSSWVLAMLPVGIGGFLILSNPKYFASMWFDPTGRQLVYLAFALQLGGAYLLY 349

Query: 181 LMINFD 186
            + N  
Sbjct: 350 RLANLR 355


>gi|238789151|ref|ZP_04632939.1| Type II secretion system protein F domain protein [Yersinia
           frederiksenii ATCC 33641]
 gi|238722683|gb|EEQ14335.1| Type II secretion system protein F domain protein [Yersinia
           frederiksenii ATCC 33641]
          Length = 187

 Score = 98.3 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 80/184 (43%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           MK   K+  + F  DFP  L +I  +  +G  ++  +     + S P+  E   +    +
Sbjct: 1   MKLSRKRHHSLFKKDFPEVLLMINMASGSGASINHVLERCGQEVSGPLGHELVLICRRLN 60

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S         +     E  F  T+I +  Q GG L E  + LS+++   K  + K  
Sbjct: 61  LGESPETVFYDAYQRFNYPEFYFLITIILLNIQQGGQLKELTSRLSQVISKNKTTEQKKS 120

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L+ + + S  II ++P   S L+YF     +  + ++P G M+         IGI V+R
Sbjct: 121 VLTAQTRMSVNIISAMPVAFSLLLYFIDAKNIESMWDNPIGRMIFFYIITSEAIGIYVIR 180

Query: 181 LMIN 184
            M+ 
Sbjct: 181 KMLR 184


>gi|217978830|ref|YP_002362977.1| type II secretion system protein [Methylocella silvestris BL2]
 gi|217504206|gb|ACK51615.1| type II secretion system protein [Methylocella silvestris BL2]
          Length = 319

 Score = 98.3 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 104/184 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +K   +F+D FP+A+D + R +RAGLP++ AV  I  ++  P+ + F  + +   
Sbjct: 131 LVRRQRKTERQFMDLFPDAVDTVARMIRAGLPITAAVRTIASEAGAPISTVFAMIADELK 190

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ + +++    + + L +  FF+  +++Q   GGNL   L  LS+I+R R+ ++ K +
Sbjct: 191 IGVPIEQTLDASSKQIGLADFRFFAVAVALQYSTGGNLMATLEALSQIVRKRRALRLKAK 250

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A + E + +A+ +G +P   S  ++   PGY+  L  DPRG ++L  A   + +  + MR
Sbjct: 251 AATGEIRITAYALGGIPVLTSGALFVLQPGYLAPLWTDPRGPVILMAAGGLLFLAYLSMR 310

Query: 181 LMIN 184
           +++ 
Sbjct: 311 MIMR 314


>gi|258624767|ref|ZP_05719698.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603]
 gi|262173890|ref|ZP_06041567.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451]
 gi|258582929|gb|EEW07747.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603]
 gi|261891248|gb|EEY37235.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451]
          Length = 303

 Score = 97.9 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 53/182 (29%), Positives = 91/182 (50%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L   +TAKF  +FP+AL+I+  ++ AG  +  A   +  Q  + V  EF+ + E   +G
Sbjct: 119 KLRAHKTAKFQSNFPDALNILSGALSAGQSIVHAFEYVGKQLDNDVGYEFKFMAERLLIG 178

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
               E ++R     P  E  FF++ I +    GG L E +  ++RI+ D + +  K  AL
Sbjct: 179 EDPDEVLARSAASFPYVEYFFFASTIRINLSRGGQLKEVINRINRIMFDARAVDKKKNAL 238

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA++SA II +LP     ++ FTSP   N ++ +  G  +        LIG   + ++
Sbjct: 239 TSEARSSAKIIAALPVIFLLILKFTSPENYNFVMFEEGGKPIFYYVVISELIGFFCIWMI 298

Query: 183 IN 184
           + 
Sbjct: 299 LR 300


>gi|297192378|ref|ZP_06909776.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197723021|gb|EDY66929.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 312

 Score = 97.9 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 87/187 (46%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KRT  F+   P    ++  + +AGL +  A+ + V +  DP R E RRV +   
Sbjct: 126 LNWQRAKRTEAFISQLPELTRVLANATQAGLALRTAIGMAVEELDDPAREELRRVADQLA 185

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG SL +++  +V  +P +E++   + + + ++ GG +  +L NL+  L +RK  + +V 
Sbjct: 186 LGRSLDDALGDLVERLPSRELTVLVSTLILSNRAGGTIVTSLRNLTETLEERKETRREVT 245

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L  + K +A  +  L      ++     G +  +     G + + +A     +G +++ 
Sbjct: 246 TLLSQVKVTAVAVPVLGLGFLLVINGMRDGALEDMTGALGGRVAVLIATGLYALGFILIN 305

Query: 181 LMINFDV 187
            +    +
Sbjct: 306 RLTRVRI 312


>gi|253576285|ref|ZP_04853616.1| type II secretion system protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844412|gb|EES72429.1| type II secretion system protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 270

 Score = 97.9 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 79/192 (41%), Gaps = 8/192 (4%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFRRV 55
           +L+++R       F  AL  +  S+ AG  V +     +           + V  E   +
Sbjct: 80  YLLRRRRENLSLHFKQALYSLSSSLAAGRSVENGFREAIDDLRLLYPDGDNDVMRELAII 139

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                 G  + E++    R   ++++  F+ V +   + GG+L E +   S ++ ++  +
Sbjct: 140 CARMDYGQPIEEALLDFSRRAAMEDIDNFADVFTTCKRSGGDLVEVIRRTSNLIGEKLEI 199

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
             ++  +  + +  A  + + P      + FTSP YM  L +   G ++ GVA     I 
Sbjct: 200 TQEISVMIAQKRFEAKAMLAAPVLFLLFMQFTSPDYMRPL-HHGAGLLISGVALLLYAIC 258

Query: 176 IMVMRLMINFDV 187
             +M  +I+  V
Sbjct: 259 AWLMLKIIDIRV 270


>gi|85711970|ref|ZP_01043024.1| Flp pilus assembly protein TadB [Idiomarina baltica OS145]
 gi|85694156|gb|EAQ32100.1| Flp pilus assembly protein TadB [Idiomarina baltica OS145]
          Length = 281

 Score = 97.9 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 89/185 (48%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + +  KR        P  L  +   +++G+ + +AV  +  +   P+  E   +I    L
Sbjct: 95  RRMRNKRYRALQRQLPMLLMNLSNQLKSGMSMVNAVTSLFDEFEAPLGQEVNELIRQVRL 154

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L  +++   R +P+  ++     +++  + GG  S+ L  L+  L  ++ ++ + QA
Sbjct: 155 GDDLPTALTDWQRRVPIFSITLVVQALTLGYRNGGQQSQVLRRLAENLGQQQKVRDRQQA 214

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           LS + +  AW++  +P  +  L+ +  P +   L N   G + LGVA    LIG M+++ 
Sbjct: 215 LSAQGRMQAWVLICMPLALFLLLNWMKPTHTAYLTNTLIGQVALGVAIVLTLIGAMMVKR 274

Query: 182 MINFD 186
           ++N D
Sbjct: 275 ILNTD 279


>gi|258620799|ref|ZP_05715834.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573]
 gi|258586997|gb|EEW11711.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573]
          Length = 303

 Score = 97.9 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 53/182 (29%), Positives = 91/182 (50%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L   +TAKF  +FP+AL+I+  ++ AG  +  A   +  Q  + V  EF+ + E   +G
Sbjct: 119 KLRAHKTAKFQSNFPDALNILSGALSAGQSIVHAFEYVGKQLDNDVGYEFKFMAERLLIG 178

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
               E ++R     P  E  FF++ I +    GG L E +  ++RI+ D + +  K  AL
Sbjct: 179 EDPDEVLARSAASFPYVEYFFFASTIRINLSRGGQLKEVINRINRIMFDARAVDKKKNAL 238

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA++SA II +LP     ++ FTSP   N ++ +  G  +        LIG   + ++
Sbjct: 239 TSEARSSAKIIAALPVIFLLILKFTSPENYNFVMFEEGGKPIFYYVVISELIGFFCIWMI 298

Query: 183 IN 184
           + 
Sbjct: 299 LR 300


>gi|83719714|ref|YP_443056.1| hypothetical protein BTH_I2539 [Burkholderia thailandensis E264]
 gi|83653539|gb|ABC37602.1| membrane protein, putative [Burkholderia thailandensis E264]
          Length = 336

 Score = 97.9 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 84/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V     
Sbjct: 151 LASRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTDAPLRGCLDHVSRMLR 210

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 211 SGVEIDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 270

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   + 
Sbjct: 271 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPMGRQLVYLAFILQVAGGYWLY 330

Query: 181 LMINFD 186
            +    
Sbjct: 331 RLARLR 336


>gi|91783014|ref|YP_558220.1| putative tight adherence TadB related transmembrane protein
           [Burkholderia xenovorans LB400]
 gi|91686968|gb|ABE30168.1| Putative tight adherence TadB related transmembrane protein
           [Burkholderia xenovorans LB400]
          Length = 359

 Score = 97.5 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 84/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   + KR  + +   P  LD IVR +  G  V  A    +  +  P+R     V     
Sbjct: 173 LTLRVNKRRQQIVRQLPLFLDGIVRLITLGNSVPAAFQAALQTTEAPLRECLDYVSRMLR 232

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++S++     ++E+     V+ +  + GG     L  ++  +RD ++ + ++ 
Sbjct: 233 TGVEIDRALSQVALIYGVRELELVGAVLRLSVKYGGRADVMLERMASFMRDLEHAERELV 292

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + S+W++  LP  +   +  ++P Y   +  DP G  L+ +A A  L G  ++ 
Sbjct: 293 AMSAETRLSSWVLAMLPVGIGGFLILSNPKYFASMWFDPTGRQLVYLAFALQLGGAYLLY 352

Query: 181 LMINFD 186
            + N  
Sbjct: 353 RLANLR 358


>gi|296122065|ref|YP_003629843.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
 gi|296014405|gb|ADG67644.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
          Length = 285

 Score = 97.5 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 81/184 (44%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + ++   R  + L   P  L+ + R+   G  V   + ++   +  P+  E +  +    
Sbjct: 97  LMYVRSSRQNQILGQLPAMLEELARAATTGRSVEQCLQLVAADTPSPLGDELQLCVRRMQ 156

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ + ++++ +     L  +  F   + V  Q GG+L   L  LS+ +RDR     +++
Sbjct: 157 MGMPMRDAVADLPDRTGLMTLRLFCMTLGVHQQTGGDLVWVLEQLSKTIRDRLQYLGRLR 216

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++  ++A+A ++  LP  V        P Y + L+    G     +A    +IG + + 
Sbjct: 217 AMTAASRATALLMVVLPPGVLIFFTLRDPDYFSKLMGSSWGRNGTIIAFTLTMIGTIWVL 276

Query: 181 LMIN 184
            ++ 
Sbjct: 277 RILR 280


>gi|251791987|ref|YP_003006707.1| TadB [Aggregatibacter aphrophilus NJ8700]
 gi|247533374|gb|ACS96620.1| TadB [Aggregatibacter aphrophilus NJ8700]
          Length = 294

 Score = 97.5 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 75/178 (42%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +    F   FP  + I+  +  +G  +  A+       +  +  EF+ + +   +G    
Sbjct: 114 RNKKTFNAMFPEVIQIMNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRLSIGEDPM 173

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
                     P +E  FF T++      GG + E ++ L R++ D   M+ K +A++ EA
Sbjct: 174 AVFEDSYSRYPYKEFYFFITIVRTNLNKGGQIREVISRLGRLIADSNKMEKKKKAMTSEA 233

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + SA I+  LP      + F  P     LINDP G  +L       L G+ ++  ++ 
Sbjct: 234 RMSAMIVACLPVGFFFFMQFAMPENFEFLINDPSGRYVLYYVFGSELFGMGIIWWLMR 291


>gi|197302281|ref|ZP_03167340.1| hypothetical protein RUMLAC_01008 [Ruminococcus lactaris ATCC
           29176]
 gi|197298712|gb|EDY33253.1| hypothetical protein RUMLAC_01008 [Ruminococcus lactaris ATCC
           29176]
          Length = 197

 Score = 97.5 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 83/193 (43%), Gaps = 6/193 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR------SEFRR 54
           ++ +  K+  +F   F +++ I+  +++AG    +A+           +       E+  
Sbjct: 5   LEEMTDKKEEEFRVQFKDSIQIMAGALKAGYSAENAIRETCHDLKPMYKSESRIIKEYEI 64

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           +I    + + + + +S     +  ++V  F TV +   + GG+    + +  +++ ++  
Sbjct: 65  MIRKLKIHIPVGQVLSEFAENVEQEDVDNFVTVFTTAQKSGGDSIVIIKDAVKVISEKME 124

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
            + ++Q +    K    I+  +PF +   +  T   ++ VL  +P G +++ +  A    
Sbjct: 125 TEKEIQTMIASKKLEFEIMSMIPFGMIGYMKLTFGDFLKVLYGNPAGIIVMSICLALYFT 184

Query: 175 GIMVMRLMINFDV 187
             +  + MI  +V
Sbjct: 185 AYIWGKKMIKIEV 197


>gi|238762412|ref|ZP_04623383.1| Type II secretion system protein F domain protein [Yersinia
           kristensenii ATCC 33638]
 gi|238699397|gb|EEP92143.1| Type II secretion system protein F domain protein [Yersinia
           kristensenii ATCC 33638]
          Length = 284

 Score = 97.5 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 81/183 (44%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   K+    F  DFP AL +I  +  +G  ++  +     + S P+ +EF  +    +
Sbjct: 98  LRLSRKRHHTLFKKDFPEALLMINMAASSGASINQVLERCGQEISGPLGNEFSLICRRLN 157

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S         +     E  F  T+  +  Q GG L E  + LS ++   K  + K  
Sbjct: 158 VGESPEAVFYDSYQRFKHPEFYFLITITLLNLQQGGQLRELTSRLSEVINKNKTTEQKKA 217

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++ + + S  II  +P   S L+YF  P  +  + + P G M+        ++GI+++R
Sbjct: 218 VMTAQVRMSVNIISIMPIAFSFLLYFLDPTTIESMWDHPIGRMIYYYIITSEIVGIVLIR 277

Query: 181 LMI 183
            M+
Sbjct: 278 KML 280


>gi|170732850|ref|YP_001764797.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
 gi|169816092|gb|ACA90675.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
          Length = 326

 Score = 97.5 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 79/186 (42%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I +R  K +   P+ LD IVR V  G  V  A    +  +  P+R     V     
Sbjct: 141 ITSRISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQSALQTAEMPLRRCLDDVSRMLR 200

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  +     ++E      V+ +  + GG     L  +S  +RD +  + ++ 
Sbjct: 201 SGVDIDRAMLHIAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEQAERELS 260

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SAW++  LP  V + V  TSP Y   + ND  G  L+ +A     IG   + 
Sbjct: 261 AMSAETRLSAWVLALLPIAVGSFVIATSPRYFTAMWNDDTGRQLVYLAFVLQAIGGFWLF 320

Query: 181 LMINFD 186
            +    
Sbjct: 321 RLARLR 326


>gi|197336186|ref|YP_002155273.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11]
 gi|197317676|gb|ACH67123.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11]
          Length = 305

 Score = 97.5 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 87/182 (47%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L ++   +F + FP+AL+++  +V AG  ++ A+A +  +    V  EF+ + E   LG
Sbjct: 121 WLQEREKKQFNERFPDALNMLSSAVSAGESITHAIAFVGKKLEGDVGKEFKIMGERLQLG 180

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S  E   +     P     FF   +      GG L + ++ L+R++ D + ++ K  AL
Sbjct: 181 ESPDEVFKKSCVRFPYPAFRFFVITLRANMNRGGQLRDVISRLNRLMFDARAVERKKYAL 240

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ SA I+ + PF    ++ F SP     ++    G  +L        IG++++  +
Sbjct: 241 TSEARISAKIVCATPFFFLFILQFLSPENYEFVMFHTEGRPILYYVLISEAIGMLIIWGL 300

Query: 183 IN 184
           + 
Sbjct: 301 LK 302


>gi|297581612|ref|ZP_06943534.1| flp pilus assembly protein TadB [Vibrio cholerae RC385]
 gi|297534019|gb|EFH72858.1| flp pilus assembly protein TadB [Vibrio cholerae RC385]
          Length = 299

 Score = 97.5 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 95/185 (51%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L +KR  +F D+ P+ +D ++R++R G P+      I  Q        F ++++   +
Sbjct: 114 QQLQQKRMERFRDELPDIIDGLIRALRVGAPMLAVFQDIANQHQGVTSRLFHQIVDELRV 173

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G ++++ +    + MP+ E  F + V+S+Q + GG L+  L  L   LR R  + A +Q 
Sbjct: 174 GRTMADVMKLAAQRMPIAEFRFLTIVLSLQQETGGRLANVLERLGNTLRSRAELNASIQT 233

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ E++ SA ++ +LP  V  +++ T   + N L+    G +++      +L G+ ++R 
Sbjct: 234 ITSESRNSAKVLAALPVLVMLVLFSTGREHFNFLMATTGGQIVMIYITISILFGLFLIRR 293

Query: 182 MINFD 186
           M    
Sbjct: 294 MTQLK 298


>gi|134282399|ref|ZP_01769104.1| type II secretion system protein [Burkholderia pseudomallei 305]
 gi|134246437|gb|EBA46526.1| type II secretion system protein [Burkholderia pseudomallei 305]
          Length = 335

 Score = 97.1 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 84/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V     
Sbjct: 150 LVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 209

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 210 SGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 269

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   + 
Sbjct: 270 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLY 329

Query: 181 LMINFD 186
            +    
Sbjct: 330 RLARLR 335


>gi|53719506|ref|YP_108492.1| putative fimbriae-related outer membrane protein [Burkholderia
           pseudomallei K96243]
 gi|76810037|ref|YP_333344.1| putative fimbriae-related outer membrane protein [Burkholderia
           pseudomallei 1710b]
 gi|126438493|ref|YP_001058810.1| type II secretion system protein [Burkholderia pseudomallei 668]
 gi|126453046|ref|YP_001066061.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
 gi|242314637|ref|ZP_04813653.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
 gi|254188636|ref|ZP_04895147.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|254197238|ref|ZP_04903660.1| type II secretion system protein [Burkholderia pseudomallei S13]
 gi|254259377|ref|ZP_04950431.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
 gi|254297790|ref|ZP_04965243.1| type II secretion system protein [Burkholderia pseudomallei 406e]
 gi|52209920|emb|CAH35892.1| putative fimbriae-related outer membrane protein [Burkholderia
           pseudomallei K96243]
 gi|76579490|gb|ABA48965.1| putative fimbriae-related outer membrane protein [Burkholderia
           pseudomallei 1710b]
 gi|126217986|gb|ABN81492.1| type II secretion system protein [Burkholderia pseudomallei 668]
 gi|126226688|gb|ABN90228.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
 gi|157807876|gb|EDO85046.1| type II secretion system protein [Burkholderia pseudomallei 406e]
 gi|157936315|gb|EDO91985.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|169653979|gb|EDS86672.1| type II secretion system protein [Burkholderia pseudomallei S13]
 gi|242137876|gb|EES24278.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
 gi|254218066|gb|EET07450.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
          Length = 335

 Score = 97.1 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 84/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V     
Sbjct: 150 LVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 209

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 210 SGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 269

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   + 
Sbjct: 270 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLY 329

Query: 181 LMINFD 186
            +    
Sbjct: 330 RLARLR 335


>gi|167582057|ref|ZP_02374931.1| hypothetical protein BthaT_28197 [Burkholderia thailandensis TXDOH]
          Length = 261

 Score = 97.1 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 84/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V     
Sbjct: 76  LASRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTDAPLRGCLDHVSRMLR 135

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 136 SGVEIDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 195

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   + 
Sbjct: 196 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPMGRQLVYLAFILQVAGGYWLY 255

Query: 181 LMINFD 186
            +    
Sbjct: 256 RLARLR 261


>gi|293604634|ref|ZP_06687036.1| type II secretion system protein [Achromobacter piechaudii ATCC
           43553]
 gi|292816965|gb|EFF76044.1| type II secretion system protein [Achromobacter piechaudii ATCC
           43553]
          Length = 272

 Score = 97.1 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 101/186 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L ++R  +F    P AL ++  ++RAG+ ++  +  +V QS  P+  EF  ++  Q 
Sbjct: 86  VSQLRRRRAHRFEQQLPMALLMLAAAMRAGVALTTGLRHVVEQSGAPLAQEFGLMLREQR 145

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+    ++  +   MP    S     + + SQ GGNL+EAL ++++ LR R  ++AK+Q
Sbjct: 146 LGVPWDAALENLQTRMPGDSTSLVVAAMRIASQTGGNLAEALESIAQTLRARLQLQAKLQ 205

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ + +  AWI+G+LP  +  ++    P  M +L + P G  +L +       G++++R
Sbjct: 206 ALTSQGRLQAWIVGALPLLLLAVLDQLEPDIMGLLWHTPIGWGVLAILVVLETAGVLLIR 265

Query: 181 LMINFD 186
            ++  +
Sbjct: 266 RIVRIE 271


>gi|237812070|ref|YP_002896521.1| type II secretion system protein [Burkholderia pseudomallei
           MSHR346]
 gi|237505569|gb|ACQ97887.1| type II secretion system protein [Burkholderia pseudomallei
           MSHR346]
          Length = 329

 Score = 97.1 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 84/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V     
Sbjct: 144 LVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 203

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 204 SGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 263

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   + 
Sbjct: 264 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLY 323

Query: 181 LMINFD 186
            +    
Sbjct: 324 RLARLR 329


>gi|251795273|ref|YP_003010004.1| type II secretion system protein [Paenibacillus sp. JDR-2]
 gi|247542899|gb|ACS99917.1| type II secretion system protein [Paenibacillus sp. JDR-2]
          Length = 287

 Score = 97.1 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 83/193 (43%), Gaps = 8/193 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFRR 54
             L+ +R  +    F  AL  +  S+ AG  V +A    +          +  +  EFR 
Sbjct: 96  SFLLVRRKERLQLQFKEALYSLASSLAAGRSVENAFLATIDDLKLLYPDPNTELLLEFRI 155

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           V      G  L +++  + +   L +++ FS V +V  + GG+L E +   S+ + ++  
Sbjct: 156 VKYRLDNGEPLEQALRSLAKRTHLDDITQFSDVFAVCKRSGGDLVEVMKRTSQTIGEKLE 215

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +K ++  L  + +  A I+ ++PF     +   +P YM  L     G++LL +    +  
Sbjct: 216 VKQEISVLLAQKRFEARIMMAVPFAFLGFLSAFAPDYMKPLYG-GGGYVLLTIGLVVLSF 274

Query: 175 GIMVMRLMINFDV 187
              ++  ++   V
Sbjct: 275 CFWLIHRIMQIRV 287


>gi|323525749|ref|YP_004227902.1| Type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1001]
 gi|323382751|gb|ADX54842.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1001]
          Length = 386

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 80/185 (43%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
                +R    +   P+ LD IVR +  G  V  A    +  +  P+R     V      
Sbjct: 201 SMRASRRRQAIVRQLPSFLDGIVRLITLGNSVPAAFQASLQITEAPLRECLDHVSRMLRS 260

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ +  ++S +      +E+     V+ +  + GG     L  +S  +RD ++ + ++ A
Sbjct: 261 GVEIDRALSHVAVLYGARELELVGAVLRLSVKYGGRADVMLDRMSSFMRDLEHAERELVA 320

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           +S E + S+W++G LP  +   +  T+P Y   +  DP G  +L +A A  L G  ++  
Sbjct: 321 MSSETRLSSWVLGMLPAGIGGFLILTNPRYFGAMWFDPGGRQILYIAFALQLTGAYLLYR 380

Query: 182 MINFD 186
           +    
Sbjct: 381 LARLK 385


>gi|260914308|ref|ZP_05920777.1| Flp pilus assembly protein TadB [Pasteurella dagmatis ATCC 43325]
 gi|260631409|gb|EEX49591.1| Flp pilus assembly protein TadB [Pasteurella dagmatis ATCC 43325]
          Length = 294

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 81/179 (45%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++    F   FP  + I+  +  +G  +  A+       +  +  EF+ + +   +G   
Sbjct: 113 RRNHKMFNAMFPEVIQILTAAASSGAGLLQALERCGKDLTGQLGDEFKNIHKRLAIGEDP 172

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
                      P +E  FF T+I      GG + E ++ L RI+ D K M+ K +A++ E
Sbjct: 173 VTVFEDSYSRYPYKEFYFFITIIRTNLSKGGQIREVISRLGRIIADAKKMEQKKKAMTSE 232

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           A+ SA I+ S P      + FT P   + LINDP G  +L       LIG++++  ++ 
Sbjct: 233 ARMSAMIVASFPIAFFFFMQFTMPENFDFLINDPSGRYVLYYVFGSELIGMLIIWWLMR 291


>gi|107022597|ref|YP_620924.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
 gi|116689546|ref|YP_835169.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
 gi|105892786|gb|ABF75951.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
 gi|116647635|gb|ABK08276.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
          Length = 326

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 79/186 (42%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I +R  K +   P+ LD IVR V  G  V  A    +  +  P+R     V     
Sbjct: 141 ITSRISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQSALQTAEMPLRRCLDDVSRMLR 200

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  +     ++E      V+ +  + GG     L  +S  +RD +  + ++ 
Sbjct: 201 SGVDIDRAMLHIAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEQAERELS 260

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SAW++  LP  V + V  TSP Y   + ND  G  L+ +A     IG   + 
Sbjct: 261 AMSAETRLSAWVLALLPIAVGSFVIATSPRYFTAMWNDDAGRQLVYLAFVLQAIGGFWLF 320

Query: 181 LMINFD 186
            +    
Sbjct: 321 RLARLR 326


>gi|331092046|ref|ZP_08340877.1| hypothetical protein HMPREF9477_01520 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402247|gb|EGG81818.1| hypothetical protein HMPREF9477_01520 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 251

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 78/192 (40%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55
           K   K+R  KF   F  AL  +   +  G  + +A+  +  +          +  EF  +
Sbjct: 60  KEYAKRRKEKFQKQFKEALQSLRTVLNVGYSIENAIREVKKEMTTLYGEDALITKEFSYL 119

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           +    + + + ++       + + EV+ F T++S   + GG++   L      +  +  +
Sbjct: 120 VRQLEMNIPVEQAWKTFADRVEMSEVTHFVTILSTIKRSGGDMIAVLRQTIETICMKLEV 179

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + ++  + +  +    I+ ++P  +   +  + P +++VL  +  G +++ V        
Sbjct: 180 QQEIYTIIVAKQMEFRIMSAIPMGIIVYLKMSFPEFLSVLYQELVGKVVMTVCLLIYFAA 239

Query: 176 IMVMRLMINFDV 187
               + ++  +V
Sbjct: 240 YQWGKKILEIEV 251


>gi|260365460|ref|ZP_05777997.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030]
 gi|260877525|ref|ZP_05889880.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034]
 gi|260897534|ref|ZP_05906030.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466]
 gi|260901736|ref|ZP_05910131.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037]
 gi|308087149|gb|EFO36844.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466]
 gi|308090878|gb|EFO40573.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034]
 gi|308108899|gb|EFO46439.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037]
 gi|308114317|gb|EFO51857.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030]
          Length = 304

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 87/175 (49%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
            +F D+FP+AL+I+  ++ +G  +  A   +  Q  + V  EF+++ E   +G    + +
Sbjct: 127 QRFKDNFPDALNILSGALSSGQSIVHAFEYVGTQLDNEVGEEFKKMSERLLIGEDPDDVL 186

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
           +R     P  E  FF+  I +    GG L + +  ++RI+ + + ++ K  AL+ EA+AS
Sbjct: 187 ARSAASFPYVEYFFFAATIRINLSRGGQLKDVINRINRIMFEARAIEKKKNALTSEARAS 246

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           A II +LP     ++  TSP   N ++ +  G  +         IG   + +++ 
Sbjct: 247 AKIIAALPVIFIMILKVTSPENYNFVMFEEGGKPIFYYVLVSEAIGFFFIYMILR 301


>gi|59711124|ref|YP_203900.1| TadB-like protein involved in pilus formation and/or protein
           secretion [Vibrio fischeri ES114]
 gi|59479225|gb|AAW85012.1| TadB-like protein involved in pilus formation and/or protein
           secretion [Vibrio fischeri ES114]
          Length = 305

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 87/182 (47%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L +K   +F + FP+AL+++  +V AG  ++ A+A +  +    V  EF+ + E   LG
Sbjct: 121 WLQEKEKKQFNERFPDALNMLSSAVSAGESITHAIAFVGKKLEGDVGKEFKIMGERLQLG 180

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S  E   +     P     FF   +      GG L + ++ L+R++ D + ++ K  AL
Sbjct: 181 ESPDEVFKKSCVRFPYPAFRFFVITLRANMNRGGQLRDVISRLNRLMFDARAVERKKYAL 240

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ SA I+ + PF    ++ F SP     ++    G  +L        IG++++  +
Sbjct: 241 TSEARISAKIVCATPFFFLFILQFLSPENYEFVMFHAEGRPILYYVLISEAIGMLIIWGL 300

Query: 183 IN 184
           + 
Sbjct: 301 LK 302


>gi|317133735|ref|YP_004089646.1| Type II secretion system F domain [Ruminococcus albus 7]
 gi|315450197|gb|ADU23760.1| Type II secretion system F domain [Ruminococcus albus 7]
          Length = 292

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 90/186 (48%), Gaps = 2/186 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIET 58
           + +  KK    F + +  AL  +  S+RAG+ +  AV  +         ++ EFR++   
Sbjct: 101 VSYTEKKHKKNFEERYARALRQLSSSLRAGMTLQQAVEDLCKCPFIHYEIKKEFRQINSD 160

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             LG S+SE+   M   +P  +V    + I +QS +GG+ +E++  ++  +  R  ++ +
Sbjct: 161 IQLGFSISEAFGHMAERIPTADVKDVVSAIKMQSLVGGSEAESIEIITNNINSRMMLRKE 220

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           ++ L    K +   +  LP  +   +Y++SP Y   L +   G ++  +A   M+IG  +
Sbjct: 221 IKTLFASTKMTIIGMDILPAIIILFLYYSSPMYFRPLFSTLIGRLVFVLAIILMVIGSYI 280

Query: 179 MRLMIN 184
            R  +N
Sbjct: 281 DRKFLN 286


>gi|13471028|ref|NP_102597.1| integral membrane protein [Mesorhizobium loti MAFF303099]
 gi|14021772|dbj|BAB48383.1| probable integral membrane protein [Mesorhizobium loti MAFF303099]
          Length = 301

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 100/175 (57%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           F    P AL++I R ++AG PV  A+A++  +  DP+ +EF  + +    G  L  +++ 
Sbjct: 126 FGMQLPEALELITRGLKAGHPVPVAIAMVSREMPDPIGTEFGVIADEVTYGSDLVSALNS 185

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +   +  +++  F T +S+QS  GGNL E L  L+  +R+R  ++ KV+A+S E + SA+
Sbjct: 186 LFDRVGHEDLPLFITAVSIQSSSGGNLREILDGLALTIRERGKLRRKVRAISTEGRMSAY 245

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           I+ ++P  +   +    PG+   + ++P+   L+G +  ++++G ++M  M NF 
Sbjct: 246 ILTAIPALLFAAIMALMPGFYRDVWDEPKTWYLIGGSVTWLMLGNLMMFKMSNFR 300


>gi|302384577|ref|YP_003820399.1| Type II secretion system F domain protein [Clostridium
           saccharolyticum WM1]
 gi|302195205|gb|ADL02776.1| Type II secretion system F domain protein [Clostridium
           saccharolyticum WM1]
          Length = 245

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 88/192 (45%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55
             L KKR  +   +F   + ++   + AG  V +A +  V +          V  EF  +
Sbjct: 54  SELKKKRLQQLNLEFKEGILLLASFLSAGYSVENAFSASVKELVILYGEEGMVSMEFGHI 113

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           +    +  S+ +++S       L +V  F+ V +   + GG L   +++ + ++RD+  +
Sbjct: 114 VSQIRINRSVEQALSEFAGRSGLDDVKNFAEVFAAAKRSGGELVSIISHTAAVIRDKMQV 173

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + ++  ++   +    I+  +PF +   +  TSPG+ N++ N   G +L+ +  A  +  
Sbjct: 174 RQEILTMTASKQFEQKIMTMIPFFIVLYIDMTSPGFFNIMYNTGIGRILMTLCLAVYIGA 233

Query: 176 IMVMRLMINFDV 187
           I + R ++  ++
Sbjct: 234 IAIARHIMKIEI 245


>gi|283787696|ref|YP_003367561.1| tight adherence protein B [Citrobacter rodentium ICC168]
 gi|282951150|emb|CBG90841.1| putative tight adherence protein B [Citrobacter rodentium ICC168]
          Length = 300

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 81/176 (46%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
              F   F  AL+II  +V AG  +   +     + S  V  EF  + +   +G  +   
Sbjct: 123 RQAFETGFAEALNIIGGAVGAGNSLLHGIEQSGQKVSGIVGEEFTIISQRLEIGEDVESV 182

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                  +  +E  FF   + +  + GG + E +++L++++ + + M  +  A + E +A
Sbjct: 183 FMDSYERLFYREYFFFVIAVLINMRGGGEVKEIVSHLAKLISNARLMDRQKLAKTAEPRA 242

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           S  I+  +P      + F SP   +VL++DP G MLL    A  L+G+  +  MIN
Sbjct: 243 SIKILMVIPVGFFFFLKFLSPENFDVLLHDPTGQMLLYYCIASELLGLFWVWTMIN 298


>gi|284029667|ref|YP_003379598.1| type II secretion system protein [Kribbella flavida DSM 17836]
 gi|283808960|gb|ADB30799.1| type II secretion system protein [Kribbella flavida DSM 17836]
          Length = 286

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 3/186 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   +KR A+F + +P+ +D I  +VRAGL +S+A+A +  +   P+R  FRR      
Sbjct: 95  LKSRARKRLAEFRELWPDVVDNIASAVRAGLSLSEALAQVGERGPLPLREPFRRFGADYA 154

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKV 119
                +ES+ R+   +           + +  +  GG+L   L +LS  LRD    ++++
Sbjct: 155 STGRFAESLDRLKARLADPVGDRVVEALRIAREVGGGDLGRLLRSLSSFLRDDARTRSEL 214

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           ++    +   A +  + P+ V  L+ F          N P G +++G+ AA  ++   VM
Sbjct: 215 ESRQSWSVNGARVAVAAPWLVLGLLSFQGDVIQR--YNSPVGALVIGIGAAVCVLAYRVM 272

Query: 180 RLMINF 185
             +   
Sbjct: 273 LRIGRL 278


>gi|167620220|ref|ZP_02388851.1| hypothetical protein BthaB_28195 [Burkholderia thailandensis Bt4]
          Length = 242

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 84/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V     
Sbjct: 57  LASRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTDAPLRGCLDHVSRMLR 116

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 117 SGVEIDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 176

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   + 
Sbjct: 177 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPMGRQLVYLAFILQVAGGYWLY 236

Query: 181 LMINFD 186
            +    
Sbjct: 237 RLARLR 242


>gi|221070077|ref|ZP_03546182.1| type II secretion system protein [Comamonas testosteroni KF-1]
 gi|220715100|gb|EED70468.1| type II secretion system protein [Comamonas testosteroni KF-1]
          Length = 322

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 85/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +K  A+     P  LD  VR V  G  V  A  +    + DP++S   +      
Sbjct: 133 LYARAQKFRARLTQQLPGFLDNTVRLVTIGNSVQAAFQMAAASTKDPLQSVMEKAASLAR 192

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ L  +++ + R   L E+   + ++ +  + GG +   L  ++  +RDR+  +  + 
Sbjct: 193 AGMDLENAVAHVARQTRLDELHLLAAILRISVRYGGRVDLLLERVANFMRDREQAEQDLS 252

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + SAW++  LP  V  L+   +  Y   + ND  G  ++  AAA  + G++++ 
Sbjct: 253 AMTAEIRMSAWVLSLLPVAVCCLIISFNASYFLNMWNDASGRNIIWAAAALQVFGVLLLY 312

Query: 181 LMINFD 186
            M   D
Sbjct: 313 RMAKLD 318


>gi|153836331|ref|ZP_01988998.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810]
 gi|149750233|gb|EDM60978.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810]
 gi|328470522|gb|EGF41433.1| putative TadB protein [Vibrio parahaemolyticus 10329]
          Length = 304

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 87/175 (49%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
            +F D+FP+AL+I+  ++ +G  +  A   +  Q  + V  EF+++ E   +G    + +
Sbjct: 127 QRFKDNFPDALNILSGALSSGQSIVHAFEYVGTQLENEVGEEFKKMSERLLIGEDPDDVL 186

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
           +R     P  E  FF+  I +    GG L + +  ++RI+ + + ++ K  AL+ EA+AS
Sbjct: 187 ARSAASFPYVEYFFFAATIRINLSRGGQLKDVINRINRIMFEARAIEKKKNALTSEARAS 246

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           A II +LP     ++  TSP   N ++ +  G  +         IG   + +++ 
Sbjct: 247 AKIIAALPVIFIMILKVTSPENYNFVMFEEGGKPIFYYVLVSEAIGFFFIYMILR 301


>gi|296133932|ref|YP_003641179.1| Type II secretion system F domain protein [Thermincola sp. JR]
 gi|296032510|gb|ADG83278.1| Type II secretion system F domain protein [Thermincola potens JR]
          Length = 278

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 85/194 (43%), Gaps = 7/194 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFR 53
           ++ LI KR A+    F +AL  +  S+  G  +  A    +          +  +  EF 
Sbjct: 85  VQDLITKRKAELQLQFKDALYSLTSSLGVGRSLESAFKTALNDLRVLYPDENTYIIKEFG 144

Query: 54  RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
            +     L   +  ++        L+++  F+ V+ +  + GGNL + + N S IL D+ 
Sbjct: 145 YICRKIELNEPVETALLDFAERSGLEDIKNFAEVMVICKRTGGNLVQVVKNTSAILSDKI 204

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
            +  +++ L  + K    I+  +P     LV F   GYM+ L    +G++L+ +A   ++
Sbjct: 205 EISQEIELLLTKQKYEQKILNIMPIVFIGLVKFGGSGYMDSLYTSIKGYLLMALALGILI 264

Query: 174 IGIMVMRLMINFDV 187
              +V + + +  V
Sbjct: 265 AASVVSKKIFDIKV 278


>gi|119715489|ref|YP_922454.1| type II secretion system protein [Nocardioides sp. JS614]
 gi|119536150|gb|ABL80767.1| type II secretion system protein [Nocardioides sp. JS614]
          Length = 284

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 78/186 (41%), Gaps = 3/186 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R  +  + +P A+D +  +VRAG+ + DA+A +  +  +P+R  F +      
Sbjct: 93  VSGRARRRQRELAEVWPEAVDNLTSAVRAGMSLPDALAGLGSRGPEPLRDAFDQFALDYQ 152

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKV 119
           +     E + R+   +           + +  ++GG  L   L NLS  LRD    ++++
Sbjct: 153 VTGRFGECLDRLKERLADPVGDRVVEGLRIAREVGGGELGRLLRNLSSYLRDDARTRSEL 212

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +A        A +  + P+ V   + F S          P G ++L V A   ++   +M
Sbjct: 213 EARQAWTVNGARLAVASPWLVLLFMSFQSEVIHR--YASPGGVLVLAVGAGACVVAYRLM 270

Query: 180 RLMINF 185
             +   
Sbjct: 271 MRIGRL 276


>gi|67641291|ref|ZP_00440072.1| type II secretion system protein [Burkholderia mallei GB8 horse 4]
 gi|121598780|ref|YP_993095.1| type II secretion system protein [Burkholderia mallei SAVP1]
 gi|124386324|ref|YP_001026128.1| hypothetical protein BMA10229_A0120 [Burkholderia mallei NCTC
           10229]
 gi|126449995|ref|YP_001080600.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
 gi|167002478|ref|ZP_02268268.1| type II secretion system protein [Burkholderia mallei PRL-20]
 gi|254178697|ref|ZP_04885352.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
 gi|254206226|ref|ZP_04912578.1| type II secretion system protein [Burkholderia mallei JHU]
 gi|121227590|gb|ABM50108.1| type II secretion system protein [Burkholderia mallei SAVP1]
 gi|124294344|gb|ABN03613.1| putative membrane protein [Burkholderia mallei NCTC 10229]
 gi|126242865|gb|ABO05958.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
 gi|147753669|gb|EDK60734.1| type II secretion system protein [Burkholderia mallei JHU]
 gi|160699736|gb|EDP89706.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
 gi|238522200|gb|EEP85646.1| type II secretion system protein [Burkholderia mallei GB8 horse 4]
 gi|243061819|gb|EES44005.1| type II secretion system protein [Burkholderia mallei PRL-20]
          Length = 306

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 84/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V     
Sbjct: 121 LVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 180

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 181 SGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 240

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   + 
Sbjct: 241 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLY 300

Query: 181 LMINFD 186
            +    
Sbjct: 301 RLARLR 306


>gi|206559897|ref|YP_002230661.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
 gi|198035938|emb|CAR51830.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
          Length = 326

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 80/186 (43%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I +R  K +   P+ LD IVR V  G  V  A    +  +  P+R     V +   
Sbjct: 141 ITSRISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQSALQTAEMPLRRCLDDVSQMLR 200

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  +     ++E      V+ +  + GG     L  +S  +RD +  + ++ 
Sbjct: 201 SGVEIDRAMLHIAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEQAERELS 260

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SAW++  LP  V + V  TSP Y   +  D  G  L+ +A A   IG   + 
Sbjct: 261 AMSAETRLSAWVLALLPIAVGSFVIATSPRYFTAMWGDDNGRQLIYLAFALQAIGGFWLY 320

Query: 181 LMINFD 186
            +    
Sbjct: 321 RLARLR 326


>gi|284989774|ref|YP_003408328.1| Type II secretion system F domain-containing protein
           [Geodermatophilus obscurus DSM 43160]
 gi|284063019|gb|ADB73957.1| Type II secretion system F domain protein [Geodermatophilus
           obscurus DSM 43160]
          Length = 285

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 71/186 (38%), Gaps = 3/186 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ L  KR A   + +P  +D +  +VRAGL + +A++ +  +  + +R  F R      
Sbjct: 94  VRRLAVKRRADLREVWPEVVDNLASAVRAGLSLPEALSALSTRGPEVLRPPFARFAAEYR 153

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVI-SVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                   + R+   +           +   +   G +L   L  LS  LR+    +A++
Sbjct: 154 SSGRFGNGLDRLKDDLADPVGDRIVETLRVAREVGGSDLGRVLRTLSSFLREDARARAEL 213

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +        +A +  + P+ V  L+   S        + P G  +L   AA  L    +M
Sbjct: 214 ETRQGWVVQAARLAVAAPWVVLLLLATQSATLEA--YDSPLGTAILLGGAAVCLASYRLM 271

Query: 180 RLMINF 185
             +   
Sbjct: 272 LRIGRL 277


>gi|330873644|gb|EGH07793.1| hypothetical protein PSYMP_04410 [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 295

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 95/184 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     
Sbjct: 110 VSWRYERRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIELNVQ 169

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+SL +++          E   F+  + V  + GGN SE + NL +++RDR+    +++
Sbjct: 170 LGVSLPDAVRDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 229

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + +A ++G LP  ++      +P Y+  + ND  G ++L +A    ++G +++ 
Sbjct: 230 AMTGETRMTAIVLGLLPVSMAGYFLAVNPDYLLHMWNDGSGQIMLSMAFGLQVLGCLMLW 289

Query: 181 LMIN 184
            M+ 
Sbjct: 290 RMLR 293


>gi|257790637|ref|YP_003181243.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|257474534|gb|ACV54854.1| type II secretion system protein [Eggerthella lenta DSM 2243]
          Length = 296

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 90/187 (48%), Gaps = 4/187 (2%)

Query: 3   HLIKKR---TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           +L  +R     KF +    A+ +I  ++RAG  V+ A+  +    SDP++SEFRR+    
Sbjct: 109 YLKVRRDSGKKKFEEQLGQAMPLIASNLRAGSSVAQAIGPVAENMSDPIKSEFRRLTSDI 168

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G  + E++ ++      +++  F+T + +  Q GG+L++   N+ + +R R   +  +
Sbjct: 169 RAGTPVPEALDKVADRTGSRDLRLFATAVDISQQTGGSLADITENVGQTVRARVEARKAI 228

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           ++ +   +  + I+  LP  +   +   SP +     + P G  L+ +A     +  ++M
Sbjct: 229 RSKTSLNRIESQIMVGLPVFMMAALLAISPSH-REFYSQPSGWALIALAVVLDTLAYLMM 287

Query: 180 RLMINFD 186
           R M +  
Sbjct: 288 RKMGDVK 294


>gi|310822672|ref|YP_003955030.1| type II secretion system protein f domain-containing protein
           [Stigmatella aurantiaca DW4/3-1]
 gi|309395744|gb|ADO73203.1| type II secretion system protein F domain protein [Stigmatella
           aurantiaca DW4/3-1]
          Length = 281

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 100/187 (53%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+  K+R  KF     +AL  +  + +AGL    A+  +  ++  P+  EF   ++   
Sbjct: 95  VKYYRKRRIKKFNVQLVDALQAMANAFKAGLTFPQAIEHVAREALPPLSQEFGLFVKEVK 154

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L E++  M + +   ++       ++  QLGGN++E    +S ++R+R  ++ K+ 
Sbjct: 155 LGVPLEEALINMGKRVGSDDLELVVVSTNIARQLGGNMAEMFETISMVIRERFRLEGKID 214

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ + K   WI+ S+P  +  ++    P  M  +++   G++L+ V A   ++GI+++R
Sbjct: 215 ALTSQGKLQGWIVASMPAVLGMVLNSMRPDLMEPMMDHMFGYVLVTVIAIMEILGILIIR 274

Query: 181 LMINFDV 187
            ++N D+
Sbjct: 275 RIVNIDI 281


>gi|148976303|ref|ZP_01813027.1| TadB-like protein involved in pilus formation and/or protein
           secretion [Vibrionales bacterium SWAT-3]
 gi|145964397|gb|EDK29652.1| TadB-like protein involved in pilus formation and/or protein
           secretion [Vibrionales bacterium SWAT-3]
          Length = 302

 Score = 96.0 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 83/182 (45%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +  K +  +F     + L +I R+V AGL V  A+  +       +  EF  + +   LG
Sbjct: 115 YRRKLQVEEFEKSIISVLGLISRAVSAGLSVPQAIDQVAQNEQGLLGREFSYIRDNLALG 174

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           LSL +++      +P     +FS  + +    GG L + L  LSR + D + M+ KV++L
Sbjct: 175 LSLRDTLEDACIRLPYHSFRYFSVALILNQSNGGQLRDILQGLSRTMHDNRAMRKKVKSL 234

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E + +A  +  LP  +   + +  P   + LIN   G  +L    + +  G +++  +
Sbjct: 235 TSEPRMTALFLSLLPIGLIGSIAWIEPTMADRLINTESGQNVLIYVLSSICFGTLILNSL 294

Query: 183 IN 184
             
Sbjct: 295 TR 296


>gi|330963435|gb|EGH63695.1| hypothetical protein PSYAC_02057 [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 295

 Score = 96.0 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 95/184 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     
Sbjct: 110 VSWRYERRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIELNVQ 169

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+SL +++          E   F+  + V  + GGN SE + NL +++RDR+    +++
Sbjct: 170 LGVSLPDAVRDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 229

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + +A ++G LP  ++      +P Y+  + ND  G ++L +A    ++G +++ 
Sbjct: 230 AMTGETRMTAIVLGLLPVSMAGYFLAVNPDYLLHMWNDGSGQIMLSMAFGLQVLGCLMLW 289

Query: 181 LMIN 184
            M+ 
Sbjct: 290 RMLR 293


>gi|84386793|ref|ZP_00989818.1| TadB-like protein involved in pilus formation and/or protein
           secretion [Vibrio splendidus 12B01]
 gi|84378321|gb|EAP95179.1| TadB-like protein involved in pilus formation and/or protein
           secretion [Vibrio splendidus 12B01]
          Length = 304

 Score = 96.0 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 83/182 (45%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +  K +  +F     N L +I R+V AGL V  A+  +       +  EF  + +   LG
Sbjct: 117 YRRKMQVEEFEQGIINVLGLISRAVAAGLSVPQAIEQVSETQPGLLGREFSYIRDNLTLG 176

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           LSL +S+      +P     +FS  + +    GG L + L +LSR + D + M+ KV++L
Sbjct: 177 LSLRQSLDDACVRLPYSSFRYFSVALILNQSNGGQLRDILQSLSRTMHDNRAMRKKVKSL 236

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E + +A  +  LP  +   +Y   P  +  L N   G  +L  A   +  G +++  +
Sbjct: 237 TSEPRMTALFLSILPLGLLGGIYLMEPAMIVQLFNTESGQRVLTYAIISISSGTLILNAL 296

Query: 183 IN 184
             
Sbjct: 297 TR 298


>gi|167902895|ref|ZP_02490100.1| type II secretion system protein [Burkholderia pseudomallei NCTC
           13177]
          Length = 264

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 84/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V     
Sbjct: 79  LVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 138

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 139 SGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 198

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   + 
Sbjct: 199 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLY 258

Query: 181 LMINFD 186
            +    
Sbjct: 259 RLARLR 264


>gi|209545601|ref|YP_002277830.1| type II secretion system protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209533278|gb|ACI53215.1| type II secretion system protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 317

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 59/179 (32%), Positives = 108/179 (60%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++  AK     P+AL +IVRS+R G+P+S A+ ++  ++  P   EFR + +   +G SL
Sbjct: 135 RRYAAKLFQQLPDALGMIVRSLRVGIPLSRALIIVGQEAEYPTADEFRMISQDVAVGKSL 194

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++  +     LQE  FF+T++++Q+Q GG L++ LA+ + ++R R   + +  AL+ E
Sbjct: 195 GDTLHNLAERTGLQEYRFFATIMALQAQTGGTLADVLASFADMIRQRIAARKRGHALASE 254

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           A+ S +++G +PF +  ++   +P YM V +    GHMLLGV+A  + +G   MR ++ 
Sbjct: 255 ARMSCYVLGGIPFAIGGIMSIINPDYMAVFLTTHMGHMLLGVSALMLGLGFGSMRFIMK 313


>gi|294139874|ref|YP_003555852.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12]
 gi|293326343|dbj|BAJ01074.1| Flp pilus assembly protein TadB, putative [Shewanella violacea
           DSS12]
          Length = 311

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/178 (26%), Positives = 90/178 (50%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
             +F   FP  L  I R+V AG+ V  A+A +       +  EF  + +   +G+SL ++
Sbjct: 133 MKQFDHAFPQVLGQISRAVAAGISVPQAIAQVSEYQQGFLGREFELIRDRLAIGISLKQT 192

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           + +    +P     FF+  + +  + GG L E L +L R L D   +K K+++L+ E + 
Sbjct: 193 LEQACYRLPYASFHFFTVALILNQENGGQLREVLHSLGRTLHDNGAIKMKIKSLTAEPRM 252

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           +A I+ SLP  + ++++F +P    VL N   GH +L    + + +G+ ++ ++    
Sbjct: 253 TALILASLPLILISIMFFKNPTSFAVLTNTQTGHHVLVYVVSSIALGLGIINMLTKVR 310


>gi|226196404|ref|ZP_03791986.1| type II secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|225931621|gb|EEH27626.1| type II secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
          Length = 316

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 84/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V     
Sbjct: 131 LVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 190

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 191 SGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 250

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   + 
Sbjct: 251 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLY 310

Query: 181 LMINFD 186
            +    
Sbjct: 311 RLARLR 316


>gi|317403409|gb|EFV83922.1| hypothetical protein HMPREF0005_02048 [Achromobacter xylosoxidans
           C54]
          Length = 281

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 92/176 (52%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           F    P AL ++  ++RAG+ +  A+  +V Q   P+  EF  ++  Q LG+   E+++R
Sbjct: 106 FEQQLPMALLMLASALRAGVALMPALRQVVAQGGAPLAQEFGLMLREQRLGVPWDEALAR 165

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +   M  +  +     +    Q GGNL+EAL ++++ L  R  ++A+++ L+ + +  AW
Sbjct: 166 LNTRMTAESTTLMVAAMRTAVQTGGNLAEALDSIAQTLFARLQLQARLRTLTAQGRMQAW 225

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           I+G+LP  +   +    P  M  L + P G  +L V       G++++R ++  D+
Sbjct: 226 IVGALPVLLLIALDRLEPDIMMPLWHTPAGWTVLAVLGGLETAGVLLIRRIVRIDI 281


>gi|318604218|emb|CBY25716.1| flp pilus assembly protein TadB [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 293

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 82/183 (44%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   K+    F  +FP +L +I  +  +G  ++  +     + S P+  EF  V    +
Sbjct: 107 LRLSRKRYYRFFKQNFPESLLMINMAASSGASINQILERCGQEISGPLGVEFNLVCRRLN 166

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S         R     E  F  T+I +  Q GG L E  + LS ++   K  + K  
Sbjct: 167 VGESPESVFYDSYRRFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKA 226

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++ + + S  II  +P   S L+YF  P  +  + + P G ++    +   +IG++V+R
Sbjct: 227 VMTAQIRMSVNIISIMPIAFSLLLYFLDPTTIESMWHHPIGKIVYYYISISEIIGMIVIR 286

Query: 181 LMI 183
            M+
Sbjct: 287 KML 289


>gi|330862290|emb|CBX72451.1| hypothetical protein YEW_HH31830 [Yersinia enterocolitica W22703]
          Length = 293

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 82/183 (44%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   K+    F  +FP +L +I  +  +G  ++  +     + S P+  EF  V    +
Sbjct: 107 LRLSRKRYYRFFKQNFPESLLMINMAASSGASINQILERCGQEISGPLGVEFNLVCRRLN 166

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S         +     E  F  T+I +  Q GG L E  + LS ++   K  + K  
Sbjct: 167 VGESPESVFYDSYQRFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKA 226

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++ + + S  II  +P   S L+YF  P  +  + + P G ++    +   +IG++V+R
Sbjct: 227 VMTAQIRMSVNIISIMPIAFSLLLYFLDPTTIESMWHHPIGKIVYYYISISEIIGMIVIR 286

Query: 181 LMI 183
            M+
Sbjct: 287 KML 289


>gi|89100215|ref|ZP_01173082.1| putative integral membrane protein [Bacillus sp. NRRL B-14911]
 gi|89085065|gb|EAR64199.1| putative integral membrane protein [Bacillus sp. NRRL B-14911]
          Length = 308

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 96/184 (52%), Gaps = 1/184 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
              K T +  +    A  ++  + ++G+ ++  + V+  + + P R EF+ + +   LGL
Sbjct: 126 RKNKYTEQLNNQLSEACRLLGNATKSGMTITQGLEVVASEINSPAREEFKVLTQNLRLGL 185

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
               +++ M + +  +E   F + + +Q + GGNL++ L  +++ L +RK ++  ++  +
Sbjct: 186 DFERALAEMEKRIKTREYKLFISALMIQKRSGGNLTKVLYEMAQTLEERKILRQTIKTAT 245

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E +  ++I+ ++P  +  ++     G+++++   P G +L+ +    M + ++++R + 
Sbjct: 246 AEQRFVSYILPAMPIFLLFMLNNIMDGFIDLIFTVP-GAILMTIFIIGMAVALILVRAVT 304

Query: 184 NFDV 187
           N  V
Sbjct: 305 NIKV 308


>gi|167919155|ref|ZP_02506246.1| type II secretion system protein [Burkholderia pseudomallei BCC215]
          Length = 256

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 84/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V     
Sbjct: 71  LVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 130

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 131 SGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 190

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   + 
Sbjct: 191 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLY 250

Query: 181 LMINFD 186
            +    
Sbjct: 251 RLARLR 256


>gi|325275752|ref|ZP_08141630.1| type II secretion system protein [Pseudomonas sp. TJI-51]
 gi|324099112|gb|EGB97080.1| type II secretion system protein [Pseudomonas sp. TJI-51]
          Length = 293

 Score = 95.2 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 98/184 (53%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++     ++  P  LD  VRS++AG  ++DAV   +  S +P+R+   RV     
Sbjct: 108 ISWQSRRHMRHVVEQLPGLLDYSVRSLKAGRTLNDAVLGAIDSSREPLRTTLARVRRNVQ 167

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L ++++ +       E+  F+  + +  + GGN SE + NL +++R+R+    +++
Sbjct: 168 LGVPLEDAMTELAELHQQDELRLFALGLRINQRHGGNASELMENLIKLIREREQGARQLK 227

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + +A I+G+LP  +       +P Y+  +  D  G ++L +A A  ++G +V+ 
Sbjct: 228 AMTGETRITAIILGALPLAMVGYFLLANPHYLLAMWRDSSGQLMLLLAFALQVLGCLVLW 287

Query: 181 LMIN 184
            M+ 
Sbjct: 288 RMMR 291


>gi|167587312|ref|ZP_02379700.1| type II secretion system protein [Burkholderia ubonensis Bu]
          Length = 261

 Score = 95.2 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 80/186 (43%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I +R  + +   P+ LD IVR V  G  V  A    +  +  P+R     V     
Sbjct: 76  LVSRIHRRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQAALLTTEAPLRGCLDVVSRMLR 135

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  + +    +E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 136 TGVEIDRAMVHIAKVYHTREFELVGSVLRLSVRYGGRADVMLERMAVFMRDLEQAERELV 195

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SAW++  LP  +   V  T+P Y++ + ND  G   L +A    + G   + 
Sbjct: 196 AMSSETRLSAWVLVMLPIAIGGFVIATNPSYLSSMWNDDSGRAYLYLAFIMQIAGGAWLY 255

Query: 181 LMINFD 186
            M    
Sbjct: 256 RMSRLR 261


>gi|317124420|ref|YP_004098532.1| type II secretion system F domain [Intrasporangium calvum DSM
           43043]
 gi|315588508|gb|ADU47805.1| Type II secretion system F domain [Intrasporangium calvum DSM
           43043]
          Length = 291

 Score = 95.2 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 75/186 (40%), Gaps = 3/186 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   +KR  K  D +P+A+D I   VRAGL + +A+A +  +  + +R  F R  E   
Sbjct: 100 IRMRARKRRGKLRDLWPDAVDNITSGVRAGLALPEALAQLAVRGPEELRPPFARFAEDYR 159

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKV 119
                 + + R+   M           + +  +  G +L   L  LS  LR+    +A++
Sbjct: 160 ATGRFHDCLDRLKDAMSDPVADRLIESLRIAREVGGSDLGRLLRTLSAFLREDARTRAEL 219

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +A       +A +  + P+ V  ++              P G ++L   A   ++   +M
Sbjct: 220 EARQSWTINAARLAVAAPWVVLAMLALRGGSLQA--YATPTGWLVLAFGAGLCIVAYRLM 277

Query: 180 RLMINF 185
             +   
Sbjct: 278 VWIGRL 283


>gi|226310158|ref|YP_002770052.1| hypothetical protein BBR47_05710 [Brevibacillus brevis NBRC 100599]
 gi|226093106|dbj|BAH41548.1| conserved hypothetical membrane protein [Brevibacillus brevis NBRC
           100599]
          Length = 306

 Score = 95.2 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 90/184 (48%), Gaps = 1/184 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
              K   +  +       ++  S+RAGL +S  ++++  + + P   EF R+     LG+
Sbjct: 124 RRNKYQERLNEQLSEVCRLLANSLRAGLTLSQGISLVAKEMNYPAGDEFSRMARELQLGV 183

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S   ++S M + +P +E   F+  + +Q + GGNLS+ L  ++  L DR+ +  +++ ++
Sbjct: 184 SFDRALSDMEKRIPTREFRIFTATLLIQRRAGGNLSQVLQEMAETLEDRRIVNQEIKTMT 243

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E +  + ++  +P  +  ++   + G+++ L +     +L        L+  ++++ + 
Sbjct: 244 AEQRYVSILVPIMPVALVLMMNTMNKGFIDPLFSGFGLFLLGLFVIG-TLLSYILVKKVT 302

Query: 184 NFDV 187
           N  V
Sbjct: 303 NIKV 306


>gi|117620900|ref|YP_855995.1| Flp pilus assembly protein TadB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562307|gb|ABK39255.1| Flp pilus assembly protein TadB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 294

 Score = 95.2 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 95/184 (51%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L ++   +F    P  +D ++R++R G P++D   ++  Q    +   F ++ +   +
Sbjct: 109 QQLQQRALEQFRTRLPEVIDGMIRALRVGAPLADIFLLVARQQRGLMSRLFAQMHDELQV 168

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  +++ + +    + + E  F + V+S+Q + GG LSE LA L   LR R+ + A +Q 
Sbjct: 169 GQPVAQVMQQAAGRVAVAEFQFLTIVLSLQQETGGRLSEVLAQLVETLRARQTLAASIQT 228

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ E++ +A ++ +LP  +  +++ T   +   L+    G  +LG  +  + +G+ ++R 
Sbjct: 229 ITAESRNAAKVLAALPVIILLVLFTTGREHFTYLMTTTSGQWVLGYVSISVAVGLWLIRR 288

Query: 182 MINF 185
           +   
Sbjct: 289 LTRL 292


>gi|260778158|ref|ZP_05887051.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606171|gb|EEX32456.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 301

 Score = 94.8 bits (234), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 83/181 (45%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             KK+  +F  +    L ++ R+V AGL V  A+  +    +  +  EF  + +   LG+
Sbjct: 116 RRKKQIEEFDTNIVQVLGLVSRAVSAGLSVPQAIEQVANSQTGLLGREFALITDNLALGI 175

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           SL +++      +P +   +FS  + +    GG L E L NLSR + D + M  KV++++
Sbjct: 176 SLRQTLDEACTRLPYRTFRYFSVALILNQSNGGQLREILHNLSRTMHDNRAMLKKVKSMT 235

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + +A  +  LP  +  +V +       +L+    G  +L   AA +  G   +  + 
Sbjct: 236 AEPRMTAKFLSLLPLILVAVVAWIDVSLFELLVYTESGQSILIYCAASIAFGGFTLHSLT 295

Query: 184 N 184
            
Sbjct: 296 K 296


>gi|225386975|ref|ZP_03756739.1| hypothetical protein CLOSTASPAR_00725 [Clostridium asparagiforme
           DSM 15981]
 gi|225046987|gb|EEG57233.1| hypothetical protein CLOSTASPAR_00725 [Clostridium asparagiforme
           DSM 15981]
          Length = 308

 Score = 94.8 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 87/190 (45%), Gaps = 6/190 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ------SSDPVRSEFRRVIE 57
           L ++R  +   +F + + ++   + AG  + +AVA    +      +   +  EF  +  
Sbjct: 119 LKRQRLCRLNLEFKDGILVLASFLSAGYSIENAVAASGRELTLLYGADGLMAGEFEEMAR 178

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              L  ++      +     L++V+ F+ V +   + GG+L E +++ + ++RD+  ++ 
Sbjct: 179 GLRLNRTVESVFLDLGGRSGLEDVNNFAQVFAAAKRSGGDLVEIISHTAGVIRDKVQVQE 238

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           ++  ++        I+  +P  +   +  TSPG+ +++     G +++    A   I ++
Sbjct: 239 EIHTMTASKAFEQKIMSLVPVLIVLYIDLTSPGFFDIMYRTMAGRLVMSGCLAVYGISLL 298

Query: 178 VMRLMINFDV 187
           + R ++  ++
Sbjct: 299 LARRILQVEI 308


>gi|320158387|ref|YP_004190765.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
 gi|319933699|gb|ADV88562.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
          Length = 305

 Score = 94.8 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 90/182 (49%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L + + AKF +DFP+AL+I+  ++ +G  +  A   +  Q  + V  +F+ + E   +G
Sbjct: 120 KLQQAKAAKFKEDFPDALNILSGALSSGQSIVHAFEYVGNQLQNEVGKQFKLMAERLLMG 179

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
               + +SR     P  E  FF+  I +    GG L E ++ ++RI+ + + +  K  AL
Sbjct: 180 EDPDDVLSRSAASFPYVEYFFFAATIRINLSRGGQLKEVISRINRIMFEARAIDKKKNAL 239

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ SA II  LP     ++ FTSP   N ++ +  G  +        +IG + +  +
Sbjct: 240 TSEARMSAKIIACLPVVFLLILKFTSPENYNYVMFEEGGKPIFYYVLTSEIIGFICIWFI 299

Query: 183 IN 184
           + 
Sbjct: 300 LR 301


>gi|170701755|ref|ZP_02892691.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
 gi|170133338|gb|EDT01730.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
          Length = 327

 Score = 94.8 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 80/186 (43%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I +R    +   P+ LD IVR V  G  V  A    +  +  P+R     V     
Sbjct: 142 LVSRIHRRRQMIVRQLPSFLDGIVRLVTLGNSVPAAFQAALQTTEAPLRGCLDHVSRMLR 201

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  +      +E     +V+ +  + GG     L  +S  +RD +  + +++
Sbjct: 202 TGVEIDRAMMHIANVYHTKEFELVGSVLRLSVRYGGRADIMLDRMSTFMRDLEQAERELE 261

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SAW++  LP  + + V  T+P Y+  + ND  G  LL +A      G + + 
Sbjct: 262 AMSSETRLSAWVLVMLPIAIGSFVIATNPLYLQSMWNDYTGRQLLVLAFMLQAAGGIWLY 321

Query: 181 LMINFD 186
            M    
Sbjct: 322 HMAKLR 327


>gi|115351459|ref|YP_773298.1| type II secretion system protein [Burkholderia ambifaria AMMD]
 gi|115281447|gb|ABI86964.1| type II secretion system protein [Burkholderia ambifaria AMMD]
          Length = 322

 Score = 94.8 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 80/186 (43%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I +R    +   P+ LD IVR V  G  V  A    +  +  P+R     V     
Sbjct: 137 LVSRIHRRRQMIVRQLPSFLDGIVRLVTLGNSVPAAFQAALQTTEAPLRGCLDHVSRMLR 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  +      +E     +V+ +  + GG     L  +S  +RD +  + +++
Sbjct: 197 TGVEIDRAMMHIANVYHTKEFELVGSVLRLSVRYGGRADIMLDRMSTFMRDLEQAERELE 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SAW++  LP  + + V  T+P Y+  + ND  G  LL +A      G + + 
Sbjct: 257 AMSSETRLSAWVLVMLPIAIGSFVIATNPLYLQSMWNDYTGRQLLVLAFMLQAAGGIWLY 316

Query: 181 LMINFD 186
            M    
Sbjct: 317 HMAKLR 322


>gi|162147494|ref|YP_001601955.1| type II secretion system protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786071|emb|CAP55653.1| putative type II secretion system protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 319

 Score = 94.8 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 108/179 (60%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++  AK     P+AL +IVRS+R G+P+S A+ ++  ++  P   EFR + +   +G +L
Sbjct: 137 RRYAAKLFQQLPDALGMIVRSLRVGIPLSRALIIVGQEAEYPTADEFRMISQDVAVGKNL 196

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++  +     LQE  FF+T++++Q+Q GG L++ LA+ + ++R R   + +  AL+ E
Sbjct: 197 GDTLHNLAERTGLQEYRFFATIMALQAQTGGTLADVLASFADMIRQRIAARKRGHALASE 256

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           A+ S +++G +PF +  ++   +P YM V +    GHMLLGV+A  + +G   MR ++ 
Sbjct: 257 ARMSCYVLGGIPFAIGGIMSIINPDYMAVFLTTHMGHMLLGVSALMLGLGFGSMRFIMK 315


>gi|323486496|ref|ZP_08091819.1| hypothetical protein HMPREF9474_03570 [Clostridium symbiosum
           WAL-14163]
 gi|323400199|gb|EGA92574.1| hypothetical protein HMPREF9474_03570 [Clostridium symbiosum
           WAL-14163]
          Length = 257

 Score = 94.8 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 79/191 (41%), Gaps = 6/191 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRV 55
           K L  +R  +    F  A+ I+  S+ AG  V +A A  + +          +  EF  +
Sbjct: 66  KELALQRQEELRRQFKEAVLILSSSLGAGYSVENAFAGSLRELEELYGREGMITKEFSYI 125

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                +  ++   ++       L+E+  FS + +V  +  G L   + +   ++ DR  +
Sbjct: 126 AHQLRMNRTVETLLAEFADRSGLEEIKNFSDIFAVSKRSRGELVSVVNHTVHVISDRLQV 185

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + ++  ++ E +    I+  +P+C+   + F+SPG+   +     G +++          
Sbjct: 186 REEILTMTAEKQFEQKIMNLVPYCIVIYIEFSSPGFFRQMYGTAAGRVVMTGCLLIYCAS 245

Query: 176 IMVMRLMINFD 186
             +   +++ +
Sbjct: 246 CFLAFKILDIE 256


>gi|323694363|ref|ZP_08108536.1| hypothetical protein HMPREF9475_03400 [Clostridium symbiosum
           WAL-14673]
 gi|323501603|gb|EGB17492.1| hypothetical protein HMPREF9475_03400 [Clostridium symbiosum
           WAL-14673]
          Length = 257

 Score = 94.8 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 79/191 (41%), Gaps = 6/191 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRV 55
           K L  +R  +    F  A+ I+  S+ AG  V +A A  + +          +  EF  +
Sbjct: 66  KELALQRQEELRRQFKEAVLILSSSLGAGYSVENAFAGSLRELEELYGREGMITKEFSYI 125

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                +  ++   ++       L+E+  FS + +V  +  G L   + +   ++ DR  +
Sbjct: 126 AHQLRMNRTVETLLAEFADRSGLEEIKNFSDIFAVSKRSRGELVSVVNHTVHVISDRLQV 185

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + ++  ++ E +    I+  +P+C+   + F+SPG+   +     G +++          
Sbjct: 186 REEILTMTAEKQFEQKIMNLVPYCIVIYIEFSSPGFFRQMYGTAAGRVVMTGCLLIYCAS 245

Query: 176 IMVMRLMINFD 186
             +   +++ +
Sbjct: 246 CFLSFKILDIE 256


>gi|37676257|ref|NP_936653.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
 gi|37200798|dbj|BAC96623.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
          Length = 305

 Score = 94.8 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 90/182 (49%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L + + AKF +DFP+AL+I+  ++ +G  +  A   +  Q  + V  +F+ + E   +G
Sbjct: 120 KLQQAKAAKFKEDFPDALNILSGALSSGQSIVHAFEYVGNQLQNEVGKQFKLMAERLLMG 179

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
               + +SR     P  E  FF+  I +    GG L E ++ ++RI+ + + +  K  AL
Sbjct: 180 EDPDDVLSRSAASFPYVEYFFFAATIRINLSRGGQLKEVISRINRIMFEARAIDKKKNAL 239

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ SA II  LP     ++ FTSP   N ++ +  G  +        +IG + +  +
Sbjct: 240 TSEARMSAKIIACLPVVFLLILKFTSPENYNYVMFEEGGKPIFYYVLTSEIIGFVCIWFI 299

Query: 183 IN 184
           + 
Sbjct: 300 LR 301


>gi|326424176|ref|NP_762075.2| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
 gi|319999559|gb|AAO07065.2| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
          Length = 305

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 90/182 (49%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L + + AKF +DFP+AL+I+  ++ +G  +  A   +  Q  + V  +F+ + E   +G
Sbjct: 120 KLQQAKAAKFKEDFPDALNILSGALSSGQSIVHAFEYVGNQLQNEVGKQFKLMAERLLMG 179

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
               + +SR     P  E  FF+  I +    GG L E ++ ++RI+ + + +  K  AL
Sbjct: 180 EDPDDVLSRSAASFPYVEYFFFAATIRINLSRGGQLKEVISRINRIMFEARAIDKKKNAL 239

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ SA II  LP     ++ FTSP   N ++ +  G  +        +IG + +  +
Sbjct: 240 TSEARMSAKIIACLPVVFLLILKFTSPENYNYVMFEEGGKPIFYYVLTSEIIGFICIWFI 299

Query: 183 IN 184
           + 
Sbjct: 300 LR 301


>gi|134295598|ref|YP_001119333.1| type II secretion system protein [Burkholderia vietnamiensis G4]
 gi|134138755|gb|ABO54498.1| type II secretion system protein [Burkholderia vietnamiensis G4]
          Length = 324

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 84/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R  K +   P+ LD IVR V  G  V  A    +    +P+R     V     
Sbjct: 139 LASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTCEEPLRGCLDHVSRMLR 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  + +    +E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 199 SGVEIDRAMLHVAKVYRTKEFELLGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELT 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SA+++  LP  + + V  T+P Y+  + NDP G  LL +A    + G + + 
Sbjct: 259 AMSAETRLSAFVLVMLPIAIGSFVVMTNPRYLEGMWNDPSGRTLLMLAFLAQVAGSLWLY 318

Query: 181 LMINFD 186
            M    
Sbjct: 319 RMARLR 324


>gi|33601082|ref|NP_888642.1| hypothetical protein BB2099 [Bordetella bronchiseptica RB50]
 gi|33575517|emb|CAE32595.1| putative membrane protein [Bordetella bronchiseptica RB50]
          Length = 281

 Score = 94.4 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 88/171 (51%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
           P AL  +  ++RAG  ++ A+  +V     P+  EF  ++  Q +G+S   +++R+ R +
Sbjct: 111 PGALVAMACALRAGAGIAAALRQLVEHGEAPLAQEFGLLLREQRMGVSFDAALARLARRV 170

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
             + ++  +  + V +  GGNL+E L  +++ +  R  ++ +V+AL  + +  AWI+G+L
Sbjct: 171 SFESMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQAWIVGAL 230

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           P  +  ++    P  M  L +   G   L +       GI ++R ++  DV
Sbjct: 231 PPVLMGVLGRLQPEAMAALWHTLYGWAALALIVVLEGTGIWLIRRIVAIDV 281


>gi|15602713|ref|NP_245785.1| hypothetical protein PM0848 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721157|gb|AAK02932.1| TadB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 291

 Score = 94.4 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 76/178 (42%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +    F   FP  + I+  +   G  +  ++       +  +  EF+ + +   LG    
Sbjct: 111 RNQKMFNAMFPEVIQIMNAAATGGAGLLQSLERCGKDLTGQLGEEFKAIHKRLALGEDPM 170

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
                     P +E  FF T+I      GG + E +  L R++ D K M+ K +A++ EA
Sbjct: 171 SVFEDSYSRYPYKEFYFFITIIRTNLSKGGQIREVITRLGRVIADSKKMEQKKKAMTSEA 230

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + SA+I+ S P      + F  P   + L+NDP G  +L         G++++  ++ 
Sbjct: 231 RMSAFIVASFPIAFFLFMQFAMPENFDFLLNDPSGRYVLYYVFGSEAFGMLIIWWLMR 288


>gi|187923648|ref|YP_001895290.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
 gi|187714842|gb|ACD16066.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
          Length = 342

 Score = 94.4 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 85/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   + KR  + +   P  LD IVR +  G  V  A    +  +  P+R     V     
Sbjct: 156 LTMRVNKRRQQIVRQLPLFLDGIVRLITLGNSVPAAFQAALQTTEAPLRECLDYVSRMLR 215

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++S++ +   ++E+     V+ +  + GG     L  ++  +RD ++ + ++ 
Sbjct: 216 TGVEIDRALSQVAQIYGVRELELVGAVLRLSVKYGGRADVMLERMASFMRDLEHAERELV 275

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + S+W++  LP  +   +  ++P Y   +  DP G  L+ +A    ++G  ++ 
Sbjct: 276 AMSSETRLSSWVLAMLPIGIGGFLILSNPKYFASMWFDPTGRQLVYLAFVLQVLGAYLLY 335

Query: 181 LMINFD 186
            + N  
Sbjct: 336 RLANLR 341


>gi|153950598|ref|YP_001399591.1| type II secretion system protein F domain [Yersinia
           pseudotuberculosis IP 31758]
 gi|152962093|gb|ABS49554.1| type II secretion system protein F domain protein [Yersinia
           pseudotuberculosis IP 31758]
          Length = 291

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 76/183 (41%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+   K    F  DFP  L +I  +  +G  ++  +     +   P+  E   +    +
Sbjct: 105 LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 164

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +               E  F  T+I +  Q GG L E +  LS+I+  +K  + K  
Sbjct: 165 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 224

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++ + + S  II  +P   S L+Y   P  +  +   P G  ++       +IGI ++R
Sbjct: 225 VMTAQIRMSVNIISIMPILFSFLLYLLDPTTIEFVWQHPTGRFIIYYIIISEVIGIFIIR 284

Query: 181 LMI 183
            M+
Sbjct: 285 KML 287


>gi|262275465|ref|ZP_06053275.1| flp pilus assembly protein TadB [Grimontia hollisae CIP 101886]
 gi|262220710|gb|EEY72025.1| flp pilus assembly protein TadB [Grimontia hollisae CIP 101886]
          Length = 308

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 93/185 (50%), Gaps = 1/185 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++++  +    F  +FP+AL+++  SV AG  +  A+  +     + V  EF+R+ E  +
Sbjct: 121 IRYMDIRTQNAFERNFPDALNMVASSVTAGESLLHAIQYVGSHLDNIVGREFKRMGERLN 180

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S      +  +  P     FF   + V    GG L   +  L+R+L + ++++ K +
Sbjct: 181 IGESTDAVFRKACQRFPTPAFQFFVIAMRVNVNRGGQLRHVIGRLNRVLFNARSIEMKKR 240

Query: 121 ALSMEAKASAWIIGSLPFCVST-LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           A++ EA+ S++I+ ++PF     ++   SP   + ++NDP G  LL        IG+ ++
Sbjct: 241 AMTAEARMSSYIVCAIPFIFLFGVLRVLSPENYDFVMNDPGGRYLLYYMLTSEAIGMGIV 300

Query: 180 RLMIN 184
             ++ 
Sbjct: 301 FWLMR 305


>gi|257483344|ref|ZP_05637385.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|298488956|ref|ZP_07006979.1| Flp pilus assembly protein TadB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156454|gb|EFH97551.1| Flp pilus assembly protein TadB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320322733|gb|EFW78826.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330482|gb|EFW86461.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330887978|gb|EGH20639.1| type II secretion system, protein F domain [Pseudomonas syringae
           pv. mori str. 301020]
 gi|330989173|gb|EGH87276.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331012563|gb|EGH92619.1| type II secretion system protein, F domain [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 294

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 90/184 (48%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    + R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     
Sbjct: 109 VSWRYEVRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIERNVQ 168

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+SL ++           E   F+  + V  + GGN SE + NL +++RDR+    +++
Sbjct: 169 LGVSLPDAARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 228

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + +A ++  LP  ++      +P Y+  + ND  G ++L +A      G +V+ 
Sbjct: 229 AMTGETRMTALVLALLPVGMAGYFLTVNPSYLLHMWNDDSGKIMLSMAFVLQATGCVVLW 288

Query: 181 LMIN 184
            M+ 
Sbjct: 289 RMLR 292


>gi|303238718|ref|ZP_07325251.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
 gi|302593837|gb|EFL63552.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
          Length = 264

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 86/193 (44%), Gaps = 7/193 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-------SSDPVRSEFRR 54
           K +I+KR  +    F + L  +  S+ AG  +  +   ++         S+  +  E   
Sbjct: 72  KEIIEKRKNELNLQFRDMLYSLSSSLSAGKSIESSFKEVLKDLSIIYPDSNSFIIKEVEY 131

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           ++    +  ++  ++        L+++  F  V+    + GGN+ + + N S I+ D+  
Sbjct: 132 IVRKIEMNETIESALEDFAARSHLEDIENFVDVLQTSKRTGGNIVDIIKNSSNIISDKIE 191

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +K ++  L    K    I+  +P  +   +  ++  YM  + +D RG +++ ++ A ++I
Sbjct: 192 VKEEIDTLLASRKFEQKILALMPVMLILFLSLSTGDYMYPVFHDLRGRLVMTLSLALIII 251

Query: 175 GIMVMRLMINFDV 187
              + + ++N  V
Sbjct: 252 AYFISKKIMNIKV 264


>gi|315650391|ref|ZP_07903462.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315487318|gb|EFU77629.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 269

 Score = 94.0 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 89/192 (46%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55
           K LI ++  + L +F  A+ I+   + AG  + ++V   + +        + +  EF  +
Sbjct: 78  KELIVEKKRRLLIEFKEAVMILSSLLNAGYSLENSVKEALVELRLLYVKDNLIIKEFEYI 137

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
            +  ++ +S+  +   +      +++  F+ V+ +  + GG L   +A+   ++ D+  +
Sbjct: 138 CQLIYMNISVERAFDDLAYRSHCEDIRSFAKVLRIAKRSGGELESIIAHTVSVIGDKVRI 197

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K ++  ++   +    ++  LP  +   + F+SPG+ N++     G M + V     L  
Sbjct: 198 KEEIITMTAAKRFEQKVMNILPLLIVLYIDFSSPGFFNIMYTTIIGRMCMSVGLTVYLFA 257

Query: 176 IMVMRLMINFDV 187
           I + + ++N +V
Sbjct: 258 IYISKRLLNIEV 269


>gi|331014705|gb|EGH94761.1| hypothetical protein PLA106_02335 [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 295

 Score = 94.0 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 95/184 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     
Sbjct: 110 VSWRYERRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIELNVQ 169

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+SL +++          E   F+  + V  + GGN SE + NL +++RDR+    +++
Sbjct: 170 LGVSLPDAVRDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 229

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + +A ++G LP  ++      +P Y+  + +D  G ++L +A    ++G +++ 
Sbjct: 230 AMTGETRMTAIVLGLLPVSMAGYFLAVNPDYLLQMWSDDSGRIMLSMAFGLQILGCLMLW 289

Query: 181 LMIN 184
            M+ 
Sbjct: 290 RMLR 293


>gi|210614118|ref|ZP_03290054.1| hypothetical protein CLONEX_02267 [Clostridium nexile DSM 1787]
 gi|210150819|gb|EEA81827.1| hypothetical protein CLONEX_02267 [Clostridium nexile DSM 1787]
          Length = 220

 Score = 94.0 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 86/192 (44%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55
           K  I+KR   F   F  A+  +  ++  G  V +A+   +          + +  EFR +
Sbjct: 29  KQWIEKRKNVFQLQFKEAVQSLATALNVGYSVENAMREALKDLQIIYKKDELIVREFRYM 88

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           +    + +++ + +    +    ++V  F TV  +  + GG++   + N  + + ++ ++
Sbjct: 89  VRQLDVNVTMEKVLQEFSQRTGEEDVQTFVTVFVMAKRSGGDMIAIIRNTVQQMSEKADI 148

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + ++  +    K    ++ ++PF +   + F+ P +M VL  +  G +++ +     +I 
Sbjct: 149 RREIGTIIASKKLEFKVMSAIPFGMICYMKFSFPEFMGVLYGNAAGVVIMTICFLGYVIA 208

Query: 176 IMVMRLMINFDV 187
             + + ++  +V
Sbjct: 209 YEIGKRIVEIEV 220


>gi|330969403|gb|EGH69469.1| type II secretion system protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 294

 Score = 94.0 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 92/184 (50%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    + R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     
Sbjct: 109 VSWRYEVRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQ 168

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+SL ++           E   F+  + V  + GGN SE + NL +++RDR+    +++
Sbjct: 169 LGVSLPDAARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 228

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + +A ++  LP  ++      +P Y+  + +D  G ++L VA A  + G +V+ 
Sbjct: 229 AMTGETRMTAVVLALLPISMAGYFLAVNPSYLLHMWDDESGKIMLSVAFALQVTGCVVLW 288

Query: 181 LMIN 184
            M+ 
Sbjct: 289 RMLR 292


>gi|283777929|ref|YP_003368684.1| type II secretion system protein [Pirellula staleyi DSM 6068]
 gi|283436382|gb|ADB14824.1| type II secretion system protein [Pirellula staleyi DSM 6068]
          Length = 318

 Score = 94.0 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 92/175 (52%), Gaps = 3/175 (1%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
                P+A D++ R++RAG  V  A  VI    + P++ EF    E QHLG+    ++  
Sbjct: 146 LARQLPDAFDVMSRALRAGQTVPAAFQVIATDFNSPLKEEFAHCYEQQHLGIERDVALRD 205

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           + R   + E+  F   + +  + GGNL+E L NL+ +LR R  +  +++AL+ E +  A 
Sbjct: 206 LARRTSVMELQIFVVALIMHGKTGGNLAELLGNLALLLRKRGKLHDRIRALTGEGRMQAV 265

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           ++ +LP  +  ++Y  +  Y  VL++ P   MLL       LIG + +R +I+ +
Sbjct: 266 VLIALPAVIFGVMYVMNREYAQVLLDRP---MLLIGCGISQLIGALCIRKIIDIE 317


>gi|302185192|ref|ZP_07261865.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           642]
          Length = 294

 Score = 94.0 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 92/184 (50%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    + R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     
Sbjct: 109 VSWRYEVRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQ 168

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+SL ++           E   F+  + V  + GGN SE + NL +++RDR+    +++
Sbjct: 169 LGVSLPDAARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 228

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + +A ++  LP  ++      +P Y+  + +D  G ++L VA A  + G +V+ 
Sbjct: 229 AMTGETRMTAVVLALLPISMAGYFLAVNPSYLLHMWDDESGKIMLSVAFALQVTGCVVLW 288

Query: 181 LMIN 184
            M+ 
Sbjct: 289 RMLR 292


>gi|167816006|ref|ZP_02447686.1| type II secretion system protein [Burkholderia pseudomallei 91]
          Length = 206

 Score = 94.0 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 84/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V     
Sbjct: 21  LVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 80

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 81  SGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 140

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   + 
Sbjct: 141 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLY 200

Query: 181 LMINFD 186
            +    
Sbjct: 201 RLARLR 206


>gi|325518468|gb|EGC98167.1| type II secretion system protein [Burkholderia sp. TJI49]
          Length = 257

 Score = 94.0 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 84/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R  K +   P+ LD IVR V  G  V  A    +  + +P+R     V     
Sbjct: 72  LASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTTEEPLRGCLDHVSRMLR 131

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  + +    +E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 132 TGVEIDRAMLHIAKIYRTEEFELLGSVLRLSVKYGGRADVMLERMAIFMRDLEQAERELT 191

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SA+++  LP  + + V  T+P Y+  + ND  G +LL  A    L G + + 
Sbjct: 192 AMSAETRLSAFVLVMLPIAIGSFVVMTNPTYLQGMWNDSLGRLLLMFAFLMQLAGSVWLY 251

Query: 181 LMINFD 186
            M    
Sbjct: 252 RMARLR 257


>gi|71733377|ref|YP_276553.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71553930|gb|AAZ33141.1| type II secretion system protein F domain protein [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 294

 Score = 94.0 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 90/184 (48%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    + R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     
Sbjct: 109 VSWRYEVRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLQGIEATDQPLKDGMSRIERNVQ 168

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+SL ++           E   F+  + V  + GGN SE + NL +++RDR+    +++
Sbjct: 169 LGVSLPDAARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 228

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + +A ++  LP  ++      +P Y+  + ND  G ++L +A      G +V+ 
Sbjct: 229 AMTGETRMTALVLALLPVGMAGYFLTVNPSYLLHMWNDDSGKIMLSMAFVLQATGCVVLW 288

Query: 181 LMIN 184
            M+ 
Sbjct: 289 RMLR 292


>gi|330895622|gb|EGH27929.1| type II secretion system protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 293

 Score = 94.0 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 90/184 (48%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    + R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     
Sbjct: 108 VSWRYEVRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQ 167

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+SL ++           E   F+  + V  + GGN SE + NL +++RDR+    +++
Sbjct: 168 LGVSLPDAARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 227

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + +A ++  LP  ++      +P Y+  + +D  G ++L  A A    G +V+ 
Sbjct: 228 AMTGETRMTAVVLALLPISMAGYFLAVNPNYLLHMWDDESGKIMLSAAFALQATGCVVLW 287

Query: 181 LMIN 184
            M+ 
Sbjct: 288 RMLR 291


>gi|331086802|ref|ZP_08335879.1| hypothetical protein HMPREF0987_02182 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409968|gb|EGG89403.1| hypothetical protein HMPREF0987_02182 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 251

 Score = 94.0 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 76/192 (39%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55
           K  IKK+  +F   F  +L  +  ++  G    +A+                +  E+  +
Sbjct: 60  KQYIKKQQQEFCAQFKMSLQSMSSALNVGYSAENALKETAKDLSLIYKKDTRIMREYTYM 119

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           I   ++ + L +        +  ++VS F +V     + GG+  E + N  + + ++  +
Sbjct: 120 IHQLNMNVPLEQIWKEFADRVGQEDVSNFVSVFVAAKRAGGDSIEMIRNAVKQICEKIEV 179

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K +++      K    ++  +PF +   +    P ++ VL  +  G  ++ V  A     
Sbjct: 180 KREIEMTMSAKKLEFQVMSVVPFGIIFYMRIAFPDFVEVLYRNFLGIFVMTVCLAVYAGA 239

Query: 176 IMVMRLMINFDV 187
             + + MI  +V
Sbjct: 240 FYMGKRMIEIEV 251


>gi|167719784|ref|ZP_02403020.1| type II secretion system protein [Burkholderia pseudomallei DM98]
          Length = 220

 Score = 94.0 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 84/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V     
Sbjct: 35  LVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 94

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 95  SGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 154

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   + 
Sbjct: 155 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLY 214

Query: 181 LMINFD 186
            +    
Sbjct: 215 RLARLR 220


>gi|283778865|ref|YP_003369620.1| type II secretion system protein [Pirellula staleyi DSM 6068]
 gi|283437318|gb|ADB15760.1| type II secretion system protein [Pirellula staleyi DSM 6068]
          Length = 300

 Score = 94.0 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 84/178 (47%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R        P AL  +  +VR+G  +S+A  ++  +   P+  EF    +   LG +   
Sbjct: 121 RVGTMQKQMPQALQAVADAVRSGQTLSEACQLVSKEIKGPLGQEFAYAHQQLELGHAPVS 180

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
            ++RM   +PL E   F+T + V  + GGNLS     +S   RDR++++  + A++  ++
Sbjct: 181 VMNRMATRVPLTEFRVFATAVVVHRRAGGNLSLLTERMSHSARDRQDVRNHLMAVTSGSR 240

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            SA+ +          + +  P Y+   + +P+G  LL +A    ++G + +  ++  
Sbjct: 241 LSAFGMVLGGIIAVAFLTWLEPDYVRAFLENPKGPWLLFIAFMLQVVGAIWVWRILKV 298


>gi|325963897|ref|YP_004241803.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469984|gb|ADX73669.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 285

 Score = 94.0 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 78/183 (42%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   KKR+A     +P+ +D +  ++RAGLP+ +A+  +  +  + +R  FR       
Sbjct: 94  LRWRAKKRSALLRQLWPDVVDHLRSAIRAGLPLPEALIQLGDKGPEELRHVFRDFGADYR 153

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKV 119
            G     S++++   +           + +  +  G +L + L  L+  LR+    ++++
Sbjct: 154 AGGQFDASLNKLKHRLADPVADRIVEALRLTREVGGSDLGKLLGTLAEFLRESARTRSEL 213

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +A       +A +  + P+ V  L+  T P  +    N   G  +L       L+   +M
Sbjct: 214 EARQSWTINAARLAVAAPWIVMILL-ATRPEAVQA-YNTAAGAAVLVGGLVVSLVCYSIM 271

Query: 180 RLM 182
             +
Sbjct: 272 LRI 274


>gi|22127362|ref|NP_670785.1| hypothetical protein y3488 [Yersinia pestis KIM 10]
 gi|21960447|gb|AAM87036.1|AE013952_3 hypothetical [Yersinia pestis KIM 10]
          Length = 270

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 77/183 (42%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+   K    F  DFP  L +I  +  +G  ++  +     +   P+  E   +    +
Sbjct: 84  LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 143

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +               E  F  T+I +  Q GG L E +  LS+I+  +K  + K  
Sbjct: 144 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 203

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++ + + S  II  +P   S L+Y   P  +  +   P G  ++       +IGI+++R
Sbjct: 204 VMTAQIRMSVNIISIMPMLFSFLLYLLDPTTIEFVWQHPTGRFIIYYIIISEVIGILIIR 263

Query: 181 LMI 183
            M+
Sbjct: 264 KML 266


>gi|217423568|ref|ZP_03455069.1| type II secretion system protein [Burkholderia pseudomallei 576]
 gi|217393426|gb|EEC33447.1| type II secretion system protein [Burkholderia pseudomallei 576]
          Length = 237

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 84/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V     
Sbjct: 52  LVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 111

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 112 SGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 171

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   + 
Sbjct: 172 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLY 231

Query: 181 LMINFD 186
            +    
Sbjct: 232 RLARLR 237


>gi|167738782|ref|ZP_02411556.1| type II secretion system protein [Burkholderia pseudomallei 14]
 gi|167824381|ref|ZP_02455852.1| type II secretion system protein [Burkholderia pseudomallei 9]
 gi|167911132|ref|ZP_02498223.1| type II secretion system protein [Burkholderia pseudomallei 112]
          Length = 211

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 84/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V     
Sbjct: 26  LVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 85

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 86  SGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 145

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   + 
Sbjct: 146 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLY 205

Query: 181 LMINFD 186
            +    
Sbjct: 206 RLARLR 211


>gi|149909166|ref|ZP_01897823.1| TadB-like protein involved in pilus formation and/or
           proteinsecretion [Moritella sp. PE36]
 gi|149807690|gb|EDM67636.1| TadB-like protein involved in pilus formation and/or
           proteinsecretion [Moritella sp. PE36]
          Length = 311

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 93/183 (50%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           +  ++  +F   F   L  + R+V AG+ V  A+A I       +  EF  + +   +G+
Sbjct: 128 MRTRQHREFDAAFTQVLGQMSRAVSAGISVPQAIAQIADYQQGMLGREFSLIRDKLEIGI 187

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L +++++    +P     FFS  + +  + GG L E L +LSR + D   +K K+++L+
Sbjct: 188 GLKQALNQASIRLPYVSFHFFSVALILNEENGGQLREVLHSLSRTVHDNAAIKMKIRSLT 247

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + +A I+ SLP  +  ++YF +P     L   PRGH++LG     M +G+ ++ L+ 
Sbjct: 248 AEPRMTAAILASLPILLIGVMYFKNPSAFITLTQSPRGHLVLGYVVTSMALGMAIIHLLT 307

Query: 184 NFD 186
              
Sbjct: 308 KVR 310


>gi|167836790|ref|ZP_02463673.1| hypothetical protein Bpse38_09905 [Burkholderia thailandensis
           MSMB43]
          Length = 221

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 84/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V     
Sbjct: 36  LVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 95

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 96  SGVEIDRAMVYVATLYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 155

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   + 
Sbjct: 156 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPMGRQLVYLAFILQVAGGYWLY 215

Query: 181 LMINFD 186
            +    
Sbjct: 216 RLARLR 221


>gi|167894488|ref|ZP_02481890.1| type II secretion system protein [Burkholderia pseudomallei 7894]
          Length = 215

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 84/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V     
Sbjct: 30  LVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 89

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 90  SGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 149

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   + 
Sbjct: 150 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLY 209

Query: 181 LMINFD 186
            +    
Sbjct: 210 RLARLR 215


>gi|166033070|ref|ZP_02235899.1| hypothetical protein DORFOR_02792 [Dorea formicigenerans ATCC
           27755]
 gi|166027427|gb|EDR46184.1| hypothetical protein DORFOR_02792 [Dorea formicigenerans ATCC
           27755]
          Length = 230

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 76/193 (39%), Gaps = 6/193 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRR 54
           +   IK++  +FL  F   +      +  G  V +AV   + +          +  E   
Sbjct: 38  LDECIKRKEQEFLVQFKELIQTFSSLLNTGYSVENAVKESLKEMQIFYSDDAAILRELEI 97

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           ++    + + + +++  +     L +V  F+ V     + GGNL   + N +  + D+ +
Sbjct: 98  MVRQIRVQVPVEQAVEELSERTKLPDVESFAGVFVTAKRSGGNLMSIIRNTADQIGDKID 157

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +K ++  +    K    ++  +PF +   +  + P +M  L  +  G  ++       L 
Sbjct: 158 VKREIDTMLAAKKYEFQVMSVIPFGIVLYMTVSFPEFMGNLYGNIAGRGVMTGCLIIYLG 217

Query: 175 GIMVMRLMINFDV 187
              + R +I  +V
Sbjct: 218 AYGLGRKIIEIEV 230


>gi|325663220|ref|ZP_08151670.1| hypothetical protein HMPREF0490_02411 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470674|gb|EGC73904.1| hypothetical protein HMPREF0490_02411 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 251

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 76/192 (39%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55
           K  IKK+  +F   F  +L  +  ++  G    +A+                +  E+  +
Sbjct: 60  KQYIKKQQQEFCAQFKMSLQSMSSALNVGYSAENALKETAKDLSLIYKKDTRIMREYTYM 119

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           I   ++ + L +        +  ++VS F +V     + GG+  E + N  + + ++  +
Sbjct: 120 IHQLNMNVPLEQIWKEFADRVGQEDVSNFVSVFVAAKRAGGDSIEMIRNAVKQICEKIEV 179

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K +++      K    ++  +PF +   +    P ++ VL  +  G  ++ V  A     
Sbjct: 180 KREIEMTMSAKKLEFQVMSVVPFGIIFYMRIAFPDFVEVLYRNFLGIFVMTVCLAVYAGA 239

Query: 176 IMVMRLMINFDV 187
             + + MI  +V
Sbjct: 240 FYMGKKMIEIEV 251


>gi|289625309|ref|ZP_06458263.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647834|ref|ZP_06479177.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330867143|gb|EGH01852.1| type II secretion system, protein F domain [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330871031|gb|EGH05740.1| type II secretion system, protein F domain [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 294

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 90/184 (48%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    + R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     
Sbjct: 109 VSWRYEVRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIERNVQ 168

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+SL ++           E   F+  + V  + GGN SE + NL +++RDR+    +++
Sbjct: 169 LGVSLPDAARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 228

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + +A ++  LP  ++      +P Y+  + ND  G ++L +A      G +V+ 
Sbjct: 229 AMTGETRMTALVLALLPVGMAGYFLTVNPSYLLHMWNDDSGKIMLSMAFVLQATGCVVLW 288

Query: 181 LMIN 184
            M+ 
Sbjct: 289 RMLR 292


>gi|168699470|ref|ZP_02731747.1| hypothetical protein GobsU_08112 [Gemmata obscuriglobus UQM 2246]
          Length = 330

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 86/177 (48%), Gaps = 3/177 (1%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
            K+L     A +++ R +R G  V++A    VG   DP+  EF R +     G+    + 
Sbjct: 156 EKYLRQIAGAFELMARVIRTGQSVTEAFRAAVGAFDDPLAEEFGRCVHQIEHGIRPEAAF 215

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
             M     + E+  F   +++Q Q GGNLSE L  L+ ++R R  ++ K++AL+ E +  
Sbjct: 216 REMSDRADVLELRIFVVAMTIQRQTGGNLSEVLDRLAGVVRARLRVRQKIRALTAEGRMQ 275

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           +  +  LP  V  ++YF +  Y   L+       LL      + +G + +R ++NF+
Sbjct: 276 SRTLTVLPVVVFAMMYFLNRPYAEGLLAQ---WRLLLGTVTCVAVGTLWIRNIMNFE 329


>gi|167845913|ref|ZP_02471421.1| type II secretion system protein [Burkholderia pseudomallei B7210]
          Length = 216

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 84/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V     
Sbjct: 31  LVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 90

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 91  SGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 150

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   + 
Sbjct: 151 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLY 210

Query: 181 LMINFD 186
            +    
Sbjct: 211 RLARLR 216


>gi|123443824|ref|YP_001007795.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090785|emb|CAL13667.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 280

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 1/182 (0%)

Query: 3   HLIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
            L +KR  +F    FP +L +I  +  +G  ++  +     + S P+  EF  V    ++
Sbjct: 95  RLSRKRYHRFFKQNFPESLLMINMAASSGASINQILERCGQEISGPLGIEFNLVCRRLNV 154

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S         +     E  F  T+I +  Q GG L E  + LS ++   K  + K   
Sbjct: 155 GESPESVFYDSYQRFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAV 214

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ + + S  II  +P   S L+YF  P  +  + + P G ++        LIG++V+R 
Sbjct: 215 MTAQIRMSVNIISIMPIAFSLLLYFLDPITIESMWHHPIGKIVYYYIITSELIGMIVIRK 274

Query: 182 MI 183
           M+
Sbjct: 275 ML 276


>gi|225570081|ref|ZP_03779106.1| hypothetical protein CLOHYLEM_06177 [Clostridium hylemonae DSM
           15053]
 gi|225161551|gb|EEG74170.1| hypothetical protein CLOHYLEM_06177 [Clostridium hylemonae DSM
           15053]
          Length = 251

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 83/192 (43%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55
           K  ++++++ F   F +A+  +  ++  G  V +A      +       +D +R E   +
Sbjct: 60  KECLRRKSSSFQLQFKDAIQSLSSALSTGYSVENAWKEAEKELKLLYRENDRIRKELHII 119

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           +    + + + + +      +  ++V  F+ V +   + GG++   + N +  + D+  +
Sbjct: 120 VSQIRVNVPMEQIMEEFAERVRQEDVRNFTAVFAAAKKSGGDMVAIIRNTAGQIGDKVEV 179

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K ++  +    +    ++ ++P+ +   +  + P +M  L  +  G  ++ V  A  +  
Sbjct: 180 KREIDTILASREYEFKVMSAVPYVIIGYMSLSFPEFMQNLYGNVLGTGVMTVCLAAYIGA 239

Query: 176 IMVMRLMINFDV 187
             + + +I  +V
Sbjct: 240 CCLGQKIIRIEV 251


>gi|257064724|ref|YP_003144396.1| Flp pilus assembly protein TadB [Slackia heliotrinireducens DSM
           20476]
 gi|256792377|gb|ACV23047.1| Flp pilus assembly protein TadB [Slackia heliotrinireducens DSM
           20476]
          Length = 332

 Score = 93.3 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 84/185 (45%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
            H   +   +  +  P+AL  +    +AGL +    A    ++  P+   F +V     L
Sbjct: 146 SHAADEEQNRLRELVPDALRCMESCFQAGLSLPQTFAETARETEPPLSQTFAQVSHDIEL 205

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S+ E++ R      L E++F +  + VQ   GG+ +  L      +     ++  ++ 
Sbjct: 206 GHSVDEALDRFRLGSGLPELAFVAVALDVQYVSGGDATSVLRIAQDSVDHALELRRTLRV 265

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            + +AK SA I+ ++P  +  ++   SP + N       G  LL +AA+ +  GI+++R 
Sbjct: 266 QTAQAKLSAQIVSAMPLVLVGVLSLVSPHFFNPFFETGTGLALLAMAASMLAGGILIVRR 325

Query: 182 MINFD 186
           M+  D
Sbjct: 326 MLAVD 330


>gi|78066134|ref|YP_368903.1| Flp pilus assembly protein TadB [Burkholderia sp. 383]
 gi|77966879|gb|ABB08259.1| Flp pilus assembly protein TadB [Burkholderia sp. 383]
          Length = 326

 Score = 93.3 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 81/186 (43%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I +R  K +   P+ LD IVR V  G  V  A    +  +  P+R     V     
Sbjct: 141 ITSRISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQSTLQTAEMPLRRCLDDVSRMLR 200

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  +     ++E      V+ +  + GG     L  +S  +RD ++ + ++ 
Sbjct: 201 SGVEIDRAMLHVAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEHAERELS 260

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SAW++  +P  V + V  TSP Y   + ND  G  L+ +A A   +G   + 
Sbjct: 261 AMSAETRMSAWVLALMPIAVGSFVIATSPHYFTAMWNDDSGRQLVYLAFALQTMGGFWLY 320

Query: 181 LMINFD 186
            +    
Sbjct: 321 RLARLR 326


>gi|28871969|ref|NP_794588.1| hypothetical protein PSPTO_4854 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213968013|ref|ZP_03396159.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|301383671|ref|ZP_07232089.1| hypothetical protein PsyrptM_13603 [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059960|ref|ZP_07251501.1| hypothetical protein PsyrptK_08210 [Pseudomonas syringae pv. tomato
           K40]
 gi|302131626|ref|ZP_07257616.1| hypothetical protein PsyrptN_09547 [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28855222|gb|AAO58283.1| conserved protein of unknown function [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213927356|gb|EEB60905.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
          Length = 295

 Score = 93.3 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 95/184 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     
Sbjct: 110 VSWRYERRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIELNVQ 169

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+SL +++          E   F+  + V  + GGN SE + NL +++RDR+    +++
Sbjct: 170 LGVSLPDAVRDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 229

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + +A ++G LP  ++      +P Y+  + +D  G ++L +A    ++G +++ 
Sbjct: 230 AMTGETRMTAIVLGLLPVSMAGYFLAVNPDYLLQMWSDDSGRIMLSMAFGLQMLGCLMLW 289

Query: 181 LMIN 184
            M+ 
Sbjct: 290 RMLR 293


>gi|330976794|gb|EGH76830.1| type II secretion system protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 294

 Score = 93.3 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 89/184 (48%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    + R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     
Sbjct: 109 VSWRYEVRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQ 168

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+SL ++           E   F+  + V  + GGN SE + NL +++RDR+    +++
Sbjct: 169 LGVSLPDAARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 228

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + +A ++  LP   +      +P Y+  + +D  G ++L  A A    G +V+ 
Sbjct: 229 AMTGETRMTAVVLALLPISTAGYFLAVNPNYLLHMWDDESGKIMLSAAFALQATGCVVLW 288

Query: 181 LMIN 184
            M+ 
Sbjct: 289 RMLR 292


>gi|291546643|emb|CBL19751.1| Flp pilus assembly protein TadB [Ruminococcus sp. SR1/5]
          Length = 260

 Score = 93.3 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 87/192 (45%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG------QSSDPVRSEFRRV 55
           K    ++  +    F +AL  +  +V+AG    +AV   V       +    +  EFR +
Sbjct: 69  KKCTARQQRELNYQFRDALTAMNVAVQAGYSAENAVRASVKDLGRLYEKGSDILDEFRYI 128

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                L + + E    + +   ++++  F+ V     + GG++++ +  ++R+L D+  +
Sbjct: 129 ESQLRLSVPVEELFLDLGKRSGVEDIENFAAVFYTAKRTGGDMTQVIQKVARMLSDKIEV 188

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K +++A     K+   ++  +P  +   +  TSPG+++VL  +P G   + V      + 
Sbjct: 189 KKEIEATLAAKKSEQMVMSIMPAGIICYLKLTSPGFLDVLYGNPFGICAMTVCMVIYGLS 248

Query: 176 IMVMRLMINFDV 187
             +   +++ +V
Sbjct: 249 YWLGVKIVDIEV 260


>gi|238782878|ref|ZP_04626907.1| Type II secretion system protein F domain protein [Yersinia
           bercovieri ATCC 43970]
 gi|238716301|gb|EEQ08284.1| Type II secretion system protein F domain protein [Yersinia
           bercovieri ATCC 43970]
          Length = 181

 Score = 93.3 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 73/173 (42%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           F  DFP  + +I  +  +G  ++  +     + + P+  E   +    +LG S       
Sbjct: 6   FHQDFPEVILMITMAASSGASINQILERCGYEINGPLGDELTLICRKLNLGESPETVFYD 65

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +     E  F  T+I +  Q GG L E    LS ++   K  + K   ++ + + S  
Sbjct: 66  AYQRFHYPEFYFLITIILLNLQQGGQLRELTNRLSSVIAKNKTSEQKKAVMTAQTRMSVN 125

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           II  +P   S L+YF  P  +  + N   G ++     A  LIG+ ++R M+ 
Sbjct: 126 IISLMPLAFSLLLYFIDPTTIESMWNHSIGKLIFYYIIASELIGLALIRKMLR 178


>gi|110626526|gb|ABG79010.1| TadB [Yersinia ruckeri]
          Length = 296

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 79/178 (44%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K++   F + FP  L I+  +  +G  ++  +     +    + +EF  +    +LG + 
Sbjct: 115 KQKNKHFNESFPEVLTIMNMAASSGANLNQILERCGKEIQGELGNEFNLIYRRLNLGEAP 174

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
               +   R     E  FF++VI +  + GG LS+ +  + + + +   +K +   ++ +
Sbjct: 175 EIVFNDAYRKFNYAEFHFFTSVILLNIKQGGQLSDLIKKMHKGITESNKLKQRKAIMTAQ 234

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            + +  ++  +P   +  +Y+  P  +  L +   G  ++       ++GI ++R MI
Sbjct: 235 IRMTTNVVSLIPIVFTAFLYYIDPNSIETLWSQDVGKEIISYIVISEILGIFIIRNMI 292


>gi|297568750|ref|YP_003690094.1| Type II secretion system F domain protein [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924665|gb|ADH85475.1| Type II secretion system F domain protein [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 305

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 88/185 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +  ++R    +   P  +D ++R+V AG  +  A+      S  P+     +V     
Sbjct: 120 LYYRSQRRRRLMVAQIPTFIDQLLRAVAAGHTLDAALLTATADSRLPLGEVLEQVTREIK 179

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  +  ++S  +R   L+E+   +  I V  + G ++ E L +L  +++  +  + + +
Sbjct: 180 LGGEIDTALSEAIRLYDLEELRLLALAIRVNRRYGSSIQELLRSLVTLIQQEETSRQEFR 239

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ E++ +AW++G +P  +   +  T+P Y   L +DP G  +L +A      G++ + 
Sbjct: 240 ALTGESRLTAWVLGLMPLLLVGFLLLTNPEYPAHLWHDPAGRTILLIALLLQSGGVLALW 299

Query: 181 LMINF 185
            +   
Sbjct: 300 RLTRV 304


>gi|288919649|ref|ZP_06413977.1| type II secretion system protein [Frankia sp. EUN1f]
 gi|288348938|gb|EFC83187.1| type II secretion system protein [Frankia sp. EUN1f]
          Length = 286

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 72/184 (39%), Gaps = 3/184 (1%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
              + R     + +P+ +D +  +VRAGL + +A+A +  +    +R  F R  E     
Sbjct: 96  RRRRGRMHDLREVWPDVVDNLASAVRAGLSLPEALAAVGVRGPVALRPAFTRFGEDYRAT 155

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQA 121
            S S  + R+   +           + +  +  G +L   L  LS  LR+    +A+++ 
Sbjct: 156 GSFSTCLDRLADELADPVADRIIESLRMAREVGGTDLGRLLRTLSTFLREDARTRAELET 215

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
                  +A +  + P+ V  L+            + P G  +L   A   ++  ++M+ 
Sbjct: 216 RQTWTVNAARLAMAAPWIVLLLLASRGENVRA--YDSPTGVAVLAGGAGVSVLAYLIMKR 273

Query: 182 MINF 185
           +   
Sbjct: 274 IGRL 277


>gi|66047621|ref|YP_237462.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           B728a]
 gi|63258328|gb|AAY39424.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           B728a]
          Length = 294

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 92/184 (50%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    + R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     
Sbjct: 109 VSWRYEVRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQ 168

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+SL ++           E   F+  + V  + GGN SE + NL +++RDR+    +++
Sbjct: 169 LGVSLPDAARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 228

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + +A ++  LP  ++      +P Y+  + +D  G ++L VA A  + G +V+ 
Sbjct: 229 AMTGETRMTAVVLALLPISMAGYFLAVNPSYLLHMWDDESGKIMLSVAFALQVTGCVVLW 288

Query: 181 LMIN 184
            M+ 
Sbjct: 289 RMLR 292


>gi|158317569|ref|YP_001510077.1| type II secretion system protein [Frankia sp. EAN1pec]
 gi|158112974|gb|ABW15171.1| type II secretion system protein [Frankia sp. EAN1pec]
          Length = 286

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 73/184 (39%), Gaps = 3/184 (1%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
              + R     + +P+ +D +  +VRAG+ + + +A +  +   P+R  F R  E     
Sbjct: 96  RRRRARIHDLRELWPDVVDNLASAVRAGMSLPEGLAAVGVRGPAPLRPAFTRFGEDYRAT 155

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQA 121
            S S  + R+   +           + +  +  G +L   L  LS  LR+    +A+++ 
Sbjct: 156 GSFSTCLDRLADDLADPVADRIIESLRMAREVGGTDLGRLLRTLSAFLREDARTRAELET 215

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
                  +A +  + P+ V  L+            + P G ++L   A   ++  ++M+ 
Sbjct: 216 RQAWTVNAARLAMAAPWIVLLLLASRGENIQA--YDSPTGVLVLLGGAGVSVLAYVLMKR 273

Query: 182 MINF 185
           +   
Sbjct: 274 IGRL 277


>gi|332162958|ref|YP_004299535.1| type II secretion system protein F domain protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325667188|gb|ADZ43832.1| Type II secretion system protein F domain protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 223

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 82/183 (44%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   K+    F  +FP +L +I  +  +G  ++  +     + S P+  EF  V    +
Sbjct: 37  LRLSRKRYYRFFKQNFPESLLMINMAASSGASINQILERCGQEISGPLGVEFNLVCRRLN 96

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S         +     E  F  T+I +  Q GG L E  + LS ++   K  + K  
Sbjct: 97  VGESPESVFYDSYQRFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKA 156

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++ + + S  II  +P   S L+YF  P  +  + + P G ++    +   +IG++V+R
Sbjct: 157 VMTAQIRMSVNIISIMPIAFSLLLYFLDPTTIESMWHHPIGKIVYYYISISEIIGMIVIR 216

Query: 181 LMI 183
            M+
Sbjct: 217 KML 219


>gi|260587080|ref|ZP_05852993.1| putative bacterial type II secretion system protein F domain
           protein [Blautia hansenii DSM 20583]
 gi|260542570|gb|EEX23139.1| putative bacterial type II secretion system protein F domain
           protein [Blautia hansenii DSM 20583]
          Length = 248

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 73/192 (38%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRV 55
           K  I+ R  +    F +AL+ +   + AG  + + +                +  EF  +
Sbjct: 57  KQQIRLRKKRLNYQFKDALNAMQVGISAGYSLDNTIREARKDLERLYGEKAEMAREFAYI 116

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                  + L E +  +     ++++  F+ V+    ++GGN+   L      + +R  +
Sbjct: 117 ERQLGHSIPLEELLYDLGIRSRVEDILNFTDVLIQAKKMGGNMRGILNRCISSIEERIQV 176

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K ++ A+    K    I+  +P  +   +  TSP +++VL  +P G  ++          
Sbjct: 177 KKEIDAVLASRKMEQKIMSFIPLGIILYMQITSPEFLSVLYGNPVGICVMTACLLLYTAA 236

Query: 176 IMVMRLMINFDV 187
                 +   DV
Sbjct: 237 FQWGVRLTQIDV 248


>gi|266621096|ref|ZP_06114031.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
 gi|288867252|gb|EFC99550.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
          Length = 245

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 79/190 (41%), Gaps = 6/190 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ------SSDPVRSEFRRVIE 57
           L  +R  +   +F   + I+   + AG  V +A +  + +      +S  +  EF  +  
Sbjct: 56  LKDQRLKRLNLEFKEGILILSSFLSAGYSVENAFSASIRELAVMYGASGMMVLEFSHMEG 115

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +   + + +        L +V  F+ V +   + GG L   + + S ++RD+  ++ 
Sbjct: 116 QIRMNRPVEQVLMEFGDRSGLDDVRNFAEVFAAAKRSGGELVSIINHTSGVIRDKIQIQE 175

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           ++  ++   +    I+  +PF +   V  +SPG+ +++     G  ++    A      +
Sbjct: 176 EIATMTAAKQFEQKIMNLIPFFLVLYVDVSSPGFFDMMYQTGAGRWIMTGCLAIYAAAYV 235

Query: 178 VMRLMINFDV 187
           +   ++  +V
Sbjct: 236 LAGRILRIEV 245


>gi|171321819|ref|ZP_02910722.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
 gi|171092890|gb|EDT38140.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
          Length = 224

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 87/186 (46%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R  + +   P+ LD IVR V  G  V  A    +  + +P+RS    V     
Sbjct: 39  LASRIQRRRLRIVRQIPSFLDGIVRLVTLGNSVPAAFQSALLTTEEPLRSCLDHVSRMLR 98

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  + +    +E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 99  GGVEIDRAMMHIAKIYRTEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELT 158

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SA+++  LP  + + V  T+P Y++ + NDP G  LL VA    L G + + 
Sbjct: 159 AMSSETRLSAFVLVMLPIGIGSFVVMTNPKYLHGMWNDPSGRTLLMVAFLLQLGGSVWLY 218

Query: 181 LMINFD 186
            M    
Sbjct: 219 RMARLR 224


>gi|33600814|ref|NP_888374.1| hypothetical protein BB1829 [Bordetella bronchiseptica RB50]
 gi|33568414|emb|CAE32326.1| putative membrane protein [Bordetella bronchiseptica RB50]
          Length = 308

 Score = 92.5 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 79/184 (42%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     +R  + +   P  LD +VR +  G  V+ A    +G    P+    +R      
Sbjct: 123 LWLKADRRRRRMVHQLPTFLDALVRLITIGNSVNAAFQNALGSVEQPLLEVLQRADSQVR 182

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L  ++ ++ R   L+E+   S VI++  + GG   + L  ++  +RD +  + ++ 
Sbjct: 183 SGKDLDAALHQVSRQYQLRELFLVSAVIALALRFGGRSDQVLERMAAFMRDLEQARDELT 242

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E + SAWI+  LP  ++  +   +      + +DP G  LL  A      G   + 
Sbjct: 243 ALSAEVRLSAWILALLPIGLALFIIIFNNQLFMGMWHDPMGFRLLVFAMLLQAGGSYWLY 302

Query: 181 LMIN 184
            M  
Sbjct: 303 RMAR 306


>gi|45442766|ref|NP_994305.1| hypothetical protein YP_3004 [Yersinia pestis biovar Microtus str.
           91001]
 gi|51597674|ref|YP_071865.1| integral membrane protein. [Yersinia pseudotuberculosis IP 32953]
 gi|108809094|ref|YP_653010.1| hypothetical protein YPA_3103 [Yersinia pestis Antiqua]
 gi|108810711|ref|YP_646478.1| hypothetical protein YPN_0546 [Yersinia pestis Nepal516]
 gi|145597783|ref|YP_001161859.1| hypothetical protein YPDSF_0473 [Yersinia pestis Pestoides F]
 gi|150260281|ref|ZP_01917009.1| putative type II secretion system integral membrane protein
           [Yersinia pestis CA88-4125]
 gi|162418856|ref|YP_001604879.1| type II secretion system protein F domain [Yersinia pestis Angola]
 gi|165924990|ref|ZP_02220822.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165939873|ref|ZP_02228412.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166008715|ref|ZP_02229613.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166212189|ref|ZP_02238224.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167399582|ref|ZP_02305106.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167419108|ref|ZP_02310861.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167425112|ref|ZP_02316865.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167466379|ref|ZP_02331083.1| type II secretion system protein F domain protein [Yersinia pestis
           FV-1]
 gi|186896812|ref|YP_001873924.1| type II secretion system protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|218927880|ref|YP_002345755.1| hypothetical protein YPO0689 [Yersinia pestis CO92]
 gi|229837371|ref|ZP_04457534.1| Flp pilus assembly protein TadB [Yersinia pestis Pestoides A]
 gi|229840583|ref|ZP_04460742.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229842867|ref|ZP_04463019.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229900908|ref|ZP_04516032.1| Flp pilus assembly protein TadB [Yersinia pestis Nepal516]
 gi|294502755|ref|YP_003566817.1| hypothetical protein YPZ3_0645 [Yersinia pestis Z176003]
 gi|45437632|gb|AAS63182.1| putative membrane protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51590956|emb|CAH22614.1| Putative integral membrane protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108774359|gb|ABG16878.1| membrane protein [Yersinia pestis Nepal516]
 gi|108781007|gb|ABG15065.1| putative membrane protein [Yersinia pestis Antiqua]
 gi|115346491|emb|CAL19365.1| putative membrane protein [Yersinia pestis CO92]
 gi|145209479|gb|ABP38886.1| membrane protein [Yersinia pestis Pestoides F]
 gi|149289689|gb|EDM39766.1| putative type II secretion system integral membrane protein
           [Yersinia pestis CA88-4125]
 gi|162351671|gb|ABX85619.1| type II secretion system protein F domain protein [Yersinia pestis
           Angola]
 gi|165912184|gb|EDR30822.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165923190|gb|EDR40341.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165992054|gb|EDR44355.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166206935|gb|EDR51415.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166963102|gb|EDR59123.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167052086|gb|EDR63494.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167055875|gb|EDR65656.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|186699838|gb|ACC90467.1| type II secretion system protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229682247|gb|EEO78339.1| Flp pilus assembly protein TadB [Yersinia pestis Nepal516]
 gi|229690134|gb|EEO82191.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229696949|gb|EEO86996.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229705494|gb|EEO91504.1| Flp pilus assembly protein TadB [Yersinia pestis Pestoides A]
 gi|262360787|gb|ACY57508.1| hypothetical protein YPD4_0599 [Yersinia pestis D106004]
 gi|262364732|gb|ACY61289.1| hypothetical protein YPD8_0599 [Yersinia pestis D182038]
 gi|294353214|gb|ADE63555.1| hypothetical protein YPZ3_0645 [Yersinia pestis Z176003]
 gi|320016748|gb|ADW00320.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 291

 Score = 92.5 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 77/183 (42%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+   K    F  DFP  L +I  +  +G  ++  +     +   P+  E   +    +
Sbjct: 105 LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 164

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +               E  F  T+I +  Q GG L E +  LS+I+  +K  + K  
Sbjct: 165 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 224

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++ + + S  II  +P   S L+Y   P  +  +   P G  ++       +IGI+++R
Sbjct: 225 VMTAQIRMSVNIISIMPMLFSFLLYLLDPTTIEFVWQHPTGRFIIYYIIISEVIGILIIR 284

Query: 181 LMI 183
            M+
Sbjct: 285 KML 287


>gi|323493499|ref|ZP_08098621.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546]
 gi|323312322|gb|EGA65464.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546]
          Length = 302

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 88/181 (48%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             +++  +F       L +I R+V AGL V  A++ +       +  EF R+ +   LG 
Sbjct: 117 RKRQQVEEFEQSIVQVLGLISRAVSAGLSVPQAISQVAEAQDGLLGREFSRIEDQLALGH 176

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +  +++     +P +   +F+  + +    GG L + L +LSR L D + M+ KV++L+
Sbjct: 177 GMKHTLNEACVRLPYKAFRYFTIALVLNQNSGGQLRDILHSLSRTLHDNRTMQKKVKSLT 236

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + +A  +  LP  +  +V + +P    VLI    G  +L   A  ++IG + ++LM 
Sbjct: 237 AEPRMAARFLSLLPLGLLAVVAWVNPSLFGVLIETESGQSVLVYCAVSIVIGALSLQLMT 296

Query: 184 N 184
            
Sbjct: 297 R 297


>gi|317491687|ref|ZP_07950122.1| type II secretion system protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920121|gb|EFV41445.1| type II secretion system protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 290

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 81/176 (46%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
              F D FP  L ++  +V AG  +  A+          +   F R+    +LG      
Sbjct: 112 RRYFEDRFPEILSVVNAAVSAGNSIHQALHRCGEGIDGDLGVTFHRIDRRLNLGEDPERV 171

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
            +        +E  FF  V+ V  Q GG L   +  LSRI+ + KNM  +  A++ EA+ 
Sbjct: 172 FNDAWENYRYREFYFFVVVMLVSLQHGGQLRTLMGRLSRIVNNSKNMARRKSAMTSEART 231

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           SA I+ SLP      + + SP   + +++DP G ++L    A   IG++++ +++ 
Sbjct: 232 SAKIVASLPLLFFCGMKYFSPENFDFVVHDPVGRLILYYVIASEAIGMIIIWILLR 287


>gi|330959998|gb|EGH60258.1| hypothetical protein PMA4326_15684 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 294

 Score = 92.1 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 94/184 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    + R  + ++  P  LD  VRS+++G  +SDAV   +  +  P++    R+     
Sbjct: 109 VSWRYRVRVRRMIEQLPQLLDHSVRSLKSGRTLSDAVLYGIAAADQPLKDGMSRIERNVQ 168

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+SL ++           E   F+  + V  + GGN SE + NL R++R+R+    +++
Sbjct: 169 LGVSLPDAARDFAELYESDEFHLFALGLRVNHRYGGNASELMENLIRLIREREQAGRQLR 228

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + +A ++G LP  ++      +P Y+  + ND  G ++L +A    L+G +++ 
Sbjct: 229 AMTGETRMTALVLGLLPVGMAGYFMVVNPDYLLHMWNDGSGRIMLSMAFGLQLLGCLMLW 288

Query: 181 LMIN 184
            M+ 
Sbjct: 289 RMLR 292


>gi|270487716|ref|ZP_06204790.1| type II secretion system F domain protein [Yersinia pestis KIM D27]
 gi|270336220|gb|EFA46997.1| type II secretion system F domain protein [Yersinia pestis KIM D27]
          Length = 217

 Score = 92.1 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 77/183 (42%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+   K    F  DFP  L +I  +  +G  ++  +     +   P+  E   +    +
Sbjct: 31  LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 90

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +               E  F  T+I +  Q GG L E +  LS+I+  +K  + K  
Sbjct: 91  LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 150

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++ + + S  II  +P   S L+Y   P  +  +   P G  ++       +IGI+++R
Sbjct: 151 VMTAQIRMSVNIISIMPMLFSFLLYLLDPTTIEFVWQHPTGRFIIYYIIISEVIGILIIR 210

Query: 181 LMI 183
            M+
Sbjct: 211 KML 213


>gi|56460010|ref|YP_155291.1| Flp pilus assembly protein TadB [Idiomarina loihiensis L2TR]
 gi|56179020|gb|AAV81742.1| Flp pilus assembly protein TadB [Idiomarina loihiensis L2TR]
          Length = 233

 Score = 92.1 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 83/182 (45%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +HL K+R  K     P  L  +   +R+G  V  A+  + G    P+  E   ++  + +
Sbjct: 46  RHLKKQRYIKIEKQLPGMLIGLSNQLRSGTSVGAALKNLKGTLLAPLGQEVDELLRQEKV 105

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L++ +    R +P+  +      + +  + GG  S+    L+  L+ ++++K +   
Sbjct: 106 GKPLTDCLEDWQRRVPVFSIKLVVQSLVLGLKSGGQQSDLFLRLADNLQQQQHIKERQIT 165

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ +A+  A I+  +P  +  L+ +    +  +      G  +L VA   M+IG  +++ 
Sbjct: 166 LTSQARMQAKILVMMPVGLYFLLSWMKSEHTALFTESRVGIFMLIVALILMIIGGWMVKR 225

Query: 182 MI 183
           ++
Sbjct: 226 IM 227


>gi|258651873|ref|YP_003201029.1| type II secretion system protein [Nakamurella multipartita DSM
           44233]
 gi|258555098|gb|ACV78040.1| type II secretion system protein [Nakamurella multipartita DSM
           44233]
          Length = 284

 Score = 92.1 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 74/186 (39%), Gaps = 3/186 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L  KR A   + +P  +D +   VRAGL + +A+A I  +  + +R  F++      
Sbjct: 93  VSRLRHKRQADLRELWPEVVDNLTSGVRAGLSLPEALAAIGDRGPEQLRDPFKQFGADYR 152

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVI-SVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                ++S+ R+   +           +   +   G +L   L+ LS  LRD    +A++
Sbjct: 153 TTGRFNDSLDRLKATLADPVGDRVIESLRVAREVGGTDLGRLLSTLSGFLRDDARTRAEL 212

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            A    +  +A +  + P+ V  L+            + P G ++L   A    I   +M
Sbjct: 213 LARQSWSVNAARMAVAAPWLVLILLATQRETLQA--YDTPTGTVILIAGAVLSFIAYRLM 270

Query: 180 RLMINF 185
             +   
Sbjct: 271 IRIGRL 276


>gi|33593508|ref|NP_881152.1| hypothetical protein BP2525 [Bordetella pertussis Tohama I]
 gi|33572864|emb|CAE42798.1| putative membrane protein [Bordetella pertussis Tohama I]
 gi|332382916|gb|AEE67763.1| hypothetical protein BPTD_2483 [Bordetella pertussis CS]
          Length = 281

 Score = 92.1 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 87/171 (50%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
           P AL  +  ++RAG  ++ A+  +V     P+  EF  ++  Q +G+S   +++R+ R  
Sbjct: 111 PGALVAMACALRAGAGIAAALRQLVEHGEAPLAQEFGLLLREQRMGVSFDAALARLARRA 170

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
             + ++  +  + V +  GGNL+E L  +++ +  R  ++ +V+AL  + +  AWI+G+L
Sbjct: 171 SFESMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQAWIVGAL 230

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           P  +  ++    P  M  L +   G   L +       GI ++R ++  DV
Sbjct: 231 PPVLMGVLGRLQPEAMAALWHTLYGWAALALIVVLEGTGIWLIRRIVAIDV 281


>gi|33596529|ref|NP_884172.1| hypothetical protein BPP1911 [Bordetella parapertussis 12822]
 gi|33566298|emb|CAE37211.1| putative membrane protein [Bordetella parapertussis]
          Length = 281

 Score = 92.1 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 87/171 (50%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
           P AL  +  ++RAG  ++ A+  +V     P+  EF  ++  Q +G+S   +++R+ R  
Sbjct: 111 PGALVAMACALRAGAGIAAALRQLVEHGEAPLAQEFGLLLREQRMGVSFDAALARLARRA 170

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
             + ++  +  + V +  GGNL+E L  +++ +  R  ++ +V+AL  + +  AWI+G+L
Sbjct: 171 SFESMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQAWIVGAL 230

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           P  +  ++    P  M  L +   G   L +       GI ++R ++  DV
Sbjct: 231 PPVLMGVLGRLQPEAMAALWHTLYGWAALALIVVLEGTGIWLIRRIVAIDV 281


>gi|149927030|ref|ZP_01915288.1| type II secretion system protein [Limnobacter sp. MED105]
 gi|149824251|gb|EDM83471.1| type II secretion system protein [Limnobacter sp. MED105]
          Length = 302

 Score = 91.7 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 89/182 (48%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +  +KR  + L   PN LD +VR    G  ++ +    +  +  P++      ++ Q+ G
Sbjct: 119 YRQRKRRLQMLGQLPNFLDGVVRVSAVGYSLTVSFNTALENAEQPLKEALGLAVQMQYAG 178

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           L L +++ R+ R   L E    ++V+++    GG     L  L++ LRDR+    ++ A+
Sbjct: 179 LELDQAMHRLARVYGLSEFKLIASVVALALNYGGKSDILLGRLAQYLRDREQHHQEMLAM 238

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S EA+ SA  +  L   ++ ++   +P Y+  + ND  G MLL VA    + G  ++  M
Sbjct: 239 SSEARMSAVFMCCLTPALAGIILTLNPAYLGTMWNDDTGRMLLFVAGILQIAGAAIIYRM 298

Query: 183 IN 184
           + 
Sbjct: 299 VK 300


>gi|303241928|ref|ZP_07328421.1| Flp pilus assembly protein TadB-like protein [Acetivibrio
           cellulolyticus CD2]
 gi|302590483|gb|EFL60238.1| Flp pilus assembly protein TadB-like protein [Acetivibrio
           cellulolyticus CD2]
          Length = 305

 Score = 91.7 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 79/186 (42%), Gaps = 1/186 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K  I KR     +     LD +     AG  +  A+   + +S DP++S   +V     
Sbjct: 112 LKQRISKRKDLMTEQLIEWLDYMSSMGTAGKALLTALDYSIEKSRDPLKSVLEKVSANIK 171

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVI-SVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
              SLSE+   + + +P+ E    S  I                N+S  +++  ++   +
Sbjct: 172 KSQSLSEAFENVTKQIPIPEFKMVSMAISVHSEITNEGWPRTFENISSQMKENGDLFNTI 231

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            A + E+K +++IIG +P  +  ++    P Y+   +  P G +   +A    L G+ ++
Sbjct: 232 DASNTESKINSYIIGLMPLAMFIVIRLMQPEYVANSLESPIGKISYVIAGLLSLSGMYLV 291

Query: 180 RLMINF 185
           R + N 
Sbjct: 292 RRISNV 297


>gi|296130403|ref|YP_003637653.1| Type II secretion system F domain protein [Cellulomonas flavigena
           DSM 20109]
 gi|296022218|gb|ADG75454.1| Type II secretion system F domain protein [Cellulomonas flavigena
           DSM 20109]
          Length = 306

 Score = 91.7 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 91/186 (48%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R   F+   P    ++  +  AGL ++ A+A+   +   P   E  RV     
Sbjct: 120 LSRAQQRRNEAFIGQMPELARLLSNATSAGLSIASALALAANELDAPAGPEMARVASRMR 179

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L  +I  +   +P +EV+  ++ + V ++ GG+L  AL +++  L +RK ++ +V+
Sbjct: 180 FGEDLDTAIGELTARLPSREVAVLASTLLVSARSGGSLVTALRDIADTLEERKEIRREVR 239

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +  ++ ++ +++  + F +  L+    PG +  +  D  G   L V ++  + G +++R
Sbjct: 240 TVLAQSTSTGYLVIGMGFALLFLLNIIRPGTVEAMTEDWLGRGALVVGSSLFVGGFLLIR 299

Query: 181 LMINFD 186
            M  FD
Sbjct: 300 RMTRFD 305


>gi|330830428|ref|YP_004393380.1| Flp pilus assembly protein TadB [Aeromonas veronii B565]
 gi|328805564|gb|AEB50763.1| Flp pilus assembly protein TadB [Aeromonas veronii B565]
          Length = 294

 Score = 91.7 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 90/176 (51%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
            +F    P  +D ++R++R G P++D    +  Q    +   F ++ +   +G  +++ +
Sbjct: 117 EQFRTGLPEVIDGMIRALRVGAPLADIFQQVARQQRGLMSRLFAQMHDELQVGQPVAQVM 176

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            +    + + E  F + V+S+Q + GG LS+ LA L   LR R+ + A +Q ++ E++ S
Sbjct: 177 RQAANRVTVAEFQFLTIVLSLQQETGGRLSDVLAQLVETLRARQTLAASIQTITAESRNS 236

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           A ++ +LP  +  +++ T   +   L+    G  ++G  +  + +G+ ++R +   
Sbjct: 237 AKVLAALPVIILLVLFSTGREHFTYLMTTASGQWVMGYVSISVAVGLWLIRRLTRL 292


>gi|330819178|ref|YP_004348040.1| type II secretion system protein [Burkholderia gladioli BSR3]
 gi|327371173|gb|AEA62528.1| type II secretion system protein [Burkholderia gladioli BSR3]
          Length = 282

 Score = 91.7 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 94/187 (50%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  + K+R A      P+ L +   ++RAG   + A+  +V ++  P+  E   ++    
Sbjct: 96  LAIMRKRRIAMLERQLPDVLLMTAGALRAGASFAVAMESVVSEAPAPISGELELLMRELR 155

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L  ++  + R +P+ +    +  +++  ++GGNL+EAL +++R L  +  M+ K++
Sbjct: 156 LGIDLDIAMQNIERRIPVPDFLMVTAAVTISREVGGNLAEALESVARTLGAKLQMEGKIR 215

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ + +    ++  LP  +  ++ F  P  M  L ++  G + L V A    +G   + 
Sbjct: 216 ALTSQGRMQGIVMTLLPLGLMVVLNFMEPEAMAPLFHERVGWLTLAVIAVMEFLGYKAIS 275

Query: 181 LMINFDV 187
            + N DV
Sbjct: 276 KITNIDV 282


>gi|73539234|ref|YP_299601.1| type II secretion system protein [Ralstonia eutropha JMP134]
 gi|72122571|gb|AAZ64757.1| type II secretion system protein [Ralstonia eutropha JMP134]
          Length = 312

 Score = 91.3 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 89/184 (48%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + + +++   K L   P  LD +VR +  G  V  A    +  +  P+R    + +  Q 
Sbjct: 127 LWNRVRRIRQKMLLQLPGFLDGVVRLMTIGSSVPAAFQNSIANTDAPLRQCLVQAVHLQR 186

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L +++ +M R   LQE+   ++V+ +  + GG     +   +  +RDR+  + ++ 
Sbjct: 187 AGKELDQAVLQMGRIYHLQELVLLASVLRLSVRYGGRADVMMERTAAFMRDREQAQRELM 246

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E + SAWI+G LP  V   ++  + GY+ ++  DP G  +L  A A  + G  ++ 
Sbjct: 247 ALSAETRLSAWILGLLPLVVGGGLFVLNAGYVLMMWRDPTGKTMLLTALALEIAGAFMLY 306

Query: 181 LMIN 184
            +  
Sbjct: 307 RLAK 310


>gi|194366100|ref|YP_002028710.1| type II secretion system protein [Stenotrophomonas maltophilia
           R551-3]
 gi|194348904|gb|ACF52027.1| type II secretion system protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 318

 Score = 91.3 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 84/182 (46%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               K  A+ L   P+ LD +VR    G  +  A  V   Q+S P+R      +     G
Sbjct: 135 RRTSKLRAQLLHQLPDFLDNLVRLTALGNSLQAAFQVASMQTSAPLRGLLDTTVRYARSG 194

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + L  +++   +   +  +   S VI V  ++GG   + L  +   +RD +  + ++ A 
Sbjct: 195 MDLDRALALAAQPYRMDVLKVLSVVIGVSVRIGGRSDQILQRMGDFMRDLEQAQQELAAT 254

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E + SAW++G LP   + L+  +SP +   +++DP GH +L +A    L G  ++  +
Sbjct: 255 TSETRMSAWVLGLLPPACAVLMAISSPEFFQPVLHDPLGHKILLIALGLELFGAFLLYRL 314

Query: 183 IN 184
             
Sbjct: 315 AK 316


>gi|312199822|ref|YP_004019883.1| type II secretion system F [Frankia sp. EuI1c]
 gi|311231158|gb|ADP84013.1| Type II secretion system F domain protein [Frankia sp. EuI1c]
          Length = 285

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 69/178 (38%), Gaps = 3/178 (1%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
            A     +P+ +D +  +VRAG+ + + +A +  +   P+R  F R  E      S S  
Sbjct: 101 MADLRGMWPDVVDNLASAVRAGMSLPEGLAAVGQRGPAPLRGAFTRFGEEYRASGSFSSC 160

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           + ++   +           + +  +  G +L   L  LS  LR+    +A+++       
Sbjct: 161 LDKLADELADPVADRIIESLRLAREVGGTDLGRLLRTLSTFLREDARTRAELETRQSWTV 220

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            +A +  + P+ V  L+            + P G  +L    A  +   +VM+ +   
Sbjct: 221 NAARLALAAPWVVLLLLATRGQNVSA--YDSPTGVAVLVGGGAVSVFAYVVMKRIGRL 276


>gi|152981651|ref|YP_001355003.1| Flp pilus assembly protein TadB [Janthinobacterium sp. Marseille]
 gi|151281728|gb|ABR90138.1| Flp pilus assembly protein TadB [Janthinobacterium sp. Marseille]
          Length = 311

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 78/184 (42%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     +R  K +   P  LD +VR    G  +  A    V  + +P+R    R      
Sbjct: 126 LWLKATRRHQKMVRQLPAFLDTMVRLTIVGNSLESAFQATVLTTEEPLRELLDRSNRLVQ 185

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ L  ++ +  R   LQE+   + VI V  + GG     L  ++  +RDR+  + ++ 
Sbjct: 186 AGMDLEHALVQKARVFRLQELELIAAVIGVALRFGGRADTVLERMAAFMRDREYSQNELV 245

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E + SAWI+G LP  +   +   +      ++ DP G  LL  A     IG   + 
Sbjct: 246 ALSSETRLSAWILGLLPIGLGVFMVIFNNRMFVTMLEDPLGKNLLIFAVVLEAIGAYWLY 305

Query: 181 LMIN 184
            +  
Sbjct: 306 RLAK 309


>gi|51891535|ref|YP_074226.1| putative integral membrane protein [Symbiobacterium thermophilum
           IAM 14863]
 gi|51855224|dbj|BAD39382.1| putative integral membrane protein [Symbiobacterium thermophilum
           IAM 14863]
          Length = 270

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 84/190 (44%), Gaps = 6/190 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRVIE 57
           L ++      D    AL  +  S++AG  +  A+     + S        +  E      
Sbjct: 81  LARREAQALRDQLQEALLSLATSLKAGQSLPRALQRCAVELSRLHPGGGGLIREIELTAR 140

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              LG  + E++  +   +PL+E++     +    + GGN+ E + N+++++ DR  ++ 
Sbjct: 141 EVELGTPVDEALLDLRARVPLEELAALVDALVTTRRRGGNIVEVMGNVAQMVADRLAVER 200

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           ++Q L+ + +  A I+  +P  +  +V  T+P Y+ V      G   LG+    +  G  
Sbjct: 201 EIQVLTAQKRTEAAILAMIPLGIYLVVRVTNPAYLAVFHATLWGQAALGLILLAVAGGYW 260

Query: 178 VMRLMINFDV 187
           + + + + D+
Sbjct: 261 MAQRIASIDM 270


>gi|330873866|gb|EGH08015.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 198

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 89/184 (48%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    + R  + +      LD  VRS+++G  ++DAV   +  +  P++    R+     
Sbjct: 13  VSWRYEVRVRRMIQQLAQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIERNVQ 72

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+SL ++           E   F+  + V  + GGN SE + NL +++RDR+    +++
Sbjct: 73  LGVSLPDAARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 132

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + +A ++  LP  ++      +P Y+  + ND  G ++L +A      G +V+ 
Sbjct: 133 AMTGETRMTALVLALLPVGMAGYFLTVNPSYLLHMWNDDSGKIMLSMAFVLQATGCVVLW 192

Query: 181 LMIN 184
            M+ 
Sbjct: 193 RMLR 196


>gi|238796993|ref|ZP_04640497.1| Type II secretion system protein F domain protein [Yersinia
           mollaretii ATCC 43969]
 gi|238719253|gb|EEQ11065.1| Type II secretion system protein F domain protein [Yersinia
           mollaretii ATCC 43969]
          Length = 279

 Score = 90.9 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 80/183 (43%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   K     F  D P  + +I  +  +G  ++  +     + S P+  E   +    +
Sbjct: 93  LKISRKTHHTLFKRDLPEVILMINMAASSGASINQVLERCGNEISGPLGDELDLICRRLN 152

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S     +   +     E  F  T+I +  Q GG L E ++ LS+++   K  + K  
Sbjct: 153 LGESPEAVFNDAYQRFLYPEFYFLITIILLNLQQGGQLRELISRLSQVINKNKTSEQKKA 212

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++ + + S  II  +P   STL+YF  P  M  + N P G M+        +IGI ++R
Sbjct: 213 VMTAQTRMSVNIISLMPLVFSTLLYFLDPATMESMWNHPMGKMVFYYIILSEVIGITIIR 272

Query: 181 LMI 183
            M+
Sbjct: 273 TML 275


>gi|156741692|ref|YP_001431821.1| type II secretion system protein [Roseiflexus castenholzii DSM
           13941]
 gi|156233020|gb|ABU57803.1| type II secretion system protein [Roseiflexus castenholzii DSM
           13941]
          Length = 318

 Score = 90.9 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 2/184 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
                   F         ++  ++RAG+ +  A+  +  +  +P RSEFR+      LG 
Sbjct: 137 RQNAYVRAFNKQLVEVTQLLANALRAGMSIQQAIGEVSERVPEPARSEFRQTHHELLLGD 196

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           +L  ++  M R +  +++      I VQ Q GGNL   L  ++  L +R+ ++ ++ +L+
Sbjct: 197 NLPLALHDMRRRVCSRDLDVLINAIVVQHQAGGNLVRVLNGMANTLNERQRLEREIDSLT 256

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            EA+ SA ++  LP     ++  T  G    L     G +LLGV A   +    +++ + 
Sbjct: 257 SEARFSALVVMVLPIFFLLMIRDTPLG--EALFQTVIGWVLLGVFAVVQVAVYFLIQRVA 314

Query: 184 NFDV 187
             +V
Sbjct: 315 RIEV 318


>gi|227871817|ref|ZP_03990219.1| type II secretion system protein [Oribacterium sinus F0268]
 gi|227842318|gb|EEJ52546.1| type II secretion system protein [Oribacterium sinus F0268]
          Length = 224

 Score = 90.9 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 82/191 (42%), Gaps = 6/191 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRVI 56
            L KKR    +  F   L I+   + AG  + +A+   +    +       +  E +++ 
Sbjct: 34  KLRKKRQEVLVSQFKEMLSILSAYLSAGYSLENALFACIPDLENLLGKKCYMVEELKQIK 93

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
            +  +   L E++S+      + ++  FS +  V  + GG+L + +   S I+RD+  + 
Sbjct: 94  RSLSMNRPLEEALSQFALRSGVDDIHNFSEIFLVAKRSGGDLIQIIQQSSTIIRDKLTIT 153

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            ++  L+   +    I+  +PF +   +  +SP +  +L +   G  ++       L+ I
Sbjct: 154 EEIITLNASRRFEQKIMNGVPFFMIFYLNASSPEFFRILYSTIMGRGVMSFCLCIYLLAI 213

Query: 177 MVMRLMINFDV 187
            + + +I   V
Sbjct: 214 YLSQKIIAIPV 224


>gi|160935910|ref|ZP_02083284.1| hypothetical protein CLOBOL_00803 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441152|gb|EDP18869.1| hypothetical protein CLOBOL_00803 [Clostridium bolteae ATCC
           BAA-613]
          Length = 245

 Score = 90.9 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 83/192 (43%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRV 55
            +L K+R  +    F   + ++   + AG  + + + + + +        + +  EFR +
Sbjct: 54  SNLKKERARRLELQFKEGIQVLSSFLSAGYSLENGLTLSIKELEILFGRREMITEEFRIL 113

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
            +   +     E      R   +++V  F+ V+S   + GG L E +   + I+RD+  +
Sbjct: 114 SDGIRMNRPAEELFMDFGRRSGVEDVDNFAQVLSAAKRSGGELVEIIRQTAGIIRDKVQV 173

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K ++  +         I+  +PF +   +  TSPG+ +V+     G  ++ +  A     
Sbjct: 174 KEEIHTMLASRIFEQRIMNLIPFLIVLYIDLTSPGFFSVMYGTWMGRSVMTMCLAAYAGA 233

Query: 176 IMVMRLMINFDV 187
           +++   +++ +V
Sbjct: 234 LVLAGKILDIEV 245


>gi|254245562|ref|ZP_04938883.1| type II secretion system protein [Burkholderia cenocepacia PC184]
 gi|124870338|gb|EAY62054.1| type II secretion system protein [Burkholderia cenocepacia PC184]
          Length = 204

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 85/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R  K +   P+ LD IVR V  G  V  A    +  + +P+R     V     
Sbjct: 19  LASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQSALLTTEEPLRGCLDVVSRMLR 78

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  + +    +E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 79  GGIEIDRAMMHIAKIYRTEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELT 138

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SA+++  LP  + + V  T+P Y+  +  DP G  LL +A    ++G + + 
Sbjct: 139 AMSSETRLSAFVLVMLPIAIGSFVVMTNPKYLYGMWGDPSGRSLLMIAFLAQVVGSIWLY 198

Query: 181 LMINFD 186
            M    
Sbjct: 199 RMARLR 204


>gi|89068023|ref|ZP_01155440.1| type II/IV secretion system protein, TadC subfamily protein
           [Oceanicola granulosus HTCC2516]
 gi|89046262|gb|EAR52319.1| type II/IV secretion system protein, TadC subfamily protein
           [Oceanicola granulosus HTCC2516]
          Length = 987

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 75/160 (46%), Gaps = 4/160 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +    ++R  +  + FP++LD+++  V AG  +  ++  +  +       +  E+  V  
Sbjct: 824 VNKRQQERQQEIENGFPDSLDMMLVCVEAGQSLDQSIIRVARELKTGFPALAWEYELVAY 883

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G      +  M     + +V+ F TV+    Q G +++EAL   +  +RD++ M+A
Sbjct: 884 EMKAGKDKISVLKDMSERCGVNDVASFVTVLIQSQQFGTSIAEALRVYAGEMRDKRVMRA 943

Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVLI 156
           + +A ++  K + A ++ ++P  +  L+  +     + LI
Sbjct: 944 EEKANTLPTKMTLATMMLTVPPLLIILIGPSVFDIYDTLI 983


>gi|170022930|ref|YP_001719435.1| type II secretion system protein [Yersinia pseudotuberculosis
           YPIII]
 gi|169749464|gb|ACA66982.1| type II secretion system protein [Yersinia pseudotuberculosis
           YPIII]
          Length = 291

 Score = 90.6 bits (223), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 78/183 (42%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+   K    F  DFP  L +I  +  +G  ++  +     +   P+  E   +    +
Sbjct: 105 LKYSRSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 164

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +               E  F  T+I +  Q GG L E +  LS+I+  +K  + K  
Sbjct: 165 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 224

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++ + + S  II  +P   S L+Y   P  +  + + P G  ++       +IGI+++R
Sbjct: 225 VMTAQIRMSVNIISIMPILFSFLLYLLDPTTIEFVWHHPTGRFIIYYIIISEVIGILIIR 284

Query: 181 LMI 183
            M+
Sbjct: 285 KML 287


>gi|258515695|ref|YP_003191917.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
           771]
 gi|257779400|gb|ACV63294.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 306

 Score = 90.6 bits (223), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 90/186 (48%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  +I KR           L I   S+R+G+ ++ A+A  +G+ +  +  E +R+     
Sbjct: 119 LNAMISKRGELLAKQLHGCLIIWANSLRSGVSLAQAIAGSIGRVAPQINEELKRIKYDID 178

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S ++++ + +  +P+ E         +  QLGGNL+E   N+   + +R   +  ++
Sbjct: 179 LGFSSADALEKALVRIPVAEFKMVVMTAKIHRQLGGNLAERFDNICLTIEERIATRDVLK 238

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A + +AK  A + G +PF V  ++   SP Y+  +++ P G M+L ++   + +G   + 
Sbjct: 239 AHTTQAKLGAVVAGLMPFIVLIILKTMSPDYLKPMLDSPYGTMMLMLSVFLVFLGWFTIN 298

Query: 181 LMINFD 186
            +    
Sbjct: 299 KLSTIK 304


>gi|257791503|ref|YP_003182109.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|257475400|gb|ACV55720.1| type II secretion system protein [Eggerthella lenta DSM 2243]
          Length = 306

 Score = 90.6 bits (223), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 91/182 (50%), Gaps = 1/182 (0%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLS 64
           KKR+ +F     +AL +I  ++R G     +++ +     +P+ SE +RVIE   +  +S
Sbjct: 123 KKRSMQFETQLASALPMISENLRGGSSFEMSISAVAQFMPEPIHSELQRVIEDVSNASIS 182

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L ++  R+   +   E    +T + +Q + GGNL+  +  ++  +  R  +K KV++ + 
Sbjct: 183 LPDAFERLAIRIQSSEAHLLATAVMIQKEGGGNLASVVDTIAETIARRIELKNKVRSSTA 242

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            A+ SA  + ++PF V     + SPGYM+     P    ++  AA    IG+ ++  M  
Sbjct: 243 NARFSAVFVAAVPFAVLAFFTYGSPGYMDNFYAWPFWPAVIIAAAVLDGIGLFLISRMYK 302

Query: 185 FD 186
           F 
Sbjct: 303 FK 304


>gi|149175457|ref|ZP_01854078.1| putative tight adherence tadb-related transmembrane protein
           [Planctomyces maris DSM 8797]
 gi|148845725|gb|EDL60067.1| putative tight adherence tadb-related transmembrane protein
           [Planctomyces maris DSM 8797]
          Length = 285

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 78/180 (43%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
             +R  K  D   + +D + R+ + G  ++     +  ++  P+  E +       +G+S
Sbjct: 101 RSRRQNKINDQLSDMIDELARAAKTGRSLTHCFINVAEKTPAPLGDELKEASRRLQMGVS 160

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  +     +  ++  S  + V  + GG+L + L  L+R +RDR     +++  + 
Sbjct: 161 MKAALDGLYERTGVASLNILSMALIVHQETGGDLVKVLERLARTIRDRVLFLGRLRTATA 220

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            ++A+A ++  LP  +        P Y+  L+    G      A A  +IG + +  ++ 
Sbjct: 221 GSRATAVLMILLPPLILGFFILRDPTYLTTLMASSWGRGATFTAIALQVIGSLWVLRVLK 280


>gi|331082851|ref|ZP_08331973.1| hypothetical protein HMPREF0992_00897 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400180|gb|EGG79829.1| hypothetical protein HMPREF0992_00897 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 248

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 72/192 (37%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRV 55
           K  I+ R  +    F +AL+ +   + AG  + + +                +  EF  +
Sbjct: 57  KQQIRLRKKRLNYQFKDALNAMQVGISAGYSLDNTIREARKDLERLYGEKAEMAREFAYI 116

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                  + L E +  +     ++++  F+ V+    ++GGN+   L      + +R  +
Sbjct: 117 ERQLGHSIPLEELLYDLGIRSRVEDILNFTDVLIQAKKMGGNMRGILNRCISSIEERIQV 176

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K ++ A+    K    I+  +P  +   +  TSP +++VL  +  G  ++          
Sbjct: 177 KKEIDAVLASRKMEQKIMSFIPLGIILYMQITSPEFLSVLYGNSVGICVMTACLLLYTAA 236

Query: 176 IMVMRLMINFDV 187
                 +   DV
Sbjct: 237 FQWGVRLTQIDV 248


>gi|116671218|ref|YP_832151.1| type II secretion system protein [Arthrobacter sp. FB24]
 gi|116611327|gb|ABK04051.1| type II secretion system protein [Arthrobacter sp. FB24]
          Length = 284

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 74/183 (40%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   +KRTA     +P+ +D +  ++RAGL + +A+  +  +  + +R  FR       
Sbjct: 93  VRWRARKRTATLRQLWPDVVDHLRSAIRAGLSLPEALIQLGEKGPEELRHVFRDFGADYR 152

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKV 119
            G     +++R+   +           + +  +  G +L   L  L   LR+    ++++
Sbjct: 153 AGGQFDPALNRLKERLADPVADRIVEALRLTREVGGSDLGRLLGTLGEFLRESARTRSEL 212

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +A       +A +  + P+ V  L+  T P  +    N   G  +L        I   VM
Sbjct: 213 EARQSWTVNAARLAVAAPWIVMVLL-ATRPEAVAA-YNTATGAAVLLGGLVVSTICYSVM 270

Query: 180 RLM 182
             +
Sbjct: 271 LRI 273


>gi|33152382|ref|NP_873735.1| tight adherence protein B [Haemophilus ducreyi 35000HP]
 gi|21326711|gb|AAL92471.1| TadB [Haemophilus ducreyi]
 gi|33148605|gb|AAP96124.1| tight adherence protein B [Haemophilus ducreyi 35000HP]
          Length = 295

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 75/183 (40%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K   ++    F + FP  + I+  +  +G+ +  A+         P+  EF  + +    
Sbjct: 110 KMGQRRNKKMFDETFPEVIQILNAATSSGVSLLQAMERCGKDIRGPLGQEFTLIYKRLAR 169

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G              P +   FF  +I      GG + E ++ L R + D   M+ K +A
Sbjct: 170 GEDAMAVFQDSYSRYPYKSFYFFICIIRTNLSRGGQIREVVSRLGRAIADANKMEQKKKA 229

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ EA+ S  I+   P      + F +P   + ++NDP G ++L       L+GI  +  
Sbjct: 230 MTAEARMSVMIVACFPVFFFFFMKFMTPENFDFMMNDPGGRIILYYVVGSELLGIFTVWW 289

Query: 182 MIN 184
           ++ 
Sbjct: 290 LMR 292


>gi|260775649|ref|ZP_05884545.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608065|gb|EEX34234.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 306

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 87/184 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           M  L  +    F + FP+AL ++  +V AG  +  +   +      PV  EF+++ +   
Sbjct: 120 MNWLQAREKQHFEEAFPDALTMLASAVSAGEGLMQSFIFVGRTLDGPVGKEFKKMGDRLQ 179

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S +   S+  +  P     FF   +      GG + E +A L+R++   + ++ K  
Sbjct: 180 MGESTNAVFSKSCQRFPYPSFHFFVITMRANIDRGGQIKEVVAKLNRVMFSARAIEKKKY 239

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ EA+ SA I+G+LPF    L+ + SP     ++  P G  +L        IG+ ++ 
Sbjct: 240 ALTSEARVSAKIVGALPFFFLFLLQYISPDNFEFVMFHPDGRPVLYYVMISECIGMGLIW 299

Query: 181 LMIN 184
           L++ 
Sbjct: 300 LLMK 303


>gi|238027559|ref|YP_002911790.1| Flp pilus assembly protein TadB [Burkholderia glumae BGR1]
 gi|237876753|gb|ACR29086.1| Flp pilus assembly protein TadB [Burkholderia glumae BGR1]
          Length = 338

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 84/184 (45%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
             I  R  K +   P+ LD +VR V  G  V  A    +G +  P+R    +V      G
Sbjct: 155 RRISARRLKIVQQLPSFLDGVVRLVTLGNSVPAAFQGALGTTEMPLRRCLDQVSRMLRTG 214

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + +  ++  + +   ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+
Sbjct: 215 VEIDRAMLHIAKEYRVREFELVGSVLRLSVKYGGRADVMLERMATFMRDLEQAERELHAM 274

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAW++G LP  V + V  T+P Y   +  +  G ++L VA    ++G  ++  M
Sbjct: 275 SAETRLSAWVLGLLPVAVGSFVVSTNPQYFTAMWMNESGRLVLYVAFGLQMLGGYLLYRM 334

Query: 183 INFD 186
               
Sbjct: 335 ARLR 338


>gi|254524987|ref|ZP_05137042.1| Flp pilus assembly protein TadB [Stenotrophomonas sp. SKA14]
 gi|219722578|gb|EED41103.1| Flp pilus assembly protein TadB [Stenotrophomonas sp. SKA14]
          Length = 318

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 85/184 (46%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     +  A+ L   P+ LD +VR    G  +  A  V   Q+S P+R      +    
Sbjct: 133 IMRRTTRLRAQLLHQLPDFLDNLVRLTALGNSLQAAFQVASMQTSAPLRGLLDTTVRYAR 192

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ L  ++S   +   +  +   S VI V  ++GG   + L  +   +RD +  + ++ 
Sbjct: 193 SGMDLDRALSLAAQPYRMDVLKVLSVVIGVSVRIGGRSDQILQRMGDFMRDLEQAQQELA 252

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A + E + SAW++G LP   + L+   SP +   ++++P GH +L +A    L+G  ++ 
Sbjct: 253 ATTSETRMSAWVLGLLPPASAVLMAIASPDFFQPVLHEPLGHKVLLIALGLELVGAFLLY 312

Query: 181 LMIN 184
            +  
Sbjct: 313 RLAK 316


>gi|269926132|ref|YP_003322755.1| von Willebrand factor type A; type II secretion system protein
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269789792|gb|ACZ41933.1| von Willebrand factor type A; type II secretion system protein
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 643

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 1/158 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I +R  + L   P+ALD++  SV AGL    A+  IV +  + +  EF  V+    
Sbjct: 483 LSREITQRRRRILLQMPDALDLLTISVEAGLGFDAAMLEIVQKWDNDIAREFALVLSEMK 542

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S  +++  M   + L E+    + I    ++G ++   L+  S  +R R+  +A+  
Sbjct: 543 LGKSRRDALRSMAERVQLDEMKLLVSSIVQADEIGASIGRTLSIQSEQMRLRRRQRAEEL 602

Query: 121 ALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
                 K     ++   P     L+    P  +N L N
Sbjct: 603 GHKAVIKIIIPMVLFIFPAVFVVLLGPAIPTILNALGN 640


>gi|257069183|ref|YP_003155438.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810]
 gi|256560001|gb|ACU85848.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810]
          Length = 290

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 74/186 (39%), Gaps = 3/186 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   ++RT    + +P A+D I  ++RAGL + +A+  +     + +R  F        
Sbjct: 99  LRSAARRRTTAMREVWPEAVDHINSAIRAGLSLPEALVQLSRNGPEELRPAFAEYALDYQ 158

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKV 119
                +  + R+   +           + +     G +L   L  LS  LR+    +A++
Sbjct: 159 ASGDFASCLDRLKIRLADPVGDRIVEALRITRDVGGTDLGSLLRTLSAFLREDARTRAEL 218

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +A       +A +  + P+ V  L+  T P       +   G +L+ V A   LI   VM
Sbjct: 219 EARQSWTVNAARLALAAPWIVLALM-ATRPQAAQA-YDTATGMVLIVVGAVASLIAYRVM 276

Query: 180 RLMINF 185
            L+   
Sbjct: 277 LLIARL 282


>gi|167760286|ref|ZP_02432413.1| hypothetical protein CLOSCI_02659 [Clostridium scindens ATCC 35704]
 gi|167662169|gb|EDS06299.1| hypothetical protein CLOSCI_02659 [Clostridium scindens ATCC 35704]
          Length = 238

 Score = 89.8 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 75/189 (39%), Gaps = 6/189 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIET 58
            +K+  +FL  F  A+  +  ++  G  V +A+     +          +  EF  +   
Sbjct: 50  ARKKDQEFLLQFKEAIQAMASALNTGYSVENALLEAQKELRLLYPEDARISREFLVMARQ 109

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             L + + + +         ++V  F  V +   + GG++   + N +  + D+ ++K +
Sbjct: 110 LRLHVPMEQILEEFAGRSGQEDVENFVAVFAAARKSGGDMISIIRNTANQIGDKIDVKRE 169

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +  +    K    ++ ++P+ +   +  + P +M+ L  +  G  ++       L    +
Sbjct: 170 IDTVLAAKKYEFRVMAAIPYAIIGYMSLSFPEFMDSLYGNIMGIGVMSACLTMYLGAYYL 229

Query: 179 MRLMINFDV 187
              +I  +V
Sbjct: 230 GARIIRIEV 238


>gi|294146461|ref|YP_003559127.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
 gi|292676878|dbj|BAI98395.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
          Length = 297

 Score = 89.8 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 92/185 (49%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   ++R    ++  P  +D + +    G  ++ A+   +  +   VRS    V     
Sbjct: 111 VRRRAQRRVEALIEALPYYIDAVRQMQAVGNSLAQALDRALADAPAVVRSYIAPVARRLE 170

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  +++++  +   + + E+S  +  I    + GG++S  L NL+ ILR+R  +K +++
Sbjct: 171 LGAPVADAMQVLAERLRVPEISMLAAAIRTNMRYGGSISAVLLNLANILRERIRIKRELK 230

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A   EAK S  ++  +P     ++   +P Y++  + DPRGH L  VA     +G++VMR
Sbjct: 231 AAISEAKISGRVLIVMPLVAMAVLVAMNPDYIDFFLRDPRGHRLAVVALVLQGMGMLVMR 290

Query: 181 LMINF 185
            ++  
Sbjct: 291 RVMRL 295


>gi|291460200|ref|ZP_06599590.1| putative bacterial type II secretion system protein F domain
           protein [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417147|gb|EFE90866.1| putative bacterial type II secretion system protein F domain
           protein [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 256

 Score = 89.8 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 83/190 (43%), Gaps = 6/190 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIE 57
           L K+R  K L +F  AL ++   + AG  + +A  +   +       +  +  EF+++ E
Sbjct: 67  LRKQRQRKLLLEFREALSVLSSFLGAGYSLENAFRLSGRELSSLLGENAMISREFQKISE 126

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                L + + +        L E+  FS + SV  + GG L   +   S ++ D+  +  
Sbjct: 127 GLEQKLPIEDLLFDFSTRSGLDEIRNFSELFSVARKSGGELETIIRRSSELIHDKIGISE 186

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           ++  LS   +    I+  +PF +   +  +SP ++ +L     G +L+       L+ + 
Sbjct: 187 EILTLSAARRYEQRIMNLIPFLLLLYMKLSSPDFLRILYETAAGRILMSFCLFLYLLAVR 246

Query: 178 VMRLMINFDV 187
           +   +++ +V
Sbjct: 247 LSERILDIEV 256


>gi|330816718|ref|YP_004360423.1| Flp pilus assembly protein TadB [Burkholderia gladioli BSR3]
 gi|327369111|gb|AEA60467.1| Flp pilus assembly protein TadB [Burkholderia gladioli BSR3]
          Length = 329

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 84/184 (45%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
             I  R  K +   P+ LD +VR V  G  V  A    +G +  P+R    +V      G
Sbjct: 146 RRISARRLKIVRQLPSFLDGVVRLVTLGNSVPAAFQGALGTTEMPLRLCLDQVSRMLRTG 205

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + +  ++  + +   ++E     +V+ +  + GG     L  +S  +RD +  + +++A+
Sbjct: 206 VEIDRAMLHIAKEYRIREFELVGSVLRLSVKYGGRADVMLERMSTFMRDLEQAERELRAM 265

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAW++G LP  V + V  T+P Y   +  +  G ++L VA     IG  ++  M
Sbjct: 266 SAETRLSAWVLGLLPIAVGSFVVSTNPKYFMAMWMNESGRVVLYVAFILQAIGGFMLYRM 325

Query: 183 INFD 186
               
Sbjct: 326 ARLR 329


>gi|330953056|gb|EGH53316.1| type II secretion system protein [Pseudomonas syringae Cit 7]
          Length = 294

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 92/184 (50%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    + R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     
Sbjct: 109 VSWRYEVRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQ 168

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+SL ++           E   F+  + V  + GGN SE + NL +++RDR+    +++
Sbjct: 169 LGVSLPDAARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 228

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + +A ++  LP  ++      +P Y+  + +D  G ++L +A A  + G +V+ 
Sbjct: 229 AMTGETRMTALVLALLPITMAGYFLAVNPSYLLHMWDDDSGKIMLSMAFALQVTGCVVLW 288

Query: 181 LMIN 184
            M+ 
Sbjct: 289 RMLR 292


>gi|255281814|ref|ZP_05346369.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
 gi|255267487|gb|EET60692.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
          Length = 245

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 83/189 (43%), Gaps = 6/189 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIET 58
           +KKR  +    F   +  +  ++ AG  V +A    + +          +  EFR ++  
Sbjct: 57  MKKRQRELSAQFLAGMQSVSVALSAGCSVENAFGEALRELRQLYEEDAMIVREFRYIVVQ 116

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +  SL + ++ +     ++++  F+ + S   + GGNL   + N  + +  ++  + +
Sbjct: 117 LGMNRSLEQLLTGLAVRSGIEDIRNFADIFSAAKRTGGNLIAIIRNTVQCISQKEETRRE 176

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +       +    I+  +P  +   V   SPG+++V+ ++P G +++ +      +  + 
Sbjct: 177 INTCLSAKRLEQNIMSIVPCMILVYVQMVSPGFLDVMYHNPAGILIMSICLLVYFLAWLW 236

Query: 179 MRLMINFDV 187
            R +++ +V
Sbjct: 237 GRKIVSIEV 245


>gi|261251594|ref|ZP_05944168.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
 gi|260938467|gb|EEX94455.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
          Length = 302

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 88/181 (48%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             K++  +F       L +I R+V AGL V  A++ +       +  EF R+ +   LG 
Sbjct: 117 RKKQQIEEFEQSIVQVLGLISRAVSAGLSVPQAISQVAESQGGLLGREFSRIEDQLALGH 176

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +  +++     +P +   +F+  + +    GG L E L +LSR L D + M+ KV++L+
Sbjct: 177 GMRYTLNEACIRLPYKAFRYFTIALVLNQSNGGQLREILHSLSRTLHDNRTMQKKVKSLT 236

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + +A  +  LP  +  +V + +P    +LI    G  +L   A  +++G + +++M 
Sbjct: 237 SEPRMAARFLSLLPLGLLAVVAWINPSLFVLLIKTETGQSVLIYCAVSIVLGAITLQVMT 296

Query: 184 N 184
            
Sbjct: 297 K 297


>gi|332534352|ref|ZP_08410193.1| Flp pilus assembly protein TadB [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036171|gb|EGI72645.1| Flp pilus assembly protein TadB [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 291

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 78/178 (43%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           + AKF   F   ++ +   +  GL +  ++      +   ++ +   +++   +G     
Sbjct: 112 KLAKFEHHFLEFIETVQSCLSTGLSLQQSMQFADEHADPYIKKQSSLLLQRMSMGSDAET 171

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           S + ++     + V  F+  I   +Q   +L++ L ++  ++  R   + +++A     K
Sbjct: 172 SFAPLIERYNCETVRLFAHSIITHTQSQCDLTDMLKSVCNMMSLRTLDRQQLKAKLSGTK 231

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            +A   G LP+ +  L  +T P +   L+NDP G   + VA    L G + +RL +  
Sbjct: 232 YAAVFSGFLPYALIPLFSYTDPTWFEPLLNDPNGIAFITVALLCQLFGFLWLRLSLRV 289


>gi|190574782|ref|YP_001972627.1| putative type II secretion/pilus assembly transmembrane protein
           [Stenotrophomonas maltophilia K279a]
 gi|190012704|emb|CAQ46332.1| putative type II secretion/pilus assembly transmembrane protein
           [Stenotrophomonas maltophilia K279a]
          Length = 313

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 84/182 (46%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               K  A+ L   P+ LD +VR    G  +  A  V   Q+S P+R      +     G
Sbjct: 130 RRTTKLRAQLLHQLPDFLDNLVRLTALGNSLQAAFQVASMQTSAPLRGLLDTTVRYARSG 189

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + L  ++S   +   +  +   S VI V  ++GG   + L  +   +RD +  + ++ A 
Sbjct: 190 MDLDRALSLAAQPYRMDVLKVLSVVIGVSVRIGGRSDQILQRMGDFMRDLEQAQQELAAT 249

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E + SAW++G LP   + L+  +SP +   +++DP GH +L +A    L G  ++  +
Sbjct: 250 TSETRMSAWVLGLLPPASAVLMAISSPEFFQPVLHDPLGHKILLIALGLELFGAFLLYRL 309

Query: 183 IN 184
             
Sbjct: 310 AK 311


>gi|84501671|ref|ZP_00999843.1| type II/IV secretion system protein, TadC subfamily protein
           [Oceanicola batsensis HTCC2597]
 gi|84390292|gb|EAQ02851.1| type II/IV secretion system protein, TadC subfamily protein
           [Oceanicola batsensis HTCC2597]
          Length = 330

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 66/148 (44%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +     +R  +  + FP+ALD+++  V AG  +  A+  +  +   S   +  EF  V  
Sbjct: 159 INKRQAQRQEEITNGFPDALDMLLVCVEAGQSMDQAILRVAKEIRVSYPSLADEFELVSH 218

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G   +  +  M     + +++ F TV+   +  G ++++AL   +  +RD++ M+A
Sbjct: 219 EIKAGKDKASVLGDMAERCGVPDIASFVTVLIQSASFGTSVADALRVYASEMRDKRVMRA 278

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A  +  K +   +      +  ++ 
Sbjct: 279 EEKANKLPTKMTLATMMLTVPPLLIILI 306


>gi|238923483|ref|YP_002936999.1| hypothetical protein EUBREC_1103 [Eubacterium rectale ATCC 33656]
 gi|238875158|gb|ACR74865.1| Hypothetical protein EUBREC_1103 [Eubacterium rectale ATCC 33656]
          Length = 286

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 76/193 (39%), Gaps = 7/193 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRR 54
           ++ +IKK+  +    F + L+ +  S+ AG  V D+   +             + SE   
Sbjct: 95  IQSIIKKQKNQLNKQFRDMLEALSTSLGAGKNVIDSFRSVYDDMKMQYEDGAYIISELEL 154

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           ++      + + + +         +++  F+ V  +  + GGN+ + + +   IL D+  
Sbjct: 155 LLSGMDNNIDIEDLLLDFGERSGNEDIESFAKVFQICYRKGGNIKDTVRSTYEILNDKME 214

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +   ++ +    K    ++  +P  +  ++   SP +    +  P G M   VA    + 
Sbjct: 215 IAEDIETVVTANKTEQNVMLIMPIGLIGMMKLMSPDFAENFV-SPSGIMATTVAVIIFVA 273

Query: 175 GIMVMRLMINFDV 187
              + R ++   +
Sbjct: 274 AYFIGRKVLEIKI 286


>gi|84687272|ref|ZP_01015152.1| type II/IV secretion system protein, TadC subfamily protein
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84664705|gb|EAQ11189.1| type II/IV secretion system protein, TadC subfamily protein
           [Rhodobacterales bacterium HTCC2654]
          Length = 324

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 72/159 (45%), Gaps = 4/159 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +   +  R  +  + FP+ALD+++  V AG  +  A+  +  +       +  EF  V  
Sbjct: 161 VTRRVDSRKEEITNGFPDALDMMLVCVEAGQSLDQAIIRVAKEIRAGYPALADEFEIVSW 220

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G    + +  M     + +V  F TV+   +  G +++EAL   +  +RD++ M+A
Sbjct: 221 EIKAGKDRIQVLRDMGERCGVADVQSFVTVLIQSTSFGTSIAEALRVYAGEMRDKRVMRA 280

Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A ++  K + A ++ ++P  +  L+  +       L
Sbjct: 281 EEKANTLPTKMTLATMMLTVPPLLIILIGPSVYEVYKTL 319


>gi|260892677|ref|YP_003238774.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
 gi|260864818|gb|ACX51924.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
          Length = 283

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 82/164 (50%), Gaps = 1/164 (0%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                 ++  ++RAG  V  AV   V  +  P++ E   ++    LG SL E++    R 
Sbjct: 110 LEGVCGVMATALRAGQDVMSAVEGSVKYARPPLKRELEELVAEVKLGRSLGEAVENFARK 169

Query: 76  MPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            P  E    +  +++ Q   G  + +AL +++  +R+R  +K +V+A +   + SA ++G
Sbjct: 170 WPSPETRLLAYAVTLAQRMGGQAVPKALLSVTSSVRERLELKHQVRAKTTYQRVSAVVVG 229

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           ++P     +++F +PG++  L+  P G     V  A +++G ++
Sbjct: 230 AVPLWCLGVMWFLNPGFLGSLLETPGGRACFTVGVALLVVGWLL 273


>gi|317500896|ref|ZP_07959107.1| hypothetical protein HMPREF1026_01050 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316897694|gb|EFV19754.1| hypothetical protein HMPREF1026_01050 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 205

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 83/193 (43%), Gaps = 6/193 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRR 54
           ++ L +KR  +F   F NA+  +  +++AG  V +A+       +        +R EFR+
Sbjct: 13  LRDLCRKREKEFRVQFSNAIQAMGAALKAGYSVENAIREAEKDLAPMYEENVRIRKEFRK 72

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           ++    + +     + +    M  ++   F TV S     GG+    + N  +I+  + +
Sbjct: 73  MVHQLDMKMPAVSVMEQFSERMKQEDTEDFVTVFSSAKMSGGDSISIIRNAVKIISGKID 132

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
            + ++Q +    K    I+ ++PF +   +  T   +++VL  +  G   + +     + 
Sbjct: 133 TEQEIQTMFASKKLEFEIMCAVPFFIILYMKLTFGEFLSVLYENAAGRCFMTICLIAYIA 192

Query: 175 GIMVMRLMINFDV 187
                R +I+ +V
Sbjct: 193 AYSFGRKIIHIEV 205


>gi|160893700|ref|ZP_02074484.1| hypothetical protein CLOL250_01254 [Clostridium sp. L2-50]
 gi|156864685|gb|EDO58116.1| hypothetical protein CLOL250_01254 [Clostridium sp. L2-50]
          Length = 301

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 79/192 (41%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55
              I+KR  +   +F + +  +  S+ AG    +A      +       S  +  E + V
Sbjct: 110 SRCIEKRQRQLYVEFKDMVQSLAASMGAGYAFENAFTAAYEEMRKLYGDSGLIVKELKWV 169

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           I    +   +   +  M     ++E+S F+ V+ V  + GGN+   +   +  +  +  +
Sbjct: 170 IRGLRMHEDIEYLLQDMGERSGVREISEFAQVVGVAKRTGGNMVHIMKATAADISRKMEV 229

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + ++Q +    K    I+  +PF +   +   +  Y+++L  +  G +++ +  A  ++ 
Sbjct: 230 ELEIQTMIAAKKYEQKIMLIVPFFILAYLRIANGSYIHILYENIAGRLIMTICLAVSILS 289

Query: 176 IMVMRLMINFDV 187
               R MI   V
Sbjct: 290 AAWSRKMIRIGV 301


>gi|218132582|ref|ZP_03461386.1| hypothetical protein BACPEC_00441 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992308|gb|EEC58311.1| hypothetical protein BACPEC_00441 [Bacteroides pectinophilus ATCC
           43243]
          Length = 248

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 75/192 (39%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55
           + L K+   +    F + +  +  S+  G  + +A      +          +  EFR +
Sbjct: 57  RELAKREDERLAGAFKDGIIAVSFSLNVGYSIENAFREAYKEMQMLYGSESRIAKEFRII 116

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                   ++ + +        ++++ +F+ V     + GG+L   + N + ++RD+  +
Sbjct: 117 CNRMAQNENIEDILEDFAAESGVEDILYFAQVFRYAKRSGGDLMSIIRNTASVIRDKNEV 176

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
              ++ +    +    ++  +PF +   +   SP ++  L  +  G  ++    A   + 
Sbjct: 177 AEDIRTIISGRRMEQMVMNFVPFGIIVYLRLASPEFIEPLYGNAAGVAVMTGCLAVYALA 236

Query: 176 IMVMRLMINFDV 187
           I + R + +  V
Sbjct: 237 IALGRKITDIKV 248


>gi|299529715|ref|ZP_07043152.1| type II secretion system protein [Comamonas testosteroni S44]
 gi|298722578|gb|EFI63498.1| type II secretion system protein [Comamonas testosteroni S44]
          Length = 405

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 57/182 (31%), Gaps = 11/182 (6%)

Query: 4   LIKKRT----AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIE 57
            IKKR      K    D       +   ++AG+P+  +  ++    ++  V      +  
Sbjct: 51  KIKKRRTRGGKKIKPKDIALFTRQLATMMKAGVPLLQSFDIVGRGNTNPNVTKLLNDIRS 110

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G SLS +  +          +     +    +  G L   L  L+  +   + +K+
Sbjct: 111 DVETGTSLSAAFRKFPL-----YFNSLYCNLVEAGEAAGILESLLDRLATYMEKTEAIKS 165

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           K+++  M   +   +   +   +   V             D     LL +  +   +   
Sbjct: 166 KIKSALMYPTSVMIVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLLVMGISDYFVQYW 225

Query: 178 VM 179
            +
Sbjct: 226 WL 227



 Score = 36.3 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 39/131 (29%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+ +A+  + G S + +      R+      G SL+ +++       
Sbjct: 275 WTRTLSTMFAAGVPLVEALDSVGGASGNYLYKNATDRIQSEVSTGTSLTVAMANA----- 329

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G +   L   +       +      +  ME     ++   + 
Sbjct: 330 -NIFPSMVLQMCAIGEESGAIDHMLGKAADFYESEVDEMVAGLSSLMEPIIIVFLGTLIG 388

Query: 138 FCVSTLVYFTS 148
             V ++     
Sbjct: 389 GIVVSMYLPIF 399


>gi|220913152|ref|YP_002488461.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
 gi|219860030|gb|ACL40372.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
          Length = 285

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 75/183 (40%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   KKRTA     +P+ +D +  ++RAGLP+ +A+  +  +  + +R  FR       
Sbjct: 94  LRWRAKKRTALLRQLWPDVVDHLRSAIRAGLPLPEALIQLGDKGPEELRPVFREFGADYR 153

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKV 119
            G     S+ ++   +           + +  +  G +L + L  L+  LR+    ++++
Sbjct: 154 AGGQFDGSLDKLKNRLADPVADRIVEALRLTREVGGSDLGKLLGTLAEFLRENARTRSEL 213

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +A       +A +  + P+ V  L+  T P  +    N   G  +L       L     M
Sbjct: 214 EARQSWTVNAARLAVAAPWIVMLLL-ATRPEAVQA-YNTAIGAAVLLGGLVISLACYSTM 271

Query: 180 RLM 182
             +
Sbjct: 272 LRI 274


>gi|37680190|ref|NP_934799.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
 gi|37198937|dbj|BAC94770.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
          Length = 294

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/178 (25%), Positives = 93/178 (52%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
             +F    P+ +D + R+V+ G P+ D    +  Q     +  F  + +   LG S+   
Sbjct: 116 INEFNTQMPDIIDSMERAVKVGAPLHDIFFALSEQYQGSAKRLFLAMHDRLKLGHSVERV 175

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           +    + MP QE  F +T++S+QS+ GG LS  L  L + LR+R  M+++V+ ++ E++ 
Sbjct: 176 MQFAAQQMPSQEFRFLTTLLSLQSETGGKLSHMLKQLGQTLRERSLMESRVRTITSESRT 235

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           SA ++  LP  +  ++Y ++  + + L+ D  G  +L      ++ G++++R +  F 
Sbjct: 236 SAKVLAILPPALIGVLYGSAKEHFDYLLRDATGQWILLYVVLSVVTGLLLIRQLTKFK 293


>gi|295395217|ref|ZP_06805425.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971979|gb|EFG47846.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 290

 Score = 88.3 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 70/185 (37%), Gaps = 5/185 (2%)

Query: 4   LIKKRTAKFLDD--FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
            I+ R         +P A+D +   VRAGL + +AV  +  +    +R  F         
Sbjct: 100 KIRARKTSVSRRTLWPEAIDHLSSGVRAGLSLPEAVCGLSARGPVALRPLFEVFAREYRA 159

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQ 120
             S S +++R                + +  +  G +L   L  LS+ LR+    +A++ 
Sbjct: 160 TGSFSLALNRFKESAADPVADRMVAALHITREVGGTDLGAMLKTLSQFLREDARTRAELT 219

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A        A +  + P+ V  L+  T P   +   N  +G +LL V     L    VM+
Sbjct: 220 ARQSWTVTGAKLGVAAPWVVLGLL-ATRPETADA-YNTAQGTVLLVVGLVISLCAYSVMK 277

Query: 181 LMINF 185
            +   
Sbjct: 278 RIGRL 282


>gi|198284410|ref|YP_002220731.1| type II secretion system protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218666085|ref|YP_002427078.1| tight adherence protein TadB, putative [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198248931|gb|ACH84524.1| type II secretion system protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218518298|gb|ACK78884.1| tight adherence protein TadB, putative [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 313

 Score = 88.3 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 85/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++ I  R +  +   P  LD +VR+ R G  +  A+      +  PVR  F +++  Q 
Sbjct: 128 IRYRIGLRRSAAILALPGFLDAVVRASRVGASLPAALLSATKDAHGPVREVFNQIMRRQQ 187

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + +++  + +   +QE++  +TV+ +  + GG     L  ++  LR R   +A+  
Sbjct: 188 SGTPIDQAMLTVGKRYQMQELAIIATVLRLNMRYGGRTDVVLERIADWLRGRVMAQAEFN 247

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E +  A I+  +   ++  +   +  Y+  +     G MLL      ++ G++++ 
Sbjct: 248 ALSAETRLGALILSLMIPGLALYIVLMNHSYLQGMWAVSTGRMLLVAGGTLLVTGVVLLN 307

Query: 181 LMINFD 186
            M    
Sbjct: 308 RMAKLR 313


>gi|163801323|ref|ZP_02195222.1| Flp pilus assembly protein TadB [Vibrio sp. AND4]
 gi|159174812|gb|EDP59612.1| Flp pilus assembly protein TadB [Vibrio sp. AND4]
          Length = 289

 Score = 88.3 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 92/184 (50%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K    K +  F D F  +L +I R++ +G  ++ ++      +   +R EF R+I+  +
Sbjct: 102 LKEYHAKLSNYFEDKFAFSLRMISRNLISGRTIAASIESASRHTMGKIRIEFERIIKQIN 161

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +L E+++      P +  + FS  + +  + GG++ ++L  L++ L   + ++ K  
Sbjct: 162 AGNTLEEALTTGENIYPYKGYTVFSANVKMSLKRGGSIKDSLDELAQDLVASQVIRKKTL 221

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           +L+ E++ +A I+  LPF +  ++   +      L  +  G  ++      + IG ++++
Sbjct: 222 SLTSESRGAAKILAVLPFIMLLVLKSFAVENFEYLFGEQYGKYIIIYVVTSVSIGFVLIK 281

Query: 181 LMIN 184
            MI+
Sbjct: 282 RMID 285


>gi|264676897|ref|YP_003276803.1| type II secretion system protein [Comamonas testosteroni CNB-2]
 gi|262207409|gb|ACY31507.1| type II secretion system protein [Comamonas testosteroni CNB-2]
          Length = 405

 Score = 88.3 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 57/182 (31%), Gaps = 11/182 (6%)

Query: 4   LIKKRT----AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIE 57
            IKKR      K    D       +   ++AG+P+  +  ++    ++  V      +  
Sbjct: 51  KIKKRRTRGGKKIKPKDIALFTRQLATMMKAGVPLLQSFDIVGRGNTNPNVTKLLNDIRS 110

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G SLS +  +          +     +    +  G L   L  L+  +   + +K+
Sbjct: 111 DVETGTSLSAAFRKFPL-----YFNSLYCNLVEAGEAAGILESLLDRLATYMEKTEAIKS 165

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           K+++  M   +   +   +   +   V             D     LL +  +   +   
Sbjct: 166 KIKSALMYPTSVMIVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLLVMGISDYFVQYW 225

Query: 178 VM 179
            +
Sbjct: 226 WL 227



 Score = 35.9 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 39/131 (29%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+ +A+  + G S + +      R+      G SL+ +++       
Sbjct: 275 WTRTLSTMFAAGVPLVEALDSVGGASGNYLYRNATDRIQSEVSTGTSLTVAMANA----- 329

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G +   L   +       +      +  ME     ++   + 
Sbjct: 330 -NIFPSMVLQMCAIGEESGAIDHMLGKAADFYESEVDEMVAGLSSLMEPIIIVFLGTLIG 388

Query: 138 FCVSTLVYFTS 148
             V ++     
Sbjct: 389 GIVVSMYLPIF 399


>gi|110833083|ref|YP_691942.1| hypothetical protein ABO_0222 [Alcanivorax borkumensis SK2]
 gi|110646194|emb|CAL15670.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
          Length = 268

 Score = 88.3 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 75/182 (41%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
            +  +KR     +  P  +D ++R + AG  +  A+   +  +         R+      
Sbjct: 81  NYRYQKRRRLIFESTPEVIDDVIRGIDAGRSLEQALVNALNDAPKVFFPLLFRLRSAVES 140

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G   +  I    +   +  ++F +  +   S  G  +   L  +SR LR ++ M+ +  A
Sbjct: 141 GRDYTGLIDDFSKLYRIPPLTFVAVALRTSSHYGSAVRPVLKKVSRSLRSQQEMRREFLA 200

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            + E + +A     LP  +   +   +  + +VL++   G  +L  +   +++G +++  
Sbjct: 201 ATAETRFTAMAFAVLPLVIGASLIGLNESFRDVLLDTESGQKMLMTSIGLIVVGTIIVFR 260

Query: 182 MI 183
           M+
Sbjct: 261 MV 262


>gi|188592035|ref|YP_001796633.1| type II secretion system protein [Cupriavidus taiwanensis LMG
           19424]
 gi|170938409|emb|CAP63396.1| Type II secretion system protein [Cupriavidus taiwanensis LMG
           19424]
          Length = 308

 Score = 88.3 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 91/182 (50%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           H +++   K L   P  LD +VR +  G  V  A    +  +  P+R    + +  Q  G
Sbjct: 125 HRVRRLHKKLLSQLPGFLDGVVRLMTIGSSVPAAFQNSIANTEAPLRQCLVQAVHLQRAG 184

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             L +++ ++ R   ++E+   ++V+ +  + GG     +   +  +RDR+  + ++ AL
Sbjct: 185 KELDQAVLQVGRAYKVEELVLVASVLRLSVRYGGRADVVMERTATFMRDREQAQRELMAL 244

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAW++G LP  V+  ++  + GY+ ++  DP G  +L  AAA  + G +++  +
Sbjct: 245 SAETRLSAWVLGLLPLVVAGGLFTLNAGYILMMWKDPTGKTMLLSAAALEVAGALMLYRL 304

Query: 183 IN 184
             
Sbjct: 305 AK 306


>gi|311111714|ref|YP_003982936.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
 gi|310943208|gb|ADP39502.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
          Length = 284

 Score = 88.3 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 73/183 (39%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + H  K R  K    +P+A+D +  ++RAGL + +A+  +  +    +R  F R      
Sbjct: 93  VNHRAKVREGKLWQLWPDAVDHLRSAIRAGLSLPEALIQLSYRGPYELREAFARFGSDYR 152

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVI-SVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                  S++R+  Y+           +   +   G +L   L  LS  LR+    +A++
Sbjct: 153 ATGDFVASLNRLKEYVADPVADNIVEALKIAREVGGSDLGRLLGTLSNFLRENARTRAEL 212

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           QA       +A +    P+ V  L+       +  + N   G +L+   A   +I   +M
Sbjct: 213 QARQSWTVNAARLACVAPWVVLMLMAT--QPAVRNIYNSFAGFVLMFAGAGLSVIAYRIM 270

Query: 180 RLM 182
             +
Sbjct: 271 LRI 273


>gi|300741823|ref|ZP_07071844.1| putative bacterial type II secretion system protein F domain
           protein [Rothia dentocariosa M567]
 gi|300381008|gb|EFJ77570.1| putative bacterial type II secretion system protein F domain
           protein [Rothia dentocariosa M567]
          Length = 284

 Score = 88.3 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 73/183 (39%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + H  K R  K    +P+A+D +  ++RAGL + +A+  +  +    +R  F R      
Sbjct: 93  VNHRAKVREGKLWQLWPDAVDHLRSAIRAGLSLPEALIQLSYRGPYELREAFARFGSDYR 152

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVI-SVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                  S++R+  Y+           +   +   G +L   L  LS  LR+    +A++
Sbjct: 153 ATGDFVASLNRLKEYVADPVADNIVEALKIAREVGGSDLGRLLGTLSNFLRENARTRAEL 212

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           QA       +A +    P+ V  L+       +  + N   G +L+   A   +I   +M
Sbjct: 213 QARQSWTVNAARLACVAPWVVLMLMAT--QPAVRNIYNSFAGFVLMFAGAGLSVIAYRIM 270

Query: 180 RLM 182
             +
Sbjct: 271 LRI 273


>gi|320156057|ref|YP_004188436.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
 gi|319931369|gb|ADV86233.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
          Length = 294

 Score = 87.9 bits (216), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 46/178 (25%), Positives = 93/178 (52%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
             +F    P+ +D + R+V+ G P+ D    +  Q     +  F  + +   LG S+   
Sbjct: 116 INEFNMQMPDIIDSMERAVKVGAPLHDIFFALSEQYQGSAKRLFLAMHDRLKLGHSVERV 175

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           +    + MP QE  F +T++S+QS+ GG LS  L  L + LR+R  M+++V+ ++ E++ 
Sbjct: 176 MQFAAQQMPSQEFRFLTTLLSLQSETGGKLSHMLKQLGQTLRERSLMESRVRTITSESRT 235

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           SA ++  LP  +  ++Y ++  + + L+ D  G  +L      ++ G++++R +  F 
Sbjct: 236 SAKVLAILPPALIGVLYGSAKEHFDYLLRDATGQWILLYVVLSVVTGLLLIRQLTKFK 293


>gi|153853656|ref|ZP_01995036.1| hypothetical protein DORLON_01027 [Dorea longicatena DSM 13814]
 gi|149753811|gb|EDM63742.1| hypothetical protein DORLON_01027 [Dorea longicatena DSM 13814]
          Length = 258

 Score = 87.9 bits (216), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 66/182 (36%), Gaps = 6/182 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIETQHLGLSL 65
           F   F   +  +  ++  G  V +A      +          +  E   +     + + +
Sbjct: 77  FQKQFREMIQTLSSALNTGYSVENAFYETQKELKIQYPEEARISRELLLITRKLRMHIPV 136

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            + +      +P ++V  F TV     + GG++   + N +  + D+  +K ++  L   
Sbjct: 137 EQVLEEFAEKVPSEDVKSFVTVFVTAKKSGGDMIGIIRNTTSQIGDKIEVKREIDTLLAA 196

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            K    I+  +P+ +   +  +   +M  L  +  G  ++ +     +    +   ++  
Sbjct: 197 KKYEFQIMSMVPYGIIAYMSLSFSDFMEELYGNVTGIGVMTLCLGIYVGAYYLGVRLLRI 256

Query: 186 DV 187
           DV
Sbjct: 257 DV 258


>gi|27365655|ref|NP_761183.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
 gi|27361803|gb|AAO10710.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
          Length = 294

 Score = 87.9 bits (216), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 46/178 (25%), Positives = 93/178 (52%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
             +F    P+ +D + R+V+ G P+ D    +  Q     +  F  + +   LG S+   
Sbjct: 116 INEFSMQMPDIIDSMERAVKVGAPLHDIFFALSEQYQGSAKRLFLAMHDRLKLGHSVERV 175

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           +    + MP QE  F +T++S+QS+ GG LS  L  L + LR+R  M+++V+ ++ E++ 
Sbjct: 176 MQFAAQQMPSQEFRFLTTLLSLQSETGGKLSHMLKQLGQTLRERSLMESRVRTITSESRT 235

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           SA ++  LP  +  ++Y ++  + + L+ D  G  +L      ++ G++++R +  F 
Sbjct: 236 SAKVLAILPPVLIGVLYGSAKEHFDYLLRDATGQWILLYVVLSVVTGLLLIRQLTKFK 293


>gi|255264846|ref|ZP_05344188.1| type II secretion system protein [Thalassiobium sp. R2A62]
 gi|255107181|gb|EET49855.1| type II secretion system protein [Thalassiobium sp. R2A62]
          Length = 323

 Score = 87.9 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 73/159 (45%), Gaps = 4/159 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +    + R     + FP++LD+++  V AG  +  ++  +  +       + SE+  V  
Sbjct: 160 VTKRQQTRQEAITNGFPDSLDMMLVCVEAGQSLDQSILRVSQELKSGFPDLASEYEIVSH 219

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G   +  +  M     + +++ F TV+      G +++EAL   +  +RD++ M+A
Sbjct: 220 EMKAGKDKTSVLRDMSERCGVPDIASFVTVLIQSQSFGTSIAEALRVYAGEMRDKRVMRA 279

Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A ++  K + A ++ ++P  +  L+  +  G    L
Sbjct: 280 EEKANTLPTKMTLATMMLTVPPLLIILIGPSVYGIAETL 318


>gi|33596972|ref|NP_884615.1| hypothetical protein BPP2379 [Bordetella parapertussis 12822]
 gi|33566423|emb|CAE37676.1| putative membrane protein [Bordetella parapertussis]
          Length = 306

 Score = 87.9 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/179 (24%), Positives = 77/179 (43%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K    + +   P  LD +VR +  G  V+ A    +G    P+    +R       G  L
Sbjct: 126 KADRRRMVHQLPTFLDALVRLITIGNSVNAAFQNALGSVEQPLLEVLQRADSQVRSGKDL 185

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             ++ ++ R   L+E+   S VI++  + GG   + L  ++  +RD +  + ++ ALS E
Sbjct: 186 DAALHQVSRQYQLRELFLVSAVIALALRFGGRSDQVLERMAAFMRDLEQARDELTALSAE 245

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            + SAWI+  LP  ++  +   +      + +DP G  LL  A      G   +  M  
Sbjct: 246 VRLSAWILALLPIGLALFIIIFNNQLFMGMWHDPMGFRLLVFAMLLQAGGSYWLYRMAR 304


>gi|221068971|ref|ZP_03545076.1| type II secretion system protein [Comamonas testosteroni KF-1]
 gi|220713994|gb|EED69362.1| type II secretion system protein [Comamonas testosteroni KF-1]
          Length = 405

 Score = 87.9 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 56/182 (30%), Gaps = 11/182 (6%)

Query: 4   LIKKRT----AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIE 57
            IKKR      K    D       +   ++AG+P+  +  ++    ++  V      +  
Sbjct: 51  KIKKRRTRGGKKIKPKDIALFTRQLATMMKAGVPLLQSFDIVGRGNTNPNVTKLLNDIRS 110

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G SLS +  +                +    +  G L   L  L+  +   + +K+
Sbjct: 111 DVETGTSLSAAFRKFPL-----YFDSLYCNLVEAGEAAGILESLLDRLATYMEKTEAIKS 165

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           K+++  M   +   +   +   +   V             D     LL +  +   +   
Sbjct: 166 KIKSALMYPTSVMIVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLLVMGISEYFVQYW 225

Query: 178 VM 179
            +
Sbjct: 226 WL 227



 Score = 35.9 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 39/131 (29%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+ +A+  + G S + +      R+      G SL+ +++       
Sbjct: 275 WTRTLSTMFAAGVPLVEALDSVGGASGNYLYKNATDRIQSEVSTGTSLTVAMANA----- 329

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G +   L   +       +      +  ME     ++   + 
Sbjct: 330 -NIFPSMVLQMCAIGEESGAIDHMLGKAADFYESEVDEMVAGLSSLMEPIIIVFLGTLIG 388

Query: 138 FCVSTLVYFTS 148
             V ++     
Sbjct: 389 GIVVSMYLPIF 399


>gi|87310970|ref|ZP_01093095.1| hypothetical protein DSM3645_15370 [Blastopirellula marina DSM
           3645]
 gi|87286260|gb|EAQ78169.1| hypothetical protein DSM3645_15370 [Blastopirellula marina DSM
           3645]
          Length = 317

 Score = 87.9 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 93/184 (50%), Gaps = 3/184 (1%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           H   +RT       P A   I R++RAG  +  A+ ++      P+  EF    E QHLG
Sbjct: 136 HRRLQRTEMLTQQLPEAFSAISRALRAGQGLPTAIQMVANDFPKPLSEEFTHYYEQQHLG 195

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           ++   ++  MVR + + E+  F+  + VQ + GGNL+E L  L+ ++R R  ++ +V+AL
Sbjct: 196 VANEVALRDMVRRVDVMELRIFAVALIVQQRAGGNLAELLKKLADLIRKRVKLRRRVKAL 255

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E +  A ++ ++P  V   +   +P Y +VL      + +L   A    IG  ++  +
Sbjct: 256 TGEGRMQAVVLIAMPVLVLAALAVVAPDYSSVLWEH---YEILIGCAISQCIGAFLISRI 312

Query: 183 INFD 186
           +N D
Sbjct: 313 VNID 316


>gi|33593027|ref|NP_880671.1| hypothetical protein BP1999 [Bordetella pertussis Tohama I]
 gi|33563402|emb|CAE42279.1| putative membrane protein [Bordetella pertussis Tohama I]
 gi|332382439|gb|AEE67286.1| hypothetical protein BPTD_1969 [Bordetella pertussis CS]
          Length = 306

 Score = 87.9 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/179 (24%), Positives = 77/179 (43%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K    + +   P  LD +VR +  G  V+ A    +G    P+    +R       G  L
Sbjct: 126 KADRRRMVHQLPTFLDALVRLITIGNSVNAAFQNALGSVEQPLLEVLQRADSQVRSGKDL 185

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             ++ ++ R   L+E+   S VI++  + GG   + L  ++  +RD +  + ++ ALS E
Sbjct: 186 DAALHQVSRQYQLRELFLVSAVIALALRFGGRSDQVLERMAAFMRDLEQARDELTALSAE 245

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            + SAWI+  LP  ++  +   +      + +DP G  LL  A      G   +  M  
Sbjct: 246 VRLSAWILALLPIGLALFIIIFNNQLFMGMWHDPMGFRLLVFAMLLQAGGSYWLYRMAR 304


>gi|224824220|ref|ZP_03697328.1| type II secretion system protein [Lutiella nitroferrum 2002]
 gi|224603639|gb|EEG09814.1| type II secretion system protein [Lutiella nitroferrum 2002]
          Length = 314

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 67/165 (40%), Gaps = 4/165 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   ++ R  +  ++FP+A+D+++  V AGL +  A+  +  +    S  +  E   V  
Sbjct: 148 LSRRVENRQREIFNNFPDAIDLLLVCVEAGLGLDAALLKVGEEMRIKSPILADELHLVNL 207

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +     +QEV     ++    + G ++ E+L   +  LR ++ ++A
Sbjct: 208 ELRAGSTKERALRNLAIRTGVQEVDTLVAMLIQSDRFGTSIGESLRVHADDLRTKRRLRA 267

Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           +  A  +        I    P  +  L+         VL+    G
Sbjct: 268 EEAAAKIPLKLLFPLIFCIFPALLLVLLGPAFIQIYRVLLPTLGG 312


>gi|163840095|ref|YP_001624500.1| flp pilus assembly protein [Renibacterium salmoninarum ATCC 33209]
 gi|162953571|gb|ABY23086.1| type II secretion system protein [Renibacterium salmoninarum ATCC
           33209]
          Length = 284

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 77/183 (42%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   K+R A   + +P+ +D +  ++RAGL +++A+  +  +  +P+R  FR       
Sbjct: 93  VRRRAKRRIAVLRELWPDVVDHLRSAIRAGLSLAEALIQLAEKGPEPLRPYFRDFGADYR 152

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKV 119
            G S   S+  +   +           + +  +  G +L   L  LS  LR+    ++++
Sbjct: 153 AGGSFETSLDLLKERLADPVADRIFEALRLTREVGGSDLGLLLGTLSEFLRESARTRSEL 212

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +A       +A I  + P+ V  L+       +    N P G +LL       ++   +M
Sbjct: 213 EARQSWTVNAARIAVAAPWIVLVLLAAQPNALLA--YNSPSGWILLLAGLIISVVCYRLM 270

Query: 180 RLM 182
             +
Sbjct: 271 LRI 273


>gi|307295328|ref|ZP_07575167.1| Type II secretion system F domain protein [Sphingobium
           chlorophenolicum L-1]
 gi|306878831|gb|EFN10050.1| Type II secretion system F domain protein [Sphingobium
           chlorophenolicum L-1]
          Length = 297

 Score = 87.5 bits (215), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 91/185 (49%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   + R    ++  P  +D + +    G  ++ A+   +  +   V      V     
Sbjct: 111 VRRRAQVRVEALIEALPYYIDAVRQMQAVGNSLAQALDRALADAPGVVWGFIAPVARRLE 170

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  +++++  +   + + E+S  +  I    + GG++S  L NL+ ILR+R  +K +++
Sbjct: 171 LGAPVADAMQMLAERLRVPEISMLAAAIRTNMRYGGSISAVLLNLANILRERIRIKRELK 230

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A   EA+ S  ++  +P     L+   +PGY++  + DPRGH L  VA A   +G++VMR
Sbjct: 231 AAISEARISGRVLIVMPLAAMALLVAMNPGYVDFFLRDPRGHRLALVAMALQGMGMLVMR 290

Query: 181 LMINF 185
            ++  
Sbjct: 291 RVMRL 295


>gi|148655425|ref|YP_001275630.1| type II secretion system protein [Roseiflexus sp. RS-1]
 gi|148567535|gb|ABQ89680.1| type II secretion system protein [Roseiflexus sp. RS-1]
          Length = 311

 Score = 87.5 bits (215), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 1/158 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   IKKR    +   P+ALD++   V AGL    A+  +  +  DP+  EF+RV+    
Sbjct: 151 LGQQIKKRKKAIVKALPDALDLLCICVEAGLSFDQAMQRLTEKWDDPLSKEFKRVLSDTR 210

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG    +++  M+    + +V  F   +    QLG ++   L   S  +R R+  +A+ +
Sbjct: 211 LGRPRRDAMKDMIDRCGVDDVQTFIGAVIQAEQLGVSIGRILRIQSDQMRIRRRQRAEEE 270

Query: 121 ALSMEAKA-SAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           A     K     +    P     ++    P  M  L  
Sbjct: 271 AHKAPIKMLFPMVFLIFPALFIVILGPAVPRIMKSLGG 308


>gi|331089204|ref|ZP_08338106.1| hypothetical protein HMPREF1025_01689 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330405756|gb|EGG85285.1| hypothetical protein HMPREF1025_01689 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 249

 Score = 87.5 bits (215), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 83/193 (43%), Gaps = 6/193 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRR 54
           ++ L +K+  +F   F NA+  +  +++AG  V +A+       +        +R EFR+
Sbjct: 57  LRDLCRKKEKEFRVQFSNAIQAMGAALKAGYSVENAIREAEKDLAPMYEENVRIRKEFRK 116

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           ++    + +     + +    M  ++   F TV S     GG+    + N  +I+  + +
Sbjct: 117 MVHQLDMKMPAVSVMEQFSERMKQEDTEDFVTVFSSAKMSGGDSISIIRNAVKIISGKID 176

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
            + ++Q +    K    I+ ++PF +   +  T   +++VL  +  G   + +     + 
Sbjct: 177 TEQEIQTMFASKKLEFEIMCAVPFFIILYMKLTFGEFLSVLYENATGRCFMTICLIVYIA 236

Query: 175 GIMVMRLMINFDV 187
                R +I+ +V
Sbjct: 237 AYSFGRKIIHIEV 249


>gi|153815434|ref|ZP_01968102.1| hypothetical protein RUMTOR_01669 [Ruminococcus torques ATCC 27756]
 gi|145847293|gb|EDK24211.1| hypothetical protein RUMTOR_01669 [Ruminococcus torques ATCC 27756]
          Length = 205

 Score = 87.5 bits (215), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 83/193 (43%), Gaps = 6/193 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRR 54
           ++ L +K+  +F   F NA+  +  +++AG  V +A+       +        +R EFR+
Sbjct: 13  LRDLCRKKEKEFRVQFSNAIQAMGAALKAGYSVENAIREAEKDLAPMYEENVRIRKEFRK 72

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           ++    + +     + +    M  ++   F TV S     GG+    + N  +I+  + +
Sbjct: 73  MVHQLDMKMPAVSVMEQFSERMKQEDTEDFVTVFSSAKMSGGDSISIIRNAVKIISGKID 132

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
            + ++Q +    K    I+ ++PF +   +  T   +++VL  +  G   + +     + 
Sbjct: 133 TEQEIQTMFASKKLEFEIMCAVPFFIILYMKLTFGEFLSVLYENAAGRCFMTICLIVYIA 192

Query: 175 GIMVMRLMINFDV 187
                R +I+ +V
Sbjct: 193 AYSFGRKIIHIEV 205


>gi|220927957|ref|YP_002504866.1| Flp pilus assembly protein TadB-like protein [Clostridium
           cellulolyticum H10]
 gi|219998285|gb|ACL74886.1| Flp pilus assembly protein TadB-like protein [Clostridium
           cellulolyticum H10]
          Length = 247

 Score = 87.5 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 85/193 (44%), Gaps = 7/193 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA-------VIVGQSSDPVRSEFRR 54
           K +I+KR  +    F + L  +  S+ AG P+  A         V+       +  E + 
Sbjct: 55  KQIIEKRKNELNLQFKDLLISLSSSLSAGKPLEKAFVGALSDLYVLYPSDDAYIVRETKI 114

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           +I    L +S+ E++S       + ++  FS VI +  + GGNL +A+ N SRI+ ++  
Sbjct: 115 IINKLSLNVSIEEAVSDFAERSDIDDIKNFSDVIIICKRTGGNLVDAIKNSSRIISEKIE 174

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           M  +++ L    K    ++  +P  +  ++  T+  Y+N +     G +   +    +  
Sbjct: 175 MAQEIETLLSSRKLEQKVLNIMPIAMIFILSTTATEYINPVFTTVTGRIAATLCLILLTA 234

Query: 175 GIMVMRLMINFDV 187
              + + +IN  +
Sbjct: 235 AYFISKRIINIKM 247


>gi|72162675|ref|YP_290332.1| integral membrane protein [Thermobifida fusca YX]
 gi|71916407|gb|AAZ56309.1| putative integral membrane protein [Thermobifida fusca YX]
          Length = 273

 Score = 87.5 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 60/140 (42%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            +KR  +     P+ LD++  +V AGL    A+A +       + SEF+  +    LG S
Sbjct: 117 KRKRQEEIQKQLPDFLDVLAVTVSAGLSFRQALARVADAMPGVLASEFQLALRQMELGTS 176

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++ + +      + +  F T +    +LG  LS+ L  LS  +R       + +A  +
Sbjct: 177 RRDAFAALRERNSNEALGRFITALQQAEELGAPLSQTLHALSTDMRREDAQFLRRKAQHL 236

Query: 125 EAKASAWIIGSLPFCVSTLV 144
             + +A    ++   +  ++
Sbjct: 237 NPRVTAVTAATMLPGLLLII 256


>gi|254483273|ref|ZP_05096505.1| Bacterial type II secretion system protein F domain [marine gamma
           proteobacterium HTCC2148]
 gi|214036496|gb|EEB77171.1| Bacterial type II secretion system protein F domain [marine gamma
           proteobacterium HTCC2148]
          Length = 283

 Score = 87.5 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 81/174 (46%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
               + +  +  S+++G+ +  A + +V     P+  EF  + E    G  +  ++    
Sbjct: 110 AQTADVMTALSASIKSGMTIEQAFSEMVDNMYPPISEEFALIRERIDAGQPVIAAVKSAD 169

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
             + +  +S     I +  + GG L+  +  L+   R+ + ++ +V+  +   + SA I+
Sbjct: 170 ERLQVPRLSLIFQTICISLERGGRLASLMDRLAESTREIERVEERVRTETAGLRLSARIM 229

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
             +PF +  L+Y   P  + +L ++  G+++L +A A  +    +M+ +I  D+
Sbjct: 230 FLMPFFICGLLYLIEPDQVMLLFDNLVGNIVLVIAIAMDISAYFIMKKLIELDI 283


>gi|331003046|ref|ZP_08326558.1| hypothetical protein HMPREF0491_01420 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330413090|gb|EGG92465.1| hypothetical protein HMPREF0491_01420 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 227

 Score = 87.5 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 85/192 (44%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55
           K LI  +  K + +F  A+ II   + AG  + +++   + +        + +  EF  +
Sbjct: 36  KELINVKKRKLVLEFKEAIMIISSLLSAGYSLENSIKEALVELRLLYSKDNLIIKEFEYI 95

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
            +  ++ +S+  +   +      +++  F+ V+ +  + GG L   +++   ++ D+  +
Sbjct: 96  NQLIYMNISVERAFDDLAYRSHSEDIRSFAKVLRIAKRSGGELVSIISHTVNVIADKVRI 155

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K ++  ++   +    ++   P  +   +  +SPG+ N++     G + +       L  
Sbjct: 156 KEEIITMTAAKRFEQSVMNVFPLFIVLYIDISSPGFFNIMYTTIIGRICMSFGLIMYLFA 215

Query: 176 IMVMRLMINFDV 187
           I + + ++N +V
Sbjct: 216 IYISKGLLNIEV 227


>gi|94312589|ref|YP_585798.1| type II secretion system protein, pilus assembly, transmembrane
           part [Cupriavidus metallidurans CH34]
 gi|93356441|gb|ABF10529.1| type II secretion system protein, pilus assembly, transmembrane
           part [Cupriavidus metallidurans CH34]
          Length = 309

 Score = 87.1 bits (214), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 87/181 (48%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            I++   K L   P  LD +VR +  G  V  A    V  +  P+R    +VI  Q  G 
Sbjct: 127 RIRRIKEKMLRQLPGFLDGVVRLMTIGSSVPAAFQNSVANTEPPLRQCLVQVIHLQRAGK 186

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L +++ +M R   L E+   S+V+ +  + GG     +   +  +RDR+  + ++ ALS
Sbjct: 187 ELDQAVLQMGRAYDLDELVIVSSVLRLSQRYGGRADVVMERTATFMRDREEAQRELMALS 246

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAW++G LP  V   ++  + GY+ ++  DP G  +L  AA   + G  ++  + 
Sbjct: 247 AETRMSAWVLGLLPLIVGGGMFVFNAGYILLMWRDPGGRAMLLTAAGLEVAGAFLLYRLA 306

Query: 184 N 184
            
Sbjct: 307 R 307


>gi|116694143|ref|YP_728354.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
 gi|113528642|emb|CAJ94989.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
          Length = 308

 Score = 87.1 bits (214), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 89/182 (48%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           + +++   K L   P  LD +VR +  G  V  A    +  +  P+R    + +  Q  G
Sbjct: 125 NRVRRLHKKLLSQLPGFLDGVVRLMTIGSSVPAAFQNSIANTEAPLRQCLVQAVHLQRAG 184

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             L +++ ++ R   ++E+   ++V+ +  + GG     +   +  +RDR+  + ++ AL
Sbjct: 185 KELDQAVLQVGRVYKVEELVLVASVLRLSVRYGGRADVVMERTAAFMRDREQAQRELMAL 244

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAWI+G LP  V+  ++  + GY+ ++  DP G  +L  A A  + G  ++  +
Sbjct: 245 SAETRLSAWILGLLPLVVAGGLFMLNAGYILMMWKDPTGKTMLLSALALEIAGAFMLYRL 304

Query: 183 IN 184
             
Sbjct: 305 AK 306


>gi|49085940|gb|AAT51316.1| PA4301 [synthetic construct]
          Length = 295

 Score = 87.1 bits (214), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 94/184 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L ++R  + +   P  LD +VRS+ AG  + DA+   V  + +P+R  F        
Sbjct: 109 LGMLYQRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVENAEEPLRDIFTLARNHVL 168

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L E++  +     ++E+   +  +SV  + GGN S+ L ++ +++ +R+ +  ++ 
Sbjct: 169 LGIHLPEALQEVAELYEVEELRILALGVSVNHRYGGNTSDLLDSIVKLIHEREKLSRQLH 228

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + SA+++  +P  +   +  ++PGY+  +  D  G  LL  +    L+G   + 
Sbjct: 229 AMTGETRISAYVLAGVPSALGGYILASNPGYLLNMWADGTGRFLLLASLGLQLLGCYALW 288

Query: 181 LMIN 184
            M+ 
Sbjct: 289 RMLK 292


>gi|159043673|ref|YP_001532467.1| type II secretion system protein [Dinoroseobacter shibae DFL 12]
 gi|157911433|gb|ABV92866.1| type II secretion system protein [Dinoroseobacter shibae DFL 12]
          Length = 331

 Score = 87.1 bits (214), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 69/159 (43%), Gaps = 4/159 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +   I KR  +  + FP++LD+++  V AG  +  A+  +  +       +  EF  V  
Sbjct: 167 VDKRIDKRQEEITNGFPDSLDLMLVCVEAGQGLDQAIIRVAHEIRAGYPDLADEFEMVAF 226

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G      +  M     + +V+ F TV+      G ++++AL   +  +RD++ M+A
Sbjct: 227 EIKAGKDKITVLKDMAERCGVGDVTSFVTVLIQSQSFGTSIADALRVYAGEMRDKRVMRA 286

Query: 118 KVQALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A  +  K     ++ ++P  +  L+  +       L
Sbjct: 287 EEKANVLPTKLTLGTMMFTVPPLLIILIGPSMWSIYESL 325


>gi|329905443|ref|ZP_08274133.1| type II secretion system protein [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547600|gb|EGF32398.1| type II secretion system protein [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 161

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 89/161 (55%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           +RAG+ ++ A   +V +S  P+  EF  ++  Q LG++L +S++ + R +P    +   +
Sbjct: 1   MRAGVGLNAATQQLVAESQPPLAQEFSLMLREQRLGVTLEQSLTNLSRRIPTTTTTLVVS 60

Query: 87  VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
            + + ++ GG L+EAL   S  +R R  M+ K+ AL+ + K  AW++G LP  +  ++  
Sbjct: 61  AMRIAAETGGGLAEALERTSHTVRSRLQMEGKIGALTAQGKLQAWVVGMLPLSLMAVLNK 120

Query: 147 TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
             P  M+ L +   G   L V A   ++G++++R ++  DV
Sbjct: 121 MEPESMSYLWHSQVGWATLAVIAFLEIMGVVLIRKIVAIDV 161


>gi|89901674|ref|YP_524145.1| type II secretion system protein [Rhodoferax ferrireducens T118]
 gi|89346411|gb|ABD70614.1| type II secretion system protein [Rhodoferax ferrireducens T118]
          Length = 405

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 60/182 (32%), Gaps = 10/182 (5%)

Query: 3   HLIKKRTAKFL----DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIE 57
            + K+R          D       +   ++AG+P+  A  ++   + +P V      +  
Sbjct: 51  KIKKRRMRAGKSIKPKDLAIFTRQLATMMKAGVPLLQAFDIVGRGNPNPSVTKLLNDIRT 110

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G SLS +  +                +    +  G L + L  L+  +   + +K+
Sbjct: 111 DVETGTSLSVAFRKFPL-----YFDNLYCNLIEAGESAGILDQLLDRLAVYMEKTEAIKS 165

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           K+++  M   +   +   +   +   V        +    D     L+ +A + + +   
Sbjct: 166 KIKSALMYPISVLIVAFVVTAVIMIFVVPAFKEVFSNFGADLPAPTLVVIAISEIFVKYW 225

Query: 178 VM 179
            +
Sbjct: 226 WL 227


>gi|20094143|ref|NP_613990.1| hypothetical protein MK0706 [Methanopyrus kandleri AV19]
 gi|19887150|gb|AAM01920.1| Predicted membrane protein [Methanopyrus kandleri AV19]
          Length = 362

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 69/180 (38%), Gaps = 2/180 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           LI++R  +     P A+  +   V AGL + +++  I       +  EF RVI   + G 
Sbjct: 177 LIRRREGEIARQLPYAIRQMATEVSAGLSLIESMKSISESDYGALSEEFERVIREINSGT 236

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            ++ ++ RM     +  +      I+   + G N+++ L  L+  +      + +     
Sbjct: 237 PINVALQRMANRWNVDGLRTMVRFITQAMESGANIAKTLMTLADEIAHELRQRYREYGHK 296

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMN--VLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++A A  +I+ +L       V       ++   L+  P    ++      M    + +  
Sbjct: 297 LQALAFPYIMLTLVIPTLVTVAMLLAANLSGAFLVPPPLFGPMIAGMVGVMAGIFLFIFK 356


>gi|284048519|ref|YP_003398858.1| Type II secretion system F domain protein [Acidaminococcus
           fermentans DSM 20731]
 gi|283952740|gb|ADB47543.1| Type II secretion system F domain protein [Acidaminococcus
           fermentans DSM 20731]
          Length = 309

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 74/146 (50%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + H+I+ R  K +   P+ LD++  SV+AGL +  A+  +V +   P+  EFRR++    
Sbjct: 153 LNHIIRNRQTKIIRQLPDVLDLLSISVQAGLSLDGAMRKVVERMEGPLIDEFRRMLRDVR 212

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G++   S+  M R   +Q+V  F   +    +LG ++S+ L   +  +RD +  +A+ Q
Sbjct: 213 MGMTRRRSMQLMARRCDVQDVYLFVMSVVQSERLGASMSDTLVIQADNMRDLRRQRARTQ 272

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146
           A+    K    ++  +   +  +V  
Sbjct: 273 AMKAPVKMIFPLVFCIFPAIFVVVLL 298


>gi|283457756|ref|YP_003362343.1| Flp pilus assembly protein TadB [Rothia mucilaginosa DY-18]
 gi|283133758|dbj|BAI64523.1| Flp pilus assembly protein TadB [Rothia mucilaginosa DY-18]
          Length = 315

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 73/183 (39%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + H  +   A+    +P+A+D +  ++RAGL + +A+  +  +  + +R  F        
Sbjct: 124 VNHRARAADARIWQLWPDAVDHLRSAIRAGLSLPEALIQLSYRGPEELRDAFAHFSRDYR 183

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVI-SVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                  S++R+  Y+           +   +   G +L + L  LS  LRD    ++++
Sbjct: 184 ASGEFVPSLNRLKEYLSDPVADTIIEALKIAREVGGSDLGKLLGTLSDFLRDNARTRSEL 243

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            A       +A +    P+ V  L+         ++ N   G ML+   AA  L    +M
Sbjct: 244 LARQSWTVNAARLSCVAPWFVLCLMAT--QPAARMVYNSFAGAMLMIAGAAISLAAYRLM 301

Query: 180 RLM 182
             +
Sbjct: 302 LRI 304


>gi|15599497|ref|NP_252991.1| TadB [Pseudomonas aeruginosa PAO1]
 gi|107100115|ref|ZP_01364033.1| hypothetical protein PaerPA_01001136 [Pseudomonas aeruginosa PACS2]
 gi|218893393|ref|YP_002442262.1| TadB [Pseudomonas aeruginosa LESB58]
 gi|254244888|ref|ZP_04938210.1| hypothetical protein PA2G_05761 [Pseudomonas aeruginosa 2192]
 gi|9950523|gb|AAG07689.1|AE004846_6 TadB [Pseudomonas aeruginosa PAO1]
 gi|126198266|gb|EAZ62329.1| hypothetical protein PA2G_05761 [Pseudomonas aeruginosa 2192]
 gi|218773621|emb|CAW29435.1| TadB [Pseudomonas aeruginosa LESB58]
          Length = 294

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 94/184 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L ++R  + +   P  LD +VRS+ AG  + DA+   V  + +P+R  F        
Sbjct: 109 LGMLYQRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVENAEEPLRDIFTLARNHVL 168

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L E++  +     ++E+   +  +SV  + GGN S+ L ++ +++ +R+ +  ++ 
Sbjct: 169 LGIHLPEALQEVAELYEVEELRILALGVSVNHRYGGNTSDLLDSIVKLIHEREKLSRQLH 228

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + SA+++  +P  +   +  ++PGY+  +  D  G  LL  +    L+G   + 
Sbjct: 229 AMTGETRISAYVLAGVPSALGGYILASNPGYLLNMWADGTGRFLLLASLGLQLLGCYALW 288

Query: 181 LMIN 184
            M+ 
Sbjct: 289 RMLK 292


>gi|312883758|ref|ZP_07743477.1| Flp pilus assembly protein TadB, putative [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309368507|gb|EFP96040.1| Flp pilus assembly protein TadB, putative [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 302

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 88/182 (48%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
              K++  +F       L +I R+V AGL V  A++ +       +  EF R+ +   LG
Sbjct: 116 MRKKQQIEEFEQSMVQVLGLISRAVSAGLSVPQAISQVTESQGGLMSREFSRIEDQLALG 175

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             +  +++     +P +   +F+  + +    GG L E L +LSR L + + M+ KV++L
Sbjct: 176 HGMRYALNEACIRLPYKAFRYFTIALLLNQSNGGQLREILHSLSRTLHENRAMQKKVKSL 235

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E + +A  +  LP  + TLV + +P    +LI    G  +L   A  +L+G + + LM
Sbjct: 236 TSEPRTAARFLSLLPLGLLTLVAWINPSLFLLLIETEPGQSVLIYCAVSILVGAITLHLM 295

Query: 183 IN 184
             
Sbjct: 296 TK 297


>gi|160878194|ref|YP_001557162.1| Flp pilus assembly protein TadB-like protein [Clostridium
           phytofermentans ISDg]
 gi|160426860|gb|ABX40423.1| Flp pilus assembly protein TadB-like protein [Clostridium
           phytofermentans ISDg]
          Length = 247

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 77/192 (40%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55
           + + + R  K   +F + +  +  ++ AG  V +A    +            +  EF+ +
Sbjct: 56  RKMAEDRKKKLNTEFLDGIHSLSVALEAGYSVENAFKAAIKDLGLMYSKEALIMKEFQCI 115

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           +   +  + +  +I        L++V  FS V     + GG+L   +    + + ++  +
Sbjct: 116 VSQINHNIPIENAIGEFANRSKLEDVECFSEVFKTAKRTGGDLVAIIKMTGKTIGEKVEV 175

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
             +++ L    K  A I+  +PF +   +   SP ++  L ++  G + + +     L  
Sbjct: 176 MREIETLITAKKMEANIMKLVPFGILGYMLLGSPQFLKPLYHNLFGIIFMTILLGIYLFL 235

Query: 176 IMVMRLMINFDV 187
             ++  +I   V
Sbjct: 236 TKLVDKIIAIRV 247


>gi|325264273|ref|ZP_08131004.1| putative bacterial type II secretion system protein F domain
           protein [Clostridium sp. D5]
 gi|324030344|gb|EGB91628.1| putative bacterial type II secretion system protein F domain
           protein [Clostridium sp. D5]
          Length = 224

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 75/188 (39%), Gaps = 6/188 (3%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRVIETQ 59
           +++  +F + F  ++  +  ++  G  V +AV                +R EF R+I   
Sbjct: 37  REKEQEFREQFRVSIQTMASALNIGYSVENAVRETARDLKPLFRRDSRIRKEFERMIHQL 96

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            +   + + +S +   +  ++V  F  V S   + GG+    L +  R + D+   + ++
Sbjct: 97  DINQPVEQVMSELADRVSQEDVENFVIVFSAAKRTGGDSISILRSAVRDISDKIEAEKEI 156

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           Q L    K    ++  +PF +   +    P +M VL  +  G  L+ V          + 
Sbjct: 157 QTLLASKKLEFKVMCIIPFGILFYMRLAFPEFMQVLYGNLAGAALMTVCLGIYAAAYRMG 216

Query: 180 RLMINFDV 187
             ++  +V
Sbjct: 217 EKLVEIEV 224


>gi|332284567|ref|YP_004416478.1| type II secretion system protein [Pusillimonas sp. T7-7]
 gi|330428520|gb|AEC19854.1| type II secretion system protein [Pusillimonas sp. T7-7]
          Length = 282

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 99/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  + K R  +F +  P+ L  +  ++RAG  +  A+  IV QS  P+  EF  ++  Q 
Sbjct: 96  IGRIRKLRLQRFDEQLPDLLQALAGALRAGAGLQSALKHIVAQSPAPLSQEFGLMLRQQR 155

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+   ++++ + R MP +      + +++ +Q GGNL+E L +++  LR R  + ++VQ
Sbjct: 156 MGIGFEQALADLYRRMPFEGTGLVVSALTIAAQSGGNLAETLESIAATLRARLRLLSRVQ 215

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ + +  AWI+  LP  ++ ++++  P  M  L   P G  ++       ++GI  +R
Sbjct: 216 ALTSQGRLQAWIMAGLPPVLAIVLHYLDPDSMRALWETPAGWSVVAAIVTMEVLGIWFIR 275

Query: 181 LMINFDV 187
            ++   +
Sbjct: 276 RIVAITI 282


>gi|260427288|ref|ZP_05781267.1| type II/IV secretion system protein, TadC subfamily [Citreicella
           sp. SE45]
 gi|260421780|gb|EEX15031.1| type II/IV secretion system protein, TadC subfamily [Citreicella
           sp. SE45]
          Length = 324

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 71/148 (47%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +   +++R  +  + FP+ALD+++  V AG  +  ++  +  +   S   +  EF  +  
Sbjct: 161 ITKRVEERKKQIEEGFPDALDMMLVCVEAGQSLDQSIVRVSKELRASYPALADEFEIISH 220

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G   S  ++ M     +Q+VS F TV++  +  G ++++AL   +  +RD++ M+A
Sbjct: 221 EMRAGKDKSNVLNDMGERCGVQDVSSFVTVLNQAANFGTSIADALRIYASEMRDKRVMRA 280

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A  +  K +   +      +  ++ 
Sbjct: 281 EEKANKLPTKMTLTTMMLTVPPLLIILV 308


>gi|269126091|ref|YP_003299461.1| type II secretion system protein [Thermomonospora curvata DSM
           43183]
 gi|268311049|gb|ACY97423.1| type II secretion system protein [Thermomonospora curvata DSM
           43183]
          Length = 307

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 71/149 (47%), Gaps = 2/149 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  +     P+ LD++V SV AGL    A+  +   +S P+  E  RV++   +G S +
Sbjct: 155 RRQEELKRSLPDTLDLLVVSVEAGLGFDAALTRVAQHTSGPLAEELARVLQEIRIGKSRT 214

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++  M   + ++EV  F   +   S+LG ++   L   +R  R ++  +A+  A  +  
Sbjct: 215 EALRSMGERVAVEEVRTFIAALVQASELGMSIGVVLREQAREARLKRRQRAEEMAQKVPV 274

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           K    ++  +   +   +    PG ++++
Sbjct: 275 KVMFPVVLCILPALI--ITVVGPGVLSIM 301


>gi|254466278|ref|ZP_05079689.1| type II/IV secretion system protein, TadC subfamily
           [Rhodobacterales bacterium Y4I]
 gi|206687186|gb|EDZ47668.1| type II/IV secretion system protein, TadC subfamily
           [Rhodobacterales bacterium Y4I]
          Length = 326

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 76/158 (48%), Gaps = 4/158 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +   I++R  K  + FP+ALD+++  V AG  +  A+  +  +   S   +  EF  V  
Sbjct: 164 ITRRIEERKQKITEGFPDALDMMLVCVEAGQSLDQAIVRVAKELHASYPDLAEEFEVVAY 223

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G      +  M     +Q++S F TV+   +  G ++++AL   +  +RD++ M+A
Sbjct: 224 EMKAGKEKDRVLRDMGTRCGVQDISSFVTVMIQSASFGTSIADALRVYAGEMRDKRVMRA 283

Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154
           +  A  +  K + A +  ++P  +  LV  +  G MN+
Sbjct: 284 EEAANKLPVKMTLATMGLTVPPLLIILVGPSIQGIMNM 321


>gi|119717342|ref|YP_924307.1| type II secretion system protein [Nocardioides sp. JS614]
 gi|119538003|gb|ABL82620.1| type II secretion system protein [Nocardioides sp. JS614]
          Length = 304

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 1/149 (0%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R+ +     P+A+D++  SV AGL    AV  +   +  P+  E  RV+    LG S S 
Sbjct: 156 RSERIRRALPDAIDLLTISVEAGLGFDAAVQQVAQHTEGPLADELSRVLREMQLGQSRSA 215

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++  +     + E+  F   +     LG  +++ L   SR +R ++   A+ +A  +  K
Sbjct: 216 ALRSLSARTTVPELRGFVGAMVQADALGIPIAQVLRVQSREIRVKRRQHAEERAQQVPVK 275

Query: 128 AS-AWIIGSLPFCVSTLVYFTSPGYMNVL 155
            +   I   LP     ++       M+  
Sbjct: 276 ITVPLIFCILPCLFVVVLGPAVLNIMDTF 304


>gi|91788419|ref|YP_549371.1| type II secretion system protein [Polaromonas sp. JS666]
 gi|91697644|gb|ABE44473.1| type II secretion system protein [Polaromonas sp. JS666]
          Length = 314

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 71/165 (43%), Gaps = 4/165 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +K+LI +R  +  + FP+ALD++   V AGL +  A+A +  +    S  +  E + V  
Sbjct: 148 LKNLISRRQREIFESFPDALDLMTVCVEAGLAMDAALARVASEIGLKSAVLSEELQLVTL 207

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S  +++  +     + +V     ++    + G +++++L   S  LR ++  +A
Sbjct: 208 ELRAGSSKEKALRNLALRTGVDDVDALVAMLIQSERFGTSIADSLRVQSDQLRTKRRQRA 267

Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           + QA  +        I    P  +  L+         VL+    G
Sbjct: 268 EEQAAKIALKLLFPLIFFIFPSLLVVLMGPAFIQIYRVLLPTMAG 312


>gi|163857688|ref|YP_001631986.1| putative Flp pilus assembly protein [Bordetella petrii DSM 12804]
 gi|163261416|emb|CAP43718.1| putative Flp pilus assembly protein [Bordetella petrii]
          Length = 307

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 75/181 (41%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
              +R  +  D  P  LD +VR +  G  ++ A       +S+P+R    +         
Sbjct: 125 RADRRRGRMFDQLPEMLDTMVRLITIGNSMAAAFQAASANTSEPLREVVEKAAHLSRSTQ 184

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L  +++ + R    +E+   + V+ V  + GG     L  ++  +RD    + ++ A S
Sbjct: 185 ELDAALANVARQYGFEELRLLAAVVRVAQKYGGRSDVVLERIAAFMRDVAQARGELVAAS 244

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAW++  +P  ++  +  T+      + +DP G  +L  A    L G   +  M 
Sbjct: 245 AEIRLSAWVLALMPLGIACYIMLTNNAMFMDMWDDPLGFKMLMAALGLQLAGSYWLYRMT 304

Query: 184 N 184
            
Sbjct: 305 K 305


>gi|116052335|ref|YP_792646.1| hypothetical protein PA14_55880 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|254239029|ref|ZP_04932352.1| hypothetical protein PACG_05206 [Pseudomonas aeruginosa C3719]
 gi|296391000|ref|ZP_06880475.1| hypothetical protein PaerPAb_22729 [Pseudomonas aeruginosa PAb1]
 gi|313106820|ref|ZP_07793032.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016]
 gi|115587556|gb|ABJ13571.1| putative pilus assembly protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126170960|gb|EAZ56471.1| hypothetical protein PACG_05206 [Pseudomonas aeruginosa C3719]
 gi|310879534|gb|EFQ38128.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016]
          Length = 294

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 94/184 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L ++R  + +   P  LD +VRS+ AG  + DA+   V  + +P+R  F        
Sbjct: 109 LGMLYQRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVENAEEPLRDIFTLARNHVL 168

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L E++  +     ++E+   +  +SV  + GGN S+ L ++ +++ +R+ +  ++ 
Sbjct: 169 LGIHLPEALQEVAELYEVEELRILALGVSVNHRYGGNTSDLLDSIVKLIHEREKLSRQLH 228

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + SA+++  +P  +   +  ++PGY+  +  D  G  LL  +    L+G   + 
Sbjct: 229 AMTGETRISAYVLAGVPSALGGYILASNPGYLLNMWADGTGRFLLLASLGLQLLGCYALW 288

Query: 181 LMIN 184
            M+ 
Sbjct: 289 RMLK 292


>gi|85707698|ref|ZP_01038764.1| hypothetical protein NAP1_00645 [Erythrobacter sp. NAP1]
 gi|85689232|gb|EAQ29235.1| hypothetical protein NAP1_00645 [Erythrobacter sp. NAP1]
          Length = 333

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 61/148 (41%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +K+   KRT +     P+ALD++V    AGL V  A   +  +   +   +  EF     
Sbjct: 171 LKNKADKRTKEIQKGLPDALDLLVICAEAGLTVDAAFNRVAKELGRAYPELGDEFALTAI 230

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     + + +   + L+ V    T +    + G  L+ AL  LS   R+ + M+A
Sbjct: 231 ELSFLNERKMAFNNLAYRVDLEAVKGVVTTMIQTERYGTPLASALRVLSAEFRNERMMRA 290

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A  + A  +  +I  +   +  ++ 
Sbjct: 291 EEKAARLPAIMTVPLILFILPVLFIVIL 318


>gi|87312288|ref|ZP_01094386.1| probable secretion system protein TadC [Blastopirellula marina DSM
           3645]
 gi|87284992|gb|EAQ76928.1| probable secretion system protein TadC [Blastopirellula marina DSM
           3645]
          Length = 309

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 63/148 (42%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           + +L KKR  +     P+ALD++V  V AGL +  A+  +  +       +  EF     
Sbjct: 143 LWYLGKKRKEQIFRGLPDALDLMVVCVEAGLGLDQAMRRVSEEMKKTYRVIAEEFGLCNF 202

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G   S+ +  +     + ++   + ++    + G ++S+AL   S  +R R+   A
Sbjct: 203 QLQVGRQRSDVLHELGNRTGVDDLRSLAAILIQADKFGSSISQALRVQSDSMRTRRRQIA 262

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A     K    ++  +   +  ++ 
Sbjct: 263 EEKAAKTAVKMIFPLVFFIFPGIFVVLV 290


>gi|154505644|ref|ZP_02042382.1| hypothetical protein RUMGNA_03183 [Ruminococcus gnavus ATCC 29149]
 gi|153794083|gb|EDN76503.1| hypothetical protein RUMGNA_03183 [Ruminococcus gnavus ATCC 29149]
          Length = 232

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 77/188 (40%), Gaps = 6/188 (3%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRVIETQ 59
           K++  +F + F  ++  +   ++ G  V +A+     +          +  E+  ++   
Sbjct: 45  KQKKEEFREQFRESIQTLSAILKVGYSVENAIRETWKEICPIYKKKTRIIKEYETMVHQL 104

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            L ++  E + +    +  ++V  F TV     +LGG+    + + +  + ++  ++ ++
Sbjct: 105 DLNMTAEEVMKQFADRVKEEDVENFVTVFGAAKRLGGDSIAIIRHAADAIGEKMEVEREI 164

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           Q +    K    I+  +PF +   +    P +M VL  +  G + + +     L    + 
Sbjct: 165 QVMLTSKKLEFKIMCVIPFVIILYMRSAFPEFMAVLYGNLAGTLFMTICLMVYLTAYQLG 224

Query: 180 RLMINFDV 187
           + M   +V
Sbjct: 225 KKMTQIEV 232


>gi|184200571|ref|YP_001854778.1| hypothetical protein KRH_09250 [Kocuria rhizophila DC2201]
 gi|183580801|dbj|BAG29272.1| hypothetical membrane protein [Kocuria rhizophila DC2201]
          Length = 285

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 81/183 (44%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++    +RTA   + +P+ +D +  ++RAG+ + +A+  +  +  +P+R  F R      
Sbjct: 94  VRRRAHRRTAVLREVWPDVVDHLRSAIRAGMGLPEALMQLQYRGPEPLRPAFARFAADYR 153

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKV 119
               L  S++ + + +           + V  +  G +L + L  LS  LR+ +  ++++
Sbjct: 154 ASGQLHGSLTMLKQRLADPVADNIVEALRVTREVGGTDLGKLLGTLSEFLRENERTRSEL 213

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +A       +A +  + P+ +  L+  T P  +    N P G ++L    A  +    +M
Sbjct: 214 EARQSWTVNAARLSVAAPWLILGLM-ATQPAAVQA-YNTPAGAVVLLGGLAVSVAAYQLM 271

Query: 180 RLM 182
             +
Sbjct: 272 LRL 274


>gi|126729093|ref|ZP_01744907.1| type II/IV secretion system protein, TadC subfamily [Sagittula
           stellata E-37]
 gi|126710083|gb|EBA09135.1| type II/IV secretion system protein, TadC subfamily [Sagittula
           stellata E-37]
          Length = 324

 Score = 85.6 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 68/148 (45%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +   ++KR  +    FP+ALD+++  V AG  +  ++  +  +   S   +  EF  +  
Sbjct: 161 ITKRMEKRKEEIQQGFPDALDMMLVCVEAGQSMEQSIIRVAKELRASYPALADEFEIISH 220

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G   S+ ++ M      Q+VS F TV++     G ++S+AL   +  +RD++ M+A
Sbjct: 221 EMKAGKDRSQVLNDMSERCGSQDVSSFVTVLNQAQTFGTSISDALRVYAGEMRDKRVMRA 280

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           +  A  +  K +   +      +  ++ 
Sbjct: 281 EEAANKLPTKMTLTTMMLTVPPLLIILV 308


>gi|291521739|emb|CBK80032.1| Flp pilus assembly protein TadB [Coprococcus catus GD/7]
          Length = 240

 Score = 85.6 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 74/192 (38%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA------VIVGQSSDPVRSEFRRV 55
           +   K R      +F +A  ++  S  AG  +  A+            S   +  EF R+
Sbjct: 49  RMREKSRKQMLWHEFKDAAAMLYSSTAAGGTLEKALRDTCCDMKTSDSSYQVLLPEFERI 108

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                   SL   +         +++++F  V++V  + GG+LS  + + +  +  R  +
Sbjct: 109 CMHLDQNRSLESVLEDFAVRSEDEDIAYFVRVLTVARKSGGSLSSIIRHTADTMNLRMEI 168

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
            ++++ +    +    I+  +P  +   +   S  YMN+L     G +++  A       
Sbjct: 169 NSEIETILAGKRGEWRIMLIVPPGILCYMNMCSSEYMNILYTGLTGRLVMTAALMVYAAA 228

Query: 176 IMVMRLMINFDV 187
           +     +++  V
Sbjct: 229 LWTGHKILDIHV 240


>gi|239817190|ref|YP_002946100.1| type II secretion system protein [Variovorax paradoxus S110]
 gi|239803767|gb|ACS20834.1| type II secretion system protein [Variovorax paradoxus S110]
          Length = 409

 Score = 85.6 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 58/185 (31%), Gaps = 11/185 (5%)

Query: 1   MKHLIKKRT----AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRR 54
           +   IKKR           D       +   ++AG+P+  +  ++    ++  V      
Sbjct: 52  LASKIKKRRMRSGKSIKPKDIAIFTRQLATMMKAGVPLLQSFDIVGRGNANPSVAKLLND 111

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           +      G SLS +  +  +             +    +  G L + L  L+  +   + 
Sbjct: 112 IRSDVETGTSLSSAFRKFPK-----YFDNLYCNLVEAGEAAGILEDLLDRLATYMEKTEA 166

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +K+K+++  M   +   +   +   +   V             D     L  +A +   +
Sbjct: 167 IKSKIKSALMYPTSVVVVAFVVVAIIMIFVIPAFKQVFTSFGADLPAPTLFVMAMSEFFV 226

Query: 175 GIMVM 179
               +
Sbjct: 227 SYWWL 231



 Score = 35.9 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 43/131 (32%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+ +A+  + G S + V      ++ +    G SL+ +++ +     
Sbjct: 279 WTRTLATMFAAGVPLVEALDSVGGASGNTVYGDATAKIQQEVSTGTSLTTAMTNV----- 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     ++   +  G++   L   +       +      +  ME     ++   + 
Sbjct: 334 -NLFPSMVIQMTAIGEESGSIDHMLGKAADFYESEVDDMVAGLSSLMEPIIIVFLGVIIG 392

Query: 138 FCVSTLVYFTS 148
             V ++     
Sbjct: 393 GIVVSMYLPIF 403


>gi|152986618|ref|YP_001350204.1| hypothetical protein PSPA7_4868 [Pseudomonas aeruginosa PA7]
 gi|150961776|gb|ABR83801.1| hypothetical protein PSPA7_4868 [Pseudomonas aeruginosa PA7]
          Length = 293

 Score = 85.6 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 91/179 (50%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R  + +   P  LD +VRS+ AG  + DA+   V  + DP+R  F        LG+ L
Sbjct: 113 RRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVEDAEDPLRDIFGLARNHVLLGIHL 172

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E++  +     ++E+   +  +SV  + GGN ++ L  + R++ +R+ +  ++ A++ E
Sbjct: 173 PEALQEVAELYEVEELRILALGVSVNHRYGGNTTDLLDGIVRLIHEREKLSRQLHAMTGE 232

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            + SA+++  +P  +   +  ++PGY+  +  D  G  LL  +    L+G   +  M+ 
Sbjct: 233 TRISAYVLAGVPSALGGYILASNPGYLLNMWADGSGRFLLLASLGLQLLGCYALWRMLK 291


>gi|291615154|ref|YP_003525311.1| type II secretion system F domain protein [Sideroxydans
           lithotrophicus ES-1]
 gi|291585266|gb|ADE12924.1| Type II secretion system F domain protein [Sideroxydans
           lithotrophicus ES-1]
          Length = 405

 Score = 85.6 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 50/172 (29%), Gaps = 6/172 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLS 66
           R      D       +   +++G+P+  A  ++     +  V      +      G SL 
Sbjct: 59  RGKVTEKDITLFTRQLATMLKSGVPLLQAFDIVGKGHDNPAVSRLLFDIKTDVETGSSLE 118

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S  +                +    +  G L   L  L+        +K+K+++     
Sbjct: 119 QSFRKFPL-----YFDDLYCNLLGAGEAAGILDSLLDRLATYKEKILAIKSKIKSALFYP 173

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            +   I   +   +   V        +    D  G  L+ +A +   +    
Sbjct: 174 ISIIVIAFVITAVIMIFVIPAFKDLFSNFGADLPGPTLVVMAISDFFVAWWW 225



 Score = 42.8 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/160 (10%), Positives = 44/160 (27%), Gaps = 19/160 (11%)

Query: 2   KHLIKKRTAKFLDDFPNA------------LDIIVRSVRAGLPVSDAVAVIVGQSSDPV- 48
              +++R  + +   P                 +     AG+P+ +A   + G + + V 
Sbjct: 245 NKTMQRRMDQLMLKIPVFGPLVRKASIARWSRTLATMFAAGVPLVEAFDSVAGAAGNAVY 304

Query: 49  RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRI 108
               + +      G SL+ ++                  +    +  G L   L  ++  
Sbjct: 305 YDATKAIQREVTSGTSLTVAMQN------TDAFPSMVLQMVAIGEESGALDAMLGKVADF 358

Query: 109 LRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
                +   +  +  ME      +   +   V  +     
Sbjct: 359 FEAEVDDAVEALSSLMEPVIMVVLGTLIGGMVVAMYLPIF 398


>gi|291087379|ref|ZP_06346291.2| putative bacterial type II secretion system protein F domain
           protein [Clostridium sp. M62/1]
 gi|291075554|gb|EFE12918.1| putative bacterial type II secretion system protein F domain
           protein [Clostridium sp. M62/1]
          Length = 268

 Score = 85.6 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 78/179 (43%), Gaps = 6/179 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRVIETQHLGLSLSES 68
            F  A+ ++  S+ AG  + ++ +    Q  +       +  EF  +     L  +L E 
Sbjct: 90  QFKEAVLMLSSSLAAGYSMENSFSQAEIQLRELYGERAMMADEFSDMRRQLSLNRTLEEL 149

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
            S       ++E+  F+ ++    + GG +   +++++ I+  +  ++ +++ ++ + + 
Sbjct: 150 WSDFADRSGVEEIRSFALILRSARRNGGRMGAVISHIAEIIGGKLQVQEEIRTMTAQKQF 209

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
              I+  LP  +   +  TSPG+ + +     G +++ V  A      ++   M+  ++
Sbjct: 210 EQKIMNLLPILIVLYIDVTSPGFFDSMYETTVGRIVMTVCLAVYAGAYVLAGRMLEIEI 268


>gi|114798130|ref|YP_761686.1| type II secretion system protein [Hyphomonas neptunium ATCC 15444]
 gi|114738304|gb|ABI76429.1| type II secretion system protein [Hyphomonas neptunium ATCC 15444]
          Length = 339

 Score = 85.6 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 64/156 (41%), Gaps = 5/156 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + +L +KR    +  FP+ALD+++  V AG+ +      +  +   +S  +  EF   + 
Sbjct: 162 ISNLAQKRQKSLMRAFPDALDMLLICVEAGMSIEMGFNKVSQEIGSASPELAEEFGITVA 221

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +      + V      +    + G  L +AL  +++  R+ +  +A
Sbjct: 222 ELSYLPDRRLAYENLALRTGHEGVKAVCMALGQAERYGTPLGDALRMMAKENREMRMSEA 281

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153
           + +A S+ AK +  +I      +  +V    P Y+ 
Sbjct: 282 EKKAASLPAKLTVPMILFFLPVLFLVV--LGPAYIQ 315


>gi|303241709|ref|ZP_07328206.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
 gi|302590710|gb|EFL60461.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
          Length = 306

 Score = 85.6 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 74/157 (47%), Gaps = 2/157 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I +R  K L+  P+ LD++  SV AGL    A+A ++ +   P+  EF  V++   
Sbjct: 149 LNKQIAQRQKKILNSLPDVLDLLTVSVEAGLGFDGALAKVIDKMPGPIAIEFENVLQEMK 208

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G    +++  M   + L +++ F   I    QLG ++   L   S  +R+++  +AK +
Sbjct: 209 VGKQKRDALKDMAERVGLHDLTTFVGSIIQADQLGVSIGNVLRIQSEQMREKRRQRAKEK 268

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           A+    K    ++  +   + +++    P  + V+  
Sbjct: 269 AMKAPVKMLIPMVLFIFPTIFSVL--IGPVIIKVIYT 303


>gi|194290795|ref|YP_002006702.1| type IV pilus assembly transmembrane protein [Cupriavidus
           taiwanensis LMG 19424]
 gi|193224630|emb|CAQ70641.1| type IV pilus ASSEMBLY TRANSMEMBRANE PROTEIN [Cupriavidus
           taiwanensis LMG 19424]
          Length = 423

 Score = 85.2 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 57/179 (31%), Gaps = 7/179 (3%)

Query: 1   MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIET 58
           +K     R  K    D       +   ++AG+P+  ++ +I     +         +   
Sbjct: 70  LKKRKAARGRKITEKDIAYFTRQLSTMLKAGIPLLQSIDIIARGHVNPNFTQLLSDIRFD 129

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G S++ +  R  +             +    + GG L   L  LS  +     +K +
Sbjct: 130 IEAGSSMAAAFRRHPK-----YFDTLYCNLIDAGEQGGILDSLLERLSLYMEKTIALKGQ 184

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +++  +   A   +  ++   +   V     G  +    +     LL +A +   +   
Sbjct: 185 IKSAMIYPIAVLTVAFAVTVILMLFVIPAFKGVFSSFGANLPAPTLLVIAISDFFVQYW 243


>gi|307943150|ref|ZP_07658495.1| type II secretion system protein [Roseibium sp. TrichSKD4]
 gi|307773946|gb|EFO33162.1| type II secretion system protein [Roseibium sp. TrichSKD4]
          Length = 326

 Score = 85.2 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 65/161 (40%), Gaps = 4/161 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +++ I+KR       +P+ALD+++  V +G+ +  A+  +  +    S  +  E      
Sbjct: 165 LQNTIEKRQKAIGRAWPDALDLMLICVESGMSIEVAMQKVADEIGVQSADLAEELTLTTA 224

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +     +  +      +    + G  +++AL  +S   RD++  +A
Sbjct: 225 ELSYLQDRRIAFENLGNRTGMDNIKNVVMALIQAERYGTPVAKALRAMSDDTRDQRMQEA 284

Query: 118 KVQALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + +A S+  K     I+  LP   + ++       M+V+  
Sbjct: 285 EKKAASLPPKLTVPMIVFFLPVLFAVIMTPAILQIMDVMGG 325


>gi|308176985|ref|YP_003916391.1| type II secretion system protein F [Arthrobacter arilaitensis
           Re117]
 gi|307744448|emb|CBT75420.1| putative type II secretion system protein F [Arthrobacter
           arilaitensis Re117]
          Length = 283

 Score = 85.2 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 72/188 (38%), Gaps = 3/188 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++H   KR A   + +P  +D +  ++RAGL + +A++ +       +R  FR       
Sbjct: 92  LRHQAAKRQAALQEQWPEVVDHLRSAIRAGLSLPEALSQLAMVGPQILRPLFRDFALDYR 151

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKV 119
              + + ++ ++   +         T + +  +  G +L   L  LS  LRD    + ++
Sbjct: 152 ATANFAVALDQLGERLADPVADKILTTLRITREVGGTDLGHTLTTLSAFLRDDVRTRGEL 211

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            A      ++A +  + P+ +  ++                G ++L +      I   +M
Sbjct: 212 AARQSWIVSAARLAVAAPWILLLVLGT--QEAAKDAYMTVGGVIVLSLGMLVSFICYRIM 269

Query: 180 RLMINFDV 187
             +    V
Sbjct: 270 LRLGTLPV 277


>gi|113869209|ref|YP_727698.1| Type IV pilus assembly protein PilC [Ralstonia eutropha H16]
 gi|113527985|emb|CAJ94330.1| Type IV pilus assembly protein PilC [Ralstonia eutropha H16]
          Length = 423

 Score = 85.2 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 57/179 (31%), Gaps = 7/179 (3%)

Query: 1   MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIET 58
           +K     R  K    D       +   ++AG+P+  ++ +I     +         +   
Sbjct: 70  LKKRKAARGRKITEKDIAYFTRQLSTMLKAGIPLLQSIDIIARGHVNPNFTQLLSDIRFD 129

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G S++ +  R  +             +    + GG L   L  LS  +     +K +
Sbjct: 130 IEAGSSMAAAFRRHPK-----YFDTLYCNLIDAGEQGGILDSLLERLSLYMEKTIALKGQ 184

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +++  +   A   +  ++   +   V     G  +    +     LL +A +   +   
Sbjct: 185 IKSAMIYPIAVLTVAFAVTVILMLFVIPAFKGVFSSFGANLPAPTLLVIAISDFFVQYW 243


>gi|296131925|ref|YP_003639172.1| Type II secretion system F domain protein [Thermincola sp. JR]
 gi|296030503|gb|ADG81271.1| Type II secretion system F domain protein [Thermincola potens JR]
          Length = 319

 Score = 85.2 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 59/145 (40%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K R  +     P+ LD +  +++AG+P+  A+  +V     P+  E +R      
Sbjct: 156 INMLAKSRQEQIALGLPDFLDGMSVTLQAGVPLDAAMNQVVNHMEGPLAEELQRFNRELE 215

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+   E+  R+V     +E+      +   S+LG  ++     ++  +R  +  K K +
Sbjct: 216 LGVPREEAYHRLVNRNECEELETLVQSLIQGSKLGVPIARTFKVMADDMRITRFNKVKEK 275

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145
           A     K +      +   V   + 
Sbjct: 276 AAKASPKVTLVTSFIITPGVMLAIL 300


>gi|319795782|ref|YP_004157422.1| type II secretion system f domain [Variovorax paradoxus EPS]
 gi|315598245|gb|ADU39311.1| Type II secretion system F domain [Variovorax paradoxus EPS]
          Length = 330

 Score = 85.2 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 84/185 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   ++K   + +   P  +D +VR +  G     A  + +     P+R    R      
Sbjct: 145 LWLRLQKFRRQLVSQLPAYIDSMVRLITIGNSTQAAFQLAIANCEPPLRGYLDRAASLVR 204

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ L  ++ +    + ++E+   ++++ +  + GG     L  ++  +RDR+  + ++ 
Sbjct: 205 AGVDLDRALHQTAVSVRIEEMYLLASILGLGVRYGGRADLLLERVANFMRDREQAEHELV 264

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SAWI+G LP  V T +  ++P Y   L ND  G ML+  A    L+G   + 
Sbjct: 265 AMSSETRLSAWILGLLPVGVCTFLMISNPSYFMGLWNDGTGRMLIFSAVGLQLLGAAFLY 324

Query: 181 LMINF 185
            +   
Sbjct: 325 RLARL 329


>gi|163738365|ref|ZP_02145780.1| type II secretion system protein [Phaeobacter gallaeciensis BS107]
 gi|163742218|ref|ZP_02149606.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter
           gallaeciensis 2.10]
 gi|161384548|gb|EDQ08929.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter
           gallaeciensis 2.10]
 gi|161388286|gb|EDQ12640.1| type II secretion system protein [Phaeobacter gallaeciensis BS107]
          Length = 326

 Score = 85.2 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 72/160 (45%), Gaps = 3/160 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +   I++R  +    FP+ALD+++  V AG  +  A+  +  +   S   +  EF  V +
Sbjct: 164 ITRRIEERKQEITSGFPDALDMMLVCVEAGQSLDQAIVRVAKELHASYPALADEFDIVAQ 223

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G    + +  M     +Q+VS F TV+   +  G +++EAL   +  +RD++ M+A
Sbjct: 224 EMKAGKDKDKVMRDMGTRCGVQDVSSFVTVMIQSATFGTSIAEALRVYAGEMRDKRVMRA 283

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           +  A  +  K +   +      +  ++   S   +  L N
Sbjct: 284 EEAANKLPTKMTLATMTLTVPPLLIILVGPSAQGIANLGN 323


>gi|84494454|ref|ZP_00993573.1| hypothetical protein JNB_06649 [Janibacter sp. HTCC2649]
 gi|84383947|gb|EAP99827.1| hypothetical protein JNB_06649 [Janibacter sp. HTCC2649]
          Length = 289

 Score = 85.2 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 71/171 (41%), Gaps = 3/171 (1%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           +P+A+D I  +VRAG+ + +AVA +  +  + +R  F+   +   +     + + R+   
Sbjct: 113 WPDAVDNITSAVRAGMSLPEAVAQLGLRGPEELRPAFQAFAQDYRITGRFHDCLDRLKER 172

Query: 76  MPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           +           + +  +  G +L   L  LS  LR+    +++++        +A +  
Sbjct: 173 LSDPVADRLIESLRIAREVGGSDLGRLLRTLSVFLREDSRTRSELETRQSWTVNAARLAV 232

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           + P+ V  ++  T P  +    +   G ++L   A    +   VM  +   
Sbjct: 233 AAPWIVLAMLS-TRPESVQA-YSTGTGALILFFGAVMTAVAYWVMVRIGRL 281


>gi|187930139|ref|YP_001900626.1| type II secretion system protein [Ralstonia pickettii 12J]
 gi|309783039|ref|ZP_07677758.1| type IV pilus biogenesis protein PilC [Ralstonia sp. 5_7_47FAA]
 gi|187727029|gb|ACD28194.1| type II secretion system protein [Ralstonia pickettii 12J]
 gi|308918147|gb|EFP63825.1| type IV pilus biogenesis protein PilC [Ralstonia sp. 5_7_47FAA]
          Length = 424

 Score = 85.2 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 59/179 (32%), Gaps = 7/179 (3%)

Query: 2   KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ 59
           K     R  K    D       +   ++AG+P+  ++ +I    ++         +    
Sbjct: 72  KRRRAARGKKITPKDIAYFTRQLSTMLKAGVPLLQSIDIIAKGHANPNFTQLLTEIRVDI 131

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G S++++  R  +             +    + GG L   L  LS  +     +KA++
Sbjct: 132 ESGSSMAQAFRRHPK-----YFDTLYCNLIDAGEQGGILDALLERLSLYMEKSLALKAQI 186

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           ++  +   +   +   +   +   V  +  G  +    D     L  +A +   +   +
Sbjct: 187 KSALIYPISVLTVAFLVTVVLMIFVVPSFKGVFSGFGADLPAPTLFVIAISDFFVKWWI 245


>gi|220923700|ref|YP_002499002.1| type II secretion system protein [Methylobacterium nodulans ORS
           2060]
 gi|219948307|gb|ACL58699.1| type II secretion system protein [Methylobacterium nodulans ORS
           2060]
          Length = 321

 Score = 85.2 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +K+ I KR       +P+ALD+++  V +G+ V  A   +  +    S  +  E      
Sbjct: 163 VKNRISKRQTAIRRAWPDALDLLLICVESGMGVESAFRKVADEIGPQSPELAEELSLTTA 222

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   +     L  V    T +    + G  + + L  L++  RD +  +A
Sbjct: 223 ELSYLPDRRKAYENLAERTGLDGVKGVVTSLIQAEKYGTPVGQTLRVLAQENRDMRMTEA 282

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 283 EKKAAALPPKLTVPMILFFLPVLFAVII 310


>gi|260574611|ref|ZP_05842614.1| type II secretion system protein [Rhodobacter sp. SW2]
 gi|259023028|gb|EEW26321.1| type II secretion system protein [Rhodobacter sp. SW2]
          Length = 326

 Score = 85.2 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 71/148 (47%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   +KKR A+ +  FP+ALD+++  V AG  +  ++  +  +S      +  EF  V +
Sbjct: 163 VNSRVKKRQAEIVSGFPDALDMMLVCVEAGQSMDQSIIRVARESRAGYPALADEFDMVAQ 222

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G   +  +  M   + + +V+ F T +   +  G +++EAL   S  +RD++ M+A
Sbjct: 223 EIKAGKERTTVMRDMSERVGIADVASFVTTLVQSATFGTSIAEALRVYSAEMRDKRVMRA 282

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +   +      +  ++ 
Sbjct: 283 EEKANTLPTKLTLGTMLFTLPPLLIILI 310


>gi|121593228|ref|YP_985124.1| type II secretion system protein [Acidovorax sp. JS42]
 gi|120605308|gb|ABM41048.1| type II secretion system protein [Acidovorax sp. JS42]
          Length = 405

 Score = 84.8 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 56/182 (30%), Gaps = 10/182 (5%)

Query: 3   HLIKKRT---AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIE 57
            + K+R     K    D       +   ++AG+P+  A  ++    ++  V      +  
Sbjct: 51  KIKKRRMSAGKKIKPKDIALFTRQMATMMKAGVPLLQAFDIVGRGNTNPSVTKLLNDIRG 110

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G SL+ +  +                +    +  G L   L  L+  +   + +K+
Sbjct: 111 DVETGTSLNAAFRKYPM-----YFDSLYCNLVEAGEAAGILEALLDRLALYMEKTEAIKS 165

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           K+++  M   +   +   +   +   V             D     L  +A +   +   
Sbjct: 166 KIRSALMYPISVIIVAFVVVTIIMIFVIPAFKEVFTSFGADLPAPTLFVMAISEFFVAYW 225

Query: 178 VM 179
            +
Sbjct: 226 WL 227


>gi|149915637|ref|ZP_01904163.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
           sp. AzwK-3b]
 gi|149810529|gb|EDM70372.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
           sp. AzwK-3b]
          Length = 328

 Score = 84.8 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 71/158 (44%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +    ++R     + FP++LD+++  V AG  +  ++  +  +   S   +  E++ V  
Sbjct: 165 VTKRQQQRQEDITNGFPDSLDMMLTCVEAGQSLDQSIVRVSNEIAASYPALAEEYQIVAN 224

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G      ++ M     +Q++S F TV+      G ++++AL   +  +RD++ M+A
Sbjct: 225 QIKAGRDKPSVLNEMAERCGVQDISSFVTVLVQSQTFGTSIADALRVYAGEMRDKRVMRA 284

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A  +  K +   +      +  ++    P  + +L
Sbjct: 285 EEKANKLPTKMTLATMMLTVPPLLIIL--VGPSVIGIL 320


>gi|255327036|ref|ZP_05368112.1| type II secretion system protein [Rothia mucilaginosa ATCC 25296]
 gi|255296253|gb|EET75594.1| type II secretion system protein [Rothia mucilaginosa ATCC 25296]
          Length = 284

 Score = 84.8 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 73/183 (39%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + H  +   A+    +P+A+D +  ++RAGL + +A+  +  +  + +R  F        
Sbjct: 93  VNHRARAADARIWQLWPDAVDHLRSAIRAGLSLPEALIQLSYRGPEELRDAFAHFSRDYR 152

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVI-SVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                  S++R+  Y+           +   +   G +L + L  LS  LR+    ++++
Sbjct: 153 ASGEFVPSLNRLKEYLSDPVADTIIEALKIAREVGGSDLGKLLGTLSDFLRENARTRSEL 212

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            A       +A +    P+ V  L+         ++ N   G ML+   AA  L    +M
Sbjct: 213 LARQSWTVNAARLSCVAPWFVLCLMAT--QPAARMVYNSFAGAMLMIAGAAISLAAYRLM 270

Query: 180 RLM 182
             +
Sbjct: 271 LRI 273


>gi|237798378|ref|ZP_04586839.1| type II secretion system protein, F domain [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331021230|gb|EGI01287.1| type II secretion system protein, F domain [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 294

 Score = 84.8 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 92/173 (53%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
            ++  P  LD  VRS+++G  ++DAV   +  ++ P++    R+     LG+SL ++   
Sbjct: 120 MIEQLPQLLDHSVRSLKSGRTLADAVLFGITAANQPLKEGMSRIERNVQLGVSLPDAARD 179

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                   E   F+  + V  + GGN SE + NL R++RDR+    +++A++ E + +A 
Sbjct: 180 FAELYESDEFHLFALGLRVNHRYGGNASELMENLIRLIRDREQASRQLRAMTGETRMTAL 239

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           ++G LP  ++      +P Y+  + ND  G +LL +A A  L+G +++  M+ 
Sbjct: 240 VLGLLPVGMAGYFMAVNPAYLMHMWNDGSGRILLSMAFALQLLGCLMLWRMLR 292


>gi|254293219|ref|YP_003059242.1| type II secretion system protein [Hirschia baltica ATCC 49814]
 gi|254041750|gb|ACT58545.1| type II secretion system protein [Hirschia baltica ATCC 49814]
          Length = 333

 Score = 84.8 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 66/157 (42%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + +   KR A  +  FP++LD+++  V +G+ +  A A +  +   +S  +  E      
Sbjct: 159 LTNRADKRKASIMKAFPDSLDMMLICVESGMSIESAFAKVGEEVGTASVELAEELGLTTA 218

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   +        +   +T +    + G  +  AL  +++  R+ + ++A
Sbjct: 219 ELSYLQERRQAYVNLADRTNHPGIKSVATALVQAEKYGTPMGTALRTMAKENREIRVLEA 278

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           + +A ++ AK +  +I      +  ++    P Y+ +
Sbjct: 279 EKKAAALPAKLTVPMIVFFLPVLFIVIGT--PAYIQI 313


>gi|291459839|ref|ZP_06599229.1| putative bacterial type II secretion system protein F domain
           protein [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417629|gb|EFE91348.1| putative bacterial type II secretion system protein F domain
           protein [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 285

 Score = 84.8 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 75/191 (39%), Gaps = 7/191 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55
           K L KKR  +    F   L+ +  ++ +G+ ++D++  +             +  E   +
Sbjct: 95  KMLQKKRITELSIQFRGFLEALAVALSSGMNMNDSLQSVYKDLVLEYTRDSWIVKETEEM 154

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           I      + + + I  +      +++  F+TV +V  + GGN+ + +   + I+ ++  +
Sbjct: 155 ISGMRNNIPIEDMIRSLGERSDNRDIRNFATVFNVSYRAGGNIRDIVRRTADIIGEKIEI 214

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
             ++       K     +  +P  +  ++      +     + P G +    A    ++ 
Sbjct: 215 SGEIATAISSNKLQFNAMMVIPVFLILMLRAMGGNFAKS-FSTPLGVIATTFALGIFVLA 273

Query: 176 IMVMRLMINFD 186
            ++ + +++  
Sbjct: 274 FLLGQKIMDIK 284


>gi|311697135|gb|ADQ00007.1| type II secretion system protein [marine bacterium HP15]
          Length = 305

 Score = 84.8 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 76/178 (42%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +++  +  ++ P+ LD ++RS+  G  V  +V       S        R+      G   
Sbjct: 122 ERQRRQIFEELPSILDGMIRSISVGRSVEQSVVAAFSDGSPVFDPLIFRLKNAVGQGRDY 181

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           +  I        + ++   +      S+ G +L   L  +++ +R R++++ +  A + E
Sbjct: 182 TRVIDEFAALYQIPDLVQVAIAFRTSSRFGSSLRPVLMEVAKAIRSRQDLRREFMAATAE 241

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            + +A     +P  ++  +   + G+   L++   G  LL ++    LIGI+ +  +I
Sbjct: 242 TRFTAVAFAIIPPGLAAYMVILNDGFSAQLLDTNAGQTLLWMSGILQLIGIVFIWRLI 299


>gi|116620536|ref|YP_822692.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223698|gb|ABJ82407.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 315

 Score = 84.4 bits (207), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 64/158 (40%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++  + KR        P+ALD++V S+ AGL +  A+  +  +   S   +  E + V  
Sbjct: 149 LEKRVAKRQETLRLSLPDALDLLVVSIEAGLGLDQAIQHVARELYASHPQLSDEMQLVTL 208

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G   SE++          E      ++    + G ++ E+L   S  LR R+  +A
Sbjct: 209 EMRAGKRRSEALRNFAERTGEAEFRKLVAILIQNDRFGTSMGESLRTHSDFLRTRRRQEA 268

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A  +  K    I   +   +  LV    PG + + 
Sbjct: 269 EERAGKVGVKLVFPIFFFILPSM--LVVAAGPGILQIF 304


>gi|222109982|ref|YP_002552246.1| type II secretion system protein [Acidovorax ebreus TPSY]
 gi|221729426|gb|ACM32246.1| type II secretion system protein [Acidovorax ebreus TPSY]
          Length = 405

 Score = 84.4 bits (207), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 56/182 (30%), Gaps = 10/182 (5%)

Query: 3   HLIKKRT---AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIE 57
            + K+R     K    D       +   ++AG+P+  A  ++    ++  V      +  
Sbjct: 51  KIKKRRMSAGKKIKPKDIALFTRQMATMMKAGVPLLQAFDIVGRGNTNPSVTKLLNDIRG 110

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G SL+ +  +                +    +  G L   L  L+  +   + +K+
Sbjct: 111 DVETGTSLNAAFRKYPM-----YFDSLYCNLVEAGEAAGILEALLDRLALYMEKTEAIKS 165

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           K+++  M   +   +   +   +   V             D     L  +A +   +   
Sbjct: 166 KIRSALMYPISVIIVAFVVVTIIMIFVIPAFKEVFTSFGADLPAPTLFVMAISEFFVAYW 225

Query: 178 VM 179
            +
Sbjct: 226 WL 227



 Score = 34.7 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 41/131 (31%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+ +A+  + G S + V +    ++ +    G SL+ ++        
Sbjct: 275 WTRTLSTMFAAGVPLVEALDSVAGASGNSVYAIATEKIQQEVSTGTSLTAAMGNA----- 329

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G++   L   +       +      +  ME     ++   + 
Sbjct: 330 -NVFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDEMVAGLSSLMEPIIIVFLGTLIG 388

Query: 138 FCVSTLVYFTS 148
             V ++     
Sbjct: 389 GIVVSMYLPIF 399


>gi|241664289|ref|YP_002982649.1| type II secretion system protein [Ralstonia pickettii 12D]
 gi|240866316|gb|ACS63977.1| type II secretion system protein [Ralstonia pickettii 12D]
          Length = 420

 Score = 84.4 bits (207), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 59/179 (32%), Gaps = 7/179 (3%)

Query: 2   KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ 59
           K     R  K    D       +   ++AG+P+  ++ +I    ++         +    
Sbjct: 68  KRRRAARGKKITPKDIAYFTRQLSTMLKAGVPLLQSIDIIAKGHANPNFTQLLTEIRVDI 127

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G S++++  R  +             +    + GG L   L  LS  +     +KA++
Sbjct: 128 ESGSSMAQAFRRHPK-----YFDTLYCNLIDAGEQGGILDALLERLSLYMEKSLALKAQI 182

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           ++  +   +   +   +   +   V  +  G  +    D     L  +A +   +   +
Sbjct: 183 KSALIYPISVLTVAFLVTVVLMIFVVPSFKGVFSGFGADLPAPTLFVIAISDFFVKWWI 241


>gi|256827716|ref|YP_003151675.1| Flp pilus assembly protein TadB [Cryptobacterium curtum DSM 15641]
 gi|256583859|gb|ACU94993.1| Flp pilus assembly protein TadB [Cryptobacterium curtum DSM 15641]
          Length = 321

 Score = 84.4 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 91/182 (50%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
            H I++R     +  P+A+  I   + AGL      + +  +S  P++  F RV +    
Sbjct: 135 SHAIERREDALREALPDAVWSIGICLHAGLSQQQTFSRLEEESHGPLKEVFSRVSQALAA 194

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L E+++ +     ++E++F +T + +Q Q GG++ + L     +L    N++  +  
Sbjct: 195 GSPLDEALALLKGDGSIRELTFVATALEIQHQAGGSMKQVLETAGEMLAHETNLRRSLAV 254

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            + +A+ SA ++ ++   ++ ++   S G++    +   G ++L VA +  + GIM +R 
Sbjct: 255 NTAQARLSARVVVAVTVLLAGVLSVLSDGFLETFFSSTEGIIMLAVALSMQVGGIMAVRK 314

Query: 182 MI 183
           ++
Sbjct: 315 IL 316


>gi|92113784|ref|YP_573712.1| type II secretion system protein [Chromohalobacter salexigens DSM
           3043]
 gi|91796874|gb|ABE59013.1| type II secretion system protein [Chromohalobacter salexigens DSM
           3043]
          Length = 291

 Score = 84.4 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 84/170 (49%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
             P  L+  +R +  G     A    + +S+ P+R+   RV   + LGL L E + R  +
Sbjct: 120 QLPGYLEQFLRELAVGASPERAFQRQIARSAPPLRNMLERVWVRRELGLELHEGLVRESQ 179

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            + L E++  +T + V  + GG+L + L +   +LR ++  + +++AL+ E + +A ++ 
Sbjct: 180 LLKLSELALLATALEVNQRHGGSLRDILGSFVTLLRQQERGRRELKALTGETRFTAVVLA 239

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            +P  +   +  T+P +++ + +   G   L +A    L G  VM  M+ 
Sbjct: 240 VIPVLIGGYILLTNPEFLSTMWHSADGRAALWLALGLELSGCFVMWRMLK 289


>gi|239817415|ref|YP_002946325.1| type II secretion system protein [Variovorax paradoxus S110]
 gi|239803992|gb|ACS21059.1| type II secretion system protein [Variovorax paradoxus S110]
          Length = 241

 Score = 84.4 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 84/182 (46%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            ++K   + +   P  +D +VR +  G     A  + +  +  P+R    R       G+
Sbjct: 59  RLQKVRRQLISQLPAYIDAMVRLITIGNSTQAAFQLAIATTQAPLRGHMERSAALVRAGV 118

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L  ++ +    + ++E+   ++++ +  + GG     L  ++  +RDR+  + ++ A+S
Sbjct: 119 DLDRALHQTANNVRVEEMFLLASILGLGVRYGGRSDLLLERVANFMRDREQAEHELVAMS 178

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAWI+G LP  V T +   +P Y   + ND  G ML+  +A   L+G   +  + 
Sbjct: 179 AETRLSAWILGLLPLGVGTFLVVVNPDYFLSMWNDDTGRMLIFSSAGLQLLGAFFLYRLA 238

Query: 184 NF 185
             
Sbjct: 239 RL 240


>gi|282865305|ref|ZP_06274357.1| type II secretion system protein [Streptomyces sp. ACTE]
 gi|282559778|gb|EFB65328.1| type II secretion system protein [Streptomyces sp. ACTE]
          Length = 295

 Score = 84.0 bits (206), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 66/161 (40%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  I +R        P+ LD++   V AGL    A+  +  + S P   E R  +    
Sbjct: 134 IRSAISRRKDDIDRTLPDFLDVLAVVVSAGLGFRQALERVAEKYSGPWADELRITLRQMD 193

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+S  E+  ++ +    ++VS F + +    +LG  + + L  ++  +R      A+ +
Sbjct: 194 MGVSRREAFDQLRKRNESEQVSMFVSALQQGEELGAPIVDTLIQIANDMRRTDAQNARRK 253

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           A     KA+  +   +      L+        +V I D  G
Sbjct: 254 AAKAVPKATLIVTSFMLPGTMILIAVGFYYAADVNIGDVFG 294


>gi|238750901|ref|ZP_04612398.1| Type II secretion system protein F domain protein [Yersinia rohdei
           ATCC 43380]
 gi|238710815|gb|EEQ03036.1| Type II secretion system protein F domain protein [Yersinia rohdei
           ATCC 43380]
          Length = 272

 Score = 84.0 bits (206), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 80/184 (43%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   KK  + F  DFP  L +I  +  +G  ++  +     + + P+ SE R +    +
Sbjct: 86  IKAARKKHYSLFKQDFPEVLLMINMASSSGASINQVLERCGQEITGPLGSELRLICRRLN 145

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S         +     E  F  T+I +  Q GG L +    LS+I+   K  + K  
Sbjct: 146 LGESPESVFHDAYQRFNFPEFYFLITIILLNLQQGGQLKDLTNRLSQIISKNKTAEQKKA 205

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++ E + S  II  +P   S L+YF     +  + N P G ++        +IGI ++R
Sbjct: 206 TMTAETRMSVNIISVMPIAFSLLLYFIDSTSIESMWNHPTGKLIFYYIIISEIIGISLIR 265

Query: 181 LMIN 184
            M+ 
Sbjct: 266 KMLR 269


>gi|238897545|ref|YP_002923224.1| putative tight adherance operon protein B [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229465302|gb|ACQ67076.1| putative tight adherance operon protein B [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 300

 Score = 84.0 bits (206), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 74/180 (41%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            K++   F + FP  L I      +G+ V++ +     +    +  E   +     +G +
Sbjct: 118 KKQKKIYFTETFPELLLIFNMGSVSGISVNEILKKAGQEIKGGLGKECDLIFRRLSIGEN 177

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           ++       +     E   F  ++ +    GG L E +  L++++ +   M+ +  A++ 
Sbjct: 178 INTVFYDAYQRFSYPEFYMFINILMLNINQGGQLRELMHRLNQVVTNYNKMEKRKMAMTG 237

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           E + S W++  +P       YF +P     + +   G +++    A   +GI +MR M  
Sbjct: 238 EIRMSIWVVTLIPVIFFAFSYFMNPLSFQKIFSYEIGKIIIYYCLASNTLGIFIMRYMFR 297


>gi|51891529|ref|YP_074220.1| putative sercretion system protein [Symbiobacterium thermophilum
           IAM 14863]
 gi|51855218|dbj|BAD39376.1| putative sercretion system protein [Symbiobacterium thermophilum
           IAM 14863]
          Length = 299

 Score = 84.0 bits (206), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 84/173 (48%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +  P  L ++   +RAG  +  AV  +V Q+  P+R EF RV     L +   +++  + 
Sbjct: 125 EQLPETLMLMASVIRAGGTLYQAVQTVVQQAPQPMRGEFERVARAMQLQVPAGDALGLIR 184

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
             + L E +       V  + GG+L   L ++SR L + +     ++A   E KASA ++
Sbjct: 185 DRVGLGEFTSVVVACKVAGEAGGDLDRVLESISRELVEDRQFLRAMEAACAEGKASARLV 244

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
            ++P  V  LV + +P Y    + DP G +LL  +   M +G +++R + +  
Sbjct: 245 TAVPLVVVALVSYQNPAYFGEALTDPLGRVLLLGSLCAMALGWLLIRQITDVR 297


>gi|229821271|ref|YP_002882797.1| type II secretion system protein [Beutenbergia cavernae DSM 12333]
 gi|229567184|gb|ACQ81035.1| type II secretion system protein [Beutenbergia cavernae DSM 12333]
          Length = 285

 Score = 84.0 bits (206), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 64/176 (36%), Gaps = 3/176 (1%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           +    +P+ +D +  +VRAG+ + +A+  +  +    VR+E                S+ 
Sbjct: 104 ELRQVWPDVVDDLTSAVRAGMTLPEALISLSERGPQEVRAELHAFAVDYRASGRFVASLD 163

Query: 71  RMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            +   +           + +     G +L   L  LS  LRD    + +++A        
Sbjct: 164 ALKERLADPVADRIVETLRIATDVGGSDLGRMLRTLSEFLRDDLRTRGELEARQSWTVNG 223

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           A +  + P+ V  L+  T P       + P G ++L       ++  + M  +   
Sbjct: 224 ARLAVAAPWVVLALMS-TRPE-TAAAFDTPAGVLMLLAGGLTCVVAYLAMMRIGRL 277


>gi|260768629|ref|ZP_05877563.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972]
 gi|260616659|gb|EEX41844.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972]
          Length = 292

 Score = 84.0 bits (206), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 91/176 (51%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
             + +   P+ ++ + R ++ GL ++ AV      ++ P++   +RVI  + +G+ L ++
Sbjct: 115 KLQLVQQLPSFVEQVNRRIKVGLSIAQAVEQSASATNAPLKDVLQRVIHRKAVGVELQDA 174

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
             +      +       ++ S+ ++ GG+++++L +L ++LR +   + ++++++ E + 
Sbjct: 175 FEKESVVTGVVAFHLLGSIFSINTRYGGSITDSLESLVKLLRQQDLSRRELKSITGETRI 234

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +AW+IGS P  VS  +   +P  +  +     G   L +  +  L+GI+++  M  
Sbjct: 235 TAWVIGSAPLLVSAYMLTQNPELLINMWYSEGGRQALILGISLQLLGIILIWRMFR 290


>gi|126733578|ref|ZP_01749325.1| Putative Flp pilus assembly protein TadC [Roseobacter sp. CCS2]
 gi|126716444|gb|EBA13308.1| Putative Flp pilus assembly protein TadC [Roseobacter sp. CCS2]
          Length = 321

 Score = 84.0 bits (206), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 70/160 (43%), Gaps = 5/160 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +    + R     + FP++LD+++  V AG  +  ++  +  +       +  EF  V +
Sbjct: 162 VTRRQQMRQEAIENAFPDSLDMMLVCVEAGQSLDQSIIRVARELKSGFPELAEEFEIVSQ 221

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G   +  +  M     + +++ F TV+   SQ G ++++AL   S  +RD++ M+A
Sbjct: 222 EAKAGKDKNTVLKDMSDRCGVPDIASFVTVLVQSSQFGTSIADALRVYSAEMRDKRVMRA 281

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + +A  +  K +   +      +  ++    P    ++ +
Sbjct: 282 EEKANKLPTKMTLATMMLTVPPLMAML--IGPSIYAIVTS 319


>gi|302335343|ref|YP_003800550.1| Type II secretion system F domain protein [Olsenella uli DSM 7084]
 gi|301319183|gb|ADK67670.1| Type II secretion system F domain protein [Olsenella uli DSM 7084]
          Length = 312

 Score = 84.0 bits (206), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 67/181 (37%), Gaps = 1/181 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L  +R      + P     +  ++ +G  +S AV  +       V   F R     H G 
Sbjct: 130 LESRRRRAIEREMPAVFRTLAMAMGSGETLSQAVDYLAAHGGGEVAKAFTRTSLRMHCGY 189

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              ES+  + R +    V    T + +  + G  L       +R++  +   +  +   +
Sbjct: 190 PARESLDLLARELDAPGVGLLVTALLISQRTGSPLRSLFRRSARLVERQGEFERMLGVKT 249

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            + + S  ++  LP  +  L+   S  +   L + P G   +  AA      I+++R ++
Sbjct: 250 AQVRLSVRVVSGLPVIMIALLSLISSDFQRGL-STPVGAACILAAALMDGAAILIIRRLM 308

Query: 184 N 184
            
Sbjct: 309 R 309


>gi|297618076|ref|YP_003703235.1| type II secretion system F domain protein [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297145913|gb|ADI02670.1| Type II secretion system F domain protein [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 295

 Score = 84.0 bits (206), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 65/145 (44%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R+   L   P+ LD++  SV AGL    A+  +V +S  P+  EF   +    
Sbjct: 139 LNLCRRQRSEGILKSLPDVLDLLSVSVEAGLGFDAALQKVVEKSQGPLADEFDTALNEIR 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G    E++  M R + + +VS F   +     LG ++S  L   +  +R ++  +A+ +
Sbjct: 199 MGKPRREALRDMARRVEVDDVSTFVGAVVQADTLGVSISNVLTVQAEQVRQKRRQRAEEK 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145
           A     K    ++  +   +  ++ 
Sbjct: 259 AQKAPVKILIPMLFFIFPTIFIVLL 283


>gi|167725257|ref|ZP_02408493.1| type II secretion system protein [Burkholderia pseudomallei DM98]
          Length = 275

 Score = 84.0 bits (206), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 4/165 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   I  R    ++DFP+ALD++   V AGL +  A+  +  +    S  V  E   ++ 
Sbjct: 110 LARRIAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLL 169

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +      ++V  FST++    + G ++  +L  LS  LR ++ M+A
Sbjct: 170 EMRSGFTKETALRNLALRTGAEDVDAFSTMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 229

Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           + +A  +        I    P  ++ L+          L+    G
Sbjct: 230 EERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRTLLPTMAG 274


>gi|328884729|emb|CCA57968.1| putative integral membrane protein [Streptomyces venezuelae ATCC
           10712]
          Length = 295

 Score = 84.0 bits (206), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 56/137 (40%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  +     P+ LD++   V AGL    A+  +  +   P   E R  +    +G+S  +
Sbjct: 141 RKDQIERTLPDFLDVLAVVVSAGLGFRQALERVAEKYEGPWADELRITLRQMDMGVSRRQ 200

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +   + R    ++V+ F T +    +LG  + E L  ++  +R      A+ +A     K
Sbjct: 201 AFDELRRRNDSEQVAQFVTALQQGEELGAPIVETLIQIANDMRRTDAQNARRKAAKAVPK 260

Query: 128 ASAWIIGSLPFCVSTLV 144
           A+  I   +      L+
Sbjct: 261 ATMVITTLMVPATMILL 277


>gi|187478774|ref|YP_786798.1| pilus assembly protein [Bordetella avium 197N]
 gi|115423360|emb|CAJ49894.1| putative pilus assembly protein [Bordetella avium 197N]
          Length = 282

 Score = 84.0 bits (206), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 84/170 (49%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
              P  L  +  ++RAG  +  A+  +   +  P+  E   ++  Q LG+S  +++ R+ 
Sbjct: 109 AQLPAGLLSLASALRAGASLPAALRQLADLAQPPLAQEIGLMLREQRLGVSFDDALHRLE 168

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
             + L  V   +    V    GGNL++ L  +++ LR +   + +++AL+ + +  AW++
Sbjct: 169 CRVDLPSVRLMTAAFRVAGSAGGNLAQTLEGIAQALRGQLLAEGRLKALTAQGRMQAWVL 228

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            +LP  ++ ++Y   P  M  L     G +L+ +  A  ++G  ++R ++
Sbjct: 229 SALPLVLAVVLYLLRPEQMARLWQTEAGWILIALVMALQVLGWFLIRRIL 278


>gi|113866736|ref|YP_725225.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
 gi|113525512|emb|CAJ91857.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
          Length = 324

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 73/166 (43%), Gaps = 4/166 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   + +R     ++FP+ +D++   V AGL +  A+  +  +       +  E + ++ 
Sbjct: 157 LARKVAQRQRTVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLL 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S  +++S +     +++V  F++++    + G +L E+L  LS +LR ++ M+A
Sbjct: 217 ELRSGFSKEKALSNLSLRTGVEDVDKFASMLIQADRFGTSLGESLRVLSDMLRTKRRMRA 276

Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162
           + QA  +        I    P  +  L+         VL+    G 
Sbjct: 277 EEQAAKIALKLLFPLIFTIFPSLLLVLLGPAFIQIYRVLLPTMAGQ 322


>gi|319795465|ref|YP_004157105.1| type II secretion system f domain [Variovorax paradoxus EPS]
 gi|315597928|gb|ADU38994.1| Type II secretion system F domain [Variovorax paradoxus EPS]
          Length = 410

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 58/185 (31%), Gaps = 11/185 (5%)

Query: 1   MKHLIKKRT----AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRR 54
           +   IKKR           D       +   ++AG+P+  +  ++    ++  V      
Sbjct: 53  LASKIKKRRMRSGKAIKPKDIAIFTRQLATMMKAGVPLLQSFDIVGRGNANASVAKLLND 112

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           +      G SLS +  +  +             +    +  G L + L  L+  +   + 
Sbjct: 113 IRSDVETGTSLSAAFRKFPK-----YFDNLYCNLVEAGEAAGILEDLLDRLATYMEKTEA 167

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +K+K+++  M   +   +   +   +   V             D     L  +A +   +
Sbjct: 168 IKSKIKSALMYPTSVVVVAFVVVAIIMIFVIPVFKEVFTSFGADLPAPTLFVMAMSEFFV 227

Query: 175 GIMVM 179
               +
Sbjct: 228 SYWWL 232



 Score = 34.7 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 43/131 (32%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+ +A+  + G S + V      ++ +    G SL+ +++ +     
Sbjct: 280 WTRTLATMFAAGVPLVEALDSVGGASGNSVYGDATAKIQQEVSTGTSLTAAMTNV----- 334

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     ++   +  G++   L   +       +      +  ME     ++   + 
Sbjct: 335 -NLFPSMVIQMTAIGEESGSIDHMLGKAADFYESEVDDMVAGLSSLMEPIIIVFLGVIIG 393

Query: 138 FCVSTLVYFTS 148
             V ++     
Sbjct: 394 GIVVSMYLPIF 404


>gi|308068033|ref|YP_003869638.1| Flp pilus assembly protein TadB [Paenibacillus polymyxa E681]
 gi|305857312|gb|ADM69100.1| Flp pilus assembly protein TadB [Paenibacillus polymyxa E681]
          Length = 291

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 80/193 (41%), Gaps = 8/193 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFRR 54
           K L+++R +     F  AL  +  S+ AG  V +     V             +  EF  
Sbjct: 100 KFLLQRRRSALSIQFKQALYSLSSSLSAGRSVENGFREAVEDLRLLSPDGDHDLIFEFNI 159

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           +     +G  +  ++  + R   +++++ F+ V +   + GG+L E +   S ++ ++  
Sbjct: 160 ITACLEIGQPVEAALQELARRAQMEDITNFADVFAACKRTGGDLVEVVRRASSVIGEKLE 219

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           ++ ++  +  + +  + ++ + PF     +  T+  YM  L     G +L       +  
Sbjct: 220 IQQEIGVMIAQKRFESRVMFAAPFLFVLFMTMTAGDYMMPLY-SGTGMILSTFCLLVLGG 278

Query: 175 GIMVMRLMINFDV 187
            ++ +  ++  +V
Sbjct: 279 CLVWINHIMKIEV 291


>gi|300694108|ref|YP_003750081.1| type II secretion system protein [Ralstonia solanacearum PSI07]
 gi|299076145|emb|CBM10581.1| Type II secretion system protein [Ralstonia solanacearum PSI07]
          Length = 308

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 83/182 (45%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +  ++   + +   P  LD +VR +  G  V  A       +  P+R+      + Q  G
Sbjct: 125 NRTRRMNERLMQQLPGFLDGMVRLMSIGSAVPAAFQAASANTEPPLRTCLTSATQLQRAG 184

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             L  ++  + +   + E+   S+V+ +  + GG     +   +  +RDR+  + ++ AL
Sbjct: 185 KDLDAAVLAVGQQYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQKELLAL 244

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAWI+G LP  V  ++   +  Y+  +  DP G ML+  A    ++G +++  +
Sbjct: 245 SAETRLSAWILGLLPVVVGGIIIMFNAAYVMSMWRDPVGKMLMTAAFGLEVMGSLMLARL 304

Query: 183 IN 184
             
Sbjct: 305 AK 306


>gi|89053483|ref|YP_508934.1| type II secretion system protein [Jannaschia sp. CCS1]
 gi|88863032|gb|ABD53909.1| type II secretion system protein [Jannaschia sp. CCS1]
          Length = 326

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 71/160 (44%), Gaps = 5/160 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +    + R  +    FP+ALD+++  V AG  +  A+  +  +   S  P+  EF  V  
Sbjct: 166 ITKRAQTREDQINSGFPDALDLMLVCVEAGQSLDQAIIKVANEIKTSYPPLAEEFEIVSY 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G   ++ +  M   + +Q+V+ F T +   S  G +++EAL   S  +RD++  +A
Sbjct: 226 EMKAGKDKTKVLRDMGERVGIQDVNSFITTLIQSSTFGTSVAEALKVYSDEMRDKRISRA 285

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + +A  +  K + + +      +  ++    P    +  +
Sbjct: 286 EEKANKLPTKLTLFTMLFCVPPLLVIL--IGPSIYGIATD 323


>gi|328545274|ref|YP_004305383.1| hypothetical protein SL003B_3658 [polymorphum gilvum SL003B-26A1]
 gi|326415016|gb|ADZ72079.1| Hypothetical transmembrane protein [Polymorphum gilvum SL003B-26A1]
          Length = 325

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 63/160 (39%), Gaps = 5/160 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +++ I KR       +P+ALD+++  V +G+ +  A   +  +    S P+  E      
Sbjct: 166 IQNRITKRQQSIRRAWPDALDLMLICVESGMSIEAAFRKVADEIGIQSIPLAEELTLTNA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++     +   +  V   +  +    + G  +  AL  ++   R+++  +A
Sbjct: 226 ELSFLQERRQAYLNFAKRTGVDGVKNVTMALIQAERYGTPIGHALRVMADDNREQRMQEA 285

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + +A S+  K +  +I      +  ++    P  M ++  
Sbjct: 286 EKKAASLPPKLTVPMIVFFLPVLFFVI--MGPAVMQIIAT 323


>gi|319639058|ref|ZP_07993815.1| PilG protein [Neisseria mucosa C102]
 gi|317399636|gb|EFV80300.1| PilG protein [Neisseria mucosa C102]
          Length = 413

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 64/187 (34%), Gaps = 7/187 (3%)

Query: 1   MKHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIET 58
           +  +   R  +   +D       +   ++AGLP+  A  ++    S+  +     +V   
Sbjct: 59  ISKVKTARKRRITQEDITVFTRQLATMMKAGLPLMQAFEIVARGHSNPSMTEMLMQVRSD 118

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G +L +S S+  +         F   +    + GG L   L  L+      + +K K
Sbjct: 119 VEQGSALGKSFSKYPK-----YFDRFYCNLVSAGESGGVLESLLDKLAVYKEKTQAIKKK 173

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           V+       A   +  +L F +   V          +  +  G   L +  + + +    
Sbjct: 174 VKTALTYPIAIIVVAIALIFIMMMFVLPAFKEVYANMGAELPGLTQLVMNLSDLFVDYGW 233

Query: 179 MRLMINF 185
           + +++  
Sbjct: 234 IMIILLI 240


>gi|73542334|ref|YP_296854.1| type II secretion system protein [Ralstonia eutropha JMP134]
 gi|72119747|gb|AAZ62010.1| type II secretion system protein [Ralstonia eutropha JMP134]
          Length = 323

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 74/166 (44%), Gaps = 4/166 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + H + +R     ++FP+ +D++   V AGL +  A+  +  +       +  E + ++ 
Sbjct: 157 LSHKVAERQRAVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLL 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S  +++S +     +++V  F++++    + G +L ++L  LS +LR ++ M+A
Sbjct: 217 ELRSGFSKEKALSNLSLRTGVEDVDKFASMLIQADRFGTSLGDSLRVLSDMLRTKRRMRA 276

Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162
           + QA  +        I    P  +  L+         VL+    G 
Sbjct: 277 EEQAAKIALKLLFPLIFTIFPSLLLVLLGPAFIQIYRVLLPTMAGQ 322


>gi|332970974|gb|EGK09948.1| hypothetical protein HMPREF9374_2751 [Desmospora sp. 8437]
          Length = 306

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 66/158 (41%), Gaps = 2/158 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   +KR  +   + P+ +D++  +++AG+ +  A+   V  ++ P+  E  R+ +   
Sbjct: 143 VKFKAQKRQEEIQYELPDFMDMMSITLQAGMALDTALDYYVSTNNGPLSEEIARMNQEIS 202

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+    +   ++      E+      +     LG  +SE  A  +  +R+ +  KAK Q
Sbjct: 203 FGVQRETAYRALIDRTDSTELETLVQSMIQAHNLGTPISETFALQAMEMRNMRAEKAKEQ 262

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158
           A   E K SA     +   +  LV+      +     D
Sbjct: 263 AGKSEPKISAVAGLVITPSIMLLVFGAF--ILKFFFTD 298


>gi|260431089|ref|ZP_05785060.1| type II/IV secretion system protein, TadC subfamily [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414917|gb|EEX08176.1| type II/IV secretion system protein, TadC subfamily [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 327

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 73/158 (46%), Gaps = 4/158 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   +++R       FP+ LD+++  V AG  +  A+  +  +       +  EF  V  
Sbjct: 165 ITRRVEERKEAITAGFPDTLDLMLVCVEAGQSLDQAIVRVASEMKSSYPDIAQEFEIVAY 224

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G   ++ +        +Q+VS F TV+   +  G ++++AL   +  +RD++ M+A
Sbjct: 225 EMKAGKDKNQVLRDFGTRCGVQDVSSFVTVMIQSATFGTSIADALRVYAGEMRDKRVMRA 284

Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154
           +  A  +  K + A ++ ++P  +  LV  ++ G M  
Sbjct: 285 EEAANKLPTKMTLATMMLTVPPLLIILVGPSAKGIMEF 322


>gi|134299964|ref|YP_001113460.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
 gi|134052664|gb|ABO50635.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
          Length = 310

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 69/155 (44%), Gaps = 2/155 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I+ R  +     P+ALD++  SV AGL    A+  +  ++   +  EF  +++  H
Sbjct: 153 LNSRIRNRKTQVEKSLPDALDLLTVSVEAGLGFDGALMKVAEKTKGIMADEFILMLQECH 212

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G    E++  M   + + ++S F   I +   LG ++   L   S+ +R ++  K +  
Sbjct: 213 MGKPRREALRDMATRLDVDDLSSFCGSIILADTLGISIGNVLRTQSQQMRQKRRQKTEEL 272

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           A+    K    ++  +   +  ++    P  + ++
Sbjct: 273 AMKAPIKMLFPMVFFIFPAIFVIL--LGPAALQIM 305


>gi|253995967|ref|YP_003048031.1| type II secretion system protein [Methylotenera mobilis JLW8]
 gi|253982646|gb|ACT47504.1| type II secretion system protein [Methylotenera mobilis JLW8]
          Length = 407

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 51/167 (30%), Gaps = 6/167 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   +++G+P+  +  ++    S+  V      +      G SLS +  +
Sbjct: 65  DKDITLFTRQLATMMKSGVPLLQSFDIVGKGHSNPAVAKLLGDIKSDVETGSSLSAAFRK 124

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    +  G L   L  L+      + +K+K+++      +   
Sbjct: 125 YPL-----YFDALFCNLISAGEQAGILDTLLDRLATYKEKIQAIKSKIKSALFYPVSIIV 179

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +   +   +   V        +    D  G  L+ +A +   +    
Sbjct: 180 VAFIITAVIMIFVVPAFKELFSSFGADLPGPTLVVMAISEFFVNWWW 226



 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 43/142 (30%), Gaps = 11/142 (7%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLS 66
           R A            +     AG+P+ +A+  + G S + V     +R+      G SL+
Sbjct: 268 RKATIAR----FARTMATMFSAGVPLVEALDSVAGASGNRVYYDATKRIQSEISTGTSLT 323

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++         +        ++   +  G L   L  ++       +   +  +  ME 
Sbjct: 324 VAMQNA------EVFPNMVLQMTAIGEESGALDSMLGKVADFYEGEVDDAVEALSSLMEP 377

Query: 127 KASAWIIGSLPFCVSTLVYFTS 148
                +   +   V  L     
Sbjct: 378 IIMVVLGVLIGGLVVALYLPIF 399


>gi|118589708|ref|ZP_01547113.1| hypothetical protein SIAM614_04690 [Stappia aggregata IAM 12614]
 gi|118437794|gb|EAV44430.1| hypothetical protein SIAM614_04690 [Stappia aggregata IAM 12614]
          Length = 325

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 58/159 (36%), Gaps = 4/159 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +K+ I KR       +P+ALD+++  V +G+ + +    +  +    S  +  E      
Sbjct: 166 LKNKIDKRKLTIQRAWPDALDLMLICVESGMSIEEGFRRVAEEVGVQSVELAEELSLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   + +   +  V      +    + G  +  AL  ++   R+++   A
Sbjct: 226 ELSYLSDRRIAYENLAKRTGVDGVKNVMMALIQAERYGTPVGTALRTMADDTREQRMQMA 285

Query: 118 KVQALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A S+  K     I+  LP     ++       M+  
Sbjct: 286 EQKAASLPPKLTVPMIMFFLPVLFFIIMGPAVIQVMDTF 324


>gi|298370054|ref|ZP_06981370.1| type IV pilin biogenesis protein PilC [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298281514|gb|EFI23003.1| type IV pilin biogenesis protein PilC [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 413

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 67/187 (35%), Gaps = 9/187 (4%)

Query: 1   MKHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIET 58
           +  +   R  +   +D       +   ++AGLP+  A  ++    S+  +     +V   
Sbjct: 59  VSKVKSTRKKRITQEDITVFTRQLATMMKAGLPLMQAFEIVARGHSNPSMTQMLMQVRAD 118

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G +L +S S+  +         F   +    + GG L   L  L+      + +K K
Sbjct: 119 VEQGSALGKSFSKYPK-----YFDRFYCNLVSAGETGGVLEGLLDKLAVYKEKTQAIKKK 173

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI--GI 176
           V+       A   +  +L F +   V        + +  +  G   + ++ +   +  G 
Sbjct: 174 VKTALTYPIAIMVVAVALIFVMMMFVLPAFGEVYSSMGAELPGLTQIVMSMSKFFVKYGW 233

Query: 177 MVMRLMI 183
           +++  +I
Sbjct: 234 VMIVAII 240


>gi|225174956|ref|ZP_03728953.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169596|gb|EEG78393.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
          Length = 306

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 67/145 (46%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K    +R  +     P+ LD+++ SV AGL    A+  +  +    +  E  + ++   
Sbjct: 148 VKRKATERQKEIQRSLPDMLDLLLVSVDAGLAFDMALKKVADKMPGELSREIGKALDEIR 207

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G +  E++  M     + ++S F + +    QLG N+++ L   +  +R R+ M+A+ +
Sbjct: 208 MGKTRIEALRSMANRTGVPDISTFISAVIQAEQLGSNIAKTLDVQANTMRQRRRMRAEEE 267

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145
           A+    K    ++  +   +  ++ 
Sbjct: 268 AMRAPIKMLFPLVFFIFPALFVVLL 292


>gi|188586923|ref|YP_001918468.1| type II secretion system protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351610|gb|ACB85880.1| type II secretion system protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 317

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 1/159 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   +  R  +     P  LD++  SV AGL    ++  +  + + P+  E +RV +   
Sbjct: 158 LSSKVNTRKNEIQRALPEFLDLLTVSVEAGLGFESSLKKVAEEGTGPLAVEIKRVTQEIS 217

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S  E++  +   + LQ++S F   I    QLG  +S  L   S+  R ++  +A+ Q
Sbjct: 218 MGKSRKEALIDLKERIDLQDLSTFINAIIQAEQLGVGISRVLKVESKEFRRKRRQRAEEQ 277

Query: 121 ALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158
           A+    K     I+   P     L+   +   M+ LI  
Sbjct: 278 AMKAPVKLLIPLILFIFPTIFIILLGPAALRIMDNLIGT 316


>gi|296129085|ref|YP_003636335.1| Type II secretion system F domain protein [Cellulomonas flavigena
           DSM 20109]
 gi|296020900|gb|ADG74136.1| Type II secretion system F domain protein [Cellulomonas flavigena
           DSM 20109]
          Length = 286

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 76/186 (40%), Gaps = 3/186 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   ++R A   + +P+ +D +   VRAGL + +AVA +  +    +R+ FR   E   
Sbjct: 95  VQGRARRRLASTRELWPDVVDHLASGVRAGLSLPEAVAQLGDRGPAELRAPFRAFAEDYR 154

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKV 119
                ++S+  +   +           + +     G +L   L  LS  LRD    + ++
Sbjct: 155 ATGRFTDSLDALKDRLADPVADRIIEALRLTRDVGGTDLGRLLRTLSTFLRDDLRTRGEL 214

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +A       +A +  + P+ V  ++  T P  +    + P G  +L   AA  +    +M
Sbjct: 215 EARQSWTVYAARMAVAAPWVVLAML-ATRPEAIRA-YDSPAGAAVLLAGAASSVAAYRLM 272

Query: 180 RLMINF 185
             +   
Sbjct: 273 LRVARL 278


>gi|221633000|ref|YP_002522225.1| type II secretion system protein [Thermomicrobium roseum DSM 5159]
 gi|221157259|gb|ACM06386.1| type II secretion system protein [Thermomicrobium roseum DSM 5159]
          Length = 303

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 67/156 (42%), Gaps = 1/156 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I +R        P+A+D++V SV AGL    A+  +V +  + +  EF R +    
Sbjct: 147 LSRRIAQRKRAIQRALPDAIDLLVISVEAGLGFDQALLRVVEKWDNELTREFARTLSEMR 206

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+   +++  + R + + +++ F   +    QLG ++S+ L   +  +R R+  +A+  
Sbjct: 207 MGIPRRQALRDLARRVNVDDLNVFIASLVQADQLGVSISQVLRAQANQMRLRRRQRAQEL 266

Query: 121 ALSMEAKA-SAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           A     K     +    P     ++    P  +   
Sbjct: 267 AHKAPIKMIFPMVFLIFPALYVVILGPAIPRIVEAF 302


>gi|187479015|ref|YP_787039.1| type IV pilus assembly protein [Bordetella avium 197N]
 gi|115423601|emb|CAJ50139.1| putative type IV pilus assembly protein [Bordetella avium 197N]
          Length = 305

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 80/184 (43%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     +R  + +   P+ +D +VR +  G  V+ A    +    DP+    +R      
Sbjct: 120 IWRQAGERRQRMIKQLPDFIDGVVRLITIGNSVNAAFQGAMTSIDDPLLEVLQRAEALMR 179

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L  ++ ++ R   LQE+   S+VIS+  + GG     L  ++  +RD +  + ++ 
Sbjct: 180 SGKDLDSALLKVSRQYGLQELYLVSSVISLALRFGGRSDLVLERMAAFMRDLELAREELI 239

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E + S WI+  LP  +   +   +      +  DP G  +L   A   ++G  ++ 
Sbjct: 240 ALSAEVRMSVWILSLLPIGLGLFIIVFNNDLFMGMWRDPLGFKMLIGGAMLQVVGTYLLF 299

Query: 181 LMIN 184
            M  
Sbjct: 300 RMAR 303


>gi|197106463|ref|YP_002131840.1| Flp pilus assembly protein TadC [Phenylobacterium zucineum HLK1]
 gi|196479883|gb|ACG79411.1| Flp pilus assembly protein TadC [Phenylobacterium zucineum HLK1]
          Length = 320

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 69/161 (42%), Gaps = 5/161 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +K+ I+KR+ K     P+ALD+ V    AGL +  A+A +  +   ++  +  E      
Sbjct: 160 LKNAIQKRSLKIQRALPDALDLFVICAEAGLSLDAALARVSREIGPAAPELADELGLTAV 219

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    E++  + R +   +V      +    + G  L++AL  L+   RD + MKA
Sbjct: 220 ELGFLPDRREALLNLTRRVAAPQVRGLVNTLVQTEKYGTPLAQALRVLAAEFRDTRMMKA 279

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158
           + +A  + A  +  +I  +   +  ++    P  + VL   
Sbjct: 280 EEKAARLPATLTVPMIAFILPPLFVVL--IGPAIVQVLTTS 318


>gi|297192377|ref|ZP_06909775.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197723022|gb|EDY66930.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 296

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 60/146 (41%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  I +R        P+ LD++   V AGL    A+  +  + + P   E R  +    
Sbjct: 135 LRAAIARRRDDIERTLPDFLDVLAVVVSAGLGFRQALERVAEKYAGPWSDELRITLRQMD 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+   E+  ++ R    ++VS F + +    +LG  + + L  ++  +R      A+ +
Sbjct: 195 MGMGRREAFEQLRRRNESEQVSMFVSALQQGEELGAPIVDTLIQIANDMRRTDAQNARRK 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146
           A     KA+  +   +      L+  
Sbjct: 255 AAKAVPKATLIVTSFMLPGTMILIVA 280


>gi|295395665|ref|ZP_06805857.1| integral membrane protein [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971481|gb|EFG47364.1| integral membrane protein [Brevibacterium mcbrellneri ATCC 49030]
          Length = 297

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 65/143 (45%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR     D  P+ LD++  +V AGL    A+A +  ++  P+  E   V+   ++G ++
Sbjct: 144 RKRQEAIEDSLPDFLDVLAVTVSAGLSFRSAIAKVTERTQGPLADELNTVLHQLNMGETV 203

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ++ S + +    + +  F T +    +LG  L++ LA ++  +R     +A+ +A    
Sbjct: 204 YDAFSALRKRTTSESLDSFITTLLQAEELGAPLADTLATIALDMRQTTAQRARQKAAKAS 263

Query: 126 AKASAWIIGSLPFCVSTLVYFTS 148
            K +  +   +      L+  + 
Sbjct: 264 PKIAGVVTIIMVPGTMALIMVSV 286


>gi|16127170|ref|NP_421734.1| hypothetical protein CC_2940 [Caulobacter crescentus CB15]
 gi|221235971|ref|YP_002518408.1| tyrosine phenol-lyase [Caulobacter crescentus NA1000]
 gi|13424566|gb|AAK24902.1| hypothetical protein CC_2940 [Caulobacter crescentus CB15]
 gi|220965144|gb|ACL96500.1| tyrosine phenol-lyase [Caulobacter crescentus NA1000]
          Length = 362

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 65/157 (41%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + ++ +KR    +  FP+ALD+++  V +G+ +  A+  +  +   SS  +  E   +  
Sbjct: 203 ISNVAQKRRESIVAAFPDALDLLLICVESGMSIEAAIQKVGAEVGSSSMELAEELSLLTA 262

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   + R      +   +T +    + G  L  AL  +++  R+ +   A
Sbjct: 263 ELSYLPDRRLAYENLARRTNHPGIKSVATAMIQAERYGTPLGTALRVMAKENRELRLSAA 322

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           + +A ++ A+ +  +I      +  ++    P  M V
Sbjct: 323 EKKAAALPAQLTVPMILFFLPVLFIMI--LGPAIMKV 357


>gi|320161469|ref|YP_004174693.1| putative bacterial type II secretion system protein [Anaerolinea
           thermophila UNI-1]
 gi|319995322|dbj|BAJ64093.1| putative bacterial type II secretion system protein [Anaerolinea
           thermophila UNI-1]
          Length = 319

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 71/163 (43%), Gaps = 2/163 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I +R  +     P+ALD++   V AGL    A+A +  +    +   F RVI+   
Sbjct: 158 LTSKISRRQKEIRKSMPDALDLLTICVEAGLGFDAAMAKVAEKWESELSLAFARVIQEIQ 217

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +  +++  M   + + E++ F   +    QLG ++++ L   S  +R R+   A+ +
Sbjct: 218 LGKTRRDALRDMAERIGIPEMTSFVAAVIQSEQLGVSMAKVLRIQSDQMRVRRRQAAEEE 277

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
           A     K    +   +   +  ++   +P  + ++ +   G  
Sbjct: 278 AHKAPVKMLIPMALLIFPSL--MIVLMTPAALRLMNSALAGMF 318


>gi|207739455|ref|YP_002257848.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609]
 gi|206592831|emb|CAQ59737.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609]
          Length = 319

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 82/181 (45%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             ++   + +   P  LD +VR +  G  V  A       +  P+R+      + Q  G 
Sbjct: 137 RTRRMKERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLALTTQLQRAGK 196

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L  ++  + +   + E+   S+V+ +  + GG     +   +  +RDR+  + ++ ALS
Sbjct: 197 DLDAAVLAVGQQYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLALS 256

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAWI+G LP  V  ++   +  Y+  +  DP G ML+  A    ++G +++  + 
Sbjct: 257 AETRLSAWILGLLPVVVGGIIIMFNATYVMSMWRDPAGKMLMMAAFGLEVMGSLMLARLA 316

Query: 184 N 184
            
Sbjct: 317 K 317


>gi|110679391|ref|YP_682398.1| TadC family type II/IV secretion system protein [Roseobacter
           denitrificans OCh 114]
 gi|109455507|gb|ABG31712.1| type II/IV secretion system protein, TadC subfamily, putative
           [Roseobacter denitrificans OCh 114]
          Length = 355

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 71/165 (43%), Gaps = 3/165 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++  +  R  +    FP++LD+++  V AG  +   +  +  +   S   +  EF  V  
Sbjct: 191 VRRRVDARKDEITRGFPDSLDMMLVCVEAGQSLDQCIVRVSKELHASYPALAQEFDVVAY 250

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G   +  ++       +Q+VS F TV++   Q G +++EAL   +  +RD++ M+A
Sbjct: 251 EMKAGKDKTTVLNDFGERCGVQDVSSFVTVLNQSQQFGTSIAEALRVYAEEMRDKRVMRA 310

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162
           +  A  +  K +   +      +  ++   S   +  L N   G 
Sbjct: 311 EEAANKLPTKMTLATMMLTVPPLLIILVGPSVHGITQLGNLGAGQ 355


>gi|260220289|emb|CBA27679.1| Type IV pilus assembly protein tapC [Curvibacter putative symbiont
           of Hydra magnipapillata]
          Length = 405

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 59/182 (32%), Gaps = 10/182 (5%)

Query: 3   HLIKKRTAKFL----DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIE 57
            + K+R          D       +   ++AG+P+  A  ++   + +P V      +  
Sbjct: 51  KIKKRRMRSGKSIKPKDLAIFTRQLATMMKAGVPLLQAFDIVGRGNPNPSVTKLLSDIRS 110

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G SLS +  +                +    +  G L + L  L+  +   + +K+
Sbjct: 111 DVETGTSLSAAFRKYPL-----YFDNLYCNLVEAGESAGILDQLLDRLAVYMEKTEAIKS 165

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           K+++  M   +   +   +   +   V  +          +     L  +A + + I   
Sbjct: 166 KIKSALMYPISVLVVAFVVVSVIMIFVIPSFKQVFTSFGGELPAPTLFVIALSEVFIEYW 225

Query: 178 VM 179
            +
Sbjct: 226 WL 227



 Score = 33.9 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 41/131 (31%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+ +A+  + G S + V     +++ +    G SL+ +++       
Sbjct: 275 WTRTLSTMFAAGVPLVEALDSVGGASGNIVYQYATQKIQQEVSTGTSLTAAMTNA----- 329

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G++   L   +       +      +  ME      +   + 
Sbjct: 330 -NLFPSMVLQMCAIGEESGSIDHMLGKAADFFEAEVDDMVAGISSLMEPIIIVVLGTIIG 388

Query: 138 FCVSTLVYFTS 148
             V ++     
Sbjct: 389 GIVVSMYLPIF 399


>gi|254780721|ref|YP_003065134.1| pilus component protein [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040398|gb|ACT57194.1| pilus component protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 329

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 64/162 (39%), Gaps = 4/162 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           + +L++KR +     +P+ALD+++  V +G+ +  A+  +          +  E    I 
Sbjct: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                 +   +         +  V   +  +    + G ++ ++L  L    R  + M+A
Sbjct: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287

Query: 118 KVQALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158
           + +A S+  K     II  LP  +  ++       ++ + + 
Sbjct: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329


>gi|317472142|ref|ZP_07931474.1| hypothetical protein HMPREF1011_01824 [Anaerostipes sp. 3_2_56FAA]
 gi|316900546|gb|EFV22528.1| hypothetical protein HMPREF1011_01824 [Anaerostipes sp. 3_2_56FAA]
          Length = 259

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 75/193 (38%), Gaps = 7/193 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-------VRSEFRR 54
           +   K R  +   +F   L  +  S+ AG  + +AV                 +  E   
Sbjct: 67  REERKMRIRQSRLEFKEMLLSVYNSLSAGYSLENAVRAARDDMRAVNGDKKSVLEQELSL 126

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           V     +   +   + +M   + + E S F+ V+ +  + GGNL + +      +  +  
Sbjct: 127 VCAGLEVNQPIEVLMDKMALRLGVDEASQFAQVLWIIKRNGGNLIQIIKKSVEHMNQKIQ 186

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +K ++  +    +    I+  +PF +   V   +PGY  VL + P G +L  V    ++ 
Sbjct: 187 VKEEILTMVSAKRMEQKIMSVMPFFILLYVRLMNPGYFQVLYDSPGGVILSTVCLIVLVA 246

Query: 175 GIMVMRLMINFDV 187
             M  + ++  +V
Sbjct: 247 AGMWAKKIVEIEV 259


>gi|292491527|ref|YP_003526966.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
 gi|291580122|gb|ADE14579.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
          Length = 320

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 69/158 (43%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++ LIKKR  +  + FP+ LD+++    AGL ++ A+  +  +   S   +  E   V  
Sbjct: 159 LERLIKKRQRQIYNGFPDVLDLLITCTEAGLGLNAALKRVAEECAVSHPVLSGELTLVNM 218

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G++  E++        ++E+  F   +S   + G ++++ L   S   RD++  +A
Sbjct: 219 EIRAGVNRVEALKNFSARAGIEEIHSFVAFLSQSLRFGTSIADTLRIYSDEFRDKRMQRA 278

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  A  M  K    +I  +       +    P  + VL
Sbjct: 279 EEMAAKMGTKMIFPLIFCILPS--FFLVAIGPAVLGVL 314


>gi|89100216|ref|ZP_01173083.1| hypothetical protein B14911_20190 [Bacillus sp. NRRL B-14911]
 gi|89085066|gb|EAR64200.1| hypothetical protein B14911_20190 [Bacillus sp. NRRL B-14911]
          Length = 312

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 62/148 (41%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   KKR  +   D P+ LD +  S++AG  +  A+  ++   S P++ EF   ++   
Sbjct: 148 VRSKAKKRQQQLRSDLPDFLDTVSVSLQAGSNMDSALKEVIKYFSGPIKEEFSIFLQEID 207

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+   ++   ++     +E   F   +   ++LG  ++  L + +  +R     + K +
Sbjct: 208 LGVPREKAYGGLLERNDNEEFQSFIKSLIQATRLGVPMASTLKSQAEDIRKISLEQVKEK 267

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTS 148
           A     K +      +   +  L+    
Sbjct: 268 AAKASPKVTMITSFIIAPLIMLLIIGLV 295


>gi|253996761|ref|YP_003048825.1| type II secretion system protein [Methylotenera mobilis JLW8]
 gi|253983440|gb|ACT48298.1| type II secretion system protein [Methylotenera mobilis JLW8]
          Length = 312

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 68/166 (40%), Gaps = 4/166 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           + H I  R  +  + FP+ALD+I+  V +GL +  A+A +  +       +  E   +  
Sbjct: 147 LSHRIDSRKREIFESFPDALDLIIVCVESGLGLDAALARVGEEMHVRSPTLGEELHLINL 206

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S   ++  +     ++EV     ++    + G N+S++L   +  LR ++ + A
Sbjct: 207 ELRAGSSRERALRNLALRTGVEEVDTLVAMLVQSDRFGTNISDSLRVHADSLRTKRRLLA 266

Query: 118 KVQALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162
           +  A  +  K     I    P  +  L+        N+L+    G 
Sbjct: 267 EEAAAKIAVKLLFPLIFFIFPSMLLVLLGPAFINIHNILLPTLAGQ 312


>gi|149200852|ref|ZP_01877827.1| type II/IV secretion system protein, TadC subfamily [Roseovarius
           sp. TM1035]
 gi|149145185|gb|EDM33211.1| type II/IV secretion system protein, TadC subfamily [Roseovarius
           sp. TM1035]
          Length = 326

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 75/159 (47%), Gaps = 4/159 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +    +KR  +  D FP++LD+++  + AG  +  ++  +  +       +  EF  V  
Sbjct: 164 VTKRQQKRQEEIQDGFPDSLDMMLVCIEAGQSMDQSIIRVASEMRASYPALADEFEIVAL 223

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G      +  M     +Q++S F TV+      G ++ EAL   +  +RD++ M+A
Sbjct: 224 QIKAGRDKPSVLGEMAERCGVQDISSFVTVLVQSQTFGTSIGEALRVYAGEMRDKRVMRA 283

Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A  +  K + A ++ ++P  +  LV  +  G M++L
Sbjct: 284 EEKANKLPTKMTLATMMLTVPPLLIILVGPSVLGIMDLL 322


>gi|167748318|ref|ZP_02420445.1| hypothetical protein ANACAC_03062 [Anaerostipes caccae DSM 14662]
 gi|167652310|gb|EDR96439.1| hypothetical protein ANACAC_03062 [Anaerostipes caccae DSM 14662]
          Length = 259

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 75/193 (38%), Gaps = 7/193 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-------VRSEFRR 54
           +   K R  +   +F   L  +  S+ AG  + +AV                 +  E   
Sbjct: 67  REERKMRIRQSRLEFKEMLLSVYNSLSAGYSLENAVRAARDDMRAVNGDKKSVLEQELSL 126

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           V     +   +   + +M   + + E S F+ V+ +  + GGNL + +      +  +  
Sbjct: 127 VCAGLEVNQPIEVLMDKMALRLGVDEASQFAQVLWIIKRNGGNLIQIIKKSVEHMNQKIQ 186

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +K ++  +    +    I+  +PF +   V   +PGY  VL + P G +L  V    ++ 
Sbjct: 187 VKEEILTMVSAKRMEQKIMSVMPFFILLYVRLMNPGYFQVLYDSPGGVILSTVCLIVLVA 246

Query: 175 GIMVMRLMINFDV 187
             M  + ++  +V
Sbjct: 247 AGMWAKKIVEIEV 259


>gi|99082191|ref|YP_614345.1| type II secretion system protein [Ruegeria sp. TM1040]
 gi|99038471|gb|ABF65083.1| hypothetical protein TM1040_2351 [Ruegeria sp. TM1040]
          Length = 323

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 67/149 (44%), Gaps = 3/149 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +   I++R       FP+ALD+++  V AG  +  ++  +  +   S   +  EF  V  
Sbjct: 164 ITRRIEERKQAITRAFPDALDMMLVCVEAGQSLDQSIVRVGKELQASYPELAEEFEIVAH 223

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G    + +  M     +Q+V+ F TV+   +  G ++++AL   +  +RD++ M+A
Sbjct: 224 EMKAGKEKDKVLRDMATRCGVQDVASFVTVMIQSAAFGTSIADALRVYAGEMRDKRVMRA 283

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF 146
           +  A  +  K +   +G     +  ++  
Sbjct: 284 EEAANKLPTKMTLATMGLTVPPLLAILIA 312


>gi|94309584|ref|YP_582794.1| type II secretion system protein [Cupriavidus metallidurans CH34]
 gi|93353436|gb|ABF07525.1| Bacterial type II secretion system protein, probably involved in
           Flp pilus synthesis [Cupriavidus metallidurans CH34]
          Length = 323

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 72/165 (43%), Gaps = 4/165 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   +  R     ++FP+ +D++   V AGL +  A+  +  +       +  E + ++ 
Sbjct: 157 LSRKVTARQRTVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLL 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S  +++S +     +++V  F++++    + G +L E+L  LS +LR ++ M+A
Sbjct: 217 ELRSGFSKEKALSNLSLRTGVEDVDKFASMLIQADRFGTSLGESLRVLSDMLRTKRRMRA 276

Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           + QA  +        I    P  +  L+         VL+    G
Sbjct: 277 EEQAAKIALKLLFPLIFTIFPTLLLVLLGPAFIQIYRVLLPTMTG 321


>gi|83747914|ref|ZP_00944946.1| TRANSMEMBRANE PILUS ASSEMBLY PROTEIN: TadB2 [Ralstonia solanacearum
           UW551]
 gi|83725447|gb|EAP72593.1| TRANSMEMBRANE PILUS ASSEMBLY PROTEIN: TadB2 [Ralstonia solanacearum
           UW551]
          Length = 308

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 82/181 (45%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             ++   + +   P  LD +VR +  G  V  A       +  P+R+      + Q  G 
Sbjct: 126 RTRRMKERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLALTTQLQRAGK 185

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L  ++  + +   + E+   S+V+ +  + GG     +   +  +RDR+  + ++ ALS
Sbjct: 186 DLDAAVLAVGQQYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLALS 245

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAWI+G LP  V  ++   +  Y+  +  DP G ML+  A    ++G +++  + 
Sbjct: 246 AETRLSAWILGLLPVVVGGIIIMFNATYVMSMWRDPAGKMLMMAAFGLEVMGSLMLARLA 305

Query: 184 N 184
            
Sbjct: 306 K 306


>gi|85859132|ref|YP_461334.1| flp pilus assembly protein [Syntrophus aciditrophicus SB]
 gi|85722223|gb|ABC77166.1| flp pilus assembly protein [Syntrophus aciditrophicus SB]
          Length = 317

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 73/158 (46%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           ++  I  R  K ++ FP+ALD++V  V AG+ +  A+  +  +      P+  EFR +  
Sbjct: 156 LRLKIGARKEKIMEGFPDALDLMVICVEAGMGLDQAINRVGEEMKLSCPPISDEFRTLNM 215

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G S  E++  M     L +V+   T++    Q G ++ +AL   S  +R ++  +A
Sbjct: 216 EMRMGKSRREALRNMANRTELDDVTSLVTLLIQTDQFGTSIGQALRVHSDSMRVQRRQRA 275

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A  +  K    +I  +   +  ++    P  + V 
Sbjct: 276 EEKAAKLPLKLLFPLIFFIFPSLFVVI--MGPAMIQVF 311


>gi|229825136|ref|ZP_04451205.1| hypothetical protein GCWU000182_00487 [Abiotrophia defectiva ATCC
           49176]
 gi|229790508|gb|EEP26622.1| hypothetical protein GCWU000182_00487 [Abiotrophia defectiva ATCC
           49176]
          Length = 245

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 79/192 (41%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55
           K LI+KR  +    F   L +I+ S++AG  +  A+     +          + +E   +
Sbjct: 54  KKLIEKRKNELSAQFIEFLQVIMSSLKAGTSLERAILSARERLYSLYNNDSLIITEIISM 113

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
             +  + + + + +    +   +++++ F+ V  V  + GGNL + + +  + + D+  M
Sbjct: 114 ESSLRMNIPVEDILYDFGKRSGIEDINQFAEVCKVSKRAGGNLIKVMDHTIKCIVDKNEM 173

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + ++QA     K  +  + ++   +   +  +    MN L     G +++    A     
Sbjct: 174 EREIQAFISGKKLESKFMTAILPAILLYMNISMADMMNSLYQGILGRLVMSGVLAGYGFC 233

Query: 176 IMVMRLMINFDV 187
            +    + +  V
Sbjct: 234 CLWFDKITDIKV 245


>gi|319761633|ref|YP_004125570.1| type ii secretion system f domain protein [Alicycliphilus
           denitrificans BC]
 gi|330823499|ref|YP_004386802.1| type II secretion system F domain-containing protein
           [Alicycliphilus denitrificans K601]
 gi|317116194|gb|ADU98682.1| Type II secretion system F domain protein [Alicycliphilus
           denitrificans BC]
 gi|329308871|gb|AEB83286.1| Type II secretion system F domain protein [Alicycliphilus
           denitrificans K601]
          Length = 405

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 57/182 (31%), Gaps = 11/182 (6%)

Query: 4   LIKKRT----AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIE 57
            IKKR      K    D       +   ++AG+P+  +  ++    ++  V      +  
Sbjct: 51  KIKKRRASGGKKIKPKDIALFTRQMATMMKAGVPLLQSFDIVGRGNTNASVTKLLNDIRA 110

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G SL+ +  +                +    +  G L   L  L+  +   + +K+
Sbjct: 111 DVETGTSLNAAFRKYPM-----YFDSLYCNLVEAGEAAGILEALLDRLATYMEKTEAIKS 165

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           K+++  M   +   +   +   +   V             D     LL +A +   +   
Sbjct: 166 KIRSALMYPISVLVVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLLVMAISEFFVAYW 225

Query: 178 VM 179
            +
Sbjct: 226 WL 227



 Score = 34.7 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 37/130 (28%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+ +A+  + G S + V       + T  +   +S   S        
Sbjct: 275 WTRTLSTMFAAGVPLVEALDSVGGASGNSVY-----AVATDRIQQEVSTGTSLTAAMGNA 329

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G++   L   +       +      +  ME     ++   +  
Sbjct: 330 NVFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDEMVAGLSSLMEPIIIVFLGTLIGG 389

Query: 139 CVSTLVYFTS 148
            V ++     
Sbjct: 390 IVVSMYLPIF 399


>gi|194288828|ref|YP_002004735.1| tad secretion system, secretion accessory protein [Cupriavidus
           taiwanensis LMG 19424]
 gi|193222663|emb|CAQ68666.1| Tad secretion system, secretion accessory protein [Cupriavidus
           taiwanensis LMG 19424]
          Length = 324

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 73/166 (43%), Gaps = 4/166 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   + +R     ++FP+ +D++   V AGL +  A+  +  +       +  E + ++ 
Sbjct: 157 LARKVSQRQRTVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLL 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S  ++++ +     +++V  F++++    + G +L E+L  LS +LR ++ M+A
Sbjct: 217 ELRSGFSKEKALTNLSLRTGVEDVDKFASMLIQADRFGTSLGESLRVLSDMLRTKRRMRA 276

Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162
           + QA  +        I    P  +  L+         VL+    G 
Sbjct: 277 EEQAAKIALKLLFPLIFTIFPSLLLVLLGPAFIQIYRVLLPTMAGQ 322


>gi|254429908|ref|ZP_05043615.1| Bacterial type II secretion system protein F domain [Alcanivorax
           sp. DG881]
 gi|196196077|gb|EDX91036.1| Bacterial type II secretion system protein F domain [Alcanivorax
           sp. DG881]
          Length = 306

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 73/182 (40%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +   +++     +  P  +D  +R + AG  +  ++      +    +    R+      
Sbjct: 119 RFRFQQQRRAIFESLPGIMDSTLRYMGAGRSLEASLLESFQDAPPVFQPLTFRLRSAVES 178

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G   +       R   +  +   S  +   ++ G ++   L  ++  LR ++ ++ +  A
Sbjct: 179 GRDYTGLFDDFARLYRVPSLVLVSIALRTSARFGSSIRPVLQQVANSLRSQQELRREFLA 238

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            + E + +A     LP  ++  +   +  Y +VL+    GH +L +A     IG++++  
Sbjct: 239 STAETRFTAGAFTLLPLGMAVYMMLINEKYADVLLRTDTGHTMLIIAGVLQGIGVVIIWR 298

Query: 182 MI 183
           M+
Sbjct: 299 MV 300


>gi|91786744|ref|YP_547696.1| type II secretion system protein [Polaromonas sp. JS666]
 gi|91695969|gb|ABE42798.1| type II secretion system protein [Polaromonas sp. JS666]
          Length = 405

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 51/167 (30%), Gaps = 6/167 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   ++AG+P+  +  ++   +    V      V      G SLS +  + 
Sbjct: 66  KDIAIFTRQLATMMKAGVPLLQSFDIVGRGNPNGSVTKLLNDVRTDVETGTSLSAAFRKY 125

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    +     +    +  G L   L  L+  +   + +K+K+++  M   +   +
Sbjct: 126 PL-----YFNALYCNLVEAGEAAGILESLLDRLAVYMEKTEAIKSKIKSALMYPISVVVV 180

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
              +   +   V             D     L  +A +   +    +
Sbjct: 181 AFVVVAVIMIFVIPAFKEVFTSFGADLPAPTLFVIAVSEFFVAYWWL 227



 Score = 35.5 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/131 (10%), Positives = 40/131 (30%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+ +A+  + G S + +      ++ +    G SL+ ++        
Sbjct: 275 WTRTLSTMFAAGVPLVEALDSVGGASGNSLYADATEKIQQEVSTGTSLTAAMGNA----- 329

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G++   L   +       +      +  ME     ++   + 
Sbjct: 330 -NLFPTMVLQMCAIGEESGSVDHMLGKAADFYEAEVDEMVAGLSSLMEPIIIVFLGTLIG 388

Query: 138 FCVSTLVYFTS 148
             V ++     
Sbjct: 389 GIVVSMYLPIF 399


>gi|188997645|ref|YP_001931896.1| type II secretion system protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932712|gb|ACD67342.1| type II secretion system protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 406

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 65/185 (35%), Gaps = 13/185 (7%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLS 66
           +     +D       +   + AG+ ++ A+ ++  Q  +P   E    V +    G+SLS
Sbjct: 62  KKKVKEEDLAIFARQLGAMIGAGIGIAQALEILSEQMPNPTLKEALINVKDDVITGMSLS 121

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+ +  +  P      F   +   ++  G L E L   +        ++ K+ + S   
Sbjct: 122 KSMQKHPKVFPP-----FLINLIAAAEESGKLDEILKRATIYYEKLAAIRRKIISASWYP 176

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-------AFMLIGIMVM 179
            A   I   +   + T V  T          +      + +            +IG  V+
Sbjct: 177 AAVVIIATVIVLGLLTFVVPTFAEIYASFGGELPLLTQILINISNSLKENILYVIGFFVI 236

Query: 180 RLMIN 184
            +++N
Sbjct: 237 FVIMN 241


>gi|299069495|emb|CBJ40764.1| Type II secretion system protein [Ralstonia solanacearum CMR15]
          Length = 308

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 83/182 (45%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +  ++   + +   P  LD +VR +  G  V  A       +  P+R+      + Q  G
Sbjct: 125 NRTRRMNERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLTSTTQLQRAG 184

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             L  ++  + +   + E+   S+V+ +  + GG     +   +  +RDR+  + ++ AL
Sbjct: 185 KDLDAAVLAVGQLYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLAL 244

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAWI+G LP  V  ++   +  Y+  +  DP G ML+  A    ++G +++  +
Sbjct: 245 SAETRLSAWILGLLPVVVGGIIIMVNAPYVMSMWRDPSGKMLMMAAFGLEVMGSLILARL 304

Query: 183 IN 184
             
Sbjct: 305 AK 306


>gi|300021859|ref|YP_003754470.1| type II secretion system protein F [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299523680|gb|ADJ22149.1| Type II secretion system F domain protein [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 326

 Score = 82.1 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 68/158 (43%), Gaps = 4/158 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           + + ++KR       FP+ALD+++  V++G+ V  A A +  + ++    +  E      
Sbjct: 167 ISNRVQKRQTSIKQAFPDALDMLLICVQSGMSVEAAFAKVGKEIANQSIELAEEMALTTA 226

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   + +   L  V   +T +    + G  + +AL  +++  R+ +  +A
Sbjct: 227 ELSYLQDRRQAYENLAKRTGLPGVKGVATALVQAERYGTPVGQALRTMAKENREIRQSEA 286

Query: 118 KVQALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           + +A ++  K     I+  LP     ++     GYM +
Sbjct: 287 ERKASALPPKLTVPMIVFFLPVLFIVILGPAGIGYMQM 324


>gi|237733160|ref|ZP_04563641.1| predicted protein [Mollicutes bacterium D7]
 gi|229383704|gb|EEO33795.1| predicted protein [Coprobacillus sp. D7]
          Length = 315

 Score = 82.1 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 79/188 (42%), Gaps = 2/188 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIET 58
           +    + +  +   +F   ++ I   +  G  + +A+  I+ +  +S  + +E   V + 
Sbjct: 128 VNKRAETKKEELTLEFLEKINEISAHLSVGKTIPNALDEIIKEQNTSQVLINELITVKQN 187

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            +LG  LS+S      ++ ++E+  F+  +SV  + GGN+ E L       + +  +K  
Sbjct: 188 LNLGYPLSKSFMLAYEHLQIEEIKTFAMTLSVYEETGGNIIEVLKANDNFFQSKIKIKNT 247

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            +      K S  +   +P     LV F +P +         G ++  +A +F+L GI +
Sbjct: 248 QKVYISSLKTSQKLTVGIPLGFIVLVIFINPSFFGDFYGTAVGELVGIIAISFLLFGIFL 307

Query: 179 MRLMINFD 186
              +    
Sbjct: 308 SNKIAKLK 315


>gi|163856390|ref|YP_001630688.1| hypothetical protein Bpet2079 [Bordetella petrii DSM 12804]
 gi|163260118|emb|CAP42419.1| putative membrane protein [Bordetella petrii]
          Length = 281

 Score = 82.1 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 101/176 (57%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           F    P AL  +  ++RAG+ VS A+  IV  S  P+  EF  ++  Q LG+S   +++R
Sbjct: 106 FEQQLPGALLALASALRAGVGVSTALRHIVDHSEPPLAQEFGLMLREQRLGVSFDAALAR 165

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           + + +P +  +  +  + V +  GGNL+E L  ++R LR+R  ++ KV+AL+ + +  AW
Sbjct: 166 LSQRVPSEASALVAAALRVATHTGGNLAETLDGIARTLRERLQLQGKVRALTAQGRLQAW 225

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           I+G+LP  ++ ++    P  M +L + P G  +L V A     G++++R +++ D+
Sbjct: 226 IVGALPLLLAAVLDRMEPDAMAILWHTPLGWAVLAVVAGLETAGVLLIRRIVDIDI 281


>gi|71906278|ref|YP_283865.1| type II secretion system protein [Dechloromonas aromatica RCB]
 gi|71845899|gb|AAZ45395.1| type II secretion system protein [Dechloromonas aromatica RCB]
          Length = 408

 Score = 82.1 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 49/167 (29%), Gaps = 6/167 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   +++G+P+  +  ++    S+  V      +      G SLS++  +
Sbjct: 68  DKDISLFTRQLATMMKSGVPLLQSFDIVGRGHSNPAVGKLLLDIKADVETGSSLSQAFRK 127

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    +  G L   L  L+        +K+K+++      A   
Sbjct: 128 YPLQ-----FDALYCNLVSAGEQAGILDTLLDRLASYKEKILAIKSKIKSALFYPVAILV 182

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +   +   +   V             D     L+ +A +   +    
Sbjct: 183 VAFIITAVIMIFVIPAFKEVFKGFGADLPAPTLIVIAISDFFVAYWW 229


>gi|254419878|ref|ZP_05033602.1| Bacterial type II secretion system protein F domain [Brevundimonas
           sp. BAL3]
 gi|196186055|gb|EDX81031.1| Bacterial type II secretion system protein F domain [Brevundimonas
           sp. BAL3]
          Length = 326

 Score = 82.1 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 69/164 (42%), Gaps = 5/164 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + + I KR    +  FP+ALD+++  V AG+ +  A+A +  +   SS  +  E   +  
Sbjct: 165 LTNRITKRRTSIMQAFPDALDLLLICVEAGMSIEAAIAKVSQEIGTSSIELAEELSLLSA 224

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   + +      V   +  ++     G  LS AL  +++  RD +   A
Sbjct: 225 ELSYLPDRRMAYENLGKRTNHPGVKSVAVAMTQAETYGTPLSSALRVMAKENRDLRLSAA 284

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           + +A ++ A+ +  +I      +  ++    P  +N++    +G
Sbjct: 285 EKKAAALPAQLTVPMILFFLPVLFIVI--LGPAILNIMDTMAKG 326


>gi|163745841|ref|ZP_02153200.1| type II/IV secretion system protein, TadC subfamily, putative
           [Oceanibulbus indolifex HEL-45]
 gi|161380586|gb|EDQ04996.1| type II/IV secretion system protein, TadC subfamily, putative
           [Oceanibulbus indolifex HEL-45]
          Length = 326

 Score = 82.1 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 70/162 (43%), Gaps = 3/162 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++  +  R  +    FP+ALD+++  V AG  +   +  +  +   S   +  EF  V  
Sbjct: 164 VRRRVDSRKEEITRGFPDALDMMLVCVEAGQSLDQCIVRVGRELRASYPALAEEFEMVAY 223

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G      ++ M     +Q+VS F TV+   +  G ++++AL   +  +RD++ M+A
Sbjct: 224 EMKAGKDRITVLNDMSERCGVQDVSSFVTVLIQSAAFGTSIADALRVYAEEMRDKRVMRA 283

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159
           +  A  +  K +   +G     +  ++   S   ++ L    
Sbjct: 284 EEAANKLPTKMTLATMGLTVPPLLIILIGPSAHGISQLGQMG 325


>gi|87199097|ref|YP_496354.1| type II secretion system protein [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87134778|gb|ABD25520.1| type II secretion system protein [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 335

 Score = 82.1 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 61/148 (41%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +++L+ KRT       P+ALD++V    AGL V  A + +  +   +   +  EF     
Sbjct: 171 IQNLVSKRTVAVRKGLPDALDLLVICAEAGLTVDAAFSRVARELGRAYPELGDEFALTAI 230

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +   + L  V    T +    + G  L+ AL  LS   R+ + M+A
Sbjct: 231 ELSFLTERRHAFENLAYRVDLDSVKGVVTTMIQTERYGTPLASALRVLSAEFRNERMMRA 290

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A  + A  +  +I  +   +  ++ 
Sbjct: 291 EEKAARLPAIMTIPLILFILPVLFIVIL 318


>gi|294676064|ref|YP_003576679.1| type II secretion system protein [Rhodobacter capsulatus SB 1003]
 gi|294474884|gb|ADE84272.1| type II secretion system protein [Rhodobacter capsulatus SB 1003]
          Length = 337

 Score = 82.1 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 70/159 (44%), Gaps = 4/159 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +   +  RT +  D FP+ALD+++  V AG  +   +  +  +   S   +  EF  V  
Sbjct: 172 VNQRVAARTQEIQDGFPDALDMLLVCVEAGQSLDQGIIRVSKELSSSYPALAEEFATVAH 231

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL     +        + +V+ F TV+    Q G +++EAL   +  +RD++ M+A
Sbjct: 232 EIKAGLDKPTVLRAFAERSGVSDVASFVTVMIQSQQFGTSIAEALRLYAADMRDKRIMRA 291

Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  A  +  K +   ++ ++P  +  LV  +    M   
Sbjct: 292 EEAANKIPTKMTLGTMMFTVPPLLIILVGPSVHDMMENF 330


>gi|163733537|ref|ZP_02140980.1| type II/IV secretion system protein, TadC subfamily, putative
           [Roseobacter litoralis Och 149]
 gi|161393325|gb|EDQ17651.1| type II/IV secretion system protein, TadC subfamily, putative
           [Roseobacter litoralis Och 149]
          Length = 327

 Score = 82.1 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 71/165 (43%), Gaps = 3/165 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++  +  R  +    FP++LD+++  V AG  +   +  +  +   S   +  EF  V  
Sbjct: 163 VRRRVDTRKDEITRGFPDSLDMMLVCVEAGQSLDQCIVRVSKELHASYPALAQEFDVVAY 222

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G   +  ++       +Q+VS F TV++   Q G +++EAL   +  +RD++ M+A
Sbjct: 223 EMKAGKDKTTVLNDFGERCGVQDVSSFVTVLNQSQQFGTSIAEALRVYAGEMRDKRVMRA 282

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162
           +  A  +  K +   +      +  ++   S   +  L N   G 
Sbjct: 283 EEAANKLPTKMTLATMMLTVPPLLIILVGPSVHGITQLGNLGAGQ 327


>gi|121603678|ref|YP_981007.1| type II secretion system protein [Polaromonas naphthalenivorans
           CJ2]
 gi|120592647|gb|ABM36086.1| type II secretion system protein [Polaromonas naphthalenivorans
           CJ2]
          Length = 405

 Score = 82.1 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 58/185 (31%), Gaps = 11/185 (5%)

Query: 1   MKHLIKKRT----AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRR 54
           +   IKKR           D       +   ++AG+P+  +  ++   +    V      
Sbjct: 48  LASKIKKRRMRSGKAIKPRDIAIFTRQLATMMKAGVPLLQSFDIVGRGNPNGSVTKLLND 107

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           V      G SLS +  +          +     +    +  G L   L  L+  +   + 
Sbjct: 108 VRTDVETGTSLSGAFRKYPM-----YFNALYCNLVEAGEAAGILESLLDRLAIYMEKTEA 162

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +K+K+++  M   +   +   +   +   V        +    +     L+ +A +   +
Sbjct: 163 IKSKIKSALMYPASVVVVAFVVVAVIMIFVIPAFKQVFSSFGAELPAPTLIVMAISEFFV 222

Query: 175 GIMVM 179
               +
Sbjct: 223 AYWWL 227



 Score = 34.3 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 14/131 (10%), Positives = 40/131 (30%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+ +A+  + G S + +      ++ +    G SL+ ++        
Sbjct: 275 WTRTLSTMFAAGVPLVEALDSVGGASGNSLYADATEKIQQEVSTGTSLTAAMGNA----- 329

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G++   L   +       +      +  ME     ++   + 
Sbjct: 330 -NLFPTMVLQMCAIGEESGSVDHMLGKAADFYEAEVDEMVAGLSSLMEPIIIVFLGTLIG 388

Query: 138 FCVSTLVYFTS 148
             V ++     
Sbjct: 389 GIVVSMYLPIF 399


>gi|126725975|ref|ZP_01741817.1| type II/IV secretion system protein, TadC subfamily
           [Rhodobacterales bacterium HTCC2150]
 gi|126705179|gb|EBA04270.1| type II/IV secretion system protein, TadC subfamily
           [Rhodobacterales bacterium HTCC2150]
          Length = 318

 Score = 82.1 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 61/148 (41%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +      R    +  FP++LD+++  V +G  +  A+  +  +       +  EF  V  
Sbjct: 160 VTRRRGTRQKNIIQAFPDSLDLMLICVESGQSLDQAIIKVSKEIRAGYPDLADEFELVAY 219

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G      +        + ++S F +V+   +  G  ++EAL   S  +RD++ M+A
Sbjct: 220 EIKAGKDKKRVLKDFSERCGVPDISSFVSVLIQAATYGTPIAEALRAYSAEMRDKRVMRA 279

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +   +      +  ++ 
Sbjct: 280 EEKANTLPVKMTLGTMVFCLPSLLIILV 307


>gi|241760203|ref|ZP_04758299.1| pilin biogenesis protein [Neisseria flavescens SK114]
 gi|241319314|gb|EER55779.1| pilin biogenesis protein [Neisseria flavescens SK114]
          Length = 413

 Score = 82.1 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 64/187 (34%), Gaps = 7/187 (3%)

Query: 1   MKHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIET 58
           +  +   R  +   +D       +   ++AGLP+  A  ++    S+  +     +V   
Sbjct: 59  ISKVKTARKRRITQEDITVFTRQLATMMKAGLPLMQAFEIVARGHSNPSMTEMLMQVRSD 118

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G +L +S S+  +         F   +    + GG L   L  L+      + +K K
Sbjct: 119 VEQGSALGKSFSKYPK-----YFDRFYCNLVSAGESGGVLESLLDKLAVYKEKTQAIKKK 173

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           V+       A   +  +L F +   V          +  +      L ++ + + +    
Sbjct: 174 VKTALTYPIAIIVVAIALIFIMMMFVLPAFKEVYANMGAELPSLTQLVMSLSDLFVDYGW 233

Query: 179 MRLMINF 185
           + +++  
Sbjct: 234 IMIILLI 240


>gi|227494921|ref|ZP_03925237.1| type II secretion system protein [Actinomyces coleocanis DSM 15436]
 gi|226831373|gb|EEH63756.1| type II secretion system protein [Actinomyces coleocanis DSM 15436]
          Length = 291

 Score = 82.1 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 81/187 (43%), Gaps = 3/187 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  ++KR   F   +P+ +D ++ +VRAG+ + +AV  +     +  R+ F+       
Sbjct: 102 LRARLQKRQQLFAGAWPDIVDSLLTAVRAGVSLPEAVVQLSHSGPEITRTYFQHFAMEYR 161

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKV 119
                  +++ +      +       VI +  ++GG+ +   L +LS ++R+   +  ++
Sbjct: 162 SSGKFDVALTSLQSNFADKNSKRVFEVIRLGREVGGSEMGNILRDLSAMMRENLRISGEI 221

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           QA       +A +  + P+ V  ++   +    +   +   G M+L +          +M
Sbjct: 222 QARQSWTVNAARLAVAAPWIVLLMISMRTDAASS--YSTTNGMMILALGGIACTFAYWLM 279

Query: 180 RLMINFD 186
           + + +FD
Sbjct: 280 QKLGSFD 286


>gi|148253056|ref|YP_001237641.1| putative Type II secretion system protein [Bradyrhizobium sp.
           BTAi1]
 gi|146405229|gb|ABQ33735.1| putative Type II secretion system protein precursor [Bradyrhizobium
           sp. BTAi1]
          Length = 329

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 57/184 (30%), Positives = 103/184 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    K+    F+D FP+A+D + R +RAGLP++ A+  +    S PV   F  + +   
Sbjct: 141 LSREQKQTERMFVDLFPDAVDTVARMLRAGLPITVAMRTVAVDGSPPVSRVFGLIADELR 200

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E++    R + L +  FF+  +++Q   GGNL+  L +LS I+R R+  + K +
Sbjct: 201 IGVPLEEALDTNSREIGLPDFRFFAVAMTLQFATGGNLTATLESLSDIIRKRRAARLKAK 260

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A + E + +A+ +G++P   +  +    P Y+  L  DPRGH++L +A A +L+  + MR
Sbjct: 261 AATGEIRLTAYTLGAIPILTTGALLVVQPRYLTPLWTDPRGHLILVLAGALLLLSFLTMR 320

Query: 181 LMIN 184
            M+ 
Sbjct: 321 KMMR 324


>gi|212224827|ref|YP_002308063.1| hypothetical protein TON_1676 [Thermococcus onnurineus NA1]
 gi|212009784|gb|ACJ17166.1| conserved hypothetical membrane protein [Thermococcus onnurineus
           NA1]
          Length = 355

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 72/181 (39%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K + K+R  +     P AL  +   + AG+ +S+A+  +       +  EF  ++     
Sbjct: 169 KMMWKRRVVEVERAMPYALRHMASLLSAGVGISEAILSVARADYGVISEEFELILRDMRT 228

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S  E++++    M  + VS     I    + GGNLSE L  ++        MK     
Sbjct: 229 GSSFEEALTKFDEKMSSENVSRVVKQILRAVKFGGNLSEVLYKMAEDFAFEYRMKLIEYV 288

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
             +   A  ++  ++      +V   +   M   +  P   + + +  AF  +  +++ +
Sbjct: 289 QRVNGIAFIYMFITIVMPTMFVVGILAGSVMAQSLIMPPETLAVILLFAFPALSFIIVNM 348

Query: 182 M 182
           +
Sbjct: 349 I 349


>gi|197123313|ref|YP_002135264.1| type II secretion system protein [Anaeromyxobacter sp. K]
 gi|196173162|gb|ACG74135.1| type II secretion system protein [Anaeromyxobacter sp. K]
          Length = 306

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 66/165 (40%), Gaps = 4/165 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++  ++ R  +     P+ALD++V  V AGL +  A+  +  +   +   +  E R V  
Sbjct: 140 LRSRVQARQTQLDRSLPDALDLLVTCVEAGLGLDSALQRVSDEVALAHPLLSKELRLVFL 199

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+    +  RM       E+   S  ++     G ++  AL   +  +R R+  +A
Sbjct: 200 EVKAGIPRIAAFRRMAERTGAPELRSLSATLAQTELFGTSVGAALRIQAEGIRIRRMHRA 259

Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           + +A  +  K S   ++  LP   + ++        + L     G
Sbjct: 260 EEKAAYVSVKMSLPLVLCILPCVFAVVLGPAVVNMADRLFPLLGG 304


>gi|291548759|emb|CBL25021.1| Flp pilus assembly protein TadB [Ruminococcus torques L2-14]
          Length = 251

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 79/186 (42%), Gaps = 6/186 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRRVIETQHL 61
           +  +F   F +++  +  +++AG  V +A+                +R E+ +++    L
Sbjct: 66  KEQEFRRQFRDSIQTMAGALKAGYSVENAIRETNRDLIGMYDANTRIRKEYGQMVRRLDL 125

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
            LS+   ++     +  ++V+ F TV +     GG+    + + +R + ++ + + ++Q 
Sbjct: 126 NLSVVTVLNEFAAEVKQEDVTNFITVYAAAKVSGGDSIAIIRDAARTIGEKIDTEREIQT 185

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           +    K    I+  +PF +   +  T   +++VL     G +++ +     L        
Sbjct: 186 MLAAKKLEFEIMSVIPFIMILYMKMTFGEFLSVLYGTWTGCIVMSICLVLYLGAYRFGWR 245

Query: 182 MINFDV 187
           ++  ++
Sbjct: 246 LLQIEI 251


>gi|222147177|ref|YP_002548134.1| component of type IV pilus [Agrobacterium vitis S4]
 gi|221734167|gb|ACM35130.1| component of type IV pilus [Agrobacterium vitis S4]
          Length = 326

 Score = 81.7 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 57/148 (38%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + + I KR       +P+ALD+++  V +G+ +  A+  +  +    S  +  E      
Sbjct: 168 ISNRITKRQHSIRRAWPDALDLMLICVESGMSMEAAMRRVADEMASQSPALAEEMVLTTA 227

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +     L+ V      +    + G  + +AL  L++  RD +   A
Sbjct: 228 ELSFLQDRRTAYENLGNRTQLEIVKSVCQALIQAERYGTPIGQALRVLAQEGRDERMNAA 287

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 288 EKKAAALPPKLTVPMILFFLPVLVAVIL 315


>gi|154507637|ref|ZP_02043279.1| hypothetical protein ACTODO_00118 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797271|gb|EDN79691.1| hypothetical protein ACTODO_00118 [Actinomyces odontolyticus ATCC
           17982]
          Length = 292

 Score = 81.7 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 65/177 (36%), Gaps = 3/177 (1%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
                 +P  +D +V  VRAG  +   +  +  +   PVR  F               ++
Sbjct: 107 KTVRAAWPEVIDAMVSGVRAGTALPQVLCDLAEEGPVPVRFAFEAFSRDYSANGRFELAL 166

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
             M   +           + +     G +L+  L +L+ +LR+   ++ +++A       
Sbjct: 167 DTMKETVADPVADRIVEALRIARSVGGADLTRLLQDLASLLREDARVRGELEARQSWTVG 226

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           +A +  + P+ V  L+          + N P G  +L   A   +I  ++M+ M   
Sbjct: 227 AARLGLAAPWVVLLLLSGGGAN--AHVWNSPGGVAVLCSGAGICVIAYLIMKAMGRL 281


>gi|332526519|ref|ZP_08402631.1| pilus tip-associated protein [Rubrivivax benzoatilyticus JA2]
 gi|332110787|gb|EGJ10964.1| pilus tip-associated protein [Rubrivivax benzoatilyticus JA2]
          Length = 410

 Score = 81.7 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 56/182 (30%), Gaps = 10/182 (5%)

Query: 1   MKHLIKKR----TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRV 55
           +  + K+R     +    D       +   ++AG+P+  A  ++    S+  +      +
Sbjct: 54  VTKVKKRRTSGGRSIKQKDIAIFTRQLATMMKAGVPLLQAFDIVARGASNPRMTKLLNDI 113

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                 G SLS +  +  ++            +    + GG L   L  L+        +
Sbjct: 114 RSDVETGTSLSAAFRKHPQH-----FDSLYCNLIEAGEAGGILEALLERLAIYQEKTMAL 168

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K K+++  M   A   +   +   +   V             D     L  +A +   + 
Sbjct: 169 KQKIKSALMYPIAVMVVAFVVLTVIMIWVIPAFKEVFRSFGADLPAPTLFVIALSEFFVN 228

Query: 176 IM 177
             
Sbjct: 229 WW 230



 Score = 35.5 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 39/130 (30%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+ +A+  + G S + V         T+ +   +S   +        
Sbjct: 280 WTRTLSTMFAAGVPLVEALDSVGGASGNAVY-----AQATEQIQKDVSTGSALTTSMTAT 334

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +S   +  G+L   L   +    +  +   K  +  ME      +   +  
Sbjct: 335 SVFPTMVLQMSAIGEESGSLDHMLGKAAEFYEEEVDDMVKGLSSLMEPFIIVILGVLIGG 394

Query: 139 CVSTLVYFTS 148
            V ++     
Sbjct: 395 IVVSMYLPIF 404


>gi|110632959|ref|YP_673167.1| type II secretion system protein [Mesorhizobium sp. BNC1]
 gi|110283943|gb|ABG62002.1| type II secretion system protein [Chelativorans sp. BNC1]
          Length = 323

 Score = 81.7 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 60/148 (40%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +++ I KR       +P ALD+++  V +G+ +  A   +  +    S  +  E      
Sbjct: 165 IRNKITKRQKAIQRAWPEALDLLLICVESGMSIESAFRKVAEEIGTQSAEIAEEIALTTA 224

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   + R   ++ V    T +    + G  L +AL  +++  RD +  +A
Sbjct: 225 ELSFLQDRRQAYENLGRRTGVEGVRAAVTSLIQAEKYGTPLGQALRVMAQENRDMRMSEA 284

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 285 EKRAAALPPKLTVPMIVFFLPVLFAVII 312


>gi|17549305|ref|NP_522645.1| pilus assembly transmembrane protein [Ralstonia solanacearum
           GMI1000]
 gi|17431557|emb|CAD18235.1| probable pilus assembly tadb transmembrane protein [Ralstonia
           solanacearum GMI1000]
          Length = 308

 Score = 81.7 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 84/182 (46%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +  ++   + +   P  LD +VR +  G  V  A       +  P+R+    + + Q  G
Sbjct: 125 NRTRRMNERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLTSITQLQRAG 184

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             L  ++  + +   + E+   S+V+ +  + GG     +   +  +RDR+  + ++ AL
Sbjct: 185 KDLDAAVLAVGQLYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQKELLAL 244

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAWI+G LP  V  ++   +  Y+  +  DP G ML+  A    ++G +++  +
Sbjct: 245 SAETRMSAWILGLLPVVVGGIIIMFNAAYVMSMWRDPSGKMLMMAAFGLEVMGSLMLARL 304

Query: 183 IN 184
             
Sbjct: 305 AK 306


>gi|187926430|ref|YP_001892775.1| type II secretion system protein [Ralstonia pickettii 12J]
 gi|241665917|ref|YP_002984276.1| type II secretion system protein [Ralstonia pickettii 12D]
 gi|187728184|gb|ACD29348.1| type II secretion system protein [Ralstonia pickettii 12J]
 gi|240867944|gb|ACS65604.1| type II secretion system protein [Ralstonia pickettii 12D]
          Length = 308

 Score = 81.7 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 83/182 (45%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +  +K   + L   P  LD +VR +  G  V  A       +  P+R+    + + Q  G
Sbjct: 125 NRTRKMNERLLQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEQPLRNCLTAITQMQRAG 184

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             L  ++  + R   + E+   S+V+ +  + GG     +   +  +RDR+  + ++ AL
Sbjct: 185 KDLDAAVLTVGRQYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQRELFAL 244

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAWIIG LP  V  ++   +  Y+  +  DP G  L+  A    ++G +++  +
Sbjct: 245 SAETRLSAWIIGLLPVVVGGVIIMFNAAYIMSMWRDPFGKTLILTAFGMEVLGAVMLARL 304

Query: 183 IN 184
             
Sbjct: 305 AK 306


>gi|294338834|emb|CAZ87168.1| type 4 fimbrial assembly protein [Thiomonas sp. 3As]
          Length = 406

 Score = 81.7 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/184 (11%), Positives = 54/184 (29%), Gaps = 10/184 (5%)

Query: 1   MKHLIKKR----TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRV 55
           +  + K+R     A    D       +   ++AG+P+  +  ++        +      +
Sbjct: 49  VTKVKKRRLTSGKAIKAKDISTFTRQMSTMIKAGVPLLQSFDIVGRGHPNPNMARLIMDI 108

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                 G SLS +  +  +             +    +  G L   L  L+        +
Sbjct: 109 RGDVETGTSLSNAFRKHPK-----YFDALYCNLVEAGETAGMLELVLDRLATYQEKSLAI 163

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           ++K+++      A   +   +   +   V        +          L+ VA +   + 
Sbjct: 164 RSKIKSALTYPIAVMVVAFVVVSIIMLFVVPVFTDVFSQFGASLPAPTLMVVAISNFFVH 223

Query: 176 IMVM 179
              +
Sbjct: 224 YWYI 227



 Score = 38.9 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 45/135 (33%), Gaps = 7/135 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMV 73
                   +     AG+P+ +A+  + G + + V      ++ +    G SL+ S+    
Sbjct: 271 ALARWTRTLATMFGAGVPLVEALDAVGGAAGNIVYLRATEKIQQDVSTGTSLTTSMQTQG 330

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
            + P          ++   +  G+L   L+  + I     +   K  +  +E     ++ 
Sbjct: 331 VFPP------LVIQLTSIGEESGSLDSMLSKAADIYEAEVDELVKNLSALLEPIIIVFLG 384

Query: 134 GSLPFCVSTLVYFTS 148
             +   V  +     
Sbjct: 385 VIIGGLVVAMYLPIF 399


>gi|121610838|ref|YP_998645.1| type II secretion system protein [Verminephrobacter eiseniae
           EF01-2]
 gi|121555478|gb|ABM59627.1| type II secretion system protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 407

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 57/182 (31%), Gaps = 10/182 (5%)

Query: 3   HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIE 57
            + ++R          D       +   ++AG+P+  +  ++    ++  V      +  
Sbjct: 53  KIKERRMRSGKKVKPKDIALFTRQLATMMKAGVPLLQSFDIVGRGSTNPSVTKLLNDIRS 112

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G SLS +     +       +     +    +  G L   L  L+  +   + +K+
Sbjct: 113 DIETGTSLSGAFRHYPK-----YFNELYCNLVEAGETAGILESLLDRLATYMEKTEAIKS 167

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           ++++  M   A   +   +   +   V             D     LL +A +   +   
Sbjct: 168 RIKSALMYPSAVLCVAFVVVSLIMVFVIPAFKEVFTSFGADLPPPTLLVMAISETFVHWW 227

Query: 178 VM 179
            +
Sbjct: 228 WL 229



 Score = 36.3 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/131 (10%), Positives = 41/131 (31%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+ +A+  + G + + V +    ++ +    G SL+ ++        
Sbjct: 277 WTRTLSTMFAAGVPLVEALDSVGGAAGNSVYASVTDKIQQEVSTGTSLTVAMGNA----- 331

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G++   L   +       +      +  ME     ++   + 
Sbjct: 332 -NIFPTMVLQMCAIGEETGSIDHMLGKAADFYEAEVDTMVAGISSLMEPIIIVFLGCLIG 390

Query: 138 FCVSTLVYFTS 148
             V ++     
Sbjct: 391 GIVISMYLPIF 401


>gi|167648147|ref|YP_001685810.1| type II secretion system protein [Caulobacter sp. K31]
 gi|167350577|gb|ABZ73312.1| type II secretion system protein [Caulobacter sp. K31]
          Length = 328

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 65/158 (41%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           + ++ +KR    +  FP+ALD+++  V +G+ +  A+A +  +       +  E   +  
Sbjct: 163 ISNIAQKRRESIVAAFPDALDLMLICVESGMSIEAAIAKVGAEVGGASIELAEELSLLTA 222

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   + R      +    T +    + G  L  AL  +++  RD +   A
Sbjct: 223 ELSYLPERRLAYEGLARRTNHPGIRSVVTAMIQAERYGTPLGAALRVMAKENRDLRLSAA 282

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A ++ AK +  +I      +  ++    P  +N++
Sbjct: 283 EKKAAALPAKLTVPMILFFLPVLFIVI--MGPAAINIM 318


>gi|254475205|ref|ZP_05088591.1| type II/IV secretion system protein, TadC subfamily [Ruegeria sp.
           R11]
 gi|214029448|gb|EEB70283.1| type II/IV secretion system protein, TadC subfamily [Ruegeria sp.
           R11]
          Length = 327

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 71/160 (44%), Gaps = 3/160 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +   I++R  +    FP+ALD+++  V AG  +  A+  +  +   S   +  EF  V  
Sbjct: 165 ITRRIEERKQEITSGFPDALDMMLVCVEAGQSLDQAIVRVAKELHASYPALAEEFEVVAY 224

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G    + +  M     +Q+VS F TV+   +  G ++++AL   +  +RD++ M+A
Sbjct: 225 EMKAGKEKDKVLRDMGTRCGVQDVSSFVTVMIQSATFGTSIADALRVYAGEMRDKRVMRA 284

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           +  A  +  K +   +      +  ++   S   +  L N
Sbjct: 285 EEAANKLPTKMTLATMTLTVPPLLIILVGPSAQGIANLGN 324


>gi|300697739|ref|YP_003748400.1| type II secretion system protein [Ralstonia solanacearum CFBP2957]
 gi|299074463|emb|CBJ54013.1| Type II secretion system protein [Ralstonia solanacearum CFBP2957]
          Length = 318

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 82/181 (45%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             ++   + +   P  LD +VR +  G  V  A       +  P+R+      + Q  G 
Sbjct: 136 RTRRMNERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLALTTQLQRAGK 195

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L  ++  + +   + E+   S+V+ +  + GG     +   +  +RDR+  + ++ ALS
Sbjct: 196 DLDAAVLAVGQLYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLALS 255

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAWI+G LP  V  ++   +  Y+  +  DP G ML+  A    ++G +++  + 
Sbjct: 256 AETRLSAWILGLLPVVVGGIIIMFNATYVMSMWRDPVGKMLMMAAFGLEVMGSLMLARLA 315

Query: 184 N 184
            
Sbjct: 316 K 316


>gi|259418040|ref|ZP_05741959.1| type II secretion system protein [Silicibacter sp. TrichCH4B]
 gi|259346946|gb|EEW58760.1| type II secretion system protein [Silicibacter sp. TrichCH4B]
          Length = 323

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 67/149 (44%), Gaps = 3/149 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +   I++R       FP+ALD+++  V AG  +  A+  +  +   S   +  EF  V  
Sbjct: 164 ITRRIEERKQAITRAFPDALDMMLVCVEAGQSLDQAIVRVGKELRASYPELAEEFEIVAY 223

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G    + +  M     +Q+V+ F TV+   +  G ++++AL   +  +RD++ M+A
Sbjct: 224 EMKAGKEKDKVLRDMGTRCGVQDVASFVTVMIQSAAFGTSIADALRVYAGEMRDKRVMRA 283

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF 146
           +  A  +  K +   +G     +  ++  
Sbjct: 284 EEAANKLPTKMTLATMGLTVPPLLAILIA 312


>gi|126737249|ref|ZP_01752984.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
           sp. SK209-2-6]
 gi|126721834|gb|EBA18537.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
           sp. SK209-2-6]
          Length = 322

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 70/162 (43%), Gaps = 3/162 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +   +++R  K    FP++LD+++  V AG  +  ++  +  +       +  EF  V +
Sbjct: 160 VTRRVEERRQKIEQGFPDSLDMMLVCVEAGQSLDQSIVRVATELRASFPDLAYEFEIVAQ 219

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G    + +  M     +Q++S F TV+      G ++++AL   +  +RD++ M+A
Sbjct: 220 EMKAGKDKEKVLRDMGTRCGVQDISSFVTVMIQSQSFGTSIADALRVYAGEMRDKRVMRA 279

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159
           +  A  +  K +   +      +  ++   S   +  + N  
Sbjct: 280 EEAANKLPVKMTLATMMLTVPPLLIILVGPSVQGILNMGNTG 321


>gi|83718164|ref|YP_440464.1| hypothetical protein BTH_II2276 [Burkholderia thailandensis E264]
 gi|83651989|gb|ABC36053.1| membrane protein, putative [Burkholderia thailandensis E264]
          Length = 296

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 68/165 (41%), Gaps = 4/165 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   I  R    ++DFP+ALD++   V AGL +  A+  +  +    S  V  E   ++ 
Sbjct: 131 LARRIASRQRMIIEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLL 190

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +      ++V  FS ++    + G ++  +L  LS  LR ++ M+A
Sbjct: 191 EMRSGFTKEAALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 250

Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           + +A  +        I    P  ++ L+          L+    G
Sbjct: 251 EERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRTLLPTMAG 295


>gi|86137998|ref|ZP_01056574.1| type II/IV secretion system protein, TadC subfamily protein
           [Roseobacter sp. MED193]
 gi|85825590|gb|EAQ45789.1| type II/IV secretion system protein, TadC subfamily protein
           [Roseobacter sp. MED193]
          Length = 326

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 70/160 (43%), Gaps = 3/160 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +   I +R  +    FP++LD+++  V AG  +  ++  +  +   S   +  EF  V  
Sbjct: 164 VTRRIAERKEEIEAGFPDSLDMMLVCVEAGQSLDQSIVRVASELKASYPQLDYEFDIVAH 223

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G    + +  M     +Q++S F TV+   +  G +++EAL   +  +RD++ M+A
Sbjct: 224 EMKAGKDKEKVLRDMGTRCGVQDISSFVTVMIQSAAFGTSIAEALRVYASEMRDKRVMRA 283

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           +  A  +  K +   +      +  ++   S   +  + N
Sbjct: 284 EEAANKLPVKMTLATMMLTVPPLLIILVGPSVKNIMNMGN 323


>gi|269836553|ref|YP_003318781.1| type II secretion system protein [Sphaerobacter thermophilus DSM
           20745]
 gi|269785816|gb|ACZ37959.1| type II secretion system protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 307

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 73/157 (46%), Gaps = 1/157 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + + IK+R +  +   P+A+D++  SV AGL    A+  +V +  + +  EF R++    
Sbjct: 150 LGNRIKRRKSAIIRALPDAIDLLTISVEAGLGFDPALQRVVEKWDNELTREFARMLSEIR 209

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S  E++  +     + +++ F + +    QLG ++++ L   S+ +R R+  +A+ Q
Sbjct: 210 MGQSRREALRDLAERTNVDDLNVFVSAVVQADQLGVSITQVLRVQSKQMRMRRRQRAEEQ 269

Query: 121 ALSMEAKA-SAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
           A     K     +    P     L+    P   +  +
Sbjct: 270 AHKAPVKMIFPMVFLIFPALYIVLLGPAVPIVWDAFM 306


>gi|310640813|ref|YP_003945571.1| flp pilus assembly protein tadb-like protein [Paenibacillus
           polymyxa SC2]
 gi|309245763|gb|ADO55330.1| Flp pilus assembly protein TadB-like protein [Paenibacillus
           polymyxa SC2]
          Length = 263

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 80/193 (41%), Gaps = 8/193 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFRR 54
           K L+++R +     F  AL  +  S+ AG  V +     V             +  EF  
Sbjct: 72  KFLLQRRRSALSIQFKQALYSLSSSLSAGRSVENGFREAVEDLRLLSPDGDHDLIFEFNI 131

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           +     +G  +  ++  + R   +++++ F+ V +   + GG+L E +   S ++ ++  
Sbjct: 132 ITACLEIGQPVEAALQDLARRAQIEDITNFADVFAACKRTGGDLVEVVRRASSVIGEKLE 191

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           ++ ++  +  + +  + ++ + PF     +  T+  YM  L     G +L       +  
Sbjct: 192 IQQEIGVMIAQKRFESRVMFAAPFLFVLFMTVTAGDYMMPLY-SGTGMILSTFCLLVLGG 250

Query: 175 GIMVMRLMINFDV 187
            ++ +  ++  +V
Sbjct: 251 CLVWINHIMKIEV 263


>gi|219850073|ref|YP_002464506.1| type II secretion system protein [Chloroflexus aggregans DSM 9485]
 gi|219544332|gb|ACL26070.1| type II secretion system protein [Chloroflexus aggregans DSM 9485]
          Length = 311

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 1/163 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   IK+R    L   P+ALD++  SV AGL    A+  +  +  + +  EF+RV++   
Sbjct: 147 LDRKIKERKKNILKALPDALDLLCISVEAGLAFDLALQRVAQKWDNELSHEFQRVLQDIR 206

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +  E++  M     +++V  F + +    QLG ++S+ L   S  LR R+  +A+  
Sbjct: 207 LGRTRREALRDMAARTGVEDVQTFVSAVIQADQLGVSMSKILRIQSDQLRTRRRQRAEEA 266

Query: 121 ALSMEAKA-SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162
           A     K     +    P     ++    P  M+ L     G 
Sbjct: 267 AQKAPVKMLIPMVFLIFPALFVVILGPAVPRIMSALGVMNSGM 309


>gi|298345275|ref|YP_003717962.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063]
 gi|298235336|gb|ADI66468.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063]
          Length = 295

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 75/175 (42%), Gaps = 3/175 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
             +PN +D +V  VRAGL + + +  +  ++   +R  F         G +L  S+  + 
Sbjct: 116 KAWPNLVDDLVSGVRAGLSLGETLLEVAARAPKSLRVPFAHFAADYRAGGNLDASLKILK 175

Query: 74  RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           R +           + + +Q  G +L   L +L  +LR  +  + +V A        A +
Sbjct: 176 RELADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLARQSWTVTGARL 235

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
             + P+ +  L+  + PG + V  + P G M+L V A    +  ++M  +   +V
Sbjct: 236 AAASPWIILALL-LSRPGTLEV-YSTPVGSMILLVGALVSALAYLMMLRLGRLEV 288


>gi|239917279|ref|YP_002956837.1| Flp pilus assembly protein TadB [Micrococcus luteus NCTC 2665]
 gi|281414243|ref|ZP_06245985.1| Flp pilus assembly protein TadB [Micrococcus luteus NCTC 2665]
 gi|239838486|gb|ACS30283.1| Flp pilus assembly protein TadB [Micrococcus luteus NCTC 2665]
          Length = 285

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 70/183 (38%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R+    + +P+A+D    ++RAGL + +A+  +     + +R  F++      
Sbjct: 94  LSWQARRRSTALRELWPDAIDHARSAIRAGLTLPEALIQLGETGPEGLREPFQQFARDYR 153

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKV 119
            G    +++ R+   M           + +  +  G ++   L  LS  LR    ++A++
Sbjct: 154 AGARFVDALDRLKARMADPVADRLVVSLRLTREVGGADIGRLLQTLSEFLRQDARIRAEL 213

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +A       +A +    P+ V  L+                G  +L       ++   VM
Sbjct: 214 EARQSWTVNAARLAVCAPWLVLLLLGT--QPAAVAAYRSAAGGAVLLAGMVASVVCYRVM 271

Query: 180 RLM 182
             +
Sbjct: 272 LRI 274


>gi|315655695|ref|ZP_07908593.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333]
 gi|315489759|gb|EFU79386.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333]
          Length = 295

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 75/175 (42%), Gaps = 3/175 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
             +PN +D +V  VRAGL + + +  +  ++   +R  F         G +L  S+  + 
Sbjct: 116 KAWPNLVDDLVSGVRAGLSLGETLLEVAARAPKSLRVPFAHFAADYRAGGNLDASLKILK 175

Query: 74  RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           R +           + + +Q  G +L   L +L  +LR  +  + +V A        A +
Sbjct: 176 RELADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLARQSWTVTGARL 235

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
             + P+ +  L+  + PG + V  + P G M+L V A    +  ++M  +   +V
Sbjct: 236 AAASPWIILALL-LSRPGTLEV-YSTPVGSMILLVGALVSALAYLMMLRLGRLEV 288


>gi|148557757|ref|YP_001265339.1| type II secretion system protein [Sphingomonas wittichii RW1]
 gi|148502947|gb|ABQ71201.1| type II secretion system protein [Sphingomonas wittichii RW1]
          Length = 330

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 60/148 (40%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +K+LI KR        P+ALD++V    AGL V  A   +  +   +   +  EF     
Sbjct: 170 VKNLITKRQQAIRKALPDALDLLVICAEAGLSVDLAFNRVARELSKAYPELGDEFALTAI 229

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   + + + L  +    T +    + G  L+ AL  LS   R  + M+A
Sbjct: 230 ELGFLTDRRQAFENLAQRVNLDSIRGVVTTMIQTEKYGTPLAAALRVLSAEFRHERMMRA 289

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A  + A  +  +I  +   +  ++ 
Sbjct: 290 EEKAARLPAIMTVPLIMFILPVLFIVIL 317


>gi|313906428|ref|ZP_07839765.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
 gi|313468729|gb|EFR64094.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
          Length = 238

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 71/190 (37%), Gaps = 6/190 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRVIE 57
           L  KR       F + L  +  ++ AG  V + V              D +  E   ++ 
Sbjct: 49  LAWKRKQLLHYHFRDFLAALHTAMLAGYSVENGVKQAAKDLERLYGSSDVLCVELHDILR 108

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
             H    +      + R   L+++  F+ ++S+  + GGN++  L    R L  + + K 
Sbjct: 109 QMHFQKPVEVLFRDLGRRSGLEDIRNFAEILSIAKRTGGNMNMILQCTWRNLCGKIDTKQ 168

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           ++  +    K    ++  +P  +   +  T  G++  +  +P G +++ V          
Sbjct: 169 EIDTMIAARKYEQKLMSLMPAGIILYLRLTFQGFIERMYGNPAGVLVMTVCLGVYAGAYF 228

Query: 178 VMRLMINFDV 187
             + + +  V
Sbjct: 229 FGKKLTDIRV 238


>gi|148655544|ref|YP_001275749.1| type II secretion system protein [Roseiflexus sp. RS-1]
 gi|148567654|gb|ABQ89799.1| type II secretion system protein [Roseiflexus sp. RS-1]
          Length = 299

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 58/146 (39%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  +K+R        P+ LD++   V AG+    A+ ++V +   P+  E  R++    
Sbjct: 137 LRGRVKQRQHAITVALPDLLDMLAVCVSAGMGFDIALTLLVERGEGPLYEEMGRMLHELQ 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G    ++   +        +  F   +    +LG  ++  L   +  +R  +  +A+ +
Sbjct: 197 MGAPREQAFRNLAARNSSDALRGFIDALLQAEELGSPIATTLERQAEDIRTGRRYRAREE 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146
                 K +  ++  +   V  L+  
Sbjct: 257 GAKAATKITLIVVVLVTPSVLCLIIA 282


>gi|293189315|ref|ZP_06608038.1| putative bacterial type II secretion system protein F domain
           protein [Actinomyces odontolyticus F0309]
 gi|292821778|gb|EFF80714.1| putative bacterial type II secretion system protein F domain
           protein [Actinomyces odontolyticus F0309]
          Length = 291

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 66/177 (37%), Gaps = 3/177 (1%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
                 +P  +D +V  VRAG  +   +  +  +   PVR  F               ++
Sbjct: 107 KTVRAAWPEVIDAMVSGVRAGTALPQVLCDLADEGPVPVRFAFEAFSRDYSANGRFELAL 166

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
             M   +           + +     G +L+  L +L+ +LR+   ++ +++A       
Sbjct: 167 DTMKETVADPVADRIVEALRIARSVGGADLTRLLQDLASLLREDARVRGELEARQSWTVG 226

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           +A +  + P+ V  L+     G    + N P G  +L   A   +I  ++M+ M   
Sbjct: 227 AARLGLAAPWVVLLLLS--GGGASAHVWNSPGGVAVLCSGAGICVIAYLIMKAMGRL 281


>gi|149186259|ref|ZP_01864573.1| hypothetical protein ED21_31019 [Erythrobacter sp. SD-21]
 gi|148830290|gb|EDL48727.1| hypothetical protein ED21_31019 [Erythrobacter sp. SD-21]
          Length = 329

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 60/148 (40%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + ++  KRT       P+ALD++V    AGL V  A   +  +   +   +  EF     
Sbjct: 169 LSNIASKRTDAIRKGLPDALDLLVICAEAGLTVDAAFNRVAKELGRAYPELGDEFALTAI 228

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   +   + L+ V    T +    + G  L+ AL  LS   R+ + M+A
Sbjct: 229 ELSFLNERKKAFDNLAYRVNLEAVKGVVTTMVQTERYGTPLASALRVLSAEFRNERMMRA 288

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A  + A  +  +I  +   +  ++ 
Sbjct: 289 EEKAARLPAIMTVPLIMFILPVLFIVIL 316


>gi|114764951|ref|ZP_01444124.1| Putative Flp pilus assembly protein TadC [Pelagibaca bermudensis
           HTCC2601]
 gi|114542663|gb|EAU45687.1| Putative Flp pilus assembly protein TadC [Roseovarius sp. HTCC2601]
          Length = 323

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 70/148 (47%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +   +++R  +  + FP+ALD+++  V AG  +  ++  +  +   S   +  EF  +  
Sbjct: 161 ITKRVEERKKQIEEGFPDALDMMLVCVEAGQSLDQSIVRVSKEIRASYAALADEFEIISH 220

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G   +  ++ M     + +VS F TV++  S  G ++++AL   +  +RD++ M+A
Sbjct: 221 EMKAGKDKASVLNDMGERCGVADVSSFVTVLNQASTFGTSIADALRIYASEMRDKRVMRA 280

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A  +  K +   +      +  ++ 
Sbjct: 281 EEKANKLPTKMTLTTMMLTVPPLLIILV 308


>gi|239629081|ref|ZP_04672112.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519227|gb|EEQ59093.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 227

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 78/192 (40%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRV 55
           + L ++R  +    F   + ++   + AG  + + +A+  G+          +  EF  +
Sbjct: 36  RDLRQERIRQLGLQFKEGILVLASYLGAGYSLENGLAMCTGELEGIYGKQGMITEEFSTL 95

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                +   +   +        L++V  F+ V +   + GG L   +   + I+RD+  +
Sbjct: 96  TNGVRMNRPVELLLMEFGARSGLEDVDHFAQVFAAARRSGGELVGIINYTAGIIRDKVQV 155

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + ++  ++        I+  +PF +   +  TS G+  V+     G  ++ +  A  L  
Sbjct: 156 QEEIHTMTAARVFEQKIMNGIPFLIVLYIDLTSLGFFRVMYETMMGRAVMTICLAVYLGA 215

Query: 176 IMVMRLMINFDV 187
            M+ + ++  +V
Sbjct: 216 WMLSKKILEIEV 227


>gi|329847258|ref|ZP_08262286.1| bacterial type II secretion system protein F domain protein
           [Asticcacaulis biprosthecum C19]
 gi|328842321|gb|EGF91890.1| bacterial type II secretion system protein F domain protein
           [Asticcacaulis biprosthecum C19]
          Length = 343

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 59/148 (39%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           + +   KR    +  FP+ALD+++  V AG+ +  A+  +  +      P+  E   ++ 
Sbjct: 165 ISNTASKRRQSIVAAFPDALDLLLICVEAGMSIETALHKVSQEIGGTSIPLAEEMSLLVA 224

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++     +      +    T +    + G  L  AL  +++  R+ +   A
Sbjct: 225 ELSYLPERRQAYEGFSKRTSHPGIKSVCTAMIQAEKYGTPLGTALRVMAKENRELRLSAA 284

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++ A+ +  +I      +  ++ 
Sbjct: 285 EKKAAALPAQLTVPMIVFFLPVLFVVIL 312


>gi|297171607|gb|ADI22603.1| type II secretory pathway, component PulF [uncultured
           verrucomicrobium HF0500_16O23]
          Length = 417

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 67/187 (35%), Gaps = 12/187 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQ 59
           ++   ++R    L D  N    +   ++AG+P++ A+  +    S    +S   +++   
Sbjct: 64  VRRFGRRRKKPKLQDLANFTRQLANLLKAGMPLTGALNSMTSLDSDGIPKSVCAQLLADV 123

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G +LS S+ +     P          +    +  G++ E L  L+        ++ K+
Sbjct: 124 REGRTLSVSMGKFPEIFPD-----MYLNMVKAGESSGSMVEVLKRLADHYERFAEVRQKI 178

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGI 176
            +  +      +++G     +   + +  P +M +         L   +    +      
Sbjct: 179 ISALVYPV---FVMGLGFLLIFVFMSYILPKFMTIFKGMKVQLPLSTRILEGMSGFFENW 235

Query: 177 MVMRLMI 183
             + L+I
Sbjct: 236 WWLVLII 242


>gi|291537187|emb|CBL10299.1| hypothetical protein ROI_34750 [Roseburia intestinalis M50/1]
          Length = 245

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 74/192 (38%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55
                +R  K + +F +A+  +  ++ AG  +  A      +          +  E  ++
Sbjct: 54  NKKRDERAKKLMIEFRDAIQTVAAALLAGYSIEHAWKEAEREIMDLYGKEAMITKELIQM 113

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                L  ++ E +  +     ++E+  F+ +     + GG+  + +   +  +  +  +
Sbjct: 114 NAEIKLNRNVEEILHDLAVRSGVEEIQSFAEIFGFAKRSGGDFPQIIRTTAARISAKIEV 173

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + +V  +    K    I+  +PF +   +   S  +++ L  +  G +++  A    +  
Sbjct: 174 EREVDTVIAGKKLEGKIMSVMPFFILAYLNLASGEFIDPLYGNLAGVLVMSAALLVFVGA 233

Query: 176 IMVMRLMINFDV 187
           + + R + +  V
Sbjct: 234 MAINRRISDIRV 245


>gi|315656391|ref|ZP_07909280.1| type II secretion system protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492950|gb|EFU82552.1| type II secretion system protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 295

 Score = 80.9 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 74/175 (42%), Gaps = 3/175 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
             +PN +D +V  VRAGL + + +  +  ++   +R  F         G +L  S+  + 
Sbjct: 116 KAWPNLVDDLVSGVRAGLSLGETLLEVAARAPKSLRVPFAHFAADYRAGGNLDASLKILK 175

Query: 74  RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + + +Q  G +L   L +L  +LR  +  + +V A        A +
Sbjct: 176 HELADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLARQSWTVTGARL 235

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
             + P+ +  L+  + PG +  + + P G M+L V A    +  ++M  +   +V
Sbjct: 236 AAASPWIILALL-LSRPGTLE-MYSTPVGSMILLVGALVSALAYLMMLRLGRLEV 288


>gi|154482610|ref|ZP_02025058.1| hypothetical protein EUBVEN_00277 [Eubacterium ventriosum ATCC
           27560]
 gi|149736510|gb|EDM52396.1| hypothetical protein EUBVEN_00277 [Eubacterium ventriosum ATCC
           27560]
          Length = 238

 Score = 80.9 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 69/187 (36%), Gaps = 6/187 (3%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIETQH 60
           +  A+F   +   L  +   +  G  V + +     +          + SE R +     
Sbjct: 52  RAKAEFEHQYKEMLVALKDGIVTGYSVENGLKESYREMVNIYGYDGLICSELRLMTSRLK 111

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           L   +            L+    F    S+  + GGN++  +  +   +  ++++K ++ 
Sbjct: 112 LNTPIEIVFKDFAERTDLESAHMFYNTFSIAQKSGGNMNNVIKRVIENIVLKESVKEEIN 171

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               + K    I+  +P  +   +   SPG+++++     G++++ V     L+  +   
Sbjct: 172 VAINDKKLEQRIMTVIPLLLIGYISMASPGFLDIMYKSIMGNIVMTVCLIVYLLAYLWSE 231

Query: 181 LMINFDV 187
            ++   +
Sbjct: 232 KIVKVSI 238


>gi|289706420|ref|ZP_06502778.1| type II secretion system F domain protein [Micrococcus luteus SK58]
 gi|289556915|gb|EFD50248.1| type II secretion system F domain protein [Micrococcus luteus SK58]
          Length = 285

 Score = 80.9 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 69/183 (37%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R+    + +P+A+D    ++RAGL + +A+  +     + +R  F+       
Sbjct: 94  LSWQARRRSTALRELWPDAIDHARSAIRAGLTLPEALIQLGETGPEGLREPFQHFARDYR 153

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKV 119
            G    +++ R+   M           + +  +  G ++   L  LS  LR    ++A++
Sbjct: 154 AGARFVDALDRLKARMADPVADRLVVSLRLTREVGGADIGRLLQTLSEFLRQDARIRAEL 213

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +A       +A +    P+ V  L+                G  +L       ++   VM
Sbjct: 214 EARQSWTVNAARLAVCAPWLVLLLLGT--QPAAVAAYRSAAGGAVLLAGMVASVVCYRVM 271

Query: 180 RLM 182
             +
Sbjct: 272 LRI 274


>gi|160900921|ref|YP_001566503.1| type II secretion system protein [Delftia acidovorans SPH-1]
 gi|160366505|gb|ABX38118.1| type II secretion system protein [Delftia acidovorans SPH-1]
          Length = 405

 Score = 80.9 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 58/185 (31%), Gaps = 11/185 (5%)

Query: 1   MKHLIKKRT----AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRR 54
           +   IKKR      K    D       +   ++AG+P+  A  ++    ++  V      
Sbjct: 48  LPSKIKKRRTRGGKKIKPKDIALFTRQMATMMKAGVPLLQAFDIVGRGNTNPSVTRLLAD 107

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           +      G SL+ +  +                +    +  G L   L  L+  +   + 
Sbjct: 108 IRSDVETGTSLNAAYRKHPL-----YFDSLYCNLVEAGEAAGILEALLDRLATYMEKTEA 162

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +K+K+++  M   +   +   +   +   V        +    D     L  +  + + +
Sbjct: 163 IKSKIKSALMYPISVVVVAFIVVTIIMLFVIPAFKDVFSSFGADLPAPTLFVMGVSDIFV 222

Query: 175 GIMVM 179
               +
Sbjct: 223 QWWWV 227



 Score = 35.9 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/131 (9%), Positives = 41/131 (31%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+ +A+  + G   +    +   ++ +    G SL+ +++       
Sbjct: 275 WTRTLSTMFAAGVPLVEALDSVGGASGNAIYANATEKIQQEVSTGTSLTVAMTNA----- 329

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G++   L   +    +  +      +  ME     ++   + 
Sbjct: 330 -NVFPSMVLQMCAIGEESGSIDHMLGKAADFYEEEVDDMVAGLSSLMEPIIIVFLGTLIG 388

Query: 138 FCVSTLVYFTS 148
             V ++     
Sbjct: 389 GIVVSMYLPIF 399


>gi|225872758|ref|YP_002754215.1| type II secretion system protein [Acidobacterium capsulatum ATCC
           51196]
 gi|225793390|gb|ACO33480.1| type II secretion system protein [Acidobacterium capsulatum ATCC
           51196]
          Length = 299

 Score = 80.9 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 67/157 (42%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++  +K R  +     P+A+D++V  V AGL +  A+  +  +   S   +  EF ++  
Sbjct: 136 LERKVKGRRHRISRSMPDAIDLLVICVDAGLGLDQAMLRVGQELAVSHPEINEEFLQINR 195

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
            Q  G    ++         L E+  F +++    + G  ++ AL   S  +R ++   A
Sbjct: 196 EQRAGRPRVDAWKGFAERTRLPEIQNFVSMLVQTERFGTPITRALNTFSDSMRLKRKQIA 255

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           + +A     K    ++  +  C+  ++    P ++ +
Sbjct: 256 EEKAAKTTVKMLFPLVLFIFPCIFIVL--LGPAFITI 290


>gi|254486075|ref|ZP_05099280.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
           sp. GAI101]
 gi|214042944|gb|EEB83582.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
           sp. GAI101]
          Length = 308

 Score = 80.9 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 67/149 (44%), Gaps = 3/149 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +   ++KR  +    FP+ALD+++  V AG  +  ++  +  +   S   +  EF  V  
Sbjct: 149 VTKRVEKRKEEITRGFPDALDMMLVCVEAGQSLDQSIVRVAKELHASYPALAEEFEVVAY 208

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G      ++ M     +Q+VS F TV+   +  G ++S+AL   +  +RD++ M+A
Sbjct: 209 EMKAGKDKVGVLTDMGDRCGVQDVSSFVTVLCQSAAFGTSISDALRVYAEEMRDKRVMRA 268

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF 146
           +  A  +  K +   +      +  ++  
Sbjct: 269 EEAANKLPTKMTLATMMLTVPPLLIILVA 297


>gi|220913386|ref|YP_002488695.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
 gi|219860264|gb|ACL40606.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
          Length = 291

 Score = 80.9 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 1/156 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++  +KR      + PNALD ++ SV+AGL    A+         P+  E  R ++   
Sbjct: 135 LRNRAQKRREAIRLELPNALDQMLISVQAGLGFETAMGRAGENGRGPLAEELIRTLQDIQ 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S  E+   +   + +  V  F   +      G  ++  L   ++ +R ++   A+  
Sbjct: 195 VGRSRKEAYLALSERVDVPSVRTFVRAVVQADAYGIAIANVLKTQAKDMRIKRRQLAEEH 254

Query: 121 ALSMEAKA-SAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           A+ M  K     I   LP     L+       M+V 
Sbjct: 255 AMKMPVKMLFPLIFFILPTLFIVLLGPAVLQIMSVF 290


>gi|85373127|ref|YP_457189.1| hypothetical protein ELI_01500 [Erythrobacter litoralis HTCC2594]
 gi|84786210|gb|ABC62392.1| hypothetical protein ELI_01500 [Erythrobacter litoralis HTCC2594]
          Length = 331

 Score = 80.9 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 60/148 (40%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +K+   KRT       P+ALD++V    AGL V  A   +  +   +   +  EF     
Sbjct: 171 LKNKAAKRTDAIRKGLPDALDLLVICAEAGLTVDAAFNRVAKELGRAYPELGDEFALTAI 230

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   +   + L+ V    T +    + G  L+ AL  LS   R+ + M+A
Sbjct: 231 ELSFLTERKQAFDNLAYRVDLEAVKGVVTTMVQTERYGTPLASALRVLSAEFRNERMMRA 290

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A  + A  +  +I  +   +  ++ 
Sbjct: 291 EEKAARLPAIMTVPLILFILPVLFIVIL 318


>gi|124265701|ref|YP_001019705.1| pilus tip-associated protein [Methylibium petroleiphilum PM1]
 gi|124258476|gb|ABM93470.1| Pilus tip-associated protein [Methylibium petroleiphilum PM1]
          Length = 408

 Score = 80.9 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/184 (12%), Positives = 54/184 (29%), Gaps = 10/184 (5%)

Query: 1   MKHLIKKRT---AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRV 55
           +  + K+R          D       I   +RAG+P+  +  ++    ++  V      +
Sbjct: 52  VNKVKKRRMSGGKSIKPKDIAIFTRQIATMMRAGVPLLQSFDIVARGSTNPRVTKLLTDI 111

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                 G SLS +  +                +    +  G L   L  L+        +
Sbjct: 112 RSDIETGTSLSSAFRKHPL-----YFDALYCNLVEAGEAAGILETLLERLATYQEKTLEI 166

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K K+++  +   A   +   +   +   V             D     L  ++ + + + 
Sbjct: 167 KRKIKSALIYPVAVLVVAFVVVAVIMIFVIPAFKEVFTSFGADLPAPTLFVMSMSEIFVS 226

Query: 176 IMVM 179
              +
Sbjct: 227 YWWL 230



 Score = 37.8 bits (86), Expect = 0.69,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 41/137 (29%), Gaps = 5/137 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           F          +     AG+P+ +A+  + G S + V +E      T+ +   +S   + 
Sbjct: 271 FKSAVARWTRTLATMFAAGVPLVEALDSVGGASGNAVFAE-----ATEQIQKDVSTGTAL 325

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           ++   +  G L   L+  +       +   K  +  +E      
Sbjct: 326 TTSMQATGIFPVMVLQMAAIGEESGALDHMLSKAAEFYEAEVDEAVKGLSSLLEPIIIVV 385

Query: 132 IIGSLPFCVSTLVYFTS 148
           +   +   V ++     
Sbjct: 386 LGTIIGGIVVSMYLPIF 402


>gi|254473723|ref|ZP_05087118.1| type II secretion system protein [Pseudovibrio sp. JE062]
 gi|211957109|gb|EEA92314.1| type II secretion system protein [Pseudovibrio sp. JE062]
          Length = 324

 Score = 80.9 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 55/149 (36%), Gaps = 3/149 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           +++ + KR       +P+A+D+++  V +G+ +  A   +  +       +  E      
Sbjct: 166 VQNKVMKRQESIRLAWPDAMDLMLICVESGMSIEAAFKKVAEEVGPQSTALAEELILANA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   +     L  V      +S   + G  +  AL  LS   R  +  +A
Sbjct: 226 ELSYLDERRKAYQNLAERTGLDGVKNVVVALSQAEKYGTPIGYALRVLSEESRQERMQEA 285

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF 146
           + +A ++  K +  ++      +  ++  
Sbjct: 286 ERKAAALPPKLTVPMMLFFLPVLFIVLIA 314


>gi|261379321|ref|ZP_05983894.1| 3-isopropylmalate dehydrogenase [Neisseria subflava NJ9703]
 gi|284797758|gb|EFC53105.1| 3-isopropylmalate dehydrogenase [Neisseria subflava NJ9703]
          Length = 413

 Score = 80.9 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 63/187 (33%), Gaps = 7/187 (3%)

Query: 1   MKHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIET 58
           +  +   R  +   +D       +   ++AGLP+  A  ++    S+  +     +V   
Sbjct: 59  ISKVKTARKRRITQEDITVFTRQLATMMKAGLPLMQAFEIVARGHSNPSMTEMLMQVRSD 118

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G +L +S S+  +         F   +    + GG L   L  L+      + +K K
Sbjct: 119 VEQGSALGKSFSKYPK-----YFDRFYCNLVSAGESGGVLESLLDKLAVYKEKTQAIKKK 173

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           V+       A   +  +L F +   V          +  +      L +  + + +    
Sbjct: 174 VKTALTYPIAIIVVAIALIFIMMMFVLPAFKEVYANMGAELPSLTQLVMNLSDLFVDYGW 233

Query: 179 MRLMINF 185
           + +++  
Sbjct: 234 IMIILLI 240


>gi|253998298|ref|YP_003050361.1| type II secretion system protein [Methylovorus sp. SIP3-4]
 gi|313200371|ref|YP_004039029.1| type II secretion system protein [Methylovorus sp. MP688]
 gi|253984977|gb|ACT49834.1| type II secretion system protein [Methylovorus sp. SIP3-4]
 gi|312439687|gb|ADQ83793.1| type II secretion system protein [Methylovorus sp. MP688]
          Length = 403

 Score = 80.9 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 50/167 (29%), Gaps = 6/167 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   ++AG+P+  A  ++    ++  V      +      G SLS++  +
Sbjct: 63  EKDVTLFTRQLATMMKAGVPLLQAFEIVGKGHNNPAVSKLLGDIKSDVETGSSLSQAFRK 122

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    +  G L   L  L+        +K+K+++      +   
Sbjct: 123 YPL-----YFDALYCNLVGAGEQAGILDSLLDRLATYKEKILAIKSKIKSALFYPVSIIV 177

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +   +   +   V        +    D     L+ +A +   +    
Sbjct: 178 VAFIITAVIMIFVIPAFKELFSSFGADLPAPTLIVMAISDFFVEYWW 224



 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 45/142 (31%), Gaps = 11/142 (7%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLS 66
           R A            +     AG+P+ +A+  + G S + V  E  +++      G SL+
Sbjct: 266 RKATIAR----FARTLSTMFAAGVPLVEALDSVAGASGNRVYYEATKQIQSEISTGTSLT 321

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++  +      +        +    +  G L   L+ ++       +   +  +  ME 
Sbjct: 322 VAMQNV------EVFPNMVLQMVAIGEESGALDSMLSKVADFYEAEVDDAVEALSSLMEP 375

Query: 127 KASAWIIGSLPFCVSTLVYFTS 148
                +   +   V  +     
Sbjct: 376 IIMVVLGTLIGGLVIAMYLPIF 397


>gi|167840869|ref|ZP_02467553.1| hypothetical protein Bpse38_29619 [Burkholderia thailandensis
           MSMB43]
          Length = 279

 Score = 80.9 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 73/157 (46%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   I+ R  K ++DFP+ALD++   V AGL +  A+  +  +    S  V  E   ++ 
Sbjct: 114 LSRHIRLRQRKIIEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPIVADELGLMLL 173

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +      ++V  F  ++    + G ++  +L  LS  LR ++ M+A
Sbjct: 174 EIRSGFAKDAALRNLALRTGAEDVDAFCAMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 233

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           + +A  +  K    +I  +   + T++    P ++++
Sbjct: 234 EERAAKIALKLLFPLIFCIFPALLTVL--LGPAFIHI 268


>gi|320008843|gb|ADW03693.1| Type II secretion system F domain protein [Streptomyces
           flavogriseus ATCC 33331]
          Length = 295

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 58/141 (41%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            ++KR        P+ LD++   V AGL    A+  +  +   P   E R  +    +G+
Sbjct: 137 AVRKRRDDIDRTLPDFLDVLAVVVSAGLGFRQALDRVAEKYQGPWSDELRITLRQMDMGV 196

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S  ++   + R    ++V+ F T +    +LG  + + L  ++  +R      A+ +A  
Sbjct: 197 SRRQAFDELRRRNDSEQVAMFVTALQQGEELGAPIVDTLIAIANDMRRTDAQNARRKAAK 256

Query: 124 MEAKASAWIIGSLPFCVSTLV 144
              KA+  +   +      L+
Sbjct: 257 AVPKATLMVTTFMIPATMILM 277


>gi|111220777|ref|YP_711571.1| hypothetical protein FRAAL1320 [Frankia alni ACN14a]
 gi|111148309|emb|CAJ59981.1| conserved hypothetical protein; putative membrane protein [Frankia
           alni ACN14a]
          Length = 357

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 70/184 (38%), Gaps = 3/184 (1%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
                R     + +P+ +D +  +VRAG+ + + +A +  +    +R  F R  E     
Sbjct: 96  RRRHGRIHDLRELWPDVVDNLASAVRAGMSLPEGLAAVGVRGPVQLRPAFTRFGEDYSAT 155

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQA 121
            S S  + R+   +           + +  +  G +L   L  LS  LR+    +A+++ 
Sbjct: 156 GSFSTCLDRLADELADPVADRIIESLRMAREVGGTDLGRLLRTLSTFLREDARTRAELET 215

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
                  +A +  + P+ V  L+            + P G ++L V      +  ++M+ 
Sbjct: 216 RQGWTVNAARLALAAPWIVLLLLATRGQNVQA--YDSPTGVLVLVVGGGVSALAYLLMKR 273

Query: 182 MINF 185
           +   
Sbjct: 274 IGRL 277


>gi|218887822|ref|YP_002437143.1| type II secretion system protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758776|gb|ACL09675.1| type II secretion system protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 326

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 69/158 (43%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   IK R    ++  P+ALD++V  V AG+ +  A + +  +    +  +  E   VI 
Sbjct: 163 LSRRIKARRLDIINSLPDALDLLVVCVEAGMGLDQAFSRVAREMAATNPVLAEELNLVIL 222

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S +E++  +   + L++V+   T+I      G ++S  L   S  +R  +  +A
Sbjct: 223 ELRAGKSRAEALKNLAARVALEDVNSLVTLIVQADAFGTSISSTLRVYSDTMRTTRFQRA 282

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  A  M  K    ++  +   +   V    P ++ ++
Sbjct: 283 EEIAAKMPVKLLFPLVFCILPALF--VTIMGPAFIKLM 318


>gi|291540421|emb|CBL13532.1| hypothetical protein RO1_32050 [Roseburia intestinalis XB6B4]
          Length = 245

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 74/192 (38%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55
                +R  K + +F +A+  +  ++ AG  +  A      +          +  E  ++
Sbjct: 54  NKKRDERAKKLMIEFRDAIQAVAAALLAGYSIEHAWKEAEREIMDLYGKEAMITKELIQM 113

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                L  ++ E +  +     ++E+  F+ +     + GG+  + +   +  +  +  +
Sbjct: 114 NAEIKLNRNVEEILHDLAVRSGVEEIQSFAEIFGFAKRSGGDFPQIIRTTAARISAKIEV 173

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + +V  +    K    I+  +PF +   +   S  +++ L  +  G +++  A    +  
Sbjct: 174 EREVDTVIAGKKLEGKIMSVMPFFILAYLNLASGEFIDPLYGNLAGVLVMSAALLVFVGA 233

Query: 176 IMVMRLMINFDV 187
           + + R + +  V
Sbjct: 234 MAINRRISDIRV 245


>gi|86159245|ref|YP_466030.1| type II secretion system protein [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85775756|gb|ABC82593.1| type II secretion system protein [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 306

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 66/165 (40%), Gaps = 4/165 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++  ++ R  +     P+ALD++V  V AGL +  A+  +  +   +   +  E R V  
Sbjct: 140 LRARVQARQTQLDRSLPDALDLLVTCVEAGLGLDSALQRVSDEVALAHPLLSKELRLVFL 199

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G++   +  RM       E+   S  ++     G ++  AL   +  +R R+  +A
Sbjct: 200 EVKAGIARISAFRRMAERTGAPELRSLSATLAQTELFGTSVGAALRIQAEGIRIRRMHRA 259

Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           + +A  +  K S   ++  LP   + ++          L     G
Sbjct: 260 EEKAAYVSVKMSLPLVLCILPCVFAVVLGPAVVNMAERLFPLLGG 304


>gi|255658710|ref|ZP_05404119.1| putative type II secretion system protein [Mitsuokella multacida
           DSM 20544]
 gi|260849099|gb|EEX69106.1| putative type II secretion system protein [Mitsuokella multacida
           DSM 20544]
          Length = 307

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 66/146 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R  +     P  LD++  SV+AGL    A++ I  +   P   E RR+ +   
Sbjct: 152 LNTTIQRRQKQIEHQLPEVLDLLCVSVQAGLSFDAALSKITARMKGPFIDECRRMQDDIR 211

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+    ++  M     L++VS F T I    +LG ++ + L N +  +R+R+    K Q
Sbjct: 212 MGVVRRTAMRSMADRCGLEDVSLFMTSIIQAERLGTSMGKTLKNQADNIRERRRQYVKAQ 271

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146
           A+    K    ++  +   +  +   
Sbjct: 272 AMKAPVKIVFPLVLFIFPAIFVVTLV 297


>gi|222084474|ref|YP_002543003.1| pilus assembly protein [Agrobacterium radiobacter K84]
 gi|221721922|gb|ACM25078.1| pilus assembly protein [Agrobacterium radiobacter K84]
          Length = 325

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 63/158 (39%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + + + KR       +P+ALD+++  V +G+ +   +  +  +    S  +  E      
Sbjct: 167 ISNRVTKRQKSIKRAWPDALDLMLICVESGISIEAGMRRVSEEMAEQSPALAEEMVLTTA 226

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +     ++ V   +  +    + G  +S+AL  +++  RD +  +A
Sbjct: 227 ELSFLQDRRTAFDNLAARTQIEIVKSVTQALIQAERYGTPVSQALRVMAQEGRDERMNEA 286

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A ++  K +  +I      +  ++    P  + V+
Sbjct: 287 EKKAAALPPKLTVPMIVFFLPVLMAVI--LGPAIIQVM 322


>gi|296134880|ref|YP_003642122.1| Type II secretion system F domain protein [Thiomonas intermedia
           K12]
 gi|295795002|gb|ADG29792.1| Type II secretion system F domain protein [Thiomonas intermedia
           K12]
          Length = 406

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/184 (11%), Positives = 54/184 (29%), Gaps = 10/184 (5%)

Query: 1   MKHLIKKR----TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRV 55
           +  + K+R     A    D       +   ++AG+P+  +  ++        +      +
Sbjct: 49  VTKVKKRRLTSGKAIKAKDISTFTRQMSTMIKAGVPLLQSFDIVGRGHPNPNMARLIMDI 108

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                 G SLS +  +  +             +    +  G L   L  L+        +
Sbjct: 109 RGDVETGTSLSNAFRKHPK-----YFDALYCNLVEAGETAGMLELVLDRLATYQEKSLAI 163

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           ++K+++      A   +   +   +   V        +          L+ VA +   + 
Sbjct: 164 RSKIKSALTYPIAVMVVAFVVVSIIMLFVVPVFTDVFSQFGASLPAPTLMVVAMSNFFVH 223

Query: 176 IMVM 179
              +
Sbjct: 224 YWYI 227



 Score = 38.9 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 45/135 (33%), Gaps = 7/135 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMV 73
                   +     AG+P+ +A+  + G + + V      ++ +    G SL+ S+    
Sbjct: 271 ALARWTRTLATMFGAGVPLVEALDAVGGAAGNIVYLRATEKIQQDVSTGTSLTTSMQTQG 330

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
            + P          ++   +  G+L   L+  + I     +   K  +  +E     ++ 
Sbjct: 331 VFPP------LVIQLTSIGEESGSLDSMLSKAADIYEAEVDELVKNLSALLEPIIIVFLG 384

Query: 134 GSLPFCVSTLVYFTS 148
             +   V  +     
Sbjct: 385 VIIGGLVVAMYLPIF 399


>gi|302877538|ref|YP_003846102.1| Type II secretion system F domain [Gallionella capsiferriformans
           ES-2]
 gi|302580327|gb|ADL54338.1| Type II secretion system F domain [Gallionella capsiferriformans
           ES-2]
          Length = 403

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/179 (11%), Positives = 50/179 (27%), Gaps = 6/179 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ 59
           +K       A    D       +   ++AG+P+  A  ++     +  V      +    
Sbjct: 51  IKRARSSAKAITQKDITLFTRQLATMLKAGVPLLQAFDIVGKGHHNPSVSRLLFSIKTDI 110

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G SL ++  +                +    +  G L   L  L+        +K+K+
Sbjct: 111 ETGSSLQQAFKKHPL-----YFDDLYCNLIGAGESAGILDSLLERLATYQEKILAIKSKI 165

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           ++      +   +   +   +   V        +    D     L  +A +   +    
Sbjct: 166 KSALFYPVSIIVVAFIITAVIMIFVIPAFKELFSSFGADLPAPTLFIMAISDFFVSYWW 224



 Score = 40.9 bits (94), Expect = 0.090,   Method: Composition-based stats.
 Identities = 15/129 (11%), Positives = 40/129 (31%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +     AG+P+ +A   + G + + V     + +      G SL+ ++         +
Sbjct: 275 RTLSTMFAAGVPLVEAFNSVAGAAGNAVYFDATKSIQREVSTGNSLTVAMQN------TE 328

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                   +    +  G+L   L+ ++       +   +  +  ME      +   +   
Sbjct: 329 VFPSMVIQMVSIGEEAGSLDAMLSKVADFYEAEVDDAVEALSSLMEPIIMVVLGTLIGGM 388

Query: 140 VSTLVYFTS 148
           V  +     
Sbjct: 389 VVAMYLPIF 397


>gi|15679697|ref|NP_276815.1| hypothetical protein MTH1703 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622834|gb|AAB86175.1| unknown [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 359

 Score = 80.5 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 74/178 (41%), Gaps = 2/178 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR+++   + P AL  +   +++GL + D++  +       +  EF R +E    G +  
Sbjct: 178 KRSSEASRELPFALRQMATELKSGLGLHDSMRSVAMSGYGALSEEFARTLEEIKYGETTE 237

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++  M   +    +      I+     GG+LS+ L  ++  +     MK K  +  + +
Sbjct: 238 NALIEMSNRIESDGLKRAVYQITRTLNSGGDLSKTLNVIADDIAYEMRMKLKDYSQKLNS 297

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI--MVMRLM 182
               ++  ++   V  LV   +   +   +  P   +++ +    ML+G    +++ +
Sbjct: 298 FTMIYMFLAILGPVIFLVMLLAAATVMGSVLPPIAIIMIYLFLFPMLVGFMAFMIKRL 355


>gi|307332439|ref|ZP_07611503.1| Type II secretion system F domain protein [Streptomyces
           violaceusniger Tu 4113]
 gi|306881908|gb|EFN13030.1| Type II secretion system F domain protein [Streptomyces
           violaceusniger Tu 4113]
          Length = 295

 Score = 80.5 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 57/143 (39%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            +++R        P+ LD++   V AGL    A+  +  +   P   E R  +    +G+
Sbjct: 137 AVRERKDAIERTLPDFLDVLAVVVSAGLSFRQALDRVAEKYEGPWADELRITLRQMDMGV 196

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S   +   + +    ++V+ F T +    +LG  + E L  ++  +R      A+ +A  
Sbjct: 197 SRRHAFEELRKRNDSEQVAQFVTALQQGEELGAPIVETLIAIANDMRRTDAQNARRRAAR 256

Query: 124 MEAKASAWIIGSLPFCVSTLVYF 146
              KA+  I   +      L+  
Sbjct: 257 AVPKATMVITTFMVPGTMVLLVA 279


>gi|238917898|ref|YP_002931415.1| hypothetical protein EUBELI_01985 [Eubacterium eligens ATCC 27750]
 gi|238873258|gb|ACR72968.1| Hypothetical protein EUBELI_01985 [Eubacterium eligens ATCC 27750]
          Length = 235

 Score = 80.5 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 22/193 (11%), Positives = 84/193 (43%), Gaps = 7/193 (3%)

Query: 2   KHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ------SSDPVRSEFRR 54
           + + + +  +     F + +  +  ++  G  + +A +  + +      S   +  +F+ 
Sbjct: 43  RRIAEAKKKRILTKQFKDGIMAVSFALNVGYSIENAFSQAIDELILLYGSEADIVMKFKN 102

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           ++   +   +L + ++   +   ++++ +F+ V     + GG+L   + N + I++ +  
Sbjct: 103 IVVRINQNENLEDILNDFAKECKIEDIMYFAEVFRYAKRSGGDLISIIRNTADIIQQKTE 162

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +  +V+ +    +    ++ ++P  +   +  T+  ++  L  +  G +++       LI
Sbjct: 163 VATEVETIVSGKRMEQKVMSAIPALIILYLKVTAREFVEPLYGNLSGVLIMTCCLGVYLI 222

Query: 175 GIMVMRLMINFDV 187
             +  + ++N +V
Sbjct: 223 SNVWSKRIVNIEV 235


>gi|284031222|ref|YP_003381153.1| type II secretion system protein [Kribbella flavida DSM 17836]
 gi|283810515|gb|ADB32354.1| type II secretion system protein [Kribbella flavida DSM 17836]
          Length = 301

 Score = 80.5 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 71/183 (38%), Gaps = 2/183 (1%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R  + LD      + +  ++   + +  A+      ++  ++     +++   +   L
Sbjct: 94  ERRAIERLDALATWTEALRDTIAGAVGLEQAIPATAVNAAPAIKPGLNLLVDRLRIREPL 153

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++ R    +           + +     G  L E L+ L+   R+  +++ KV A   
Sbjct: 154 PSALMRFADDLDDPSADLIVAALVLNARLRGPGLREVLSALADSAREELDVRRKVAAERR 213

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
             + S  ++ ++   V+  +   +P Y+        G  +L +  A   +G++ +R +  
Sbjct: 214 STRRSVQVVVAITLLVAAALVLFNPAYVEP-YTSFVGQFVLFLVIALYAVGLVWLRKLAK 272

Query: 185 FDV 187
            +V
Sbjct: 273 IEV 275


>gi|89095464|ref|ZP_01168374.1| type II secretion system protein [Oceanospirillum sp. MED92]
 gi|89080267|gb|EAR59529.1| type II secretion system protein [Oceanospirillum sp. MED92]
          Length = 406

 Score = 80.5 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 18/170 (10%), Positives = 52/170 (30%), Gaps = 6/170 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   +++G+P+   + +  G      ++     +    + G+ LS ++++  
Sbjct: 68  DIAFFTRQMATMLKSGVPLLQGLEITAGGVDKQKLKDIIYEIKNDVNGGIDLSNALAKHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
            +            +    +  G L   L  ++      +++KAK++       A   + 
Sbjct: 128 DH-----FDDLYCNLVSAGEQSGALETMLDRIATYKEKLESLKAKIKKALTYPTAVVIVG 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             +   +   V             D     L  +  +        + L+ 
Sbjct: 183 IVVSAILLVKVVPQFESVFQNFGADLPAFTLFVIGLSETAQKWWWIALIA 232



 Score = 34.7 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 13/136 (9%), Positives = 36/136 (26%), Gaps = 5/136 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                     +  +  AG+P+ +A+    G S + +            +   +S   S  
Sbjct: 270 NASIARFARTLATTFAAGVPLVNALESAAGASGNALYR-----DAIIQIKNGVSTGQSLK 324

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                       +  +    +  G+L   L  ++    +  +      +  +E      +
Sbjct: 325 DAVTMTGIFPNMTVQMIAIGEEAGSLEMMLEKVADFYEELVDNAVDNLSSLLEPLIMVVL 384

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V  +     
Sbjct: 385 GVLVGGLVIAMYLPIF 400


>gi|326388860|ref|ZP_08210442.1| type II secretion system protein [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326206460|gb|EGD57295.1| type II secretion system protein [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 339

 Score = 80.5 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 61/148 (41%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + +LI KRT       P+ALD++V    AGL +  A + +  +   +   +  EF     
Sbjct: 176 VANLIGKRTNAIRKGLPDALDLLVICAEAGLTIDAAFSRVARELGRAYPELGDEFSLTAI 235

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +   + L+ +    T +    + G  L+ AL  LS   R+ + M+A
Sbjct: 236 ELSFLTERRSAFENLAYRVNLESMRGVVTTMIQTERYGTPLASALRVLSAEFRNERMMRA 295

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A  + A  +  +I  +   +  ++ 
Sbjct: 296 EEKAARLPAIMTIPLILFILPTLFVVIL 323


>gi|309778766|ref|ZP_07673539.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
 gi|308922474|gb|EFP68098.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
          Length = 308

 Score = 80.5 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 84/184 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +  +K   + L   P  LD +VR +  G  V  A       +  P+R+    + + Q 
Sbjct: 123 IWNRTRKINERLLAQLPGFLDGVVRLMSIGSAVPAAFQAASANTEQPLRNCLTAITQMQR 182

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L  ++  + +   + E+   S+V+ +  + GG     +   +  +RDR+  + ++ 
Sbjct: 183 AGKDLDAAVLTVGQQYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQRELF 242

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E + SAWIIG LP  V  ++   +  Y+  +  DP G  L+  A    ++G +++ 
Sbjct: 243 ALSAETRLSAWIIGLLPVVVGGVIIMFNAAYIMSMWRDPFGKTLILTAFGMEVLGAVMLA 302

Query: 181 LMIN 184
            +  
Sbjct: 303 RLAK 306


>gi|73542645|ref|YP_297165.1| type II secretion system protein [Ralstonia eutropha JMP134]
 gi|72120058|gb|AAZ62321.1| type II secretion system protein [Ralstonia eutropha JMP134]
          Length = 424

 Score = 80.5 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 56/168 (33%), Gaps = 6/168 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   ++AG+P+  ++ +I    ++         +      G S++ +  R
Sbjct: 84  EKDIAYFTRQLSTMLKAGIPLLQSIDIIARGHANPNFTQLLSDIRFDIESGSSMAAAFRR 143

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             R             +    + GG L   L  LS  +     +K+++++  +   A   
Sbjct: 144 HPR-----YFDTLYCNLIDAGEQGGILDSLLERLSLYMEKTIALKSQIKSAMIYPIAVLT 198

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +  ++   +   V     G  +    +     L+ +A +   +    +
Sbjct: 199 VAFAVTVILMLFVIPAFKGVFSSFGANLPAPTLVVIAISDFFVAYWYI 246


>gi|13474665|ref|NP_106234.1| hypothetical protein mlr5604 [Mesorhizobium loti MAFF303099]
 gi|14025420|dbj|BAB52020.1| mlr5604 [Mesorhizobium loti MAFF303099]
          Length = 339

 Score = 80.5 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 58/148 (39%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           + +   KR       +P+ALD+++  V +G+ V  A+  +  +       +  EF     
Sbjct: 169 VNNRATKRKQSIQMAWPDALDLMLICVESGMSVEAALRKVADEIGAQSVALAEEFILTNA 228

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   +     L+ V   S  +    + G  ++ AL  L+   RD++   A
Sbjct: 229 ELSYLQERKQAYENLANRTGLESVKSVSQALVQAERYGTPVAHALRVLAAESRDQRMNAA 288

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 289 EKKAAALPPKLTVPMILFFLPVLFAIIL 316


>gi|300690359|ref|YP_003751354.1| type IV pilus assembly transmembrane protein [Ralstonia
           solanacearum PSI07]
 gi|299077419|emb|CBJ50045.1| type IV pilus assembly transmembrane protein [Ralstonia
           solanacearum PSI07]
          Length = 421

 Score = 80.5 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 56/180 (31%), Gaps = 7/180 (3%)

Query: 2   KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ 59
           K     R  K    D       +   ++AG+P+  +V +I    ++         +    
Sbjct: 69  KRRRAARGKKITPKDIAYFTRQLSTMLKAGVPLLQSVDIIARGHANPNFTQLLTEIRVDI 128

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G S++++  R  +             +    + GG L   L  LS  +     +KA++
Sbjct: 129 ESGSSMAQAFRRHPK-----YFDSLYCNLIDAGEQGGILDALLERLSLYMEKSIALKAQI 183

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           ++  +   +   +   +   +   V     G             L+ +  +   +    +
Sbjct: 184 KSAMIYPISVLTVAFLVTVVLMIFVVPAFKGVFASFGATLPAPTLVVMGISDFFVQWWYI 243


>gi|254504440|ref|ZP_05116591.1| Bacterial type II secretion system protein F domain [Labrenzia
           alexandrii DFL-11]
 gi|222440511|gb|EEE47190.1| Bacterial type II secretion system protein F domain [Labrenzia
           alexandrii DFL-11]
          Length = 324

 Score = 80.5 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 4/159 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           +K+ I KR       +P+ALD+++  V +G+ +  A   +  +       +  E      
Sbjct: 166 LKNQIDKRKLGIQRAWPDALDLMLICVESGMSIEAAFQKVAEEIGAQSVELAEELSLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   + +   +  V      +    + G  +  A+ N++   R  +   A
Sbjct: 226 ELSYLSERRMAYENLAKRTGVDGVKNVMMALIQAERYGTPVGTAIRNMADDTRAERMQFA 285

Query: 118 KVQALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A S+  K     I+  LP     ++       M   
Sbjct: 286 EQKAASLPPKLTVPMIMFFLPVLFFVILTPAVIQAMGAF 324


>gi|82703469|ref|YP_413035.1| type II secretion system protein [Nitrosospira multiformis ATCC
           25196]
 gi|82411534|gb|ABB75643.1| type II secretion system protein [Nitrosospira multiformis ATCC
           25196]
          Length = 313

 Score = 80.5 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 68/166 (40%), Gaps = 4/166 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +  L+ +R  +  + FP+A+D++   V AGL +  A+  +  +    S  + SE   V  
Sbjct: 148 LGRLVLQRKRELFESFPDAIDLMTVCVEAGLGLDAAMVRVAEEMRLRSKALASELHLVSL 207

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +++  +     ++E+    +++    + G +++ +L   S  LR  + ++A
Sbjct: 208 ELRAGRTREQALRNLAMRTGVEEIEALVSMLVQADRFGTSVAASLRVHSDTLRTTRRLRA 267

Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162
           +  A  +        I    P  +  L+         VL+    G 
Sbjct: 268 EEAAAKIALKLLFPLIFFIFPSLLLVLMGPAFINIYRVLLPTLGGQ 313


>gi|88801096|ref|ZP_01116643.1| Type II secretory pathway, component PulF [Reinekea sp. MED297]
 gi|88776175|gb|EAR07403.1| Type II secretory pathway, component PulF [Reinekea sp. MED297]
          Length = 407

 Score = 80.5 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 23/197 (11%), Positives = 62/197 (31%), Gaps = 14/197 (7%)

Query: 1   MKHLIKKR--------TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF 52
           +K L KKR             +D       +   ++AG+P+  +  ++     +P  +E 
Sbjct: 47  VKKLQKKRADINLFGGKKVKTEDIAVFTRQMATMMKAGVPLMRSFEIVAEGLDNPKMAEL 106

Query: 53  RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112
              ++    G                +        +    +  G L   L  ++      
Sbjct: 107 VTSMKNNVAGGG----SFGSALRQHPKYFDDLYCSLIESGEQAGALETMLDRVAIYKEKS 162

Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP--RGHMLLGVAAA 170
           + +K KV++          +   +   +   V  T     +    D      +++ ++++
Sbjct: 163 EAVKKKVKSAMKYPATVLVVAAIVTIILLLKVVPTFAEMFSNFGADLPVPTQIVMNMSSS 222

Query: 171 FMLIGIMVMRLMINFDV 187
               GI+   +++   +
Sbjct: 223 LQENGIIWGSIILAIAI 239



 Score = 37.8 bits (86), Expect = 0.75,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 40/128 (31%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +  +  AG+P+  A+    G +S  +  E   +     +      + S        + 
Sbjct: 279 RTLSTTFAAGVPLVQALESAAG-ASGNIVYESAIMQVRNEVETGSELATS----MKDTEV 333

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
                  +    +  G L + L   + I  +  + + +     ME    A++   +   V
Sbjct: 334 FPSMLVQMVSIGEQSGALDDMLGKAAIIYEEEVDNQVEGLTAMMEPMIMAFLGVVVGGLV 393

Query: 141 STLVYFTS 148
            ++     
Sbjct: 394 VSMYLPIF 401


>gi|74318387|ref|YP_316127.1| type IV pilus assembly protein PilC [Thiobacillus denitrificans
           ATCC 25259]
 gi|74057882|gb|AAZ98322.1| type IV pilus assembly protein PilC [Thiobacillus denitrificans
           ATCC 25259]
          Length = 407

 Score = 80.5 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 52/171 (30%), Gaps = 6/171 (3%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSE 67
                 D       +   ++AG+P+  +  ++    S+  ++     +      G SL++
Sbjct: 62  KRITEKDVALFTRQLATMMKAGVPLLQSFEIVARGHSNPSMQRLLMEIKADIEKGSSLTQ 121

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           S +R                +    +  G L   L  L+        +K K+++      
Sbjct: 122 SFARHPL-----YFDALFCNLVGAGEAAGILEAVLDRLAVYKEKILAIKGKIKSALFYPV 176

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +   +   +   +   V        +    D  G  L+ +A +   +    
Sbjct: 177 SIIVVAFVITAIIMIFVIPAFKELFSSFGTDLPGPTLVVMAISDFFVTWWW 227



 Score = 39.3 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 43/131 (32%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+ +A+  + G S + V  E  +++      G +L+ ++    R   
Sbjct: 276 WTRTLSTMFAAGVPLVEALESVAGASGNQVFVEATQKIRGEVATGTALTVAMQNSGR--- 332

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     ++   +  G+L   L  ++       +   +  +  ME      +   + 
Sbjct: 333 ---FPNMVLQMAAIGEESGSLDAMLGKVADFYESEVDDAVEALSSLMEPLIMVVLGTLIG 389

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 390 GMVIAMYLPIF 400


>gi|91776494|ref|YP_546250.1| type II secretion system protein [Methylobacillus flagellatus KT]
 gi|91710481|gb|ABE50409.1| type II secretion system protein [Methylobacillus flagellatus KT]
          Length = 402

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 48/161 (29%), Gaps = 6/161 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   ++AG+P+  A  ++    S+  V      +      G SLS++  +      
Sbjct: 68  FTRQLATMMKAGVPLLQAFDIVGKGHSNPAVSKLLGDIKADVETGSSLSQAFRKYPL--- 124

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G L   L  L+        +K K+++      +   +   + 
Sbjct: 125 --YFDNLFCNLVGAGEQAGILDSLLDRLATYKEKILAIKGKIKSALFYPISIIVVAFVIT 182

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             +   V        +    D     ++ +A +   +    
Sbjct: 183 AVIMIFVIPAFKELFSSFGADLPAPTVMVMAISDFFVDYWW 223



 Score = 42.4 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 42/142 (29%), Gaps = 11/142 (7%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLS 66
           R A            +     AG+P+ +A+  + G S + V     ++V      G SL+
Sbjct: 265 RKATIAR----FSRTLSTMFAAGVPLVEALDSVAGASGNRVYHDATKKVQSEISTGASLT 320

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++         +        +    +  G L   L  ++       +   +  +  ME 
Sbjct: 321 VAMQN------TEVFPNMVLQMVAIGEESGALDSMLGKVADFYEGEVDDAVEALSSLMEP 374

Query: 127 KASAWIIGSLPFCVSTLVYFTS 148
                +   +   V  +     
Sbjct: 375 IIMVVLGTLIGGLVIAMYLPIF 396


>gi|304405043|ref|ZP_07386703.1| Type II secretion system F domain protein [Paenibacillus
           curdlanolyticus YK9]
 gi|304345922|gb|EFM11756.1| Type II secretion system F domain protein [Paenibacillus
           curdlanolyticus YK9]
          Length = 274

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 86/190 (45%), Gaps = 7/190 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA-------VAVIVGQSSDPVRSEFRRVI 56
           L++KR  +    F  AL  +  S+ AG  V +A       + ++    +  +  EF  + 
Sbjct: 84  LLEKRRVRLQLQFKEALYSVTSSLAAGRSVENAFIAAEADLQLLYPGGTADIVREFAMIR 143

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
                G +L   +S+      L+E++ F  V S   + GG+L + +   S+++ ++ +++
Sbjct: 144 HRMENGETLESGLSQFANRAQLEEITQFVDVFSTCKRTGGDLVDVIRRTSQVIGEKLDIQ 203

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            ++  +  + +  + I+ ++PF     +   +P Y   L + P G++LL +     +   
Sbjct: 204 QEIAVMLAQKRFESRILTAVPFVFIAGLNLAAPDYTGPLYSSPLGYVLLTLLLLGFVGCG 263

Query: 177 MVMRLMINFD 186
            ++R ++   
Sbjct: 264 ALIRKLMMIR 273


>gi|256824883|ref|YP_003148843.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547]
 gi|256688276|gb|ACV06078.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547]
          Length = 286

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 66/173 (38%), Gaps = 3/173 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           D +P+ +D +   VRAG+ + +A+A +  +  + +R  F               S+  + 
Sbjct: 108 DAWPDCVDHVASGVRAGMALPEALAQLAVRGPEELRPAFAGFAHDYRATGRFHVSLDALK 167

Query: 74  RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + +  +  G +L   L  LS  LR+  + +++++A       +A +
Sbjct: 168 ERLSDPVADRLVESLRIAREVGGSDLGVVLRTLSSFLREEAHTRSEMEARQSWTVNAARL 227

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             + P+ V  ++            N   G ++L +     +   ++M  +   
Sbjct: 228 GLAAPWIVLAMLATRGDSLAA--YNSTTGALVLVLGGLVSVGAYLLMMRLGRI 278


>gi|302391033|ref|YP_003826853.1| type II secretion system F domain protein [Acetohalobium arabaticum
           DSM 5501]
 gi|302203110|gb|ADL11788.1| Type II secretion system F domain protein [Acetohalobium arabaticum
           DSM 5501]
          Length = 306

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 74/155 (47%), Gaps = 2/155 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I +R  K     P+ LD++  SV AGL    A+  +V + + P+  EF R+++   
Sbjct: 148 LSKKISERQKKMQQALPDVLDLLTVSVEAGLGFDSALVRVVDKIAGPISEEFERLLQEIR 207

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G    +++  +     +++++ F T I    +LG ++ + L   S+ +R ++  +A+ Q
Sbjct: 208 MGKPRRDAMRDLGERTNVEDLTNFITAIVQADKLGVSIGKVLRVQSKQIRQKRRQRAEAQ 267

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           A+    K    ++  +   +  ++    P  + V+
Sbjct: 268 AMKAPIKMLLPLVFFIFPTLFIIL--LGPAAIKVM 300


>gi|304390832|ref|ZP_07372784.1| type II secretion system protein [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304325715|gb|EFL92961.1| type II secretion system protein [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 295

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 74/175 (42%), Gaps = 3/175 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
             +PN +D +V  VRAGL + + +  +  ++   +R  F         G +L  S+  + 
Sbjct: 116 KAWPNLVDDLVSGVRAGLSLGETLLEVAARAPKSLRVPFAHFAADYRAGGNLDASLKILK 175

Query: 74  RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + + +Q  G +L   L +L  +LR  +  + +V A        A +
Sbjct: 176 HELADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLARQSWTVTGARL 235

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
             + P+ +  L+  + PG + V  + P G M+L V A    +  ++M  +   +V
Sbjct: 236 AAASPWIILALL-LSRPGTLEV-YSTPVGSMILLVGALVSALAYLMMLRLGRLEV 288


>gi|257784835|ref|YP_003180052.1| type II secretion system protein [Atopobium parvulum DSM 20469]
 gi|257473342|gb|ACV51461.1| type II secretion system protein [Atopobium parvulum DSM 20469]
          Length = 272

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 70/174 (40%), Gaps = 1/174 (0%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           +     P+    I  ++ +GL +S ++  +   +   V   F         G  + E+I 
Sbjct: 96  EIAHMMPSIFRTIAVALGSGLTLSQSIEYVSKHTEGVVSESFCIADMQIKCGFPIEEAIE 155

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            +   +    V+  ++ + +  + G  L   L   + ++  ++  +  +   + + + SA
Sbjct: 156 DLAERLDAPGVNLLASALVISHRTGSPLKNLLQKTAELVELQEKNQRLIATKTAQVRLSA 215

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            I+  LP  +  ++   SP +   L   P G +   +A     I ++++R ++ 
Sbjct: 216 RIVCLLPVVLLIILSLVSPDFQKGLF-TPSGVICTVIAMIMDCIALLIIRSIMK 268


>gi|240143494|ref|ZP_04742095.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
 gi|257204528|gb|EEV02813.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
          Length = 245

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 74/192 (38%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55
                +R  K + +F +A+  +  ++ AG  +  A      +          +  E  ++
Sbjct: 54  NKKRDERAKKLMIEFRDAIQAVAAALLAGYSIEHAWKEAEREIMDLYGKEAMITKELIQM 113

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                L  ++ E +  +     ++E+  F+ +     + GG+  + +   +  +  +  +
Sbjct: 114 NAEIKLNRNVEEILHDLAVRSGVEEIQSFAEIFGFAKRSGGDFPQIIRTTAARISAKIEV 173

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + +V  +    K    I+  +PF +   +   S  +++ L  +  G +++  A    +  
Sbjct: 174 EREVDTVIAGKKLEGKIMSVMPFFILAYLNLASREFIDPLYGNLAGVLVMSAALLVFVGA 233

Query: 176 IMVMRLMINFDV 187
           + + R + +  V
Sbjct: 234 MAINRRISDIRV 245


>gi|85705157|ref|ZP_01036257.1| type II/IV secretion system protein, TadC subfamily protein
           [Roseovarius sp. 217]
 gi|85670479|gb|EAQ25340.1| type II/IV secretion system protein, TadC subfamily protein
           [Roseovarius sp. 217]
          Length = 325

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 69/158 (43%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +    +KR  +  D FP++LD+++  + AG  +  ++  +  +       +  EF  V  
Sbjct: 162 ITKRQQKRQEEIQDGFPDSLDMMLVCIEAGQSMDQSIIRVASEMRASYPALAEEFEIVSL 221

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G      ++ M     +Q+++ F TV+      G ++ EAL   +  +RD++ M+A
Sbjct: 222 QIKAGRDKPSVLNEMAERCGVQDITSFVTVMVQSQTFGTSIGEALRVYAAEMRDKRVMRA 281

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A  +  K +   +      +  ++    P  + ++
Sbjct: 282 EEKANKLPTKMTLATMMLTVPPLLIIL--VGPSVLGIM 317


>gi|209551764|ref|YP_002283681.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537520|gb|ACI57455.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 328

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 62/148 (41%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + + + KR       +P+ALD+++  V +G+ +  A+  +  +    S P+  E      
Sbjct: 170 ISNRMGKRQHSIKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPPLAEEMVLTTA 229

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     ++  +     ++ V   +  +    + G  +++AL  L++  RD +  +A
Sbjct: 230 ELSFLPDRRVALENLATRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEA 289

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 290 EKKAAALPPKLTVPMILFFLPVLIAVIL 317


>gi|325678292|ref|ZP_08157920.1| type II secretion system protein F domain protein [Ruminococcus
           albus 8]
 gi|324110055|gb|EGC04243.1| type II secretion system protein F domain protein [Ruminococcus
           albus 8]
          Length = 303

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 77/187 (41%), Gaps = 7/187 (3%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIETQH 60
           KR       F + LD +  SV +G     A                 +  E   +++ Q 
Sbjct: 118 KRRNDIRRQFMDLLDALAASVASGSNAIKAFEAAKEDLVLQYGEDSIIVQELTLILDGQK 177

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
             + +S S+    +   ++E+  F+ V  +  + GG+ S+ + +   IL  + N++ +++
Sbjct: 178 NFIDISASLIDFGKRSGIKEIESFAQVFELSHRKGGDFSKVIRDSYEILYSKINIEMEIE 237

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
                 +    I+ ++PF +  ++   SP +       P G + + V    ++I  ++ R
Sbjct: 238 TKIAATRNELNIMLAMPFILVGMMKSMSPDF-AYNFRTPTGALGITVGLVIVVISYLLGR 296

Query: 181 LMINFDV 187
            + + +V
Sbjct: 297 KITSIEV 303


>gi|242311994|ref|ZP_04811011.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
 gi|254265316|ref|ZP_04956181.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
 gi|242135233|gb|EES21636.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
 gi|254216318|gb|EET05703.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
          Length = 313

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 4/165 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   I  R    ++DFP+ALD++   V AGL +  A+  +  +    S  V  E   ++ 
Sbjct: 148 LARRIAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLL 207

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +      ++V  FST++    + G ++  +L  LS  LR ++ M+A
Sbjct: 208 EMRSGFTKETALRNLALRTGAEDVDAFSTMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 267

Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           + +A  +        I    P  ++ L+          L+    G
Sbjct: 268 EERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRTLLPTMAG 312


>gi|254441173|ref|ZP_05054666.1| Bacterial type II secretion system protein F domain [Octadecabacter
           antarcticus 307]
 gi|198251251|gb|EDY75566.1| Bacterial type II secretion system protein F domain [Octadecabacter
           antarcticus 307]
          Length = 326

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 69/148 (46%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +     +R  + ++ FP++LD+++  V AG  +  ++  +  +       +  E++ V  
Sbjct: 163 VGKRQAERQLEMINGFPDSLDMMLVCVEAGQSLDQSIIRVAHELKSGFPALAEEYQMVSH 222

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G   ++ +  M     + ++S F TV+    Q G +++EAL   S  +RD++ M+A
Sbjct: 223 EMKAGKDKTQVLRDMAERTGVADISSFVTVLIQSQQFGTSIAEALRVFSAEMRDKRVMRA 282

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +   +      +  ++ 
Sbjct: 283 EEKANTLPTKMTLATMLLTVPPLLIILI 310


>gi|53723215|ref|YP_112200.1| hypothetical protein BPSS2198 [Burkholderia pseudomallei K96243]
 gi|76819357|ref|YP_336475.1| type II secretion system protein [Burkholderia pseudomallei 1710b]
 gi|126455503|ref|YP_001076997.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
 gi|167744183|ref|ZP_02416957.1| type II secretion system protein [Burkholderia pseudomallei 14]
 gi|167821382|ref|ZP_02453062.1| type II secretion system protein [Burkholderia pseudomallei 91]
 gi|167829724|ref|ZP_02461195.1| type II secretion system protein [Burkholderia pseudomallei 9]
 gi|167851191|ref|ZP_02476699.1| type II secretion system protein [Burkholderia pseudomallei B7210]
 gi|167899821|ref|ZP_02487222.1| type II secretion system protein [Burkholderia pseudomallei 7894]
 gi|167916485|ref|ZP_02503576.1| type II secretion system protein [Burkholderia pseudomallei 112]
 gi|167924342|ref|ZP_02511433.1| type II secretion system protein [Burkholderia pseudomallei BCC215]
 gi|217424204|ref|ZP_03455703.1| type II secretion system protein [Burkholderia pseudomallei 576]
 gi|226194113|ref|ZP_03789713.1| type II secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237510430|ref|ZP_04523145.1| type II secretion system protein [Burkholderia pseudomallei
           MSHR346]
 gi|254182575|ref|ZP_04889169.1| type II secretion system protein [Burkholderia pseudomallei 1655]
 gi|254187127|ref|ZP_04893642.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|254192523|ref|ZP_04898962.1| type II secretion system protein [Burkholderia pseudomallei S13]
 gi|254296491|ref|ZP_04963947.1| type II secretion system protein [Burkholderia pseudomallei 406e]
 gi|52213629|emb|CAH39683.1| putative membrane protein [Burkholderia pseudomallei K96243]
 gi|76583830|gb|ABA53304.1| Bacterial type II secretion system protein, probably involved in
           Flp pilus synthesis [Burkholderia pseudomallei 1710b]
 gi|126229271|gb|ABN92684.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
 gi|157806389|gb|EDO83559.1| type II secretion system protein [Burkholderia pseudomallei 406e]
 gi|157934810|gb|EDO90480.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|169649281|gb|EDS81974.1| type II secretion system protein [Burkholderia pseudomallei S13]
 gi|184213110|gb|EDU10153.1| type II secretion system protein [Burkholderia pseudomallei 1655]
 gi|217392669|gb|EEC32692.1| type II secretion system protein [Burkholderia pseudomallei 576]
 gi|225933806|gb|EEH29793.1| type II secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|235002635|gb|EEP52059.1| type II secretion system protein [Burkholderia pseudomallei
           MSHR346]
          Length = 319

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 4/165 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   I  R    ++DFP+ALD++   V AGL +  A+  +  +    S  V  E   ++ 
Sbjct: 154 LARRIAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLL 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +      ++V  FST++    + G ++  +L  LS  LR ++ M+A
Sbjct: 214 EMRSGFTKETALRNLALRTGAEDVDAFSTMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 273

Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           + +A  +        I    P  ++ L+          L+    G
Sbjct: 274 EERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRTLLPTMAG 318


>gi|293606487|ref|ZP_06688845.1| type II secretion system protein [Achromobacter piechaudii ATCC
           43553]
 gi|292815110|gb|EFF74233.1| type II secretion system protein [Achromobacter piechaudii ATCC
           43553]
          Length = 307

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 74/184 (40%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR  + +   P  LD IVR +  G  +  A       + +P+R           
Sbjct: 122 LWLRADKRRRRMIGQLPAFLDNIVRLITIGNSMGAAFQTAAATTDEPLREVVETAASLSR 181

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
               L  ++ ++ R   L+E+   + V+S+  + GG   + L  ++  +RD    + ++ 
Sbjct: 182 SAKELDAALVQVSRMYGLKELYMVAAVVSLAMRFGGRSDQVLERMAAFMRDVAQARNELT 241

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A S E + SAWI+  LP  ++  +   +      L  DP G  +L  A    + G   + 
Sbjct: 242 ASSAEVRLSAWILALLPVGIAGFIIVANNKLFMGLWEDPLGFKMLLTAVVLQIGGCYWLY 301

Query: 181 LMIN 184
            M  
Sbjct: 302 RMAK 305


>gi|294012437|ref|YP_003545897.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
 gi|292675767|dbj|BAI97285.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
          Length = 330

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 60/148 (40%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + + I+KR+A      P+ALD++V    AGL V  A + +  +   +   +  EF     
Sbjct: 172 IDNKIQKRSAAIRKGLPDALDLLVICAEAGLTVDAAFSRVARELGKAYPELGDEFHLTAI 231

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +   + L  +    T +    + G  L+ AL  LS   R  + M+A
Sbjct: 232 ELSFLTERRMAFENLATRVKLDAIKGVVTTMIQTEKYGTPLASALRVLSAEFRHERMMRA 291

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A  + A  +  +I  +   +  ++ 
Sbjct: 292 EEKAARLPAIMTVPLILFILPTLFVVIL 319


>gi|327543264|gb|EGF29697.1| flp pilus assembly protein TadC [Rhodopirellula baltica WH47]
          Length = 328

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 63/148 (42%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +  +  KR  K     P+ALD++V  V AGL +  A+  +  +       +  EF     
Sbjct: 168 LGFMASKRREKIFLGLPDALDLMVVCVEAGLGLDQALRKVAEEMQKSHKAIGEEFSISNH 227

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              LG   SE +S +     + ++   ++++    + G ++++AL   S  +R ++   A
Sbjct: 228 QLQLGSPRSEVLSGLGYRSGVDDLKQLASILIQADKFGSSVAQALRVQSDSMRTKRRQIA 287

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A     K    ++  +   +  ++ 
Sbjct: 288 EEKAAKTAVKMIFPLVLFIFPGIFVVLV 315


>gi|119472644|ref|ZP_01614635.1| type IV pilus biogenesis protein PilC [Alteromonadales bacterium
           TW-7]
 gi|119444848|gb|EAW26149.1| type IV pilus biogenesis protein PilC [Alteromonadales bacterium
           TW-7]
          Length = 409

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/171 (12%), Positives = 54/171 (31%), Gaps = 6/171 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       I   + AG+P+  A+ +I    ++  V      + +    G  LS+++ + 
Sbjct: 70  KDIALVTRQIATMLMAGVPLIQAIEMIGTGSTNKSVGKLMETIGDEVKAGQPLSQALRKH 129

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R             +    +  G L +    ++      + +K+K++       +   I
Sbjct: 130 PR-----YFDDLYCDLVASGEQSGALDKIFDRVALYKEKSEALKSKIKKAMFYPISVLVI 184

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            G +   +   V        +    +     L  +  +  +     M L+ 
Sbjct: 185 AGIVTSILLIFVVPQFQDIFSGFGAELPAFTLFVIGISEFMQAYWWMILIA 235



 Score = 35.1 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 40/129 (31%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +  +  AG+P+ DA+    G S + V       +      G  ++ ++         +
Sbjct: 281 RTLSTTFAAGVPLVDALDSAAGASGNAVYRYAILDIKAEVSSGNQMNWAMRN------SK 334

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                   +    +  G+L   LA ++ I     +      +  +E    A +   +   
Sbjct: 335 IFPDMVIQMVAIGEESGSLDGMLAKVATIYEQEVDDAVDGLSSLLEPLIMAVLGVLVGGL 394

Query: 140 VSTLVYFTS 148
           +  +     
Sbjct: 395 IVAMYLPIF 403


>gi|326205012|ref|ZP_08194862.1| Flp pilus assembly protein TadB-like protein [Clostridium
           papyrosolvens DSM 2782]
 gi|325984817|gb|EGD45663.1| Flp pilus assembly protein TadB-like protein [Clostridium
           papyrosolvens DSM 2782]
          Length = 247

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 86/192 (44%), Gaps = 7/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA-------VIVGQSSDPVRSEFRR 54
           K +I KR  +    F + L  +  S+ AG P+  +         V+       +  E + 
Sbjct: 55  KQIIYKRKRELNLQFKDLLISLASSLSAGKPLEKSFVGALSDLYVLYPSDDAHIVRETKI 114

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           +I    L +S+ ++IS       + ++  FS VI +  + GGNL EA+ N SRI+ ++  
Sbjct: 115 IINKLSLNVSIEDAISEFADRSDIDDIKNFSDVIIICKRTGGNLVEAIKNSSRIISEKIE 174

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           MK +++ L    +    I+  +P  +  ++  T+  Y+  +     G + + +    +++
Sbjct: 175 MKQEIETLLSSRRFEQKILNIMPIAMIFILSTTAGEYIKPVFITVTGRIAVTLCLVLLIV 234

Query: 175 GIMVMRLMINFD 186
             ++   ++N  
Sbjct: 235 AYLISNKIMNIK 246


>gi|85713510|ref|ZP_01044500.1| type II secretion system protein [Nitrobacter sp. Nb-311A]
 gi|85699414|gb|EAQ37281.1| type II secretion system protein [Nitrobacter sp. Nb-311A]
          Length = 325

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 60/148 (40%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           +K+ I KR       FP+ALD+++  + +G+ +  A   +  +  +    +  EF     
Sbjct: 166 LKNAITKRQLSIKRAFPDALDLLLICLESGMSIEVAFRKVSTEIGNQSVALAEEFTLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +     ++ V      +    + G  L+++L  +++  RD +  +A
Sbjct: 226 ELSYLQDRKIAYENLANRTGVEGVKSVCLALQQSERYGTPLAQSLRVMAQENRDMRMTEA 285

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 286 EKKAAALPPKLTVPMIVFFLPVLFVVIL 313


>gi|239833232|ref|ZP_04681561.1| type II secretion system protein [Ochrobactrum intermedium LMG
           3301]
 gi|239825499|gb|EEQ97067.1| type II secretion system protein [Ochrobactrum intermedium LMG
           3301]
          Length = 333

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 63/157 (40%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + +   KR       +P+ALD+++  V +G+    A   +  +    S  +  E      
Sbjct: 169 VSNRATKRKQSIRRAWPDALDLMLICVESGMSTEAAFRRVADEIGIQSVELAEELMLTNA 228

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   +     L+ V   +  +    + G  +++AL  LS+  RD + ++A
Sbjct: 229 ELSFLPERRQAYENLANRTGLEPVKSVTQALIQAERYGTPVAQALRTLSQESRDLRLLEA 288

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           + +A ++  K +  +I      +  ++    P ++ +
Sbjct: 289 EKKAAALPPKLTVPMIVFFLPVLFIVI--LGPAFIQI 323


>gi|134281772|ref|ZP_01768479.1| type II secretion system protein [Burkholderia pseudomallei 305]
 gi|134246834|gb|EBA46921.1| type II secretion system protein [Burkholderia pseudomallei 305]
          Length = 313

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 68/165 (41%), Gaps = 4/165 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   I  R    ++DFP+ALD++   V AGL +  A+  +  +    S  V  E   ++ 
Sbjct: 148 LARRIAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLL 207

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +      ++V  FS ++    + G ++  +L  LS  LR ++ M+A
Sbjct: 208 EMRSGFTKETALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 267

Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           + +A  +        I    P  ++ L+          L+    G
Sbjct: 268 EERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRTLLPTMAG 312


>gi|146276356|ref|YP_001166515.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145554597|gb|ABP69210.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 323

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 75/161 (46%), Gaps = 4/161 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +K   ++R  + +  FP+ALD+++  V AG  +  ++  +  +S      +  EF  V  
Sbjct: 162 IKRRAQERHDQIVAGFPDALDMMLVCVEAGQSLDQSILRVARESASGYPALAEEFEMVAH 221

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G      +  M   + + +VS F T +   +  G +++EAL   S  +RD++ M+A
Sbjct: 222 EVKAGKERVAVLKDMAERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRA 281

Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + +A ++  K +   ++ ++P  +  L+  +  G    L  
Sbjct: 282 EEKANTLPTKLTLGTMLLTVPPLMLILIGPSVYGIATQLGG 322


>gi|126443620|ref|YP_001064084.1| type II secretion system protein [Burkholderia pseudomallei 668]
 gi|167908138|ref|ZP_02495343.1| type II secretion system protein [Burkholderia pseudomallei NCTC
           13177]
 gi|126223111|gb|ABN86616.1| type II secretion system protein [Burkholderia pseudomallei 668]
          Length = 319

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 68/165 (41%), Gaps = 4/165 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   I  R    ++DFP+ALD++   V AGL +  A+  +  +    S  V  E   ++ 
Sbjct: 154 LARRIAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLL 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +      ++V  FS ++    + G ++  +L  LS  LR ++ M+A
Sbjct: 214 EMRSGFTKETALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 273

Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           + +A  +        I    P  ++ L+          L+    G
Sbjct: 274 EERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRTLLPTMAG 318


>gi|332671125|ref|YP_004454133.1| Type II secretion system F domain-containing protein [Cellulomonas
           fimi ATCC 484]
 gi|332340163|gb|AEE46746.1| Type II secretion system F domain protein [Cellulomonas fimi ATCC
           484]
          Length = 286

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 63/171 (36%), Gaps = 3/171 (1%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           +P  +D +   +RAGL + +A+A I  +    +R  F    E         E +  +   
Sbjct: 110 WPEVVDHLASGIRAGLALPEALAQIGERGPVELREPFVAFAEDYRATGRFGECLDLLKAR 169

Query: 76  MPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           +           + +     G +L   L  LS  LR+    + +++A       +A +  
Sbjct: 170 LADPVADRIVEALRMTRDVGGTDLGRLLRTLSTFLREDLRTRGELEARQSWTVNAARLAA 229

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           + P+ V  L+   S        +   G ++L   AA  ++   +M  +   
Sbjct: 230 AAPWLVLGLLATRSEAAAA--YDSTAGLLVLAAGAASTVVAYALMLRIARL 278


>gi|32473987|ref|NP_866981.1| secretion system protein TadC [Rhodopirellula baltica SH 1]
 gi|32444524|emb|CAD74523.1| probable secretion system protein TadC [Rhodopirellula baltica SH
           1]
          Length = 328

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 63/148 (42%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +  +  KR  K     P+ALD++V  V AGL +  A+  +  +       +  EF     
Sbjct: 168 LGFMASKRREKIFLGLPDALDLMVVCVEAGLGLDQALRKVAEEMQKSHKAIGEEFSISNH 227

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              LG   SE +S +     + ++   ++++    + G ++++AL   S  +R ++   A
Sbjct: 228 QLQLGSPRSEVLSGLGYRSGVDDLKQLASILIQADKFGSSVAQALRVQSDSMRTKRRQIA 287

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A     K    ++  +   +  ++ 
Sbjct: 288 EEKAAKTAVKMIFPLVLFIFPGIFVVLV 315


>gi|116249986|ref|YP_765824.1| component of pilus protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115254634|emb|CAK05708.1| putative component of pilus protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 328

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 61/148 (41%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + + + KR       +P+ALD+++  V +G+ +  A+  +  +    S  +  E      
Sbjct: 170 ISNRMGKRQHSIKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPALAEEMVLTTA 229

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     ++  +     ++ V   +  +    + G  +++AL  L++  RD +  +A
Sbjct: 230 ELSFLPDRRVALENLATRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEA 289

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 290 EKKAAALPPKLTVPMILFFLPVLIAVIL 317


>gi|56697924|ref|YP_168295.1| TadC family type II/IV secretion system protein [Ruegeria pomeroyi
           DSS-3]
 gi|56679661|gb|AAV96327.1| type II/IV secretion system protein, TadC subfamily [Ruegeria
           pomeroyi DSS-3]
          Length = 326

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 75/158 (47%), Gaps = 4/158 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +   +  R       FP+ALD+++  V AG  +  ++  +  +   S   +  EF  V  
Sbjct: 164 ITRRVDTRKENITRAFPDALDMLLVCVEAGQSLDQSIVRVSKELRASYPDLADEFEMVAY 223

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G    + +  M     + +VS F TV+   SQ G +++EAL   +  +RD++ M+A
Sbjct: 224 EMKAGKEKDKVLRDMGTRCGVVDVSSFVTVMIQSSQFGTSIAEALRVYAGEMRDKRVMRA 283

Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154
           +  A  +  K + A ++ ++P  +  LV  ++ G M++
Sbjct: 284 EEAANKLPTKMTLATMMLTVPPLLIILVGPSAKGIMDL 321


>gi|284991838|ref|YP_003410392.1| Type II secretion system F domain-containing protein
           [Geodermatophilus obscurus DSM 43160]
 gi|284065083|gb|ADB76021.1| Type II secretion system F domain protein [Geodermatophilus
           obscurus DSM 43160]
          Length = 295

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 1/158 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R      +  + LD +  +V AGL    A+A        P+  E  R ++   
Sbjct: 138 LYSRGQERQQAIALELADTLDQMTIAVEAGLGFEAAMARAGRNGRGPLAEELVRTLQDIA 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G    E+   +     + ++  F   +      G ++++ L   +  +R ++  +A+ +
Sbjct: 198 VGQPRREAYLALAERTAVPDLRRFIRAVVQADAYGVSIADVLRTQAAEMRLKRRQRAEEK 257

Query: 121 ALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           A+ +  K     I+  LP     L+             
Sbjct: 258 AMQIPVKVIFPLILCILPTLFIVLLGPAVLDIAAAFGG 295


>gi|332188365|ref|ZP_08390090.1| bacterial type II secretion system F domain protein [Sphingomonas
           sp. S17]
 gi|332011594|gb|EGI53674.1| bacterial type II secretion system F domain protein [Sphingomonas
           sp. S17]
          Length = 332

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 68/166 (40%), Gaps = 4/166 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +K+ I KRT       P+ALD++V    AGL V  A A +  +   +   +  EF+    
Sbjct: 167 LKNQIDKRTHAIRKGLPDALDLMVICAEAGLTVDAAFARVARELRRAYPELGDEFQLTSV 226

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    +++  +   + L  +    T +    + G  L+ +L  LS   R+ + M+A
Sbjct: 227 ELGFLTDRRQALENLSMRVNLDALRGVVTTMIQTEKYGTPLASSLRVLSAEFRNERMMRA 286

Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162
           + +A  + A  +   I+  LP     ++        + L++   G 
Sbjct: 287 EEKAARLPAIMTVPLILFILPTLFIVILGPAGCSINDTLMSTMGGK 332


>gi|51245380|ref|YP_065264.1| hypothetical protein DP1528 [Desulfotalea psychrophila LSv54]
 gi|50876417|emb|CAG36257.1| hypothetical membrane protein [Desulfotalea psychrophila LSv54]
          Length = 283

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 67/158 (42%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +K     R  +    FP+A+D+++  V AG+ +  A+  +  +   +S  +  EF+ +  
Sbjct: 122 LKIRGHYRRKELDRTFPDAIDLLMVCVEAGMGIDSAIRRVAQEIHITSPELAKEFKILSL 181

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G   +E +  + +   L+++    +++    + G  ++ AL   +  +R ++  + 
Sbjct: 182 ELKTGKPRNECLKNLAKRTNLRDIDNLVSLLIQAQKYGTGVANALRIHAEEMRQKRYSRL 241

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  A  +  K    +I  +   +  ++    P  + V 
Sbjct: 242 EEMAAKLPVKLVIPLIFFIFPALFLVI--LGPAMIRVF 277


>gi|327194689|gb|EGE61535.1| pilus component protein [Rhizobium etli CNPAF512]
          Length = 328

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 62/148 (41%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + + + KR       +P+ALD+++  V +G+ +  A+  +  +    S P+  E      
Sbjct: 170 ISNRMGKRQHSIKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPPLAEEMVLTTA 229

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     ++  +     ++ V   +  +    + G  +++AL  L++  RD +  +A
Sbjct: 230 ELSFLPDRRVALENLAMRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEA 289

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 290 EKKAAALPPKLTVPMILFFLPVLIAVIL 317


>gi|325673436|ref|ZP_08153127.1| type II secretion system protein [Rhodococcus equi ATCC 33707]
 gi|325555457|gb|EGD25128.1| type II secretion system protein [Rhodococcus equi ATCC 33707]
          Length = 296

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 58/158 (36%), Gaps = 1/158 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   ++R A       + LD +  +V AGL    A+         P+  EF R ++   
Sbjct: 138 LQSRGQERQAAIELALADTLDQMTIAVEAGLGFEAAMQRAAKNGKGPLAEEFIRTLQDIQ 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S   +   +        +  F   +    + G  ++E L   +  +R ++   A+ +
Sbjct: 198 MGQSRRIAYLDLAARTKAPNLRRFLRAVIQADEYGVAIAEVLRTQASEMRLKRRQSAEEK 257

Query: 121 ALSMEAKA-SAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           A+ +  K     +   LP     ++       M VL  
Sbjct: 258 AMKVPVKVLFPLMTCILPTIFIVILGPAVINMMEVLGG 295


>gi|299065626|emb|CBJ36798.1| type IV pilus assembly transmembrane protein [Ralstonia
           solanacearum CMR15]
          Length = 421

 Score = 79.8 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/177 (11%), Positives = 55/177 (31%), Gaps = 6/177 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60
           +    +       D       +   ++AG+P+  +V +I    ++         +     
Sbjct: 70  RRRAARGKKIVPKDIAYFTRQLSTMLKAGVPLLQSVDIIARGHANPNFTQLLTEIRVDIE 129

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S++++  R  ++            +    + GG L   L  LS  +     +KA+++
Sbjct: 130 SGSSMAQAFRRHPQH-----FDSLYCNLIDAGEQGGILDALLERLSMYMEKSIALKAQIK 184

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +  +   +   +   +   +   V     G             L+ +  +   +   
Sbjct: 185 SAMIYPISVLTVAFLVTVVLMIFVVPAFKGVFASFGATLPAPTLVVMGISDFFVKWW 241


>gi|238020907|ref|ZP_04601333.1| hypothetical protein GCWU000324_00804 [Kingella oralis ATCC 51147]
 gi|237867887|gb|EEP68893.1| hypothetical protein GCWU000324_00804 [Kingella oralis ATCC 51147]
          Length = 427

 Score = 79.8 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 58/165 (35%), Gaps = 7/165 (4%)

Query: 1   MKHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIET 58
           +  + K+R  K    D       +   ++AGLP+  A  ++    S+  + +    V  +
Sbjct: 73  LTKMKKQRQKKITSADIAVFTRQLSTMMKAGLPLMQAFDIVAKGHSNAAMTNLLLDVKNS 132

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G SL+ S S+  +         F   +    + GG L   L  L+  +   + +K K
Sbjct: 133 VEQGNSLASSFSQHPK-----YFDKFYCNLVAAGEAGGVLEGLLDKLATYMEKTQAIKKK 187

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
           V++      A   +   L   +   V  +       L  +  G  
Sbjct: 188 VKSALTYPIAVIVVAIVLILVMMMFVLPSFKKIYEGLGAELPGLT 232


>gi|167579124|ref|ZP_02371998.1| type II secretion system protein [Burkholderia thailandensis TXDOH]
          Length = 319

 Score = 79.8 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 68/165 (41%), Gaps = 4/165 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   I  R    ++DFP+ALD++   V AGL +  A+  +  +    S  V  E   ++ 
Sbjct: 154 LARRIASRQRMIIEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLL 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +      ++V  FS ++    + G ++  +L  LS  LR ++ M+A
Sbjct: 214 EMRSGFTKEAALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 273

Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           + +A  +        I    P  ++ L+          L+    G
Sbjct: 274 EERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRTLLPTMAG 318


>gi|154250529|ref|YP_001411353.1| type II secretion system protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154154479|gb|ABS61696.1| type II secretion system protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 291

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 86/184 (46%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +  +KR     D      D + + +  G  +S A+A     S   V   F   I    
Sbjct: 105 IDYRARKRMNALSDAMLGYFDRVRQLLVVGNSLSVALARATQSSPPIVIEFFSPTIRRIA 164

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  ++ES++++     L E+  F T I    + GG+L+  L+NL   +R R  +  +V+
Sbjct: 165 NGAGVAESVNQLADETDLYELRLFGTAIETNLRFGGSLTSILSNLIDNIRRRAAVMREVR 224

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             + + +ASAW++G LP  V+++V   S  YM   I +P G  LL   A   + G  +MR
Sbjct: 225 GSTSQIRASAWVLGLLPMIVASVVMVQSTDYMRWFIEEPAGRKLLIYCALSQIFGAFMMR 284

Query: 181 LMIN 184
            ++ 
Sbjct: 285 NVVR 288


>gi|325291654|ref|YP_004277518.1| components of type IV pilus [Agrobacterium sp. H13-3]
 gi|325059507|gb|ADY63198.1| components of type IV pilus [Agrobacterium sp. H13-3]
          Length = 328

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 59/148 (39%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + + + KR A     +P+ALD+++  + +G+ +  A+  +  +    S  +  E      
Sbjct: 170 VSNAMNKRQASIRRAWPDALDLMLICIESGVSMEAAMRRVAEEMGEQSPELAEEMMLTTA 229

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     ++        L  V      +    + G  L++AL  L++  RD +  +A
Sbjct: 230 ELSFLQDRRIALENFGMRTQLDGVKSVVQALIQAERYGTPLAQALRVLAQEGRDERMNEA 289

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 290 EKKAAALPPKLTVPMIIFFLPVLIAVIL 317


>gi|254463054|ref|ZP_05076470.1| type II/IV secretion system protein, TadC subfamily
           [Rhodobacterales bacterium HTCC2083]
 gi|206679643|gb|EDZ44130.1| type II/IV secretion system protein, TadC subfamily
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 323

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 67/148 (45%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +   I  R  +    FP++LD+++  V AG  +  ++  +  +   S   +  E+  V +
Sbjct: 163 ITRRIDTRKEQIESGFPDSLDMMLVCVEAGQSLDQSIVRVAAELHHSYPFLADEYEIVAQ 222

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G      ++ M     +Q+V+ F TV+   +  G +++EAL   +  +RD++ M+A
Sbjct: 223 EMKAGKDKIAVLNDMSERCGVQDVASFVTVLIQSTSFGTSIAEALRVYAGEMRDKRVMRA 282

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A  +  K +   +      +  ++ 
Sbjct: 283 EEKANKLPTKMTLATMMLTVPPLLIILV 310


>gi|325132888|gb|EGC55565.1| Bacterial type II secretion system protein F domain protein
           [Neisseria meningitidis M6190]
 gi|325138873|gb|EGC61423.1| Bacterial type II secretion system protein F domain protein
           [Neisseria meningitidis ES14902]
          Length = 410

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 54/183 (29%), Gaps = 6/183 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60
           +     +     +D       +   ++AGLP+  A  ++     +  +      +     
Sbjct: 58  RVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRGEVE 117

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SLS + S   +         F   +    + GG L   L  L+      + ++ KV+
Sbjct: 118 QGSSLSRAFSNHPK-----YFDRFYCNLVAAGETGGVLESLLDKLAIYKEKTQAIRKKVK 172

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
                  +   +   L F +   V          +  +        +  +   +    M 
Sbjct: 173 TALTYPVSVIAVAIGLVFVMMIFVLPAFKEVYANMGAELPALTQTVMDMSDFFVSYGWMV 232

Query: 181 LMI 183
           L+ 
Sbjct: 233 LIA 235


>gi|261378358|ref|ZP_05982931.1| 3-isopropylmalate dehydrogenase [Neisseria cinerea ATCC 14685]
 gi|269145466|gb|EEZ71884.1| 3-isopropylmalate dehydrogenase [Neisseria cinerea ATCC 14685]
          Length = 410

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 58/177 (32%), Gaps = 6/177 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLS 66
           +     +D       +   ++AGLP+  A  ++    ++  +      +      G +LS
Sbjct: 64  KRKITQEDITVFTRQLATMMKAGLPLMQAFEIVARGHANPSMTEMLMEIRSEVEQGTTLS 123

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            + SR  +         F   +    ++GG L   L  L+      ++++ KV+      
Sbjct: 124 RAFSRYPK-----YFDRFYCNLVSAGEMGGVLESLLDKLAVYKEKTQSIRKKVKTALTYP 178

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            +   +   L F +   V        + +  +        +  +   +    + L+ 
Sbjct: 179 ISVIAVAIGLVFVMMIFVLPAFKEVYSNMGAELPALTQAVMDISEFFVAYGWIILIA 235


>gi|167617239|ref|ZP_02385870.1| type II secretion system protein [Burkholderia thailandensis Bt4]
 gi|257141112|ref|ZP_05589374.1| type II secretion system protein [Burkholderia thailandensis E264]
          Length = 319

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 68/165 (41%), Gaps = 4/165 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   I  R    ++DFP+ALD++   V AGL +  A+  +  +    S  V  E   ++ 
Sbjct: 154 LARRIASRQRMIIEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLL 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +      ++V  FS ++    + G ++  +L  LS  LR ++ M+A
Sbjct: 214 EMRSGFTKEAALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 273

Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           + +A  +        I    P  ++ L+          L+    G
Sbjct: 274 EERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRTLLPTMAG 318


>gi|190889886|ref|YP_001976428.1| pilus component protein [Rhizobium etli CIAT 652]
 gi|190695165|gb|ACE89250.1| pilus component protein [Rhizobium etli CIAT 652]
          Length = 328

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 62/148 (41%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + + + KR       +P+ALD+++  V +G+ +  A+  +  +    S P+  E      
Sbjct: 170 ISNRMGKRQHSIKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPPLAEEMVLTTA 229

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     ++  +     ++ V   +  +    + G  +++AL  L++  RD +  +A
Sbjct: 230 ELSFLPDRRVALENLATRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEA 289

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 290 EKKAAALPPKLTVPMILFFLPVLIAVIL 317


>gi|300702980|ref|YP_003744582.1| type IV pilus assembly transmembrane protein [Ralstonia
           solanacearum CFBP2957]
 gi|299070643|emb|CBJ41938.1| type IV pilus assembly transmembrane protein [Ralstonia
           solanacearum CFBP2957]
          Length = 421

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 55/180 (30%), Gaps = 7/180 (3%)

Query: 2   KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ 59
           K     R  K    D       +   ++AG+P+  +V +I    ++         +    
Sbjct: 69  KRRRAARGKKITPKDVAYFTRQLSTMLKAGVPLLQSVDIIARGHANPNFTQLLTEIRVDI 128

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G S++++  R  +             +    + GG L   L  LS  +     +KA++
Sbjct: 129 ESGSSMAQAFRRHPK-----YFDSLYCNLIDAGEQGGILDALLERLSMYMEKSIALKAQI 183

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           ++  +   +   +   +   +   V                   L+ +  +   +    +
Sbjct: 184 KSAMIYPISVLTVAFLVTVVLMIFVVPAFKNVFASFGATLPAPTLVVMNISDFFVKWWYI 243


>gi|119962497|ref|YP_948623.1| type II secretion system protein F [Arthrobacter aurescens TC1]
 gi|119949356|gb|ABM08267.1| putative bacterial type II secretion system protein F domain
           [Arthrobacter aurescens TC1]
          Length = 296

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 65/154 (42%), Gaps = 2/154 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
              +R      + PN LD ++ SV AGL    A+A      S P+  E  R ++    G 
Sbjct: 140 RAAERQKAIQTELPNTLDQMLISVEAGLGFEGAMARAGQNGSGPLAMEMLRTLQDMQAGR 199

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S  E+   +   + + ++  F   I      G  ++  L   ++ +R ++  +A+ QA+ 
Sbjct: 200 SRKEAYVALAERVDVHDLRAFVGAIVQADTYGIAIANVLRTQAKQMRIKRRQRAEEQAMK 259

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           +  K    ++  +   +  ++    P  +NV+ N
Sbjct: 260 LPVKVLFPLMFCILPVLFIVI--MGPAVLNVMTN 291


>gi|297182320|gb|ADI18488.1| type II secretory pathway, component pulf [uncultured
           Verrucomicrobiales bacterium HF4000_13K17]
          Length = 417

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 66/186 (35%), Gaps = 12/186 (6%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQH 60
           +   ++R    L D  N    +   ++AG+P++ A+  +    S    +S   +++    
Sbjct: 65  RRFGQRRKKPKLQDLANFTRQLANLLKAGMPLTGALNSMTSLDSEGIPKSVCAQLLADVR 124

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +LS S+ +     P          +    +  G++ E L  L+        ++ K+ 
Sbjct: 125 EGRTLSMSMGKFPEIFPD-----MYLNMVKAGESSGSMVEVLKRLADHYERFAEVRQKII 179

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGIM 177
           +  +      +++G     +   + +  P +M +         L   +    +       
Sbjct: 180 SALVYPM---FVMGLGFLLIFVFMSYILPKFMTIFKGMKVQLPLSTRILEGMSGFFENWW 236

Query: 178 VMRLMI 183
            + L++
Sbjct: 237 WLVLIM 242


>gi|15676248|ref|NP_273382.1| pilus assembly protein PilG [Neisseria meningitidis MC58]
 gi|121635531|ref|YP_975776.1| pilus-assembly protein [Neisseria meningitidis FAM18]
 gi|161870737|ref|YP_001599910.1| type IV pilus assembly protein [Neisseria meningitidis 053442]
 gi|218768891|ref|YP_002343403.1| pilus-assembly protein [Neisseria meningitidis Z2491]
 gi|254805632|ref|YP_003083853.1| type IV pilus assembly protein [Neisseria meningitidis alpha14]
 gi|7225553|gb|AAF40776.1| pilus assembly protein PilG [Neisseria meningitidis MC58]
 gi|120867237|emb|CAM11006.1| pilus-assembly protein [Neisseria meningitidis FAM18]
 gi|121052899|emb|CAM09251.1| pilus-assembly protein [Neisseria meningitidis Z2491]
 gi|161596290|gb|ABX73950.1| type IV pilus assembly protein [Neisseria meningitidis 053442]
 gi|254669174|emb|CBA07900.1| type IV pilus assembly protein [Neisseria meningitidis alpha14]
 gi|254670164|emb|CBA05222.1| pilus assembly protein PilC [Neisseria meningitidis alpha153]
 gi|254672314|emb|CBA05441.1| pilus assembly protein PilC [Neisseria meningitidis alpha275]
 gi|261391858|emb|CAX49317.1| type IV pilus biogenesis protein PilG [Neisseria meningitidis 8013]
 gi|308388541|gb|ADO30861.1| pilus-assembly protein [Neisseria meningitidis alpha710]
 gi|316984335|gb|EFV63309.1| pilin biogenesis protein [Neisseria meningitidis H44/76]
 gi|319411192|emb|CBY91597.1| type IV pilus biogenesis protein PilG [Neisseria meningitidis WUE
           2594]
 gi|325128919|gb|EGC51773.1| Bacterial type II secretion system protein F domain protein
           [Neisseria meningitidis N1568]
 gi|325134914|gb|EGC57546.1| Bacterial type II secretion system protein F domain protein
           [Neisseria meningitidis M13399]
 gi|325136908|gb|EGC59505.1| Bacterial type II secretion system protein F domain protein
           [Neisseria meningitidis M0579]
 gi|325140982|gb|EGC63488.1| Bacterial type II secretion system protein F domain protein
           [Neisseria meningitidis CU385]
 gi|325145128|gb|EGC67410.1| Bacterial type II secretion system protein F domain protein
           [Neisseria meningitidis M01-240013]
 gi|325199527|gb|ADY94982.1| Bacterial type II secretion system protein F domain protein
           [Neisseria meningitidis H44/76]
 gi|325202847|gb|ADY98301.1| Bacterial type II secretion system protein F domain protein
           [Neisseria meningitidis M01-240149]
 gi|325208840|gb|ADZ04292.1| Bacterial type II secretion system protein F domain protein
           [Neisseria meningitidis NZ-05/33]
          Length = 410

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 54/183 (29%), Gaps = 6/183 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60
           +     +     +D       +   ++AGLP+  A  ++     +  +      +     
Sbjct: 58  RVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRGEVE 117

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SLS + S   +         F   +    + GG L   L  L+      + ++ KV+
Sbjct: 118 QGSSLSRAFSNHPK-----YFDRFYCNLVAAGETGGVLESLLDKLAIYKEKTQAIRKKVK 172

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
                  +   +   L F +   V          +  +        +  +   +    M 
Sbjct: 173 TALTYPVSVIAVAIGLVFVMMIFVLPAFKEVYANMGAELPALTQTVMDMSDFFVSYGWMV 232

Query: 181 LMI 183
           L+ 
Sbjct: 233 LIA 235


>gi|17547545|ref|NP_520947.1| fimbrial assembly transmembrane protein [Ralstonia solanacearum
           GMI1000]
 gi|17429849|emb|CAD16533.1| probable fimbrial assembly transmembrane protein [Ralstonia
           solanacearum GMI1000]
          Length = 421

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/185 (10%), Positives = 56/185 (30%), Gaps = 6/185 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60
           +    +       D       +   ++AG+P+  +V +I    ++         +     
Sbjct: 70  RRRAARGKKIVPKDIAYFTRQLSTMLKAGVPLLQSVDIIARGHANPNFTQLLTEIRVDIE 129

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S++++  R  ++            +    + GG L   L  LS  +     +KA+++
Sbjct: 130 SGSSMAQAFRRHPQH-----FDSLYCNLIDAGEQGGILDALLERLSMYMEKSIALKAQIK 184

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           +  +   +   +   +   +   V                   L+ +  +   +    + 
Sbjct: 185 SAMIYPISVLTVAFLVTVVLMIFVVPAFKNVFASFGATLPAPTLVVMGISDFFVKWWYII 244

Query: 181 LMINF 185
           +    
Sbjct: 245 IFTPI 249


>gi|225181994|ref|ZP_03735426.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
 gi|225167279|gb|EEG76098.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
          Length = 305

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 75/155 (48%), Gaps = 2/155 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++  + R A     FP+ LD++  SV AGL    A+A +V +S  PV  EFRRV++   
Sbjct: 148 LENTARSRKASIEKSFPDTLDLLTVSVGAGLGFDGALAKVVEKSEGPVAEEFRRVLQEIK 207

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G +  E++        + +V  F+  I    QLG N+ + L   S  +R ++  + + Q
Sbjct: 208 MGKARREALRDFGERTGIDDVKSFTGAIVQADQLGLNIGKTLKVQSEQMRRKRRQRVEEQ 267

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           A+ +  K    ++  +   +  ++    P  + ++
Sbjct: 268 AMKVPVKMLLPLVAFIFPTIFIVL--LGPAMIQIV 300


>gi|296284556|ref|ZP_06862554.1| hypothetical protein CbatJ_13056 [Citromicrobium bathyomarinum
           JL354]
          Length = 342

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 60/148 (40%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + +  KKRT       P+ALD++V    AGL +  A   +  +   +   +  EF     
Sbjct: 182 IANKAKKRTDAIRKGLPDALDLLVICAEAGLTIDSAFTRVAKELGRAYPELGDEFLLTSI 241

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                 +   +   +   + L+ V    T +    + G  L+ AL  LS   R+ + M+A
Sbjct: 242 ELSFLNNRKMAFDNLAYRVDLEAVQGVVTTMIQTERYGTPLASALRVLSAEFRNERMMRA 301

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A  + A  +  +I  +   +  ++ 
Sbjct: 302 EEKAARLPAIMTVPLILFILPTLFIVIL 329


>gi|325981148|ref|YP_004293550.1| Type II secretion system F domain [Nitrosomonas sp. AL212]
 gi|325530667|gb|ADZ25388.1| Type II secretion system F domain [Nitrosomonas sp. AL212]
          Length = 407

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/170 (10%), Positives = 48/170 (28%), Gaps = 6/170 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSES 68
                D       +   +++G+P+  A  +I    S+  +      +      G +L+++
Sbjct: 63  RIIEKDITLFTRQLATMMKSGVPLLQAFDIIGKGHSNRALSKLLMDIKADVETGSNLTDA 122

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
             +                +    +  G L   L  L+      + +K K+++      +
Sbjct: 123 FRKYPL-----YFDALYCNLVGAGEAAGILDTILDRLATYKEKIQAIKGKIKSALFYPIS 177

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
              +   +   +   V             D     L  +A +   +    
Sbjct: 178 IIVVAFVITAIIMIFVIPAFKDLFEGFGADLPAPTLFVMAISDFFVAYWW 227


>gi|269955832|ref|YP_003325621.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304513|gb|ACZ30063.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
           15894]
          Length = 285

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 66/173 (38%), Gaps = 3/173 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           + +P  +D +   VRAGL + +AV  +  +    +R  F R           +ES+  + 
Sbjct: 107 EVWPEVVDHLASGVRAGLSLPEAVGQLGERGPVELREPFARFAADYRATGRFTESLDLLK 166

Query: 74  RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + +  +  G +L   L  LS  LR+    + +++A      + A +
Sbjct: 167 ARLADPVADRIIEALRLTREVGGSDLGRLLRTLSTFLREDARTRGELEARQSWTVSGARL 226

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             + P+ V   +  T P       +   G ++L   AA  ++   +M  +   
Sbjct: 227 AAAGPWVVLAFL-ATRPE-TARAYDSAAGVLVLAGGAACSVVAYRLMVKIGRL 277


>gi|134095952|ref|YP_001101027.1| type 4 fimbrial assembly protein [Herminiimonas arsenicoxydans]
 gi|133739855|emb|CAL62906.1| type 4 fimbrial assembly protein [Herminiimonas arsenicoxydans]
          Length = 410

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/170 (11%), Positives = 50/170 (29%), Gaps = 6/170 (3%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSE 67
                 D       +   ++AG+P+  +  ++     +  V    + +      G SL++
Sbjct: 66  KKVSEKDITLFTRQLATMMKAGVPLLQSFDIVAKGNDNPSVSKLIQDIRADVETGTSLNQ 125

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +  +                +    +  G L + L  L+        +KAK+++      
Sbjct: 126 AFRKFPL-----YFDPLFCNLVGAGEQAGILEDLLTRLAIYKEKTLAIKAKIKSALFYPI 180

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           A   +   +   +   V             D     L+ +A +   +   
Sbjct: 181 AILAVAFIVTAVIMIWVVPAFKEVFKSFGADLPAPTLMVMAISDFFVAYW 230


>gi|241207162|ref|YP_002978258.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861052|gb|ACS58719.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 328

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 61/148 (41%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + + + KR       +P+ALD+++  V +G+ +  A+  +  +    S  +  E      
Sbjct: 170 ISNRMGKRQHSIKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPALAEEMVLTTA 229

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     ++  +     ++ V   +  +    + G  +++AL  L++  RD +  +A
Sbjct: 230 ELSFLPDRRAALENLATRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEA 289

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 290 EKKAAALPPKLTVPMILFFLPVLIAVIL 317


>gi|72160531|ref|YP_288188.1| integral membrane protein [Thermobifida fusca YX]
 gi|71914263|gb|AAZ54165.1| putative integral membrane protein [Thermobifida fusca YX]
          Length = 250

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 56/180 (31%), Gaps = 4/180 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L ++R    L    +    I   +R G     A+A  +  +   + +E          G 
Sbjct: 66  LARRR----LRGCADVCRAIAAELRCGSSPGKALAAALRGADPLIAAELAEAAVLAEAGH 121

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
               ++    R       +  +    V +  G  ++  +  L+  L  +  +  ++    
Sbjct: 122 DPVPALRAASRRPGGTAWASLAVCWQVAASSGTGVAAVVERLADALAHQDALHRELDIHL 181

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
              + +A ++  LP     +        +  L   P G   L    A    G+   R ++
Sbjct: 182 AGPRTTAVLLAGLPIAGLLMASALGGAPLLFLFTTPLGWGCLCAGIALNAAGVWWTRRLV 241


>gi|304314056|ref|YP_003849203.1| hypothetical protein MTBMA_c02820 [Methanothermobacter marburgensis
           str. Marburg]
 gi|302587515|gb|ADL57890.1| putative membrane protein [Methanothermobacter marburgensis str.
           Marburg]
          Length = 359

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 74/178 (41%), Gaps = 2/178 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR+++   + P AL  +   +++GL + D++  +       +  EF R +E    G +  
Sbjct: 178 KRSSEASRELPFALRQMATELKSGLGLHDSMRSVAMSGYGALSEEFARTLEEIKYGETTE 237

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++  M   +    +      I+     GG+LS+ L  ++  +     MK K  +  + +
Sbjct: 238 SALIEMSNRIESDGLKRAVYQITRTLNSGGDLSKTLNVIADDIAYEMRMKLKDYSQKLNS 297

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI--MVMRLM 182
               ++  ++   V  LV   +   +   +  P   +L+ +    ML+G    +++ +
Sbjct: 298 FTMIYMFLAILGPVIFLVMLLAASTVMGSVLPPIAIILIYLFLFPMLVGFMAFMIKRL 355


>gi|258405283|ref|YP_003198025.1| Type II secretion system F domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257797510|gb|ACV68447.1| Type II secretion system F domain protein [Desulfohalobium
           retbaense DSM 5692]
          Length = 320

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 67/148 (45%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + +  +KR    L  FP+ALD++V  V AG+ +  A++ +  +S   +  +  E      
Sbjct: 159 LTNKRQKRRQTILKGFPDALDLMVVCVEAGMGLDAAISRVAKESKSNNATLSEELHFFTL 218

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+   +++  +     LQ++   +T++    + G ++S+AL   S  +R  +  +A
Sbjct: 219 ETRAGMPRKDALKNLAMRTDLQQMQNLTTLLIQTEKFGTSVSQALKVFSESMRTERFQRA 278

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A  +  K    +I  +   +   + 
Sbjct: 279 EEKAAKIPVKLLFPLIMFIFPSLFVAIL 306


>gi|15887568|ref|NP_353249.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
 gi|15155105|gb|AAK86034.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
          Length = 328

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 59/148 (39%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + + + KR A     +P+ALD+++  + +G+ +  A+  +  +    S  +  E      
Sbjct: 170 VSNRMTKRQASIKRAWPDALDLMLICIESGVSMESAMRRVAEEMGEQSPELAEEMILTTA 229

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     ++        L  V      +    + G  L++AL  L++  RD +  +A
Sbjct: 230 ELSFLQDRRTALENFGMRTQLDGVKSVVQALIQAERYGTPLAQALRVLAQEGRDERMNEA 289

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 290 EKKAAALPPKLTVPMIIFFLPVLIAVIL 317


>gi|312139259|ref|YP_004006595.1| type ii secretion system integral membrane subunit [Rhodococcus
           equi 103S]
 gi|311888598|emb|CBH47910.1| putative type II secretion system integral membrane subunit
           [Rhodococcus equi 103S]
          Length = 296

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 58/158 (36%), Gaps = 1/158 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   ++R A       + LD +  +V AGL    A+         P+  EF R ++   
Sbjct: 138 LQSRGQERQAAIELALADTLDQMTIAVEAGLGFEAAMQRAAKNGKGPLAEEFIRTLQDIQ 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S   +   +        +  F   +    + G  ++E L   +  +R ++   A+ +
Sbjct: 198 MGQSRRIAYLDLAARTKAPNLRRFLRAVIQADEYGVAIAEVLRTQASEMRLKRRQSAEEK 257

Query: 121 ALSMEAKA-SAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           A+ +  K     +   LP     ++       M VL  
Sbjct: 258 AMKVPVKVLFPLMTCILPTIFIVILGPAVINMMEVLGG 295


>gi|328953758|ref|YP_004371092.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
           DSM 11109]
 gi|328454082|gb|AEB09911.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
           DSM 11109]
          Length = 302

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 63/148 (42%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + H I  R  K  +  P+ALD++V  V AGL ++ A+  +       +  +  EF  +  
Sbjct: 141 LNHKISARQKKISEGLPDALDLLVVCVEAGLGLNAAMKRVADDLKMNNPVLSLEFNMLNL 200

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL   +++  +     ++E+S    ++    + G ++++AL   S  +R  +  + 
Sbjct: 201 EILAGLDREQALRNLAERTGVEELSTLCAILIQADRFGTSIAQALRVQSDTMRTNRRQRL 260

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           +  A     K    +I  +   +  ++ 
Sbjct: 261 EELAARTPVKLVFPLILFIFPALVVVIL 288


>gi|154250694|ref|YP_001411518.1| type II secretion system protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154154644|gb|ABS61861.1| type II secretion system protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 322

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 62/160 (38%), Gaps = 5/160 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           ++++I +R       FP+ALD+++  V +G+ +  A   +  +       +  E      
Sbjct: 164 VENVISRRQDSIRKAFPDALDLMLICVESGMSIEAAFQKVAAEIGAQSVELAEELGLTTA 223

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   + R   L  V   +T +    + G  L +AL  +++  RD +  +A
Sbjct: 224 ELSYLQERRMAYENLARRTGLPGVKAVATTLIQAERYGTPLGQALRVMAQENRDMRMAEA 283

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + +A  +  K +  +I      +  ++    P  +    N
Sbjct: 284 EKKAAGLPPKLTVPMILFFLPVLFGVI--LGPAIIKSFAN 321


>gi|78222607|ref|YP_384354.1| type II secretion system protein [Geobacter metallireducens GS-15]
 gi|78193862|gb|ABB31629.1| type II secretion system protein [Geobacter metallireducens GS-15]
          Length = 405

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/167 (11%), Positives = 49/167 (29%), Gaps = 4/167 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             D           + +GLP+   + ++  Q  +    E    ++    G S        
Sbjct: 64  TKDLVIFTRQFATMIDSGLPLVQCLDILSSQQENATFKEVLIKVKETVEGGS----TFAD 119

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 +        +    ++GG L   L  L+  +     +K +++   +       I
Sbjct: 120 ALSKHPKVFDQLFVNLVAAGEVGGILDTILNRLAAYIEKAMKLKKQIKGAMVYPATIMTI 179

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
              +   +   V  T          +  G     +A +  ++  +++
Sbjct: 180 AIGVVAVILIFVIPTFAKMFADFGGELPGATKFVIALSNFVVKYILL 226



 Score = 39.7 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/130 (10%), Positives = 39/130 (30%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+P+ D + ++   + + V  E         +  S++E  +        
Sbjct: 273 FTRTLGTLISSGVPIMDGLEIVAKTAGNKVVEEAV-----YKVRSSIAEGKTMAEPLQEC 327

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G +   L+ ++    D  +         ME     ++  ++  
Sbjct: 328 GVFPPMVVQMISVGEATGAMDAMLSKIADFYDDEVDDAVSALTALMEPMLMVFLGTTVGG 387

Query: 139 CVSTLVYFTS 148
            V  +     
Sbjct: 388 LVIAMYLPIF 397


>gi|331007278|ref|ZP_08330481.1| Type IV fimbrial assembly protein PilC [gamma proteobacterium
           IMCC1989]
 gi|330418927|gb|EGG93390.1| Type IV fimbrial assembly protein PilC [gamma proteobacterium
           IMCC1989]
          Length = 404

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 48/165 (29%), Gaps = 4/165 (2%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           D       +   V+AG+P+  +  ++   S +P   E    I T     +   +  +   
Sbjct: 66  DIATFTRQLATMVKAGVPLVQSFDIVADGSDNPNMKELILSIRTDVASGTSFAATLK--- 122

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
               +        +    +  G L   L  L+      + +KAK++       A   I  
Sbjct: 123 -KHPKYFDELFCNLIAAGEQSGALETLLDRLAVYKEKTEILKAKIKKALTYPIAIVLISL 181

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            +   +   V        +    D     LL +  +        +
Sbjct: 182 VVTGILLIKVVPQFESTFSSFGADLPAFTLLVLNLSEFTQEYWWI 226



 Score = 35.9 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 38/133 (28%), Gaps = 5/133 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                  +  +  AG+P+ +A+  + G + + +  E    I  +        S  R    
Sbjct: 271 LARYARTLATTFAAGVPLINALESVAGSTGNIIYEEGVLSIRDEVATGIQLNSSMRASGL 330

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          ++   +  G L E L   +    D  +      A  +E      +   
Sbjct: 331 FP-----SMMLQLTAIGEESGALDEMLEKAATYHEDIVDNTVDNLASLIEPLIMVVLGVL 385

Query: 136 LPFCVSTLVYFTS 148
           +   +  +     
Sbjct: 386 VGGLLIAMYLPIF 398


>gi|317129793|ref|YP_004096075.1| type II secretion system F domain [Bacillus cellulosilyticus DSM
           2522]
 gi|315474741|gb|ADU31344.1| Type II secretion system F domain [Bacillus cellulosilyticus DSM
           2522]
          Length = 401

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 65/183 (35%), Gaps = 21/183 (11%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           DF   L      +++G+ + DA  ++  Q+S  P+      V E    G+S SE+  +  
Sbjct: 64  DFVLFLRQFATLLKSGVSIVDATNILSKQTSSKPLMRALENVEEELLSGMSFSEAAEKQK 123

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
              P          +    +  G+L EAL  L+     + + K KV++        A + 
Sbjct: 124 NIFPP-----IFVNMVRAGEATGSLDEALEQLAVQFEKQHDTKQKVKSALAYPIIIAIVA 178

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG---------------HMLLGVAAAFMLIGIMV 178
             +   + T V       ++ L  +                    L+ +A   + + I +
Sbjct: 179 TVVVIFLLTSVVPMFASMLSDLGGELPAITVFVLTVSNIVSTLWWLILIAVILLAVAIWI 238

Query: 179 MRL 181
           MR 
Sbjct: 239 MRK 241


>gi|146338118|ref|YP_001203166.1| putative pilus assembly protein membrane protein [Bradyrhizobium
           sp. ORS278]
 gi|146190924|emb|CAL74929.1| putative pilus assembly protein; putative membrane protein
           [Bradyrhizobium sp. ORS278]
          Length = 324

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 59/148 (39%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           + + I KR       FP+ALD+++  + +G+ +  A   +  + S     +  EF     
Sbjct: 166 LSNAISKRQLSIRRAFPDALDLLLICIESGMSIEAAFRRVAIEISSQSIALSEEFTLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   + R   L+ V      +    + G  L ++L  +++  RD +  +A
Sbjct: 226 ELSYLQDRKVAYENLARRTGLEGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEA 285

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 286 EKKAAALPPKLTVPMILFFLPVLFVVIL 313


>gi|163846103|ref|YP_001634147.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl]
 gi|222523838|ref|YP_002568308.1| type II secretion system protein [Chloroflexus sp. Y-400-fl]
 gi|163667392|gb|ABY33758.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl]
 gi|222447717|gb|ACM51983.1| type II secretion system protein [Chloroflexus sp. Y-400-fl]
          Length = 311

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 1/163 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   IK+R    L   P+ALD++  SV AGL    A+  +  +  + +  EF+RV++   
Sbjct: 147 LDRKIKERKKNILKALPDALDLLCISVEAGLAFDLALQRVAQKWDNELSREFQRVLQDIR 206

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +  E++  +V    +++V  F + +    QLG ++S+ L   S  LR R+  +A+  
Sbjct: 207 LGRTRREALRDLVTRTGVEDVQTFVSAVIQADQLGVSMSKILRIQSDQLRVRRRQRAEEA 266

Query: 121 ALSMEAKA-SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162
           A     K     +    P     ++    P  M  L     G 
Sbjct: 267 AQKAPVKMLIPMVFLIFPALFVVILGPAVPRIMQALGVMNSGM 309


>gi|88704112|ref|ZP_01101827.1| general secretory pathway protein F [Congregibacter litoralis KT71]
 gi|88701939|gb|EAQ99043.1| general secretory pathway protein F [Congregibacter litoralis KT71]
          Length = 405

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 56/182 (30%), Gaps = 7/182 (3%)

Query: 4   LIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHL 61
           L   R       D       +   ++AG+P+  +  ++     +P   E    +      
Sbjct: 55  LFSARKKPIKPADIAIFTRQMATMMKAGVPLVQSFDIVGDGLENPSMKELVGGIKNDVSA 114

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L+ S+S+  R+            +    +  G L   L  ++      + +KAK++ 
Sbjct: 115 GGGLALSLSKHPRH-----FDELFCSLVGAGESAGTLETMLDRVATYKEKTEQLKAKIKK 169

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
                 A   +   +   +   V        +    D     L+ +  +  +     + +
Sbjct: 170 ALTYPTAVIVVALVVSGILLVKVVPQFAETFSSFGADLPAFTLMVLGLSDFMQAWWFIIV 229

Query: 182 MI 183
           + 
Sbjct: 230 IA 231



 Score = 37.0 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 38/130 (29%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +  +  AG+P+ DA+    G + + V S     I       S   +  +     P 
Sbjct: 275 FSRTLATTFNAGVPLVDALESTAGAAGNAVYSAAILQIRDDVTTGSTLYNSVKSTGLFPN 334

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G L E L  ++    +  +      +  ME    + +   +  
Sbjct: 335 -----MLLQMISIGEESGQLDEMLDKVATHYEEAVDNAVDSLSSLMEPMIMSVLGVLVGG 389

Query: 139 CVSTLVYFTS 148
            +  +     
Sbjct: 390 LMIAMYLPIF 399


>gi|90419769|ref|ZP_01227678.1| putative Flp pilus assembly protein TadC, type II/IV secretion
           system [Aurantimonas manganoxydans SI85-9A1]
 gi|90335810|gb|EAS49558.1| putative Flp pilus assembly protein TadC, type II/IV secretion
           system [Aurantimonas manganoxydans SI85-9A1]
          Length = 332

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 61/158 (38%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +K+   KR       +P+ALD+++  V +G  +  A   +  +    S P+  E   V  
Sbjct: 174 VKNRATKRRLSISRAWPDALDLLLICVESGNSIEAAFRRVAEEIGIQSIPLAEELVLVCA 233

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +     L  V    T +    + G  L  AL  LS+  RD++   A
Sbjct: 234 ELSYLPDRKVAYDNLATRTGLDGVRTVCTALVQAERYGTPLGTALRTLSQENRDQRMNLA 293

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A ++  K +  +I      +  ++    P  + V+
Sbjct: 294 EKKAAALPPKLTVPMIVFFLPVLFAVI--IGPAIIKVM 329


>gi|288559927|ref|YP_003423413.1| type II secretion system protein F GspF2 [Methanobrevibacter
           ruminantium M1]
 gi|288542637|gb|ADC46521.1| type II secretion system protein F GspF2 [Methanobrevibacter
           ruminantium M1]
          Length = 309

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 76/183 (41%), Gaps = 6/183 (3%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R  +  +  P+ L  +   +R G+ + +A+  +    + P+  E RRV+    +G S 
Sbjct: 92  ERRREELENSIPDFLRQLASMLRVGMSLENALVDLSEHGNGPLYDELRRVVVEIRMGKSF 151

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ES   M + +  +++     +I    + GG L++ ++++S  LR    +K + ++  M 
Sbjct: 152 DESFRNMAKRLDSKDLERSFKIILNAHKSGGGLADVISDVSDDLRAMLILKRERKSSVMM 211

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP------RGHMLLGVAAAFMLIGIMVM 179
           +     +   +    +  +      +M  L              L+ +    +L G ++ 
Sbjct: 212 SIMFLVLASVVAAPFALGMVGVYSSFMIELNRSSAICQLAPTVALIYLIIHSILAGFLIA 271

Query: 180 RLM 182
            +M
Sbjct: 272 LIM 274


>gi|83943934|ref|ZP_00956391.1| type II/IV secretion system protein, TadC subfamily protein
           [Sulfitobacter sp. EE-36]
 gi|83954507|ref|ZP_00963218.1| type II/IV secretion system protein, TadC subfamily protein
           [Sulfitobacter sp. NAS-14.1]
 gi|83840791|gb|EAP79962.1| type II/IV secretion system protein, TadC subfamily protein
           [Sulfitobacter sp. NAS-14.1]
 gi|83845181|gb|EAP83061.1| type II/IV secretion system protein, TadC subfamily protein
           [Sulfitobacter sp. EE-36]
          Length = 305

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 65/149 (43%), Gaps = 3/149 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +   + +R  +    FP+ALD+++  V AG  +   +  +  +   S   +  EF  V  
Sbjct: 146 VTRRVAERKEEITRGFPDALDMMLVCVEAGQSLDQCIVRVARELRASYPALAEEFEIVAY 205

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G      ++ M     +Q+VS F TV+   +  G ++++AL   +  +RD++ M+A
Sbjct: 206 EMKAGKDKVSVLNAMGERCGVQDVSSFVTVLVQSAAFGTSIADALRVYAAEMRDKRVMRA 265

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF 146
           +  A  +  K +   +      +  ++  
Sbjct: 266 EEAANKLPTKMTLATMMLTVPPLLIILVA 294


>gi|307265041|ref|ZP_07546602.1| Type II secretion system F domain protein [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306920026|gb|EFN50239.1| Type II secretion system F domain protein [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 301

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 80/183 (43%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L ++R  K  + F + + ++   ++     + A      ++  P++    RV+    
Sbjct: 115 LDYLGRRRVRKIEEQFKDFVKMLGAYLKMVPSFAGAFIKAAEEAESPLKEHTDRVVRKFE 174

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  +  ++  + + +    +  ++  I    ++  +LS      ++ L +R  M  K+ 
Sbjct: 175 LGEDIETALQEL-KNVESTYIKAWADSIIFAVRMKSDLSRVCERTAKKLYERIKMSNKIA 233

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVM 179
           A++++AK+    +  +   +  +   +SP ++    + P G +++  AA    I    V+
Sbjct: 234 AMTVQAKSLMVSLAGVMAVMIAVTMMSSPDFVKA-YSTPAGRIVIAYAALSYFISTFYVL 292

Query: 180 RLM 182
           + +
Sbjct: 293 KKI 295


>gi|325143047|gb|EGC65398.1| Bacterial type II secretion system protein F domain protein
           [Neisseria meningitidis 961-5945]
          Length = 402

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 54/183 (29%), Gaps = 6/183 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60
           +     +     +D       +   ++AGLP+  A  ++     +  +      +     
Sbjct: 50  RVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRGEVE 109

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SLS + S   +         F   +    + GG L   L  L+      + ++ KV+
Sbjct: 110 QGSSLSRAFSNHPK-----YFDRFYCNLVAAGETGGVLESLLDKLAIYKEKTQAIRKKVK 164

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
                  +   +   L F +   V          +  +        +  +   +    M 
Sbjct: 165 TALTYPVSVIAVAIGLVFVMMIFVLPAFKEVYANMGAELPALTQTVMDMSDFFVSYGWMV 224

Query: 181 LMI 183
           L+ 
Sbjct: 225 LIA 227


>gi|294055120|ref|YP_003548778.1| Type II secretion system F domain protein [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614453|gb|ADE54608.1| Type II secretion system F domain protein [Coraliomargarita
           akajimensis DSM 45221]
          Length = 383

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 58/190 (30%), Gaps = 18/190 (9%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSL 65
           KR    L         +   + AGLP+  A+     Q+ +PV S   R V      G S 
Sbjct: 37  KRKKIKLAQLTVFTQQLAAMLEAGLPLVSALEAQEEQTENPVFSIIVRNVRNEVSAGRSF 96

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S++ S      P          +    +  GNL+E L   S    D   +  +V+     
Sbjct: 97  SDACSDYPNAFPN-----LFISMVEAGEASGNLAEILDKTSVYFEDMVKLVRQVKGALTY 151

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND---PRGHML---------LGVAAAFML 173
             A   +   L   +   V             D   P   ++         +        
Sbjct: 152 PVAVIGLAVILVNVLLVAVIPVFAEMFTSFGQDLPKPTQMLIDLSAFLKSYIIYIIIATG 211

Query: 174 IGIMVMRLMI 183
           +GI ++R  I
Sbjct: 212 VGIWLLRKFI 221



 Score = 38.6 bits (88), Expect = 0.44,   Method: Composition-based stats.
 Identities = 12/134 (8%), Positives = 36/134 (26%), Gaps = 5/134 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           +           +R+G+P+   + ++   S++       +      +   +S+       
Sbjct: 248 NLSRFCRTYAILMRSGVPILRTLEIVASASNNVFIEASCK-----DISRHISQGGQVSEI 302

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                        +S   +  GN+   L  ++        +        ME     ++  
Sbjct: 303 IANDPYFPPMVKHMSKAGEQTGNVDGMLVKVAAFYDAEVEVLVAALTSLMEPLLICFLGV 362

Query: 135 SLPFCVSTLVYFTS 148
            +   V  +     
Sbjct: 363 VIGGIVMAMFLPIF 376


>gi|325109819|ref|YP_004270887.1| type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324970087|gb|ADY60865.1| Type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 333

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 65/147 (44%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +   +++R A F+   P+  D++V  + +GL +  ++  +  +   +   + +E  RV  
Sbjct: 158 LDRAVRRRQATFMKAIPDLFDLLVTCLSSGLTIEASIKRVAEELRLAHPDLANELARVQN 217

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
             HLG+S+ +++        L  +   + +     Q G    EAL   + ++R ++  +A
Sbjct: 218 EIHLGISVVDALKHFAERCNLNPIRSLAMMCEQTRQYGTRAIEALRVHANMMRTQREQRA 277

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +A     K  A  +  +   V  +V
Sbjct: 278 EERARKAAVKILAPTVLLIFPSVFVVV 304


>gi|260461944|ref|ZP_05810189.1| type II secretion system protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259032191|gb|EEW33457.1| type II secretion system protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 339

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 58/148 (39%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           + +   KR       +P+ALD+++  V +G+ V  A+  +  +       +  EF     
Sbjct: 169 VNNRATKRKQSIQMAWPDALDLMLICVESGMSVEAALRKVADEIGAQSVALAEEFILTNA 228

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   +     L+ V   S  +    + G  ++ AL  L+   RD++   A
Sbjct: 229 ELSYLQERKQAYENLASRTGLESVRSVSQALVQAERYGTPVAHALRVLAAESRDQRMNAA 288

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 289 EKKAAALPPKLTVPMILFFLPVLFAIIL 316


>gi|239929198|ref|ZP_04686151.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
 gi|291437532|ref|ZP_06576922.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291340427|gb|EFE67383.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 295

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 61/144 (42%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I+ R        P+ LD++   V AGL    A+  +  +   P   E R  +    
Sbjct: 134 IWSAIRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVASKYEGPWADELRITLRQMD 193

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+S  ++ + + R    ++V+ F T +    +LG  + + L +L++ +R      A+ +
Sbjct: 194 LGMSRRQAFAELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRK 253

Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144
           A     KA+  I   +      L+
Sbjct: 254 AARAVPKATMMITTFMVPATMILL 277


>gi|139438671|ref|ZP_01772155.1| Hypothetical protein COLAER_01156 [Collinsella aerofaciens ATCC
           25986]
 gi|133775751|gb|EBA39571.1| Hypothetical protein COLAER_01156 [Collinsella aerofaciens ATCC
           25986]
          Length = 308

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 85/181 (46%), Gaps = 1/181 (0%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++      +  P A   +  S+ +G  ++  +  +   + +PV +EF RV      G+S 
Sbjct: 128 RREQHDAEEAMPEAFTALSMSLASGHSLAQGMRFVGAHAQEPVHTEFLRVAAAIDCGISA 187

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           ++++  ++  +    +S  +  + V  + G  L++ L+  S ++ +R  +K ++   + +
Sbjct: 188 TDALDDLLVRIDAPGLSLVTLALKVSQRTGAPLADLLSEASSMVGERIELKRRLDVKTSQ 247

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           A+ SA ++ ++P  +  ++   S  +   L   P G   + +  A   + ++V+R ++  
Sbjct: 248 ARMSAHMVAAMPTGMCAVLALLSADFRRGL-ATPAGAGAVVLGLALNAVALVVIRRIMRV 306

Query: 186 D 186
           +
Sbjct: 307 E 307


>gi|145219378|ref|YP_001130087.1| type II secretion system protein [Prosthecochloris vibrioformis DSM
           265]
 gi|145205542|gb|ABP36585.1| type II secretion system protein [Chlorobium phaeovibrioides DSM
           265]
          Length = 313

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 71/158 (44%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           ++ + +KR  +  D  P+ +D++V    +G+ +  A+A I  +    +  +  EF   + 
Sbjct: 153 LRFITQKRHERMRDSLPDMIDLMVICTESGMGIDSAIARISREMARGNPDLAQEFYLSVL 212

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  E++  +     L+++    T+     + G  +++AL   S +LR R+  +A
Sbjct: 213 EIRAGATRIEALRNLALRTRLKDMDDLVTMFVQAHKFGTGIAQALRVQSDMLRSRRTQRA 272

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  A  +  K +  ++  +   +  L+    P  + ++
Sbjct: 273 EEMAAKIPVKMTVPLVLFIFPTL--LMVLLGPAIIQIM 308


>gi|77359347|ref|YP_338922.1| type IV pilus biogenesis protein C [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874258|emb|CAI85479.1| type IV pilus biogenesis protein PilC [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 408

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 58/180 (32%), Gaps = 7/180 (3%)

Query: 8   RTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65
           R  K    D       I   + AG+P+  ++ +I   +++  +      + +    G  L
Sbjct: 62  RLQKITPKDIAIVTRQIATMLMAGVPLIQSIEMIGTGATNKSLGKLMETIADEVKAGQPL 121

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S+++ R  R             +    +  G L +    ++      + +K+K++     
Sbjct: 122 SQALRRHPR-----YFDDLYCDLVASGEQSGALDKIFDRVAIYKEKSEALKSKIKKAMFY 176

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             A   I   +   +   V             +     L  ++ +  +     + L+I F
Sbjct: 177 PIAVLVIALIVTSILLIFVVPQFQDIFAGFGAELPAFTLFVISISEFMQAYWWIILIIMF 236



 Score = 34.3 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 15/129 (11%), Positives = 39/129 (30%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +  +  AG+P+ DA+    G S + V       +      G  ++ ++         +
Sbjct: 280 RTLSTTFAAGVPLVDALDSAAGASGNAVYRYAILEIKAEVSSGNQMNWAMRN------SK 333

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                   +    +  G+L   L  ++ I     +      +  +E    A +   +   
Sbjct: 334 IFPDMVIQMVAIGEESGSLDGMLGKVATIYEQEVDDAVDGLSSLLEPMIMAVLGVLVGGL 393

Query: 140 VSTLVYFTS 148
           +  +     
Sbjct: 394 IIAMYLPIF 402


>gi|57641787|ref|YP_184265.1| hypothetical protein TK1852 [Thermococcus kodakarensis KOD1]
 gi|57160111|dbj|BAD86041.1| hypothetical membrane protein, conserved [Thermococcus kodakarensis
           KOD1]
          Length = 351

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 71/182 (39%), Gaps = 2/182 (1%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K + K+R  +     P AL  I   + AG+ +++A+  +      P+  EF  VI     
Sbjct: 165 KMVWKRRVREVEKALPYALRHIASLLSAGVGIAEAMLSVAKADYGPLSEEFELVIRDMRT 224

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S  E++ +    M  + VS     I    + GGNL+E L  L+        MK     
Sbjct: 225 GSSFEEAMLKFEEKMASENVSRVVKQILRAVKFGGNLAEILYKLAEDFAFEYRMKLVEYV 284

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN--VLINDPRGHMLLGVAAAFMLIGIMVM 179
             +   +  ++  ++      +V   +   M   ++ + P   ++L V    M   I+ M
Sbjct: 285 QKVNGISFVYMFMTIVMPTMLVVGILAGSLMARKLIFSVPMIAIMLVVVFPMMSFMIINM 344

Query: 180 RL 181
             
Sbjct: 345 IK 346


>gi|121534350|ref|ZP_01666174.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
 gi|121307120|gb|EAX48038.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
          Length = 308

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 69/157 (43%), Gaps = 2/157 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I  R      D P+ LD++  SV AGL    A+A +  +    +  EF R ++   
Sbjct: 150 LNRKIAMRKRSIQKDLPDVLDLLTVSVEAGLGFDGALAKLSEKMKGALVDEFTRALQEMR 209

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+   E++  M     + ++S F+T +    QLG ++ + L   S  +R+++  + +  
Sbjct: 210 MGVPRREALRAMGLRCDVPDLSLFTTSLIQADQLGVSIGQVLRVQSASMREKRRQRTQEL 269

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           A+    K    ++  +   +  +V    P  + + + 
Sbjct: 270 AMKAPVKMLLPLVFFIFPAIFVVV--LGPAIIQIFLT 304


>gi|84498181|ref|ZP_00996978.1| probable secretion system protein TadC [Janibacter sp. HTCC2649]
 gi|84381681|gb|EAP97564.1| probable secretion system protein TadC [Janibacter sp. HTCC2649]
          Length = 301

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 63/151 (41%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  +    F +ALD++   V +G     A+  +    + P+  EF RV+    +G++  
Sbjct: 149 RRQEQLRKGFADALDMLTVCVESGQGFDAALGQVARNVTGPIAGEFARVLSEFQIGMTRG 208

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++   M       EV  F + +    +LG  ++  L   ++ +R  +   A+ +A  +  
Sbjct: 209 QAFQGMAERNTSPEVKNFVSALVQADRLGVPIAGVLREQTKEMRVVRRQLAEEKAQKVTV 268

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           K    ++  +   +  ++   +   +  L +
Sbjct: 269 KVVFPVLLCIFPVIFVVILGPAAINIYDLFS 299


>gi|329928965|ref|ZP_08282775.1| type II secretion system protein F domain protein [Paenibacillus
           sp. HGF5]
 gi|328937217|gb|EGG33644.1| type II secretion system protein F domain protein [Paenibacillus
           sp. HGF5]
          Length = 285

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 82/193 (42%), Gaps = 8/193 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFRR 54
           + ++++R       F  AL  +  S+ AG  V +     V          S  +  E + 
Sbjct: 94  QFMLERRRKTLNLHFKQALYSLSSSLSAGRSVENGFRDAVQDLLLLDPGGSSDLIFELKV 153

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           ++     G  +  ++    R   +++++ F+ V S   + GG+L E +   S ++ ++ +
Sbjct: 154 IVSRLEYGEPIEAALQDFARRAGMEDLTNFADVFSTCKRTGGDLVEVVRRTSSVIGEKLD 213

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           ++ ++  +  + +  +  + + PF +   +  TSP YM  +     G M+   A A +  
Sbjct: 214 IQQEIAVMIAQKRFESKALLAAPFLLLLFMNMTSPDYMEPMY-SGSGIMISTFALAALGG 272

Query: 175 GIMVMRLMINFDV 187
             + +  M+N  V
Sbjct: 273 CFLWINKMMNIKV 285


>gi|313902406|ref|ZP_07835809.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
           13965]
 gi|313467337|gb|EFR62848.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
           13965]
          Length = 326

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 73/155 (47%), Gaps = 2/155 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K    +R  +     P+ +D++  +V AGL +  AV  +  +   PV +EFR+ ++   
Sbjct: 169 LKARATRRKRQLARALPDVMDLLSVAVEAGLGLDGAVQKVTEKFPAPVSTEFRQYLKELR 228

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+S  E++  +     L E+  F+  +    +LG +L+  L   +  LR ++  +A+ Q
Sbjct: 229 LGVSREEALRSLADRAELPELRSFAAAVIQADRLGVSLARVLRVQAEQLRFQRKQRAEEQ 288

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           A+    K    ++  +   +  ++    P  + +L
Sbjct: 289 AMKTPIKMLLPLVLFIFPTLFIVL--LGPALIQIL 321


>gi|54302281|ref|YP_132274.1| tight adherence TadC-like transmembrane protein [Photobacterium
           profundum SS9]
 gi|46915703|emb|CAG22474.1| hypothetical putative tight adherence TadC-related transmembrane
           protein [Photobacterium profundum SS9]
          Length = 322

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           ++   KKR     + FP+ALD++V +  AGL    A+  +  +       + SE + V  
Sbjct: 161 LQKKAKKRIQTLSNAFPDALDLLVVTTEAGLGFLAALNRVANEIDALSPELSSELQIVCR 220

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              LG+ L  ++S+ +    L E+    ++IS   +LG ++ + L   +   RDR+  KA
Sbjct: 221 KVRLGVPLPIALSQFIERTGLLELQGLVSIISQSVKLGSSMGDTLREYAIEFRDRRMQKA 280

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A  +  K    ++  +     T+     P  + VL
Sbjct: 281 EEEAAKIGTKMIFPLVTCIWPGFFTV--AIGPAIIAVL 316


>gi|261401635|ref|ZP_05987760.1| 3-isopropylmalate dehydrogenase [Neisseria lactamica ATCC 23970]
 gi|296313613|ref|ZP_06863554.1| 3-isopropylmalate dehydrogenase [Neisseria polysaccharea ATCC
           43768]
 gi|313667735|ref|YP_004048019.1| pilus-assembly protein [Neisseria lactamica ST-640]
 gi|269208274|gb|EEZ74729.1| 3-isopropylmalate dehydrogenase [Neisseria lactamica ATCC 23970]
 gi|296839851|gb|EFH23789.1| 3-isopropylmalate dehydrogenase [Neisseria polysaccharea ATCC
           43768]
 gi|309378660|emb|CBX22731.1| pilus assembly protein PilG [Neisseria lactamica Y92-1009]
 gi|313005197|emb|CBN86630.1| pilus-assembly protein [Neisseria lactamica 020-06]
          Length = 410

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 54/183 (29%), Gaps = 6/183 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60
           +     +     +D       +   ++AGLP+  A  ++     +  +      +     
Sbjct: 58  RVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRSNVE 117

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +LS + S   +         F   +    + GG L   L  L+      + ++ KV+
Sbjct: 118 QGSTLSRAFSNHPK-----YFDRFYCNLVAAGETGGVLESLLDKLAVYKEKTQAIRKKVK 172

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
                  +   +   L F +   V          +  +        +  +   +    M 
Sbjct: 173 TALTYPVSVIAVAIGLVFVMMIFVLPAFKEVYANMGAELPALTQTVMDMSDFFVSYGWMV 232

Query: 181 LMI 183
           L+ 
Sbjct: 233 LIA 235


>gi|254511547|ref|ZP_05123614.1| type II/IV secretion system protein, TadC subfamily
           [Rhodobacteraceae bacterium KLH11]
 gi|221535258|gb|EEE38246.1| type II/IV secretion system protein, TadC subfamily
           [Rhodobacteraceae bacterium KLH11]
          Length = 325

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 73/158 (46%), Gaps = 4/158 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   +++R    ++ FP+ LD+++  V AG  +  A+  +  +       +  EF  V  
Sbjct: 165 ITRRVEERKEAIVNGFPDTLDLMLVCVEAGQSLDQAIVRVAAEMKASYPDIALEFEVVAY 224

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G      +        +Q+VS F TV+   +  G ++++AL   S  +RD++ M+A
Sbjct: 225 EMKAGKEKDTVLRDFATRCGVQDVSAFVTVMIQSAAFGTSIADALRVYSDEMRDKRVMRA 284

Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154
           +  A  +  K + A ++ ++P  +  LV  ++ G M  
Sbjct: 285 EEAANKLPTKMTLATMMLTVPPLLVILVGPSAKGIMAF 322


>gi|295690793|ref|YP_003594486.1| type II secretion system F domain-containing protein [Caulobacter
           segnis ATCC 21756]
 gi|295432696|gb|ADG11868.1| Type II secretion system F domain protein [Caulobacter segnis ATCC
           21756]
          Length = 327

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 62/148 (41%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + ++ +KR    +  FP++LD+++  V +G+ V  A+  +  +    S  +  E   +  
Sbjct: 166 ITNIAQKRRESIVAAFPDSLDLLLICVESGMSVEAAIQKVSSEIGAQSMELAEELSLLTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   + R      V   +T +    + G  L  AL  +++  R+ +   A
Sbjct: 226 ELSYLPERRQAYENLARRTNHPGVKSVATAMIQAERYGTPLGAALRVMAKENRELRLSSA 285

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++ AK +  +I      +  ++ 
Sbjct: 286 EKKATALPAKLTVPMILFFLPVLFIVIL 313


>gi|163814843|ref|ZP_02206231.1| hypothetical protein COPEUT_00993 [Coprococcus eutactus ATCC 27759]
 gi|158449782|gb|EDP26777.1| hypothetical protein COPEUT_00993 [Coprococcus eutactus ATCC 27759]
          Length = 246

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 75/187 (40%), Gaps = 6/187 (3%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRVIETQH 60
           +   K   +F   L  +  ++ AG  +  A   +  +          ++ E + +I    
Sbjct: 60  RMQKKLNMEFKEMLLSLAANMAAGYSMEKAFVPVYQEMEGLYQGRSYIQGEIKMIIAGLE 119

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +   +   +        L +V  F+ V +V  + GGNL + +  + + + +R  ++ ++ 
Sbjct: 120 MNTDMKILLKNFAERSGLDDVMEFAKVSAVAGRSGGNLIKMMKKMVQTIEERLEVEDEID 179

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +    +    I+ ++PF +   +   +PGYMN L  +  G   + V    + + +   R
Sbjct: 180 TMVTAKRMEYNIMSAMPFVIVLYMRVCNPGYMNALYGNVFGIAAMSVCLIVIFLMVAWGR 239

Query: 181 LMINFDV 187
            + N  V
Sbjct: 240 KITNIRV 246


>gi|187919329|ref|YP_001888360.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
 gi|187717767|gb|ACD18990.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
          Length = 318

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 70/148 (47%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           M+ L++ R  K  +D P+ALD++   V AGL +  A+  +  +    S  ++ EF  V+ 
Sbjct: 150 MRRLVESRQRKLFEDLPDALDLMTVCVEAGLGLDAAMLRVTQEIGVKSHALKDEFDMVLL 209

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G    +++  +     ++++   + ++    + G ++ ++L   +  LR ++ ++A
Sbjct: 210 ELRAGSGREKALRNLSLRTGVEDIDTLAAMLIQADRFGTSVGDSLRVYTDNLRTKRRLRA 269

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + QA  +  K    ++  +   +  ++ 
Sbjct: 270 EEQAAKIALKLLFPLMFFIFPTLLAVLV 297


>gi|325130912|gb|EGC53641.1| Bacterial type II secretion system protein F domain protein
           [Neisseria meningitidis OX99.30304]
 gi|325198977|gb|ADY94433.1| Bacterial type II secretion system protein F domain protein
           [Neisseria meningitidis G2136]
 gi|325203446|gb|ADY98899.1| Bacterial type II secretion system protein F domain protein
           [Neisseria meningitidis M01-240355]
 gi|325205410|gb|ADZ00863.1| Bacterial type II secretion system protein F domain protein
           [Neisseria meningitidis M04-240196]
          Length = 402

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 54/183 (29%), Gaps = 6/183 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60
           +     +     +D       +   ++AGLP+  A  ++     +  +      +     
Sbjct: 50  RVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRGEVE 109

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SLS + S   +         F   +    + GG L   L  L+      + ++ KV+
Sbjct: 110 QGSSLSRAFSNHPK-----YFDRFYCNLVAAGETGGVLESLLDKLAIYKEKTQAIRKKVK 164

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
                  +   +   L F +   V          +  +        +  +   +    M 
Sbjct: 165 TALTYPVSVIAVAIGLVFVMMIFVLPAFKEVYANMGAELPALTQTVMDMSDFFVSYGWMV 224

Query: 181 LMI 183
           L+ 
Sbjct: 225 LIA 227


>gi|294012231|ref|YP_003545691.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
 gi|292675561|dbj|BAI97079.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
          Length = 322

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 72/149 (48%), Gaps = 3/149 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +     +R  + +  FP+ALD+++  V AGL +  A+  +  +   S   V +   +V+ 
Sbjct: 158 ISAKASRRQEEIVHGFPDALDLMLVCVEAGLGLEAAMDRVGRELALSHPLVSAALGKVVL 217

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S  +++ RM   + + E+  F+T++    QLG ++ + L   +  +R+++ M+A
Sbjct: 218 ELRAGRSRQDALRRMADDVDVDEIRSFATLLIQSDQLGSSVGQTLRVYAAEMREKRRMRA 277

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF 146
           + +A  +    S  ++  +   +  ++  
Sbjct: 278 EEKAHRLPVLLSVPLVACMLPVMIGVLML 306


>gi|315649138|ref|ZP_07902229.1| Type II secretion system F domain protein [Paenibacillus vortex
           V453]
 gi|315275454|gb|EFU38811.1| Type II secretion system F domain protein [Paenibacillus vortex
           V453]
          Length = 285

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 82/193 (42%), Gaps = 8/193 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-------SSDPVRSEFRR 54
           + ++ +R       F  AL  +  S+ AG  V +     V         +S  +  E + 
Sbjct: 94  RFMLDRRRKTLNLHFKQALYSLSSSLSAGRSVENGFRDAVQDLLLLDPGASSDLIFELKV 153

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           ++     G  +  ++    R   +++++ F+ V S   + GG+L E +   S ++ ++ +
Sbjct: 154 IVSRLEYGEPIEVALQDFARRAGMEDITNFADVFSTCKRTGGDLVEVVRRTSSVIGEKLD 213

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           ++ ++  +  + +  +  + + PF +   +  TSP YM  +     G ++   A A +  
Sbjct: 214 IQQEISVMIAQKRFESKALLAAPFLLLLFMNMTSPDYMEPMY-SGAGILISTFALAALGG 272

Query: 175 GIMVMRLMINFDV 187
             + +  M+N  V
Sbjct: 273 CFLWISKMMNIKV 285


>gi|239979681|ref|ZP_04702205.1| hypothetical protein SalbJ_09602 [Streptomyces albus J1074]
          Length = 309

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 59/144 (40%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   ++ R        P+ LD++   V +GL    A+  +  +   P   E R  +    
Sbjct: 148 IWQAVRDRREVIDRTLPDFLDVLAVVVSSGLGFRQALDRVAERYEGPWADELRITLRQMD 207

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+S  ++   + R    ++V+ F + +    +LG  +++ L  ++  +R      ++ +
Sbjct: 208 MGVSRRQAFDELRRRNSSEQVAQFVSALQQGEELGSPIADTLIQIATDMRRTDAQNSRRR 267

Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144
           A     KA+   +  L      L+
Sbjct: 268 AAKTIPKATMVTLVFLLPATMILI 291


>gi|307293454|ref|ZP_07573300.1| Type II secretion system F domain protein [Sphingobium
           chlorophenolicum L-1]
 gi|306881520|gb|EFN12736.1| Type II secretion system F domain protein [Sphingobium
           chlorophenolicum L-1]
          Length = 330

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 60/148 (40%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + + ++KR+A      P+ALD++V    AGL V  A + +  +   +   +  EF     
Sbjct: 172 IDNKVQKRSAAIRKGLPDALDLLVICAEAGLTVDAAFSRVARELGKAYPELGDEFHLTAI 231

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +   + L  V    T +    + G  L+ AL  LS   R  + M+A
Sbjct: 232 ELSFLTERRMAFENLATRVKLDAVKGVVTTMIQTEKYGTPLASALRVLSAEFRHERMMRA 291

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A  + A  +  +I  +   +  ++ 
Sbjct: 292 EEKAARLPAIMTVPLILFILPTLFVVIL 319


>gi|83749807|ref|ZP_00946779.1| PilC [Ralstonia solanacearum UW551]
 gi|207744384|ref|YP_002260776.1| fimbrial assembly protein [Ralstonia solanacearum IPO1609]
 gi|83723518|gb|EAP70724.1| PilC [Ralstonia solanacearum UW551]
 gi|206595789|emb|CAQ62716.1| fimbrial assembly protein [Ralstonia solanacearum IPO1609]
          Length = 421

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 55/180 (30%), Gaps = 7/180 (3%)

Query: 2   KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ 59
           K     R  K    D       +   ++AG+P+  +V +I    ++         +    
Sbjct: 69  KRRRAARGKKITPKDVAYFTRQLSTMLKAGVPLLQSVDIIARGHANPNFTQLLTEIRVDI 128

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G S++++  R  +             +    + GG L   L  LS  +     +KA++
Sbjct: 129 ESGSSMAQAFRRHPK-----YFDSLYCNLIDAGEQGGILDALLERLSMYMEKSIALKAQI 183

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           ++  +   +   +   +   +   V                   L+ +  +   +    +
Sbjct: 184 KSAMIYPISVLTVAFLVTVVLMIFVVPAFKNVFASFGATLPAPTLVVMNISDFFVKWWYI 243


>gi|207721487|ref|YP_002251927.1| fimbrial assembly protein [Ralstonia solanacearum MolK2]
 gi|206586647|emb|CAQ17233.1| fimbrial assembly protein [Ralstonia solanacearum MolK2]
          Length = 421

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 55/180 (30%), Gaps = 7/180 (3%)

Query: 2   KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ 59
           K     R  K    D       +   ++AG+P+  +V +I    ++         +    
Sbjct: 69  KRRRAARGKKITPKDVAYFTRQLSTMLKAGVPLLQSVDIIARGHANPNFTQLLTEIRVDI 128

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G S++++  R  +             +    + GG L   L  LS  +     +KA++
Sbjct: 129 ESGSSMAQAFRRHPK-----YFDSLYCNLIDAGEQGGILDALLERLSMYMEKSIALKAQI 183

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           ++  +   +   +   +   +   V                   L+ +  +   +    +
Sbjct: 184 KSAMIYPISVLTVAFLVTVVLMIFVVPAFKNVFASFGATLPAPTLVVMNISDFFVKWWYI 243


>gi|56477520|ref|YP_159109.1| type II secretion system protein [Aromatoleum aromaticum EbN1]
 gi|56313563|emb|CAI08208.1| Bacterial type II secretion system protein, probably involved in
           Flp pilus synthesis [Aromatoleum aromaticum EbN1]
          Length = 315

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 68/165 (41%), Gaps = 4/165 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +  LI  R  +  + FP+ALD++   V AGL V  A+  +  +    S+ +  E   V  
Sbjct: 147 LNRLIFVRQREIFETFPDALDLMTVCVEAGLGVEAALVRVADEMQHKSEALAEELHLVTL 206

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL  + ++  +     ++EV  F  ++    + G +++ +L   S +LR R+  +A
Sbjct: 207 ELRAGLERARALRNLAARTGVEEVEGFVAMVIQAERFGTSIATSLRIHSDMLRTRRRQRA 266

Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           +  A  +        I    P  +  L+         +L+    G
Sbjct: 267 EEAAAKIALKLLFPLIFFIFPSLMLVLLGPAMIQVYRILLPTMAG 311


>gi|325964118|ref|YP_004242024.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470205|gb|ADX73890.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 292

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 60/139 (43%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR  +   + PN LD ++ SV AGL    A+A   G     +  E  R ++   +G    
Sbjct: 142 KRQQEIELELPNTLDQLLISVEAGLGFEAAMARAGGYGDGALSQELMRTLQDIQVGRPRQ 201

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++   +     +Q++  F   +    + G  +++ L   ++  R ++  +A+ +A+ +  
Sbjct: 202 DAYQALADRSSVQDLRSFVRAVIQADKYGIGIAKVLRTQAKQARVKRRQRAEEKAMKLPV 261

Query: 127 KASAWIIGSLPFCVSTLVY 145
           K    ++  +   +  ++ 
Sbjct: 262 KVLFPLLLCIFPVLFIVLL 280


>gi|114331042|ref|YP_747264.1| type II secretion system protein [Nitrosomonas eutropha C91]
 gi|114308056|gb|ABI59299.1| type II secretion system protein [Nitrosomonas eutropha C91]
          Length = 406

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/167 (10%), Positives = 47/167 (28%), Gaps = 6/167 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
             D       +   +++G+P+  A  ++    S+  V      +      G SL+ +  +
Sbjct: 65  DKDITLFTRQLATMMKSGVPLLQAFDIVGKGHSNRAVGKLLMDIKSEVETGSSLANAFKK 124

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    +  G L   L  L+      + +K K+++      +   
Sbjct: 125 HPL-----YFDSLFCNLVAAGEAAGILDNLLDRLATYKEKIQAIKGKIKSALFYPVSIIV 179

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +   +   +   V             D     L+ +  +   +    
Sbjct: 180 VAFIITAVIMIFVIPAFKELFQGFGADLPAPTLMVMTISDFFVAYWW 226



 Score = 40.5 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 41/128 (32%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +     AG+P+ +A+  + G + + V  E  +     ++   +S   S +   M    
Sbjct: 277 RTLSTMFAAGVPLVEALNSVAGAAGNQVYYEATK-----NIQNEVSTGSSLVDAMMATNV 331

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
                  +    +  G+L   L+ ++       +   +  +  ME      +   +   V
Sbjct: 332 FPSMVLQMVSIGEESGSLDAMLSKIADFFEAEVDDAVEALSSLMEPLIMVVLGTLIGGMV 391

Query: 141 STLVYFTS 148
             +     
Sbjct: 392 VAMYLPIF 399


>gi|283778972|ref|YP_003369727.1| type II secretion system protein [Pirellula staleyi DSM 6068]
 gi|283437425|gb|ADB15867.1| type II secretion system protein [Pirellula staleyi DSM 6068]
          Length = 289

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 93/182 (51%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +L   ++AK      +A+D+++ ++ AG  V+ A+A  + +SS P++ +   ++    LG
Sbjct: 105 YLATMKSAKLERQLADAIDLMIGALGAGTGVTSAMAAAIEESSYPLKGQLEDLLARIRLG 164

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
                    + + +PL+    FS+ ++V  ++GG+L+  LA+  R +RDR  +  ++Q+ 
Sbjct: 165 DDPQAVFRSLSQRIPLETFLLFSSTLAVHWEVGGSLAPTLASAGRTIRDRIEIGRRIQSN 224

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
             +++ S   I  L + ++ +V+  SP  M   +N   G  ++  +     +GI+ M  +
Sbjct: 225 IAQSQVSTVFILLLTYFIAAVVWRNSPEQMQAFLNTDMGGSVVAGSMVLQAVGIVWMSAI 284

Query: 183 IN 184
             
Sbjct: 285 SK 286


>gi|304386512|ref|ZP_07368800.1| 3-isopropylmalate dehydrogenase [Neisseria meningitidis ATCC 13091]
 gi|304339341|gb|EFM05413.1| 3-isopropylmalate dehydrogenase [Neisseria meningitidis ATCC 13091]
          Length = 410

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 54/183 (29%), Gaps = 6/183 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60
           +     +     +D       +   ++AGLP+  A  ++     +  +      +     
Sbjct: 58  RVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRGEVE 117

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SLS + S   +         F   +    + GG L   L  L+      + ++ KV+
Sbjct: 118 QGSSLSRAFSNHPK-----YFDRFYCNLVAAGETGGVLESLLDKLAIYKEKTQAIRKKVK 172

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
                  +   +   L F +   V          +  +        +  +   +    M 
Sbjct: 173 TALTYPVSVIAVAIGLVFVMMIFVLPAFKEVYANMGAELPPLTQTVMDMSDFFVSYGWMV 232

Query: 181 LMI 183
           L+ 
Sbjct: 233 LIA 235


>gi|153008064|ref|YP_001369279.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188]
 gi|151559952|gb|ABS13450.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188]
          Length = 333

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 61/157 (38%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + +   KR       +P+ALD+++  V +G+    A   +  +    S  +  E      
Sbjct: 169 VSNRATKRKQSIRRAWPDALDLMLICVESGMSTEAAFRRVADEIGIQSVELAEELMLTNA 228

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   +     L  V   +  +    + G  +S+AL  LS+  RD + + A
Sbjct: 229 ELSFLPERRQAYENLANRTGLDPVKSVTQALIQAERYGTPVSQALRTLSQESRDLRLLDA 288

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           + +A ++  K +  +I      +  ++    P ++ +
Sbjct: 289 EKKAAALPPKLTVPMIVFFLPVLFIVI--LGPAFIQI 323


>gi|261363883|ref|ZP_05976766.1| 3-isopropylmalate dehydrogenase [Neisseria mucosa ATCC 25996]
 gi|288567880|gb|EFC89440.1| 3-isopropylmalate dehydrogenase [Neisseria mucosa ATCC 25996]
          Length = 413

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 69/187 (36%), Gaps = 8/187 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60
           K    K+     +D       +   ++AGLP+  A  ++    S+  +     +V     
Sbjct: 61  KVKATKKRRITQEDITVFTRQLATMMKAGLPLMQAFEIVARGHSNPSMTEMLMQVRADVE 120

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +L +S ++  +         F   +    + GG L   L  L+      + +K KV+
Sbjct: 121 QGSALGKSFAKYPK-----YFDRFYCNLIAAGEAGGVLESLLDKLAVYKEKTQAIKKKVK 175

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
                  +   +  +L F +   V          +  +  G   +++ ++  F+  G ++
Sbjct: 176 TALTYPISIVVVAIALIFVMMRWVLPEFGKVYAGMGAELPGLTQIVMDISKIFVEYGWLM 235

Query: 179 MRLMINF 185
           + ++I F
Sbjct: 236 IVMVIAF 242


>gi|227818621|ref|YP_002822592.1| TadC, component of type IV pilus [Sinorhizobium fredii NGR234]
 gi|36958877|gb|AAQ87302.1| Tyrosine phenol-lyase [Sinorhizobium fredii NGR234]
 gi|227337620|gb|ACP21839.1| TadC, component of type IV pilus [Sinorhizobium fredii NGR234]
          Length = 323

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 61/148 (41%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +++ I KR       +P ALD+++ +V +G+ +  A   +  +    S  V  E      
Sbjct: 165 IRNRITKRQQAIRRAWPEALDLLLITVESGMGIESAFRKVGEEIGAQSPEVAEEILLTTA 224

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   + +   ++ V    T +    + G  L +AL  +++  RD +  +A
Sbjct: 225 ELSYLQDRRQAFENLGQRTGVEGVRAVVTSLIQAEKYGTPLGQALRVMAQENRDMRMSEA 284

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 285 EKKAAALPPKLTVPMIVFFLPVLFAVIV 312


>gi|639482|gb|AAA85695.1| PilG [Neisseria meningitidis]
          Length = 410

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 53/183 (28%), Gaps = 6/183 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60
           +     +     +D       +   + AGLP+  A  ++     +  +      +     
Sbjct: 58  RVKTSSKRKITQEDITVFTRQLSTMINAGLPLMQAFEIVARGHGNPSMTEMLMEIRGQVE 117

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SLS + S   +         F   +    + GG L   L  L+      + ++ KV+
Sbjct: 118 QGSSLSRAFSNHPK-----YFDRFYCNLVAAGETGGVLESLLDKLAIYKEKTQAIRKKVK 172

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
                  +   +   L F +   V          +  +        +  +   +    M 
Sbjct: 173 TALTYPVSVIAVAIGLVFVMMIFVLPAFKEVYANMGAELPALTQTVMDMSDFFVSYGWMV 232

Query: 181 LMI 183
           L+ 
Sbjct: 233 LIA 235


>gi|187927682|ref|YP_001898169.1| type II secretion system protein [Ralstonia pickettii 12J]
 gi|187724572|gb|ACD25737.1| type II secretion system protein [Ralstonia pickettii 12J]
          Length = 320

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 70/164 (42%), Gaps = 4/164 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   ++ R     ++FP+ LD++   V AGL +  A+  +  +       +  E    + 
Sbjct: 153 LARKVEHRQRDVFEEFPDMLDLLTVCVEAGLGLDAAMMRVSDELALRCPVMAEEMELTLL 212

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G    ++++ +     +++V  F++++    + G +L+++L  LS +LR ++ M+A
Sbjct: 213 ELRSGFPKEKALTNLALRTGVEDVDRFASMLIQADRFGTSLADSLRVLSDMLRTKRRMRA 272

Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
           + QA  +        I    P  +  L+         VL+    
Sbjct: 273 EEQAAKIALKLLFPLIFFIFPTLLLVLLGPAFIQIYRVLLPTMT 316


>gi|103486613|ref|YP_616174.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
 gi|98976690|gb|ABF52841.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
          Length = 347

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 62/148 (41%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + ++ +KRT       P+ALD++V    AGL V  A + +  +   +   +  EF     
Sbjct: 181 VDNMRQKRTDAIRKGLPDALDLLVICAEAGLTVDSAFSRVSKELGRAYPELGEEFALTSI 240

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   +   + L+ V    T +    + G  L+ AL  LS   R+ + M+A
Sbjct: 241 ELGFLTERRQAFENLAYRVNLESVKGVVTTMIQTEKYGTPLASALRVLSAEFRNERMMRA 300

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A  + A  +  +I  +   +  ++ 
Sbjct: 301 EEKAARLPAIMTVPLILFILPVLFIVIL 328


>gi|316933034|ref|YP_004108016.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1]
 gi|315600748|gb|ADU43283.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1]
          Length = 324

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 60/148 (40%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           +K+ I+KR       FP+ALD+++  + +G+ +  A   +  +       +  EF     
Sbjct: 166 LKNAIQKRQLSIKRAFPDALDLLLICIESGMSIEAAFRRVSIEIGSQSIPLAEEFTLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   + +   L  V      +    + G  L ++L  +++  RD +  +A
Sbjct: 226 ELSYLQDRKQAYENLAQRTGLDGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEA 285

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 286 EKKAAALPPKLTVPMIVFFLPVLFVVIL 313


>gi|20808466|ref|NP_623637.1| hypothetical protein TTE2067 [Thermoanaerobacter tengcongensis MB4]
 gi|20517084|gb|AAM25241.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis
           MB4]
          Length = 309

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 79/182 (43%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ + +KR  KF   F  A+  I   ++    + +A+  ++  + +P++ E ++++    
Sbjct: 121 LEKIAQKRYVKFNLQFAEAVQDIADYLKISGNIVNALEKVIDTTENPLKDEIKKIVAKVD 180

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+SL E++    +      V  +   +    Q+  N ++    +S  +++R     K+ 
Sbjct: 181 AGISLYEALKDFAKESGSPLVEAWVDSMVFAGQMKANTADICQKMSAKIKERIRQNNKIS 240

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           +     K++  +I ++   +    Y + P Y           +LL +  ++++  + V R
Sbjct: 241 SFMKSTKSTVIMIIAITILLMLSTYTSGPMYAEAFTTTAGKLVLLYIIISYVVTTVFVFR 300

Query: 181 LM 182
            +
Sbjct: 301 AI 302


>gi|218461576|ref|ZP_03501667.1| putative component of pilus protein [Rhizobium etli Kim 5]
          Length = 165

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 61/148 (41%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + + + KR       +P+ALD+++  V +G+ +  A+  +  +    S  +  E      
Sbjct: 7   ISNRMGKRQHSIKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPALAEEMVLTTA 66

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     ++  +     ++ V   +  +    + G  +++AL  L++  RD +  +A
Sbjct: 67  ELSFLPDRRVALENLATRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEA 126

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 127 EKKAAALPPKLTVPMILFFLPVLIAVIL 154


>gi|325111219|ref|YP_004272287.1| type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324971487|gb|ADY62265.1| Type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 461

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 66/158 (41%), Gaps = 3/158 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV--RSEFRRVIET 58
           ++    KR  +     P+ +D++   V  G+ +  A+A +  + SD     +E  R++  
Sbjct: 284 VRQRAAKRRREIEQALPDVIDLLNMCVSQGMTLRPALARVSWEISDTYPAMAEELRIVAE 343

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           Q    +L  +++ M   + + E+   +T++    ++G N+S++L   S  +R     +A 
Sbjct: 344 QANLGTLEHALNNMNERVDVPELHSLTTLLIQTERMGTNVSDSLTEYSDGMRATLQQRAD 403

Query: 119 VQALSM-EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            +A +         ++  +P     L+        +  
Sbjct: 404 QKANAATFKLLFPTVLCLMPAVYFFLLGPAVVELSDFF 441


>gi|295836764|ref|ZP_06823697.1| integral membrane protein [Streptomyces sp. SPB74]
 gi|295826195|gb|EFG64730.1| integral membrane protein [Streptomyces sp. SPB74]
          Length = 300

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 62/144 (43%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   +++R A      P+ LD++   V AGL    A+  +  +   P   E R  +    
Sbjct: 139 IWQAVRERRAVIDRTLPDFLDVLAVVVSAGLGFRQALERVAEKYEGPWADELRITLRQMD 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+S  ++   + R    ++V+ F + +    +LG  ++E L  ++  +R     +A+ +
Sbjct: 199 MGVSRRQAFDELRRRNNSEQVAQFVSALQQGEELGSPIAETLIQIANDMRRTDAQQARRR 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144
           A     KA+   +  +      L+
Sbjct: 259 AAKTIPKATMATLVFMLPATMILI 282


>gi|329912557|ref|ZP_08275772.1| Type IV fimbrial assembly protein PilC [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327545587|gb|EGF30755.1| Type IV fimbrial assembly protein PilC [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 410

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 17/170 (10%), Positives = 49/170 (28%), Gaps = 6/170 (3%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSE 67
                 D       +   ++AG+P+  +  ++    ++  +      +      G SL++
Sbjct: 66  KKITDKDISLFTRQLATMMKAGVPLLQSFDIVAKGHANPSMSKLIMEIRSDVETGTSLNQ 125

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +  +                +    +  G L + L  L+        +K K+++      
Sbjct: 126 AFRKFPL-----YFDPLFCNLVGAGEQAGILEDLLTRLAIYKEKTIAIKGKIKSALFYPI 180

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +   +   +   +   V             D     L+ +A +   +   
Sbjct: 181 SILVVAFVVTAVIMIFVVPAFKEVFKSFGADLPAPTLVVMAISDFFVAYW 230


>gi|148556413|ref|YP_001263995.1| type II secretion system protein [Sphingomonas wittichii RW1]
 gi|148501603|gb|ABQ69857.1| type II secretion system protein [Sphingomonas wittichii RW1]
          Length = 302

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 87/177 (49%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
            + ++D P  +D + + +  G  +  A+A  +  SS  V +     I    LG  L E++
Sbjct: 125 EQLIEDLPFFIDAVRQLIAVGNSLPQALARALPASSPAVHAYLGPAIRRIELGAPLGEAL 184

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            ++   + L E+S  ++ I V  + GG L+  L+N++ ++R+R  +  ++ A + E + S
Sbjct: 185 QQVATRLHLTEISMLASAIRVNIRYGGPLTHILSNIAALIRERGRVAREIAAATAEMRVS 244

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           A ++  +P  ++     ++  Y++  ++  RG  L  VA A  LIG   M  +   D
Sbjct: 245 AKLLAVMPLILAAFFLLSNHAYLDFFLDPQRGRTLALVAVALQLIGAAAMARIQRLD 301


>gi|332798625|ref|YP_004460124.1| Type II secretion system F domain-containing protein
           [Tepidanaerobacter sp. Re1]
 gi|332696360|gb|AEE90817.1| Type II secretion system F domain protein [Tepidanaerobacter sp.
           Re1]
          Length = 307

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 61/156 (39%), Gaps = 1/156 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K  I KR        P+ LD++  SV AGL    A++ +V     P+  E         
Sbjct: 149 LKRNIIKRKTAIYHQLPDTLDLLSVSVSAGLGFDQALSYVVEHMEGPLIQELDTTQREIS 208

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+   E++ R+       E+  F   I+   +LG ++   +   +  +R       + Q
Sbjct: 209 MGIPRKEALERLAARCECDEIYIFVGAINQADELGASIKNVMETQAAAIRLTHKQNVEEQ 268

Query: 121 ALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVL 155
           A  +  K     ++  LP     ++    P  ++ L
Sbjct: 269 AQKLSVKMMVPMVLFILPVTFIIILGPAIPSVISAL 304


>gi|59801994|ref|YP_208706.1| PilG [Neisseria gonorrhoeae FA 1090]
 gi|194099551|ref|YP_002002681.1| PilG [Neisseria gonorrhoeae NCCP11945]
 gi|239999756|ref|ZP_04719680.1| PilG [Neisseria gonorrhoeae 35/02]
 gi|240014913|ref|ZP_04721826.1| PilG [Neisseria gonorrhoeae DGI18]
 gi|240017361|ref|ZP_04723901.1| PilG [Neisseria gonorrhoeae FA6140]
 gi|240081504|ref|ZP_04726047.1| PilG [Neisseria gonorrhoeae FA19]
 gi|240113783|ref|ZP_04728273.1| PilG [Neisseria gonorrhoeae MS11]
 gi|240116517|ref|ZP_04730579.1| PilG [Neisseria gonorrhoeae PID18]
 gi|240118741|ref|ZP_04732803.1| PilG [Neisseria gonorrhoeae PID1]
 gi|240121983|ref|ZP_04734945.1| PilG [Neisseria gonorrhoeae PID24-1]
 gi|240124280|ref|ZP_04737236.1| PilG [Neisseria gonorrhoeae PID332]
 gi|240126491|ref|ZP_04739377.1| PilG [Neisseria gonorrhoeae SK-92-679]
 gi|240128954|ref|ZP_04741615.1| PilG [Neisseria gonorrhoeae SK-93-1035]
 gi|254494543|ref|ZP_05107714.1| pilus-assembly protein [Neisseria gonorrhoeae 1291]
 gi|260439726|ref|ZP_05793542.1| PilG [Neisseria gonorrhoeae DGI2]
 gi|268595569|ref|ZP_06129736.1| pilus assembly protein pilG [Neisseria gonorrhoeae 35/02]
 gi|268597604|ref|ZP_06131771.1| pilus assembly protein pilG [Neisseria gonorrhoeae FA19]
 gi|268599855|ref|ZP_06134022.1| type IV pilus assembly protein [Neisseria gonorrhoeae MS11]
 gi|268602190|ref|ZP_06136357.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID18]
 gi|268604455|ref|ZP_06138622.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID1]
 gi|268682909|ref|ZP_06149771.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID332]
 gi|268685075|ref|ZP_06151937.1| type IV pilus assembly protein [Neisseria gonorrhoeae SK-92-679]
 gi|268687339|ref|ZP_06154201.1| pilus-assembly protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291042974|ref|ZP_06568712.1| pilus assembly protein pilG [Neisseria gonorrhoeae DGI2]
 gi|293398318|ref|ZP_06642509.1| type IV pilus assembly protein PilC [Neisseria gonorrhoeae F62]
 gi|639480|gb|AAC43469.1| PilG [Neisseria gonorrhoeae]
 gi|59718889|gb|AAW90294.1| pilus assembly protein [Neisseria gonorrhoeae FA 1090]
 gi|193934841|gb|ACF30665.1| PilG [Neisseria gonorrhoeae NCCP11945]
 gi|226513583|gb|EEH62928.1| pilus-assembly protein [Neisseria gonorrhoeae 1291]
 gi|268548958|gb|EEZ44376.1| pilus assembly protein pilG [Neisseria gonorrhoeae 35/02]
 gi|268551392|gb|EEZ46411.1| pilus assembly protein pilG [Neisseria gonorrhoeae FA19]
 gi|268583986|gb|EEZ48662.1| type IV pilus assembly protein [Neisseria gonorrhoeae MS11]
 gi|268586321|gb|EEZ50997.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID18]
 gi|268588586|gb|EEZ53262.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID1]
 gi|268623193|gb|EEZ55593.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID332]
 gi|268625359|gb|EEZ57759.1| type IV pilus assembly protein [Neisseria gonorrhoeae SK-92-679]
 gi|268627623|gb|EEZ60023.1| pilus-assembly protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291013113|gb|EFE05082.1| pilus assembly protein pilG [Neisseria gonorrhoeae DGI2]
 gi|291611242|gb|EFF40326.1| type IV pilus assembly protein PilC [Neisseria gonorrhoeae F62]
 gi|317165047|gb|ADV08588.1| PilG [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 410

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 54/183 (29%), Gaps = 6/183 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60
           +     +     +D       +   ++AGLP+  A  ++     +  +      +     
Sbjct: 58  RVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRGQVE 117

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SLS + S   +         F   +    + GG L   L  L+      + ++ KV+
Sbjct: 118 QGSSLSRAFSNHPK-----YFDRFYCNLVAAGETGGVLESLLDKLAIYKEKTQAIRKKVK 172

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
                  +   +   L F +   V          +  +        +  +   +    M 
Sbjct: 173 TALTYPVSVIAVAIGLVFVMMIFVLPAFKEVYANMGAELPPLTQTVMDMSDFFVSYGWMV 232

Query: 181 LMI 183
           L+ 
Sbjct: 233 LIA 235


>gi|239814537|ref|YP_002943447.1| type II secretion system protein [Variovorax paradoxus S110]
 gi|239801114|gb|ACS18181.1| type II secretion system protein [Variovorax paradoxus S110]
          Length = 301

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 73/148 (49%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           ++ +IK R  +  ++FP+A D+++  V AGL +  A+  +  +    S+ +  E      
Sbjct: 135 LRMMIKSRQREIFENFPDAADLMLVCVEAGLGLDAALVKVTEEIRVKSEALAQELHWTNL 194

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+  +     ++E+  F+T+++   + G ++ E+L   S  LR ++ ++A
Sbjct: 195 EMRAGSTREKSLRNLALRTGVEEIGTFATMLTQADRFGTSIGESLRVFSEDLRHKRQVRA 254

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           +  A  +  K    ++  +  C+S ++ 
Sbjct: 255 EELAAKVPTKMLLPLVVCIFPCISAVIL 282


>gi|94497258|ref|ZP_01303830.1| type II secretion system protein [Sphingomonas sp. SKA58]
 gi|94423363|gb|EAT08392.1| type II secretion system protein [Sphingomonas sp. SKA58]
          Length = 329

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 60/148 (40%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + + ++KR+A      P+ALD++V    AGL V  A A +  +   +   +  EF     
Sbjct: 171 IDNKVQKRSAAIRKGLPDALDLLVICAEAGLTVDAAFARVARELGKAYPELGDEFHLTAI 230

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +   + L  V    T +    + G  L+ AL  LS   R  + M+A
Sbjct: 231 ELSFLTERRMAFENLASRVKLDAVKGVVTTMIQTEKYGTPLASALRVLSAEFRHERMMRA 290

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A  + A  +  +I  +   +  ++ 
Sbjct: 291 EEKAARLPAIMTVPLILFILPTLFVVIL 318


>gi|302521640|ref|ZP_07273982.1| integral membrane protein [Streptomyces sp. SPB78]
 gi|318057612|ref|ZP_07976335.1| hypothetical protein SSA3_06724 [Streptomyces sp. SA3_actG]
 gi|318080452|ref|ZP_07987784.1| hypothetical protein SSA3_28136 [Streptomyces sp. SA3_actF]
 gi|302430535|gb|EFL02351.1| integral membrane protein [Streptomyces sp. SPB78]
          Length = 300

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 61/144 (42%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   +++R        P+ LD++   V AGL    A+  +  +   P   E R  +    
Sbjct: 139 IWQAVRERRDVIDRTLPDFLDVLAVVVSAGLGFRQALERVAEKYEGPWADELRITLRQMD 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+S  ++   + R    ++V+ F + +    +LG  ++E L  ++  +R     +A+ +
Sbjct: 199 MGVSRRQAFDELRRRNNSEQVAQFVSALQQGEELGSPIAETLIQIANDMRRTDAQQARRR 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144
           A     KA+   +  +      L+
Sbjct: 259 AAKTIPKATMVTLVFMLPATMILI 282


>gi|220933966|ref|YP_002512865.1| type IV pilin biogenesis protein PilC [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995276|gb|ACL71878.1| type IV pilin biogenesis protein PilC [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 403

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 18/171 (10%), Positives = 45/171 (26%), Gaps = 4/171 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           +      D    L  +   + AG+P+  A  ++     +P   E    +++   G +   
Sbjct: 58  KKKIVPKDIAVFLRQMATMMEAGVPLVQAFDIVGRGHENPSMQELILAMKSDVEGGT--- 114

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
                      +        +    +  G L   L  ++      +++KAK++       
Sbjct: 115 -TFSAALGKHPKYFDDLVVNLVNAGEQAGALETLLDKIATYKEKTESLKAKIKKALFYPT 173

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           A   +   +   +   V             D        +  +        
Sbjct: 174 AVLVVAFIVTAILLIFVVPQFQDLFQGFGADLPVFTQFVIGISEFFQSYWW 224



 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 43/142 (30%), Gaps = 11/142 (7%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLS 66
           R A            +     AG+P+ +A+  + G + + +  E   R+ +    G  L 
Sbjct: 266 RKASIAR----FARTLSTMFAAGVPLVEAMESVAGATGNALYREATLRIRDETAAGTQLQ 321

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++                  +    +  G L + L  ++    +  +      +  ME 
Sbjct: 322 AAMRNTAL------FPNMVVQMVAIGEESGALDDMLDKVADFYEEEVDNMVDSLSSLMEP 375

Query: 127 KASAWIIGSLPFCVSTLVYFTS 148
              A++   +   V  +     
Sbjct: 376 MIMAFLGVVVGGLVIAMYLPIF 397


>gi|163757632|ref|ZP_02164721.1| putative component of pilus protein [Hoeflea phototrophica DFL-43]
 gi|162285134|gb|EDQ35416.1| putative component of pilus protein [Hoeflea phototrophica DFL-43]
          Length = 331

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 65/158 (41%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + +  KKR       +P+ALD+++  V +G+ +  A+  +  +    S  +  EF     
Sbjct: 173 ISNQSKKRQQSIKMAWPDALDLLLICVESGVSIEAAMKRVAEEIAIQSTALAEEFLLTTA 232

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +     L+ V   +  +    + G  +++AL  L++  RD +  +A
Sbjct: 233 ELSYLQDRRVAFENLGNRTGLEAVKSVTQALIQSERYGTPIAQALRVLAQESRDARMTEA 292

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A ++  K +  +I      +  ++    P  + V+
Sbjct: 293 EKKAAALPPKLTVPMILFFLPVLIGVI--LGPAAIQVM 328


>gi|255066086|ref|ZP_05317941.1| 3-isopropylmalate dehydrogenase [Neisseria sicca ATCC 29256]
 gi|255049631|gb|EET45095.1| 3-isopropylmalate dehydrogenase [Neisseria sicca ATCC 29256]
          Length = 413

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 68/187 (36%), Gaps = 8/187 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60
           K    K+     +D       +   ++AGLP+  A  ++    S+  +     +V     
Sbjct: 61  KVKATKKRRITQEDITVFTRQLATMMKAGLPLMQAFEIVARGHSNPSMTEMLMQVRADVE 120

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +L +S ++  +         F   +    + GG L   L  L+      + +K KV+
Sbjct: 121 QGSALGKSFAKYPK-----YFDRFYCNLIAAGEAGGVLESLLDKLAVYKEKTQAIKKKVK 175

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH--MLLGVAAAFMLIGIMV 178
                  +   +  +L F +   V          +  +  G   +++ ++  F+  G ++
Sbjct: 176 TALTYPISIVVVAIALIFVMMRWVLPEFGKVYAGMGAELPGLTKIVMDISKIFVEYGWLM 235

Query: 179 MRLMINF 185
           + ++I  
Sbjct: 236 IVIVIAI 242


>gi|77462448|ref|YP_351952.1| putative Flp pilus assembly protein TadC [Rhodobacter sphaeroides
           2.4.1]
 gi|77386866|gb|ABA78051.1| Putative Flp pilus assembly protein TadC [Rhodobacter sphaeroides
           2.4.1]
          Length = 326

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 75/161 (46%), Gaps = 4/161 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +K   ++R  + +  FP+ALD+++  V AG  +  ++  +  +S      +  EF  V  
Sbjct: 165 IKRRAQERYDQIVSGFPDALDMMLVCVEAGQSLDQSILRVARESAAGYPALAEEFEIVAH 224

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G      +  M   + + +VS F T +   +  G +++EAL   S  +RD++ M+A
Sbjct: 225 EVKAGKERVAVLKDMSERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRA 284

Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + +A ++  K +   ++ ++P  +  L+  +  G    L  
Sbjct: 285 EEKANTLPTKLTLGTMLLTVPPLMLILIGPSVYGIATQLGG 325


>gi|304315118|ref|YP_003850265.1| hypothetical protein MTBMA_c13650 [Methanothermobacter marburgensis
           str. Marburg]
 gi|302588577|gb|ADL58952.1| putative membrane protein [Methanothermobacter marburgensis str.
           Marburg]
          Length = 313

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 71/176 (40%), Gaps = 4/176 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           ++++R        P+ L  I   +RAG+ +  A+  +  Q   P+  E +R +    +G 
Sbjct: 91  MMERRVDAIEQSTPDFLRQIASLLRAGVGLESALEDVSKQGEGPLYDELKRAVIEIKIGR 150

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           +  ++I  M   +  Q +     +I    + GG+LS+ +  ++  LR    +K + +A  
Sbjct: 151 TFDDAILSMSERLKSQNLDRTFRMILEGRRAGGSLSDVIETVAEDLRAVLALKRERKANV 210

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           M +     +   +    +  +     G+M  +         +  AA     G +++
Sbjct: 211 MMSVMFLIVAAIIAAPFALGMIMVYSGFMESVGKPNP----ILGAAKIAAAGYIII 262


>gi|302381751|ref|YP_003817574.1| type II secretion system F domain protein [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302192379|gb|ADK99950.1| Type II secretion system F domain protein [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 333

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 62/148 (41%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +K+ I KR    +  FP+ALD+++  V AG+ +  A+  +  +   +S  +  E   +  
Sbjct: 160 LKNRIAKRQLSIMQAFPDALDLLLICVEAGMSIEAAIVKVSQEIGTTSVELAEELALLSA 219

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   + +      V   ST +    Q G  L  AL  +++  RD +   A
Sbjct: 220 ELSYLPERRMAYEGLAKRTNHPGVRSVSTAMIQAEQYGTPLGSALRTMAKENRDLRLSAA 279

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++ A+ +  +I      +  ++ 
Sbjct: 280 EKKAAALPAQLTVPMIIFFLPVLFVVIL 307


>gi|222056454|ref|YP_002538816.1| type II secretion system protein [Geobacter sp. FRC-32]
 gi|221565743|gb|ACM21715.1| type II secretion system protein [Geobacter sp. FRC-32]
          Length = 405

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/171 (12%), Positives = 49/171 (28%), Gaps = 5/171 (2%)

Query: 10  AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
            K    D           + +GLP+   + ++ GQ  +    E    ++      S    
Sbjct: 60  KKIETKDLVVFTRQFATMIDSGLPLVQCLEILSGQQENKSFKEILIKVKESVESGS---- 115

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                     +        +    + GG L   L  L+  +     +K +V+   +    
Sbjct: 116 TFADALSKHPKAFDQLYVNLVAAGEAGGILDTILNRLAAYIEKAMKLKKQVKGAMVYPIT 175

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
              I   +   +   V  T          +  G   + +A +  L   +++
Sbjct: 176 IMSIAVIVVGVILVFVIPTFAKMFADFGGELPGPTKVVIALSSFLKKYIIV 226



 Score = 38.2 bits (87), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/130 (9%), Positives = 35/130 (26%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+P+ D + ++   +   V  E       Q +    + +          
Sbjct: 273 FTRTLGTMISSGVPIMDGLEIVAKTA-GNVVVEKAIYDVRQAISEGKTMAEPLAA----C 327

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G +   L  ++    D  +         ME     ++  ++  
Sbjct: 328 GVFPPMVVQMISVGEATGAMDAMLNKIADFYDDEVDDAVGALTSMMEPMLMVFLGTTVGG 387

Query: 139 CVSTLVYFTS 148
            V  +     
Sbjct: 388 LVVAMYLPIF 397


>gi|311743553|ref|ZP_07717359.1| type II secretion system protein F protein [Aeromicrobium marinum
           DSM 15272]
 gi|311312683|gb|EFQ82594.1| type II secretion system protein F protein [Aeromicrobium marinum
           DSM 15272]
          Length = 298

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 61/146 (41%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R A    + P+ALD IV S+ +GL    A+             E  R ++   
Sbjct: 140 LSSRARERQAAMELELPDALDKIVISLESGLGFESALMNAAETGKGDFADELVRTLQDIQ 199

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+    +   +V     +++  F   +    + G ++S  + N S  +R ++ ++A+ +
Sbjct: 200 VGMPRRAAYEALVNRTESEDIRRFVRSLIQAEETGVSVSTVVRNQSADMRMKRKLRAEGK 259

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146
           A  +  K    +I  L   +  +V  
Sbjct: 260 AQQVSVKLLFPLIFCLFPVLFVIVLA 285


>gi|167566943|ref|ZP_02359859.1| type II secretion system protein [Burkholderia oklahomensis EO147]
 gi|167574012|ref|ZP_02366886.1| type II secretion system protein [Burkholderia oklahomensis C6786]
          Length = 318

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 67/165 (40%), Gaps = 4/165 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   I  R    ++DFP+ALD++   + AGL +   +  +  +    S  V  E   ++ 
Sbjct: 153 LSRRIASRQRVIVEDFPDALDLLTVCIEAGLGLDAGLMKVADELRLRSPVVADELGLMLL 212

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S   ++  +      +++  FS ++    + G ++  +L  LS  LR ++ M+A
Sbjct: 213 EMRSGFSKETALRNLALRTGAEDIDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 272

Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           + +A  +        I    P  ++ L+          L+    G
Sbjct: 273 EERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRTLLPTMAG 317


>gi|84516638|ref|ZP_01003997.1| type II/IV secretion system protein, TadC subfamily [Loktanella
           vestfoldensis SKA53]
 gi|84509674|gb|EAQ06132.1| type II/IV secretion system protein, TadC subfamily [Loktanella
           vestfoldensis SKA53]
          Length = 316

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 67/148 (45%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +   ++ R    ++ FP++LD+++  V AG  +  ++  +  +       +  EF  V +
Sbjct: 157 VTRRVEVRKEAIINAFPDSLDLMLVCVEAGQSLDQSILRVSNELRTGFPELAEEFEIVSQ 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G   +  +  M     + ++S F TV+   +Q G ++S+AL   +  +RD++ M+A
Sbjct: 217 EAKAGKDKTTVLKDMAERCGVPDISSFVTVMVQSAQFGTSISDALRVYASEMRDKRVMRA 276

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           +  A  +  K +   +      +  ++ 
Sbjct: 277 EEAANKLPTKMTLATMMLTVPPLMAILI 304


>gi|221195456|ref|ZP_03568511.1| bacterial type II secretion system protein F domain protein
           [Atopobium rimae ATCC 49626]
 gi|221184643|gb|EEE17035.1| bacterial type II secretion system protein F domain protein
           [Atopobium rimae ATCC 49626]
          Length = 311

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 66/179 (36%), Gaps = 1/179 (0%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +K   +     P     +  ++ +G  +S A+  +   S   V   F R       G+ +
Sbjct: 131 RKLKLEVSHSMPGIYRTLSVALGSGQTLSQAIEYVGNHSHGAVAQYFIRASLKLRCGMPV 190

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
              +  +   + +   S  +T + +  + G  L       + ++  +   +  +   + +
Sbjct: 191 ESVVEELACDLSVPGSSLLATALVISHRTGSPLRNLFLRTATLVERQSEFERLLSVKTAQ 250

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            + SA I+  LP  +  ++   SP +   L     G +   +A       ++++R ++ 
Sbjct: 251 VRLSARIVCLLPLLLIGVLSLISPDFQKGLTTT-TGIICTLLALGMDAGALVIIRKLMK 308


>gi|302669441|ref|YP_003829401.1| Flp pilus assembly protein TadB [Butyrivibrio proteoclasticus B316]
 gi|302393914|gb|ADL32819.1| Flp pilus assembly protein TadB [Butyrivibrio proteoclasticus B316]
          Length = 254

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 80/192 (41%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRV 55
           K+   K+       F +A+  ++ S++AG  + +A                 +     R+
Sbjct: 63  KNQKNKKCRLIGIQFKDAIFSVLTSLKAGFSIENAFMEARRDMDLLYGKNSDISFYLSRI 122

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
            +     + L + I  M +     ++  F+ V SV  + GGN++E +     ++  +  +
Sbjct: 123 SKGLRNNVPLEKLIFGMGKETTNTDIQDFALVFSVAKRNGGNMTEIIDRTISVISGKLEV 182

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + +++ L    +  A I+  +PF +   +  TSPG+ + L ++  G  L+ V      I 
Sbjct: 183 EKEIEVLISAKRLEARIMNMVPFFIIFYISITSPGFFDALYHNVLGICLMAVCMVIYCIS 242

Query: 176 IMVMRLMINFDV 187
             +   ++N  +
Sbjct: 243 YYLSEKIVNISI 254


>gi|302553855|ref|ZP_07306197.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
 gi|302471473|gb|EFL34566.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
          Length = 295

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 62/162 (38%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I+ R        P+ LD++   V AGL    A+  +  +   P   E R  +    
Sbjct: 134 IWSAIRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVASRYEGPWADELRITLRQMD 193

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+S  ++ + + R    ++V+ F T +    +LG  + + L +L++ +R      A+ +
Sbjct: 194 LGMSRRQAFAELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRK 253

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162
           A     KA+  I   +      L+                G 
Sbjct: 254 AARAVPKATMMITTFMVPATMLLLGAGLILGSGTDFGSVTGK 295


>gi|86355869|ref|YP_467761.1| pilus assembly protein [Rhizobium etli CFN 42]
 gi|86279971|gb|ABC89034.1| probable pilus assembly protein [Rhizobium etli CFN 42]
          Length = 328

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 62/148 (41%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + + + KR       +P+ALD+++  V +G+ +  A+  +  +    S P+  E      
Sbjct: 170 ISNRMSKRQHSIKRAWPDALDLMLICVESGVSMEAAMRRVSEELGEQSPPLAEEMVLTTA 229

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     ++  +     L+ V   +  +    + G  +++AL  L++  RD +  +A
Sbjct: 230 ELSFLPDRRVALDNLAARTQLELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEA 289

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 290 EKKAAALPPKLTVPMILFFLPVLIAVIL 317


>gi|319951073|ref|ZP_08024926.1| Type II secretion system F domain protein [Dietzia cinnamea P4]
 gi|319435233|gb|EFV90500.1| Type II secretion system F domain protein [Dietzia cinnamea P4]
          Length = 300

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 62/156 (39%), Gaps = 1/156 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   ++R  +   +  + LD +  +V AGL    A+A      + P+  E  R ++   
Sbjct: 144 LQSRGQERNDEIALELADTLDQMTIAVEAGLGFDAAMARAGRNGTGPLAQELIRTLQEIQ 203

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G     +  ++     + ++  F   I      G ++++ L   +  +R ++  +A+ +
Sbjct: 204 VGQLRRTAYEQLALRTDVPDLRRFIRAIIQADAYGISVADVLRTQASEMRLKRRQRAEEK 263

Query: 121 ALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           A  +  K     ++  LP     L+  T    M   
Sbjct: 264 AQQVPVKVIFPLLVCILPVLFIVLLGPTVINMMEAF 299


>gi|311743761|ref|ZP_07717567.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
 gi|311312891|gb|EFQ82802.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
          Length = 285

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 67/171 (39%), Gaps = 3/171 (1%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           +P+A+D +  +VRAG+ + +AV  +  +  + +R++F              E++  +   
Sbjct: 109 WPDAVDNLASAVRAGMSLPEAVMQVGERGPEVLRADFVAFGRDYRATGRFEEALDLLKIR 168

Query: 76  MPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           +           + +     GG+L   L  LS  LRD    + ++++        A +  
Sbjct: 169 LADPVGDRVVESLRLARDVGGGDLGRMLRALSAYLRDDLRTRGELESRQSWTVNGARLAV 228

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           + P+ V   +    P  +      P G ++L V AA  L     M  +   
Sbjct: 229 AAPWLVLASMSL-QPDVIAR-FGSPTGTLILVVGAATCLGAYRAMTWIGRL 277


>gi|332560332|ref|ZP_08414654.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N]
 gi|332278044|gb|EGJ23359.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N]
          Length = 326

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 75/161 (46%), Gaps = 4/161 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +K   ++R  + +  FP+ALD+++  V AG  +  ++  +  +S      +  EF  V  
Sbjct: 165 IKRRAQERYDQIVSGFPDALDMMLVCVEAGQSLDQSILRVARESAAGYPALAEEFEMVAH 224

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G      +  M   + + +VS F T +   +  G +++EAL   S  +RD++ M+A
Sbjct: 225 EVKAGKERVAVLKDMSERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRA 284

Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + +A ++  K +   ++ ++P  +  L+  +  G    L  
Sbjct: 285 EEKANTLPTKLTLGTMLLTVPPLMLILIGPSVYGIATQLGG 325


>gi|114568975|ref|YP_755655.1| type II secretion system protein [Maricaulis maris MCS10]
 gi|114339437|gb|ABI64717.1| type II secretion system protein [Maricaulis maris MCS10]
          Length = 331

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 58/157 (36%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           + +L  KR    +  FP+ LD+++  V +G+ +  A   +  +       +  E      
Sbjct: 174 LSNLAAKRQQSIMGAFPDGLDLLLICVESGMSIEAAFHKVSSEVGSQSIELAEELSLTTA 233

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   + +      V    T +    + G  L +AL  +++  RD +   A
Sbjct: 234 ELSYLQDRRVAYENLAKRTNHPGVKAVCTSLIQAERYGTPLGQALRVMAKENRDMRLAAA 293

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           + +A S+ AK +  +I      +  ++    P  +  
Sbjct: 294 EKKAASLPAKLTVPMIIFFLPVLFVVI--LGPAIIRF 328


>gi|126461326|ref|YP_001042440.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|221638311|ref|YP_002524573.1| Type II secretion system protein [Rhodobacter sphaeroides KD131]
 gi|126102990|gb|ABN75668.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|221159092|gb|ACM00072.1| Type II secretion system protein [Rhodobacter sphaeroides KD131]
          Length = 326

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 75/161 (46%), Gaps = 4/161 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +K   ++R  + +  FP+ALD+++  V AG  +  ++  +  +S      +  EF  V  
Sbjct: 165 IKRRAQERYDQIVSGFPDALDMMLVCVEAGQSLDQSILRVARESAAGYPALAEEFEMVAH 224

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G      +  M   + + +VS F T +   +  G +++EAL   S  +RD++ M+A
Sbjct: 225 EVKAGKERVAVLKDMSERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRA 284

Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + +A ++  K +   ++ ++P  +  L+  +  G    L  
Sbjct: 285 EEKANTLPTKLTLGTMLLTVPPLMLILIGPSVYGIATQLGG 325


>gi|297157606|gb|ADI07318.1| integral membrane protein [Streptomyces bingchenggensis BCW-1]
          Length = 297

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 58/143 (40%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            +++R        P+ LD++   V AGL    A+  +  +   P   E R  +    +G+
Sbjct: 139 AVRERRHAIERTLPDFLDVLAVVVSAGLSFRQALDRVAEKYEGPWADELRITLRQMDMGV 198

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S  ++   + +    ++V+ F T +    +LG  + E L  ++  +R      A+ +A  
Sbjct: 199 SRRQAFEELRKRNDSEQVAQFVTTLQQGEELGAPIVETLIAIANDMRRTDAQNARRRAAR 258

Query: 124 MEAKASAWIIGSLPFCVSTLVYF 146
              KA+  +   +      L+  
Sbjct: 259 AVPKATMVVTTFMVPGTMILLIA 281


>gi|292493808|ref|YP_003529247.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
 gi|291582403|gb|ADE16860.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
          Length = 406

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 49/174 (28%), Gaps = 7/174 (4%)

Query: 7   KRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLS 64
           +R  K    +       +   + AG+P+  A  +I     +         +      G +
Sbjct: 59  RRKKKITPKEIAIFSRQLATMMSAGVPLVQAFEIIGRGHENASMQALVLNIKGEVEGGGT 118

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L+E++ +  R             +    +  G L   L  ++      + +K K++    
Sbjct: 119 LAEALKKHPRQ-----FDDLFCNLVNAGEQSGTLETLLDKIATYKEKTEAIKGKIKKALF 173

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
              A   +   +   +   V             D     LL +  + +      
Sbjct: 174 YPTAVVVVAFIITAILLIFVIPQFQTLFQNFGADLPALTLLVLQLSALFQEWWW 227



 Score = 40.1 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 45/128 (35%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +     AG+P+ +A+A + G + + V ++    I  +    +  ++  R  +  P   
Sbjct: 278 RTLSTMFAAGVPLVEAMASVAGAAGNSVYAQGILRIRDEVSTGTQLQAAMRNSQLFPN-- 335

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
                  +    +  G++ + LA ++    +  +      +  +E    A +   +   V
Sbjct: 336 ---MVVQMVAIGEEAGSIDQMLAKVADFYEEEVDNAVDALSSLLEPLIMAILGVLVGGLV 392

Query: 141 STLVYFTS 148
             +     
Sbjct: 393 IAMYLPIF 400


>gi|320095975|ref|ZP_08027590.1| type II secretion system protein [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319977093|gb|EFW08821.1| type II secretion system protein [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 286

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 73/186 (39%), Gaps = 3/186 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     +R  +  + +P  +D +V  VRAG  +   +A +       +R  F    +   
Sbjct: 95  VSSRSHRRAREAREAWPEVVDSLVSGVRAGAALPTLLADLGSGGPPALRGAFEAFGQDYR 154

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKV 119
                  ++ R+   +           + +     G +L+  L +L+ +LR+   ++ ++
Sbjct: 155 AHGRFDVALDRLKDRLADPVADRIVEALRLARSVGGADLARLLTDLAVLLREDARVRGEL 214

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +A       +A +  + P+ V  L+   +      + N P+G  +L +  A  +    +M
Sbjct: 215 EARQSWTVGAARLGVAAPWAVLLLISQGARS--ARVWNTPQGMAVLALGGACCVAAYALM 272

Query: 180 RLMINF 185
           R++   
Sbjct: 273 RVLSRL 278


>gi|302558695|ref|ZP_07311037.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
 gi|302476313|gb|EFL39406.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
          Length = 295

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 61/144 (42%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I+ R        P+ LD++   V AGL    A+  +  +   P   E R  +    
Sbjct: 134 IWSAIRVRRDVIERTLPDFLDVLAVVVSAGLGFRQALDRVSSKYEGPWADELRITLRQMD 193

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+S  ++ + + R    ++V+ F T +    +LG  + + L +L++ +R      A+ +
Sbjct: 194 LGMSRRQAFAELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRK 253

Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144
           A     KA+  I   +      L+
Sbjct: 254 AARAVPKATMMITTFMVPATMILL 277


>gi|90416350|ref|ZP_01224282.1| pilin secretion/fimbrial assembly system protein, PilC [marine
           gamma proteobacterium HTCC2207]
 gi|90332075|gb|EAS47289.1| pilin secretion/fimbrial assembly system protein, PilC [marine
           gamma proteobacterium HTCC2207]
          Length = 404

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 51/166 (30%), Gaps = 6/166 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73
           D       +   ++AG+P+  +  ++     +P       ++ +    G S   ++ R  
Sbjct: 66  DIALFTRQLATMMKAGVPLVQSFDIVADGFDNPTMQALIHQIRDDVAAGGSFPNALRRSP 125

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G L   L  ++      + +KAK++       A   + 
Sbjct: 126 R-----YFDDLFCSLVDSGETAGALETMLDRVATYKEKTEQLKAKIKKALTYPIAVLVVA 180

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             +   +   V        +    D     L  +  + M+    ++
Sbjct: 181 MVVTAILLIKVVPVFAETFSSFGADLPAFTLFVLGLSEMMQEYWLI 226



 Score = 36.3 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 41/131 (31%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +  +  AG+P+ DA+  + G + + +      +V +    G+ L  +I        
Sbjct: 274 FARTLATTFAAGVPIVDALESVAGAAGNALYHDAILKVRDDVTTGVQLQMAIKT------ 327

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            Q        ++   +  G L E L   +    +  +         +E    + +   + 
Sbjct: 328 TQMFPILLQQMTAIGEESGALDEMLEKAALHYEELVDNSVDNLTSLLEPLIMSVLGVLVG 387

Query: 138 FCVSTLVYFTS 148
             +  +     
Sbjct: 388 GLMIAMYLPIF 398


>gi|75674494|ref|YP_316915.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255]
 gi|74419364|gb|ABA03563.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255]
          Length = 325

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 59/148 (39%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           + + I KR       FP+ALD+++  + +G+ +  A   +  ++ +    +  E      
Sbjct: 166 LHNAITKRQLSIKRAFPDALDLLLICLESGMSIEVAFRKVSTETGNQSVALAEELTLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +     ++ V      +    + G  L+++L  +++  RD +  +A
Sbjct: 226 ELSYLQDRKVAYENLANRTGVEGVKSVCLALQQSERYGTPLAQSLRVMAQENRDMRMTEA 285

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 286 EKKAAALPPKLTVPMIVFFLPVLFVVIL 313


>gi|225848333|ref|YP_002728496.1| pilin biogenesis protein [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644500|gb|ACN99550.1| pilin biogenesis protein [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 408

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 68/180 (37%), Gaps = 13/180 (7%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
             D       +   + AG+ ++ A+ ++  Q  +P ++    +V +    G+SLS+++++
Sbjct: 69  ELDLAIFTRQLGAMINAGIGITQALEILAQQMPNPTLQEAINKVRDDVVTGMSLSKTMAK 128

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P      F   +   ++  G L E L   +        +K K+++ S    A   
Sbjct: 129 HPNVFPP-----FLVNLVDAAEESGKLDETLKRATVYYEKLAAIKGKIKSASWYPTAVLV 183

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-------AFMLIGIMVMRLMIN 184
           I   +   + T V  T     + +  +      + +            +IG ++  ++IN
Sbjct: 184 IATLIVLGLLTFVVPTFAEIYSSMGGELPFLTQILINISNNLKSNILFIIGFIIAVVVIN 243



 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/134 (11%), Positives = 37/134 (27%), Gaps = 6/134 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                       +  G+ +  A+ +      + +  E  +  +T               +
Sbjct: 274 ALAKFARTFATLINGGVSIIRAIEIASSTVGNVLIEESLQKTKTDVEKGKP------FSQ 327

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            +         T ++   +  G L E L  ++    D  + +      ++E      I G
Sbjct: 328 SLDKNYFPLMFTAMAAVGENTGRLDEMLDTIASFYEDEVDREVDALISTLEPLMMVVIGG 387

Query: 135 SLPFCVSTLVYFTS 148
            + F +  L     
Sbjct: 388 IVGFILIALYLPIF 401


>gi|103488240|ref|YP_617801.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
 gi|98978317|gb|ABF54468.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
          Length = 326

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 67/149 (44%), Gaps = 3/149 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +     +R  + L+ FP+ LD+++  V AG+ +  A+  +  +       V  +  +   
Sbjct: 160 LTAKADRRRQEILNGFPDCLDLMLVCVEAGMGLEAALDRVGREMTLSHPLVAEQISQTTL 219

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S  E++  +     + E+  F+T++    +LG +++  L   +  +R+++ M+A
Sbjct: 220 ELRAGASREEALRALADRSGVDEIRAFATLLIQSDKLGSSIATTLRIYAAEMREKRRMRA 279

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF 146
           + +A  +    S  ++  +   +  ++  
Sbjct: 280 EEKAHRLPVLLSIPLVACMLPVMIGVLML 308


>gi|46580529|ref|YP_011337.1| hypothetical protein DVU2124 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449948|gb|AAS96597.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 284

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 73/158 (46%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +   IK+R  + ++  P+ALD++V  V AG+ +  A+A +  +   +S  +  E +  I 
Sbjct: 121 LSSRIKERRQEIINALPDALDLLVVCVEAGMGLDQALARVAKELQSTSPVLAEELQLSIL 180

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S ++++  +   + +++V+   T+I      G +++  L   S  +R  +  +A
Sbjct: 181 ELRAGKSRADTLKNLAARVAIEDVNSLVTLIIQADAFGTSIASTLRVYSDTMRTTRFQRA 240

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  A  M  K    ++  +   +   V    P ++ ++
Sbjct: 241 EEIAAKMPVKLLFPLVFCILPALF--VTIMGPAFIKLM 276


>gi|148976656|ref|ZP_01813343.1| putative tight adherence TadC-related transmembrane protein
           [Vibrionales bacterium SWAT-3]
 gi|145964007|gb|EDK29265.1| putative tight adherence TadC-related transmembrane protein
           [Vibrionales bacterium SWAT-3]
          Length = 323

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 75/158 (47%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  + K+R  K  +  P+ALD++V    +GL  + A+  +  +       +  E   V  
Sbjct: 158 LNKMQKERQRKIRNGVPDALDLLVVCTESGLGFNAALGRVANELYISQPELADELDTVCA 217

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+++ ++++++V    L E+    +++S  S++GG+L++ L + +   RD++   A
Sbjct: 218 KIQAGVTMPDALTQLVERTGLHELEGLVSLLSHASRMGGSLAQTLRDYTDDFRDKRQQAA 277

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  A  +  K    ++  +  C    +    PG M V+
Sbjct: 278 EEIAAKIPTKMLFPMLLFIWPC--FFIVALGPGMMIVM 313


>gi|189424714|ref|YP_001951891.1| type II secretion system protein [Geobacter lovleyi SZ]
 gi|189420973|gb|ACD95371.1| type II secretion system protein [Geobacter lovleyi SZ]
          Length = 404

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/171 (12%), Positives = 58/171 (33%), Gaps = 6/171 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71
             D           + +GLP+   + ++  Q   P   E   RV E+   G + ++++++
Sbjct: 63  TKDLVIFTRQFATMIDSGLPLVQCLDILSSQQEKPAFKEILLRVKESVESGSTFADALAK 122

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +             +    ++GG L   L  L+  +     +K +++   +       
Sbjct: 123 HPKA-----FDQLFVNLVAAGEIGGILDTILNRLAAYIEKAMKLKKQIKGAMVYPTTIMS 177

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           I   +   +   V  T          +  G     +  +  L+  +++ ++
Sbjct: 178 IAVIVVGVILVFVIPTFAKMFADFGGELPGPTKFVIGLSNFLLKYIIVIII 228



 Score = 40.5 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 13/130 (10%), Positives = 37/130 (28%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   V +G+P+ D + ++   + + +  E    +        +SE  +        
Sbjct: 272 FTRTLGTMVSSGVPIMDGLEIVAKTAGNKIVEEAIYGVRQA-----ISEGKTMAEPLQSC 326

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G +   L  ++    D  +         ME     ++  ++  
Sbjct: 327 GIFPPMVVQMIAVGEATGAMDAMLTKIADFYDDEVDDAVSAMTAMMEPLLMVFLGTTVGG 386

Query: 139 CVSTLVYFTS 148
            V  +     
Sbjct: 387 LVVAMYLPIF 396


>gi|269795082|ref|YP_003314537.1| type II secretory pathway, component PulF [Sanguibacter keddieii
           DSM 10542]
 gi|269097267|gb|ACZ21703.1| type II secretory pathway, component PulF [Sanguibacter keddieii
           DSM 10542]
          Length = 416

 Score = 77.9 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 59/180 (32%), Gaps = 19/180 (10%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V AGL +   + ++  Q+ + P+      V      GLSLS ++ +  
Sbjct: 78  DLAIMARQMATMVSAGLSLIRTLGILADQTENKPLAKVLGIVRSDVETGLSLSNALVKHP 137

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
              P          I    + GG L ++L + +        ++AKV++         +I 
Sbjct: 138 EAFPP-----IMVNIVRAGETGGFLEKSLLSAADNFEAEVKLRAKVKSAMTYPVVVLFIA 192

Query: 134 GSLPFCVSTLVYFTSPGYMN-------------VLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +    +   +                      VL++     +L  V     ++GI   R
Sbjct: 193 IAAVIGMLLFIVPIFKDMFEGLGGELPAPTQFLVLLSSWMKWLLPLVLVVSAVVGIWWQR 252



 Score = 43.2 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/137 (10%), Positives = 36/137 (26%), Gaps = 5/137 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                       + AG+P+  A+ ++   S +       R      +  S+    S    
Sbjct: 281 AIARFTRNFSTMLGAGVPILQALDIVGSTSGNWAIENALR-----DVEKSVRTGESLSGP 335

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                      T +    +  G++   LA +S           +     +E     ++  
Sbjct: 336 LAHHDVFPPMVTQMIAVGEDAGSMELMLAKISEFYDQEVESTTEQLTSLLEPLMIVFLGA 395

Query: 135 SLPFCVSTLVYFTSPGY 151
            +   +  L       +
Sbjct: 396 IIGGMIIALYMPIFKIF 412


>gi|167957546|ref|ZP_02544620.1| pilin biogenesis protein [candidate division TM7 single-cell
           isolate TM7c]
          Length = 404

 Score = 77.9 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 59/168 (35%), Gaps = 6/168 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +   + AGLP+S ++  +  Q+++    E  + +I     G SLS+S ++      
Sbjct: 68  FTRQLATLIGAGLPLSQSLRTVQEQTTNKRMQEIVQEIISDVEGGKSLSDSFAKHPEA-- 125

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               +     +    +  G + E+L  L+        M +K++   M       +I  + 
Sbjct: 126 ---FNKVYVALVAAGETSGTMDESLKRLAAQQEKDAAMMSKIRGAMMYPSIVLAVIILVV 182

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             +   V     G    L        L+ +  A   I    + L+I  
Sbjct: 183 GFMLFTVVPQVEGLYRDLNKGLPFITLIMINVANFFIHFWWLALLIMI 230


>gi|149175288|ref|ZP_01853910.1| probable secretion system protein TadC [Planctomyces maris DSM
           8797]
 gi|148845897|gb|EDL60238.1| probable secretion system protein TadC [Planctomyces maris DSM
           8797]
          Length = 308

 Score = 77.9 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 64/148 (43%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           ++ LIK R  +     P+ALD++V  V AGL +  A+  +  +       V SEF     
Sbjct: 147 LRLLIKGRVERIFLSLPDALDLLVVCVEAGLGLDAAMRRVSEELEETAPDVCSEFALCNL 206

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G    E +  +     + ++   + ++    + G ++++AL   S  +R +++  A
Sbjct: 207 QLQMGRPRREVLHDLGIRSGVDDMRALAAILIQADKFGSSIAQALRVQSDSMRVKRSQLA 266

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + QA     K    ++  +   +  ++ 
Sbjct: 267 EEQAAMTAVKMIFPLVLFIFPGIFVVLV 294


>gi|239943899|ref|ZP_04695836.1| putative integral membrane protein [Streptomyces roseosporus NRRL
           15998]
 gi|239990353|ref|ZP_04711017.1| putative integral membrane protein [Streptomyces roseosporus NRRL
           11379]
 gi|291447362|ref|ZP_06586752.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
 gi|291350309|gb|EFE77213.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
          Length = 295

 Score = 77.9 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 55/132 (41%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I+ R        P+ LD++   V AGL    A+  +  +   P   E R  +    
Sbjct: 134 IWSAIRVRREHIERTLPDFLDVLAVVVSAGLGFRQALDRVAEKYEGPWSDELRITLRQMD 193

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+S  ++   + R    ++V+ F T +    +LG  + E L  ++  +R      A+ +
Sbjct: 194 MGVSRRQAFEELRRRNDSEQVAMFVTTLQQGEELGAPIVETLIQIANDMRRTDAQNARRK 253

Query: 121 ALSMEAKASAWI 132
           A     KA+  +
Sbjct: 254 AAKAVPKATFAV 265


>gi|220922784|ref|YP_002498086.1| type II secretion system protein [Methylobacterium nodulans ORS
           2060]
 gi|219947391|gb|ACL57783.1| type II secretion system protein [Methylobacterium nodulans ORS
           2060]
          Length = 319

 Score = 77.9 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 67/158 (42%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           +K+   KR A+    +P+ALD+++  V +G+ +  +   +  + ++    +  E      
Sbjct: 163 LKNQTTKRQAEIKKHWPDALDLMLICVESGMAIEHSFRRVSAEMANQSIVLAEELALTTA 222

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +     L+ V   ST +    + G  + +AL  L++  RD++  +A
Sbjct: 223 ELSYLTDRRIAYENLAMRTGLESVKAVSTALVQAERYGTPVGQALRVLAQESRDQRMNEA 282

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A ++  K +  +I      +  ++   +P  + + 
Sbjct: 283 EKKAAALPPKLTVPMILFFLPVLFVVI--LTPAMVQIF 318


>gi|329890992|ref|ZP_08269335.1| bacterial type II secretion system protein F domain protein
           [Brevundimonas diminuta ATCC 11568]
 gi|328846293|gb|EGF95857.1| bacterial type II secretion system protein F domain protein
           [Brevundimonas diminuta ATCC 11568]
          Length = 330

 Score = 77.9 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 62/148 (41%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           +K++I KR A  +  FP++LD+++  V +G+ +  A+  +  +       +  E   +  
Sbjct: 169 LKNMIDKRRASIMAAFPDSLDLLLICVESGMSIEAAIQKVSQEVGGQSIELAEELSLLSA 228

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   M +      +   +T ++     G  L  AL  +++  R+ +   A
Sbjct: 229 ELSYLPDRRMAYEGMAKRTQHPGIKAVATAMTQAETYGTPLGSALRVMAKENRELRLSAA 288

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++ AK +  +I      +  ++ 
Sbjct: 289 EKKAAALPAKLTVPMILFFLPVLFVVIL 316


>gi|238755455|ref|ZP_04616795.1| hypothetical protein yruck0001_3320 [Yersinia ruckeri ATCC 29473]
 gi|238706296|gb|EEP98673.1| hypothetical protein yruck0001_3320 [Yersinia ruckeri ATCC 29473]
          Length = 165

 Score = 77.9 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 70/161 (43%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +  +  +G  ++  +     +    + +EF  +    +LG +     +   R     E  
Sbjct: 1   MNMAASSGANLNQILERCGKEIQGELGNEFNLIYRRLNLGEAPEIVFNDAYRKFNYAEFH 60

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
           FF++VI +  + GG LS+ +  + + + +   +K +   ++ + + +  ++  +P   + 
Sbjct: 61  FFTSVILLNIKQGGQLSDLIKKMHKGITESNKLKQRKAIMTAQIRMTTNVVSLIPIVFTA 120

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            +Y+  P  +  L +   G  ++       ++GI ++R MI
Sbjct: 121 FLYYIDPNSIETLWSQDVGKEIISYIVISEILGIFIIRNMI 161


>gi|260892669|ref|YP_003238766.1| Flp pilus assembly protein TadB-like protein [Ammonifex degensii
           KC4]
 gi|260864810|gb|ACX51916.1| Flp pilus assembly protein TadB-like protein [Ammonifex degensii
           KC4]
          Length = 285

 Score = 77.9 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 82/173 (47%), Gaps = 3/173 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL---SESIS 70
             +P AL  +  +++ G     A+  +      P+R  F  V+       S     E++ 
Sbjct: 105 HQYPMALAALASAMQGGCSFYQALEQVTPTLRPPMRDVFADVLRRVRTSTSPRAYEEAVL 164

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            + +     +++  +  + +  + GGNL E L +L + L +R++ +  V A++ EA+ +A
Sbjct: 165 EVAKAAGFPDLNSLAMSVGLYQRTGGNLVEVLDHLVKCLYERESDRRYVAAVTAEARVTA 224

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             + +LPF +  +    +P +M  + +   G+ L+   A  +L+G  V+R M+
Sbjct: 225 AFLSALPFALMGVFRAVNPEFMRPVFHTLWGNALVVWVALMVLLGNAVVRRMV 277


>gi|120602154|ref|YP_966554.1| type II secretion system protein [Desulfovibrio vulgaris DP4]
 gi|120562383|gb|ABM28127.1| type II secretion system protein [Desulfovibrio vulgaris DP4]
 gi|311234268|gb|ADP87122.1| Type II secretion system F domain protein [Desulfovibrio vulgaris
           RCH1]
          Length = 323

 Score = 77.9 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 73/158 (46%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +   IK+R  + ++  P+ALD++V  V AG+ +  A+A +  +   +S  +  E +  I 
Sbjct: 160 LSSRIKERRQEIINALPDALDLLVVCVEAGMGLDQALARVAKELQSTSPVLAEELQLSIL 219

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S ++++  +   + +++V+   T+I      G +++  L   S  +R  +  +A
Sbjct: 220 ELRAGKSRADTLKNLAARVAIEDVNSLVTLIIQADAFGTSIASTLRVYSDTMRTTRFQRA 279

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  A  M  K    ++  +   +   V    P ++ ++
Sbjct: 280 EEIAAKMPVKLLFPLVFCILPALF--VTIMGPAFIKLM 315


>gi|291451546|ref|ZP_06590936.1| conserved hypothetical protein [Streptomyces albus J1074]
 gi|291354495|gb|EFE81397.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 296

 Score = 77.9 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 59/144 (40%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   ++ R        P+ LD++   V +GL    A+  +  +   P   E R  +    
Sbjct: 135 IWQAVRDRREVIDRTLPDFLDVLAVVVSSGLGFRQALDRVAERYEGPWADELRITLRQMD 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+S  ++   + R    ++V+ F + +    +LG  +++ L  ++  +R      ++ +
Sbjct: 195 MGVSRRQAFDELRRRNSSEQVAQFVSALQQGEELGSPIADTLIQIATDMRRTDAQNSRRR 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144
           A     KA+   +  L      L+
Sbjct: 255 AAKTIPKATMVTLVFLLPATMILI 278


>gi|317123667|ref|YP_004097779.1| type II secretion system F domain [Intrasporangium calvum DSM
           43043]
 gi|315587755|gb|ADU47052.1| Type II secretion system F domain [Intrasporangium calvum DSM
           43043]
          Length = 306

 Score = 77.9 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 69/158 (43%), Gaps = 2/158 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  +       ALD++   V AG     A+  +   +  P+  EF RV+    +G S S
Sbjct: 151 RRQEQVATGLAEALDMLTVCVEAGQGFDAALVQVARSTDGPISGEFARVLSEVQIGKSRS 210

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E+ + +   + L +V  F + I    +LG  ++  L   +  +R  +  +A+ +A  +  
Sbjct: 211 EAFAGLGDRVSLSDVKNFVSAIIQADKLGIPIASVLREQTAAMRLSRRQRAEEKAQKVTV 270

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
           K    ++  +   +  ++    PG + ++     G++L
Sbjct: 271 KILFPLLLCIFPAMFVVI--LGPGIIRMITTLFGGNLL 306


>gi|297202077|ref|ZP_06919474.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
 gi|297148030|gb|EDY58317.2| integral membrane protein [Streptomyces sviceus ATCC 29083]
          Length = 296

 Score = 77.9 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 62/162 (38%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I+ R        P+ LD++   V AGL    A+  +  +   P   E R  +    
Sbjct: 135 IWSAIRVRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVASKYEGPWADELRITLRQMD 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+S  ++ + + R    ++V+ F T +    +LG  + + L +L++ +R      A+ +
Sbjct: 195 LGMSRRQAFAELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRK 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162
           A     KA+  I   +      L+                G 
Sbjct: 255 AARAVPKATMMITTFMVPATMLLLAAGLLLGSGTDFGTITGK 296


>gi|264678228|ref|YP_003278135.1| type II secretion system protein [Comamonas testosteroni CNB-2]
 gi|262208741|gb|ACY32839.1| type II secretion system protein [Comamonas testosteroni CNB-2]
          Length = 303

 Score = 77.9 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 71/158 (44%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           ++ +  +R  +  ++FP+A D+++  V AG+ +  A+  +  +    S+ +  E      
Sbjct: 137 LRWMASRRKREIFENFPDAADLMLVCVEAGMGLDAALGKVTDEIRIKSEALAEELHWTNL 196

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+  +     + E+  F+ +++   + G ++ E+L   S  LR ++ M+A
Sbjct: 197 EMRAGSTREKSLRNLAARTGVDEIHTFTAMLTQADRFGTSIGESLRVFSDDLRHKRQMRA 256

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  A  +  K    ++  +   +   +    P  + ++
Sbjct: 257 EELAAKIPTKMLLPLVTCIFPAII--MVVLGPAIIRIV 292


>gi|118474017|ref|YP_890388.1| type II secretion system protein F [Mycobacterium smegmatis str.
           MC2 155]
 gi|118175304|gb|ABK76200.1| bacterial type II secretion system protein F domain [Mycobacterium
           smegmatis str. MC2 155]
          Length = 210

 Score = 77.9 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 63/183 (34%), Gaps = 2/183 (1%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +   + R  +       ALD++V  +R G    DA     G+S  PV    R V     L
Sbjct: 24  RAAAQHRRDE-SAALQGALDVLVGELRVGAHPVDAFGAAAGESGGPVAEGMRAVAARARL 82

Query: 62  GLSLSESISRMVRYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           G  ++  +  + R   L       +    +    G  L   +      + +R+   A+V+
Sbjct: 83  GADVAAGLDDVARASQLPGHWQRLAVCWRLAQTHGLALGTLMRAAHEDIVERERFSARVR 142

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A     + +A ++  LP     L        +  L+    G  LL +       G++   
Sbjct: 143 AAMAGPRTTALVLAGLPLAGIALGQAIGAAPVAFLVASGAGGWLLVIGVVLACAGLLWSD 202

Query: 181 LMI 183
            + 
Sbjct: 203 RIT 205


>gi|289641001|ref|ZP_06473170.1| type II secretion system protein [Frankia symbiont of Datisca
           glomerata]
 gi|289509121|gb|EFD30051.1| type II secretion system protein [Frankia symbiont of Datisca
           glomerata]
          Length = 286

 Score = 77.9 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 72/184 (39%), Gaps = 3/184 (1%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
              + R     + +P+ +D +  +VRAG+ + + +A +  +   P+R  F R  E     
Sbjct: 96  RRRRTRMHDLRELWPDVVDNLASAVRAGMSLPEGLASVGVRGPVPLRPAFTRFGEDYRAT 155

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQA 121
            S S S+ R+   +           + +  +  G +L   L  LS  LR+    +A+++ 
Sbjct: 156 GSFSASLDRLADDLADPIADRIIESLRMAREVGGTDLGRLLRTLSTFLREDARTRAELET 215

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
                  +A +    P+ V  ++            + P G ++L       ++  M+M+ 
Sbjct: 216 RQSWTVNAARLALGAPWVVLLMLATRGETVRA--YDSPTGVVVLVTGGGVSVLAYMIMKW 273

Query: 182 MINF 185
           +   
Sbjct: 274 IGRL 277


>gi|30248610|ref|NP_840680.1| type II secretion system protein [Nitrosomonas europaea ATCC 19718]
 gi|30180205|emb|CAD84507.1| Bacterial type II secretion system protein [Nitrosomonas europaea
           ATCC 19718]
          Length = 406

 Score = 77.9 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/167 (11%), Positives = 48/167 (28%), Gaps = 6/167 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
             D       +   +++G+P+  A  ++    S+  V      +      G SL+ +  +
Sbjct: 65  DKDITLFTRQLATMMKSGVPLLQAFDIVGKGHSNRAVGKLLMDIKSDVETGNSLANAFRK 124

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    +  G L   L  L+      + +K K+++      +   
Sbjct: 125 HPL-----YFDSLFCNLVAAGEAAGILDSLLDRLATYKEKIQAIKGKIKSALFYPISIIV 179

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +   +   +   V             D     L+ +A +   +    
Sbjct: 180 VAFVITAVIMIFVIPAFKELFQGFGADLPAPTLMVMAISDFFVDYWW 226



 Score = 40.5 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 40/128 (31%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +     AG+P+ +A+  + G + + V  E  R     ++   +S   S +        
Sbjct: 277 RTLSTMFAAGVPLVEALNSVAGAAGNQVYFEATR-----NIQNEVSTGSSLVDAMTATNV 331

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
                  +    +  G+L   L+ ++       +   +  +  ME      +   +   V
Sbjct: 332 FPSMVLQMVSIGEESGSLDAMLSKIADFFEAEVDDAVEALSSLMEPIIMVVLGTLIGGMV 391

Query: 141 STLVYFTS 148
             +     
Sbjct: 392 VAMYLPIF 399


>gi|193782687|ref|NP_436096.2| Pilus assembly protein [Sinorhizobium meliloti 1021]
 gi|307304378|ref|ZP_07584129.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           BL225C]
 gi|193073143|gb|AAK65508.2| Pilus assembly protein [Sinorhizobium meliloti 1021]
 gi|306902580|gb|EFN33174.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           BL225C]
          Length = 321

 Score = 77.5 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 65/158 (41%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +++ I KR       +P ALD+++ +V AG+ +  A   +  +    S     E      
Sbjct: 164 VRNRITKRQQSIRRSWPEALDLLLITVEAGMGIESAFRKVGEEIGTQSPETAEEILLTTA 223

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   + +   ++ V    T +    + G  L +AL  +++  RD +  +A
Sbjct: 224 ELSYLQDRRQAFENLGQRTGVEGVRAVVTSLIQAEKYGTPLGQALRVMAQENRDMRMSEA 283

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A ++  K +  +I      +  ++   +P  + ++
Sbjct: 284 EKRAAALPPKLTVPMILFFLPVLFAVI--ITPAVIQIM 319


>gi|77919352|ref|YP_357167.1| Flp pilus assembly protein TadC [Pelobacter carbinolicus DSM 2380]
 gi|77545435|gb|ABA88997.1| Flp pilus assembly protein TadC [Pelobacter carbinolicus DSM 2380]
          Length = 326

 Score = 77.5 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 66/158 (41%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           +  +++ R  + +   P+ALD++V  V AGL +      +  +       +  EF     
Sbjct: 162 LGFVVRSRQNRIMRALPDALDLMVVCVEAGLGLDMTFRRVGEEIRPLSHDLSDEFHLTNL 221

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G   +E    M     + EVS   T++   S+ G +L++AL   S  +R ++   A
Sbjct: 222 EIRAGKPRNECFKNMSLRTGVPEVSNLMTILIQTSRFGTSLAKALRVHSDAMRIKRRQIA 281

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A     K    ++  +   +  ++    PG + ++
Sbjct: 282 EEKAAKSTVKLIFPLVFFIFPAIFVVL--VGPGVIRII 317


>gi|257095698|ref|YP_003169339.1| type II secretion system protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048222|gb|ACV37410.1| type II secretion system protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 412

 Score = 77.5 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 21/183 (11%), Positives = 53/183 (28%), Gaps = 10/183 (5%)

Query: 1   MKHLIKKR----TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRV 55
           +  + K+R          D       +   ++AG+P+     ++     +  V      +
Sbjct: 55  VSKITKQRFRGGRKISEKDIALFTRQLATMMKAGVPLLQTFEIVGRGHDNPAVGKLLLDI 114

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                 G SLS++  +   +            +    +  G L   L  L+        +
Sbjct: 115 KADVETGSSLSQAFRKYPLH-----FDLLYCNLVAAGEQAGILESLLDRLATYKEKMIAI 169

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K+K+++      A   +   +   +   V             D      + +A +  ++ 
Sbjct: 170 KSKIKSALFYPVAIIVVAFIITAVIMIFVIPAFKEVFKSFGADLPAPTQIVIAMSDFVVD 229

Query: 176 IMV 178
              
Sbjct: 230 YWW 232


>gi|315497460|ref|YP_004086264.1| type II secretion system f domain protein [Asticcacaulis
           excentricus CB 48]
 gi|315415472|gb|ADU12113.1| Type II secretion system F domain protein [Asticcacaulis
           excentricus CB 48]
          Length = 326

 Score = 77.5 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 65/159 (40%), Gaps = 4/159 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + +   KR A  +  FP+ALD+++  V AG+ +  A+  +  +   +S  +  E   ++ 
Sbjct: 165 ISNAASKRRASIVTAFPDALDLLLICVEAGMSIEAALQKVSQEIGSASIELAEELSLLVA 224

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   + R      +    T +    + G  L  AL  +++  R+ +   A
Sbjct: 225 ELSYLPERRMAYEGLARRTNYPGIKSVCTAMIQAEKYGTPLGTALRVMAKENRELRLSAA 284

Query: 118 KVQALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A ++ A+     I+  LP     ++       M+++
Sbjct: 285 EKKAAALPAQLTVPMIVFFLPVLFVVILGPAILNIMDMM 323


>gi|27376545|ref|NP_768074.1| pilus assemble protein [Bradyrhizobium japonicum USDA 110]
 gi|27349686|dbj|BAC46699.1| pilus assemble protein [Bradyrhizobium japonicum USDA 110]
          Length = 324

 Score = 77.5 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           +K+ I KR       FP+ALD+++  + +G+ V  A   +  +       +  EF     
Sbjct: 166 LKNAISKRQLSIKRAFPDALDLLLICIESGMSVEMAFRKVATEIVGQSIALSEEFTLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   + R   L+ V      +    + G  L  +L  +++  RD +  +A
Sbjct: 226 ELSYLQDRKVAYENLARRTGLEGVKSVCLALQQAERYGTPLGHSLRVMAQENRDMRMTEA 285

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 286 EKKAAALPPKLTVPMILFFLPVLFVVIL 313


>gi|328883372|emb|CCA56611.1| putative integral membrane protein [Streptomyces venezuelae ATCC
           10712]
          Length = 321

 Score = 77.5 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 63/162 (38%), Gaps = 1/162 (0%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +V  +RAG   + A++    ++   + +E   V+     G  + E++ +         ++
Sbjct: 156 VVGELRAGWQPAQALSFAARET-GALGAEEAAVLAAARFGGDVPEALRKAADQDGADGLA 214

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
             +    V    G  L+  L  L   LRD +  + +++A    A A+  ++  LP     
Sbjct: 215 GMAACWQVAVDGGAGLAAGLDRLEAALRDHREQRERLRAELAGAWATVAVLAVLPLAGVA 274

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           L        + VL++ P G   L V  A    G+     ++ 
Sbjct: 275 LGAALGADPLRVLLHTPAGLGCLVVGGALEAAGLWWAARIVR 316


>gi|219883050|ref|YP_002478214.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
 gi|219862056|gb|ACL42397.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
          Length = 293

 Score = 77.5 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 63/145 (43%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   ++R      + P+ LD ++ +V AGL    A+A    +   P+ +E  R ++   
Sbjct: 137 LQSRGQERQKLIGLELPDTLDQMMIAVEAGLGFDSAMARAGDKGKGPLANELVRTLQDMQ 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S  E+   +     + ++  F   +      G ++S+ L   +  +R ++  +A+ +
Sbjct: 197 IGRSRREAYEALGERTSVPDLDAFIRSVVQADIYGISISKVLRTQAGEIRLKRRQRAEEK 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145
           A+ +  K    ++  +   +   + 
Sbjct: 257 AMQIPVKVIIPLMLCILPVLFIALL 281


>gi|312136915|ref|YP_004004252.1| type ii secretion system f domain protein [Methanothermus fervidus
           DSM 2088]
 gi|311224634|gb|ADP77490.1| Type II secretion system F domain protein [Methanothermus fervidus
           DSM 2088]
          Length = 339

 Score = 77.5 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 63/164 (38%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R     +  P+ L  +   +RAG+ +  A+  +      P+  E +R      +G S 
Sbjct: 92  ERRRGTIEESTPDFLTQLASELRAGISLESAIDDLTKYGEGPLYDELKRTAIEIKMGRSF 151

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             S+  M   +  ++++    +IS   + G +LS  L +++  LR    +K + ++  M 
Sbjct: 152 ESSLIAMANRLKSEQLNRTFRMISEGRRAGASLSRVLESVAEDLRQVLALKRERKSNVMM 211

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
                 I G +   +   +      +   L +       + +  
Sbjct: 212 YAMFFLIAGLIGAPLVVGLISIVIRFFIDLYSASGAIAGMTLVG 255


>gi|292655192|ref|YP_003535089.1| type IV pilus biogenesis complex membrane subunit [Haloferax
           volcanii DS2]
 gi|291371902|gb|ADE04129.1| type IV pilus biogenesis complex membrane subunit [Haloferax
           volcanii DS2]
          Length = 707

 Score = 77.5 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 58/173 (33%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L K+R        P+ LD +     AGL V  ++  +      P+  E  R +     G 
Sbjct: 479 LRKRRIRAIERSMPDFLDRLASVNEAGLTVVQSLRRVSASDLGPLGDEVERAVRDIDWGA 538

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
               ++ RM R      VS   T+I+      G+L+  L   +   +D + +  +     
Sbjct: 539 DAQTALRRMDRRTASPMVSRSVTLITNAMSASGDLAPVLRIAANEAQDSRRLARERNQEM 598

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
           +      +I   +   +   +  +    +        G   +   ++    G+
Sbjct: 599 LTYLLVIYISFLVFLGIIAALTVSFIPAVEQASAGGVGSGEVAGVSSGAFSGL 651



 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 53/181 (29%), Gaps = 4/181 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIET 58
           +    + R+++     P  +  +    R+G+P    +  +            E   V+  
Sbjct: 161 LTERARTRSSEIEATLPRTVAFVFALSRSGMPFPQVLETLARNEAIYGEAAREVSIVVRD 220

Query: 59  QHLGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                  +  S+  M    P   +  F+  ++     G NLS  L       ++    + 
Sbjct: 221 MDAFGTDVLSSLQTMATRTPSPSLEEFAENLASVLGSGRNLSSFLQEQYERFQEEAEAQQ 280

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +     +   A  ++   +   +  +      G +          ++  V       G +
Sbjct: 281 QQYLDLLSTFAEVYVTVLVAGPLFFITVLVVIGLVLADTLTLI-RIVGYVGIPLASFGFV 339

Query: 178 V 178
           V
Sbjct: 340 V 340


>gi|149911401|ref|ZP_01900019.1| hypothetical putative tight adherence TadC-related
           transmembraneprotein [Moritella sp. PE36]
 gi|149805509|gb|EDM65514.1| hypothetical putative tight adherence TadC-related
           transmembraneprotein [Moritella sp. PE36]
          Length = 325

 Score = 77.5 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 67/158 (42%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +K + K+R A     FP+ALD+++    +GL + ++   +  +   +   +  E   V  
Sbjct: 163 LKKIAKRRMADLKRYFPDALDLLIVCCESGLGLLESFQRVAKELQLAHPYLSYELNLVCS 222

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL+L +++        L+++   ++VI    +LG  ++  +   S   R+++   A
Sbjct: 223 KVRYGLTLQQALKEFSDRTGLEDIRGLNSVIVQSLRLGTGVAATIRIYSDEYREKRLQAA 282

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  A  +  K    ++  +       +    P  + V+
Sbjct: 283 EENAAKLGVKMIFPMMCCIWPS--FFIVAIGPAVLKVM 318


>gi|86147459|ref|ZP_01065771.1| Flp pilus assembly protein TadC [Vibrio sp. MED222]
 gi|85834752|gb|EAQ52898.1| Flp pilus assembly protein TadC [Vibrio sp. MED222]
          Length = 323

 Score = 77.5 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 74/158 (46%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  + K R  K  +  P+ALD++V    +GL  + A+  +  +       +  E   V  
Sbjct: 158 LSKMQKDRQRKIKNGVPDALDLLVVCTESGLGFNAALGRVANELYISQPELADELDTVFA 217

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+++ +++S++V    L E+    +++S  S++GG+L++ L + +   RD++   A
Sbjct: 218 KIQAGVTMPDALSQLVERTGLHELDGLVSLLSHASRMGGSLAQTLRDYTEDFRDKRQQAA 277

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  A  +  K    ++  +  C    +    PG M V+
Sbjct: 278 EEIAAKIPTKMLFPMLLFIWPC--FFIVALGPGMMIVM 313


>gi|304320652|ref|YP_003854295.1| hypothetical protein PB2503_05397 [Parvularcula bermudensis
           HTCC2503]
 gi|303299554|gb|ADM09153.1| hypothetical protein PB2503_05397 [Parvularcula bermudensis
           HTCC2503]
          Length = 338

 Score = 77.5 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 59/148 (39%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + +L+ KR  K    FP++LD+++  V +G+ +  A+  +  +   S   +  E+     
Sbjct: 167 VHNLVTKRKQKIQLSFPDSLDLLLICVESGMSIEAALQKVTEEVAASCPELAEEYGLTTA 226

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +     L+ V   +T +      G  L  +L  ++   R+ +   A
Sbjct: 227 ELSYLQDRKVAYHNLGERTGLEGVKSVTTALIQSEVYGTALGASLRVMAAENREIRMQNA 286

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 287 EKKAAALPPKLTVPMILFFLPVLFVVIL 314


>gi|315606115|ref|ZP_07881146.1| type II secretion system protein [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315312397|gb|EFU60483.1| type II secretion system protein [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 292

 Score = 77.5 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 66/177 (37%), Gaps = 3/177 (1%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
                 +P  +D +V  VRAG  +   +  +  +   P+R  F             + ++
Sbjct: 107 KTVRAAWPEVVDAMVSGVRAGTSLPQVLCELADEGPQPLRFAFDAFSRDYSANGRFASAL 166

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
            RM   +           + +     G +L+  L +L+ +LR+   ++ +++A       
Sbjct: 167 DRMKDEVRDPVADRIVEALRIARSVGGADLTRLLQDLASLLREDARVRGELEARQSWTVG 226

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           +A +  + P+ V  L+          + N P G  +L   A   ++  + M+ +   
Sbjct: 227 AARLGLAAPWVVLLLLSGGG--GSAAVWNSPGGIAVLCAGAGMCVVAYLAMKALGRL 281


>gi|197337342|ref|YP_002157817.1| bipartite nuclear localization signal containing protein [Vibrio
           fischeri MJ11]
 gi|197314594|gb|ACH64043.1| bipartite nuclear localization signal containing protein [Vibrio
           fischeri MJ11]
          Length = 293

 Score = 77.5 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 59/159 (37%), Gaps = 4/159 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +    K    K     P  LD++   V  G+ +  +++ +  +     +     +     
Sbjct: 135 LSSRKKALEEKLSGQLPYLLDLLAMCVHTGMTIESSLSYLAKEMQGFDKDLAHMIARTND 194

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +   + L  ++  +   +P  E+  F   +      G ++ E L  L+  +R  + +  +
Sbjct: 195 RANIVGLEPALDELYVRVPTNEMRSFVMTLKQSLHYGSSIYEILNTLAADIRSVRLLSLE 254

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
            +   + AK S  +I  +   V  L+    PG M ++  
Sbjct: 255 EKVGKLAAKMSVPLILFIMIPVVILIAA--PGVMRMMTG 291


>gi|90411198|ref|ZP_01219211.1| hypothetical putative tight adherence TadC-related transmembrane
           protein [Photobacterium profundum 3TCK]
 gi|90328044|gb|EAS44365.1| hypothetical putative tight adherence TadC-related transmembrane
           protein [Photobacterium profundum 3TCK]
          Length = 224

 Score = 77.1 bits (188), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 72/158 (45%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           ++   KKR  K  + FP+ALD++V +  AGL    A+  +  +       + +E + V  
Sbjct: 63  LQKKAKKRIRKLSNAFPDALDLLVVTTEAGLGFLAALNRVANEIDAISPELSNELQIVCR 122

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              LG+ +  ++++ +    L E+    ++IS   +LG ++ + L   +   RDR+  KA
Sbjct: 123 KVRLGVPMPIALAQFIERTGLLELQGLVSIISQSVKLGSSMGDTLREYAIEFRDRRMQKA 182

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A  +  K    ++  +       V    P  + VL
Sbjct: 183 EEEAAKIGTKMIFPLVTCIWPG--FFVVAVGPAIIAVL 218


>gi|32477705|ref|NP_870699.1| type IV fimbrial assembly protein PilC [Rhodopirellula baltica SH
           1]
 gi|32448259|emb|CAD77776.1| type IV fimbrial assembly protein PilC [Rhodopirellula baltica SH
           1]
 gi|327537902|gb|EGF24602.1| Type II secretion system F domain protein [Rhodopirellula baltica
           WH47]
          Length = 479

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 62/168 (36%), Gaps = 6/168 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AGLP+  ++ ++   Q    +++    V +    G +LSE++++  +   
Sbjct: 75  FTRQLSILQDAGLPILRSLKILEGNQKPGKLKNALMDVCDEIEGGSTLSEAMAKCPK--- 131

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               S     +    + GG L   L  L+  L   +++K KV+   +       +   + 
Sbjct: 132 --VFSRLYVNMIKAGEAGGALETILNRLADFLESAESLKRKVKGALIYPVIVVLVATLIL 189

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             +   +  T     +    D     +L +A +  + G   + +++  
Sbjct: 190 TFIMLFIVPTFEKMFDEFGLDLPAPTVLLIAMSNYIAGYWFLLILMPI 237


>gi|326318390|ref|YP_004236062.1| Type II secretion system F domain-containing protein [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323375226|gb|ADX47495.1| Type II secretion system F domain protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 405

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 56/182 (30%), Gaps = 10/182 (5%)

Query: 3   HLIKKRT---AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIE 57
            + K+R     K    D       +   ++AG+P+  A  ++    ++  V      +  
Sbjct: 51  KIKKRRMRGGKKIKPKDIALFTRQMATMMKAGVPLLQAFDIVGRGNTNASVTKLLNDIRA 110

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G SL+ +  +                +    +  G L   L  L+  +   + +K+
Sbjct: 111 DVETGTSLNAAFRKYPM-----YFDSLYCNLVEAGEAAGILEALLDRLALYMEKTEAIKS 165

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           K+++  M   A   +   +   +   V             D     L  +  + + +   
Sbjct: 166 KIRSALMYPTAVIIVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLFVMGVSEIFVKWW 225

Query: 178 VM 179
            +
Sbjct: 226 WL 227



 Score = 35.9 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 42/131 (32%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+ +A+  + G S + V +    R+ +    G SL+ ++        
Sbjct: 275 WTRTLSTMFAAGVPLVEALDSVGGASGNSVYAMATERIQQEVSTGTSLTAAMGNA----- 329

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G++   L   +    +  +      +  ME     ++   + 
Sbjct: 330 -NVFPSMVIQMCAIGEESGSIDHMLGKAADFYEEEVDEMVAGLSSLMEPIIIVFLGTIIG 388

Query: 138 FCVSTLVYFTS 148
             V ++     
Sbjct: 389 GIVVSMYLPIF 399


>gi|229829729|ref|ZP_04455798.1| hypothetical protein GCWU000342_01826 [Shuttleworthia satelles DSM
           14600]
 gi|229791718|gb|EEP27832.1| hypothetical protein GCWU000342_01826 [Shuttleworthia satelles DSM
           14600]
          Length = 231

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 81/188 (43%), Gaps = 6/188 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ------SSDPVRSEFRRV 55
           K   ++R   FL +F + L ++V ++R G    +A  +   +      +  P+ +  +++
Sbjct: 38  KRREQRRYGIFLREFQDYLKLLVAALRNGYSAENAFRLAEEELGKITPADSPLLTAVQKL 97

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                L + L E +  M R +  +E    + +++   +LGG+ S  L   +R +  R  +
Sbjct: 98  SARIRLQMPLEEGLVEMARELGYEEAVNLADLMAFARRLGGDYSRFLERSARSIASRIEL 157

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K ++ A     +    ++  +P  V   V  T+  Y+  L   P G +++ +     L  
Sbjct: 158 KEEMAADLAAKEYEQRVMSVMPLAVLLYVRLTAGAYLEPLYRPPLGTIMMSLCLGLYLGM 217

Query: 176 IMVMRLMI 183
            ++   +I
Sbjct: 218 FLLGERII 225


>gi|119773598|ref|YP_926338.1| MSHA biogenesis protein MshG [Shewanella amazonensis SB2B]
 gi|119766098|gb|ABL98668.1| MSHA biogenesis protein MshG [Shewanella amazonensis SB2B]
          Length = 406

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/177 (10%), Positives = 54/177 (30%), Gaps = 6/177 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLS 66
           R    L++       +    R+G+P+  A+A +   +    ++     +      G  LS
Sbjct: 59  RRRVSLEELQIFTRQMYSLTRSGIPILRAIAGLSETTHSQQMKQALDDISVQLTAGRPLS 118

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +++                 +    +  G L +    LS  L   +  + ++++     
Sbjct: 119 SAMNHHPE-----VFDALFVSMVHVGENTGKLEDVFLQLSGYLEREQETRRRIKSAVRYP 173

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
                 I      ++ +V        +    +      + +A +   +    +  ++
Sbjct: 174 TFVLIAISLAMVILNIMVIPKFADMFSRFGAELPWATRILIATSNFFVNYWWLLALL 230



 Score = 41.6 bits (96), Expect = 0.047,   Method: Composition-based stats.
 Identities = 11/132 (8%), Positives = 36/132 (27%), Gaps = 5/132 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                      + AG+P++ A++++     +    +    +        +    S +   
Sbjct: 270 LSRYCRSFAMMMGAGVPMTQALSLVADAVDNAYMHDKIVAMRR-----GIESGESMLRVS 324

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
              +  +     +    +  G L + L + +       +   K     +E      + G 
Sbjct: 325 NHSKLFTPLVLQMVAVGEETGQLEQLLNDAADFYEGEVDYDLKNLTAKLEPILIGIVAGI 384

Query: 136 LPFCVSTLVYFT 147
           +      +    
Sbjct: 385 VLILALGIYLPM 396


>gi|92116008|ref|YP_575737.1| type II secretion system protein [Nitrobacter hamburgensis X14]
 gi|91798902|gb|ABE61277.1| type II secretion system protein [Nitrobacter hamburgensis X14]
          Length = 325

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 60/148 (40%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           +K+ I KR       FP+ALD+++  + +G+ +  A   +  +       +  EF     
Sbjct: 166 LKNAITKRQISIKRAFPDALDLLLICIESGMSIEVAFRKVSTEIGSQSVALAEEFTLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   + +   ++ V      +    + G  L+++L  +++  RD +  +A
Sbjct: 226 ELSYLQDRKVAYENLAKRTGVEGVKSVCLALQQSERYGTPLAQSLRVMAQENRDMRMTEA 285

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 286 EKKAAALPPKLTVPMIVFFLPVLFVVIL 313


>gi|317498624|ref|ZP_07956917.1| hypothetical protein HMPREF0996_01899 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316894111|gb|EFV16300.1| hypothetical protein HMPREF0996_01899 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 252

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 74/190 (38%), Gaps = 5/190 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-----VRSEFRRVIE 57
           H + +   K   +F   +  I  S+ AG  + +A+               +  E + +I 
Sbjct: 63  HKVHREKKKLRKEFREMMISIGNSLSAGYSIENALKTAKNDLEMYEEHSLLAKELQLLIN 122

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +   +   +  M  ++ L+E   F+ VIS+  + GGNL E   N    L      K 
Sbjct: 123 KLKMNEPVDNLLFDMAEHVGLEEFYQFAQVISIAKKSGGNLIEITENTIEHLSQAIQTKE 182

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           ++  +    +    I+  +P+ +   V   +PGY ++L     G ++  ++   + I  +
Sbjct: 183 EIHTMIAAKQMEKKIMSVMPYFILLYVRIANPGYFDILYESFAGVLVAVISLLCLWIADI 242

Query: 178 VMRLMINFDV 187
               +   ++
Sbjct: 243 WAERVTEIEI 252


>gi|299132291|ref|ZP_07025486.1| Type II secretion system F domain protein [Afipia sp. 1NLS2]
 gi|298592428|gb|EFI52628.1| Type II secretion system F domain protein [Afipia sp. 1NLS2]
          Length = 325

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 57/148 (38%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           +K+ I KR       FP+ALD+++  V +G+ +  A   +  +       +  EF     
Sbjct: 166 LKNAISKRQLSIKRAFPDALDLLLICVESGMSIEAAFRKVSFEIGSQSVALAEEFTLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   + +   +  V      +    + G  L + L  +++  RD +  +A
Sbjct: 226 ELSYLQDRKTAYENLQKRTGIDGVKSVCMALMQSERYGTPLGQTLRVMAQENRDMRMTEA 285

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 286 EKKAAALPPKLTVPMIVFFLPILFVVIL 313


>gi|327441712|dbj|BAK18077.1| type II secretory pathway, component PulF [Solibacillus silvestris
           StLB046]
          Length = 391

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 58/168 (34%), Gaps = 6/168 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISR 71
             DF          +RAG+ + +A  ++  Q +S P++    +V E    G+  S+++ +
Sbjct: 51  TQDFVIYCRQFATLIRAGVSLVEATNILAKQSTSKPLKKALEKVEEDVRAGIPFSDAVQK 110

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P          +    +  GN+ + L  L+        +  KVQ+          
Sbjct: 111 HPKVFP-----ELFVNMMRSGEATGNIDDTLDRLANSYEKSFRLIKKVQSTLTYPAMLLI 165

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +I  + F +   +  T       +  +     +  VA    L     +
Sbjct: 166 LIVVVVFFMLIFIVPTFVESFESMDAELPTLTVWTVALGEWLRKYWWL 213


>gi|170740616|ref|YP_001769271.1| type II secretion system protein [Methylobacterium sp. 4-46]
 gi|168194890|gb|ACA16837.1| type II secretion system protein [Methylobacterium sp. 4-46]
          Length = 321

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 66/158 (41%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           +K+   KR A+   ++P+ALD+++  V +G+ +  A   +  + ++    +  E      
Sbjct: 163 LKNQTDKRQAQIRKNWPDALDLLLICVESGMAIELAFRRVGVEMANQSIVLAEELALTTA 222

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +     L  V    T +    + G  + +AL  L++  RD++  +A
Sbjct: 223 ELSYLTDRRVAYDNLAIRTGLDSVKAVCTALIQAERYGTPIGQALRVLAQESRDQRMNEA 282

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A ++  K +  +I      +  ++   +P  + V 
Sbjct: 283 EKKAAALPPKLTVPMILFFLPVLFVVI--LTPAMVQVF 318


>gi|299532601|ref|ZP_07045990.1| type II secretion system protein [Comamonas testosteroni S44]
 gi|298719404|gb|EFI60372.1| type II secretion system protein [Comamonas testosteroni S44]
          Length = 303

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 68/148 (45%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           ++ +  +R  +  ++FP+A D+++  V AG+ +  A+  +  +    S+ +  E      
Sbjct: 137 LRWMALRRKREIFENFPDAADLMLVCVEAGMGLDAALGKVTEEIRIKSEALAEELHWTNL 196

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +++  +     + E+  F+ +++   + G ++ E+L   S  LR ++ M+A
Sbjct: 197 EMRAGSTREKALRNLAARTGVDEIHTFTAMLTQADRFGTSIGESLRVFSDDLRHKRQMRA 256

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           +  A  +  K    ++  +   +  +V 
Sbjct: 257 EELAAKIPTKMLFPLVTCIFPAIIMVVL 284


>gi|241662160|ref|YP_002980520.1| type II secretion system protein [Ralstonia pickettii 12D]
 gi|240864187|gb|ACS61848.1| type II secretion system protein [Ralstonia pickettii 12D]
          Length = 313

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 71/160 (44%), Gaps = 5/160 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   IK+R     + FP++LD+I+  V AGL +  AV  +V         +  E+  +  
Sbjct: 149 LAMKIKRRKRDIFEAFPDSLDLIMVCVEAGLGLDSAVLRVVEDMRDARPAMAHEYELLTL 208

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL+  +++        +++VS    ++    + G +++E+L   S +LR ++ M A
Sbjct: 209 ELRAGLAREKALRNFAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRQMLA 268

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + +A  +  K    +I  L   +   V    P  + ++  
Sbjct: 269 EERAAKIGTKVLFPLIFCLFPAL--YVVLLGPAGIQIMAG 306


>gi|87310969|ref|ZP_01093094.1| probable integral membrane protein [Blastopirellula marina DSM
           3645]
 gi|87286259|gb|EAQ78168.1| probable integral membrane protein [Blastopirellula marina DSM
           3645]
          Length = 288

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 68/147 (46%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++   ++R  +  +  P+ +D++V  +  G+  ++A++ +  +   +   +  E   V  
Sbjct: 115 LRSCTQQRQKRLRESLPDFVDLVVTCLEGGMGAAEAISHVHQELTSTHADLSYELGLVAR 174

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              LG+SL +S  RM     ++EV   ST +    + G  + EA+  LS +LR ++  +A
Sbjct: 175 DGTLGISLDKSFRRMAERTGVEEVRTLSTFLEHSQRFGSAMGEAMHELSDMLRYQREQRA 234

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +A     K     +  +   +  ++
Sbjct: 235 EERAQQASVKILIPTLLFIFPTIFVVL 261


>gi|226310159|ref|YP_002770053.1| hypothetical protein BBR47_05720 [Brevibacillus brevis NBRC 100599]
 gi|226093107|dbj|BAH41549.1| conserved hypothetical membrane protein [Brevibacillus brevis NBRC
           100599]
          Length = 311

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 56/144 (38%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   + R  +   D P  LD +  +++AG+ +  A+  ++     P+R EF R  +   
Sbjct: 148 LKKKARDRQHQLRYDLPEFLDTVSVTLQAGVSLDQALREVIKFFDGPIREEFSRFNQELD 207

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+   ++  +++R     E       +    +LG  ++      +  +R  +    K +
Sbjct: 208 LGVQREKAYEQLLRRNDNPEFQMLIKALIQGMRLGVPIAVTFKAQAENMRRIRKELIKEK 267

Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144
           A     K +      +      L+
Sbjct: 268 AAKASPKVTLITTFIVTPTAIILI 291


>gi|83859362|ref|ZP_00952883.1| hypothetical protein OA2633_13195 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852809|gb|EAP90662.1| hypothetical protein OA2633_13195 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 326

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 61/158 (38%), Gaps = 3/158 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + +   KR    +  FP++LD+++  V AG+ +  A+  +  +    S  +  E      
Sbjct: 169 LSNQAAKRRDSIMQAFPDSLDLMLICVEAGMSIEAALHKVAAEIGTNSMELAEELSLTNA 228

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +     L  V   +T +    + G  L +AL  +++  RD +   A
Sbjct: 229 ELAYLQDRRAAFENLGMRTNLPGVKAVATALIQAERYGTPLGQALRVMAKENRDMRMSNA 288

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A ++ AK +  +I      +  ++   +      +
Sbjct: 289 EKKAAALPAKLTVPMILFFLPVLFVVIIGPAAISFQNM 326


>gi|294631144|ref|ZP_06709704.1| integral membrane protein [Streptomyces sp. e14]
 gi|292834477|gb|EFF92826.1| integral membrane protein [Streptomyces sp. e14]
          Length = 295

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 61/144 (42%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I+ R        P+ LD++   V AGL    A+  +  +   P   E R  +    
Sbjct: 134 IWSAIRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVAARYEGPWADELRITLRQMD 193

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+S  ++ + + R    ++V+ F T +    +LG  + + L +L++ +R      A+ +
Sbjct: 194 LGMSRRQAFAELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRK 253

Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144
           A     KA+  I   +      L+
Sbjct: 254 AARAVPKATMMITTFMVPATMILL 277


>gi|94312040|ref|YP_585250.1| type II secretion system protein [Cupriavidus metallidurans CH34]
 gi|93355892|gb|ABF09981.1| Type IV pilus assembly protein PilC [Cupriavidus metallidurans
           CH34]
          Length = 421

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/166 (10%), Positives = 52/166 (31%), Gaps = 6/166 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   ++AG+P+  ++ +I    ++         +      G S++ +  R
Sbjct: 81  EKDIAYFTRQLSTMLKAGVPLLQSIDIIARGHANPNFTQLLTVIRSDIESGSSMATAFRR 140

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +             +    + GG L   L  LS  +     +K ++++  +   A   
Sbjct: 141 HPQ-----YFDTLYCNLIDAGEQGGILDALLERLSLYMEKSIALKGQIKSAMIYPIAVLT 195

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +  ++   +   V     G  +          ++ +  +   +   
Sbjct: 196 VAFAVTVILMLFVIPAFKGVFSSFGASLPAPTMVVINISDFFVQYW 241


>gi|254515229|ref|ZP_05127290.1| type IV pilus biogenesis protein PilC [gamma proteobacterium
           NOR5-3]
 gi|219677472|gb|EED33837.1| type IV pilus biogenesis protein PilC [gamma proteobacterium
           NOR5-3]
          Length = 405

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 56/181 (30%), Gaps = 7/181 (3%)

Query: 4   LIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHL 61
           L   R       D       +   ++AG+P+  +  ++     +P   E    +      
Sbjct: 55  LFSARKKPIKPADIAIFTRQMATMMKAGVPLVQSFDIVGDGLENPSMKELVNGIKNDVSA 114

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L+ S+S+  R+            +    +  G L   L  ++      + +KAK++ 
Sbjct: 115 GGGLALSLSKFPRH-----FDELFCSLVGAGESAGTLEVMLDRVATYKEKTEQLKAKIKK 169

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
                 A   +   +   +   V        +    D     L+ +  +  +     + +
Sbjct: 170 ALTYPTAVIVVALVVSGILLVKVVPQFAETFSSFGADLPAFTLMVLRLSDFMQAWWFIIV 229

Query: 182 M 182
           +
Sbjct: 230 I 230



 Score = 36.6 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 38/130 (29%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +  +  AG+P+ DA+    G + + V S     I       S   +  +     P 
Sbjct: 275 FSRTLATTFNAGVPLVDALESTAGAAGNSVFSAAILQIRDDVTTGSTLYNSVKSTGLFPN 334

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G L E L  ++    +  +      +  ME    + +   +  
Sbjct: 335 -----MLLQMISIGEESGQLDEMLDKVATHYEEAVDNSVDSLSSLMEPMIMSVLGVLVGG 389

Query: 139 CVSTLVYFTS 148
            +  +     
Sbjct: 390 LMIAMYLPIF 399


>gi|254478343|ref|ZP_05091722.1| Bacterial type II secretion system protein F domain
           [Carboxydibrachium pacificum DSM 12653]
 gi|214035701|gb|EEB76396.1| Bacterial type II secretion system protein F domain
           [Carboxydibrachium pacificum DSM 12653]
          Length = 301

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 81/183 (44%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++L ++R  K  + F + + ++   ++     + A      ++ +P++    RV+    
Sbjct: 115 LEYLGRRRIRKTEEQFRDFVKMLGAYLKMVPSFAGAFIKAAEEAENPLKEHTDRVVRKFE 174

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  L E++  + + +    +  ++  I    ++  +LS      ++ L +R  M  ++ 
Sbjct: 175 LGEDLEEALKEL-KNVESTYIKAWADSIIFAVRMKSDLSRVCERTAKKLYERIKMSNRIA 233

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVM 179
           +++++AK+    +  +   +      +SP ++    + P G +++  A     I    V+
Sbjct: 234 SMTVQAKSLMVSLAGVMIVMMAATVMSSPDFLRT-YSTPVGKVVIAYAVLSYFISTFYVL 292

Query: 180 RLM 182
           + +
Sbjct: 293 KKI 295


>gi|153006801|ref|YP_001381126.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5]
 gi|152030374|gb|ABS28142.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5]
          Length = 314

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 68/166 (40%), Gaps = 4/166 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +   I  R  +     P+ALD++V  V AGL +  A+  + G+ +     + SE R    
Sbjct: 148 LSSRIANRLRQIDRALPDALDLLVTCVEAGLGLDAALQRVSGEIALAWPLLSSELRLTFL 207

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+   +   R+       E+   +  ++     G +++ AL   +  +R R+  +A
Sbjct: 208 EVRAGIPRMDGFRRLAARTGSPELRALAATLTQTELFGTSIASALRVQAEGIRIRRMQRA 267

Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162
           + +A  +  K +   I+  LP   + ++   +   M  L+    G 
Sbjct: 268 EERAAYVAVKMTLPLILCILPSLFAVIIGPAAINIMKTLMPMLGGQ 313


>gi|89899611|ref|YP_522082.1| type II secretion system protein [Rhodoferax ferrireducens T118]
 gi|89344348|gb|ABD68551.1| type II secretion system protein [Rhodoferax ferrireducens T118]
          Length = 312

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 4/166 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + HL+  R  +  + FP+ALD++   V AGL    A+  +       S  +  E R V  
Sbjct: 147 LSHLVMVRQREIFESFPDALDLMTVCVEAGLGTEAAMMRVADDLQFKSPALADEMRLVNL 206

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G     ++  +     ++EV  F T+IS   + G +++ +L   + +LR R+  +A
Sbjct: 207 ELRAGAVRERALRNLAIRTGVEEVDGFVTMISQAERFGTSIAASLRIHAELLRTRRRQRA 266

Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162
           +  A  +        I    P  +  L+         VL+    GH
Sbjct: 267 EEAAAKIALKLLFPLIFCIFPSLMVVLMGPAMIQIYRVLLPTMGGH 312


>gi|78186531|ref|YP_374574.1| TadC protein [Chlorobium luteolum DSM 273]
 gi|78166433|gb|ABB23531.1| TadC protein [Chlorobium luteolum DSM 273]
          Length = 313

 Score = 76.7 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 72/158 (45%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           ++ + ++R  +  +  P+ +D++V    +G+ +  A+A I  +    +  +  EF   + 
Sbjct: 153 LRFITQQRHERMRNSLPDMIDLMVVCTESGMGIDSAIARISREMARGNPDLAQEFYLSVL 212

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  E++  +     L++++   T+     + G  ++E+L   S +LR R+  +A
Sbjct: 213 EIRAGATRIEALRNLALRTNLKDMNDLVTMFVQADKFGTGMAESLRVQSDMLRSRRTQRA 272

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  A  +  K +  ++  +   +  L+    P  + ++
Sbjct: 273 EEMAAKIPVKMTIPLVLFIFPTL--LMVLLGPAIIQIM 308


>gi|296444390|ref|ZP_06886355.1| Type II secretion system F domain protein [Methylosinus
           trichosporium OB3b]
 gi|296258037|gb|EFH05099.1| Type II secretion system F domain protein [Methylosinus
           trichosporium OB3b]
          Length = 329

 Score = 76.7 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 64/161 (39%), Gaps = 5/161 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + + I KR       FP+ALD+++  V +GL +  A   +  +    S P+  EF     
Sbjct: 170 LTNAITKRQQSMRIAFPDALDLMLICVESGLSIEHAFRKVGKEIGVRSVPLAEEFALATA 229

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   +     L  V    TV+    + G  L  AL   ++  RD +  +A
Sbjct: 230 ELSYLPDRRQAFHNLAARTGLDCVKQICTVLIQAEKYGTPLGRALRVTAQESRDMRMAEA 289

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158
           + QA ++  K +  +I      +  +V   +P  + V+   
Sbjct: 290 ERQAAALPPKLTVPMIVFFLPVL--MVVVMAPAIIQVMSQS 328


>gi|241763808|ref|ZP_04761854.1| type II secretion system protein [Acidovorax delafieldii 2AN]
 gi|241366940|gb|EER61345.1| type II secretion system protein [Acidovorax delafieldii 2AN]
          Length = 406

 Score = 76.7 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 57/182 (31%), Gaps = 10/182 (5%)

Query: 3   HLIKKRT---AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIE 57
            + K+R     K    D       +   ++AG+P+  A  ++    ++  V      V  
Sbjct: 52  KIKKRRMRSGKKIKPKDIALFTRQLATMMKAGVPLLQAFDIVGRGNTNASVTKLLNDVRA 111

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G SL+ +  +                +    +  G L   L  L+  +   + +K+
Sbjct: 112 DVETGTSLNGAFRKYPM-----YFDSLYCNLVEAGEAAGILEALLDRLALYMEKTEAIKS 166

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           K+++  M   +   +   +   +   V             D     L  +A + + +   
Sbjct: 167 KIKSALMYPISVVIVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLFVMALSEIFVKWW 226

Query: 178 VM 179
            +
Sbjct: 227 WL 228


>gi|254283586|ref|ZP_04958554.1| type IV pilus biogenesis protein PilC [gamma proteobacterium
           NOR51-B]
 gi|219679789|gb|EED36138.1| type IV pilus biogenesis protein PilC [gamma proteobacterium
           NOR51-B]
          Length = 402

 Score = 76.7 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/172 (11%), Positives = 52/172 (30%), Gaps = 7/172 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   ++AG+P+  +  ++     +  +R     +      G  L+ +  +  
Sbjct: 64  DIAIFSRQMATMMKAGVPLVQSFDIVSEGVENESMRDLVTTIKNDVAAGGGLANAFEKHP 123

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           +             +    +  G L   L  ++      + +KAK++       A   + 
Sbjct: 124 K-----YFDDLFCSLVAAGENSGTLETMLDRVATYKEKTEQLKAKIKKALTYPIAVVVVA 178

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             +   +   V  T          D  G  L  +     ++    + ++I  
Sbjct: 179 IIVTGILLVKVVPTFAETFRGFGADLPGFTLFVLGI-SEVVQKWWLAILIGI 229



 Score = 34.7 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 40/130 (30%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +  +  AG+P+ +A+    G + + + S   R      +   ++   S        
Sbjct: 272 FSRTLSTTFAAGVPLVEALDSTAGAAGNAIYSNGIR-----RIRDDVTSGTSLYAAIRST 326

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    ++   +  G+L E L  ++     + +      +  ME    + +   +  
Sbjct: 327 GLFPTLLLQMTSIGEESGSLDEMLGKVADQYEQQVDDAVDNMSALMEPIIMSVLGVLIGG 386

Query: 139 CVSTLVYFTS 148
            +  +     
Sbjct: 387 LMIAMYLPIF 396


>gi|309780755|ref|ZP_07675496.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
 gi|308920437|gb|EFP66093.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
          Length = 313

 Score = 76.7 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 71/160 (44%), Gaps = 5/160 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   IK+R     + FP++LD+I+  V AGL +  AV  +V         +  E+  +  
Sbjct: 149 LAMKIKRRKRDIFEAFPDSLDLIMVCVEAGLGLDSAVLRVVEDMRDARPAMAHEYELLTL 208

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL+  +++        +++VS    ++    + G +++E+L   S +LR ++ M A
Sbjct: 209 ELRAGLAREKALRNFAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRQMLA 268

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + +A  +  K    +I  L   +   V    P  + ++  
Sbjct: 269 EERAAKIGTKVLFPLIFCLFPAL--YVVLLGPAGIQIMAG 306


>gi|307318085|ref|ZP_07597521.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           AK83]
 gi|306896126|gb|EFN26876.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           AK83]
          Length = 321

 Score = 76.7 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 65/158 (41%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +++ I KR       +P ALD+++ +V AG+ +  A   +  +    S     E      
Sbjct: 164 VRNRITKRQQSIRRSWPEALDLLLITVEAGMGIESAFRKVGEEIGTQSPETAEEILLTTA 223

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   + +   ++ V    T +    + G  L +AL  +++  RD +  +A
Sbjct: 224 ELSYLQDRRQAFENLGQRTGVEGVRAVVTSLIQAEKYGTPLGQALRVMAQENRDMRMSEA 283

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A ++  K +  +I      +  ++   +P  + ++
Sbjct: 284 EKRAAALPPKLTVPMILFFLPVLFAVI--ITPAVIQIM 319


>gi|302542847|ref|ZP_07295189.1| putative integral membrane protein [Streptomyces hygroscopicus ATCC
           53653]
 gi|302460465|gb|EFL23558.1| putative integral membrane protein [Streptomyces himastatinicus
           ATCC 53653]
          Length = 297

 Score = 76.7 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 58/143 (40%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            +++R        P+ LD++   V AGL    A+  +  +   P   E R  +    +G+
Sbjct: 139 AVRERKDAIDRTLPDFLDVLAVVVSAGLGFRQALDRVSEKYEGPWADELRITLRQMDMGV 198

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S  ++   + +    ++V+ F T +    +LG  + E L  ++  +R      A+ +A  
Sbjct: 199 SRRQAFEELRKRNDSEQVAQFVTALQQGEELGAPIVETLIAIANDMRRTDAQNARRRAAR 258

Query: 124 MEAKASAWIIGSLPFCVSTLVYF 146
              KA+  I   +      L+  
Sbjct: 259 AVPKATMVITTFMVPGTMVLLVA 281


>gi|120612325|ref|YP_972003.1| type II secretion system protein [Acidovorax citrulli AAC00-1]
 gi|120590789|gb|ABM34229.1| type II secretion system protein [Acidovorax citrulli AAC00-1]
          Length = 405

 Score = 76.7 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 56/182 (30%), Gaps = 10/182 (5%)

Query: 3   HLIKKRT---AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIE 57
            + K+R     K    D       +   ++AG+P+  A  ++    ++  V      +  
Sbjct: 51  KIKKRRMRSGKKIKPKDIALFTRQMATMMKAGVPLLQAFDIVGRGNTNASVTKLLNDIRA 110

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G SL+ +  +                +    +  G L   L  L+  +   + +K+
Sbjct: 111 DVETGTSLNAAFRKYPM-----YFDSLYCNLVEAGEAAGILEALLDRLALYMEKTEAIKS 165

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           K+++  M   A   +   +   +   V             D     L  +  + + +   
Sbjct: 166 KIRSALMYPTAVIIVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLFVMGVSEIFVQWW 225

Query: 178 VM 179
            +
Sbjct: 226 WL 227



 Score = 35.9 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 42/131 (32%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+ +A+  + G S + V +    R+ +    G SL+ ++        
Sbjct: 275 WTRTLSTMFAAGVPLVEALDSVGGASGNSVYAMATERIQQEVSTGTSLTAAMGNA----- 329

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G++   L   +    +  +      +  ME     ++   + 
Sbjct: 330 -NVFPSMVIQMCAIGEESGSIDHMLGKAADFYEEEVDEMVAGLSSLMEPIIIVFLGTIIG 388

Query: 138 FCVSTLVYFTS 148
             V ++     
Sbjct: 389 GIVVSMYLPIF 399


>gi|325958171|ref|YP_004289637.1| type ii secretion system F domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325329603|gb|ADZ08665.1| Type II secretion system F domain protein [Methanobacterium sp.
           AL-21]
          Length = 310

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 76/184 (41%), Gaps = 10/184 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +++R        P+ L  I   +RAG+ +  A+  I  Q   P+ +E +R +    +G S
Sbjct: 92  MERRVDAIEQTTPDFLRQISSLLRAGVGIETALEDISKQGGGPLNAELKRAVIEIKIGSS 151

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             E++  M   +  + +     +I    ++GG+LS+ +  ++  LR    +K + +A  M
Sbjct: 152 FDEALLSMGERLKSKTLDRTFRMILEGKRVGGSLSDVIETVAEDLRAVLALKRERRANVM 211

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL----------INDPRGHMLLGVAAAFMLI 174
            +     I   +    +  +      ++  L               G++++      +LI
Sbjct: 212 MSVMFLIISAIIAAPFALGMIMIYSHFIQSLGKVNPLAEVAYTSAAGYLIIHSIIVGVLI 271

Query: 175 GIMV 178
           GI++
Sbjct: 272 GIVL 275


>gi|77163844|ref|YP_342369.1| type II secretion system protein F [Nitrosococcus oceani ATCC
           19707]
 gi|254435335|ref|ZP_05048842.1| Bacterial type II secretion system protein F domain [Nitrosococcus
           oceani AFC27]
 gi|76882158|gb|ABA56839.1| type II secretion system protein F [Nitrosococcus oceani ATCC
           19707]
 gi|207088446|gb|EDZ65718.1| Bacterial type II secretion system protein F domain [Nitrosococcus
           oceani AFC27]
          Length = 406

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 53/179 (29%), Gaps = 7/179 (3%)

Query: 2   KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQ 59
           K L+ +R  K    +       +   + AG+P+  A  +I          E   ++    
Sbjct: 54  KSLLGQRKKKITPKEIAIFSRQLATMMAAGVPLVQAFEIIGRGHESISMQEMVLKIKGEV 113

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G +L+E++ +  R             +    +  G L   L  ++      + +K K+
Sbjct: 114 EGGGTLAEALKQHPRQFDP-----LFCNLVHAGEQSGTLETLLDKIAMYKEKTEAIKGKI 168

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +       A   +   +   +   V             D     LL +  + +      
Sbjct: 169 KKALFYPTAVVVVAFIITAILLIFVIPQFEALFQNFGADLPALTLLVLKLSALFQEWWW 227



 Score = 38.6 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/128 (10%), Positives = 44/128 (34%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +     AG+P+ +A+  + G + + V ++    I  +    +  ++  R  +  P   
Sbjct: 278 RTLSTMFAAGVPLVEAMVSVAGAAGNSVYTQAILRIRDEVSTGTQLQAAMRSSQLFPN-- 335

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
                  +    +  G++ + L+ ++    +  +      +  +E    A +   +   V
Sbjct: 336 ---MVVQMVAIGEEAGSIDQMLSKVADFYEEEVDNAVDALSSLLEPLIMAILGVLVGGLV 392

Query: 141 STLVYFTS 148
             +     
Sbjct: 393 IAMYLPIF 400


>gi|296122167|ref|YP_003629945.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
 gi|296014507|gb|ADG67746.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
          Length = 312

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 64/158 (40%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + +LI KR        P+ LD++V  V AGL +   +  +  +   ++  +  E      
Sbjct: 150 LAYLISKRKQAIFLQLPDVLDLLVVCVEAGLGLDAGLRRVAEELKDTAPEICGELAMCNL 209

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G +  + +  +     + +V     ++    + G ++++AL   S  +R ++   A
Sbjct: 210 QLQMGRNRRDMLHDLGVRTGVDDVKALVAIMIQADKFGSSIAQALRVQSDSMRVKRRQIA 269

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A     +    ++  +   +  ++    P  + ++
Sbjct: 270 EEKAQKTAVQMLFPMVIFIFPGIFVVL--VGPAAIKMM 305


>gi|168702877|ref|ZP_02735154.1| probable secretion system protein TadC [Gemmata obscuriglobus UQM
           2246]
          Length = 319

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 60/148 (40%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           + HL   R  +     P+ALD++V  V +GL +  A+  +  +       +  EF     
Sbjct: 157 LYHLRSTRQKEIFLTLPDALDLLVVCVESGLGLDAALRKVTDEMKGHAKTICEEFSLANL 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G    E +  +     + +V   + ++    + G ++++AL   S  +R R+   A
Sbjct: 217 QLQMGRPRREVLHDLGVRTGVDDVRSLAAILIQADRFGSSIAQALRVQSDSMRVRRRQIA 276

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A     +    ++  +   +  ++ 
Sbjct: 277 EEKAAKTAVQLIFPLVLFIFPSIFVVLV 304


>gi|118581108|ref|YP_902358.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
 gi|118503818|gb|ABL00301.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
          Length = 302

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 64/158 (40%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           + + +  R  +     P+ LD++  SV AGL +  A+           +P+  E +    
Sbjct: 143 LMYKVNNRKTEIFHTLPDILDLLTVSVEAGLGIDAALNRACESPQFKGNPLAEELKIAAR 202

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G    +++  M     +++V  F T++    + G +LS AL   S  LR ++   A
Sbjct: 203 EIRAGKPRGDALRDMAERTDVEDVRAFVTMLVQTERFGTSLSLALRVHSDSLRTKRRQIA 262

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A     K    +I  +   +  ++    P +  ++
Sbjct: 263 EERAAKTAIKILFPLILFIFPAL--MIILIGPAFFKLM 298


>gi|257790323|ref|YP_003180929.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|317489772|ref|ZP_07948271.1| hypothetical protein HMPREF1023_01970 [Eggerthella sp. 1_3_56FAA]
 gi|325830267|ref|ZP_08163724.1| type II secretion system protein F domain protein [Eggerthella sp.
           HGA1]
 gi|257474220|gb|ACV54540.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|316911118|gb|EFV32728.1| hypothetical protein HMPREF1023_01970 [Eggerthella sp. 1_3_56FAA]
 gi|325487734|gb|EGC90172.1| type II secretion system protein F domain protein [Eggerthella sp.
           HGA1]
          Length = 306

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 4/170 (2%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           AL  I  SVR+ L +  A+        DP+R E  RV+     G +L+ +  RM R    
Sbjct: 135 ALPQIAASVRSSLTLERALRTAASHVEDPLREELARVLADTAYGTTLAMAFERMARRTDS 194

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP- 137
            +V   +  + +Q + GG ++  L  ++     R     +++      + + W +     
Sbjct: 195 PDVRSLAAAVRIQQRFGGAVAPVLDLIAAHAAARLRTSRELKTELAGTRLAKWFVALAMP 254

Query: 138 -FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
                 +++ T+  +       P G ++LGVA      G+   + +   D
Sbjct: 255 AI--FFIMFATNADFSQFYREQPLGWIVLGVAGCSEAFGLFACQRITAMD 302


>gi|163851908|ref|YP_001639951.1| type II secretion system protein [Methylobacterium extorquens PA1]
 gi|218530659|ref|YP_002421475.1| type II secretion system protein [Methylobacterium chloromethanicum
           CM4]
 gi|240139031|ref|YP_002963506.1| hypothetical protein MexAM1_META1p2450 [Methylobacterium extorquens
           AM1]
 gi|254561626|ref|YP_003068721.1| hypothetical protein METDI3213 [Methylobacterium extorquens DM4]
 gi|163663513|gb|ABY30880.1| type II secretion system protein [Methylobacterium extorquens PA1]
 gi|218522962|gb|ACK83547.1| type II secretion system protein [Methylobacterium chloromethanicum
           CM4]
 gi|240009003|gb|ACS40229.1| conserved hypothetical protein; putative membrane protein
           [Methylobacterium extorquens AM1]
 gi|254268904|emb|CAX24865.1| conserved hypothetical protein; putative membrane protein
           [Methylobacterium extorquens DM4]
          Length = 323

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 62/159 (38%), Gaps = 4/159 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           + ++  KR A+    +P+ALD+ +  V +G+ V +A   +       S  +  E   +  
Sbjct: 164 LSNITSKRQAEIRRAWPDALDLCLICVESGMSVENAFRRVSLEVASQSAVLAEELALLTA 223

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +     L+ V   +T +    + G  + +AL  L++  RD +  +A
Sbjct: 224 ELSFLPERRVAYENLALRTGLEIVKSLTTALMQAERYGTPVGQALRVLAQESRDYRMTEA 283

Query: 118 KVQALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A S+  K     I+  LP     L+          +
Sbjct: 284 EKKAASLPPKLTVPMILFFLPVLFVVLLTPAGIQVYEAM 322


>gi|148258240|ref|YP_001242825.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1]
 gi|146410413|gb|ABQ38919.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1]
          Length = 324

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 59/148 (39%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           + + I KR       FP+ALD+++  + +G+ +  A   +  + +     +  EF     
Sbjct: 166 LSNAISKRQLSIKRAFPDALDLLLICIESGMSIEAAFRKVSMEIASQSIALSEEFTLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   + R   L+ V      +    + G  L ++L  +++  RD +  +A
Sbjct: 226 ELSYLQDRKVAYENLARRTGLEGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEA 285

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 286 EKKAAALPPKLTVPMILFFLPVLFVVIL 313


>gi|325964126|ref|YP_004242032.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470213|gb|ADX73898.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 294

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 58/145 (40%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    K+R      +  N LD ++ SV AGL    A+A        P+  E  R ++   
Sbjct: 136 LYSKGKERQKVIQLELANTLDQMLISVEAGLGFEGAMARAGENGKGPLAEELVRTLQDMQ 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S  E+   +     + E+  F   I      G  +S  L   ++++R ++  +A+ +
Sbjct: 196 VGRSRREAYLALAERTSIPELRSFVQAIIQADTYGIAISRVLRVQAKVMRMKRRQRAEEK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145
           A+ +       ++  +   +   + 
Sbjct: 256 AMKLPVMILFPLLFFIFPVLFIAIL 280


>gi|307294432|ref|ZP_07574276.1| Type II secretion system F domain protein [Sphingobium
           chlorophenolicum L-1]
 gi|306880583|gb|EFN11800.1| Type II secretion system F domain protein [Sphingobium
           chlorophenolicum L-1]
          Length = 322

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 71/149 (47%), Gaps = 3/149 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +     +R    +  FP+ALD+++  V AGL +  A+  +  +   S   V +   +V+ 
Sbjct: 158 ISAKAARRQEAIVHGFPDALDLMLVCVEAGLGLEAAMDRVGRELALSHPLVSAALGKVVL 217

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S  +++ RM   + + E+  F+T++    QLG ++ + L   +  +R+++ M+A
Sbjct: 218 ELRAGRSRQDALRRMADDVDVDEIRSFATLLIQSDQLGSSVGQTLRIYAAEMREKRRMRA 277

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF 146
           + +A  +    S  ++  +   +  ++  
Sbjct: 278 EEKAHRLPVLLSVPLVACMLPVMIGVLML 306


>gi|256821932|ref|YP_003145895.1| type II secretion system protein [Kangiella koreensis DSM 16069]
 gi|256795471|gb|ACV26127.1| type II secretion system protein [Kangiella koreensis DSM 16069]
          Length = 414

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 58/176 (32%), Gaps = 8/176 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           D    L  +   ++AG+P+  +  +I     +  V+     +      G   ++S+    
Sbjct: 76  DIAVFLRQLAIMMKAGVPLVQSFDIIGKGHENPSVQDLVMDIKTDVESGNPFADSLRNHP 135

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           +             +    +  G L + L  ++      + +K+K+++  M   A   + 
Sbjct: 136 K-----YFDDLVCDLIHAGEQSGTLEQMLDRIATYKEKTEALKSKIKSAMMYPAAVITVS 190

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA--FMLIGIMVMRLMINFDV 187
            ++   +   V        +    D      + V+ +        + + L+I   V
Sbjct: 191 LAVTAILLIYVVPMFEDLFSNAGADLPALTAMVVSMSENMQANWYIYLGLLIAIVV 246



 Score = 35.1 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 41/129 (31%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +  +  AG+P+ DA+    G   +   R    ++ E    GL ++ ++          
Sbjct: 286 RTLATTFAAGVPLVDALDSAAGASGNAVYRKAIMKIKEDVTTGLQINLAMISTG------ 339

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                   +    +  G +   LA ++ I     +      +  +E     +I G +   
Sbjct: 340 VFPNMVNQMVAIGEESGAVDTMLAKVADIYEQEVDDAVDGLSSLIEPFVIVFIGGVVGTI 399

Query: 140 VSTLVYFTS 148
           +  +     
Sbjct: 400 IVAMYLPIF 408


>gi|148264721|ref|YP_001231427.1| type II secretion system protein [Geobacter uraniireducens Rf4]
 gi|146398221|gb|ABQ26854.1| type II secretion system protein [Geobacter uraniireducens Rf4]
          Length = 405

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 55/179 (30%), Gaps = 13/179 (7%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISR 71
             D           + +GLP+   + ++ GQ  +        +V E+   G + ++++S+
Sbjct: 64  TKDLVVFTRQFATMIDSGLPLVQCLDILAGQQENKTFKDILVKVKESVESGSTFADALSK 123

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +             +    + GG L   L  L+  +     +K +V+   +       
Sbjct: 124 HPKA-----FDQLYVNLVAAGEAGGILDTILNRLAAYIEKAMKLKKQVKGAMVYPATIMS 178

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-------AFMLIGIMVMRLMI 183
           I   +   +   V  T          D      + +A          ++I    +  M 
Sbjct: 179 IAVIVVGVILVFVIPTFAKMFADFGGDLPAPTKIVIALSNFLQRYILVIIAAFFLLKMA 237



 Score = 38.6 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 38/130 (29%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+P+ D + ++   + + V  E    +       S+SE  +        
Sbjct: 273 FTRTLGTMISSGVPIMDGLEIVAKTAGNKVVEEAIYSVRQ-----SISEGKTIAEPLAAC 327

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G +   L  ++    D  +         ME     ++  ++  
Sbjct: 328 GVFPPMVVQMISVGEATGAMDAMLNKIADFYDDEVDDAVGALTSMMEPLLMVFLGTTVGG 387

Query: 139 CVSTLVYFTS 148
            V  +     
Sbjct: 388 LVVAMYLPIF 397


>gi|152980730|ref|YP_001354687.1| PilC type IV pilus assembly protein [Janthinobacterium sp.
           Marseille]
 gi|151280807|gb|ABR89217.1| PilC type IV pilus assembly protein [Janthinobacterium sp.
           Marseille]
          Length = 410

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/172 (11%), Positives = 52/172 (30%), Gaps = 6/172 (3%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSE 67
                 D       +   ++AG+P+  +  ++     +  V    + +      G SL++
Sbjct: 66  KKVSEKDITLFTRQLATMMKAGVPLLQSFDIVAKGNDNPSVSKLVQDIRSDVETGTSLNQ 125

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +  +                +    +  G L + L  L+        +KAK+++      
Sbjct: 126 AFRKFPL-----YFDPLFCNLVGAGEQAGILEDLLTRLAIYKEKTLAIKAKIKSAMFYPV 180

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   +   +   V             D     L+ +A +  ++    +
Sbjct: 181 SILAVAFIVTAVIMIWVVPAFKEVFTSFGADLPAPTLMVMAMSDFMVANWYI 232


>gi|254393103|ref|ZP_05008263.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294814750|ref|ZP_06773393.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064]
 gi|326443129|ref|ZP_08217863.1| putative integral membrane protein [Streptomyces clavuligerus ATCC
           27064]
 gi|197706750|gb|EDY52562.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294327349|gb|EFG08992.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064]
          Length = 295

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 56/137 (40%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
                P+ LD++   V AGL    A+  +  +   P   E R  +    +G+S  ++  +
Sbjct: 145 IERTLPDFLDVLAVVVSAGLGFRQALERVAEKYEGPWSDELRITLRQMDMGVSRRDAFDQ 204

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           + R    ++VS F T +    +LG  + + L  ++  +R      A+ +A     K++  
Sbjct: 205 LRRRNDSEQVSMFVTALQQGEELGAPIVDTLIQIATDMRRTDAQNARREAARAVPKSTLV 264

Query: 132 IIGSLPFCVSTLVYFTS 148
           +   +      L+  + 
Sbjct: 265 VTLVMLPATMILIVVSF 281


>gi|209886535|ref|YP_002290392.1| type II secretion system protein [Oligotropha carboxidovorans OM5]
 gi|209874731|gb|ACI94527.1| type II secretion system protein [Oligotropha carboxidovorans OM5]
          Length = 325

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 59/148 (39%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +K+ I KR       FP+ALD+++  V +G+ +  A   +  +    S P+  E      
Sbjct: 166 LKNAISKRQLSIKRAFPDALDLLLICVESGMSIEAAFRKVSVEIGSQSVPLAEELTLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   + +   L+ V      +    + G  L + L  +++  RD +  +A
Sbjct: 226 ELSYLQDRKMAYENLQKRTGLEGVKSVCMALMQSERYGTPLGQTLRVMAQENRDMRMNEA 285

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A S+  K +  +I      +  ++ 
Sbjct: 286 EKKAASLPPKLTVPMIVFFLPVLFVVIL 313


>gi|256785513|ref|ZP_05523944.1| integral membrane protein [Streptomyces lividans TK24]
          Length = 300

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 60/144 (41%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I+ R        P+ LD++   V AGL    A+  +  +   P   E R  +    
Sbjct: 139 IWSAIRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVSTRYEGPWADELRITLRQMD 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+   E+ + + R    ++V+ F T +    +LG  + + L +L++ +R      A+ +
Sbjct: 199 LGMGRREAFTELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRK 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144
           A     KA+  I   +      L+
Sbjct: 259 AARAVPKATLMITTFMVPATMILL 282


>gi|182436318|ref|YP_001824037.1| putative integral membrane protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326776948|ref|ZP_08236213.1| Type II secretion system F domain protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|178464834|dbj|BAG19354.1| putative integral membrane protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326657281|gb|EGE42127.1| Type II secretion system F domain protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 295

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 55/132 (41%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I+ R        P+ LD++   V AGL    A+  +  +   P   E R  +    
Sbjct: 134 IWSAIRVRREHIERTLPDFLDVLAVVVSAGLGFRQALDRVAEKYEGPWSDELRITLRQMD 193

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+S  ++   + R    ++V+ F T +    +LG  + E L  ++  +R      A+ +
Sbjct: 194 MGVSRRQAFEELRRRNDSEQVAMFVTTLQQGEELGAPIVETLIQIANDMRRTDAQNARRK 253

Query: 121 ALSMEAKASAWI 132
           A     KA+  +
Sbjct: 254 AARAVPKATFAV 265


>gi|212635449|ref|YP_002311973.1| Tight adherence TadC-like transmembrane protein [Shewanella
           piezotolerans WP3]
 gi|212556933|gb|ACJ29387.1| Tight adherence TadC-like transmembrane protein, putative
           [Shewanella piezotolerans WP3]
          Length = 321

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 68/158 (43%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++ L K+R       FP+ALD++V    AGL +  A+  +  +   S   + SE   V  
Sbjct: 159 LQSLAKRRMRLLRVGFPDALDLLVVCCEAGLGLMAALQRVAKELAFSHPSLASELELVCS 218

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL++  ++        L+++   ++ IS   +LG  ++E L   S   RD++   A
Sbjct: 219 KVRAGLTIKVALQEFTERTGLEDIKGLNSAISQSMRLGTGIAETLRVFSDEYRDKRLQAA 278

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + QA  +  K    ++  +       +    P  + V+
Sbjct: 279 EEQAAKLAVKMIFPMMCCIWPS--FFIVAVGPAVLKVM 314


>gi|90020509|ref|YP_526336.1| type IV pilus biogenesis protein PilC [Saccharophagus degradans
           2-40]
 gi|89950109|gb|ABD80124.1| type II secretion system protein [Saccharophagus degradans 2-40]
          Length = 405

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/165 (10%), Positives = 52/165 (31%), Gaps = 6/165 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   ++AG+P+  +  ++   S +  +    R++ +    G   + S+ +  
Sbjct: 67  DIALFTRQMATMMKAGVPLVQSFEIVSNGSENKSLAELIRQIKDDVASGSGFAPSLRKHP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           +             +    +  G L   L  ++      + +KAK++       A   + 
Sbjct: 127 K-----YFDELFCNLVESGEQSGALETMLDRIATYKEKTEQLKAKIKKALTYPIAVLVVA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           G +   +   V        +    +     ++ +  +       +
Sbjct: 182 GIVSMILLIKVVPQFAASFSSFGAELPAFTMMVLGMSDAAQEYWL 226



 Score = 36.3 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/129 (10%), Positives = 43/129 (33%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +  +  AG+P+ DA+  + G + + V +    +V +    G  L+ +++   +     
Sbjct: 277 RTLSTTFAAGVPLIDALQSVAGATGNSVYTVAVEKVRDEVSTGTPLNVALTNTGK----- 331

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                   ++   +  G L   L  ++    +  +         +E    + +   +   
Sbjct: 332 -FPALLIQMTAIGEESGALDTMLDKVASYYEEAVDNSVDNLTALLEPLIMSVLGILVGGM 390

Query: 140 VSTLVYFTS 148
           +  +     
Sbjct: 391 MIAMYLPIF 399


>gi|156741661|ref|YP_001431790.1| type II secretion system protein [Roseiflexus castenholzii DSM
           13941]
 gi|156232989|gb|ABU57772.1| type II secretion system protein [Roseiflexus castenholzii DSM
           13941]
          Length = 311

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 1/143 (0%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P+ALD++   V AGL    A+  +  +  DP+  EF+RV+    LG    +++  M+  
Sbjct: 166 LPDALDLLCICVEAGLSFDQAMQRLTEKWEDPLSKEFKRVLSDTRLGRPRRDAMKDMIDR 225

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA-SAWIIG 134
             + +V  F   +    QLG ++   L   S  +R R+  +A+ +A     K     +  
Sbjct: 226 CGVDDVQTFIGAVIQAEQLGVSIGRILRIQSDQMRIRRRQRAEEEAHKAPIKMLFPMVFL 285

Query: 135 SLPFCVSTLVYFTSPGYMNVLIN 157
             P     ++    P  M  L  
Sbjct: 286 IFPALFIVILGPAVPRIMKSLGG 308


>gi|21223384|ref|NP_629163.1| integral membrane protein [Streptomyces coelicolor A3(2)]
 gi|8218173|emb|CAB92604.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
          Length = 300

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 61/144 (42%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I+ R        P+ LD++   V AGL    A+  +  +   P   E R  +    
Sbjct: 139 IWSAIRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVSTRYEGPWADELRITLRQMD 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+S  E+ + + R    ++V+ F T +    +LG  + + L +L++ +R      A+ +
Sbjct: 199 LGMSRREAFTELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRK 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144
           A     KA+  I   +      L+
Sbjct: 259 AARAVPKATLMITTFMVPATMILL 282


>gi|300113119|ref|YP_003759694.1| type II secretion system F domain-containing protein [Nitrosococcus
           watsonii C-113]
 gi|299539056|gb|ADJ27373.1| Type II secretion system F domain protein [Nitrosococcus watsonii
           C-113]
          Length = 406

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 53/179 (29%), Gaps = 7/179 (3%)

Query: 2   KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQ 59
           + L+ +R  K    +       +   + AG+P+  A  +I          E   ++    
Sbjct: 54  RPLLGQRKKKITPKEIAIFSRQLATMMAAGVPLVQAFEIIGRGHESASMQEMVLKIKGEV 113

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G +L+E++ +  R             +    +  G L   L  ++      + +K K+
Sbjct: 114 EGGGTLAEALKQHPRQFDP-----LFCNLVHAGEQSGTLETLLDKIAMYKEKTEAIKGKI 168

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +       A   +   +   +   V             D     LL +  + +      
Sbjct: 169 KKALFYPTAVVVVAFIITAILLIFVIPQFEALFQNFGADLPALTLLVLKLSALFQEWWW 227



 Score = 38.6 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/128 (10%), Positives = 43/128 (33%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +     AG+P+ +A+  + G + + V ++    I  +    +  ++  R  +  P   
Sbjct: 278 RTLSTMFAAGVPLVEAMVSVAGAAGNSVYTQAILRIRDEVSTGTQLQAAMRSSQLFPN-- 335

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
                  +    +  G++ + L  ++    +  +      +  +E    A +   +   V
Sbjct: 336 ---MVVQMVAIGEEAGSIDQMLGKVADFYEEEVDNAVDALSSLLEPLIMAILGVLVGGLV 392

Query: 141 STLVYFTS 148
             +     
Sbjct: 393 IAMYLPIF 400


>gi|157961842|ref|YP_001501876.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
 gi|157846842|gb|ABV87341.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
          Length = 320

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 69/158 (43%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++ L K+R  K    FP+ALD++V    AGL +  A+  +  +   S   + SE   V  
Sbjct: 158 LQSLSKRRMRKLRVGFPDALDLLVVCCEAGLGLMAAMQRVARELAFSHPSLASELELVCS 217

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL++  ++        L+++   ++ IS   +LG  ++E L   S   R+++   A
Sbjct: 218 KVRAGLTIKVALQEFTERTGLEDIKGLNSAISQSMRLGTGIAETLRVFSDEYRNKRLQAA 277

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + QA  +  K    ++  +       +    P  + V+
Sbjct: 278 EEQAAKLAVKMIFPMMCCIWPS--FFIVAVGPAVLKVM 313


>gi|284028545|ref|YP_003378476.1| type II secretion system protein [Kribbella flavida DSM 17836]
 gi|283807838|gb|ADB29677.1| type II secretion system protein [Kribbella flavida DSM 17836]
          Length = 272

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 59/185 (31%), Gaps = 9/185 (4%)

Query: 3   HLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
              + R              A D +   + AG P  DA+          V +E R     
Sbjct: 90  QRARARRLHLADQKRAQVIEACDTLAAELAAGRPPHDALEGAAE-----VCAELRPAAAA 144

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             LG  +   +         + +   +    V  + G  ++  +  L+  LR  ++++ +
Sbjct: 145 ARLGGDVPAVLQLAADTPGAESLKALAAAWQVADRSGAAVAAIVDRLAASLRAEESLRRQ 204

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +      A+ +A ++  LP   + L Y      +  L     G   L    A  + G+  
Sbjct: 205 IATNLAGARTTARLLAILPLFGTLLGYALGADPLTFLTTTIPGAACLTAGLALAITGLWW 264

Query: 179 MRLMI 183
              + 
Sbjct: 265 TERLA 269


>gi|39936745|ref|NP_949021.1| type II secretion system protein [Rhodopseudomonas palustris
           CGA009]
 gi|192292571|ref|YP_001993176.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1]
 gi|39650601|emb|CAE29124.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
 gi|192286320|gb|ACF02701.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1]
          Length = 324

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 59/148 (39%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           +K+ I+KR       FP+ALD+++  + +G+ +  A   +  +       +  EF     
Sbjct: 166 LKNAIQKRQLSIKRAFPDALDLLLICIESGMSIETAFRRVSIEIGSQSIPLAEEFTLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   +     L  V      +    + G  L ++L  +++  RD +  +A
Sbjct: 226 ELSYLQDRKQAYENLALRTGLDGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEA 285

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 286 EKKAAALPPKLTVPMIVFFLPVLFVVIL 313


>gi|308274905|emb|CBX31504.1| hypothetical protein N47_E50160 [uncultured Desulfobacterium sp.]
          Length = 391

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P+    +   + +G+ + DA+  +  +          ++ E+   G SL +++      
Sbjct: 62  LPDITRNLSMLLASGVQLMDALQSLSDEYPGFYGDLLNQIRESVSSGTSLHKALESYGYV 121

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P      +   +    +  G+L   L  ++  L  + ++KAK+++ ++     A +   
Sbjct: 122 FP-----EYYINMVQAGETSGSLDMVLVKIADFLETQASIKAKIRSATVYPLLMAGVSTL 176

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           + F + + V                   ++ VA +  +     
Sbjct: 177 ILFFLFSFVMPKIVRIFTETGGSLPFLTVVIVALSNFVSKYWW 219



 Score = 41.3 bits (95), Expect = 0.061,   Method: Composition-based stats.
 Identities = 13/130 (10%), Positives = 36/130 (27%), Gaps = 8/130 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   +  G+P+  A+ +      +              +  S+ +  +       L
Sbjct: 263 FARTMGALLGGGIPLLKALKLSAKSIGNR--------KLENSVLNSVEKVAAGQQMSSSL 314

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  GNL++ L   +    ++ N K +      E      +   +  
Sbjct: 315 PGFPPIILRLISTGEKSGNLAQTLNRAAYSYEEQFNRKIERALSLFEPIMILVMGFVVCI 374

Query: 139 CVSTLVYFTS 148
            V  ++    
Sbjct: 375 IVLAVLLPIF 384


>gi|118580924|ref|YP_902174.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
 gi|118503634|gb|ABL00117.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
          Length = 405

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/180 (10%), Positives = 47/180 (26%), Gaps = 15/180 (8%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             +           + +GLP+   + ++  Q  +    E    ++      S        
Sbjct: 64  TKELVIFTRQFATMIDSGLPLVQCLEILSSQQENKTFKEILYKVKESVESGS----TFAD 119

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 +        +    ++GG L   L  L+  +     +K +++   +       I
Sbjct: 120 ALAKHPKAFDQLFVNLVAAGEVGGILDTILQRLAAYIEKAMKLKKQIKGAMVYPLTIMSI 179

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA-----------AAFMLIGIMVMRL 181
              +   +   V  T          D      + +A              ++ G+  +  
Sbjct: 180 AVIVVGVILIFVIPTFAKMFQDFGGDLPAPTKIVIALSNFLTRYIIVIIALIYGLFWVFK 239



 Score = 40.5 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/130 (8%), Positives = 36/130 (27%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   V +G+P+ D + ++   + + +  E    +    +    + +          
Sbjct: 273 FTRTLGTMVSSGVPIMDGLEIVAKTAGNKIVEEAIYGVRQ-AISEGKTMAEPLAA----C 327

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G +   L  ++    D  +         ME     ++  ++  
Sbjct: 328 GVFPPMVVQMIGVGEATGAMDAMLNKIADFYDDEVDDAVSAMTAMMEPLLMVFLGTTVGG 387

Query: 139 CVSTLVYFTS 148
            V  +     
Sbjct: 388 LVIAMYLPIF 397


>gi|83950071|ref|ZP_00958804.1| type II/IV secretion system protein, TadC subfamily protein
           [Roseovarius nubinhibens ISM]
 gi|83837970|gb|EAP77266.1| type II/IV secretion system protein, TadC subfamily  protein
           [Roseovarius nubinhibens ISM]
          Length = 323

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 72/145 (49%), Gaps = 4/145 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHLGLSLSESISRM 72
           FP++LD+++  V AG  +  ++  +  +   S   +  E++ V +    G   +  ++ M
Sbjct: 174 FPDSLDMMLVCVEAGQSMDQSIVRVSEEIRASYPALADEYQLVAQQIKAGRDKASVLNEM 233

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS-AW 131
                +Q++S F TV+      G ++ +AL   +  +RD++ M+A+ +A  +  K +   
Sbjct: 234 GDRCGVQDISSFVTVLVQSQTFGTSVGDALRVYAAEMRDKRVMRAEEKANKIPTKMTLCT 293

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLI 156
           +  ++P  +  LV  +  G M+++ 
Sbjct: 294 MGLTVPPLLIILVGPSVLGIMDLMT 318


>gi|330811788|ref|YP_004356250.1| Type 4 fimbrial assembly protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379896|gb|AEA71246.1| Type 4 fimbrial assembly protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 405

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/175 (10%), Positives = 51/175 (29%), Gaps = 8/175 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65
           KR              +   ++AG+P+  A  +I        +R     V +    G S 
Sbjct: 61  KRIKPLDIAL--FTRQMATMLKAGVPLLQAFDIIGEGFDNPNMRKLVDEVKQEVAAGNSF 118

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           + ++ +  +             +    +  G L   L  ++      + +KAK++     
Sbjct: 119 AAALRKCPQ-----YFDELYCNLVDAGEQAGALDTLLDRVATYKEKSEALKAKIKKAMTY 173

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             A   +   +   +   V        +          ++ +  + ++     + 
Sbjct: 174 PAAVVLVAAVVTGILLVKVVPQFESVFSGFGAKLPAFTVMVIGLSEIMQQWWWVM 228


>gi|29829793|ref|NP_824427.1| hypothetical protein SAV_3251 [Streptomyces avermitilis MA-4680]
 gi|29606902|dbj|BAC70962.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 301

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 60/144 (41%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   +++R        P+ LD++   V AGL    A+  +  +   P   E R  +    
Sbjct: 140 IWQAVRERKDVIDRTLPDFLDVLAVVVSAGLGFRQALDRVAEKYEGPWADELRITLRQMD 199

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+S  ++   + +    ++V+ F + +    +LG  ++E L  L+  +R      A+ +
Sbjct: 200 MGVSRRQAFDELRKRNSSEQVAQFVSALQQGEELGSPIAETLIQLATDMRRTDAQNARRR 259

Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144
           A     KA+   +  +      L+
Sbjct: 260 AAKTIPKATMVTLVFMLPATMILI 283


>gi|15678998|ref|NP_276115.1| hypothetical protein MTH980 [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|2622079|gb|AAB85476.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 313

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 71/176 (40%), Gaps = 4/176 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           ++++R        P+ L  I   +RAG+ +  A+  +  Q   P+  E +R +    +G 
Sbjct: 91  MMERRVDAIEQSTPDFLRQIASLLRAGVGLESALEDVSRQGEGPLYDELKRAVIEIKIGR 150

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           +  E+I  M   +  + +     +I    + GG+LS+ +  ++  LR    +K + +A  
Sbjct: 151 TFDEAILSMSERLKSKNLDRTFRMILEGRRAGGSLSDVIETVAEDLRAVLALKRERKANV 210

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           M +     +   +    +  +     G+M  +         +  AA     G +++
Sbjct: 211 MMSVMFLVVAAIIAAPFALGMIMVYSGFMESVGKPNP----ILGAAKIAASGYIII 262


>gi|256832095|ref|YP_003160822.1| type II secretion system protein [Jonesia denitrificans DSM 20603]
 gi|256685626|gb|ACV08519.1| type II secretion system protein [Jonesia denitrificans DSM 20603]
          Length = 284

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 66/173 (38%), Gaps = 3/173 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           + +P+ +D ++  VRAGLP+ +AVA +  +  + +R EF              + +  + 
Sbjct: 106 EVWPDVVDHLISGVRAGLPLPEAVAHLGMRGPEQLREEFAIFGREYRATGRFDDCLITLK 165

Query: 74  RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + V     G  +   L+ L+  LR    ++ +++A        A +
Sbjct: 166 ERLADPTADRVIEALRVTRSVGGTEIGHLLSTLATFLRQDLRVRGELEARQSWTVGGARV 225

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             + P+ +  ++    P   +   N   G +L+   A    +   +M  +   
Sbjct: 226 AAAAPWLILAML-AVRPEAASA-FNTTLGGILIISGAGATALAYTIMIRIGRL 276


>gi|329118206|ref|ZP_08246916.1| 3-isopropylmalate dehydrogenase [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327465627|gb|EGF11902.1| 3-isopropylmalate dehydrogenase [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 407

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 64/185 (34%), Gaps = 8/185 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60
           K    ++     +D       +   ++AGLP+  A  ++    ++  +      V     
Sbjct: 55  KVKATRKKRITQEDITVFTRQLATMMKAGLPLMQAFEIVARGHANPSMTQLLMSVKSDVE 114

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S+  + ++  +         F   +    + GG L   L  L+      +++K KV+
Sbjct: 115 QGQSMGSAFAKHPK-----YFDRFYCNLVAAGEAGGVLENLLDKLAVYKEKTQSIKKKVK 169

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMV 178
           +      A   +   L   +   V          +  +  P    ++ ++  F+  G +V
Sbjct: 170 SALTYPIAIVVVAVVLVIVMMMFVLPAFGKVYKDMGAELPPLTQFMMTMSDFFVSYGWLV 229

Query: 179 MRLMI 183
           +  +I
Sbjct: 230 IIGLI 234



 Score = 38.9 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 43/142 (30%), Gaps = 11/142 (7%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLS 66
           R A                  AG+P+ +A+  + G S + +  E    +    + GLSL+
Sbjct: 269 RKATIAR----WARTTASLFAAGVPLVEALDSVAGASGNILYEEATLNIKSQVNQGLSLT 324

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
             +                  ++   +  G+L + L   +    +  +      +  ME 
Sbjct: 325 SGMQSTGL------FPNMVIQMASIGEESGSLDDMLNKAAEFYEEEVDTAVAQLSSLMEP 378

Query: 127 KASAWIIGSLPFCVSTLVYFTS 148
                + G +   +  +     
Sbjct: 379 IIMVVLGGIIGTILVAMYLPLF 400


>gi|83749633|ref|ZP_00946616.1| TRANSMEMBRANE TIGHT ADHERENCE TADC-RELATED PROTEIN; tadC1
           [Ralstonia solanacearum UW551]
 gi|207744163|ref|YP_002260555.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609]
 gi|83723694|gb|EAP70889.1| TRANSMEMBRANE TIGHT ADHERENCE TADC-RELATED PROTEIN; tadC1
           [Ralstonia solanacearum UW551]
 gi|206595567|emb|CAQ62494.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609]
          Length = 314

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 72/148 (48%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           ++  I++R     + FP++LD+I+  V AGL +  AV  +V +       +  E+  +  
Sbjct: 149 LRLKIRRRQRDIFEAFPDSLDLIMVCVEAGLGLDAAVLRVVEEMRTARPAMAEEYEILTL 208

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL+  +++  +     +++VS    ++    + G +++E+L   S +LR +++M A
Sbjct: 209 ELRAGLAREKALRNLAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRHMLA 268

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A  +  K    +I  +   +  ++ 
Sbjct: 269 EERAAKISTKILFPLIFCIFPSLFVVLL 296


>gi|323700365|ref|ZP_08112277.1| Type II secretion system F domain [Desulfovibrio sp. ND132]
 gi|323460297|gb|EGB16162.1| Type II secretion system F domain [Desulfovibrio desulfuricans
           ND132]
          Length = 318

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 68/158 (43%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +   I +R     D+ P+ALD++V  V +G+ +  AV  +  +       + SEF+ +  
Sbjct: 154 LSKKINRRKLAVGDELPDALDLLVVCVESGMGLDQAVDRVCQEMKNSGPIISSEFKLLTL 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +++  +   + L +++  ++++      G ++   L   S  +R +++ +A
Sbjct: 214 ELRAGKARIDALRSLAERVGLDDLNSLTSLLIQADAFGISVGRTLRVYSDAMRVKRSQRA 273

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A  M       ++  +   +   +    P  +  +
Sbjct: 274 EEKAAKMPVLLLLPLVAFILPTLFVAI--LGPAVIMSM 309


>gi|226227974|ref|YP_002762080.1| type IV pilus assembly protein PilC [Gemmatimonas aurantiaca T-27]
 gi|226091165|dbj|BAH39610.1| type IV pilus assembly protein PilC [Gemmatimonas aurantiaca T-27]
          Length = 398

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 59/171 (34%), Gaps = 6/171 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
           + D           + AGLP+  A+ ++  QS +  + +  R+V+     G ++++++ +
Sbjct: 58  MRDIVIFTRQFSTMINAGLPLVQALDILAKQSENKALSAVVRQVVFDVESGNTVADAMRK 117

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +       S   T +    + GG L   L  L+  +     +  KV+   +       
Sbjct: 118 HPKA-----FSDLYTNMVAAGEAGGILDTILNRLAIFMEKNDALVRKVKGAMIYPTVIMC 172

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + G     +   V          +  +      + +  +  L     M L+
Sbjct: 173 VAGLCVVILLWKVIPVFANMFGSVGMELPLPTQVVIGLSNFLNAYWWMLLL 223


>gi|150398546|ref|YP_001329013.1| type II secretion system protein [Sinorhizobium medicae WSM419]
 gi|150030061|gb|ABR62178.1| type II secretion system protein [Sinorhizobium medicae WSM419]
          Length = 327

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 63/148 (42%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + + I KR       +P+ALD+++  V +G+ +  A+  +  +    S P+  E      
Sbjct: 169 IANAISKRQHSIRRAWPDALDLLLICVESGVSMELAMRRVADEIAVQSQPLAEELVLTTA 228

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     ++  + R   L+EV      +    + G  +++AL  L++  RD++   A
Sbjct: 229 ELSFLPERRVALENLGRRTGLEEVKSVMQALIQADRYGTPVAQALRVLAQESRDQRMTAA 288

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 289 EKKAAALPPKLTVPMILFFLPVLVAVIL 316


>gi|329935278|ref|ZP_08285244.1| type II secretion system F protein [Streptomyces griseoaurantiacus
           M045]
 gi|329305101|gb|EGG48960.1| type II secretion system F protein [Streptomyces griseoaurantiacus
           M045]
          Length = 296

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 59/144 (40%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I+ R        P+ LD++   V AGL    A+  +  +   P   E R  +    
Sbjct: 135 IWQAIRDRKDVIDRTLPDFLDVLAVVVSAGLGFRQALDRVAERYEGPWADELRITLRQMD 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+S  ++   + R    ++V+ F + +    +LG  +++ L  L+  +R      A+ +
Sbjct: 195 MGVSRRQAFDELRRRNTSEQVAQFVSALQQGEELGSPIADTLIQLATDMRRTDAQNARRR 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144
           A     KA+   +  +      L+
Sbjct: 255 AAKTIPKATMVTLVFMLPATMILI 278


>gi|297193034|ref|ZP_06910432.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197719836|gb|EDY63744.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 278

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 61/161 (37%), Gaps = 1/161 (0%)

Query: 24  VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSF 83
              +RAGL  + A+   VG + D +     RV+     G  + E++    R    + ++ 
Sbjct: 114 AGELRAGLQPAQALLFAVGAT-DVLGDAEARVLAAARFGGDVPEALRSAARQPGAEGLAG 172

Query: 84  FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143
            +    V    G  L+  L  L   LR   + + ++ A    A ++  ++  LP     +
Sbjct: 173 VAACWRVAVDGGAGLAAGLDRLEASLRAEMDQREELAAQLAGAWSTIVLLALLPVAGLAM 232

Query: 144 VYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            +      ++VL + P G   L +       G+     ++ 
Sbjct: 233 GWALGADPLHVLFHSPAGIACLVIGGLLETAGLCWAGRIVR 273


>gi|220913395|ref|YP_002488704.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
 gi|219860273|gb|ACL40615.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
          Length = 294

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 60/145 (41%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R      +  N LD ++ SV AGL    A+A      + P+  E  R ++   
Sbjct: 136 LYSKGQERQKTMQLELANTLDQMLISVEAGLGFEGAMARAGDNGNGPLAEELVRTLQDMQ 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S  ES + +     + E+  F   +      G  +S  L   ++++R ++  +A+ +
Sbjct: 196 VGRSRRESYTALAARTSIPELRSFVQAVVQADTYGIAISRVLRVQAKVMRVKRRQRAEEK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145
           A+ +       ++  +   +   + 
Sbjct: 256 AMKLPVMILFPLLFFIFPVLFIAIL 280


>gi|39996593|ref|NP_952544.1| type IV pilus biogenesis protein PilC [Geobacter sulfurreducens
           PCA]
 gi|39983474|gb|AAR34867.1| type IV pilus biogenesis protein PilC [Geobacter sulfurreducens
           PCA]
 gi|298505609|gb|ADI84332.1| type IV pilus biogenesis protein PilC [Geobacter sulfurreducens
           KN400]
          Length = 405

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 55/168 (32%), Gaps = 6/168 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISR 71
             D           + +GLP+   + ++  Q  +        RV E+   G + ++++S+
Sbjct: 64  TKDLVVFTRQFATMIDSGLPLVQCLDILSSQQENKTFKDVLIRVKESVEGGSTFADALSK 123

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +             +    ++GG L   L  L+  +     +K +V+   +       
Sbjct: 124 HPK-----VFDQLYVNLVAAGEVGGILDTILNRLAAYIEKAMKLKKQVKGAMVYPTTIMA 178

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           I   +   +   V  T          +  G     +  +  ++  +++
Sbjct: 179 IAVIVVGVILIFVIPTFAKMFQEFGGELPGPTKFVINLSNFIVKYILL 226



 Score = 40.1 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/130 (10%), Positives = 38/130 (29%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+P+ D + ++   + + V  E    +        +SE  +        
Sbjct: 273 FTRTLGTLISSGVPIMDGLEIVAKTAGNKVVEEAVYKVRQA-----ISEGKTMAEPLQEC 327

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G +   L+ ++    D  +         ME     ++  ++  
Sbjct: 328 GVFPPMVVQMISVGEATGAMDAMLSKIADFYDDEVDEAVSAMTALMEPMLMVFLGTTVGG 387

Query: 139 CVSTLVYFTS 148
            V  +     
Sbjct: 388 LVIAMYLPIF 397


>gi|319785603|ref|YP_004145079.1| type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317171491|gb|ADV15029.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 340

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 55/148 (37%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           + +   KR       +P+ LD+++  V +G+ V  A+  +  +       +  EF     
Sbjct: 169 VNNRATKRKQSIQMAWPDGLDLMLICVESGMSVEAALRKVADEIGAQSVALAEEFILTNA 228

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   +     L  V   S  +    + G  ++ AL  L+   RD +   A
Sbjct: 229 ELSYLPERKQAYENLASRTGLDSVKSVSQALVQAERYGTPVAHALRVLAAESRDMRMNAA 288

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 289 EKKAAALPPKLTVPMILFFLPVLFAIIL 316


>gi|296134293|ref|YP_003641540.1| Type II secretion system F domain protein [Thermincola sp. JR]
 gi|296032871|gb|ADG83639.1| Type II secretion system F domain protein [Thermincola potens JR]
          Length = 304

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 67/155 (43%), Gaps = 2/155 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K     R  +  D  P+ LD++  SV AGL    A+  +V +    +  E  R+++   
Sbjct: 149 LKAKSAARQEEIQDTLPDVLDLLTVSVEAGLGFDAAMVKVVEKIKGVLSQECARMLQEVK 208

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G    +++  +     +++V  F   +    QLG ++   L   S  +R ++  +A+ +
Sbjct: 209 MGKPRRDALKDLGVRTGVEDVQSFVGAVIQADQLGVSIGNVLRVQSEQMRQKRRQRAEQK 268

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           A+    K    +I  +   +  +V    P  + VL
Sbjct: 269 AMKAPVKMLIPLIIFIFPTIFIVV--LGPAAIQVL 301


>gi|193213109|ref|YP_001999062.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327]
 gi|193086586|gb|ACF11862.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327]
          Length = 313

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 70/158 (44%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           ++ + ++R  +  +  P+ ++++V    AG+ +  A   I  +       +  EF     
Sbjct: 152 LRFITQRRIERMRNGLPDMIELMVICTEAGMSIDAASTRISREMARSYPDLSQEFYLSSL 211

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +++  M   + L+E+    +V+    + G +L+++L   S ++R R++ +A
Sbjct: 212 EMRAGATRLDALRNMALRVGLEELEDLVSVLIQADKFGTSLADSLRVHSDVMRTRRSQRA 271

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  A  +  K    +I  +   +  L+    P  + +L
Sbjct: 272 EELANKVPVKMLLPLILFIFPTL--LMVLLGPAIIQLL 307


>gi|148642531|ref|YP_001273044.1| type II secretion system protein F, GspF [Methanobrevibacter
           smithii ATCC 35061]
 gi|148551548|gb|ABQ86676.1| type II secretion system protein F, GspF [Methanobrevibacter
           smithii ATCC 35061]
          Length = 306

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 73/183 (39%), Gaps = 1/183 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             +KR A+     P+ L  +   ++ GL   +A+  +      P+  E RR I    +G 
Sbjct: 87  KQEKRAAEIEKSAPDFLRQLSAMLKVGLSFENAMEDMSKYGEGPLYDETRRAIAEIKVGR 146

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           +  ++   M + +  +E+    T+I    + G +++  + ++S  LRD   +K + ++  
Sbjct: 147 NFDDAWMAMAQRLKSKELERIFTIILGSRKSGSSIANVIFDVSNNLRDMLALKRERKSSV 206

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI-NDPRGHMLLGVAAAFMLIGIMVMRLM 182
           M A     I   +    +  +      +M                   +++I  +++ L+
Sbjct: 207 MMAVMFLIISAVIASPFALGMVSVYSQFMQSFGKQTQLILAAPFAGQIYLVIHSVLVGLI 266

Query: 183 INF 185
           ++ 
Sbjct: 267 VSI 269


>gi|110636326|ref|YP_676534.1| type II secretion system protein [Mesorhizobium sp. BNC1]
 gi|110287310|gb|ABG65369.1| type II secretion system protein [Chelativorans sp. BNC1]
          Length = 329

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 57/148 (38%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + +   KR       +P+ALD+++  V +G+ V  A   +  +    S  +  E      
Sbjct: 169 ISNQASKRKKSIQLAWPDALDLLLICVESGVSVEQAFRRVADEIGTQSVALAEELVLTTA 228

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   +     L+ V   S  +    + G  +S+AL  L+   R+ +   A
Sbjct: 229 ELSFLQERRQAYENLAARTGLESVKSVSQALIQAERYGTPISQALRVLADESREARMNAA 288

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 289 EKKAAALPPKLTVPMILFFLPVLFAIIL 316


>gi|29831150|ref|NP_825784.1| hypothetical protein SAV_4607 [Streptomyces avermitilis MA-4680]
 gi|29608264|dbj|BAC72319.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 209

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 60/162 (37%), Gaps = 1/162 (0%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   VRAG    +A+    G  S  +      V+     G  +  +++        + + 
Sbjct: 44  LAGEVRAGRQPGEALLHAAGD-SGGLGDAQAAVLAAARFGGDVPGALADAAGQPGAEGLL 102

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
                  V    G  L+  L  L   LR  ++ +A+++A    A+++A ++ +LP     
Sbjct: 103 GLGACWRVAVDRGAGLAAGLDRLEAALRAERDQRAELRAQLAGARSTAVMLAALPVLGLL 162

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           L        ++V+++   G   L   A     G+     ++ 
Sbjct: 163 LGTALGADPLHVVLHTGAGLACLLAGAVLEGAGLWWALRIVR 204


>gi|59713408|ref|YP_206183.1| bipartite nuclear localization signal containing protein [Vibrio
           fischeri ES114]
 gi|59481656|gb|AAW87295.1| bipartite nuclear localization signal containing protein [Vibrio
           fischeri ES114]
          Length = 303

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 59/159 (37%), Gaps = 4/159 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +    K    K     P  LD++   V  G+ +  +++ +  +     +     +     
Sbjct: 145 LSSRKKALEEKLSGQLPYLLDLLAMCVHTGMTIESSLSYLAKEMQGFDKDLAHMIARTND 204

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +   + L  ++  +   +P  E+  F   +      G ++ E L  L+  +R  + +  +
Sbjct: 205 RANIVGLEPALDELYVRVPTNEMRSFVMTLKQSLHYGSSIYEILNTLAADIRSVRLLSLE 264

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
            +   + AK S  +I  +   V  L+    PG M ++  
Sbjct: 265 EKVGKLAAKMSVPLILFIMIPVVILIAA--PGVMRMMTG 301


>gi|15963899|ref|NP_384252.1| hypothetical protein SMc02822 [Sinorhizobium meliloti 1021]
 gi|307320431|ref|ZP_07599848.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           AK83]
 gi|15073074|emb|CAC41533.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021]
 gi|306893997|gb|EFN24766.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           AK83]
          Length = 327

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 62/148 (41%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + + I KR       +P+ALD+++  V +G+ +  A+  +  +    S P+  E      
Sbjct: 169 IANAISKRQQSIRRAWPDALDLLLICVESGVSMELAMRRVADEIAVQSPPLAEELVLTTA 228

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     ++  +     L EV   +  +    + G  +++AL  L++  RD++   A
Sbjct: 229 ELSFLPERRIALENLGLRTGLDEVKSVTQALIQADRYGTPVAQALRVLAQESRDQRMTAA 288

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 289 EKKAAALPPKLTVPMILFFLPVLVAVIL 316


>gi|311107628|ref|YP_003980481.1| type II secretion system protein F domain-containing protein 4
           [Achromobacter xylosoxidans A8]
 gi|310762317|gb|ADP17766.1| bacterial type II secretion system protein F domain protein 4
           [Achromobacter xylosoxidans A8]
          Length = 307

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 77/184 (41%), Gaps = 1/184 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR  + +   P  LD IVR +  G  +  A       + +P+  E      +  
Sbjct: 123 LWLRADKRQRRMISQLPAFLDNIVRLLTIGNSMGAAFQTAAAATDEPL-REVVETASSLS 181

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
               L  +++++ R   L+E+   + V+S+  + GG   + L  ++  +RD    + ++ 
Sbjct: 182 RSKELDAALAQVSRLYGLKELYMVAAVVSLAMRFGGRSDQVLERMAAFMRDVAQARNELT 241

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A S E + SAWI+  LP  ++  +   +      L  DP+G  +L  A    + G   + 
Sbjct: 242 ASSAEVRLSAWILALLPVGIAGFIIVANNNLFMGLWQDPQGFRMLLTAVCLQVGGCYWLY 301

Query: 181 LMIN 184
            M  
Sbjct: 302 RMAK 305


>gi|260776710|ref|ZP_05885605.1| flp pilus assembly protein TadC [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607933|gb|EEX34198.1| flp pilus assembly protein TadC [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 314

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 76/164 (46%), Gaps = 7/164 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + HL+KKR ++     P+ALD++V    +GL  + A+  +  +   S      E   V  
Sbjct: 154 LGHLVKKRQSRIRGGIPDALDLMVVCTESGLGFNSALRRVADEVAISHPDFADELDTVCV 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
             + G+ +S++ + ++    L E++   T+++  S++GG+L++ L   +   RD++N + 
Sbjct: 214 KINAGVEMSDAFNDLIERTGLIEIAGLVTMLAHASRIGGSLAQTLREYTDDYRDKRNQEV 273

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           +  A  +  K    ++  +  C    +    P  +  L     G
Sbjct: 274 EEIAAKIPTKMIFPLLLFIWPC--FFIVAIGPSML--LFTSTLG 313


>gi|168699471|ref|ZP_02731748.1| probable secretion system protein TadC [Gemmata obscuriglobus UQM
           2246]
          Length = 307

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 62/159 (38%), Gaps = 3/159 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   I+KR     +  P+ALDI+V SV  G  ++ A+     +       + +E   V  
Sbjct: 147 LGARIEKRQRLIRNALPDALDIMVLSVEGGSSLNAALMWAADEIRDVHPVLGAELLVVQR 206

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              LGLS+ ++     R   + E    +  +    + G ++ +AL   +   R  +   A
Sbjct: 207 EVQLGLSMGDAFQGFARRCGIPEGRDLAAALIQSEKYGASVGKALRTFADSARQDRQAWA 266

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
           +  A     K    ++  +   +  ++   +   M+ L 
Sbjct: 267 EEVAQKASVKVVFPMLLCIFPAIFIVLLGPAAVQMSQLF 305


>gi|182414900|ref|YP_001819966.1| type II secretion system protein [Opitutus terrae PB90-1]
 gi|177842114|gb|ACB76366.1| type II secretion system protein [Opitutus terrae PB90-1]
          Length = 439

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 63/181 (34%), Gaps = 15/181 (8%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRM 72
                    +   VRAG+P+   + V+  Q S P   E    +  T   G SLSE++++ 
Sbjct: 98  RALALFTRQLATLVRAGMPLVRGLEVLARQESGPRFREIVNDLAATIRAGESLSEALAQH 157

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R             ++   + GG L   L  L+  L     +KA++ A          +
Sbjct: 158 PR-----VFDRLYVSMARAGEAGGVLHVVLERLAAFLEKSARLKARIAAAMTYPV---IV 209

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA-AAFMLIGIM-----VMRLMINFD 186
           +      V+ L+ F  P +  +     +G  L  +      + GI          ++   
Sbjct: 210 LALAGGIVAALMVFVVPRFEQIFSGLLKGQPLPTLTRLVLGVSGIFQHHGGWCLALVAIG 269

Query: 187 V 187
           V
Sbjct: 270 V 270


>gi|167767552|ref|ZP_02439605.1| hypothetical protein CLOSS21_02071 [Clostridium sp. SS2/1]
 gi|167710844|gb|EDS21423.1| hypothetical protein CLOSS21_02071 [Clostridium sp. SS2/1]
 gi|291558489|emb|CBL37289.1| Flp pilus assembly protein TadB [butyrate-producing bacterium
           SSC/2]
          Length = 252

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 73/190 (38%), Gaps = 5/190 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-----VRSEFRRVIE 57
           H   +   K   +F   +  I  S+ AG  + +A+               +  E + +I 
Sbjct: 63  HKGHREKEKLRKEFREMMISIGNSLSAGYSIENALKTAKNDLEMYEEHSLLAKELQLLIN 122

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +   +   +  M  ++ L+E   F+ VIS+  + GGNL E   N    L      K 
Sbjct: 123 KLKMNEPVDNLLFDMAEHVGLEEFYQFAQVISIAKKSGGNLIEITENTIEHLSQAIQTKE 182

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           ++  +    +    I+  +P+ +   V   +PGY ++L     G ++  ++   + I  +
Sbjct: 183 EIHTMIAAKQMEKKIMSVMPYFILLYVRIANPGYFDILYESFAGVLVAVISLLCLWIADI 242

Query: 178 VMRLMINFDV 187
               +   ++
Sbjct: 243 WAERVTEIEI 252


>gi|322420001|ref|YP_004199224.1| Type II secretion system F domain-containing protein [Geobacter sp.
           M18]
 gi|320126388|gb|ADW13948.1| Type II secretion system F domain protein [Geobacter sp. M18]
          Length = 407

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 49/171 (28%), Gaps = 5/171 (2%)

Query: 10  AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
            K    D           + +GLP+   + ++  Q  +    E    ++      S    
Sbjct: 62  KKIETKDLVVFTRQFATMIDSGLPLVQCLDILGSQQENKTFKEILIKVKESVESGS---- 117

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                     +        +    ++GG L   L+ L+  +     +K +V+   +    
Sbjct: 118 TFADALSKHPKAFDQLYVNLVAAGEVGGILDTILSRLAAYIEKAMKLKKQVKGAMVYPIT 177

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
              I   +   +   V  T          +        +A +  L+  +V+
Sbjct: 178 IMSIAVIVVGVILVFVIPTFAKMFADFGGELPAPTKFVIALSNFLVKYIVV 228



 Score = 37.8 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/130 (10%), Positives = 39/130 (30%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+P+ D + ++   + + +  E        ++  S+SE  +        
Sbjct: 275 FTRTLGTMISSGVPIMDGLDIVAKTAGNKIVEE-----AIYNVRQSISEGKTIAEPLAEC 329

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G +   L  ++    D  +         ME     ++  ++  
Sbjct: 330 GVFPPMVVQMISVGEATGAMDAMLNKIADFYDDEVDDAVGALTSMMEPLLMVFLGTTVGG 389

Query: 139 CVSTLVYFTS 148
            V  +     
Sbjct: 390 LVVAMYLPIF 399


>gi|28868145|ref|NP_790764.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28851382|gb|AAO54459.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 405

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/170 (11%), Positives = 53/170 (31%), Gaps = 6/170 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMV 73
           D       +   ++AG+P+  +  +I   + +P        + +    G S + ++ R  
Sbjct: 67  DIAFFSRQMATMMKAGVPLLQSFDIISEGAENPNMRTLVDSLKQEVSAGNSFATALRRKP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G L   L  ++      + +KAK++       A   + 
Sbjct: 127 E-----YFDELFCNLVDAGEQAGALESLLDRVASYKEKTEKLKAKIKKAMTYPAAVLIVA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             +   +   V             D     L+ +  + ++    ++ ++ 
Sbjct: 182 VIVSGILLIKVVPQFQSIFASFGADLPAFTLMVIGLSDIVQKWWLIIVIA 231



 Score = 38.6 bits (88), Expect = 0.47,   Method: Composition-based stats.
 Identities = 14/128 (10%), Positives = 37/128 (28%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +  +  AG+P+ +A+  + G + + V            +   +S  +           
Sbjct: 277 RTLATTFAAGVPLVEALDSVAGATGNVVFK-----NAVNRVKQDVSTGMQLNFSMRSTGV 331

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
               +  ++   +  G L   L  ++    +  +         ME    A +   +   V
Sbjct: 332 FPSLAIQMTSIGEESGALDAMLDKVATYYEEEVDNMVDNLTSLMEPMIMAILGVIVGGLV 391

Query: 141 STLVYFTS 148
             +     
Sbjct: 392 IAMYLPIF 399


>gi|119477435|ref|ZP_01617626.1| Type II secretory pathway, component PulF [marine gamma
           proteobacterium HTCC2143]
 gi|119449361|gb|EAW30600.1| Type II secretory pathway, component PulF [marine gamma
           proteobacterium HTCC2143]
          Length = 405

 Score = 75.2 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 55/174 (31%), Gaps = 8/174 (4%)

Query: 8   RTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSL 65
           R       D       +   ++AG+P+  +  ++     +   SE    V      G S 
Sbjct: 59  RKQAINPVDVAIFTRQLATMMKAGVPMVQSFDIVAEGLDNHSMSELVTEVKNEVASGTSF 118

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           ++SIS+  +             +    +  G L   L  ++      + +KAK++  +  
Sbjct: 119 AQSISKHPK-----YFDELFCNLVASGEQSGTLETMLDRIATYKEKTEALKAKIKKATTY 173

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             A   I   +   +   V  +         ++     LL V+     +    +
Sbjct: 174 PIAVLVIATIVTGILLVKVIPSFAESFANFGSELPAFTLLVVSL-SEAVQEWWL 226



 Score = 37.4 bits (85), Expect = 0.94,   Method: Composition-based stats.
 Identities = 12/137 (8%), Positives = 39/137 (28%), Gaps = 5/137 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           F          +  +  AG+P+ DA+  + G + + +          + +   ++     
Sbjct: 268 FNSIIARFSRTLSTTFAAGVPLVDALDAVSGTAGNIIY-----ANAIKRIRDDVTTGQQL 322

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
            V              +    +  G L + L  ++    +  +         +E    ++
Sbjct: 323 FVSIRATNLFPNMLLQMVSIGEQSGALDDMLEKVAIHYENEVDNAVDNLTALLEPIIMSF 382

Query: 132 IIGSLPFCVSTLVYFTS 148
           +   +   +  +     
Sbjct: 383 LGVVIGGLMIAMYLPIF 399


>gi|86748902|ref|YP_485398.1| type II secretion system protein [Rhodopseudomonas palustris HaA2]
 gi|86571930|gb|ABD06487.1| type II secretion system protein [Rhodopseudomonas palustris HaA2]
          Length = 324

 Score = 75.2 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 62/148 (41%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +K+ I KR       FP+ALD+++  + +G+ +  A   +  +    S P+  EF     
Sbjct: 166 LKNAITKRQLSIRRAFPDALDLLLICIESGMSIEAAFRKVAVEIGTQSIPLAEEFTLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   + +   L  V      +    + G  LS+++  +++  RD +  +A
Sbjct: 226 ELSYLPDRKQAYENLAKRTGLDGVKSVCLALQQSERYGTPLSQSIRVMAQENRDMRMNEA 285

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 286 EKKAAALPPKLTVPMILFFLPVLFVVIL 313


>gi|307315796|ref|ZP_07595310.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           BL225C]
 gi|306898564|gb|EFN29237.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           BL225C]
          Length = 327

 Score = 75.2 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 62/148 (41%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + + I KR       +P+ALD+++  V +G+ +  A+  +  +    S P+  E      
Sbjct: 169 IANAISKRQQSIRRAWPDALDLLLICVESGVSMELAMRRVADEIAVQSPPLAEELVLTTA 228

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     ++  +     L EV   +  +    + G  +++AL  L++  RD++   A
Sbjct: 229 ELSFLPERRIALENLGLRTGLDEVKSVTQALIQADRYGTPVAQALRVLAQESRDQRMTAA 288

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 289 EKKAAALPPKLTVPMILFFLPVLVAVIL 316


>gi|119960955|ref|YP_948379.1| type II secretion system protein F [Arthrobacter aurescens TC1]
 gi|119947814|gb|ABM06725.1| putative bacterial type II secretion system protein F domain
           [Arthrobacter aurescens TC1]
          Length = 284

 Score = 75.2 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 70/182 (38%), Gaps = 3/182 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   +KR       +P+ +D +  ++RAGL + +A+  +     + +R  F        
Sbjct: 93  VRWRARKRRNSLRQLWPDIVDHLRSAIRAGLALPEALIQLGHNGPEELRELFLDFGADYR 152

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKV 119
              +   +  ++   +           + +  +  G +L   L  LS  LRD    ++++
Sbjct: 153 AAGNFEAAADKLKERLADPVADRIIEALRMTREVGGSDLGRMLGTLSGFLRDSARTRSEL 212

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +A       +A +  + P+ V  ++  + P  M V  N   G ++L       +    VM
Sbjct: 213 EARQSWTVNAARLAVAAPWIVLVVM-ASRPEAM-VAFNSGMGALVLLGGLLISVFCYSVM 270

Query: 180 RL 181
             
Sbjct: 271 LR 272


>gi|225024579|ref|ZP_03713771.1| hypothetical protein EIKCOROL_01456 [Eikenella corrodens ATCC
           23834]
 gi|224942730|gb|EEG23939.1| hypothetical protein EIKCOROL_01456 [Eikenella corrodens ATCC
           23834]
          Length = 411

 Score = 75.2 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 62/187 (33%), Gaps = 9/187 (4%)

Query: 1   MKHLIKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIET 58
           +    K R  +    D       +   ++AGLPV  A  ++    S+  +      V   
Sbjct: 57  LHKKKKVREKRITQGDITVFTRQLATMMKAGLPVMQAFDIVAKGHSNASMTKLLMEVRND 116

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G S++ +  +  +         F   +    + GG L   L  L+        +K K
Sbjct: 117 IEQGTSMANAFRKHPK-----YFDDFYCNLVDAGEAGGVLESLLDKLAVYKEKTLAIKKK 171

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGI 176
           +++      A   +   L   +   V        + +  +       ++G++   +  G 
Sbjct: 172 IKSALTYPIAVVVVAIVLVIIMMMFVLPEFKKVYDGMNAEMPALTQFMMGISDFMVAWGW 231

Query: 177 MVMRLMI 183
           MV+  M+
Sbjct: 232 MVIIAMV 238



 Score = 40.1 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 47/156 (30%), Gaps = 19/156 (12%)

Query: 6   KKRTAKFLDDFPNA------------LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR 53
           +KR    L   P                       AG+P+ +A+  + G S + +  E  
Sbjct: 255 QKRVDAMLLKLPIFGNIVEKGTIARWARTTATLFTAGVPLVEALDSVGGASGNIIYEEAT 314

Query: 54  R-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112
           R +    + G SL+ ++S                 ++   +  G+L + L   +    + 
Sbjct: 315 RSIRNQVNQGTSLTTAMSS------TDLFPNMVLQMASIGEESGSLDDMLNKAAEFYEEE 368

Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
            +      +  ME      +   +   +  +     
Sbjct: 369 VDTAVATLSSLMEPIIMVVLGSIIGVILVAMYLPLF 404


>gi|207728101|ref|YP_002256495.1| pilus assembly protein tadc [Ralstonia solanacearum MolK2]
 gi|206591346|emb|CAQ56958.1| pilus assembly protein tadc [Ralstonia solanacearum MolK2]
          Length = 314

 Score = 75.2 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 72/148 (48%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           ++  I++R     + FP++LD+I+  V AGL +  AV  +V +       +  E+  +  
Sbjct: 149 LRLKIRRRQRDIFEAFPDSLDLIMVCVEAGLGLDAAVLRVVEEMRTARPAMAEEYEILTL 208

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL+  +++  +     +++VS    ++    + G +++E+L   S +LR +++M A
Sbjct: 209 ELRAGLAREKALRNLAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRHMLA 268

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A  +  K    +I  +   +  ++ 
Sbjct: 269 EERAAKISTKILFPLIFCIFPSLFVVLL 296


>gi|78186665|ref|YP_374708.1| TadC protein [Chlorobium luteolum DSM 273]
 gi|78166567|gb|ABB23665.1| TadC protein [Chlorobium luteolum DSM 273]
          Length = 315

 Score = 75.2 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 70/158 (44%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +  + +KR  +  D  P+ +D++V    +G+ +  A+  I  +    +  +  EF     
Sbjct: 151 LGFITRKRIGRLRDSLPDMIDLMVICTESGMGIDAAITRISKEMAGTNPDLAQEFYLSAL 210

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  E++  +     L+++    +V++   + G +L+E+L   S ++R R+  +A
Sbjct: 211 EIRAGATRIEALRNLALRSRLEDLDDLVSVLAQADRFGTSLAESLRVQSDMMRSRRTQRA 270

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  A  +  K    +I  +   +  ++    P  + V+
Sbjct: 271 EELAAKIPVKMLLPLILFIFPTL--MMVLLGPAVIQVM 306


>gi|315121886|ref|YP_004062375.1| pilus component protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495288|gb|ADR51887.1| pilus component protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 319

 Score = 75.2 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 60/159 (37%), Gaps = 4/159 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           + +L+ KR       +P+ALD+++  + +G+ V  A+  +  +       +  E      
Sbjct: 159 ISNLVTKRQDSIRRAWPDALDLLLICIESGIAVDQALRRVAEEVGGQSVALSEELLLTTA 218

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                L+   +         +  +           + G ++ ++L  L    R  + M+A
Sbjct: 219 ELSFLLNRQVAFENFYNRTQMDCIRNVMQAFIQSDRYGTSIGDSLRVLVAETRSERLMEA 278

Query: 118 KVQALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A ++  K     I+  LP  +  ++       M+ +
Sbjct: 279 EKKAAALSPKLTVPMILFFLPVLMLVIIGPAILNIMDTM 317


>gi|149917202|ref|ZP_01905702.1| type II secretion system protein [Plesiocystis pacifica SIR-1]
 gi|149822118|gb|EDM81511.1| type II secretion system protein [Plesiocystis pacifica SIR-1]
          Length = 382

 Score = 75.2 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 58/174 (33%), Gaps = 7/174 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRM 72
            D           V AGLP+   + ++  Q+ +P   E   ++      G SLSE++   
Sbjct: 42  KDLVVFTRTFSTMVDAGLPLVQCLDMLSSQAENPRFGEMLGKIKAEVETGKSLSEAMGLY 101

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +             +    + GG L      ++  L     ++ +V+   +   A   +
Sbjct: 102 PK-----VFDDLFRNLVAAGEAGGILDLIFRRMATYLEKSAKLRRQVKGALVYPVAIIVV 156

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLI-NDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              +   + T V  T       L      G   + +A +  + G  ++  ++  
Sbjct: 157 GLLVMVIMMTFVLPTFEDMFKDLGAGSLPGPTRIVLAISHFITGHFLLLTIVGI 210



 Score = 38.9 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/130 (8%), Positives = 36/130 (27%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+P+ DA+ ++   S + V          +        S        P 
Sbjct: 251 FTRTLGTLLASGVPILDAMDIVAKTSGNVVIQNGILYAREKVAEGKDIASPLLETGIFPP 310

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G + + L  ++    +  +      +  +E     ++   +  
Sbjct: 311 -----MVVQMIGVGEQTGAMDDMLQKIADFYEEEVDAAVAAMSAMLEPLILVFLGVGVGG 365

Query: 139 CVSTLVYFTS 148
            +  +     
Sbjct: 366 MLIAMYLPIF 375


>gi|303233387|ref|ZP_07320056.1| type II secretion system F domain protein [Atopobium vaginae
           PB189-T1-4]
 gi|302480516|gb|EFL43607.1| type II secretion system F domain protein [Atopobium vaginae
           PB189-T1-4]
          Length = 317

 Score = 75.2 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 73/183 (39%), Gaps = 1/183 (0%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
            +++  +  K   + P+   I+   + +G  ++ A+A +           F++       
Sbjct: 127 NYIVHAKRDKVAHEMPDVFRILGMGLSSGQTLTQAIAYVGIHKKGEAGHAFQQASLQLRC 186

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  +++ +  +   +    V F  T +++  + G  L       ++++  ++  K  ++ 
Sbjct: 187 GAGITDVLKGIAAMLHAPGVKFLVTALAISQRTGSPLRNLFRQSAKLVEQQEQFKRLLRV 246

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            + + + S  ++ SLP  +  ++   S  +   L   P G   L  AA    + + ++  
Sbjct: 247 KTAQVRLSVRVVASLPVVLICILSVLSVDFQKGLTR-PLGVGCLICAAVLNAVALFIITQ 305

Query: 182 MIN 184
           ++ 
Sbjct: 306 LMK 308


>gi|240102254|ref|YP_002958562.1| type II secretion system protein F [Thermococcus gammatolerans EJ3]
 gi|239909807|gb|ACS32698.1| Bacterial type II secretion system protein F [Thermococcus
           gammatolerans EJ3]
          Length = 358

 Score = 75.2 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 66/182 (36%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + + ++R A+     P  L  I   + AG+ +++A+  +          EF  ++     
Sbjct: 167 RMVWRRRVAEVEKALPYVLRHIASLLSAGVGIAEALVSVAKADYGVASEEFELIVRDMRA 226

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S  E++ R    M  + VS     I    + GGNL+E L  ++        MK     
Sbjct: 227 GASFEEALERFEEKMGSENVSRVVKQILRAIKFGGNLAEILYKMAEDFAFEYRMKLVEYV 286

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
             +   A  ++  ++      +V   +    +         +     A  +L    ++ L
Sbjct: 287 QKVNGIAFIYMFMTIVMPTMFIVAILAGSAFSAQGGGGTLALSPSALAVILLFAFPMLSL 346

Query: 182 MI 183
           +I
Sbjct: 347 II 348


>gi|289769409|ref|ZP_06528787.1| integral membrane protein [Streptomyces lividans TK24]
 gi|289699608|gb|EFD67037.1| integral membrane protein [Streptomyces lividans TK24]
          Length = 291

 Score = 75.2 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 60/144 (41%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I+ R        P+ LD++   V AGL    A+  +  +   P   E R  +    
Sbjct: 130 IWSAIRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVSTRYEGPWADELRITLRQMD 189

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+   E+ + + R    ++V+ F T +    +LG  + + L +L++ +R      A+ +
Sbjct: 190 LGMGRREAFTELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRK 249

Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144
           A     KA+  I   +      L+
Sbjct: 250 AARAVPKATLMITTFMVPATMILL 273


>gi|10567797|gb|AAG18588.1|AF297457_3 pilin biogenesis protein PilC [Pseudomonas fluorescens]
          Length = 383

 Score = 75.2 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/175 (10%), Positives = 51/175 (29%), Gaps = 8/175 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65
           KR              +   ++AG+P+  A  +I        +R     V +    G S 
Sbjct: 39  KRIKPLDIAL--FTRQMATMLKAGVPLLQAFDIIGEGFDNPNMRKLVDEVKQEVAAGNSF 96

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           + ++ +  +             +    +  G L   L  ++      + +KAK++     
Sbjct: 97  AAALRKCPQ-----YFDELYCNLVDAGEQAGALDTLLDRVATYKEKSEALKAKIKKAMTY 151

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             A   +   +   +   V        +          ++ +  + ++     + 
Sbjct: 152 PAAVVLVAAVVTGILLVKVVPQFESVFSGFGAKLPAFTVMVIGLSEIMQQWWWVM 206


>gi|255020083|ref|ZP_05292154.1| type II secretion system protein [Acidithiobacillus caldus ATCC
           51756]
 gi|254970445|gb|EET27936.1| type II secretion system protein [Acidithiobacillus caldus ATCC
           51756]
          Length = 337

 Score = 75.2 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 1/148 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +    K+R  + L D P  LD I   V  GL ++ A+ + V +    P+R+EFR ++   
Sbjct: 179 LVEQAKRRQKRILKDLPVYLDFITLMVEGGLNLTGAIQIAVDKGPEGPLRNEFRIILRDL 238

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G+   E   R    + +QE+    T I    + GG+L+  L   +   R+ + ++A+ 
Sbjct: 239 RSGMPRVEVFRRFGDRVAMQELRSLVTAIIQAEERGGSLAPVLKAQAEQRREERFLRAEK 298

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFT 147
            AL    K  A +I  +   V  ++ F 
Sbjct: 299 AALEAPVKLLAPLIMFIFPIVFIVLTFV 326


>gi|319944672|ref|ZP_08018939.1| 3-isopropylmalate dehydrogenase [Lautropia mirabilis ATCC 51599]
 gi|319742111|gb|EFV94531.1| 3-isopropylmalate dehydrogenase [Lautropia mirabilis ATCC 51599]
          Length = 415

 Score = 75.2 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 55/180 (30%), Gaps = 11/180 (6%)

Query: 1   MKHLIKKRTAKFL-----DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRR 54
           +  + K+R           D       +   ++AG+P+  A  ++   +    V   F  
Sbjct: 58  VTRIKKQRYKAARGKIQDKDITLFTRQLATMMKAGVPLLQAFDIVAKGTDNGAVAKLFTD 117

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           +      G +LS++  +                +    +  G L + L  L+      + 
Sbjct: 118 IKADVETGTALSQAFRKYPL-----YFDNLFCNLVGAGEQAGILDDLLDRLAMYKEKMEA 172

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +KAK+++      A   +   +   +   V             D     L  +A +   +
Sbjct: 173 IKAKIKSALFYPTAVMVVAFIVVAVIMLFVVPAFKSVFESFGADLPAPTLFVMALSDYFV 232



 Score = 40.9 bits (94), Expect = 0.075,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 46/142 (32%), Gaps = 11/142 (7%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLS 66
           R A         L  +     AG+P+ +A+  + G + + V     +++ +    G SL+
Sbjct: 278 RKATIAR----WLRTLSTMFAAGVPLVEALDSVGGAAGNIVYLQATKKIQQEVSTGTSLT 333

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +++                 ++   +  G+L   L   + +     +   +  +  ME 
Sbjct: 334 VAMNNA------NVFPNMVLQMASIGEESGSLDSMLGKSADVYEREVDDAVESLSSLMEP 387

Query: 127 KASAWIIGSLPFCVSTLVYFTS 148
                +   +   V  +     
Sbjct: 388 LIMVVLGTLIGGLVVAMYLPIF 409


>gi|297566543|ref|YP_003685515.1| Type II secretion system F domain-containing protein [Meiothermus
           silvanus DSM 9946]
 gi|296850992|gb|ADH64007.1| Type II secretion system F domain protein [Meiothermus silvanus DSM
           9946]
          Length = 408

 Score = 74.8 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 58/169 (34%), Gaps = 8/169 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72
            D       +   + AGLP+  A+A++  Q+         + V      G S SE+++R 
Sbjct: 65  KDLAIFSRQLATMLSAGLPIVQALAILEKQTEKKSFRAIIKDVRTEVEGGASFSEALARH 124

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +       +     +    +  GNL   L  LS  L     ++ K+++           
Sbjct: 125 PKL-----FNRLYMNLVRAGETSGNLDAILDRLSAFLEKDLELRGKIKSALTYPTIVFVF 179

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVM 179
              + + + T +       +  L     P    L+ V+      GI ++
Sbjct: 180 AIGVTYFLLTGIVPQFANILTSLNAQLPPLTRFLIAVSDFLKSSGIFLL 228


>gi|288939923|ref|YP_003442163.1| Type II secretion system F domain-containing protein
           [Allochromatium vinosum DSM 180]
 gi|288895295|gb|ADC61131.1| Type II secretion system F domain protein [Allochromatium vinosum
           DSM 180]
          Length = 416

 Score = 74.8 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 17/172 (9%), Positives = 53/172 (30%), Gaps = 6/172 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLS 66
           R      D       +   + AG+P+  A  ++     +  ++     + +    G ++S
Sbjct: 71  RKKITGQDLSIFTRQLATMMSAGVPLVQAFDIVGRGHENPAMQDIILAIKQDIESGTAMS 130

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++++   +            +    +  G L   L  ++      +++K K++      
Sbjct: 131 IAMAKHPLH-----FDDLVCSLVAAGEQAGVLDVLLDKIATYKEKTESIKGKIKKALFYP 185

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            A   +   +   +   V        +    D     L+ +  + ++     
Sbjct: 186 AAVIVVAVIVTVVILLFVIPQFKELFSSFGADLPAFTLMVIGLSDLIREWWW 237



 Score = 42.4 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 17/136 (12%), Positives = 46/136 (33%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRM 72
                    +     AG+P+ +A+  + G + + V +    ++ E    G SL  ++ + 
Sbjct: 281 AAIARFARTLSTMFAAGVPLVEALQSVSGATGNVVYQDAVMKMREEVATGQSLQLAMRQR 340

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +  +         ++   +  G L + L  ++    ++ +      +  +E      I
Sbjct: 341 NLFPHM------VIQMTAIGEESGALDDMLGKVADFYEEQVDNAVDSLSSLLEPMIMVVI 394

Query: 133 IGSLPFCVSTLVYFTS 148
            G +   V  +     
Sbjct: 395 GGLVGSLVVAMYLPIF 410


>gi|227872977|ref|ZP_03991276.1| Flp pilus assembly protein TadB family protein [Oribacterium sinus
           F0268]
 gi|227841193|gb|EEJ51524.1| Flp pilus assembly protein TadB family protein [Oribacterium sinus
           F0268]
          Length = 284

 Score = 74.8 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/187 (11%), Positives = 74/187 (39%), Gaps = 7/187 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIET 58
            +KR  +    F   L+ +  ++ +G+ + D++              + +  E   +I  
Sbjct: 97  KEKRLKELARQFRGFLESLAVALASGMNMHDSLDSTYKDMVMEFGEDEKITKETAEMILG 156

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
               L++ + +  + +    +++  F+ + +V  + GGN+ E +   + I+ ++  +  +
Sbjct: 157 LRNNLAIEDMMLSLGKRSANKDIENFAIIFNVSYRAGGNIKEIVRRTADIIGEKMEISEE 216

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +Q      K     +  +P  ++ ++      +     + P G + + +A        ++
Sbjct: 217 IQTAISSNKIQFTAMMIIPVVLTGMLRGMGSSFNRS-FSTPIGIVAVTIAIGIFAGAYVM 275

Query: 179 MRLMINF 185
            + ++  
Sbjct: 276 GQRIMQV 282


>gi|294102185|ref|YP_003554043.1| Type II secretion system F domain protein [Aminobacterium
           colombiense DSM 12261]
 gi|293617165|gb|ADE57319.1| Type II secretion system F domain protein [Aminobacterium
           colombiense DSM 12261]
          Length = 296

 Score = 74.8 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 74/155 (47%), Gaps = 2/155 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +  K+R  +  +  P+ +D++V SV AGL +  A++ +  +   P+   F R +    
Sbjct: 138 ITNKGKQRQVEARNQLPDVMDLMVVSVEAGLGLDAAMSRVADRLRGPMGENFARALHEIS 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S   +   ++  +P++EV  F   +    +LG  +SE L + +  L+  + +KA+  
Sbjct: 198 LGESRQAAFRGIMERLPIEEVRHFIASLIQAEELGVAVSEVLRSQAGTLKRLRRLKAEEH 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           A     K    +I  +   +  ++    P +++++
Sbjct: 258 ARKAPIKILFPMILFIFPSLFVVI--LGPAFLSIM 290


>gi|169831132|ref|YP_001717114.1| type II secretion system protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637976|gb|ACA59482.1| type II secretion system protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 417

 Score = 74.8 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72
            D       +   V+AG+P+   + V+  QS +         V      G +LSE++   
Sbjct: 78  RDLAVFCRQLATMVQAGMPLLTCLNVLGQQSDNKTLRLTAASVAMAVEAGNTLSEALRAF 137

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +  P          +    + GG L E L  L+  L    +++AKV++          +
Sbjct: 138 PKIFP-----ELFVTMVEAGETGGALEEVLERLATQLEKDADIRAKVKSAMSYPLVILAV 192

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
             +    +   V  T    +  +        LL +  +  L G  
Sbjct: 193 ALAAISIILIFVLPTFTEMLTSMNLPLPVPTLLVIGLSDFLRGYW 237



 Score = 38.2 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 11/128 (8%), Positives = 37/128 (28%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +   VR+G+P+  ++A++  + +         +     +      +          + 
Sbjct: 288 RTLSSLVRSGVPLLQSLAIV-RRIAGNQIVAEAILSAENSVKEGEGLAKP----LERSRV 342

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
                T +    +  G L   L  +++      +      +  +E     +    + F +
Sbjct: 343 FPPMVTRMIAIGEDTGALDNLLDRVAQFYEREVDATVSRLSSILEPLLMVFFGLVVGFIL 402

Query: 141 STLVYFTS 148
             +     
Sbjct: 403 LAVYLPMF 410


>gi|222445971|ref|ZP_03608486.1| hypothetical protein METSMIALI_01619 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435536|gb|EEE42701.1| hypothetical protein METSMIALI_01619 [Methanobrevibacter smithii
           DSM 2375]
          Length = 306

 Score = 74.8 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 73/183 (39%), Gaps = 1/183 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             +KR A+     P+ L  +   ++ GL   +A+  +      P+  E RR I    +G 
Sbjct: 87  KQEKRAAEIEKSAPDFLRQLSAMLKVGLSFENAMEDMSKYGEGPLYDETRRAIAEIKVGR 146

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           +  ++   M + +  +E+    T+I    + G +++  + ++S  LRD   +K + ++  
Sbjct: 147 NFDDAWMAMAQRLKSKELGRIFTIILGSRKSGSSIANVIFDVSNNLRDMLALKRERKSSV 206

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI-NDPRGHMLLGVAAAFMLIGIMVMRLM 182
           M A     I   +    +  +      +M                   +++I  +++ L+
Sbjct: 207 MMAVMFLIISAVVASPFALGMVSVYSQFMQSFGKQTQLILAAPFAGQIYLVIHSVLVGLI 266

Query: 183 INF 185
           I+ 
Sbjct: 267 ISI 269


>gi|296156494|ref|ZP_06839332.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
 gi|295893093|gb|EFG72873.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
          Length = 318

 Score = 74.8 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 68/148 (45%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           M  L++ R  K  +D P+ALD++   V AGL +  A+  +  +    S  ++ EF  V+ 
Sbjct: 150 MTRLVESRQRKLFEDLPDALDLMTVCVEAGLGLDAAMMRVTQEIGVKSHALKDEFDMVLL 209

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G    +++  +     ++++   + ++    + G ++ ++L   +  LR ++ ++A
Sbjct: 210 ELRAGSGRDKALRNLSLRTGVEDIDTLAAMLIQADRFGTSVGDSLRVYTDNLRTKRRLRA 269

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           +  A  +  K    ++  +   +  ++ 
Sbjct: 270 EELAAEIALKLLFPLMFFIFPTLLAVLV 297


>gi|90425202|ref|YP_533572.1| type II secretion system protein [Rhodopseudomonas palustris
           BisB18]
 gi|90107216|gb|ABD89253.1| type II secretion system protein [Rhodopseudomonas palustris
           BisB18]
          Length = 324

 Score = 74.8 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 58/148 (39%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           + + I KR       FP+ALD+++  V +G+ +  A   +  +       +  EF     
Sbjct: 166 LTNAISKRQLSIKRAFPDALDLLLICVESGMSIETAFRKVAIEIGSQSIPLAEEFTLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   + +   L+ V      +    + G  L ++L  +++  RD +  +A
Sbjct: 226 ELSYLQDRKVAYENLAKRTGLEGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEA 285

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 286 EKKAAALPPKLTVPMILFFLPVLFVVIL 313


>gi|302037432|ref|YP_003797754.1| pilus assembly protein TadC [Candidatus Nitrospira defluvii]
 gi|300605496|emb|CBK41829.1| Pilus assembly protein TadC [Candidatus Nitrospira defluvii]
          Length = 318

 Score = 74.8 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 68/163 (41%), Gaps = 4/163 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++  I+ R    L  FP+ALD++V  V AGL +  A+  +  +       +  E R +  
Sbjct: 154 LQRRIESRQRNILAAFPDALDLMVVCVEAGLSLDVAITRVGQELQLMHRELSEELRALYL 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S  +++      + L+EV  F  ++    + G ++ +AL   +  LR R++++A
Sbjct: 214 ELRTGRSRQQALRNAGLRIQLEEVQSFVALLVQTERFGTSVGQALRAHADGLRTRQDLQA 273

Query: 118 -KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159
            ++ A          I    P  +  L+   +   +  L    
Sbjct: 274 TEMAAKLPVKLLLPLIFFIFPSLLVVLLGPAAIQVIRQLAPTL 316


>gi|221067370|ref|ZP_03543475.1| type II secretion system protein [Comamonas testosteroni KF-1]
 gi|220712393|gb|EED67761.1| type II secretion system protein [Comamonas testosteroni KF-1]
          Length = 303

 Score = 74.8 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 72/158 (45%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           ++ +  +R  +  ++FP+A D+++  V AG+ +  A+  +  +    S+ +  E      
Sbjct: 137 LRWMAARRKREIFENFPDAADLMLVCVEAGMGLDAALGKVTAEIRIKSEALAQELHWTNL 196

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+  +     + E+  F+ +++   + G ++ +++   S  LR ++ M+A
Sbjct: 197 EMRAGSTREKSLRNLAARTGVDEIHAFTAMLTQADRFGTSIGDSIRVFSDDLRHKRQMRA 256

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  A  +  K    ++  +   +  ++    P  + +L
Sbjct: 257 EELAAKIPTKMLLPLVTCIFPAI--VMVVLGPAIIRLL 292


>gi|150377235|ref|YP_001313830.1| type II secretion system protein [Sinorhizobium medicae WSM419]
 gi|150031782|gb|ABR63897.1| type II secretion system protein [Sinorhizobium medicae WSM419]
          Length = 321

 Score = 74.8 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 64/158 (40%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + + I KR       +P ALD+++ +V +G+ +  A   +  +    S     E      
Sbjct: 164 VSNRITKRQQSIRRSWPEALDLLLITVESGMGIESAFRKVGEEIGTQSPETAEEILLTTA 223

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   + +   ++ V    T +    + G  L +AL  +++  RD +  +A
Sbjct: 224 ELSYLQDRRQAFENLGQRTGVEGVRAVVTSLIQAEKYGTPLGQALRVMAQENRDMRMSEA 283

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A ++  K +  +I      +  ++   +P  + ++
Sbjct: 284 EKKAAALPPKLTVPMILFFLPVLFAVI--ITPAVIQIM 319


>gi|117928945|ref|YP_873496.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
 gi|117649408|gb|ABK53510.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
          Length = 286

 Score = 74.8 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 72/171 (42%), Gaps = 3/171 (1%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           +P+ +D +  +VRAGL + +AVA +  +  D +R  FRR  +   +  + + S+  + R 
Sbjct: 110 WPDVVDNLASAVRAGLALPEAVAQLADRGPDELRPTFRRFADDYRVSGNFAASLDELKRR 169

Query: 76  MPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           +           + +  +  G +L   L  LS  LR+   ++A+++         A +  
Sbjct: 170 LADPTADRIIESLRMAREVGGTDLGRLLRTLSVFLREDLRIRAELETRQGWTVNGARLAV 229

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             P+ +  L     P  ++   N   G ++L V A+   +    M  +   
Sbjct: 230 LAPWLLLGL-LSLHPAAVHA-YNSAAGVVILTVGASVSAVAYRAMVRIGRL 278


>gi|144897440|emb|CAM74304.1| Flp pilus assembly protein TadC [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 199

 Score = 74.8 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 61/149 (40%), Gaps = 5/149 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSLS 66
                 FP+ALD++V  V AGL V  A+  +  +    +  +  E               
Sbjct: 49  QALARGFPDALDLMVICVEAGLSVEAALLKVTDEMANSAPELAEEIGLTAAELAFLGDRR 108

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++   +     L +V   ST +    + G  +++AL  LS+  R+ +   A+ +A S+ A
Sbjct: 109 QAWDNLAERTGLAQVKSLSTALVQSEKYGTPVAQALRVLSQENRETRMAAAEKKAASLPA 168

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           K +  +I      +  ++    P  + V+
Sbjct: 169 KLTVPMIVFFLPVLFIVI--AGPAAIQVM 195


>gi|88811822|ref|ZP_01127075.1| type II secretion system protein F [Nitrococcus mobilis Nb-231]
 gi|88790706|gb|EAR21820.1| type II secretion system protein F [Nitrococcus mobilis Nb-231]
          Length = 409

 Score = 74.8 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/174 (11%), Positives = 51/174 (29%), Gaps = 7/174 (4%)

Query: 8   RTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSL 65
           R  K    D       +   + +G+P+  A  +I     +  ++     + E    G+ L
Sbjct: 63  RKKKITPGDIAVLTRQLSTMLNSGVPLVQAFDIIGRGHENPSMQKLVLSIKEDVEAGIGL 122

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S+++ +                +    +  G L   L  ++      +++K K++     
Sbjct: 123 SDALRKHPL-----YFDELVCNLVAAGEQAGVLDTLLDKIATYKEKTESIKKKIKKALFY 177

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             A   +   +   +   V             D     +L +  +        +
Sbjct: 178 PTAVLVVAFIVTAILLIFVVPQFEELFRGFGADLPAFTVLVIQLSDAFQQYWWL 231



 Score = 44.7 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRM 72
                    +     AG+P+ DA+  + G + + V     R + E    G  L  + SR 
Sbjct: 274 AALARFARTLSTMFAAGVPLVDALESVAGATGNRVYGQAVRAMREEVTAGQPLQWAASRT 333

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +  +         +    +  G+L   LA ++    +  +      +  +E    A +
Sbjct: 334 ELFPHM------MVQMIAIGEEAGSLDAMLAKVADFYEEEVDNAIDSLSSLLEPLIMAIL 387

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V  +     
Sbjct: 388 GILVGGLVIAMYLPIF 403


>gi|227875851|ref|ZP_03993977.1| type II secretion system protein [Mobiluncus mulieris ATCC 35243]
 gi|306819132|ref|ZP_07452846.1| type II secretion system protein [Mobiluncus mulieris ATCC 35239]
 gi|307700039|ref|ZP_07637088.1| type II secretion system F domain protein [Mobiluncus mulieris
           FB024-16]
 gi|227843599|gb|EEJ53782.1| type II secretion system protein [Mobiluncus mulieris ATCC 35243]
 gi|304648108|gb|EFM45419.1| type II secretion system protein [Mobiluncus mulieris ATCC 35239]
 gi|307614800|gb|EFN94020.1| type II secretion system F domain protein [Mobiluncus mulieris
           FB024-16]
          Length = 305

 Score = 74.8 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 70/186 (37%), Gaps = 3/186 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     K        +P+ +D ++  VRAG+ + + +  +       +++ F   +   H
Sbjct: 113 LNVKRSKIQNARGKAWPHVVDNLISGVRAGMSLGETLTKVATSVPPSLQAPFAHFVLDYH 172

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKV 119
              +L  S++ +   +           + + +Q  G +L   L +L  ++R  +  +A++
Sbjct: 173 ARGNLDGSLAMLKNELADPVADRIIEALRLAAQVGGNDLVALLEDLGSMIRAEERTRAEI 232

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            A        A +    P+ +  ++   +      +   P G ++L   A   ++  ++M
Sbjct: 233 LARQSWTVTGARLAAVAPWLILAML--LAKDQTLEIYATPTGSVILTSGAVVSVVAYLLM 290

Query: 180 RLMINF 185
                 
Sbjct: 291 LRFGRL 296


>gi|269977486|ref|ZP_06184458.1| type II secretion system protein [Mobiluncus mulieris 28-1]
 gi|269934402|gb|EEZ90964.1| type II secretion system protein [Mobiluncus mulieris 28-1]
          Length = 305

 Score = 74.4 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 70/186 (37%), Gaps = 3/186 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     K        +P+ +D ++  VRAG+ + + +  +       +++ F   +   H
Sbjct: 113 LNVKRSKIQNARGKAWPHVVDNLISGVRAGMSLGETLTKVATSVPPSLQAPFAHFVLDYH 172

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKV 119
              +L  S++ +   +           + + +Q  G +L   L +L  ++R  +  +A++
Sbjct: 173 ARGNLDGSLAMLKNELADPVADRIIEALRLAAQVGGNDLVALLEDLGSMIRAEERTRAEI 232

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            A        A +    P+ +  ++   +      +   P G ++L   A   ++  ++M
Sbjct: 233 LARQSWTVTGARLAAVAPWLILAML--LAKDQTLEIYATPTGSVILTSGAVVSVVAYLLM 290

Query: 180 RLMINF 185
                 
Sbjct: 291 LRFGRL 296


>gi|332531738|ref|ZP_08407623.1| type IV fimbrial assembly protein PilC [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038714|gb|EGI75156.1| type IV fimbrial assembly protein PilC [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 408

 Score = 74.4 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 20/171 (11%), Positives = 53/171 (30%), Gaps = 6/171 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
            D       I   + AG+P+  ++ +I   S++  V      +      G +LS ++ + 
Sbjct: 69  KDIALVTRQIATMLTAGVPLIQSIEMIASGSNNKSVSKLMNAIGGDVKAGQTLSSALRKY 128

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R             +    +  G L +    ++      + +K+K++       A   +
Sbjct: 129 SR-----YFDDLYCDLVESGEQSGALDKIFDRVALYKEKSEALKSKIKKAMFYPIAVLVV 183

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
              +   +   V             +     L  ++ +  +     + L+ 
Sbjct: 184 ALIVTSILLIFVVPQFQDIFAGFGAELPAFTLFVISISNFMQAYWWVILIA 234


>gi|315231662|ref|YP_004072098.1| hypothetical protein TERMP_01900 [Thermococcus barophilus MP]
 gi|315184690|gb|ADT84875.1| hypothetical protein TERMP_01900 [Thermococcus barophilus MP]
          Length = 353

 Score = 74.4 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 68/177 (38%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K R A+     P  L  +   + AG+ +++A+  +       +  EF  +I     G S 
Sbjct: 171 KHRVAEVERAMPYVLRHLASLLSAGVGIAEAILSVANSDYGVISEEFELIIRDMRGGASF 230

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E+++R    M  + VS     +    + GGNLS  L  L+        M+       + 
Sbjct: 231 EEALTRFEERMASENVSRVVKQMLRAVKFGGNLSGILYKLAEDFSFEYRMRLVEYVQKVN 290

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
             A  ++  S+      +V   +   MN  +  P   + + +   F  +  +++ ++
Sbjct: 291 GLAFVYMFISVVMPTMLVVAVLAASIMNKRLIMPIQGLAVVLLFGFPAMAFLMVVMI 347


>gi|84489944|ref|YP_448176.1| hypothetical protein Msp_1152 [Methanosphaera stadtmanae DSM 3091]
 gi|84373263|gb|ABC57533.1| conserved hypothetical membrane-spanning protein [Methanosphaera
           stadtmanae DSM 3091]
          Length = 307

 Score = 74.4 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 72/183 (39%), Gaps = 4/183 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +  + R     +  P+ L+ I   +  GL    A+  +   S  P+ +E ++++    
Sbjct: 85  ISYNREHRKENIEEQLPDYLNQIASLLNVGLGFESALEELSKTSKGPLNNEIKQLLIETQ 144

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                +ES+  +     L  + +   +I    + GGNL+E L ++S  L++   +K + +
Sbjct: 145 FKKPFNESLMDIANRNDLDNLRYIFQIIIHTRESGGNLAEVLEDISHDLKEIILLKKQRR 204

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A  M +     I  ++    +  +      ++  +  +      L         G + ++
Sbjct: 205 ASVMMSVMLIIISSTIATPFALGMIGLYSEFIEKIGKNNP----LINTIPLASFGYITIQ 260

Query: 181 LMI 183
            ++
Sbjct: 261 SIL 263


>gi|93004899|ref|YP_579336.1| type II secretion system protein [Psychrobacter cryohalolentis K5]
 gi|92392577|gb|ABE73852.1| type II secretion system protein [Psychrobacter cryohalolentis K5]
          Length = 407

 Score = 74.4 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 17/166 (10%), Positives = 52/166 (31%), Gaps = 6/166 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   ++AG+P++ +  ++     +P ++    ++      G + + ++ R  
Sbjct: 68  DIAIFARQLATMMKAGVPLTQSFEIVADSLDNPSMKDLVLQIKADIEAGGTFASALRRHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G L   L  ++      + +KAK++       A   + 
Sbjct: 128 R-----YFDDLFCSLVDSGEQSGALETMLERVATYKEKSELLKAKIKKAMKYPIAVVVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             +   +   V        +    +      + V  +  +     +
Sbjct: 183 IIVTIILLVKVVPVFADLFSSFGAELPAFTQMVVGMSEWMQAWWFI 228


>gi|167624197|ref|YP_001674491.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
 gi|167354219|gb|ABZ76832.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
          Length = 320

 Score = 74.4 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 68/158 (43%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++ L  +R  +    FP+ALD++V    AGL +  A+  +  +   S   + SE   V  
Sbjct: 158 LQSLANRRMRQLRVGFPDALDLLVVCCEAGLGLMAAMQRVARELAFSHPSLASELDLVCS 217

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL++  ++        L+++   ++ IS   +LG  ++E L   S   RD++   A
Sbjct: 218 KVRAGLTIKVALQEFTDRTGLEDIKGLNSAISQSMRLGTGIAETLRVFSDEYRDKRLQAA 277

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + QA  +  K    ++  +       +    P  + V+
Sbjct: 278 EEQAAKLAVKMIFPMMCCIWPS--FFIVAVGPAVLKVM 313


>gi|78357408|ref|YP_388857.1| hypothetical protein Dde_2365 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219813|gb|ABB39162.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 324

 Score = 74.4 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 66/159 (41%), Gaps = 4/159 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +   ++ R     D  P+ALD++V  V AG+ +  A+  +  +   SS  +  E   ++ 
Sbjct: 162 VSSKVRTRRRLMEDSLPDALDLLVVCVEAGMGLDQAIGRVARELSLSSPVLGEELSMLVS 221

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G + SES+  +   + L++V+   T+I      G +++  L   S  +R  +  +A
Sbjct: 222 ELRAGKTRSESLKNLAHRVGLEDVNSLVTLIIQADAFGTSIAHTLRVYSDTMRTTRFQRA 281

Query: 118 KVQALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  A  M  K     +   LP     ++       M V 
Sbjct: 282 EEIAAKMPVKLLFPLVFCILPALFVAIMGPAGIRLMQVF 320


>gi|34499282|ref|NP_903497.1| fimbrial assembly transmembrane protein [Chromobacterium violaceum
           ATCC 12472]
 gi|34105133|gb|AAQ61489.1| fimbrial assembly transmembrane protein [Chromobacterium violaceum
           ATCC 12472]
          Length = 407

 Score = 74.4 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 56/182 (30%), Gaps = 11/182 (6%)

Query: 4   LIKKRTAKF-----LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIE 57
            I++R + F       D       +   +RAG+P+  A  +     S+  V      V  
Sbjct: 52  KIRRRRSGFGKKITEKDITLFTRQLSTMMRAGVPLLQAFDIAAKGHSNPAVTRMLLEVRA 111

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GLSL+E+  +                I    + GG L   L  L+        +K+
Sbjct: 112 DVETGLSLAEAFRKRPL-----YFDKLFCNIIAAGEAGGVLDTLLDKLATYKEKVMAIKS 166

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           K+++  +   A       +   +   V        +    +     L  +  +   +   
Sbjct: 167 KIKSAMIYPSAIVGTAFIITAVIMIYVIPAFKDLFSSFGANLPAPTLFVIWLSDQFVHFW 226

Query: 178 VM 179
            +
Sbjct: 227 WL 228



 Score = 39.7 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/128 (11%), Positives = 40/128 (31%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +     AG+P+ +A+  + G + + V +E  R      +   +S   S          
Sbjct: 278 RTLSTLFSAGVPLVEALDSVGGAAGNQVYAEATR-----RIQADVSTGSSLNYSMQRTDL 332

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
                  ++   +  G+L + L  ++    +  +      +  +E      +   +   V
Sbjct: 333 FPNMVLQMTSIGEESGSLDQMLDKVADFYEEEVDNAVAALSSLLEPAIMVILGILIGGLV 392

Query: 141 STLVYFTS 148
             +     
Sbjct: 393 IAMYMPIF 400


>gi|261349491|ref|ZP_05974908.1| conserved hypothetical membrane-spanning protein
           [Methanobrevibacter smithii DSM 2374]
 gi|288861855|gb|EFC94153.1| conserved hypothetical membrane-spanning protein
           [Methanobrevibacter smithii DSM 2374]
          Length = 306

 Score = 74.4 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 72/183 (39%), Gaps = 1/183 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             +KR A+     P+ L  +   ++ GL   +A+  +      P+  E RR I    +G 
Sbjct: 87  KQEKRAAEIEKSAPDFLRQLSAMLKVGLSFENAMEDMSKYGEGPLYDETRRAIAEIKVGR 146

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           +  ++     + +  +E+    T+I    + G +++  + ++S  LRD   +K + ++  
Sbjct: 147 NFDDAWMATAQRLKSKELGRIFTIILGSRKSGSSIANVIFDVSNNLRDMLALKRERKSSV 206

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI-NDPRGHMLLGVAAAFMLIGIMVMRLM 182
           M A     I   +    +  +      +M                   +++I  +++ L+
Sbjct: 207 MMAVMFLIISAVIASPFALGMVSVYSQFMQSFGKQTQLILAAPFAGQIYLVIHSVLVGLI 266

Query: 183 INF 185
           I+ 
Sbjct: 267 ISI 269


>gi|254427307|ref|ZP_05041014.1| Bacterial type II secretion system protein F domain [Alcanivorax
           sp. DG881]
 gi|196193476|gb|EDX88435.1| Bacterial type II secretion system protein F domain [Alcanivorax
           sp. DG881]
          Length = 407

 Score = 74.4 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 58/192 (30%), Gaps = 15/192 (7%)

Query: 2   KHLIKKR------TAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFR 53
           K + KKR        K    D       +   ++AG+P+  A  ++     +P ++    
Sbjct: 49  KKVAKKREINLGGKKKIKPMDIAIFTRQMATMMKAGVPLVQAFEIVADGLDNPSMKDVVL 108

Query: 54  RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
           ++      G + + ++ +                +    +  G L   L  ++      +
Sbjct: 109 KIKADVEGGNNFAGALQKHPLL-----FDDLYCSLVDAGEQSGALETMLDRVALYKEKSE 163

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA--AF 171
            +K K++       A   +   +   +   V  T     +    +        +    A 
Sbjct: 164 ALKQKIKKAMKYPIAVICVAIIVTAILLIKVVPTFKELFDGFGAELPAFTQFVIGLSEAL 223

Query: 172 MLIGIMVMRLMI 183
                ++M  +I
Sbjct: 224 QANFFIIMVSLI 235



 Score = 36.3 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 41/138 (29%), Gaps = 7/138 (5%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESIS 70
           F          +  +  AG+P+ DA+    G + + V R    +V E    G  L  ++ 
Sbjct: 270 FKSTIARYARTLSTTFAAGVPLIDALDACAGATGNVVYRKAVLQVKEDVSTGQQLQFAMR 329

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
                         +  ++   +  G L   L  ++    D  +         ME    A
Sbjct: 330 STG------VFPSMALQMTAIGEESGALDAMLEKVAIYYEDEVDNAVDGLTSMMEPLIMA 383

Query: 131 WIIGSLPFCVSTLVYFTS 148
            +   +   +  +     
Sbjct: 384 VLGVLIGGLIIAMYLPIF 401


>gi|294668186|ref|ZP_06733293.1| bacterial type II secretion system protein F domain protein
           [Neisseria elongata subsp. glycolytica ATCC 29315]
 gi|291309894|gb|EFE51137.1| bacterial type II secretion system protein F domain protein
           [Neisseria elongata subsp. glycolytica ATCC 29315]
          Length = 352

 Score = 74.4 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 63/188 (33%), Gaps = 8/188 (4%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHL 61
               ++     +D       +   ++AGLP+  A  ++     +  +      V      
Sbjct: 1   MKATRKKRITQEDITVFTRQLATMMKAGLPLMQAFEIVARGHVNPSMTQLLMAVRSDVEQ 60

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S+  + ++  +         F   +    + GG L   L  L+      +++K KV++
Sbjct: 61  GSSMGAAFAKHPK-----YFDKFYCNLISAGEAGGVLEHLLDKLAVYKEKTQSIKKKVKS 115

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVM 179
                 A   +   L   +   V          +  +  P   +++  +  F+  G +V+
Sbjct: 116 ALTYPIAIIVVAIVLVMVMMMYVLPAFGKVYADMGAELPPLTQIMMTASNFFVSYGWLVI 175

Query: 180 RLMINFDV 187
             +I   V
Sbjct: 176 IGLIAMTV 183



 Score = 36.6 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 41/141 (29%), Gaps = 9/141 (6%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R A                  AG+P+ +A+  + G +S  +  E   V     +   LS 
Sbjct: 214 RKATIAR----WARTTASLFAAGVPLVEALDSVAG-ASGNILYEEATVSIKSQVNQGLSL 268

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +       +           ++   +  G+L + L   +    +  +      +  ME  
Sbjct: 269 TSGMQSTGL----FPNMVIQMASIGEEAGSLDDMLNKAAEFYEEEVDNSVAQLSSLMEPV 324

Query: 128 ASAWIIGSLPFCVSTLVYFTS 148
               + G +   +  +     
Sbjct: 325 IMVVLGGIIGVILVAMYLPLF 345


>gi|323137430|ref|ZP_08072508.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242]
 gi|322397417|gb|EFX99940.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242]
          Length = 323

 Score = 74.4 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 66/158 (41%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + + I  R       FP+ALD+++  V +G+ +  A   +  +    S P+  EF     
Sbjct: 164 ISNTITNRQTSMRRAFPDALDLMLICVESGMSIEHAFRKVGSEIGVQSIPLAEEFALATA 223

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +     L+ V   STV+    + G  L +AL   ++  RD + M+A
Sbjct: 224 ELSYLPDRRTAYLNLAARTGLESVKQISTVLIQAEKYGTPLGQALRITAQESRDMRMMEA 283

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A ++  K +  +I      +  +V   SP  + V+
Sbjct: 284 EKKAAALPPKLTVPMIVFFLPVL--MVVVLSPAAIQVM 319


>gi|254173151|ref|ZP_04879824.1| Bacterial type II secretion system protein F domain [Thermococcus
           sp. AM4]
 gi|214032560|gb|EEB73389.1| Bacterial type II secretion system protein F domain [Thermococcus
           sp. AM4]
          Length = 358

 Score = 74.4 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 64/178 (35%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R A+     P  L  I   + AG+ +++A+  +          EF  ++     G S 
Sbjct: 171 RRRVAEVEKALPYVLRHIASLLSAGVGIAEALVSVAKADYGVASEEFELIVRDMRAGASF 230

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E++ R    M  + VS     I    + GGNL+E L  ++        MK       + 
Sbjct: 231 EEALERFEEKMGSESVSRVVKQILRAIKFGGNLAEILYKMAEDFAFEYRMKLVEYVQKVN 290

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             A  ++  ++      +V   +    +         +     A  +L    ++ L+I
Sbjct: 291 GIAFIYMFMTIVMPTMFIVAILAGSAFSAQGGGGNLALSPSALAVILLFAFPMLSLII 348


>gi|71064644|ref|YP_263371.1| pilin secretion/fimbrial assembly system protein, PilC
           [Psychrobacter arcticus 273-4]
 gi|71037629|gb|AAZ17937.1| pilin secretion/fimbrial assembly system protein, PilC
           [Psychrobacter arcticus 273-4]
          Length = 407

 Score = 74.4 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 18/166 (10%), Positives = 52/166 (31%), Gaps = 6/166 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   ++AG+P++ +  ++     +P ++    ++      G + + ++ R  
Sbjct: 68  DIAIFARQLATMMKAGVPLTQSFEIVADSLDNPSMKDLVLQIKADIEAGGNFASALRRHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G L   L  ++      + +KAK++       A   + 
Sbjct: 128 R-----YFDDLFCSLVDSGEQSGALETMLERVATYKEKSELLKAKIKKAMKYPIAVVVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             +   +   V             +      + V+ +  +     M
Sbjct: 183 IIVTIILLVKVVPVFADLFGSFGAELPAFTQMVVSMSEWMQAWWFM 228


>gi|242399929|ref|YP_002995354.1| Bacterial type II secretion system protein F domain protein
           [Thermococcus sibiricus MM 739]
 gi|242266323|gb|ACS91005.1| Bacterial type II secretion system protein F domain protein
           [Thermococcus sibiricus MM 739]
          Length = 353

 Score = 74.0 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 74/182 (40%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   + R  +     P  L  +   + AG+ +++A+  +      P+  EF  +I   H
Sbjct: 166 LRFAWRGRVVEVEKALPYVLRHMASLLSAGVGIAEAMVSVANADYGPISEEFELMIRDMH 225

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S  ++++R    M  + VS     I   ++ GGNL++ L  L+        MK    
Sbjct: 226 GGTSFEDALTRFEERMASENVSRVVKQILRATRFGGNLADILYKLAEDFSFEYRMKLVEY 285

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
              +   A  ++  ++      +V   +   M+  +  P   + + +  AF  I  MV+ 
Sbjct: 286 IQKVNGIAFVYMFITIIMPTLFVVAILAASMMSRTVVMPPSALAVILLFAFPAISSMVVF 345

Query: 181 LM 182
           ++
Sbjct: 346 MI 347


>gi|169838373|ref|ZP_02871561.1| type IV pilus assembly protein [candidate division TM7 single-cell
           isolate TM7a]
          Length = 245

 Score = 74.0 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 57/171 (33%), Gaps = 9/171 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISR 71
            D+       +   + AG+P++ ++  +   + +PV  +    V      G+SL++++ +
Sbjct: 65  QDELSIFTRQLSTMINAGVPLTRSLNSLQEHTENPVFRDTLDSVKGDVESGVSLADALGK 124

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +       S     +    +  G L E L  L+        ++ K+++          
Sbjct: 125 HPK-----VFSDIYVNMVRAGEAAGILDEVLNRLAVQQEKSATIRKKIKSAMTYPVVLVV 179

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG---VAAAFMLIGIMVM 179
           I     F +   V       +  L        L+    +  +  +I    +
Sbjct: 180 ISVLAFFGLMIFVIPKIGQIIIDLGGPDAELPLITKIMLGISNFIISFWYI 230


>gi|227823976|ref|YP_002827949.1| components of type IV pilus TadC [Sinorhizobium fredii NGR234]
 gi|227342978|gb|ACP27196.1| components of type IV pilus TadC [Sinorhizobium fredii NGR234]
          Length = 327

 Score = 74.0 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 61/148 (41%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + + I KR       +P+ALD+++  V +G+ +  A+  +  +    S  +  E      
Sbjct: 169 IANAISKRQHSIRRAWPDALDLLLICVESGVSMELAMRRVADEIAAQSSALAEELVLTTA 228

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     ++  +     L+EV      +    + G  +++AL  L++  RD++   A
Sbjct: 229 ELSFLPDRRIALENLGLRSGLEEVKAVMQALIQADRYGTPIAQALRVLAQESRDQRMTAA 288

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 289 EKKAAALPPKLTVPMILFFLPVLVAVIL 316


>gi|327539548|gb|EGF26158.1| Flp pilus assembly protein TadC [Rhodopirellula baltica WH47]
          Length = 311

 Score = 74.0 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 60/148 (40%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +K  ++K         P+ LD++V  + AGL + +++  +  +          E   V  
Sbjct: 150 LKRAVRKYHQMLRAALPDFLDLMVVCLDAGLSLQESIKQVGEELRWIHPAFTHEIDLVQH 209

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              LG  + ++I R         +   S++I    + G N+SE+L+  + +LR ++   A
Sbjct: 210 DIDLGSPVDKAIRRFADRSGYDALRTLSSLIREGQRFGTNVSESLSGHADMLRFQREQAA 269

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           +  A     K     +  +   +  ++ 
Sbjct: 270 EENAQKASVKIILPTMLFIFPAIFIVLV 297


>gi|325266599|ref|ZP_08133276.1| type IV pilin biogenesis protein PilC [Kingella denitrificans ATCC
           33394]
 gi|324982042|gb|EGC17677.1| type IV pilin biogenesis protein PilC [Kingella denitrificans ATCC
           33394]
          Length = 427

 Score = 74.0 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 64/187 (34%), Gaps = 9/187 (4%)

Query: 1   MKHLIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIET 58
           +  +   R  K            +   ++AGLP+  A  ++    S+  V      +   
Sbjct: 71  LNKMKSAREKKITQQDITVFTRQLSTMMKAGLPLMQAFDIVAKGHSNAAVTRLLTEIRND 130

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G SL  S S+  +         F   +    + GG L   L  L+      + +K K
Sbjct: 131 VEQGESLGTSFSKHPK-----YFDKFYCNLVAAGEAGGVLEGLLDKLALYKEKTQAIKKK 185

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGI 176
           V++      A   +   L   +   V        + +  +  P    ++ ++ AF+  G 
Sbjct: 186 VKSALTYPIAIVVVAVVLVIVMMMFVLPEFGKVYSSMGAELPPLTQFMMNISNAFVAYGW 245

Query: 177 MVMRLMI 183
           +++  +I
Sbjct: 246 LIILGLI 252


>gi|296122064|ref|YP_003629842.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
 gi|296014404|gb|ADG67643.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
          Length = 426

 Score = 74.0 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 63/160 (39%), Gaps = 3/160 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR--RVIET 58
           +++  + R  +     P+ LD++   V  G+ V  ++  I  +      +  +  ++I  
Sbjct: 234 VRNKARDRRNEIEKAMPDLLDMLNMCVSQGMTVPASLERIRVEMKGAYPALEQELKIINE 293

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           Q    S+  ++    + + + EV  F++++   S++G ++S AL   +  +R+    +A+
Sbjct: 294 QSRIGSMDVALKNFSQRVDVPEVHSFTSLLMQTSRMGTSVSGALTEYAETMRESLKQRAE 353

Query: 119 VQALSM-EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
            +            ++  +P     L+             
Sbjct: 354 EKGNRATFRLLFPTVLCLMPAVYLFLMGPAIIELSRFFYE 393


>gi|149178503|ref|ZP_01857091.1| type II secretion system protein [Planctomyces maris DSM 8797]
 gi|148842618|gb|EDL56993.1| type II secretion system protein [Planctomyces maris DSM 8797]
          Length = 334

 Score = 74.0 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 71/156 (45%), Gaps = 4/156 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIET 58
           +++   +R  +     P+ALD+++  +  G+P+  A+  +  +   S P  +    +I  
Sbjct: 142 LQNQANRRVHRIQRGLPDALDLVMMCLTGGVPLRTALERVTDEVRFSHPDIAVEFEIIRR 201

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
                S+++++ +  + +   +V+  S +IS   +LG N+S AL + +  +R +   +A+
Sbjct: 202 HADANSMADALKQFAKRIDAPDVNALSLMISQTERLGTNVSTALIDFADGVRRKYRQRAE 261

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
             +     K    II  +   +   + F  P  + +
Sbjct: 262 ENSSKTSIKLLFPIIFCMAPPI--YILFFGPAVLEL 295


>gi|116671481|ref|YP_832414.1| type II secretion system protein [Arthrobacter sp. FB24]
 gi|116611590|gb|ABK04314.1| type II secretion system protein [Arthrobacter sp. FB24]
          Length = 294

 Score = 74.0 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 55/138 (39%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R      +  N LD ++ SV AGL    A+A        P+  E  R ++   +G S  E
Sbjct: 143 RQKAMQLELANTLDQMLISVEAGLGFEGAMARAGENGKGPLAEEIIRTLQDMQVGRSRRE 202

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           S   +     + E+  F   I      G  +S  L   ++++R ++  +A+ +A+ +   
Sbjct: 203 SYLALAERTNIPELRSFVQAIVQADTYGIAISRVLRIQAKVMRVKRRQRAEEKAMKLPVM 262

Query: 128 ASAWIIGSLPFCVSTLVY 145
               ++  +   +   + 
Sbjct: 263 ILFPLLFFIFPVLFIAIL 280


>gi|315446284|ref|YP_004079163.1| Flp pilus assembly protein TadB [Mycobacterium sp. Spyr1]
 gi|315264587|gb|ADU01329.1| Flp pilus assembly protein TadB [Mycobacterium sp. Spyr1]
          Length = 261

 Score = 74.0 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 1/170 (0%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
              +ALD++V  +R G     A+ V   ++   +      V     LG  +   +    R
Sbjct: 87  ALQDALDVLVGELRVGAHPVAAITVAGHEARGRIAESLNAVAARALLGADVPAGLRAEGR 146

Query: 75  YMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
             P        +    +    G  ++  +    R + +R+  + +V++    A+A+A I+
Sbjct: 147 RSPSPGHWDRLAVCWQLAQTHGLAIAALMRAAQRDITERERFRGRVESGMAGARATAVIL 206

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             LP     L +      +  L++   G  LL V   F+  G++    + 
Sbjct: 207 AGLPVLGVLLGHAIGAEPLAFLLSGGAGGWLLLVGTVFVCAGLLWSDRIT 256


>gi|157283960|ref|YP_001468228.1| type II secretion system protein [Kineococcus radiotolerans
           SRS30216]
 gi|151363102|gb|ABS06104.1| type II secretion system protein [Kineococcus radiotolerans
           SRS30216]
          Length = 348

 Score = 74.0 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 19/184 (10%), Positives = 69/184 (37%), Gaps = 2/184 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             + R  + L+   + ++ +  ++  G  + +A+      ++  +      +++      
Sbjct: 91  RSQARQIRKLEALASWVESLRDTISTGQALPEALPASALTAAPEIAEPLANLLDRMRARQ 150

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           SL +++  +   +   E       +++     G  L+  L +L+   R +  ++ +++A 
Sbjct: 151 SLDQALLLLADDLDDPEADSVIGALAMNARVQGKRLNVVLTSLAESARKQLTIRREIEAG 210

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
               +     +      +   +   +  Y+    +   G ++L +       G+  +R +
Sbjct: 211 RASMRRGVTFVIITTCTLVIGMTVFNRDYVEP-YSTVTGQIVLAIVIGLFTAGLFWLRRL 269

Query: 183 INFD 186
            +F+
Sbjct: 270 ADFE 273


>gi|54309665|ref|YP_130685.1| Flp pilus assembly protein TadC [Photobacterium profundum SS9]
 gi|46914103|emb|CAG20883.1| hypothetical Flp pilus assembly protein TadC [Photobacterium
           profundum SS9]
          Length = 283

 Score = 74.0 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 62/156 (39%), Gaps = 4/156 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI--ET 58
           +    K    K     P  LD++   V+ G+ +  A+  +  +     R     +     
Sbjct: 124 LSMRKKALILKTSRQLPYMLDMMSVCVQTGMTIEAALTYLSTELEAFDRDLCFHIKKTAD 183

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
                 L +++  +   +P  +V  F+  +    Q G +++  L+ L+  +R  + +  +
Sbjct: 184 SARVKGLEKALIELSERIPTPDVRSFTLTLIQNLQYGTSIANVLSALAEDMRKMQVLTME 243

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
            +   + AK S  +I  + F +  L+   +PG M +
Sbjct: 244 EKIGKLAAKMSVPLILLIMFPIVILI--LAPGMMQM 277


>gi|149174204|ref|ZP_01852832.1| type IV fimbrial assembly protein PilC [Planctomyces maris DSM
           8797]
 gi|148847184|gb|EDL61519.1| type IV fimbrial assembly protein PilC [Planctomyces maris DSM
           8797]
          Length = 420

 Score = 74.0 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 59/165 (35%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                    +     AGLP+  ++ ++       P+++    VIE    G +LSE++++ 
Sbjct: 81  KQLCTFTRQLSTLQDAGLPILRSLRILEAQAKPGPLKASLDGVIEDIESGNTLSEAMAKQ 140

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +             +    + GG L   L  L+      +++K KVQ   +   A   +
Sbjct: 141 PKC-----FDNLYVNMVKAGEAGGALEVILQRLAEFKERAQSLKKKVQGAMIYPVAVITV 195

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
            G +   +   +             +  G  LL ++ + +++   
Sbjct: 196 AGLIVGFIMYWIIPKFKKIFLDFGTELPGITLLLMSISDIVVSYF 240



 Score = 34.7 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 14/128 (10%), Positives = 35/128 (27%), Gaps = 5/128 (3%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
              +   + +G+P+ +A+ +    + + V       I              +  R     
Sbjct: 290 CRTLGTLIASGVPILEAIIIARDTAGNMVFQRAFDTIYAAIREGETMAVPLKEARI---- 345

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
            V      +    +  G L   L  ++ +  +   +        +E      +   + F 
Sbjct: 346 -VDDIVVNMVDVGEETGALDNMLYKVADVYDEEVAVLVDALVSLLEPLMVIVLGLIVGFI 404

Query: 140 VSTLVYFT 147
           V  L    
Sbjct: 405 VIALFMPL 412


>gi|115525754|ref|YP_782665.1| type II secretion system protein [Rhodopseudomonas palustris
           BisA53]
 gi|115519701|gb|ABJ07685.1| type II secretion system protein [Rhodopseudomonas palustris
           BisA53]
          Length = 324

 Score = 74.0 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 60/148 (40%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + + I KR       FP+ALD+++  V +G+ +  A   +  +    S P+  EF     
Sbjct: 166 LTNAISKRQLSIKRAFPDALDLLLICVESGMSIEVAFRKVSVEIGTQSIPLAEEFTLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   + +   L+ V      +    + G  L ++L  +++  RD +  +A
Sbjct: 226 ELSYLQDRKVAYENLAKRTGLEGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEA 285

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 286 EKKAAALPPKLTVPMILFFLPVLFVVIL 313


>gi|330872527|gb|EGH06676.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 405

 Score = 74.0 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/172 (11%), Positives = 54/172 (31%), Gaps = 7/172 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73
           D       +   ++AG+P+  +  +I   + +P        + +    G S + ++ +  
Sbjct: 67  DIAFFSRQMATMMKAGVPLLQSFDIISEGAENPNMRALVNSLKQEVSAGNSFATALRQKP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G L   L  ++      + +KAK++       A   + 
Sbjct: 127 E-----YFDDLFCNLVDAGEQAGALESLLDRVASYKEKTEKLKAKIKKAMTYPAAVVVVA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             +   +   V             +  G  L+ +     ++    + +++ F
Sbjct: 182 VIVSGILLIKVVPQFQSVFAGFGAELPGFTLMVIGL-SEVVQKWWLAIVVAF 232



 Score = 39.7 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 41/129 (31%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +  +  AG+P+ +A+  + G + + V      +V +    G+ L+ S+          
Sbjct: 277 RTLATTFAAGVPLVEALDSVAGATGNVVFRNAVNKVKQDVSTGMQLNFSMRATG------ 330

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +  ++   +  G L   L  ++    D  +         ME      +   +   
Sbjct: 331 VFPSLAIQMTAIGEESGALDNMLDKVATYYEDEVDNMVDSLTSLMEPMIMGVLGVIVGGL 390

Query: 140 VSTLVYFTS 148
           V  +     
Sbjct: 391 VIAMYLPIF 399


>gi|86739493|ref|YP_479893.1| type II secretion system protein [Frankia sp. CcI3]
 gi|86566355|gb|ABD10164.1| type II secretion system protein [Frankia sp. CcI3]
          Length = 296

 Score = 74.0 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 70/173 (40%), Gaps = 3/173 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           + +P+ +D +  +VRAG+ + + +A +  +    +R  F R  E      S S  + R+ 
Sbjct: 107 ELWPDVVDNLSSAVRAGMSLPEGLAAVGVRGPVQLRPAFTRFGEDYSATGSFSACLDRLA 166

Query: 74  RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + +  +  G +L   L  LS  LR+    +A+++        +A +
Sbjct: 167 DELADPVADRIIESLRMAREVGGTDLGRLLRTLSTFLREDARTRAELETRQSWTVNAARL 226

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             + P+ V  L+            + P G ++L V  A   +  ++M+ +   
Sbjct: 227 ALAAPWIVLLLLATRGQNVRA--YDSPTGVLVLVVGGAVSALAYLLMKRIGRL 277


>gi|83647943|ref|YP_436378.1| type II secretory pathway subunit PulF [Hahella chejuensis KCTC
           2396]
 gi|83635986|gb|ABC31953.1| Type II secretory pathway, component PulF [Hahella chejuensis KCTC
           2396]
          Length = 406

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 58/181 (32%), Gaps = 9/181 (4%)

Query: 7   KRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLS 64
           KRT K    D       +   ++AG+P+  +  ++        ++     +      G S
Sbjct: 59  KRTKKITPFDIAVFTRQMATMMKAGVPLVQSFDIVADGLEHPSLKELVLDIKNEVAAGNS 118

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
            + ++ +  +             +    +  G L   LA ++  L   + +K KV+    
Sbjct: 119 FAGALKKHPK-----YFDDLFCNLIDSGEKSGALETMLARVATYLEKTEILKKKVKKAMT 173

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLM 182
              A   +   +   +   V             D      M++ ++        +++ ++
Sbjct: 174 YPIAVLVVAVIVTGILLVKVVPQFQDLFQGFGADLPAFTQMIINISEYLQASWYIILGVI 233

Query: 183 I 183
           I
Sbjct: 234 I 234



 Score = 39.3 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 41/131 (31%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
              ++  +  AG+P+ DA+  + G + +   R    ++ +    G  L  S+        
Sbjct: 276 FARVLSTTFAAGVPLVDALESVAGATGNAVFRKAVIKIRDDVSSGTQLQYSMKTTG---- 331

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +  ++   +  G L + L  ++       +         ME    A +   + 
Sbjct: 332 --VFPVMAIQLTSIGEESGALDDMLEKVADHYEAEVDDAVDNLTALMEPMIMAVLGVLVG 389

Query: 138 FCVSTLVYFTS 148
             +  +     
Sbjct: 390 GLIIGMYLPIF 400


>gi|254381954|ref|ZP_04997317.1| integral membrane protein [Streptomyces sp. Mg1]
 gi|194340862|gb|EDX21828.1| integral membrane protein [Streptomyces sp. Mg1]
          Length = 297

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 59/145 (40%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I+ R        P+ LD++   V AGL    A+  +  +   P   E R  ++   
Sbjct: 135 LWSAIRIRRDHIERTLPDFLDVLAVVVSAGLGFRPALERVADKYEGPWSDEIRITLQQMT 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+S  ++   + R    ++V+ F T +    +LG  + E L  L+  +R      A+ +
Sbjct: 195 MGVSRRQAFDELRRRNDSEQVAQFVTALQQGEELGSPIVETLIALAEDMRRTDAQNARRR 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145
           A     KA+  +   +      L+ 
Sbjct: 255 AARAVPKATFAVTTFMLPGTLILLV 279


>gi|32471258|ref|NP_864251.1| integral membrane protein [Rhodopirellula baltica SH 1]
 gi|32396960|emb|CAD71930.1| probable integral membrane protein [Rhodopirellula baltica SH 1]
          Length = 313

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 60/148 (40%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +K  ++K         P+ LD++V  + AGL + +++  +  +          E   V  
Sbjct: 152 LKRAVRKYHQMLRAALPDFLDLMVVCLDAGLSLQESIKQVGEELRWIHPAFTHEIDLVQH 211

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              LG  + ++I R         +   S++I    + G N+SE+L+  + +LR ++   A
Sbjct: 212 DIDLGSPVDKAIRRFADRSGYDALRTLSSLIREGQRFGTNVSESLSGHADMLRFQREQAA 271

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           +  A     K     +  +   +  ++ 
Sbjct: 272 EENAQKASVKIILPTMLFIFPAIFIVLV 299


>gi|197335643|ref|YP_002155274.1| bipartite nuclear localization signal containing protein [Vibrio
           fischeri MJ11]
 gi|197317133|gb|ACH66580.1| bipartite nuclear localization signal containing protein [Vibrio
           fischeri MJ11]
          Length = 290

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 70/159 (44%), Gaps = 4/159 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV--IET 58
           ++  IK R  +     P  LD++   V+ G+ V  +++ +  +     +   + +  +  
Sbjct: 133 LQAKIKARIHRVSTQMPYLLDLMAVCVQTGMTVEASLSYLAKEMKGFNKDLTQVLTKMNE 192

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +   + L +S+  M   +P  E+  F   ++     G ++   L  L+  +R+ + ++ +
Sbjct: 193 RSRMVGLEKSLEEMYVEIPSNEMRSFVMTLTQSMHYGSSIYSVLTTLASDIREVQMLELE 252

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
            +   + AK S  +I  +   +  L+    PG M +++N
Sbjct: 253 ERIGKLAAKMSVPLIVFIMIPIVILIAA--PGVMRLMLN 289


>gi|302536567|ref|ZP_07288909.1| integral membrane protein [Streptomyces sp. C]
 gi|302445462|gb|EFL17278.1| integral membrane protein [Streptomyces sp. C]
          Length = 292

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 60/145 (41%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I+ R        P+ LD++   V AGL    A+  + G+   P   E R  ++   
Sbjct: 130 LWSAIRIRRDNIERTLPDFLDVLAVVVSAGLGFRQALERVAGKYEGPWADEIRITLQQMD 189

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+S  ++   + R    ++V+ F T +    +LG  + E L  ++  +R      A+ +
Sbjct: 190 MGVSRRQAFDELRRRNDSEQVAQFVTALQQGEELGSPIVETLIAIAEDMRRTDAQNARRR 249

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145
           A     KA+  +   +      L+ 
Sbjct: 250 AARAVPKATFAVTMFMLPGTLILLV 274


>gi|260439393|ref|ZP_05793209.1| conserved hypothetical protein [Butyrivibrio crossotus DSM 2876]
 gi|292808189|gb|EFF67394.1| conserved hypothetical protein [Butyrivibrio crossotus DSM 2876]
          Length = 261

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 84/191 (43%), Gaps = 7/191 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRVI 56
           +++K R  +    F + +  +  S+ AG  + ++    + Q        D     F++++
Sbjct: 72  YIVKCREKQI-ASFKDGIRFVNNSMHAGYSIENSFKEALIQMEQVYGKDDDTYKGFKKIV 130

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
               L + + ++  +       +E+  F+ ++    + GGN+S  + N + I+ ++ ++K
Sbjct: 131 GRIMLNIPIEQAFYQYAVESGTEEILDFAEILKFAKRSGGNMSHIINNTANIITEKISLK 190

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            ++  +    K    I+ ++P  +   +  +S G +  L  +  G +++ V     +I +
Sbjct: 191 QEISTVIAGKKFEQMILSAVPAGIILYMRVSSFGTIEKLYGNMFGIIVMSVCLFIYIISV 250

Query: 177 MVMRLMINFDV 187
           ++   + +  +
Sbjct: 251 IIASRISSIKI 261


>gi|319786265|ref|YP_004145740.1| type II secretion system F domain [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464777|gb|ADV26509.1| Type II secretion system F domain [Pseudoxanthomonas suwonensis
           11-1]
          Length = 419

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 56/168 (33%), Gaps = 6/168 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +++G+P+  A+ +I G   +  +R+    +      G SL E+ISR 
Sbjct: 80  KDIAFFSRQMATMMKSGVPIVGALEIIAGGHKNPRMRNMIDTIRTDIEGGSSLYEAISRH 139

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L  ++    + +++K K++        +  +
Sbjct: 140 PVQ-----FDELYRNLVRAGESAGVLETVLDTIATYKENIESLKGKIKKALFYPAMTIAV 194

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
              +   +   V             D      + VAA+  ++    + 
Sbjct: 195 AIIVSAILLIFVIPQFEEVFQGFGADLPAFTKMIVAASNFMVSYWWIM 242



 Score = 38.6 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/137 (10%), Positives = 43/137 (31%), Gaps = 7/137 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISR 71
                        + RAG+P+ +A+  + G + + V      R+ +   +G  ++ ++ +
Sbjct: 283 NSAIARFARTTAVTFRAGVPLVEALESVAGATGNSVYEKAVLRIRDDVAVGYPMNLAMKQ 342

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              +  +         ++   +  G L   L  ++       N      +  +E      
Sbjct: 343 TNLFPHM------VIQMAAIGEEAGALDTMLQKVAEYYEQEVNNAVDALSSLIEPLIMVI 396

Query: 132 IIGSLPFCVSTLVYFTS 148
           +   +   V  +     
Sbjct: 397 LGVLVGGMVIGMYLPIF 413


>gi|194335919|ref|YP_002017713.1| type II secretion system protein [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194308396|gb|ACF43096.1| type II secretion system protein [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 316

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 67/164 (40%), Gaps = 4/164 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           ++ + + R  +  +  P+ LD++V    +G+ +  A+A I  +    +  +  EF     
Sbjct: 152 LRFITQNRIERMRNSLPDMLDLMVVCTESGMGIDAAIARISREMVRTNPDLAEEFYLSTL 211

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +++  +     L ++    +V+    + G +L ++L   S ++R  +  +A
Sbjct: 212 EMRAGANRIDALRNLALRSRLDDLQNLVSVLVQADRFGTSLVDSLRVHSDMMRTCRTQRA 271

Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
           +  A  +  K +   ++   P  +  L+       + +    P 
Sbjct: 272 EELAAKIPVKMTLPLVLFIFPVLMLVLLGPAIIQVIQIFSQKPL 315


>gi|114800177|ref|YP_759874.1| putative Flp pilus assembly protein TadC [Hyphomonas neptunium ATCC
           15444]
 gi|114740351|gb|ABI78476.1| putative Flp pilus assembly protein TadC [Hyphomonas neptunium ATCC
           15444]
          Length = 310

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 67/160 (41%), Gaps = 5/160 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +   I +R       FP+ +D++V  V AGL +  +V  +  +       +    R +  
Sbjct: 151 LDMRISQRKQACSSGFPDMMDLMVACVEAGLSLDASVQRVGEELELRHPIIAGHMRTLSL 210

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S   +       + + E    +T++    ++G +L + L   S  +R R+ + A
Sbjct: 211 ELRAGKSRKMAWRAFAERLGIDEAGSLATMLRQAEEMGTSLGQTLRVFSADMRQRRILMA 270

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + +A+++ AK +  +I  +   +  ++    P  + ++  
Sbjct: 271 EEKAMALPAKMTLPLIIFVFPVLLGVLIL--PAVVMLMTT 308


>gi|320101695|ref|YP_004177286.1| type II secretion system F domain-containing protein [Isosphaera
           pallida ATCC 43644]
 gi|319748977|gb|ADV60737.1| Type II secretion system F domain protein [Isosphaera pallida ATCC
           43644]
          Length = 318

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 59/148 (39%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           + +L  +R  +     P+ALD++V  V AGL +  A   I  +       +  EF     
Sbjct: 157 LGYLKSRRQEQIFLTLPDALDLMVVCVEAGLGLDAAFNRIASELQTAAPVLCEEFAIANF 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G    E +  +     + ++   + V+    + G +++ AL   S  +R ++   A
Sbjct: 217 QIRMGRPRREVLRDLGVRTGVADLRALAAVLIQAERFGSSIASALRVQSDSMRIKRRQIA 276

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A     K    ++  +   +  ++ 
Sbjct: 277 EEKAAKTAVKLLFPLVLFIFPGIFVVLV 304


>gi|218710398|ref|YP_002418019.1| Flp pilus assembly protein TadC [Vibrio splendidus LGP32]
 gi|218323417|emb|CAV19594.1| Flp pilus assembly protein TadC [Vibrio splendidus LGP32]
          Length = 323

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 71/155 (45%), Gaps = 5/155 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  L K+R  K  +  P+ALD++V    +GL  + A+  +  +       +  E   V  
Sbjct: 158 LSKLQKERQKKIRNGVPDALDLLVVCTESGLGFNAALGRVASELYVSQPELADELETVFA 217

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+++ +++ + +    L E+    +++S  S++GG+L++ L + +   RD++   A
Sbjct: 218 KIQAGVTMPDALRQFIDRTGLVELEGLVSLLSHASRMGGSLAQTLRDYTVDFRDKRQQAA 277

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
           +  A  +  K    ++  +  C    +    PG +
Sbjct: 278 EEIAAKIPTKMLFPMLLFIWPC--FFIVALGPGII 310


>gi|308234326|ref|ZP_07665063.1| Type II secretion system F domain protein [Atopobium vaginae DSM
           15829]
          Length = 314

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 78/182 (42%), Gaps = 1/182 (0%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L + +      D P+   ++  ++ AG   S A+A +           F++       G
Sbjct: 128 RLEQLQKTTLCHDMPDIFRMLGMALAAGQTFSQAIAYVGQHQPGEAGKAFQKASLKLRCG 187

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S+SE ++ M   +    V F  T + +  + G  L       ++++  ++  K  +   
Sbjct: 188 SSISEVLNDMAHTLQAPGVKFLITALFISQRTGAPLKSLFRQSAQLVEQQEKFKKLLSVK 247

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + +A+ S  ++ SLP  + +++   S  +   +   P G + LG+AA    I +M++R +
Sbjct: 248 TAQARLSIRVVSSLPLVLISVLSCISLDFQKGITR-PAGLISLGIAAFLDFIALMIIRSL 306

Query: 183 IN 184
           + 
Sbjct: 307 LK 308


>gi|192359121|ref|YP_001983190.1| type IV pilus biogenesis protein PilC [Cellvibrio japonicus
           Ueda107]
 gi|190685286|gb|ACE82964.1| type IV pilus biogenesis protein PilC [Cellvibrio japonicus
           Ueda107]
          Length = 428

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/170 (11%), Positives = 49/170 (28%), Gaps = 6/170 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72
            D       +   ++AG+P+  A  ++     +P        + +    G   + S+ + 
Sbjct: 89  ADIAVFSRQMATMMKAGVPLVQAFDIVADGLENPNMKSLVLEIRDDVAAGGGFAASLRKH 148

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R             +    +  G L   L  ++      + +KAK++       A   +
Sbjct: 149 PR-----YFDDLFCNLVDAGEQSGALETMLDRIATYKEKTEALKAKIKKAMTYPIAVIVV 203

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
              +   +   V             D     L  +  + +      + ++
Sbjct: 204 AIVVTGILLVKVVPQFAATFASFGADLPAFTLFVLHLSDLAQQWWFLGMI 253



 Score = 37.8 bits (86), Expect = 0.80,   Method: Composition-based stats.
 Identities = 15/133 (11%), Positives = 38/133 (28%), Gaps = 5/133 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                  +  +  AG+P+ DA+  + G + + + S+    +           +  R    
Sbjct: 295 MARFARTLSTTFAAGVPLIDALTSVAGAAGNRIYSDAILKVREDVSTGIQLNAALRSGNL 354

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +S   +  G L E L  ++       +         +E    + +   
Sbjct: 355 FP-----TLLVQMSAIGEESGALDEMLDKVAIYYEGEVDNMVDNLTSLLEPMIISVLGIL 409

Query: 136 LPFCVSTLVYFTS 148
           +   +  +     
Sbjct: 410 VGGLMVAMYLPIF 422


>gi|315127772|ref|YP_004069775.1| type IV pilus biogenesis protein C [Pseudoalteromonas sp. SM9913]
 gi|315016286|gb|ADT69624.1| type IV pilus biogenesis protein C [Pseudoalteromonas sp. SM9913]
          Length = 409

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 55/171 (32%), Gaps = 6/171 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       I   + AG+P+  ++ +I  G ++  V      + +    GL LS  + + 
Sbjct: 70  KDIALVTRQIATMLMAGVPLIQSIEMIGSGSTNKSVSKLMSAIGDEVKAGLPLSNVLRKY 129

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R             +    +  G L +    ++      + +K+K++       +   +
Sbjct: 130 PR-----YFDELYCDLVASGEQSGALDKIFDRVALYKEKSEALKSKIKKAMFYPISVLVV 184

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            G +   +   V        N    +     L  +A +  +     M ++ 
Sbjct: 185 AGIVTSILLIFVVPQFQEIFNGFGAELPAFTLFVIAISEFMQSYWWMIVLA 235



 Score = 34.7 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 40/129 (31%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +  +  AG+P+ DA+    G S + V       +      G  ++ ++         +
Sbjct: 281 RTLSTTFAAGVPLVDALDSAAGASGNAVYRYAILEIKAEVSSGNQMNWAMRN------SK 334

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                   +    +  G+L   LA ++ I     +      +  +E    A +   +   
Sbjct: 335 IFPDMVVQMVAIGEESGSLDGMLAKVATIYEQEVDDAVDGLSSLLEPLIMAVLGVLVGGL 394

Query: 140 VSTLVYFTS 148
           +  +     
Sbjct: 395 IVAMYLPIF 403


>gi|253700257|ref|YP_003021446.1| type II secretion system protein [Geobacter sp. M21]
 gi|251775107|gb|ACT17688.1| type II secretion system protein [Geobacter sp. M21]
          Length = 406

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 61/178 (34%), Gaps = 9/178 (5%)

Query: 10  AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSE 67
            K    D           + +GLP+   + ++ GQ  +    E   +V E+   G + ++
Sbjct: 61  KKIETKDLVVFTRQFATMIDSGLPLVQCLDILSGQQENKTFKEILVKVKESVESGSTFAD 120

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +++R  +             +    ++GG L   LA L+  +     +K +V+   +   
Sbjct: 121 ALARHPKA-----FDQLYVNLVAAGEVGGILDTILARLAAYIEKAMKLKKQVKGAMVYPI 175

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
               I   +   +   V  T          +      + +A +  L   +V+  +I  
Sbjct: 176 TIMSIAVIVVGVILVFVIPTFAKMFADFGGELPMPTKIVIAMSDFLTKYLVV--IIAI 231



 Score = 38.2 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 11/130 (8%), Positives = 34/130 (26%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+P+ D + ++   + + +  E    +                    P 
Sbjct: 274 FTRTLGTMISSGVPIMDGLEIVAKTAGNKIVEEAIYKVRQSISEGKTIAEPLAESGVFPP 333

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G +   L  ++    D  +         ME     ++  ++  
Sbjct: 334 -----MVVQMISVGEATGAMDAMLNKIADFYDDEVDDAVGAMTSMMEPLLMVFLGTTVGG 388

Query: 139 CVSTLVYFTS 148
            V  +     
Sbjct: 389 LVIAMYLPIF 398


>gi|289626922|ref|ZP_06459876.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330867360|gb|EGH02069.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 405

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/165 (10%), Positives = 51/165 (30%), Gaps = 6/165 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMV 73
           D       +   ++AG+P+  +  +I   + +P        + +    G S + ++ R  
Sbjct: 67  DIAFFSRQMATMMKAGVPLLQSFDIISEGAENPNMRSLVESLKQEVSAGNSFATALRRKP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G L   L  ++      + +KAK++       A   + 
Sbjct: 127 E-----YFDELFCNLVDAGEQAGALESLLDRVASYKEKTEKLKAKIKKAMTYPAAVLIVA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             +   +   V        +    +     L+ +  + ++    +
Sbjct: 182 IIVSGILLIKVVPQFQSIFSSFGAELPAFTLMVIGLSDIVQKWWL 226



 Score = 38.6 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 43/129 (33%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +  +  AG+P+ +A+  + G + + V     ++V +    G+ L+ S+          
Sbjct: 277 RTLSTTFAAGVPLVEALDSVAGATGNVVFKNAVQKVKQDVSTGMQLNFSMRSTG------ 330

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +  ++   +  G L   L  ++    D  +         ME    A +   +   
Sbjct: 331 VFPTLAIQMTAIGEESGALDTMLDKVATYYEDEVDNMVDNLTSLMEPMIMAVLGVIVGGL 390

Query: 140 VSTLVYFTS 148
           V  +     
Sbjct: 391 VIAMYLPIF 399


>gi|86147189|ref|ZP_01065505.1| bipartite nuclear localization signal containing protein, TadC-like
           protein [Vibrio sp. MED222]
 gi|85835073|gb|EAQ53215.1| bipartite nuclear localization signal containing protein, TadC-like
           protein [Vibrio sp. MED222]
          Length = 301

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 67/159 (42%), Gaps = 4/159 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR--VIET 58
           +  + K R  +     P  +D++   V+ G+ +  ++  +  +     +       V   
Sbjct: 144 LSSMAKNRQRRISRQMPYLIDLMAICVQTGMTIEASMKYLSIEMKSFDKELSSLLEVTNQ 203

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +   + +  ++  + R +P  EV  F   ++   Q G ++   L  L+  +R+ + ++ +
Sbjct: 204 RARLVGMENALEELYRKVPSPEVRSFVMTLTQSIQHGSSIYNVLTTLAGDIREVQMLELE 263

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
            +   + AK S  +I  +   +  ++    PG M +++N
Sbjct: 264 EEIGKLAAKMSIPLIVFILIPIVFVIAA--PGVMRMMLN 300


>gi|253687073|ref|YP_003016263.1| type II secretion system protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753651|gb|ACT11727.1| type II secretion system protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 319

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +K     R  K     P+ALD++V    AGLP+   + V+  +   SS  +  E      
Sbjct: 159 LKWRAASRGEKLARAVPDALDLMVVCAEAGLPIGRVLQVVSKELGLSSPEMADELHYTAA 218

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +    + ++  +     + E+      +    + G  LS+AL  ++   R    +  
Sbjct: 219 ELQILSDRTLAMKHLAERTRVSEIESMVATLIQAERYGTPLSQALRTIADESRKTLILSL 278

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +A  + A+ S  ++  +   +  ++
Sbjct: 279 EEKAGKLPAQLSVPLMALILPPIIAIM 305


>gi|218708112|ref|YP_002415733.1| putative bacterial type II secretion system protein [Vibrio
           splendidus LGP32]
 gi|218321131|emb|CAV17081.1| putative bacterial type II secretion system protein, TadC-like
           protein [Vibrio splendidus LGP32]
          Length = 301

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 67/159 (42%), Gaps = 4/159 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR--VIET 58
           +  + K R  +     P  +D++   V+ G+ +  ++  +  +     +       V   
Sbjct: 144 LSSMAKNRQRRISRQMPYLIDLMAICVQTGMTIEASMKYLSIEMKSFDKELSSLLEVTNQ 203

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +   + +  ++  + R +P  EV  F   ++   Q G ++   L  L+  +R+ + ++ +
Sbjct: 204 RARLVGMENALEELYRKVPSPEVRSFVMTLTQSIQHGSSIYNVLTTLAGDIREVQMLELE 263

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
            +   + AK S  +I  +   +  ++    PG M +++N
Sbjct: 264 EEIGKLAAKMSIPLIVFILIPIVFVIAA--PGVMRMMLN 300


>gi|145221977|ref|YP_001132655.1| type II secretion system protein [Mycobacterium gilvum PYR-GCK]
 gi|145214463|gb|ABP43867.1| type II secretion system protein [Mycobacterium gilvum PYR-GCK]
          Length = 261

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 64/171 (37%), Gaps = 1/171 (0%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
               +ALD++V  +R G     A+ V   ++   +      V     LG  +   +    
Sbjct: 86  AALQDALDVLVGELRVGAHPVAAITVAGHEARGRIAESLNAVAARALLGADVPAGLRAEG 145

Query: 74  RYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           R  P        +    +    G  ++  +    R + +R+  + +V++    A+A+A I
Sbjct: 146 RRSPSPGHWDRLAVCWQLAQTHGLAIAALMRAAQRDITERERFRGRVESGMAGARATAVI 205

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           +  LP     L +      +  L++   G  LL V   F+  G++    + 
Sbjct: 206 LAGLPVLGVLLGHAIGAEPLAFLLSGGAGGWLLLVGTVFVCAGLLWSDRIT 256


>gi|322369440|ref|ZP_08044005.1| type II secretion system protein [Haladaptatus paucihalophilus
           DX253]
 gi|320551172|gb|EFW92821.1| type II secretion system protein [Haladaptatus paucihalophilus
           DX253]
          Length = 699

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/155 (10%), Positives = 54/155 (34%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   ++R        P+ LD +     AG+ V ++V  +       +  E  R+     
Sbjct: 465 VQWAYRRRVKAIEAAVPDMLDRLASLNEAGMTVVESVRRVTNSDLGALNDELERMSRDIE 524

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G   + ++ R+   +    V+   ++++      G++   L   +   ++ + ++ + +
Sbjct: 525 WGTDAATALRRVEDRIDTPTVTRVVSLVTNAMHASGDIGRVLRIAADDAQESRRLQRQRE 584

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                     ++   +   +   +       +  L
Sbjct: 585 DEMKTYLIIIYLSFFVFLVIIGALSAILVPALQDL 619



 Score = 42.0 bits (97), Expect = 0.035,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 54/180 (30%), Gaps = 3/180 (1%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIET 58
            +    R  K        +       R+G+ +   +  +        +        V   
Sbjct: 160 SYRGNARARKIDGSLSRTVAFTYALSRSGMGMPAIMRTLARNRDVYGEAAAEVGVGVKAM 219

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              GL +  +I +M R  P ++   F   ++   Q G +L   L+      +     + +
Sbjct: 220 DLFGLDVLTAIKQMSRQSPSEKFEDFGENLASVLQSGQSLPTYLSEQYERYQRDAKAEQE 279

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                +   A  ++   +   +  +      G M V       +++  +      +G +V
Sbjct: 280 AFLELLSVLAEGYVSLFVVGPLLLITILVIMGLMGVADTLDFLYLMAYLLIPLGNVGFVV 339


>gi|328943878|ref|ZP_08241343.1| hypothetical protein HMPREF0091_10568 [Atopobium vaginae DSM 15829]
 gi|327491847|gb|EGF23621.1| hypothetical protein HMPREF0091_10568 [Atopobium vaginae DSM 15829]
          Length = 296

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 78/182 (42%), Gaps = 1/182 (0%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L + +      D P+   ++  ++ AG   S A+A +           F++       G
Sbjct: 110 RLEQLQKTTLCHDMPDIFRMLGMALAAGQTFSQAIAYVGQHQPGEAGKAFQKASLKLRCG 169

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S+SE ++ M   +    V F  T + +  + G  L       ++++  ++  K  +   
Sbjct: 170 SSISEVLNDMAHTLQAPGVKFLITALFISQRTGAPLKSLFRQSAQLVEQQEKFKKLLSVK 229

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + +A+ S  ++ SLP  + +++   S  +   +   P G + LG+AA    I +M++R +
Sbjct: 230 TAQARLSIRVVSSLPLVLISVLSCISLDFQKGITR-PAGLISLGIAAFLDFIALMIIRSL 288

Query: 183 IN 184
           + 
Sbjct: 289 LK 290


>gi|289770834|ref|ZP_06530212.1| integral membrane protein [Streptomyces lividans TK24]
 gi|289701033|gb|EFD68462.1| integral membrane protein [Streptomyces lividans TK24]
          Length = 311

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 5/183 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +   ++R    +         +   VRAG    +A+      S+  +      V+     
Sbjct: 128 RRAKERRQDAVIA----LCGTLAGEVRAGRQPGEALLCAAQDSAG-LGEAQAAVLAAARF 182

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  +  +++        + +   +    V    G  L+  L  L   LR  ++ ++ ++A
Sbjct: 183 GGDVPGALALAAGQPGAEGLRGLAACWRVAVDQGAGLAAGLDRLEGALRAERDQRSDLRA 242

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
               A+A+A ++  LP     L        ++VL++   G   L        +G+  +  
Sbjct: 243 QLAGARATAVMLAGLPVLGLLLGVALGSDPLHVLLHTGAGVGCLLAGGVLESLGVWWVTR 302

Query: 182 MIN 184
           ++ 
Sbjct: 303 IVR 305


>gi|283852078|ref|ZP_06369352.1| type II secretion system protein [Desulfovibrio sp. FW1012B]
 gi|283572468|gb|EFC20454.1| type II secretion system protein [Desulfovibrio sp. FW1012B]
          Length = 317

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 67/158 (42%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   +KKR        P+ALD++V  V AG+ +  A+  +  +       + SE R +  
Sbjct: 154 LDARVKKRQKAIQRGLPDALDLLVVCVEAGMGLDAAIYRVCVEMASKEPVLSSELRLLTL 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S  E++  +   + L+++     ++      G ++++ L   +  +R ++   A
Sbjct: 214 ELRAGKSRREALKNLSSRIGLEDMGSLVAMLIQTDMFGTSIAQTLRVYADSMRTKRFQLA 273

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  A  +  K    +I  +   +  ++    P  ++++
Sbjct: 274 EELAAKLPVKLLFPLIFFIFPTLLIVI--LGPAVISLM 309


>gi|283769336|ref|ZP_06342235.1| type II secretion system F domain protein [Bulleidia extructa
           W1219]
 gi|283103993|gb|EFC05377.1| type II secretion system F domain protein [Bulleidia extructa
           W1219]
          Length = 313

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 63/158 (39%), Gaps = 1/158 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   + +R        P  LD++   V AGL    A+  +  +    +  EF+ V     
Sbjct: 156 LASRVTRRQNLLEKQLPGFLDLLSVCVEAGLGFDQAIQYVCHEYKGELSDEFKVVQRDIS 215

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +  +++  + + +   +++ F+  +    ++G +L   L   SR +R     K + +
Sbjct: 216 LGSTRKQALMSLCQRVTSSQMTTFTAAVLQADEMGISLKNILNAQSRNVRLAYKNKIEEK 275

Query: 121 ALSMEAKA-SAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           A  +  K     +I   P     L+    PG M  L +
Sbjct: 276 AQKLSTKILIPMLIFIFPVIFIILLGPAVPGIMKALGS 313


>gi|257484001|ref|ZP_05638042.1| type II secretion system protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 405

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/180 (10%), Positives = 50/180 (27%), Gaps = 18/180 (10%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMV 73
           D       +   ++AG+P+  +  +I   + +P        + +    G S + ++ +  
Sbjct: 67  DIAFFSRQMATMMKAGVPLLQSFDIISEGAENPNMRTLVGSLKQEVSAGNSFATALRQKP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G L   L  ++      + +KAK++       A   + 
Sbjct: 127 E-----YFDDLFCNLVDAGEQAGALESLLDRVASYKEKTEKLKAKIKKAMTYPIAVLIVA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA------------AFMLIGIMVMRL 181
             +   +   V             D     L+ +                +  G  + + 
Sbjct: 182 IIVSGILLIKVVPQFQSVFAGFGADLPAFTLMVIGLSKIVQEWWLLIVGLLFAGFFLFKR 241



 Score = 38.9 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 43/129 (33%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +  +  AG+P+ +A+  + G + + V      +V +    G+ L+ S+          
Sbjct: 277 RTLATTFAAGVPLVEALDSVAGATGNVVFKNAVNKVKQDVSTGMQLNFSMRSTG------ 330

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +  ++   +  G L   L  ++    D  +         ME    A++   +   
Sbjct: 331 VFPSLAIQMTAIGEESGALDTMLDKVATYYEDEVDNMVDNLTSLMEPMIMAFLGVIVGGL 390

Query: 140 VSTLVYFTS 148
           V  +     
Sbjct: 391 VIAMYLPIF 399


>gi|283779212|ref|YP_003369967.1| type II secretion system protein [Pirellula staleyi DSM 6068]
 gi|283437665|gb|ADB16107.1| type II secretion system protein [Pirellula staleyi DSM 6068]
          Length = 329

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 61/146 (41%), Gaps = 3/146 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQ 59
            L +KR        P+ALD++V  V AGL +  A+  +  +       +  EF       
Sbjct: 165 WLGRKRKESIFLGLPDALDLMVVCVEAGLGLDQAMRKVSEEMRKSYRVIAEEFSLCNLQL 224

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            +G   ++ +  +     + ++   S+++    + G ++++AL   S  +R R+   A+ 
Sbjct: 225 QMGRGRTQVLQELGSRSGVDDLKSLSSILIQADKFGSSIAQALRVQSDAMRTRRRQIAEE 284

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVY 145
           +A     K    ++  +   +  ++ 
Sbjct: 285 KAAKTAVKLIFPLVLFIFPGIFVVLV 310


>gi|229816458|ref|ZP_04446759.1| hypothetical protein COLINT_03512 [Collinsella intestinalis DSM
           13280]
 gi|229808000|gb|EEP43801.1| hypothetical protein COLINT_03512 [Collinsella intestinalis DSM
           13280]
          Length = 247

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 81/179 (45%), Gaps = 1/179 (0%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +K+  +       A   +  S+ +GL ++ A+  +   + +PVR+EF R       G  +
Sbjct: 67  RKKRERLEGAMVEAFGALAASMASGLSLAQAMRYVGSHAQEPVRTEFLRAEAQVACGAGM 126

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           +E++  +V  +    + F +  + V  + G  LS+ L   +R++R+R  ++ K+   + +
Sbjct: 127 TEALDELVERLHAPGLDFVTLALKVSRRTGAPLSDVLGEATRLVRERVELRRKLDVRTAQ 186

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            + SA ++  +P  +   +   S  +   +     G   + VA     I   ++++++ 
Sbjct: 187 VRMSARLVAGMPVAMVAFLAAASSDFREGI-ATVPGAASIAVALLLDGIAWSIIKVVMR 244


>gi|225158976|ref|ZP_03725287.1| type II secretion system protein [Opitutaceae bacterium TAV2]
 gi|224802417|gb|EEG20678.1| type II secretion system protein [Opitutaceae bacterium TAV2]
          Length = 440

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 62/201 (30%), Gaps = 32/201 (15%)

Query: 6   KKRTAKF-------LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIE 57
           KK+   F                 +   + AG+P+  ++  +  Q  +         V E
Sbjct: 84  KKKKQAFVIGKIINQKGLTLFTRQLATLINAGMPILRSLETLARQEKNIPFKNVVEDVAE 143

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
           T   G + S+ + +  +             +    + GG L   L  L++ +     +K 
Sbjct: 144 TIRSGGTFSDGLLQNPK-----VFDRLYVNMVKAGEAGGVLGTVLDRLAKFMEKAMKIKG 198

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL------------ 165
           KV++          I+      VS L+ F  P +  +     +G  L             
Sbjct: 199 KVKSAMTYPI---IILFVAVAIVSALMVFVIPKFQEIFDGLLKGQPLPDITRLVLGVSNF 255

Query: 166 ----GVAAAFMLIGIMVMRLM 182
                +    ++IG  +   M
Sbjct: 256 VKDHFIITLILVIGGWIGFKM 276



 Score = 38.9 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/129 (9%), Positives = 36/129 (27%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+P+  A+ +    S +   +     +  +              R  P 
Sbjct: 309 FTRTLGTLLSSGVPILQALLITRDTSGNVHVANALNAVHDRVKEGDSVGKPLEATRIFP- 367

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                  + +    +  G L + L  ++ +  D  +         +E     ++   +  
Sbjct: 368 ----TMVSSMVEVGEETGALPDMLNRIADVYDDEVDNAVASVTSIIEPVMIVFLAVIVGT 423

Query: 139 CVSTLVYFT 147
            V  +    
Sbjct: 424 IVIAMFMPL 432


>gi|73542915|ref|YP_297435.1| general secretion pathway protein F [Ralstonia eutropha JMP134]
 gi|72120328|gb|AAZ62591.1| General secretion pathway protein F [Ralstonia eutropha JMP134]
          Length = 405

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/178 (11%), Positives = 56/178 (31%), Gaps = 8/178 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
             L  +R +            +   + +GLP+ +A+  +  Q+    V      +     
Sbjct: 56  SQLFTRRLSTQEQAL--FTRQLASLIVSGLPLDEALGALADQAERPYVHELLAGIRAEVM 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SLS ++++  R     +       +    +  G+L   L  L+  +  R  + +K++
Sbjct: 114 GGSSLSVALAQHPR-----DFPDIYRALVSAGEHSGHLGLVLERLAGYIESRNALTSKIR 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                      +  ++   + + V                   ++ +A +  +     
Sbjct: 169 LAFTYPAIVTVVAFAIVIFLLSYVVPQVVSVFANTKQKLPTLTIVMLALSDFVRNWWW 226


>gi|297571777|ref|YP_003697551.1| type II secretion system protein F [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296932124|gb|ADH92932.1| Type II secretion system F domain protein [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 270

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 70/175 (40%), Gaps = 3/175 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           D +P+ LD +V S+RAGL VS ++A++  +  + +R  F R          +  ++  + 
Sbjct: 84  DAWPDVLDDVVASLRAGLSVSQSLAMVGERGPELMREPFSRCATMIRAQGRMGPALDELK 143

Query: 74  RYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                         + +     G +L+  LA L+ ++R+    + ++ A        A +
Sbjct: 144 AEFADPMADRVLEAMRLSHELGGRDLATMLARLAAVIREDNRARGELLARQSWTVNGARM 203

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
             + P+ +  L   T PG +    + P G  +L        +  + M  +    V
Sbjct: 204 AAAAPWALLGLFS-TRPGTVEA-FSSPAGIAVLCGGVIVTALAYVAMIKLGQLTV 256


>gi|293604635|ref|ZP_06687037.1| type II secretion system protein F domain protein [Achromobacter
           piechaudii ATCC 43553]
 gi|292816966|gb|EFF76045.1| type II secretion system protein F domain protein [Achromobacter
           piechaudii ATCC 43553]
          Length = 236

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 57/147 (38%), Gaps = 1/147 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +  L +KR      D P   D++   V AGL V  A+           +R    + +   
Sbjct: 79  LHGLSEKRRRSIERDLPFVFDMMTLCVEAGLSVQGALQQAAQSGPKGALRDALAQALAEM 138

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G++  ++I  +           ++  ++    LG +L   L   +   R  ++++A+ 
Sbjct: 139 RAGVTRMDAIKALADRSNSPVAKTWAGALAQAEALGISLGPVLRAQAAQCRSDRHVRAEQ 198

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146
           QA+    K    +IG +  C   ++ F
Sbjct: 199 QAMQAPVKMLLPLIGCIFPCTFIVLAF 225


>gi|59711125|ref|YP_203901.1| bipartite nuclear localization signal containing protein [Vibrio
           fischeri ES114]
 gi|59479226|gb|AAW85013.1| bipartite nuclear localization signal containing protein [Vibrio
           fischeri ES114]
          Length = 290

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 71/159 (44%), Gaps = 4/159 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV--IET 58
           ++  IK R  +     P  LD++   V+ G+ V  +++ +V +     +   + +  +  
Sbjct: 133 LQAKIKARVHRVSTQMPYLLDLMAVCVQTGMTVEASLSYLVKEMKGFNKDLTQVLTKMNE 192

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +   + L +S+  M   +P  E+  F   ++     G ++   L  L+  +R+ + ++ +
Sbjct: 193 RSRMVGLEKSLEEMYVEIPSNEMRSFVMTLTQSMHYGSSIYNVLTTLASDIREVQMLELE 252

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
            +   + AK S  +I  +   +  L+    PG M +++N
Sbjct: 253 ERIGKLAAKMSVPLIVFIMIPIVILIAA--PGVMRLMLN 289


>gi|116623251|ref|YP_825407.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116226413|gb|ABJ85122.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 304

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 59/146 (40%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++  + +R        PN LD++V  V +GL +      +  +   +   + +EF  +  
Sbjct: 139 VQFCVGRRRKAIERGLPNTLDLMVVCVESGLGIDQTTLQVAKELHWAHPEICAEFTVMNL 198

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+  +E++  +     + +V     V+    + G +++++L   +  LR     +A
Sbjct: 199 ELRAGIRRAEALHNLAERTGVDDVKKLVAVLVQTDRFGTSIAQSLRGHAEYLRTMARQRA 258

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K    I   +   +  +
Sbjct: 259 EERASKLAVKLVFPIFFCVLPSLFVV 284


>gi|91977990|ref|YP_570649.1| type II secretion system protein [Rhodopseudomonas palustris BisB5]
 gi|91684446|gb|ABE40748.1| type II secretion system protein [Rhodopseudomonas palustris BisB5]
          Length = 324

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 61/148 (41%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +K+ I KR       FP+ALD+++  + +G+ +  A   +  +    S P+  E      
Sbjct: 166 LKNAISKRQLSIKRAFPDALDLLLICIESGMSIEAAFRKVSIEIGTQSIPLAEELTLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   +     L+ V      +    + G  LS++L  +++  RD +  +A
Sbjct: 226 ELSYLPDRKQAYENLAIRTGLEGVKSVCLALQQSERYGTPLSQSLRVMAQENRDMRMNEA 285

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A ++  K +  +I      +  ++ 
Sbjct: 286 EKKAAALPPKLTVPMIVFFLPVLFVVIL 313


>gi|320326053|gb|EFW82110.1| type II secretion system protein [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320330218|gb|EFW86203.1| type II secretion system protein [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330880435|gb|EGH14584.1| type II secretion system protein [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 405

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/171 (9%), Positives = 50/171 (29%), Gaps = 5/171 (2%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           D       +   ++AG+P+  +  +I   + +P        ++ +    +          
Sbjct: 67  DIAFFSRQMATMMKAGVPLLQSFDIISEGAENPNMRALVNSLKQEVSAGN----SFATAL 122

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
               +        +    +  G L   L  ++      + +KAK++       A   +  
Sbjct: 123 RQKPEYFDDLFCNLVDAGEQAGALESLLDRVATYKEKTEKLKAKIKKAMTYPAAVLIVAV 182

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            +   +   V             +     L+ +     +I    + +++ F
Sbjct: 183 IVSGILLIKVVPQFQSVFAGFGAELPMFTLMVIGL-SEVIQQWWIAIVVAF 232



 Score = 38.9 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 42/129 (32%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +  +  AG+P+ +A+  + G + + V      +V +    G+ L+ S+          
Sbjct: 277 RTLATTFAAGVPLVEALDSVAGATGNVVFKNAVNKVKQDVSTGMQLNFSMRATG------ 330

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +  ++   +  G L   L  ++    D  +         ME    A +   +   
Sbjct: 331 VFPSLAIQMTAIGEESGALDNMLDKVATYYEDEVDNMVDSLTSLMEPMIMAILGVVVGGL 390

Query: 140 VSTLVYFTS 148
           V  +     
Sbjct: 391 VIAMYLPIF 399


>gi|152967077|ref|YP_001362861.1| type II secretion system protein [Kineococcus radiotolerans
           SRS30216]
 gi|151361594|gb|ABS04597.1| type II secretion system protein [Kineococcus radiotolerans
           SRS30216]
          Length = 291

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 69/174 (39%), Gaps = 2/174 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +   N  + +  ++   + +  A+      S+  +R     +++   +   L +++ R  
Sbjct: 105 EGLANWTESLRDTIAGAIGLEQAIPATAATSAPVLRPSLNLLVDRLRVREPLPDALLRFA 164

Query: 74  RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + + ++  G  L + L  L+   R+  +++ +++A     + S  I
Sbjct: 165 DDVDDPSADVVVAALVLNARLRGPGLRDVLTALAASTREELDVRRRIEASRRSIRRSVQI 224

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           +  +   V  ++   +  Y+    +   G + L V A  +++G+  +R +   +
Sbjct: 225 VLLIVLGVMGVLSVFNRSYVAP-YSTFSGQVALIVVAGLLVLGLTWLRRLARVE 277


>gi|37680835|ref|NP_935444.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
 gi|37199584|dbj|BAC95415.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
          Length = 329

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 70/157 (44%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + H +KKR        P+ALD++V    +GL  + A+  +  +   S      E   V  
Sbjct: 170 LNHFVKKRQRMIRAGVPDALDLLVVCTESGLGFNAALRKVADELAISHPEFADELDTVCA 229

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ +S +   +V    L E++    ++S  S++GG+LS+ L + +   RD++N + 
Sbjct: 230 KIKAGVEMSTAFEELVTRTGLSEINGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEV 289

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +  A  +  K    ++  +  C    +    P  +++
Sbjct: 290 EEIAAKIPTKMIFPLLLFIWPC--FFIVAVGPALLSL 324


>gi|329905442|ref|ZP_08274132.1| Flp pilus assembly protein TadC [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547599|gb|EGF32397.1| Flp pilus assembly protein TadC [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 312

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 3/156 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQ 59
           +   I  R  + L   P  LDI+   V AGL +  A++  V +      R E +RV+   
Sbjct: 155 LHDRIALRQREILKSLPFFLDIVTLCVEAGLNLQGALSQAVDKGPPGAFRDECQRVLRDV 214

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G + +E++  M   +    ++ F T +     +G NL   L   +   R  +  +A+ 
Sbjct: 215 RAGKARAEALRAMAERLREPGITSFVTSVIQAESMGMNLGPVLRAQADQRRSERFQRAEK 274

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +AL    K    +I  +  C   +++F  P  M  L
Sbjct: 275 KALEAPVKLLLPLIAFIFPCTFIVLFF--PIVMQFL 308


>gi|197118215|ref|YP_002138642.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem]
 gi|197087575|gb|ACH38846.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem]
          Length = 304

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 59/158 (37%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           +      R        P+ LD++   V AGL +  A+        +   P+ +EF  VI 
Sbjct: 144 LDRRAGVRKTAIFHALPDVLDLLTVCVEAGLGLDAAIIKTAENFQEKNCPLIAEFNAVIL 203

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G   SE++  +     L ++    +++    +LG +L + L   S  LR ++   A
Sbjct: 204 EIRAGRPRSEALKGLAERTTLDDIKALVSMLIQTEKLGTSLGKTLRIYSDSLRTKRKQLA 263

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A     K    +   +      +V    P +  + 
Sbjct: 264 EERAAKTAVKMLFPLTFCVFPA--FMVVLLVPAFFRIF 299


>gi|311031469|ref|ZP_07709559.1| type II secretion system protein [Bacillus sp. m3-13]
          Length = 402

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 57/171 (33%), Gaps = 6/171 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
            DF   L      +RAG+ V +A  V+  Q+S   ++     V E    G  LSE+ ++ 
Sbjct: 62  RDFVIFLRQFSTLIRAGISVVEATNVLAQQTSSKALKRVLFDVEEEMKQGNPLSEAAAKH 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +       S     +    +  G L + L  L+     +   + K+ +          I
Sbjct: 122 PK-----VFSSMFINMIKAGEASGALDDTLDRLATQFEKQNETRQKIVSALTYPLVLGVI 176

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
              +   +   V  T     +    D        + A+  +     + L+I
Sbjct: 177 AIGVVIFLLVGVVPTFVAMFSDFGADLPLITRFVLWASEWMQSFWWLFLLI 227


>gi|302553075|ref|ZP_07305417.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
 gi|302470693|gb|EFL33786.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
          Length = 282

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 59/162 (36%), Gaps = 1/162 (0%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   VRAG    +A+          +      V+     G  +  +++   R    + + 
Sbjct: 116 LAGEVRAGRQPGEALLRAARDC-GGLADAQATVLAAARFGGDVPGALATAARQPGAEGLR 174

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
             +    V    G  L+  L  L+  LR  ++ ++ + A    A+ +A ++  LP     
Sbjct: 175 GLAACWRVAVDQGAGLAAGLDRLTAALRAERDQRSDLSAQLAGARTTAVMLAGLPALGLL 234

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +        ++VL++   G   L    A   +G+  +  ++ 
Sbjct: 235 IGTALGADPLHVLLHTTAGLGCLMAGGALEGLGLWWVLRIVR 276


>gi|21221974|ref|NP_627753.1| integral membrane protein [Streptomyces coelicolor A3(2)]
 gi|4539573|emb|CAB38492.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
          Length = 321

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 66/183 (36%), Gaps = 5/183 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +   ++R    +         +   VRAG    +A+      S+  +      V+     
Sbjct: 138 RRAKERRQDAVIA----LCGTLAGEVRAGRQPGEALLCAAQDSAG-LGEAQAAVLAAARF 192

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  +  +++        + +   +    V    G  L+  L  L   LR  ++ ++ ++A
Sbjct: 193 GGDVPGALALAAGQPGAEGLRGLAACWRVAVDQGAGLAAGLDRLEGALRAERDQRSDLRA 252

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
               A+A+A ++  LP     L        ++VL++   G   L    A   +G+  +  
Sbjct: 253 QLAGARATAVMLAGLPVLGLLLGVALGSDPLHVLLHTGAGVGCLLAGGALESLGVWWVTR 312

Query: 182 MIN 184
           ++ 
Sbjct: 313 IVR 315


>gi|27365114|ref|NP_760642.1| Flp pilus assembly protein TadC [Vibrio vulnificus CMCP6]
 gi|320155497|ref|YP_004187876.1| type II/IV secretion system protein TadC, associated with Flp pilus
           assembly [Vibrio vulnificus MO6-24/O]
 gi|27361260|gb|AAO10169.1| Flp pilus assembly protein TadC [Vibrio vulnificus CMCP6]
 gi|319930809|gb|ADV85673.1| type II/IV secretion system protein TadC, associated with Flp pilus
           assembly [Vibrio vulnificus MO6-24/O]
          Length = 314

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 70/157 (44%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + H +KKR        P+ALD++V    +GL  + A+  +  +   S      E   V  
Sbjct: 155 LNHFVKKRQRMIRAGVPDALDLLVVCTESGLGFNAALRKVADELAISHPEFADELDTVCA 214

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ +S +   +V    L E++    ++S  S++GG+LS+ L + +   RD++N + 
Sbjct: 215 KIKAGVEMSTAFEELVTRTGLSEINGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEV 274

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +  A  +  K    ++  +  C    +    P  +++
Sbjct: 275 EEIAAKIPTKMIFPLLLFIWPC--FFIVAVGPALLSL 309


>gi|116671473|ref|YP_832406.1| type II secretion system protein [Arthrobacter sp. FB24]
 gi|116611582|gb|ABK04306.1| type II secretion system protein [Arthrobacter sp. FB24]
          Length = 292

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 62/145 (42%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R  K   + PN LD ++ +V AGL    A+A        P+  E  R ++   
Sbjct: 136 IYSRGQERQKKIQLELPNTLDQMLIAVEAGLGFESAMARAGQNGKGPLAEELIRTLQDMQ 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S  +S   +     +Q++  F   +      G  +++ L   ++ +R ++  +A+ +
Sbjct: 196 VGRSRRDSYLALAERSNVQDLRTFVRAVVQADTYGIAIAKVLKAQAKEMRVKRRQRAEQK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145
           A+ +       ++  +   +  ++ 
Sbjct: 256 AMKLPVLVLFPLLLFIFPVIFIVIL 280


>gi|323341960|ref|ZP_08082193.1| flp pilus assembly protein TadC [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464385|gb|EFY09578.1| flp pilus assembly protein TadC [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 306

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 1/144 (0%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
             P  +DI+  SV AGL    A+  +  ++  P+  EFR       LG    E+++R+  
Sbjct: 162 QLPEVMDILSVSVVAGLSFDQALGHVTTKAEGPLIEEFRICQREIMLGKPRKEALNRLSE 221

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA-SAWII 133
              ++EV  F+  I    +LG +L   L + S+++R       + +A  +  K     ++
Sbjct: 222 RTEIEEVKSFTNAIIQADELGISLQNVLMSQSQMIRTSHRQDVEERAAKIPVKILIPMVL 281

Query: 134 GSLPFCVSTLVYFTSPGYMNVLIN 157
              P     L+    P  ++ L  
Sbjct: 282 FIFPVIFIILLGPAVPTIIDALGG 305


>gi|71734826|ref|YP_273101.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555379|gb|AAZ34590.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 405

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/180 (10%), Positives = 50/180 (27%), Gaps = 18/180 (10%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73
           D       +   ++AG+P+  +  +I   + +P        + +    G S + ++ +  
Sbjct: 67  DIAFFSRQMATMMKAGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRQKP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G L   L  ++      + +KAK++       A   + 
Sbjct: 127 E-----YFDDLFCNLVDAGEQAGALESLLDRIASYKEKTEKLKAKIKKAMTYPIAVLIVA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA------------AFMLIGIMVMRL 181
             +   +   V             +     L+ +                  +G  + + 
Sbjct: 182 IIVSGILLIKVVPQFQSVFAGFGAELPAFTLMVIGLSDIVQKWWLAIVGLFFVGAFLFKR 241



 Score = 38.6 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 42/129 (32%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +  +  AG+P+ +A+  + G + + V      +V +    G+ L+ S+          
Sbjct: 277 RTLATTFAAGVPLVEALDSVAGATGNVVFRDAVNKVKQDVSTGMQLNFSMRSTG------ 330

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +  ++   +  G L   L  ++    D  +         ME    A +   +   
Sbjct: 331 VFPSLAIQMTAIGEESGALDNMLDKVATYYEDEVDNMVDNLTSLMEPMIMAVLGVIVGGL 390

Query: 140 VSTLVYFTS 148
           V  +     
Sbjct: 391 VIAMYLPIF 399


>gi|269958189|ref|YP_003327977.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
           15894]
 gi|269306870|gb|ACZ32419.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
           15894]
          Length = 291

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 67/178 (37%), Gaps = 3/178 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  K           +   +  G+ + +A+   +  + D +R E   ++      +S  +
Sbjct: 99  RIDKLE-ALEEWTRGLAGVLTVGVGLEEALRATLRSTPDAIRPEVTTLVARLRARMSTED 157

Query: 68  SISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++      +        ++ +     + G  L+  L +L+  +      +  ++A   + 
Sbjct: 158 ALRAFADDLDDATGDLVASFLISGARRRGQGLASVLNSLAESVAADVRARRAIEADRAKP 217

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +A+A  +  +   V  +++  S  Y+      P G +LL +  A  +  ++ MR M  
Sbjct: 218 RATARWVTIITLGVLGVLFIFSSEYLAP-YRTPAGQLLLALFLAIYVSLLIWMRAMAK 274


>gi|239996354|ref|ZP_04716878.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein
           MshG (pilus type IV) [Alteromonas macleodii ATCC 27126]
          Length = 411

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/171 (10%), Positives = 58/171 (33%), Gaps = 6/171 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRM 72
           D+       +   ++AG+P+  A+  +   +S     E  + + +    G SLS S+++ 
Sbjct: 70  DEMIIFSRQMYSLLKAGIPIIRAIKGLSENASHKRFQEILKDIADQLEQGRSLSSSMAKY 129

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +       +  +  + V  +  G L +    L+      +  + ++++           
Sbjct: 130 EK-----VFTRLTISVVVVGENTGKLDDVFLQLALYFEREQETRKRIKSALRYPTFVLIA 184

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           +    F ++  V             +      + +  +   +    + +++
Sbjct: 185 LAIAMFILNLFVVPVFTQMFERFDTELPIMTRVLIGTSNFFVNYWWLLIIV 235



 Score = 38.6 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 11/127 (8%), Positives = 34/127 (26%), Gaps = 5/127 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
                 +RAG+P++  +++      +            + +   + +  S +      + 
Sbjct: 280 RSFSMILRAGVPLTAGLSLTADAVDNAHMQ-----KRIKEMRQGIEKGESLLRVSKNSEL 334

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
            S     +    +  G L   L   +       +   K     +E     ++   +    
Sbjct: 335 FSTLVLQMIAVGEETGRLEPLLEESADYYEREVDFDLKSLTAKIEPILIGFVAVMVLILA 394

Query: 141 STLVYFT 147
             +    
Sbjct: 395 LGIFTPM 401


>gi|254445165|ref|ZP_05058641.1| Bacterial type II secretion system protein F domain
           [Verrucomicrobiae bacterium DG1235]
 gi|198259473|gb|EDY83781.1| Bacterial type II secretion system protein F domain
           [Verrucomicrobiae bacterium DG1235]
          Length = 390

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 53/164 (32%), Gaps = 6/164 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVR 74
                  +   + AGLP+  A+  +  Q+ DPV     R V      G + S + ++  R
Sbjct: 52  LAVFTQQLASMLEAGLPLVSALDALQDQTEDPVFRIIIREVKADVSQGNNFSAACAKFPR 111

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                  +     +    +  G L+E L  ++        +  KV++      A   +  
Sbjct: 112 A-----FNNLFISMVEAGEASGGLAEILGKVAGYFEATTKLTKKVKSAMTYPVAVIALAI 166

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            L   +   V  T          +  G     +  +  L G ++
Sbjct: 167 MLVNVLLIFVVPTFADMFTDFGAELPGPTQFLIDLSDFLKGNIL 210



 Score = 37.0 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/133 (9%), Positives = 38/133 (28%), Gaps = 5/133 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                      +R+G+P+   + ++   S      +  R+I       ++SE        
Sbjct: 255 LSRFCRTYATLLRSGVPILRCLEIVAASSGKTQVEDACRLI-----TKNISEGGQVSDTI 309

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
             ++        +S   +  GN+   +  ++       +         +E     ++   
Sbjct: 310 EKIEFFPPMMKHMSRAGEQTGNVDGMMTKIADFYDTEADAIISSLTSLIEPMLIVFLGVV 369

Query: 136 LPFCVSTLVYFTS 148
           +   V  +     
Sbjct: 370 VGGIVMAMFMPIF 382


>gi|331018826|gb|EGH98882.1| type II secretion system protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 405

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/166 (10%), Positives = 51/166 (30%), Gaps = 6/166 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMV 73
           D       +   ++AG+P+  +  +I   + +P        + +    G S + ++ +  
Sbjct: 67  DIAFFSRQMATMMKAGVPLLQSFDIIGEGAENPNMRTLVGSLKQEVSAGNSFATALRQKP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G L   L  ++      + +KAK++       A   + 
Sbjct: 127 E-----YFDDLFCNLVDAGEQAGALESLLDRVASYKEKTEKLKAKIKKAMTYPIAVLIVA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             +   +   V             D     L+ +  + ++    ++
Sbjct: 182 IIVSGILLIKVVPQFQSVFAGFGADLPAFTLMVIGLSKIVQEWWLL 227



 Score = 39.3 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 43/129 (33%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +  +  AG+P+ +A+  + G + + V      +V +    G+ L+ S+          
Sbjct: 277 RTLATTFAAGVPLVEALDSVAGATGNVVFKNAVNKVKQDVSTGMQLNFSMRSTG------ 330

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +  ++   +  G L   L  ++    D  +         ME    A++   +   
Sbjct: 331 VFPSLAIQMTAIGEESGALDAMLDKVATYYEDEVDNMVDNLTSLMEPMIMAFLGVIVGGL 390

Query: 140 VSTLVYFTS 148
           V  +     
Sbjct: 391 VIAMYLPIF 399


>gi|196231539|ref|ZP_03130397.1| type II secretion system protein [Chthoniobacter flavus Ellin428]
 gi|196224392|gb|EDY18904.1| type II secretion system protein [Chthoniobacter flavus Ellin428]
          Length = 406

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 49/170 (28%), Gaps = 1/170 (0%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R      D       +   V AGLP+   +  +  Q+    ++  RR+I      +   +
Sbjct: 54  RGKITETDLVLFTRQLATMVDAGLPLVAGLTALYEQADPKRQAGLRRIIGEVSALVQQGD 113

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           S             +     +    + GG L+E L  L+  L     +K KV++      
Sbjct: 114 SFFE-AISKHPSVFNRLYVSMVKAGESGGLLAEILDRLATFLESAARLKKKVKSAMTYPV 172

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
               I   +   +   V             +        +  +  + G  
Sbjct: 173 IVLCIALCITTFLIVKVVPVFGEIFADFGANLPAPTQFLLDLSSFIRGNW 222



 Score = 36.3 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/130 (8%), Positives = 35/130 (26%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
                 + +RAG+P+ + ++++   S + V  E  +      +   +             
Sbjct: 271 FARTFAQLIRAGVPILEVMSIVGDTSGNYVVEESIK-----KVSADIERGDHLASSLARE 325

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +        +    +  G +   L  ++    +            +E      +   +  
Sbjct: 326 KIFPPMLVRMVGAGEQTGKIDAMLEKMADFWDEEIEAILNALTSLIEPLLIVVLGVIVGG 385

Query: 139 CVSTLVYFTS 148
            V  +     
Sbjct: 386 IVIAMFLPIF 395


>gi|188581665|ref|YP_001925110.1| type II secretion system protein [Methylobacterium populi BJ001]
 gi|179345163|gb|ACB80575.1| type II secretion system protein [Methylobacterium populi BJ001]
          Length = 323

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 64/159 (40%), Gaps = 4/159 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           + ++  KR A+    +P+ALD+ +  V +G+ V +A   +  + +     +  E   +  
Sbjct: 164 LSNMTTKRQAEIRRAWPDALDLCLICVESGMSVENAFRRVSLEIASQSTVLAEELALLTA 223

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +     L+ V   +T +    + G  + +AL  L++  RD +  +A
Sbjct: 224 ELSFLPERRVAYENLALRTGLESVKSLTTALMQAERYGTPVGQALRVLAQESRDFRMTEA 283

Query: 118 KVQALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A ++  K     I+  LP     L+         ++
Sbjct: 284 EKKAAALPPKLTVPMILFFLPVLFVVLLTPAGIQAYALM 322


>gi|332976658|gb|EGK13498.1| pilin secretion/fimbrial assembly system protein [Psychrobacter sp.
           1501(2011)]
          Length = 238

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/168 (10%), Positives = 57/168 (33%), Gaps = 8/168 (4%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLG 62
           ++KK+      D       +    +AG+P+  ++ +++   +   +     ++  +   G
Sbjct: 59  IVKKKIRAL--DIAVFARQLATMTKAGVPLLQSLDIVIETLTKPSMIEVVEQLKYSIESG 116

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
              + ++S+  +             +    +  G+L   L  ++      +++K+K++  
Sbjct: 117 TPFAAALSKHPKQ-----FDNLFCALVSAGEYSGSLDIMLERIATYKEKSEHLKSKIKKA 171

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
                A   +   +   +   V        +   +       L V+ +
Sbjct: 172 IKYPIAVTSVAIMVSLILLLKVVPVFSELFDSFDSQLPAFTQLVVSIS 219


>gi|330720593|gb|EGG98858.1| Type IV fimbrial assembly protein PilC [gamma proteobacterium
           IMCC2047]
          Length = 407

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/175 (12%), Positives = 55/175 (31%), Gaps = 8/175 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRM 72
            D       +   ++AG+P+  +  ++     +    E    +      G + + ++ + 
Sbjct: 68  ADITLFTRQMATMMKAGVPLVQSFDIVSDGIDNLTLKELVSTIKTDVASGNNFASALRKH 127

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R+            +    +  G L   L  L+      + +K K++       A   +
Sbjct: 128 PRH-----FDELMCNLVESGEQSGALETMLDRLATYKEKNETLKKKIKKAMTYPIAVIVV 182

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMINF 185
              +   +   V  T          +      M++G++        +V+  +I F
Sbjct: 183 AIIVTGILLVKVVPTFAEIFEGFGAELPAFTQMVIGISEVLQAWWYIVVAAVIAF 237



 Score = 38.2 bits (87), Expect = 0.51,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 40/131 (30%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77
               +  +  AG+P+ +A+    G + + V  S   RV E    G  L+ S+        
Sbjct: 277 FARTLSTTFAAGVPLVEALTSTAGATGNVVYSSAVERVREDVSTGQQLNFSMRN------ 330

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     ++   +  G L E L   +    +  +         ME    A +   + 
Sbjct: 331 TNVFPNMLIQMTAIGEESGALDEMLDKAAEFYEEEVDNAVDNLTALMEPMIMAVLGVLIG 390

Query: 138 FCVSTLVYFTS 148
             +  +     
Sbjct: 391 GLIIAMYLPIF 401


>gi|171057240|ref|YP_001789589.1| type II secretion system protein [Leptothrix cholodnii SP-6]
 gi|170774685|gb|ACB32824.1| type II secretion system protein [Leptothrix cholodnii SP-6]
          Length = 408

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 49/166 (29%), Gaps = 6/166 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   ++AG+P+  A  ++    S+  +      +      G SLS +  R 
Sbjct: 69  KDIAVFTRQLATMLKAGVPLLQAFDIVARGSSNPRLTRMLTDIRGDVETGTSLSAAFRRH 128

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L  L+        ++ K+++  +   A   +
Sbjct: 129 PLQ-----FDALYCNLVEAGESAGILETLLDRLANYQEKTIELQNKIRSALIYPVAVLVV 183

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
              +   +   V  +          D     L+ +A +   +    
Sbjct: 184 AFIVVAVIMIFVIPSFKDIFKSFGADLPLPTLIVIAMSEFFVQYWF 229



 Score = 35.9 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 41/128 (32%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +     AG+P+ +A+  + G + + V         T+ +   +S   +          
Sbjct: 280 RTLSTMFAAGVPLVEALDSVGGAAGNAVF-----AQATEQIQRDVSTGAALTSSMQATNI 334

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
                  +S   +  G+L + L+ ++       +   K  +  ME      +   +   V
Sbjct: 335 FPNMVLQMSSIGEESGSLDQMLSKVADFYEQEVDEAVKGLSTLMEPIIIVVLGTIIGGIV 394

Query: 141 STLVYFTS 148
            ++     
Sbjct: 395 VSMYLPIF 402


>gi|170750194|ref|YP_001756454.1| type II secretion system protein [Methylobacterium radiotolerans
           JCM 2831]
 gi|170656716|gb|ACB25771.1| type II secretion system protein [Methylobacterium radiotolerans
           JCM 2831]
          Length = 325

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 68/158 (43%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + +  KKR  +    +P+ALD+ +  V +G+ + +A   +  +   SS  +  E   +  
Sbjct: 167 LVNTAKKRQTEIRKAWPDALDLTLICVESGMAIENAFRKVSTEIATSSVVLAEELALMTA 226

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   +V    L+ V   +T +    + G  + +AL  LS+  RD +  +A
Sbjct: 227 EMSFLPDRRQAYENLVMRTGLEPVKSVATALIQAERYGTPVGQALRVLSQESRDMRMNEA 286

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A  +  K +  +I      +  ++   +P  + ++
Sbjct: 287 EKKAAGLPPKLTVPMILFFLPVLFVVI--ITPAVIQIM 322


>gi|119505106|ref|ZP_01627182.1| type IV pilus biogenesis protein PilC [marine gamma proteobacterium
           HTCC2080]
 gi|119459088|gb|EAW40187.1| type IV pilus biogenesis protein PilC [marine gamma proteobacterium
           HTCC2080]
          Length = 402

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/166 (10%), Positives = 51/166 (30%), Gaps = 6/166 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   ++AG+P+  +  ++     +  +      +      G  L+ ++++ 
Sbjct: 63  ADIAIFSRQMATMMKAGVPLVQSFEIVQEGLENAAMSKLVGEIKSEVSSGGGLAPALAKH 122

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            ++            +    +  G L   L  ++      + +KAK++       A   +
Sbjct: 123 PKH-----FDELFCSLVASGENSGTLEVMLDRVATYKEKTEALKAKIRKAMTYPIAVIIV 177

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
              +   +   V  T          D  G  L  +  +  +    +
Sbjct: 178 AIVVTGILLVKVVPTFAETFKGFGADLPGFTLFVLGISEFVQQWWL 223



 Score = 35.1 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 42/130 (32%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +  +  AG+P+ +A+    G + + V +   R I    +  +     S  +     
Sbjct: 272 FSRTLSTTFAAGVPLVEALDSTAGAAGNAVYARGIRQIRDDVMSGT-----SLHLATRGT 326

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    ++   +  G+L E L+ ++     + +      +  ME    + +   +  
Sbjct: 327 GLFPAMLLQMTAIGEESGSLDEMLSKVADQYEAQVDNAVDSLSSLMEPIIMSILGVLVGG 386

Query: 139 CVSTLVYFTS 148
            +  +     
Sbjct: 387 LMIAMYLPIF 396


>gi|119899524|ref|YP_934737.1| type 4 pilus biogenesis protein [Azoarcus sp. BH72]
 gi|119671937|emb|CAL95851.1| type 4 pilus biogenesis protein [Azoarcus sp. BH72]
          Length = 411

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 54/179 (30%), Gaps = 7/179 (3%)

Query: 1   MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAV-IVGQSSDPVRSEFRRVIET 58
           ++     R  K    D       +   ++AG+P+  A  + I G  +  +      V   
Sbjct: 58  IRKQKLSRGHKIKDKDIALFTRQLATMMKAGVPLLQAFDIGIKGSGNPSLARLLNEVRTD 117

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G SLS++ S+                +    +  G L   L  ++        +K K
Sbjct: 118 VETGSSLSQAFSKHP-----VYFDKLFCNLVGAGEQAGILDSLLDRIATYKEKILAIKGK 172

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +++      A   +   +   +   V             +  G  L+ +A +   I   
Sbjct: 173 IKSALFYPIAVVVVAALVISVMMLFVIPEFKSVFTGFGAELPGPTLMVIAMSDFFIEYW 231



 Score = 39.3 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/129 (10%), Positives = 39/129 (30%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +     AG+P+ +A+  + G + + +     +++      G SL+ S+          
Sbjct: 283 RTLSTMFSAGVPLVEALDSVGGAAGNYIYLMATKQIQTEVSTGTSLTVSMQNAA------ 336

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                   +    +  G L   L  ++       +      +  +E     ++   +   
Sbjct: 337 VFPTMVVQMVSIGEESGQLDSMLGKVADFYEQEVDDAVAGLSQLLEPLIMVFLGTVIGGL 396

Query: 140 VSTLVYFTS 148
           V  +     
Sbjct: 397 VVAMYLPIF 405


>gi|58425802|gb|AAW74839.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 489

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/173 (11%), Positives = 55/173 (31%), Gaps = 6/173 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            +       +   +++G+P+  ++ +I     +  ++    ++      G SL ESIS+ 
Sbjct: 149 KEIAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLYESISKH 208

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L  ++    + + +K K++           +
Sbjct: 209 PVQ-----FDELYRNLVRAGEGAGVLETVLETVATYKENIEALKGKIKKALFYPAMVVAV 263

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              +   +   V             +      L V A+  ++    + L++  
Sbjct: 264 AIIVSAILLIFVVPQFEEVFKSFGAELPAFTQLLVNASRFMVSYWWLMLIVTV 316



 Score = 40.1 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/137 (10%), Positives = 48/137 (35%), Gaps = 7/137 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISR 71
                        + +AG+P+ +A+ ++ G + + +  E   R+ +   +G  ++ ++ +
Sbjct: 352 NSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEEAVFRMRDDVSVGYPVNMAMKQ 411

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +  +  +         ++   +  G L   L  ++    +  N      +  +E     +
Sbjct: 412 VNLFPHM------VIQMTAIGEEAGALDAMLFKVAEYFEEEVNNAVDALSSLLEPLIMVF 465

Query: 132 IIGSLPFCVSTLVYFTS 148
           I   +   V  +     
Sbjct: 466 IGTIVGGMVIGMYLPIF 482


>gi|300914022|ref|ZP_07131339.1| Type II secretion system F domain protein [Thermoanaerobacter sp.
           X561]
 gi|300890707|gb|EFK85852.1| Type II secretion system F domain protein [Thermoanaerobacter sp.
           X561]
          Length = 303

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 79/183 (43%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L +++  K  + F + + ++   ++     + A      ++ +P++    RV+    
Sbjct: 117 LDYLGRRKIRKTEEQFRDFVKMLGAYLKMVPSFAGAFIKAAEEAENPLKEHTDRVLRRFQ 176

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  L E++    + +    +  +   I    ++  +LS      ++ L +R  M  ++ 
Sbjct: 177 LGEDLEEALKEF-KNIESTYIKVWIDSIIFAVRMKSDLSRVCERTAKKLYERIKMSNRIA 235

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVM 179
           A++++AK+    +  +   +       SP ++    + P G +++  AA    I  + ++
Sbjct: 236 AMTVQAKSLMVSLVGIMAFMIVSTVSVSPDFIRT-FSSPIGKLVIAYAALSYFISTLYIL 294

Query: 180 RLM 182
           + +
Sbjct: 295 KRI 297


>gi|225376646|ref|ZP_03753867.1| hypothetical protein ROSEINA2194_02288 [Roseburia inulinivorans DSM
           16841]
 gi|225211529|gb|EEG93883.1| hypothetical protein ROSEINA2194_02288 [Roseburia inulinivorans DSM
           16841]
          Length = 240

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 72/190 (37%), Gaps = 7/190 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-------DPVRSEFRRVIE 57
           +KKR       F + L  +  +VRAG     AV   +           D V      +++
Sbjct: 51  VKKRKKTLRLQFKDFLGSMSVAVRAGNVEIYAVKSALDDLRLSYSSKADIVLEVENMILQ 110

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
            +  G+ L E          L+++  F+ V SV         + L     I+RD+  ++ 
Sbjct: 111 YEKGGIPLKELFEDFADRSELEDIHSFAAVYSVIEGKSDRFGDILTQTEEIIRDKIEIEQ 170

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +++   + AK+   ++  +P  +   +     G ++ L     GH+   +A     +  +
Sbjct: 171 EIETTIISAKSETMVMLIMPIVIVVAMSGMGSGLLDSLFTTAAGHLSATIALIIFAVSYI 230

Query: 178 VMRLMINFDV 187
           +     + +V
Sbjct: 231 LAVKSSDIEV 240


>gi|209809175|ref|YP_002264713.1| bacterial type II secretion system protein F [Aliivibrio
           salmonicida LFI1238]
 gi|208010737|emb|CAQ81128.1| bacterial type II secretion system protein F [Aliivibrio
           salmonicida LFI1238]
          Length = 292

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 61/157 (38%), Gaps = 4/157 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +   IK    K     P  LD++   V  G+ +  ++A +  +     +     V     
Sbjct: 134 LNSRIKTLRDKLSSQLPYLLDLLAMCVHTGMTIESSMAYLAKEMRGFDKDLAHMVSRTND 193

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +   + LS ++  +   +P  E+  F   +      G ++   L  L+  +R+ + +  +
Sbjct: 194 RARIVGLSVALDELYIKVPTNEMRSFVMTLKQSLHYGSSIYGILNTLAEDIRNVRLLSLE 253

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            +   + AK S  +I  +   V  L+    PG M ++
Sbjct: 254 EKVGKLAAKMSVPLILFIMIPVVILIAA--PGIMRMM 288


>gi|261820219|ref|YP_003258325.1| type II secretion system F domain protein [Pectobacterium wasabiae
           WPP163]
 gi|261604232|gb|ACX86718.1| Type II secretion system F domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 319

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +K     R  K     P+ALD++V    AGLP+   + V+  +   SS  +  E      
Sbjct: 159 LKWRAASRGEKLARAVPDALDLMVVCAEAGLPIGRVLQVVSKELGLSSPEMADELHYTAA 218

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +    + ++  +     + E+      +    + G  LS+AL  ++   R    +  
Sbjct: 219 ELQILSDRTLAMRHLAERTRVSEIESMVATLIQAERYGTPLSQALRTIADESRKTLILGL 278

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +A  + A+ S  ++  +   +  ++
Sbjct: 279 EEKAGKLPAQLSVPLMALILPPIIAIM 305


>gi|87199542|ref|YP_496799.1| type II secretion system protein [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87135223|gb|ABD25965.1| type II secretion system protein [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 322

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 65/149 (43%), Gaps = 3/149 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++    +R     + FPN LD+I+  V AGL +  A   +  +   +   V     R   
Sbjct: 158 VRIKADRRMEAITNGFPNCLDLILVCVEAGLGMEAAFDRVSREIARAEPQVAHLLVRTNL 217

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  E++ RM     + E+  F+T++    +LG ++   L   +  +R+++ M+A
Sbjct: 218 HLRAGATREEALHRMATLAGVDEIRSFATLLIQSEKLGTSIGTTLRVFASEMREKRRMRA 277

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF 146
           + +A  +    S  ++  +   +  ++  
Sbjct: 278 EEKAHRLPVLISLPLVTCMLPTMIGVLMI 306


>gi|84387237|ref|ZP_00990258.1| Flp pilus assembly protein TadC [Vibrio splendidus 12B01]
 gi|84377884|gb|EAP94746.1| Flp pilus assembly protein TadC [Vibrio splendidus 12B01]
          Length = 323

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 73/158 (46%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  L K+R  K  +  P+ALD++V    +GL  + A+  +  +          E   V  
Sbjct: 158 LSKLQKERQKKIRNGVPDALDLLVVCTESGLGFNAALGRVASELYVSQPEFADELETVFA 217

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+++ +++ +++    L E+    +++S  S++GG+L++ L + +   RD++   A
Sbjct: 218 KIQAGVTMPDALRQLIERTGLVELEGLVSLLSHASRMGGSLAQTLRDYTEDFRDKRQQAA 277

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  A  +  K    ++  +  C    +    PG + V+
Sbjct: 278 EEIAAKIPTKMLFPMLIFIWPC--FFIVALGPGLLIVM 313


>gi|330954319|gb|EGH54579.1| type II secretion system protein [Pseudomonas syringae Cit 7]
          Length = 405

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/166 (10%), Positives = 51/166 (30%), Gaps = 6/166 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMV 73
           D       +   ++AG+P+  +  +I   + +P        + +    G S + ++ +  
Sbjct: 67  DIAFFSRQMATMMKAGVPLLQSFDIISEGAENPNMRTLVGSLKQEVSAGNSFATALRQKP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G L   L  ++      + +KAK++       A   + 
Sbjct: 127 E-----YFDDLFCNLVDAGEQAGALESLLDRVASYKEKTEKLKAKIKKAMTYPIAVLIVA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             +   +   V             D     L+ +  + ++    ++
Sbjct: 182 IIVSGILLIKVVPQFQSVFAGFGADLPAFTLMVIGLSKIVQEWWLL 227



 Score = 39.3 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 43/129 (33%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +  +  AG+P+ +A+  + G + + V      +V +    G+ L+ S+          
Sbjct: 277 RTLATTFAAGVPLVEALDSVAGATGNVVFKNAVNKVKQDVSTGMQLNFSMRSTG------ 330

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +  ++   +  G L   L  ++    D  +         ME    A++   +   
Sbjct: 331 VFPSLAIQMTAIGEESGALDTMLDKVATYYEDEVDNMVDNLTSLMEPMIMAFLGVIVGGL 390

Query: 140 VSTLVYFTS 148
           V  +     
Sbjct: 391 VIAMYLPIF 399


>gi|297583739|ref|YP_003699519.1| type II secretion system F domain-containing protein [Bacillus
           selenitireducens MLS10]
 gi|297142196|gb|ADH98953.1| Type II secretion system F domain protein [Bacillus
           selenitireducens MLS10]
          Length = 402

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 62/174 (35%), Gaps = 6/174 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
             D    L  +   + AG+ + D+V ++  Q+ +  +RS    V E    G+S+S+S  +
Sbjct: 62  SKDMVIFLRQMTTLLTAGISLVDSVRLLGEQTPNKALRSALVEVEEDLRQGISMSQSTEK 121

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +             +    + GGNL E    L+     +  +K KV +          
Sbjct: 122 HRKVFQP-----LVVNMIRAGEAGGNLDEIFERLAVYYEKQNRIKQKVISALAYPATLGV 176

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           I   +   +  +V  +         ++     L  + A   +   + + L++  
Sbjct: 177 IAIGVVMFLLAVVVPSFADMFAGFDSELPWITLFVLNAGDWMQSWVWLILLLTV 230


>gi|257139286|ref|ZP_05587548.1| hypothetical protein BthaA_08789 [Burkholderia thailandensis E264]
          Length = 301

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 71/151 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V     
Sbjct: 151 LASRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTDAPLRGCLDHVSRMLR 210

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 211 SGVEIDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 270

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
           A+S E + SAW++G+LP  + + V  T+P Y
Sbjct: 271 AMSAETRLSAWVLGALPVGIGSFVIATNPKY 301


>gi|91794691|ref|YP_564342.1| type II secretion system protein [Shewanella denitrificans OS217]
 gi|91716693|gb|ABE56619.1| type II secretion system protein [Shewanella denitrificans OS217]
          Length = 405

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/165 (11%), Positives = 52/165 (31%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRM 72
           D+       +    R+G+P+  A+A +   +   V  E    ++E    G  LS ++++ 
Sbjct: 64  DELQIFTRQMYSLTRSGIPILRAIAGLSESTHSKVMKEALEDILEQLTAGRPLSSAMNQY 123

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +             +    +  G L +    LS  +   +  + ++++           
Sbjct: 124 PK-----VFDALFVSMIHVGENTGKLEDVFIQLSSYIEREQETRRRIKSAMRYPMFVLGA 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           I      ++ +V        +    +      L +  +   +   
Sbjct: 179 IVIAMVILNIMVIPKFADMFSRFGAELPWATKLLIGTSSAFVNYW 223



 Score = 40.9 bits (94), Expect = 0.086,   Method: Composition-based stats.
 Identities = 10/132 (7%), Positives = 35/132 (26%), Gaps = 5/132 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                      + AG+P++ A++++     +              +   +    S +   
Sbjct: 269 LARYCRSFSMMLSAGVPMTQALSLVADAVDNAYMH-----DAIVGMRRGIESGESMLRVS 323

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
              Q  +     +    +  G + + L + +       +   K     +E     ++   
Sbjct: 324 NQSQLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGFVACI 383

Query: 136 LPFCVSTLVYFT 147
           +      +    
Sbjct: 384 VLILALGIYLPM 395


>gi|256832577|ref|YP_003161304.1| type II secretion system protein [Jonesia denitrificans DSM 20603]
 gi|256686108|gb|ACV09001.1| type II secretion system protein [Jonesia denitrificans DSM 20603]
          Length = 410

 Score = 72.5 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 56/182 (30%), Gaps = 18/182 (9%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72
            +       +   + AGL +  A+ ++  Q+ + V       V      G SLS ++++ 
Sbjct: 71  KEIAIMSRQLATMINAGLSLLRALTILTEQTENKVLQGILGTVRSDVETGGSLSSALAKH 130

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +  P          +    + GG L + L ++++   D   +K K+++          I
Sbjct: 131 PKVFPP-----LMINMVRAGETGGFLDKTLLSIAKNFEDEVKLKGKIKSAMTYPVVVLVI 185

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRG------------HMLLGVAAAFMLIGIMVMR 180
                  +   +     G    L  +                M +      +  G +   
Sbjct: 186 AILASAGMLIFIVPVFAGMFATLGGELPFVTQILVTMSDFLKMAIWPILLLVFAGFIWWN 245

Query: 181 LM 182
            +
Sbjct: 246 RI 247



 Score = 44.3 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/133 (11%), Positives = 35/133 (26%), Gaps = 5/133 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + AG+P+  A+ ++   S + V            +  S+    +        
Sbjct: 279 FTRNLGAMLSAGVPILQALEIVGETSGNIVVE-----HAANDVIDSVRRGRALTAPLSEN 333

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G L + L  ++           +     +E      I G +  
Sbjct: 334 PVFPPMVVQMMAVGEDTGALDDMLEKIAEFYDAEVEATTEQLTSLIEPLMILVIGGIVGG 393

Query: 139 CVSTLVYFTSPGY 151
            V  L       +
Sbjct: 394 MVIALYMPIFSIF 406


>gi|294140782|ref|YP_003556760.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12]
 gi|293327251|dbj|BAJ01982.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12]
          Length = 322

 Score = 72.5 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 68/158 (43%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +++L  +R  +    FP+ALD++V    AGL +  A+  +  +   S   + SE   V  
Sbjct: 160 LQNLASRRMKELRAGFPDALDLLVVCCEAGLGLLAALQRVANELAISHVSLASELDLVCS 219

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL++  ++        L ++   ++ IS   +LG  ++  L   S   RD++  +A
Sbjct: 220 KVRAGLTIKVALQEFTDRTGLDDIKGLNSAISQSIRLGTGIAATLRVFSDEYRDKRLQEA 279

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + QA  +  K    ++  +       +    P  + V+
Sbjct: 280 EEQAAKLAVKMIFPMMLGIWPS--FFIVAVGPAVLKVM 315


>gi|220918108|ref|YP_002493412.1| type II secretion system protein [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219955962|gb|ACL66346.1| type II secretion system protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 319

 Score = 72.5 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 69/166 (41%), Gaps = 4/166 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +   I  R        P+ALD++V  V AGL +  +V  +  +       + +E R    
Sbjct: 154 LTSRISSRQLTLERGLPDALDLLVTCVEAGLGLDASVQRVSEEIHRAWPQLATELRTTFL 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+   E+  R+     ++++   S  ++     G +++ AL   S  +R R+  +A
Sbjct: 214 EVKAGIPRIEAFRRLATRTGVKDLKSLSATLAQTEIFGTSVALALRVQSDGMRVRRMHRA 273

Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162
           + +A  +  K +   I+  LP  ++ ++     G M  L+    G 
Sbjct: 274 EEKAAYVSVKMTLPLILCILPSLLAVIMGPAIIGIMRALMPALGGK 319


>gi|50119739|ref|YP_048906.1| putative type IV pilus protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610265|emb|CAG73708.1| putative type IV pilus protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 319

 Score = 72.5 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +K     R  K     P+ALD++V    AGLP+   + V+  +   SS  +  E      
Sbjct: 159 LKWRAASRGEKLARAVPDALDLMVVCAEAGLPIGRVLQVVSKELGLSSPEMADELHYTAA 218

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +    + ++  +     + E+      +    + G  LS+AL  ++   R    +  
Sbjct: 219 ELQILSDRTLAMKHLAERTRVSEIESMVATLIQAERYGTPLSQALRTIADESRKTLILGL 278

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +A  + A+ S  ++  +   +  ++
Sbjct: 279 EEKAGKLPAQLSVPLMALILPPIIAIM 305


>gi|56421162|ref|YP_148480.1| hypothetical protein GK2627 [Geobacillus kaustophilus HTA426]
 gi|56381004|dbj|BAD76912.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 403

 Score = 72.5 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 50/174 (28%), Gaps = 4/174 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
             F   L      VRAG+ + D++ ++  Q+         R ++     L    +     
Sbjct: 63  QHFVVFLRQFATLVRAGVTIVDSIHILAEQTE---SKALARALDDMEQHL-REGNPLSAA 118

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +        +    +  G L E L  L+         + K+ +      A A I 
Sbjct: 119 AAKHPRIFPPLFVNMVRAGEASGTLDETLDRLADHFEKVHRTRQKIVSALAYPVAVAIIA 178

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
            ++   +   V  T          +        + A+  +     M  ++   V
Sbjct: 179 VAVVIFLLVSVVPTFVDMFADFHAELPAITKFVLKASAFMQHYWWMITLLAIGV 232


>gi|320116991|ref|YP_004187150.1| type II secretion system F domain-containing protein
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|319930082|gb|ADV80767.1| Type II secretion system F domain protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 304

 Score = 72.5 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 79/183 (43%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L +++  K  + F + + ++   ++     + A      ++ +P++    RV+    
Sbjct: 118 LDYLGRRKIRKTEEQFRDFVKMLGAYLKMVPSFAGAFIKAAEEAENPLKEHTDRVLRRFQ 177

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  L E++    + +    +  +   I    ++  +LS      ++ L +R  M  ++ 
Sbjct: 178 LGEDLEEALKEF-KNIESTYIKVWIDSIIFAVRMKSDLSRVCERTAKKLYERIKMSNRIA 236

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVM 179
           A++++AK+    +  +   +       SP ++    + P G +++  AA    I  + ++
Sbjct: 237 AMTVQAKSLMVSLVGIMAFMIVSTVSVSPDFIRT-FSSPIGKLVIAYAALSYFISTLYIL 295

Query: 180 RLM 182
           + +
Sbjct: 296 KRI 298


>gi|258516391|ref|YP_003192613.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
           771]
 gi|257780096|gb|ACV63990.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 403

 Score = 72.5 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 70/185 (37%), Gaps = 7/185 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           +++ ++KR    +         +   + AG+P++  +  +  QS +P +      +    
Sbjct: 50  LRNALQKRGKVKIGQLSFFSRQLSAMLTAGIPLTRGLYTLSEQSENPVLARAAGEMAHAV 109

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G+S S ++S           S     +    ++GG + E L  LS  L   K ++  +
Sbjct: 110 EGGMSFSAAMSA-----HQDIFSKMYVDMIKAGEVGGMMEEMLNRLSMQLEREKILRDNI 164

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP-RGHMLLGVAAAFMLIGIMV 178
           ++ +          G +  C+   +     G++   +  P    ++ G + +     ++ 
Sbjct: 165 KSATFYPIIIIMFAGLVILCMMFFIVPIFEGFIPQGVAPPLPTRIIFGFSHSLRSYSLLY 224

Query: 179 MRLMI 183
           M  +I
Sbjct: 225 MLGII 229


>gi|167036497|ref|YP_001664075.1| type II secretion system protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167038602|ref|YP_001666180.1| type II secretion system protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167039381|ref|YP_001662366.1| type II secretion system protein [Thermoanaerobacter sp. X514]
 gi|307725293|ref|YP_003905044.1| type II secretion system F domain-containing protein
           [Thermoanaerobacter sp. X513]
 gi|320114925|ref|YP_004185084.1| type II secretion system F domain-containing protein
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166853621|gb|ABY92030.1| type II secretion system protein [Thermoanaerobacter sp. X514]
 gi|166855331|gb|ABY93739.1| type II secretion system protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|166857436|gb|ABY95844.1| type II secretion system protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|307582354|gb|ADN55753.1| Type II secretion system F domain protein [Thermoanaerobacter sp.
           X513]
 gi|319928016|gb|ADV78701.1| Type II secretion system F domain protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 301

 Score = 72.5 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 79/183 (43%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L +++  K  + F + + ++   ++     + A      ++ +P++    RV+    
Sbjct: 115 LDYLGRRKIRKTEEQFRDFVKMLGAYLKMVPSFAGAFIKAAEEAENPLKEHTDRVLRRFQ 174

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  L E++    + +    +  +   I    ++  +LS      ++ L +R  M  ++ 
Sbjct: 175 LGEDLEEALKEF-KNIESTYIKVWIDSIIFAVRMKSDLSRVCERTAKKLYERIKMSNRIA 233

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVM 179
           A++++AK+    +  +   +       SP ++    + P G +++  AA    I  + ++
Sbjct: 234 AMTVQAKSLMVSLVGIMAFMIVSTVSVSPDFIRT-FSSPIGKLVIAYAALSYFISTLYIL 292

Query: 180 RLM 182
           + +
Sbjct: 293 KRI 295


>gi|330987706|gb|EGH85809.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 405

 Score = 72.5 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/180 (10%), Positives = 50/180 (27%), Gaps = 18/180 (10%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73
           D       +   ++AG+P+  +  +I   + +P        + +    G S + ++ +  
Sbjct: 67  DIAFFSRQMATMMKAGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRQKP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G L   L  ++      + +KAK++       A   + 
Sbjct: 127 E-----YFDDLFCNLVDAGEQAGALESLLDRVASYKEKTEKLKAKIKKAMTYPIAVLIVA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA------------AFMLIGIMVMRL 181
             +   +   V             +     L+ +                  +G  + + 
Sbjct: 182 IIVSGILLIKVVPQFQSVFAGFGAELPAFTLMVIGLSDIVQKWWLAIVGLFFVGAFLFKR 241



 Score = 38.6 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 42/129 (32%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +  +  AG+P+ +A+  + G + + V      +V +    G+ L+ S+          
Sbjct: 277 RTLATTFAAGVPLVEALDSVAGATGNVVFRDAVNKVKQDVSTGMQLNFSMRSTG------ 330

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +  ++   +  G L   L  ++    D  +         ME    A +   +   
Sbjct: 331 VFPSLAIQMTAIGEESGALDNMLDKVATYYEDEVDNMVDNLTSLMEPMIMAVLGVIVGGL 390

Query: 140 VSTLVYFTS 148
           V  +     
Sbjct: 391 VIAMYLPIF 399


>gi|289674983|ref|ZP_06495873.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           FF5]
          Length = 405

 Score = 72.5 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/188 (11%), Positives = 52/188 (27%), Gaps = 19/188 (10%)

Query: 8   RTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSL 65
           R  K    D       +   ++AG+P+  +  +I   + +P        + +    G S 
Sbjct: 59  RGKKIKPLDIAFFSRQMATMMKAGVPLLQSFDIISEGAENPNMQTLVNSLKQEVSAGNSF 118

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           + ++ +                +    +  G L   L  ++      + +KAK++     
Sbjct: 119 ATALRQKPE-----YFDDLYCNLVDAGEQAGALESLLDRVASYKEKTEKLKAKIKKAMTY 173

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA------------AAFML 173
             A   +   +   +   V        +          L+ V              +   
Sbjct: 174 PTAVLIVAAIVTGILLIKVVPQFQSVFSSFGAALPTFTLMVVGLSEFVQQWWLGIISVFF 233

Query: 174 IGIMVMRL 181
            G  + + 
Sbjct: 234 AGFFIFKR 241



 Score = 34.7 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 41/129 (31%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +  +  AG+P+ +A+  + G + + V      +V +    G+ L+ S+          
Sbjct: 277 RTLATTFAAGVPLVEALDSVAGATGNVVFRNAVNKVKQDVSTGMQLNFSMRSTG------ 330

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +  ++   +  G L   L  ++    D  +         ME      +   +   
Sbjct: 331 VFPSLAIQMTAIGEESGALDTMLDKVATYYEDEVDNMVDSLTSLMEPMIMVVLGVVVGGL 390

Query: 140 VSTLVYFTS 148
           V  +     
Sbjct: 391 VLAMYLPIF 399


>gi|14590540|ref|NP_142608.1| hypothetical protein PH0653 [Pyrococcus horikoshii OT3]
 gi|3257061|dbj|BAA29744.1| 358aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 358

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 74/182 (40%), Gaps = 2/182 (1%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K + K+R  +     P  L  +   + AG+ +++A+  +       V  EF  V++  H 
Sbjct: 172 KSVWKRRVEEVEKALPYVLRHMASLLNAGIGLAEAMVSVSKADYGVVSEEFAMVVQEMHK 231

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S  +++++    M    VS     I    + GGNL++ L  ++        +K     
Sbjct: 232 GSSFEDALTKFEEKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIKLMDYV 291

Query: 122 LSMEAKASAWIIG-SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             +   +  ++    +   +  +V      +M  L+ +  G +++ +   F  +  +++ 
Sbjct: 292 QKINGISFVYMFMTVVMPTLLIVVILAGSIFMKRLVINLSGMIVIFL-LGFPTLSFIIIM 350

Query: 181 LM 182
           ++
Sbjct: 351 MI 352


>gi|153834029|ref|ZP_01986696.1| Flp pilus assembly protein TadC [Vibrio harveyi HY01]
 gi|148869584|gb|EDL68574.1| Flp pilus assembly protein TadC [Vibrio harveyi HY01]
          Length = 315

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 64/148 (43%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++ ++ KR        P+ LD++V    +GL  + A+  +  +   S   +  E   V  
Sbjct: 155 LRRMVNKRQKAIRAGIPDMLDLLVVCTESGLGFNAALRRVADELVISHPELADEIDTVCN 214

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G  + E++  +V    L+E+    +++S  S++GG+L  +L   +   RD++   A
Sbjct: 215 KIQAGKPMPEALRELVVRTGLEEIMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAA 274

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           +  A  +  K    ++  +  C   +  
Sbjct: 275 EEVAAKIPVKMMFPMVLFIWPCFFIVAV 302


>gi|88859015|ref|ZP_01133656.1| type IV pilus biogenesis protein PilC [Pseudoalteromonas tunicata
           D2]
 gi|88819241|gb|EAR29055.1| type IV pilus biogenesis protein PilC [Pseudoalteromonas tunicata
           D2]
          Length = 412

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/167 (10%), Positives = 49/167 (29%), Gaps = 6/167 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
            D       I   + AG+P+  A+ +I   S    ++    ++ +    G   S+++ + 
Sbjct: 71  KDICVLTRQIATMLMAGVPLIQAIDMIGSGSEKKSLQRLITKIADEVKAGNPFSDALRKH 130

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L      ++      + +K+K++   +   A   I
Sbjct: 131 PIL-----FDDLYCDLVASGEQSGALDNIFDRVATYKEKSEALKSKIKKAMIYPIAVLSI 185

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
              +   +   V             +     L  +  +  +     +
Sbjct: 186 AFVVTTILLIFVVPQFQSVFAGFGAELPAFTLFVIGISEFMQNYWWL 232


>gi|261418357|ref|YP_003252039.1| type II secretion system protein F [Geobacillus sp. Y412MC61]
 gi|319767684|ref|YP_004133185.1| type II secretion system F domain protein [Geobacillus sp.
           Y412MC52]
 gi|261374814|gb|ACX77557.1| Type II secretion system F domain protein [Geobacillus sp.
           Y412MC61]
 gi|317112550|gb|ADU95042.1| Type II secretion system F domain protein [Geobacillus sp.
           Y412MC52]
          Length = 403

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 53/166 (31%), Gaps = 6/166 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
             F   L      VRAG+ + D++ ++  Q+   P+      + ++   G  LS + +  
Sbjct: 63  QHFVIFLRQFATLVRAGVTIVDSIRILAEQTESKPLAKTLLDIEQSLRSGNPLSAAAANH 122

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R  P          +    +  G L E L  L+         + K+ +      A A I
Sbjct: 123 PRIFPP-----LFVNMVRAGEASGTLDETLDRLADHFEKMHRTRQKIASALAYPIAVAII 177

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             ++   +   V  T          +        + A+ ++     
Sbjct: 178 ATAVVIFLLVAVVPTFVEMFAEFHAELPAITKFVLKASSVMQRYWW 223


>gi|297529209|ref|YP_003670484.1| type II secretion system F domain protein [Geobacillus sp. C56-T3]
 gi|297252461|gb|ADI25907.1| Type II secretion system F domain protein [Geobacillus sp. C56-T3]
          Length = 403

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 53/166 (31%), Gaps = 6/166 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
             F   L      VRAG+ + D++ ++  Q+   P+      + ++   G  LS + +  
Sbjct: 63  QHFVIFLRQFATLVRAGVTIVDSIRILAEQTESKPLAKTLLDIEQSLRSGNPLSAAAANH 122

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R  P          +    +  G L E L  L+         + K+ +      A A I
Sbjct: 123 PRIFPP-----LFVNMVRAGEASGTLDETLDRLADHFEKMHRTRQKIASALAYPIAVAII 177

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             ++   +   V  T          +        + A+ ++     
Sbjct: 178 ATAVVIFLLVAVVPTFVEMFAEFHAELPAITKFVLKASSVMQRYWW 223


>gi|323495642|ref|ZP_08100713.1| type II secretion system protein F [Vibrio sinaloensis DSM 21326]
 gi|323319277|gb|EGA72217.1| type II secretion system protein F [Vibrio sinaloensis DSM 21326]
          Length = 296

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 64/157 (40%), Gaps = 4/157 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +    K R A+     P  LD++   V+ G+ +  A+  +  +     +     + +   
Sbjct: 139 LDSRGKARIARISAQLPYLLDLLAVCVQTGMTIESAMNYLSKEMIGFDKELAGLLKKTNE 198

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +   + + +++  +   +P  E+  F   +    Q G ++   L  L+  +RD + +  +
Sbjct: 199 RSRLVGMQKALDELYEDIPSSEMRSFVMTLKQSLQYGSSIYGVLTTLAGDIRDVQMLGLE 258

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            +   + AK S  +I  +   +  L+    PG + ++
Sbjct: 259 EKIGKLAAKMSVPLILFIMIPIVILIAA--PGILRMM 293


>gi|257388762|ref|YP_003178535.1| type II secretion system protein [Halomicrobium mukohataei DSM
           12286]
 gi|257171069|gb|ACV48828.1| type II secretion system protein [Halomicrobium mukohataei DSM
           12286]
          Length = 807

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 54/143 (37%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L  +R  +     P  L+ +     AG+ V +++  + G     +  E  R+     +
Sbjct: 465 RELYTRRIRRIEASTPELLERLASLNEAGMTVVESLERVRGTDVGALSEEVDRIWADVTM 524

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G ++ ++++R  R +    +S   T++    +  G +   L   +   R    ++ + + 
Sbjct: 525 GANVEDALTRFGRRIRTTSMSRVVTLLINAMRSSGKMGPILRIAADQARSDYRLRRQRRQ 584

Query: 122 LSMEAKASAWIIGSLPFCVSTLV 144
             +      +I   +   +   V
Sbjct: 585 EMLTYLVVIYISFLVFLVIIASV 607



 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/182 (11%), Positives = 53/182 (29%), Gaps = 5/182 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQ 59
           +     R     +     L  +    R G+    A+  +    +       E    +   
Sbjct: 158 RSRAAVRQRAIDEGQGRTLAFLYALSRGGVSFPAALRTLSDNREIYGASAEEVSVAVRQM 217

Query: 60  HLGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            L    +  ++  M    P ++   F+  ++   Q G +LS  L       +D    + +
Sbjct: 218 DLFGQDMITAVRGMAGRTPSEDFQTFAENLASVLQSGRSLSTFLREQYERTKDESERRQE 277

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                +   A A++   +   +  +       +   L +      ++G     +     V
Sbjct: 278 EILEHLATVAEAYVTVLVAAVLFFITILLV--FGLTLADTLVFIQMVGYLMIPLANAGFV 335

Query: 179 MR 180
           + 
Sbjct: 336 LY 337


>gi|332139659|ref|YP_004425397.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein
           MshG (pilus type IV) [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327549681|gb|AEA96399.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein
           MshG (pilus type IV) [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 411

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/173 (10%), Positives = 57/173 (32%), Gaps = 6/173 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRM 72
           D+       +   ++AG+P+  A+  +   +S     E  + + +    G SLS ++ + 
Sbjct: 70  DEMIIFSRQMYSLLKAGIPIIRAIKGLSENASHKRFQEILKDIADQLEQGRSLSSAMVKY 129

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +       +  +  + V  +  G L +    L+      +  + ++Q+           
Sbjct: 130 EK-----VFTRLTISVVVVGENTGKLDDVFLQLALYFEREQETRKRIQSALRYPTFVLIA 184

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           +    F ++  V             +      + +  +   +    + L++  
Sbjct: 185 LAIAMFILNLFVVPVFTQMFERFDTELPIMTRVLIGTSNFFVNYWWLILIVLI 237



 Score = 40.1 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/127 (8%), Positives = 35/127 (27%), Gaps = 5/127 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
                 +RAG+P++  +++      +       + +        + +  S +      + 
Sbjct: 280 RSFSMILRAGVPLTAGLSLTADAVDNAHMQMRIKTMRQ-----GIEKGDSLLRVSKNSEL 334

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
            S     +    +  G L + L   +       +   K     +E     ++   +    
Sbjct: 335 FSTLVLQMIAVGEETGRLEQLLEESADYYEREVDFDLKSLTAKIEPILIGFVAVMVLILA 394

Query: 141 STLVYFT 147
             +    
Sbjct: 395 LGIFTPM 401


>gi|224369331|ref|YP_002603495.1| PilC [Desulfobacterium autotrophicum HRM2]
 gi|223692048|gb|ACN15331.1| PilC [Desulfobacterium autotrophicum HRM2]
          Length = 402

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 57/177 (32%), Gaps = 13/177 (7%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                   + AGLP+   + ++   Q +   +   +++ E+   G + ++++++      
Sbjct: 68  FSRQFSTMIDAGLPLLQCLDILHAQQENVTFKKILKKIKESVESGETFADALAKFPDI-- 125

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               +   T +    + GG L   L  LS  +     +K +V+        +  +   + 
Sbjct: 126 ---FNELFTNMVAAGEAGGILDIILRRLSAYMEKMAKLKKQVKGAMTYPAITLAVAVIVV 182

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-------AFMLIGIMVMRLMINFDV 187
             +   V            +      LL V            +IG  ++   I   V
Sbjct: 183 GIILVFVIPVFAEMFADFGSTLPAPTLLVVFLSEFVINNILYIIGAFIVVTFITRRV 239



 Score = 42.8 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 13/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+ + +A+ ++   +      EF      Q +    S +   +      
Sbjct: 271 FTRTMGTMMSSGVSILEALDIVGKTA-GNKTVEFAIHDVKQGISEGRSMADPLL----ES 325

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G L   L  ++    D  +   K     +E     ++   +  
Sbjct: 326 GVFPSMVCSMIAVGESTGALDNMLGKIADFYDDEVDQAVKTLTDMIEPFMLVFLGVVIGG 385

Query: 139 CVSTLVYFTS 148
            V  +     
Sbjct: 386 LVVAMYLPIF 395


>gi|156744077|ref|YP_001434206.1| type II secretion system protein [Roseiflexus castenholzii DSM
           13941]
 gi|156235405|gb|ABU60188.1| type II secretion system protein [Roseiflexus castenholzii DSM
           13941]
          Length = 309

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 69/158 (43%), Gaps = 1/158 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I +R  + L+  P+ALD++  +  AGL   +A+  I  + ++ +  EF RV+    
Sbjct: 151 LSRRIGQRQTELLNALPDALDLLAIATAAGLSFENAIQEITSKWTNELAREFSRVLRDMS 210

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+   ++++ M     + +++ F + I     LG ++   L   +  +R R+  +A+ +
Sbjct: 211 MGVPRRQALTDMAERTGVPDIASFVSAIKQAEALGVSIGRVLTVQAEEMRTRRRQRAQER 270

Query: 121 ALSMEAKASAW-IIGSLPFCVSTLVYFTSPGYMNVLIN 157
           A     K     +    P   + L+    P  +     
Sbjct: 271 ANQAPVKMMFPLVFLIFPAIFAVLLGPAVPQLLEAFGG 308


>gi|163801672|ref|ZP_02195570.1| hypothetical Flp pilus assembly protein TadC [Vibrio sp. AND4]
 gi|159174589|gb|EDP59391.1| hypothetical Flp pilus assembly protein TadC [Vibrio sp. AND4]
          Length = 280

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 67/159 (42%), Gaps = 4/159 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           ++   K    K     P  LD++   V+ G+ +  A+  +  + ++       ++     
Sbjct: 123 LQMRRKMLIRKTSAQLPYLLDMMSVCVQTGMTIEAALVYLGKELAEFDSDLCYQIKRTSD 182

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
                 L ++++ +   +P   V  F   I    Q G ++++ L++L+  +R  + +  +
Sbjct: 183 SAKIQGLEKALTDLSERIPTPPVRSFVLTIIQNLQHGTSVAQILSDLAEDMRKMQILTVE 242

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
            +   + AK S  +I  + F +  L+   +PG M +  N
Sbjct: 243 EKVGKLSAKMSLPLIIFIMFPIVILI--LAPGIMQMNFN 279


>gi|21673275|ref|NP_661340.1| TadC protein [Chlorobium tepidum TLS]
 gi|21646364|gb|AAM71682.1| TadC protein [Chlorobium tepidum TLS]
          Length = 312

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 63/148 (42%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           M  + KKR  +  +  P+ ++++V    +G+ +  A+A I  +       +  EF     
Sbjct: 151 MDFITKKRVERMRNSLPDMIELMVVCTESGMSIDAAIARISQEMARTHPDLAQEFYLAGL 210

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+  M     L E+    +++    + G +++E+L   S ++R ++  +A
Sbjct: 211 EMRAGATRIDSLRNMALRTSLDELHDLVSMLIQAEKFGTSMAESLRVQSEVMRTKRTQRA 270

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           +  A  +  K    +   +   +  ++ 
Sbjct: 271 EELAAKIPVKLVLPLGLFIFPTLLIVML 298


>gi|127511576|ref|YP_001092773.1| type II secretion system protein [Shewanella loihica PV-4]
 gi|126636871|gb|ABO22514.1| type II secretion system protein [Shewanella loihica PV-4]
          Length = 287

 Score = 72.1 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 3/158 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +  L KKR    +   P  LD +  S+ AGL ++ A++  V +    P+R EF +VI   
Sbjct: 131 LNDLRKKRQGLIVKSLPVYLDYLTMSIEAGLNMTGALSQAVERGPAGPLRIEFEKVIRDM 190

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G+S +++   M   + + EV+   + ++   + G +L + L   S   R  +  +A+ 
Sbjct: 191 RAGMSRAQAFRNMADRVQVTEVNSLVSALAQAERTGASLGQTLRIQSDQRRIERFQRAEK 250

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           +AL    K    +I  +      ++ F  P  M  +  
Sbjct: 251 KALEAPVKLVFPLIVFIFPVTFMILAF--PIAMKFMYE 286


>gi|148657456|ref|YP_001277661.1| type II secretion system protein [Roseiflexus sp. RS-1]
 gi|148569566|gb|ABQ91711.1| type II secretion system protein [Roseiflexus sp. RS-1]
          Length = 309

 Score = 72.1 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 68/158 (43%), Gaps = 1/158 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R  + L+  P+ALD++  +  AGL    A+  I  + ++ +  EF RV+    
Sbjct: 151 LSRRIRQRQTELLNALPDALDLLAIASAAGLSFESAMQEITSKWTNELAREFSRVLRDMS 210

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+   ++++ M     + +++ F + +     LG ++   L   +  +R R+  +A+ +
Sbjct: 211 MGVPRRQALTDMAERTGVSDIASFVSAVKQAEALGISIGRVLTVQADEMRTRRRQRAQER 270

Query: 121 ALSMEA-KASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           A           +    P   + L+    P  +     
Sbjct: 271 ANQAPVKMMFPLVFLIFPAIFAVLLGPAVPQLLEAFGG 308


>gi|167006300|ref|YP_001661523.1| integral membrane protein [Streptomyces sp. HK1]
 gi|166162382|gb|ABY83503.1| integral membrane protein [Streptomyces sp. HK1]
          Length = 304

 Score = 72.1 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/184 (10%), Positives = 57/184 (30%), Gaps = 4/184 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
              +R  +        L+ +    +AG+ +   +      +  P+    R + +    G+
Sbjct: 104 AASQRIERLE-ALAQWLNHLAGVHQAGISLPQTIRASAKAAPGPIAPNVRALADRLRSGM 162

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAKVQAL 122
              ++ +     +          +    +      LS+AL  L+  +  +      ++A 
Sbjct: 163 EAEDAFAHFADELADGVADHVVLLFQSHAVYKGPGLSDALEALAVTIHQQAADARDIEAD 222

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
             + + S+ ++         +V        +     P G ++L +        +  +R +
Sbjct: 223 RAKVRKSSRMVSM--VICLVVVGCMLNDAWSGWYKTPLGQLVLALLGGAFAWTLTWLRRI 280

Query: 183 INFD 186
               
Sbjct: 281 ARTK 284


>gi|310822671|ref|YP_003955029.1| type II secretion system protein f domain-containing protein
           [Stigmatella aurantiaca DW4/3-1]
 gi|309395743|gb|ADO73202.1| Type II secretion system protein F domain protein [Stigmatella
           aurantiaca DW4/3-1]
          Length = 296

 Score = 72.1 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 70/162 (43%), Gaps = 3/162 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQ 59
           +   +K+R        P  LD++  SV AGL  + A++ +V +  S P++ E   V++  
Sbjct: 137 VNDQVKRRHLAISRALPYNLDLLTLSVEAGLDFTAALSKVVEKGKSGPLKEEMSIVLKQL 196

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            +G +  E++  M+  + L  ++ F T +    ++G +L + L   S  +R  +  +A+ 
Sbjct: 197 KMGKTREEALKAMILRVDLPSLTTFVTALIQADKMGTSLGKVLRIQSTQMRIDRTQRAEK 256

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
            A     K    +I  +   V   +    P     +  +  G
Sbjct: 257 LAGEAPVKMLFPLIACIFPTVF--MVLFGPIVFQFMFGNVGG 296


>gi|227114881|ref|ZP_03828537.1| putative type IV pilus protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 319

 Score = 72.1 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +K     R  K     P+ALD++V    AGLP+   + V+  +   SS  +  E      
Sbjct: 159 LKWRAASRGEKLACAVPDALDLMVVCAEAGLPIGRVLQVVSKELGLSSPEMADELHYTAA 218

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +    + ++  +     + E+      +    + G  LS+AL  ++   R    +  
Sbjct: 219 ELQILSDRTLAMKHLAERTRVSEIESMVATLIQAERYGTPLSQALRTIADESRKTLILSL 278

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +A  + A+ S  ++  +   +  ++
Sbjct: 279 EEKAGKLPAQLSVPLMALILPPIIAIM 305


>gi|323702118|ref|ZP_08113786.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
           574]
 gi|323533000|gb|EGB22871.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
           574]
          Length = 310

 Score = 72.1 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 71/155 (45%), Gaps = 2/155 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R  +     P+ALD++  SV AGL    A+  +  QS+  +  EF  +++  H
Sbjct: 153 LNARIRQRKNQVEKALPDALDLLTVSVEAGLGFDCALMKVAEQSNSVLADEFVLMMQECH 212

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G    E++  M   + + ++S F   I +   LG ++   L   S+ +R ++  + +  
Sbjct: 213 MGKPRREALRDMADRVDVDDLSTFCGSIILADTLGISIGNILRTQSQQIRQKRRQRTEEL 272

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           A+    K    ++  +   +  ++    P  + ++
Sbjct: 273 AMKAPIKMLFPMVLFIFPAIFVIL--LGPAALQIM 305


>gi|285017460|ref|YP_003375171.1| fimbrial assembly protein [Xanthomonas albilineans GPE PC73]
 gi|283472678|emb|CBA15183.1| probable fimbrial assembly protein [Xanthomonas albilineans]
          Length = 423

 Score = 72.1 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 55/173 (31%), Gaps = 6/173 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +++G+P+  ++ +I  G  +  ++    ++      G SL E+ISR 
Sbjct: 83  KDIAFFSRQMATMMKSGVPIVGSLEIIASGHKNPRMKKMVEQIRTDIEGGSSLYEAISRH 142

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L  ++    + + +K K++           +
Sbjct: 143 PVQ-----FDELYRNLVKAGEGAGVLETVLETVATYKENIEALKGKIKKALFYPAMVMAV 197

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              +   +   V                    + V A+  ++    M L++  
Sbjct: 198 AVIVSCILLVWVVPQFEDVFKGFGAQLPAFTQMIVTASRFMVAYWWMMLIVVI 250



 Score = 38.6 bits (88), Expect = 0.46,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 38/130 (29%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +  + RAG+P+ +A+ ++ G + + V  +    +              +     P 
Sbjct: 292 FSRTLAVTFRAGVPLVEALDIVAGATGNSVYEKSVLRMRDDVAVGYPVNVAMKQTNLFPH 351

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    ++   +  G L   L  ++       N      +  ME     +I   +  
Sbjct: 352 -----MVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLMEPLIMVFIGTIVGG 406

Query: 139 CVSTLVYFTS 148
            V  +     
Sbjct: 407 MVIGMYLPIF 416


>gi|76802097|ref|YP_327105.1| transmembrane protein (type II secretion system proteins TadC)
           [Natronomonas pharaonis DSM 2160]
 gi|76557962|emb|CAI49546.1| transmembrane protein (homolog 3 to type II secretion system
           proteins TadC) [Natronomonas pharaonis DSM 2160]
          Length = 672

 Score = 72.1 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 58/134 (43%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R  K  + FP+ L+I+  + + G+P+ +A+ ++   S   +  E R V     
Sbjct: 443 LYERERRREQKINERFPDTLNILSSANQMGIPLVEALNLVSRWSEGVLGKELRMVRNDIR 502

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
               +  S+ +    + + +V+    +++  +    +LS+ ++  +   R+R  ++ K +
Sbjct: 503 WNHDVERSLLKFANRLDVPQVTRTMKLLAKGNHASSDLSKIISIAAEDTRNRYEIERKRR 562

Query: 121 ALSMEAKASAWIIG 134
                  A   I  
Sbjct: 563 NEMNAYMAIVIIGF 576



 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/180 (10%), Positives = 52/180 (28%), Gaps = 6/180 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQH 60
                R        P+A+  +      G+   + +  +    +    V  EF  ++    
Sbjct: 144 FRKDTRKRNIDVMLPHAIVYMYALSHGGMNTFEVMEELAEADEVYGAVSDEFDMIVRDVE 203

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           L    L  ++       P + +  F          G + S  L + +    +    + + 
Sbjct: 204 LFGNDLFAALRDARNLTPSENLEQFLDDTISVVDSGSDFSAFLEDEAETYMEEAREEQEN 263

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
              ++   +  +I+  +   +  +V       + +L           +     L  ++ +
Sbjct: 264 FLSTLSILSEIYIVVFVAAPLFVIVMLL---MVTLLGGGAIAMAQFIIYLCLPLAMLLFI 320


>gi|327479617|gb|AEA82927.1| type 4 pilus biogenesis protein PilC [Pseudomonas stutzeri DSM
           4166]
          Length = 405

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/166 (10%), Positives = 49/166 (29%), Gaps = 6/166 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   ++AG+P+  +  +I        +R     + +    G S + ++ +  
Sbjct: 67  DIALFTRQMATMMKAGVPLLQSFDIIGEGFDNPNMRKLVDDLKQEVAAGNSFATALRKKP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           +             +    +  G L   L  ++      + +KAK++       A   + 
Sbjct: 127 Q-----YFDDLYCNLVDSGEQSGALETLLDRVATYKEKTEALKAKIKKAMNYPIAVLMVA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             +   +   V             +     L+ +  +  L     +
Sbjct: 182 IIVSAILLIKVVPQFQEVFANFGAELPAFTLMVIGLSEALQEWWFI 227



 Score = 40.1 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +  +  AG+P+ DA+  + G + + V         T  +   +S  +         
Sbjct: 275 FARTLSTTFAAGVPLVDALDSVAGATGNVVFR-----SATMKVKNDVSTGMQLNFSMRTT 329

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                 +  ++   +  G+L E LA ++    D  +         ME    A +   +  
Sbjct: 330 GTFPTMAVQMTAIGEESGSLDEMLAKVATFYEDEVDNMVDSLTSLMEPMIMAVLGVLVGG 389

Query: 139 CVSTLVYFTS 148
            +  +     
Sbjct: 390 LIIAMYLPIF 399


>gi|227326306|ref|ZP_03830330.1| putative type IV pilus protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 319

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +K     R  K     P+ALD++V    AGLP+   + V+  +   SS  +  E      
Sbjct: 159 LKWRAASRGEKLARAVPDALDLMVVCAEAGLPIGRVLQVVSKELGLSSPEMADELHYTAA 218

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +    + ++  +     + E+      +    + G  LS+AL  ++   R    +  
Sbjct: 219 ELQILSDRTLAMKHLAERTRVSEIESMVATLIQAERYGTPLSQALRTIADESRKTLILGL 278

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +A  + A+ S  ++  +   +  ++
Sbjct: 279 EEKAGKLPAQLSVPLMALILPPIIAIM 305


>gi|269960464|ref|ZP_06174836.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834541|gb|EEZ88628.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 314

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 63/148 (42%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++ +I KR        P+ LD++V    +GL  + A+  +  +   S   +  E   V  
Sbjct: 155 LRRMIDKRQRAIRAGVPDMLDLLVVCTESGLGFNAALRRVADELVISHPELADEVDTVCN 214

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G  + E++  +V    L E+    +++S  S++GG+L  +L   +   RD++   A
Sbjct: 215 KIQAGKPMPEALRELVYRTGLDELMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAA 274

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           +  A  +  K    ++  +  C   +  
Sbjct: 275 EEMAAKIPVKMMFPMVLFIWPCFFIVAI 302


>gi|289209345|ref|YP_003461411.1| type II secretion system F domain protein [Thioalkalivibrio sp.
           K90mix]
 gi|288944976|gb|ADC72675.1| Type II secretion system F domain protein [Thioalkalivibrio sp.
           K90mix]
          Length = 403

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/181 (9%), Positives = 55/181 (30%), Gaps = 8/181 (4%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66
           +      D    L  +   +++G+P+  A  ++   +    +R    ++      G + +
Sbjct: 58  KKKIVPADIAYFLRQMTTMLQSGVPLVQAFEIVGRGNEKPAMRDLVLKLKADVEGGETFA 117

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++++  +             +    +  G L   L  ++      + +KAK++      
Sbjct: 118 AALAKQPK-----YFDDLVVNLVEAGEQAGTLETLLDKVATYKEKTEALKAKIRKAMFYP 172

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
            A   +   +   +   V             D      + V  +  +     +  ++   
Sbjct: 173 AAVVVVAIVVTAILLIYVVPQFESLFQGFGADLPVFTRMVVDLSGFVQSWWWL--ILAIM 230

Query: 187 V 187
           V
Sbjct: 231 V 231



 Score = 40.9 bits (94), Expect = 0.086,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 41/142 (28%), Gaps = 11/142 (7%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLS 66
           R A            +     AG+P+ DA+  + G + + +  E   R+ +    G  L 
Sbjct: 266 RKAAIAR----FARTLSTMFSAGVPLVDALTSVSGATGNALYREATLRMRDETSAGAQLQ 321

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            S+                  +    +  G+L   LA ++       +      +  +E 
Sbjct: 322 WSMRNTG------VFPNMVVQMVAIGEESGSLDSMLAKVADFYEAEVDNAVDSLSSLLEP 375

Query: 127 KASAWIIGSLPFCVSTLVYFTS 148
                +   +   V  +     
Sbjct: 376 LIMVVLGVLVGGLVIAMYLPIF 397


>gi|260775648|ref|ZP_05884544.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608064|gb|EEX34233.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio coralliilyticus ATCC BAA-450]
          Length = 292

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 66/159 (41%), Gaps = 4/159 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE--FRRVIET 58
           ++H  K    K  +  P  LD++   V+ G+ V  ++  +  + S   +       ++  
Sbjct: 134 LEHRRKVLQDKISNQLPYLLDLMAMCVQTGMTVEASIQYLSSELSALDKDLGHTMNIVNE 193

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +   + L +++  + +  P  EV  F   +    + G  +   L NL+  +R+ + +  +
Sbjct: 194 RSRLVGLDQALDELYQRFPATEVRSFVMTLKQSLRYGSAIYSVLNNLASDIREVRVLALE 253

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
            +   + AK S  +I  +   +  L+    PG M ++  
Sbjct: 254 EKIGKLSAKMSVPLILFILIPIVILIAA--PGIMRLMYG 290


>gi|87309116|ref|ZP_01091253.1| type IV fimbrial assembly protein PilC [Blastopirellula marina DSM
           3645]
 gi|87288107|gb|EAQ80004.1| type IV fimbrial assembly protein PilC [Blastopirellula marina DSM
           3645]
          Length = 466

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 55/166 (33%), Gaps = 6/166 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISR 71
                     +     AGLP+  ++ ++  QS    +++    V E    G  LSE++S+
Sbjct: 70  SRQLTTFTRQLAILQNAGLPILRSLKILEKQSKPGRLKNSLMDVCEDIESGAGLSEAMSK 129

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +       +     +    + GG L   L  L+  +   +++K KV+   +       
Sbjct: 130 CPKC-----FNRLYVNMIKAGEAGGALEVILLRLADFMERDEDLKRKVKGAMIYPAVVIT 184

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +   +   +   +        +    D      L +  +  ++   
Sbjct: 185 VAVGILTFIMIKIVPVFKTIFDDFELDLPPPTQLLITMSTAIVNYW 230


>gi|269966900|ref|ZP_06180973.1| putative tight adherence TadC-related transmembrane protein [Vibrio
           alginolyticus 40B]
 gi|269828567|gb|EEZ82828.1| putative tight adherence TadC-related transmembrane protein [Vibrio
           alginolyticus 40B]
          Length = 313

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 68/157 (43%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++ ++ KR        P+ LD++V    +GL  + A+  +  +   S   +  E   V  
Sbjct: 153 LRRMVNKRQQAIRAGVPDMLDLLVVCTESGLGFNAALRRVADELVISHPELADEIDTVCN 212

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G  + E++  +V    L+E+    +++S  S++GG+L  +L   +   RD++   A
Sbjct: 213 KIKAGKPMPEALRELVLRTGLEELMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAA 272

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +  A  +  K    ++  +  C    +    P  +++
Sbjct: 273 EEIAAKIPVKMMFPMVLFIWPC--FFIVAIGPALISL 307


>gi|116748937|ref|YP_845624.1| type II secretion system protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698001|gb|ABK17189.1| type II secretion system protein [Syntrophobacter fumaroxidans
           MPOB]
          Length = 319

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 68/158 (43%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           ++    +R  +     P+ALD++V  V AG+ +  A   +  +    + P+  E + +  
Sbjct: 159 LRLKTSRRRKQLRRGLPDALDLMVVCVEAGMGIDSATYRVSEEMKLTNAPMSDELKYLNL 218

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +++  +     L++V+  +T++    + G ++++AL   S   R +++  A
Sbjct: 219 ELRAGKARRDALRNLALRTDLEDVNSLTTLLIQTDKFGTSVAQALRVHSDSFRTKRHQMA 278

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  A  +  K    +I  +   +  ++    P  +   
Sbjct: 279 EELAAKLPVKLVLPLILFIFPSLFVVI--MGPAMIRAF 314


>gi|253574465|ref|ZP_04851806.1| type II secretion system protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251846170|gb|EES74177.1| type II secretion system protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 410

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 51/159 (32%), Gaps = 6/159 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
            + F          ++AG+ + +A A++  QS   P++     V      G +LS +++ 
Sbjct: 70  NEQFVVFCRQFATMIKAGISIVEATAILAEQSESKPLKKTLAEVTAELRKGNTLSGAVAA 129

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             R  P          +    +  G++ E L  L+         + KV++        + 
Sbjct: 130 YPRIFP-----SIFVHMVRAGEEAGSMEETLERLAVYFEKAHVTREKVKSAMTYPLIVSV 184

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           +   +   +   +          L  D        +  +
Sbjct: 185 MAVFVIIFLLKFMIPRFQAMFAELGGDLPAITRFTLTLS 223


>gi|167957566|ref|ZP_02544640.1| pilin biogenesis protein [candidate division TM7 single-cell
           isolate TM7c]
          Length = 410

 Score = 71.7 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 57/171 (33%), Gaps = 9/171 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISR 71
            D+       +   + AG+P++ ++  +   + +PV  +    V      G+SL++++ +
Sbjct: 65  QDELSIFTRQLSTMINAGVPLTRSLNSLQEHTENPVFRDTLDSVKGDVESGVSLADALGK 124

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +       S     +    +  G L E L  L+        ++ K+++          
Sbjct: 125 HPK-----VFSDIYVNMVRAGEAAGILDEVLNRLAVQQEKSATIRKKIKSAMTYPVVLVV 179

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG---VAAAFMLIGIMVM 179
           I     F +   V       +  L        L+    +  +  +I    +
Sbjct: 180 ISVLAFFGLMIFVIPKIGQIIIDLGGPDAELPLITKIMLGISNFIISFWYI 230



 Score = 34.3 bits (77), Expect = 7.7,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 6/130 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
                   + AG+ V +A+++      + V     +        G  LS  I       P
Sbjct: 277 FARTYASLIGAGVSVIEALSITSRAVGNKVYESTLQEACIRLENGEQLSRIIEEKSDLFP 336

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G     LA ++    +  +   +  +  +E     ++ G + 
Sbjct: 337 -----SILAQMLAVGEETGQTDTVLAKVADFYEEEVDTAIESISSIIEPVMIVFMGGMVG 391

Query: 138 FCVSTLVYFT 147
              ++++   
Sbjct: 392 LIAASVMLPI 401


>gi|77461042|ref|YP_350549.1| type II secretion system protein [Pseudomonas fluorescens Pf0-1]
 gi|77385045|gb|ABA76558.1| type 4 pilus biogenesis protein PilC [Pseudomonas fluorescens
           Pf0-1]
          Length = 405

 Score = 71.7 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/173 (12%), Positives = 55/173 (31%), Gaps = 8/173 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65
           KR      D       +   ++AG+P+  +  +I     +P +R     V +    G S 
Sbjct: 61  KRIKA--QDIALFTRQMATMMKAGVPLLQSFDIIGEGFENPAMRKLVDEVKQEVAAGNSF 118

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           + ++ +  +             +    +  G L   L  ++      +++KAK++     
Sbjct: 119 AAALRKKPQ-----YFDELYCNLVDAGEQSGALDTLLERVATYKEKSESLKAKIKKAMTY 173

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             A   +   +   +   V        +    +     L+ ++ +  +     
Sbjct: 174 PSAVVLVAAVVTGILLVKVVPQFQSVFSGFGAELPAFTLMVISLSEFMQQWWW 226



 Score = 40.1 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 42/131 (32%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +  +  AG+P+ +A+  + G + + V      R+ +    G+ L+ S+        
Sbjct: 275 FARTLSTTFAAGVPLVEALDSVAGATGNVVFKRAVLRIRQDVSTGMQLNFSMRSTG---- 330

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +  ++   +  G L E L  ++    D  +         ME      +   + 
Sbjct: 331 --IFPNMAVQMTAIGEESGALDEMLDKVAGFYEDEVDNMVDNLTSLMEPFIMVVLGVIVG 388

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 389 GLVVAMYLPIF 399


>gi|303248308|ref|ZP_07334570.1| Type II secretion system F domain protein [Desulfovibrio
           fructosovorans JJ]
 gi|302490333|gb|EFL50245.1| Type II secretion system F domain protein [Desulfovibrio
           fructosovorans JJ]
          Length = 314

 Score = 71.7 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 67/161 (41%), Gaps = 3/161 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   +KKR    L   P+ALD++V  V AG+ +  A+  +  +       + SE R +  
Sbjct: 151 LDSRVKKRQKAILHGLPDALDLLVVCVEAGMGLDAAIYRVCLEMTHKEPILSSELRLLTL 210

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S  E++  +   + L+++     ++      G ++++ L   +  +R ++   A
Sbjct: 211 ELRAGKSRREALKNLSNRVGLEDMGSLVAMLIQTDMFGTSIAQTLRVYADSMRTKRFQLA 270

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158
           +  A  +  K    ++  +   +  ++   +   +  + + 
Sbjct: 271 EELAAKLPVKLLFPLVLFIFPTLLIVILGPAGISLMRMFSS 311


>gi|317122043|ref|YP_004102046.1| type II secretion system F domain [Thermaerobacter marianensis DSM
           12885]
 gi|315592023|gb|ADU51319.1| Type II secretion system F domain [Thermaerobacter marianensis DSM
           12885]
          Length = 331

 Score = 71.7 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 66/143 (46%), Gaps = 2/143 (1%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
               P+ +D++  SV AGL    A+  +  +   PV +EFR+ ++   LG+   E++  +
Sbjct: 186 ARALPDVMDLLSVSVEAGLGFDGAIQKVSEKFPAPVSTEFRQYLKELRLGVEREEALRSL 245

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                L E+  F+  +    +LG +L+  L   +  LR ++  +A+ QA+    K    +
Sbjct: 246 ADRCELPELRSFAAAVIQADRLGVSLARVLRVQAEQLRFQRKQRAEEQAMKTPIKMLLPL 305

Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155
           +  +   +  ++    P  + +L
Sbjct: 306 VLFIFPTLFIVL--LGPALIQIL 326


>gi|297564240|ref|YP_003683213.1| Type II secretion system F domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296848689|gb|ADH70707.1| Type II secretion system F domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 211

 Score = 71.7 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 58/166 (34%), Gaps = 11/166 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
              ++   +RAG P  +A+ +   ++   V S        +              R   L
Sbjct: 51  LCRVLAAELRAGQPPEEALRISAAEAGPLVGSLTDAASLRREAE-----------REPDL 99

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
             +++ +    V +  G  L+E +  L+  L +++  + +  A +   + +A ++ +LP 
Sbjct: 100 WALAYLAVCWEVAADTGAGLAEVVDALAANLTEQEEQRTEAAARTTGPRTTAIVLAALPA 159

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
               L        +  L   P G   L    A   +G      M+ 
Sbjct: 160 VGLLLSSGLGGSPLVFLFTTPLGLACLVGGVALDALGTWWTLRMVR 205


>gi|241664635|ref|YP_002982995.1| general secretion pathway protein F [Ralstonia pickettii 12D]
 gi|240866662|gb|ACS64323.1| general secretion pathway protein F [Ralstonia pickettii 12D]
          Length = 403

 Score = 71.7 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 64/181 (35%), Gaps = 14/181 (7%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65
           KR +   +        +   + AGLP+ +A+A +  Q+    V      +      G SL
Sbjct: 59  KRLSAQENAL--VTRQLASLLVAGLPLDEALAALADQAERAYVGELLAAIRAEVVGGSSL 116

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S ++++  +     +       +    +  GNL   L+ L+  +  R  + +K++     
Sbjct: 117 SVALAQHPK-----DFPDIYRALVSAGEHSGNLGLVLSRLADYIESRNALTSKIKLAFTY 171

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF---MLIGIMVMRLM 182
                 +       V  L+ +  P  ++V  N  +    L +   +    +     +  +
Sbjct: 172 PA---IVTVVAFAIVIFLLSYVVPQVVSVFANTKQKLPTLTIIMLWLSDFVRNWGWLAAI 228

Query: 183 I 183
           +
Sbjct: 229 V 229


>gi|190575612|ref|YP_001973457.1| putative pilus-assembly protein [Stenotrophomonas maltophilia
           K279a]
 gi|190013534|emb|CAQ47169.1| putative pilus-assembly protein [Stenotrophomonas maltophilia
           K279a]
          Length = 419

 Score = 71.7 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/173 (10%), Positives = 54/173 (31%), Gaps = 6/173 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +++G+P+  A+ +I  G  +  ++     +      G S+ E++S+ 
Sbjct: 79  KDIAFFSRQMATMMKSGVPIVSALDIIASGHKNPRMKKLVDTIRTDIEGGSSMYEAVSKH 138

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L  ++    + + +K K++           +
Sbjct: 139 PVQ-----FDELYRNLVRAGEGAGVLETVLDTVATYKENIEALKGKIKKALFYPIMVVVV 193

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              +   +   V             +      + V  +  ++    + L+I  
Sbjct: 194 AMLVSGIMLVFVVPQFEDVFKSFGAELPAFTQMVVNLSRFMVSWWWLMLLIAI 246



 Score = 35.9 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/136 (11%), Positives = 37/136 (27%), Gaps = 5/136 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                        + +AG+P+ +A+ ++ G + + V  E    +              + 
Sbjct: 282 NSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNTVYEEAVLRMRDDVSVGYPVNMSMKQ 341

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P          ++   +  G L   L  ++       N      +  +E     +I
Sbjct: 342 TNLFPH-----MVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNSVDALSSLLEPMIMVFI 396

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V  +     
Sbjct: 397 GTIVGGMVIAMYLPIF 412


>gi|224823845|ref|ZP_03696954.1| type II secretion system protein [Lutiella nitroferrum 2002]
 gi|224604300|gb|EEG10474.1| type II secretion system protein [Lutiella nitroferrum 2002]
          Length = 408

 Score = 71.7 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 56/183 (30%), Gaps = 11/183 (6%)

Query: 3   HLIKKRTAKF-----LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVI 56
             +KKR A F       D       +   ++AG+P+  +  +     S+  V      V 
Sbjct: 52  QKLKKRKAGFGKRITDRDITLFTRQLATMMKAGVPLLQSFDISAKGHSNPAVTKMLLEVR 111

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
                G+SL+E+  +                +    + GG L   L  L+        +K
Sbjct: 112 ADVETGMSLAEAFRKRPL-----YFDKLFCNLIAAGETGGVLDSLLDKLATYREKIMAIK 166

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            K+++  +   A       +   +   V        +    D     LL +  +   +  
Sbjct: 167 GKIKSAMIYPSAIIATAFIITTIIMLYVIPAFKDLFSSFGADLPAPTLLVIWLSDAFVKF 226

Query: 177 MVM 179
             +
Sbjct: 227 WWL 229



 Score = 42.4 bits (98), Expect = 0.030,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 45/129 (34%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +     AG+P+ +A+  + G S + V +E  +R+     +G SLS ++ R        
Sbjct: 279 RTLATMFTAGVPLVEALDSVGGASGNQVYAEATKRIQAEVSIGSSLSFAMQR------TN 332

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                   ++   +  G+L   L  ++    +  +      +  ME      +   +   
Sbjct: 333 LFPNMVMQMTAIGEESGSLDHMLDKVADFYEEEVDNAVAAMSSLMEPVIMIVLGVLIGGL 392

Query: 140 VSTLVYFTS 148
           V  +     
Sbjct: 393 VVAMYMPIF 401


>gi|146281442|ref|YP_001171595.1| type 4 pilus biogenesis protein PilC [Pseudomonas stutzeri A1501]
 gi|145569647|gb|ABP78753.1| type 4 pilus biogenesis protein PilC [Pseudomonas stutzeri A1501]
          Length = 405

 Score = 71.7 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/166 (10%), Positives = 50/166 (30%), Gaps = 6/166 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   ++AG+P+  +  +I        +R     + +    G S + ++ +  
Sbjct: 67  DIALFTRQMATMMKAGVPLLQSFDIIGEGFDNPNMRKLVDDLKQEVAAGNSFATALRKKP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           +             +    +  G+L   L  ++      + +KAK++       A   + 
Sbjct: 127 Q-----YFDDLYCNLVDSGEQSGSLETLLDRVATYKEKTEALKAKIKKAMNYPIAVVLVA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             +   +   V             +     L+ +  +  L     +
Sbjct: 182 IIVSAILLIKVVPQFQEVFANFGAELPAFTLMVIGLSEALQEWWFI 227



 Score = 40.5 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +  +  AG+P+ DA+  + G + + V         T  +   +S  +         
Sbjct: 275 FARTLSTTFAAGVPLVDALDSVAGATGNVVFR-----SATMKVKSDVSSGMQLNFSMRTT 329

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                 +  ++   +  G+L E LA ++    D  +         ME    A +   +  
Sbjct: 330 GTFPTMAVQMTAIGEESGSLDEMLAKVATFYEDEVDNMVDSLTSLMEPMIMAVLGVLVGG 389

Query: 139 CVSTLVYFTS 148
            +  +     
Sbjct: 390 LIIAMYLPIF 399


>gi|21222912|ref|NP_628691.1| integral membrane protein [Streptomyces coelicolor A3(2)]
 gi|7242744|emb|CAB77318.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
          Length = 345

 Score = 71.7 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/174 (10%), Positives = 61/174 (35%), Gaps = 2/174 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +   +  + +  ++   + +  A+      ++  +R     +++       L +++  + 
Sbjct: 122 EALASWTESLRDTIAGAVGLEQAIPASARAAAPVLRPHLDALVDRLRSRTPLPDALQHLA 181

Query: 74  RYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + +     G  L + L  L++  R+  +M+ +V A     + S  I
Sbjct: 182 DEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQRASTRRSVQI 241

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + ++       +   +  ++      P G ++L        +G   +R +   +
Sbjct: 242 VVAVSVLFVLGLSIFNRDFVEP-YGSPVGQLVLVCVCGLFALGFWWLRKLSTIE 294


>gi|290957844|ref|YP_003489026.1| type II secretion system F protein [Streptomyces scabiei 87.22]
 gi|260647370|emb|CBG70475.1| putative type II secretion system F protein [Streptomyces scabiei
           87.22]
          Length = 300

 Score = 71.7 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 60/144 (41%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   +++R        P+ LD++   V AGL    A+  +  +   P   E R  +    
Sbjct: 139 IWQAVRERKDVIDRTLPDFLDVLAVVVSAGLGFRQALDRVAEKYEGPWADELRITLRQMD 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+S  ++   + R    ++V+ F + +    +LG  ++E L  L+  +R      A+ +
Sbjct: 199 MGVSRRQAFDELRRRNTSEQVAQFVSALQQGEELGSPIAETLIQLAADMRRTDAQNARRR 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144
           A     KA+   +  +      L+
Sbjct: 259 AARTIPKATLVTLVFMLPATMILI 282


>gi|291279501|ref|YP_003496336.1| type IV pilus assembly protein PilC [Deferribacter desulfuricans
           SSM1]
 gi|290754203|dbj|BAI80580.1| type IV pilus assembly protein PilC [Deferribacter desulfuricans
           SSM1]
          Length = 402

 Score = 71.7 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 52/160 (32%), Gaps = 6/160 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           A   +   + AGLP+  A+ +I  Q+     R  F  + E    G S S ++ +      
Sbjct: 65  ATRQLATMINAGLPIVRALDIISAQTPKKKFRKIFLEIKEDIEQGQSFSRALEKHKNIFG 124

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    + GG L + L  LS+ +    ++K KV++  M       +   + 
Sbjct: 125 -----DLYINMVAAGEAGGLLDDILDRLSQYMEKAISLKRKVKSAMMYPSIVLIVAVLVV 179

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           + +   +                      +A +  L    
Sbjct: 180 WGLMVFIIPKFKEMYEGFGGQLPALTQFTIAMSNFLSSWY 219



 Score = 39.7 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/134 (9%), Positives = 40/134 (29%), Gaps = 5/134 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                       + +G+ + DA+ ++   S + V  +           + +    + +  
Sbjct: 267 AISKFARTFGTLLSSGVAILDALDIVAKTSGNKVIEKHLL-----KSKVDIEAGKTVVQP 321

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                      T +    +  G L + L  ++    D  +   +     +E     ++ G
Sbjct: 322 LEKAGVFPPMVTQMIAVGEETGALDKMLTKIADFYDDEVDRTVEGLTKMIEPMLMIFVGG 381

Query: 135 SLPFCVSTLVYFTS 148
           ++ F +  +     
Sbjct: 382 AVGFVIIAMYLPIF 395


>gi|213970187|ref|ZP_03398318.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
           tomato T1]
 gi|301385925|ref|ZP_07234343.1| type II secretion system protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|302063132|ref|ZP_07254673.1| type II secretion system protein [Pseudomonas syringae pv. tomato
           K40]
 gi|302134158|ref|ZP_07260148.1| type II secretion system protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213925068|gb|EEB58632.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
           tomato T1]
          Length = 405

 Score = 71.7 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/172 (11%), Positives = 55/172 (31%), Gaps = 7/172 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMV 73
           D       +   ++AG+P+  +  +I   + +P        + +    G S + ++ +  
Sbjct: 67  DIAFFSRQMATMMKAGVPLLQSFDIISEGAENPNMRSLVNSLKQEVSAGNSFATALRQKP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
            +            +    +  G L   L  ++      + +KAK++       A   + 
Sbjct: 127 EH-----FDDLFCNLVDAGEQAGALESLLDRVATYKEKTEKLKAKIKKAMTYPAAVLIVA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             +   +   V             +     L+ ++    +I    + +++ F
Sbjct: 182 VIVSGILLIKVVPQFQSVFAGFGAELPMFTLMVISL-SEVIQQWWIAIVVAF 232



 Score = 40.5 bits (93), Expect = 0.100,   Method: Composition-based stats.
 Identities = 15/128 (11%), Positives = 37/128 (28%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +  +  AG+P+ +A+  + G + + V            +   +S  +           
Sbjct: 277 RTLATTFSAGVPLVEALESVAGATGNVVFK-----NAVHKVKQDVSTGMQLNFSMRSTGV 331

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
               +  ++   +  G L   L  ++    D  +         ME    A +   +   V
Sbjct: 332 FPSLAIQMTAIGEESGALDSMLDKVATYYEDEVDNMVDSLTSLMEPMIMAILGVVVGGLV 391

Query: 141 STLVYFTS 148
             +     
Sbjct: 392 IAMYLPIF 399


>gi|289769864|ref|ZP_06529242.1| integral membrane protein [Streptomyces lividans TK24]
 gi|289700063|gb|EFD67492.1| integral membrane protein [Streptomyces lividans TK24]
          Length = 330

 Score = 71.7 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/174 (10%), Positives = 61/174 (35%), Gaps = 2/174 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +   +  + +  ++   + +  A+      ++  +R     +++       L +++  + 
Sbjct: 107 EALASWTESLRDTIAGAVGLEQAIPASARAAAPVLRPHLDALVDRLRSRTPLPDALQHLA 166

Query: 74  RYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + +     G  L + L  L++  R+  +M+ +V A     + S  I
Sbjct: 167 DEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQRASTRRSVQI 226

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + ++       +   +  ++      P G ++L        +G   +R +   +
Sbjct: 227 VVAVSVLFVLGLSIFNRDFVEP-YGSPVGQLVLVCVCGLFALGFWWLRKLSTIE 279


>gi|330900441|gb|EGH31860.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 405

 Score = 71.7 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/165 (11%), Positives = 52/165 (31%), Gaps = 6/165 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMV 73
           D       +   ++AG+P+  +  +I   + +P        + +    G S + ++ +  
Sbjct: 67  DIAFFSRQMATMMKAGVPLLQSFDIISEGAENPNMRTLVVSLKQEVSAGNSFATALRQKP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
            +            +    +  G L   L  ++      + +KAK++       A   + 
Sbjct: 127 EH-----FDELFCNLVDAGEQAGALESLLDRVATYKEKTEKLKAKIKKAMTYPTAVLVVA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             +   +   V        +    D     L+ +A +  +    +
Sbjct: 182 VIVSGILLIKVVPQFQTVFSSFGADLPLFTLMVIALSEFVQQWWL 226



 Score = 40.1 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/128 (11%), Positives = 37/128 (28%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +  +  AG+P+ +A+  + G + + V            +   +S  +           
Sbjct: 277 RTLATTFSAGVPLVEALDSVAGATGNVVFR-----NAVHKVKQDVSTGMQLNFSMRSTGV 331

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
               +  ++   +  G L   L  ++    D  +         ME    A +   +   V
Sbjct: 332 FPSLAIQMTAIGEESGALDSMLDKVATYYEDEVDNMVDSLTSLMEPMIMAVLGVIVGGLV 391

Query: 141 STLVYFTS 148
             +     
Sbjct: 392 IAMYLPIF 399


>gi|322434108|ref|YP_004216320.1| Type II secretion system F domain protein [Acidobacterium sp.
           MP5ACTX9]
 gi|321161835|gb|ADW67540.1| Type II secretion system F domain protein [Acidobacterium sp.
           MP5ACTX9]
          Length = 302

 Score = 71.7 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 61/148 (41%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +  ++K R  K     P+ +D++V  V AGL +  A+  +  +   +   +  E  ++  
Sbjct: 139 LSRMVKGRREKIRLSIPDMIDLLVICVDAGLGMDQAMLRVGQELGTTHPQIYEEIMQINR 198

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
            Q  G    ES   M +   L E+  F  ++    + G  ++ AL+     +R ++  +A
Sbjct: 199 EQRAGKLRLESWQAMAQRTQLPEIDGFVNMLMQNERFGTPIARALSTFGDNIRQKRRQRA 258

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           +  A     K    ++  +   +  ++ 
Sbjct: 259 EELAAKTTVKIIFPLVLFIFPSMFIVLL 286


>gi|88856327|ref|ZP_01130986.1| hypothetical protein A20C1_00265 [marine actinobacterium PHSC20C1]
 gi|88814411|gb|EAR24274.1| hypothetical protein A20C1_00265 [marine actinobacterium PHSC20C1]
          Length = 288

 Score = 71.7 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 72/186 (38%), Gaps = 3/186 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    + R       +P+ +D +V +VR+GL + D++  +        RS F        
Sbjct: 97  ISWRARARRTATQIVWPDVVDQLVSAVRSGLALPDSLMTLSQTGPLVTRSAFAAFAARYR 156

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKV 119
              + S ++  +   +           + +  ++GG+ L+  L +LS  LR    +++++
Sbjct: 157 ATGNFSIAVDELKVALADPVADRILETLRMSREVGGSELTNVLRSLSVYLRQEAAIRSEI 216

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +A       +A +  + P+ V  L+  T P       N   G  L+       L+   +M
Sbjct: 217 EARQSWVMNAARLGLAAPWVVLFLLT-TRPEAAAA-YNSASGVALIVAGLILSLVAYRIM 274

Query: 180 RLMINF 185
             +   
Sbjct: 275 AGIGRL 280


>gi|217978831|ref|YP_002362978.1| type II secretion system protein [Methylocella silvestris BL2]
 gi|217504207|gb|ACK51616.1| type II secretion system protein [Methylocella silvestris BL2]
          Length = 320

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 65/143 (45%), Gaps = 3/143 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61
           +++RT       P+AL+++V  V AGL + DA+  +  +   S   +  E        ++
Sbjct: 161 VRRRTKAAAAGLPDALELLVVCVEAGLSLEDALQRVAQELKNSQPALADELTLTWAEINI 220

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
             S  ++++ +   + +  V    ++IS   + G  L+++L   +  +R+ +    + +A
Sbjct: 221 LPSREQALANLADRVNVPTVKSMVSMISQSMRYGTPLAQSLRVGATEMRNDQMTLLEERA 280

Query: 122 LSMEAKASAWIIGSLPFCVSTLV 144
             + A  +  ++  +   +  +V
Sbjct: 281 NRLPALMTIPVMLFIMPTLFLIV 303


>gi|224368238|ref|YP_002602401.1| GspF1 [Desulfobacterium autotrophicum HRM2]
 gi|223690954|gb|ACN14237.1| GspF1 [Desulfobacterium autotrophicum HRM2]
          Length = 411

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 60/172 (34%), Gaps = 6/172 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISR 71
             +       +   + AG P+  AV+ +V Q+ S P++    ++  +   G S +E+++ 
Sbjct: 71  NAELAMVTRQLATLLSAGFPLISAVSSLVTQTRSKPLKKVLSKIKGSIEEGKSFAEALAM 130

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                     S     +    +  G L   L  L+ I   R+  K K+QA        A 
Sbjct: 131 YPSL-----FSAIYINMIRAGESSGTLEIVLERLADITEKREETKKKIQAALAYPVLMAI 185

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           +   +   +   +        + +     G  L  ++ +  L       L++
Sbjct: 186 VGALVLLFLLAYIVPGIIAIFSDMNQTLPGPTLFLISVSSFLKRFWWAVLLV 237


>gi|108804005|ref|YP_643942.1| type II secretion system protein [Rubrobacter xylanophilus DSM
           9941]
 gi|108765248|gb|ABG04130.1| type II secretion system protein [Rubrobacter xylanophilus DSM
           9941]
          Length = 403

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 55/164 (33%), Gaps = 6/164 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   + AGLP+  A+ ++  Q+++  +R    +V      G++LSE++ R  
Sbjct: 63  DLVVFTRQLSTMINAGLPIVRALHILEEQTANKKLRDVIVKVRSDVEAGMALSEALERHP 122

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    ++GG L   L  ++  L   + ++ K+++            
Sbjct: 123 EVFG-----RLYVEMVRAGEVGGVLDRVLLRVASQLEKDQELRRKIKSALAYPAVVLVAA 177

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
                 +   +          L         + +  + +L G  
Sbjct: 178 VLAAAFMLIFIVPIFARMFEDLGGTLPLPTRIAMGISDLLTGPW 221



 Score = 35.5 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 15/136 (11%), Positives = 35/136 (25%), Gaps = 5/136 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                  +   V AG+P+  A+ +    S + V               ++ E        
Sbjct: 269 LARFARTLGSLVAAGVPILQAIEITAASSGNWVVE-----NALMKSRDAIREGHPLHRPL 323

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                     T +    +  G+L   L  ++           K     +E      + G 
Sbjct: 324 EGEAVFPPMVTRMIAVGEETGDLEGMLGKIADFYESEVEAAVKALTSIIEPVMIVIVGGI 383

Query: 136 LPFCVSTLVYFTSPGY 151
           +   + ++       +
Sbjct: 384 VGGIIISMYLPMFRIF 399


>gi|166713143|ref|ZP_02244350.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 444

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/173 (12%), Positives = 55/173 (31%), Gaps = 6/173 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            +       +   +++G+P+  ++ +I     +  ++    ++      G SL ESIS+ 
Sbjct: 104 KEIAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLYESISKH 163

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L  ++    + + +K K++           +
Sbjct: 164 PVQ-----FDELYRNLVRAGEGAGVLETVLETVATYKENIEALKGKIKKAMFYPAMVVAV 218

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              +   +   V             +      L V A+  ++    + LM+  
Sbjct: 219 AIIVSAILLIFVVPQFEEVFKSFGAELPAFTQLLVNASRFMVSYWWLMLMVTV 271



 Score = 38.9 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 16/137 (11%), Positives = 48/137 (35%), Gaps = 7/137 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISR 71
                        + +AG+P+ +A+ ++ G + + +  E   R+ +   +G  ++ ++ +
Sbjct: 307 NSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEEAVFRMRDDVSVGYPVNMAMKQ 366

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +  +  +         ++   +  G L   L  ++    D  N      +  +E     +
Sbjct: 367 VNLFPHM------VIQMTAIGEEAGALDAMLFKVAEYFEDEVNNAVDALSSLLEPLIMVF 420

Query: 132 IIGSLPFCVSTLVYFTS 148
           I   +   V  +     
Sbjct: 421 IGTIVGGMVIGMYLPIF 437


>gi|118466209|ref|YP_879790.1| type II secretion system protein F [Mycobacterium avium 104]
 gi|118167496|gb|ABK68393.1| bacterial type II secretion system protein F domain [Mycobacterium
           avium 104]
          Length = 267

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 69/172 (40%), Gaps = 1/172 (0%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                ALD++V  +RAG     A  V  G+++ PV    R V     LG  ++  ++   
Sbjct: 92  RALETALDVLVGELRAGSHPVRAFDVAAGETAGPVAVALRSVAARARLGADVAAGLAAAS 151

Query: 74  RYMPLQE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           R     E     +    +    G  ++  +    R + +R+   A+V +    A+A+A I
Sbjct: 152 RGSARPEHWQRLALCWRLAGDHGLGIATLMRAAQRDIAERQRFSARVSSSLAGARATAAI 211

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + +LP     L        ++ L+    G  LL V A     G++    +++
Sbjct: 212 LAALPVLGVLLGQLIGARPLDFLLGGQVGGWLLLVGATLACAGLLWADRIVD 263


>gi|317471422|ref|ZP_07930774.1| type II secretion system protein [Anaerostipes sp. 3_2_56FAA]
 gi|316901037|gb|EFV22999.1| type II secretion system protein [Anaerostipes sp. 3_2_56FAA]
          Length = 401

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/200 (11%), Positives = 69/200 (34%), Gaps = 22/200 (11%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRSEFRRVIETQH 60
            L  KR  K      +    +   ++AG+ +  ++ +I  +       +  ++ ++ +  
Sbjct: 49  KLKSKRKMK-ASVLADFCRQLGTLLKAGVSLVRSLNIIANEIGVRSTDKETYQNLLNSIR 107

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ LSE++    R  P+         +   ++  GNL +    ++        +  KV+
Sbjct: 108 QGIPLSEAMDEQGRTFPV-----LLVSMMRSAEANGNLDQTSLRMAEHYEKENRLNGKVR 162

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--------------HMLLG 166
              +     + ++  +   + + +        + +++ P                   + 
Sbjct: 163 NAMIYPIVLSVLLVGVIIFILSYLVPQFQDIFDTMVSLPLPTVILLGLSGGIRKYWPFIL 222

Query: 167 VAAAFMLIGIMVMRLMINFD 186
           +  A ++ GI ++  +    
Sbjct: 223 LILAAVIFGIRLILRIPKVR 242



 Score = 38.2 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 38/133 (28%), Gaps = 5/133 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     +G+P+  A+ +      +    E            S+    S  V  M +
Sbjct: 267 FARTLCSLYSSGIPIIQAMQIGSSTVGNRYIEEQF-----GQAVDSIRRGESLSVSLMEI 321

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                  +      +  G+L E L +++  L        +     +E      +   + F
Sbjct: 322 DGFQKKLSSAIQVGEETGSLDEMLDSIAESLEFEAERALERLVTLLEPVLIILMAVIIGF 381

Query: 139 CVSTLVYFTSPGY 151
            V  ++      Y
Sbjct: 382 VVVAVILPIYESY 394


>gi|147677788|ref|YP_001212003.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum
           SI]
 gi|146273885|dbj|BAF59634.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum
           SI]
          Length = 307

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 64/145 (44%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I  R  +     P+ +D++  SV AGL    A+  +  +    +  EF ++++   
Sbjct: 150 LNKKILDRKKEIEKSLPDVMDLLTVSVEAGLSFDGALMKVTEKKRGVLSEEFTKMLQEIK 209

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G    E++  + R + + ++S F+  + +  QLG ++   L   S  +R ++   A+  
Sbjct: 210 IGRPRLEALRDLSRRLDVDDLSAFAGAVILADQLGISIGNILRVQSDQIRMKRRQAAEEM 269

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145
           A+    K    ++  +   +  ++ 
Sbjct: 270 AMKAPVKMLIPMVLFIFPAIFVVLL 294


>gi|297623007|ref|YP_003704441.1| Type II secretion system F domain-containing protein [Truepera
           radiovictrix DSM 17093]
 gi|297164187|gb|ADI13898.1| Type II secretion system F domain protein [Truepera radiovictrix
           DSM 17093]
          Length = 409

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 60/161 (37%), Gaps = 6/161 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                   + AGLPV  ++A++  Q+  D ++   +R+ E    G  LSE++++  +   
Sbjct: 73  FSRQFATVINAGLPVVQSLAILQRQAEKDALKEALKRIREEVETGTPLSEALAKHPKLFG 132

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  GNL   L  ++     +  ++ K+++          I   + 
Sbjct: 133 -----RLYVYLVRAGEASGNLDSILERIALYQEKQAALRGKLRSALTYPTVVLLIALGVT 187

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           + + T +     G +  L  +      + +A +  L G   
Sbjct: 188 YFLLTGIVPQFAGILTQLGGELPLMTRVLIAISDFLRGQWW 228


>gi|254479916|ref|ZP_05093164.1| Bacterial type II secretion system protein F domain [marine gamma
           proteobacterium HTCC2148]
 gi|214039478|gb|EEB80137.1| Bacterial type II secretion system protein F domain [marine gamma
           proteobacterium HTCC2148]
          Length = 406

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 19/171 (11%), Positives = 54/171 (31%), Gaps = 6/171 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   ++AG+P+  +  ++        +++    ++     G  L+ S+++ 
Sbjct: 67  ADIAIFTRQLATMMKAGVPLVQSFEIVADGVEKPRMKTLIVEIMNDVASGTGLAPSLAKH 126

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R+            +    +  G L   L  ++      + +KAK++       A   +
Sbjct: 127 PRH-----FDELFCSLIASGEESGTLEVMLDRVATYKEKTEALKAKIKKAMTYPIAVMAV 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
              +   +   V            +D     L  +  +  +     + L+ 
Sbjct: 182 AVVVTLILLIKVIPVFASTFQNFGSDLPAFTLFVMHLSEWVQEWWFIMLIA 232


>gi|309780544|ref|ZP_07675291.1| general secretion pathway protein F [Ralstonia sp. 5_7_47FAA]
 gi|308920699|gb|EFP66349.1| general secretion pathway protein F [Ralstonia sp. 5_7_47FAA]
          Length = 403

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 64/181 (35%), Gaps = 14/181 (7%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65
           KR +   +        +   + AGLP+ +A+A +  Q+    V      +      G SL
Sbjct: 59  KRLSAQENAL--VTRQLASLLVAGLPLDEALAALADQAERAYVGELLAAIRAEVVGGSSL 116

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S ++++  +     +       +    +  GNL   L+ L+  +  R  + +K++     
Sbjct: 117 SVALAQHPK-----DFPDIYRALVSAGEHSGNLGLVLSRLADYIESRNALTSKIKLAFTY 171

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF---MLIGIMVMRLM 182
                 +       V  L+ +  P  ++V  N  +    L +   +    +     +  +
Sbjct: 172 PA---IVTVVAFAIVIFLLSYVVPQVVSVFANTKQKLPTLTIIMLWLSDFVRNWGWLAAI 228

Query: 183 I 183
           +
Sbjct: 229 V 229


>gi|254229337|ref|ZP_04922754.1| bacterial type II secretion system protein F domain [Vibrio sp.
           Ex25]
 gi|262393424|ref|YP_003285278.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio sp. Ex25]
 gi|151938145|gb|EDN56986.1| bacterial type II secretion system protein F domain [Vibrio sp.
           Ex25]
 gi|262337018|gb|ACY50813.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio sp. Ex25]
          Length = 313

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 68/157 (43%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++ ++ KR        P+ LD++V    +GL  + A+  +  +   S   +  E   V  
Sbjct: 153 LRRMVNKRQQAIRAGVPDMLDLLVVCTESGLGFNAALRRVADELVISHPELADEIDTVCN 212

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G  + E++  +V    L+E+    +++S  S++GG+L  +L   +   RD++   A
Sbjct: 213 KIKAGKPMPEALRELVLRTGLEELMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAA 272

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +  A  +  K    ++  +  C    +    P  +++
Sbjct: 273 EEIAAKIPVKMMFPMVLFIWPC--FFIVAIGPALISL 307


>gi|309777430|ref|ZP_07672388.1| putative bacterial type II secretion system protein F domain
           protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914826|gb|EFP60608.1| putative bacterial type II secretion system protein F domain
           protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 266

 Score = 71.3 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 73/191 (38%), Gaps = 8/191 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55
            H  +KR+ +    F + L+ +  S+ AG+ V D++             +  +  E   +
Sbjct: 77  NHQNEKRSIELSRQFKDMLENLAASISAGVNVPDSIKSAYHSMQQQYDENAYIVKELHNI 136

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           +   +  +++   +         +++  F+       + GGN+ E + N   IL D+  +
Sbjct: 137 LIGFNNNINIETMLLDFGNRSGNEDIISFANTFETSYRKGGNMKEIIRNTYEILNDKITI 196

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + +V+ +   ++    I+  +P   S ++                G +  G A    +I 
Sbjct: 197 EMEVKTMIAASRNELNIMMCMPVLFSLVLNVMGGDITGH--ATLIGRIATGAAVMMFIIA 254

Query: 176 IMVMRLMINFD 186
            MV + ++   
Sbjct: 255 YMVGKKLMTIK 265


>gi|46143337|ref|ZP_00204444.1| COG2064: Flp pilus assembly protein TadC [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208032|ref|YP_001053257.1| tight adherence protein C [Actinobacillus pleuropneumoniae L20]
 gi|126096824|gb|ABN73652.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
          Length = 281

 Score = 71.3 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 71/154 (46%), Gaps = 4/154 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--TQHL 61
           ++K +  + ++D P  +D++  +V+ G+ +  A   +              ++    +  
Sbjct: 126 ILKSKIKRIMNDIPGFIDLVAVNVQTGISIEAAFKQVAIDFEHLNADLTYVILRIIRKAE 185

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
             SLS ++  M   +P +E+  F TV+      G +L E L  LS  +R+ + +  + + 
Sbjct: 186 LTSLSTALQDMAISLPTKEIRMFCTVMQQSLNFGSSLYEHLTQLSADIREMQLLVMEEKL 245

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            ++ AK S  +I  + F +  L+   +PG M VL
Sbjct: 246 GTLSAKMSIPLILFIMFPIIILI--VAPGAMRVL 277


>gi|315181052|gb|ADT87966.1| Flp pilus assembly protein TadC [Vibrio furnissii NCTC 11218]
          Length = 318

 Score = 71.3 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 78/157 (49%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +  ++KKR ++     P+ALD++V    +GL  + A+  +  +   S   +  E   V  
Sbjct: 158 LDRMVKKRKSRIKGGIPDALDLLVVCTESGLGFNAALRRVADELMISHPDLADELDTVCA 217

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ +SE+++++V    L E+S   ++++  S++GG++S+ L + +   RD++N + 
Sbjct: 218 KIKAGVEMSEAMAQLVERTGLTEISGLVSMLAHASRIGGSISQTLRDYTEDFRDKRNQEI 277

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +  A  +  K    ++  +  C    +    P  +++
Sbjct: 278 EEIAAKIPTKMIFPLLLFIWPC--FFIVAVGPSMLSL 312


>gi|115376389|ref|ZP_01463626.1| Flp pilus assembly protein TadC [Stigmatella aurantiaca DW4/3-1]
 gi|115366596|gb|EAU65594.1| Flp pilus assembly protein TadC [Stigmatella aurantiaca DW4/3-1]
          Length = 238

 Score = 71.3 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 70/162 (43%), Gaps = 3/162 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQ 59
           +   +K+R        P  LD++  SV AGL  + A++ +V +  S P++ E   V++  
Sbjct: 79  VNDQVKRRHLAISRALPYNLDLLTLSVEAGLDFTAALSKVVEKGKSGPLKEEMSIVLKQL 138

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            +G +  E++  M+  + L  ++ F T +    ++G +L + L   S  +R  +  +A+ 
Sbjct: 139 KMGKTREEALKAMILRVDLPSLTTFVTALIQADKMGTSLGKVLRIQSTQMRIDRTQRAEK 198

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
            A     K    +I  +   V   +    P     +  +  G
Sbjct: 199 LAGEAPVKMLFPLIACIFPTVF--MVLFGPIVFQFMFGNVGG 238


>gi|108756874|ref|YP_632816.1| type II secretion system protein F domain [Myxococcus xanthus DK
           1622]
 gi|108460754|gb|ABF85939.1| type II secretion system protein F domain protein [Myxococcus
           xanthus DK 1622]
          Length = 296

 Score = 71.3 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 70/162 (43%), Gaps = 3/162 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQ 59
           +   +KKR        P +LD++  SV AGL  + A+A +V +    P+R E + V++  
Sbjct: 137 LNDQVKKRHLLISRALPYSLDLLTLSVEAGLDFTAALAKVVEKGKPGPLREELQLVLKQL 196

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            +G +  E +  M+  + L  ++ F T +    ++G +L + L   S  +R  +  +A+ 
Sbjct: 197 KMGKTREEGLKSMIVRVDLPPLTTFVTALIQADKMGTSLGKVLRIQSTQMRIDRTQRAEK 256

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
            A     K    +I  +   V   +    P     +  +  G
Sbjct: 257 LAGEAPVKMLFPLIACIFPTVF--MVLFGPIVFQFMFGNVAG 296


>gi|41406515|ref|NP_959351.1| hypothetical protein MAP0417 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41394864|gb|AAS02734.1| hypothetical protein MAP_0417 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 267

 Score = 71.3 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 69/172 (40%), Gaps = 1/172 (0%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                ALD++V  +RAG     A  V  G+++ PV    R V     LG  ++  ++   
Sbjct: 92  RALETALDVLVGELRAGSHPVRAFDVAAGETAGPVAVALRSVAARARLGADVAAGLAAAS 151

Query: 74  RYMPLQE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           R     E     +    +    G  ++  +    R + +R+   A+V +    A+A+A I
Sbjct: 152 RSSARPEHWQRLALCWRLAGDHGLGIATLMRAAQRDIAERQRFSARVSSSLAGARATAAI 211

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + +LP     L        ++ L+    G  LL V A     G++    +++
Sbjct: 212 LAALPVLGVLLGQLIGARPLDFLLGGQVGGWLLLVGATLACAGLLWADRIVD 263


>gi|329939412|ref|ZP_08288748.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
 gi|329301641|gb|EGG45535.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
          Length = 316

 Score = 71.3 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 67/184 (36%), Gaps = 1/184 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   +++   +  +       ++   VRAG    +A+       S  +      V+    
Sbjct: 129 VARTVQRDRERRGEAVIALCAVLAGEVRAGRQPGEALRHAAQD-SGGLGGARAAVLAAAR 187

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  +  +++   R    + +   +    V    G  L+  L  L   LR  ++ +A ++
Sbjct: 188 FGGDVPGALTEAARGPGAEGLLGLAACWRVAVDRGAGLAAGLDRLEAALRAERDQRADLR 247

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A    A+++A ++  LP     L        ++V+++   G M L   A     G+    
Sbjct: 248 AQLAGARSTAVMLAGLPVLGLLLGTALGADPLHVVLHTGPGLMCLLAGAVLEAAGLWWAL 307

Query: 181 LMIN 184
            ++ 
Sbjct: 308 RIVR 311


>gi|260771470|ref|ZP_05880395.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio furnissii CIP 102972]
 gi|260613596|gb|EEX38790.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio furnissii CIP 102972]
          Length = 318

 Score = 71.3 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 78/157 (49%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +  ++KKR ++     P+ALD++V    +GL  + A+  +  +   S   +  E   V  
Sbjct: 158 LDRMVKKRKSRIKGGIPDALDLLVVCTESGLGFNAALRRVADELMISHPDLADELDTVCA 217

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ +SE+++++V    L E+S   ++++  S++GG++S+ L + +   RD++N + 
Sbjct: 218 KIKAGVEMSEAMAQLVERTGLTEISGLVSMLAHASRIGGSISQTLRDYTEDFRDKRNQEI 277

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +  A  +  K    ++  +  C    +    P  +++
Sbjct: 278 EEIAAKIPTKMIFPLLLFIWPC--FFIVAVGPSMLSL 312


>gi|88856422|ref|ZP_01131080.1| putative integral membrane protein [marine actinobacterium
           PHSC20C1]
 gi|88814289|gb|EAR24153.1| putative integral membrane protein [marine actinobacterium
           PHSC20C1]
          Length = 305

 Score = 71.3 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 63/180 (35%), Gaps = 4/180 (2%)

Query: 9   TAKFLDDFPNA---LDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLS 64
             +     P        +   + AGL  S A   +   +S+D V +      E       
Sbjct: 1   MKRARSQLPEVASVTQRLAVLLNAGLTPSSAWFHVARGRSADGVAALVALAGEEPGGAAE 60

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
                +  +  +  Q  +  +    V  Q+G  L+ AL   +R LR   +++ +V     
Sbjct: 61  RIVRAAEGLAPLDRQAWNSLAAAWFVAGQVGAPLAAALRTHARALRMLVHVQREVATALA 120

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
              A+A ++ +LP              + VL++ P G   L V  A +   +   R ++ 
Sbjct: 121 APVATARMVLALPAIGLVFGALLGFDTIGVLVSTPIGWGCLVVGGALIAAAVRWNRRLVR 180


>gi|165975969|ref|YP_001651562.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|190149860|ref|YP_001968385.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|303251577|ref|ZP_07337751.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|303252182|ref|ZP_07338350.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|307245407|ref|ZP_07527495.1| hypothetical protein appser1_6120 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307247522|ref|ZP_07529567.1| hypothetical protein appser2_5180 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307249754|ref|ZP_07531732.1| hypothetical protein appser4_5560 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307252110|ref|ZP_07534009.1| hypothetical protein appser6_6280 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307254362|ref|ZP_07536200.1| hypothetical protein appser9_6100 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307256569|ref|ZP_07538350.1| hypothetical protein appser10_5740 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307258820|ref|ZP_07540552.1| hypothetical protein appser11_6180 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|307260999|ref|ZP_07542681.1| hypothetical protein appser12_5660 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|307263184|ref|ZP_07544805.1| hypothetical protein appser13_6060 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|165876070|gb|ABY69118.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|189914991|gb|ACE61243.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|302648965|gb|EFL79153.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|302649575|gb|EFL79757.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|306853748|gb|EFM85965.1| hypothetical protein appser1_6120 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306856025|gb|EFM88183.1| hypothetical protein appser2_5180 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306858169|gb|EFM90247.1| hypothetical protein appser4_5560 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306860410|gb|EFM92424.1| hypothetical protein appser6_6280 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306862661|gb|EFM94617.1| hypothetical protein appser9_6100 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306864979|gb|EFM96881.1| hypothetical protein appser10_5740 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306867171|gb|EFM99027.1| hypothetical protein appser11_6180 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306869301|gb|EFN01096.1| hypothetical protein appser12_5660 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306871546|gb|EFN03269.1| hypothetical protein appser13_6060 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 281

 Score = 71.3 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 71/154 (46%), Gaps = 4/154 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--TQHL 61
           ++K +  + ++D P  +D++  +V+ G+ +  A   +              ++    +  
Sbjct: 126 ILKSKIKRIMNDIPGFIDLVAVNVQTGISIEAAFKQVAIDFEHLNADLTYVILRIIRKAE 185

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
             SLS ++  M   +P +E+  F TV+      G +L E L  LS  +R+ + +  + + 
Sbjct: 186 LTSLSAALQDMAISLPTKEIRMFCTVMQQSLNFGSSLYEHLTQLSADIREMQLLVMEEKL 245

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            ++ AK S  +I  + F +  L+   +PG M VL
Sbjct: 246 GTLSAKMSIPLILFIMFPIIILI--VAPGAMRVL 277


>gi|127511327|ref|YP_001092524.1| type II secretion system protein [Shewanella loihica PV-4]
 gi|126636622|gb|ABO22265.1| type II secretion system protein [Shewanella loihica PV-4]
          Length = 405

 Score = 71.3 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 50/171 (29%), Gaps = 6/171 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
           D+       +    R+G+P+  A+A +   S    ++     + E    G  LS +    
Sbjct: 64  DELQIFTRQMYSLTRSGIPILRAIAGLSESSHSKRMKDALNDISEQLISGRPLSSA---- 119

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L +A   LS  +   +  + +++A           
Sbjct: 120 -MNHHPDVFDALFVSMIHVGENTGKLEDAFIQLSGYIEREQETRRRIKAAMRYPIFVLMA 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           +      ++ +V             D      L +  +   +    + L+ 
Sbjct: 179 VALAMVVLNIMVIPKFADLFARFGADLPWATKLLIGTSNFFVNYWYLLLIA 229



 Score = 41.3 bits (95), Expect = 0.063,   Method: Composition-based stats.
 Identities = 10/132 (7%), Positives = 35/132 (26%), Gaps = 5/132 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                      + AG+P++ A++++     +    +    +        +    S +   
Sbjct: 269 LSRYCRSFSMMLSAGVPMTQALSLVADAVDNAYMHDRIVAMRR-----GIESGESMLRVS 323

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
              Q  +     +    +  G + + L + +       +   K     +E      +   
Sbjct: 324 NQSQLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGIVAVI 383

Query: 136 LPFCVSTLVYFT 147
           +      +    
Sbjct: 384 VLILALGIYLPM 395


>gi|291520244|emb|CBK75465.1| Flp pilus assembly protein TadB [Butyrivibrio fibrisolvens 16/4]
          Length = 245

 Score = 71.3 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 76/184 (41%), Gaps = 6/184 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRVIE 57
           +  ++  +   +F   + +IV S++ G  +  A+     +          +  +   + +
Sbjct: 62  IKAEKRGRLSAEFKEFMMLIVASLQTGYSLERAIKQSEVELHKLYPNGCIIAGQVHILNQ 121

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              + + L ++     + + L+E    + +IS   + GGN  + + + +  + +   +K 
Sbjct: 122 KIAMNVQLEKAFFEFAKAIELEEALSLAEIISFAKRSGGNYGKHIRDTALKIEENILIKQ 181

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +++ ++ E +    ++  +P  +   +  TSP ++  +  +  G  L+ +        I+
Sbjct: 182 EIETITTEKRLELKVMCIMPIGILAYISLTSPNFIAPIYGNVLGAGLMSLCLIVYGALII 241

Query: 178 VMRL 181
           + R 
Sbjct: 242 LGRK 245


>gi|256785972|ref|ZP_05524403.1| integral membrane protein [Streptomyces lividans TK24]
          Length = 347

 Score = 71.3 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 18/174 (10%), Positives = 61/174 (35%), Gaps = 2/174 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +   +  + +  ++   + +  A+      ++  +R     +++       L +++  + 
Sbjct: 124 EALASWTESLRDTIAGAVGLEQAIPASARAAAPVLRPHLDALVDRLRSRTPLPDALQHLA 183

Query: 74  RYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + +     G  L + L  L++  R+  +M+ +V A     + S  I
Sbjct: 184 DEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQRASTRRSVQI 243

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + ++       +   +  ++      P G ++L        +G   +R +   +
Sbjct: 244 VVAVSVLFVLGLSIFNRDFVEP-YGSPVGQLVLVCVCGLFALGFWWLRKLSTIE 296


>gi|330973678|gb|EGH73744.1| type II secretion system protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 405

 Score = 71.3 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 16/165 (9%), Positives = 47/165 (28%), Gaps = 5/165 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           D       +   ++AG+P+  +  +I   + +P        ++ +    +       M  
Sbjct: 67  DIAFFARQMATMMKAGVPLLQSFDIIGEGAENPNMRALVSSLKQEVSAGN----SFAMAL 122

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
               +        +    +  G L   L  ++      + +KAK++       A   +  
Sbjct: 123 RQKPEYFDDLFCNLVDAGEQAGALESLLDRVASYKEKTEKLKAKIKKAMTYPAAVLIVAV 182

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            +   +   V             +     L+ +     ++    +
Sbjct: 183 IVSGILLIEVVPQFQSVFAGFGAELPTFTLMVIGL-SEVVQKWWL 226



 Score = 35.5 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 49/166 (29%), Gaps = 26/166 (15%)

Query: 3   HLIKKRTAKFLDDFPNAL-------------------DIIVRSVRAGLPVSDAVAVIVGQ 43
               KR+ KF D     L                     +  +  AG+P+ +A+  + G 
Sbjct: 240 KRAYKRSQKFRDSLDRFLLKIPVIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGA 299

Query: 44  SSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102
           + + V      +V +    G+ L+ S+               +  ++   +  G L   L
Sbjct: 300 TGNVVFRNAVNKVKQDVSTGMQLNFSMRSTG------VFPSLAIQMTAIGEESGALDNML 353

Query: 103 ANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
             ++    D  +         ME    A +   +   V  +     
Sbjct: 354 DKVATYYEDEVDNMVDSLTSLMEPMIMAVLGVVVGGLVIAMYLPIF 399


>gi|84685156|ref|ZP_01013055.1| Putative Flp pilus assembly protein TadC [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84666888|gb|EAQ13359.1| Putative Flp pilus assembly protein TadC [Rhodobacterales bacterium
           HTCC2654]
          Length = 329

 Score = 71.3 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 4/161 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +K  I+ R A+    FPNALD++  S  AG+    A+  +       S  +  EF     
Sbjct: 169 LKRKIRARQAEIEAGFPNALDLLQISTEAGMGFDAAMTRVGQSLATVSPAISEEFLLCQA 228

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++++ M   M + EVS F+ V+S   + G ++++AL   +  +R+ + MKA
Sbjct: 229 EILASRDRRQALADMAERMGVAEVSAFAQVVSQSMEYGTSIAKALNAYAAEMREMREMKA 288

Query: 118 KVQALSMEAKASAWI-IGSLPFCVSTLVYFTSPGYMNVLIN 157
             +A  +  + S  + +  LP      +  T   Y++V  +
Sbjct: 289 IEKANRLPVQMSGVMSVMMLPALFLITLGPTVIRYLSVFGD 329


>gi|323499916|ref|ZP_08104875.1| Flp pilus assembly protein TadC [Vibrio sinaloensis DSM 21326]
 gi|323315157|gb|EGA68209.1| Flp pilus assembly protein TadC [Vibrio sinaloensis DSM 21326]
          Length = 314

 Score = 71.3 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 73/155 (47%), Gaps = 5/155 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + +++KKR ++     P+ALD++V    +GL  S A+  +  +   S      E   V  
Sbjct: 154 LNYVVKKRQSRIRGGVPDALDLLVVCTESGLGFSAALRRVADELMISHPDFADELDTVCV 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ +S++   +V    ++E++   T++S  S++GG+LS+ L   +   RD++N + 
Sbjct: 214 KIKAGVEMSDAFEDLVERTGIKELAGLVTMLSHASRIGGSLSQTLREYTEDFRDKRNQEI 273

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
           +  A  +  K    ++  +  C    +    P  +
Sbjct: 274 EEIAAKIPTKMIFPLLLFIWPC--FFIVAIGPSML 306


>gi|147677482|ref|YP_001211697.1| type II secretory pathway, component PulF [Pelotomaculum
           thermopropionicum SI]
 gi|146273579|dbj|BAF59328.1| type II secretory pathway, component PulF [Pelotomaculum
           thermopropionicum SI]
          Length = 402

 Score = 71.3 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 56/161 (34%), Gaps = 7/161 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59
           +     KR  K  D        +   + AG+P++  +  +  QS +  +      +    
Sbjct: 51  LNLFKAKRKVKLPDVL-FFTRQLAAMLAAGIPLTRCLNTLSKQSENASLSDIASEMARNV 109

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G++LSE++            S     +    ++GG++ E L  L+  L   K ++  +
Sbjct: 110 EAGMNLSEALKAYPE-----VFSAMYVDMVRAGEIGGSMEEMLNRLADQLERDKRLRDSI 164

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
           ++ +            +   + T V     G+    +  P 
Sbjct: 165 RSATFYPATVMAFALLVVLVMLTFVVPVFAGFFPAGMELPL 205


>gi|299065324|emb|CBJ36493.1| General Secretory Pathway protein F, type II secretion system
           [Ralstonia solanacearum CMR15]
          Length = 403

 Score = 71.3 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 60/178 (33%), Gaps = 8/178 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65
           KR +   +        +   + AGLP+ +A+A +  Q+    V      +      G SL
Sbjct: 59  KRLSPQENAL--VTRQLASLLVAGLPLDEALAALADQAERPYVHELLASIRAEVVGGSSL 116

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S ++S+  R     +       +    +  GNL   L+ L+  +  R  + +K++     
Sbjct: 117 SVALSQHPR-----DFPDIYRALVSAGEHSGNLGLVLSRLADYIESRNALTSKIKLAFTY 171

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
                 +  ++   + + V                   ++ +  +  +     +  ++
Sbjct: 172 PAIVTVVAFAIVIFLLSYVVPQVVSVFANTKQKLPTLTIIMLWLSDFVRNWGWLAAIV 229


>gi|187930467|ref|YP_001900954.1| general secretion pathway protein F [Ralstonia pickettii 12J]
 gi|187727357|gb|ACD28522.1| general secretion pathway protein F [Ralstonia pickettii 12J]
          Length = 403

 Score = 71.3 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 64/181 (35%), Gaps = 14/181 (7%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65
           KR +   +        +   + AGLP+ +A+A +  Q+    V      +      G SL
Sbjct: 59  KRLSAQENAL--VTRQLASLLVAGLPLDEALAALADQAERAYVGELLAAIRAEVLGGSSL 116

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S ++++  +     +       +    +  GNL   L+ L+  +  R  + +K++     
Sbjct: 117 SVALAQHPK-----DFPDIYRALVSAGEHSGNLGLVLSRLADYIESRNALTSKIKLAFTY 171

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF---MLIGIMVMRLM 182
                 +       V  L+ +  P  ++V  N  +    L +   +    +     +  +
Sbjct: 172 PA---IVTVVAFAIVIFLLSYVVPQVVSVFANTKQKLPTLTIIMLWLSDFVRNWGWLAAI 228

Query: 183 I 183
           +
Sbjct: 229 V 229


>gi|297537794|ref|YP_003673563.1| Type II secretion system F domain-containing protein [Methylotenera
           sp. 301]
 gi|297257141|gb|ADI28986.1| Type II secretion system F domain protein [Methylotenera sp. 301]
          Length = 405

 Score = 71.3 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 18/167 (10%), Positives = 50/167 (29%), Gaps = 6/167 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   ++AG+P+  +  ++    S+  V      +      G S+S +  +
Sbjct: 65  DKDITLFTRQLATMMKAGVPLLQSFDIVGKGHSNPAVAKLLLDIKSDVETGSSMSAAFRK 124

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    +  G L   L  L+        +K+K+++      +   
Sbjct: 125 YPL-----YFDALFCNLIGAGEQAGILDTLLDRLATYKEKILAIKSKIKSALFYPISIIV 179

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +   +   +   V        +    +     L+ +A + + +    
Sbjct: 180 VAFVIVAVIMIFVIPAFKTLFDGFGAELPAPTLIVMAISDIFVQWWW 226



 Score = 40.5 bits (93), Expect = 0.096,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 42/142 (29%), Gaps = 11/142 (7%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLS 66
           R A            +     AG+P+ +A+  + G S + V     ++V      G SL+
Sbjct: 268 RKATIAR----WARTLATMFSAGVPLVEALDSVAGASGNRVYYDATKKVQSEISTGTSLT 323

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++                  ++   +  G L   L+ ++       +      A  ME 
Sbjct: 324 VAMQN------TDVFPNMVLQMTAIGEESGALDAMLSKVADFFEAEVDDAVDALASLMEP 377

Query: 127 KASAWIIGSLPFCVSTLVYFTS 148
                +   +   V  +     
Sbjct: 378 VIMVVLGVLIGGLVIAMYMPIF 399


>gi|170725110|ref|YP_001759136.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
 gi|169810457|gb|ACA85041.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
          Length = 287

 Score = 71.3 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 3/158 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +  L KKR A  +   P  LD +  S+ AGL ++ A++  V +    P+R EF +VI   
Sbjct: 131 LNDLRKKRQALIVKSLPVYLDYLTMSIEAGLNMTGAISQAVERGPSGPLRIEFEKVIRDM 190

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G+S ++S   M   + + E++   + ++   + G +L + L   S   R  +  +A+ 
Sbjct: 191 RAGMSRAQSFRNMAERVQITEINSLVSALAQAEKTGASLGQTLRVQSDQRRIERFQRAEK 250

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           +AL    K    +I  +      ++ F  P  M  +  
Sbjct: 251 KALEAPVKLVFPLIVFIFPVTFMILAF--PIAMKFMYE 286


>gi|294139061|ref|YP_003555039.1| MSHA biogenesis protein MshG [Shewanella violacea DSS12]
 gi|293325530|dbj|BAJ00261.1| MSHA biogenesis protein MshG [Shewanella violacea DSS12]
          Length = 406

 Score = 71.3 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/164 (12%), Positives = 48/164 (29%), Gaps = 6/164 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
           +       +    R+G+P+  A+A +   +    +R     + E    G  LS +     
Sbjct: 65  ELQIFSRQMYSLTRSGIPILRAIAGLSETTHSQRMRDALNDISEQLTAGRPLSSA----- 119

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G L +A   LS  +   +  + +++A           I
Sbjct: 120 MNHHQDVFDALFVSMVHVGENTGKLEDAFMQLSGYIEREQETRRRIKAAMRYPIFVLIAI 179

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
                 ++ +V        +    D      L +  + + +   
Sbjct: 180 TIAMVILNIMVIPKFADMFSRFGADLPWATKLLIGTSSLFVNYW 223



 Score = 41.6 bits (96), Expect = 0.043,   Method: Composition-based stats.
 Identities = 11/132 (8%), Positives = 37/132 (28%), Gaps = 5/132 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                      + AG+P++ A++++     +    +    +        +    S +   
Sbjct: 269 LSRYCRSFSMMLSAGVPMTQALSLVADSVDNAYMHDRIVAMRR-----GIESGDSMLRVS 323

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
              Q  +     +    +  G + + L + +       +   K     +E     ++ G 
Sbjct: 324 NQSQLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGFVAGI 383

Query: 136 LPFCVSTLVYFT 147
           +      +    
Sbjct: 384 VLILALGIYLPM 395


>gi|187925907|ref|YP_001897549.1| general secretion pathway protein F [Burkholderia phytofirmans
           PsJN]
 gi|187717101|gb|ACD18325.1| general secretion pathway protein F [Burkholderia phytofirmans
           PsJN]
          Length = 405

 Score = 71.3 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 60/183 (32%), Gaps = 12/183 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +   + +R              +   + AGLP+ +A+AV+  QS  D +R     +    
Sbjct: 59  LGRRLSQREQAI------LTRQLASLLIAGLPLDEALAVLTEQSERDYIRELMASIRAEV 112

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G SL+ ++++  +     +       +    +  G L   L+ L+  +  R  +K K+
Sbjct: 113 LGGHSLANALTQHPK-----DFPEIYRALVAAGEHTGKLGLVLSRLADYIEQRNALKQKI 167

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
                       I   +   + + V                   ++ +A +  +      
Sbjct: 168 VLAFTYPTIVTIIAFGIVTFLLSYVVPQVVNVFASTKQQLPFLTIMMMALSGFVRNWWWA 227

Query: 180 RLM 182
            L+
Sbjct: 228 MLI 230



 Score = 38.6 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       S+    E     I     G SLS ++     + P
Sbjct: 274 FASTLGILTAAGVPILRALQAAAETLSNNAMRENIDDAIVRVREGTSLSRALGNTKTFPP 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G+++  L   +         +       +E      + G + 
Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAADGEARELERRTMFLTSLLEPLLILAMGGVVL 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 VIVLAVMLPI 397


>gi|294624334|ref|ZP_06703034.1| fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292601366|gb|EFF45403.1| fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 419

 Score = 70.9 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 57/171 (33%), Gaps = 6/171 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +++G+P+  ++ +I     +  +R    ++      G SL E+IS+ 
Sbjct: 79  KDIAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMRKMVGQIRTDIEGGSSLHEAISKH 138

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L  ++    + + +K K++           +
Sbjct: 139 PVQ-----FDELYRNLVRAGEGAGVLETVLDTVANYKENIEALKGKIKKALFYPAMVVAV 193

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
              +   +   V          L  +      + VAA+  +I    + L++
Sbjct: 194 ALIVSAILLIFVVPQFEEVFKGLGAELPAFTQMIVAASRFMISYWWLMLLV 244



 Score = 37.8 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 47/131 (35%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77
                  + +AG+P+ +A+ ++ G + + V  E   R+ +   +G  ++ ++ ++  +  
Sbjct: 288 FARTTAVTFKAGVPLVEALGIVAGATGNKVYEEAVLRMRDDVSVGYPVNMAMKQVNLFPH 347

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         ++   +  G L   L  ++       N      +  +E     +I   + 
Sbjct: 348 M------VIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGTIVG 401

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 402 GMVIGMYLPIF 412


>gi|117928944|ref|YP_873495.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
 gi|117649407|gb|ABK53509.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
          Length = 311

 Score = 70.9 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 64/154 (41%), Gaps = 2/154 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R+ + L +FP   +++  +V AG   + A+  +V      +  EF R +    
Sbjct: 156 LSREAQRRSRRMLAEFPTVAELLALAVGAGESPAAALERVVRVCRGELSVEFARALSEAR 215

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL  ++  +    PL  +S F   + V  Q G  L++ L   +  +R+    K  + 
Sbjct: 216 TGGSLVTALENLAARNPLDIMSRFVDGMIVAMQRGTPLADVLRAQASDVRE--AAKRSLL 273

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
            +    +    +         TL++   P ++++
Sbjct: 274 DIGGRKEIGMMVPVVFLILPITLLFALFPSFVSL 307


>gi|116747569|ref|YP_844256.1| type II secretion system protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116696633|gb|ABK15821.1| type II secretion system protein [Syntrophobacter fumaroxidans
           MPOB]
          Length = 405

 Score = 70.9 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 51/169 (30%), Gaps = 7/169 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
             +    +      + AGLP+   + ++  Q  +   +   ++V +    G +LS++I +
Sbjct: 62  EKELVIFVRQFSTMIDAGLPLVQCLEILQEQQENSTFKRIIKKVKKDVEEGATLSDAIRK 121

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +             +    ++GG L   L  L+  +     +K +V+           
Sbjct: 122 HPK-----VFDNLFVNLVAAGEVGGILDVILNRLAAYIEKVAKLKRRVKGAMTYPAIVVT 176

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM-VM 179
           I   +   +   V     G             L  +  +         +
Sbjct: 177 IALLVVAVILIYVIPVFAGLFREAGAKLPAMTLAVMNLSDFAQNYFHWI 225



 Score = 38.6 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 38/130 (29%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+P+ D + ++   S + V  +  RV                  +  P+
Sbjct: 271 FTRTLGTMLASGVPILDGLDIVAATSGNMVIEKAIRVARNAISEGRPIAEPLSETKVFPM 330

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                  T +    +  G L   L  ++    D  +         +E     ++  ++  
Sbjct: 331 -----MVTQMIAVGEATGALDTMLGKIADFYDDEVDTAVDALTSLLEPMLIVFLGVTIGG 385

Query: 139 CVSTLVYFTS 148
            +  +     
Sbjct: 386 LLVAMYLPIF 395


>gi|302521143|ref|ZP_07273485.1| integral membrane protein [Streptomyces sp. SPB78]
 gi|302430038|gb|EFL01854.1| integral membrane protein [Streptomyces sp. SPB78]
          Length = 351

 Score = 70.9 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/184 (10%), Positives = 66/184 (35%), Gaps = 2/184 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             ++   + ++      + +  ++   + +  A+      ++  +R     +++      
Sbjct: 126 REERTQMRRVEALATWTESLRDTIAGAVGLEQAIPASARAAAPALRPHLEALVDRLRART 185

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            L +++  +   +           + +     G  L + L  L++  R+  +M+ +V A 
Sbjct: 186 PLPDALQFLADEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQ 245

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
               + S  I+ ++       +   +  +++   N P G ++L        +G   +R +
Sbjct: 246 RAATRRSVQIVVAVSVLFVLGLAIFNKDFVSP-YNSPVGQVVLAGVCGLFALGFWWLRKL 304

Query: 183 INFD 186
              +
Sbjct: 305 STIE 308


>gi|300704935|ref|YP_003746538.1| tad secretion system, secretion accessory protein [Ralstonia
           solanacearum CFBP2957]
 gi|299072599|emb|CBJ43949.1| Tad secretion system, secretion accessory protein [Ralstonia
           solanacearum CFBP2957]
          Length = 314

 Score = 70.9 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 72/148 (48%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           ++  I++R     + FP++LD+I+  V AGL +  AV  +V +       +  E+  +  
Sbjct: 149 LRLKIRRRQRDIFEAFPDSLDLIMVCVEAGLGLDAAVLRVVEEMRTARPAMAEEYELLTL 208

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL+  +++  +     +++VS    ++    + G +++E+L   S +LR +++M A
Sbjct: 209 ELRAGLAREKALRNLAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRHMLA 268

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A  +  K    +I  +   +  ++ 
Sbjct: 269 EERAAKIGTKILFPLIFCIFPSLFVVLL 296


>gi|210629925|ref|ZP_03296172.1| hypothetical protein COLSTE_00055 [Collinsella stercoris DSM 13279]
 gi|210160742|gb|EEA91713.1| hypothetical protein COLSTE_00055 [Collinsella stercoris DSM 13279]
          Length = 254

 Score = 70.9 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 77/171 (45%), Gaps = 1/171 (0%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P A   +  S+ +GL ++ A+  + G+S +PVR+EF         G+S  +++  +V  
Sbjct: 84  MPEAFGALAFSLGSGLSLAQAMQYVGGRSEEPVRTEFLHASALMTCGVSSVDALDELVTR 143

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
           +    +      + V  + G +L+  L+  + ++ +R  +   ++  + + + SA ++  
Sbjct: 144 LNAPALDLVVLALKVSRKTGASLTGLLSEAAGLVGERIELARNLEVKTAQVRMSARLVAG 203

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           +P  +   +   S  +   +     G   L VA A  +   +V+R ++  D
Sbjct: 204 MPVIMVGFLSLVSRDFRAGV-ATGPGIGSLAVALALNIAAWLVIRKIMQVD 253


>gi|159901127|ref|YP_001547374.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159894166|gb|ABX07246.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 301

 Score = 70.9 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 66/145 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   IKKR    L   P+ALD++  SV AGL    A+  +  +  + +  EFRR +    
Sbjct: 145 LGRQIKKRQKLILKALPDALDLLSISVTAGLGFDAALQRVAEKWDNELCREFRRALSDIR 204

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG    E+   M     +++++ F + +    QLG ++ + L   S  LR R+  +A+ +
Sbjct: 205 LGTQRHEAFRSMTVRTGVEDLTSFVSAVIQADQLGVSMGKMLKIQSDQLRLRRRQRAEEE 264

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145
           A     K    ++  +   +  ++ 
Sbjct: 265 AQKAPIKMLFPLVFLIFPSMFVVIL 289


>gi|32477852|ref|NP_870846.1| protein secretion system or pilus assembly related protein TadB
           [Rhodopirellula baltica SH 1]
 gi|32448409|emb|CAD77924.1| probable protein secretion system or pilus assembly related protein
           TadB [Rhodopirellula baltica SH 1]
          Length = 297

 Score = 70.9 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 86/177 (48%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R ++      + LD+++  +R+G   S A+A     ++ P+R +    +    LG S S 
Sbjct: 118 RLSRIERQLIDLLDMMIPMLRSGAGASAALAAASEVTASPLRDQIHWCVRRIQLGDSGSS 177

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
               + R MP+  +  FST +SV  + GG+L+  LA+++R+ RDR+ +  ++++   +++
Sbjct: 178 VFRELARRMPIDAMELFSTTMSVHWETGGSLAPVLASVARVARDRQEVARRIRSNIAQSQ 237

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            S   +  L + V+ +++   P +M    +   G   +        +GI+ M  +  
Sbjct: 238 FSTIAVLLLIYFVALVLWLDRPEWMKEFASSSLGSAAIAATIVLQAVGIIWMNAISR 294


>gi|294666986|ref|ZP_06732215.1| pilC, fimbrial assembly protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603275|gb|EFF46697.1| pilC, fimbrial assembly protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 418

 Score = 70.9 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 55/173 (31%), Gaps = 6/173 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +++G+P+  A+ +I     +  ++    ++      G SL E+ISR 
Sbjct: 79  KDIAFFSRQMATMMKSGVPIVGALEIIGEGHKNPRMKKMVGQIRADIEGGSSLYEAISRH 138

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L  ++    + + +K K++           +
Sbjct: 139 PVQ-----FDDLYRNLVRAGEGAGVLETVLDTVANYKENIEALKGKIKKALFYPAMVMAV 193

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              +   +   V             +      + VAA+  ++      L+ + 
Sbjct: 194 AIIVSGILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWFMLLASV 246



 Score = 37.0 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 48/131 (36%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77
                  + +AG+P+ +A++++ G + + V  E   R+ +   +G  ++ ++ ++  +  
Sbjct: 288 FARTTAVTFKAGVPLVEALSIVAGATGNKVYEEAVLRMRDDVSVGYPVNMAMKQVNLFPH 347

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         ++   +  G L   L  ++       N      +  +E     +I   + 
Sbjct: 348 M------VIQMTSIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIVG 401

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 402 GMVIGMYLPIF 412


>gi|254478240|ref|ZP_05091621.1| Bacterial type II secretion system protein F domain
           [Carboxydibrachium pacificum DSM 12653]
 gi|214035836|gb|EEB76529.1| Bacterial type II secretion system protein F domain
           [Carboxydibrachium pacificum DSM 12653]
          Length = 301

 Score = 70.9 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 77/181 (42%), Gaps = 3/181 (1%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +L ++R  K  + F + + ++   ++     + A      +   P++    RV+    LG
Sbjct: 117 YLGRRRIRKTEEQFRDFVKMLGAYLKMVPSFAGAFIKAAEEVESPLKEHTDRVVRKFELG 176

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             L E++  + + +    +  ++  I    ++  +LS      ++ L +R  M  +V ++
Sbjct: 177 EDLEEALKEL-KSVESTYIKAWADSIIFAVRMKSDLSRVCERTAKKLYERIKMANRVASM 235

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRL 181
           +++AK+    +  +   +       SP ++    + P G +++   A    I  + +++ 
Sbjct: 236 TVQAKSLMVSLAGMMAFMIVSTMSVSPDFVRA-FSTPIGKVVVAYTALSYFISTLYILKR 294

Query: 182 M 182
           +
Sbjct: 295 I 295


>gi|217967264|ref|YP_002352770.1| type II secretion system protein [Dictyoglomus turgidum DSM 6724]
 gi|217336363|gb|ACK42156.1| type II secretion system protein [Dictyoglomus turgidum DSM 6724]
          Length = 409

 Score = 70.9 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 53/154 (34%), Gaps = 6/154 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
           D           + AGL +S  + ++  QS    +R   + +      G SLSE+ ++  
Sbjct: 71  DLTVFTRQFATMINAGLSLSTCLNILSEQSESKALRQILKEIQRMVDEGSSLSEAFAKFP 130

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +   ++  G L E L  L+  L  ++ ++ K+++          I 
Sbjct: 131 N-----VFSPLYINMVKAAESAGTLDETLERLAVTLEKQQELRRKIKSAMTYPVIVLIIA 185

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
               F + T +     G    +        L+ +
Sbjct: 186 IGAGFGMLTFLVPIFAGMFESMGAQLPLPTLVLL 219



 Score = 41.3 bits (95), Expect = 0.064,   Method: Composition-based stats.
 Identities = 13/134 (9%), Positives = 37/134 (27%), Gaps = 5/134 (3%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           N    +   VR G+P+  A+ +    + + V  +   +   +                  
Sbjct: 277 NFATTLAAQVRTGVPILQALQLAGQTAGNSVFRKAIDLTRQRVREGERI-----APVLKE 331

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +        +    +  G+L + L  ++           +     +E     ++ G + 
Sbjct: 332 TKVFPPMVVHMISIGEESGSLEQMLNKIAEFYEGEVAAAVESLTSLIEPLMMVFVGGIVG 391

Query: 138 FCVSTLVYFTSPGY 151
             +  L       +
Sbjct: 392 GMLIALYLPIFTMF 405


>gi|222479461|ref|YP_002565698.1| type II secretion system protein [Halorubrum lacusprofundi ATCC
           49239]
 gi|222452363|gb|ACM56628.1| type II secretion system protein [Halorubrum lacusprofundi ATCC
           49239]
          Length = 715

 Score = 70.9 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 53/143 (37%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K+R  +     P+ LD +     AG  V  +V  +   + + +  + +R       G  +
Sbjct: 479 KRRVRRIESAVPDFLDRLASVNEAGTSVVGSVRRVADSNLEALTDDLQRTRRDIDWGADV 538

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             ++ R+ R +     S    +I+   +  G++   L   +   R   +++ + + + + 
Sbjct: 539 GTALRRLERRVRSPMTSRAVALITNAMRASGDVGPVLRIAADESRATWSLRRERRQVMLT 598

Query: 126 AKASAWIIGSLPFCVSTLVYFTS 148
                +I   +   +   +  + 
Sbjct: 599 YLIVIYISFLVFLGIIASLSVSF 621



 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 63/183 (34%), Gaps = 8/183 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIET 58
           +      R A+     P  +  +    R+G+P    +  +           +E    +  
Sbjct: 157 LDQRAHARGAEIDATLPRTVAFMYALSRSGMPFPRVMDTLAENEAVYGEAATELSVAVRD 216

Query: 59  QHLGLSLS-ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
            +   + +  ++ R  R  P  +++ F+  ++     G  +S  L++   + ++    K 
Sbjct: 217 MNAFGTDALTALQRTSRRTPSDDLADFAENLASVLGTGQPISTFLSDQYELYQEEAESKQ 276

Query: 118 KVQALSMEAKASAWIIGSL--PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           +     +   A A++   +  P    T++        + L   P   +++ +       G
Sbjct: 277 QQYLELLSTFAEAYVTALVAGPLFFITILVVIGLVLEDTL---PLLRVVVYLGVPLATFG 333

Query: 176 IMV 178
            +V
Sbjct: 334 FVV 336


>gi|163781562|ref|ZP_02176562.1| fimbrial assembly protein PilC [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882782|gb|EDP76286.1| fimbrial assembly protein PilC [Hydrogenivirga sp. 128-5-R1-1]
          Length = 415

 Score = 70.9 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 59/179 (32%), Gaps = 13/179 (7%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
             D       +   V AG+ + DA+ ++  Q  +  +      V +    G+S+SE++S+
Sbjct: 74  DRDIALFCRQLGAMVNAGVGIIDALDIVAEQMPNKKLAEAVAEVAKEVSEGMSMSEAMSK 133

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P          +    +  G L  AL   S        +K+K+++ +        
Sbjct: 134 RANIFP-----ELVVNLVAVGEETGELDRALLRASEYYEKLAMIKSKIKSAAFYPVFVLV 188

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-------AFMLIGIMVMRLMI 183
           I   +   +   +  T     +           + +            +IG +V+  ++
Sbjct: 189 IATVIVTGILYFLVPTFAQIYSGFGAALPTPTQILINMSNALRENILYIIGGIVVFSVV 247



 Score = 42.8 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/128 (10%), Positives = 38/128 (29%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +     +G+ +  A+ V    + + V  E    +E     ++  +++   +       
Sbjct: 286 RTMATLFSSGVSIERALEVAGKVTGNLVIQE---AVEKVRKEVTEGQAMWSSMEKTGQ-- 340

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
                  +    +  G L E L  ++R   D  +   +     +E      +   +   +
Sbjct: 341 FPKLVVAMVKVGEETGRLDEMLDTIARFYEDEVDRTVEGLITLIEPMLIVVLGSIVGGIL 400

Query: 141 STLVYFTS 148
             L     
Sbjct: 401 IALYMPIF 408


>gi|186477816|ref|YP_001859286.1| general secretion pathway protein F [Burkholderia phymatum STM815]
 gi|184194275|gb|ACC72240.1| general secretion pathway protein F [Burkholderia phymatum STM815]
          Length = 405

 Score = 70.9 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 60/184 (32%), Gaps = 12/184 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +   + +R              +   + AGLP+ +A++V+  QS  D +R     +    
Sbjct: 59  LGRKLSQREQAI------LTRQLASLLIAGLPLDEALSVLTEQSERDYIRELMAAIRAEV 112

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G SL+ ++S+  +     +       +    +  G L   L+ L+  +  R  +K K+
Sbjct: 113 LGGHSLANALSQHPK-----DFPDIYRALVAAGEHTGKLGLVLSRLADYIEQRNALKQKI 167

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
                       I   +   + + V                   ++ +A +  +      
Sbjct: 168 ILAFTYPTIVTIIAFGIVTFLLSYVVPQVVNVFASTKQQLPFLTIMMMALSGFVRNYWWA 227

Query: 180 RLMI 183
            L+ 
Sbjct: 228 MLIA 231



 Score = 35.5 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 38/130 (29%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       S+  +R      I     G SLS ++     + P
Sbjct: 274 FASTLGILTAAGVPILRALQAASETLSNRAMRDNIDDAIVRVREGTSLSRALGNTKTFPP 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G+++  L   +         +       +E      + G + 
Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAAEGEARELERRTMFLTSLLEPLLILAMGGVVL 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 VIVLAVMLPI 397


>gi|330890704|gb|EGH23365.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 406

 Score = 70.9 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 20/180 (11%), Positives = 51/180 (28%), Gaps = 18/180 (10%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73
           D       +   ++AG+P+  +  +I   + +P        + +    G S + ++ +  
Sbjct: 67  DIAFFSRQMATMMKAGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRQKP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G L   L  ++      + +KAK++       A   + 
Sbjct: 127 E-----YFDDLFCNLVDAGEQAGALESLLDRVASYKEKTERLKAKIKKAMTYPTAVLIVA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA------------AFMLIGIMVMRL 181
             +   +   V             +     L+ +A             A   I   + + 
Sbjct: 182 FIVSGILLIKVVPQFQSVFAGFNAELPAFTLMVIALSEVVQQWWLAIVALFFISFFMFKR 241


>gi|90412171|ref|ZP_01220177.1| hypothetical Flp pilus assembly protein TadC [Photobacterium
           profundum 3TCK]
 gi|90326895|gb|EAS43280.1| hypothetical Flp pilus assembly protein TadC [Photobacterium
           profundum 3TCK]
          Length = 283

 Score = 70.9 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 62/156 (39%), Gaps = 4/156 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI--ET 58
           +    K    K     P  LD++   V+ G+ +  A+  +  +     +     +     
Sbjct: 124 LSMRKKALILKTSRQLPYMLDMMSVCVQTGMTIEAALTYLSIELEAFDKDLCFHIKKTAD 183

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
                 L +++  +   +P  +V  F+  +    Q G +++  L+ L+  +R  + +  +
Sbjct: 184 GARVKGLEKALIELSERIPTPDVRSFTLTLIQNLQYGTSIANVLSALAEDMRKMQVLTME 243

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
            +   + AK S  +I  + F +  L+   +PG M +
Sbjct: 244 EKIGKLAAKMSVPLILLIMFPIVILI--LAPGMMQM 277


>gi|170728734|ref|YP_001762760.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
 gi|169814081|gb|ACA88665.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
          Length = 406

 Score = 70.9 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 20/165 (12%), Positives = 49/165 (29%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
           D+       +    R+G+P+  A+A +   +    ++     + E    G  LS +    
Sbjct: 64  DELQIFSRQMYSLTRSGIPILRAIAGLSETTHSQRMKDALNDISEQLTSGRPLSSA---- 119

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L +A   LS  +   +  + +++A           
Sbjct: 120 -MNHHPDVFDSLFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRIKAAMRYPIFVLMA 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           I      ++ +V        +    D      L +  + + +   
Sbjct: 179 ITLAMVILNIMVIPKFAEMFSRFGADLPWATKLLIGTSNLFVNYW 223



 Score = 43.2 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 10/132 (7%), Positives = 36/132 (27%), Gaps = 5/132 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                      + AG+P++ A++++     +    +    +        +    S +   
Sbjct: 269 LSRYCRSFSMMLSAGVPMTQALSLVADAVDNAYMHDRIVAMRR-----GIESGDSMLRVC 323

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                 +     +    +  G + + L + +       +   K     +E     ++ G 
Sbjct: 324 NQSHLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGFVAGI 383

Query: 136 LPFCVSTLVYFT 147
           +      +    
Sbjct: 384 VLILALGIYLPM 395


>gi|301629343|ref|XP_002943802.1| PREDICTED: general secretion pathway protein F-like [Xenopus
           (Silurana) tropicalis]
          Length = 308

 Score = 70.9 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 62/176 (35%), Gaps = 14/176 (7%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74
                  +   V +GLP+  A+  +  ++ D         +    + G S + ++++  R
Sbjct: 71  LAVWTRQLAGLVASGLPLERALTALADEAEDERQHHLVAALRAEVNAGSSFARALTQHPR 130

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                E S     +    +  G+L   L  L+  L +R+ ++AK+   ++       +  
Sbjct: 131 -----EFSDIYCAVIGAGEASGSLGLVLERLADDLEERQQLRAKIIGAALYPA---IVTV 182

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-----IGIMVMRLMINF 185
                V  LV +  P    V     R    L VA   +       G +++  ++  
Sbjct: 183 VALVIVLFLVGYVVPQVAGVFAGTKRALPWLTVAMMAVSDTVRHYGWLMLIALVLI 238


>gi|283777928|ref|YP_003368683.1| type II secretion system protein [Pirellula staleyi DSM 6068]
 gi|283436381|gb|ADB14823.1| type II secretion system protein [Pirellula staleyi DSM 6068]
          Length = 326

 Score = 70.9 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 65/147 (44%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + +   KR  +      + LD++V  +  G+ +  A++ +  +       + +E   V+ 
Sbjct: 155 LAYYRAKRQRQLRTSLADFLDLMVTCLEGGVGMQAAISQVADELRTPHPILATELLVVLR 214

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G S+  +++ +     L+E+   +T +    + G  +++A+  LS +LR ++  +A
Sbjct: 215 EVEVGRSIEVALAHLAERTGLEELRSLATFVQQAQRFGSTMADAMRELSDMLRTQRETRA 274

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +A     K     +  +   V  ++
Sbjct: 275 EERAQKASVKILIPTLLFIFPTVFVVL 301


>gi|257053876|ref|YP_003131709.1| type II secretion system protein [Halorhabdus utahensis DSM 12940]
 gi|256692639|gb|ACV12976.1| type II secretion system protein [Halorhabdus utahensis DSM 12940]
          Length = 802

 Score = 70.9 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 50/144 (34%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ +  +R  +     P  L+ +     AG+   +++  +       +  E  R+     
Sbjct: 461 VREIYSRRIDRIEAATPELLERLASLNEAGMSFVESLDRVRDSDLGVLTDEVDRIWTDIS 520

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G +  +++ R  + +    ++   T++    +  G L   L   S   R    ++ + +
Sbjct: 521 MGANSPDALRRFGQRVRTASIARVVTLLMHAMRASGRLGPVLRIASSQARSDLELRRERR 580

Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144
                     ++   +   +   V
Sbjct: 581 QQMFTYLVVIYVSFFVFLVIIFAV 604



 Score = 44.0 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/182 (11%), Positives = 51/182 (28%), Gaps = 5/182 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQHLGL-S 64
           R     +  P  +       R GL   D +  +    +       E    +    +    
Sbjct: 162 RRRGINEALPRTVAFTYALSRGGLAFPDVMRTLGRNREIYGDAADEVSVAVREMDVFGTD 221

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  +I R     P      F   ++     G ++   L +    L++    + +     +
Sbjct: 222 MISAIRRTAHRSPSDTFRTFGENLASVLASGQHIPAFLEDQYDRLQEEAEQRQEEVLELL 281

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
              A A++   +   +  L       +   +        LL      +   + V+ L+  
Sbjct: 282 ATIAEAYVTTLVAGVLFLLTILLV--FGLTVTETLPFLQLLTYLIIPLSNALFVVFLVQK 339

Query: 185 FD 186
            +
Sbjct: 340 LE 341


>gi|225851038|ref|YP_002731272.1| type IV pilus biogenesis protein PilC [Persephonella marina EX-H1]
 gi|225646001|gb|ACO04187.1| type IV pilus biogenesis protein PilC [Persephonella marina EX-H1]
          Length = 400

 Score = 70.9 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 56/156 (35%), Gaps = 6/156 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
             D       +   + AG+ +++A+ ++  Q  +  +    + V E    G+SL++++ +
Sbjct: 61  EKDLAIFTRQLGAMISAGVGIAEALEILSEQIPNKTLADALKSVKEDVMAGMSLAKAMEK 120

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P      F   ++  ++  GNL   L   +        +K K+ + S        
Sbjct: 121 HPKAFP-----EFLVNLTAAAEESGNLDVILKRATVYYEKIAAIKRKLISASWYPAMVVV 175

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
           I   +   + T +  T       + ++        +
Sbjct: 176 IATVIVLGILTFIVPTFAQLYKGMGSELPFLTQFLI 211



 Score = 40.1 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 42/130 (32%), Gaps = 6/130 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   V  G+P+  A+ +    + + V      + ++ +      E   ++ + +  
Sbjct: 270 FSRTLSTLVSGGVPIIRALEIASTVAGNVV------IEKSINKTKDEVEKGKQIYQSLDP 323

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +        +    +  G L E L  ++    D  +   +    ++E     +I G +  
Sbjct: 324 KLFPPIFIAMVRVGENTGRLDEMLDTIADFFEDEVDRAVEGLLSTIEPLLMVFIGGIVGV 383

Query: 139 CVSTLVYFTS 148
            +  L     
Sbjct: 384 ILVGLYLPIF 393


>gi|317124421|ref|YP_004098533.1| type II secretion system F domain [Intrasporangium calvum DSM
           43043]
 gi|315588509|gb|ADU47806.1| Type II secretion system F domain [Intrasporangium calvum DSM
           43043]
          Length = 314

 Score = 70.9 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 57/154 (37%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R  + L +FP   +++  +V AG   + A+  +   S   +  E RR +    
Sbjct: 159 LSRAARRREQRMLAEFPTVAELLALAVSAGEGATGALERVCRLSDGELADELRRCLADAR 218

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +L  ++  +     L  +S F   I V  + G  L++ L   ++ +R+        Q
Sbjct: 219 AGANLPTALQGLADRTGLPSLSRFVDGIVVAVERGTPLADVLRAQAQDVREDGRRVLMEQ 278

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
               E      ++  +         +    ++  
Sbjct: 279 GGKREIVMMVPVVFLILPVTVLFAIYPGLSFLRF 312


>gi|318062247|ref|ZP_07980968.1| integral membrane protein [Streptomyces sp. SA3_actG]
 gi|318080605|ref|ZP_07987937.1| integral membrane protein [Streptomyces sp. SA3_actF]
          Length = 351

 Score = 70.9 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 19/184 (10%), Positives = 66/184 (35%), Gaps = 2/184 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             ++   + ++      + +  ++   + +  A+      ++  +R     +++      
Sbjct: 126 REERTQMRRVEALATWTESLRDTIAGAVGLEQAIPASARAAAPALRPHLEALVDRLRART 185

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            L +++  +   +           + +     G  L + L  L++  R+  +M+ +V A 
Sbjct: 186 PLPDALQFLADEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQ 245

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
               + S  I+ ++       +   +  +++   N P G ++L        +G   +R +
Sbjct: 246 RAATRRSVQIVVAVSVLFVLGLAIFNKDFVSP-YNSPVGQVVLAGVCGLFALGFWWLRKL 304

Query: 183 INFD 186
              +
Sbjct: 305 STIE 308


>gi|114705450|ref|ZP_01438358.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506]
 gi|114540235|gb|EAU43355.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506]
          Length = 328

 Score = 70.9 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 64/159 (40%), Gaps = 4/159 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +++   KR A     +P+ALD+++  V +G  +  +   +  +    S  +  E      
Sbjct: 170 LRNAATKRQASIQRAWPDALDLLLICVESGKSIEASFRKVAEEIGIQSIALAEELMLTCA 229

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   ++    L+ V    T ++   + G  +  AL  +++  RD +   A
Sbjct: 230 ELSYLPERRTAYDNLILRTDLEGVRATMTALTQAERYGTPIGSALRTMAQENRDLRMNAA 289

Query: 118 KVQALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A ++  K     I+  LP  ++ ++   +   ++ +
Sbjct: 290 EKKAAALPPKLTVPMIVFFLPVLMAIILAPAAISMIDAM 328


>gi|220922536|ref|YP_002497838.1| type II secretion system protein [Methylobacterium nodulans ORS
           2060]
 gi|219947143|gb|ACL57535.1| type II secretion system protein [Methylobacterium nodulans ORS
           2060]
          Length = 303

 Score = 70.9 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 67/161 (41%), Gaps = 3/161 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIET 58
           +    + +   +   FP+ LD++V  V AGL +  A   +  +      +R     +   
Sbjct: 143 VSRRQRLQKEAYRSAFPDMLDLLVVCVDAGLSLEAAFDRVGSEMDESGALRVNLAIMASE 202

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G    + +  +   + + E   F+ ++    +LG ++S++L   S  +R+++ M+A+
Sbjct: 203 LRNGRGFVDGLQGLAERLDIDEARSFAILLQQSLELGTDISQSLRVYSDEMRNKRMMRAE 262

Query: 119 VQALSMEAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLIND 158
            +A ++  K    +   + P  +  ++       + VL   
Sbjct: 263 EKANALPVKIVLPLGAFIFPVILIVVMVPIVIRIIAVLGRS 303


>gi|163751752|ref|ZP_02158970.1| hypothetical putative tight adherence TadC-related transmembrane
           protein [Shewanella benthica KT99]
 gi|161328404|gb|EDP99563.1| hypothetical putative tight adherence TadC-related transmembrane
           protein [Shewanella benthica KT99]
          Length = 322

 Score = 70.9 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 67/158 (42%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++HL  +R       FP+ALD++V    AGL +  A+  +  +   S   + SE   V  
Sbjct: 160 LQHLASRRMKNLRAGFPDALDLLVVCCEAGLGLLAALQRVANELAISHASLASELDLVCS 219

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL++  ++        L+++   ++ IS   +LG  ++  L   S   RD++   A
Sbjct: 220 KVRAGLTIKVALQEFTERTGLEDIKGLNSAISQSIRLGTGIAATLRIFSDEYRDKRLQDA 279

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + QA  +  K    ++  +       +    P  + V+
Sbjct: 280 EEQAAKLAVKMIFPMMLCIWPS--FFIVAVGPAVLKVM 315


>gi|170694277|ref|ZP_02885431.1| general secretion pathway protein F [Burkholderia graminis C4D1M]
 gi|170140700|gb|EDT08874.1| general secretion pathway protein F [Burkholderia graminis C4D1M]
          Length = 405

 Score = 70.9 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 60/184 (32%), Gaps = 12/184 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +   + +R              +   + AGLP+ +A+AV+  QS  D +R     +    
Sbjct: 59  LGRRLSQREQAI------LTRQLASLLIAGLPLDEALAVLTEQSERDYIRELMAAIRAEV 112

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G SL+ ++++  +     +       +    +  G L   L+ L+  +  R  +K K+
Sbjct: 113 LGGHSLANALTQHPK-----DFPEIYRALVAAGEHTGKLGLVLSRLADYIEQRNALKQKI 167

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
                       I   +   + + V                   ++ +A +  +      
Sbjct: 168 VLAFTYPTIVTIIAFGIVTFLLSYVVPQVVNVFASTKQQLPFLTIMMMALSGFVRNWWWA 227

Query: 180 RLMI 183
            L+ 
Sbjct: 228 VLIA 231



 Score = 35.9 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 36/130 (27%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       S+          I     G SLS ++     + P
Sbjct: 274 FASTLGILTAAGVPILRALQAAAETLSNTAMRGNIDDAIVRVREGTSLSRALGNTKTFPP 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G+++  L   +         +       +E      + G + 
Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAADGEARELERRTMFLTSLLEPLLILAMGGVVL 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 VIVLAVMLPI 397


>gi|56477900|ref|YP_159489.1| type IV fimbrial biogenesis protein, pilC [Aromatoleum aromaticum
           EbN1]
 gi|56313943|emb|CAI08588.1| type IV fimbrial biogenesis protein,PilC [Aromatoleum aromaticum
           EbN1]
          Length = 411

 Score = 70.9 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 54/181 (29%), Gaps = 7/181 (3%)

Query: 1   MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAV-IVGQSSDPVRSEFRRVIET 58
           ++     R  K    D       +   +++G+P+  A  + I G  +  +      V   
Sbjct: 58  VRKQKMSRGHKITDKDIALFTRQLATMMKSGVPLLQAFDIGIKGSGNPSLARLLNEVRTD 117

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G SLS++ +R                +    +  G L   L  ++        +K K
Sbjct: 118 VETGSSLSQAFARHPL-----YFDKLFCNLVAAGEQAGILDGLLDRIATYKEKVLAIKGK 172

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +++      A   +   +   +   V             D     L+ +A +   +    
Sbjct: 173 IKSAMFYPIAVVVVAAIVVTVIMLFVVPEFKKVFTSFGADLPAPTLMVIAISDAFVAYWY 232

Query: 179 M 179
           +
Sbjct: 233 I 233



 Score = 38.6 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 42/142 (29%), Gaps = 11/142 (7%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLS 66
           R A            +     AG+P+ +A+  + G S + V  +  R++      G SL+
Sbjct: 274 RKATIAR----WTRTLATMFAAGVPLVEALDSVGGASGNHVYVTATRQIQTEVSTGTSLT 329

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++                  +    +  G L   L  ++       +      +  +E 
Sbjct: 330 VAMQNA------TVFPSMVVQMVSIGEESGQLDSMLGKVADFFEQEVDDAVAGLSTLLEP 383

Query: 127 KASAWIIGSLPFCVSTLVYFTS 148
               ++   +   V  +     
Sbjct: 384 IIMVFLGVVIGGLVVAMYLPIF 405


>gi|51891530|ref|YP_074221.1| hypothetical protein STH392 [Symbiobacterium thermophilum IAM
           14863]
 gi|51855219|dbj|BAD39377.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 289

 Score = 70.9 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 58/145 (40%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  + +RT     + P  + ++   + AGL +++AV  +  +S   +  E  R +    
Sbjct: 131 LRRRVSERTRILRRELPRFVHLLATCLEAGLGLTEAVRRVAAESPGLLAGEMLRAVHEMA 190

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G     +   +       E+    + +    + G +++E L    R +R+RK  +A+ +
Sbjct: 191 AGKPAQRAWRDLTERHESPELKEVVSALQQSHRWGVSIAEQLRFTLRTMRERKQQQAQQK 250

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145
           A     +    ++  +      ++ 
Sbjct: 251 AHEASVRMRVPMVALILMPTIVIIL 275


>gi|237802035|ref|ZP_04590496.1| type II secretion system protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331024891|gb|EGI04947.1| type II secretion system protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 405

 Score = 70.9 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 16/164 (9%), Positives = 47/164 (28%), Gaps = 4/164 (2%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           D       +   ++AG+P+  +  +I   + +P        ++ +    +          
Sbjct: 67  DIAFFSRQMATMMKAGVPLLQSFDIISEGAENPNMRVLVNSLKQEVSAGN----SFATAL 122

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
               +        +    +  G L   L  ++R     + +KAK++       A   +  
Sbjct: 123 RQKPEYFDDLFCNLVDAGEQAGALESLLDRVARYKEKTEKLKAKIKKAMTYPIAVLIVAM 182

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            +   +   V                   L+ +  + ++    +
Sbjct: 183 IVSGILLIKVVPQFQSVFASFGAQLPTFTLMVIGLSDVVQKWWL 226



 Score = 38.6 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 43/129 (33%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +  +  AG+P+ +A+  + G + + V      +V +    G+ L+ S+          
Sbjct: 277 RTLATTFAAGVPLVEALDSVAGATGNVVFKNAVNKVKQDVSTGMQLNFSMRSTG------ 330

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +  ++   +  G L   L  ++    D  +         ME    A++   +   
Sbjct: 331 VFPSLAIQMTAIGEESGALDTMLDKVATYYEDEVDNMVDNLTSLMEPMIMAFLGVIVGGL 390

Query: 140 VSTLVYFTS 148
           V  +     
Sbjct: 391 VIAMYLPIF 399


>gi|312621086|ref|YP_003993814.1| type ii/iv secretion system protein tadc,associated with flp pilus
           assembly [Photobacterium damselae subsp. damselae]
 gi|311872807|emb|CBX86898.1| Type II/IV secretion system protein TadC,associated with Flp pilus
           assembly [Photobacterium damselae subsp. damselae]
          Length = 303

 Score = 70.5 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 62/157 (39%), Gaps = 4/157 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +    K    K     P  LD++   V+ G+ +  +++ +  +     R     +     
Sbjct: 146 LAQKSKTLRHKISGQLPYLLDLLAMCVQTGMTIESSMSYLSREMKGFDRDLSHLLTRTND 205

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +   + L +++  +   +P  E+  F   I    Q G ++   L  L+  +RD + +  +
Sbjct: 206 RARIIGLEQALDELYIRVPTNEMRSFVMTIKQSLQYGSSIYNILTTLAADIRDMRMLTLE 265

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            +   + AK S  +I  +   +  L+    PG + +L
Sbjct: 266 EKIGKLAAKMSIPLILFILIPIVILIAA--PGVLRML 300


>gi|269105136|ref|ZP_06157830.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268160586|gb|EEZ39085.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 293

 Score = 70.5 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 62/157 (39%), Gaps = 4/157 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +    K    K     P  LD++   V+ G+ +  +++ +  +     R     +     
Sbjct: 136 LAQKSKTLRHKISGQLPYLLDLLAMCVQTGMTIESSMSYLSREMKGFDRDLSHLLTRTND 195

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +   + L +++  +   +P  E+  F   I    Q G ++   L  L+  +RD + +  +
Sbjct: 196 RARIIGLEQALDELYIRVPTNEMRSFVMTIKQSLQYGSSIYNILTTLAADIRDMRMLTLE 255

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            +   + AK S  +I  +   +  L+    PG + +L
Sbjct: 256 EKIGKLAAKMSIPLILFILIPIVILIAA--PGVLRML 290


>gi|257791502|ref|YP_003182108.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|257475399|gb|ACV55719.1| type II secretion system protein [Eggerthella lenta DSM 2243]
          Length = 295

 Score = 70.5 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 57/144 (39%), Gaps = 1/144 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
              +R      +  + +D++  SV AGL +  A+  +  +    +  E        +L  
Sbjct: 137 KRNERQEAINRELASVIDLLSISVEAGLTMERAMRHVSERLDGTLCKEIALCERDINLLG 196

Query: 64  -SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S  +++ R+      + VS F + + V ++ G ++S  L   + + R+R+    + +  
Sbjct: 197 YSREDALRRLADRCQTEGVSMFVSSVIVSAKSGSSISRVLKMQASVARNRQFTALEEKVE 256

Query: 123 SMEAKASAWIIGSLPFCVSTLVYF 146
            +  K    +   +   +  +V  
Sbjct: 257 KLPTKMIFPMSMFIMPSLMLIVMA 280


>gi|226943335|ref|YP_002798408.1| type IV pilus biogenesis protein [Azotobacter vinelandii DJ]
 gi|226718262|gb|ACO77433.1| type IV pilus biogenesis protein [Azotobacter vinelandii DJ]
          Length = 405

 Score = 70.5 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 51/174 (29%), Gaps = 7/174 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   ++AG+P+  A  +I        +R     V +    G   + S+ +  
Sbjct: 67  DIALFTRQMATMMKAGVPLLQAFDIISEGFDKPAMRKLVDEVKQEVAAGNGFAASLRKKP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G L   L  ++      + +KA+++       A   + 
Sbjct: 127 R-----YFDNLYCNLVESGEQSGALESLLERIATYKEKTEALKARIKKAMTYPIAVILVA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
            ++   +   V             +     LL V     ++       ++   +
Sbjct: 182 IAVSAILLIKVVPQFQSVFANFGAELPALTLLVVNL-SEVLQEYWFYALLGIPI 234



 Score = 36.3 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 41/131 (31%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +  +  AG+P+ DA+  + G + + V      +V      G+ L+ S+        
Sbjct: 275 FARTLSTTFAAGVPLVDALDSVAGATGNVVFRNATEKVKADVTTGMQLNFSMRTTG---- 330

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +  ++   +  G L E L  ++       +         +E    A +   + 
Sbjct: 331 --TFPSMAIQMTAIGEESGTLDEMLDKVAGFYEAEVDNMVDSLTGLLEPMIMAVLGVLVG 388

Query: 138 FCVSTLVYFTS 148
             +  +     
Sbjct: 389 GLIVAMYLPIF 399


>gi|172058131|ref|YP_001814591.1| type II secretion system protein [Exiguobacterium sibiricum 255-15]
 gi|171990652|gb|ACB61574.1| type II secretion system protein [Exiguobacterium sibiricum 255-15]
          Length = 395

 Score = 70.5 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 66/173 (38%), Gaps = 6/173 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
           +            VR+G+ +  A  ++  Q+   P+      V +    G+  S++I + 
Sbjct: 54  EHLVMYARQFATLVRSGVSIVKATEILRKQTDSKPLERALVEVEDDLRSGIQFSQAIEKH 113

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R         F   +++  +  GNL EAL N+   L+ +  +K KV +  +     + +
Sbjct: 114 PR-----VFDTFFVSMAMAGEASGNLEEALDNIVTQLQKQYEIKRKVISALIYPAVVSIV 168

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              +   +   V  T     + L ++      + VA +   +    + L+I F
Sbjct: 169 AIGVVVFLMLNVVPTFASIFDQLGSELPLITKIVVAVSDFFVAYWWVLLLIAF 221


>gi|146329906|ref|YP_001210009.1| type IV fimbrial biogenesis protein FimO [Dichelobacter nodosus
           VCS1703A]
 gi|790210|gb|AAB65806.1| FimO [Dichelobacter nodosus]
 gi|146233376|gb|ABQ14354.1| type IV fimbrial biogenesis protein FimO [Dichelobacter nodosus
           VCS1703A]
          Length = 407

 Score = 70.5 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 56/175 (32%), Gaps = 9/175 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHLGLSLSESIS 70
             D       +   +RAG+PV  A+ ++    +    ++     V E    G + +E++S
Sbjct: 66  SKDIVFFTRQMSTMLRAGMPVLRALDLVGQSIEKPKAMQEMVFDVHEKIQNGATFAEALS 125

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
               +            +    +  G L + + +++  L   + +K K++          
Sbjct: 126 SHPLH-----FDSLYVSLVAAGEEAGMLDKTMDDIAVNLEKGEAVKKKIKKALQYPAIVM 180

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI--GIMVMRLMI 183
                +   +   V      +             + V  +   +  GI  + L++
Sbjct: 181 LFAIVVTAVLMIKVVPVFAEFFESNGGTLPAPTQMVVKISHFFVNKGIYFLMLIV 235



 Score = 41.6 bits (96), Expect = 0.046,   Method: Composition-based stats.
 Identities = 13/131 (9%), Positives = 41/131 (31%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+   +      + + +  E    + +    G  +S ++        
Sbjct: 277 FSRTMATLFDAGVPLMKGLEATAPATGNIIYEEAVYNIRDDVQNGQQMSFAMKNTGL--- 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +  ++   +  GNL E L  ++    +  + + +     +E    A++   + 
Sbjct: 334 ---FPTIAVQMTAIGEESGNLGEMLGRVASFYEEELDWRIEGLTAMIEPLIMAFLAVVVG 390

Query: 138 FCVSTLVYFTS 148
             +  +     
Sbjct: 391 GLLIAMYLPIF 401


>gi|66044052|ref|YP_233893.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           B728a]
 gi|63254759|gb|AAY35855.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           B728a]
          Length = 405

 Score = 70.5 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 17/165 (10%), Positives = 49/165 (29%), Gaps = 6/165 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73
           D       +   ++AG+P+  +  +I   + +P        + +    G S + ++ +  
Sbjct: 67  DIAFFSRQMATMMKAGVPLLQSFDIISEGAENPNMRALVGSLKQEVSAGNSFATALRQKP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G L   L  ++      + +KAK++       A   + 
Sbjct: 127 E-----YFDDLFCNLVDAGEQAGALESLLDRVASYKEKTEKLKAKIKKAMTYPIAVLIVA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             +   +   V                   L+ +  + ++    +
Sbjct: 182 LIVSGILLIKVVPQFQSVFASFGAQLPTFTLMVIGLSDVVQKWWL 226



 Score = 38.6 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/128 (11%), Positives = 38/128 (29%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +  +  AG+P+ +A+  + G + + V            +   +S  +           
Sbjct: 277 RTLATTFAAGVPLVEALDSVAGATGNVVFK-----NAVIKVKQDVSTGMQLNFSMRSTGV 331

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
               +  ++   +  G L   L  ++    D  +         ME    A++   +   V
Sbjct: 332 FPSLAIQMTAIGEESGALDTMLDKVATYYEDEVDNMVDNLTSLMEPMIMAFLGVIVGGLV 391

Query: 141 STLVYFTS 148
             +     
Sbjct: 392 IAMYLPIF 399


>gi|294649076|ref|ZP_06726520.1| type IV fimbrial assembly protein PilC [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292825037|gb|EFF83796.1| type IV fimbrial assembly protein PilC [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 409

 Score = 70.5 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 18/193 (9%), Positives = 56/193 (29%), Gaps = 15/193 (7%)

Query: 1   MKHLIKKRTAKFL---------DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51
           +K++ +KR               D       +   ++AG+P+     ++     +P   E
Sbjct: 47  IKNIREKRKNILEGLMKKKVTTLDITVFTRQLATMMKAGVPLVQGFEIVAEGLENPSMRE 106

Query: 52  FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
               +      G + + ++ +  +             +    +  G L   L  ++    
Sbjct: 107 VVLGLKGEVEGGNTFAGALRKYPQ-----YFDNLFCSLVESGEQSGALETMLDRVAIYKE 161

Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             + +K K++           +   +   +   V        +    D      + V  +
Sbjct: 162 KSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMS 221

Query: 171 FMLIGIMVMRLMI 183
             +     + +++
Sbjct: 222 MWMQEYWFILIIV 234



 Score = 34.3 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 37/128 (28%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +  +  AG+P+ DA+    G +++ V  E    I          +   R     P   
Sbjct: 280 RTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVATGQQLQFAMRASNRFP--- 336

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
               +  +    +  G L   L  ++    +  +         ME    A +   +   V
Sbjct: 337 --SMAIQMVAIGEESGALDSMLDKVATHFENEVDNAVDGLTSMMEPLIMAILGVLVGGLV 394

Query: 141 STLVYFTS 148
             +     
Sbjct: 395 VAMYLPIF 402


>gi|323527883|ref|YP_004230036.1| general secretion pathway protein F [Burkholderia sp. CCGE1001]
 gi|323384885|gb|ADX56976.1| general secretion pathway protein F [Burkholderia sp. CCGE1001]
          Length = 405

 Score = 70.5 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 60/184 (32%), Gaps = 12/184 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +   + +R              +   + AGLP+ +A+AV+  QS  D +R     +    
Sbjct: 59  LGRRLSQREQAI------LTRQLASLLIAGLPLDEALAVLTEQSERDYIRELMAAIRAEV 112

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G SL+ ++S+  +     +       +    +  G L   L+ L+  +  R  +K K+
Sbjct: 113 LGGHSLANALSQHPK-----DFPEIYRALVAAGEHTGKLGLVLSRLADYIEQRNALKQKI 167

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
                       I   +   + + V                   ++ +A +  +      
Sbjct: 168 VLAFTYPTIVTIIAFGIVTFLLSYVVPQVVNVFASTKQQLPFLTIMMMALSGFVRNWWWA 227

Query: 180 RLMI 183
            L+ 
Sbjct: 228 VLIA 231



 Score = 35.5 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 36/130 (27%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       S+          I     G SLS ++     + P
Sbjct: 274 FASTLGILTAAGVPILRALQAAAETLSNTAMRGNIDDAIVRVREGTSLSRALGNTKTFPP 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G+++  L   +         +       +E      + G + 
Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAAEGEARELERRTMFLTSLLEPLLILAMGGVVL 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 VIVLAVMLPI 397


>gi|206901854|ref|YP_002250592.1| FimO [Dictyoglomus thermophilum H-6-12]
 gi|206740957|gb|ACI20015.1| FimO [Dictyoglomus thermophilum H-6-12]
          Length = 409

 Score = 70.5 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 52/154 (33%), Gaps = 6/154 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
           D           + AGL +S  + ++  QS    ++   + V      G SLSE+ ++  
Sbjct: 71  DLTVFTRQFATMINAGLSLSTCLNILSEQSESKALKQILKEVQRMVDEGSSLSEAFAKFP 130

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +   ++  G L E L  L+  L  ++ ++ K+++          I 
Sbjct: 131 D-----VFSPLYINMVKAAESAGTLDETLERLAVTLEKQQELRRKIKSAMTYPVIVLIIA 185

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
               F + T +     G    +         + +
Sbjct: 186 IGAGFGMLTFLVPIFAGMFESMGAQLPLPTAILL 219



 Score = 41.3 bits (95), Expect = 0.058,   Method: Composition-based stats.
 Identities = 15/134 (11%), Positives = 40/134 (29%), Gaps = 5/134 (3%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           N    +   VR G+P+  A+ +    + + V  +   +   +         + R  +  P
Sbjct: 277 NFATTLAAQVRTGVPILQALQLAGQTAGNSVFRKAIDLTRQRVREGERIAPVLRETKVFP 336

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G+L + L  ++           +     +E     ++ G + 
Sbjct: 337 P-----MVVHMISIGEESGSLEQMLNKIAEFYEGEVAAAVESLTSLIEPLMMVFVGGIVG 391

Query: 138 FCVSTLVYFTSPGY 151
             +  L       +
Sbjct: 392 GMLIALYLPIFTMF 405


>gi|14521588|ref|NP_127064.1| hypothetical protein PAB1458 [Pyrococcus abyssi GE5]
 gi|5458807|emb|CAB50294.1| Hypothetical protein [Pyrococcus abyssi GE5]
          Length = 355

 Score = 70.5 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 68/181 (37%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K + ++R  +     P  L  +   + AG+ +++ +  +       +  EFR +++  H 
Sbjct: 169 KSVWRRRVEEVERALPYVLRHMASLLNAGIGLAETMVSVAKSDYGVISEEFRMMVQEMHK 228

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S  ++++     M    VS     I    + GGNL++ L  ++        +K     
Sbjct: 229 GSSFEDALASFEEKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIKLMDYV 288

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
             +   +  ++  ++      +V   +       +      + +     F  + ++++ +
Sbjct: 289 QKINGISFVYMFMTVVMPTLLIVVIIAGSIFAKRLIIDMAGLAILFLFGFPALSLIIIVM 348

Query: 182 M 182
           +
Sbjct: 349 I 349


>gi|319783869|ref|YP_004143345.1| type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317169757|gb|ADV13295.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 320

 Score = 70.5 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 70/146 (47%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +   +++R  ++ + FP+ +D+++    AG+ +   +  +  +   +   +    + V  
Sbjct: 163 LSQKVRERRREYRNGFPDFMDLMIVCSDAGMSMEAGIERVSKELAKTYPALSQNLQLVSL 222

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G SL +++  +   + L EV  F+T++    +LG +LS AL   S  +R ++   A
Sbjct: 223 ELRAGRSLDDALKALADRLSLDEVRSFATLLQQSKELGTSLSGALRVFSDDMRHKRMSLA 282

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A ++ AK S  ++  +   V  +
Sbjct: 283 EEKAHALPAKMSVPVVVCILPVVLMI 308


>gi|84623124|ref|YP_450496.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188575724|ref|YP_001912653.1| pilin biogenesis protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|84367064|dbj|BAE68222.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188520176|gb|ACD58121.1| pilin biogenesis protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 419

 Score = 70.5 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 20/173 (11%), Positives = 55/173 (31%), Gaps = 6/173 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            +       +   +++G+P+  ++ +I     +  ++    ++      G SL ESIS+ 
Sbjct: 79  KEIAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLYESISKH 138

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L  ++    + + +K K++           +
Sbjct: 139 PVQ-----FDELYRNLVRAGEGAGVLETVLETVATYKENIEALKGKIKKALFYPAMVVAV 193

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              +   +   V             +      L V A+  ++    + L++  
Sbjct: 194 AIIVSAILLIFVVPQFEEVFKSFGAELPAFTQLLVNASRFMVSYWWLMLIVTV 246



 Score = 38.6 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/137 (10%), Positives = 48/137 (35%), Gaps = 7/137 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISR 71
                        + +AG+P+ +A+ ++ G + + +  E   R+ +   +G  ++ ++ +
Sbjct: 282 NSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEEAVFRMRDDVSVGYPVNMAMKQ 341

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +  +  +         ++   +  G L   L  ++    +  N      +  +E     +
Sbjct: 342 VNLFPHM------VIQMTAIGEEAGALDAMLFKVAEYFEEEVNNAVDALSSLLEPLIMVF 395

Query: 132 IIGSLPFCVSTLVYFTS 148
           I   +   V  +     
Sbjct: 396 IGTIVGGMVIGMYLPIF 412


>gi|332284566|ref|YP_004416477.1| hypothetical protein PT7_1313 [Pusillimonas sp. T7-7]
 gi|330428519|gb|AEC19853.1| hypothetical protein PT7_1313 [Pusillimonas sp. T7-7]
          Length = 291

 Score = 70.5 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 1/147 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +  L ++R  + L +FP  LD+    V AGL +  A+          P+R E R  +   
Sbjct: 134 LHGLARQRQFQMLREFPFLLDMTTLCVEAGLNLHGALQQAAQHGPDGPLRGELRHALADM 193

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G+   +++  +     L  V    T ++   QLG +L   L + S   R  + ++A+ 
Sbjct: 194 RAGVPRIQALQELADRCGLPAVQSLVTALAQADQLGMSLGPLLRSQSEQRRAERFLRAEK 253

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146
            AL    K    ++  +  C   ++ F
Sbjct: 254 LALEAPVKMLFPMVFCIFPCTFLIIGF 280


>gi|121607251|ref|YP_995058.1| type II secretion system protein [Verminephrobacter eiseniae
           EF01-2]
 gi|121551891|gb|ABM56040.1| type II secretion system protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 313

 Score = 70.5 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 1/147 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAV-AVIVGQSSDPVRSEFRRVIETQ 59
           +K  I  R  + L   P  LDII   V AGL +  A+   +       VR EF+RV+   
Sbjct: 156 LKDRIALRRRELLRMMPFFLDIITLCVEAGLNMHGAIAQAVAKGPQGTVREEFQRVLRDV 215

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G + +ES+  M   +    V+ F   +    ++G NL   L   +   R  + ++A+ 
Sbjct: 216 RAGKARTESLRDMAERLNEPGVTQFVMAVIQAERMGMNLGPVLRAQADQQRSERFLRAEK 275

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146
            A+    K    +I  +  C   ++ F
Sbjct: 276 LAMEAPVKMLLPLIAFIFPCTFIVLLF 302


>gi|325958219|ref|YP_004289685.1| type ii secretion system F domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325329651|gb|ADZ08713.1| Type II secretion system F domain protein [Methanobacterium sp.
           AL-21]
          Length = 371

 Score = 70.5 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 74/177 (41%), Gaps = 2/177 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R+ +   + P AL  +   +RAG+ + D++  +       +  EF R +E    G +  +
Sbjct: 191 RSNEASRELPFALRQMATELRAGIGMHDSMRSVALSGYGALSEEFARALEEIKYGETTEK 250

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +++ M   +  + +      I+     GG+L++ L  ++        MK K  +  + + 
Sbjct: 251 ALTDMSERVNSEGLKRAIYQITRTLSSGGDLAKTLNVIADDTAYEMRMKLKDYSQKLNSF 310

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI--MVMRLM 182
              ++  ++   V T++   +   +   +  P   ++L +    M++     +++ +
Sbjct: 311 TMIYMFVAILGPVITMIMLIAASTVMGSVLPPMLLLILYLFLFPMIVAFMAFMIKRL 367


>gi|288956974|ref|YP_003447315.1| type II secretion system [Azospirillum sp. B510]
 gi|288909282|dbj|BAI70771.1| type II secretion system [Azospirillum sp. B510]
          Length = 334

 Score = 70.5 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 59/147 (40%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  L K+R +      P+ALD+++    AG  +  ++A +  +       +  E     +
Sbjct: 174 LALLAKRRQSAIARTLPDALDLLIICANAGYSLDLSLARVGREMRLAARAMSEELVITAD 233

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +     E++  +     L+ +      +    + G  L++AL  L+  +R  + M  
Sbjct: 234 ELRVLTDRREALRNLAERNDLEALRSLVATLLQAQKYGTPLTQALRTLAAEMRHARMMAI 293

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +A  + A  S  ++  +   V  +V
Sbjct: 294 EERAARLPALISVPLMVLILPAVFIIV 320


>gi|94265745|ref|ZP_01289481.1| type II secretion system protein [delta proteobacterium MLMS-1]
 gi|93453720|gb|EAT04098.1| type II secretion system protein [delta proteobacterium MLMS-1]
          Length = 402

 Score = 70.5 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 43/149 (28%), Gaps = 4/149 (2%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + AGLP+  ++ ++  Q  +P   +  R + ++    S              
Sbjct: 68  FTRQLSTMIDAGLPLVQSLQILGEQQENPTFKKVLRAVRSEVETGS----TFADALKKHP 123

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    ++GG L    A L+  +   + +K KV+        S  I   +  
Sbjct: 124 HIFDNLYCNMMEAGEVGGILDTICARLATFMEKAQALKKKVKGAMTYPIISLCIALIVLA 183

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
            +   V            +         V
Sbjct: 184 VMLIFVVPVFEEMFADFGSALPAPTQFVV 212



 Score = 40.9 bits (94), Expect = 0.084,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 41/130 (31%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   +++G+P+ +++ V+   + + V            +  S+SE  +        
Sbjct: 271 FSRTLGTMLQSGVPIMESLKVVARTAGNKVVE-----KAVFRVNDSISEGRALAEPLAES 325

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G L   L  ++    +  +   +    S+E     ++ G +  
Sbjct: 326 GVFPGMVVQMINVGESTGALDTMLIKVADFYDEEVDQAVENLTASIEPLMMVFLGGMIGG 385

Query: 139 CVSTLVYFTS 148
            V  +     
Sbjct: 386 LVIAMYLPIF 395


>gi|313672382|ref|YP_004050493.1| type ii secretion system f domain [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939138|gb|ADR18330.1| Type II secretion system F domain [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 407

 Score = 70.5 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 61/189 (32%), Gaps = 12/189 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQ 59
           +   +KK     L++             AG+P+   +  +  Q+      E    +I+  
Sbjct: 54  LSQKLKKYEKVRLEELIVFTRQFASLFAAGIPILTILRRLESQNYSQKMKETISTIIKDI 113

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G  LS +  +          S     +    + GG L   L  L+ IL    + + K+
Sbjct: 114 EAGTPLSIAFRK-----HKDIFSDLYINMLRVGEEGGVLDIVLQRLALILETDLDTRNKI 168

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF---MLIGI 176
           +  +   K    ++ ++      L+ F  P ++ +         L      F        
Sbjct: 169 KNATRYPK---MVVSAIVIAFVILMTFVIPKFVGLFSKFNTELPLPTKILVFVNDFFHNF 225

Query: 177 MVMRLMINF 185
             + L+I+ 
Sbjct: 226 WWLILIISI 234



 Score = 39.3 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/132 (9%), Positives = 40/132 (30%), Gaps = 5/132 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                 I+    ++G+ +  +  ++   + + V  +   +I+ +              +Y
Sbjct: 272 LSRISRILGLLYKSGISIITSFEIVSEVTGNEVIKDELLIIKEKVTRGGTIHGSFEASKY 331

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P        + +    +  G L E L  ++       +   K  + ++E      + G 
Sbjct: 332 FPP-----VVSDMISAGEDTGQLDEMLFKIADYYDSEVDYSIKTLSQAIEPILLVMVAGM 386

Query: 136 LPFCVSTLVYFT 147
           +      +    
Sbjct: 387 VLILALGVFLPM 398


>gi|312793028|ref|YP_004025951.1| type II secretion system f domain [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180168|gb|ADQ40338.1| Type II secretion system F domain [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 403

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 57/164 (34%), Gaps = 6/164 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLS 66
           R    + +       +   + AG+P+  A++VIV Q     +      + ++   G  LS
Sbjct: 57  RKKLSIKELSMFCRQLSTMLMAGIPLITALSVIVEQFKGRAMGKVLEDIYKSVQSGSMLS 116

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +++      P          ++   +L G+L + L  ++        +K K+    +  
Sbjct: 117 RALAEKGECFP-----EILINMTEAGELSGSLDKTLERMATHFEKELKLKQKIVNALIYP 171

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
                +   +   +   V  T  G  + L  D        +AA+
Sbjct: 172 AIVLLVAFGVLVIMLVYVIPTFVGIFDELGVDLPATTKFIIAAS 215



 Score = 34.3 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 37/131 (28%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+ +  A+       ++  +  +F  +I     G  LS  I+       
Sbjct: 271 FARTLATMTSAGVSIIIALETTRNVINNKFIEKKFEDIILRVQRGEGLSFPIAESG---- 326

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                    ++    +  G L   L   +         +        E      + G + 
Sbjct: 327 --IFPRIVEILIRTGEESGTLDSMLEKTADYFESEVENQVTRLTSVFEPLIIVLLAGMVG 384

Query: 138 FCVSTLVYFTS 148
           F VS+++    
Sbjct: 385 FLVSSIILPLF 395


>gi|17547835|ref|NP_521237.1| general secretion pathway protein F [Ralstonia solanacearum
           GMI1000]
 gi|17430140|emb|CAD16825.1| probable general secretory pathway f transmembrane protein
           [Ralstonia solanacearum GMI1000]
          Length = 403

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 60/178 (33%), Gaps = 8/178 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65
           KR +   +        +   + AGLP+ +A+A +  Q+    V      +      G SL
Sbjct: 59  KRLSPQENAL--VTRQLASLLVAGLPLDEALAALADQAERPYVHELLASIRAEVVGGSSL 116

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S ++++  R     +       +    +  GNL   L+ L+  +  R  + +K++     
Sbjct: 117 SVALAQHPR-----DFPDIYRALVSAGEHSGNLGLVLSRLADYIESRNALTSKIKLAFTY 171

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
                 +  ++   + + V                   ++ +  +  +     +  ++
Sbjct: 172 PAIVTVVAFAIVIFLLSYVVPQVVSVFANTKQKLPTLTIIMLWLSDFVRNWGWLAAIV 229


>gi|319943385|ref|ZP_08017667.1| type II secretion system protein [Lautropia mirabilis ATCC 51599]
 gi|319743200|gb|EFV95605.1| type II secretion system protein [Lautropia mirabilis ATCC 51599]
          Length = 298

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 1/147 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           ++ L  +RT +     P  LDII  ++ AG  ++ A+   V +    P+  E RRV+   
Sbjct: 140 LRDLGARRTRQIAKALPFYLDIITLAIEAGSNMTGALQHAVDKGPTGPMSEELRRVLRDI 199

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G + +ES+  +   + +  +S +   I    + G +L   L   +   R+ + M+A+ 
Sbjct: 200 RAGRTRAESLRALAERLRIPAISNWVAAILTAEKQGSSLGPILRAQADQRRNERFMQAEA 259

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146
            AL    K    ++  +  C   +V+F
Sbjct: 260 MALKAPVKMLFPLMICIFPCTFIIVFF 286


>gi|152994352|ref|YP_001339187.1| type II secretion system protein [Marinomonas sp. MWYL1]
 gi|150835276|gb|ABR69252.1| type II secretion system protein [Marinomonas sp. MWYL1]
          Length = 316

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 59/147 (40%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +K     R  +     P+ALD++V    AGLP+      +  +   S+  +  E      
Sbjct: 156 LKMRAASRGGRLSSSLPDALDLMVICAEAGLPLGRIFKTVSKELAFSAPEIAEELGYTHA 215

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +    ++++  +     ++ V    + +    + G  LS+AL  +S   R R  +  
Sbjct: 216 ELQILSDRTKALLNLSERCGVENVEAMVSTLIQAERYGTPLSQALRTISEESRKRLVLDL 275

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +A  + A+ S  ++  +   V  ++
Sbjct: 276 EEKAGKLPAQLSVPLMVFILPPVIAMM 302


>gi|312876911|ref|ZP_07736887.1| Type II secretion system F domain [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796322|gb|EFR12675.1| Type II secretion system F domain [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 403

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 57/164 (34%), Gaps = 6/164 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLS 66
           R    + +       +   + AG+P+  A++VIV Q     +      + ++   G  LS
Sbjct: 57  RKKLSIKELSMFCRQLSTMLMAGIPLITALSVIVEQFKGRAMGKVLEDIYKSVQSGSMLS 116

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +++      P          ++   +L G+L + L  ++        +K K+    +  
Sbjct: 117 RALAEKGECFP-----EILINMTEAGELSGSLDKTLERMATHFEKELKLKQKIVNALIYP 171

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
                +   +   +   V  T  G  + L  D        +AA+
Sbjct: 172 AIVLLVAFGVLVIMLVYVIPTFVGIFDELGVDLPATTKFIIAAS 215


>gi|258593743|emb|CBE70084.1| Type 4 fimbrial assembly protein pilC [NC10 bacterium 'Dutch
           sediment']
          Length = 404

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/185 (11%), Positives = 54/185 (29%), Gaps = 18/185 (9%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSE 67
                 D       +   + AGLP+   +  +  Q  +         + E    G + + 
Sbjct: 59  KKVKDKDLAVFTRQLATMIDAGLPLVQCLDTLASQQPNKGFKNILAEIREDVEGGSTFTT 118

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++ R          +     +    + GG L   L  L+  +     ++ KV+   +   
Sbjct: 119 ALKRHP-----TVFTPLYANMVEAGEAGGMLDTILNRLAVYIEKATTLRRKVKGALIYPS 173

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMN------------VLINDPRGHMLLGVAAAFMLIG 175
               +  ++   +   V     G+              V+         +     F++ G
Sbjct: 174 TIVVVAIAVVVFLLIFVIPVFAGFFEGSGVELPLPTQIVMTLSRLVRTYILACLGFLIAG 233

Query: 176 IMVMR 180
           ++ +R
Sbjct: 234 VVGIR 238


>gi|296129670|ref|YP_003636920.1| Type II secretion system F domain protein [Cellulomonas flavigena
           DSM 20109]
 gi|296021485|gb|ADG74721.1| Type II secretion system F domain protein [Cellulomonas flavigena
           DSM 20109]
          Length = 409

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 56/179 (31%), Gaps = 19/179 (10%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   + +GL +  A+A++V Q+   P+     +V     +G + S ++ + 
Sbjct: 70  KDIAIMSRQLATMIDSGLSLLRALAILVEQTESKPLAKILSQVRNDVEVGTAFSTALGKH 129

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P          +    ++GG L + L +++        ++AK+++          I
Sbjct: 130 PETFPP-----LMVNMVRAGEVGGFLDQTLVSIADNFETEVRLRAKIKSAMAYPVIVLVI 184

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRG-------------HMLLGVAAAFMLIGIMV 178
                  +   +          L  +  G               +       +L G+  
Sbjct: 185 AVLAVVGMLLFIVPVFAEMFAGLGGELPGPTKFLMFLSGMLKWTIGPTVVLLVLAGVWW 243



 Score = 44.3 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/133 (11%), Positives = 36/133 (27%), Gaps = 5/133 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
                   + AG+P+  A+ ++   S + V     + ++      S+    S        
Sbjct: 278 FTRNFGTMIHAGVPLLQALEIVGEASGNIVIERAAKAVQE-----SVRRGESLAGPLSQH 332

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G L   L  ++           +     +E      I   + F
Sbjct: 333 PVFPPMVVQMMAVGEDTGALDTMLGKVADFYDQEVEAMTEQLTSLIEPLMIVVIGAIVGF 392

Query: 139 CVSTLVYFTSPGY 151
            V ++       +
Sbjct: 393 MVISMYMPIFGVF 405


>gi|326797332|ref|YP_004315152.1| type II secretion system F domain protein [Marinomonas mediterranea
           MMB-1]
 gi|326548096|gb|ADZ93316.1| Type II secretion system F domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 316

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 59/147 (40%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +K     R  K     P+ALD++V    AGLP+      +  +   SS  +  E      
Sbjct: 156 LKMRAASRGGKLSSSLPDALDLMVICAEAGLPLGRIFKTVSKELAFSSPELAEEIGYTHA 215

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +    S+++  +     +  V+   + +    + G  LS+AL  +S   R    ++ 
Sbjct: 216 ELQILSDRSKALMNLADRCGVDNVAAMVSTLIQAERYGTPLSQALRTISVESRKNMVLEL 275

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +A  + A+ S  ++  +   V  ++
Sbjct: 276 EEKAGKLPAQLSVPLMVFILPPVIAMM 302


>gi|311105394|ref|YP_003978247.1| type II secretion system protein F domain-containing protein 1
           [Achromobacter xylosoxidans A8]
 gi|310760083|gb|ADP15532.1| bacterial type II secretion system protein F domain protein 1
           [Achromobacter xylosoxidans A8]
          Length = 281

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 82/151 (54%)

Query: 37  VAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG 96
           +  +V QS  P+  EF  ++  Q +G+    ++  +   MP    +     + + +Q GG
Sbjct: 131 LRHVVEQSGAPLAQEFGLMLREQRMGVPWDSALENLRNRMPADSTALVVAAMRIAAQTGG 190

Query: 97  NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
           NL+EAL ++++ LR R  ++AK+ AL+ + +  AWI+GSLP  +  ++    P  M +L 
Sbjct: 191 NLAEALESIAQTLRARLQLQAKLLALTSQGRLQAWIVGSLPLLLLAVLDRLEPEIMGLLW 250

Query: 157 NDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           + P G  +L + A     G++++R ++  D+
Sbjct: 251 HTPVGWGVLTIVAVLETTGMLLIRRIVRIDI 281


>gi|237653361|ref|YP_002889675.1| type II secretion system protein [Thauera sp. MZ1T]
 gi|237624608|gb|ACR01298.1| type II secretion system protein [Thauera sp. MZ1T]
          Length = 301

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 1/156 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +   I+ R    L   P  LD+I   V AGL ++ A+     +    P+  E  RV+   
Sbjct: 144 LDDRIRCRRRLMLKQLPFVLDLITLCVEAGLNLTGALQQAAAKGPAGPLGEELHRVLRDV 203

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G S ++++      +    ++   + +     +G +L   L       R  +  +A+ 
Sbjct: 204 RAGKSRADALRGFADRIGEPAIANLVSTVIQAENMGMSLGPMLRAQGEQRRAERFARAEK 263

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            A+    K    +I  +  C   ++ F        +
Sbjct: 264 AAMEAPVKMLLPLIACIFPCTFIVLGFPIAVKFMTM 299


>gi|289548811|ref|YP_003473799.1| type II secretion system F domain protein [Thermocrinis albus DSM
           14484]
 gi|289182428|gb|ADC89672.1| Type II secretion system F domain protein [Thermocrinis albus DSM
           14484]
          Length = 407

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 57/164 (34%), Gaps = 6/164 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLS 66
           R      D       +   V+AG+P+ +A+ VI  Q  D  +    + V      G+S+S
Sbjct: 61  RRRVSDRDISIFCRQLGTMVQAGVPLVEALNVIAEQMPDRRLSEASQEVARMISEGMSVS 120

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++ +                + +  +  G +  AL   S        +K K+++ S   
Sbjct: 121 AAMRKFP-----HVFPELVVNLMLVGEETGKIDVALLKASEYYEKMATIKGKIKSASFYP 175

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
                +  ++   +   +  T     + L  +      + +AA+
Sbjct: 176 TFVVIVAVTIVSGILYFLVPTFAQIYSSLGGELPLPTQMLIAAS 219



 Score = 35.5 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/134 (8%), Positives = 31/134 (23%), Gaps = 5/134 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                   +     +G+ +  +  +      + +  E         +             
Sbjct: 272 AMAQFARTMATLFSSGVALERSFEISKQVVGNTIIKEALEAAGKGVVEG-----QPMYRA 326

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                        +    +  G L + L  ++R   D  +         +E     +I G
Sbjct: 327 LEKTGVFPKLVVAMVRVGEDTGKLDQMLETIARFYEDEVDRTVDGLIKLIEPMLIVFIGG 386

Query: 135 SLPFCVSTLVYFTS 148
           ++   +  L     
Sbjct: 387 AVGLILIALYMPIF 400


>gi|222111305|ref|YP_002553569.1| type II secretion system protein [Acidovorax ebreus TPSY]
 gi|221730749|gb|ACM33569.1| type II secretion system protein [Acidovorax ebreus TPSY]
          Length = 288

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 61/147 (41%), Gaps = 1/147 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAV-AVIVGQSSDPVRSEFRRVIETQ 59
           +K   K+R    L   P  +D++  S+ AGL +S A+   +   +  P+  E  RV+   
Sbjct: 131 LKETTKQRNLAILKALPFFIDLLTLSIEAGLNLSGAMQQAVAKSAGGPLMVEINRVLRDV 190

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G +  +++      +    ++ F + +    + G +L   L   +   R  + ++A+ 
Sbjct: 191 RAGKARIDALRDFSARLDFTPITSFVSALVQGEKTGSSLGPILRAQAEQRRTERFLRAEK 250

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146
            A+    K    +I  +  C   ++ F
Sbjct: 251 LAMEAPVKMLGPLIFFIFPCTFIVIGF 277


>gi|329900877|ref|ZP_08272626.1| General secretion pathway protein F / Type II secretory pathway,
           component PulF [Oxalobacteraceae bacterium IMCC9480]
 gi|327549350|gb|EGF33921.1| General secretion pathway protein F / Type II secretory pathway,
           component PulF [Oxalobacteraceae bacterium IMCC9480]
          Length = 406

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 57/168 (33%), Gaps = 6/168 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
            ++       +   + A LP+  A + ++ Q+    +R     +      G SLS+++S 
Sbjct: 66  TNELALFTRQLASLLEASLPLEQAFSALLEQAERTYLRDLIASIRSEVMGGSSLSDALSH 125

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             R     + +     +    +  G L++ L+ L+  +  R  +  KV+           
Sbjct: 126 HPR-----DFADIYRALVASGEQIGQLAKVLSRLADYIERRNALVQKVKLAFTYPAIVTV 180

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +  ++   + T V                   +L +A +  +     M
Sbjct: 181 VAFAIVIFLLTYVVPQIVSVFANTKQKLPLLTVLMLAVSDFVRNYGWM 228


>gi|261856174|ref|YP_003263457.1| type II secretion system F domain protein [Halothiobacillus
           neapolitanus c2]
 gi|261836643|gb|ACX96410.1| Type II secretion system F domain protein [Halothiobacillus
           neapolitanus c2]
          Length = 412

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/167 (9%), Positives = 43/167 (25%), Gaps = 5/167 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            D       +   ++AGLP+  A+ ++   +      E    ++        S       
Sbjct: 73  KDIAVLARQLATMMQAGLPIVQALDIMAQSAEKVPMKELISTVKNDVE----SGLTLADA 128

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +        +    +  G+L   L  ++      +++K K++       A   + 
Sbjct: 129 MDKHRKYFDELFVNLVRAGEDSGSLELVLDRIAVYKEKSESLKGKIKKALFYPIAVVVVA 188

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVM 179
             +   +   V                   L  +  +         +
Sbjct: 189 FIVTSILLIFVIPQFQELFQGFGATLPAFTLFVIGISNAFKTNWYWI 235



 Score = 38.9 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 13/135 (9%), Positives = 40/135 (29%), Gaps = 5/135 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                    +     AG+P+ +A+    G + + +  +    +       S  +   +  
Sbjct: 277 AAIARFARTLGTMFSAGVPLVEAMEPTAGSTGNALFKDAVMNMRDIIAAGSPLKVAMQQS 336

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           +  P+         +    +  G L   L  ++ +  +  +      +  +E    A++ 
Sbjct: 337 KLFPV-----MVVQMVAIGEETGALDTMLGKVADMYEEEVDNMVDAMSSLLEPMIMAFLG 391

Query: 134 GSLPFCVSTLVYFTS 148
             +   V  +     
Sbjct: 392 VVVGGLVIAMYLPIF 406


>gi|167746591|ref|ZP_02418718.1| hypothetical protein ANACAC_01301 [Anaerostipes caccae DSM 14662]
 gi|167653551|gb|EDR97680.1| hypothetical protein ANACAC_01301 [Anaerostipes caccae DSM 14662]
          Length = 401

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/200 (11%), Positives = 68/200 (34%), Gaps = 22/200 (11%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRSEFRRVIETQH 60
            L  KR  K      +    +   ++AG+ +  ++ +I  +       +  ++ ++ +  
Sbjct: 49  KLKSKRKMK-ASVLADFCRQLGTLLKAGVSLVRSLNIIANEIGVRSTDKETYQNLLNSIR 107

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ LSE++    R  P+         +   ++  GNL +    ++        +  KV+
Sbjct: 108 QGIPLSEAMDEQGRTFPV-----LLVSMMRSAEANGNLDQTSLRMAEHYEKENRLNGKVR 162

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--------------HMLLG 166
              +     + ++  +   + + +        + + + P                   + 
Sbjct: 163 NAMIYPIVLSVLLVGVIIFILSYLVPQFQDIFDTMESLPLPTVILLGLSGGIRKYWPFIL 222

Query: 167 VAAAFMLIGIMVMRLMINFD 186
           +  A ++ GI ++  +    
Sbjct: 223 LILAAVIFGIRLILRIPKVR 242



 Score = 38.2 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 38/133 (28%), Gaps = 5/133 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     +G+P+  A+ +      +    E            S+    S  V  M +
Sbjct: 267 FARTLCSLYSSGIPIIQAMQIGSSTVGNRYIEEQF-----GQAVDSIRRGESLSVSLMEI 321

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                  +      +  G+L E L +++  L        +     +E      +   + F
Sbjct: 322 DGFQKKLSSAIQVGEETGSLDEMLDSIAESLEFEAERALERLVTLLEPVLIILMAVIIGF 381

Query: 139 CVSTLVYFTSPGY 151
            V  ++      Y
Sbjct: 382 VVVAVILPIYESY 394


>gi|24215073|ref|NP_712554.1| type II secretory pathway component protein F [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45657445|ref|YP_001531.1| general secretory pathway protein F [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24196129|gb|AAN49572.1| type II secretory pathway component protein F [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45600684|gb|AAS70168.1| general secretory pathway protein F [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 408

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 56/168 (33%), Gaps = 6/168 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
             +       +   + AG+P+  +++ IV Q+ +   R     +      G SLSE++ +
Sbjct: 66  RKEVGLFSRQLATLLGAGIPLDKSLSSIVEQTENQNFRKVITGMQANITEGSSLSEAMKK 125

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P Q        +    +  G+    L  L+ +      +KAKVQ   +       
Sbjct: 126 HPDVFPSQ-----FPSLVAVGEKTGDYEATLTRLAELEEKSSELKAKVQVAMVYPFIMGS 180

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   + T+V                    + +  +  LIG   +
Sbjct: 181 LSIFVTIFLLTVVIPQIQELFLQFDAKLPLITRIVIGVSDFLIGFWWL 228


>gi|330941596|gb|EGH44379.1| type II secretion system protein [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 405

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/165 (10%), Positives = 49/165 (29%), Gaps = 6/165 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73
           D       +   ++AG+P+  +  +I   + +P        + +    G S + ++ +  
Sbjct: 67  DIAFFSRQMATMMKAGVPLLQSFDIISEGAENPNMRALVGSLKQEVSAGNSFATALRQKP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G L   L  ++      + +KAK++       A   + 
Sbjct: 127 E-----YFDDLFCNLVDAGEQAGALESLLDRVASYKEKTEKLKAKIKKAMTYPIAVLIVA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             +   +   V                   L+ +  + ++    +
Sbjct: 182 LIVSGILLIKVVPQFQSVFASFGAQLPTFTLMVIGLSDVVQKWWL 226



 Score = 38.6 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/128 (11%), Positives = 38/128 (29%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +  +  AG+P+ +A+  + G + + V            +   +S  +           
Sbjct: 277 RTLATTFAAGVPLVEALDSVAGATGNVVFK-----NAVIKVKQDVSTGMQLNFSMRSTGV 331

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
               +  ++   +  G L   L  ++    D  +         ME    A++   +   V
Sbjct: 332 FPSLAIQMTAIGEESGALDTMLDKVATYYEDEVDNMVDNLTSLMEPMIMAFLGVIVGGLV 391

Query: 141 STLVYFTS 148
             +     
Sbjct: 392 IAMYLPIF 399


>gi|332158910|ref|YP_004424189.1| hypothetical protein PNA2_1270 [Pyrococcus sp. NA2]
 gi|331034373|gb|AEC52185.1| hypothetical protein PNA2_1270 [Pyrococcus sp. NA2]
          Length = 355

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 70/183 (38%), Gaps = 3/183 (1%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K + ++R  +     P  L  +   + AG+ +++ +  +       +  EFR VI+  H 
Sbjct: 169 KSVWRRRVEEVERSLPYVLRHMASLLSAGIGLAETMVSVAKSDYGVISEEFRMVIQEMHK 228

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S  +++++    M    VS     I    + GGNLS+ L  ++        +K     
Sbjct: 229 GSSFEDALTKFEEKMKSDMVSRVVKQILRALKFGGNLSDILYKMADEFSFEYRIKLMDYV 288

Query: 122 LSM-EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA--AFMLIGIMV 178
             +         +  +   +  +V      ++  LI D  G  ++ +    A   I I +
Sbjct: 289 QKINGISFVYMFMTVVMPTLLIVVILAGSIFVKRLIVDVTGLAVIFLMGFPALSFIIITI 348

Query: 179 MRL 181
           ++ 
Sbjct: 349 IKR 351


>gi|307731501|ref|YP_003908725.1| general secretion pathway protein F [Burkholderia sp. CCGE1003]
 gi|307586036|gb|ADN59434.1| general secretion pathway protein F [Burkholderia sp. CCGE1003]
          Length = 405

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 60/184 (32%), Gaps = 12/184 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +   + +R              +   + AGLP+ +A+AV+  QS  D +R     +    
Sbjct: 59  LGRRLSQREQAI------LTRQLASLLIAGLPLDEALAVLTEQSERDYIRELMAAIRAEV 112

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G SL+ ++++  +     +       +    +  G L   L+ L+  +  R  +K K+
Sbjct: 113 LGGHSLANALAQHPK-----DFPEIYRALVAAGEHTGKLGLVLSRLADYIEQRNALKQKI 167

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
                       I   +   + + V                   ++ +A +  +      
Sbjct: 168 VLAFTYPTIVTIIAFGIVTFLLSYVVPQVVNVFASTKQQLPFLTIMMMALSGFVRNWWWA 227

Query: 180 RLMI 183
            L+ 
Sbjct: 228 VLIA 231



 Score = 35.5 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 36/130 (27%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       S+          I     G SLS ++     + P
Sbjct: 274 FASTLGILTAAGVPILRALQAAAETLSNTAMRGNIDDAIVRVREGTSLSRALGNTKTFPP 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G+++  L   +         +       +E      + G + 
Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAAEGEARELERRTMFLTSLLEPLLILAMGGVVL 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 VIVLAVMLPI 397


>gi|122879113|ref|YP_200224.6| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 401

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/173 (11%), Positives = 55/173 (31%), Gaps = 6/173 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            +       +   +++G+P+  ++ +I     +  ++    ++      G SL ESIS+ 
Sbjct: 61  KEIAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLYESISKH 120

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L  ++    + + +K K++           +
Sbjct: 121 PVQ-----FDELYRNLVRAGEGAGVLETVLETVATYKENIEALKGKIKKALFYPAMVVAV 175

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              +   +   V             +      L V A+  ++    + L++  
Sbjct: 176 AIIVSAILLIFVVPQFEEVFKSFGAELPAFTQLLVNASRFMVSYWWLMLIVTV 228



 Score = 38.6 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/137 (10%), Positives = 48/137 (35%), Gaps = 7/137 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISR 71
                        + +AG+P+ +A+ ++ G + + +  E   R+ +   +G  ++ ++ +
Sbjct: 264 NSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEEAVFRMRDDVSVGYPVNMAMKQ 323

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +  +  +         ++   +  G L   L  ++    +  N      +  +E     +
Sbjct: 324 VNLFPHM------VIQMTAIGEEAGALDAMLFKVAEYFEEEVNNAVDALSSLLEPLIMVF 377

Query: 132 IIGSLPFCVSTLVYFTS 148
           I   +   V  +     
Sbjct: 378 IGTIVGGMVIGMYLPIF 394


>gi|298485508|ref|ZP_07003591.1| Type 4 fimbrial assembly protein pilC [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159972|gb|EFI01010.1| Type 4 fimbrial assembly protein pilC [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 405

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/174 (11%), Positives = 54/174 (31%), Gaps = 7/174 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73
           D       +   ++AG+P+  +  +I   + +P        + +    G S + ++ +  
Sbjct: 67  DIAFFSRQMATMMKAGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRKKP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G L   L  ++      + +KAK++       A   + 
Sbjct: 127 E-----YFDDLFCNLVDAGEQAGALESLLDRVASYKEKTERLKAKIKKAMTYPTAVLIVA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
             +   +   V             +     L+ +A    ++    + ++  F V
Sbjct: 182 FIVSGILLIKVVPQFQSVFAGFNAELPAFTLMVIAL-SEVVQQWWLAIVALFPV 234



 Score = 38.6 bits (88), Expect = 0.47,   Method: Composition-based stats.
 Identities = 14/128 (10%), Positives = 37/128 (28%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +  +  AG+P+ +A+  + G + + V            +   +S  +           
Sbjct: 277 RTLATTFAAGVPLVEALDSVAGATGNVVFR-----NAVNQVKQDVSTGMQLNFSMRSTGV 331

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
               +  ++   +  G L   L  ++    +  +         ME    A +   +   V
Sbjct: 332 FPSLAIQMTAIGEESGALDAMLDKVATYYEEEVDNMVDNMTSLMEPMIMAILGVIVGGLV 391

Query: 141 STLVYFTS 148
             +     
Sbjct: 392 IAMYLPIF 399


>gi|113971812|ref|YP_735605.1| type II secretion system protein [Shewanella sp. MR-4]
 gi|113886496|gb|ABI40548.1| type II secretion system protein [Shewanella sp. MR-4]
          Length = 406

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 61/184 (33%), Gaps = 8/184 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           +  L K++    LD+       +    R+G+P+  A+A +   +    ++     + E  
Sbjct: 53  LAQLFKRKVG--LDELQIFTRQMYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQL 110

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G  LS ++++                +    +  G L +A   LS  +   +  + ++
Sbjct: 111 TAGRPLSSAMNQHPD-----VFDSLFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRI 165

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +A           I      ++ +V             D      + +  + + +    +
Sbjct: 166 KAAMRYPIFVLIAIALAMVILNIMVIPKFAEMFARFGADLPWATKVLIGTSNLFVNYWPL 225

Query: 180 RLMI 183
            L+I
Sbjct: 226 MLII 229



 Score = 39.3 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 9/135 (6%), Positives = 35/135 (25%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         + AG+P++ A++++     +    +    +        +    S +
Sbjct: 266 RSTLSRYCRSFSMMLSAGVPMTQALSLVADAVDNAYMHDKIVGMRR-----GIESGESML 320

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 +  +     +    +  G + + L + +       +   K     +E      +
Sbjct: 321 RVSNQSKLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGIV 380

Query: 133 IGSLPFCVSTLVYFT 147
              +      +    
Sbjct: 381 AVIVLVLALGIYLPM 395


>gi|91785779|ref|YP_560985.1| putative general secretory pathway protein F [Burkholderia
           xenovorans LB400]
 gi|91689733|gb|ABE32933.1| Putative general secretory pathway protein F [Burkholderia
           xenovorans LB400]
          Length = 405

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 60/183 (32%), Gaps = 12/183 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +   + +R              +   + AGLP+ +A++V+  QS  D +R     +    
Sbjct: 59  LGRRLSQREQAI------LTRQLASLLIAGLPLDEALSVLTEQSERDYIRELMASIRAEV 112

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G SL+ ++++  +     +       +    +  G L   L+ L+  +  R  +K K+
Sbjct: 113 LGGHSLANALTQHPK-----DFPEIYRALVAAGEHTGKLGLVLSRLADYIEQRNALKQKI 167

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
                       I   +   + + V                   ++ +A +  +      
Sbjct: 168 VLAFTYPAIVTLIAFGIVTFLLSYVVPQVVNVFASTKQQLPFLTIMMMALSGFVRNWWWA 227

Query: 180 RLM 182
            L+
Sbjct: 228 MLI 230



 Score = 38.6 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       S+    E     I     G SLS ++     + P
Sbjct: 274 FASTLGILTAAGVPILRALQAAAETLSNNAMRENIDDAIVRVREGTSLSRALGNTKTFPP 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G+++  L   +         +       +E      + G + 
Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAADGEARELERRTMFLTSLLEPLLILAMGGVVL 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 VIVLAVMLPI 397


>gi|85860074|ref|YP_462276.1| general secretion pathway protein F [Syntrophus aciditrophicus SB]
 gi|85723165|gb|ABC78108.1| general secretion pathway protein F [Syntrophus aciditrophicus SB]
          Length = 409

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 6/160 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
           +       +   + AG+P+  A+ ++V Q+ +  ++S   ++ +    G+SLS  +S   
Sbjct: 70  ELSVTTRHLATLLSAGMPLVQALNILVTQTDNQALQSILSQIRKDVVEGISLSAGMSSFP 129

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R       S F   +    +  G L   L  L+     ++    K++A            
Sbjct: 130 R-----VFSSFYISMVRAGEASGTLPVVLERLADYSEKQQEFARKIKAALAYPILMFLFG 184

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             + F + T V          +         L ++ +  L
Sbjct: 185 ALILFFLITFVIPNITEVFEEMNQSLPTITTLLISFSGFL 224



 Score = 34.3 bits (77), Expect = 8.3,   Method: Composition-based stats.
 Identities = 16/137 (11%), Positives = 43/137 (31%), Gaps = 7/137 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISR 71
                     +   ++ G+P+  A+ +    + + + +E           G  LS +++R
Sbjct: 272 EMAMARFASTLGTLLQNGVPLLTALEISRHIARNLLIAEAIENAGVEIKEGQGLSVALAR 331

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                        +T +    +  G L E L+ ++       +         +E      
Sbjct: 332 SGL------FPRMATEMIAIGEQSGRLEEMLSRIADSYEKETSAGLAFFMSLLEPLMILI 385

Query: 132 IIGSLPFCVSTLVYFTS 148
           +   + F V +++    
Sbjct: 386 MGLLVGFVVISVLLPIF 402


>gi|28899184|ref|NP_798789.1| putative tight adherence TadC-like transmembrane protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153836802|ref|ZP_01989469.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ3810]
 gi|260361577|ref|ZP_05774604.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus K5030]
 gi|260876734|ref|ZP_05889089.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AN-5034]
 gi|260898188|ref|ZP_05906684.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus Peru-466]
 gi|260900405|ref|ZP_05908800.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ4037]
 gi|28807408|dbj|BAC60673.1| putative tight adherence TadC-related transmembrane protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149749948|gb|EDM60693.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ3810]
 gi|308089100|gb|EFO38795.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus Peru-466]
 gi|308091488|gb|EFO41183.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AN-5034]
 gi|308109137|gb|EFO46677.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ4037]
 gi|308113997|gb|EFO51537.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus K5030]
 gi|328474278|gb|EGF45083.1| putative tight adherence TadC-like transmembrane protein [Vibrio
           parahaemolyticus 10329]
          Length = 313

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 68/157 (43%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++ ++ KR        P+ LD++V    +GL  + A+  +  +   S   +  E   V  
Sbjct: 153 LRRMVNKRQQAIRAGVPDMLDLLVVCTESGLGFNAALRRVADEIVISHPELADEVDTVCN 212

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G  + ES+  +V    L+E+    +++S  S++GG+L  +L   +   RD++   A
Sbjct: 213 KIQAGKPMPESLRELVVRTGLEELMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAA 272

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +  A  +  K    ++  +  C    +    P  +++
Sbjct: 273 EEIAAKIPVKMMFPMVIFIWPC--FFIVAIGPALISL 307


>gi|108763511|ref|YP_633923.1| type 4 fimbrial assembly protein PilC [Myxococcus xanthus DK 1622]
 gi|46560496|gb|AAT00616.1| type IV pilin [Myxococcus xanthus]
 gi|108467391|gb|ABF92576.1| type 4 fimbrial assembly protein PilC [Myxococcus xanthus DK 1622]
          Length = 417

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 49/161 (30%), Gaps = 6/161 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                   + AGLP+   + ++  Q  +P  +     +      G + ++++    +   
Sbjct: 83  FTRQFATMIDAGLPLVQCLDILASQMDNPSFKKVLFAIKSKVEQGSTFADALKEHPK--- 139

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    ++GG L   L  L+      + +K+KV++          +   + 
Sbjct: 140 --VFDELYVQLCAAGEVGGILDAILNRLAAYREKNEKLKSKVKSAMTYPIIVILVAIGVT 197

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             +   V            ++  G   + V  + M      
Sbjct: 198 AVLLLKVTPVFEKMFADFGSELPGPTQMIVNFSHMAQEYFF 238



 Score = 38.2 bits (87), Expect = 0.58,   Method: Composition-based stats.
 Identities = 11/130 (8%), Positives = 35/130 (26%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+P+ DA+ V    +      E   +     +    + +          
Sbjct: 286 FTRTLGTMISSGVPILDALDVTAKTA-GNRTVEDAIIYVRGKIAEGKNIAGPLA----ET 340

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +        +    +  G +   L  ++    D  +         +E     ++ G +  
Sbjct: 341 KVFPSMVVQMIGVGEATGAMDTMLNKIADFYDDEVDAAINSLTAMIEPVLMVFLGGVVGG 400

Query: 139 CVSTLVYFTS 148
            +  +     
Sbjct: 401 FLIGMYLPIF 410


>gi|209696320|ref|YP_002264251.1| general secretion pathway protein F [Aliivibrio salmonicida
           LFI1238]
 gi|208010274|emb|CAQ80606.1| general secretion pathway protein F [Aliivibrio salmonicida
           LFI1238]
          Length = 405

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 53/158 (33%), Gaps = 9/158 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
           +D       +   V+AG+P+ + +  +  Q     +RS    V      G  L+ES    
Sbjct: 66  NDLSLITRQLATLVQAGMPLEECLKAVAEQGEKPHIRSMMMGVRSKVIEGYPLAESFGGY 125

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G+L   L  L+    +R+ M++K+Q   +       +
Sbjct: 126 P-----HVFDDLFCSMVAAGEKSGHLDTVLNRLADYAENRQKMRSKLQQAMIYPI---ML 177

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
                  +S L+    P  ++  +   +G   +     
Sbjct: 178 TLIAVAVISFLLATVVPKIVDQFVQMGQGLPAVTEILI 215


>gi|325124302|gb|ADY83825.1| type 4 fimbrial assembly protein [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 408

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/193 (8%), Positives = 57/193 (29%), Gaps = 15/193 (7%)

Query: 1   MKHLIKKRTAKFL---------DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51
           ++++ +KR               D       +   ++AG+P+     ++     +P   E
Sbjct: 47  VRNIREKRKNILEGLFKKKVSTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMRE 106

Query: 52  FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
               +      G + + ++ +  ++            +    +  G L   L  ++    
Sbjct: 107 VVLGIKGEVEGGSTFASALRKYPQH-----FDNLFCSLVESGEQSGALETMLDRVAIYKE 161

Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             + +K K++           +   +   +   V        +    D      + V  +
Sbjct: 162 KSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMS 221

Query: 171 FMLIGIMVMRLMI 183
             +     + +++
Sbjct: 222 KWMQEYWFIMIIV 234



 Score = 38.9 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 38/128 (29%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +  +  AG+P+ DA+    G +++ +  E    I          +   R+    P   
Sbjct: 280 RTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVATGQQLQFAMRVSNRFP--- 336

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
               +  +    +  G L   L  ++    +  +         ME    A +   +   V
Sbjct: 337 --SMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLV 394

Query: 141 STLVYFTS 148
             +     
Sbjct: 395 IAMYLPIF 402


>gi|121999149|ref|YP_001003936.1| general secretion pathway protein F [Halorhodospira halophila SL1]
 gi|121590554|gb|ABM63134.1| general secretion pathway protein F [Halorhodospira halophila SL1]
          Length = 410

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 54/164 (32%), Gaps = 6/164 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66
           R      D       +   VR+GLP+ + +  +  Q+    ++S    V      G SL+
Sbjct: 65  RRGVRAGDLALVTRQMATLVRSGLPLEEVLRTVSRQTERKRLKSVLLAVRTRVTEGHSLA 124

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++       P    +  +       +  G+L   L  L+     R+ M+ KVQ      
Sbjct: 125 QALGDFPHIFPDIYRTSVAA-----GEQSGHLEVVLERLAEYAEKRQQMRQKVQLALFYP 179

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
                +   +   +   V        + +  D     +  +A +
Sbjct: 180 ILLTVMAILVTVALLGYVVPEVIQVFDNIGQDLPALTIGLIAVS 223


>gi|327538077|gb|EGF24767.1| type II secretion system protein [Rhodopirellula baltica WH47]
          Length = 297

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 85/177 (48%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R ++      + LD+++  +R+G   S A+A     ++ P+R +    +    LG S S 
Sbjct: 118 RLSRIERQLIDLLDMMIPMLRSGAGASAALAAASEVTASPLRDQIHWCVRRIQLGDSGSS 177

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
               + R MP+  +  FST +SV  + GG+L+  LA+++R+ RDR+ +  ++++   +++
Sbjct: 178 VFRELARRMPIDAMELFSTTMSVHWETGGSLAPVLASVARVARDRQEVARRIRSNIAQSQ 237

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            S   +  L + V+ +++   P  M    +   G   +        +GI+ M  +  
Sbjct: 238 FSTIAVLLLIYFVALVLWLDRPEVMKEFASSSLGSAAIAATIVLQAVGIVWMNAISR 294


>gi|319789966|ref|YP_004151599.1| Type II secretion system F domain protein [Thermovibrio
           ammonificans HB-1]
 gi|317114468|gb|ADU96958.1| Type II secretion system F domain protein [Thermovibrio
           ammonificans HB-1]
          Length = 404

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 57/189 (30%), Gaps = 21/189 (11%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
            D       +   + AG+P+  A+ +I  Q  +  +R     +      G   S +ISR 
Sbjct: 65  KDLLIFTRQLHAMIHAGIPLVQALRIIKEQLPNRRLRQIVEEIASFIEEGGKFSTAISRY 124

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +   ++  G L E L  L+  L   + ++ KV++          +
Sbjct: 125 RDIFGD-----LYISMVRAAEEAGTLEETLKRLADYLEKVEKLRGKVKSALFYPVFVFIV 179

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHM---------------LLGVAAAFMLIGIM 177
              +   +   V  T       +  +                     + +     +IG +
Sbjct: 180 AMLIVTGILVFVIPTFEQLYADMGGELPALTQMVIKVSNWVRDYAGWIVLFIVVFIIGFV 239

Query: 178 VMRLMINFD 186
            +R +  F 
Sbjct: 240 QLRRLEKFR 248



 Score = 38.2 bits (87), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 50/138 (36%), Gaps = 7/138 (5%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70
                 +    +   + +G+ + +A+++    +++  +R     V      G+SLS++++
Sbjct: 266 LKSSIASFARTLASMIASGINILNALSISAETANNEVIRKAIEDVRSQVEKGVSLSQALA 325

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +   + P+         +    +  GNL E L+ ++    +  +         +E     
Sbjct: 326 KHSIFPPM------LVNMVAIGEQAGNLDEMLSKVADFYEEEVDRTVDGLTSLIEPLMIV 379

Query: 131 WIIGSLPFCVSTLVYFTS 148
           +I   +   +  L     
Sbjct: 380 FIGSIIGVIIVALYLPIF 397


>gi|302189197|ref|ZP_07265870.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
           syringae 642]
          Length = 405

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/180 (10%), Positives = 50/180 (27%), Gaps = 18/180 (10%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73
           D       +   ++AG+P+  +  +I   + +P        + +    G S + ++ +  
Sbjct: 67  DIAFFSRQMATMMKAGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRQKP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G L   L  ++      + +KAK++       A   + 
Sbjct: 127 E-----YFDDLFCNLVDAGEQAGALESLLDRVASYKEKTERLKAKIKKAMTYPTAVLIVA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA------------AFMLIGIMVMRL 181
             +   +   V             +     L+ +A                 I   + + 
Sbjct: 182 FIVSGILLIKVVPQFQSVFAGFNAELPAFTLMVIALSEVVQQWWLAIVILFFISFFMFKR 241



 Score = 38.2 bits (87), Expect = 0.51,   Method: Composition-based stats.
 Identities = 14/128 (10%), Positives = 37/128 (28%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +  +  AG+P+ +A+  + G + + V            +   +S  +           
Sbjct: 277 RTLATTFAAGVPLVEALDSVAGATGNVVFR-----NAVNQVKQDVSTGMQLNFSMRSTGV 331

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
               +  ++   +  G L   L  ++    +  +         ME    A +   +   V
Sbjct: 332 FPSLAIQMTAIGEESGALDAMLDKVATYYEEEVDNMVDNMTSLMEPMIMAVLGVIVGGLV 391

Query: 141 STLVYFTS 148
             +     
Sbjct: 392 IAMYLPIF 399


>gi|88854702|ref|ZP_01129368.1| type IV pilus biogenesis protein PilC [marine actinobacterium
           PHSC20C1]
 gi|88815863|gb|EAR25719.1| type IV pilus biogenesis protein PilC [marine actinobacterium
           PHSC20C1]
          Length = 413

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/164 (12%), Positives = 55/164 (33%), Gaps = 9/164 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
           DD       +   + +GL +  A+ ++  Q+ +  +      + +    G +LS++ ++ 
Sbjct: 74  DDLAVMSRQMSTMISSGLSLIRALVILSEQTENKTLAKALGEIRQDVETGGTLSDAFAKH 133

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P          +    + GG L +AL +++        ++  +++          +
Sbjct: 134 GTVFPP-----IMIHLVRAGETGGFLDDALESIANNFEGEVKLRGTIKSALTYPVVVLIM 188

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
             +    +   +          L  +     LL     +M  G+
Sbjct: 189 AIAAVVGMLIFIVPVFEEMFADLGGE---LPLLTQVLVWMSTGM 229



 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 39/133 (29%), Gaps = 5/133 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
                   + AG+P+  A++++   S + V  E  R +       S+    S        
Sbjct: 282 FTRNFGTMLGAGVPILHALSIVGETSGNYVIEEALRRVAD-----SVRSGQSVSAPLARE 336

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                  T +    +  G++   L+ ++    D      +     +E      I   +  
Sbjct: 337 SVFPSMVTQMVAVGEDAGSMEVMLSKIADFYDDEVQKTTEQLTALIEPLMIGVIGAIVGV 396

Query: 139 CVSTLVYFTSPGY 151
            V  L       +
Sbjct: 397 MVIALYLPIFAIF 409


>gi|325108941|ref|YP_004270009.1| type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324969209|gb|ADY59987.1| Type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 310

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 68/158 (43%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           + ++I KR        P+ALD++V  V +GL +   +  +  + S     + +EF     
Sbjct: 149 LAYVISKRKQAIFLTMPDALDLLVVCVESGLGLDQGMNRVTAELSDTAPEICAEFSLCNF 208

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G +  E +  +     + ++   + ++    + G ++++AL   S  +R ++   A
Sbjct: 209 QLQMGRNRREVLHDLGVRTGVDDMKALAAILIQADRFGSSIAQALRVQSDSMRVKRMQIA 268

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A     +    ++  +   +  ++    P  ++++
Sbjct: 269 EEKAQKTAVQMIFPLVLFIFPGIFVVL--VGPAAISMM 304


>gi|114045980|ref|YP_736530.1| type II secretion system protein [Shewanella sp. MR-7]
 gi|113887422|gb|ABI41473.1| type II secretion system protein [Shewanella sp. MR-7]
          Length = 406

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/165 (11%), Positives = 52/165 (31%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
           D+       +    R+G+P+  A+A +   +    ++     + E    G  LS ++++ 
Sbjct: 64  DELQIFTRQMYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSAMNQH 123

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L +A   LS  +   +  + +++A           
Sbjct: 124 PD-----VFDSLFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRIKAAMRYPIFVLIA 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           I      ++ +V        +    D      + +  + + +   
Sbjct: 179 IALAMVILNIMVIPKFAEMFSRFGADLPWATKVLIGTSNLFVNYW 223



 Score = 40.1 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 9/132 (6%), Positives = 35/132 (26%), Gaps = 5/132 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                      + AG+P++ A++++     +    +    +        +    S +   
Sbjct: 269 LSRYCRSFSMMLSAGVPMTQALSLVADAVDNAYMHDKIVGMRR-----GIESGESMLRVS 323

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
              +  +     +    +  G + + L + +       +   K     +E      +   
Sbjct: 324 NQSKLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGIVAVI 383

Query: 136 LPFCVSTLVYFT 147
           +      +    
Sbjct: 384 VLVLALGIYLPM 395


>gi|157963576|ref|YP_001503610.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
 gi|157848576|gb|ABV89075.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
          Length = 406

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 55/171 (32%), Gaps = 6/171 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRM 72
           ++       +    R+G+P+  A+A +   +      E    + E    G  LS ++++ 
Sbjct: 64  EELQIFTRQMYSLTRSGIPILRAIAGLSETTHSVRMKEALDDISEQLTSGRPLSSAMNQH 123

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L +A   LS  +   +  + +++A           
Sbjct: 124 PD-----VFDALFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRIKAAMRYPIFVLIA 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           I      ++ +V        +    D      L +  + + +    + L++
Sbjct: 179 IAIAMVILNIMVIPKFAEMFSRFGADLPWATKLLINTSNVFVNYWPLMLLV 229



 Score = 40.1 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/132 (7%), Positives = 36/132 (27%), Gaps = 5/132 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                      + AG+P++ A++++     +    +    +        +    S +   
Sbjct: 269 LSRYCRSFSMMLSAGVPMTQALSLVADAVDNAYMHDSIVGMRR-----GIESGESMLRVS 323

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
              Q  +     +    +  G + + L + +       +   K     +E     ++   
Sbjct: 324 NNSQLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPLLIGFVACI 383

Query: 136 LPFCVSTLVYFT 147
           +      +    
Sbjct: 384 VLVLALGIYLPM 395


>gi|77761128|ref|YP_242147.2| fimbrial assembly protein [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|37784400|gb|AAP43032.1| PilC [Xanthomonas campestris pv. campestris]
          Length = 399

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 56/174 (32%), Gaps = 6/174 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   +++G+P+  ++ +I     +  ++    ++      G SL E+ISR
Sbjct: 59  SKDIAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLHEAISR 118

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    +  G L   L  ++    + + +K K++           
Sbjct: 119 HPVQ-----FDDLYRNLVRAGEGAGVLETVLDTVANYKENIEALKGKIKKALFYPAMVMA 173

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           +   +   +   V             +      + VAA+  ++    + L+ + 
Sbjct: 174 VAIIVSGILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWLMLLGSI 227



 Score = 37.4 bits (85), Expect = 0.85,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 48/131 (36%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77
                  + +AG+P+ +A++++ G + + V  E   R+ +   +G  ++ ++ ++  +  
Sbjct: 269 FARTTAVTFKAGVPLVEALSIVAGATGNKVYEEAVLRMRDDVSVGYPVNMAMKQVNLFPH 328

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         ++   +  G L   L  ++       N      +  +E     +I   + 
Sbjct: 329 M------VVQMTSIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIVG 382

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 383 GMVIGMYLPIF 393


>gi|21232530|ref|NP_638447.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|21114322|gb|AAM42371.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572717|gb|AAY48127.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 418

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 56/174 (32%), Gaps = 6/174 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   +++G+P+  ++ +I     +  ++    ++      G SL E+ISR
Sbjct: 78  SKDIAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLHEAISR 137

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    +  G L   L  ++    + + +K K++           
Sbjct: 138 HPVQ-----FDDLYRNLVRAGEGAGVLETVLDTVANYKENIEALKGKIKKALFYPAMVMA 192

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           +   +   +   V             +      + VAA+  ++    + L+ + 
Sbjct: 193 VAIIVSGILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWLMLLGSI 246



 Score = 37.4 bits (85), Expect = 0.85,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 48/131 (36%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77
                  + +AG+P+ +A++++ G + + V  E   R+ +   +G  ++ ++ ++  +  
Sbjct: 288 FARTTAVTFKAGVPLVEALSIVAGATGNKVYEEAVLRMRDDVSVGYPVNMAMKQVNLFPH 347

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         ++   +  G L   L  ++       N      +  +E     +I   + 
Sbjct: 348 M------VVQMTSIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIVG 401

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 402 GMVIGMYLPIF 412


>gi|18977364|ref|NP_578721.1| hypothetical protein PF0992 [Pyrococcus furiosus DSM 3638]
 gi|18893045|gb|AAL81116.1| hypothetical protein PF0992 [Pyrococcus furiosus DSM 3638]
          Length = 309

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 59/181 (32%), Gaps = 8/181 (4%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            I +R        P+A   +  S+RAG+  S+A+  +       +  EFRR +     G 
Sbjct: 90  RITRRIEDMEKALPDAFFYLAGSLRAGVSFSEALEELASAKFGALTLEFRRTVSEIKRGR 149

Query: 64  SLSESISRMV-RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
              E++     R      +   + +I    + G  +++ L  ++  +R+   ++ + +  
Sbjct: 150 PTVEALRAFALRNKRSPVIYRSTMIIIEALERGAPMADVLVAVANDVREIIRIQKERK-- 207

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
                            V   +          +I    G  +           ++ +  +
Sbjct: 208 -ASTGMQMMFFLVSSGFVGPFIVAVVSNIARGMIGSGMGLSIPVSELTL----VLWLFSI 262

Query: 183 I 183
           +
Sbjct: 263 V 263


>gi|293610129|ref|ZP_06692430.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827361|gb|EFF85725.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 408

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/193 (8%), Positives = 57/193 (29%), Gaps = 15/193 (7%)

Query: 1   MKHLIKKRTAKFL---------DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51
           ++++ +KR               D       +   ++AG+P+     ++     +P   E
Sbjct: 47  VRNIREKRKNILEGLFKKKVSTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMRE 106

Query: 52  FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
               +      G + + ++ +  ++            +    +  G L   L  ++    
Sbjct: 107 VVLGIKGEVEGGSTFASALRKYPQH-----FDNLFCSLVESGEQSGALETMLDRVAIYKE 161

Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             + +K K++           +   +   +   V        +    D      + V  +
Sbjct: 162 KSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMS 221

Query: 171 FMLIGIMVMRLMI 183
             +     + +++
Sbjct: 222 KWMQEYWFIMIIV 234



 Score = 38.9 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 38/128 (29%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +  +  AG+P+ DA+    G +++ +  E    I          +   R+    P   
Sbjct: 280 RTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVATGQQLQFAMRVSNRFP--- 336

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
               +  +    +  G L   L  ++    +  +         ME    A +   +   V
Sbjct: 337 --SMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLV 394

Query: 141 STLVYFTS 148
             +     
Sbjct: 395 IAMYLPIF 402


>gi|163751010|ref|ZP_02158242.1| MSHA biogenesis protein MshG [Shewanella benthica KT99]
 gi|161329300|gb|EDQ00298.1| MSHA biogenesis protein MshG [Shewanella benthica KT99]
          Length = 406

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/164 (10%), Positives = 49/164 (29%), Gaps = 6/164 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
           +       +    R+G+P+  A+A +   ++   +R     + E    G  LS +     
Sbjct: 65  ELQIFSRQMYSLTRSGIPILRAIAGLSETTNSQRMRDALDDISEQLTAGRPLSSA----- 119

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G L +A   L+  +   +  + +++A           I
Sbjct: 120 MNHHQDVFDALFVSMVHVGENTGKLEDAFMQLAGYIEREQETRRRIKAAMRYPTFVLIAI 179

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
                 ++ +V        +    +      L +  + + +   
Sbjct: 180 TIAMVILNIMVIPKFADMFSRFGAELPWATKLLIGTSSLFVNYW 223



 Score = 42.0 bits (97), Expect = 0.039,   Method: Composition-based stats.
 Identities = 11/132 (8%), Positives = 37/132 (28%), Gaps = 5/132 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                      + AG+P++ A++++     +    +    +        +    S +   
Sbjct: 269 LSRYCRSFSMMLSAGVPMTQALSLVADAVDNAYMHDRIVAMRR-----GIESGESMLRVS 323

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
              Q  +     +    +  G + + L + +       +   K     +E     ++ G 
Sbjct: 324 NHSQLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGFVAGI 383

Query: 136 LPFCVSTLVYFT 147
           +      +    
Sbjct: 384 VLILALGIYLPM 395


>gi|312136703|ref|YP_004004040.1| type ii secretion system f domain protein [Methanothermus fervidus
           DSM 2088]
 gi|311224422|gb|ADP77278.1| Type II secretion system F domain protein [Methanothermus fervidus
           DSM 2088]
          Length = 355

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 54/147 (36%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  +   + P AL  +   +RAGL   DA+  +       +  EF R +E    G S + 
Sbjct: 174 RADEISRELPYALRQMATELRAGLGFHDAMKSVATSGYGALSEEFARTLEEIKYGESTTR 233

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++  +   +P   +      I    + GG++++AL  ++  +     MK +  +  + + 
Sbjct: 234 ALMNLSVRVPSPGLKRAIQQIVRSLESGGDVAKALEIIAEDIAYELRMKFRDYSQKLNSF 293

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNV 154
              ++   +       +          
Sbjct: 294 MMIYMFIGIVGPAVLPILLIIATIFMP 320


>gi|295678177|ref|YP_003606701.1| general secretion pathway protein F [Burkholderia sp. CCGE1002]
 gi|295438020|gb|ADG17190.1| general secretion pathway protein F [Burkholderia sp. CCGE1002]
          Length = 405

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 60/188 (31%), Gaps = 12/188 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +   + +R              +   + AGLP+ +A++V+  QS  D +R     +    
Sbjct: 59  LGRRLSQREQAI------LTRQLASLLIAGLPLDEALSVLTEQSERDYIRELMAAIRAEV 112

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G SL+ ++ +  +     +       +    +  G L   L+ L+  +  R  +K K+
Sbjct: 113 LGGHSLANALQQHPK-----DFPEIYRALVAAGEHTGKLGLVLSRLADYIEQRNALKQKI 167

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
                       I   +   + + V                   ++ +A +  +      
Sbjct: 168 VLAFTYPTIVTIIAFGIVTFLLSYVVPQVVNVFASTKQQLPFLTIMMMALSGFVRHWWWA 227

Query: 180 RLMINFDV 187
            L+    V
Sbjct: 228 MLIGVIVV 235



 Score = 37.8 bits (86), Expect = 0.64,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       S+    E     I     G SLS ++     + P
Sbjct: 274 FASTLGILTAAGVPILRALQAAADTLSNNAMRENIDDAIVRVREGTSLSRALGNTKTFPP 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G+++  L   +         +       +E      + G + 
Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAADGEARELERRTMFLTSLLEPLLILAMGGVVL 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 VIVLAVMLPI 397


>gi|333025170|ref|ZP_08453234.1| putative integral membrane protein [Streptomyces sp. Tu6071]
 gi|332745022|gb|EGJ75463.1| putative integral membrane protein [Streptomyces sp. Tu6071]
          Length = 340

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/184 (10%), Positives = 66/184 (35%), Gaps = 2/184 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             ++   + ++      + +  ++   + +  A+      ++  +R     +++      
Sbjct: 115 REERTQMRRVEALATWTESLRDTIAGAVGLEQAIPASARAAAPALRPHLEALVDRLRART 174

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            L +++  +   +           + +     G  L + L  L++  R+  +M+ +V A 
Sbjct: 175 PLPDALQSLADEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQ 234

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
               + S  I+ ++       +   +  +++   N P G ++L        +G   +R +
Sbjct: 235 RAATRRSVQIVVAVSVLFVLGLAIFNKDFVSP-YNSPVGQVVLAGVCGLFALGFWWLRKL 293

Query: 183 INFD 186
              +
Sbjct: 294 STIE 297


>gi|171921006|gb|ACB59189.1| TadC [Actinobacillus suis ATCC 33415]
          Length = 281

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 70/154 (45%), Gaps = 4/154 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH--L 61
           ++K +  + ++D P  +D++  +V+ G+ +  A   +              ++       
Sbjct: 126 ILKSKIKRIMNDIPGFIDLVAVNVQTGISIEAAFKQVAIDFEHLNADLTYVILRIMRKAE 185

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
             SLS ++  M   +P +E+  F TV+      G +L E L  LS  +R+ + +  + + 
Sbjct: 186 LTSLSAALQDMAISLPTKEIRMFCTVMQQSLNFGSSLYEHLTQLSADIREMQLLVMEEKL 245

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            ++ AK S  +I  + F +  L+   +PG M VL
Sbjct: 246 GTLSAKMSIPLILFIMFPIIILI--VAPGAMRVL 277


>gi|254506677|ref|ZP_05118817.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus 16]
 gi|219550258|gb|EED27243.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus 16]
          Length = 314

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 73/157 (46%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + + + KR ++     P+ALD++V    +GL  S A+  +  +   S      E   V  
Sbjct: 154 LNYFVNKRQSRIRGGVPDALDLLVVCTESGLGFSAALRRVADELMISHPDFADELDTVCV 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ +S++   +V    ++E++   T++S  S++GG+LS+ L   +   RD++N + 
Sbjct: 214 KIKAGVEMSDAFDDLVERTGIKELAGLVTMLSHASRIGGSLSQTLREYTEDFRDKRNQEI 273

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +  A  +  K    ++  +  C    +    P  +++
Sbjct: 274 EEIAAKIPTKMIFPLLLFIWPC--FFIVAIGPSMLSI 308


>gi|297159256|gb|ADI08968.1| putative type II secretion system F protein [Streptomyces
           bingchenggensis BCW-1]
          Length = 303

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 60/167 (35%), Gaps = 3/167 (1%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                +   +RAG    +A+          +   +  V      G  ++E++ R  R   
Sbjct: 127 ELCGAVAGELRAGRQPVEALLA---TPPGHIGERWGLVSAAARFGGDVAEALRRAARSPG 183

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            + +   +    V    G  L+  L  ++  LR  ++ +  +++    A+A+A ++  LP
Sbjct: 184 AEGLIGVAACWQVAVDEGAGLAAGLDRVAAALRAERDQRQSLRSRLAGARATAVVLVLLP 243

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                +        ++VL++ P G   L V       G      +I 
Sbjct: 244 VLGLLMGTALGADPLHVLLHTPAGLACLLVGGLLEWAGFAWTSRVIR 290


>gi|302877472|ref|YP_003846036.1| Type II secretion system F domain [Gallionella capsiferriformans
           ES-2]
 gi|302580261|gb|ADL54272.1| Type II secretion system F domain [Gallionella capsiferriformans
           ES-2]
          Length = 408

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 59/170 (34%), Gaps = 6/170 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMV 73
           D       +   ++AG+P+  A+A +   + +   +   + V ++   G  LS ++ R  
Sbjct: 69  DLMLFSRQMYTLLKAGVPILRALAGLQESTKNTAFAAMLQDVRDSLDSGRELSAALRRHP 128

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           +       S F   +    ++ G L +    L   L   ++MK ++             +
Sbjct: 129 K-----VFSMFYISMVQVGEMTGMLDQTFIRLYAYLDFERDMKERIATALRYPSFVVIAM 183

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           G     ++  V  T          D      L +  +  ++    M +++
Sbjct: 184 GIAIVIINLFVIPTFAKVYAGFHADLPAITKLLLGFSAFMVSYWWMLMLM 233


>gi|330966320|gb|EGH66580.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 405

 Score = 69.8 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/180 (10%), Positives = 51/180 (28%), Gaps = 18/180 (10%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73
           D       +   ++AG+P+  +  +I   + +P        + +    G S + ++ +  
Sbjct: 67  DIAFFSRQMATMMKAGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRKKP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G L   L  ++      + +KAK++       A   + 
Sbjct: 127 E-----YFDDLFCNLVDAGEQAGALESLLDRVASYKEKTERLKAKIKKAMTYPTAVLIVA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA------------AFMLIGIMVMRL 181
             +   +   V             +     L+ +A             A   +   + + 
Sbjct: 182 FIVSGILLIKVVPQFQSVFAGFNAELPAFTLMVIALSEVVQQWWLAIVALFFVSFFMFKR 241



 Score = 38.6 bits (88), Expect = 0.46,   Method: Composition-based stats.
 Identities = 14/128 (10%), Positives = 37/128 (28%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +  +  AG+P+ +A+  + G + + V            +   +S  +           
Sbjct: 277 RTLATTFAAGVPLVEALDSVAGATGNVVFR-----NAVNQVKQDVSTGMQLNFSMRSTGV 331

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
               +  ++   +  G L   L  ++    +  +         ME    A +   +   V
Sbjct: 332 FPSLAIQMTAIGEESGALDAMLDKVATYYEEEVDNMVDNMTSLMEPMIMAILGVIVGGLV 391

Query: 141 STLVYFTS 148
             +     
Sbjct: 392 IAMYLPIF 399


>gi|326331490|ref|ZP_08197780.1| putative integral membrane protein [Nocardioidaceae bacterium
           Broad-1]
 gi|325950746|gb|EGD42796.1| putative integral membrane protein [Nocardioidaceae bacterium
           Broad-1]
          Length = 238

 Score = 69.8 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 63/172 (36%), Gaps = 3/172 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +        +   +  G+ +  A+   +  +  P+ +E  R+        S  +++    
Sbjct: 56  EALEEWTRSLSGVLTVGVGLEQALIATLRSTPAPIVAEVNRLAARLRARWSTEDALRAFA 115

Query: 74  RYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +        +  + +   + G  L+  L  L+  +      + +V+A   + +A+A  
Sbjct: 116 DELNDATGDLVAANLILGARRRGAGLAAVLEGLAESVAADVRARRQVEADRAKPRATARW 175

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +  +   V  ++  +   Y++     P G ++L       +  ++ M+ M N
Sbjct: 176 VTIISAVVIVVLAVSG-TYVDP-YATPLGQVILATLLGAYVGILVWMKRMAN 225


>gi|229816771|ref|ZP_04447053.1| hypothetical protein BIFANG_02018 [Bifidobacterium angulatum DSM
           20098]
 gi|229785787|gb|EEP21901.1| hypothetical protein BIFANG_02018 [Bifidobacterium angulatum DSM
           20098]
          Length = 448

 Score = 69.8 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/164 (12%), Positives = 56/164 (34%), Gaps = 5/164 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            +  I+    +G    +A      +          R+   +   +    +      +   
Sbjct: 54  VIAAIIARTASGGSALEAF----QEQFGARF-ATSRITTERIAMILRRHASDDDTEHDIT 108

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +     ++  ++  +LG  +   L ++S   R     +   +      +A+  ++ +LP 
Sbjct: 109 RIAGHLASACALSERLGCEVHRCLQSVSDSYRRECKARDLRKEAFAAPQATIRLMSALPL 168

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
               L  F     +  L + P G   L   + + ++G++ +R +
Sbjct: 169 ATVALGEFMGAHPITFLFSSPTGLACLVAGSVWYVLGLLWIRRL 212


>gi|50083623|ref|YP_045133.1| type 4 fimbrial assembly protein [Acinetobacter sp. ADP1]
 gi|49529599|emb|CAG67311.1| type 4 fimbrial assembly protein [Acinetobacter sp. ADP1]
          Length = 408

 Score = 69.8 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/193 (10%), Positives = 58/193 (30%), Gaps = 15/193 (7%)

Query: 1   MKHLIKKRTAKFL---------DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRS 50
           ++ + +KR   F           D       +   ++AG+P+  A  ++     +P +R 
Sbjct: 47  IRTIREKRKNIFEGLLKKKVKPLDIAIFTRQLATMMKAGVPLVQAFEIVAEGLENPAMRD 106

Query: 51  EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
               +      G + + ++ +  +             +    +  G+L   L  ++    
Sbjct: 107 VVLGLKNEVEGGNTFAGALRKYPQ-----YFDNLFCSLIESGEQSGSLEIMLDRVAVYKE 161

Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             + +K K++           +   +   +   V             D      L V  +
Sbjct: 162 KSEVLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFKDLFTSFGADLPAFTQLVVNMS 221

Query: 171 FMLIGIMVMRLMI 183
             +     + +++
Sbjct: 222 NWMQDYWFILILV 234



 Score = 37.8 bits (86), Expect = 0.69,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 46/163 (28%), Gaps = 24/163 (14%)

Query: 5   IKKRTAKFLDDFPNAL-------------------DIIVRSVRAGLPVSDAVAVIVGQSS 45
            +KR+ +F D     +                     +  +  AG+P+ DA+A   G ++
Sbjct: 245 ARKRSKRFRDQLDRLVLRLPIVGDLVYKAIIARYSRTLATTFAAGVPLIDALASTAGATN 304

Query: 46  DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANL 105
           + V  +    I              R+    P       +  +    +  G L E L  +
Sbjct: 305 NTVYEQAVLKIREDVSTGQQLNFAMRVSNRFP-----TMAIQMVAIGEESGALDEMLDKV 359

Query: 106 SRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
           +       +         ME    A +   +   V  +     
Sbjct: 360 ANYYESEVDHAVDGLTSMMEPLIMAILGILVGGLVIAMYLPIF 402


>gi|212633385|ref|YP_002309910.1| type II secretion system protein [Shewanella piezotolerans WP3]
 gi|212554869|gb|ACJ27323.1| Type II secretion system protein [Shewanella piezotolerans WP3]
          Length = 406

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/165 (12%), Positives = 52/165 (31%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
           D+       +    R+G+P+  A+A +   +    ++     + E    G  LS ++++ 
Sbjct: 64  DELQIFTRQMYSLTRSGIPILRAIAGLSETTHSQRMKDALNDISEQLTSGRPLSSAMNQH 123

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L +A   LS  +   +  + +++A           
Sbjct: 124 PD-----VFDALFVSMIHVGENTGKLEDAFIQLSGYIEREQETRRRIKAAMRYPIFVLIA 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           I      ++ +V        +    D      L +  + + +   
Sbjct: 179 IAIAMVILNIMVIPKFAEMFSRFGADLPWATKLLINTSSVFVNYW 223



 Score = 42.0 bits (97), Expect = 0.042,   Method: Composition-based stats.
 Identities = 10/132 (7%), Positives = 37/132 (28%), Gaps = 5/132 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                      + AG+P++ A++++     +    +    +        +    S +  +
Sbjct: 269 LSRYCRSFSMMLSAGVPMTQALSLVADAVDNAYMHDSIVAMRR-----GIESGDSMLRVH 323

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
              Q  +     +    +  G + + L + +       +   K     +E     ++   
Sbjct: 324 NSSQLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGFVACI 383

Query: 136 LPFCVSTLVYFT 147
           +      +    
Sbjct: 384 VLVLALGIYLPM 395


>gi|300390208|gb|ADK10911.1| PilG [Thermoanaerobacterium saccharolyticum]
          Length = 404

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 59/180 (32%), Gaps = 11/180 (6%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSE 67
               + D           + AG+P+  ++A +  Q  +  ++     V E    G +LSE
Sbjct: 59  RKVKVKDIAVFCRQFSVLINAGIPIVASLATLSEQLENKRLKKALNEVYEDVQKGKTLSE 118

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           S+ +     P+         +    ++ G L + L  ++       N+  K+++      
Sbjct: 119 SMRKHPDAFPM-----LLFNMIEAGEVSGTLDKVLNEMAEHFEKENNLNQKIKSALAYPA 173

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML--LGVAAAFMLIGIMVMRLMINF 185
               +       V  LV    P ++ +  N      +  L +      I       + NF
Sbjct: 174 ---IVSIVAVLVVIFLVTNVLPTFVGMFKNAGAQLPMPTLILLGLSDSIAHYWYIYLGNF 230



 Score = 35.5 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/133 (8%), Positives = 38/133 (28%), Gaps = 5/133 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+P+ +++ ++V +               + +      ++        +
Sbjct: 272 FTRTLSTLIGSGIPLMESL-LVVEKVVGNTVVANGLKKAEEEIKRGNGLALP----LKKI 326

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G+L   L   +       +         +E     ++   + F
Sbjct: 327 DIFPPMVIQMIKVGEDSGSLDSILKKTADFYDSEVDTAVSQMTTLIEPLIIVFLASIVGF 386

Query: 139 CVSTLVYFTSPGY 151
            V ++V      Y
Sbjct: 387 IVVSIVMPMFQMY 399


>gi|299067812|emb|CBJ39023.1| Tad secretion system, secretion accessory protein [Ralstonia
           solanacearum CMR15]
          Length = 315

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 74/164 (45%), Gaps = 3/164 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   IK R  +  + FP++LD+I+  V AGL +  A+  +V +       +  E+  +  
Sbjct: 151 LSLKIKYRQREIFESFPDSLDLIMVCVEAGLSLDAAILRVVDEMRTARPVMAEEYELLTL 210

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL   +++  +     + +VS    ++    + G +++++L   S +LR +++M A
Sbjct: 211 ELRAGLPREKALRNLAARTGVDDVSMLVAMLIQADRFGTSVADSLRVHSDMLRTKRHMLA 270

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           + +A  +  K    +I  +   +  ++   +   M   +  P G
Sbjct: 271 EERAAKIGTKVLFPLIFCIFPSLYVVLLGPAALQMIAALGAPGG 314


>gi|46198748|ref|YP_004415.1| pili assembly protein pilC [Thermus thermophilus HB27]
 gi|17226361|gb|AAL37752.1|AF436068_1 competence protein PilC [Thermus thermophilus HB27]
 gi|46196371|gb|AAS80788.1| pili assembly protein pilC [Thermus thermophilus HB27]
          Length = 441

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 49/157 (31%), Gaps = 5/157 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            D       +   + AGL +  A+A++  Q+ +    E  + +        +   ++   
Sbjct: 100 KDLAIFSRQLATMLGAGLTLLQALAILERQTENRKFREILKQVR-----TDVEGGMAFSE 154

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +  S     +    +  G L   L  L+  L     ++ K+++            
Sbjct: 155 ALSKHKIFSRLYVNLVRAGETSGGLDLILDRLASFLEKELELRGKIRSAMTYPVIVFVFA 214

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             + + + T +       +  L ++        +A +
Sbjct: 215 VGVAYFLLTGIVPQFAQILTDLGSELPLLTRFLIAVS 251



 Score = 38.9 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 10/130 (7%), Positives = 37/130 (28%), Gaps = 4/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+ + +A+ +  G + + V  E     + +            +      
Sbjct: 307 FSRTLALLLSSGVNIVEALDITKGTAGNSVVEEIVEAAKLKIQQGDP----LNLTLAQHP 362

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                  + +    +  G L   L+ ++       +        ++E     ++   +  
Sbjct: 363 FVFPPMVSSMVAIGEETGALDTMLSKVADFYEREVDEAVASLTAAIEPLMIIFLGVIVGM 422

Query: 139 CVSTLVYFTS 148
            V+ +     
Sbjct: 423 IVAGMFLPLF 432


>gi|153003600|ref|YP_001377925.1| general secretion pathway protein F [Anaeromyxobacter sp. Fw109-5]
 gi|152027173|gb|ABS24941.1| general secretion pathway protein F [Anaeromyxobacter sp. Fw109-5]
          Length = 409

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 55/166 (33%), Gaps = 6/166 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D   A   +     AG+P+ +A+  +V Q   + ++     V +  + G +L+++++  
Sbjct: 69  RDLAVATRQLAVLAHAGIPLVEALTALVDQVEHERLKRVLGDVKQRVNEGSALADALAAH 128

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R       S     +    +  G L   L  L+     +  +++K+        A   I
Sbjct: 129 PR-----VFSTLYVNMIRAGESSGALEIVLVRLADFTESQARLRSKIAGTMAYPIAMMVI 183

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
              +   + T+V        +        +  + +  +        
Sbjct: 184 GTLIMGILFTVVIPKITQIFDNTNATLPWYTAVTIGISSFAARWWW 229


>gi|83746394|ref|ZP_00943446.1| GspF [Ralstonia solanacearum UW551]
 gi|207722786|ref|YP_002253221.1| general secretory pathway protein f [Ralstonia solanacearum MolK2]
 gi|207744655|ref|YP_002261047.1| general secretory pathway protein f [Ralstonia solanacearum
           IPO1609]
 gi|83726935|gb|EAP74061.1| GspF [Ralstonia solanacearum UW551]
 gi|206587970|emb|CAQ18551.1| general secretory pathway protein f [Ralstonia solanacearum MolK2]
 gi|206596062|emb|CAQ62989.1| general secretory pathway protein f [Ralstonia solanacearum
           IPO1609]
          Length = 403

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 60/178 (33%), Gaps = 8/178 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65
           KR +   +        +   + AGLP+ +A+A +  Q+    V      +      G SL
Sbjct: 59  KRLSPQENAL--VTRQLASLLVAGLPLDEALAALADQAERAYVHELLASIRAEVVGGSSL 116

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S ++++  R     +       +    +  GNL   L+ L+  +  R  + +K++     
Sbjct: 117 SVALAQHPR-----DFPDIYRALVSAGEHSGNLGLVLSRLADYIESRNALTSKIKLAFTY 171

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
                 +  ++   + + V                   ++ +  +  +     +  ++
Sbjct: 172 PAIVTVVAFAIVIFLLSYVVPQVVSVFANTKQKLPTLTIIMLWLSDFVRNWGWLAAIV 229


>gi|108761173|ref|YP_630731.1| general secretion pathway protein F [Myxococcus xanthus DK 1622]
 gi|108465053|gb|ABF90238.1| general secretion pathway protein F [Myxococcus xanthus DK 1622]
          Length = 418

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/180 (11%), Positives = 61/180 (33%), Gaps = 8/180 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           ++ L + R     DD       +   + AG+ + ++++ +V Q   +  +     + +  
Sbjct: 68  LRKLGRGRVN--TDDVAIFTRQLSTLLGAGVTLVESLSALVDQVEKERFKRALSDIKQRV 125

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           + G SL+E++ +  +  P          +    +  G L   L  L+    ++  ++ K+
Sbjct: 126 NEGSSLAEAMGQHPKIFP-----SIYVNMVRAGEASGALDAVLTRLADFTENQARLQQKI 180

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            +  +       + G +   +   V          +           +A++        +
Sbjct: 181 LSTMLYPAIMMVVGGGILVALMVFVVPKVTKIFETMKATLPLSTRFLIASSNFFQSWWFI 240


>gi|83312845|ref|YP_423109.1| Flp pilus assembly protein TadC [Magnetospirillum magneticum AMB-1]
 gi|82947686|dbj|BAE52550.1| Flp pilus assembly protein TadC [Magnetospirillum magneticum AMB-1]
          Length = 339

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 61/147 (41%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + + ++KR       FP+ALD+IV  V AGL V  A+  +  +    +  +  E      
Sbjct: 180 LTNAVQKRQMALSRAFPDALDLIVICVDAGLSVETALGRVTEEMMISAPEMAEEIGLTAA 239

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +         L +V   +T +    + G  +++AL  +S+  R+ +   A
Sbjct: 240 ELAFLADRRHAWENFAERTGLPQVKSLATALIQSEKYGTPVAQALKVISQENREGRMAAA 299

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +A ++ AK +  +I      +  ++
Sbjct: 300 EKKAAALPAKLTVPMIVFFLPVLFLII 326


>gi|300690059|ref|YP_003751054.1| general Secretory Pathway protein F, type II secretion system
           [Ralstonia solanacearum PSI07]
 gi|299077119|emb|CBJ49743.1| General Secretory Pathway protein F, type II secretion system
           [Ralstonia solanacearum PSI07]
          Length = 403

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 64/181 (35%), Gaps = 14/181 (7%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65
           KR +   +        +   + AGLP+ +A+A +  Q+    V      +      G SL
Sbjct: 59  KRLSPQENAL--VTRQLASLLVAGLPLDEALAALADQAERAYVHELLASIRAEVVGGSSL 116

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S ++S+  R     +       +    +  GNL   L+ L+  +  R  + +K++     
Sbjct: 117 SVALSQHPR-----DFPDIYRALVSAGEHSGNLGLVLSRLADYIESRNALTSKIKLAFTY 171

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF---MLIGIMVMRLM 182
                 +       V  L+ +  P  ++V  N  +    L +   +    +     +  +
Sbjct: 172 PA---IVTVVAFAIVIFLLSYVVPQVVSVFANTKQKLPTLTIVMLWLSDFVRNWGWLAAI 228

Query: 183 I 183
           +
Sbjct: 229 V 229


>gi|33152381|ref|NP_873734.1| tight adherence protein C [Haemophilus ducreyi 35000HP]
 gi|33148604|gb|AAP96123.1| tight adherence protein C [Haemophilus ducreyi 35000HP]
          Length = 290

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 75/158 (47%), Gaps = 6/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           +  +IK +  + + D P  +D++  +V+ G+ +  A   +     + +  +     R+I 
Sbjct: 132 VNMIIKSKIKRIMSDLPGFIDLVAVNVQTGISIEAAFKQVSMDFERLNPDLTYVLLRIIR 191

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              L  SL+ ++  +   +P +E+  F TV+      G ++ + L  LS  +RD + +  
Sbjct: 192 RAEL-TSLNVALQDLAISLPTKEIRMFCTVMQQSLNFGSSVYDNLTMLSADIRDMQLLVM 250

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +  ++ AK S  +I  + F +  L+   +PG M VL
Sbjct: 251 EEKLGTLAAKMSVPLILFVMFPIIILI--VAPGAMRVL 286


>gi|323491540|ref|ZP_08096719.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546]
 gi|323314116|gb|EGA67201.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546]
          Length = 313

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 76/165 (46%), Gaps = 7/165 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +  ++ KR +K     P+ALD++V    +GL  + A+  +  +   S      E   V  
Sbjct: 153 LGFMVDKRQSKIRGGIPDALDLLVVCTESGLGFNAALRRVADELTISHPEFADELDTVCV 212

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
             + G+ +S++ + +++   L+E++   T+++  S++GG+LS+ L   +   RD++N + 
Sbjct: 213 KVNAGVEMSDAFNDLIQRTGLKEIAGLVTMLAHASKIGGSLSQTLREYTEDYRDKRNQEI 272

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162
           +  A  +  K    ++  +  C    +    P  +  L     G 
Sbjct: 273 EEVAAKIPTKMIFPLLIFIWPC--FFIVAIGPSML--LFTATMGK 313


>gi|304392379|ref|ZP_07374320.1| type II secretion system protein [Ahrensia sp. R2A130]
 gi|303295483|gb|EFL89842.1| type II secretion system protein [Ahrensia sp. R2A130]
          Length = 328

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 59/158 (37%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +K  +K R       +P+ALD+ +  V +G+ +  A   +  +    S P+  E      
Sbjct: 169 VKQKMKARQLSISQSWPDALDLSLICVESGMSIEVAFRKVASEIGAQSPPLAEELMITTA 228

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +V    L+ V      +    + G  LS AL  LS+  RD +   A
Sbjct: 229 ELSFLQERKHAYDNLVYRTGLESVKNVVLSLVQSEKYGTPLSVALRVLSQENRDTRMAMA 288

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A  +  K +  ++      +  ++    P  +  +
Sbjct: 289 EKKAAGLGPKLTVPMMICFLPVLFCVI--LGPAVIRTM 324


>gi|296120678|ref|YP_003628456.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
 gi|296013018|gb|ADG66257.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
          Length = 419

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 58/181 (32%), Gaps = 14/181 (7%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                    +     AGLP+  ++ ++ V      +++    VIE    G +LSE++ + 
Sbjct: 80  KQLCTFTRQLSTLQDAGLPILRSLRILEVQAKPGALKNSLMGVIEDIESGSTLSEAMGKQ 139

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +             +    + GG L   L  L+     ++++K KVQ   +   A   +
Sbjct: 140 PKA-----FDNLYVNMVRAGEAGGALEVILQRLAEFKERQQSLKRKVQGAMIYPAAVITV 194

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV--------MRLMIN 184
              +   +   +        +           + +  +  ++            + L+I 
Sbjct: 195 ATLIVGFIMYWIIPKFKKIFDDFGTKLPMMTEVLIGTSSAVVNYWYLGPVIPISIWLLIK 254

Query: 185 F 185
            
Sbjct: 255 I 255



 Score = 37.4 bits (85), Expect = 0.96,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 41/129 (31%), Gaps = 7/129 (5%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMPL 78
              +   V +G+P+ +A+++    + + V    F  V      G S++  +         
Sbjct: 289 CRTLGTLVASGVPILEALSITRDTAGNAVFVKAFEHVNAAIREGESMAVPLRE------T 342

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +        +    +  G L   L  ++ +  +   +  +     +E      +   + F
Sbjct: 343 KIYDEIVVNMVDVGEETGALDNMLYKVADVYDEEVGVLVEGLINMLEPLMVVVLGLIVGF 402

Query: 139 CVSTLVYFT 147
            V  L    
Sbjct: 403 IVIALFMPL 411


>gi|311105395|ref|YP_003978248.1| type II secretion system protein F domain-containing protein 2
           [Achromobacter xylosoxidans A8]
 gi|310760084|gb|ADP15533.1| bacterial type II secretion system protein F domain protein 2
           [Achromobacter xylosoxidans A8]
          Length = 290

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 1/147 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           ++ L  KR      D P   D++   V AGL V  A+ +         +R      +   
Sbjct: 133 LRSLSVKRRRSIERDLPFVFDMMTLCVEAGLSVHGALQMAAQSGPAGILRDALADALAEM 192

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G+S + +I  +           ++  ++    LG +L   L   +   R  ++++A+ 
Sbjct: 193 RAGVSRTAAIKALAERSNSPLARNWAAALAQAEALGISLGPVLRAQAAQSRSDRHVRAEQ 252

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146
            A+    K    +IG +  C   ++ F
Sbjct: 253 LAMQAPVKMLLPLIGCIFPCTFIVLAF 279


>gi|157375501|ref|YP_001474101.1| putative putative tight adherence TadC-like transmembrane protein
           [Shewanella sediminis HAW-EB3]
 gi|157317875|gb|ABV36973.1| conserved hypothetical putative tight adherence TadC-related
           transmembrane protein [Shewanella sediminis HAW-EB3]
          Length = 321

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 69/158 (43%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++ +  +R       FP+ALD++V    AGL +  A+  +  +   S   + SE   V  
Sbjct: 159 LQKIASRRMRMLRTGFPDALDLLVVCCEAGLGLMAAMQRVARELALSHPTLASELDLVCS 218

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL++  +++       L+++   ++ IS   +LG  ++E L   S   R+++  +A
Sbjct: 219 KVRAGLTVKVALNEFTDRTGLEDIKGLNSAISQSIRLGTGIAETLRVFSDEYRNKRLQEA 278

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + QA  +  K    ++  +       +    P  + V+
Sbjct: 279 EEQAAKLAVKMIFPMMLCIWPS--FFIVAIGPAVLKVM 314


>gi|217969595|ref|YP_002354829.1| type II secretion system protein [Thauera sp. MZ1T]
 gi|217506922|gb|ACK53933.1| type II secretion system protein [Thauera sp. MZ1T]
          Length = 409

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/179 (10%), Positives = 56/179 (31%), Gaps = 7/179 (3%)

Query: 1   MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIET 58
           ++     R  +    D       +   +++G+P+  A  + +    +  +      +   
Sbjct: 56  IRKQKMARGGRISEKDIALFTRQLATMMKSGVPLLQAFDIAMKGSGNAALVRLLNDIRTD 115

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G +LS++ ++   +            +    +  G L   L  ++        +K+K
Sbjct: 116 VETGSNLSQAFAKHPAH-----FDRLFCNLVAAGEQAGILDGLLDRIATYKEKILAIKSK 170

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +++      A   + G +   +   V        +    +     L+ +A +   +   
Sbjct: 171 IKSALFYPAAVVVVAGLVISVMMLFVIPEFKSVFSSFGAELPVPTLMVIAISDAFVAYW 229



 Score = 37.4 bits (85), Expect = 0.99,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 39/130 (30%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+ +A+  + G S + V      V+ T  +   +S   S  V     
Sbjct: 279 WTRTLSTMFAAGVPLVEALDSVGGASGNHVY-----VVATHQIQSEVSTGTSLTVAMQNA 333

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +        +    +  G L   L  ++       +      +  +E     ++   +  
Sbjct: 334 EVFPTMVVQMVSIGEESGQLDAMLGKVADFFEQEVDDAVAGLSQLLEPLIMVFLGTIIGG 393

Query: 139 CVSTLVYFTS 148
            V  +     
Sbjct: 394 LVVAMYLPIF 403


>gi|251789651|ref|YP_003004372.1| type II secretion system protein [Dickeya zeae Ech1591]
 gi|247538272|gb|ACT06893.1| type II secretion system protein [Dickeya zeae Ech1591]
          Length = 318

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +K     R  K     P+ALD++V    AGL +   + V+  +   SS  +  E R    
Sbjct: 158 LKMRAAGRGEKLARAVPDALDLMVVCAEAGLSIGRVLQVVSKELGLSSPEMADELRYTAA 217

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +    + ++  +     + E+      +    + G  LS+AL  ++   R    +  
Sbjct: 218 ELQILADRNTALQHLAERTRVSEIESMVATLLQAERYGTPLSQALRTIADESRKTLLLTL 277

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +A  + A+ S  ++  +   +  ++
Sbjct: 278 EEKAGKLPAQLSVPLMALILPPIIAIM 304


>gi|251791986|ref|YP_003006706.1| TadC [Aggregatibacter aphrophilus NJ8700]
 gi|247533373|gb|ACS96619.1| TadC [Aggregatibacter aphrophilus NJ8700]
          Length = 288

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 72/158 (45%), Gaps = 6/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           +  ++K +  K ++D    +D++  +V+ G+ +  A+  +       +  +     R+I 
Sbjct: 130 VNSILKSKIKKIMNDLAGFIDLVAVNVQTGVSIEAALKQVATDFKTLNPDLTYVMLRIIR 189

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +   +S+++  +   +P  E+  F TV+      G ++   L  LS  +R+ + +  
Sbjct: 190 KSEI-TGMSQALQDLSISLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSSDIRELQLLTI 248

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +  ++ AK S  +I  + F +  L+   +PG M V 
Sbjct: 249 EEKLGTLAAKMSIPLILFIMFPIIILI--LAPGVMRVF 284


>gi|258405228|ref|YP_003197970.1| Type II secretion system F domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257797455|gb|ACV68392.1| Type II secretion system F domain protein [Desulfohalobium
           retbaense DSM 5692]
          Length = 401

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 64/174 (36%), Gaps = 8/174 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
             D           + +G+P+  A+ V+  Q+ +  +R +   V      G SL E++ +
Sbjct: 60  DRDMVIFSRQFATMIDSGVPILQALQVMCEQTENDKLRRKLYEVRNDIEGGSSLYEALRK 119

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                         T +    + GG L   L  L+  +    N+K+KV+A  +     ++
Sbjct: 120 HPD-----VFDDLYTNMVNAGETGGVLDVILDRLATYIEKAANLKSKVRAALIYPGVVSF 174

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG--IMVMRLMI 183
           +  ++   +   V  T     N   +       L +  +  + G  + ++  ++
Sbjct: 175 VAVAVIAIILIFVIPTFEQLFNDFGSGLPTPTKLVIGLSRWVKGNLLWLILGLV 228



 Score = 38.6 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/130 (10%), Positives = 37/130 (28%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
                   V +G+P+  A+ ++   S + +               S++E  +        
Sbjct: 269 FSRTFSTMVSSGVPILQALDIVARTSGNKIVESGV-----NEARTSIAEGQTLADPLDAT 323

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G+L   L  ++    D  ++        +E     ++   +  
Sbjct: 324 GVFPPMVIHMISIGETTGSLDTMLGKIADFYDDEVDVAVTTLTSLIEPILIVFLGVIVGG 383

Query: 139 CVSTLVYFTS 148
            V ++     
Sbjct: 384 LVVSMYLPIF 393


>gi|21326712|gb|AAL92472.1| TadC [Haemophilus ducreyi]
          Length = 281

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 75/158 (47%), Gaps = 6/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           +  +IK +  + + D P  +D++  +V+ G+ +  A   +     + +  +     R+I 
Sbjct: 123 VNMIIKSKIKRIMSDLPGFIDLVAVNVQTGISIEAAFKQVSMDFERLNPDLTYVLLRIIR 182

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              L  SL+ ++  +   +P +E+  F TV+      G ++ + L  LS  +RD + +  
Sbjct: 183 RAEL-TSLNVALQDLAISLPTKEIRMFCTVMQQSLNFGSSVYDNLTMLSADIRDMQLLVM 241

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +  ++ AK S  +I  + F +  L+   +PG M VL
Sbjct: 242 EEKLGTLAAKMSVPLILFVMFPIIILI--VAPGAMRVL 277


>gi|84494453|ref|ZP_00993572.1| hypothetical protein JNB_06644 [Janibacter sp. HTCC2649]
 gi|84383946|gb|EAP99826.1| hypothetical protein JNB_06644 [Janibacter sp. HTCC2649]
          Length = 310

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 60/151 (39%), Gaps = 2/151 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     +R  + L +FP   +++  +V AG     A+  +   S   +  E RR +    
Sbjct: 155 LSRRANQREERMLAEFPTVAELLALAVGAGEGAVGALERVCRLSRGELSDELRRCLGDAR 214

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL  ++  +     L  ++ F   I +  + G  L++ L   ++ +R+    +  + 
Sbjct: 215 AGASLPVALHGLADRTGLMSLTRFVDGIVIAVERGTPLADVLRAQAQDVREEG--RRAIM 272

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
               + + +  I         T+++   PG+
Sbjct: 273 EAGGKKEIAMMIPVVFLVLPITVLFAIFPGF 303


>gi|313291990|gb|ADR51188.1| general secretion pathway protein F [Aeromonas veronii]
          Length = 406

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 57/178 (32%), Gaps = 8/178 (4%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66
           R      +       +   V AGL + +A+  +  Q     +RS    V      G SL+
Sbjct: 60  RRGASTAELALITRQLATLVGAGLTIEEALKAVAEQCEKAHLRSLVATVRSKVVEGYSLA 119

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+                  +    +  G+L + L  L+     R++M+ K+    +  
Sbjct: 120 DSLGAFP-----HVFDQLFRSMVAAGEKSGHLEKVLNRLADYTEQRQHMRTKLLQAMIYP 174

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLM 182
                +   +   + T V          +     G    L+G +      G+  + L+
Sbjct: 175 IVLTCVAIGVISILLTAVVPKVVAQFEHMGQQLPGTTRFLIGTSELMQAYGLWFLLLI 232


>gi|71282431|ref|YP_271096.1| type IV pilus biogenesis protein PilC [Colwellia psychrerythraea
           34H]
 gi|71148171|gb|AAZ28644.1| type IV pilus biogenesis protein PilC [Colwellia psychrerythraea
           34H]
          Length = 419

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/164 (10%), Positives = 47/164 (28%), Gaps = 6/164 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       I   + AG+P+   + +I    ++  +R     +      G+ LS+ +    
Sbjct: 81  DIAVITRQIATMLGAGVPLVQTIEMIGKGHNNGKMRMLLGDIATKLSSGIPLSDCLRDHP 140

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G L      ++      + +K+K++       A   + 
Sbjct: 141 L-----YFDDLYCDLVASGEQSGALETIYDRIATYKEKGEALKSKIKKAMTYPIAVLVVA 195

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
             +   +   V             +     L+ +A +  +    
Sbjct: 196 FIVTSILLIFVVPVFQEIFASFGAELPAFTLMVIAISEFMQAYW 239



 Score = 37.8 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 13/129 (10%), Positives = 40/129 (31%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +  +  AG+P+ DA+    G   +   R     V      G+ ++ ++         +
Sbjct: 291 RTLSTTFAAGVPLIDALESAAGASGNAVFRDAILEVRAEVSSGMQMNLAMRN------CK 344

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                   +    +  G + + L+ ++ +   + +         +E    A +   +   
Sbjct: 345 IFPDMVIQMVAIGEESGAVDDMLSKVANVYEQQVDDAVDGLTALLEPMIMAVLGVVIGGL 404

Query: 140 VSTLVYFTS 148
           +  +     
Sbjct: 405 IIAMYLPIF 413


>gi|52425830|ref|YP_088967.1| hypothetical protein MS1775 [Mannheimia succiniciproducens MBEL55E]
 gi|52307882|gb|AAU38382.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 292

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 69/156 (44%), Gaps = 4/156 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--TQ 59
             ++K++    + D P  +D++   V+ G+ ++ A+  +              ++    +
Sbjct: 136 NMILKRKIKNMMTDLPGFVDLVAICVQTGMTINAALLRVAEDFKILNPDLSYVMLRIIRK 195

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
              + L  ++  +   +P +E+  F+TV+      G ++   L  LS  +R+ + +  + 
Sbjct: 196 AEIIGLPSALDTLAVSLPTREIRMFTTVLQQSLNFGSSIYSHLLQLSSDMRELQLLTIEE 255

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           Q  ++ AK S  +I  + F +  L+   +PG M V 
Sbjct: 256 QLGTLSAKMSVPLILFIMFPIIILI--VAPGVMRVF 289


>gi|42522078|ref|NP_967458.1| Flp pilus assembly protein TadC [Bdellovibrio bacteriovorus HD100]
 gi|39574609|emb|CAE78451.1| Flp pilus assembly protein TadC [Bdellovibrio bacteriovorus HD100]
          Length = 258

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 69/156 (44%), Gaps = 5/156 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHL 61
            K+R      D P  +D++  SV AGL    A+  IV +++     +  EF  V++   +
Sbjct: 103 KKRRELSVRADLPFFIDLLALSVEAGLDFFSAIQKIVDKANGTDSVLAEEFSIVLKDIKI 162

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S ++++  M   + + E++ F  V+      G ++S+ L + S  +R  + ++A+   
Sbjct: 163 GSSKAQALKEMAERLDMNEITSFVAVLVDAESTGASISQVLKDQSVQMRLERFVRAEKAG 222

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
                     ++  +   V  +V+   P  ++ +  
Sbjct: 223 AQASQTMLIPLMLFILPAVFIIVF--GPVAVSFMYG 256


>gi|153833197|ref|ZP_01985864.1| bipartite nuclear localization signal containing protein [Vibrio
           harveyi HY01]
 gi|156977404|ref|YP_001448310.1| hypothetical protein VIBHAR_06191 [Vibrio harveyi ATCC BAA-1116]
 gi|148870468|gb|EDL69383.1| bipartite nuclear localization signal containing protein [Vibrio
           harveyi HY01]
 gi|156528998|gb|ABU74083.1| hypothetical protein VIBHAR_06191 [Vibrio harveyi ATCC BAA-1116]
          Length = 280

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 66/156 (42%), Gaps = 4/156 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           ++   K    K     P  LD++   V+ G+ +  A+  +  + ++       ++     
Sbjct: 123 LQMRRKILIRKTSAQLPYLLDMMSVCVQTGMTIEAALVYLGKELAEFDSDLCYQIKRTSD 182

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
                 L ++++ +   +P   +  F   I    Q G ++++ L++L+  +R  + +  +
Sbjct: 183 SAKIHGLEKALNDLSERIPTPPIRSFVLTIIQNLQYGTSVAQVLSDLAEDMRKVQILTVE 242

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
            +   + AK S  +I  + F +  L+   +PG M +
Sbjct: 243 EKVGKLSAKMSVPLILFIMFPIVILI--LAPGIMQM 276


>gi|108801767|ref|YP_641964.1| type II secretion system protein [Mycobacterium sp. MCS]
 gi|119870918|ref|YP_940870.1| type II secretion system protein [Mycobacterium sp. KMS]
 gi|108772186|gb|ABG10908.1| type II secretion system protein [Mycobacterium sp. MCS]
 gi|119697007|gb|ABL94080.1| type II secretion system protein [Mycobacterium sp. KMS]
          Length = 262

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 61/171 (35%), Gaps = 1/171 (0%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +   +AL+++V  +R G     A     G+    V    R V     LG  ++  +    
Sbjct: 87  ESLQSALEVLVGELRVGAHPVAAFETAAGEIDGQVSDSLRAVAARARLGADVAAGLHDTG 146

Query: 74  RYMPLQE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           R   L       +    +    G +++  +    R + +R+   ++  A    A+A+A +
Sbjct: 147 RKSSLASQWDRIAVCWQLAQTHGLSIAALMQTAQRDIAERQRFSSRASAGMAGARATAAV 206

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           +  LP     L        + +L+    G  LL +       G++    + 
Sbjct: 207 LAGLPVLGICLGQMIGADPVRLLLGGGAGAWLLLIGVTLSCAGLLWSDRIT 257


>gi|313673605|ref|YP_004051716.1| type ii secretion system f domain [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312940361|gb|ADR19553.1| Type II secretion system F domain [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 403

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 47/166 (28%), Gaps = 6/166 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71
            +D       +   + AGLP+  A+ +I  Q+S     E    +      G   S  + +
Sbjct: 59  DEDIVIITRQLSTMISAGLPIMKALDIIASQASKKSVREMFEDIKSQIEQGAPFSRGLEK 118

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    + GG L   L  L+  +    ++K KV+A  M       
Sbjct: 119 YRNVFGD-----LYINMVRAGEAGGLLDNVLDRLAGYMEKAISLKRKVKAAMMYPSIVLT 173

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +   + + +   +                      +  +  L    
Sbjct: 174 VAVVVVWGLMVFIIPKFKEMYEGFGGTLPALTQFTINLSNFLSSWY 219



 Score = 44.3 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/130 (10%), Positives = 40/130 (30%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+P+ +A+ ++   S + V                +    + +      
Sbjct: 271 FSRTLGTLLNSGVPILEALDIVAKTSGNKVIE-----KHLMRSKTDIESGKNIVYPLEKA 325

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                  T +    +  G L + L  ++    D  +   +     +E     ++ G++ F
Sbjct: 326 GVFPPMVTQMISVGEETGALDQMLTKIADFYDDEVDRAVEGLTKLVEPMLMLFVGGAVGF 385

Query: 139 CVSTLVYFTS 148
            +  +     
Sbjct: 386 VIIAMYLPIF 395


>gi|119773848|ref|YP_926588.1| putative type II secretion system protein F [Shewanella amazonensis
           SB2B]
 gi|119766348|gb|ABL98918.1| putative type II secretion system protein F [Shewanella amazonensis
           SB2B]
          Length = 287

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 69/157 (43%), Gaps = 2/157 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +  L + R  + +   P  LD +  ++ AGL +S A+A  V +    P++ EF +VI   
Sbjct: 131 LNDLRRTRQEQIVKVLPVYLDYLTMAIEAGLNMSAAIAQAVERGPDGPLKIEFEKVIRDM 190

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G+S +++   M   + + E++   + ++   + G +L   L   +   R  +  +A+ 
Sbjct: 191 RAGISRAQAFRNMADRVQISELNSLVSALAQAERTGASLGYTLRIQADQRRVERFQRAEK 250

Query: 120 QALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +A+    K     I+   P     L++     ++  +
Sbjct: 251 KAMEAPIKLMFPLIMFIFPVTFLILLFPILSKFLFEM 287


>gi|327398636|ref|YP_004339505.1| Type II secretion system F domain-containing protein [Hippea
           maritima DSM 10411]
 gi|327181265|gb|AEA33446.1| Type II secretion system F domain protein [Hippea maritima DSM
           10411]
          Length = 401

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/173 (11%), Positives = 53/173 (30%), Gaps = 4/173 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             +       +   + +GLP+ +++ ++  Q+      E    ++ +      S +    
Sbjct: 60  DKELMIVTKQLASMLSSGLPLDESLNIMAEQAETKKMGEVLYSVKQRVE----SGASLSQ 115

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    S     +    +  GNL   L  LS ++     +K K++   +       +
Sbjct: 116 ALSDHKDVFSPMYIHMVNAGEQTGNLDGVLKRLSEMMEKHITLKRKIKGALIYPTMVTIV 175

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              +   + T V  T     +           + +  +  +    +  L+I  
Sbjct: 176 AVGVIALIMTFVIPTFADMYSSSGMHLPLPTQIVINVSLFMKKYFLTMLIIFI 228



 Score = 37.4 bits (85), Expect = 0.95,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 49/134 (36%), Gaps = 7/134 (5%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMVR 74
             N   I+     +G+ + DA+++    + + +  E    V +    G +LS S++    
Sbjct: 267 IANFTTILASLSSSGVDILDALSISAKTAGNLIMEETLTEVKDMVKKGENLSFSMASSGE 326

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           +  +         ++   +  G L E +  +S+   +  +   K     +E      + G
Sbjct: 327 FPDM------VIQMAAVGEETGTLDEMMQKISQYYEEEVDNAVKNLTSMIEPILIIVLGG 380

Query: 135 SLPFCVSTLVYFTS 148
            + F V ++     
Sbjct: 381 IIGFLVVSMYLPIF 394


>gi|238922469|ref|YP_002935982.1| hypothetical protein EUBREC_0043 [Eubacterium rectale ATCC 33656]
 gi|238874141|gb|ACR73848.1| Hypothetical protein EUBREC_0043 [Eubacterium rectale ATCC 33656]
          Length = 258

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 71/189 (37%), Gaps = 6/189 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRVIET 58
           ++++  K  ++F N L ++  ++ AG  V +A      +          + SE R +   
Sbjct: 68  VRRQKEKLNEEFMNVLKVLSSNMLAGYSVENAWQEAEKEMELMYGNDSLMLSEIREMNRQ 127

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +  +    +S       L+++  FS + S   + GG   + + + +  +  + +   +
Sbjct: 128 IKMNQTFEAVLSEFAHRSGLEDIVNFSDIFSFAKRSGGRFVDIIESTTYRMWTKYDTNRQ 187

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           ++      +     +  +P  +   +  +S  YM+ L  +  G + +          I +
Sbjct: 188 IEVAVSAKRLEQKTMNYIPIFLLAFLKLSSRDYMSALYGNLIGVIFMSTCLLAYAGAIKL 247

Query: 179 MRLMINFDV 187
            +  +   +
Sbjct: 248 AKKFLQVGI 256


>gi|226309726|ref|YP_002769620.1| hypothetical protein BBR47_01390 [Brevibacillus brevis NBRC 100599]
 gi|226092674|dbj|BAH41116.1| hypothetical membrane protein [Brevibacillus brevis NBRC 100599]
          Length = 298

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 75/171 (43%), Gaps = 2/171 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQHLGLS 64
           +R   F      A+ ++  S+R       A   +      S+ V  E+RR++E     + 
Sbjct: 112 RRKEDFEAGNVKAIRLMASSLRTSPSYLHAFEQVATSPFLSEIVLEEYRRIVELLRAQVP 171

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L   ++R        +V + +T++ +Q ++GG++++ L   +  +  R+    + +A   
Sbjct: 172 LEHVMNRFFERTGSADVKYLATIVHIQREMGGDMAKTLDLAASSILRRRQSLRRQKAAMA 231

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           +  A   ++  +PF     +Y  +P + + L     G  L+  + A +LIG
Sbjct: 232 QIVAQVNLLSVMPFVFVIALYVNNPNHFDPLTATIGGRFLILGSLASILIG 282


>gi|298528955|ref|ZP_07016358.1| Type II secretion system F domain protein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510391|gb|EFI34294.1| Type II secretion system F domain protein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 401

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 57/169 (33%), Gaps = 7/169 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
             D           + AG+P+  A+ V+  Q+ +  +R +   V      G SL +S+ +
Sbjct: 61  SRDMVVFSRQFATLINAGVPILQALQVMCDQTENKILRRKLYEVKNDIEGGSSLYDSLKK 120

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                         T +    + GG L   L  L+R +     +KA+V++  +       
Sbjct: 121 HPD-----VFDDLYTNMVDAGEAGGVLDLVLDRLARYIEKAARLKARVKSALIYPGVIIT 175

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA-FMLIGIMVM 179
           +  ++   +   V  T                   +  + F+   ++ +
Sbjct: 176 VAVAVIAIILIFVIPTFEDMFADFGGALPAPTQFVIGLSRFVSQNVLWI 224



 Score = 39.7 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/130 (10%), Positives = 38/130 (29%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+P+  A+ ++   + +       +         S++E  S        
Sbjct: 270 FSRTMSTMISSGVPILSALDIVSRTAGNKSVEHAVQ-----EAKQSITEGQSLAEPLSET 324

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                  T +    +  G L   L  ++    D  ++        +E     ++   +  
Sbjct: 325 GIFPPMVTQMISIGETTGALDGMLEKIADFYDDEVDVAVDTLTSLLEPIMIVFLGVVVGG 384

Query: 139 CVSTLVYFTS 148
            V ++     
Sbjct: 385 LVISMYLPIF 394


>gi|315652231|ref|ZP_07905226.1| Kae1-associated kinase [Eubacterium saburreum DSM 3986]
 gi|315485537|gb|EFU75924.1| Kae1-associated kinase [Eubacterium saburreum DSM 3986]
          Length = 266

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 79/192 (41%), Gaps = 8/192 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55
           K+  +KR    L +F + L+ +  S  +G    +A A               + +E R +
Sbjct: 77  KYRKEKRQRDLLIEFRDLLEALTTSYSSGKNTMEAFAESYQDLLSLYGEKSDIVNETRII 136

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           I      + + + +        L++V  F++      + GG++ + + +  +I+ D+  +
Sbjct: 137 IAGMTNNIIIEDLLRDFAERCGLEDVESFTSTFESGLRQGGDIRQVVWDSRKIINDKIEI 196

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + +++ +  E +    I+  +P  +   +     G M+ +IN P   ++   A       
Sbjct: 197 EMEIKTMLTEKENELNIMMVMPLIIMVTLSGI--GTMSAVINTPFTVIVKIFAIGLFAAA 254

Query: 176 IMVMRLMINFDV 187
            M+ R +IN  +
Sbjct: 255 YMMGRKIINIRI 266


>gi|167625754|ref|YP_001676048.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
 gi|167355776|gb|ABZ78389.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
          Length = 406

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/165 (10%), Positives = 50/165 (30%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRM 72
           ++       +    R+G+P+  A+A +   +      E    +      G  LS ++++ 
Sbjct: 64  EELQIFTRQMYSLTRSGIPILRAIAGLSETTHSVRMKEALDDISAQLTSGRPLSSAMNQH 123

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L +A   LS  +   +  + +++A           
Sbjct: 124 PD-----VFDALFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRIKAAMRYPIFVLIA 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           I      ++ +V        +    D      + +  + + +   
Sbjct: 179 IAIAMVILNIMVIPKFAEMFSRFGADLPWATKILINTSNLFVNYW 223



 Score = 42.0 bits (97), Expect = 0.040,   Method: Composition-based stats.
 Identities = 10/132 (7%), Positives = 35/132 (26%), Gaps = 5/132 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                      + AG+P++ A++++     +              +   +    S +   
Sbjct: 269 LSRYCRSFSMMLSAGVPMTQALSLVADAVDNAYMH-----DRIVGMRRGIESGESMLRVS 323

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
              Q  +     +    +  G + + L + +       +   K     +E     ++   
Sbjct: 324 NNCQLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGFVACI 383

Query: 136 LPFCVSTLVYFT 147
           +      +    
Sbjct: 384 VLVLALGIYLPM 395


>gi|14521587|ref|NP_127063.1| hypothetical protein PAB1459 [Pyrococcus abyssi GE5]
 gi|5458806|emb|CAB50293.1| Bacterial type II secretion system protein F domain, putative
           [Pyrococcus abyssi GE5]
          Length = 308

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 67/180 (37%), Gaps = 4/180 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
              I KR  +     P+A   +  S+RAG+  S+A+  +       + +EFRR +     
Sbjct: 88  NFRIAKRIEEMEKALPDAFFYLAGSLRAGVSFSEALEELATAKFGALTAEFRRTVAEMKR 147

Query: 62  GLSLSESISRMV-RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           G    +++     R      V     ++    + G  +++ L ++   +R+   +K + +
Sbjct: 148 GRPTVDALRAFALRNKKSPIVYRSMMIVIEALERGAPMADVLVSVGNDVREILRIKKERK 207

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM---NVLINDPRGHMLLGVAAAFMLIGIM 177
           A +          G     +   +      ++    + +  P G + L +    ++ G +
Sbjct: 208 ASTGMQMMFFLTSGGFVGPMIVAIVSRISEFVNTSGMQVQLPSGELKLILWLFSVIQGFV 267


>gi|320531263|ref|ZP_08032242.1| type II secretion system F domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320136530|gb|EFW28499.1| type II secretion system F domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 283

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 68/173 (39%), Gaps = 3/173 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           + +P A+D +V  VRAG+ + +A+  +  +  + VR +FR              S+ R+ 
Sbjct: 105 EVWPEAVDTLVSGVRAGMSLPEALTNLGERGPEAVRPQFRAFATDYAASARFDSSLDRLK 164

Query: 74  RYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                         + +     G +L   L +LS++LR+    + +++A        A +
Sbjct: 165 ARFADPVADRIVEALRLAHEVGGTDLGTLLRSLSQMLREDMRTRGELEARQSWTVNGAKV 224

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             + P+ V  L+  T P             ++L V A   +I   +M  +   
Sbjct: 225 AVAAPWLVLALLS-TRPQAAAAYATTAG-AVILLVGAVVSVIAYRLMLRLGRL 275


>gi|309792339|ref|ZP_07686809.1| type II secretion system protein [Oscillochloris trichoides DG6]
 gi|308225654|gb|EFO79412.1| type II secretion system protein [Oscillochloris trichoides DG6]
          Length = 309

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 1/158 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   IKKR        P+ALD++  SV AGL    A+  +  +  D +  EF++V+    
Sbjct: 152 LGQQIKKRKKSITKALPDALDLLCISVEAGLAFDLALQRVTQKWDDELSREFKKVLSDIR 211

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +  E++  +     + +V  F+  +    QLG ++S+ L   S  +R R+  +A+  
Sbjct: 212 LGRTRREALKDLGVRTGVDDVQTFTAAVIQADQLGVSMSKILRLQSDQMRQRRRQRAEEA 271

Query: 121 ALSMEAKA-SAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           A     K     +    P     ++    P  M    +
Sbjct: 272 AQQAPIKMLFPMVFLIFPALFVVILGPAVPRIMESFGS 309


>gi|146305809|ref|YP_001186274.1| type II secretion system protein [Pseudomonas mendocina ymp]
 gi|145574010|gb|ABP83542.1| type II secretion system protein [Pseudomonas mendocina ymp]
          Length = 405

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/184 (10%), Positives = 53/184 (28%), Gaps = 8/184 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +     K+              +   ++AG+P+  +  +I        +R     V +  
Sbjct: 55  LSFGKGKKIKPMDIAL--FTRQMATMMKAGVPLLQSFDIIGEGFDNPNMRKLIDEVKQEV 112

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G S + S+ +                +    +  G L   L  ++      + +KAK+
Sbjct: 113 AAGNSFATSLRKKPE-----YFDELYCNLVESGEQAGALENLLDRIATYKEKTEALKAKI 167

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +       A   +   +   +   V        +    +      + +  + +L     +
Sbjct: 168 KKAMNYPIAVIVVAVVVTAILLIKVVPQFQDVFSNFGAELPAFTQMIIGLSEILQKWWFV 227

Query: 180 RLMI 183
            L+ 
Sbjct: 228 VLIA 231



 Score = 34.7 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 38/130 (29%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +  +  AG+P+ DA+  + G + + V         T  +   +S  +         
Sbjct: 275 FARTLSTTFAAGVPLVDALDSVSGATGNVVFK-----NATNKIKADVSTGMQLNFSMRTT 329

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                 +  ++   +  G L E L  ++       +         ME    A +   +  
Sbjct: 330 GIFPAMAVQMTAIGEESGALDEMLDKVASFYETEVDNMVDGLTALMEPMIMAVLGVLVGG 389

Query: 139 CVSTLVYFTS 148
            V  +     
Sbjct: 390 LVIAMYLPIF 399


>gi|66871270|gb|AAC23568.2| truncated type IV pilus assembly protein TapC [Aeromonas
           salmonicida]
 gi|88866545|gb|ABD57322.1| truncated TapC [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 342

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/158 (9%), Positives = 44/158 (27%), Gaps = 6/158 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQ 79
             I   + AG+P+  ++ +I          E   ++      G  +S+++ R  R+    
Sbjct: 80  RQITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSDALRRHPRH---- 135

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                   +    +  G L      ++      + +K+K++           +   +   
Sbjct: 136 -FDALYCDLVEAGEQSGALETIYDRIATYREKSEALKSKIKKAMFYPAMVILVAIVVTSI 194

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +   V             +        +  +  +    
Sbjct: 195 LLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQNWW 232


>gi|255994748|ref|ZP_05427883.1| hypothetical protein GCWU000322_00832 [Eubacterium saphenum ATCC
           49989]
 gi|255993461|gb|EEU03550.1| hypothetical protein GCWU000322_00832 [Eubacterium saphenum ATCC
           49989]
          Length = 250

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 78/187 (41%), Gaps = 7/187 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVA------VIVGQSSDPVRSEFRRVIETQHL 61
           R AK L  F + L  +  S      + +A+        +V      +  E   +  +   
Sbjct: 64  RQAKMLSQFQDLLHSLSASFSVNKSMGEAIRQGRIVVELVHGKKAILAQELEIMHRSIAE 123

Query: 62  GLSLSE-SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
              +         +   ++++  F+   S   + GGN+ +A+ +   ++ ++ ++  +++
Sbjct: 124 NNVVDTEVWDDFAKRSGMEDIENFARTYSTCKETGGNIIKAVGDACEVISEKISISKEIK 183

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ + K    II  +P  V TL+   +  Y+  +     G +++GVA   +++ + ++ 
Sbjct: 184 AITNQKKVEGRIILIMPIVVLTLLNLFAYDYIAPMYTSSSGRVMMGVALGLLIVAVYMVE 243

Query: 181 LMINFDV 187
            +    V
Sbjct: 244 KITRIRV 250


>gi|330960771|gb|EGH61031.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 405

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/180 (10%), Positives = 51/180 (28%), Gaps = 18/180 (10%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73
           D       +   ++AG+P+  +  +I   + +P        + +    G S + ++ +  
Sbjct: 67  DIAFFSRQMATMMKAGVPLLQSFDIISEGAENPNMRALVGSLKQEVSAGNSFATALRKKP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G L   L  ++      + +KAK++       A   + 
Sbjct: 127 E-----YFDDLFCNLVDAGEQAGALESLLDRVASYKEKTEKLKAKIKKAMTYPTAVLIVA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA------------AFMLIGIMVMRL 181
             +   +   V             +     L+ +A                 +   +++ 
Sbjct: 182 FIVSGILLIKVVPQFQSVFAGFNAELPAFTLMVIALSEVVQQWWLAIVVLFFVTFFMLKR 241



 Score = 38.2 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 14/128 (10%), Positives = 37/128 (28%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +  +  AG+P+ +A+  + G + + V            +   +S  +           
Sbjct: 277 RTLATTFAAGVPLVEALDSVAGATGNVVFR-----NAVNQVKQDVSTGMQLNFSMRSTGV 331

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
               +  ++   +  G L   L  ++    +  +         ME    A +   +   V
Sbjct: 332 FPSLAIQMTAIGEESGALDAMLDKVATYYEEEVDNMVDSLTSLMEPMIMAVLGVIVGGLV 391

Query: 141 STLVYFTS 148
             +     
Sbjct: 392 IAMYLPIF 399


>gi|330830592|ref|YP_004393544.1| general secretion pathway protein F [Aeromonas veronii B565]
 gi|328805728|gb|AEB50927.1| General secretion pathway protein F [Aeromonas veronii B565]
          Length = 406

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 57/178 (32%), Gaps = 8/178 (4%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66
           R      +       +   V AGL + +A+  +  Q     +RS    V      G SL+
Sbjct: 60  RRGASTAELALITRQLATLVGAGLTIEEALKAVAEQCEKAHLRSLVATVRSKVVEGYSLA 119

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+                  +    +  G+L + L  L+     R++M+ K+    +  
Sbjct: 120 DSLGAFP-----HVFDQLFRSMVAAGEKSGHLEKVLNRLADYTEQRQHMRTKLLQAMIYP 174

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLM 182
                +   +   + T V          +     G    L+G +      G+  + L+
Sbjct: 175 IVLTCVAIGVISILLTAVVPKVVAQFEHMGQQLPGTTRFLIGTSELMQAYGLWFLLLI 232


>gi|317154600|ref|YP_004122648.1| type II secretion system F domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944851|gb|ADU63902.1| Type II secretion system F domain protein [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 317

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 63/149 (42%), Gaps = 4/149 (2%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSE 67
              ++ P+ALD++V  V +G+ +  A+  +  +       + +EF+ +      G    +
Sbjct: 164 AVANELPDALDLLVVCVESGMGLDQALDRVCHEMRTSGPVISAEFKLLTLELRAGKGRGD 223

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS-MEA 126
           ++  +   + L +++  ++++      G ++   L   S  +R +++ +A+ +A      
Sbjct: 224 ALRGLSERVGLDDLNSLTSLLVQADIFGISVGRTLRVYSDAMRTKRSQRAEEKAAKLPVL 283

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                I   LP     ++      +++V 
Sbjct: 284 LLLPLIGFILPALFIAIMGPAVILFIDVF 312


>gi|59713079|ref|YP_205855.1| general secretion pathway protein F [Vibrio fischeri ES114]
 gi|197336415|ref|YP_002157257.1| general secretion pathway protein F [Vibrio fischeri MJ11]
 gi|59481180|gb|AAW86967.1| general secretion pathway protein F [Vibrio fischeri ES114]
 gi|197317905|gb|ACH67352.1| general secretion pathway protein F [Vibrio fischeri MJ11]
          Length = 404

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 48/157 (30%), Gaps = 7/157 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +D       +   V+AG+P+ +++  +  Q          R +        +        
Sbjct: 65  NDLSLITRQLATLVQAGMPLEESLKAVAEQGE----KAHIRSMMMGVRSRVIEGYPLAES 120

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G+L   L  L+    +R+ M++K+Q   +       + 
Sbjct: 121 FADYPHVFDDLFCSMVAAGEKSGHLDTVLNRLADYAENRQKMRSKLQQAMIYPI---MLT 177

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
                 +S L+    P  ++  +   +G   +     
Sbjct: 178 LIAIAVISFLLATVVPKIVDQFVQMGQGLPTVTEVLL 214


>gi|120600397|ref|YP_964971.1| type II secretion system protein [Shewanella sp. W3-18-1]
 gi|146291671|ref|YP_001182095.1| type II secretion system protein [Shewanella putrefaciens CN-32]
 gi|120560490|gb|ABM26417.1| type II secretion system protein [Shewanella sp. W3-18-1]
 gi|145563361|gb|ABP74296.1| type II secretion system protein [Shewanella putrefaciens CN-32]
          Length = 406

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/165 (11%), Positives = 52/165 (31%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
           D+       +    R+G+P+  A+A +   +    ++     + E    G  LS ++++ 
Sbjct: 64  DELQIFTRQMYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSAMNQH 123

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L +A   LS  +   +  + +++A           
Sbjct: 124 PE-----VFDSLFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRIKAAMRYPIFVLIA 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           I      ++ +V        +    D      + +  + + +   
Sbjct: 179 ITIAMVILNIMVIPKFAEMFSRFGADLPWATKVLIGTSNLFVNYW 223



 Score = 40.1 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/135 (7%), Positives = 34/135 (25%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         + AG+P++ A++++     +              +   +    S +
Sbjct: 266 RSTLSRYCRSFSMMLSAGVPMTQALSLVADAVDNAYMH-----DRIVGMRRGIESGDSVL 320

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 Q  +     +    +  G + + L + +       +   K     +E      +
Sbjct: 321 RVSNQSQLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGIV 380

Query: 133 IGSLPFCVSTLVYFT 147
              +      +    
Sbjct: 381 AVIVLVLALGIYLPM 395


>gi|223940665|ref|ZP_03632506.1| type II secretion system protein [bacterium Ellin514]
 gi|223890677|gb|EEF57197.1| type II secretion system protein [bacterium Ellin514]
          Length = 425

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 68/188 (36%), Gaps = 6/188 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ 59
           M+ L++++    L +       +   +++G+P++ A+  +   +S        +++ +  
Sbjct: 72  MRELLERKRKPKLQELGTFTQQLANLLQSGMPLTVALNSMTHLESKGISSEVSKQLKQDV 131

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G  LS+++++          S     +    +  G L+E L  LS        +++K 
Sbjct: 132 MEGKGLSDAMAKQPLI-----FSDLYVNMVRAGEQSGALTEVLKRLSDHYERFSQVQSKF 186

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            +  +       +   + F   T +  T       +  +      + +  + +  G   +
Sbjct: 187 TSALIYPAFVITVGSIIMFLFMTKMLPTFMKIFEGMNIELPLPTRILIGLSHLFSGYWWL 246

Query: 180 RLMINFDV 187
            ++    V
Sbjct: 247 MILTVVAV 254


>gi|15606135|ref|NP_213512.1| fimbrial assembly protein PilC [Aquifex aeolicus VF5]
 gi|2983312|gb|AAC06902.1| fimbrial assembly protein PilC [Aquifex aeolicus VF5]
          Length = 408

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 51/162 (31%), Gaps = 6/162 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
             D+      +   V AG+ + +A+ ++  Q  +  +R       +    G S+ +++++
Sbjct: 66  ERDWSLLCRQLSVLVGAGVSIVEAIELVAEQMQNKKLRKALMETAKDIEEGSSIHDALAK 125

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                       F   +    +  G L   L   +        +K K+++ S        
Sbjct: 126 -----RKNIFPEFLINLVEVGEETGELDLVLRRAAEYYEKIAFIKGKIKSASFYPTFVMI 180

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
              ++ + + T V          L         L +  +  L
Sbjct: 181 FATAIVWFILTFVVPKFAEIYKSLGGTLPAPTQLLIDISLTL 222



 Score = 37.0 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/135 (7%), Positives = 36/135 (26%), Gaps = 7/135 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            F      +     +G+P+   + +        P+        +    G +L  ++    
Sbjct: 272 AFARFARTMATLFASGVPLERVLEISGRVVGFIPIEKALNEARKEVLEGKNLWMALQN-- 329

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +        +    +  G + + L +++    +  +   +     +E      + 
Sbjct: 330 ----TEMFPKMIIAMVRVGEETGQMDQMLNSIANFYEEEVDRSIEGLVALIEPALIVILG 385

Query: 134 GSLPFCVSTLVYFTS 148
             +   +  L     
Sbjct: 386 VIIGAILIALYLPIF 400


>gi|55980763|ref|YP_144060.1| pilus assembly protein PilC [Thermus thermophilus HB8]
 gi|55772176|dbj|BAD70617.1| pilus assembly protein PilC [Thermus thermophilus HB8]
          Length = 406

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 49/157 (31%), Gaps = 5/157 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            D       +   + AGL +  A+A++  Q+ +    E  + +        +   ++   
Sbjct: 65  KDLAIFSRQLATMLGAGLTLLQALAILERQTENRKFREILKQVR-----TDVEGGMAFSE 119

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +  S     +    +  G L   L  L+  L     ++ K+++            
Sbjct: 120 ALSKHKIFSRLYVNLVRAGETSGGLDLILDRLASFLEKELELRGKIRSAMTYPVIVFVFA 179

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             + + + T +       +  L ++        +A +
Sbjct: 180 VGVAYFLLTGIVPQFAQILTDLGSELPLLTRFLIAVS 216



 Score = 38.6 bits (88), Expect = 0.44,   Method: Composition-based stats.
 Identities = 10/130 (7%), Positives = 37/130 (28%), Gaps = 4/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+ + +A+ +  G + + V  E     + +            +      
Sbjct: 272 FSRTLALLLSSGVNIVEALDITKGTAGNSVVEEIVEAAKLKIQQGDP----LNLTLAQHP 327

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                  + +    +  G L   L+ ++       +        ++E     ++   +  
Sbjct: 328 FVFPPMVSSMVAIGEETGALDTMLSKVADFYEREVDEAVASLTAAIEPLMIIFLGVIVGM 387

Query: 139 CVSTLVYFTS 148
            V+ +     
Sbjct: 388 IVAGMFLPLF 397


>gi|119714630|ref|YP_921595.1| type II secretion system protein [Nocardioides sp. JS614]
 gi|119535291|gb|ABL79908.1| type II secretion system protein [Nocardioides sp. JS614]
          Length = 258

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 58/162 (35%), Gaps = 6/162 (3%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV-RYM 76
           +  +++   + AG P  +A+                RV E   +G  +  ++  +     
Sbjct: 90  DTCELLAGELTAGRPPGEALQRAAASWPPL-----ARVAEAFRVGADVPSALRVLAADLE 144

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
             +++   +    V  + G  L+ A+  ++  LR     +  V      A+A+A ++  L
Sbjct: 145 GARDLRVVAAAWQVAHRTGQGLASAVERVAESLRAGAATRRMVTGELGSARATARLVAGL 204

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           P     +           L+  P G + L    AF L G+  
Sbjct: 205 PVLALAMGSGAGGDPWGFLLGHPAGLLCLAGGLAFGLAGLWW 246


>gi|94312325|ref|YP_585535.1| general secretion pathway protein F [Cupriavidus metallidurans
           CH34]
 gi|93356177|gb|ABF10266.1| general secretory pathway component, cryptic [Cupriavidus
           metallidurans CH34]
          Length = 405

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/173 (10%), Positives = 55/173 (31%), Gaps = 8/173 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSL 65
           +R +            +   + +GLP+ +A+  +  Q+      E    +      G SL
Sbjct: 61  RRLSTQEQAL--FTRQLASLIVSGLPLDEALGALADQAERQYVHELLAGIRAEVMGGSSL 118

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S ++++  +     +       +    +  G+L   L  L+  +  R  + +K++     
Sbjct: 119 SVALAQHPK-----DFPDIYRALVSAGEHSGHLGMVLERLATYIETRNTLTSKIRLAFTY 173

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                 +  ++   + + V                   ++ +A +  +     
Sbjct: 174 PAIVTVVAFAIVIFLLSYVVPQVVSVFANTKQKLPTLTVIMLALSDFVRNWWW 226



 Score = 37.0 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +   V AG+P+  ++       ++                G SL+ +++   ++ P
Sbjct: 274 FASTLSILVSAGVPILRSLQAAGETLTNQALKANVEDATTRVREGASLARALAAQNQFPP 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  GNL   L   +         +       +E      +   + 
Sbjct: 334 ------VLVHLIRSGEATGNLPTMLDRAATGEGQELERRTLFLTSLLEPLLILTMGVVVL 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 MIVLAVLMPI 397


>gi|92114297|ref|YP_574225.1| type II secretion system protein [Chromohalobacter salexigens DSM
           3043]
 gi|91797387|gb|ABE59526.1| type II secretion system protein [Chromohalobacter salexigens DSM
           3043]
          Length = 410

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 52/165 (31%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +RAG+P+  A +V+        +      ++     G S SE++++ 
Sbjct: 71  QDITLFARQMATMIRAGIPLLQAFSVVSESLKRPAMHHLIETLMNEVSAGASFSEALAQH 130

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            ++            +    +  G+L   L  ++       +++A+V+       A   +
Sbjct: 131 PQH-----FDRMFVNMVEAGEQSGSLDRMLERVASYKEKIDSLRARVRKALYYPAAVVLV 185

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
              +   +   V             D      L +A +  +    
Sbjct: 186 GMGVTALLLVKVVPQFESLFRGFGADLPAFTQLTIALSQWVQAYW 230


>gi|77361606|ref|YP_341181.1| mannose-sensitive agglutinin (MSHA) biogenesis protein MshG (pilus
           type IV) [Pseudoalteromonas haloplanktis TAC125]
 gi|76876517|emb|CAI87739.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein
           MshG (pilus type IV) [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 406

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/171 (11%), Positives = 55/171 (32%), Gaps = 6/171 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72
           +D       +   ++AG+P+  A+  +   + +         V +    G  LS +    
Sbjct: 65  EDMIMFSRQMYSLLKAGIPIIRAMVGLADTTQNKAFKQVLMEVTKQLEQGRDLSSA---- 120

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              M  +  S  +  + +  +  G L +A   L+      +  + +++A           
Sbjct: 121 -MSMHNKVFSRLTISMVMVGEGAGRLEDAFYQLAIYFEKEQETRKRIKAAMRYPTFVICA 179

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           +      ++  V  T          D      + +A +   +    + +++
Sbjct: 180 LVGAMIILNIFVIPTFASMFAKFNADLPLMTQILIATSNFFVNYWWLLILM 230


>gi|117922092|ref|YP_871284.1| type II secretion system protein [Shewanella sp. ANA-3]
 gi|117614424|gb|ABK49878.1| type II secretion system protein [Shewanella sp. ANA-3]
          Length = 406

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 57/178 (32%), Gaps = 8/178 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           +  L K++    LD+       +    R+G+P+  A+A +   +    ++     + E  
Sbjct: 53  LAQLFKRKVG--LDELQIFTRQMYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQL 110

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G  LS ++++                +    +  G L +A   LS  +   +  + ++
Sbjct: 111 TAGRPLSSAMNQHPD-----VFDSLFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRI 165

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +A           I      ++ +V             D      + +  + + +   
Sbjct: 166 KAAMRYPIFVLIAIALAMVILNIMVIPKFAEMFARFGADLPWATKVLIGTSNLFVNYW 223



 Score = 39.3 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 9/135 (6%), Positives = 35/135 (25%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         + AG+P++ A++++     +    +    +        +    S +
Sbjct: 266 RSTLSRYCRSFSMMLSAGVPMTQALSLVADAVDNAYMHDKIVGMRR-----GIESGESML 320

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 +  +     +    +  G + + L + +       +   K     +E      +
Sbjct: 321 RVSNQSKLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGIV 380

Query: 133 IGSLPFCVSTLVYFT 147
              +      +    
Sbjct: 381 AAIVLVLALGIYLPM 395


>gi|218961672|ref|YP_001741447.1| type IV pilus biogenesis protein PilC [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730329|emb|CAO81241.1| type IV pilus biogenesis protein PilC [Candidatus Cloacamonas
           acidaminovorans]
          Length = 417

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/171 (12%), Positives = 54/171 (31%), Gaps = 6/171 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                    +     AGL +  A++ +   + S       R++ +    G SLSE++ + 
Sbjct: 74  KSLVFFTRQLSTMFSAGLTIEKAISDLEKEEKSKKFAKVLRKLSDDIRKGYSLSEAMQQH 133

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    +     +    ++ G L   L  L+  L   ++ + KV +           
Sbjct: 134 P-----GVFNPLYIALVTAGEVSGTLHTVLDELADYLEKMEDTRRKVYSALAYPIFIVIF 188

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           +  + + +   +             D      L +  +  +   + M ++I
Sbjct: 189 LCFVVWGMFYYIIPMFADVYANFHADLPAPTTLAINISHFITNNVFMFIVI 239


>gi|256397304|ref|YP_003118868.1| type II secretion system protein [Catenulispora acidiphila DSM
           44928]
 gi|256363530|gb|ACU77027.1| type II secretion system protein [Catenulispora acidiphila DSM
           44928]
          Length = 303

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 62/174 (35%), Gaps = 2/174 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +      + +  ++   + +  A+      +S  +R     +++     + L +++    
Sbjct: 105 EALAGWTESLRDTIAGAVGLEQAIPATARAASPAIRENLHTLVDRLRARMPLPQALEYFA 164

Query: 74  RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             M           + + ++  G  L E L  L++  R+  +M+ +V A     + S  I
Sbjct: 165 DDMDDASADLVIAALILNARLRGPGLREVLGALAQSSREEVDMRQRVMAQRSSTRRSVQI 224

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           +  +   V   +   +  ++    +   G ++L         G   +R + + +
Sbjct: 225 VVGVSVAVVLGLAVFNKSFVQP-YSTATGQLVLLGVIGLFAAGFFWLRKLSSIE 277


>gi|297568843|ref|YP_003690187.1| Type II secretion system F domain protein [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924758|gb|ADH85568.1| Type II secretion system F domain protein [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 402

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/165 (11%), Positives = 51/165 (30%), Gaps = 6/165 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AGLP+  ++ ++  Q  +P  +   + V      G + ++S+ +      
Sbjct: 68  FTRQLSTMIDAGLPLVQSLQILGDQQENPTFKKVLKEVRTDVETGSTFADSLKKHPEI-- 125

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    ++GG L    + L+  +   + ++ KV+           I   + 
Sbjct: 126 ---FDNLYCNMMEAGEVGGILDTICSRLAVFMEKSQALQKKVKGAMTYPIICLAISLIVM 182

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
             +   V            +       + V  +       +  L+
Sbjct: 183 AVMLIFVVPVFEEMFADFGSALPAPTQVVVNFSEFAQSYFIYMLI 227



 Score = 40.1 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/130 (9%), Positives = 39/130 (30%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   +++G+P+ +++ V+   + + V    R V+               +      
Sbjct: 271 FSRTLGTMLQSGVPILESLRVVARTAGNKV--IERSVLRVTDSIREGRAIAEPLAETGVF 328

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G L   L  ++    +  +   +    ++E     ++ G +  
Sbjct: 329 PG---MVVQMINVGEATGALDTMLVKIADFYDEEVDQAVENLTAAIEPLMMVFLGGMIGG 385

Query: 139 CVSTLVYFTS 148
            V  +     
Sbjct: 386 LVVAMYLPIF 395


>gi|313679704|ref|YP_004057443.1| type II secretion system f domain [Oceanithermus profundus DSM
           14977]
 gi|313152419|gb|ADR36270.1| Type II secretion system F domain [Oceanithermus profundus DSM
           14977]
          Length = 406

 Score = 69.0 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 54/158 (34%), Gaps = 10/158 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
            D       +   + AGLP+  A+A++  Q+ +   +   + +      G S S+++++ 
Sbjct: 65  KDVAIFSRQLATMLSAGLPIVQAIAILERQTENKAFQKLLKEIRTDVEGGSSFSDALTKH 124

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 +  S     +    +  G L   L  L+  L     ++ K+++          +
Sbjct: 125 ------KVFSRLYVNLVRAGETSGTLDGVLDRLATFLEKDLELRGKIKSAMTYPV---IV 175

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           +         L+    P +  +L +      LL     
Sbjct: 176 LVFALLVTYFLLTGIVPQFAQILTDLGSELPLLTRFLI 213


>gi|298674469|ref|YP_003726219.1| type II secretion system F domain-containing protein
           [Methanohalobium evestigatum Z-7303]
 gi|298287457|gb|ADI73423.1| Type II secretion system F domain protein [Methanohalobium
           evestigatum Z-7303]
          Length = 750

 Score = 69.0 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 70/169 (41%), Gaps = 4/169 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
             KR  K   +FP+ L  +  +V  G+ + D++ ++V   ++ +  E R++ +    G+ 
Sbjct: 528 KSKRQKKLDGNFPDFLKKLASTVETGMTLQDSIKLMVKTDNEGLSDETRKIWKDISWGME 587

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L++++ R    +  Q VS   T+I+  ++  G++ E L   +R     + MK +     M
Sbjct: 588 LNDALVRFANRLKTQVVSRSMTLITKANESSGDIGEVLMVAARDASSEEEMKRERSMNMM 647

Query: 125 EAKASAWIIGSLPFCVSTLVYFTS----PGYMNVLINDPRGHMLLGVAA 169
                 +I   +   V  ++  T           + +     M +  + 
Sbjct: 648 IYIVIIYISYMVFVGVIYVISTTFLTEMAEAGEQMTSSGAQQMGMLGSF 696



 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 60/186 (32%), Gaps = 7/186 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQH 60
               +R        P A+  +    + G+ + +    +     +      E   +I    
Sbjct: 209 FQASERKRNIDSHLPYAVTFMYALSKGGMNIINVFDSLSRSSNTYGEASKEVETIIREMD 268

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                L  +IS +    P          +      GG++S+   + S     +     K 
Sbjct: 269 YFGHDLRTAISNVSEMTPSDRFQDLLHNLLTVIDSGGSISKYFQDKSDQYLKKAIDDQKG 328

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
              ++   A +++   +   +  ++     G M  ++      M+  V  A + IG ++ 
Sbjct: 329 FLETLGLLAESYVTAFVAGPLFIIIM----GIMMTVMGSGSILMVYAVIYAVLPIGSVMF 384

Query: 180 RLMINF 185
            +MI+ 
Sbjct: 385 VVMISI 390


>gi|20094142|ref|NP_613989.1| hypothetical protein MK0705 [Methanopyrus kandleri AV19]
 gi|19887149|gb|AAM01919.1| Predicted membrane protein [Methanopyrus kandleri AV19]
          Length = 325

 Score = 69.0 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 73/185 (39%), Gaps = 15/185 (8%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R     ++ P+AL  +V  +RAGL + + +  +       +  EFR V+     G +  E
Sbjct: 102 RIKDIEENLPDALRQMVEELRAGLSIFETIRNVAESDYGELSREFRIVVRDMDTGKTFEE 161

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +I  M   +  + ++    +    S  GG L++ L  +   +R+ + ++ + +A++    
Sbjct: 162 AILDMAERVNSELLTRAVRLTVRISMSGGALADVLEAVENDIREVRRIELERKAITTMPC 221

Query: 128 ASAWIIGSL----------PFCVSTLVYFTSPGY-MNVLI---NDPRGHMLLGVAAAF-M 172
            +  + G +                ++    P Y M  +     DP     L +     M
Sbjct: 222 LALALGGLISGLPVGVSIGAVIGVAMMERMGPTYAMLPMYLQAKDPLASYPLVLGLLSGM 281

Query: 173 LIGIM 177
            IGI+
Sbjct: 282 AIGII 286


>gi|18977365|ref|NP_578722.1| hypothetical protein PF0993 [Pyrococcus furiosus DSM 3638]
 gi|18893046|gb|AAL81117.1| hypothetical protein PF0993 [Pyrococcus furiosus DSM 3638]
          Length = 355

 Score = 69.0 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 74/180 (41%), Gaps = 3/180 (1%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R A+     P  L  I   + AG+ +++A   +       +  EF  +++  H G S 
Sbjct: 173 RRRVAEVEKALPYVLRHIASLLSAGIGIAEAFVSVAKADYGVISEEFYLIVQDMHKGASF 232

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++S+    M  + V+  +  I    + GGNL++ L  ++        +K       + 
Sbjct: 233 EDALSKFEMKMASENVTRVTKQILRAIKFGGNLADILYKMADEFAFEYRLKLMEYVQKIN 292

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMN-VLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
             +  ++  S+      +V   +   ++  L+    G + + + A  ML   ++M  MI 
Sbjct: 293 GLSFVYMFLSVIMPTLFIVVILAGSILSRTLVISIPGLVAIMLFAFPML--SLIMITMIK 350


>gi|332710092|ref|ZP_08430045.1| type II secretory pathway, component PulF [Lyngbya majuscula 3L]
 gi|332351050|gb|EGJ30637.1| type II secretory pathway, component PulF [Lyngbya majuscula 3L]
          Length = 405

 Score = 69.0 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 59/170 (34%), Gaps = 6/170 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                   V AG+ +   + V+  Q S+  ++     +      G +LS+++ +      
Sbjct: 70  FSRQFAAMVNAGVAIVRCLGVLGEQCSNPKLKKALMNISAEVQQGTNLSDAMRKHPDC-- 127

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    ++GG L E L  L+++L D   ++ ++++         ++   + 
Sbjct: 128 ---FDNLYVSMVQAGEVGGVLDEVLNRLAKLLEDMNRLQNQIKSAMAYPSVVGFLALLVF 184

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
             ++  +     G    L  +        +  + +L    V+  +    V
Sbjct: 185 LAMTMFLIPIFAGIFQDLGTELPALTKFMLWLSGILRSWKVLIPIAVIIV 234



 Score = 38.2 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 12/134 (8%), Positives = 41/134 (30%), Gaps = 7/134 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
              +     R+G+P+ +++ ++   + +  + +           G  +S ++ R      
Sbjct: 274 FCRVFGSLTRSGVPILNSLDIVRDTAGNQVISNAINSAKNEIQQGGMISLALQR------ 327

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +  +    +  G L   +  ++    D      K     +E      + G + 
Sbjct: 328 ENIFPPLAIQMISIGEETGELDSMVMKVADFYEDEVEQAVKALTSILEPIMIVVLGGMVG 387

Query: 138 FCVSTLVYFTSPGY 151
             + ++       +
Sbjct: 388 VILISMYLPMFKVF 401


>gi|291526237|emb|CBK91824.1| hypothetical protein EUR_28790 [Eubacterium rectale DSM 17629]
          Length = 247

 Score = 69.0 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 71/189 (37%), Gaps = 6/189 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRVIET 58
           ++++  K  ++F N L ++  ++ AG  V +A      +          + SE + +   
Sbjct: 57  VRRQKEKLNEEFMNVLKVLSSNMLAGYSVENAWQEAEKEMELMYGNDSLMLSEIQEMNRQ 116

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +  +    +S       L+++  FS + S   + GG   + + + +  +  + +   +
Sbjct: 117 IKMNQTFEAVLSEFAHRSGLEDIVNFSDIFSFAKRSGGRFVDIIESTTYRMWTKYDTNRQ 176

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           ++      +     +  +P  +   +  +S  YM+ L  +  G + +          I +
Sbjct: 177 IEVAVSAKRLEQKTMNYIPIFLLAFLKLSSRDYMSALYGNLIGVIFMSTCLLAYAGAIKL 236

Query: 179 MRLMINFDV 187
            +  +   +
Sbjct: 237 AKKFLQVGI 245


>gi|283778864|ref|YP_003369619.1| type II secretion system protein [Pirellula staleyi DSM 6068]
 gi|283437317|gb|ADB15759.1| type II secretion system protein [Pirellula staleyi DSM 6068]
          Length = 361

 Score = 69.0 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 64/153 (41%), Gaps = 3/153 (1%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHL 61
              +KR  +  +   + LD++   +  G+P+S ++  +    ++         +++ Q  
Sbjct: 155 FRRRKRLTEINNGLADMLDMLGMCLSGGMPLSASLDHVAKNLTNYPALADELLIMKRQAE 214

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
             SL  +++     +   EV   ++++S   QLG ++S  L + +   R  +   A +QA
Sbjct: 215 VSSLKHALADFANRLDTPEVRQVASLLSRGDQLGSSISRNLLDQADHFRTARRQMATMQA 274

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
                  +  ++      V  L+   SP +M +
Sbjct: 275 NRTPVFLTFPLMFCFAPAVLILL--MSPSFMQL 305


>gi|328950485|ref|YP_004367820.1| Type II secretion system F domain protein [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450809|gb|AEB11710.1| Type II secretion system F domain protein [Marinithermus
           hydrothermalis DSM 14884]
          Length = 406

 Score = 69.0 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/171 (11%), Positives = 56/171 (32%), Gaps = 7/171 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72
            D       +   + AGLP+  A+A++  Q+ +       + +      G   S+++ + 
Sbjct: 65  KDVAIFSRQLATMLSAGLPIVQALAILERQAENKKFKGILKEIRTDVEGGEPFSDALKKH 124

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    +     +    +  G L   L  L+  L     ++ K+++           
Sbjct: 125 SA------FTRLYINLVRAGETSGTLDLVLERLATFLEKELELRGKIRSAMTYPAIVLVF 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
              + + +   +       +  L ++        +A + +L     + +++
Sbjct: 179 AIGVTYFLLAGIVPQFAQILTDLGSELPVLTRFLIAVSDLLRAYTWVFVLL 229


>gi|116328307|ref|YP_798027.1| Type II secretory pathway component, protein F [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116331033|ref|YP_800751.1| Type II secretory pathway component, protein F [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116121051|gb|ABJ79094.1| Type II secretory pathway component, protein F [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116124722|gb|ABJ75993.1| Type II secretory pathway component, protein F [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 408

 Score = 69.0 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 6/168 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
             +       +   + AG+P+  +++ IV Q+ +   R     +      G SLSE++ +
Sbjct: 66  RKEVGLFSRQLATLLGAGIPLDKSLSSIVEQTENQNFRKVLTGMQANITEGSSLSEAMKK 125

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P Q        +    +  G+    L  L+ +      +KAKVQ   +       
Sbjct: 126 HPDVFPSQ-----FPSLVAVGEKTGDYEATLTRLAELEEKSSELKAKVQVAMVYPFIMGS 180

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   + T+V                    + +  + +LIG   +
Sbjct: 181 LSIFVTIFLLTVVIPQIQELFLQFDAKLPLITRIVIGVSDILIGFWWL 228


>gi|205374338|ref|ZP_03227136.1| hypothetical protein Bcoam_14529 [Bacillus coahuilensis m4-4]
          Length = 403

 Score = 69.0 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 56/179 (31%), Gaps = 21/179 (11%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            L      + AG+ V DA  ++  Q+   P+R     V +    G  +S+++S+      
Sbjct: 67  FLRQFATLLEAGVTVVDATKILSEQTESKPLRKALIEVEKEIRDGNPISDALSQ-----H 121

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +        +    +  G+L E L  L+     +   K K+ +          I   + 
Sbjct: 122 KKIFEPMFVNMMRAGEATGSLDETLNMLAVHYEKQYQTKQKIVSALAYPAVVGLIAIGVV 181

Query: 138 FCVSTLVYFTSPGYMNVLINDPRG---------------HMLLGVAAAFMLIGIMVMRL 181
             +   V  T  G  +    D                    L+      + IG + +R 
Sbjct: 182 IFLLVAVVPTFVGMFDDFGGDLPAITKFVIGSSEWMQKYWYLVVAFMILLAIGFVFLRQ 240



 Score = 38.2 bits (87), Expect = 0.62,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 37/136 (27%), Gaps = 5/136 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                  +   V + +P+  A+++      +       RV+    L  SL    S     
Sbjct: 267 LARMTRTMSSLVSSSVPILQAISICEKVVEN---EVVSRVLAQSRL--SLERGTSFTDPM 321

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                     T +    +  G+L   L  ++                 +E      +   
Sbjct: 322 RKHWAFPPLVTQMIAIGEETGSLDAMLGKVADFYEKEVEAGTDRLKSLIEPLMIVVLAAL 381

Query: 136 LPFCVSTLVYFTSPGY 151
           +   VS+++      +
Sbjct: 382 VGTIVSSILVPMFEVF 397


>gi|17545369|ref|NP_518771.1| tight adherence TadC-related transmembrane protein [Ralstonia
           solanacearum GMI1000]
 gi|17427661|emb|CAD14180.1| probable pilus assembly tadc transmembrane protein [Ralstonia
           solanacearum GMI1000]
          Length = 315

 Score = 69.0 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 74/164 (45%), Gaps = 3/164 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   IK R  +  + FP++LD+I+  V AGL +  A+  +V         +  E+  +  
Sbjct: 151 LSLKIKYRQREIFESFPDSLDLIMVCVEAGLSLDAAILRVVDDMRTARPVMAEEYELLTL 210

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GLS  +++  +     + +VS    ++    + G +++++L   S +LR +++M A
Sbjct: 211 ELRAGLSREKALRNLAARTGVDDVSMLVAMLIQADRFGTSVADSLRVHSDMLRTKRHMLA 270

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           + +A  +  K    +I  +   +  ++   +   M   +  P G
Sbjct: 271 EERAAKIGTKVLFPLIFCIFPSLYVVLLGPAALQMIAALGAPGG 314


>gi|313126950|ref|YP_004037220.1| archaeal flagella assembly protein j [Halogeometricum borinquense
           DSM 11551]
 gi|312293315|gb|ADQ67775.1| archaeal flagella assembly protein J [Halogeometricum borinquense
           DSM 11551]
          Length = 719

 Score = 69.0 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L K+R      + P+ LD +     AG+ V  ++  +      P+  E RR       G 
Sbjct: 490 LRKRRLKAIEREMPDFLDRMASVNEAGVTVVKSLHRLAQSDLGPISEELRRTWRDIQWGA 549

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           SL  ++    R   +  VS   T+I       G ++  L   +   +D + +  + +   
Sbjct: 550 SLRNALRGFDRRAQVPMVSRAVTLIMNAVAASGEVAPVLRIAANEAQDSRRLLRERRQEM 609

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTS 148
           M      +I   +   +   +    
Sbjct: 610 MTYLVVIYISFFVFLGIVVALTLAF 634



 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 55/181 (30%), Gaps = 4/181 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIET 58
           +    + R  +     P  +  I    R+G+P    +A +            EF   +  
Sbjct: 158 LDQRARARRVQIDAALPQTIAFIYALSRSGMPFQKVLATLTENQHVYGEAAREFGVAVND 217

Query: 59  QHLGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                  L  ++ RM    P Q +  F+  ++     G +LS  L       +     + 
Sbjct: 218 VQTFGTDLPTALRRMAERTPSQRLDDFTENLTSVLTSGQSLSAFLHEQYDRFQAESEAQQ 277

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +     +   A  ++   +   +  +      G +      P   +++ +      +  +
Sbjct: 278 QQYLELLATFAEVYVTVLVAGPLFLITILVVVGLVMQ-DTLPLLRVIIYLGLPLASVAFV 336

Query: 178 V 178
           V
Sbjct: 337 V 337


>gi|227327076|ref|ZP_03831100.1| type IV pilin biogenesis protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 401

 Score = 69.0 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 63/180 (35%), Gaps = 17/180 (9%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
            +     +  +   ++AGLP+ +A+ ++  Q      R   R V      G S SE++  
Sbjct: 58  REQLGELIKQLAALLQAGLPLLEALKLVSEQHERPGWRCVLRDVRTHVAQGNSFSEALQE 117

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P+         +    +L G L E    L++    +  ++ KV           +
Sbjct: 118 YPHIFPV-----LYRSLIAVGELTGKLDECCLQLAQQQEKQSRLQQKVIKALRYP---CF 169

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHM---LLGVAAAFM---LIGIMVMRLMI 183
           ++         ++    P +  +    + P       LL +A        IG++V+  +I
Sbjct: 170 VLAIAIVVSMMMLTLVLPEFATLYSSFDTPLPWFTRQLLNLAGIITDYGFIGLLVLSGLI 229


>gi|291333378|gb|ADD93083.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S05-C205]
          Length = 529

 Score = 69.0 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 52/140 (37%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
             +  + FP+ L  +    + GL ++ A+  +       +  E +++ +    G+  S+ 
Sbjct: 277 KNEVEEKFPDFLRDLAEYWKGGLSMTVAIQTLATSEYGALNDEVKKMSDQLSWGIKFSDV 336

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           I +    +    V     +I+   + GG +S+ L   +   R+ K ++ + +       A
Sbjct: 337 IKQFADRVGTPLVQRAIALIAEADRAGGKISDILVTAANDSRELKFLEGERKRAIGSYIA 396

Query: 129 SAWIIGSLPFCVSTLVYFTS 148
             W    +   V   +    
Sbjct: 397 VIWTSYFVFLGVIVTLAVVF 416


>gi|209522190|ref|ZP_03270831.1| general secretion pathway protein F [Burkholderia sp. H160]
 gi|209497381|gb|EDZ97595.1| general secretion pathway protein F [Burkholderia sp. H160]
          Length = 405

 Score = 69.0 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 59/183 (32%), Gaps = 12/183 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +   + +R              +   + AGLP+ +A+AV+  QS  D +R     +    
Sbjct: 59  LGRRLSQREQAI------LTRQLASLLIAGLPLDEALAVLTEQSERDYIRELMAAIRAEV 112

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G SL+ ++ +  +     +       +    +  G L   L+ L+  +  R  +K K+
Sbjct: 113 LGGHSLANALQQHPK-----DFPEIYRALVAAGEHTGKLGLVLSRLADYIEQRNALKQKI 167

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
                       I   +   + + V                   ++ +A +  +      
Sbjct: 168 VLAFTYPTIVTIIAFGIVTFLLSYVVPQVVNVFASTKQQLPFLTVVMMALSGFVRHWWWA 227

Query: 180 RLM 182
            L+
Sbjct: 228 MLI 230



 Score = 38.2 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       S+    E     I     G SLS ++     + P
Sbjct: 274 FASTLGILTAAGVPILRALQAAAETLSNNAMRENIDDAIVRVREGTSLSRALGNTKTFPP 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G+++  L   +         +       +E      + G + 
Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAADGEARELERRTMFLTSLLEPLLILAMGGVVL 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 VIVLAVMLPI 397


>gi|261409011|ref|YP_003245252.1| Type II secretion system F domain-containing protein [Paenibacillus
           sp. Y412MC10]
 gi|261285474|gb|ACX67445.1| Type II secretion system F domain protein [Paenibacillus sp.
           Y412MC10]
          Length = 285

 Score = 69.0 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 76/183 (41%), Gaps = 8/183 (4%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFRRVIETQHLGLS 64
               F  AL  +  S+ AG  V +     V          S  +  E + ++     G  
Sbjct: 104 LNLHFKQALYSLSSSLSAGRSVENGFRDAVQDLLLLDPGGSSDLIFELKVIVSRLEYGEP 163

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++    R   +++++ F+ V S   + GG+L E +   S ++ ++ +++ ++  +  
Sbjct: 164 IEVALQDFARRAGMEDLTNFADVFSTCKRTGGDLVEVVRRTSSVIGEKLDIQQEISVMIA 223

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + +  +  + + PF +   +  TSP YM  +     G M+   A A +    + +  M+N
Sbjct: 224 QKRFESKALLAAPFLLLLFMNMTSPDYMEPMY-SGSGFMISTFALAALGGCFLWITKMMN 282

Query: 185 FDV 187
             V
Sbjct: 283 IKV 285


>gi|317403494|gb|EFV83999.1| hypothetical protein HMPREF0005_03141 [Achromobacter xylosoxidans
           C54]
          Length = 303

 Score = 69.0 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 72/168 (42%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
           +   P  LD IVR V  G  ++ A       + +P+R               L  ++ ++
Sbjct: 136 VSQLPAFLDNIVRLVTIGNSMAAAFQTAAASTDEPLREVVETAAALSRSAKELDAALVQV 195

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R   ++E+   + V+SV  + GG   + L  ++  +RD    +A++ A S E + SAWI
Sbjct: 196 SRQYDMKELYMVAAVVSVALRFGGRSDQVLERMAAFMRDIGQARAELSASSAEIRLSAWI 255

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           +  LP  ++  +   +      L  DP G  +L  A    + G  ++ 
Sbjct: 256 LALLPLGIAGFIMVANNDLFMGLWVDPLGFKMLLTAVCLQVAGSYILY 303


>gi|223940083|ref|ZP_03631947.1| type II secretion system protein [bacterium Ellin514]
 gi|223891268|gb|EEF57765.1| type II secretion system protein [bacterium Ellin514]
          Length = 403

 Score = 69.0 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 51/143 (35%), Gaps = 6/143 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72
            D       +   + AGL +  ++  +  Q+++ V     + V      G S SE++ + 
Sbjct: 61  ADLVIFTRQLATMLDAGLAMVQSLQALAEQTTNKVMRDVIKDVTARVEAGDSFSEALVKH 120

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +       +     +    + GG LSE LA L+  L +   ++ KV++  M       +
Sbjct: 121 PK-----VFNRLYVCMVGAGEKGGLLSEILARLATYLENAARLRRKVKSAMMYPTVVTCV 175

Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155
             S+   +   V           
Sbjct: 176 AISITIFLMVKVVPVFGEIFESF 198


>gi|85712727|ref|ZP_01043772.1| Type II secretory pathway, component PulF [Idiomarina baltica
           OS145]
 gi|85693459|gb|EAQ31412.1| Type II secretory pathway, component PulF [Idiomarina baltica
           OS145]
          Length = 408

 Score = 69.0 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/184 (11%), Positives = 56/184 (30%), Gaps = 8/184 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +    +R      D       +   V + LP+   +  +  QS  P   +    +     
Sbjct: 58  RWRRVRRVKA--QDLALITRQLSTLVNSALPIEQCLLAVADQSEKPRMKQLLMAVR---- 111

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
              +                    T +    +  G+L + L  L+     R++MK+++  
Sbjct: 112 SKVVEGYGLAEAMAEYPGVFDSLYTAMVAAGEKSGHLDQVLDELADYTEQRQHMKSQLTQ 171

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVM 179
             +       +  S+   +   +        + L     P    ++G++      G+ ++
Sbjct: 172 ALVYPVMLTLVAISIVIFLLVSIVPQIVHNFSTLGQTLPPTTQFMIGLSEFLQNWGLFIL 231

Query: 180 RLMI 183
             ++
Sbjct: 232 AGIV 235


>gi|151066|gb|AAA25733.1| pilin biogenesis protein (pilC) [Pseudomonas aeruginosa]
          Length = 406

 Score = 69.0 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/174 (10%), Positives = 51/174 (29%), Gaps = 7/174 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   + AG+P+  +  +I        +R     + +    G SL+ S+ +  
Sbjct: 67  DIALFTRQMATMMGAGVPLLQSFDIIGEGFDNPNMRKLVDEIKQEVSSGNSLANSLRKKP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           +             +    +  G L   L  ++      +++KAK++       A   + 
Sbjct: 127 Q-----YFDELYCNLVDAGEQSGALENLLDRVATYKEKTESLKAKIKKAMTYPIAVIIVA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
             +   +   V             +      + V      +      +++   +
Sbjct: 182 LIVSAILLIKVVPQFQSVFEGFGAELPAFTQMIVNL-SEFMQEWWFFIILAIAI 234



 Score = 38.2 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 45/129 (34%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +  +  AG+P+ DA+  + G + + V      ++ +    G+ L+ S+          
Sbjct: 277 RTLSTTFAAGVPLVDALDSVSGATGNIVFKNAVSKIKQDVSTGMQLNFSMRTTS------ 330

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +  ++   +  G+L E L+ ++    +  +         ME    A +   +   
Sbjct: 331 VFPNMAIQMTAIGEESGSLDEMLSKVASYYEEEVDNAVDNLTTLMEPMIMAVLGVLVGGL 390

Query: 140 VSTLVYFTS 148
           +  +     
Sbjct: 391 IVAMYLPIF 399


>gi|302872319|ref|YP_003840955.1| Type II secretion system F domain [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302575178|gb|ADL42969.1| Type II secretion system F domain [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 403

 Score = 69.0 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 49/149 (32%), Gaps = 9/149 (6%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLS 66
           R    + D           + AG+P+  A+ VI  Q            + +    G  LS
Sbjct: 57  RKKIPIKDLAVFCRQFATMLMAGIPMVSALDVIAEQFKGRYFGKVLEDIHKKVQSGSMLS 116

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +++      P          +    ++ G++ +AL  ++        ++ K+    +  
Sbjct: 117 RALAEKAECFP-----TILINMIEAGEMSGSVDQALDRMATHFEKELKLRQKIINALIYP 171

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                +I      +  ++ F  P ++ + 
Sbjct: 172 A---IVILVAIGVLIIMLTFVVPTFVGIF 197



 Score = 34.7 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+ +  A+       ++  V  +F  VIE    G  LS  I+ +     
Sbjct: 271 FTRTLGTMTAAGVSIVIALETTKNVMTNVFVEKKFEEVIERVQKGEGLSYPIADVG---- 326

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                    ++    +  GNL   L   +    +    +        E      +   + 
Sbjct: 327 --IFPRLVEIMIRTGEESGNLEYMLNKAADYYENEVENQVTRLTSVFEPIMIVLLAIMVG 384

Query: 138 FCVSTLVYFTS 148
           F +++++    
Sbjct: 385 FLLASIILPIF 395


>gi|257057541|ref|YP_003135373.1| Flp pilus assembly protein TadB [Saccharomonospora viridis DSM
           43017]
 gi|256587413|gb|ACU98546.1| Flp pilus assembly protein TadB [Saccharomonospora viridis DSM
           43017]
          Length = 282

 Score = 69.0 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 61/174 (35%), Gaps = 5/174 (2%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           D  + L  +V  +RAG     AV  +  ++  P+    R +  +       +        
Sbjct: 104 DLASLLRGVVTELRAGAHPVTAVENVAREAPRPLADRLRGLAASARFSGVPTAEPEVRAA 163

Query: 75  YMPLQEVS-----FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
             P  E         +T  ++ ++ G  L++    + R +        ++ A     +A 
Sbjct: 164 CGPGMEHVDRIFGRLATSWALSARHGIPLADVFDAVHRDMETTARSARQLDARLAGPRAG 223

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           A ++  LP     L        + VL+    G +L  V AA ++ G+     M 
Sbjct: 224 AAVLAFLPVAGLVLGEAMGAAPIPVLMGTSVGSVLFVVGAALLVAGVAWTSSMT 277


>gi|319424901|gb|ADV52975.1| MSHA biogenesis protein, MshG [Shewanella putrefaciens 200]
          Length = 406

 Score = 69.0 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/165 (11%), Positives = 52/165 (31%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
           D+       +    R+G+P+  A+A +   +    ++     + E    G  LS ++++ 
Sbjct: 64  DELQIFTRQMYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSAMNQH 123

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L +A   LS  +   +  + +++A           
Sbjct: 124 PE-----VFDSLFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRIKAAMRYPILVLIA 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           I      ++ +V        +    D      + +  + + +   
Sbjct: 179 ITIAMVILNIMVIPKFAEMFSRFGADLPWATKVLIGTSNLFVNYW 223



 Score = 40.1 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/135 (7%), Positives = 34/135 (25%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         + AG+P++ A++++     +              +   +    S +
Sbjct: 266 RSTLSRYCRSFSMMLSAGVPMTQALSLVADAVDNAYMH-----DRIVGMRRGIESGDSVL 320

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 Q  +     +    +  G + + L + +       +   K     +E      +
Sbjct: 321 RVSNQSQLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGIV 380

Query: 133 IGSLPFCVSTLVYFT 147
              +      +    
Sbjct: 381 AVIVLVLALGIYLPM 395


>gi|262165914|ref|ZP_06033651.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio mimicus VM223]
 gi|262025630|gb|EEY44298.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio mimicus VM223]
          Length = 314

 Score = 69.0 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 68/157 (43%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + H +K+R        P+ALD++V    +GL  + A+  +  +   S      E   V  
Sbjct: 155 LHHFVKERQRTIRAGVPDALDLLVVCTESGLGFNAALRKVADELTISHPEFADELDTVCA 214

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ +  +   +V    L E+     ++S  S++GG+LS+ L + +   RD++N + 
Sbjct: 215 KIKAGVEMHTAFDELVARTGLTEIRGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEV 274

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +  A  +  K    ++  +  C    +    P  +++
Sbjct: 275 EEIAAKIPTKMIFPLLLFIWPC--FFIVAIGPALLSL 309


>gi|33867074|ref|NP_898632.1| TadB-like protein [Rhodococcus erythropolis]
 gi|33668908|gb|AAP73902.1| TadB-like protein [Rhodococcus erythropolis]
          Length = 295

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 60/171 (35%), Gaps = 3/171 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +     +  +   +  G  +  A+        + + +E  R+I+       + +++    
Sbjct: 98  NAMEEWVRNLSGVLAVGTGIEQAIIATHKAMPEALTTEISRLIQRLRTNTPIIDALRGFA 157

Query: 74  RYMPLQEVSFFSTVISVQS-QLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           +   +   G  L+  L  LSR + +    +  V+A    ++ +A  
Sbjct: 158 DDLDDATGDLIVGSLIQSAAIRGSGLTAVLDRLSRSVAEDVRNRRAVEAARKGSRTTARW 217

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           +  +    +  + F    YM      P G ++  V  A  +  ++ M+ +I
Sbjct: 218 VTIITIGFTVGL-FLFTDYMT-FYKTPAGQLIFLVQIAGFIACLLWMKKLI 266


>gi|289661858|ref|ZP_06483439.1| pilC, fimbrial assembly protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 341

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 56/173 (32%), Gaps = 6/173 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +++G+P+  ++ +I     +  ++    ++      G SL ESIS+ 
Sbjct: 1   KDIAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMIGQIRTDIEGGSSLYESISKH 60

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L  ++    + + +K K++           +
Sbjct: 61  PVQ-----FDELYRNLVRAGEGAGVLETVLETVASYKENIEALKGKIKKAMFYPAMVVAV 115

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              +   +   V             +     LL V A+  ++    + L++  
Sbjct: 116 AIIVSAILLIFVVPQFEEVFKSFGAELPAFTLLLVNASRFMVSYWWLMLVVAV 168



 Score = 37.4 bits (85), Expect = 0.81,   Method: Composition-based stats.
 Identities = 15/137 (10%), Positives = 48/137 (35%), Gaps = 7/137 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISR 71
                        + +AG+P+ +A+ ++ G + + +  E   R+ +   +G  ++ ++ +
Sbjct: 204 NSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEEAVFRMRDDVSVGYPVNMAMKQ 263

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +  +  +         ++   +  G L   L  ++    +  N      +  +E     +
Sbjct: 264 VNLFPHM------VIQMTAIGEEAGALDAMLFKVAEYFEEEVNNAVDALSSLLEPLIMVF 317

Query: 132 IIGSLPFCVSTLVYFTS 148
           I   +   V  +     
Sbjct: 318 IGTIVGGMVIGMYLPIF 334


>gi|308369182|ref|ZP_07666675.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
 gi|308378427|ref|ZP_07668749.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
 gi|308380757|ref|ZP_07669274.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
 gi|308406205|ref|ZP_07669540.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
 gi|308328418|gb|EFP17269.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
 gi|308352454|gb|EFP41305.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
 gi|308360493|gb|EFP49344.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
 gi|308364119|gb|EFP52970.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
          Length = 251

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 1/172 (0%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                AL+++V  +RAG     A ++   ++  PV    R V     LG  ++  +    
Sbjct: 76  QALEAALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAA 135

Query: 74  RYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           R   L       +    + S  G  ++  +    R + +R+   A+V A    A+ASA I
Sbjct: 136 RSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAI 195

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +  LP     L        ++ L+    G  LL V       G++    + +
Sbjct: 196 LAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITD 247


>gi|126176022|ref|YP_001052171.1| type II secretion system protein [Shewanella baltica OS155]
 gi|125999227|gb|ABN63302.1| type II secretion system protein [Shewanella baltica OS155]
          Length = 406

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/168 (10%), Positives = 53/168 (31%), Gaps = 6/168 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
           ++       +    R+G+P+  A+A +   +    ++     + E    G  LS S+++ 
Sbjct: 64  EELQIFTRQMYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSSMNQH 123

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L +A   LS  +   +  + ++++           
Sbjct: 124 PD-----VFDSLFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRIKSAMRYPMFVLIA 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           I      ++ +V        +    D      + +  + + +    + 
Sbjct: 179 IALAMVILNIMVIPKFAEMFSRFGADLPWATKVLIGTSNLFVNYWALM 226



 Score = 39.3 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 9/132 (6%), Positives = 36/132 (27%), Gaps = 5/132 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                      + AG+P++ A++++     +    +    +        +    S +   
Sbjct: 269 LARYCRSFSMMLSAGVPMTQALSLVADAVDNAYMHDKIVGMRR-----GIESGDSMLRVS 323

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
              +  +     +    +  G + + L + +       +   K     +E     ++   
Sbjct: 324 NQSKLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGFVAVI 383

Query: 136 LPFCVSTLVYFT 147
           +      +    
Sbjct: 384 VLVLALGIYLPM 395


>gi|291526747|emb|CBK92333.1| hypothetical protein ERE_01990 [Eubacterium rectale M104/1]
          Length = 247

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 71/189 (37%), Gaps = 6/189 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRVIET 58
           ++++  K  ++F N L ++  ++ AG  V +A      +          + SE + +   
Sbjct: 57  VRRQKEKLNEEFMNVLKVLSSNMLAGYSVENAWQEAEKEMELMYGNDSLMLSEIQEMNRQ 116

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +  +    +S       L+++  FS + S   + GG   + + + +  +  + +   +
Sbjct: 117 IKMNQTFEAVLSEFAHRSGLEDIVNFSDIFSFAKRSGGRFVDIIESTTYRMWTKYDTNRQ 176

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           ++      +     +  +P  +   +  +S  YM+ L  +  G + +          I +
Sbjct: 177 IEVAVSAKRLEQKTMNYIPIFLLAFLKLSSRDYMSALYGNLIGVIFMSTCLLAYAGAIKL 236

Query: 179 MRLMINFDV 187
            +  +   +
Sbjct: 237 AKKFLQVGI 245


>gi|254414459|ref|ZP_05028225.1| Bacterial type II secretion system protein F domain [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178689|gb|EDX73687.1| Bacterial type II secretion system protein F domain [Microcoleus
           chthonoplastes PCC 7420]
          Length = 406

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 52/162 (32%), Gaps = 6/162 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                   V AG+ +   + ++  Q ++  ++     +      G SLS+++        
Sbjct: 71  FSRQFAVMVNAGVAIVRCLGILSEQCANPKLKKSLTAISSEVQQGTSLSDAMREHPAC-- 128

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    ++GG L E L  L+++L D   ++ ++++              + 
Sbjct: 129 ---FDQLYVSMVQAGEVGGVLDEVLNRLAKLLEDMARLQNQIKSAMTYPLVVGGFAVLVF 185

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             ++  +     G    +           +  + +L     +
Sbjct: 186 LGMTIFLIPIFAGIFEEIGGTLPALTAFMLWLSGVLRSWYAL 227



 Score = 41.6 bits (96), Expect = 0.045,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 39/133 (29%), Gaps = 5/133 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
              +     R+G+P+ +A+ ++   S + V +      + +     L             
Sbjct: 275 FCRVFGTLTRSGVPILNALDIVRDTSGNQVIANAVEATKQEIQQGGLISV-----AMQNE 329

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           Q     +  +    +  G L   L  ++    D      K     +E      I G +  
Sbjct: 330 QVFPGLAIQMISVGEETGELDSMLMKVADFYEDEVEQTVKALTSILEPVMIIVIGGMVGT 389

Query: 139 CVSTLVYFTSPGY 151
            + ++       +
Sbjct: 390 ILVSMYLPMFKVF 402


>gi|304316732|ref|YP_003851877.1| type II secretion system F domain [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778234|gb|ADL68793.1| Type II secretion system F domain [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 404

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 58/180 (32%), Gaps = 11/180 (6%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSE 67
               + D           + AG+P+  ++A +  Q  +  ++     V E    G SLSE
Sbjct: 59  RKVKVKDIAVFCRQFAVLINAGIPIVTSLATMAEQVENKKLKKALSDVYEDVQKGKSLSE 118

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           S+ R     P+         +    ++ G L   L  ++       N+  K+++      
Sbjct: 119 SMRRHSDVFPM-----LLFNMIEAGEVSGTLDNVLNEMADHFEKENNLNQKIKSALAYPM 173

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML--LGVAAAFMLIGIMVMRLMINF 185
               +       V  LV    P ++++  N      L  L +      I       + + 
Sbjct: 174 ---IVSIVAILLVIFLVTNVLPTFVSMFKNAGAQLPLPTLILLGLSDSISHFWYVYLGDI 230



 Score = 39.7 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/133 (9%), Positives = 38/133 (28%), Gaps = 5/133 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+P+ +A++ +V +               + +    S +         +
Sbjct: 272 FTRTLATLISSGIPLIEALS-VVERVVGNSIVANGLKRAEEDIKRGNSLAEP----LKKM 326

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +        +    +  G+L   L   +       +         +E      +   + F
Sbjct: 327 KIFPPMVIQMVNVGEDSGSLDSILKKTADFYDSEVDTAVSQMTTLIEPLIIVVLALVVGF 386

Query: 139 CVSTLVYFTSPGY 151
            V ++V      Y
Sbjct: 387 IVVSIVMPMFQMY 399


>gi|89098959|ref|ZP_01171839.1| hypothetical protein B14911_06316 [Bacillus sp. NRRL B-14911]
 gi|89086363|gb|EAR65484.1| hypothetical protein B14911_06316 [Bacillus sp. NRRL B-14911]
          Length = 401

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 61/175 (34%), Gaps = 6/175 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
            DF   L      +RAG+ V DA  ++  Q+    ++     V +    G SLS++ ++ 
Sbjct: 62  QDFVIYLRQFATLLRAGVTVVDATGILSQQTESKALKKALAAVEQDLREGNSLSDAAAK- 120

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 +  +     +    + GGN+ + L  L+     +   K K+ +      A   I
Sbjct: 121 ----HKKVFTSMFVNMIKAGEAGGNMDDTLERLAVHYEKQHFTKQKIISALAYPIAVGII 176

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
             ++   +   V  T          +        + ++  +     + +++   V
Sbjct: 177 AVAVVIFLLVSVVPTFVEMFQDFGGELPAITQFVLNSSEFMQKYWWLVILMFVSV 231


>gi|302036148|ref|YP_003796470.1| type IV pilus biogenesis protein PilC [Candidatus Nitrospira
           defluvii]
 gi|300604212|emb|CBK40544.1| Type IV pilus biogenesis protein PilC [Candidatus Nitrospira
           defluvii]
          Length = 405

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 50/152 (32%), Gaps = 6/152 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71
             D           + AGLP+   + ++  QS + V  E    V  +   G + S+++ R
Sbjct: 62  DKDLVVFTRQFGTMINAGLPLIQCLDILSTQSENKVLRETVGDVKNSVEAGSTFSDALKR 121

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +             +    ++GG L   L  L++ +     +K ++++  +   A   
Sbjct: 122 HPK-----VFDDLYVNMIHAGEVGGLLDTILTRLAKHIEKAMKLKGQIKSAMVYPTAIVG 176

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
           +   +   +   V          +     G  
Sbjct: 177 VAVVIISVLMVWVIPVFAQMFTEMSGGKVGLP 208


>gi|299771789|ref|YP_003733815.1| pilin biogenesis protein [Acinetobacter sp. DR1]
 gi|298701877|gb|ADI92442.1| pilin biogenesis protein [Acinetobacter sp. DR1]
          Length = 408

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/177 (9%), Positives = 51/177 (28%), Gaps = 15/177 (8%)

Query: 1   MKHLIKKRTAKFL---------DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51
           ++++ +KR               D       +   ++AG+P+     ++     +P   E
Sbjct: 47  VRNIREKRKNILEGLFKKKVSTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMRE 106

Query: 52  FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
               +      G + + ++ +  ++            +    +  G L   L  ++    
Sbjct: 107 VVLGIKGEVEGGSTFASALRKYPQH-----FDKLFCSLVESGEQSGALETMLDRVAIYKE 161

Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
             + +K K++           +   +   +   V        +    D      + V
Sbjct: 162 KSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVV 218


>gi|296268208|ref|YP_003650840.1| type II secretion system protein [Thermobispora bispora DSM 43833]
 gi|296090995|gb|ADG86947.1| type II secretion system protein [Thermobispora bispora DSM 43833]
          Length = 263

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 62/167 (37%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                I   + AG    +A+   +     P  +    V+     G  ++ ++        
Sbjct: 84  ELCHGIHAELVAGRMPGEALVNAIAAVEPPDPAALTPVVAAVRDGGDVAAALLSAAPEEG 143

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            + +   +    V + +GG L+  +  L+  LR+ +  + +V A     +A+A ++ +LP
Sbjct: 144 GEGLVRLAACWRVSTSVGGGLAALVDRLAASLREAEAHRQEVAAQLAGPRATARMLAALP 203

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                +        +  L+  P GH  L +  A    G+   R + +
Sbjct: 204 LLGLLMATALGVSPLPFLLGSPAGHACLLIGLALDAAGVWWTRRLAD 250


>gi|325919049|ref|ZP_08181110.1| type II secretory pathway, component PulF [Xanthomonas gardneri
           ATCC 19865]
 gi|325550485|gb|EGD21278.1| type II secretory pathway, component PulF [Xanthomonas gardneri
           ATCC 19865]
          Length = 425

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/173 (12%), Positives = 56/173 (32%), Gaps = 6/173 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +++G+P+  A+ +I  GQ +  +R    ++      G SL E++S+ 
Sbjct: 85  KDISFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRKMVGQIRTDIEGGSSLHEAVSKH 144

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L  ++    + + +K K++           +
Sbjct: 145 PVQ-----FDELYRNLVKAGEGAGVLETVLDTVATYKENLEALKGKIKKALFYPAMVMAV 199

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              +   +   V             +      + V  +  ++    + L++  
Sbjct: 200 AILVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWLMLIVAV 252



 Score = 35.9 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 46/131 (35%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77
                  + +AG+P+ +A+ ++ G + + V      R+ E   +G  ++ ++ ++  +  
Sbjct: 294 FARTTAVTFKAGVPLVEALGIVAGATGNSVYEKAVIRMREDVSVGYPVNMAMKQVNLFPH 353

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         ++   +  G L   L  ++       N      +  +E     +I   + 
Sbjct: 354 M------VVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG 407

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 408 GMVIGMYLPIF 418


>gi|239908016|ref|YP_002954757.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
 gi|239797882|dbj|BAH76871.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
          Length = 281

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 61/148 (41%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   +K R        P+ALD++V  V AG+ +  A+  +  +       + +E R +  
Sbjct: 118 LDSRVKARQTAIQKSLPDALDLLVVCVEAGMGLDAAIYRVCQEMSLKDPILSAELRLLTL 177

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  E++  +   + L++V     ++      G ++++ L   +  +R ++   A
Sbjct: 178 ELRAGKARREALKNLSARIGLEDVGSLVAMLIQTDMFGTSIAQTLRVYADSMRTKRFQLA 237

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           +  A  +  K    +I  +   +  ++ 
Sbjct: 238 EELAAKLPVKLLMPLIFFIFPTLLIVIL 265


>gi|149188841|ref|ZP_01867131.1| hypothetical Flp pilus assembly protein TadC [Vibrio shilonii AK1]
 gi|148837261|gb|EDL54208.1| hypothetical Flp pilus assembly protein TadC [Vibrio shilonii AK1]
          Length = 283

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 66/152 (43%), Gaps = 4/152 (2%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL--GLSLSE 67
            K   + P  LDI+   V+ G+ +  +   +  + +        ++ +T        + +
Sbjct: 132 RKISRNLPYVLDIMSVCVQTGMTIEASFDYLHKELAAFDSDLSYQIKKTSDAGKIHGIEK 191

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +++ +   +P  EV  F   I    Q G +++  L++L+  +R  + +K + +   + AK
Sbjct: 192 ALNDLNNRLPAPEVQSFVLTIIQNLQYGTSVANILSDLAEDMRRIQLLKVEEKVGKLSAK 251

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159
            S  +I  + F +  L+   +PG M +   D 
Sbjct: 252 MSVPLILLIMFPIVILI--LAPGVMQLDFTDL 281


>gi|91774310|ref|YP_567002.1| type II secretion system protein [Methanococcoides burtonii DSM
           6242]
 gi|91713325|gb|ABE53252.1| type II secretion system protein F domain [Methanococcoides
           burtonii DSM 6242]
          Length = 647

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 58/160 (36%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
             +R     D+FP  L+ +     AG+ + DA+ ++       ++SE RR+ +    G  
Sbjct: 430 KARRIRSMEDEFPEFLNRLASINEAGILLIDAINMVAQTKIGVLQSEVRRMQKGLSWGQD 489

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           LS         +     S   T++   S+   ++   L   ++    ++N++ +      
Sbjct: 490 LSSVFMEFESRVKTTMNSRIITLLVKASESTSDIIGVLHIAAKDAELQQNLRKERSTEMA 549

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
                 +I  ++   +  ++       +    +   G  L
Sbjct: 550 VYLFIVYISFAVFLFIIYVLTAYFIPSIPNTTDMAAGMPL 589



 Score = 44.0 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 55/175 (31%), Gaps = 8/175 (4%)

Query: 8   RTAKFLDDFPNALDIIVRSVRA-GLPVSDAVAVIVGQSS--DPVRSEFRRVIETQHLG-L 63
           R +      P+ +  +    ++ G+ V DA   +   S        EF  ++       +
Sbjct: 122 RQSYIDQSLPHGVAYMYALTKSGGVTVHDAFRSLSEHSHVYGLAADEFGYIVRDMDYFGM 181

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +  +I           +  F   I      GG+L+  L + +         + K     
Sbjct: 182 DVLSAIRNCSSTTSSTNLKAFLDGILFVISSGGDLNSYLRSKTDQFHLDATKQQKTFLEM 241

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +   A A++   +   +  ++     G+M          +L  +    + +G + 
Sbjct: 242 LGVLAEAYVAVFVVGPIFMIIILVVFGFM----GSGSMPILYTLIYLLIPVGTLF 292


>gi|329946364|ref|ZP_08293931.1| bacterial type II secretion system protein F domain protein
           [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328527340|gb|EGF54338.1| bacterial type II secretion system protein F domain protein
           [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 283

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 66/173 (38%), Gaps = 3/173 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           + +P A+D +V  VRAG+ + +A+  +  +  + VR +FR              S+ R+ 
Sbjct: 105 EVWPEAVDTLVSGVRAGMSLPEALTNLGERGPEVVRPQFRAFASDYAATARFDSSLDRLK 164

Query: 74  RYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                         + +     G +L   L +LS++LR+    + +++A        A +
Sbjct: 165 ARFADPVADRIVEALRLAHEVGGTDLGTLLRSLSQMLREDMRTRGELEARQSWTVNGAKV 224

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             + P+ V  L+   +              ++L + A   +    +M  +   
Sbjct: 225 AVAAPWLVLALLSTRTQAAAAYATTAGA--VVLLIGAVVSVAAYRLMLRLGRL 275


>gi|258621455|ref|ZP_05716489.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573]
 gi|258627496|ref|ZP_05722277.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603]
 gi|262171240|ref|ZP_06038918.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio mimicus MB-451]
 gi|258580302|gb|EEW05270.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603]
 gi|258586843|gb|EEW11558.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573]
 gi|261892316|gb|EEY38302.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio mimicus MB-451]
          Length = 314

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 68/157 (43%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + H +K+R        P+ALD++V    +GL  + A+  +  +   S      E   V  
Sbjct: 155 LHHFVKERQRTIRAGVPDALDLLVVCTESGLGFNAALRKVADELAISHPEFADELDTVCA 214

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ +  +   +V    L E+     ++S  S++GG+LS+ L + +   RD++N + 
Sbjct: 215 KIKAGVEMHTAFDELVARTGLTEIRGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEV 274

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +  A  +  K    ++  +  C    +    P  +++
Sbjct: 275 EEIAAKIPTKMIFPLLLFIWPC--FFIVAIGPALLSL 309


>gi|114564899|ref|YP_752413.1| type II secretion system protein [Shewanella frigidimarina NCIMB
           400]
 gi|114336192|gb|ABI73574.1| type II secretion system protein [Shewanella frigidimarina NCIMB
           400]
          Length = 404

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/165 (10%), Positives = 53/165 (32%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
           ++       +    R+G+P+  A+A +   +  D ++     + E    G  LS ++++ 
Sbjct: 63  EELQIFSRQMYSLTRSGIPILRAIAGLSETTHSDRMKKALDDISEQLTSGRPLSSAMNQH 122

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L +A   LS  +   +  + +++A           
Sbjct: 123 PDI-----FDSLFVSMIHVGENTGKLEDAFIQLSGYIEREQETRRRIKAAMRYPMFVLIA 177

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           I      ++ +V        +    +      + +  + + +   
Sbjct: 178 ITIAMVILNIMVIPKFADMFSRFGAELPWATKILIGTSNLFVNFW 222



 Score = 38.6 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 12/135 (8%), Positives = 38/135 (28%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         + AG+P++ A++++     +    +    +        +    S +
Sbjct: 265 RSTLSRYCRCFSMMLSAGVPMTQALSLVADAVDNAYMHDKIVGMRR-----GIESGESML 319

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 Q  +     +    +  G + + L + +       +   K     +E    A++
Sbjct: 320 RVSNSSQLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIAFV 379

Query: 133 IGSLPFCVSTLVYFT 147
            G +      +    
Sbjct: 380 AGIVLILALGIYLPM 394


>gi|146296096|ref|YP_001179867.1| type II secretion system protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409672|gb|ABP66676.1| type II secretion system protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 403

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 58/179 (32%), Gaps = 6/179 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLS 66
           R    + D           + AG+P+  A+ VI  Q            + +    G  LS
Sbjct: 57  RKKIPIKDLAVFCRQFATMLMAGIPMVSALDVIAEQFKGRYFGKVLEDIHKKVQSGSMLS 116

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +++      P          +    ++ G++ +AL  ++        ++ K+    +  
Sbjct: 117 RALAEKAECFPP-----ILINMIEAGEMSGSVDQALDRMATHFEKELKLRQKIINALIYP 171

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
                +   +   + T V  T  G  + L  +        + ++  +    V+ +++  
Sbjct: 172 AIVILVAIGVLIIMLTFVVPTFVGIFSELNVELPATTRFIITSSNFMRNNFVLIVLVCI 230


>gi|15789974|ref|NP_279798.1| hypothetical protein VNG0822C [Halobacterium sp. NRC-1]
 gi|10580392|gb|AAG19278.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
          Length = 535

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/144 (11%), Positives = 44/144 (30%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            ++R      + P+ LD    +  AG+   ++    V      +  E  R       G  
Sbjct: 303 ARRRRKAIEAEVPDFLDRFASTNEAGMAAVESFGRTVDGDLGALTQELERTWADIQWGAR 362

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  +++R    +    VS    + +      GNL   L   +      + ++   +   +
Sbjct: 363 IEHALTRFRDRVNTPAVSRVVALTTNAMAASGNLGPVLRIAANEATASRRLERDRRNELL 422

Query: 125 EAKASAWIIGSLPFCVSTLVYFTS 148
                 ++   +   +   +    
Sbjct: 423 TYVVVIYVSFFVFIAIIVALDTIF 446


>gi|56461124|ref|YP_156405.1| Type II secretory pathway, component PulF [Idiomarina loihiensis
           L2TR]
 gi|56180134|gb|AAV82856.1| Type II secretory pathway, component PulF [Idiomarina loihiensis
           L2TR]
          Length = 408

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 57/178 (32%), Gaps = 8/178 (4%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSE 67
                 D       +   V + LP+  A+  +  Q+    ++     V      G  L+E
Sbjct: 63  RKVKAQDLALITRQLSTLVGSALPIEQALLAVADQTEKPRLKKLLMSVRSKVVEGYGLAE 122

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++S               T +    +  G+L   L  L+     R++MK+++    +   
Sbjct: 123 AMSEFP-----GVFDSLYTAMVAAGEKSGHLDTVLDELANYTEQRQHMKSQLTQALIYPL 177

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVMRLMI 183
               +   +   +   +        + +  D  P    ++ ++      G+ ++  + 
Sbjct: 178 MLTLVAIGIVVFLLVSIVPQIVDNFSTMGQDLPPTTLAMIAISEFLQNWGLWLLIGIA 235


>gi|297170478|gb|ADI21508.1| type II secretory pathway, component PulF [uncultured
           verrucomicrobium HF0070_15G23]
          Length = 414

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 57/170 (33%), Gaps = 12/170 (7%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAV-AVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D  N    +   ++AG+P++ A+ ++   +S          ++     G +LS ++   
Sbjct: 74  QDLANYTRQLANLLKAGMPLTSALHSMTSMESGGVHPLVSVSLLGDVKEGKNLSRAMKSH 133

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P          +    + GG+L E L  L+        ++ KV +  +      ++
Sbjct: 134 AEVFP-----AMYINMVRAGESGGSLVEVLERLADHYERFAEVRQKVISALVYPA---FV 185

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGIMVM 179
           IG     +   + +  P +M +         L   L    +        +
Sbjct: 186 IGLGFILIFVFMSYILPKFMKIFEGMNVELPLSTQLLQGLSNFFADFWWV 235



 Score = 35.1 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 44/133 (33%), Gaps = 5/133 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           F      +   +R G+PV +A+ +      + V                +++  +     
Sbjct: 279 FGQFARTLGALLRNGVPVLEALKITQDVVQNVVIQ-----QAIGRTIGGVTDGKTIAQPL 333

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                       +    +  G++  AL NL+    ++ N+  +V    +E     +I G 
Sbjct: 334 GKEGVFDKLMIDLIHIGEQTGDVPSALENLAETYDNQLNVNLRVVTTLIEPFLIVFIAGV 393

Query: 136 LPFCVSTLVYFTS 148
           + F +  ++    
Sbjct: 394 VGFMLVGVLQAMF 406


>gi|295837159|ref|ZP_06824092.1| integral membrane protein [Streptomyces sp. SPB74]
 gi|197699511|gb|EDY46444.1| integral membrane protein [Streptomyces sp. SPB74]
          Length = 291

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/184 (10%), Positives = 68/184 (36%), Gaps = 2/184 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             ++   + ++      + +  ++   + +  A+      ++  +R     +++      
Sbjct: 66  REERTQMRRVEALATWTESLRDTIAGAVGLEQAIPASARAAAPALRPHLEALVDRLRART 125

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQAL 122
            L +++  +   +           + + ++  G  L + L  L++  R+  +M+ +V A 
Sbjct: 126 PLPDALQLLADEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQ 185

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
               + S  I+ ++       +   +  +++   N P G ++L        +G   +R +
Sbjct: 186 RASTRRSVQIVVAVSVLFVLGLAVFNKDFVSP-YNSPVGQVVLAGVCGLFALGFWWLRKL 244

Query: 183 INFD 186
              +
Sbjct: 245 STIE 248


>gi|157373688|ref|YP_001472288.1| type II secretion system protein [Shewanella sediminis HAW-EB3]
 gi|157316062|gb|ABV35160.1| type II secretion system protein [Shewanella sediminis HAW-EB3]
          Length = 406

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/165 (11%), Positives = 49/165 (29%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
           D+       +    R+G+P+  A+A +   +    +R     + E    G  LS +    
Sbjct: 64  DELQIFSRQMYSLTRSGIPILRAIAGLSETTHSQRMRDALNDISEQLTSGRPLSSA---- 119

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L +A   L+  +   +  + +++A           
Sbjct: 120 -MNHHPDVFDALFVSMVHVGENTGKLEDAFIQLAGYIEREQETRRRIKAAMRYPIFVLIA 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           I      ++ +V        +    D      + +  + + +   
Sbjct: 179 IALAMVILNIMVIPKFAEMFSRFGADLPWATKVLIGTSNLFVNYW 223



 Score = 40.5 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/132 (8%), Positives = 36/132 (27%), Gaps = 5/132 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                      + AG+P++ A++++     +              +   +    S +   
Sbjct: 269 LSRYCRSFSMMLSAGVPMTQALSLVADAVDNAYMH-----DRIVGMRRGIESGDSMLRVS 323

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
              Q  +     +    +  G + + L + +       +   K     +E     ++ G 
Sbjct: 324 NQSQLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGFVAGI 383

Query: 136 LPFCVSTLVYFT 147
           +      +    
Sbjct: 384 VLILALGIYLPM 395


>gi|217971718|ref|YP_002356469.1| type II secretion system protein [Shewanella baltica OS223]
 gi|217496853|gb|ACK45046.1| type II secretion system protein [Shewanella baltica OS223]
          Length = 406

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/168 (10%), Positives = 53/168 (31%), Gaps = 6/168 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
           ++       +    R+G+P+  A+A +   +    ++     + E    G  LS S+++ 
Sbjct: 64  EELQIFTRQMYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSSMNQH 123

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L +A   LS  +   +  + ++++           
Sbjct: 124 PD-----VFDSLFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRIKSAMRYPMFVLIS 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           I      ++ +V        +    D      + +  + + +    + 
Sbjct: 179 IALAMVILNIMVIPKFAEMFSRFGADLPWATKVLIGTSNLFVNYWALM 226



 Score = 39.3 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 9/135 (6%), Positives = 36/135 (26%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         + AG+P++ A++++     +    +    +        +    S +
Sbjct: 266 RSTLARYCRSFSMMLSAGVPMTQALSLVADAVDNAYMHDKIVGMRR-----GIESGDSML 320

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 +  +     +    +  G + + L + +       +   K     +E     ++
Sbjct: 321 RVSNQSKLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGFV 380

Query: 133 IGSLPFCVSTLVYFT 147
              +      +    
Sbjct: 381 AVIVLVLALGIYLPM 395


>gi|167842403|ref|ZP_02469087.1| bacterial type II secretion system protein F domain [Burkholderia
           thailandensis MSMB43]
          Length = 244

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 61/146 (41%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +   + +R        P+ALD++V    AG  +S A+  +  +      P+  EF     
Sbjct: 84  LGFAVARRQKTIAAYLPDALDLLVICTNAGNSLSVAIRRVASELKTICPPLADEFSVCAN 143

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G   + +++ M   + L  +    T +    Q G  ++++L  LSR  R  + +  
Sbjct: 144 ELQIGGEPAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 203

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K +  ++  +   V+ +
Sbjct: 204 EEKAAKLAPKMTLPMMLFVMPTVALI 229


>gi|299069494|emb|CBJ40763.1| Type II secretion system protein [Ralstonia solanacearum CMR15]
          Length = 324

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 64/157 (40%), Gaps = 9/157 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           +      R  +  D+ P  +D++      GL +  ++ VI  +       +  EF R  +
Sbjct: 161 LARRKASRRHRLDDELPVMVDMLRLLQGVGLSIDQSLQVIANEFHGMLPVLADEFGRANQ 220

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G    +++ R+ R    +++    T+++   + GG + E L      L++ +  + 
Sbjct: 221 QFASGRPREQTLLRISRLFDNEDLKGLITLLTQVDRFGGAVQEPLRQFGLRLQENRRSRL 280

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           K +   +       +  ++   ++ L+    PG+M+V
Sbjct: 281 KERVGKL------TVKMTVVMVLTLLIITAGPGFMSV 311


>gi|302553401|ref|ZP_07305743.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
 gi|302471019|gb|EFL34112.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
          Length = 315

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/174 (10%), Positives = 62/174 (35%), Gaps = 2/174 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +   +  + +  ++   + +  A+      ++  +R     +++       L E++  + 
Sbjct: 107 EALASWTESLRDTIAGAVGLEQAIPASARAAAPVLRPHLDALVDRLRARTPLPEALQHLA 166

Query: 74  RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + + ++  G  L + L  L++  R+  +M+ +V A     + S  I
Sbjct: 167 DEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQRASTRRSVQI 226

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + ++       +   +  ++      P G  +L        +G   +R +   +
Sbjct: 227 VVAVSIAFVLGLSIFNRDFVEP-YGTPAGQAVLACVCGLFALGFWWLRKLSTIE 279


>gi|169797413|ref|YP_001715206.1| type 4 fimbrial assembly protein [Acinetobacter baumannii AYE]
 gi|184156664|ref|YP_001845003.1| Type II secretory pathway, component PulF [Acinetobacter baumannii
           ACICU]
 gi|213155773|ref|YP_002317818.1| pilin biogenesis protein [Acinetobacter baumannii AB0057]
 gi|260556305|ref|ZP_05828524.1| general secretion pathway protein F [Acinetobacter baumannii ATCC
           19606]
 gi|301345146|ref|ZP_07225887.1| pilin biogenesis protein [Acinetobacter baumannii AB056]
 gi|301510693|ref|ZP_07235930.1| pilin biogenesis protein [Acinetobacter baumannii AB058]
 gi|301594953|ref|ZP_07239961.1| pilin biogenesis protein [Acinetobacter baumannii AB059]
 gi|332873072|ref|ZP_08441029.1| type IV fimbrial assembly protein PilC [Acinetobacter baumannii
           6014059]
 gi|169150340|emb|CAM88237.1| type 4 fimbrial assembly protein [Acinetobacter baumannii AYE]
 gi|183208258|gb|ACC55656.1| Type II secretory pathway, component PulF [Acinetobacter baumannii
           ACICU]
 gi|193076177|gb|ABO10792.2| type 4 fimbrial assembly protein [Acinetobacter baumannii ATCC
           17978]
 gi|213054933|gb|ACJ39835.1| pilin biogenesis protein [Acinetobacter baumannii AB0057]
 gi|260410360|gb|EEX03659.1| general secretion pathway protein F [Acinetobacter baumannii ATCC
           19606]
 gi|322506551|gb|ADX02005.1| PulF [Acinetobacter baumannii 1656-2]
 gi|323516430|gb|ADX90811.1| Type II secretory pathway, component PulF [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332738584|gb|EGJ69454.1| type IV fimbrial assembly protein PilC [Acinetobacter baumannii
           6014059]
          Length = 408

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/177 (9%), Positives = 50/177 (28%), Gaps = 15/177 (8%)

Query: 1   MKHLIKKRTAKFL---------DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51
           ++++ +KR               D       +   ++AG+P+     ++     +P   E
Sbjct: 47  VRNIREKRKNILEGLFKKKVTTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMRE 106

Query: 52  FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
               +      G + + ++ +  ++            +    +  G L   L  ++    
Sbjct: 107 VVLGIKGEVEGGSTFASALRKYPQH-----FDNLFCSLVESGEQSGALETMLDRVAIYKE 161

Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
             + +K K++           +   +   +   V             D      + V
Sbjct: 162 KSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVV 218



 Score = 37.8 bits (86), Expect = 0.69,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 40/129 (31%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +  +  AG+P+ DA+    G +++ +      ++ E    G  L  ++    R     
Sbjct: 280 RTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVATGQQLQFAMRVSNR----- 334

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +  +    +  G L   L  ++    +  +         ME    A +   +   
Sbjct: 335 -FPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGL 393

Query: 140 VSTLVYFTS 148
           V  +     
Sbjct: 394 VIAMYLPIF 402


>gi|110833474|ref|YP_692333.1| type IV pilus assembly protein TapC [Alcanivorax borkumensis SK2]
 gi|110646585|emb|CAL16061.1| type IV pilus assembly protein TapC [Alcanivorax borkumensis SK2]
          Length = 410

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/196 (11%), Positives = 59/196 (30%), Gaps = 15/196 (7%)

Query: 2   KHLIKKR------TAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFR 53
           K + KKR        K    D       +   ++AG+P+  A  ++     +P       
Sbjct: 51  KKVAKKREINLGGKKKVTPMDIAIFTRQMATMMKAGVPLVQAFEIVADGLDNPAMKVVVM 110

Query: 54  RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
           ++      G + + ++                  +    +  G L   L  ++      +
Sbjct: 111 KLKTEVEGGNNFAGALRMHPLL-----FDDLYCSLVDAGEQSGALETMLDRVALYKEKSE 165

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAF 171
            +K K++       A   +   +   +   V  T          +       ++ ++   
Sbjct: 166 ALKQKIKKALKYPIAVICVAVIVTAILLIKVVPTFKELFEGFGAELPAFTQFVINLSEGL 225

Query: 172 MLIGIMVMRLMINFDV 187
               ++++  +I F +
Sbjct: 226 QSNFLIIILSLIGFSI 241



 Score = 37.0 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 41/138 (29%), Gaps = 7/138 (5%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESIS 70
           F          +  +  AG+P+ DA+    G + + + R    ++ E    G  L  ++ 
Sbjct: 272 FKATIARYARTLSTTFAAGVPLIDALDACAGATGNVIYRKAVLQIKEDVSTGQQLQFAMR 331

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
                         +  ++   +  G L   L  ++    D  +         ME    +
Sbjct: 332 STG------VFPSMALQMTAIGEESGALDAMLEKVAIYYEDEVDNAVDGLTSMMEPLIMS 385

Query: 131 WIIGSLPFCVSTLVYFTS 148
            +   +   +  +     
Sbjct: 386 VLGVLIGGLIIAMYLPIF 403


>gi|90414687|ref|ZP_01222658.1| putative general secretion pathway protein F [Photobacterium
           profundum 3TCK]
 gi|90324229|gb|EAS40804.1| putative general secretion pathway protein F [Photobacterium
           profundum 3TCK]
          Length = 410

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 60/172 (34%), Gaps = 11/172 (6%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66
           R     ++       +   V+AG+P+ + +  +  Q+    +R+    V      G +LS
Sbjct: 64  RRGISTNELSLVTRQLATLVQAGMPLEECLKAVGEQNEKPRLRNMLLAVRSRVVEGYTLS 123

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S++                 +    +  G+L   L  L+    +R+ M++K+Q   +  
Sbjct: 124 DSMAEYP-----HIFDQLFRAMVAAGEKSGHLDTVLNRLADYTENRQKMRSKLQQAMIYP 178

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                +       V+ L+    P  ++  +    G  L  +    +     V
Sbjct: 179 T---MLTLVAVAVVAFLLATVVPKIVDQFVQ--MGQKLPTITEVLLAASNFV 225


>gi|167628382|ref|YP_001678881.1| type ii secretion system protein, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167591122|gb|ABZ82870.1| type ii secretion system protein, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 415

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 60/179 (33%), Gaps = 6/179 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLS 66
           R +    D       +   V AG+ +  A+++++ QS +  +R     +      G +LS
Sbjct: 68  RRSVPAKDLAVFCRQLSTLVNAGVAIHSALSILIQQSRNAALRQALIDLSGDLQRGFTLS 127

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++ R  +  P          +    +LGG L E L  L+         + KV+A     
Sbjct: 128 QAVGRHPKVFP-----EVFVHMIEAGELGGVLEEVLQRLAGHFEKDNETRNKVKAALTYP 182

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
                I  +    +   V     G +  L  +        +  A ++        +  F
Sbjct: 183 AVVLLIGMAAVAFLLGFVIPRFAGVLGELGAELPALTKQMLELAELVKAYWWTSFIAAF 241



 Score = 36.3 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 37/130 (28%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   +R+G+P+  A+ V+   + +   S+            S+ +           
Sbjct: 282 FSRTLGTLIRSGVPMLQALEVVEKTAGNMAVSKGVMGTRE-----SIRKGQGLAEPLQKT 336

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G L   L  +S       +      +  +E     ++ G +  
Sbjct: 337 GIFPPMVVQMVAVGEETGALDTMLEKVSDYYEMEVDGVVTRLSTIIEPMMLVFLGGLVAL 396

Query: 139 CVSTLVYFTS 148
            V  ++    
Sbjct: 397 MVLAMLLPIF 406


>gi|262280753|ref|ZP_06058536.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202]
 gi|262257653|gb|EEY76388.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202]
          Length = 408

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/177 (9%), Positives = 51/177 (28%), Gaps = 15/177 (8%)

Query: 1   MKHLIKKRTAKFL---------DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51
           ++++ +KR               D       +   ++AG+P+     ++     +P   E
Sbjct: 47  VRNIREKRKNILEGLFKKKVSTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMRE 106

Query: 52  FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
               +      G + + ++ +  ++            +    +  G L   L  ++    
Sbjct: 107 VVLGIKGEVEGGSTFASALRKYPQH-----FDKLFCSLVESGEQSGALETMLDRVAIYKE 161

Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
             + +K K++           +   +   +   V        +    D      + V
Sbjct: 162 KSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVV 218



 Score = 37.8 bits (86), Expect = 0.77,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 38/128 (29%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +  +  AG+P+ DA+    G +++ +  +    I          +   R+    P   
Sbjct: 280 RTLATTFAAGVPLIDALESTAGATNNIIYEQAVMKIREDVATGQQLQFAMRVSNRFP--- 336

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
               +  +    +  G L   L  ++    +  +         ME    A +   +   V
Sbjct: 337 --SMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLV 394

Query: 141 STLVYFTS 148
             +     
Sbjct: 395 IAMYLPIF 402


>gi|149175458|ref|ZP_01854079.1| hypothetical protein PM8797T_18379 [Planctomyces maris DSM 8797]
 gi|148845726|gb|EDL60068.1| hypothetical protein PM8797T_18379 [Planctomyces maris DSM 8797]
          Length = 370

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 64/158 (40%), Gaps = 3/158 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR--RVIET 58
           +      R ++     P+ LD++   V  G+ V  A+  I+ + +    +     +++  
Sbjct: 192 VTSKASDRRSEIEQGIPDMLDMLNMCVSQGMTVPHALKKIISELAKVYPALAHELKIVIE 251

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           Q    + S+++S   + + + EV  F+ ++    Q+G N++ AL   S  +R+  + +A 
Sbjct: 252 QSSIGTFSQALSNFSKRIDVPEVHSFAALLIQTDQMGTNVTSALQEYSDNMRESLSQRAD 311

Query: 119 VQALSM-EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            +A           ++  +P     L+        +  
Sbjct: 312 EKANKATFKLLFPTVLCLMPAIYIFLLGPAIVELSDFF 349


>gi|313107171|ref|ZP_07793371.1| type 4 fimbrial biogenesis protein PilC [Pseudomonas aeruginosa
           39016]
 gi|310879873|gb|EFQ38467.1| type 4 fimbrial biogenesis protein PilC [Pseudomonas aeruginosa
           39016]
          Length = 406

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/170 (11%), Positives = 54/170 (31%), Gaps = 6/170 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   + AG+P+  +  +I        +R     + +    G SL+ S+ +  
Sbjct: 67  DIALFTRQMSTMMAAGVPLLQSFDIISEGFDNPNMRKLVEEIKQEVAGGNSLANSLRKKP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           +             +    +  G L   L  ++      + +KAK++       A   + 
Sbjct: 127 Q-----YFDSLYCNLVDAGEQSGALETLLDRVATYKEKTEALKAKIKKAMTYPIAVIVVA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             +   +   V             +     ++ +  + +L    ++ L++
Sbjct: 182 IIVSAILLIKVVPQFQSVFEGFGAELPAFTMMVINISNVLQEWWLLVLLM 231



 Score = 37.0 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 43/129 (33%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +  +  AG+P+ +A+  + G + + V      ++ +    G+ L+ S+          
Sbjct: 277 RTLSTTFAAGVPLVEALDSVSGATGNVVFRDAVGKIKQDVSTGMQLNFSMRT------TN 330

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +  ++   +  G L + LA ++       +         ME    A +   +   
Sbjct: 331 IFPSMAIQMTAIGEESGALDDMLAKVAGFYEQEVDNAVDNLTALMEPMIMAVLGVLVGGL 390

Query: 140 VSTLVYFTS 148
           +  +     
Sbjct: 391 IIAMYLPIF 399


>gi|229543673|ref|ZP_04432733.1| type II secretion system protein [Bacillus coagulans 36D1]
 gi|229328093|gb|EEN93768.1| type II secretion system protein [Bacillus coagulans 36D1]
          Length = 401

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 62/175 (35%), Gaps = 6/175 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            DF   L      ++AG+ V D+  ++  Q+S   ++     V E    G+ LS++ ++ 
Sbjct: 62  QDFVIFLRQFSTLLKAGVTVVDSTNILASQTSSKTLKKTLLAVEEDLRGGIPLSQAAAK- 120

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 +  +     +    + GGNL   L  L+     +   + KV++          +
Sbjct: 121 ----HKKVFTPMFINMVYAGEAGGNLDGTLERLATYYEKQHRTRQKVRSALTYPAFVGVM 176

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
              +   +   +  T    +            L ++A+  +     + ++I   V
Sbjct: 177 AIVVVIFMLVKIVPTFVSMLKNYKASLPAVTRLVLSASGFMQHYWWLVVLILIGV 231


>gi|328952510|ref|YP_004369844.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
           DSM 11109]
 gi|328452834|gb|AEB08663.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
           DSM 11109]
          Length = 312

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 65/158 (41%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           ++    +R  K   + P+ LD++   + AGL +  A+  +  +       +  E  +   
Sbjct: 150 LRRQASERRLKIWQELPDVLDLLNICIEAGLSLDSALYRVSRELRDIAPVLSRELAQYFL 209

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL   E + ++V    +  +S    V+   S+LG +++E+L   S  LR  +   A
Sbjct: 210 EIQSGLPRKEVLEKIVDRNQVNALSGVVNVLMQSSRLGTDIAESLKVYSVSLRTERMQAA 269

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + Q   +  K +  +   +   +  +V    P  + +L
Sbjct: 270 EEQGAKVSTKLTFPMTMLILPALLLVV--LGPAMIKML 305


>gi|153812903|ref|ZP_01965571.1| hypothetical protein RUMOBE_03310 [Ruminococcus obeum ATCC 29174]
 gi|149830981|gb|EDM86071.1| hypothetical protein RUMOBE_03310 [Ruminococcus obeum ATCC 29174]
          Length = 275

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 76/191 (39%), Gaps = 8/191 (4%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS------EFRRVI 56
            L  +R    L  F + L+ +  S   G     A     G  +D          E   ++
Sbjct: 87  FLKARRQKGLLIQFRDMLESLTASYSTGKNTQGAFEDAYGDLADIYGKKADIVHEIEMIV 146

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
              + G ++   +        L +V  F+T+  V S+ GGNL +A+ +  RI+ ++  M+
Sbjct: 147 NGIYNGQNIEALLKNFAERSHLDDVESFATIFEVSSRYGGNLKKAVGDTYRIINEKIEME 206

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            +++ L    K    I+  +P  +   +     G M+++ N P   +   +A A      
Sbjct: 207 MEIRTLLTANKNELNIMMLMPLIIMVTLSGM--GSMSIVQNTPLNVLTKVIALALFGTAY 264

Query: 177 MVMRLMINFDV 187
            + R +I+  +
Sbjct: 265 YIGRKIIDIKI 275


>gi|152999038|ref|YP_001364719.1| type II secretion system protein [Shewanella baltica OS185]
 gi|160873631|ref|YP_001552947.1| type II secretion system protein [Shewanella baltica OS195]
 gi|304411543|ref|ZP_07393156.1| Type II secretion system F domain protein [Shewanella baltica
           OS183]
 gi|307306681|ref|ZP_07586423.1| Type II secretion system F domain protein [Shewanella baltica
           BA175]
 gi|151363656|gb|ABS06656.1| type II secretion system protein [Shewanella baltica OS185]
 gi|160859153|gb|ABX47687.1| type II secretion system protein [Shewanella baltica OS195]
 gi|304350070|gb|EFM14475.1| Type II secretion system F domain protein [Shewanella baltica
           OS183]
 gi|306910649|gb|EFN41078.1| Type II secretion system F domain protein [Shewanella baltica
           BA175]
 gi|315265860|gb|ADT92713.1| Type II secretion system F domain [Shewanella baltica OS678]
          Length = 406

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/168 (10%), Positives = 53/168 (31%), Gaps = 6/168 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
           ++       +    R+G+P+  A+A +   +    ++     + E    G  LS S+++ 
Sbjct: 64  EELQIFTRQMYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSSMNQH 123

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L +A   LS  +   +  + ++++           
Sbjct: 124 PD-----VFDSLFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRIKSAMRYPMFVLIS 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           I      ++ +V        +    D      + +  + + +    + 
Sbjct: 179 IALAMVILNIMVIPKFAEMFSRFGADLPWATKVLIGTSNLFVNYWALM 226



 Score = 39.3 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 9/132 (6%), Positives = 36/132 (27%), Gaps = 5/132 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                      + AG+P++ A++++     +    +    +        +    S +   
Sbjct: 269 LARYCRSFSMMLSAGVPMTQALSLVADAVDNAYMHDKIVGMRR-----GIESGDSMLRVS 323

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
              +  +     +    +  G + + L + +       +   K     +E     ++   
Sbjct: 324 NQSKLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGFVAVI 383

Query: 136 LPFCVSTLVYFT 147
           +      +    
Sbjct: 384 VLVLALGIYLPM 395


>gi|288553597|ref|YP_003425532.1| competence or secretion-like protein [Bacillus pseudofirmus OF4]
 gi|288544757|gb|ADC48640.1| competence or secretion-like protein [Bacillus pseudofirmus OF4]
          Length = 402

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 59/168 (35%), Gaps = 6/168 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISR 71
             DF   L      ++AG+ V DA  ++  Q+ S  +++    V +    G   S++   
Sbjct: 62  SQDFVIYLRQFATLLKAGISVVDATVILREQTSSKKLKAALHDVEDELRAGNPFSQAAEN 121

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P          ++   +LGGNL + L  L+     +   K KV +         +
Sbjct: 122 QKKVFPP-----LFVNMAKAGELGGNLDDILERLASYYEKQHKTKQKVMSAMSYPIVVGF 176

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   + + V  T          +     +L + A  +   +  +
Sbjct: 177 VAIIIVIFLLSYVVPTFADMFASFNAELPMITVLVLQAGEVFSRLWWL 224


>gi|298675313|ref|YP_003727063.1| type II secretion system F domain-containing protein
           [Methanohalobium evestigatum Z-7303]
 gi|298288301|gb|ADI74267.1| Type II secretion system F domain protein [Methanohalobium
           evestigatum Z-7303]
          Length = 652

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 60/163 (36%), Gaps = 1/163 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L  KR ++  +  P     +     AG+ + DA+++        + +E  ++ E  + G 
Sbjct: 433 LRAKRISQIEEQIPEFFKKLASINEAGIMLMDAISMTAQSKVGIIHTEIGKMKEDINWGT 492

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           +L++++ +    +         T I   S+   +++  L   +     +K MK +     
Sbjct: 493 NLTQALKKFEYRVRTDLTRRIVTTIIKASESTNDVTSVLNIAANDAEVQKQMKNQRSTEM 552

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYM-NVLINDPRGHMLL 165
                  ++   +   +  ++       M + + +   G  ++
Sbjct: 553 YVYVFIIYMAFFVYLFIVYILTVHFLSSMPSTMGDSVAGMTMV 595


>gi|296157580|ref|ZP_06840415.1| general secretion pathway protein F [Burkholderia sp. Ch1-1]
 gi|295892352|gb|EFG72135.1| general secretion pathway protein F [Burkholderia sp. Ch1-1]
          Length = 405

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 59/183 (32%), Gaps = 12/183 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +   + +R              +   + AGLP+ +A++V+  QS  D +R     +    
Sbjct: 59  LGRRLSQREQAI------LTRQLASLLIAGLPLDEALSVLTEQSERDYIRELMASIRAEV 112

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G SL+ ++++  +     +       +    +  G L   L+ L+  +  R  +K K+
Sbjct: 113 LGGHSLANALTQHPK-----DFPEIYRALVAAGEHTGKLGLVLSRLADYIEQRNALKQKI 167

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
                       I   +   + + V                   +  +A +  +      
Sbjct: 168 VLAFTYPAIVTLIAFGIVTFLLSYVVPQVVNVFASTKQQLPFLTITMMALSGFVRNWWWA 227

Query: 180 RLM 182
            L+
Sbjct: 228 MLI 230



 Score = 38.6 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       S+    E     I     G SLS ++     + P
Sbjct: 274 FASTLGILTAAGVPILRALQAAAETLSNNAMRENIDDAIVRVREGTSLSRALGNTKTFPP 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G+++  L   +         +       +E      + G + 
Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAADGEARELERRTMFLTSLLEPLLILAMGGVVL 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 VIVLAVMLPI 397


>gi|254506088|ref|ZP_05118232.1| bipartite nuclear localization signal containing protein [Vibrio
           parahaemolyticus 16]
 gi|219550906|gb|EED27887.1| bipartite nuclear localization signal containing protein [Vibrio
           parahaemolyticus 16]
          Length = 248

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 64/157 (40%), Gaps = 4/157 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +    K R ++     P  LD++   V+ G+ +  A+  +  +     +     + +   
Sbjct: 91  LDGRGKARVSRVSGQLPYLLDLLAVCVQTGMTIESAMNYLSKEMVGFDKELAGLLKKTND 150

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +   + + +++  +   +P  E+  F   +    Q G ++   L  L+  +RD + +  +
Sbjct: 151 RARLVGMQKALDELYEDIPSSEMRSFVMTLKQSLQYGSSIYGVLTTLAGDIRDVQMLTLE 210

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            +   + AK S  +I  +   +  L+    PG + ++
Sbjct: 211 EKIGKLAAKMSVPLILFIMMPIVILIAA--PGILRMM 245


>gi|149917608|ref|ZP_01906105.1| general secretion pathway protein F [Plesiocystis pacifica SIR-1]
 gi|149821671|gb|EDM81069.1| general secretion pathway protein F [Plesiocystis pacifica SIR-1]
          Length = 422

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/167 (10%), Positives = 57/167 (34%), Gaps = 6/167 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D      ++   + AG+ + +A+  +  Q      ++    +    + G SL+++++  
Sbjct: 82  KDVSGVTRLMSTLLCAGVTLPEALVALTDQVESPRFKNVLSDIGSKVNEGSSLADAMASH 141

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +       +     +    +  G+L   L  ++  +  ++ +++KV        A A +
Sbjct: 142 PK-----VFTKLYINMVRAGEASGSLETVLIRIADFMDQQEELRSKVTTAMFYPVAMALV 196

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
              +   +   V  +          +        +  +  L+G   +
Sbjct: 197 GVGVVTLLMVKVVPSISEIFAGQGAELPFTTRTLIGFSDFLVGYWWL 243



 Score = 37.4 bits (85), Expect = 0.91,   Method: Composition-based stats.
 Identities = 15/134 (11%), Positives = 43/134 (32%), Gaps = 7/134 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
                   +   + +G+ +  A+ ++     +  +        +    G  ++ S+ R  
Sbjct: 286 AIARFARTLSTMLASGVQLLQALDIVRSLLGNVILEKVLSEARDEIREGAGIAPSLKRSG 345

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           ++ P        T +    +  G L + L +L+       +         +E      + 
Sbjct: 346 QFPP------LVTHMIAVGERSGQLEQMLTDLADAYDREASSAITRATSVLEPLMIVLMG 399

Query: 134 GSLPFCVSTLVYFT 147
           G++ F V  ++   
Sbjct: 400 GTVGFIVFAIMTPI 413


>gi|300692336|ref|YP_003753331.1| Tad secretion system, secretion accessory protein [Ralstonia
           solanacearum PSI07]
 gi|299079396|emb|CBJ52067.1| Tad secretion system, secretion accessory protein [Ralstonia
           solanacearum PSI07]
          Length = 313

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 66/148 (44%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   IK R     + FP++LD+I+  V AGL +  A+  +V +       +  E+  +  
Sbjct: 149 LAWKIKYRQRDVFESFPDSLDLIMVCVEAGLGLDAAILRVVDEMRAARPVMAQEYELLTL 208

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GLS  +++        + +VS    ++    + G +++ +L   S +LR ++ M A
Sbjct: 209 ELRAGLSREKALRHFAARTGVDDVSLLVAMLIQADRFGTSIAASLRVHSDMLRTKRQMLA 268

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A  +  K    +I  +   +  ++ 
Sbjct: 269 EERAAKIGTKILFPLIFCIFPSIYVVLL 296


>gi|310820454|ref|YP_003952812.1| general secretion pathway protein F [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393526|gb|ADO70985.1| General secretion pathway protein F [Stigmatella aurantiaca
           DW4/3-1]
          Length = 418

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/179 (10%), Positives = 58/179 (32%), Gaps = 8/179 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           ++ + + R     +D       +   + AG+ + +++  +V Q   +  +     + +  
Sbjct: 68  LRKMARGRVT--TEDIAITTRQLATLLAAGVTLVESLTALVDQVEKERFKRILSDIKQRV 125

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           + G SL++++ +  +             +    +  G L   L  L+     +  ++ K+
Sbjct: 126 NEGSSLADALGQHQKVFG-----SLYINMVRAGEASGALDTVLQRLADFTEGQAKLRQKI 180

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
               +       + G +   + T+V          +         + +  +  L     
Sbjct: 181 VGTMLYPAIMLVVGGGILVLLMTVVVPKVTKIFETMNATLPFTTRVLIGVSNFLQNWWF 239


>gi|117618056|ref|YP_858309.1| type 4 fimbrial assembly protein PilC [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559463|gb|ABK36411.1| type 4 fimbrial assembly protein PilC [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 413

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 16/158 (10%), Positives = 44/158 (27%), Gaps = 6/158 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQ 79
             I   + AG+P+  ++ +I          E   ++      G  +SE++ R  R+    
Sbjct: 80  RQITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDL 139

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                   +    +  G L      ++      + +K+K++           +   +   
Sbjct: 140 YCD-----LVEAGEQSGALETIYDRIATYREKSEALKSKIKKAMFYPTMVILVAIVVTSI 194

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +   V             +        +  +  +    
Sbjct: 195 LLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQNWW 232


>gi|113869483|ref|YP_727972.1| general secretion pathway protein F [Ralstonia eutropha H16]
 gi|113528259|emb|CAJ94604.1| general secretion pathway protein F [Ralstonia eutropha H16]
          Length = 405

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 59/173 (34%), Gaps = 11/173 (6%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
             L  ++ +            +   + AGLP+ +A+  +  Q+    V      +     
Sbjct: 56  SQLFARKLSTQEQAL--FTRQLASLIVAGLPLDEALGALADQAERAYVHELLAGIRAEVM 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SLS ++++  R     +       +    +  G+L   L  L+  +  R  + +K++
Sbjct: 114 GGSSLSVALAQHPR-----DFPDIYRALVSAGEHSGHLGLVLERLAGYIESRNTLTSKIR 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
                      +       V  L+ +  P  ++V  N  +   +L +    + 
Sbjct: 169 LAFTYPA---IVTVVAFAIVIFLLSYVVPQVVSVFANTKQKLPMLTIIMLALS 218


>gi|326404408|ref|YP_004284490.1| putative type II secretion system protein [Acidiphilium multivorum
           AIU301]
 gi|325051270|dbj|BAJ81608.1| putative type II secretion system protein [Acidiphilium multivorum
           AIU301]
          Length = 307

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 65/147 (44%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++   K+   K      +ALD++V    AGL +  A+  + G+   +   V  EF    +
Sbjct: 149 IQQRRKRFIQKVEGGLADALDLMVICADAGLSLESALVRVAGELQLTHPAVAQEFTLTAQ 208

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G ++ +S++ +     L  +   ++ +    Q G  L++AL  LS  LR  +  + 
Sbjct: 209 EMRIGGNIRDSLNALGVRTGLDSLKRLASTLIQTLQYGTPLTQALRTLSSELRQEQLTRF 268

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +A  +    +  +I  +  CV  +V
Sbjct: 269 EERAARLPVLLTLPMIIFILPCVFLVV 295


>gi|313902411|ref|ZP_07835814.1| hypothetical protein ThesuDRAFT_1381 [Thermaerobacter subterraneus
           DSM 13965]
 gi|313467342|gb|EFR62853.1| hypothetical protein ThesuDRAFT_1381 [Thermaerobacter subterraneus
           DSM 13965]
          Length = 260

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 73/174 (41%), Gaps = 1/174 (0%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSES 68
            +  +     L  ++  ++AG P+  A      + ++  +       +     GL L E+
Sbjct: 77  ERAAEALEGLLVTVIAHLQAGRPLRQAWIEAAREVAAPVLEPAKGEFLAALGAGLPLEEA 136

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           +        L+ +     V S   + GG+++     + + LR+++   A+V A + EA+ 
Sbjct: 137 LGLWHGQTGLRALRRCQAVASAHRRTGGDVTGPTLAVIQSLREQRLAWAEVAARTAEARL 196

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           SA ++  LP  V+       P ++  L  DP G   L  A    L G+ ++R +
Sbjct: 197 SARLLALLPVAVAAYALAMDPAFLGPLWEDPLGRGGLLYAVVSWLAGLYLLRRL 250


>gi|148272481|ref|YP_001222042.1| putative pilus assembly protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830411|emb|CAN01346.1| conserved membrane protein, putative pilus assembly protein
           [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
          Length = 287

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 68/173 (39%), Gaps = 3/173 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           + +P+ +D +V +VRAG+ + DAVA +       +R  FR          S + ++  + 
Sbjct: 109 EVWPDVVDHLVSAVRAGMGLPDAVASLAVAGPAVLRPAFRDFASVHRTTGSFAVALDELK 168

Query: 74  RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + +  +  G  L + L  L+R LR+   ++++ +A       +A +
Sbjct: 169 DQLADPTADRILETLRMAREVGGTQLPDVLRGLARFLREEAAIRSEAEARQSWVVNAAKL 228

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             + P+ +  L+            +   G +++ V      I   +M  +   
Sbjct: 229 GVAAPWIILALLSTRHEAVAA--YDTAAGTVVIVVGLVVSAIAYRLMLALGRL 279


>gi|326771893|ref|ZP_08231178.1| bacterial type II secretion system protein F domain-containing
           protein [Actinomyces viscosus C505]
 gi|326638026|gb|EGE38927.1| bacterial type II secretion system protein F domain-containing
           protein [Actinomyces viscosus C505]
          Length = 284

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 68/173 (39%), Gaps = 3/173 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           + +P A+D +V  VRAG+ + +A+  +  +  + VR +FR              S+ R+ 
Sbjct: 106 EVWPEAVDTLVSGVRAGMSLPEALTNLGERGPEAVRPQFRAFATDYAASARFDSSLDRLK 165

Query: 74  RYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                         + +     G +L   L +LS++LR+    + +++A        A +
Sbjct: 166 ARFADPVADRIVEALRLAHEVGGTDLGTLLRSLSQMLREDMRTRGELEARQSWTVNGAKV 225

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             + P+ V  L+   S            G ++L + A   +I   +M  +   
Sbjct: 226 AVAAPWLVLALLS--SRPQAAAAYATGAGAVILLIGAVVSVIAYRLMLRLGRL 276


>gi|322419939|ref|YP_004199162.1| Type II secretion system F domain-containing protein [Geobacter sp.
           M18]
 gi|320126326|gb|ADW13886.1| Type II secretion system F domain protein [Geobacter sp. M18]
          Length = 303

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + H   +R  K     P+ LD+I   V AGL +  A+         ++DP+  E +    
Sbjct: 143 LYHQYNERQLKIFHTLPDILDLITVCVDAGLSMDAALIKTTETPQFANDPLAKEIKIATM 202

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G    ES+  M     + +V  F T++S   + G +LS+AL+  +  LR ++   A
Sbjct: 203 ETRAGKPRIESLKDMAERTMVDDVRAFVTMLSQTERFGTSLSQALSVHAESLRTKRRQMA 262

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +  A     K    +I  +   +  ++    P Y+ +
Sbjct: 263 EEAAAKTTIKMVFPLILFIFPALLVVI--LGPAYVQI 297


>gi|317122038|ref|YP_004102041.1| hypothetical protein Tmar_1201 [Thermaerobacter marianensis DSM
           12885]
 gi|315592018|gb|ADU51314.1| hypothetical protein Tmar_1201 [Thermaerobacter marianensis DSM
           12885]
          Length = 274

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 1/171 (0%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRM 72
           +   + L  ++  ++AG P+  A      +  +  +       +     GLSL E++ + 
Sbjct: 94  EALESVLVTVIAHLQAGRPLRQAWVEAAREVVAPVLEPAKAEFVAGLSAGLSLDEALGQW 153

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                L+ +     V +   + GG+ +     +   LR+++   A V A + EA+ SA +
Sbjct: 154 YERTRLRALRRCQAVAAAHRRTGGDATGPTLAVIHGLREQRLAWADVAARTAEARLSARL 213

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           +  LP  V+       P ++  L NDP G   L    A  L GI ++R + 
Sbjct: 214 LALLPVVVTAYALALDPAFVRPLWNDPLGRWGLSYGVASWLAGIYLLRRLA 264


>gi|218893622|ref|YP_002442491.1| still frameshift type 4 fimbrial biogenesis protein PilC
           [Pseudomonas aeruginosa LESB58]
 gi|218773850|emb|CAW29664.1| still frameshift type 4 fimbrial biogenesis protein PilC
           [Pseudomonas aeruginosa LESB58]
          Length = 405

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 20/170 (11%), Positives = 54/170 (31%), Gaps = 6/170 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   + AG+P+  +  +I        +R     + +    G SL+ S+ +  
Sbjct: 67  DIALFTRQMSTMMAAGVPLLQSFDIISEGFDNPNMRKLVEEIKQEVAGGNSLANSLRKKP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           +             +    +  G L   L  ++      + +KAK++       A   + 
Sbjct: 127 Q-----YFDSLYCNLVDAGEQSGALETLLDRVATYKEKTEALKAKIKKAMTYPIAVIVVA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             +   +   V             +     ++ +  + +L    ++ L++
Sbjct: 182 IIVSAILLIKVVPQFQSVFEGFGAELPAFTMMVINISNVLQEWWLLVLLM 231



 Score = 37.0 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 43/129 (33%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +  +  AG+P+ +A+  + G + + V      ++ +    G+ L+ S+          
Sbjct: 277 RTLSTTFAAGVPLVEALDSVSGATGNVVFRDAVGKIKQDVSTGMQLNFSMRT------TN 330

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +  ++   +  G L + LA ++       +         ME    A +   +   
Sbjct: 331 IFPSMAIQMTAIGEESGALDDMLAKVAGFYEQEVDNAVDNLTALMEPMIMAVLGVLVGGL 390

Query: 140 VSTLVYFTS 148
           +  +     
Sbjct: 391 IIAMYLPIF 399


>gi|194366949|ref|YP_002029559.1| type II secretion system protein [Stenotrophomonas maltophilia
           R551-3]
 gi|194349753|gb|ACF52876.1| type II secretion system protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 419

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 20/171 (11%), Positives = 55/171 (32%), Gaps = 6/171 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +++G+P+  A+ +I  G  +  ++     V      G SL E++S+ 
Sbjct: 79  KDIAFFSRQMATMMKSGVPIVGALDIIASGHKNPRMKKMVDSVRTDIEGGSSLYEAVSKH 138

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L  ++    + +++K K++           +
Sbjct: 139 PVQ-----FDELYRNLVRAGEGAGVLETVLDTVATYKENIESLKGKIRKALFYPVMVMAV 193

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
              +   +   V             +      + V  +  ++    + L++
Sbjct: 194 ALLVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWLILIV 244



 Score = 35.5 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/136 (10%), Positives = 37/136 (27%), Gaps = 5/136 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                        + +AG+P+ +A+ ++ G + + V  +    +              + 
Sbjct: 282 NSAIARFARTTAVTFKAGVPLVEALGIVAGATGNTVYEDAVLRMRDDVSVGYPVNVSMKQ 341

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P          ++   +  G L   L  ++       N      +  +E     +I
Sbjct: 342 TNLFPH-----MVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPMIMVFI 396

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V  +     
Sbjct: 397 GTIVGGMVIGMYLPIF 412


>gi|24375595|ref|NP_719638.1| MSHA biogenesis protein MshG [Shewanella oneidensis MR-1]
 gi|24350490|gb|AAN57082.1|AE015842_2 MSHA biogenesis protein MshG [Shewanella oneidensis MR-1]
          Length = 406

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 20/165 (12%), Positives = 53/165 (32%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
           D+       +    R+G+P+  A+A +   +    ++     + E    G  LS ++++ 
Sbjct: 64  DELQIFTRQMYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSAMNQH 123

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L +A   LS  +   +  + +++A           
Sbjct: 124 PD-----VFDSLFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRIKAAMRYPIFVLIA 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           IG     ++ +V        +    D      + +  + + +   
Sbjct: 179 IGLAMVILNIMVIPKFAEMFSRFGADLPWATKVLIGTSNLFVNYW 223



 Score = 38.9 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 9/132 (6%), Positives = 35/132 (26%), Gaps = 5/132 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                      + AG+P++ A++++     +    +    +        +    S +   
Sbjct: 269 LARYCRSFSMMLSAGVPMTQALSLVADAVDNAYMHDKIVGMRR-----GIESGESMLRVS 323

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
              +  +     +    +  G + + L + +       +   K     +E      +   
Sbjct: 324 NQSKLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGIVAVI 383

Query: 136 LPFCVSTLVYFT 147
           +      +    
Sbjct: 384 VLILALGIYLPM 395


>gi|120406354|ref|YP_956183.1| type II secretion system protein [Mycobacterium vanbaalenii PYR-1]
 gi|119959172|gb|ABM16177.1| type II secretion system protein [Mycobacterium vanbaalenii PYR-1]
          Length = 260

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 62/171 (36%), Gaps = 1/171 (0%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                ALD+++  +R G     A+     +S   +      V     LG  ++  +    
Sbjct: 85  AALQGALDVLIGELRVGAHPVAAMNTAAQESDARIAGALGAVAARALLGADVAAGLRAQG 144

Query: 74  RYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           R   L       +    +    G  ++  +    R + +R+  + +V+A    A+A+A I
Sbjct: 145 RRSLLPGHWDRLAVCWHLAQAQGLAIATLMLAAQRDIAERERFRGRVEAGLAGARATAAI 204

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           +  LP     L +      ++ L +   G  LL     F+  G++    + 
Sbjct: 205 LAGLPVLGVLLGHAIGAEPLSFLFSGGFGGWLLVTGTVFVCCGLLWSDRIT 255


>gi|28493157|ref|NP_787318.1| hypothetical protein TWT190 [Tropheryma whipplei str. Twist]
 gi|28476197|gb|AAO44287.1| unknown [Tropheryma whipplei str. Twist]
          Length = 294

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 73/181 (40%), Gaps = 4/181 (2%)

Query: 7   KRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +R      + +P+ ++ ++ +VRAG+ + +A+  +       +R  F  +        + 
Sbjct: 108 RRLVSLDSNIWPDIVENVISAVRAGMGLPEALCSLSRFGPVRIRQIFCNLENEYGATGNF 167

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSM 124
           + +++     +   +       + +   LGG+ L + L NLS  +R+    +A++     
Sbjct: 168 ASAVANAKCALADPKADRILETVQLARSLGGSELIKVLRNLSEYMREDLATRAEIVGRQS 227

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
               +A I  + P+ V  ++   +        N   G +++ + A    I   +M ++  
Sbjct: 228 WVVNAARIAVAAPWAVLAIMSTRAETVSA--YNSQAGVVVIILGALSCAIAYKIMMVVAR 285

Query: 185 F 185
            
Sbjct: 286 I 286


>gi|308050051|ref|YP_003913617.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
           9799]
 gi|307632241|gb|ADN76543.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
           9799]
          Length = 321

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 62/158 (39%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +      R  K  + FP+ALD++V    +G  +  A+  +  +   S   +  E   V +
Sbjct: 160 LDRFAASRMRKIRNGFPDALDLLVVCCESGQGLLAALQRVSVELRVSHKELAEELLLVCQ 219

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ LS ++        L ++   +  I+   +LG  ++E L   +   RD++   A
Sbjct: 220 KNRAGIELSTALHEFSERTGLDDIRGLNGAITQSLRLGTGIAETLRVYADEYRDKRMQAA 279

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  A  +  K    ++  +       +    P  + V+
Sbjct: 280 EEMAAKLGVKIIFPMLTCIWPS--FFIVAVGPAVIKVM 315


>gi|329946365|ref|ZP_08293932.1| bacterial type II secretion system protein F domain protein
           [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328527341|gb|EGF54339.1| bacterial type II secretion system protein F domain protein
           [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 317

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 53/146 (36%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   + KR ++     P+ ++++  +V AG     A+  +V      +  E    +    
Sbjct: 162 LSRAVAKRLSRIETQLPDVVELLALAVGAGQGPVAAIERVVALGRGDLIDELGTTLTDIR 221

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  LS ++ RM R +    V+     I V  + G  L+E L + +  +R+        +
Sbjct: 222 SGTVLSTALDRMERRVGSVHVTRLCEAIVVALERGTPLAEVLRSQATDVREAARQDLMEE 281

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146
               E      ++  +         F
Sbjct: 282 GGRREIAQMVPVVFLVLPITVVFALF 307


>gi|238782877|ref|ZP_04626906.1| Type II secretion system protein [Yersinia bercovieri ATCC 43970]
 gi|238716300|gb|EEQ08283.1| Type II secretion system protein [Yersinia bercovieri ATCC 43970]
          Length = 264

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 55/147 (37%), Gaps = 2/147 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI--ET 58
           +K +I +R    L   P  +DI    V++G+ +  +++    +           ++    
Sbjct: 104 IKKIIARRVESILKSLPFFIDITAACVQSGMTIDSSLSYAARKFELINPDLSLIILKMAK 163

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +     L  +I  + +     E+  F + +      G  + + L  LS+ +R+ + +  +
Sbjct: 164 RAEINGLESAIKELHQCSTATEIKMFCSTLQYSISFGSTVYDQLIKLSQDIREMQLLVTE 223

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVY 145
            +   +  K +  +   +      LV 
Sbjct: 224 EKISKLSTKLTLPLFIFILIPFVVLVI 250


>gi|78048910|ref|YP_365085.1| fimbrial assembly protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78037340|emb|CAJ25085.1| Fimbrial assembly protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 420

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 52/168 (30%), Gaps = 6/168 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +++G+P+  ++ +I     +  ++    +V      G SL ESISR 
Sbjct: 80  KDIAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMKKMVGQVRTDIEGGSSLYESISRH 139

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L  ++    + + +K K++           +
Sbjct: 140 PVQ-----FDELYRNLVRAGEGAGVLETVLDTVATYKENIEALKGKIKKALFYPAMVIAV 194

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
              +   +   V             +      + V A+  ++    + 
Sbjct: 195 ALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVGASRFMVSYWWIM 242


>gi|312958905|ref|ZP_07773424.1| type IV pilus assembly protein PilC [Pseudomonas fluorescens WH6]
 gi|311286675|gb|EFQ65237.1| type IV pilus assembly protein PilC [Pseudomonas fluorescens WH6]
          Length = 402

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 55/166 (33%), Gaps = 6/166 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
            +       +   ++AG+P+  A  +I     + PVR   + + +    G SL+E++ + 
Sbjct: 63  AEITLLTRQLATLLKAGIPLLQAFDIIGEGFDNAPVRDLAQGLKQQIAAGSSLAEALHKH 122

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R             +    +  G L   L  ++      + +KA+++       A   +
Sbjct: 123 PR-----YFDDLYCNLVAAGEQAGALETLLERVAVHREKSEQLKARIKKAMTYPIAVLVV 177

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            G +   +   V          +     G  L  +A +  +     
Sbjct: 178 AGLVTGVLLVHVVPQFQSLFAGVDGQLPGFTLQVIALSEFMQRAWW 223



 Score = 38.6 bits (88), Expect = 0.45,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 41/129 (31%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +  +  AG+P+  A+  + G + S P +     +      G+ L+ S++         
Sbjct: 274 RTLSTTFAAGVPLVQALDSVAGATGSQPFKKAIEHMRRDVSTGMQLNHSMASSGL----- 328

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +  ++   +  G L   L  ++       + +       ME      + G +   
Sbjct: 329 -FPAMAVQMTAIGEESGTLERMLEKVASHYEADVDNQVDNLTSLMEPVIMVVLGGIVGAL 387

Query: 140 VSTLVYFTS 148
           V  +     
Sbjct: 388 VIAMYLPVF 396


>gi|309810754|ref|ZP_07704561.1| type II secretion system F domain protein [Dermacoccus sp.
           Ellin185]
 gi|308435291|gb|EFP59116.1| type II secretion system F domain protein [Dermacoccus sp.
           Ellin185]
          Length = 290

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 69/173 (39%), Gaps = 3/173 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           + +P+A+D +  +VRAGL + +A+  +     + +R +F              +S+  + 
Sbjct: 112 EAWPDAVDHVASAVRAGLSIPEALRQLSLHGPEVLREDFAAFARHDAAHGRFDDSLDVLK 171

Query: 74  RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + +     G ++   L  LS  LR+  + +A++ A      ++A +
Sbjct: 172 ARLADPAADRLIESLRLARNVGGSDVGRLLRTLSSFLREDASTRAELAAKQSWTVSAARL 231

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             + P+    +V F   G        P+G ++L   A    I  + M+ +   
Sbjct: 232 ALAAPWLALCVVGFRGEGLAA--YRTPQGVLVLVAGALVSWIAYVAMKAIGRL 282


>gi|167836684|ref|ZP_02463567.1| Bacterial type II secretion system protein F domain [Burkholderia
           thailandensis MSMB43]
          Length = 310

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 65/146 (44%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  +I++R  +     P+ALD++V    AG  +  A+  +  +      P+  EF    +
Sbjct: 150 LDLMIRQRQKRIAAYLPDALDLLVICTNAGNSLVVAIKRVASELKMICPPLADEFAVTAD 209

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G  +S +++ + + + +       T +    Q G  ++++L  LSR  R  + +  
Sbjct: 210 ELQIGGDISSALNALAKRIAVPSTRALVTTLVQSQQYGTPITQSLRQLSRTERSMQIVAL 269

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K S  ++  +   V+ +
Sbjct: 270 EEKAAKLAPKMSLPMLLFIMPTVALI 295


>gi|320104346|ref|YP_004179937.1| type II secretion system F domain-containing protein [Isosphaera
           pallida ATCC 43644]
 gi|319751628|gb|ADV63388.1| Type II secretion system F domain protein [Isosphaera pallida ATCC
           43644]
          Length = 415

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 61/176 (34%), Gaps = 12/176 (6%)

Query: 6   KKRTAKF------LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIET 58
           +KR   F                +     AGLP+  ++ ++  Q+    +++    V+E 
Sbjct: 61  RKRKKSFTIGGLSNKKLCLFTRQLSTLQDAGLPILRSLKILENQAKPGVLKNVLGDVVED 120

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G +LSE++++  +             +    + GG L   L  L+      ++++ +
Sbjct: 121 IESGSTLSEAMAKHPKA-----FDRLYCNMIKAGEAGGALETILQRLADFKEKAQSLRRR 175

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           ++   +      ++   +   +   +             D     +  + A+ ++I
Sbjct: 176 IKGAMVYPIVVIFVAFVIVGFILYFIIPKFEAIFKDFDVDLPQMTIWLIEASHIII 231


>gi|332670514|ref|YP_004453522.1| Type II secretion system F domain-containing protein [Cellulomonas
           fimi ATCC 484]
 gi|332339552|gb|AEE46135.1| Type II secretion system F domain protein [Cellulomonas fimi ATCC
           484]
          Length = 410

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 20/179 (11%), Positives = 56/179 (31%), Gaps = 19/179 (10%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   + +GL +  A+A++  Q+   P+     +V     +G++ S ++ + 
Sbjct: 71  KDLAVMSRQLATMIDSGLSLLRALAILSEQTESKPLAKVLAQVRSDVEVGVAFSTALGKH 130

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P          +    ++GG L E L +++        ++ K+++          +
Sbjct: 131 PTVFPP-----LMINMVKAGEVGGFLDETLVSVANNFEAEVKLRGKIKSAMTYPVVVFVV 185

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRG-------------HMLLGVAAAFMLIGIMV 178
                  +   +     G  + L                     ++    A ++  +  
Sbjct: 186 AILATTGMLLFIVPIFAGMFSSLGGTLPLPTRILMFLSQALKITIIPTVIALIVFAVWW 244



 Score = 43.6 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/134 (11%), Positives = 35/134 (26%), Gaps = 5/134 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                       + AG+P+  A+ ++   S + V     + ++      S+    S    
Sbjct: 275 AISRFTRNFGTMIHAGVPLLQALEIVGETSGNIVIERAAKAVQE-----SVRRGESLAGP 329

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
               +        +    +  G L   LA ++           +     +E      I  
Sbjct: 330 LSQHEVFPPMVVQMMAVGEDTGALDTMLAKVADFYDQEVESTTEQLTSLIEPIMIVVIGA 389

Query: 135 SLPFCVSTLVYFTS 148
            +   V  +     
Sbjct: 390 IVGAMVIAMYMPIF 403


>gi|260202856|ref|ZP_05770347.1| hypothetical protein MtubK8_00867 [Mycobacterium tuberculosis K85]
 gi|289572304|ref|ZP_06452531.1| transmembrane protein [Mycobacterium tuberculosis K85]
 gi|289536735|gb|EFD41313.1| transmembrane protein [Mycobacterium tuberculosis K85]
          Length = 266

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 63/172 (36%), Gaps = 1/172 (0%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                AL+++V  +RAG     A ++   ++  PV    R V     LG  ++  +    
Sbjct: 91  QALEAALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAA 150

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR-ILRDRKNMKAKVQALSMEAKASAWI 132
           R   L        V        G    +L   ++  + +R+   A+V A    A+ASA I
Sbjct: 151 RSSALPAYWERLAVWWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAI 210

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +  LP     L        ++ L+    G  LL V       G++    + +
Sbjct: 211 LAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITD 262


>gi|312621919|ref|YP_004023532.1| type ii secretion system f domain [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202386|gb|ADQ45713.1| Type II secretion system F domain [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 403

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 49/149 (32%), Gaps = 9/149 (6%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLS 66
           R    + D           + AG+P+  A+ VI  Q            + +    G  LS
Sbjct: 57  RKKIPIKDLAVFCRQFATMLMAGIPMVSALDVIAEQFKGRYFGKVLEDIHKKVQSGSMLS 116

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +++      P          +    ++ G++ +AL  ++        ++ K+    +  
Sbjct: 117 RALTEKAECFP-----SILINMIEAGEMSGSVDQALDRMATHFEKELKLRQKIINALIYP 171

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                +I      +  ++ F  P ++ + 
Sbjct: 172 A---IVILVAIGVLIIMLTFVVPTFVGIF 197



 Score = 34.7 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+ +  A+       ++  V  +F  VIE    G  LS  I+ +     
Sbjct: 271 FTRTLGTMTAAGVSIVIALETTKNVMTNVFVEKKFEEVIERVQRGEGLSYPIAEVG---- 326

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                    ++    +  GNL   L   +    +    +        E      +   + 
Sbjct: 327 --IFPRLVEIMIRTGEESGNLEYMLNKAADYYENEVENQVTRLTSIFEPIMIVLLAIMVG 384

Query: 138 FCVSTLVYFTS 148
           F +++++    
Sbjct: 385 FLLASIILPIF 395


>gi|254444010|ref|ZP_05057486.1| Bacterial type II secretion system protein F domain
           [Verrucomicrobiae bacterium DG1235]
 gi|198258318|gb|EDY82626.1| Bacterial type II secretion system protein F domain
           [Verrucomicrobiae bacterium DG1235]
          Length = 422

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 67/185 (36%), Gaps = 25/185 (13%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVR 74
                  +   ++AGL +  ++ V+  Q  + V       ++E+   G + S++++   +
Sbjct: 81  LSEFTRKLATLLQAGLTLIRSLEVLKDQEKNVVFRWIQNSLVESIQSGSTFSDALANFPK 140

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                E  F    ++   +  G L  +LA L+  L   + MK+++ +          ++ 
Sbjct: 141 -----EFDFLYVNMARAGEASGMLEVSLARLATYLEKTERMKSRLASAMTYPT---VVMI 192

Query: 135 SLPFCVSTLVYFTSPGYMNVLIND----------------PRGHMLLGVAAAFMLIGIMV 178
                V  L+ F  P +  + I++                    +         +IG+ V
Sbjct: 193 LSSIIVMGLLVFVVPSFKQIFIDEIGEDKMPMLTVYVLMVSEFLVAYWYVVIGAVIGLFV 252

Query: 179 MRLMI 183
            + ++
Sbjct: 253 FKKLV 257


>gi|91791492|ref|YP_561143.1| general secretion pathway protein F [Shewanella denitrificans
           OS217]
 gi|91713494|gb|ABE53420.1| General secretion pathway protein F [Shewanella denitrificans
           OS217]
          Length = 407

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 61/173 (35%), Gaps = 8/173 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       I   V AGLP+ +A+  +  QS  D + S    V      G SL++S++  
Sbjct: 67  ADLALITRQIATLVAAGLPIEEALKAVGQQSEKDRLGSMIMAVRSRVVEGYSLADSLAEF 126

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G+L   L  L+     R+ +K+K+    +       +
Sbjct: 127 P-----HIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKLTQAMIYPVVLTLV 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183
              +   +   V     G    +  +  G    L+  +      G++V+ L++
Sbjct: 182 AIGVIGVLLAAVVPKVVGQFEHMGQELPGTTQFLILASDFVQSYGVLVIGLIV 234


>gi|256786940|ref|ZP_05525371.1| integral membrane protein [Streptomyces lividans TK24]
          Length = 234

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 5/183 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +   ++R    +         +   VRAG    +A+      S+  +      V+     
Sbjct: 51  RRAKERRQDAVIA----LCGTLAGEVRAGRQPGEALLCAAQDSAG-LGEAQAAVLAAARF 105

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  +  +++        + +   +    V    G  L+  L  L   LR  ++ ++ ++A
Sbjct: 106 GGDVPGALALAAGQPGAEGLRGLAACWRVAVDQGAGLAAGLDRLEGALRAERDQRSDLRA 165

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
               A+A+A ++  LP     L        ++VL++   G   L        +G+  +  
Sbjct: 166 QLAGARATAVMLAGLPVLGLLLGVALGSDPLHVLLHTGAGVGCLLAGGVLESLGVWWVTR 225

Query: 182 MIN 184
           ++ 
Sbjct: 226 IVR 228


>gi|78060306|ref|YP_366881.1| putative Flp pilus assembly protein TadC [Burkholderia sp. 383]
 gi|77964856|gb|ABB06237.1| putative Flp pilus assembly protein TadC [Burkholderia sp. 383]
          Length = 324

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 75/167 (44%), Gaps = 4/167 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +   +K R  K  +DFP+ALD++   V AGL +  A+  +  +   SS+ V SE   ++ 
Sbjct: 157 LSQRVKVRQQKIFEDFPDALDLLTVCVEAGLGLDAALMKVSEELRFSSEVVASELDLLLL 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +     ++++  F  ++    + G ++SE+L  LS +LR R+ M+A
Sbjct: 217 EMRSGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESLRVLSDMLRTRRRMRA 276

Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
           + +A  +        I    P  +  L+         VL+    G  
Sbjct: 277 EERAAKIALKLLFPLIFCIFPALMLVLLGPAMIHVYRVLLPTFVGIA 323


>gi|13959696|sp|P22609|PILC_PSEAE RecName: Full=Type 4 fimbrial assembly protein pilC
          Length = 374

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/170 (11%), Positives = 51/170 (30%), Gaps = 7/170 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   + AG+P+  +  +I        +R     + +    G SL+ S+ +  
Sbjct: 35  DIALFTRQMATMMGAGVPLLQSFDIIGEGFDNPNMRKLVDEIKQEVSSGNSLANSLRKKP 94

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           +             +    +  G L   L  ++      +++KAK++       A   + 
Sbjct: 95  Q-----YFDELYCNLVDAGEQSGALENLLDRVATYKEKTESLKAKIRKAMTYPIAVIIVA 149

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             +   +   V             +      + V      +    + +++
Sbjct: 150 LIVSAILLIKVVPQFQSVFQGFGAELPAFTQMVVNL-SEFLQEWWLAVIV 198



 Score = 38.2 bits (87), Expect = 0.56,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 45/129 (34%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +  +  AG+P+ DA+  + G + + V      ++ +    G+ L+ S+          
Sbjct: 245 RTLSTTFAAGVPLVDALDSVSGATGNIVFKNAVSKIKQDVSTGMQLNFSMRTTS------ 298

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +  ++   +  G+L E L+ ++    +  +         ME    A +   +   
Sbjct: 299 VFPNMAIQMTAIGEESGSLDEMLSKVASYYEEEVDNAVDNLTTLMEPMIMAVLGVLVGGL 358

Query: 140 VSTLVYFTS 148
           +  +     
Sbjct: 359 IVAMYLPIF 367


>gi|197295161|ref|YP_002153702.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
 gi|195944640|emb|CAR57244.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
          Length = 324

 Score = 67.8 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 4/167 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   +K R  K  +DFP+ALD++   V AGL +  A+  +  +    S+ V SE   ++ 
Sbjct: 157 LSQRVKVRQQKIFEDFPDALDLLTVCVEAGLGLDAALMKVSEELRFRSEVVASELDLLLL 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +     ++++  F  ++    + G ++SE+L  LS +LR R+ M+A
Sbjct: 217 EMRSGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESLRVLSDMLRTRRRMRA 276

Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
           + +A  +        I    P  +  L+         VL+    G  
Sbjct: 277 EERAAKIALKLLFPLIFCIFPALMVVLLGPAMIHVYRVLLPTFVGIA 323


>gi|154488953|ref|ZP_02029802.1| hypothetical protein BIFADO_02262 [Bifidobacterium adolescentis
           L2-32]
 gi|154083090|gb|EDN82135.1| hypothetical protein BIFADO_02262 [Bifidobacterium adolescentis
           L2-32]
          Length = 425

 Score = 67.8 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/179 (11%), Positives = 54/179 (30%), Gaps = 18/179 (10%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
            DF      +   V AG+ +  A+ ++  Q  +  +R   +  +     G S S ++S  
Sbjct: 82  KDFAVMARQLATMVAAGVSLIRALNIVTEQIENVKLRKAVQACVAQVEGGSSFSGAMSAD 141

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +           +    + GG L ++L  ++        ++ ++++          I
Sbjct: 142 PDSLFPP----IMVNMVRAGETGGFLDKSLLTVADSFEADVRLQGQIKSAMAYPVVVLGI 197

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGH-------------MLLGVAAAFMLIGIMV 178
              L   +   +        + +                    +L  +  A + + +  
Sbjct: 198 ALILVMVMLLTIVPMFASMYDSMNAQLPFVTQILVDLGKVMPYVLPVLIVAVVALAMFW 256



 Score = 40.5 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/137 (10%), Positives = 40/137 (29%), Gaps = 5/137 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                 +     + +G+P+  A+ ++   S + V     +      +G  +         
Sbjct: 287 ALARFCNNFSSMLASGVPILQALDIVGSTSGNYVIDSSSK-----RVGRLVERGYRLADS 341

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
               +        +    +  G + + L++  R   +     AK     +E     ++  
Sbjct: 342 MSTEKIFPNMLVQMVAIGEDSGAIDKMLSSAGRAYDEEAQSMAKQLTSLLEPLMILFLGV 401

Query: 135 SLPFCVSTLVYFTSPGY 151
            + F V  L       +
Sbjct: 402 VVGFMVVALYMPMFSMF 418


>gi|126640410|ref|YP_001083394.1| type 4 fimbrial assembly protein [Acinetobacter baumannii ATCC
           17978]
          Length = 376

 Score = 67.8 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 17/177 (9%), Positives = 50/177 (28%), Gaps = 15/177 (8%)

Query: 1   MKHLIKKRTAKFL---------DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51
           ++++ +KR               D       +   ++AG+P+     ++     +P   E
Sbjct: 15  VRNIREKRKNILEGLFKKKVTTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMRE 74

Query: 52  FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
               +      G + + ++ +  ++            +    +  G L   L  ++    
Sbjct: 75  VVLGIKGEVEGGSTFASALRKYPQH-----FDNLFCSLVESGEQSGALETMLDRVAIYKE 129

Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
             + +K K++           +   +   +   V             D      + V
Sbjct: 130 KSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVV 186



 Score = 37.4 bits (85), Expect = 0.84,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 40/129 (31%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +  +  AG+P+ DA+    G +++ +      ++ E    G  L  ++    R     
Sbjct: 248 RTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVATGQQLQFAMRVSNR----- 302

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +  +    +  G L   L  ++    +  +         ME    A +   +   
Sbjct: 303 -FPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGL 361

Query: 140 VSTLVYFTS 148
           V  +     
Sbjct: 362 VIAMYLPIF 370


>gi|313835699|gb|EFS73413.1| type II secretion system F domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928370|gb|EFS92201.1| type II secretion system F domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314970222|gb|EFT14320.1| type II secretion system F domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328908049|gb|EGG27808.1| LOW QUALITY PROTEIN: Type II secretion system F domain protein
           [Propionibacterium sp. P08]
          Length = 301

 Score = 67.8 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 56/134 (41%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +K+R  +   D P+ +D++  +V AG+    A+  +  +   P+  E +  ++    G S
Sbjct: 143 VKRRKEQIDQDLPSFMDVLAVTVTAGIGFRRALRTVSERYGGPLADEIQLTLQHVDNGAS 202

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           + ++ + +        V  F +      +LG  L + L +++  +R      A  +A  +
Sbjct: 203 MRQAFTALRDRTGSAAVDEFVSAYVQSEELGAPLVDTLNHIAADMRRSSAQAALQRASRI 262

Query: 125 EAKASAWIIGSLPF 138
           E + S      +  
Sbjct: 263 EPRVSLVTTTVMVP 276


>gi|254517637|ref|ZP_05129693.1| type II secretion system protein [Clostridium sp. 7_2_43FAA]
 gi|226911386|gb|EEH96587.1| type II secretion system protein [Clostridium sp. 7_2_43FAA]
          Length = 400

 Score = 67.8 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 17/154 (11%), Positives = 45/154 (29%), Gaps = 7/154 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             D           + AG+ ++  + ++  +  +    E   +IE       L       
Sbjct: 61  TKDLAIFCRQFYTMLDAGVTITTCLNILSNEIPNKKLRELLSIIEDDVKKGEL----LSE 116

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 +        +    ++ GN+ E +  +S        +  KV++          +
Sbjct: 117 SMAKHKKYFPQLLISMVESGEVSGNIDEMMLRMSVHFEKENKINNKVKSAMTYPS---IL 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
                  V  ++ F  P ++ +   +     L+ 
Sbjct: 174 SIVAVIAVVFIMTFVMPTFIEMFEGEGIDLPLIT 207



 Score = 42.0 bits (97), Expect = 0.043,   Method: Composition-based stats.
 Identities = 16/137 (11%), Positives = 40/137 (29%), Gaps = 7/137 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + +G+ +  A+  + G   + V      ++ E    G  LS  I        
Sbjct: 270 FTRTLSTLLASGVSLVHALPTVAGVLENKVAEDAILKIRERVVRGDGLSGPIRE------ 323

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                   + +    +  G+L + L   +    D      +     +E      +   + 
Sbjct: 324 NNIFPKMLSSMIKIGEESGSLDDILNKTADFYDDEVEQAIQTATSMIEPLLIVIMGVVIG 383

Query: 138 FCVSTLVYFTSPGYMNV 154
             V +++      Y  +
Sbjct: 384 GIVISIMLPMFDMYTQM 400


>gi|148261008|ref|YP_001235135.1| type II secretion system protein [Acidiphilium cryptum JF-5]
 gi|146402689|gb|ABQ31216.1| type II secretion system protein [Acidiphilium cryptum JF-5]
          Length = 307

 Score = 67.8 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 65/147 (44%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++   K+   K      +ALD++V    AGL +  A+  + G+   +   V  EF    +
Sbjct: 149 IQQRRKRFIQKVEGGLADALDLMVICADAGLSLESALVRVAGELQLTHPAVAQEFTLTAQ 208

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G ++ +S++ +     L  +   ++ +    Q G  L++AL  LS  LR  +  + 
Sbjct: 209 EMRIGGNIRDSLNALGVRTGLDSLKRLASTLIQTLQYGTPLTQALRTLSSELRQEQLTRF 268

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +A  +    +  +I  +  CV  +V
Sbjct: 269 EERAARLPVLLTLPMIIFILPCVFLVV 295


>gi|222529861|ref|YP_002573743.1| type II secretion system protein [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456708|gb|ACM60970.1| type II secretion system protein [Caldicellulosiruptor bescii DSM
           6725]
          Length = 403

 Score = 67.8 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 50/149 (33%), Gaps = 9/149 (6%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLS 66
           R    + D           + AG+P+  A+ VI  Q  D         + +    G  LS
Sbjct: 57  RKKIPIKDLAVFCRQFATMLMAGIPMVSALDVIAEQFKDRYFGKVLEDIHKKVQSGSMLS 116

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +++      P          +    ++ G++ +AL  ++        ++ K+    +  
Sbjct: 117 RALAEKAECFP-----SILVNMIEAGEMSGSVDQALDRMATHFEKELKLRQKIINALIYP 171

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                +I      +  ++ F  P ++ + 
Sbjct: 172 A---IVILVAIGVLIIMLTFVVPTFVGIF 197



 Score = 34.7 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+ +  A+       ++  V  +F  VIE    G  LS  I+ +     
Sbjct: 271 FTRTLGTMTAAGVSIVIALETTKNVMTNVFVEKKFEEVIERVQRGEGLSYPIAEVG---- 326

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                    ++    +  GNL   L   +    +    +        E      +   + 
Sbjct: 327 --IFPRLVEIMIRTGEESGNLEYMLNKAADYYENEVENQVTRLTSIFEPIMIVLLAIMVG 384

Query: 138 FCVSTLVYFTS 148
           F +++++    
Sbjct: 385 FLLASIILPIF 395


>gi|86740440|ref|YP_480840.1| putative integral membrane protein [Frankia sp. CcI3]
 gi|86567302|gb|ABD11111.1| putative integral membrane protein [Frankia sp. CcI3]
          Length = 302

 Score = 67.8 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/182 (10%), Positives = 57/182 (31%), Gaps = 2/182 (1%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           + R            + +  ++ A   +  A+      +   +RSE   +         L
Sbjct: 94  QARQVARTQGIAVWAEQLRDTLAAAAGLEQAILATAQTAPAAIRSEIALLAARIERRERL 153

Query: 66  SESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++  +   +           + +        LS  L  L+   R + +M  +++    
Sbjct: 154 GPALRGLADDLDDPLADLVIGALILASEHQARQLSGLLGQLAATARAQVDMLGRIEVGRA 213

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
             + +  ++       +  +   +  +++   +   G ++L    A    G + +R M  
Sbjct: 214 RMRTTMRVVVVTSIVFAGGLVVFNRPFLDP-YSTAAGQLVLLAIGAIFAAGFVWLRRMAR 272

Query: 185 FD 186
            +
Sbjct: 273 IE 274


>gi|325109102|ref|YP_004270170.1| type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324969370|gb|ADY60148.1| Type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 416

 Score = 67.8 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 56/163 (34%), Gaps = 6/163 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                  +     AGLP+  ++ ++       P+++    VIE    G +LSE+++R  +
Sbjct: 79  LCTFTRQLSTLQDAGLPILRSLRILESQSKPGPLKNSLIGVIEDVESGNTLSEAMTRQPK 138

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                        +    + GG L   L  L+      +++K KVQ   +   +   + G
Sbjct: 139 A-----FDNLYCNMVKAGEAGGALEVILQRLAEFKEKSQSLKRKVQGAMIYPVSVLTVAG 193

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
            +   +   +             +     +  +  + +++   
Sbjct: 194 GIVGFIMYFIIPKFKEIFMGFGIELPAVTVALITVSDLVVNYF 236


>gi|91775991|ref|YP_545747.1| type II secretion system protein [Methylobacillus flagellatus KT]
 gi|91709978|gb|ABE49906.1| type II secretion system protein [Methylobacillus flagellatus KT]
          Length = 300

 Score = 67.8 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 71/157 (45%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           ++ L  +R      +    L ++V    +GL +  ++ ++V Q+S     +  E  RV+ 
Sbjct: 138 LRWLAARRRKMISKEITTFLYMLVMLFDSGLSLEHSLRIMVEQASDIMPHLAQELERVLA 197

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G    +++  M + + + E+S    ++   +Q GGN+ +++   + ++ +R+    
Sbjct: 198 RIRAGQDQGKALMSMSQMLDIPELSEAVAMLKQVAQQGGNVRDSIMRYAALIEERQFSHL 257

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           + +   + AK +  ++  +   +   +    PG++ +
Sbjct: 258 RERVSKLSAKMTIVMMIFMFPALMIFI--AGPGFIGL 292


>gi|15610794|ref|NP_218175.1| transmembrane protein [Mycobacterium tuberculosis H37Rv]
 gi|15843271|ref|NP_338308.1| hypothetical protein MT3758 [Mycobacterium tuberculosis CDC1551]
 gi|31794828|ref|NP_857321.1| transmembrane protein [Mycobacterium bovis AF2122/97]
 gi|121639571|ref|YP_979795.1| putative transmembrane protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148663520|ref|YP_001285043.1| putative transmembrane protein [Mycobacterium tuberculosis H37Ra]
 gi|148824861|ref|YP_001289615.1| transmembrane protein [Mycobacterium tuberculosis F11]
 gi|167970803|ref|ZP_02553080.1| conserved transmembrane protein [Mycobacterium tuberculosis H37Ra]
 gi|215424898|ref|ZP_03422817.1| transmembrane protein [Mycobacterium tuberculosis T92]
 gi|218755437|ref|ZP_03534233.1| transmembrane protein [Mycobacterium tuberculosis GM 1503]
 gi|219559729|ref|ZP_03538805.1| transmembrane protein [Mycobacterium tuberculosis T17]
 gi|224992068|ref|YP_002646757.1| putative transmembrane protein [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253800699|ref|YP_003033700.1| hypothetical protein TBMG_03698 [Mycobacterium tuberculosis KZN
           1435]
 gi|254233154|ref|ZP_04926480.1| hypothetical protein TBCG_03580 [Mycobacterium tuberculosis C]
 gi|260184575|ref|ZP_05762049.1| hypothetical protein MtubCP_00757 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260198698|ref|ZP_05766189.1| hypothetical protein MtubT4_00792 [Mycobacterium tuberculosis T46]
 gi|289441088|ref|ZP_06430832.1| conserved membrane protein [Mycobacterium tuberculosis T46]
 gi|289445252|ref|ZP_06434996.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A]
 gi|289555919|ref|ZP_06445129.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
 gi|289571895|ref|ZP_06452122.1| conserved membrane protein [Mycobacterium tuberculosis T17]
 gi|289748170|ref|ZP_06507548.1| conserved membrane protein [Mycobacterium tuberculosis T92]
 gi|289763834|ref|ZP_06523212.1| conserved transmembrane protein [Mycobacterium tuberculosis GM
           1503]
 gi|294992922|ref|ZP_06798613.1| hypothetical protein Mtub2_00045 [Mycobacterium tuberculosis 210]
 gi|297636334|ref|ZP_06954114.1| hypothetical protein MtubK4_19510 [Mycobacterium tuberculosis KZN
           4207]
 gi|297733327|ref|ZP_06962445.1| hypothetical protein MtubKR_19645 [Mycobacterium tuberculosis KZN
           R506]
 gi|306778013|ref|ZP_07416350.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
 gi|306786567|ref|ZP_07424889.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
 gi|306790932|ref|ZP_07429254.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
 gi|306791252|ref|ZP_07429554.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
 gi|306795319|ref|ZP_07433621.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
 gi|306801287|ref|ZP_07437955.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
 gi|306805499|ref|ZP_07442167.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
 gi|306974130|ref|ZP_07486791.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
 gi|313660659|ref|ZP_07817539.1| hypothetical protein MtubKV_19645 [Mycobacterium tuberculosis KZN
           V2475]
 gi|2960082|emb|CAA17980.1| PROBABLE CONSERVED TRANSMEMBRANE PROTEIN [Mycobacterium
           tuberculosis H37Rv]
 gi|13883629|gb|AAK48122.1| hypothetical protein MT3758 [Mycobacterium tuberculosis CDC1551]
 gi|31620425|emb|CAD95868.1| PROBABLE CONSERVED TRANSMEMBRANE PROTEIN [Mycobacterium bovis
           AF2122/97]
 gi|121495219|emb|CAL73705.1| Probable conserved transmembrane protein [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124602947|gb|EAY61222.1| hypothetical protein TBCG_03580 [Mycobacterium tuberculosis C]
 gi|148507672|gb|ABQ75481.1| putative conserved transmembrane protein [Mycobacterium
           tuberculosis H37Ra]
 gi|148723388|gb|ABR08013.1| conserved transmembrane protein [Mycobacterium tuberculosis F11]
 gi|224775183|dbj|BAH27989.1| putative transmembrane protein [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253322202|gb|ACT26805.1| conserved membrane protein [Mycobacterium tuberculosis KZN 1435]
 gi|289414007|gb|EFD11247.1| conserved membrane protein [Mycobacterium tuberculosis T46]
 gi|289418210|gb|EFD15411.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A]
 gi|289440551|gb|EFD23044.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
 gi|289545649|gb|EFD49297.1| conserved membrane protein [Mycobacterium tuberculosis T17]
 gi|289688757|gb|EFD56186.1| conserved membrane protein [Mycobacterium tuberculosis T92]
 gi|289711340|gb|EFD75356.1| conserved transmembrane protein [Mycobacterium tuberculosis GM
           1503]
 gi|308213542|gb|EFO72941.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
 gi|308328819|gb|EFP17670.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
 gi|308332686|gb|EFP21537.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
 gi|308340172|gb|EFP29023.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
 gi|308344146|gb|EFP32997.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
 gi|308347947|gb|EFP36798.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
 gi|308351901|gb|EFP40752.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
 gi|308356402|gb|EFP45253.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
 gi|323717517|gb|EGB26719.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
 gi|326905493|gb|EGE52426.1| conserved membrane protein [Mycobacterium tuberculosis W-148]
 gi|328460428|gb|AEB05851.1| conserved membrane protein [Mycobacterium tuberculosis KZN 4207]
          Length = 266

 Score = 67.8 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 1/172 (0%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                AL+++V  +RAG     A ++   ++  PV    R V     LG  ++  +    
Sbjct: 91  QALEAALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAA 150

Query: 74  RYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           R   L       +    + S  G  ++  +    R + +R+   A+V A    A+ASA I
Sbjct: 151 RSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAI 210

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +  LP     L        ++ L+    G  LL V       G++    + +
Sbjct: 211 LAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITD 262


>gi|194291073|ref|YP_002006980.1| general secretory pathway protein f, type II secretion system
           [Cupriavidus taiwanensis LMG 19424]
 gi|193224908|emb|CAQ70919.1| General Secretory Pathway protein F, type II secretion system
           [Cupriavidus taiwanensis LMG 19424]
          Length = 405

 Score = 67.8 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/178 (10%), Positives = 55/178 (30%), Gaps = 8/178 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
             L  ++ +            +   + AGLP+ +A+  +  Q+    V      +     
Sbjct: 56  SQLFARKLSTQEQAL--FTRQLASLIVAGLPLDEALGALADQAERPYVHELLAGIRAEVM 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +LS ++++  R     +       +    +  G+L   L  L+  +  R  + +K++
Sbjct: 114 GGSALSVALAQHPR-----DFPDIYRALVSAGEHSGHLGVVLERLAGYIESRNTLTSKIR 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                      +  ++   + + V                   ++ +  +  +     
Sbjct: 169 LAFTYPAIVTVVAFAIVIFLLSYVVPQVVSVFANTKQKLPTLTIIMLWLSDFVRNWWW 226


>gi|169235695|ref|YP_001688895.1| hypothetical protein OE2212R [Halobacterium salinarum R1]
 gi|167726761|emb|CAP13547.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 692

 Score = 67.8 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 17/144 (11%), Positives = 44/144 (30%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            ++R      + P+ LD    +  AG+   ++    V      +  E  R       G  
Sbjct: 460 ARRRRKAIEAEVPDFLDRFASTNEAGMAAVESFGRTVDGDLGALTQELERTWADIQWGAR 519

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  +++R    +    VS    + +      GNL   L   +      + ++   +   +
Sbjct: 520 IEHALTRFRDRVNTPAVSRVVALTTNAMAASGNLGPVLRIAANEATASRRLERDRRNELL 579

Query: 125 EAKASAWIIGSLPFCVSTLVYFTS 148
                 ++   +   +   +    
Sbjct: 580 TYVVVIYVSFFVFIAIIVALDTIF 603



 Score = 39.3 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/172 (10%), Positives = 51/172 (29%), Gaps = 5/172 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIET 58
           ++   +R  +        +  +    R+G+P+++ + ++                 V + 
Sbjct: 144 RYAAGERARRIDASMERTVAFMYALSRSGMPLAEVLRILARNQPVYGAAAEEMAVAVTDI 203

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            + G  +  ++ R+    P  +++ F+  +    Q G +L   L        +       
Sbjct: 204 DNYGADIITALERVGSRTPSDDLAEFTENLGSILQSGSDLPAFLKQEYEYYAEEAEATQS 263

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
                +   A A++   +   +  +      G    L        L      
Sbjct: 264 QFLELLATLAEAYVTVLVAGPLFLITILVVIGLT--LGGTLGFLRLTAFVLV 313


>gi|90412975|ref|ZP_01220973.1| putative MSHA biogenesis protein MshG [Photobacterium profundum
           3TCK]
 gi|90325990|gb|EAS42429.1| putative MSHA biogenesis protein MshG [Photobacterium profundum
           3TCK]
          Length = 406

 Score = 67.8 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 17/164 (10%), Positives = 43/164 (26%), Gaps = 4/164 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +        +    +AG+P+  A+  +   +S P+  E    + T               
Sbjct: 65  EALVIFCRQLYSLTKAGVPLLRAIKGLGQSASHPLMKETLDAVMTDLTNG----HSLSAA 120

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +  S     +    +  G L E+L  L+         + ++++           I
Sbjct: 121 MKQHRRVFSDLFVSMIHVGENTGRLDESLLQLAHYFEQEMETRRRIKSAMRYPLFVISAI 180

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
                 ++  V             D      + +  +   +   
Sbjct: 181 MLAMVVLNIKVIPQFASMFARFGVDLPLPTRILIGTSNFFVHYW 224



 Score = 35.9 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/135 (8%), Positives = 29/135 (21%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         +RAG+P++ A+ +      +              +   +    S  
Sbjct: 267 RAQMSRFSRTFALMIRAGVPLNQAIQMSAEALGNRFLE-----NRLIEMKNGIESGNSIT 321

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    +     +    +  G +   L  +S           K     +E      +
Sbjct: 322 STATDSGVFTPLVLQMIAVGEETGQVDNLLLEVSDFYDREVEYDLKTLTARIEPLLLLVV 381

Query: 133 IGSLPFCVSTLVYFT 147
              +      +    
Sbjct: 382 AVMVLILALGIFLPM 396


>gi|86144313|ref|ZP_01062645.1| Flp pilus assembly protein TadC [Vibrio sp. MED222]
 gi|85837212|gb|EAQ55324.1| Flp pilus assembly protein TadC [Vibrio sp. MED222]
          Length = 288

 Score = 67.8 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 58/158 (36%), Gaps = 4/158 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIET 58
           +    K          P  LD++   V  G+ +  ++  +  +    D   +   RV   
Sbjct: 133 VSARGKSNIKHISSRLPFLLDLMNVCVHTGMTIESSLEYLAKELHSVDSNLAHVVRVTVE 192

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +   + L +++      +P  E   F   +    Q G ++   L  L+  +R+   M  +
Sbjct: 193 RSRLVGLEKALEEFYELVPTSESQSFVMTMVQSLQFGSSVGPVLVTLASDIRELNMMDLE 252

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
            +   M AK S  +I  +   +  L+    PG M  L+
Sbjct: 253 ERIGKMGAKMSIPLIAFIMVPIIILIAA--PGIMRALM 288


>gi|330828058|ref|YP_004391010.1| type IV pilus assembly protein tapC [Aeromonas veronii B565]
 gi|328803194|gb|AEB48393.1| Type IV pilus assembly protein tapC [Aeromonas veronii B565]
          Length = 413

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 15/158 (9%), Positives = 42/158 (26%), Gaps = 6/158 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQ 79
             I   + AG+P+  ++ +I          E   ++      G  +SE++ R        
Sbjct: 80  RQITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEALRRHPL----- 134

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                   +    +  G L      ++      + +K+K++           +   +   
Sbjct: 135 YFDDLYCDLVEAGEQSGALETIYDRIATYREKSEALKSKIKKAMFYPTMVILVAIVVTSI 194

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +   V             +        +  +  +    
Sbjct: 195 LLLFVIPQFEDIFKSFGAELPVFTQFVIGISRFMQNWW 232



 Score = 34.7 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 38/135 (28%), Gaps = 5/135 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                    +  +  AG+P+ DA+    G S + V       I  + +         R V
Sbjct: 277 AAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIRNEVVAGMQINVAMRTV 336

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
              P          + +  +  G + + L+ ++ I     +         +E      + 
Sbjct: 337 DLFP-----DMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLG 391

Query: 134 GSLPFCVSTLVYFTS 148
             +   V  +     
Sbjct: 392 VLVGGMVIAMYLPIF 406


>gi|262374021|ref|ZP_06067298.1| general secretion pathway protein F [Acinetobacter junii SH205]
 gi|262311032|gb|EEY92119.1| general secretion pathway protein F [Acinetobacter junii SH205]
          Length = 408

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/177 (10%), Positives = 49/177 (27%), Gaps = 15/177 (8%)

Query: 1   MKHLIKKRTAKFL---------DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51
           +K++ +KR               D       +   ++AG+P+     ++     +P   E
Sbjct: 47  IKNIREKRKNILEGFMKKKVTTLDITVFTRQLATMMKAGVPLVQGFEIVAEGLENPSMRE 106

Query: 52  FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
               +      G + + ++ +  +             +    +  G L   L  ++    
Sbjct: 107 VVLGLKSEVEGGNTFAGALRKYPQ-----YFDNLFCSLVESGEQSGALETMLDRVAVYKE 161

Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
             + +K K++           +   +   +   V             D      + V
Sbjct: 162 KSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFTSFGADLPAFTQMVV 218



 Score = 38.2 bits (87), Expect = 0.60,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 38/128 (29%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +  +  AG+P+ DA+    G +++ V  E    I          +   R+    P   
Sbjct: 280 RTLATTFAAGVPLIDALTSTAGATNNVVYEEAVLKIREDVATGQQLQFAMRVSNRFP--- 336

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
               +  +    +  G L   L  ++    +  +         ME    A +   +   V
Sbjct: 337 --AMAIQMVAIGEESGALDSMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLV 394

Query: 141 STLVYFTS 148
             +     
Sbjct: 395 IAMYLPIF 402


>gi|94501408|ref|ZP_01307928.1| Type II secretory pathway, component PulF [Oceanobacter sp. RED65]
 gi|94426521|gb|EAT11509.1| Type II secretory pathway, component PulF [Oceanobacter sp. RED65]
          Length = 408

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/163 (11%), Positives = 54/163 (33%), Gaps = 7/163 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            +  +    ++G+P+   + ++     +P ++     V +    G   +  + +  ++  
Sbjct: 74  FMRQLATMAKSGVPLMQGLEIVADGLENPAMQKVVLSVKDEVSAGNDFASCLKKHPQH-- 131

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +  +    +  G L + L  ++      + +K KV         +  I   + 
Sbjct: 132 ---FDSLTCALIESGEQSGALEQMLDRVALYKEKSEALKQKVSKALKYPIVTLIIAAIVT 188

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA-FMLIGIMVM 179
             +   V  T     + L  D      + V  + +M    +++
Sbjct: 189 VILLVKVVPTFESMFSSLGGDLPAPTQMVVNISEWMQANYLIL 231



 Score = 40.9 bits (94), Expect = 0.093,   Method: Composition-based stats.
 Identities = 14/128 (10%), Positives = 37/128 (28%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
            ++  +  AG+P+ DA+  +   S + V  +    I       +   +  R         
Sbjct: 280 RVLSTTFAAGVPLVDALESVAEASGNVVYRDAILRIRDDVSTGTQMNASIRA-----TGV 334

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
                  +    +  G L   L  ++    +  +         +E    A++   +   +
Sbjct: 335 FPNMVAQMVAIGEESGALDAMLEKVASYYEEEVDNLVDGLTAMIEPIVMAFLGVVVGGLL 394

Query: 141 STLVYFTS 148
             +     
Sbjct: 395 IAMYLPIF 402


>gi|332969022|gb|EGK08062.1| type IV pilin biogenesis protein PilC [Kingella kingae ATCC 23330]
          Length = 422

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 64/174 (36%), Gaps = 8/174 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   ++AGLP+  A  ++    ++  + +    +      G +L +S ++
Sbjct: 81  SADIAVFTRQLSTMMKAGLPLMQAFDIVAKGHANASMTAMLMEIRNDVEQGEALGDSFAK 140

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +         F   +    + GG L   L  L+      + +K KV++      +   
Sbjct: 141 HPK-----YFDKFYCNLVAAGEAGGVLEGLLDKLATYKEKTEAIKKKVKSALTYPISIVV 195

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVMRLMI 183
           +  +L   +   V        + +  +  P    ++ ++ AF+  G +++  +I
Sbjct: 196 VAVALVIVMMMFVLPEFGKVYSSMGAELPPLTQFMMNISNAFVEFGWLIILALI 249


>gi|84385679|ref|ZP_00988710.1| hypothetical Flp pilus assembly protein TadC [Vibrio splendidus
           12B01]
 gi|84379659|gb|EAP96511.1| hypothetical Flp pilus assembly protein TadC [Vibrio splendidus
           12B01]
          Length = 280

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 61/148 (41%), Gaps = 2/148 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           ++   K   ++     P  LD++   V+ G+ +  A+  +  + ++       ++     
Sbjct: 123 LQMRRKMLISRTSAQLPYLLDMMSVCVQTGMTIEAALVYLGKELAEFDSDLCYQIKRTSD 182

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
                 L ++++ +   +P   V  F   I    Q G +++  L++L+  +R  + +  +
Sbjct: 183 SAKIHGLEKALNDLSERIPTPPVRSFVLTIIQNLQYGTSVASVLSDLAEDMRKVQILTVE 242

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYF 146
            +   + AK S  +I  + F +  L+  
Sbjct: 243 EKVGKLSAKMSVPLILFIMFPIVILILA 270


>gi|300856045|ref|YP_003781029.1| putative type II secretion system protein [Clostridium ljungdahlii
           DSM 13528]
 gi|300436160|gb|ADK15927.1| putative type II secretion system protein [Clostridium ljungdahlii
           DSM 13528]
          Length = 306

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 62/132 (46%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I+ R  K L D P  LD+I  SV AGL    A+A ++      +  EF + ++   
Sbjct: 148 LSRRIQNRKNKILKDLPYTLDLITVSVEAGLSFDGAIARVISNIRGELCDEFAKSLKEIT 207

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+    ++  M     ++E+S F + +    +LG +LS+ L   S  LR+ +   ++ +
Sbjct: 208 MGIERKAALKNMSERCDVKELSMFISSLIQADELGVSLSKVLRIESANLREHRRQVSREK 267

Query: 121 ALSMEAKASAWI 132
           A+    K    +
Sbjct: 268 AMKAPIKMLFPL 279


>gi|260463899|ref|ZP_05812095.1| type II secretion system protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259030274|gb|EEW31554.1| type II secretion system protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 321

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 69/157 (43%), Gaps = 4/157 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +    +++  ++ + FP+ +D+++    AG+ +   +  +  +   +   +    + V  
Sbjct: 163 LSQKTREKMREYRNGFPDFMDLMIVCSDAGMSMEAGIERVSKELARTYPALSQNLQLVSL 222

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G SL +++  +   + L EV  F+T++    +LG +LS AL   S  +R ++   A
Sbjct: 223 ELRAGRSLDDALKALADRLSLDEVRSFATLLQQSKELGTSLSGALRVFSDEMRHKRMSLA 282

Query: 118 KVQALSMEAKASAWII-GSLPFCVSTLVYFTSPGYMN 153
           + +A ++ AK S  +    LP  +   +         
Sbjct: 283 EEKAHALPAKMSIPVTVCILPVVLMIAIIPIIVKMTG 319


>gi|188990484|ref|YP_001902494.1| pilC, fimbrial assembly protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732244|emb|CAP50436.1| pilC, fimbrial assembly protein [Xanthomonas campestris pv.
           campestris]
          Length = 419

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/173 (12%), Positives = 54/173 (31%), Gaps = 6/173 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +++G+P+  ++ +I     +  ++    ++      G SL ESIS  
Sbjct: 79  KDIAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLYESISAH 138

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L  ++    + + +K K++           +
Sbjct: 139 PVQ-----FDELYRNLVRAGEGAGVLETVLDTVASYKENIEALKGKIKKAMFYPAMVVAV 193

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              +   +   V             +      L V A+  ++    + L++  
Sbjct: 194 AIIVSAILLIFVVPQFEEVFKGFGAELPAFTQLLVNASRFMVSYWWLMLVVAV 246



 Score = 38.6 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 15/137 (10%), Positives = 48/137 (35%), Gaps = 7/137 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISR 71
                        + +AG+P+ +A+ ++ G + + +  E   R+ +   +G  ++ ++ +
Sbjct: 282 NSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEEAVFRMRDDVSVGYPVNMAMKQ 341

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +  +  +         ++   +  G L   L  ++    +  N      +  +E     +
Sbjct: 342 VNLFPHM------VIQMTAIGEEAGALDAMLFKVAEYFEEEVNNAVDALSSLLEPLIMVF 395

Query: 132 IIGSLPFCVSTLVYFTS 148
           I   +   V  +     
Sbjct: 396 IGTIVGGMVIGMYLPIF 412


>gi|295395216|ref|ZP_06805424.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971978|gb|EFG47845.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 312

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 65/150 (43%), Gaps = 2/150 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   +KKR  + L +FP   +++  S+ AG    DA+  +   ++  +  E R  +    
Sbjct: 157 LTQAVKKREERILAEFPTIAELLALSITAGEGTVDALNRVCHTATGELSDELRIALAQAR 216

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL +++  M R   +Q +  F   +++    G  LSE L   +  +R+    + K+ 
Sbjct: 217 TGTSLVDALDAMARRTNIQSLIQFVDGLAIALSRGTPLSEVLRAQAADVREEG--RRKLM 274

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150
            LS + +    +   L     T+++   P 
Sbjct: 275 ELSGKKEVGMLVPVVLFVLPITVLFAVYPS 304


>gi|153871817|ref|ZP_02000889.1| Type 4 fimbrial assembly protein pilC [Beggiatoa sp. PS]
 gi|152071715|gb|EDN69109.1| Type 4 fimbrial assembly protein pilC [Beggiatoa sp. PS]
          Length = 406

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 19/189 (10%), Positives = 60/189 (31%), Gaps = 16/189 (8%)

Query: 1   MKHLIKKRTAKFLDDF----------PNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVR 49
           +   +KK+T  FL+                  +   + +G+ + ++  ++  G  +   +
Sbjct: 44  LPSKVKKKTTSFLEALNSKPVEPGDIALFARQMATMMSSGVALLESFDLVAGGHENPNFQ 103

Query: 50  SEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL 109
                +  +   G +L++ + R   +            +    +  G L   L  L+   
Sbjct: 104 KLVMDIKGSVEAGGTLADGLRRHPDH-----FDSLFCNLVYAGEQAGILESLLTKLADYK 158

Query: 110 RDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
              + MK +++       +   + G +   +   V        +    +      + +  
Sbjct: 159 EKSEGMKKRIKGALSYPMSIMVVAGIVSTVLLVYVVPVFADMFSSFGGELPALTQMVMRM 218

Query: 170 AFMLIGIMV 178
           +  ++G  +
Sbjct: 219 SDFMVGNWM 227



 Score = 46.7 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 44/136 (32%), Gaps = 7/136 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73
                   +     AG P+ +A+  + G   + V  E   ++      G +L++S+    
Sbjct: 272 AIARFTRTLATMFAAGTPLVEAMDSVAGACGNIVYYEATMKIKAEVETGETLADSMRESG 331

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         ++   +  G++ + L  ++    +  +   +  +  ME    A++ 
Sbjct: 332 ------VFPNMCVQMTQIGEQAGSIDKMLNKVADYYEEEVDALVESLSSMMEPMIMAFLG 385

Query: 134 GSLPFCVSTLVYFTSP 149
             +   V  +      
Sbjct: 386 VVIGGLVLAMYMPIFA 401


>gi|170734860|ref|YP_001773974.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
 gi|169820898|gb|ACA95479.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
          Length = 324

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 4/167 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   +K R  K  +DFP+ALD++   V AGL +  A+  +  +    S+ V SE   ++ 
Sbjct: 157 LSQRVKVRQRKIFEDFPDALDLLTVCVEAGLGLDAALMKVSEELRFRSEVVASELDLLLL 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +     ++++  F  ++    + G ++SE+L  LS +LR R+ M+A
Sbjct: 217 EMRSGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESLRVLSDMLRTRRRMRA 276

Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
           + +A  +        I    P  +  L+         VL+    G  
Sbjct: 277 EERAAKIALKLLFPLIFCIFPALMMVLLGPAMIHVYRVLLPTFVGVA 323


>gi|114561295|ref|YP_748808.1| general secretion pathway protein F [Shewanella frigidimarina NCIMB
           400]
 gi|114332588|gb|ABI69970.1| general secretion pathway protein F [Shewanella frigidimarina NCIMB
           400]
          Length = 410

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 69/185 (37%), Gaps = 10/185 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           + +L KKR +  + +       I   V AGLP+ +A+  +  QS  D + S    V    
Sbjct: 59  LANLFKKRIS--VAELALITRQIATLVAAGLPIEEALKAVGQQSEKDRLGSMIMAVRSRV 116

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G SL++S++                 +    +  G+L   L  L+     R+ +K+K+
Sbjct: 117 VEGYSLADSMAEFP-----HVFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKL 171

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML--IGIM 177
               +       +   +   +   V     G    +  +  G     + A+  +   G++
Sbjct: 172 TQAMIYPIVLTVVAIGVIAVLLAAVVPKVVGQFEHMGQELPGTTQFLILASDFVQHWGVV 231

Query: 178 VMRLM 182
           V+ L+
Sbjct: 232 VVLLI 236


>gi|240102253|ref|YP_002958561.1| type II secretion system protein F [Thermococcus gammatolerans EJ3]
 gi|239909806|gb|ACS32697.1| Bacterial type II secretion system protein F [Thermococcus
           gammatolerans EJ3]
          Length = 303

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 72/182 (39%), Gaps = 6/182 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
             + KR  +     P+A   +  S+RAG+  S+A+  +       +  EF+RV+     G
Sbjct: 86  WRVSKRIEEMEKHLPDAFFYLASSLRAGISFSEALEDLTTAKFGALTDEFKRVVGEIRKG 145

Query: 63  LSLSESISRMV-RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
            S  E++  M  R      V     +I    + G  +S+ L  ++  +R+   +K + +A
Sbjct: 146 RSTVEALKVMAVRNRKSPVVYRSLMIIIEALERGAPMSDVLVYVANDVREILRIKQERKA 205

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            +        I       V   +  T    M +++  P    +  V      +G +V++ 
Sbjct: 206 STGMQMMFFIITSG---FVGPAIIGTVGKLMGIMVQGPAKAQIPTVLNIL--LGFVVIQA 260

Query: 182 MI 183
           ++
Sbjct: 261 IV 262


>gi|56460009|ref|YP_155290.1| Flp pilus assembly protein TadC [Idiomarina loihiensis L2TR]
 gi|56179019|gb|AAV81741.1| Flp pilus assembly protein TadC [Idiomarina loihiensis L2TR]
          Length = 237

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 59/145 (40%), Gaps = 1/145 (0%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQH 60
           + L  K     +   P+  D+I   + +G+P+  A+  +    SD  +  E   ++    
Sbjct: 80  RQLALKNNKAIVRQLPDFCDLISMMIASGIPLISALEKVSASCSDLLLAREITSMLSRLR 139

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S ++S+  +      +++  +S+++    Q G +L+++L   +  LR      A+ +
Sbjct: 140 RGTSFAQSMYELSERYDAKQIHEWSSMLIKGYQQGTSLTKSLRFYANQLRQDLLNSAEKR 199

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145
           A     K    ++         ++ 
Sbjct: 200 AQEAPVKLLFPLVTCFFPVNFLVIL 224


>gi|239980169|ref|ZP_04702693.1| integral membrane protein [Streptomyces albus J1074]
          Length = 338

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 19/174 (10%), Positives = 62/174 (35%), Gaps = 2/174 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +   +  + +  ++   + +  A+      ++  +R     +++       L E++  + 
Sbjct: 124 EALASWTESLRDTIAGAVGLEQAIPASARAAAPVLRPHLDALVDRLRSRTPLPEALQHLA 183

Query: 74  RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + + ++  G  L + L  L++  R+  +M+ +V A     + S  I
Sbjct: 184 DEIDDASADIIVAALMLNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQRSSTRRSVQI 243

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + ++       +   +  ++      P G  +L        +G   +R +   +
Sbjct: 244 VVAVSVAFVLGLAVFNRDFVAP-YGTPVGQAVLACVCGLFALGFWWLRKLSTIE 296


>gi|149198877|ref|ZP_01875919.1| type IV pilus biogenesis protein PilC [Lentisphaera araneosa
           HTCC2155]
 gi|149138075|gb|EDM26486.1| type IV pilus biogenesis protein PilC [Lentisphaera araneosa
           HTCC2155]
          Length = 414

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 59/171 (34%), Gaps = 9/171 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIETQHLGLSLSESIS 70
             +       +   + AGLP+  A+  +  Q+     +R    ++ ++   G   S++++
Sbjct: 72  SKNLTVFTRQLATLLGAGLPMVRAIRTLAKQAKKDVILRQILTQIADSIEGGNGFSDALA 131

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
              +       +     +    +  G +   L  L+  +   + +K KV+   M   +  
Sbjct: 132 SQPKS-----FNKLYVNMIRAGEASGAMEAVLNRLAEFMEKSEKLKRKVKGALMYPCSVL 186

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVM 179
           +I   + + + T +        + L+      G     V  +  +  +  +
Sbjct: 187 FIAVCITWGLMTFIVPKFKEIFDDLLAGEPLPGLTEFVVQLSTFINTMWYI 237



 Score = 37.8 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 13/132 (9%), Positives = 46/132 (34%), Gaps = 7/132 (5%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRY 75
                ++   + +G+ + +A+ ++   +S+  V    + V ++   G S+S+ + +    
Sbjct: 282 AQFCRVLSTLLGSGVAILNALEIVRNTTSNAVVAKAVQSVADSVKEGESVSKPLDQSG-- 339

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                       +    +  G + E +  ++ I  +  ++        +E     ++   
Sbjct: 340 ----IFPLMMISMVEVGEETGAMPEMMLRVADIYEEEVDVAVDGLTSLIEPIMIVFLAVV 395

Query: 136 LPFCVSTLVYFT 147
           +   V  +    
Sbjct: 396 VGGIVIAMFMPM 407


>gi|88858666|ref|ZP_01133307.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein
           MshG (pilus type IV) [Pseudoalteromonas tunicata D2]
 gi|88818892|gb|EAR28706.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein
           MshG (pilus type IV) [Pseudoalteromonas tunicata D2]
          Length = 411

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/170 (10%), Positives = 60/170 (35%), Gaps = 6/170 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRM 72
           D+       +   ++AG+P+  A+  +   ++    +E    + +    G +LS +++  
Sbjct: 70  DELIIFCRQMYSLLKAGIPIIRAIVGLAETTTHKRFAEALTDLTKQLEQGRNLSSAMAS- 128

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 +  +     I V  +  G L +A   L+      +  + ++++           
Sbjct: 129 ----HKKIFNRLMVSIVVVGESTGRLEDAFLQLATYFEREQETRKRIKSAMRYPTFVILA 184

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + +  F ++  V  T     +    +      + +  +   +   ++ ++
Sbjct: 185 LVAAMFILNIFVIPTFANMFSKFNAELPLMTRILIGTSGFFVNYWLLLII 234



 Score = 34.3 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 9/127 (7%), Positives = 35/127 (27%), Gaps = 5/127 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
                 +R+G+P++  ++++     +    +         +   + +  S +        
Sbjct: 280 RSFAMILRSGVPMTTGLSLVAEAVDNTFMEQKVL-----EMRRGIEKGESLLRVSKQSGL 334

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
            +     +    +  G + E L   +       +   K     +E    + +   +    
Sbjct: 335 FTQLVLQMVAVGEETGQVDELLQESAEFYEREVDFDLKSLTAKIEPILISAVAVMVLVLA 394

Query: 141 STLVYFT 147
             +    
Sbjct: 395 LGIFTPM 401


>gi|54310532|ref|YP_131552.1| putative general secretion pathway protein F [Photobacterium
           profundum SS9]
 gi|46914975|emb|CAG21750.1| putative general secretion pathway protein F [Photobacterium
           profundum SS9]
          Length = 410

 Score = 67.5 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 60/172 (34%), Gaps = 11/172 (6%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66
           R     ++       +   V+AG+P+ + +  +  Q+    +R+    V      G +LS
Sbjct: 64  RRGISTNELSLVTRQLATLVQAGMPLEECLKAVGEQNEKPRLRNMLLAVRSRVVEGYTLS 123

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S++                 +    +  G+L   L  L+    +R+ M++K+Q   +  
Sbjct: 124 DSMAEYP-----HIFDQLFRAMVAAGEKSGHLDTVLNRLADYTENRQKMRSKLQQAMIYP 178

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                +       V+ L+    P  ++  +    G  L  +    +     V
Sbjct: 179 T---MLTLVAVAVVAFLLATVVPKIVDQFVQ--MGQKLPTITEVLLAASNFV 225


>gi|149174468|ref|ZP_01853094.1| General secretory pathway protein F [Planctomyces maris DSM 8797]
 gi|148846578|gb|EDL60915.1| General secretory pathway protein F [Planctomyces maris DSM 8797]
          Length = 401

 Score = 67.5 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 55/173 (31%), Gaps = 9/173 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGL 63
           I ++      +     + +   V AG+PV+ A+  I  Q  +P +      + ++   G 
Sbjct: 54  IAQKKRVPRKEIIYFTNQMAIMVDAGVPVATALEGISKQIENPVLAEILAHIQKSVESGS 113

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
             S +++   R             +   S+  G + + L  ++    + +    +V+   
Sbjct: 114 DFSAALADFPRQ-----FDRTYVNLIKASEASGTMPQMLNRIAAQAEEEQETIQQVKGAL 168

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
           M       +   +      L+ +  P  M +  +              +   I
Sbjct: 169 MYPAIMLVMCVGI---CIFLLTYVFPKLMPMFASRGAAIPAPTKIMIMVSTAI 218



 Score = 38.6 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 15/129 (11%), Positives = 35/129 (27%), Gaps = 5/129 (3%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           +  +  +V AG+P+ +A+ +  G + +    +    I                       
Sbjct: 272 IRTLATTVNAGVPMLEALELSSGVTDNVHFRQSWLEISELVTTG-----KQIHEAMEGKT 326

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                   +    +  G L   L  LS        +  K     +E      +   + F 
Sbjct: 327 LFPPTMQQMIASGESTGRLGMVLNKLSDYFDREVKIAIKSATTLIEPVMVVCMGSIIGFI 386

Query: 140 VSTLVYFTS 148
             +++    
Sbjct: 387 ALSMLLPIF 395


>gi|192361623|ref|YP_001983784.1| general secretion pathway protein F [Cellvibrio japonicus Ueda107]
 gi|190687788|gb|ACE85466.1| General secretion pathway protein F [Cellvibrio japonicus Ueda107]
          Length = 411

 Score = 67.5 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 58/186 (31%), Gaps = 13/186 (6%)

Query: 6   KKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++R  K    D       +   VR+GLP+ +A+     QS         RV+      + 
Sbjct: 63  RRRAGKLSVRDLSLITRQLASLVRSGLPLDEALQATAKQSQKANVK---RVVLQVRTRV- 118

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L                +     +    +  G LS  L  L+   +  + ++ +++   +
Sbjct: 119 LEGFSLAQAMGDNPGAFNDMYRALVRAGEGSGYLSPVLERLADYTQTSQQLQQRIKMAMI 178

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA-----FMLIGIMVM 179
                  +       +  L+ +  P  + +     R   +L  A           G+++ 
Sbjct: 179 YPVVMLMVSIG---VIVALMVWVVPKLVKIFEQGGRELPMLTQALIACSEFLQNYGVVLF 235

Query: 180 RLMINF 185
             +I  
Sbjct: 236 IAIIAV 241



 Score = 42.8 bits (99), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 43/131 (32%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMP 77
               +     +G+P+  A+ +     ++ V  E    V      G SL+ ++     + P
Sbjct: 280 FAATLSLLSASGVPLLQALNISGQVMTNKVMQEACDSVAAAVREGTSLNRAMENSGAFPP 339

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G L + L N +R       M   V    +E     ++ G++ 
Sbjct: 340 ------LLVQLVASGETNGTLPQQLDNAARDQERELEMMLGVAMGLLEPATIIFMGGAVC 393

Query: 138 FCVSTLVYFTS 148
             V  ++    
Sbjct: 394 LIVLAILTPIF 404


>gi|312882149|ref|ZP_07741898.1| hypothetical protein VIBC2010_06159 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370195|gb|EFP97698.1| hypothetical protein VIBC2010_06159 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 280

 Score = 67.5 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 64/149 (42%), Gaps = 4/149 (2%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--TQHLGLSLSES 68
           K     P  LD++   ++ G+ +  ++  +  +  +  +    ++           L ++
Sbjct: 133 KISAQLPYLLDMMAVCIQTGMTIEASLVYLGEELEEFDKDLCYQIQRTSDSAKIHGLEKA 192

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           ++     +P   V  F   I    Q G ++++ L +LS  +R  + +  + +   + AK 
Sbjct: 193 LNDFADRVPTTAVRSFVLTIIQNLQYGTSVAQVLGDLSEDMRKVQILTVEEKVGKLSAKM 252

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           S  +I  + F +  L+   +PG M ++IN
Sbjct: 253 SLPLILLIMFPIVVLI--LAPGIMQMMIN 279


>gi|254523373|ref|ZP_05135428.1| fimbrial assembly protein [Stenotrophomonas sp. SKA14]
 gi|219720964|gb|EED39489.1| fimbrial assembly protein [Stenotrophomonas sp. SKA14]
          Length = 407

 Score = 67.5 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/173 (11%), Positives = 54/173 (31%), Gaps = 6/173 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +++G+P+  A+ +I  G  +  ++     +      G SL E++S+ 
Sbjct: 67  KDIAFFSRQMATMMKSGVPIVSALDIIGSGHKNPRMKKMVDSLRTDIEGGSSLYEAVSKH 126

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L  ++    + + +K K++           +
Sbjct: 127 PVQ-----FDELYRNLVKAGEGAGVLETVLDTVATYKENIEALKGKIRKAMFYPAMVLAV 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              +   +   V             D      + V  +  ++    + L++  
Sbjct: 182 ALIVSGILLVWVVPQFEDVFKGFGADLPAFTQMIVNLSRFMVSWWWLILIVII 234



 Score = 37.4 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/136 (11%), Positives = 36/136 (26%), Gaps = 5/136 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                        + +AG+P+ +A+ ++ G + + V  E    +              + 
Sbjct: 270 NSAIARFARTTAVTFKAGVPLVEALGIVAGATGNTVYEEAVLRMRDDVSVGYPVNVAMKQ 329

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P          ++   +  G L   L  ++       N      +  +E      I
Sbjct: 330 RNLFPH-----MVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPIIMVII 384

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V  +     
Sbjct: 385 GTIVGGMVIGMYLPIF 400


>gi|303239211|ref|ZP_07325740.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
 gi|302593256|gb|EFL62975.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
          Length = 404

 Score = 67.5 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 60/179 (33%), Gaps = 6/179 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLS 66
           +      D           ++AG+P++  + V+  Q+++    E    + E    G+SLS
Sbjct: 58  KKKVTTKDLAIFNRQFAIVLQAGVPIASCMDVLKQQTTNQTLRECLNDIYENIQKGISLS 117

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            S+ +                +    ++ G L      L++   ++  + AK+++     
Sbjct: 118 NSMRK-----HEDIFPEIMICMVEAGEVSGQLDIVFERLAKQFENQNAINAKIRSALTYP 172

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
                I  ++   +   V  +  G +         +  + +A +   +      L+   
Sbjct: 173 IIVGVIAVAVIVVLMIFVVPSFVGILKDFNTPLPIYTKILIAVSNFFVNFWWAILIGAI 231


>gi|290958554|ref|YP_003489736.1| type II secretion system F protein [Streptomyces scabiei 87.22]
 gi|260648080|emb|CBG71188.1| putative type II secretion system F protein [Streptomyces scabiei
           87.22]
          Length = 286

 Score = 67.5 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 67/180 (37%), Gaps = 4/180 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            ++R    +    +A+      VRAG     A++      S  +      V+     G  
Sbjct: 106 ARQRRGDAVLALCSAV---AGEVRAGRQPGAALSRAARD-SGGLGDAGAAVLAAARFGGD 161

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  +++   R    + +   +    V    G  L+  L  L   LR  ++ +A ++A   
Sbjct: 162 VPNALALAARQPGAEGLLGLAACWRVAVDRGAGLAAGLDRLEGALRAERDQRADLRAQLA 221

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            A+++A ++  LP     L        ++VL++ P G   L V A     G+     ++ 
Sbjct: 222 GARSTAVMLAGLPVLGLLLGSALGADPLHVLLHSPAGLGCLFVGAVLEGAGLWWALRIVR 281


>gi|261252092|ref|ZP_05944665.1| flp pilus assembly protein TadC [Vibrio orientalis CIP 102891]
 gi|260935483|gb|EEX91472.1| flp pilus assembly protein TadC [Vibrio orientalis CIP 102891]
          Length = 314

 Score = 67.5 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 74/164 (45%), Gaps = 7/164 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +  ++ KR ++     P+ALD++V    +GL  + A+  +  +   S      E   V  
Sbjct: 154 LSMMVDKRQSRIRSGIPDALDLLVVCTESGLGFNAALRRVADELTISHPDFADELDTVCV 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ +S++ + +++   L E++   T+++  S++GG+LS+ L   +   RD++N + 
Sbjct: 214 KISAGVEMSDAFNDLIKRTGLSEIAGLVTMLAHASRIGGSLSQTLREYTEDYRDKRNQEI 273

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           +  A  +  K    ++  +  C    +    P  +  L     G
Sbjct: 274 EEIAAKIPTKMIFPLLIFIWPC--FFIVAIGPSML--LFTSTMG 313


>gi|91772317|ref|YP_565009.1| type II secretion system protein [Methanococcoides burtonii DSM
           6242]
 gi|91711332|gb|ABE51259.1| type II secretion system protein F domain [Methanococcoides
           burtonii DSM 6242]
          Length = 328

 Score = 67.5 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 59/152 (38%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +   +   K  +  PN L  I    RAGL +  +V  +       +  E R +  +   G
Sbjct: 106 YRKARYINKVEEYLPNFLRDIAEMSRAGLTLPASVETVAKGEYGEMTKEIRMMDASLSWG 165

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +S  +++    + M    ++    +I+  ++ GG +S  L   +R   + K ++ + +  
Sbjct: 166 ISFEDTLENFGKRMNTHLITRSVALITQANRAGGRVSFVLEAAARDASEIKTLERERRGN 225

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
                  +++   +   V  ++       M++
Sbjct: 226 MAVYVVISYMSFFVFIFVILMLATRFVPTMHM 257


>gi|304312709|ref|YP_003812307.1| Type IV fimbrial biogenesis membrane protein, involved in pilus
           assembly [gamma proteobacterium HdN1]
 gi|301798442|emb|CBL46667.1| Type IV fimbrial biogenesis membrane protein, involved in pilus
           assembly [gamma proteobacterium HdN1]
          Length = 398

 Score = 67.5 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 19/164 (11%), Positives = 48/164 (29%), Gaps = 7/164 (4%)

Query: 9   TAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLS 66
             K    D       +   ++AG+P+  +  ++     +    E    +      G SL+
Sbjct: 53  KKKITPLDISIFSRQLATMMKAGVPLVQSFDIVAEGLDNLSMKELVINIKNEVEGGNSLA 112

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++ +                +    +  G L   L  ++      + +KAK++      
Sbjct: 113 GALRKHPL-----YFDDLFCSLVDSGEQSGALETMLDRIATYKEKTEALKAKIKKAVKYP 167

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
            A   +   +   +   V  T     N    +      + +  +
Sbjct: 168 IAVVVVAVIVTTILLLKVVPTFEELFNGFGAELPAFTQMVIGMS 211



 Score = 39.7 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/165 (11%), Positives = 51/165 (30%), Gaps = 28/165 (16%)

Query: 5   IKKRTAKFLDDFPNAL--------------------DIIVRSVRAGLPVSDAVAVIVGQS 44
            K+R+ +F D   +AL                      +  +  AG+P+ +A+  + G +
Sbjct: 235 AKRRSQRFSDAL-DALSLKMPVVGNIIYQSTIARYARTLATTFAAGVPLVEALDSVAGAT 293

Query: 45  SDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALA 103
            + +      ++ E    G  ++ S+               +  ++   +  G+L   L 
Sbjct: 294 GNVIYRNAVLKIKEEVSSGTQMNFSMKSTGL------FPSMAVQMTAIGEESGSLDAMLD 347

Query: 104 NLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
            ++       +         +E    A +   +   +  +     
Sbjct: 348 KVATHYEQEVDAAVDGLTSLLEPIIMAVLGVIVGGLIIAMYLPIF 392


>gi|291452023|ref|ZP_06591413.1| integral membrane protein [Streptomyces albus J1074]
 gi|291354972|gb|EFE81874.1| integral membrane protein [Streptomyces albus J1074]
          Length = 289

 Score = 67.5 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 19/174 (10%), Positives = 62/174 (35%), Gaps = 2/174 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +   +  + +  ++   + +  A+      ++  +R     +++       L E++  + 
Sbjct: 75  EALASWTESLRDTIAGAVGLEQAIPASARAAAPVLRPHLDALVDRLRSRTPLPEALQHLA 134

Query: 74  RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + + ++  G  L + L  L++  R+  +M+ +V A     + S  I
Sbjct: 135 DEIDDASADIIVAALMLNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQRSSTRRSVQI 194

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + ++       +   +  ++      P G  +L        +G   +R +   +
Sbjct: 195 VVAVSVAFVLGLAVFNRDFVAP-YGTPVGQAVLACVCGLFALGFWWLRKLSTIE 247


>gi|330501800|ref|YP_004378669.1| pilin biogenesis protein [Pseudomonas mendocina NK-01]
 gi|328916086|gb|AEB56917.1| pilin biogenesis protein [Pseudomonas mendocina NK-01]
          Length = 406

 Score = 67.5 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 19/166 (11%), Positives = 48/166 (28%), Gaps = 6/166 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   ++AG+P+  +  +I        +R     + +    G S + S+ +  
Sbjct: 67  DIALFTRQMATMMKAGVPLLQSFDIIAEGFDNPNMRKLIDEIKQEVAAGNSFASSLRKKP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
            +            +    +  G L   L  ++      + +KAK++       A   + 
Sbjct: 127 EF-----FDDLYCNLVDSGEQSGALETLLDRIATYKEKTEALKAKIKKAMTYPIAVIVVA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             +   +   V                   ++ V  +  L     +
Sbjct: 182 VIVTAILLIKVVPQFESVFEGFGAQLPAFTMVVVNLSRWLQEWWFL 227



 Score = 40.9 bits (94), Expect = 0.080,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 40/131 (30%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +  +  AG+P+ DA+  + G + + V      R+      G  L+ S+        
Sbjct: 275 FARTLATTFAAGVPLVDALDSVAGATGNVVFRNAVNRIKNDVSSGSQLNFSMRNTG---- 330

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +  ++   +  G+L E L   +       +         ME    + +   + 
Sbjct: 331 --IFPTMAVQMTAIGEEAGSLDEMLDKTASYYEAEVDNAVDNLTTLMEPLIMSVLGVLVG 388

Query: 138 FCVSTLVYFTS 148
             +  +     
Sbjct: 389 GLIIAMYLPIF 399


>gi|218676254|ref|YP_002395073.1| putative Flp pilus assembly protein TadC [Vibrio splendidus LGP32]
 gi|218324522|emb|CAV26000.1| putative Flp pilus assembly protein TadC [Vibrio splendidus LGP32]
          Length = 288

 Score = 67.5 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 60/158 (37%), Gaps = 4/158 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIET 58
           +    K          P  LD++   V  G+ +  ++  +  +    D   +   RV   
Sbjct: 133 VSARGKANIKHISSRLPFLLDLMNVCVHTGMTIESSLEYLAKELHSVDSNLAHVVRVTVE 192

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +   + L +++      +P  E   F   +    Q G ++   LA L+  +R+   M  +
Sbjct: 193 RSRLVGLEKALEEFYELVPTSESQSFVMTMVQSLQFGSSVGPVLATLATDIRELNMMDLE 252

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
            +   M AK S  +I  +   +  L+    PG + +L+
Sbjct: 253 ERIGKMGAKMSIPLIAFIMVPIVVLIAA--PGILRMLM 288


>gi|332991955|gb|AEF02010.1| type IV pilus biogenesis protein PilC [Alteromonas sp. SN2]
          Length = 402

 Score = 67.5 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 54/182 (29%), Gaps = 14/182 (7%)

Query: 1   MKHLIKKRTAKFLD--------DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSE 51
           ++ + K++ + F          D       I   + AG+ +  ++ +I    +   +R  
Sbjct: 42  VRKVKKQQKSLFSRGGQKITAADISVFSRQIATMLAAGVTLIQSLDMISQGHAKASMRKL 101

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111
              +      G  LS S+ +                +    +  G L      ++     
Sbjct: 102 LGDITNEVRSGNPLSSSLRKHPE-----YFDDLYCDLVYTGEQSGALETIYDRIATYKEK 156

Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
            + +K+K++       A   +   +   +   V        +    +     L  +A + 
Sbjct: 157 AEALKSKIKKAMFYPVAVVVVALIVTTILLVFVVPQFEEIFSSFGAELPAFTLFVLAISN 216

Query: 172 ML 173
            +
Sbjct: 217 FV 218



 Score = 36.6 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 39/130 (30%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +  +  AG+P+  A+    G S + V  +    +  +  G     +  R     P 
Sbjct: 272 FTRTLATTFAAGVPLIGALESAAGASGNAVFRDAIMFMRKEVAGGMPMHTSMRATNVFP- 330

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                  T +    +  G++   L+ ++ I     +         +E    A +   +  
Sbjct: 331 ----DMVTQMVAIGEESGSVDSMLSKIATIYEAEVDDMVDGLTSLLEPMIMAVLGVVIGG 386

Query: 139 CVSTLVYFTS 148
            +  +     
Sbjct: 387 LIVAMYLPIF 396


>gi|4186119|emb|CAA10650.1| PilC protein [Pseudomonas stutzeri]
          Length = 405

 Score = 67.5 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 18/164 (10%), Positives = 48/164 (29%), Gaps = 6/164 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   ++AG+P+  +  +I        +R     + +    G S + S+ +  
Sbjct: 67  DIALFTRQMATMMKAGVPLLQSFDIIGEGFDNPNMRKLVDDLKQEVAAGNSFASSLRKKP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           +             +    +  G+L   L  ++      + +KAK++       A   + 
Sbjct: 127 Q-----YFDDLYCNLVDSGEQSGSLETLLDRVATYKEKTEALKAKIKKAMNYPIAVVLVA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
             +   +                 +     L+ +  +  L    
Sbjct: 182 VIVTAILLIQGGSAVQDVFANFGAELPAFTLMVIGLSEALQAWW 225



 Score = 40.5 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 40/130 (30%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +  +  AG+P+ DA+  + G + + V         T  +   +S  +         
Sbjct: 275 FARTLSTTFAAGVPLVDALDSVAGATGNVVFR-----SATNKIKSDVSSGMQLNFSMRTT 329

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                 +  ++   +  G L E L+ ++    D  +         ME    A +   +  
Sbjct: 330 GTFPSMAVQMTAIGEESGALDEMLSKVATFYEDEVDNMVDGLTALMEPMIMAVLGVLVGG 389

Query: 139 CVSTLVYFTS 148
            +  +     
Sbjct: 390 LIIAMYLPIF 399


>gi|73749037|ref|YP_308276.1| pilin biogenesis protein [Dehalococcoides sp. CBDB1]
 gi|73660753|emb|CAI83360.1| pilin biogenesis protein [Dehalococcoides sp. CBDB1]
          Length = 401

 Score = 67.5 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 62/174 (35%), Gaps = 13/174 (7%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRM 72
            +       +   + +G  +  ++ ++  Q+++ +  E    ++     G SLS ++S+ 
Sbjct: 62  REVILFSRQLALLLESGTDIVTSLELLQEQTTNKLFREIIGEIVNDIRGGSSLSLAMSKH 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +  P          +    + GG+L   L NL+  ++     + KV++        A +
Sbjct: 122 PKAFPPLYHR-----VIAAGEQGGSLEVVLRNLASFVQRNVETEKKVKSALTYPGVVAVV 176

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-------AFMLIGIMVM 179
              +   + T V        + +  +      + +            +IGI ++
Sbjct: 177 GILVLLLMVTFVLPAFTSLYSQMGTELPTPTRILIGLSDFFESWGLYVIGIFII 230



 Score = 33.9 bits (76), Expect = 9.8,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 7/140 (5%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSE 67
               L +   A   +    +AGLP+ + +      +++ + S     V      G  LS 
Sbjct: 260 RILLLSELSRACQTMSLLFKAGLPLPEIMNQTTAAANNKLISNALADVQHDLIRGEGLSR 319

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
            +++   ++P+         +    +  G L + LA +S       + +       ++  
Sbjct: 320 PMTKNPLFLPM------MVQMVSVGEETGKLDDTLATVSATYDTETDDRISAAIGMIQPV 373

Query: 128 ASAWIIGSLPFCVSTLVYFT 147
            +  I   + F    LV   
Sbjct: 374 MTIAIGLVVGFIAVALVSSM 393


>gi|197106493|ref|YP_002131870.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1]
 gi|196479913|gb|ACG79441.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1]
          Length = 300

 Score = 67.5 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 71/159 (44%), Gaps = 4/159 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +K     R  ++ D FP+ LD++V SV AGL +  AV  +  +       +    R ++ 
Sbjct: 141 LKSRKATREREYADGFPDLLDLLVASVEAGLSLDAAVTRVTDELERRYPNLTVHLRFLVL 200

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  ++ S     + +++    +T++    ++G +L + L   S+ +R ++ ++A
Sbjct: 201 ELRAGRARKDAWSAFADRLAIEDARALATMLRQAEEMGTSLGDTLQVFSQDMRQKRMLRA 260

Query: 118 KVQA-LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A           I+   P  ++ L+   +   + VL
Sbjct: 261 EEKALALSAKLTVPLILFIFPSLLTALMLPAAVRMIKVL 299


>gi|119715365|ref|YP_922330.1| type II secretion system protein [Nocardioides sp. JS614]
 gi|119536026|gb|ABL80643.1| type II secretion system protein [Nocardioides sp. JS614]
          Length = 411

 Score = 67.5 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 57/189 (30%), Gaps = 20/189 (10%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLS 64
           KKR      D           + AGL +  A++++  Q     +R   R V +    G S
Sbjct: 66  KKRIKP--RDLAVFARQFATMIDAGLTMLRALSIMAEQVENPELRKVLRAVKQDVEAGHS 123

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           LS +  +  R  P          ++   + GG L  A+  ++        +++K++A   
Sbjct: 124 LSSAFGKWPRVFPP-----LMISMAKAGEAGGFLDTAMRQIADNFEAEVKLRSKIKAALT 178

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN------------DPRGHMLLGVAAAFM 172
                 ++   +   +   V          L                    ++ + A   
Sbjct: 179 YPTVVFFLAIIMCIALLIFVVPVFEKMFKDLGGELPLPTKILVMLSAAMKYVVPLGAVLT 238

Query: 173 LIGIMVMRL 181
              +   R 
Sbjct: 239 GALVWWWRR 247



 Score = 40.5 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/137 (10%), Positives = 36/137 (26%), Gaps = 5/137 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                       + AG+P+  A+ ++   +   V            +  S+ +  S    
Sbjct: 276 ALARFARNFSTLLSAGVPILQALDIVSDTTGSVVIG-----RALAEVKESVRQGESVAGP 330

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                        +    +  G +   LA ++           +     +E    A++ G
Sbjct: 331 LSHHDVFPPMVVQMIASGEESGAIDAMLAKIAEFYDAEVESMTEGLTALIEPLMIAFLGG 390

Query: 135 SLPFCVSTLVYFTSPGY 151
            +   +  L       Y
Sbjct: 391 LVGSMIVALYMPMFKIY 407


>gi|256397694|ref|YP_003119258.1| type II secretion system protein [Catenulispora acidiphila DSM
           44928]
 gi|256363920|gb|ACU77417.1| type II secretion system protein [Catenulispora acidiphila DSM
           44928]
          Length = 291

 Score = 67.5 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 20/178 (11%), Positives = 56/178 (31%), Gaps = 2/178 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R     +      +++  ++ A   +  AV      + + +  E R +         L+ 
Sbjct: 94  RELARTEAVATFTEMLRDTLSAASGIGQAVRSSCAAAPEAIAGEARGLARRIDDQQDLAA 153

Query: 68  SISRMVRYMPLQEVSFFSTVIS-VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++      +           +         +L+  L +L+   R     + + QA  ++ 
Sbjct: 154 ALVTFADELRDPTADIVVVCLVHAIRNSAQDLAGLLGSLAVTARTLAAQRKRAQAARVQV 213

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + S  I+  +   +   ++     +++       G  +L    A    G + +  M  
Sbjct: 214 RTSVRIVTCVTAGMLAGLFVLDRSFLSP-YGSASGQFVLACGLALFAAGYVWLWRMAK 270


>gi|329895293|ref|ZP_08270935.1| Type IV fimbrial assembly protein PilC [gamma proteobacterium
           IMCC3088]
 gi|328922415|gb|EGG29758.1| Type IV fimbrial assembly protein PilC [gamma proteobacterium
           IMCC3088]
          Length = 403

 Score = 67.5 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 15/166 (9%), Positives = 45/166 (27%), Gaps = 4/166 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            D       +   ++AG+P+  +  ++     +P        I           +     
Sbjct: 64  ADIALVTRQLATMMKAGVPLIQSFEIVADGIENPRMRSMVNSIRGDVAAG----NALAGA 119

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                 +       +    +  G L   L  ++      + +KAK++       A   + 
Sbjct: 120 LGKHKDQFDELFCSLVNSGENSGTLETMLDRVATYKEKTEQLKAKIKKAMTYPIAVVIVA 179

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            ++   +   V            ++     L  +  ++      ++
Sbjct: 180 LAVTSLLLIKVVPQFAETFQSFGSELPAFTLFVLNISYFAQDYYLI 225



 Score = 38.6 bits (88), Expect = 0.46,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 41/131 (31%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +  +  AG+P+ +A+    G + + V +    R+ +    G SL  +I        
Sbjct: 273 FSRTLSTTFAAGVPLVEALESTAGATGNSVYKKAVLRIRDDVTGGSSLYAAIKSSGL--- 329

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G L E L  ++    +  +      +  ME    A +   + 
Sbjct: 330 ---FPNMLLQMVSIGEESGALDEMLDKVANHYEEAVDNAVDSLSSLMEPMIMAVLGVLVG 386

Query: 138 FCVSTLVYFTS 148
             +  +     
Sbjct: 387 GLMVAMYLPIF 397


>gi|326330147|ref|ZP_08196458.1| putative integral membrane protein [Nocardioidaceae bacterium
           Broad-1]
 gi|325951960|gb|EGD43989.1| putative integral membrane protein [Nocardioidaceae bacterium
           Broad-1]
          Length = 284

 Score = 67.5 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 60/171 (35%), Gaps = 3/171 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +        +   +  G+ +  A+   +  +  P+  E   ++           +I    
Sbjct: 101 EAMQEWTRALSGVLTVGVGLEQALITTLRSTPKPIAGEVTNLVARLRSRWDTERAIRTFA 160

Query: 74  RYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +        +  +     + G  L+  L +L+  + +    + +V+A   + +A+A  
Sbjct: 161 DELDDATGDLVAAYLIRASRRRGAGLASVLEDLAVSVAEDVRARRRVEADRAKPRATARW 220

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           +  +   V   + FT   Y+      P G ++L +     +  ++ MR M 
Sbjct: 221 VTIISASVLVFLAFTG-SYVAP-YGTPLGQVVLALLLTAYVATLVWMRQMA 269


>gi|284045232|ref|YP_003395572.1| type II secretion system F domain protein [Conexibacter woesei DSM
           14684]
 gi|283949453|gb|ADB52197.1| Type II secretion system F domain protein [Conexibacter woesei DSM
           14684]
          Length = 275

 Score = 67.5 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 51/119 (42%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           +   + P+ LD++  ++ AGLP+  AV  +  +++  +  E+R V     LG+    ++ 
Sbjct: 132 EMEAELPDLLDLLRVALGAGLPLERAVGDVADRATGLLAREWRTVAVEIGLGMPRERALV 191

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            +    P   V      +   ++ G  L EALA  +R  R  +  +   QA     K  
Sbjct: 192 ALAERCPTPGVGVLVRTLERAARHGAPLGEALAAQAREARSTRARRLDEQAARAAPKIQ 250


>gi|170724975|ref|YP_001759001.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
 gi|169810322|gb|ACA84906.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
          Length = 281

 Score = 67.5 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 64/156 (41%), Gaps = 4/156 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI--ET 58
           +    K    K     P  LD++   V+ G+ V  A+A +  +     +     +     
Sbjct: 125 LAMRKKMLVKKTSRQLPYMLDMMSVCVQTGMTVEAALAYLAEELKAFDKDLCFHIKKTAD 184

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
                 L +++  +   +P  EV  FS  +    Q G +++  LA+L+  +R  + +  +
Sbjct: 185 TSRITGLEKALLELSERIPTPEVRSFSLTLIQNIQYGTSIANVLADLAEDMRQMQVLAME 244

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
                + AK S  +I  + F +  L+   +PG+M +
Sbjct: 245 ESIGKLAAKMSVPLILFIMFPIVVLI--LAPGFMQL 278


>gi|4139238|gb|AAD05175.1| general secretory pathway protein F [Burkholderia pseudomallei
           1026b]
          Length = 405

 Score = 67.5 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 69/188 (36%), Gaps = 17/188 (9%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +   + +R              +   + AGLP+ +A+AV+  Q+  D +R     +    
Sbjct: 59  LGRKLSQREQAI------LTRQLASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEV 112

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G SL+ ++++  R     +       +    +  G L   L+ L+  + +R  +K K+
Sbjct: 113 LGGHSLANALTQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLAHYIEERNALKQKI 167

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIM 177
                       I   +   V+ L+ +  P  +NV  +  +   +L +   A    +   
Sbjct: 168 LLAFTYPAIVTVIAFGI---VTFLLSYVVPQVVNVFASTKQQLPVLTIVMMALSDFVRHW 224

Query: 178 VMRLMINF 185
              ++I  
Sbjct: 225 WWAILIGI 232



 Score = 34.3 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       S+          I     G +LS +++ +  + P
Sbjct: 274 FASTLGILTAAGVPILRALQAAGETLSNRAMRGNIDDAIVRVREGSALSRALNNVKTFPP 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G+++  L   +         +       +E      + G + 
Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAAECESRELERRTMFLTSLLEPLLILAMGGIVL 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 VIVLAVMLPI 397


>gi|150019029|ref|YP_001311283.1| type II secretion system protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149905494|gb|ABR36327.1| type II secretion system protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 400

 Score = 67.5 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 15/175 (8%), Positives = 45/175 (25%), Gaps = 4/175 (2%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
               L D           + AG+P+   + ++  Q  +    +  + I        +   
Sbjct: 57  KKVKLKDLSVFCRQFYTMLNAGVPILTCLEILSSQIENQKLRQATKAINDDVAKGEV--- 113

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                              +    +  GNL + +  ++        +  KV++  +    
Sbjct: 114 -LSDSMAKHKDIFPELLVSLVASGEASGNLEDIMLRMATHYEKENKITNKVKSALIYPTV 172

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
              +       + T V  T                   ++ +  +     + +++
Sbjct: 173 LGIVSILAVAFILTYVMPTFTEIFEQSGTVLPWSTKFLLSLSSGIKNYWYIIIIV 227



 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 46/134 (34%), Gaps = 7/134 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + +GLP+ +A+ ++   + + +   E  ++ +    G SL  S+        
Sbjct: 270 FTRTLSTLIASGLPLVEALKIVADVAGNKIAEIELLKIRDKVVRGESLYTSMRESG---- 325

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G+L + L   +    +  +   +     ME      +   + 
Sbjct: 326 --IFPEMLYSMVKIGEETGSLDDILNKTADFYDEELDSIIQSSVALMEPILIVVMGLIIG 383

Query: 138 FCVSTLVYFTSPGY 151
           F V++++      Y
Sbjct: 384 FMVASIMIPMFDSY 397


>gi|299538323|ref|ZP_07051606.1| type II secretion system protein [Lysinibacillus fusiformis ZC1]
 gi|298725910|gb|EFI66502.1| type II secretion system protein [Lysinibacillus fusiformis ZC1]
          Length = 401

 Score = 67.5 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 64/165 (38%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRM 72
            +F          +RAG+PV +A  ++  Q+ S P++    +V E    G++ S++  + 
Sbjct: 62  QEFVIYCRQYATLIRAGVPVVEATHILGEQTRSKPLKRALMQVEEDIRNGMAFSDAAGKH 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +  PL         +    +  GN+ + L  L+  L  + N+K K+Q+        + +
Sbjct: 122 PKVFPL-----LFVNMMRAGEATGNVDDTLDRLASTLEKQYNIKKKIQSAMTYPAILSLL 176

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
              +   +   +  T       +  +     ++ V  +  LI   
Sbjct: 177 TLVVGMFLMVFIVPTFMDAFKEMNLEMPLITVIVVGISDWLIQFW 221


>gi|23016184|ref|ZP_00055943.1| COG2064: Flp pilus assembly protein TadC [Magnetospirillum
           magnetotacticum MS-1]
          Length = 319

 Score = 67.5 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + + ++KR       FP+ALD+IV  V AGL V  A+  +  +    S  +  E      
Sbjct: 160 LANAVQKRQLALGRAFPDALDLIVICVDAGLSVETALGRVTEEMMNSSPEMAEEIGLTAA 219

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++         L +V   ST +    + G  +++AL  LS+  R+ +   A
Sbjct: 220 ELAFLADRRQAWENFAGRTGLPQVKSLSTALIQSEKYGTPVAQALKVLSQENRESRMAAA 279

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +A ++ AK +  +I      +  ++
Sbjct: 280 EKKAAALPAKLTVPMIVFFLPVLFLMI 306


>gi|156975614|ref|YP_001446521.1| hypothetical protein VIBHAR_03347 [Vibrio harveyi ATCC BAA-1116]
 gi|156527208|gb|ABU72294.1| hypothetical protein VIBHAR_03347 [Vibrio harveyi ATCC BAA-1116]
          Length = 187

 Score = 67.5 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 68/163 (41%), Gaps = 4/163 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           ++   +    K   + P  LDI+   V+  + +  + A +  +     +    ++ +   
Sbjct: 25  LEMRKRMLVRKVSKNLPYVLDIMSVCVQTCMTIEASFAYLAQELKIFDKDLCYQINKTSE 84

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
                 + +++  +   +P  E++ F   I      G +++  L++L+  +R  K ++ +
Sbjct: 85  AGKVHGIEKALHDLSVRLPAPEINSFVLTIIQNLHYGASVANVLSDLAEDMRRIKLLEIE 144

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
            +   + AK S  +I  + F +   +   +PG++ +     RG
Sbjct: 145 EKMGKLSAKMSVPLILLIMFPIVIFI--LAPGFLQIDFTSFRG 185


>gi|307548792|dbj|BAJ19114.1| TadC [Aggregatibacter actinomycetemcomitans]
 gi|307548807|dbj|BAJ19128.1| TadC [Aggregatibacter actinomycetemcomitans]
          Length = 288

 Score = 67.5 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 69/157 (43%), Gaps = 4/157 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +  ++K +  K ++D    +D++  +V+ G+ +  A+  +              ++    
Sbjct: 130 IGSILKAKIKKIMNDLAGFIDLVAVNVQTGISIEAALKQVATDFKTLNPDLTYVMLRIIR 189

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +     +S+++  +   +P  E+  F TV+      G ++   L  LS  +R+ + +  +
Sbjct: 190 KSEITGMSQALQDLSVSLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSTDIREIQLLAIE 249

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            +  ++ AK S  +I  + F +  L+   +PG M V 
Sbjct: 250 EKLGTLSAKMSIPLILFIMFPIIILI--LAPGVMRVF 284


>gi|288817624|ref|YP_003431971.1| fimbrial assembly protein [Hydrogenobacter thermophilus TK-6]
 gi|288787023|dbj|BAI68770.1| fimbrial assembly protein [Hydrogenobacter thermophilus TK-6]
 gi|308751222|gb|ADO44705.1| Type II secretion system F domain protein [Hydrogenobacter
           thermophilus TK-6]
          Length = 407

 Score = 67.5 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 64/175 (36%), Gaps = 13/175 (7%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
             D       +   + AG+ + DA+ ++  Q  +  +    ++V +    G++LS +++R
Sbjct: 65  DRDISIFCRQLGTMINAGVNIIDAINILAEQLPNKMLSDASKQVAKMVSEGMNLSAAMNR 124

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P          ++   +  GNL  AL   +        +K+K+++ S        
Sbjct: 125 FPKVFP-----ELVVNLAKVGEETGNLDVALIRAAEYYEKMAMIKSKIKSASFYPIFVVV 179

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-------AFMLIGIMVM 179
           I   +   +   +  T       L  +      + V A          +IG++++
Sbjct: 180 IATIIVTGILYYLVPTFAQMYESLGGELPLPTQMLVNASNALRNNLLTIIGVILL 234



 Score = 41.3 bits (95), Expect = 0.068,   Method: Composition-based stats.
 Identities = 15/137 (10%), Positives = 33/137 (24%), Gaps = 5/137 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
                      +     +G+ +  A  +    + + V  E             + E    
Sbjct: 268 LKSSMAKFARTMATLFASGVALERAFDIAGQVTGNLVIKESVE-----RAKKRVIEGKPM 322

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    +  G L E L  ++R   D  +   +     +E     +
Sbjct: 323 HASLEETGIFPKLVIAMVRVGEDTGRLDEMLDTIARFYEDEFDRAVEGMIKLIEPALMVF 382

Query: 132 IIGSLPFCVSTLVYFTS 148
           I G +   +  L     
Sbjct: 383 IGGVVGMILVALYLPIF 399


>gi|107028240|ref|YP_625335.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
 gi|116687151|ref|YP_840398.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
 gi|105897404|gb|ABF80362.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
 gi|116652866|gb|ABK13505.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
          Length = 324

 Score = 67.5 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 4/167 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   +K R  K  +DFP+ALD++   V AGL +  A+  +  +    S+ V SE   ++ 
Sbjct: 157 LSQRVKVRQRKIFEDFPDALDLLTVCVEAGLGLDAALMKVSEELRFRSEVVASELDLLLL 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +     ++++  F  ++    + G ++SE+L  LS +LR R+ M+A
Sbjct: 217 EMRSGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESLRVLSDMLRTRRRMRA 276

Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
           + +A  +        I    P  +  L+         VL+    G  
Sbjct: 277 EERAAKIALKLLFPLIFCIFPALMMVLLGPAMIHVYRVLLPTFVGVA 323


>gi|13471027|ref|NP_102596.1| integral membrane protein [Mesorhizobium loti MAFF303099]
 gi|14021771|dbj|BAB48382.1| probable integral membrane protein [Mesorhizobium loti MAFF303099]
          Length = 305

 Score = 67.5 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 70/157 (44%), Gaps = 4/157 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +   ++++  ++ + FP+ +D+++    AG+ +   +  +  +   +   +    + V  
Sbjct: 147 LTQQVREKMREYRNGFPDFMDLMIVCSDAGMSMEAGIERVSKELAKTYPALSQNLQLVSL 206

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G SL +++  +   + L EV  F+T++    +LG +LS AL   S  +R ++   A
Sbjct: 207 ELRAGRSLDDALKALADRLSLDEVRSFATLLQQSKELGTSLSGALRVFSDEMRHKRMSLA 266

Query: 118 KVQALSMEAKASAWII-GSLPFCVSTLVYFTSPGYMN 153
           + +A ++ AK S  +    LP  +   +         
Sbjct: 267 EEKAHALPAKMSIPVTVCILPVVLMIAIIPIIVKMTG 303


>gi|149188858|ref|ZP_01867148.1| hypothetical Flp pilus assembly protein TadC [Vibrio shilonii AK1]
 gi|148837278|gb|EDL54225.1| hypothetical Flp pilus assembly protein TadC [Vibrio shilonii AK1]
          Length = 282

 Score = 67.5 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 66/156 (42%), Gaps = 4/156 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           ++   K    K     P  LD++   V+ G+ +  A+  +  + ++       +V     
Sbjct: 123 LQLRRKVLIGKTSAQLPYLLDMMSVCVQTGMTIEAALIYLGKELAEFDSDLCYQVKRTSD 182

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
                 L ++++ +   +P   V  F   I    Q G ++++ L++L+  +R  + +  +
Sbjct: 183 SAKIHGLEKALNDLSDRIPTPAVRSFVLTIIQNLQYGTSVAQVLSDLAEDMRKVQILAVE 242

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
            +   + AK S  +I  + F +  L+   +PG M +
Sbjct: 243 EKVGKLSAKMSIPLILFIMFPIVILI--LAPGIMQM 276


>gi|147669803|ref|YP_001214621.1| type II secretion system protein [Dehalococcoides sp. BAV1]
 gi|146270751|gb|ABQ17743.1| type II secretion system protein [Dehalococcoides sp. BAV1]
          Length = 401

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 62/174 (35%), Gaps = 13/174 (7%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRM 72
            +       +   + +G  +  ++ ++  Q+++ +  E    ++     G SLS ++S+ 
Sbjct: 62  REVILFSRQLALLLESGTDIVTSLELLQEQTTNKLFREIIGEIVNDIRGGSSLSLAMSKH 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +  P          +    + GG+L   L NL+  ++     + KV++        A +
Sbjct: 122 PKAFPPLYHR-----VIAAGEQGGSLEVVLRNLASFVQRNVETEKKVKSALTYPGVVAVV 176

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-------AFMLIGIMVM 179
              +   + T V        + +  +      + +            +IGI ++
Sbjct: 177 GILVLLLMVTFVLPAFTSLYSQMGTELPTPTRILIGLSDFFESWGLYVIGIFII 230



 Score = 34.3 bits (77), Expect = 7.5,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 7/140 (5%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSE 67
               L +   A   +    +AGLP+ + +      +++ + S     V      G  LS 
Sbjct: 260 RILLLSELSRACQTMSLLFKAGLPLPEIMNQATAAANNKLISNALADVQHDLIRGEGLSR 319

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
            +++   ++P+         +    +  G L + LA +S       + +       ++  
Sbjct: 320 PMTKNPLFLPM------MVQMVSVGEETGKLDDTLATVSATYDTETDDRISAAIGMIQPV 373

Query: 128 ASAWIIGSLPFCVSTLVYFT 147
            +  I   + F    LV   
Sbjct: 374 MTIAIGLVVGFIAVALVSSM 393


>gi|315652230|ref|ZP_07905225.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315485536|gb|EFU75923.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 284

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 56/149 (37%), Gaps = 1/149 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I  R  + L D+P  L  +   + AG+P+ +A   +   +   +  E +      +
Sbjct: 131 LNDKINARRDELLRDYPGMLSKLTLLINAGMPIREAWIKVANTNEGILYQEMKNTAMELY 190

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKV 119
            G+  +E+         ++ +  FST++    Q G N + E L ++S    + K  + K 
Sbjct: 191 NGMQEAEAYKTFGERCSIKSLRKFSTMMIQNLQKGSNEVVEFLRDMSTEAWEEKKHEVKR 250

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTS 148
           +      K    I       +  ++    
Sbjct: 251 KGEKASNKLLLPIGLIFAGVLILIIVPMF 279


>gi|254389726|ref|ZP_05004951.1| type II secretion system protein [Streptomyces clavuligerus ATCC
           27064]
 gi|197703438|gb|EDY49250.1| type II secretion system protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 305

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 60/171 (35%), Gaps = 3/171 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +     +  +      G+ +   +   +      +R E + ++  +  G    ++     
Sbjct: 113 EAIEEWVRRMSDIHTVGVSLEATIQRSLETVPKAIREEVQLLVSREQSGWVPQDAYKAFA 172

Query: 74  RYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +    V   + ++ +     G  LS+A+  L+  L+     + +V+A   + + +   
Sbjct: 173 DDLNDALVDEVAALLILHVEDRGSGLSKAMRELAEALQHEVLARREVEADRQKPRTNDRW 232

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           +      +   +   S  Y+    N   G  +LG  A   ++  + MR M 
Sbjct: 233 VTMFCLGIFG-ITALSGTYVEP-YNTVTGQFVLGFVAVSFVLVKVWMRRMA 281


>gi|134281633|ref|ZP_01768341.1| general secretion pathway protein F [Burkholderia pseudomallei 305]
 gi|134247300|gb|EBA47386.1| general secretion pathway protein F [Burkholderia pseudomallei 305]
          Length = 405

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 69/188 (36%), Gaps = 17/188 (9%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +   + +R              +   + AGLP+ +A+AV+  Q+  D +R     +    
Sbjct: 59  LGRKLSQREQAI------LTRQLASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEV 112

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G SL+ ++++  R     +       +    +  G L   L+ L+  + +R  +K K+
Sbjct: 113 LGGHSLANALTQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEERNALKQKI 167

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIM 177
                       I   +   V+ L+ +  P  +NV  +  +   +L +   A    +   
Sbjct: 168 LLAFTYPAIVTVIAFGI---VTFLLSYVVPQVVNVFASTKQQLPVLTIVMMALSDFVRHW 224

Query: 178 VMRLMINF 185
              ++I  
Sbjct: 225 WWAILIGI 232


>gi|260550516|ref|ZP_05824726.1| type II secretory pathway [Acinetobacter sp. RUH2624]
 gi|260406431|gb|EEW99913.1| type II secretory pathway [Acinetobacter sp. RUH2624]
          Length = 408

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/197 (9%), Positives = 57/197 (28%), Gaps = 16/197 (8%)

Query: 1   MKHLIKKRTAKFL---------DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51
           ++ + +KR               D       +   ++AG+P+     ++     +P   E
Sbjct: 47  VRTIREKRKNILEGLFKKKVTTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMRE 106

Query: 52  FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
               +      G + + ++ +  ++        F   +    +  G L   L  ++    
Sbjct: 107 VVLGIKSEVEGGSTFASALKKYPQH-----FDNFFCSLVESGEQSGALETMLDRVAIYKE 161

Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             + +K K++           +   +   +   V             +      + V  +
Sbjct: 162 KSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGAELPAFTQMVVNMS 221

Query: 171 FMLIGIMVMRLMINFDV 187
             +     + ++I   V
Sbjct: 222 KWMQEYWFI-MIIAIGV 237



 Score = 36.6 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 38/128 (29%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +  +  AG+P+ DA+    G +++ +  +    I          +   R+    P   
Sbjct: 280 RTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVATGQQLQFAMRVSNRFP--- 336

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
               +  +    +  G L   L  ++    +  +         ME    A +   +   V
Sbjct: 337 --SMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLV 394

Query: 141 STLVYFTS 148
             +     
Sbjct: 395 IAMYLPIF 402


>gi|149376646|ref|ZP_01894405.1| Type II secretory pathway, component PulF [Marinobacter algicola
           DG893]
 gi|149359019|gb|EDM47484.1| Type II secretory pathway, component PulF [Marinobacter algicola
           DG893]
          Length = 409

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 57/173 (32%), Gaps = 6/173 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLS 66
           R    LD+       +    +AG+P+   +  +   + S  +      V +    G +++
Sbjct: 61  RKKITLDELIVFCRQMHALTKAGIPLIRTMRGLADTTRSPALSEVLDDVTDRLEAGSTMA 120

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++    +  P          +    +  G L +A   LS IL   ++ K +++      
Sbjct: 121 TAMQAHPKVFPD-----LFIAMIHVGENTGQLDDAFKRLSEILELERDTKRRLKQAMRYP 175

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
                 +      V+ LV        + L  D      + V  +  L+G   +
Sbjct: 176 TFVVIALFGALMVVNFLVIPKFSAVFSKLGADLPFLTQVLVGTSNFLLGYWYI 228



 Score = 42.0 bits (97), Expect = 0.035,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 46/132 (34%), Gaps = 5/132 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                      + AG+PV+ A+ V+   + +       + I+   +G+   ES+ R  R 
Sbjct: 272 LSRFARNFASMLSAGMPVTHALTVVADATDNAW---ISKHIKDMRIGIERGESLLRTARQ 328

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
             +   +     +    +  G++ + L N++    +  +   K  A S+E      +   
Sbjct: 329 SDM--FTPLILQMIAVGEETGSVDDMLVNVADFYDEDVDYGLKRLAESIEPILIVAMGIL 386

Query: 136 LPFCVSTLVYFT 147
           +      +    
Sbjct: 387 VLILALGVFLPI 398


>gi|297627215|ref|YP_003688978.1| hypothetical protein PFREUD_20700 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922980|emb|CBL57562.1| Hypothetical membrane protein [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 265

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 61/176 (34%), Gaps = 5/176 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           H  ++   K   +  +A  ++   +R G   + A+AV   +               Q +G
Sbjct: 83  HRAERSAIKRSQEVAHACRVMSAQLRIGQTPAQALAVAAEECE-----VLAGCRAAQQVG 137

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             +  ++           ++       +  + G  L+ A   +S+ +     ++A + A 
Sbjct: 138 ADVPRTLMAAGDLPGCSGLAALGRAWKLCERSGSPLAPAATRVSQTVDGDARLRADIAAE 197

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
               +A+  ++ +LP     + + +    +  L     G   L  A   +  G++ 
Sbjct: 198 LAVPRATGRLLTALPLLGIGMGFVSGGDPVAFLTTTMIGKACLVGAVVLVCAGLVW 253


>gi|319940445|ref|ZP_08014790.1| hypothetical protein HMPREF9464_00009 [Sutterella wadsworthensis
           3_1_45B]
 gi|319806071|gb|EFW02820.1| hypothetical protein HMPREF9464_00009 [Sutterella wadsworthensis
           3_1_45B]
          Length = 303

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 58/147 (39%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +K +  +R        P+ALD++V    AGLP +  V V+  +       +  E      
Sbjct: 143 LKSMAARRYTALERSMPDALDLMVICAEAGLPFTRIVKVVSRELELSAPVLAHELTLTNA 202

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +    S ++  +     +  +    + +    Q G  L++AL N++   R    +  
Sbjct: 203 ELEIMPERSAALRNLAERTRVPSIEGMVSTLIQAEQFGTPLAQALHNIAAESRSTLILTL 262

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +A  + A+ S  ++  +   V  +V
Sbjct: 263 EERAGKLPARLSLPLMTLILPPVVAIV 289


>gi|261867450|ref|YP_003255372.1| TadC [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412782|gb|ACX82153.1| TadC [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 288

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 69/157 (43%), Gaps = 4/157 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +  ++K +  K ++D    +D++  +V+ G+ +  A+  +              ++    
Sbjct: 130 IGSILKAKIKKIMNDLAGFIDLVAVNVQTGISIEAALKQVATDFKTLNPDLTYVMLRIIR 189

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +     +S+++  +   +P  E+  F TV+      G ++   L  LS  +R+ + +  +
Sbjct: 190 KSEITGMSQALQDLSVSLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSTDIREIQLLAIE 249

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            +  ++ AK S  +I  + F +  L+   +PG M V 
Sbjct: 250 EKLGTLSAKMSIPLILFIMFPIIILI--LAPGVMRVF 284


>gi|54310367|ref|YP_131387.1| putative MSHA biogenesis protein MshG [Photobacterium profundum
           SS9]
 gi|46914808|emb|CAG21585.1| putative MSHA biogenesis protein MshG [Photobacterium profundum
           SS9]
          Length = 407

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/164 (9%), Positives = 43/164 (26%), Gaps = 4/164 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +        +    +AG+P+  A+  +   +S P+  E    + +               
Sbjct: 66  EALVIFCRQLYSLTKAGVPLLRAIKGLGQSASHPLMKETLDAVMSDLTNG----HSLSAA 121

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +  S     +    +  G L E+L  L+         + ++++           I
Sbjct: 122 MKQHRRVFSDLFVSMIHVGENTGRLDESLLQLAHYFEQEMETRRRIKSAMRYPLFVISAI 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
                 ++  V             D      + +  +   +   
Sbjct: 182 MLAMVVLNIKVIPQFASMFARFGVDLPLPTRILIGTSNFFVHYW 225



 Score = 35.9 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/135 (8%), Positives = 29/135 (21%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         +RAG+P++ A+ +      +              +   +    S  
Sbjct: 268 RAQMSRFSRTFALMIRAGVPLNQAIQMSAEALGNRFLE-----NRLIEMKNGIESGNSIT 322

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    +     +    +  G +   L  +S           K     +E      +
Sbjct: 323 STATDSGVFTPLVLQMIAVGEETGQVDNLLLEVSDFYDREVEYDLKTLTARIEPLLLLVV 382

Query: 133 IGSLPFCVSTLVYFT 147
              +      +    
Sbjct: 383 AVMVLILALGIFLPM 397


>gi|332142397|ref|YP_004428135.1| type IV pilus biogenesis protein PilC [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327552419|gb|AEA99137.1| type IV pilus biogenesis protein PilC [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 402

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 53/175 (30%), Gaps = 9/175 (5%)

Query: 8   RTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSL 65
           RT K    D       I   + AG+ +  ++ +I    ++  VR     + +    G  L
Sbjct: 56  RTQKIKPADISVISRQIATMLAAGVTLIQSLEMIAQGHANPAVRKLLGEITDEVKSGNPL 115

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S ++ +                +    +  G L      ++      + +K+K++     
Sbjct: 116 SSALRKHPL-----YFDDLYCDLVYTGEQSGALETIYDRIATYKEKAEALKSKIKKAMFY 170

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             A   +   +   +   V        +    +       +L ++      GI +
Sbjct: 171 PIAVLVVAFIVTTILLVFVVPQFEEIFSSFGAELPAFTQFVLAISRFVQDYGIFI 225



 Score = 37.8 bits (86), Expect = 0.63,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 40/131 (30%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +  +  AG+P+  A+    G   +   R     + +    G+ +  ++        
Sbjct: 272 FTRTLATTFAAGVPLIGALESAAGASGNAVYRDAILYIRKEVAGGMPMHVAMRA------ 325

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            Q      T +    +  G++ E L+ ++ I     +         +E    A +   + 
Sbjct: 326 TQVFPDMVTQMIAIGEESGSVDEMLSKIATIYEAEVDDMVDGLTSLLEPMIMAVLGVVIG 385

Query: 138 FCVSTLVYFTS 148
             +  +     
Sbjct: 386 GLIVAMYLPIF 396


>gi|260892665|ref|YP_003238762.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
 gi|260864806|gb|ACX51912.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
          Length = 269

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 50/146 (34%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   + +R A      P+    +  ++ AG  +  A+         P+  E  RV+    
Sbjct: 111 LNSRVARRKALIRRQLPDFSVFLATALTAGADLPTALREAGTHVGGPIGEEVERVLLEFG 170

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +L  ++  M     + E+             G +++E +   +   R  +  +    
Sbjct: 171 LGRNLVSALEDMADRCDMDELRLLLWSAGRAYAYGTSVAEEVRAQADRQRSMRRFEVMEA 230

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146
           A  +       I+  +   +  +V +
Sbjct: 231 AGKLAIYLIFPILFFMLLPLMVVVMY 256


>gi|239981063|ref|ZP_04703587.1| hypothetical protein SalbJ_16622 [Streptomyces albus J1074]
 gi|291452929|ref|ZP_06592319.1| integral membrane protein [Streptomyces albus J1074]
 gi|291355878|gb|EFE82780.1| integral membrane protein [Streptomyces albus J1074]
          Length = 285

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 64/162 (39%), Gaps = 1/162 (0%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           + + VR+G     A+   VG++     +E   V      G  ++ ++         + +S
Sbjct: 119 LAQEVRSGRQPVAALLHAVGEARGLGGAEAG-VTAAARFGGDVAGALREAAGAPGAEGLS 177

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
             +    V    G  L+  +  L+  LR  ++  A + A    A+++  ++ +LP     
Sbjct: 178 GLAACWEVAVDRGAGLASGVERLAAALRAERDQAADLAAQLAGARSTVLMLAALPLLGLV 237

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           L +      + VL++ P G   L + +A    G+     ++ 
Sbjct: 238 LGWAMGADPLRVLLHTPAGLACLLMGSALESAGLWWALGIVR 279


>gi|291296512|ref|YP_003507910.1| type II secretion system protein [Meiothermus ruber DSM 1279]
 gi|290471471|gb|ADD28890.1| type II secretion system protein [Meiothermus ruber DSM 1279]
          Length = 406

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 51/157 (32%), Gaps = 10/157 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72
            D       +   + AGLP+  A+A++  Q+         + +      G + SE++S+ 
Sbjct: 65  KDLAIFSRQLATMLNAGLPIVQALAILERQTEKKKFQSILKEIRTEVEGGANFSEALSKH 124

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    +     +    +  G L   L  L+  L +   ++ K+++          +
Sbjct: 125 SL------FTRLYINLVRAGETSGTLDAILDRLATFLENELALRGKIRSAMTYPA---IV 175

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
                     L+    P +  +L        LL  A 
Sbjct: 176 FVFAIGVTYFLLTGIVPQFAQILTGLGSELPLLTRAL 212


>gi|310779619|ref|YP_003967952.1| Type II secretion system F domain protein [Ilyobacter polytropus
           DSM 2926]
 gi|309748942|gb|ADO83604.1| Type II secretion system F domain protein [Ilyobacter polytropus
           DSM 2926]
          Length = 400

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/171 (10%), Positives = 52/171 (30%), Gaps = 13/171 (7%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +  G+ +     V+  Q     ++     + +    G S+S ++S+ 
Sbjct: 61  KDIAVFTRQLSTMLEGGVGLLRCFTVLEKQCEKPKLKVVVGEIRQDISSGKSISYALSKH 120

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +             +    +  G L   L  +++     + +K K++   +       +
Sbjct: 121 PQ-----YFDSLYVSMVKAGEASGALDTILNRIAQSQEKAEEIKGKIRTAMIYPS---IV 172

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA----FMLIGIMVM 179
           +      V  L+ F  P ++ +  +       L +       +       +
Sbjct: 173 LVLSFTIVFLLMSFVIPNFVVLFTDTGVPMPSLTLFVIGISKWFNKNWYWI 223



 Score = 42.4 bits (98), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/129 (10%), Positives = 40/129 (31%), Gaps = 7/129 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+P+  A  ++     + +  E  R ++ +                 P 
Sbjct: 269 FSRTLETLLDSGVPILSAFDIVADTVGNILMGESIREVKDKIKSGHTIAKPLEESGSFPP 328

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G L + L+ L+      + ++  ++      +    +I +L  
Sbjct: 329 -----MVVNMVDVGEESGELVKMLSKLADFNE--RELEETIRDSLAAFEPMMILIMALTV 381

Query: 139 CVSTLVYFT 147
            V  +  + 
Sbjct: 382 GVIVVAMYL 390


>gi|73668275|ref|YP_304290.1| transporter [Methanosarcina barkeri str. Fusaro]
 gi|72395437|gb|AAZ69710.1| transporter [Methanosarcina barkeri str. Fusaro]
          Length = 660

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 55/145 (37%), Gaps = 4/145 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  K  +  P+ L  +     +G+ +++++ +I       +  E +++ E    G S S+
Sbjct: 445 RMRKIDEKMPDFLKSLSSMNESGIMLANSLKIISESKMGILSKELKKLKEDLSWGTSTSK 504

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++  +   +     S    +I   ++   +L   L+  ++  R+ ++MK +         
Sbjct: 505 ALMNLENSIKTPSSSRILHIIVKANESTSDLKNVLSITAKQARNDEDMKKE----RSSTM 560

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYM 152
               I   + F V   + +      
Sbjct: 561 VVYVITIYVAFFVFLFIVYILATNF 585



 Score = 44.0 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/170 (10%), Positives = 46/170 (27%), Gaps = 4/170 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQH 60
                R A        A+  +    + G+ + D    +   S        E   V+    
Sbjct: 123 FQANNRQASIDKSMLPAITYMYALTKGGMSIYDVFRSLSRYSYIFGATAEEISYVVRDMD 182

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                  +  ++ +     E+        +     G ++E + N S   +    M  +  
Sbjct: 183 YLGKDFITSLKIAKERTPSEIFKDFVDGLIIVSSSGTITEYVKNKSEQYQGLAEMANRNL 242

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
              ++  A  ++   +   +  +V      +   L    +   +L     
Sbjct: 243 LQRLDVLAEIYVTALVAGPLFVMVTLVVLQFF--LPASAQILYMLIYIIL 290


>gi|312143781|ref|YP_003995227.1| Type II secretion system F domain [Halanaerobium sp. 'sapolanicus']
 gi|311904432|gb|ADQ14873.1| Type II secretion system F domain [Halanaerobium sp. 'sapolanicus']
          Length = 403

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 53/161 (32%), Gaps = 6/161 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                   + AG+ + DA+ ++  QS    ++    +V +    G+SL++++S+     P
Sbjct: 70  FSQQFAAMIDAGISLVDALNILADQSDHKHLKKVLMQVRDDVETGVSLADAVSKHPDSFP 129

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                   + +    + GG L   L  L+     +  + + V++          +   + 
Sbjct: 130 -----ELYSQLIRAGESGGVLDTILNKLANHYDRQHELNSMVKSALYYPAVILSVGLIVV 184

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             + T V     G              + +A +        
Sbjct: 185 IFLVTQVVPQFVGMFQDFGTALPLPTRMLLAISSFAQSYWW 225


>gi|239500937|ref|ZP_04660247.1| pilin biogenesis protein [Acinetobacter baumannii AB900]
          Length = 408

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/193 (8%), Positives = 54/193 (27%), Gaps = 15/193 (7%)

Query: 1   MKHLIKKRTAKFL---------DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51
           ++ + +KR               D       +   ++AG+P+     ++     +P   E
Sbjct: 47  VRTIREKRKNILEGLFKKKVTTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMRE 106

Query: 52  FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
               +      G + + ++ +  ++            +    +  G L   L  ++    
Sbjct: 107 VVLGIKGEVEGGSTFASALRKYPQH-----FDNLFCSLVESGEQSGALETMLDRVAIYKE 161

Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             + +K K++           +   +   +   V             D      + V  +
Sbjct: 162 KSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMS 221

Query: 171 FMLIGIMVMRLMI 183
             +     + ++ 
Sbjct: 222 KWMQEYWFIMIIA 234



 Score = 36.6 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 40/129 (31%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +  +  AG+P+ DA+    G +++ +      ++ E    G  L  ++    R     
Sbjct: 280 RTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVATGQQLQFAMRVSNR----- 334

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +  +    +  G L   L  ++    +  +         ME    A +   +   
Sbjct: 335 -FPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGL 393

Query: 140 VSTLVYFTS 148
           V  +     
Sbjct: 394 VIAMYLPIF 402


>gi|170768577|ref|ZP_02903030.1| type IV pilus assembly protein PilC [Escherichia albertii TW07627]
 gi|170122681|gb|EDS91612.1| type IV pilus assembly protein PilC [Escherichia albertii TW07627]
          Length = 400

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 58/182 (31%), Gaps = 22/182 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+++A++V Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSESLALLVEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWAEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPVIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +   G +L+      ++   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIITLADFSSHWGWLLILFGFLLVVANKLLM 235

Query: 180 RL 181
           R 
Sbjct: 236 RR 237


>gi|121603665|ref|YP_980994.1| general secretion pathway protein F [Polaromonas naphthalenivorans
           CJ2]
 gi|120592634|gb|ABM36073.1| general secretion pathway protein F [Polaromonas naphthalenivorans
           CJ2]
          Length = 412

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 61/177 (34%), Gaps = 14/177 (7%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
                   I   V +GLP+  A+  +  +S + P R     +    + G   + ++++  
Sbjct: 74  ALAIWTRQIAGLVTSGLPLERALTALADESENIPQRHLVANLRAEVNGGTPFATALAQHP 133

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R     E S     +    +  GNL   L  L+  L   + +KA++   ++       + 
Sbjct: 134 R-----EFSNTYCAVVGAGEHSGNLGMVLERLADDLEQSQELKAQLVGAALYPA---IVT 185

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI-----GIMVMRLMINF 185
                 V  L+ +  P    V     R   +L V    +       G +++  +I  
Sbjct: 186 LVAIAIVMFLLGYVVPQVAQVFAGSKRALPVLTVMMLGLAGFVRNQGWLILLTLITI 242



 Score = 35.9 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 39/130 (30%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       S+          +     G  L+ ++S   R+  
Sbjct: 281 FAGTLAMLAGAGVPILKALQAAADTLSNRAMRADALDALVLVREGTPLASALSHKKRFPG 340

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                   ++ +   +  G L   L   +R L      +A   A  +E      +   + 
Sbjct: 341 ------LLSMFARLGEQTGQLPLMLDRAARQLGTEVQRRAMQLATLLEPLLIVAMGLVVM 394

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 395 LIVLAVLLPI 404


>gi|196233098|ref|ZP_03131946.1| type II secretion system protein [Chthoniobacter flavus Ellin428]
 gi|196222905|gb|EDY17427.1| type II secretion system protein [Chthoniobacter flavus Ellin428]
          Length = 362

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 56/161 (34%), Gaps = 6/161 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
             + +   + AGL + +++ V+  +     +R     +      G SLS++++   R   
Sbjct: 129 FTEQLAHLLGAGLTLDESLNVLAQRLRQPRLRGLSSTLHRALIDGRSLSQALAEFPRIFT 188

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G L + L  LS  L   ++++ KV+   +           L 
Sbjct: 189 P-----LYVNLVSAGEASGALPKILMRLSEHLSALQDLRDKVRGALLYPAVLIVAGIGLV 243

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
               T++      + +       G   + ++  ++++    
Sbjct: 244 VAFMTVMVPKLTTFFHGTGQTLPGPTQMLISINYVIVHYWW 284


>gi|281357007|ref|ZP_06243497.1| Type II secretion system F domain protein [Victivallis vadensis
           ATCC BAA-548]
 gi|281316565|gb|EFB00589.1| Type II secretion system F domain protein [Victivallis vadensis
           ATCC BAA-548]
          Length = 419

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/168 (10%), Positives = 43/168 (25%), Gaps = 7/168 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             +       +   + AGLP+  ++  +  Q+ +P              G     +    
Sbjct: 76  RKELTVVTRQLAILLSAGLPLIRSLHTLERQAKNPAVKIVLSKTAETVEGG----ATFAE 131

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 +        +    +  G +   L  L+  +     +  KV++  +       I
Sbjct: 132 ALAQHPRSFDKLYLNMVRAGEASGAMEIILDRLASFMEKAARISGKVKSAMIYPCVVLTI 191

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVAAAFMLIGIM 177
                  +   +          L+          LL +  +  L+   
Sbjct: 192 ALLAVVGLMIFIVPNFQKIFTELLGPNEPLPDITLLVMGISNTLVSHW 239



 Score = 35.5 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/134 (11%), Positives = 44/134 (32%), Gaps = 7/134 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                   +   + +G+PV +A++++     ++ V S  ++V +    G  +++ +S   
Sbjct: 284 AISRFSRTLGTLMSSGVPVLNALSIVKETSGNETVASAIQKVHDAVKEGEGIAKPLS--- 340

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +        +    +  G L E L  ++    +  +         +E      + 
Sbjct: 341 ---GTKIFPEMVISMVEVGEETGKLPEMLDKIANTYDEEVDNAVSALTSMIEPLMIVLLA 397

Query: 134 GSLPFCVSTLVYFT 147
             +   V  L    
Sbjct: 398 VIVGGIVIALFLPL 411


>gi|148974880|ref|ZP_01811860.1| Flp pilus assembly protein TadC [Vibrionales bacterium SWAT-3]
 gi|145965389|gb|EDK30638.1| Flp pilus assembly protein TadC [Vibrionales bacterium SWAT-3]
          Length = 288

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 60/158 (37%), Gaps = 4/158 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIET 58
           +    K          P  LD++   V  G+ +  ++  +  +    D   +   RV   
Sbjct: 133 VSARGKANIKHISSRLPFLLDLMNVCVHTGMTIESSLEYLAKELHSIDSNLAHVVRVTVE 192

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +   + L +++      +P  E   F   +    Q G ++   LA L+  +R+   M  +
Sbjct: 193 RSRLVGLEKALEEFYALVPTSESQSFVMTMVQSLQFGSSVGPVLATLATDIRELNMMDLE 252

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
            +   M AK S  +I  +   +  L+    PG + +L+
Sbjct: 253 ERIGKMGAKMSIPLIAFIMVPIVVLIAA--PGILRMLM 288


>gi|87309424|ref|ZP_01091559.1| type IV pilus biogenesis protein PilC [Blastopirellula marina DSM
           3645]
 gi|87287732|gb|EAQ79631.1| type IV pilus biogenesis protein PilC [Blastopirellula marina DSM
           3645]
          Length = 397

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 63/176 (35%), Gaps = 8/176 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           D     + +   V  G+ +S A+  +   + ++ +++    +  +   G   S ++ +  
Sbjct: 60  DIIYFTNQLAVMVDTGINLSTAIESVSSQEKNEALKTLLVDIRRSVESGEDFSAALGKYP 119

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           ++      +     +   S+  G L E L  ++  +R+   ++ KV+A          + 
Sbjct: 120 KH-----FNKTYISLVKASEQTGMLGEMLERIAAYMRNEVEIRNKVRAALAYPAVMVVLA 174

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR--LMINFDV 187
            ++   + T V                   ++ +AA+ +L+         +I   V
Sbjct: 175 TAVTIFLLTYVLPKFTPLFERKGAKLPTPTIIMMAASDILLDYWWAWLAAIIAVSV 230


>gi|302559126|ref|ZP_07311468.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
 gi|302476744|gb|EFL39837.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
          Length = 319

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/174 (10%), Positives = 63/174 (36%), Gaps = 2/174 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +   +  + +  ++   + +  A+      ++  +R     +++       L E++ ++ 
Sbjct: 107 EALASWTESLRDTIAGAVGLEQAIPASARAAAPVLRPHLDALVDRLRSRTPLPEALQQLA 166

Query: 74  RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + + ++  G  L + L  L++  R+  +M+ +V A     + S  I
Sbjct: 167 DEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQRASTRRSVQI 226

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + ++       +   +  ++        G ++L        +G   +R +   +
Sbjct: 227 VVAVSIAFVLGLSVFNRDFVEP-YGTAVGQLVLACVCGLFALGFWWLRKLSTIE 279


>gi|218295664|ref|ZP_03496460.1| type II secretion system protein [Thermus aquaticus Y51MC23]
 gi|218243823|gb|EED10350.1| type II secretion system protein [Thermus aquaticus Y51MC23]
          Length = 391

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/157 (10%), Positives = 49/157 (31%), Gaps = 5/157 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            D       +   + AGL +  ++A++  Q+ +    E  +      +   +   ++   
Sbjct: 50  KDLAIFSRQLATMIGAGLTLLQSLAILEKQTENKKFREIIK-----EVRTDIEGGMAFSD 104

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +  S     +    +  G L   L  L+  L     ++ K+++            
Sbjct: 105 ALAKHKLFSRLYVNLVRAGETSGGLDVILDRLAAFLEKELELRGKIRSAMTYPTIVFVFA 164

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             + + + T +       +  L ++        +A +
Sbjct: 165 VGVAYFLLTGIVPQFAQILTDLGSELPLLTRFLIAVS 201



 Score = 37.8 bits (86), Expect = 0.72,   Method: Composition-based stats.
 Identities = 11/141 (7%), Positives = 38/141 (26%), Gaps = 8/141 (5%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R              +   + +G+ + +A+ +  G + + V  E     + +        
Sbjct: 250 RKTAIAR----FSRTLALLLASGVNILEALDITKGTAGNSVVEEIINTAKNKVQQGEP-- 303

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
               +             + +    +  G L   L+ ++       +        ++E  
Sbjct: 304 --LNLTLAQHPFVFPPMVSSMVAIGEETGALDTLLSKIADFYEREVDEAVASLTAAIEPL 361

Query: 128 ASAWIIGSLPFCVSTLVYFTS 148
              ++   +   V+ +     
Sbjct: 362 MIIFLGVIVGMIVAGMFLPLF 382


>gi|53717648|ref|YP_106634.1| general secretory pathway protein F [Burkholderia pseudomallei
           K96243]
 gi|53723931|ref|YP_104302.1| general secretion pathway protein F [Burkholderia mallei ATCC
           23344]
 gi|67641922|ref|ZP_00440687.1| general secretion pathway protein F [Burkholderia mallei GB8 horse
           4]
 gi|76810282|ref|YP_331638.1| general secretion pathway protein F [Burkholderia pseudomallei
           1710b]
 gi|121599922|ref|YP_994794.1| general secretion pathway protein F [Burkholderia mallei SAVP1]
 gi|124385216|ref|YP_001027863.1| general secretion pathway protein F [Burkholderia mallei NCTC
           10229]
 gi|126449176|ref|YP_001082189.1| general secretion pathway protein F [Burkholderia mallei NCTC
           10247]
 gi|126454081|ref|YP_001064294.1| general secretion pathway protein F [Burkholderia pseudomallei
           1106a]
 gi|167000475|ref|ZP_02266289.1| general secretion pathway protein F [Burkholderia mallei PRL-20]
 gi|167736417|ref|ZP_02409191.1| general secretion pathway protein F [Burkholderia pseudomallei 14]
 gi|167813492|ref|ZP_02445172.1| general secretion pathway protein F [Burkholderia pseudomallei 91]
 gi|167822033|ref|ZP_02453504.1| general secretion pathway protein F [Burkholderia pseudomallei 9]
 gi|167892118|ref|ZP_02479520.1| general secretion pathway protein F [Burkholderia pseudomallei
           7894]
 gi|167900629|ref|ZP_02487834.1| general secretion pathway protein F [Burkholderia pseudomallei NCTC
           13177]
 gi|167908853|ref|ZP_02495944.1| general secretion pathway protein F [Burkholderia pseudomallei 112]
 gi|167921123|ref|ZP_02508214.1| general secretion pathway protein F [Burkholderia pseudomallei
           BCC215]
 gi|217423903|ref|ZP_03455403.1| general secretion pathway protein F [Burkholderia pseudomallei 576]
 gi|226193102|ref|ZP_03788712.1| general secretion pathway protein F [Burkholderia pseudomallei
           Pakistan 9]
 gi|237814401|ref|YP_002898852.1| general secretion pathway protein F [Burkholderia pseudomallei
           MSHR346]
 gi|242314746|ref|ZP_04813762.1| general secretion pathway protein F [Burkholderia pseudomallei
           1106b]
 gi|254174966|ref|ZP_04881627.1| general secretion pathway protein F [Burkholderia mallei ATCC
           10399]
 gi|254186540|ref|ZP_04893057.1| general secretion pathway protein F [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254194735|ref|ZP_04901166.1| general secretion pathway protein F [Burkholderia pseudomallei S13]
 gi|254201376|ref|ZP_04907740.1| general secretion pathway protein F [Burkholderia mallei FMH]
 gi|254206718|ref|ZP_04913069.1| general secretion pathway protein F [Burkholderia mallei JHU]
 gi|254259573|ref|ZP_04950627.1| general secretion pathway protein F [Burkholderia pseudomallei
           1710a]
 gi|254298656|ref|ZP_04966107.1| general secretion pathway protein F [Burkholderia pseudomallei
           406e]
 gi|254357383|ref|ZP_04973657.1| general secretion pathway protein F [Burkholderia mallei
           2002721280]
 gi|52208062|emb|CAH33992.1| general secretory pathway protein F [Burkholderia pseudomallei
           K96243]
 gi|52427354|gb|AAU47947.1| general secretion pathway protein F [Burkholderia mallei ATCC
           23344]
 gi|76579735|gb|ABA49210.1| general secretion pathway protein F [Burkholderia pseudomallei
           1710b]
 gi|121228732|gb|ABM51250.1| general secretion pathway protein F [Burkholderia mallei SAVP1]
 gi|124293236|gb|ABN02505.1| general secretion pathway protein F [Burkholderia mallei NCTC
           10229]
 gi|126227723|gb|ABN91263.1| general secretion pathway protein F [Burkholderia pseudomallei
           1106a]
 gi|126242046|gb|ABO05139.1| general secretion pathway protein F [Burkholderia mallei NCTC
           10247]
 gi|147747270|gb|EDK54346.1| general secretion pathway protein F [Burkholderia mallei FMH]
 gi|147752260|gb|EDK59326.1| general secretion pathway protein F [Burkholderia mallei JHU]
 gi|148026447|gb|EDK84532.1| general secretion pathway protein F [Burkholderia mallei
           2002721280]
 gi|157808490|gb|EDO85660.1| general secretion pathway protein F [Burkholderia pseudomallei
           406e]
 gi|157934225|gb|EDO89895.1| general secretion pathway protein F [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160696011|gb|EDP85981.1| general secretion pathway protein F [Burkholderia mallei ATCC
           10399]
 gi|169651485|gb|EDS84178.1| general secretion pathway protein F [Burkholderia pseudomallei S13]
 gi|217392966|gb|EEC32988.1| general secretion pathway protein F [Burkholderia pseudomallei 576]
 gi|225934702|gb|EEH30679.1| general secretion pathway protein F [Burkholderia pseudomallei
           Pakistan 9]
 gi|237503308|gb|ACQ95626.1| general secretion pathway protein F [Burkholderia pseudomallei
           MSHR346]
 gi|238522937|gb|EEP86379.1| general secretion pathway protein F [Burkholderia mallei GB8 horse
           4]
 gi|242137985|gb|EES24387.1| general secretion pathway protein F [Burkholderia pseudomallei
           1106b]
 gi|243063664|gb|EES45850.1| general secretion pathway protein F [Burkholderia mallei PRL-20]
 gi|254218262|gb|EET07646.1| general secretion pathway protein F [Burkholderia pseudomallei
           1710a]
          Length = 405

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 69/188 (36%), Gaps = 17/188 (9%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +   + +R              +   + AGLP+ +A+AV+  Q+  D +R     +    
Sbjct: 59  LGRKLSQREQAI------LTRQLASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEV 112

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G SL+ ++++  R     +       +    +  G L   L+ L+  + +R  +K K+
Sbjct: 113 LGGHSLANALTQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEERNALKQKI 167

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIM 177
                       I   +   V+ L+ +  P  +NV  +  +   +L +   A    +   
Sbjct: 168 LLAFTYPAIVTVIAFGI---VTFLLSYVVPQVVNVFASTKQQLPVLTIVMMALSDFVRHW 224

Query: 178 VMRLMINF 185
              ++I  
Sbjct: 225 WWAILIGI 232


>gi|302343414|ref|YP_003807943.1| Type II secretion system F domain protein [Desulfarculus baarsii
           DSM 2075]
 gi|301640027|gb|ADK85349.1| Type II secretion system F domain protein [Desulfarculus baarsii
           DSM 2075]
          Length = 305

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 64/147 (43%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++ L  +R+A      P+ LD++V +V +GL +  AV  +      SS  +  E      
Sbjct: 146 LEKLALRRSALIARQMPSMLDLLVIAVESGLGLDAAVQRVSRDLAASSPVLAHELAIFSL 205

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              LG +  +++  + +   + E++    ++    + G ++  ++   +  LR ++  K 
Sbjct: 206 ELKLGAARGDALRNLAKRCGVDEMAGLVAMLIQADRFGVSIGRSIRVFADDLRTKRRQKL 265

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + QA  +  K    ++  +   +  ++
Sbjct: 266 EEQAAKIPLKLLFPVLFLIFPAIMAVM 292


>gi|296133931|ref|YP_003641178.1| Type II secretion system F domain protein [Thermincola sp. JR]
 gi|296032509|gb|ADG83277.1| Type II secretion system F domain protein [Thermincola potens JR]
          Length = 294

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 63/157 (40%), Gaps = 6/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--PVRSEFRRVIET 58
           ++  +K +  + L + P  ++ +   + AGLP S AV  +V  S    P+  E   V+  
Sbjct: 139 LEKKLKMKKRQILIELPGFINTLALLINAGLPFSSAVHKVVHDSDPDRPLYKEMNYVLAD 198

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKA 117
              G  + ++     R   + E++ F + I      G   +   L  L++   +++   A
Sbjct: 199 IGAGKPIHQAYEDFARRCRIPEITRFVSTIIQNLNRGNGDIVYVLRTLAQEAWEKRKDIA 258

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           + Q     +K    +   +   ++  +   +P  M +
Sbjct: 259 RKQGEEASSKL---VFPMVMVFIAVAIIVLAPAIMTM 292


>gi|258515694|ref|YP_003191916.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
           771]
 gi|257779399|gb|ACV63293.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 294

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 64/154 (41%), Gaps = 2/154 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I+ R  +   +  + +D++   + AGL +S ++  +       +  EF+       
Sbjct: 137 INMKIRARQKRAQLEILDFIDLLTNGIDAGLDLSTSIDRVTKHMPGILAEEFQYAFVEIE 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG   SE++  M + + +++V+     I    + G  +++ L + +  ++      A   
Sbjct: 197 LGRRRSEALKNMAQRLDIKDVNLLVDAIIQAERTGVPIAKVLKDQANRIKQDFRTNALKM 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           A +   K  A +I  +   +  +V    P ++ +
Sbjct: 257 AQAASIKMLAPMILFILPALFIVV--LGPPFIGI 288


>gi|326445375|ref|ZP_08220109.1| type II secretion system protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 309

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 60/171 (35%), Gaps = 3/171 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +     +  +      G+ +   +   +      +R E + ++  +  G    ++     
Sbjct: 117 EAIEEWVRRMSDIHTVGVSLEATIQRSLETVPKAIREEVQLLVSREQSGWVPQDAYKAFA 176

Query: 74  RYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +    V   + ++ +     G  LS+A+  L+  L+     + +V+A   + + +   
Sbjct: 177 DDLNDALVDEVAALLILHVEDRGSGLSKAMRELAEALQHEVLARREVEADRQKPRTNDRW 236

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           +      +   +   S  Y+    N   G  +LG  A   ++  + MR M 
Sbjct: 237 VTMFCLGIFG-ITALSGTYVEP-YNTVTGQFVLGFVAVSFVLVKVWMRRMA 285


>gi|226951823|ref|ZP_03822287.1| type 4 fimbrial assembly protein [Acinetobacter sp. ATCC 27244]
 gi|226837363|gb|EEH69746.1| type 4 fimbrial assembly protein [Acinetobacter sp. ATCC 27244]
          Length = 408

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/188 (9%), Positives = 52/188 (27%), Gaps = 15/188 (7%)

Query: 1   MKHLIKKRTAKFL---------DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51
           +K++ +KR               D       +   ++AG+P+     ++     +P   E
Sbjct: 47  IKNIREKRKNILEGLMKKKVTTLDITVFTRQLATMMKAGVPLVQGFEIVAEGLENPSMRE 106

Query: 52  FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
               +      G + + ++ +  +             +    +  G L   L  ++    
Sbjct: 107 VVLGLKGEVEGGNTFAGALRKYPQ-----YFDNLFCSLVESGEQSGALETMLDRVAIYKE 161

Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             + +K K++           +   +   +   V        +    D      + V  +
Sbjct: 162 KSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMS 221

Query: 171 FMLIGIMV 178
             +     
Sbjct: 222 VWMQEYWF 229



 Score = 39.3 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 38/128 (29%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +  +  AG+P+ DA+    G +++ V  E    I          +   R+    P   
Sbjct: 280 RTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVATGQQLQFAMRVSNRFP--- 336

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
               +  +    +  G L   L  ++    +  +         ME    A +   +   V
Sbjct: 337 --SMAIQMVAIGEESGALDSMLDKVATHFENEVDNAVDGLTAMMEPLIMAILGVLVGGLV 394

Query: 141 STLVYFTS 148
             +     
Sbjct: 395 IAMYLPIF 402


>gi|37680188|ref|NP_934797.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
 gi|37198935|dbj|BAC94768.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
          Length = 293

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 63/148 (42%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIE 57
           +     +   K     P+A+D++V  V +GL ++ A   +     +   P+  +FR    
Sbjct: 134 LNLNADRYRKKLKQSAPDAIDLLVLCVESGLSLNRAFERVARYLQEQHAPMAEQFRVTSA 193

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              L    +++++ +     + E+   +T +++  + G  L++ L  +S   R ++ +  
Sbjct: 194 ELDLLNDRTQALNNLSWRTGIPELHTLATTLTMADKYGSPLADTLRQISEDARRQRALDI 253

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A  +  K +   +  +   +  +V 
Sbjct: 254 EERAGKLPGKITLIQMTMIMLPMLVMVI 281


>gi|258652940|ref|YP_003202096.1| type II secretion system protein [Nakamurella multipartita DSM
           44233]
 gi|258556165|gb|ACV79107.1| type II secretion system protein [Nakamurella multipartita DSM
           44233]
          Length = 302

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 64/181 (35%), Gaps = 2/181 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            ++R    LD      + +  ++     + +A+      +S  +R    R++      + 
Sbjct: 94  AEQRQIARLDALVAWTESLRDTIAGHHSLENALPSSAVHASPLIRPALLRLVGQIRARVP 153

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAKVQALS 123
           +  ++  +   +           + + ++     L + L++L+   R+   M+ ++ A  
Sbjct: 154 VDRALVMLADELNDPSADLVIAELVLSAKRRGDGLQQRLSSLATTAREELEMRRRIFADR 213

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E +    II  +    + L+      Y+    +   G ++L +           +R + 
Sbjct: 214 AEIRRGTQIIVVVTVVFAGLLVVFGGDYVRP-YSTLSGQVVLAIVVGIFAAAFAWLRRLA 272

Query: 184 N 184
           +
Sbjct: 273 D 273


>gi|149909542|ref|ZP_01898196.1| bipartite nuclear localization signal containing protein, similarto
           TadC [Moritella sp. PE36]
 gi|149807447|gb|EDM67398.1| bipartite nuclear localization signal containing protein, similarto
           TadC [Moritella sp. PE36]
          Length = 296

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 72/159 (45%), Gaps = 4/159 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +    K+ T K  +  P  LD++   V+ G+ +  A++ +  + ++  +     +++   
Sbjct: 139 LNLRAKQLTEKISNKLPYLLDLMAVCVQTGMTLESAISYLSKEMTEFDKDLTNVLVKTND 198

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +   + L+ ++  +   +P  E+  F   +    Q G ++S+ L  LS  +R  + +  +
Sbjct: 199 RARIVGLAMALDELYLRVPSNEMRSFVMTLKQSLQFGSSISQVLTTLSGDIRQVQILGLE 258

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
            +   + AK S  +I  +   V  L+    PG M ++IN
Sbjct: 259 EKIGKLAAKMSIPLIVFIMVPVVILIAA--PGIMRMMIN 295


>gi|330811031|ref|YP_004355493.1| type II secretion system protein; membrane protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379139|gb|AEA70489.1| putative type II secretion system protein; putative membrane
           protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 321

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 65/158 (41%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +    + R  +    FP+ALD++V  V +GL +   +  +  + S     +  E   V  
Sbjct: 160 VGKRKQARQGRLRAAFPDALDLMVVCVESGLALPTTIERVAEEMSVSQVELAEELALVNA 219

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G++ +E++ ++     L+++    ++++   + G ++++ L   +   RDR+   A
Sbjct: 220 QIRAGITSTEALKQLAVRTGLEDIQGLVSLLAQSIRFGTSVADTLRIYADEFRDRRTQAA 279

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +     +  K    +I  L       +    P  + V 
Sbjct: 280 EEMGAKIGTKLIFPLIFCLWPS--FFLVAIGPAMIGVF 315


>gi|253689938|ref|YP_003019128.1| type II secretion system protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756516|gb|ACT14592.1| type II secretion system protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 401

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 50/154 (32%), Gaps = 11/154 (7%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
            +     +  +   + AGLP+ +A+ ++  Q      R   R V      G SLSE++  
Sbjct: 58  REQLGELIKQLAALLHAGLPLLEALKLVSEQHERPGWRCVLRDVRTRVAQGNSLSEALQE 117

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P+         +    +L G L      L++    +  ++ KV           +
Sbjct: 118 YPHIFPV-----LYHSLIAVGELTGKLDTCCLQLAQQQEKQSRLQQKVIKALRYP---CF 169

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHM 163
           ++         ++    P +  +    + P    
Sbjct: 170 VLAIAVLVSMMMLTLVLPEFATLYSSFDTPLPWF 203


>gi|149909167|ref|ZP_01897824.1| putative type IV pilus protein [Moritella sp. PE36]
 gi|149807691|gb|EDM67637.1| putative type IV pilus protein [Moritella sp. PE36]
          Length = 294

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 63/158 (39%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +K   +    +     P+ALD++V  V +GL +      +  +    S  +  E+     
Sbjct: 133 LKWRARTVNYRIALALPDALDLMVICVESGLTLEAVFQRVGHEMTAVSPELSREWLITEA 192

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              L  S   +++ + +   L EV      +S   + G  ++  +  ++   R  + ++ 
Sbjct: 193 ELRLLDSRLTALNNLAKRTDLVEVENMVIALSQAEKYGSKIAPTMRLIASDSRQYQYLRL 252

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +   + AK S  ++  +   V  L+   +P  + +L
Sbjct: 253 EEKVGKIPAKMSLPVVVLIMLPVVVLI--VAPTIIALL 288


>gi|121534460|ref|ZP_01666283.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
 gi|121306953|gb|EAX47872.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
          Length = 407

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 9/163 (5%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSE 67
               + D           + AGLP+ + +++++ Q+ +  ++S  + V      G +LS 
Sbjct: 60  RRVTVKDLAVFCRQFATMIDAGLPLLNCLSILIDQTYNPKLKSAVQDVYRKVQEGETLSR 119

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++    +  P+         +    +LGG L E L  L+        +  KV++  +   
Sbjct: 120 ALGNHPQVFPV-----IMVSMVEAGELGGVLDEVLNRLAVHFEKEHKLNEKVKSALVYPA 174

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
               +I      V+ ++ F  P +M +  N      LL     
Sbjct: 175 ---VVIAMAALSVTFILTFVFPTFMTLFNNLKVELPLLTRVLL 214



 Score = 40.9 bits (94), Expect = 0.075,   Method: Composition-based stats.
 Identities = 13/134 (9%), Positives = 38/134 (28%), Gaps = 5/134 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                  ++   VR G+P+  A+ V+   +++        +        S+ + +     
Sbjct: 269 AIARFSRMLGTLVRGGVPIISALDVVKKTTANWTM-----IKALTSAQASIRDGLGLAAP 323

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                  +     +    +  G L + L  ++       +      +  +E      +  
Sbjct: 324 LGASSIFTPMVVQMVAIGEETGELDKMLEKIADFYESDVDDMVSRLSSMLEPLLIGILGA 383

Query: 135 SLPFCVSTLVYFTS 148
            +   V  +V    
Sbjct: 384 VIGLIVIAVVLPLF 397


>gi|167584966|ref|ZP_02377354.1| type II secretion system protein [Burkholderia ubonensis Bu]
          Length = 324

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 70/162 (43%), Gaps = 4/162 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   I  R     +DFP+ALD++   V AGL +  A+  +  +    S  V SE   ++ 
Sbjct: 156 LSRRIASRQRVIFEDFPDALDLLTVCVEAGLSLDSALLKVCEELQFRSPIVASELDLMLL 215

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +     ++++  F  ++    + G ++ ++L  LS +LR R+ M+A
Sbjct: 216 EMRSGFTKEAALRNLALRTGVEDIESFCAMLIQADRFGTSIGDSLRVLSDMLRTRRRMRA 275

Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158
           + +A  +        I    P  ++ L+         +L+  
Sbjct: 276 EERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRILLPT 317


>gi|167843646|ref|ZP_02469154.1| general secretion pathway protein F [Burkholderia pseudomallei
           B7210]
          Length = 405

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 69/188 (36%), Gaps = 17/188 (9%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +   + +R              +   + AGLP+ +A+AV+  Q+  D +R     +    
Sbjct: 59  LGRKLSQREQAI------LTRQLASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEV 112

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G SL+ ++++  R     +       +    +  G L   L+ L+  + +R  +K K+
Sbjct: 113 LGGHSLANALTQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEERNALKQKI 167

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIM 177
                       I   +   V+ L+ +  P  +NV  +  +   +L +   A    +   
Sbjct: 168 LLAFTYPAIVTVIAFGI---VTFLLSYVVPQVVNVFASTKQQLPVLTIVMMALSDFVRHW 224

Query: 178 VMRLMINF 185
              ++I  
Sbjct: 225 WWAILIGI 232


>gi|126441326|ref|YP_001057064.1| general secretion pathway protein F [Burkholderia pseudomallei 668]
 gi|254184075|ref|ZP_04890666.1| general secretion pathway protein F [Burkholderia pseudomallei
           1655]
 gi|126220819|gb|ABN84325.1| general secretion pathway protein F [Burkholderia pseudomallei 668]
 gi|184214607|gb|EDU11650.1| general secretion pathway protein F [Burkholderia pseudomallei
           1655]
          Length = 405

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 69/188 (36%), Gaps = 17/188 (9%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +   + +R              +   + AGLP+ +A+AV+  Q+  D +R     +    
Sbjct: 59  LGRKLSQREQAI------LTRQLASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEV 112

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G SL+ ++++  R     +       +    +  G L   L+ L+  + +R  +K K+
Sbjct: 113 LGGHSLANALTQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEERNALKQKI 167

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIM 177
                       I   +   V+ L+ +  P  +NV  +  +   +L +   A    +   
Sbjct: 168 LLAFTYPAIVTVIAFGI---VTFLLSYVVPQVVNVFASTKQQLPVLTIVMMALSDFVRHW 224

Query: 178 VMRLMINF 185
              ++I  
Sbjct: 225 WWAILIGI 232


>gi|329943876|ref|ZP_08292147.1| bacterial type II secretion system protein F domain protein
           [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328531582|gb|EGF58418.1| bacterial type II secretion system protein F domain protein
           [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 292

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 61/139 (43%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R+ +   D P+ LD++  +VR+G+    AV  +      P+  E R  I +  LG++  
Sbjct: 142 RRSQQIDRDLPDFLDVLSVTVRSGMSFRPAVERVSSFHEGPLAEEMRGAIYSMRLGVTRR 201

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++          + V+ F +      +LG  L++AL ++S  +R  +  + +  A   + 
Sbjct: 202 DAFIAARDNSRSENVAIFVSAFLQAEELGTPLADALVDISSEIRRERAQQVRRAAARAQP 261

Query: 127 KASAWIIGSLPFCVSTLVY 145
           K +  +   +      L+ 
Sbjct: 262 KIAIVVTTMILPATLILIL 280


>gi|332854395|ref|ZP_08435347.1| type IV fimbrial assembly protein PilC [Acinetobacter baumannii
           6013150]
 gi|332867626|ref|ZP_08437758.1| type IV fimbrial assembly protein PilC [Acinetobacter baumannii
           6013113]
 gi|332728071|gb|EGJ59462.1| type IV fimbrial assembly protein PilC [Acinetobacter baumannii
           6013150]
 gi|332733820|gb|EGJ64967.1| type IV fimbrial assembly protein PilC [Acinetobacter baumannii
           6013113]
          Length = 408

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/177 (9%), Positives = 49/177 (27%), Gaps = 15/177 (8%)

Query: 1   MKHLIKKRTAKFL---------DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51
           ++ + +KR               D       +   ++AG+P+     ++     +P   E
Sbjct: 47  VRTIREKRKNILEGLFKKKVTTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMRE 106

Query: 52  FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
               +      G + + ++ +  ++            +    +  G L   L  ++    
Sbjct: 107 VVLGIKGEVEGGSTFASALRKYPQH-----FDNLFCSLVESGEQSGALETMLDRVAIYKE 161

Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
             + +K K++           +   +   +   V             D      + V
Sbjct: 162 KSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVV 218



 Score = 37.8 bits (86), Expect = 0.75,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 40/129 (31%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +  +  AG+P+ DA+    G +++ +      ++ E    G  L  ++    R     
Sbjct: 280 RTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVATGQQLQFAMRVSNR----- 334

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +  +    +  G L   L  ++    +  +         ME    A +   +   
Sbjct: 335 -FPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGL 393

Query: 140 VSTLVYFTS 148
           V  +     
Sbjct: 394 VIAMYLPIF 402


>gi|332158911|ref|YP_004424190.1| hypothetical protein PNA2_1271 [Pyrococcus sp. NA2]
 gi|331034374|gb|AEC52186.1| hypothetical protein PNA2_1271 [Pyrococcus sp. NA2]
          Length = 305

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 53/154 (34%), Gaps = 1/154 (0%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
              I KR  +     P+A   +  S+RAG+  S+A+  +       +  EF R +     
Sbjct: 85  NFRIIKRIEEMERALPDAFFYLAGSLRAGVSFSEALEELSTAKFGALTREFMRTVAEMKR 144

Query: 62  GLSLSESISRMV-RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           G    +++     R      +     +I    + G  +++ L  +   +R+   +K + +
Sbjct: 145 GRPTVDALRAFALRNKRSPIIYRSMMIIIEALERGAPMADVLVAVGNDVREILRIKNERK 204

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           A +          G         V      ++ +
Sbjct: 205 ASTGMQMMFFLTSGGFVGPFIVAVVSNIAKFITL 238


>gi|320449795|ref|YP_004201891.1| type 4 fimbrial assembly protein PilC [Thermus scotoductus SA-01]
 gi|320149963|gb|ADW21341.1| type 4 fimbrial assembly protein PilC [Thermus scotoductus SA-01]
          Length = 406

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/160 (10%), Positives = 50/160 (31%), Gaps = 5/160 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            D       +   + AGL +  +++++  Q+ +    E  + +        +   ++   
Sbjct: 65  KDLAIFSRQLATMLGAGLTLLQSLSILERQTENKKFREIIKKVR-----TDIEGGMAFSD 119

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +  S     +    +  G L   L  L+  L     ++ K+++            
Sbjct: 120 ALAKHKLFSRLYVNLVRAGETSGGLDLILDRLATFLEKDLELRGKIRSAMTYPVIVFVFA 179

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             + + + T +       +  L ++        +A +  L
Sbjct: 180 VGVAYFLLTGIVPQFAQILTDLGSELPLLTRFLIALSGFL 219


>gi|119716451|ref|YP_923416.1| type II secretion system protein [Nocardioides sp. JS614]
 gi|119537112|gb|ABL81729.1| type II secretion system protein [Nocardioides sp. JS614]
          Length = 310

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 63/173 (36%), Gaps = 5/173 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET-QHLGLSLSESISRM 72
           +        +   + AG  +  A+   +  +  P+  E   ++    +   S  + +   
Sbjct: 107 EALEEWTRSLSGKLTAGQSLRSALIKSLQSAPAPIEREVGLMVSRLWNNTASTEDVLRAF 166

Query: 73  VRYMPLQEVSFFSTVISV--QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
              +        ++ + +    +    LS+AL  L+  +      + ++ A   + + +A
Sbjct: 167 AEDLNDSTGDVVASQLILAASGRGQAGLSKALDALAETVASDVRARRQIAADQAKPRTTA 226

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             +  +   V  ++ FT   Y+      P G ++L V  +  +  ++ MR M 
Sbjct: 227 RTVTVITLGVLGMLAFTG-DYIEP-YGSPLGQVILAVLLSAYVATLLWMRRMA 277


>gi|325916237|ref|ZP_08178518.1| type II secretory pathway, component PulF [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325537531|gb|EGD09246.1| type II secretory pathway, component PulF [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 230

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 54/166 (32%), Gaps = 9/166 (5%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSE 67
                 D       +   +++G+P+  A+ +I  GQ +  +R+   ++      G SL E
Sbjct: 67  KKVTAKDISFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRNMVGQIRADIEGGSSLHE 126

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++SR                +    +  G L   L  ++    + + +K K++       
Sbjct: 127 AVSRHPVQ-----FDELYRNLVRAGEGAGVLETVLDTIATYKENIEALKGKIKKALFYPA 181

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
               ++       + L+ F  P + +V                 M 
Sbjct: 182 ---MVVAVALLVSAILLIFVVPQFEDVFKGFGAELPAFTQMIVNMS 224


>gi|154151443|ref|YP_001405061.1| type II secretion system protein [Candidatus Methanoregula boonei
           6A8]
 gi|153999995|gb|ABS56418.1| type II secretion system protein [Methanoregula boonei 6A8]
          Length = 349

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/175 (13%), Positives = 61/175 (34%), Gaps = 5/175 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    + R        PN    +     +G+ + +AV ++ G     +    R++     
Sbjct: 124 LDFREQSRMRNLETALPNFFRDLAGMNDSGMTLPNAVHLVAGAEYGTLSPHIRKLDNEMS 183

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+   E++ R  + +          +I+  S+ GG++SE L   +    +  N+  + +
Sbjct: 184 WGVGFVEALYRFGKSLGTPLADRSVDLIAKASKAGGDISEVLRAAANDTFEVVNLAQERR 243

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
              +       I+         ++      +++ +     G      AA+   +G
Sbjct: 244 NNML---IYVIIVIVSFTVFLFVIAVLVSSFLSTMAT--AGTAAQVTAASSKFMG 293


>gi|120553690|ref|YP_958041.1| type II secretion system protein [Marinobacter aquaeolei VT8]
 gi|120323539|gb|ABM17854.1| type II secretion system protein [Marinobacter aquaeolei VT8]
          Length = 409

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 56/171 (32%), Gaps = 6/171 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLS 66
           R A  LD+       +    +AG+P+   +  +   + S  +      +      G +++
Sbjct: 61  RKAVTLDELIVFCRQMHALTKAGIPLIRTMRGLAETTRSPVLAEVLEDITNRLEGGTTMA 120

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++    +       S     +    +  G L ++   LS IL   ++ K +V+      
Sbjct: 121 TAMQAHPK-----VFSELFIAMIHVGENTGMLDDSFKRLSEILELERDTKRRVKQALRYP 175

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
                 + +    V+ LV          L  D      + V  +  L+G  
Sbjct: 176 TFVVIALLAALMVVNFLVIPRFASVFAKLGADLPFLTHVLVGTSNFLLGYW 226



 Score = 43.2 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/132 (11%), Positives = 42/132 (31%), Gaps = 5/132 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                      ++AG+PV+ A+ V+   + +       +      + L +    S +   
Sbjct: 272 LSRFARNFATMLKAGMPVTHALTVVADATDNAWIGSHIK-----DMRLGIERGESLLRTA 326

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
              +  +     +    +  G++ + L N++    +  +   K  A S+E      +   
Sbjct: 327 RHSEMFTPLILQMIAVGEETGSVDDMLNNVADFYDEDVDYGLKRLAESIEPILIVAMGVL 386

Query: 136 LPFCVSTLVYFT 147
           +      +    
Sbjct: 387 VLILALGVFLPI 398


>gi|84496010|ref|ZP_00994864.1| putative integral membrane protein [Janibacter sp. HTCC2649]
 gi|84382778|gb|EAP98659.1| putative integral membrane protein [Janibacter sp. HTCC2649]
          Length = 288

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 65/180 (36%), Gaps = 4/180 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
              R  +           +   + AG+ +  A+   +  + DP+R E  R+        +
Sbjct: 94  ASARIDRLE-AMEEWTRSLSGVLTAGVGLEQALIATLRSTPDPIRPEVTRLASRLRARWT 152

Query: 65  LSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
             +++      +        +  + +   + G  L+  L  L+  +      + +++A  
Sbjct: 153 TEDALRAFADDLDDATGDVVAANLILGARRRGAGLASVLDALAESVAADVRARREIEADR 212

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            + +A+A  +  +   V   +  T   Y+      P G +LL +  +  +  ++ MR M 
Sbjct: 213 AKPRATARWVTLITISVLAFLALTG-QYVAP-FGTPLGQVLLVLLLSLYVATLVWMRRMT 270


>gi|325928500|ref|ZP_08189691.1| type II secretory pathway, component PulF [Xanthomonas perforans
           91-118]
 gi|325541217|gb|EGD12768.1| type II secretory pathway, component PulF [Xanthomonas perforans
           91-118]
          Length = 385

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/171 (10%), Positives = 55/171 (32%), Gaps = 6/171 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            +       +   +++G+P+  ++ +I     +  ++    ++      G SL E++S+ 
Sbjct: 45  KEIAFFSRQMATMMKSGVPIVGSLEIIGNGHKNPRMKQMVGQIRTDIEGGSSLHEAVSKH 104

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L  ++    + + +K K++           +
Sbjct: 105 PVQ-----FDELYRNLVKAGEGAGVLETVLDTIASYKENLEALKGKIKKALFYPAMVVAV 159

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
              +   +   V             +      L V A+  ++    + L++
Sbjct: 160 ALLVSSILLIWVVPQFEDVFKGFGAELPAFTQLIVNASRFMVSYWWLLLLV 210



 Score = 34.7 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 46/131 (35%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77
                  + +AG+P+ +A+ ++ G + + V      R+ E   +G  ++ S+ ++  +  
Sbjct: 254 FARTTAVTFKAGVPLVEALGIVAGATGNSVYEKAVLRMREDVSVGYPVNVSMKQVNLFPH 313

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         ++   +  G L   L  ++       N      +  +E     +I   + 
Sbjct: 314 M------VIQMTAIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLIEPLIMVFIGTVVG 367

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 368 GMVIGMYLPIF 378


>gi|260914307|ref|ZP_05920776.1| Flp pilus assembly protein TadC [Pasteurella dagmatis ATCC 43325]
 gi|260631408|gb|EEX49590.1| Flp pilus assembly protein TadC [Pasteurella dagmatis ATCC 43325]
          Length = 285

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 67/156 (42%), Gaps = 4/156 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--TQ 59
             ++K +  K + D P  +D++  +V+ G+ +  A+  +              ++    +
Sbjct: 128 NSILKSKIKKIMVDLPGFIDLVAVNVQTGISIDAALKQVAIDFKKLNPDLTYVMLRIIRK 187

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                LS ++  +   +P  EV  F +V+      G ++   L  LS  +R+ + +  + 
Sbjct: 188 SEITGLSSALQDLSISLPTTEVRMFCSVLQQSLNFGSSIYSHLIQLSADIRELQLLTIEE 247

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  ++ AK S  +I  + F +  L+   +PG M V 
Sbjct: 248 KLGTLAAKMSIPLILFIMFPIIILI--LAPGIMRVF 281


>gi|114321539|ref|YP_743222.1| general secretion pathway protein F [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227933|gb|ABI57732.1| general secretion pathway protein F [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 404

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 59/186 (31%), Gaps = 24/186 (12%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   VR+GLP+ D +  +  Q+    ++S    V      G +L++ +    
Sbjct: 66  DLALITRQMATLVRSGLPLEDVLRTVSRQTDKPRLKSLMLAVRNRVLEGHTLAQGLGDFP 125

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                              +  G+L   L  L+     R+ M+ KVQ           + 
Sbjct: 126 -----HVFPDIYRTTVAAGEKSGHLDIVLERLAEYTEGRQQMRQKVQMALFYPI---ILT 177

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG---------------VAAAFMLIGIMV 178
                   TL+ +  P  + V  +  +   LL                      ++G++V
Sbjct: 178 VMAIGVTLTLLTYVVPEVVGVFDHIGQDLPLLTQSLIVTSDFMRDYALYGLIGGIVGLLV 237

Query: 179 MRLMIN 184
           +  ++ 
Sbjct: 238 LARILR 243


>gi|157377486|ref|YP_001476086.1| general secretion pathway protein F [Shewanella sediminis HAW-EB3]
 gi|157319860|gb|ABV38958.1| general secretion pathway protein F [Shewanella sediminis HAW-EB3]
          Length = 407

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 62/183 (33%), Gaps = 18/183 (9%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            +       +   V AGLPV +A+  +  Q   D + S    V      G SL++S++  
Sbjct: 67  AELALITRQVATLVAAGLPVEEALKAVGQQCEKDRLASMIMAVRSRVVEGYSLADSMAEF 126

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G+L   L  L+     R  +K+K+    +       +
Sbjct: 127 P-----HIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRHQLKSKMTQAMIYPVVLTVV 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA------------AAFMLIGIMVMR 180
             S+   +   V     G    +  +     LL +A               ++IG ++++
Sbjct: 182 AISVIAILLAAVVPEVVGQFEHMGQELPWTTLLLIASSDFVRDYGLLVLGVIVIGFVLLK 241

Query: 181 LMI 183
            ++
Sbjct: 242 RLL 244


>gi|5670332|gb|AAD38174.2|AF152598_3 TadC [Aggregatibacter actinomycetemcomitans]
 gi|26000717|gb|AAN75213.1| TadC [Aggregatibacter actinomycetemcomitans]
          Length = 288

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 71/158 (44%), Gaps = 6/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           +  ++K +  K ++D    +D++  +V+ G+ +  A+  +       +  +     R+I 
Sbjct: 130 IGSILKAKIKKIMNDLAGFIDLVAVNVQTGISIEAALKQVATDFKTLNPDLTYVMLRIIR 189

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +   +S+++  +   +P  E+  F TV+      G ++   L  LS  +R+ + +  
Sbjct: 190 KSEI-TGMSQALQDLSVSLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSTDIREIQLLAI 248

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +  ++ AK S  +I  + F +  L    +PG M V 
Sbjct: 249 EEKLGTLSAKMSIPLILFIMFPIIIL--TLAPGVMKVF 284


>gi|296129086|ref|YP_003636336.1| Type II secretion system F domain protein [Cellulomonas flavigena
           DSM 20109]
 gi|296020901|gb|ADG74137.1| Type II secretion system F domain protein [Cellulomonas flavigena
           DSM 20109]
          Length = 309

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 57/146 (39%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   + +R A+ L + P   +++  +V AG   + A+  +V Q+   +  E  R +    
Sbjct: 154 LGRQVARREARLLAEMPTVTELLALAVSAGEGATGALERVVRQTRGELADELARTLAEAR 213

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L+ ++  +     L  ++ F+  ++V  + G  L++ L   ++ +R+         
Sbjct: 214 AGAPLTTALQTLADRTGLPALARFAEGVAVAVERGSPLADVLRAQAQDVREEGRRALMQT 273

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146
               E      ++  +         F
Sbjct: 274 GGRKEVLMMVPVVFLILPVTVLFAVF 299


>gi|14590541|ref|NP_142609.1| hypothetical protein PH0654 [Pyrococcus horikoshii OT3]
 gi|3257062|dbj|BAA29745.1| 308aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 308

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 52/153 (33%), Gaps = 1/153 (0%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
              I +R  +     P+A   +  S+RAG+  S+A+  +       +  EF R +     
Sbjct: 88  NFRIVRRIEEMERALPDAFFYLAGSLRAGVSFSEALEELSTAKFGALTREFMRTVAEMKR 147

Query: 62  GLSLSESISRMV-RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           G    +++     R      +     ++    + G  +++ L  +   +R+   +K + +
Sbjct: 148 GRPTVDALRAFALRNKKSLVIYRSMMIVIEALERGAPMADVLIAVGNDVREILRIKKERK 207

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153
           A +          G         +      ++ 
Sbjct: 208 ASTGMQMMFFLTSGGFVGPFIVAIVSKISEFIA 240


>gi|238924552|ref|YP_002938068.1| type II secretion system protein [Eubacterium rectale ATCC 33656]
 gi|238876227|gb|ACR75934.1| type II secretion system protein [Eubacterium rectale ATCC 33656]
          Length = 404

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 51/165 (30%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRM 72
            D           V AG+ + D + ++  Q+ + V     R V      G +LS+ + + 
Sbjct: 63  RDLSVFCRQFTSMVNAGVTILDTLDMLSDQTENKVMAKAIRGVHAEIQKGETLSDGLKKY 122

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P          +    +  G +  A   +S        +   ++  ++       +
Sbjct: 123 PNVFP-----DIMVSMVAAGEASGKIDVAFDRMSAHFEKSAKLNGMIKKAAVYPIIVVIV 177

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
             ++   +   V  +     N L  +  G     VA +  + G  
Sbjct: 178 AIAVVIVMLVKVIPSYSEMFNDLGTELPGITKAVVAMSDFVTGYW 222



 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 50/135 (37%), Gaps = 7/135 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +   V +GLP+ +A+ +      + + +   +   E    G+ LSE I+    + P+ 
Sbjct: 273 RTLSTLVYSGLPMIEALGITADTMKNALYKKALKNAREEVSKGVPLSEPITACGLFPPM- 331

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                 + ++   +  G+L   L  L+    +   +  +    ++E      +   +   
Sbjct: 332 -----VSHMTKIGEETGDLEGMLTRLADYYDEEVELATQTVMAAIEPMIILVLALIVGVL 386

Query: 140 VSTLVYFTSPGYMNV 154
           V+ ++      Y  +
Sbjct: 387 VAAVMAPMLSMYQAM 401


>gi|27365656|ref|NP_761184.1| type II/IV secretion system protein TadC [Vibrio vulnificus CMCP6]
 gi|27361804|gb|AAO10711.1| Type II/IV secretion system protein TadC, associated with Flp pilus
           assembly [Vibrio vulnificus CMCP6]
          Length = 293

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 63/148 (42%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIE 57
           +     +   K     P+A+D++V  V +GL ++ A   +     +   P+  +FR    
Sbjct: 134 LNLNADRYRKKLKQSAPDAIDLLVLCVESGLSLNRAFERVARYLQEQHAPMAEQFRVTSA 193

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              L    +++++ +     + E+   +T +++  + G  L++ L  +S   R ++ +  
Sbjct: 194 ELDLLNDRTQALNNLSWRTGIPELHTLATTLTMADKYGSPLADTLRQISEDARRQRALDI 253

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A  +  K +   +  +   +  +V 
Sbjct: 254 EERAGKLPGKITLIQMTMIMLPMLVMVI 281


>gi|255319718|ref|ZP_05360926.1| pilin biogenesis protein [Acinetobacter radioresistens SK82]
 gi|262380000|ref|ZP_06073155.1| general secretion pathway protein F [Acinetobacter radioresistens
           SH164]
 gi|255303247|gb|EET82456.1| pilin biogenesis protein [Acinetobacter radioresistens SK82]
 gi|262298194|gb|EEY86108.1| general secretion pathway protein F [Acinetobacter radioresistens
           SH164]
          Length = 408

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/168 (11%), Positives = 51/168 (30%), Gaps = 8/168 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQ 59
           ++ L+KKR +    D       +   ++AG+P+     ++     +P   E    +    
Sbjct: 58  LEGLMKKRVSTL--DITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMREVVLGIKAEV 115

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G + + ++ +  +             +    +  G L   L  ++      + +K K+
Sbjct: 116 EGGNTFAGALRKYPQ-----YFDNLFCSLVESGEQSGALETMLDRVAIYKEKSELLKQKI 170

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
           +           +   +   +   V        +    D      + V
Sbjct: 171 KKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTQMVV 218



 Score = 37.4 bits (85), Expect = 0.95,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 43/129 (33%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +  +  AG+P+ DA+    G +++ +      ++ E    G  L  ++    R+ P+ 
Sbjct: 280 RTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVATGQQLQFAMRASNRFPPM- 338

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +  +    +  G L   L  ++    +  +         ME    A +   +   
Sbjct: 339 -----AVQMVAIGEESGALDAMLDKVATHFENEVDNAVDGLTSMMEPLIMAILGVLVGGL 393

Query: 140 VSTLVYFTS 148
           V  +     
Sbjct: 394 VIAMYLPIF 402


>gi|303238717|ref|ZP_07325250.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
 gi|302593836|gb|EFL63551.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
          Length = 292

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 58/156 (37%), Gaps = 4/156 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRSEFRRVIET 58
           +   +KKR      DFP+ L+ +   + AG+ V  A   IV  +  +  +  E    +  
Sbjct: 136 LNEKVKKRRTSMQLDFPDFLNKLTLLINAGMTVQRAWEKIVTDNKKNSVLYEELSIAVAD 195

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G S   +     +   + E++ F +V+    + G     ++  L     +   M+ +
Sbjct: 196 IRAGKSEMSAYEDFAKRCRIPEITKFVSVVLQNIKKGNTELVSILRL--QASECWEMRKR 253

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
                 E  ++  +   +   V+ L+  T P    +
Sbjct: 254 AATRLGEEASTKMLFPMMIMFVAILIIVTVPAIFAM 289


>gi|294495979|ref|YP_003542472.1| type II secretion system F domain protein [Methanohalophilus mahii
           DSM 5219]
 gi|292666978|gb|ADE36827.1| Type II secretion system F domain protein [Methanohalophilus mahii
           DSM 5219]
          Length = 741

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 68/154 (44%), Gaps = 3/154 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
              +R  K   + P+ L  +  +   G+ + D++ ++  + +D +  E ++V      G+
Sbjct: 519 KKNRRKKKLEQNIPDLLKKLASTNETGMTLQDSIKLMSRKETDTLSKEIKKVWRDISWGV 578

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           ++++S+ R    +  Q V+   T+I+  ++  G++ + L   SR     ++MK +    S
Sbjct: 579 NINDSLVRFANRLRTQVVARSFTLITKANESSGDIGQVLLVASRDASSEQDMKRER---S 635

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           M       II         ++Y  S  ++  + +
Sbjct: 636 MSMMIYIVIIYIAFLVFVGVIYVISTTFLTEMAD 669



 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/186 (10%), Positives = 62/186 (33%), Gaps = 7/186 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQH 60
               +R        P A+  +    R G+ + D    +     +   V  E   +++   
Sbjct: 201 FQAGERKNNIDQQLPYAVTFMYALTRGGMNILDVFKSLAKAEDTYGEVAVEVDTIVKDME 260

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                +  +++ +    P          +      GG++++   + S     +  +  K 
Sbjct: 261 YFGHDIRTALANISSTTPSDRFQDLIYNLVTIIDSGGDIAKYFQDKSDQYLQKSMVDQKG 320

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
              ++   + +++   +   +  ++         +++      M+  +  A + IG ++ 
Sbjct: 321 FLETLALLSESYVTAFVAGPLFIIIMGVM----MIIMGSGSKSMVYAIIYAVLPIGSLMF 376

Query: 180 RLMINF 185
            +MI+ 
Sbjct: 377 VVMISI 382


>gi|323702301|ref|ZP_08113967.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
           574]
 gi|323532791|gb|EGB22664.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
           574]
          Length = 409

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 61/167 (36%), Gaps = 9/167 (5%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLS 66
           R    + +           + AG+P+  A+ ++  Q+      E    V+E    G +L+
Sbjct: 62  RKKVKIKELAVFCRQFATIIAAGIPILQALNILARQAESRRLRETITGVVEQLESGRTLA 121

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ES+ R     P          +    ++GG L +AL  L+       +++ K+++     
Sbjct: 122 ESLKRYRDVFPN-----IFISMIEAGEVGGVLDKALTRLADHFEKEHDIREKIKSAMTYP 176

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
                II      V+ L+ F  P ++ +L +      L       + 
Sbjct: 177 VL---IICLAICAVTALLTFVLPKFIQMLNDMHVELPLPTRIIIAVS 220



 Score = 40.9 bits (94), Expect = 0.087,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 40/133 (30%), Gaps = 5/133 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   V AG+P+  A+  +V ++              + +   LS +          
Sbjct: 276 FCRTLSTLVHAGVPILTALE-VVKKTCGNQVISNALTKAEESVREGLSIAEP----LERS 330

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +      T +    +  G L   L  ++       N      +  +E     ++   + F
Sbjct: 331 KVFPPMVTRMMAIGEDTGTLDILLERIAVFYERDVNDMVARLSSLLEPILIVFMGVIIGF 390

Query: 139 CVSTLVYFTSPGY 151
            V +++      +
Sbjct: 391 IVISMLLPMFKVF 403


>gi|1174586|sp|P45793|TAPC_AERHY RecName: Full=Type IV pilus assembly protein tapC
 gi|663117|gb|AAC43997.1| TapC [Aeromonas hydrophila]
 gi|1588984|prf||2209417C leader peptidase IV
          Length = 413

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/158 (10%), Positives = 44/158 (27%), Gaps = 6/158 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQ 79
             I   + AG+P+  ++ +I          E   ++      G  +SE++ R  R+    
Sbjct: 80  RQITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEALRRHPRH---- 135

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                   +    +  G L      ++      + +K+K++           +   +   
Sbjct: 136 -FDALYCDLVEAGEQSGALETIYDRIATYREKSEALKSKIKKAMFYPAMVILVAIVVTSI 194

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +   V             +        +  +  +    
Sbjct: 195 LLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQHWW 232


>gi|399798|sp|P31743|GSPF_AERHY RecName: Full=General secretion pathway protein F
 gi|809648|emb|CAA47127.1| ExeF [Aeromonas hydrophila]
          Length = 388

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 53/191 (27%), Gaps = 19/191 (9%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66
           R      +       +   V AGL + +A+  +  Q     +RS    V      G SL+
Sbjct: 42  RRGASTSELALITRQLATLVGAGLTIEEALRAVAEQCEKAHLRSLVATVRSKVVEGYSLA 101

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+                  +    +  G+L + L  L+     R++M+ K+    +  
Sbjct: 102 DSLGAFP-----HVFDQLFRSMVAAGEKSGHLEKVLNRLADYTEQRQHMRTKLLQAMIYP 156

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA-------------AAFML 173
                +   +   + T V          +           +                  +
Sbjct: 157 IVLTLVAVGVISILLTAVVPKVVAQFEHMGQQLPATTRFLIGTSELMQHYGLWFLLLLFI 216

Query: 174 IGIMVMRLMIN 184
            G +    + +
Sbjct: 217 GGFVWRWWLTD 227


>gi|269103693|ref|ZP_06156390.1| general secretion pathway protein F/type II secretory pathway
           component PulF [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163591|gb|EEZ42087.1| general secretion pathway protein F/type II secretory pathway
           component PulF [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 406

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 59/172 (34%), Gaps = 11/172 (6%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66
           R     ++       I   V+A +P+ + +  +  Q+    +++    V      G +L+
Sbjct: 60  RRGISTNELALITRQIATLVQASMPLEECLKAVAEQNEKPRLKNILLAVRSRVVEGYTLA 119

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S++                 +    +  G+L   L  L+    +R+ M++K+Q   +  
Sbjct: 120 DSMAEFP-----HIFDQLFRAMVAAGEKSGHLDAVLNRLADYAENRQQMRSKLQQAMIYP 174

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                +       VS L+    P  ++  +    G  L  +    +     V
Sbjct: 175 T---MLTLIAISVVSFLLATVVPKIVDQFVRT--GQPLPTITEVLLAASNFV 221


>gi|229817341|ref|ZP_04447623.1| hypothetical protein BIFANG_02603 [Bifidobacterium angulatum DSM
           20098]
 gi|229785130|gb|EEP21244.1| hypothetical protein BIFANG_02603 [Bifidobacterium angulatum DSM
           20098]
          Length = 425

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/179 (10%), Positives = 50/179 (27%), Gaps = 14/179 (7%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            DF      +   V AG+ +  A+ +++ Q+ +         +      +    S S+ +
Sbjct: 82  KDFAVTSRQLATMVSAGVSLIRALNIVIEQTRNEKLR---TALAECAAKIEAGSSFSQAM 138

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    + GG L ++L  ++        ++ ++++          I 
Sbjct: 139 EENEDDIFPPVMVYMVRAGETGGFLDKSLITVADSFEADVRLQGQIKSALAYPVVVLCIA 198

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA-----------AAFMLIGIMVMRL 181
            +L   +   +          +         + VA               LI   +   
Sbjct: 199 LALVAVMLLTIVPMFDNMYKSMNATLPLITQIMVAMGKVAPVAIPLVIVGLIAFFMFWR 257



 Score = 39.3 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/137 (10%), Positives = 40/137 (29%), Gaps = 5/137 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                 +     + +G+P+ +A+ ++   S + V         ++ +   +         
Sbjct: 287 ALARFCNNFSSMLASGVPILNALDIVGSTSGNYVLD-----TASKRVSNLVERGYRLSDS 341

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                      T +    +  G + + LA+  +   +     AK     +E      +  
Sbjct: 342 MASENVFPTMLTQMVSIGEDSGAIDQMLASAGKAYDEEAQSMAKQLTSLLEPLMILVLGV 401

Query: 135 SLPFCVSTLVYFTSPGY 151
            + F V  L       +
Sbjct: 402 VVGFMVLGLYMPMFSMF 418


>gi|167560917|ref|ZP_02353833.1| general secretion pathway protein F [Burkholderia oklahomensis
           EO147]
 gi|167571807|ref|ZP_02364681.1| general secretion pathway protein F [Burkholderia oklahomensis
           C6786]
          Length = 405

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +   + +R              +   + AGLP+ +A++V+  Q+  D +R     +    
Sbjct: 59  LGRKLSQREQAI------LTRQLASLLIAGLPLDEALSVLTEQAERDYIRELMAAIRAEV 112

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G SL+ +++   R     +       +    +  G L   L+ L+  + +R  +K K+
Sbjct: 113 LGGHSLAVALAEHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEERNALKQKI 167

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIM 177
                       I   +   V+ L+ +  P  +NV  +  +   LL +   A    +   
Sbjct: 168 VLAFTYPAIVTVIALGI---VTFLLSYVVPQVVNVFASTKQQLPLLTIVMMALSDFVRHW 224

Query: 178 VMRLMINFDV 187
              ++I   V
Sbjct: 225 WWAILIGIAV 234



 Score = 34.7 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 38/130 (29%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       S+          I     G +LS +++ +  + P
Sbjct: 274 FASTLAILTAAGVPILRALQAAGETLSNRAMRGNIEDAIVRVREGSALSRALNNVKTFPP 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G+++  L   S         +       +E      + G + 
Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRASEGESRELERRTMFLTSLLEPLLILAMGGIVL 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 VIVLAVMLPI 397


>gi|320531262|ref|ZP_08032241.1| type II secretion system F domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320136529|gb|EFW28498.1| type II secretion system F domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 317

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 53/146 (36%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   + +R ++     P+ ++++  +V AG     A+  +V      +  E    +    
Sbjct: 162 LSRAVARRLSRIEAQLPDIVELLALAVGAGQGPVPAIERVVALGRGDLIDELGATLTDIR 221

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  LS ++ RM R +    V+     I V  + G  L++ L + +  +R+        +
Sbjct: 222 SGTVLSTALDRMERRVGSVHVTRLCEAIIVALERGTPLADVLRSQATDVREAARQDLMEE 281

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146
               E      ++  +         F
Sbjct: 282 GGRREIAQMVPVVFLVLPITVVFALF 307


>gi|182412504|ref|YP_001817570.1| type II secretion system protein [Opitutus terrae PB90-1]
 gi|177839718|gb|ACB73970.1| type II secretion system protein [Opitutus terrae PB90-1]
          Length = 407

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/175 (13%), Positives = 50/175 (28%), Gaps = 4/175 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
              K+    L +       +   + AGLP+   +  +  Q+ DP       +I      +
Sbjct: 55  KKAKKYKLPLGELAIFTQQLASLLIAGLPLVQCLEALQDQTEDPCFRI---IIRDVRADI 111

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S   S S  V+  P    +     +    +  G L+E L  ++        +  KV++  
Sbjct: 112 SSGNSFSSSVKKFPNA-FNSLFVSMVEAGEASGGLAEILGKVASYFESTVRLTKKVKSAM 170

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
               A   +  +L   +   V                      +  +  +     
Sbjct: 171 TYPIAVIGLAVALVNVLLIFVIPVFASMFADFGAKLPAPTQALIDLSEFMKAYWW 225


>gi|119944257|ref|YP_941937.1| type II secretion system protein, type IV pilus biogenesis protein
           PilC [Psychromonas ingrahamii 37]
 gi|119862861|gb|ABM02338.1| type II secretion system protein, type IV pilus biogenesis protein
           PilC [Psychromonas ingrahamii 37]
          Length = 410

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 45/160 (28%), Gaps = 6/160 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             I   + AG+P+   + +I   S     R     + +    G  LS+++          
Sbjct: 77  RQIATMLGAGVPLVQGLQLIAKSSEKPASRKLMSTISQEVATGTPLSQTLR-----GHSL 131

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                   +    +  G L      +S      + +K+K++       A   + G +   
Sbjct: 132 YFDDLYCDLVYAGEQSGALDTIYDRISIYKEKSEILKSKIKKAMFYPAAVLTVAGLVTLL 191

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +   V             +     L  +  +  +     M
Sbjct: 192 LLLFVIPQFKDIFEGFGAELPAFTLFVLGISDFVQSYWYM 231


>gi|295109281|emb|CBL23234.1| Type II secretory pathway, component PulF [Ruminococcus obeum
           A2-162]
          Length = 404

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 62/157 (39%), Gaps = 9/157 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
            D        V   +AG+P+ +A+ ++  Q+ +  ++     V+     G +L++S++ +
Sbjct: 63  RDLSVFCRQFVSITQAGVPMKEALQMMTEQTENKWLKKATADVLVNVEKGNTLADSMASI 122

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P          +    +  G+L  +   ++        +KA ++  ++       +
Sbjct: 123 PDIFPP-----MLVNMVAAGESSGSLEMSFNRMATHFEKEAKLKATIRKATIYPI---IL 174

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
           I ++   ++ ++ +  P ++++  +       L +  
Sbjct: 175 ICAVIGVIAVMLLYVIPIFIDMFADLDVEMPALTMGV 211



 Score = 42.0 bits (97), Expect = 0.042,   Method: Composition-based stats.
 Identities = 12/135 (8%), Positives = 40/135 (29%), Gaps = 5/135 (3%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
                 +   + AG+  ++ +  +    ++       +  + + +               
Sbjct: 269 AQFARTMSTLMAAGISTTECLDTVSKIINNIHYKNALQKAKEEVMKGIPLSEPLAASEVF 328

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
           P          ++   +  GN+ E L+ L+    +   +  +    +ME     ++   +
Sbjct: 329 PP-----MVCHMTGIGEETGNMEEMLSKLADYYDEEVEITTQSVLAAMEPLIIVFMALIV 383

Query: 137 PFCVSTLVYFTSPGY 151
              V  ++      Y
Sbjct: 384 GTLVIAVLMPIRSMY 398


>gi|87308908|ref|ZP_01091046.1| bacterial type II secretion system protein [Blastopirellula marina
           DSM 3645]
 gi|87288251|gb|EAQ80147.1| bacterial type II secretion system protein [Blastopirellula marina
           DSM 3645]
          Length = 321

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 69/161 (42%), Gaps = 2/161 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRSEFRRVIET 58
           +      R ++     P+ALD+I  +  AGLP+  ++  +  +   S    +    +++ 
Sbjct: 139 ISSQAAARVSRIQHALPDALDMITMTTTAGLPLQKSIKRVSDEMVRSHEDLACELMILDR 198

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           Q    SL ++I    + + + EV+  +++++   ++GG+++ A  + +  +R  +   A+
Sbjct: 199 QAETGSLGQAIQNFAKRLEVPEVNALASLVTQAQRIGGSVAGAFRDFADSIRRSRRQLAE 258

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159
            +      K    +I  L   V  L+   S   +   +   
Sbjct: 259 ERGNQNSIKLLIPVIFLLAPPVYILLLGPSVLRLQDFMGSG 299


>gi|134293926|ref|YP_001117662.1| general secretion pathway protein F [Burkholderia vietnamiensis G4]
 gi|134137083|gb|ABO58197.1| general secretion pathway protein F [Burkholderia vietnamiensis G4]
          Length = 405

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/183 (12%), Positives = 57/183 (31%), Gaps = 10/183 (5%)

Query: 1   MKHLIKKR----TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRV 55
           +    ++R          +       +   + AGLP+ ++++V+  Q+  + VR     +
Sbjct: 49  LNGARQRRLSLGRKLSQREQAIITRQLASLLVAGLPLDESLSVLSEQAEREYVRELMASI 108

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                 G S + ++++  R     +       +    +  G L   LA L+  +     +
Sbjct: 109 RAEVVGGHSFANALTQHPR-----DFPDIYRALVAAGEHTGKLGVVLARLADYIEQSNAL 163

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K K+            I   +   + + V                   ++ +A +  +  
Sbjct: 164 KQKILLAFTYPGIVTLIAFGIVTFLLSYVVPQVANVFTSTKQQLPTLTVVMMALSGFVRH 223

Query: 176 IMV 178
              
Sbjct: 224 WWW 226



 Score = 35.5 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 36/130 (27%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       S+          I     G +LS +++       
Sbjct: 274 FASTLGILTAAGVPILRALQAAGETLSNRAMRANVDDAIVRVREGSALSRALA------H 327

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +        +    +  G+++  L   S         +       +E      + G + 
Sbjct: 328 TKTFPPVLVHLIRSGEATGDVTTMLDRASEGESRELERRTMFLTSLLEPLLILAMGGVVL 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 VIVLAVMMPI 397


>gi|328954941|ref|YP_004372274.1| Type II secretion system F domain protein [Coriobacterium glomerans
           PW2]
 gi|328455265|gb|AEB06459.1| Type II secretion system F domain protein [Coriobacterium glomerans
           PW2]
          Length = 320

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 81/177 (45%), Gaps = 1/177 (0%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           K     P A   +  ++ +G  ++  +  +   + +PVR+EF R   +   G+S + ++ 
Sbjct: 145 KLASAMPEAFGALAIALGSGHSLAQGMRFVGSHAEEPVRTEFLRASFSIVCGMSATSALD 204

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            ++  +P   +   +  + V  + G  L + LA  S ++ DR  +  +++  + +A+ SA
Sbjct: 205 ELLARLPAPGLDLVALALKVSQRTGAPLKDLLAEASEMVGDRIELVRRLEVKTAQARMSA 264

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
            ++  +P  ++ ++   S  +   L     G + +  A A      M++R +++  +
Sbjct: 265 RMVALMPVAMTCILALLSKDFQRGL-TTAPGTVSVVAALALNAAAWMIIRRIMDVRI 320


>gi|320156058|ref|YP_004188437.1| flp pilus assembly protein TadC [Vibrio vulnificus MO6-24/O]
 gi|319931370|gb|ADV86234.1| flp pilus assembly protein TadC [Vibrio vulnificus MO6-24/O]
          Length = 293

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 63/148 (42%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIE 57
           +     +   K     P+A+D++V  V +GL ++ A   +     +   P+  +FR    
Sbjct: 134 LNLNADRYRKKLKQSAPDAIDLLVLCVESGLSLNRAFERVARYLQEQHAPMAEQFRVTSA 193

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              L    +++++ +     + E+   +T +++  + G  L++ L  +S   R ++ +  
Sbjct: 194 ELDLLNDRTQALNNLSWRTGIPELHTLATTLTMADKYGSPLADTLRQISEDARRQRALDI 253

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A  +  K +   +  +   +  +V 
Sbjct: 254 EERAGKLPGKITLIQMTMIMLPMLVMVI 281


>gi|170782447|ref|YP_001710780.1| putative type II secretion protein protein [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157016|emb|CAQ02189.1| putative type II secretion protein protein [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 274

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 69/173 (39%), Gaps = 3/173 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           + +P+ +D +V +VRAG+ + DAVA +       +R  FR          S + ++  + 
Sbjct: 96  EVWPDVVDHLVSAVRAGMGLPDAVASLAVAGPVVLRPAFREFASVHRTTGSFAVALDELK 155

Query: 74  RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + +  +  G  L + L  L+R LRD   ++++ +A       +A +
Sbjct: 156 EQLADPTADRILETLRMAREVGGTQLPDVLRGLARFLRDEAAIRSEAEARQSWVVNAAKL 215

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             + P+ +  L+   S        +   G +++ V      +   +M  +   
Sbjct: 216 GVAAPWIILALLSTRSEAVAA--YDTAAGTVVIVVGLVVSAVAYRLMLALGRL 266


>gi|83721515|ref|YP_440569.1| general secretion pathway protein F [Burkholderia thailandensis
           E264]
 gi|167582886|ref|ZP_02375760.1| general secretion pathway protein F [Burkholderia thailandensis
           TXDOH]
 gi|167621026|ref|ZP_02389657.1| general secretion pathway protein F [Burkholderia thailandensis
           Bt4]
 gi|83655340|gb|ABC39403.1| general secretion pathway protein F [Burkholderia thailandensis
           E264]
          Length = 405

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 69/188 (36%), Gaps = 17/188 (9%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +   + +R              +   + AGLP+ +A+AV+  Q+  D +R     +    
Sbjct: 59  LGRKLSQREQAI------LTRQLASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEV 112

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G SL+ ++++  R     +       +    +  G L   L+ L+  + +R  +K K+
Sbjct: 113 LGGHSLANALTQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEERNALKQKI 167

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIM 177
                       I   +   V+ L+ +  P  +NV  +  +   LL +   A    +   
Sbjct: 168 LLAFTYPAIVTVIALGI---VTFLLSYVVPQVVNVFASTKQQLPLLTIVMMALSDFVRHW 224

Query: 178 VMRLMINF 185
              ++I  
Sbjct: 225 WWAILIGI 232


>gi|124268322|ref|YP_001022326.1| general secretory pathway protein F [Methylibium petroleiphilum
           PM1]
 gi|124261097|gb|ABM96091.1| general secretory pathway protein F [Methylibium petroleiphilum
           PM1]
          Length = 404

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 57/167 (34%), Gaps = 8/167 (4%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVR 74
                  +   V AGLP+  A+  +  ++ DP + E    +    + G   + ++    R
Sbjct: 67  LAIWTRQLAGLVSAGLPLERALTALTDEAEDPRQRELLAHLRAEVNAGSPFARALGNAPR 126

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                E       +    +  G L   L  L+  L +R+ +++K+   ++     + +  
Sbjct: 127 -----EFDDVYRAVVGAGEQTGQLGLVLEKLADDLEERQELRSKLIGAALYPAIVSLVAI 181

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHM--LLGVAAAFMLIGIMVM 179
            +   + T V                     +L ++A     G ++M
Sbjct: 182 VIVVFLVTYVVPQVASVFAGGKRALPFLTSAMLAISAFLRSWGWLLM 228


>gi|238916728|ref|YP_002930245.1| type IV pilus assembly protein PilC [Eubacterium eligens ATCC
           27750]
 gi|238872088|gb|ACR71798.1| type IV pilus assembly protein PilC [Eubacterium eligens ATCC
           27750]
          Length = 425

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/160 (10%), Positives = 49/160 (30%), Gaps = 8/160 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            D           ++AG+ V +A+ ++  Q+ +    E        +   ++ +  +   
Sbjct: 85  RDMSVFCRQFASILKAGVSVINALEMLAEQTENKKLKE-----AIVNTQSNVEKGENLSD 139

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G+L  +L  ++        +   V+   M       ++
Sbjct: 140 SMRQNDAFPSILIDMVRAGEASGSLENSLTRMAIQFEKDAKLNGIVKKAMMYPI---VLL 196

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             +   +  ++ F  P +M +  +      +   A   M 
Sbjct: 197 CVMIGVIIVMLTFVIPSFMTMFEDLDSELPVTTKAILAMS 236



 Score = 46.7 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 49/141 (34%), Gaps = 10/141 (7%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   ++AG+P+ DA+ +      + +       +E    G+SL   +S  ++   L
Sbjct: 292 FARTMSTLLQAGMPMIDALEISASTMKNVLF---YDGLEKAKNGVSLGLPLSNQLKATGL 348

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  GN+ E L N +    +   ++ +     ME      II  L  
Sbjct: 349 --FPAMVVHMVGIGEETGNVEEMLTNSAAYYEEEVEVQTQTLTSLMEP-----IIIVLMA 401

Query: 139 CVSTLVYFTSPGYMNVLINDP 159
            V  ++       M  L N  
Sbjct: 402 LVVVMLIMAIYQPMIQLYNTL 422


>gi|94968418|ref|YP_590466.1| type II secretion system protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94550468|gb|ABF40392.1| type II secretion system protein [Candidatus Koribacter versatilis
           Ellin345]
          Length = 404

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 50/172 (29%), Gaps = 6/172 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISR 71
             D           + AGLP+   + ++   Q S   +     V  T   G +L  ++  
Sbjct: 61  TKDIAIFFRQFSVMIDAGLPLVQCLEILAGNQESQAFQKALNGVRTTVEGGSTLGNAMRG 120

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +             +    + GG L   L  L+  +     +KA V++  +   +   
Sbjct: 121 YPKI-----FDDLMVNMVDAGETGGILDTILQRLATYVEKAVKLKAAVRSALIYPVSVIT 175

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           I   +   +   V          L         + +  +  L     M  ++
Sbjct: 176 IAVLIVGLLLWKVVPIFANLFVGLGAPLPLPTRIVIGISNFLGSFWWMVPIM 227


>gi|15806863|ref|NP_295586.1| pilin biogenesis protein [Deinococcus radiodurans R1]
 gi|6459643|gb|AAF11416.1|AE002026_4 pilin biogenesis protein [Deinococcus radiodurans R1]
          Length = 406

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 59/175 (33%), Gaps = 8/175 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRM 72
                    +   + AG+P+  ++A++  Q  +       ++V      G  LSE++ + 
Sbjct: 66  KQVAVFSKQLATLINAGVPLVQSLAILQRQLDNKTFEAVIKKVRGEVESGQPLSEALQQH 125

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +             +    +  G L   L  ++     +  ++ K+++           
Sbjct: 126 PKIFG-----RLFINLVRAGETSGTLDTVLERIADFQEKQLALQGKIKSALTYPTVVLVF 180

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMINF 185
              + + + T V     G +  L         ML+ V+      G++++ ++   
Sbjct: 181 ALGITYFLLTTVVPQFAGILTQLNAPLPFITRMLMAVSNFLQHSGLLLLAIIAVI 235


>gi|209515956|ref|ZP_03264817.1| type II secretion system protein [Burkholderia sp. H160]
 gi|209503614|gb|EEA03609.1| type II secretion system protein [Burkholderia sp. H160]
          Length = 316

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 57/146 (39%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  LI +R        P+ALD++V    AG  +   V  +  +      P+  EF    +
Sbjct: 157 LNALISRRQKAIASCLPDALDLLVICTNAGNSLVVGVKRVARELETICPPLADEFAVAGD 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +    + ++  +   + L  V    T +    Q G  ++ +L  LSR  R  + M  
Sbjct: 217 ELQVSGDSAGALRNLAARIGLPSVRALVTTLIQSQQYGTPITHSLRMLSRAERTAQMMAL 276

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K +  ++  +   V  +
Sbjct: 277 EEKAAKLATKMTMPMMLFILPTVGLI 302


>gi|297161945|gb|ADI11657.1| putative integral membrane protein [Streptomyces bingchenggensis
           BCW-1]
          Length = 304

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 66/183 (36%), Gaps = 3/183 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
              +RT +         +++  ++ A   +  AV      +   +R E   +  +   G 
Sbjct: 102 AAARRTERME-ALALWTEMLRDTLSAAAGLEQAVLTTADIAPSALRRELGDLAVSVRSGQ 160

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQAL 122
           SL  S+      +           + + +Q   + L+  L  L+  +R++  M+ ++ A 
Sbjct: 161 SLPASLRSFADEVDDPLADVVVAALVMAAQRQASQLAALLGELADSVREQVAMRQRIDAG 220

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
               +A   +  ++   ++  +   +  Y++   N   G ++L +  A   +    +  +
Sbjct: 221 RASIRAGVRVTVTVTLGMAVGLTVFNRPYLDP-FNTLSGQVVLAIVGALFALSFTWLTAI 279

Query: 183 INF 185
              
Sbjct: 280 GRL 282


>gi|184200572|ref|YP_001854779.1| hypothetical protein KRH_09260 [Kocuria rhizophila DC2201]
 gi|183580802|dbj|BAG29273.1| hypothetical membrane protein [Kocuria rhizophila DC2201]
          Length = 314

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 1/147 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R    + +FP   +++  +V AG     A+  +   +   +  EFR V+    
Sbjct: 159 LSRSIRRREKLMVAEFPAIAELMALAVGAGESTVGALERVCRVAEGELSGEFRAVLAQTR 218

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD-RKNMKAKV 119
            G  L+ ++        +  +  F   I V  + G  L+E L   ++ +RD  K +  +V
Sbjct: 219 AGSGLTTALQDFSARTDVVALGRFVDGIVVAIERGTPLAEVLRAQAQDVRDHDKRVLMEV 278

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146
                 A     +   LP  V+  V+ 
Sbjct: 279 AGKKEIAMLVPVVFFILPLSVAFAVFP 305


>gi|187736073|ref|YP_001878185.1| type II secretion system protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187426125|gb|ACD05404.1| type II secretion system protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 422

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/161 (12%), Positives = 46/161 (28%), Gaps = 4/161 (2%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                   +   + AGLP+  ++ V+  Q ++P        +     G S          
Sbjct: 78  ALMIFTRQLATLIDAGLPLLQSLNVLAKQEANPNLRVTIEALGDSVQGGS----TFSEAL 133

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
               +        +    +LGG L   L  L+      + +K+KV +  +      +I  
Sbjct: 134 AQHPRIFDRLFVNMVKAGELGGVLEVVLNRLAEYQEKAQKLKSKVISAMVYPSIVLFIAV 193

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
            +   +  ++             +  G        +   + 
Sbjct: 194 GIVIFLMLVIVPKFKAMFAEQNQELPGISEFVFGISDWFMA 234


>gi|225174919|ref|ZP_03728916.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169559|gb|EEG78356.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
          Length = 401

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 56/180 (31%), Gaps = 8/180 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSL 65
           KR      +       +   + AG+P++  +  +  Q+ +  +R     V      G+S 
Sbjct: 57  KRKVSI-GELSLFSRQLAAMLSAGIPLTRCLFALGEQAINPTLRKVVLEVGANVEGGMSF 115

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           SES+            +     +    ++GG L   L  L+  L   K +K  ++     
Sbjct: 116 SESLRAHPD-----VFNDMYVDLVKAGEVGGTLENVLLRLADQLNSEKTLKDNIRTAMFY 170

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
                     +   +   +     G+      +      + V  +  +     + L+I  
Sbjct: 171 PTVVLAFAVLVMIGMLVFIVPVFVGFY-PDGAELPFLTAVIVGISNSVRVYWYIYLLIAL 229



 Score = 38.6 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 41/131 (31%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   +  G+PV  A+        S  V    +        G S++E +     + P
Sbjct: 270 FSRTLATLLAGGIPVLQALETAGPASGSTMVEKAVQDTAMKIQEGQSIAEPLKESKLFPP 329

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +       T++    +  G+L   L  ++          AK     +E     ++ G + 
Sbjct: 330 M------VTLMISVGEETGDLPSLLNRIAEFYEAEVATMAKGLTALIEPLMIIFVGGIVA 383

Query: 138 FCVSTLVYFTS 148
             V +L     
Sbjct: 384 VMVISLYLPIF 394


>gi|215413583|ref|ZP_03422251.1| transmembrane protein [Mycobacterium tuberculosis 94_M4241A]
 gi|298527131|ref|ZP_07014540.1| hypothetical protein TBAG_02389 [Mycobacterium tuberculosis
           94_M4241A]
 gi|298496925|gb|EFI32219.1| hypothetical protein TBAG_02389 [Mycobacterium tuberculosis
           94_M4241A]
          Length = 266

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 1/172 (0%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                AL+++V  +RAG     A ++   ++  PV    R V     LG  ++  +    
Sbjct: 91  QALEAALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAA 150

Query: 74  RYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           R   L       +    + S  G  ++  +    R + +R+   A+V A    A+ASA I
Sbjct: 151 RSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAI 210

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +  LP     L        ++ L+    G  LL V       G++    + +
Sbjct: 211 LAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWPDRITD 262


>gi|317489773|ref|ZP_07948272.1| hypothetical protein HMPREF1023_01971 [Eggerthella sp. 1_3_56FAA]
 gi|316911119|gb|EFV32729.1| hypothetical protein HMPREF1023_01971 [Eggerthella sp. 1_3_56FAA]
          Length = 301

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 59/152 (38%), Gaps = 1/152 (0%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESI 69
                 P+A++++  ++ AG P+      +      P+  EF  V    +L   S  E++
Sbjct: 150 AIELALPDAMELLGIAIAAGSPIEQCFREVAESMDGPLAREFSLVDREVNLLGRSREEAL 209

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
             + +    Q+VS F+  +      G +L+E LA  + + R+    +A  +   M  K  
Sbjct: 210 EHLGQRCRSQDVSAFTAQLMQAVSQGSSLTEGLAVQAALARETAQAEAMERIRKMPTKLD 269

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
             +          LV   +   +   +ND  G
Sbjct: 270 IVLSLCFLPPTVALVVVPTVVNLLNFLNDSMG 301


>gi|238025714|ref|YP_002909945.1| general secretion pathway protein F [Burkholderia glumae BGR1]
 gi|237874908|gb|ACR27241.1| General secretion pathway protein F [Burkholderia glumae BGR1]
          Length = 405

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 54/171 (31%), Gaps = 6/171 (3%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSE 67
                 +       +   + AGLP+ +A+AV+  Q+  D +R     +      G SL+ 
Sbjct: 61  RKLSQREQAILTRQLASLLTAGLPLGEALAVLTEQAERDYIRELMAAIRAEVLGGHSLAS 120

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +++   R     +       +    +  G L   L+ L+  +  R  +K K+        
Sbjct: 121 ALTEHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEQRNALKQKIVLAFTYPG 175

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
               I   +   + + V                   ++ +A +  +     
Sbjct: 176 IVTLIALGIVTFLLSYVVPQVVNVFASTKQQLPFLTIVMMALSAFVRHWWW 226



 Score = 37.0 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 36/130 (27%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       S+   S      I     G SLS +         
Sbjct: 274 FASTLAILTAAGVPILRALQAAGETLSNRAMSGNIDDAIVRVREGTSLSRA------LNH 327

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           ++        +    +  G+++  L   +         +       +E      + G + 
Sbjct: 328 VKSFPPVLVHLIRSGEATGDVTTMLDRAAEGEARELERRTMFMTSLLEPLLILAMGGIVL 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 VIVLAVMLPI 397


>gi|254173284|ref|ZP_04879957.1| Bacterial type II secretion system protein F domain [Thermococcus
           sp. AM4]
 gi|214032693|gb|EEB73522.1| Bacterial type II secretion system protein F domain [Thermococcus
           sp. AM4]
          Length = 303

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 73/182 (40%), Gaps = 6/182 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
             I KR  +   + P+A   +  S+RAG+  S+A+  +       +  EF+RV+     G
Sbjct: 86  WRISKRLEEMEKNLPDAFFYLASSLRAGISFSEALEDLTTAKFGALTEEFKRVVGEIRKG 145

Query: 63  LSLSESISRMV-RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
            S  E++  M  R      +     +I    + G  +S+ L  ++  +R+   +K + +A
Sbjct: 146 RSTVEALRVMALRNRKSPVIYRSLMIIIEALERGAPMSDVLVYVANDVREILRIKQERKA 205

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            +        I       V   +  T    M +++  P    +  V      +G ++++ 
Sbjct: 206 STGMQMMFFIITSG---FVGPAIIGTVGKLMGIMVQGPAQAQIPTVLNIL--LGFVIIQA 260

Query: 182 MI 183
           ++
Sbjct: 261 IV 262


>gi|149376815|ref|ZP_01894572.1| Type II secretory pathway, component PulF [Marinobacter algicola
           DG893]
 gi|149358936|gb|EDM47403.1| Type II secretory pathway, component PulF [Marinobacter algicola
           DG893]
          Length = 406

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 44/147 (29%), Gaps = 6/147 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   ++AG+P+  +  ++     +  +R     V      G S + S+ R  
Sbjct: 67  DIALFTRQMATMMKAGVPLVQSFDIVTDGLENQGLRELIAAVRNDVASGTSFANSLRRHP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           +             +    +  G L + L  ++  L   + +K KV+       A   + 
Sbjct: 127 K-----YFDDLYCNLVDSGEKAGALEQMLDRIAMYLEKSETLKKKVRKAMTYPIAVIVVA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR 160
             +   +   V             D  
Sbjct: 182 IVVTAILLVKVVPQFESLFQGFGADLP 208



 Score = 36.3 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 39/128 (30%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
            ++  +  +G+P+ DA+  + G + + V  +    I        +S              
Sbjct: 277 RVLSTTFASGVPLVDALESVAGATGNAVYRDAVLKIRD-----DVSSGTQLQASMKTTGV 331

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
               +  ++   +  GNL E L  ++       +         ME    A +   +   +
Sbjct: 332 FPVMAVQLTAIGEESGNLDEMLEKVADHYEGVVDDMVDNLTALMEPMIMAVLGVLVGGLI 391

Query: 141 STLVYFTS 148
             +     
Sbjct: 392 VGMYLPIF 399


>gi|254255261|ref|ZP_04948577.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158]
 gi|124900998|gb|EAY71748.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158]
          Length = 324

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 71/162 (43%), Gaps = 4/162 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   +  R  K  +DFP+ALD++   V AGL +  A+  +  +    SD V  E   ++ 
Sbjct: 157 LSQRVAARQQKIFEDFPDALDLLTVCVEAGLGLDAALMKVSEELRFRSDVVAGELDLLLL 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +     ++++  F  ++    + G ++SE+L  LS +LR R+ M+A
Sbjct: 217 EMRSGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESLRVLSDLLRTRRRMRA 276

Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158
           + +A  +        I    P  +  L+         VL+  
Sbjct: 277 EERAAKIALKLLFPLIFCIFPALMVVLLGPAMIHVYRVLLPT 318


>gi|149909375|ref|ZP_01898030.1| type IV pilus biogenesis protein PilC [Moritella sp. PE36]
 gi|149807485|gb|EDM67434.1| type IV pilus biogenesis protein PilC [Moritella sp. PE36]
          Length = 417

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/172 (10%), Positives = 49/172 (28%), Gaps = 8/172 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSL 65
           K+              I   + AG+P+  ++ +I   + +P        V      G SL
Sbjct: 73  KKIKAMDIAL--ISRQISTMLNAGVPLVQSLEIIARSNDNPAMRSLIGEVAAEVSTGTSL 130

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S+++ +                +    +  G+L      ++      + +K+K++     
Sbjct: 131 SDTLRKHP-----IYFDDLYCDLISAGEQSGSLDTIYDRIATYKEKAEALKSKIKKAMFY 185

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
                 +   +   +   V             +     L  ++ +  +    
Sbjct: 186 PIMVVAVAVVVTLILLLYVIPQFKDIFAGFGAELPPFTLFVLSISDFVSQFW 237



 Score = 37.0 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 41/135 (30%), Gaps = 7/135 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMV 73
                   +  +  AG+P+ D++    G S + V       +      GL +  ++    
Sbjct: 283 ALARFARTLSTTFAAGIPLVDSLTSAAGASGNIVYKHAVMEMRNEVIAGLPMHIAMRS-- 340

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                       T + +  +  G+L + LA ++ I   + +         +E      + 
Sbjct: 341 ----TNLFPDMVTQMVMIGEESGSLDDMLAKVAHIYEQQVDDAVDGLTSLIEPMIMVVLG 396

Query: 134 GSLPFCVSTLVYFTS 148
             +   V  +     
Sbjct: 397 VIIGGLVIAMYLPIF 411


>gi|59710970|ref|YP_203746.1| MSHA biogenesis protein MshG [Vibrio fischeri ES114]
 gi|197334764|ref|YP_002155120.1| general secretion pathway protein F [Vibrio fischeri MJ11]
 gi|59479071|gb|AAW84858.1| MSHA biogenesis protein MshG [Vibrio fischeri ES114]
 gi|197316254|gb|ACH65701.1| general secretion pathway protein F [Vibrio fischeri MJ11]
          Length = 408

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 51/165 (30%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRM 72
           +        +    +AG+P+  A+  +   S++ +       V      G SLS S+ + 
Sbjct: 67  EVLVIFCRQMYSLTKAGVPLLRAMNGLAQNSNNKLLKTTLEEVTADLTNGRSLSVSMQQH 126

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +       S     +    +  G L ++L  L+         + ++++           
Sbjct: 127 PQ-----VFSSLFVSMIHVGENTGRLDQSLMQLANYYEQEMETRKRIKSAMRYPVFVLTF 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           I    F ++  V     G       +      + +A +   +   
Sbjct: 182 ILLAMFVLNIKVIPQFAGMFARFGVELPLPTRILIATSSFFVNYW 226



 Score = 39.7 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 10/135 (7%), Positives = 33/135 (24%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         +++G+P++ ++A+      +              +   +    S  
Sbjct: 269 RAQMSRFSRTFALMLKSGVPLNQSLALSAESLGNKYLE-----NRLLEMKAGIESGTSMS 323

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    +     +    +  G + + L  +S       +   K     +E      +
Sbjct: 324 ATAAQSGIFTPLVQQMIAVGEETGQIDDLLLEVSDFYDREVDYDLKTLTARIEPILLVIV 383

Query: 133 IGSLPFCVSTLVYFT 147
            G +      +    
Sbjct: 384 SGMVLILALGIFLPM 398


>gi|167751232|ref|ZP_02423359.1| hypothetical protein EUBSIR_02218 [Eubacterium siraeum DSM 15702]
 gi|167655739|gb|EDR99868.1| hypothetical protein EUBSIR_02218 [Eubacterium siraeum DSM 15702]
          Length = 399

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/181 (10%), Positives = 53/181 (29%), Gaps = 15/181 (8%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   + +G+ +  A+ ++     +   +     + E    G S SE+I+ 
Sbjct: 59  TKDLSFFCRQLAAMLTSGVSLVKALQILQAQSENKKQKQVLLDIYEEVQKGRSFSEAIAT 118

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P          +    +  G+L   +  +S         + K++   +       
Sbjct: 119 KPGVFP-----SLFVSMVSAGEASGSLDTIMNRVSEHYAKDSKTQNKIKGAMIYPIVLLV 173

Query: 132 IIGSLPFCVSTLVYFTS---------PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           ++  +   + T++             P     +       +        + I I++   +
Sbjct: 174 LLLVIMIAMFTMIMPMFRDLAGDTEMPPLSAAIFGISDFMINQWYILVIVAIAIVITLRI 233

Query: 183 I 183
           I
Sbjct: 234 I 234


>gi|71281766|ref|YP_271236.1| general secretion pathway protein F [Colwellia psychrerythraea 34H]
 gi|71147506|gb|AAZ27979.1| general secretion pathway protein F [Colwellia psychrerythraea 34H]
          Length = 413

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 55/156 (35%), Gaps = 6/156 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            +       +   + +GLP+ +++  +  Q   + ++S    V      G  LSES++  
Sbjct: 73  AELALITRQLATLIESGLPLEESLMAVAEQCEKNRIKSMIMGVRTKVTEGYGLSESMAEY 132

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +       +     +    +  G+L + L  L+     R+ M++++    +       +
Sbjct: 133 PKA-----FNRLYRSMVAAGEKSGHLDKVLNRLADYTEKRQEMRSQLIQALVYPIIMTVV 187

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168
              +   + T V     G    +  +  G     +A
Sbjct: 188 AVGVIAILLTAVVPKIVGQFEHMGENLPGTTQFLIA 223


>gi|331002544|ref|ZP_08326061.1| hypothetical protein HMPREF0491_00923 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330409147|gb|EGG88603.1| hypothetical protein HMPREF0491_00923 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 284

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 51/151 (33%), Gaps = 1/151 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I  R  + L D+P  L  +   V AG+P+ +A   +   +   +  E R       
Sbjct: 131 LNDKINSRRDELLRDYPGMLSKLTLLVNAGVPIREAWVRVADDNEGLLYQEMRNTAMELS 190

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKV 119
            G+   E          ++ +  FST++     +    +   L ++S    + K  + K 
Sbjct: 191 NGIQEIEVYKAFGERCSIKSLKKFSTMMIQNLQKGSNEVVIFLKDMSNEAWEEKKHEVKR 250

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150
           +     +K    I       +  ++      
Sbjct: 251 KGEKASSKLIMPIGLIFLGVMILIIVPMFAS 281


>gi|325282694|ref|YP_004255235.1| Type II secretion system F domain-containing protein [Deinococcus
           proteolyticus MRP]
 gi|324314503|gb|ADY25618.1| Type II secretion system F domain protein [Deinococcus
           proteolyticus MRP]
          Length = 406

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 55/166 (33%), Gaps = 6/166 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMP 77
               +   + AG+P+  A+ ++  Q       E  R V      GL LSE++++  +   
Sbjct: 71  FSRQMATLINAGVPLVQALFIMQKQIEHKSFQEVVRKVRIDVEGGLPLSEAMAKHPKA-- 128

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               +     +    +  G L   L  ++        ++ KV+               + 
Sbjct: 129 ---FNRLYLNLVRAGETSGTLELILGRIADFQEKDLALRGKVKKALTYPTIVLVFALLIT 185

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           + +   V  T    +  +  +      + ++ +  L     + ++I
Sbjct: 186 WGLIRFVVPTFGDILTSMNTELPIITRMLMSMSAFLQSYTWVLVLI 231


>gi|22124672|ref|NP_668095.1| type IV pilin biogenesis protein [Yersinia pestis KIM 10]
 gi|45440117|ref|NP_991656.1| type IV pilin biogenesis protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|153997530|ref|ZP_02022630.1| putative type II secretion system protein [Yersinia pestis
           CA88-4125]
 gi|162100163|ref|YP_652836.2| type IV pilin biogenesis protein [Yersinia pestis Antiqua]
 gi|162139448|ref|YP_646593.2| type IV pilin biogenesis protein [Yersinia pestis Nepal516]
 gi|162421450|ref|YP_001605603.1| type IV pilin biogenesis protein [Yersinia pestis Angola]
 gi|165925869|ref|ZP_02221701.1| putative protein transport protein HofC [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936613|ref|ZP_02225180.1| putative protein transport protein HofC [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010015|ref|ZP_02230913.1| putative protein transport protein HofC [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166214119|ref|ZP_02240154.1| putative protein transport protein HofC [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398755|ref|ZP_02304279.1| putative protein transport protein HofC [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167420522|ref|ZP_02312275.1| putative protein transport protein HofC [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423299|ref|ZP_02315052.1| putative protein transport protein HofC [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167469162|ref|ZP_02333866.1| putative protein transport protein HofC [Yersinia pestis FV-1]
 gi|218930444|ref|YP_002348319.1| type IV pilin biogenesis protein [Yersinia pestis CO92]
 gi|229839071|ref|ZP_04459230.1| putative type II secretion system protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229896550|ref|ZP_04511718.1| putative type II secretion system protein [Yersinia pestis
           Pestoides A]
 gi|229899635|ref|ZP_04514776.1| putative type II secretion system protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229901030|ref|ZP_04516153.1| putative type II secretion system protein [Yersinia pestis
           Nepal516]
 gi|270489208|ref|ZP_06206282.1| type II secretion system F domain protein [Yersinia pestis KIM D27]
 gi|21957483|gb|AAM84346.1|AE013678_1 putative integral membrane protein [Yersinia pestis KIM 10]
 gi|45434972|gb|AAS60533.1| putative type II secretion system protein [Yersinia pestis biovar
           Microtus str. 91001]
 gi|115349055|emb|CAL22016.1| putative type II secretion system protein [Yersinia pestis CO92]
 gi|149289167|gb|EDM39247.1| putative type II secretion system protein [Yersinia pestis
           CA88-4125]
 gi|162354265|gb|ABX88213.1| putative protein transport protein HofC [Yersinia pestis Angola]
 gi|165915262|gb|EDR33872.1| putative protein transport protein HofC [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922481|gb|EDR39658.1| putative protein transport protein HofC [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990922|gb|EDR43223.1| putative protein transport protein HofC [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166204750|gb|EDR49230.1| putative protein transport protein HofC [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166961328|gb|EDR57349.1| putative protein transport protein HofC [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051259|gb|EDR62667.1| putative protein transport protein HofC [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167057469|gb|EDR67215.1| putative protein transport protein HofC [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229681755|gb|EEO77848.1| putative type II secretion system protein [Yersinia pestis
           Nepal516]
 gi|229687127|gb|EEO79202.1| putative type II secretion system protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229695437|gb|EEO85484.1| putative type II secretion system protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229700624|gb|EEO88655.1| putative type II secretion system protein [Yersinia pestis
           Pestoides A]
 gi|270337712|gb|EFA48489.1| type II secretion system F domain protein [Yersinia pestis KIM D27]
 gi|320016633|gb|ADW00205.1| putative type II secretion system protein [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 399

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 56/177 (31%), Gaps = 10/177 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72
           +        +   ++AGLP+ +++ ++  ++ D         + +    G SLSE + + 
Sbjct: 59  ERLVAMTRQLATLLQAGLPLVNSLQLLAKEADDSAWRCLLDEISQQVAQGQSLSEVMEQY 118

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +L GNL +    L      ++N+  KV            +
Sbjct: 119 P-----HVFPRLYPPVVAVGELTGNLEQCCTQLVHHQERQQNLHKKVIKALKYPVVVCIV 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHM--LLGVAAAFMLIG--IMVMRLMINF 185
              +   +  +V                G    LL ++      G  + ++  ++  
Sbjct: 174 ALVVSVIMLVMVLPEFAQIYQSFDTPLPGLTASLLWLSTFLTFYGPYLALIIAIVCI 230



 Score = 41.6 bits (96), Expect = 0.054,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 36/133 (27%), Gaps = 5/133 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                  +  + +AGLP+S  +        +    +  R I+ Q     +S+ I      
Sbjct: 265 LSQIFQTLAITQQAGLPLSAGLDAAARSIHNYNYQQALRCIQKQ-----ISQGIPLYTTL 319

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                       +    +  G+    L  L+   + +    A      +E      I   
Sbjct: 320 NQHPLFPAICQQLIRVGEESGSQDVLLEKLACWHQQQTQNLADNVTQMLEPLLMLIIGSI 379

Query: 136 LPFCVSTLVYFTS 148
           +   V  +     
Sbjct: 380 VGVLVIAMYLPIF 392


>gi|325273277|ref|ZP_08139555.1| type IV pili biogenesis protein PilC [Pseudomonas sp. TJI-51]
 gi|324101608|gb|EGB99176.1| type IV pili biogenesis protein PilC [Pseudomonas sp. TJI-51]
          Length = 402

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 58/184 (31%), Gaps = 21/184 (11%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSL 65
           KR  K   D       +   ++AG+P+  A  V+     S  + +   R+ +    GL L
Sbjct: 58  KRREK--ADPAGFSRQLATLLKAGVPLLQAFEVMGRSGCSAALAALLVRLKQDVAAGLGL 115

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           + ++ R                +    +  G L   L  L+ +L  R+ ++ KV+   + 
Sbjct: 116 ANALQRHP-----GWFDALYCNLVRVGEQSGTLDRQLEQLAGMLEQRRALQKKVRKAMVY 170

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVL-------------INDPRGHMLLGVAAAFM 172
                     +   +   V          +             ++   G     + A  +
Sbjct: 171 PLLLLLTGLGVSAVLLLEVIPRFEDMFAGMGAQLPAFTQWVIDLSTGFGRFAPMLLALGL 230

Query: 173 LIGI 176
           ++G 
Sbjct: 231 VLGF 234



 Score = 38.2 bits (87), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/137 (10%), Positives = 41/137 (29%), Gaps = 7/137 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISR 71
                     +  +  AG+P+ DA+  +   +   +      R+ +    G  L+++++ 
Sbjct: 266 QAALARFARSLATAYAAGVPLLDALGTVARVTGGQLHEQAVLRLRQGMANGQGLNQAMAG 325

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              + P          ++   +  G L   L   +    ++ +         +E      
Sbjct: 326 EPLFPP------LLVQLTAIGEASGTLDTMLDKAASHYEEQVSQALDQLTSLLEPAIVLV 379

Query: 132 IIGSLPFCVSTLVYFTS 148
           +   +   V  +     
Sbjct: 380 LGLLVGGLVVAMYLPIF 396


>gi|310657500|ref|YP_003935221.1| general secretory pathway component, cryptic [Clostridium
           sticklandii DSM 519]
 gi|308824278|emb|CBH20316.1| general secretory pathway component, cryptic [Clostridium
           sticklandii]
          Length = 405

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 61/167 (36%), Gaps = 6/167 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
            D       +   + AG+P+S+A+ V+  Q+ +  +R   + V      GL LS+++ + 
Sbjct: 66  KDISVFCKQLYTMLNAGMPLSNALDVLGDQTENKVLRRTVKEVYSEVQTGLILSQAMKKH 125

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +  P          +    ++ GNL   LA +S        + +K++   +     +  
Sbjct: 126 KKVFPN-----LLITMVEAGEMTGNLDNVLAKMSEHYEKENKINSKIKGAMVYPAILSVA 180

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
              +   + T +  T          +  G   L ++ +  L     +
Sbjct: 181 AVGVVIFLLTFIMPTFTEMFTSSGVELPGPTKLLMSISDALKNYWYI 227



 Score = 42.8 bits (99), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 46/131 (35%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + +G+P+  A+      +++  V     +VIE    GLS+S  +  M     
Sbjct: 274 FTRTLSTLMASGIPIVPAMEAAANVTNNQVVIDGMNKVIEDVKKGLSISFLLKSM----- 328

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G+L E L+  +    +  +   +     +E     ++   + 
Sbjct: 329 -HFFPPMVISMVGIGEESGSLEEMLSKTADYYDEELDASIQKMLSLLEPMLILFMGVIVG 387

Query: 138 FCVSTLVYFTS 148
           F V +++    
Sbjct: 388 FIVISMMLPIF 398


>gi|304313087|ref|YP_003812685.1| General secretion pathway protein F [gamma proteobacterium HdN1]
 gi|301798820|emb|CBL47053.1| General secretion pathway protein F [gamma proteobacterium HdN1]
          Length = 404

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 52/187 (27%), Gaps = 17/187 (9%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65
           +R +    D       +   VRAG+P+  A+  +  QS    V S    V      G SL
Sbjct: 58  RRGSMGSADLALVTRQLATLVRAGIPIEGALRAVSKQSEKPKVASIMLAVRSRVVEGHSL 117

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             +++   +  P               +  G+L   L  LS     R   +  +Q   + 
Sbjct: 118 ESALAEFPQAFPD-----LYRATIGAGEHSGHLDLVLEQLSDYTESRHRTQRTIQGAMIY 172

Query: 126 AKASAWIIGSLPFCVSTLVYF-----------TSPGYMNVLINDPRGHMLLGVAAAFMLI 174
                     +   +   V               P    VLI           A   ++ 
Sbjct: 173 PIVLTAFAVLIVVGMLMFVVPKIVTVFESSGQQLPAMTQVLIGTSAFLQHWWWALLLVIG 232

Query: 175 GIMVMRL 181
             + +  
Sbjct: 233 LFVWLWR 239



 Score = 38.6 bits (88), Expect = 0.45,   Method: Composition-based stats.
 Identities = 14/129 (10%), Positives = 33/129 (25%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            +  +    R+G+P+ +A+ +    + +    E             L E  S        
Sbjct: 273 VVGTLAILSRSGVPLVEALRISSQVAGNLPIREAV-----SEAATKLREGSSLFTSLDQC 327

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G L   L   ++                 E      + G +  
Sbjct: 328 GYFPPMMMQMIASGESSGELDTMLTRAAQNQERELEEVIATIVGLFEPIMLVVMGGVVLI 387

Query: 139 CVSTLVYFT 147
            V +++   
Sbjct: 388 IVLSIMMPV 396


>gi|188590753|ref|YP_001922431.1| bacterial type II secretion system protein F [Clostridium botulinum
           E3 str. Alaska E43]
 gi|188501034|gb|ACD54170.1| bacterial type II secretion system protein F [Clostridium botulinum
           E3 str. Alaska E43]
          Length = 400

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/179 (11%), Positives = 54/179 (30%), Gaps = 12/179 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            D           + AG+P+   + ++  Q+++    E  + +E       +        
Sbjct: 62  KDLSIFCRQFYTMLDAGVPILTCLNILTSQTTNKKLQETLKEVEDDVEKGGV----LSDA 117

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +        +    +  GNL   +  ++        +  KV+   +       + 
Sbjct: 118 MRKHTEVFPGLLVSLVAAGEASGNLDSIMLRMANHYEKENKVSNKVRNAMIYPI---ILG 174

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHM-----LLGVAAAFMLIGIMVMRLMINFDV 187
                 V  ++ +  P + ++ I            LL  +A+      M++  ++   V
Sbjct: 175 LVAITAVVFILTYVMPTFTDLFIESGLSLPWSTRFLLWSSASLKAHWFMILLAIVGITV 233



 Score = 36.6 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 48/146 (32%), Gaps = 8/146 (5%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSL 65
           +R  + +         +   + +GLP+  A+ +++G   + +      +V E    G SL
Sbjct: 259 RRLNEMII-VSRFTRTLSTLLSSGLPLVQALDIVIGVIDNKIAEDAILKVKEKVVRGESL 317

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           + S+                  +    +  G+L + L   +    +      +     ME
Sbjct: 318 NSSLRETG------IFPQMLYSMIKIGEETGSLDDILNKTADFYDEELESTIQTTVALME 371

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGY 151
                 +   + F + +++      Y
Sbjct: 372 PALIVIMGLIIGFIIISIMIPMFDSY 397


>gi|148975967|ref|ZP_01812756.1| hypothetical Flp pilus assembly protein TadC [Vibrionales bacterium
           SWAT-3]
 gi|145964712|gb|EDK29965.1| hypothetical Flp pilus assembly protein TadC [Vibrionales bacterium
           SWAT-3]
          Length = 280

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 62/148 (41%), Gaps = 2/148 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           ++   K   +K     P  LD++   V+ G+ +  ++  +  + ++       ++     
Sbjct: 123 LQMRRKMLISKTSAQLPYLLDMMSVCVQTGMTIEASLVYLGKELAEFDSDLCYQIKRTSD 182

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
                 + ++++ +   +P   +  F   I    Q G ++++ L++L+  +R  + +  +
Sbjct: 183 SAKIHGVEKALNDLTERIPTPAIRSFVLTIIQNLQYGTSVAQTLSDLAEDMRKVQILTVE 242

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYF 146
            +   + AK S  +I  + F +  L+  
Sbjct: 243 EKVGKLSAKMSVPLILFIMFPIVILILA 270


>gi|121997134|ref|YP_001001921.1| type II secretion system protein [Halorhodospira halophila SL1]
 gi|121588539|gb|ABM61119.1| type II secretion system protein [Halorhodospira halophila SL1]
          Length = 406

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 56/165 (33%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
           D+           +RAG+PV  A+  +   +++  +      V +    G +L +++SR 
Sbjct: 67  DELVTFTRQFRALLRAGVPVVRALRGLGQNTANARLGRTLEEVAQGLESGQTLFDAMSRH 126

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +  P          +    +  G L E+L  ++  L   +  + +++A           
Sbjct: 127 PKTFP-----RLLLAMIRVGEESGQLEESLERMAASLDQERTTRERIKAALRYPTFVMIA 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           I +    ++  V        + +  D      L +  +   +   
Sbjct: 182 IIAALVVINLFVIPPFADLFDGMGTDLPAMTALLIGFSEGFVEYW 226



 Score = 42.0 bits (97), Expect = 0.037,   Method: Composition-based stats.
 Identities = 14/132 (10%), Positives = 41/132 (31%), Gaps = 5/132 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                     +VR+G+P+  A+  +   + +   +   R I     G+   E + ++   
Sbjct: 272 LARFARTFSMAVRSGVPLLQAMDSVAEATDN---AHIARGIRDLRTGIERGEGLYQVAER 328

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
             L   +     +    +  G +++ +  ++           K  +  +E     +I   
Sbjct: 329 SGL--FTPLVLQMLAVGEETGQVADMMDQVAEFYEREVEEDLKKLSSYIEPFVIGFIGVL 386

Query: 136 LPFCVSTLVYFT 147
           +      +    
Sbjct: 387 VLILALGIFMPM 398


>gi|126658485|ref|ZP_01729633.1| type II secretion system protein [Cyanothece sp. CCY0110]
 gi|126620227|gb|EAZ90948.1| type II secretion system protein [Cyanothece sp. CCY0110]
          Length = 404

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 59/166 (35%), Gaps = 6/166 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                   + AG+ +   + V+  Q ++  ++     +      G+SLSE++ +      
Sbjct: 69  FSRQFSVMINAGVAIVRCLGVLSEQATNPKLKKALSAISAEVQQGISLSEALEKHPSC-- 126

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    + GG L E L  L+++L D   ++ ++++          +   + 
Sbjct: 127 ---FDQLYVSMVEAGETGGVLDEVLNRLAKLLEDMARLQNQIKSAMAYPVTVGILAVIVF 183

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           F ++  +     G    L  +        +  + ++    ++  ++
Sbjct: 184 FAMTIFLIPVFAGIFEDLGAELPALTQFMLYLSSIMRSWKILIPIV 229



 Score = 36.6 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/134 (8%), Positives = 38/134 (28%), Gaps = 7/134 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
              +     R+G+P+  ++ ++     +  + +           G  +S ++        
Sbjct: 273 FCRVFGTLTRSGVPILTSLEIVCNTVGNKVISNAVAGAQAEIQQGGMMSLALQNA----- 327

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +  +    +  G L   +  ++    D      K     +E      I G + 
Sbjct: 328 -NVFPQLAIQMICIGEETGELDAMMMKVADFYEDEVEQAVKALTSIIEPLMMVGIAGMVG 386

Query: 138 FCVSTLVYFTSPGY 151
             + ++       +
Sbjct: 387 VILLSMYLPMFSIF 400


>gi|116671217|ref|YP_832150.1| type II secretion system protein [Arthrobacter sp. FB24]
 gi|116611326|gb|ABK04050.1| type II secretion system protein [Arthrobacter sp. FB24]
          Length = 313

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 63/154 (40%), Gaps = 2/154 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   IK+R    + +FP+  +++  +V AG   + A+  +   S   +  EF  V+    
Sbjct: 158 LGSQIKRREKLMMAEFPSLAELMALAVSAGESATGALDRVCRSSHGELAREFELVLGETR 217

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L E++ R      L  +  F   I V  + G  L++ L   ++ +RD    K  + 
Sbjct: 218 AGKPLVEALQRFSARTDLGPLVRFVDGIIVAVERGTPLADVLRAQAQDVRDTA--KRDLM 275

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
             + + + +  +         T+++   PG   +
Sbjct: 276 ESAGKKEIAMMVPLVFGVLPLTVIFAVFPGLAAI 309


>gi|311744031|ref|ZP_07717837.1| integral membrane protein [Aeromicrobium marinum DSM 15272]
 gi|311313161|gb|EFQ83072.1| integral membrane protein [Aeromicrobium marinum DSM 15272]
          Length = 289

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 68/182 (37%), Gaps = 2/182 (1%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR    L+      + +  ++   + +  A+      ++  +  +   + +   +   L
Sbjct: 93  EKRAIAKLEGLAAWTESLRDTIAGAVGLEQAIPATAYAAAPSIAPQLTILADRLRVRTPL 152

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++ R    +           + + ++  G  L + L +L+   R+   M+ +V A   
Sbjct: 153 PVALQRFADDLDDPSADLIVAALMLNAKLRGPGLRDVLTSLADSAREELEMRRRVGAGRA 212

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
             + S  I+ ++       +   +  Y+    +   G ++L V   F + G   MR + +
Sbjct: 213 STRRSVQIVMAISIAFVFGLTLFNRDYVEP-FSSALGQVVLLVVMLFFVAGFAWMRRLSD 271

Query: 185 FD 186
           F+
Sbjct: 272 FE 273


>gi|51595055|ref|YP_069246.1| type IV pilin biogenesis protein [Yersinia pseudotuberculosis IP
           32953]
 gi|153948491|ref|YP_001402329.1| type IV pilin biogenesis protein [Yersinia pseudotuberculosis IP
           31758]
 gi|51588337|emb|CAH19945.1| putative outer membrane protein export (MTB) sytem, hofC subunit
           [Yersinia pseudotuberculosis IP 32953]
 gi|152959986|gb|ABS47447.1| putative protein transport protein HofC [Yersinia
           pseudotuberculosis IP 31758]
          Length = 399

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 56/177 (31%), Gaps = 10/177 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72
           +        +   ++AGLP+ +++ ++  ++ D         + +    G SLSE + + 
Sbjct: 59  ERLVAMTRQLATLLQAGLPLVNSLQLLAKEADDSAWRCLLDEISQQVAQGQSLSEVMEQY 118

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +L GNL +    L      ++N+  KV            +
Sbjct: 119 P-----HVFPRLYPPVVAVGELTGNLEQCCTQLVHHQERQQNLHKKVIKALKYPVVVCIV 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHM--LLGVAAAFMLIG--IMVMRLMINF 185
              +   +  +V                G    LL ++      G  + ++  ++  
Sbjct: 174 ALVVSVIMLVMVLPEFAQIYQSFDTPLPGLTASLLWLSTFLTFYGPYLALIIAIVCI 230



 Score = 42.4 bits (98), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 37/133 (27%), Gaps = 5/133 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                  +  + +AGLP+S  +        +    +  R I+ Q     +S+ I      
Sbjct: 265 LSQIFQTLAITQQAGLPLSAGLDAAARSIHNYNYQQALRCIQKQ-----ISQGIPLYTTL 319

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                       +    +  G+L   L  L+   + +    A      +E      I   
Sbjct: 320 NQHPLFPAICQQLIRVGEESGSLDVLLEKLACWHQQQTQNLADNVTQMLEPLLMLIIGSI 379

Query: 136 LPFCVSTLVYFTS 148
           +   V  +     
Sbjct: 380 VGVLVIAMYLPIF 392


>gi|28572730|ref|NP_789510.1| hypothetical protein TW582 [Tropheryma whipplei TW08/27]
 gi|28410863|emb|CAD67248.1| putative membrane protein [Tropheryma whipplei TW08/27]
          Length = 294

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 72/181 (39%), Gaps = 4/181 (2%)

Query: 7   KRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +R      + +P+ ++ ++ +VR G+ + +A+  +       +R  F  +        + 
Sbjct: 108 RRLVSLDSNIWPDIVENVISAVRVGMGLPEALCSLSRFGPVRIRQIFCNLENEYGATGNF 167

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSM 124
           + +++     +   +       + +   LGG+ L + L NLS  +R+    +A++     
Sbjct: 168 ASAVANAKCALADPKADRILETVQLARSLGGSELIKVLRNLSEYMREDLATRAEIVGRQS 227

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
               +A I  + P+ V  ++   +        N   G +++ + A    I   +M ++  
Sbjct: 228 WVVNAARIAVAAPWAVLAIMSTRAETVSA--YNSQAGVVVIILGALSCAIAYKIMMVVAR 285

Query: 185 F 185
            
Sbjct: 286 I 286


>gi|57233905|ref|YP_182063.1| pilin biogenesis protein, putative [Dehalococcoides ethenogenes
           195]
 gi|57224353|gb|AAW39410.1| pilin biogenesis protein, putative [Dehalococcoides ethenogenes
           195]
          Length = 401

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/164 (11%), Positives = 57/164 (34%), Gaps = 6/164 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRM 72
            +       +   + +G  +  ++ ++  Q+++ +  E    ++     G SLS ++S+ 
Sbjct: 62  REVILFSRQLALLLESGTDIVTSLELLQEQTTNKLFREIIGEIVNDIRGGSSLSLAMSKH 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +  P          +    + GG+L   L NL+  ++     + K+++        A +
Sbjct: 122 PKAFPPLYHR-----VIAAGEQGGSLEVVLRNLANFVQRNVETEKKIKSALTYPSVVAVV 176

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
              +   + T V        + +  +      + +  +      
Sbjct: 177 GILVLLLMVTFVLPAFTSLYSQMGTELPAATRILIGISDFFGAW 220



 Score = 34.3 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 7/140 (5%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSE 67
               L +   A   +    +AGLP+ + +      +++ + S     V      G  LS 
Sbjct: 260 RILLLSELSRACQTMSLLFKAGLPLPEIMNQTTAAANNKLISNALAEVQHDLIRGEGLSR 319

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
            +++   ++P+         +    +  G L + LA +S       + +       ++  
Sbjct: 320 PMTKNPLFLPM------MVQMVSVGEETGKLDDTLATVSATYDTEADDRISSAIGMIQPV 373

Query: 128 ASAWIIGSLPFCVSTLVYFT 147
            +  I   + F    LV   
Sbjct: 374 MTIAIGLIVGFIAVALVSSM 393


>gi|301165488|emb|CBW25059.1| pilus-assembly protein [Bacteriovorax marinus SJ]
          Length = 406

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 61/158 (38%), Gaps = 10/158 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D  N    +   + AG+P+  A+ +I   +    ++   + +      G +++E++ + 
Sbjct: 68  KDLANFTKQLSIMINAGVPILQALEIIFKSEKQPTLKKSVKNIARDVGEGQTIAEAMEK- 126

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 +  +     +    + GG L E L  LS  L  ++  KA+V++  M       +
Sbjct: 127 -----QKGFNKLYCNLVKAGEAGGILDEILEKLSVHLEKQEKTKAQVKSAMMYPFIVTLV 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
              + +    ++ F  P ++ +L +  +    +     
Sbjct: 182 GFGVIWG---MMVFVVPQFVGMLADTGQEPPWITQMVI 216


>gi|225351468|ref|ZP_03742491.1| hypothetical protein BIFPSEUDO_03063 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157812|gb|EEG71095.1| hypothetical protein BIFPSEUDO_03063 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 424

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 57/181 (31%), Gaps = 22/181 (12%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
            DF      +   V AG+ +  A+ ++  Q  +  +R+  R  ++    G S SE++   
Sbjct: 81  KDFAVMSRQLATMVAAGVSLIRALNIVTEQIGNVKLRNAVRDCMQQVEAGSSFSEAMDNN 140

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             ++           +    + GG L ++L  ++        ++ +++           I
Sbjct: 141 PDHLFPP----IMINMVRAGETGGFLDKSLITVADSFEADVRLQGQIKGALAYPVVVLGI 196

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIND---------------PRGHMLLGVAAAFMLIGIM 177
              L   +   +          +  +               P G  ++ V A   +  + 
Sbjct: 197 AVLLVGVMLLTIVPMFDSMYASMGAELPWVTQIMVDMGKTAPVGIPVIIVCAVAFV--MF 254

Query: 178 V 178
            
Sbjct: 255 W 255



 Score = 42.8 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/137 (10%), Positives = 39/137 (28%), Gaps = 5/137 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                 +     + +G+P+  A+ ++   S + V  E  +      +   +         
Sbjct: 286 ALARFCNNFTSMLASGVPILQALDIVGSTSGNYVIDEASK-----RVSRLVERGYRLADS 340

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
               +        +    +  G + + LA+  +   +     AK     +E      +  
Sbjct: 341 MGTEKVFPNMMVQMVAIGEDSGAIDQMLASAGKAYDEEAQSIAKQLTSLLEPLMILVLGS 400

Query: 135 SLPFCVSTLVYFTSPGY 151
            + F V  L       +
Sbjct: 401 VVGFMVVALYMPMFSMF 417


>gi|307133501|dbj|BAJ19013.1| TadC [Aggregatibacter actinomycetemcomitans]
          Length = 288

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 69/157 (43%), Gaps = 4/157 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +  ++K +  K ++D    +D++  +V+ G+ +  A+  +              ++    
Sbjct: 130 IGSILKAKIKKIMNDLAGFIDLVAVNVQTGISIEAALKQVATDFKTLNPDLTYVMLRIIR 189

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +     +S+++  +   +P  E+  F TV+      G ++   L  LS  +R+ + +  +
Sbjct: 190 KSEITGMSQALQDLSVSLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSTDIREIQLLAIE 249

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            +  ++ AK S  +I  + F +  L+   +PG M V 
Sbjct: 250 EKLGTLSAKMSIPLILFIMFPIIILI--LAPGVMRVF 284


>gi|258544197|ref|ZP_05704431.1| 3-isopropylmalate dehydrogenase [Cardiobacterium hominis ATCC
           15826]
 gi|258520573|gb|EEV89432.1| 3-isopropylmalate dehydrogenase [Cardiobacterium hominis ATCC
           15826]
          Length = 405

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 50/154 (32%), Gaps = 10/154 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIETQHLGLSLSESISRMVRYM 76
               +   +RAG+PV  A+ ++      P  +R     + E    G +L+E++       
Sbjct: 70  FTRQMATMLRAGMPVLRALDLVGESIEKPLAMREMVFDLYERIQNGATLAEAMRAHPLQ- 128

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
                    T +    +  G L   + N++  L   +  K KV+           ++   
Sbjct: 129 ----FDDLYTSLIAAGEDAGMLESTMDNIALNLEKGEATKKKVKKALTYPA---IVMVFA 181

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
               + L+    P +    +++      L     
Sbjct: 182 IIVTAILLINVVPVFAQFFLSNGGELPWLTQFVV 215



 Score = 40.1 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/131 (9%), Positives = 38/131 (29%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+   +      +   +       + +    G  +S ++        
Sbjct: 275 FARTMSTLFNAGVPLMRGLQATAPATGSVLYERAVYEIRDDVQNGQQMSFAMKNTGL--- 331

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +  ++   +  GNL E L  ++    +  + +       +E    A++   + 
Sbjct: 332 ---FPTIAVQMTAIGEESGNLGEMLGRVATYYEEELDWRIDNLTAMIEPAIMAFLAVVVG 388

Query: 138 FCVSTLVYFTS 148
             +  +     
Sbjct: 389 GLIIAMYLPIF 399


>gi|114777392|ref|ZP_01452389.1| type II secretion system protein [Mariprofundus ferrooxydans PV-1]
 gi|114552174|gb|EAU54676.1| type II secretion system protein [Mariprofundus ferrooxydans PV-1]
          Length = 397

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 49/166 (29%), Gaps = 6/166 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
             D       +   + AGLP+     +    +    +      V +    G  L E++ +
Sbjct: 58  DKDISIFFRQLSTMINAGLPLVQCFELAERGTEKKAMVKLLADVRQNLEGGNPLGETMRK 117

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +     E    +  +    + GG L   L  L         +KAK+++  +   A   
Sbjct: 118 YPK-----EFDRLTCALVEAGEQGGILDTILLRLCVYKEKALALKAKIKSAMVYPIAILT 172

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +   +   +   V          +         + +A + + +   
Sbjct: 173 VSFIVTAILMIFVIPVFGEMFADVGAQLPAPTRITMAVSDIFVAYW 218



 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 40/130 (30%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
                     AG+P+ +A+  +   S + V  E     +          +     +  P+
Sbjct: 267 FCRTFSTLSAAGVPILEALDTVAETSGNVVIEEVILSSKESISQGQTLTAPLEASKIFPV 326

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                  T +    +  G++ E LA ++    +  +         ME     ++ G +  
Sbjct: 327 -----MVTQMISIGEQTGSMEEMLAKIADFYEEEVDTAVDNMQQLMEPVIMVFLGGVIGG 381

Query: 139 CVSTLVYFTS 148
            V ++     
Sbjct: 382 LVISMYLPIF 391


>gi|94499731|ref|ZP_01306268.1| general secretion pathway protein F [Oceanobacter sp. RED65]
 gi|94428485|gb|EAT13458.1| general secretion pathway protein F [Oceanobacter sp. RED65]
          Length = 404

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 50/159 (31%), Gaps = 9/159 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72
            D       +   + AGLP+ +A+     Q+           V      G SL+ +++  
Sbjct: 65  ADLALLTRQLSTLIGAGLPIEEALRATADQTEKRRIKTMIMDVRSKVLEGHSLANALNDF 124

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P               +  G+L   L  L+  +   +  + K++  ++       +
Sbjct: 125 SYAFPQ-----LYRATVAAGEHAGHLDTVLNRLADYMERAQENQQKIKLAAVYPI---IL 176

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
                  V  L+ +  P  + V + + +   +L      
Sbjct: 177 CIVAIAIVVGLLTYVVPDIVEVFVKNGQELPVLTRVMIS 215



 Score = 38.9 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/129 (10%), Positives = 37/129 (28%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            +  +     +G+P+ +A+ +      + V  E  +         S++E  +        
Sbjct: 273 FISTLAILNSSGVPLVEAMRIASQVVGNEVIKERLK-----EASQSVTEGGALHTALEKT 327

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +  S     +    +  G L   L   ++   +             E      + G +  
Sbjct: 328 KVFSPIMLHMVASGETSGELDSMLEKTAKNQENDLQNTVSTLVSMFEPIMLLAMGGIVVL 387

Query: 139 CVSTLVYFT 147
            V  ++   
Sbjct: 388 IVIAIMLPI 396


>gi|325963896|ref|YP_004241802.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469983|gb|ADX73668.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 313

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 63/154 (40%), Gaps = 2/154 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   +K+R  + + +FP+  +++  +V AG   + A+  +   +   +  EF  ++    
Sbjct: 158 LGAQVKRRETRMMAEFPSLAELMALAVSAGESATGALDRVCRSAKGELSREFSNILAETR 217

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L +++        L  +  F   I V  + G  L++ L   ++ +RD    K  + 
Sbjct: 218 AGKPLVQALQEFSARTDLAPLVRFVDGIVVAVERGTPLADVLRAQAQDVRDTA--KRDLM 275

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
             + + + +  +         T+V+   PG   +
Sbjct: 276 EAAGKKEIAMMVPLVFGVLPLTVVFAVFPGLAAI 309


>gi|323489975|ref|ZP_08095196.1| hypothetical protein GPDM_11510 [Planococcus donghaensis MPA1U2]
 gi|323396271|gb|EGA89096.1| hypothetical protein GPDM_11510 [Planococcus donghaensis MPA1U2]
          Length = 403

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 61/172 (35%), Gaps = 6/172 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
            D F   L      +RAG+ + D+V ++  Q    P++     + E    G SLS S+++
Sbjct: 61  RDQFIMFLRQFSTLMRAGVTIVDSVHILSQQVESKPLQRALAEIAEELRKGNSLSNSLAK 120

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +          +  +    +L GN+ E+L +L+         + KV +          
Sbjct: 121 YPKIFEP-----LTINLVKAGELAGNIDESLDSLATHYDKAYQTRQKVISAMSYPVVVGI 175

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           +   +   + + +        +    +        + A+  + G   + L+ 
Sbjct: 176 LAIGVVIFLLSSIVPMFADMFSGFGGELPLITQFVMGASDFVQGYWYLLLLA 227


>gi|317051457|ref|YP_004112573.1| general secretion pathway protein F [Desulfurispirillum indicum S5]
 gi|316946541|gb|ADU66017.1| general secretion pathway protein F [Desulfurispirillum indicum S5]
          Length = 406

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 65/161 (40%), Gaps = 9/161 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
           +D       +   ++AGLPV +A+  +  Q+  + VRS    V      G SL++S+++ 
Sbjct: 67  NDLSLCTRQMATLIQAGLPVEEALKAVAAQTEKNRVRSILLGVRAKVMEGYSLAKSLAQY 126

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R  P    S  +       +  G+L   L  L+     ++  + KVQ   +       +
Sbjct: 127 PRAFPDLYRSTVAA-----GEHAGHLDLVLERLADYTEGQQRSRQKVQLALLYPA---IL 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             +    V+ L+ +  P  + V ++  +    L +A   + 
Sbjct: 179 TVTSILIVTFLLGYVVPDVIKVFVDTGQELPGLTIALISLS 219



 Score = 38.6 bits (88), Expect = 0.46,   Method: Composition-based stats.
 Identities = 13/129 (10%), Positives = 36/129 (27%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +    ++G+P+ +A+ +      +    E      +  +G  +SE  S  +     
Sbjct: 275 FASTLSILAQSGVPLVEAIRIAGQVLGNDFIKE-----RSMDIGRMVSEGESLHLALDKA 329

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +        +    +  G L   L+ ++                  E      +   +  
Sbjct: 330 KCFPPMMIHMVASGESSGELDTMLSRVAANQERDMESLVATFVGLFEPFMLVVMGTVVLL 389

Query: 139 CVSTLVYFT 147
            V  ++   
Sbjct: 390 IVLAILMPI 398


>gi|167717374|ref|ZP_02400610.1| general secretion pathway protein F [Burkholderia pseudomallei
           DM98]
          Length = 352

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 69/188 (36%), Gaps = 17/188 (9%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +   + +R              +   + AGLP+ +A+AV+  Q+  D +R     +    
Sbjct: 6   LGRKLSQREQAI------LTRQLASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEV 59

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G SL+ ++++  R     +       +    +  G L   L+ L+  + +R  +K K+
Sbjct: 60  LGGHSLANALTQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEERNALKQKI 114

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIM 177
                       I   +   V+ L+ +  P  +NV  +  +   +L +   A    +   
Sbjct: 115 LLAFTYPAIVTVIAFGI---VTFLLSYVVPQVVNVFASTKQQLPVLTIVMMALSDFVRHW 171

Query: 178 VMRLMINF 185
              ++I  
Sbjct: 172 WWAILIGI 179


>gi|78484597|ref|YP_390522.1| general secretion pathway protein F [Thiomicrospira crunogena
           XCL-2]
 gi|78362883|gb|ABB40848.1| Type II secretion pathway protein F [Thiomicrospira crunogena
           XCL-2]
          Length = 404

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 59/181 (32%), Gaps = 15/181 (8%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            D       I   + AG+P++DA+  +  Q+ + +   F   I  +              
Sbjct: 65  ADLSLMTRQIFTLLGAGMPMADALRSVANQAENKLMKRFATGIFEKVS----EGHSYAQA 120

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                  +           +  G+L E L+ ++  +  ++ ++ K+++  +       + 
Sbjct: 121 LTSSGFNLPRDYVATVRAGEESGHLVEVLSRMAESIEKQEKIRKKMRSALIYPTLMVVMA 180

Query: 134 GSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLL---------GVAAAFMLIGIMVMRLM 182
            ++   +   V        + +  +  P    LL                 IG++V+  M
Sbjct: 181 VAIILFLMAFVVPKVVSVFDNMNQNLPPLTQGLLNTSDFLDQHWGWLLLGSIGLIVVYKM 240

Query: 183 I 183
           +
Sbjct: 241 L 241


>gi|220931443|ref|YP_002508351.1| Tfp pilus biogenesis protein PilC [Halothermothrix orenii H 168]
 gi|219992753|gb|ACL69356.1| Tfp pilus biogenesis protein PilC [Halothermothrix orenii H 168]
          Length = 401

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 58/170 (34%), Gaps = 12/170 (7%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISR 71
             D           + AG+ + +A+ ++  Q   P   E  R + E    G SL++++ +
Sbjct: 62  TKDLVLFTQQFSVLLNAGISLVEALDIMYDQVEHPRLKEVVRSIQEDVETGSSLTDALLK 121

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P          +    + GG L + L  LS     +  + +KV++          
Sbjct: 122 HPDVFP-----ELYCQMVKAGEAGGVLDQVLEQLSAHYERQDEINSKVKSAMYYPV---I 173

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGIMV 178
           ++      V  L+    P ++++  +      L   + +  +  L     
Sbjct: 174 LLVVAVGVVIFLMTRVVPQFISLFSSMDVELPLPTRILIKLSTFLSSYWW 223



 Score = 37.4 bits (85), Expect = 0.83,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 42/136 (30%), Gaps = 5/136 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
             + +   + +G+ +  A+A++     +     F  VI      +S   S+SR +     
Sbjct: 271 FTNTLSILLTSGIDIISALAIVEEVVGN---KVFSDVISRSRTQVSEGISLSRPLDESG- 326

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
            E       +    +  G+L   L  +S                 +E      +   + F
Sbjct: 327 -EFPRMVIQMINVGEEAGSLDNMLQKVSDFYDKEVETSINNTVSLIEPLMIVVLAVIVGF 385

Query: 139 CVSTLVYFTSPGYMNV 154
            V +++      Y   
Sbjct: 386 IVMSIILPMFEMYEQF 401


>gi|145600186|ref|YP_001164262.1| type IV pilin biogenesis protein [Yersinia pestis Pestoides F]
 gi|294505133|ref|YP_003569195.1| type II secretion system protein [Yersinia pestis Z176003]
 gi|108774474|gb|ABG16993.1| type II secretion system protein [Yersinia pestis Nepal516]
 gi|108780833|gb|ABG14891.1| putative type II secretion system protein [Yersinia pestis Antiqua]
 gi|145211882|gb|ABP41289.1| type II secretion system protein [Yersinia pestis Pestoides F]
 gi|262363194|gb|ACY59915.1| type II secretion system protein [Yersinia pestis D106004]
 gi|262367126|gb|ACY63683.1| type II secretion system protein [Yersinia pestis D182038]
 gi|294355592|gb|ADE65933.1| type II secretion system protein [Yersinia pestis Z176003]
          Length = 378

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 56/177 (31%), Gaps = 10/177 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72
           +        +   ++AGLP+ +++ ++  ++ D         + +    G SLSE + + 
Sbjct: 38  ERLVAMTRQLATLLQAGLPLVNSLQLLAKEADDSAWRCLLDEISQQVAQGQSLSEVMEQY 97

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +L GNL +    L      ++N+  KV            +
Sbjct: 98  P-----HVFPRLYPPVVAVGELTGNLEQCCTQLVHHQERQQNLHKKVIKALKYPVVVCIV 152

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHM--LLGVAAAFMLIG--IMVMRLMINF 185
              +   +  +V                G    LL ++      G  + ++  ++  
Sbjct: 153 ALVVSVIMLVMVLPEFAQIYQSFDTPLPGLTASLLWLSTFLTFYGPYLALIIAIVCI 209



 Score = 41.3 bits (95), Expect = 0.059,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 36/133 (27%), Gaps = 5/133 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                  +  + +AGLP+S  +        +    +  R I+ Q     +S+ I      
Sbjct: 244 LSQIFQTLAITQQAGLPLSAGLDAAARSIHNYNYQQALRCIQKQ-----ISQGIPLYTTL 298

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                       +    +  G+    L  L+   + +    A      +E      I   
Sbjct: 299 NQHPLFPAICQQLIRVGEESGSQDVLLEKLACWHQQQTQNLADNVTQMLEPLLMLIIGSI 358

Query: 136 LPFCVSTLVYFTS 148
           +   V  +     
Sbjct: 359 VGVLVIAMYLPIF 371


>gi|327400021|ref|YP_004340860.1| Type II secretion system F domain-containing protein [Archaeoglobus
           veneficus SNP6]
 gi|327315529|gb|AEA46145.1| Type II secretion system F domain protein [Archaeoglobus veneficus
           SNP6]
          Length = 627

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 61/155 (39%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  +  +R  K  +  P+ L  +     +GL +  A+ ++   +   + SE  ++ +   
Sbjct: 404 LVEIRNRRVRKIEEHIPDFLKQLASLNESGLNIVSAIRILSTSNLGVLTSEIIKIRKDLE 463

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ LS+++ R  R +    V+  ++++    +  G + +AL   +   +    +K +V+
Sbjct: 464 WGMLLSDALKRFERRIGSMTVTKVTSILLRAMEAAGTIKDALFTAATDAQLYLELKKRVR 523

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                     ++   +      ++        + +
Sbjct: 524 NEMFVYIVVIYMTFGVFLFTIFVLSNNFMQIFSKM 558



 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 68/181 (37%), Gaps = 6/181 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQHL- 61
              R  +    FP+ +++++   R G+ V +   VI  + S    V  EF  ++    + 
Sbjct: 121 ASHRRKQIEVVFPHVVNMMLGMSRGGISVLEMCRVIAEEVSVTGEVGKEFAVIVNGVEMF 180

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
              L  ++  +    P Q  + F        +  G LSE L   S+ L D +     +  
Sbjct: 181 HKDLISAMKYVASTTPSQRFADFLDDFVSVIEGSGRLSEFLDFKSKHLMDEREKYQDLFL 240

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            S+   A  ++   +   +  L+ F     M +L +     M L +     + G+  + L
Sbjct: 241 NSLGILAEVYVAALVVAPLFMLIIFVV---MGMLGSTTMHLMQLLIYLYMPIGGLAFIWL 297

Query: 182 M 182
           +
Sbjct: 298 L 298


>gi|312794851|ref|YP_004027773.1| general secretion pathway protein F [Burkholderia rhizoxinica HKI
           454]
 gi|312166626|emb|CBW73629.1| General secretion pathway protein F [Burkholderia rhizoxinica HKI
           454]
          Length = 405

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 67/180 (37%), Gaps = 13/180 (7%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSE 67
                 +       +   + AGLP+ +A+AV+  Q+  + +R     +      G SL+ 
Sbjct: 61  RKLSQREQALFTRQLASLLIAGLPLDEALAVLTDQAEREYIRELIAAIRAEVLGGQSLAG 120

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++++  R     +       +    +  G L   L+ L+  +  R  +++K+Q       
Sbjct: 121 ALAQHPR-----DFPDIYRALVSAGEHTGKLGLVLSRLADYIEQRNALRSKIQLAFTYPA 175

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI----GIMVMRLMI 183
               +       V+ L+ +  P  ++V  +  +   LL V    +      G   + L++
Sbjct: 176 ---IVTLVAFGIVTFLLSYVVPQVVSVFASTKQQLPLLTVMMMSLSSFVRHGWWAILLIV 232


>gi|319791843|ref|YP_004153483.1| general secretion pathway protein f [Variovorax paradoxus EPS]
 gi|315594306|gb|ADU35372.1| general secretion pathway protein F [Variovorax paradoxus EPS]
          Length = 412

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 58/169 (34%), Gaps = 13/169 (7%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVR 74
                  +   V +GLP+  A+  +  ++  +P R+    +    + G   + ++S   R
Sbjct: 75  LAVWTRQLAGLVSSGLPLERALTALTDEAESEPQRNLVASLRAEVNAGSPFARALSAHSR 134

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                E S   T +    +  GNL   L  L+  L +R+ ++ K+   ++       +  
Sbjct: 135 -----EFSPIYTAVIGAGEQSGNLGLVLDRLADDLEERQALQQKLVGAALYPA---IVTL 186

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI----MVM 179
                V  LV +  P    V     R    L      +  G+      M
Sbjct: 187 VAIVIVIFLVSYVVPQVAQVFAGTKRSLPFLTTVMLSLSAGVRNYGWWM 235



 Score = 37.4 bits (85), Expect = 0.91,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 40/130 (30%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       S+          +     G  L+ ++++  R+  
Sbjct: 281 FASTLAMLATAGVPILRALQAAAETLSNRAMRADALDALVLVREGAPLASALAQKKRFPG 340

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                   ++ +   +  G L   L   +  L      +A   A  +E      + G + 
Sbjct: 341 ------LVSMFARLGEQTGTLPLMLQRAANQLGAEVQRRAMHLATILEPLLIVAMGGVVM 394

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 395 LIVLAVMLPI 404


>gi|326771892|ref|ZP_08231177.1| type II secretion system protein F domain-containing protein
           [Actinomyces viscosus C505]
 gi|326638025|gb|EGE38926.1| type II secretion system protein F domain-containing protein
           [Actinomyces viscosus C505]
          Length = 317

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 53/146 (36%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   + KR ++     P+ ++++  +V AG     A+  IV      +  E    +    
Sbjct: 162 LSRAVAKRLSRIEAQLPDVVELLALAVGAGQGPVPAIERIVALGRGDLVDELSSTLTDIR 221

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  LS ++ RM R +    V+     I V  + G  L+E L + +  +R+        +
Sbjct: 222 SGTVLSTALDRMERRVGSVHVTRLCEAIIVALERGTPLAEVLRSQATDVREAARQDLMEE 281

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146
               E      ++  +         F
Sbjct: 282 GGRREIAQMVPVVFLVLPITVVFALF 307


>gi|295399389|ref|ZP_06809371.1| Type II secretion system F domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978855|gb|EFG54451.1| Type II secretion system F domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 417

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 58/173 (33%), Gaps = 6/173 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
            DF   L      ++AG+ + D+  ++  Q+    ++     V E+   G  LS + ++ 
Sbjct: 77  QDFVIFLRQFATLIKAGVSIVDSTRILAEQTESKALKKALMEVEESLRAGNPLSAAAAKH 136

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R  P          +    + GGN+ E L  L+         + K+ +      A A I
Sbjct: 137 PRIFP-----AMFVNMVKAGEAGGNMDETLERLADHFEKMHRTRQKIVSALTYPIAVAII 191

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             ++   +   V  T          +        + A+ ++     +  +   
Sbjct: 192 AVAVVIFLLVSVVPTFVEMFADFHAELPAITKFVLRASEVMQTYWWLVAIALI 244


>gi|284164235|ref|YP_003402514.1| type II secretion system F domain protein [Haloterrigena turkmenica
           DSM 5511]
 gi|284013890|gb|ADB59841.1| Type II secretion system F domain protein [Haloterrigena turkmenica
           DSM 5511]
          Length = 697

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/155 (11%), Positives = 54/155 (34%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +     +      L  +  S   GL + +++  +   +S  +  EF  +    + G SL 
Sbjct: 462 RHRNSVVSQLSEDLRKLSSSNDTGLTLLESLKAVSDTTSGKLAREFEMMHTKVNYGTSLK 521

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++        +  ++  + +I+   +    +S+ L   +R   +  +++ + ++ +   
Sbjct: 522 QALIEFNNKYHIPRLARTTRLITEAQEASNQISDVLRTAARASENHDDIERERKSRTRMQ 581

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
                +       V  ++       M  L     G
Sbjct: 582 VVIIIMTFMTVLAVIAILKTQFIDTMAGLGESTGG 616



 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/179 (11%), Positives = 59/179 (32%), Gaps = 3/179 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHL 61
               R  +      +++  +      GL   + +  +     +   V  EF+ +++    
Sbjct: 147 RASTRRRQINMLLTDSVSFMYALSVGGLNQLEIIEAMAQADDTYGEVAKEFQSIVKETEY 206

Query: 62  G-LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
             +    +I +     P  E+S F T +      GG++   L +           + ++ 
Sbjct: 207 FDIDYRTAIRKQALETPSDELSQFLTDMLSIVNSGGDMESFLEDKKEKHMRTAKQEQELT 266

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             ++E     ++  SL   +  ++           + +   +M +        +G ++M
Sbjct: 267 LETLELFGEMYMTLSLFPLLLIIIMVVMQMIPQASVTNTMLYMTVYALIPLTGVGFLIM 325


>gi|134291849|ref|YP_001115618.1| type II secretion system protein [Burkholderia vietnamiensis G4]
 gi|134135038|gb|ABO59363.1| type II secretion system protein [Burkholderia vietnamiensis G4]
          Length = 327

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 70/148 (47%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   I KR     +DFP+ALD++   V AGL +  A+  +  +    S+ V  E   ++ 
Sbjct: 160 LSRRITKRQRTIFEDFPDALDLLTVCVEAGLGLDAALMRVSEELRFRSEVVSGELDLLLL 219

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +     ++++  F  ++    + G +++E+L  LS +LR R+ M+A
Sbjct: 220 EMRSGFTKDTALRNLALRTGVEDIESFCAMLIQADRFGTSVAESLRVLSDMLRTRRRMRA 279

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A  +  K    +I  +   +  ++ 
Sbjct: 280 EERAARIALKLLFPLIFCIFPALMGVLL 307


>gi|260893568|ref|YP_003239665.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
 gi|260865709|gb|ACX52815.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
          Length = 409

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/179 (12%), Positives = 61/179 (34%), Gaps = 8/179 (4%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLS 66
           R      D           + AG+P+  ++ V+  Q+ +  ++     V      G SL+
Sbjct: 58  RLKAKSRDMAVLTRQFATLLEAGVPLLTSLRVLERQTKNRQLKKCLAEVAAEVQKGRSLA 117

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E+          + +      +    +  G L +AL  L+     + ++  K++  +   
Sbjct: 118 EAFG-----HHREILPEIFLSMVAVGETSGTLDKALGRLAAYFERQADLTDKLKTATSYP 172

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLIN--DPRGHMLLGVAAAFMLIGIMVMRLMI 183
              A +       +  L+          +         +++GV+   +    +++ +++
Sbjct: 173 LLVAGVALVTAIALLVLIVPIFADIFRQMNVPLPLPTRIVMGVSYGLVHYWYLILAVLV 231


>gi|332186805|ref|ZP_08388547.1| general secretion pathway protein F [Sphingomonas sp. S17]
 gi|332013138|gb|EGI55201.1| general secretion pathway protein F [Sphingomonas sp. S17]
          Length = 407

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 15/173 (8%), Positives = 44/173 (25%), Gaps = 5/173 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R    +         +    R   P+ +++  I  Q+           +           
Sbjct: 62  RARMSVKQLTLFTRQLATLNRV-SPLEESLRTITRQTEQERVRAIVATVHQGVTEGRR-- 118

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
                      +        +    +  G L   L  L+ +L  +  ++ K+        
Sbjct: 119 --LADAMAREPKSFPPLYRAMVAAGESSGTLPTILERLAALLERQAEIRGKLITALAYPT 176

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             A +   +   +   V        + +  +      + +  + +L+G   + 
Sbjct: 177 ILAVVALGVVTALMMFVVPQVVEQFDTVGQELPFLTRMVIGVSDLLVGWWWLM 229


>gi|104783252|ref|YP_609750.1| type II secretion system protein F [Pseudomonas entomophila L48]
 gi|95112239|emb|CAK16966.1| putative type II secretion system protein F [Pseudomonas
           entomophila L48]
          Length = 400

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 53/171 (30%), Gaps = 7/171 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R              +   V AG+P+ DA+A +  Q   P       V     L   L 
Sbjct: 53  RRQRLSRAQLCELTRQLATLVGAGIPLVDALATLERQLRQPALHAV-LVALRGSLAEGLG 111

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            + S   +  P          +    +  G L + LA L+  L   +  + K +   +  
Sbjct: 112 LARSLARQGQPFTG---LYCALVEAGERSGRLGQVLARLADHLEQVQRQRHKARTALIYP 168

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
                ++G     V  L+ F  P       +  +    +      +  G++
Sbjct: 169 A---VLMGVSLAVVVGLMTFVVPKLTEQFAHSGQSLPFITSLLIGLSQGLV 216



 Score = 36.6 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/128 (11%), Positives = 38/128 (29%), Gaps = 7/128 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +     +G+ + +A+ V      +        +V      G SL  ++    ++ P  
Sbjct: 270 RSLAILCGSGVALLEALQVATETVGNRRIRVAMEQVRLQVQGGTSLHRALDGAGQFPP-- 327

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                   +    +  G L++ L  ++         +        E      + G + F 
Sbjct: 328 ----LLVNMVGSGEASGTLADMLERVADDQERGFARQVDTAMALFEPLMILVMGGVVLFI 383

Query: 140 VSTLVYFT 147
           V  ++   
Sbjct: 384 VLAVLLPI 391


>gi|81300878|ref|YP_401086.1| fimbrial assembly protein PilC-like [Synechococcus elongatus PCC
           7942]
 gi|81169759|gb|ABB58099.1| fimbrial assembly protein PilC-like [Synechococcus elongatus PCC
           7942]
          Length = 410

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 59/149 (39%), Gaps = 6/149 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   V AG+P+  A+ ++  Q+ +  +R   +++      GL+LS+S+ + 
Sbjct: 68  KDMALFSRQLSSLVDAGVPIVRALGLLTEQTRNPKLRKTLKQINIDVQEGLNLSDSMRKF 127

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +             +    + GG L + L  LS++L D   ++ ++++      A   I
Sbjct: 128 PK-----VFDGLYVAMIQAGETGGVLDDVLNRLSKLLEDMSRLRNQMKSAMTYPMAVFVI 182

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
              +   ++  +  T  G       +  G
Sbjct: 183 AILVFLGMTIFIIPTFAGIFEDQGAELPG 211



 Score = 39.7 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/133 (10%), Positives = 36/133 (27%), Gaps = 5/133 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
                    RAG+P+  A+ ++   + +   +        +     +        R  PL
Sbjct: 278 FCRTFGSLTRAGVPIMTALEIVRDTAGNQAIARSIDAARMEVQTGGMMSVALSRYRVFPL 337

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                 +  +    +  G L   +  ++    D      K     +E      + G +  
Sbjct: 338 -----MALSMITIGEETGELDTMVNKVADFYEDEVEQAVKGLTSLLEPIMIVLVGGIVGS 392

Query: 139 CVSTLVYFTSPGY 151
            +  +       +
Sbjct: 393 ILLAMYLPMFSIF 405


>gi|160897511|ref|YP_001563093.1| type II secretion system protein [Delftia acidovorans SPH-1]
 gi|160363095|gb|ABX34708.1| type II secretion system protein [Delftia acidovorans SPH-1]
          Length = 334

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 69/158 (43%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS---EFRRVIE 57
           ++   K R  + +++ P  +D++      GL V  ++ ++  +    +R    E     +
Sbjct: 170 LRSRAKGRREQVVEELPLFVDLLRLLQGVGLSVDQSLQILASEFKSVLRVISGELALANQ 229

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
             + G +  +S  RMV      ++S    ++    + GG + E L   S  LR+++    
Sbjct: 230 LYNTGRTREQSFQRMVNMSADDDMSAIVNLLVQVDKHGGAVQEPLREFSIRLREKRQASF 289

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           K +  S+  K +  ++ +L   +  LV    PG++ V+
Sbjct: 290 KEKIGSITVKMTGVMVLTLLPAL--LVITAGPGFLAVI 325


>gi|57641786|ref|YP_184264.1| hypothetical protein TK1851 [Thermococcus kodakarensis KOD1]
 gi|57160110|dbj|BAD86040.1| hypothetical membrane protein, conserved [Thermococcus kodakarensis
           KOD1]
          Length = 305

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 70/188 (37%), Gaps = 10/188 (5%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
             + KR  +     P+A   +  S+RAG+  S+A+  +       +  EF+R +   + G
Sbjct: 86  WRLTKRIDEIEKSLPDAFFYLASSLRAGISFSEALEELTTAKFGALTEEFKRTVAEINKG 145

Query: 63  LSLSESISRMV-RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
              ++++     R    Q +     ++    + G  +S+ L  ++  +R+   ++ + +A
Sbjct: 146 RPTADALRAFALRNKRSQVLYRSMMIVIEALERGAPMSDVLMYVANDVREILRIQQERKA 205

Query: 122 LSMEAKASAWIIGSLPFCVSTLVY------FTSPGYMNVLINDPRGHMLLGVAA---AFM 172
            +        I       +   +        +SP    +   D    +L+          
Sbjct: 206 STGMQIMFFTITSGFVGPLILGIVTQVMSSMSSPELGIMFPMDSMTTILMAFVVVQAVLS 265

Query: 173 LIGIMVMR 180
            +G+ ++R
Sbjct: 266 GLGMGIIR 273


>gi|312110052|ref|YP_003988368.1| type II secretion system protein F [Geobacillus sp. Y4.1MC1]
 gi|311215153|gb|ADP73757.1| Type II secretion system F domain protein [Geobacillus sp. Y4.1MC1]
          Length = 403

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 58/173 (33%), Gaps = 6/173 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
            DF   L      ++AG+ + D+  ++  Q+    ++     V E+   G  LS + ++ 
Sbjct: 63  QDFVIFLRQFATLIKAGVSIVDSTRILASQTESKALKKALMEVEESLRAGNPLSAAAAKH 122

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R  P          +    + GGN+ E L  L+         + K+ +      A A I
Sbjct: 123 PRIFP-----TMFVNMVKAGEAGGNMDETLERLADHFEKMHRTRQKIVSALTYPIAVAII 177

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             ++   +   V  T          +        + A+ ++     +  +   
Sbjct: 178 AVAVVIFLLVSVVPTFVEMFADFHAELPAITKFVLRASEVMQTYWWLVAIALI 230


>gi|261823000|ref|YP_003261106.1| type IV pilin biogenesis protein [Pectobacterium wasabiae WPP163]
 gi|261607013|gb|ACX89499.1| Type II secretion system F domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 401

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 53/165 (32%), Gaps = 6/165 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
            +     +  +   ++AGLP+ +A+ ++  Q      R   R +      G SLSE++  
Sbjct: 58  REQLGELIKQLAALLQAGLPLLEALKLVSEQHERPGWRCILRDIRTHVAQGNSLSEALHD 117

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P+         +    +L G L      L++    +  ++ KV            
Sbjct: 118 YPHIFPV-----LYRSLIAVGELTGKLDVCCLQLAQQQEKQSRLQQKVIKALRYPCFVLV 172

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
           I   +   + TLV        +             +  A ++ G 
Sbjct: 173 IAMLVSMMMLTLVLPEFATLYSSFNTPLPWFTRQLLHLADIIAGY 217


>gi|222832288|gb|EEE70765.1| predicted protein [Populus trichocarpa]
          Length = 225

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 56/152 (36%), Gaps = 9/152 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V +GLP+  A+A +  ++           +    + G + + ++++  R     E 
Sbjct: 1   MAGLVGSGLPIERALAALSEEADDPRQHHLVAALRAEVNAGSTFARALAQHPR-----EF 55

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S     +    +  G+L   L  L+  L  R+ +++K+   ++       +       V 
Sbjct: 56  SDIYCAVIGAGEASGSLGPVLERLADDLESRQALQSKLIGAALYPA---IVTLVAIVIVL 112

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
            LV +  P   +V     R    L VA   + 
Sbjct: 113 FLVSYVVPQVASVFAGTKRALPWLTVAMLALS 144


>gi|85712757|ref|ZP_01043801.1| Type II secretory pathway [Idiomarina baltica OS145]
 gi|85693397|gb|EAQ31351.1| Type II secretory pathway [Idiomarina baltica OS145]
          Length = 417

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 52/165 (31%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
           D        +     AG+P+  A+  +   + +  +    R V      G +LS  +++ 
Sbjct: 75  DQLIIFCRQMYSLTNAGIPILRAIEGLADTTQNKRLERALRDVHSQLERGRTLSAGMAQH 134

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +       S     I    +  G L E+   L+  L   ++ + +++A +         
Sbjct: 135 PK-----VFSRLIVAIVHVGENTGQLEESFEQLALYLEKEQDTRKRIKAATRYPTFVMIA 189

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +    F ++  V  T     +    +        +  +   +   
Sbjct: 190 LVVALFVLNIFVIPTFANMFSRFNVELPWATRALLGTSEFFVAYW 234



 Score = 44.3 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/133 (10%), Positives = 40/133 (30%), Gaps = 7/133 (5%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74
                      + AG+P++ A++++     +  +  +   +  T   G +LS +  +   
Sbjct: 280 LSRFARSFAVMLSAGVPLTQALSLVSEAVDNAHMERKILDIRRTIERGENLSRAARQSKL 339

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           + P          + V  +  G     L  ++       +   K     +E     ++  
Sbjct: 340 FTP------LVLQMIVVGEETGRSDTLLKEVADYYERETDYDLKTLTARIEPVMIGFVAV 393

Query: 135 SLPFCVSTLVYFT 147
            +      +    
Sbjct: 394 LVLILALGIFTPM 406


>gi|170022929|ref|YP_001719434.1| type II secretion system protein [Yersinia pseudotuberculosis
           YPIII]
 gi|169749463|gb|ACA66981.1| type II secretion system protein [Yersinia pseudotuberculosis
           YPIII]
          Length = 277

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 4/157 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +K+ + KRT   L   P  +DI    V++G+ + +++     +           + +   
Sbjct: 117 IKNALTKRTNTLLKSLPFFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTK 176

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +     L  +I  +  Y P  E+  F + +      G  + E L +LS+ +R+ + +  +
Sbjct: 177 RAEINGLENAIKELQYYSPAIEMKMFCSTLQYSLSFGSTVYEQLTHLSQDMREMQLLMTE 236

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                +  K +  +   +      LV   SP  + +L
Sbjct: 237 ESISKLSTKLTLPLFLFILIPFVLLV--ISPSILELL 271


>gi|149374906|ref|ZP_01892679.1| general secretion pathway protein F [Marinobacter algicola DG893]
 gi|149360795|gb|EDM49246.1| general secretion pathway protein F [Marinobacter algicola DG893]
          Length = 403

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 11/178 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   +++G+P+  A++    QSS   +RS    +      G SL++S+  
Sbjct: 63  TADLALVTRQLATLIQSGIPIEQALSAAAQQSSKPRIRSMLIAIRAKVMEGYSLADSLGE 122

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             R  P               +  G+L   L  L+     R+  + K+Q  ++       
Sbjct: 123 FPRAFP-----RLYRSTVAAGEHAGHLDLVLNRLADYTEARQEARQKIQLAAIYPI---I 174

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIMVMRLMINFDV 187
           +       V  L+ +  P  + V +   +    L  A  A    +G   + L+I   V
Sbjct: 175 LSVVAIAIVVFLLTYVVPDIIEVFVKQGQELPALTAAMLAVSDFLGDYGIYLLILIVV 232



 Score = 37.8 bits (86), Expect = 0.78,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 40/126 (31%), Gaps = 7/126 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +     +G+P+ +A+ +     S+  +R E R        G SL  S+ +   + P+   
Sbjct: 276 LSILTTSGVPLVEAMRIAGEVLSNDHLRQELRDAARKVSEGGSLHRSLDQTGYFPPM--- 332

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L   L   + +  +    K        E      +   +   V 
Sbjct: 333 ---MLHMIASGEASGELDSMLERTATMQENTLQSKIAAIVGLFEPMMLLLMGVVVLIIVL 389

Query: 142 TLVYFT 147
            ++   
Sbjct: 390 AIMLPI 395


>gi|83648785|ref|YP_437220.1| type II secretory pathway subunit PulF [Hahella chejuensis KCTC
           2396]
 gi|83636828|gb|ABC32795.1| Type II secretory pathway, component PulF [Hahella chejuensis KCTC
           2396]
          Length = 409

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 54/172 (31%), Gaps = 6/172 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLS 66
           R    LD+       +    RAG+P+  A+  +   + S+ +      V      G++L+
Sbjct: 62  RKKVTLDELVILCRQMHALSRAGIPIIRAIRGLAESTRSETLAEVLDDVARRLEGGVNLA 121

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++    R       +     + +  +  G L E+   L   +   ++ + +V       
Sbjct: 122 TAMRAHPRT-----FNELFVSMILVGENTGQLEESFRQLGENIELERDTRKRVGQAVRYP 176

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                 I      V+  V     G       D      + VA +  +I    
Sbjct: 177 IMVVVAITIALLVVNFFVIPAFAGVFAKFGADLPLPTKILVATSNFMINYGW 228



 Score = 39.7 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 39/133 (29%), Gaps = 5/133 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                       + AGLPV+ A+ ++     +         I     G+   +++ R  R
Sbjct: 272 ALSRFSRNFSMMLAAGLPVTSALTLVAEAVDN---KYVGSAIADMRNGIERGDTLVRTAR 328

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
              +   S     +    +  G++   L  ++    +      K  A S+E      +  
Sbjct: 329 ATNM--FSPLVMQMLAVGEETGSVDSLLVEVANFYDEEIEYSLKRLAESIEPILLVVMGV 386

Query: 135 SLPFCVSTLVYFT 147
            +      +    
Sbjct: 387 MVLILALGVFLPM 399


>gi|85858125|ref|YP_460328.1| general secretion pathway protein F [Syntrophus aciditrophicus SB]
 gi|85721216|gb|ABC76159.1| general secretion pathway protein F [Syntrophus aciditrophicus SB]
          Length = 403

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 49/172 (28%), Gaps = 6/172 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLS 66
           +             I    + +GLP+   + ++   +++         + E    G SL+
Sbjct: 57  KQKVKEKQIVVFARIFSTMINSGLPLIQCLDLLAQQETNKTFAKAITAIKEDIEGGSSLT 116

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++ +                +    + GG L   L  LS  +     +K KV+      
Sbjct: 117 DALKKYPEI-----FDELFVNLIAAGESGGILDVILGRLSTYMEKAMKLKRKVKGALTYP 171

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            +   I   +   +   V          +           V A+  +    V
Sbjct: 172 ISVLVISIGVVTLLLLKVIPVFQKLFADMGGALPAPTQFLVNASAFMQNYFV 223


>gi|170025715|ref|YP_001722220.1| type IV pilin biogenesis protein [Yersinia pseudotuberculosis
           YPIII]
 gi|186894063|ref|YP_001871175.1| type IV pilin biogenesis protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|169752249|gb|ACA69767.1| type II secretion system protein [Yersinia pseudotuberculosis
           YPIII]
 gi|186697089|gb|ACC87718.1| type II secretion system protein [Yersinia pseudotuberculosis
           PB1/+]
          Length = 378

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 56/177 (31%), Gaps = 10/177 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72
           +        +   ++AGLP+ +++ ++  ++ D         + +    G SLSE + + 
Sbjct: 38  ERLVAMTRQLATLLQAGLPLVNSLQLLAKEADDSAWRCLLDEISQQVAQGQSLSEVMEQY 97

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +L GNL +    L      ++N+  KV            +
Sbjct: 98  P-----HVFPRLYPPVVAVGELTGNLEQCCTQLVHHQERQQNLHKKVIKALKYPVVVCIV 152

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHM--LLGVAAAFMLIG--IMVMRLMINF 185
              +   +  +V                G    LL ++      G  + ++  ++  
Sbjct: 153 ALVVSVIMLVMVLPEFAQIYQSFDTPLPGLTASLLWLSTFLTFYGPYLALIIAIVCI 209



 Score = 42.4 bits (98), Expect = 0.030,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 37/133 (27%), Gaps = 5/133 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                  +  + +AGLP+S  +        +    +  R I+ Q     +S+ I      
Sbjct: 244 LSQIFQTLAITQQAGLPLSAGLDAAARSIHNYNYQQALRCIQKQ-----ISQGIPLYTTL 298

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                       +    +  G+L   L  L+   + +    A      +E      I   
Sbjct: 299 NQHPLFPAICQQLIRVGEESGSLDVLLEKLACWHQQQTQNLADNVTQMLEPLLMLIIGSI 358

Query: 136 LPFCVSTLVYFTS 148
           +   V  +     
Sbjct: 359 VGVLVIAMYLPIF 371


>gi|291523558|emb|CBK81851.1| Type II secretory pathway, component PulF [Coprococcus catus GD/7]
          Length = 404

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 59/157 (37%), Gaps = 9/157 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
            D        V    AG+P+ +A+ ++  Q+ +  ++     V+     G +L++S+   
Sbjct: 63  RDLSVFCRQFVSITEAGVPMKEALQMLAEQTENKWLKRAIAEVLTNVEKGNTLADSMMAF 122

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P          +    +  G+L  + + ++        ++A +   ++       +
Sbjct: 123 PDIFPG-----MLVNMVRAGEASGSLELSFSRMATHFEKEAKLRATIMKATIYPI---IL 174

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
           I +    V+ ++ F  P ++++  +       L +A 
Sbjct: 175 ICAAIGVVAVMLLFVIPIFVDMFADLDVQMPALTLAV 211



 Score = 42.8 bits (99), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 7/136 (5%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRY 75
                 +   + AGL  +  + ++ G   +    + F +  E    G+ LSE +     +
Sbjct: 269 AQFARTMSTLLSAGLSTTSCLDIVAGIMKNVHYANAFLKAKEEVMKGIPLSEPLQTAGIF 328

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P+         ++   +  GNL E L  L+    +   M  +    +ME     ++   
Sbjct: 329 PPM------VYHMTGIGEETGNLEEMLEKLADYYDEEVEMTTQSILAAMEPLIIVFMALI 382

Query: 136 LPFCVSTLVYFTSPGY 151
           +   V  ++      Y
Sbjct: 383 VGTLVIAVILPIGAMY 398


>gi|262275464|ref|ZP_06053274.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Grimontia hollisae CIP 101886]
 gi|262220709|gb|EEY72024.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Grimontia hollisae CIP 101886]
          Length = 288

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 70/157 (44%), Gaps = 4/157 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV--IET 58
           ++   +    K     P  LDI+   V+ G+ +  ++  +  + +   +     +  +  
Sbjct: 133 LEMRRRALARKITRQLPYLLDIMGVCVQTGMTIESSIFYLTTEMAAFDKDIAYVLKRLRD 192

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +     L +++  +  ++P  E+  F   ++   Q G ++ EAL+ L++ +R+ + +  +
Sbjct: 193 RAQTKGLEKALLELNEHVPAPEMHSFVMTLTQSMQHGTSIYEALSILAKDIREIQLLSLE 252

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            +A  + +K S  +I  +   +  L+    PG M +L
Sbjct: 253 EKAGKLSSKMSVPLILFIMMPIVILITA--PGIMRML 287


>gi|257790324|ref|YP_003180930.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|325830281|ref|ZP_08163738.1| type II secretion system protein F domain protein [Eggerthella sp.
           HGA1]
 gi|257474221|gb|ACV54541.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|325487748|gb|EGC90186.1| type II secretion system protein F domain protein [Eggerthella sp.
           HGA1]
          Length = 313

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 59/152 (38%), Gaps = 1/152 (0%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESI 69
                 P+A++++  ++ AG P+      +      P+  EF  V    +L   S  E++
Sbjct: 162 AIELALPDAMELLGIAIAAGSPIEQCFREVAESMDGPLAREFSLVDREVNLLGRSREEAL 221

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
             + +    Q+VS F+  +      G +L+E LA  + + R+    +A  +   M  K  
Sbjct: 222 EHLGQRCRSQDVSAFTAQLMQAVSQGSSLTEGLAVQAALARETAQAEAMERIRKMPTKLD 281

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
             +          LV   +   +   +ND  G
Sbjct: 282 IVLSLCFLPPTVALVVVPTVVNLLNFLNDSMG 313


>gi|262370086|ref|ZP_06063413.1| type 4 fimbrial assembly protein [Acinetobacter johnsonii SH046]
 gi|262315125|gb|EEY96165.1| type 4 fimbrial assembly protein [Acinetobacter johnsonii SH046]
          Length = 408

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 15/161 (9%), Positives = 44/161 (27%), Gaps = 6/161 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLS 66
           +      D       +   ++AG+P+     ++     +P   E    +      G + +
Sbjct: 63  KKKVTTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFA 122

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++ +  +             +    +  G L   L  ++      + +K K++      
Sbjct: 123 GALKKYPQ-----YFDNLFCSLVESGEQSGALETMLDRVAVYKEKSELLKQKIKKAMKYP 177

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
                +   +   +   V        +    D      + V
Sbjct: 178 ATVVVVAVIVTIILMVKVVPVFQELFSSFGADLPAFTQMVV 218



 Score = 35.1 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 41/129 (31%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +  +  AG+P+ DA+    G +++ V  E   ++ E    G  L  ++    +     
Sbjct: 280 RTLSTTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVATGQQLQFAMRATNK----- 334

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +  +    +  G L   L  ++    +  +         ME    A +   +   
Sbjct: 335 -FPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGVLVGGL 393

Query: 140 VSTLVYFTS 148
           V  +     
Sbjct: 394 VIAMYLPIF 402


>gi|253701804|ref|YP_003022993.1| type II secretion system protein [Geobacter sp. M21]
 gi|251776654|gb|ACT19235.1| type II secretion system protein [Geobacter sp. M21]
          Length = 302

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 62/148 (41%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   +K R  +     P+ LD++   V AGL +  A+           +P+  E R+V  
Sbjct: 143 LHLKVKARQLEIFHTLPDILDLVTLCVEAGLSMDAALIRTTETPQFRDNPLAIEIRQVTM 202

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G    ES+  M     ++++  F+T+++   + G +LS AL   S  LR ++   A
Sbjct: 203 EVRAGKPRVESLKDMALRTRVEDIGSFTTMVTQAERFGTSLSHALRTFSDELRTKRRQTA 262

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           +  A     K    +I  +   +  ++ 
Sbjct: 263 EEAAAKTTIKLIFPLIMFIFPALLVVIL 290


>gi|167581954|ref|ZP_02374828.1| Bacterial type II secretion system protein F domain [Burkholderia
           thailandensis TXDOH]
          Length = 271

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 62/146 (42%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   + +R        P+ALD++V    AG  ++ A+  +  +      P+  EF    +
Sbjct: 111 LGFAVARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELGTICPPLADEFSVCAD 170

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G   + +++ M   + L  +    T +    Q G  ++++L  LSR  R  + +  
Sbjct: 171 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 230

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K +  ++  +   V+ +
Sbjct: 231 EEKAAKLAPKMTLPMMLFVMPTVALI 256


>gi|304311188|ref|YP_003810786.1| type II secretion system protein [gamma proteobacterium HdN1]
 gi|301796921|emb|CBL45134.1| type II secretion system protein [gamma proteobacterium HdN1]
          Length = 319

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 64/148 (43%), Gaps = 1/148 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +   I +R    L +FP  LD++V  +RAGL  + A+   +       +R EF +V+   
Sbjct: 152 LSDQINRRRRITLKEFPFMLDLLVLGMRAGLNYAAALGHAIEAMPNGVIRDEFSKVLREI 211

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G S  E++  +   M L+ +S F   ++   + GG +   L   +   R+ +   A++
Sbjct: 212 RAGKSRREALLTLADRMNLEAISNFVAAVNQVEETGGEIVSVLMVQAEQRRNERFTAAEI 271

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFT 147
            A     +    ++  L   +  L+ F 
Sbjct: 272 AANKAPIRMLIPMMLFLFPIIFMLLTFI 299


>gi|119025148|ref|YP_908993.1| hypothetical protein BAD_0130 [Bifidobacterium adolescentis ATCC
           15703]
 gi|118764732|dbj|BAF38911.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
          Length = 256

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 5/159 (3%)

Query: 26  SVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           SVR+G  +  A   +  Q +     E  R      +    S    +       Q  +   
Sbjct: 98  SVRSGATLVQAFEEL--QGAPFAVPELTRFRIDMAV---RSRCSLQEQHKHVDQLGAELH 152

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
              ++  QLG  +S  L  ++  L+ R+ +           +A+  ++ +LP     L  
Sbjct: 153 AACTLSLQLGCEMSRCLEAVAASLKRRRLLDDLRANAFAMPQATVKLLMALPLLTVMLGE 212

Query: 146 FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                 +  L+ D +G M LG A     +G   +R ++ 
Sbjct: 213 CMGAHPLRFLVEDVKGWMCLGFAGCCYAVGWYWIRRLMR 251


>gi|91777214|ref|YP_552422.1| putative type II secretion system protein F [Burkholderia
           xenovorans LB400]
 gi|91689874|gb|ABE33072.1| Putative type II secretion system protein F [Burkholderia
           xenovorans LB400]
          Length = 293

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 69/146 (47%), Gaps = 1/146 (0%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + + ++R A+ L   P  LD +  +V AGL ++ A+   V +    P+R E   V+    
Sbjct: 136 RDVRRRRVAQILRHLPIYLDFLTLAVEAGLNINGAIQKAVEKGPEGPLRRELEHVLRDLK 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            GL+ +E++ R+   + ++EV+     +    ++G  L+++L   S   R  +  +A+ Q
Sbjct: 196 SGLNRTEALRRLDDRLRIKEVTNLVGTVVQAERMGSGLAKSLRFQSEQRRSERFQRAEKQ 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146
           A+    K    ++  +      ++ F
Sbjct: 256 AMEAPVKLVFPLLFFIFPITFIVLGF 281


>gi|319779646|ref|YP_004130559.1| Type II/IV secretion system protein TadC [Taylorella equigenitalis
           MCE9]
 gi|317109670|gb|ADU92416.1| Type II/IV secretion system protein TadC [Taylorella equigenitalis
           MCE9]
          Length = 267

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 3/156 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +K  I KR  +  + FP  LD++  S+ +G   + ++           ++ E    I   
Sbjct: 111 IKRYISKRRTELSEIFPFFLDVLSVSLSSGQNFTMSLQYAFNSLPNGVLKDELGFTIREM 170

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G    E+I  M +   L  V  +   I    QLG  L+ A    +  +R ++ + A+ 
Sbjct: 171 QAGKPKLEAIDDMAQRSDLNVVKQWVNNIKQADQLGLQLASAFRAQASYIRKQRYLMAEK 230

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            A     K    ++  +  C   ++ F  P +M +L
Sbjct: 231 LAFEAPVKMLFPLVFFIFPCTFIVLLF--PVFMQIL 264


>gi|318060836|ref|ZP_07979559.1| type II secretion system F protein [Streptomyces sp. SA3_actG]
          Length = 305

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 62/166 (37%), Gaps = 1/166 (0%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
              ++   VRAG   ++A+A  V  +   +      ++     G  +  ++ +  R    
Sbjct: 131 LCGLLAGEVRAGSGPAEALAHAVN-ACGELGPARADILAAARFGGDVPAALRQAARVPGA 189

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           + +   +    V    G  L+  L  L R L   ++ +A + A    A+A+A ++ +LP 
Sbjct: 190 EGLVGLAACWRVALDRGAGLAVGLERLERALLADRDQRADLLAQLSGARATAGLLAALPL 249

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
               L        + VL     G + L + +     G+     ++ 
Sbjct: 250 LGLLLGSAVGAAPLRVLFGSAPGFVCLVIGSGLEAAGVWWCLWLVR 295


>gi|251780157|ref|ZP_04823077.1| bacterial type II secretion system protein F [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243084472|gb|EES50362.1| bacterial type II secretion system protein F [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 400

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/179 (11%), Positives = 55/179 (30%), Gaps = 12/179 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            D           + AG+P+   + ++  Q+++    E  + +E       +        
Sbjct: 62  KDLSIFCRQFYTMLDAGVPILTCLNILTSQTTNKKLQETLKEVEDDVEKGGV----LSDA 117

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
               ++        +    +  GNL   +  ++        +  KV+   +       + 
Sbjct: 118 MRKHIEVFPGLLVSLVAAGEASGNLDSIMLRMANHYEKENKVSNKVRNAMIYPI---ILG 174

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHM-----LLGVAAAFMLIGIMVMRLMINFDV 187
                 V  ++ +  P + ++ I            LL  +A+      M++  ++   V
Sbjct: 175 LVAITAVVFILTYVMPTFTDLFIESGLSLPWSTRFLLWSSASLKAHWFMILLAIVGITV 233



 Score = 36.6 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 48/146 (32%), Gaps = 8/146 (5%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSL 65
           +R  + +         +   + +GLP+  A+ +++G   + +      +V E    G SL
Sbjct: 259 RRLNEMII-VSRFTRTLSTLLSSGLPLVQALDIVIGVIDNKIAEDAILKVKEKVVRGESL 317

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           + S+                  +    +  G+L + L   +    +      +     ME
Sbjct: 318 NSSLRETG------IFPQMLYSMIKIGEETGSLDDILNKTADFYDEELEATIQTTVALME 371

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGY 151
                 +   + F + +++      Y
Sbjct: 372 PALIVIMGLIIGFIIISIMIPMFDSY 397


>gi|330958320|gb|EGH58580.1| general secretion pathway protein F [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 403

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 63/168 (37%), Gaps = 6/168 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
             D  +    +   + AGLP+ +A++  V Q+    +      V      G+ L+E+++ 
Sbjct: 63  DSDLASVTRQMASLLGAGLPLDEALSATVEQAERKHIIQTLGEVRTDVRSGMRLAEALAA 122

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             R     +       +    +  G+L++ +  L+  + +R  ++ K+    +       
Sbjct: 123 RPR-----DFPDIYRALIAAGEESGDLAQVMERLADYIEERNMLRGKILTAFIYPCVVGL 177

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +  ++   + + V        +    D  G  L  +AA+  +    +M
Sbjct: 178 VSIAIVIFLLSYVVPQVVSAFSQARQDLPGLTLAMLAASDFIRTWGLM 225



 Score = 34.7 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 36/129 (27%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+  A+       S+   S+       +        +  R+ +  P 
Sbjct: 272 FASTLAILGSAGVPLLRALEAARQTLSNDRLSQSVSAATAKVREGVNLAAALRVEKVFPP 331

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G L   L   ++ L      +A      +E      + G +  
Sbjct: 332 -----LLIHLIASGEKTGALPPMLERAAQTLSRDIERRAMGMTALLEPLMIVIMGGVVLV 386

Query: 139 CVSTLVYFT 147
            V  ++   
Sbjct: 387 IVMAVLLPI 395


>gi|331005864|ref|ZP_08329216.1| General secretion pathway protein F [gamma proteobacterium
           IMCC1989]
 gi|330420308|gb|EGG94622.1| General secretion pathway protein F [gamma proteobacterium
           IMCC1989]
          Length = 420

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 56/184 (30%), Gaps = 22/184 (11%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   V++G+P+S+++  +  QS  D +++   +V      GLSL++++S  
Sbjct: 82  KDLSLFTRQLASLVQSGMPLSESLQAVAKQSRKDAIKNVVLQVRSRVLEGLSLAQALSDY 141

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R             +    +  G L   L  LS         + ++++  +       +
Sbjct: 142 PRI-----FDSMYRAMVNAGEQSGFLGPVLERLSDYAETSHAARQQLKSAMVYPIILVLV 196

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR----------------GHMLLGVAAAFMLIGI 176
             S+   +   V             +                  G   L       +   
Sbjct: 197 CISIVIALMVFVVPKITVVFTRAKQELPWPTELLINISDFLQNYGLYCLAALILLGVGVN 256

Query: 177 MVMR 180
             +R
Sbjct: 257 FWLR 260


>gi|271962054|ref|YP_003336250.1| Flp pilus assembly protein TadB-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270505229|gb|ACZ83507.1| Flp pilus assembly protein TadB-like protein [Streptosporangium
           roseum DSM 43021]
          Length = 234

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 60/182 (32%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +    KRTA +          +   + AG    +A+A  V     P     R +I     
Sbjct: 47  RSRPSKRTAAWRIASIELCQGLAAELAAGRTAGEALARAVSTVEFPDPVALRPLIAAARD 106

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  +  ++         +  S  +    V    G  LS  +  ++  LR+ +  +  V A
Sbjct: 107 GGDVPAALLAAAPEQGGEAFSRLAACWKVSVTAGAGLSVLVDRVAGSLREAQAHRQDVAA 166

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
                +A+A ++  LP     +        ++ L   P G   L +       G+     
Sbjct: 167 QLAGPRATARLLAGLPALGLLMAMGLGMRPLHFLFGSPAGVGCLALGLVLDGCGLWWTHR 226

Query: 182 MI 183
           ++
Sbjct: 227 LV 228


>gi|197117442|ref|YP_002137869.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem]
 gi|197086802|gb|ACH38073.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem]
          Length = 302

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 62/148 (41%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   +K R  +     P+ LD++   V AGL +  A+           +P+  E R+V  
Sbjct: 143 LHLKVKARQLEIFHPLPDILDLVTLCVEAGLSIDAALIRTTETPQFRDNPLAIEIRQVTM 202

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G    ES+  M     ++++  F+T+++   + G +LS AL   S  LR ++   A
Sbjct: 203 EVRAGKPRVESLKDMAVRTRVEDIGSFTTMVAQAERFGTSLSHALRTFSDELRTKRRQMA 262

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           +  A     K    +I  +   +  ++ 
Sbjct: 263 EEAAAKTTIKLIFPLIMFIFPALLVVIL 290


>gi|311896986|dbj|BAJ29394.1| hypothetical protein KSE_35900 [Kitasatospora setae KM-6054]
          Length = 360

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 63/171 (36%), Gaps = 4/171 (2%)

Query: 18  NALDIIVRSVRAGLPVSDA----VAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +    +   +R G     A    +A    +    + +E    +     G  L  ++  + 
Sbjct: 145 DLCTGLAAELRGGATPEQAMHTVLARAAPEWGRRLGAEPAARLAAGRYGADLPAALRLVA 204

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +  +  +    V ++ G  L++ L  ++  LR  + +  ++       + +  ++
Sbjct: 205 ELPGGEGAAAMAACWRVSTESGSGLADGLEQVAEALRAERALSEEIAGELAGPRTTVAVL 264

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
             LP     L        ++VL++ P G + L V A   ++GI+    ++ 
Sbjct: 265 AVLPAVGLGLGAALGAHPVHVLLHTPAGLLGLLVGAVLEVVGIVWTARIVR 315


>gi|301166566|emb|CBW26142.1| general secretion pathway protein F [Bacteriovorax marinus SJ]
          Length = 404

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/166 (10%), Positives = 51/166 (30%), Gaps = 6/166 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72
            +       +   ++A + + +A   +V Q+ +         + +  + G SL+ ++S  
Sbjct: 66  QELSLMTRQLATLIKAKIQIVEAFNALVDQTDNQKFKSILAEIKQKINEGSSLANALSDY 125

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +             +    +  G L   L  L+     +  +K K++         A++
Sbjct: 126 PK-----VFDNVYVNMVDAGETSGTLQVVLLRLADFTEAQVKLKNKIKGAMTYPMIMAFV 180

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
              +   +   V        + +  +      + +  +  L     
Sbjct: 181 GAGMMGIIFIFVIPKITRIFDTMKKELPLQTEICIWISAFLKSYWW 226


>gi|307824334|ref|ZP_07654560.1| Type II secretion system F domain protein [Methylobacter
           tundripaludum SV96]
 gi|307734714|gb|EFO05565.1| Type II secretion system F domain protein [Methylobacter
           tundripaludum SV96]
          Length = 406

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/154 (11%), Positives = 45/154 (29%), Gaps = 6/154 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMV 73
           D       +   ++AG+P+  +  ++     +         +      G +L+E++++  
Sbjct: 67  DIAIFARQLATMLKAGVPLVQSFDIVGKGHDNASMEILLLGIKADIEAGDTLAEALNKRP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G L   L  ++      ++MK K++       A   + 
Sbjct: 127 L-----YFDELFCNLVAAGEQAGVLETLLDKIATYKEKTESMKKKIKKALTYPIAVIVVA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
             +   +   V             D      + V
Sbjct: 182 FVVTTILLIFVVPVFADMFKSFGADLPAFTKMVV 215



 Score = 43.6 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/130 (9%), Positives = 37/130 (28%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+ +A+  + G   + + +E    +  +       +   +     P 
Sbjct: 275 FARTLATMSAAGVPLVEALESVAGACGNIIYTEAVLKMREEVATGQRLQFAMQQAGLWPH 334

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G++   L  ++    +  +      +  ME      +   +  
Sbjct: 335 -----MVVQMVAIGEESGSMDSMLLKVADFFDEEVDNLVDNLSSLMEPIIMVILGTLVGG 389

Query: 139 CVSTLVYFTS 148
            V  +     
Sbjct: 390 LVVAMYLPIF 399


>gi|254786983|ref|YP_003074412.1| pilin biogenesis protein [Teredinibacter turnerae T7901]
 gi|237686170|gb|ACR13434.1| pilin biogenesis protein [Teredinibacter turnerae T7901]
          Length = 404

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/166 (10%), Positives = 51/166 (30%), Gaps = 6/166 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   ++AG+P+  +  ++ G + +  +      + E    G   + S+ +  
Sbjct: 66  DIALFTRQMATMMKAGVPLVQSFDIVAGGADNKTLAELILDIKEDVAAGGGFAASLRKRP 125

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           +             +    +  G L   L  ++      + +KAK++       A   + 
Sbjct: 126 K-----YFDDLFCNLVESGEQSGALETMLDRIATYKEKTEQLKAKIKKAMTYPIAVVVVA 180

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             +   +   V        +    +     L  +  + +     ++
Sbjct: 181 VVVTGVLLVKVVPQFAETFSSFGANLPAFTLFVLHLSNLAQDYWLV 226



 Score = 38.9 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 44/131 (33%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +  +  AG+P+ DA++ + G + + +      R+ E    G  L+ +I+       
Sbjct: 274 FARTLSTTFAAGVPLIDALSSVAGATGNSIYESAVLRIREEVSTGTQLNVAINS------ 327

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +        ++   +  G L E L  ++    +  +         +E    A +   + 
Sbjct: 328 TKVFPPMLVQMTTIGEESGALDEMLDKVASYYEEAVDNLVDSLTSLLEPMIMAVLGVLVG 387

Query: 138 FCVSTLVYFTS 148
             +  +     
Sbjct: 388 GLMVAMYLPIF 398


>gi|311695301|gb|ADP98174.1| type IV pilus biogenesis protein PilC [marine bacterium HP15]
          Length = 406

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/166 (10%), Positives = 51/166 (30%), Gaps = 6/166 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   ++AG+P+  +  ++     +  ++     +      G S + ++ +  
Sbjct: 67  DIAMLTRQLATMMKAGVPLVQSFDIVADGLENKGLQELILAIRNDIASGTSFAGALRKHP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R+      +     +    +  G L + L  ++  L   + +K KV+       A   + 
Sbjct: 127 RH-----FNDLYCSLVDSGEKAGALEQMLDRIATYLEKSELLKKKVKKAMTYPAAVVVVA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             +   +   V             D      + V  +  +     +
Sbjct: 182 IIVTAILLVKVVPQFEALFTGFGADLPVFTQMVVNLSEWMQKWWFI 227



 Score = 37.4 bits (85), Expect = 0.99,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 46/128 (35%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
            ++  +  AG+P+ DA+  +   + + V  +    I+ +    +  ++  R     P+  
Sbjct: 277 RVLSTTFAAGVPLVDALESVANATGNAVYRDGINKIKDEVASGTQLQAAMRNADIFPV-- 334

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
               +  ++   +  GNL E L+ ++       +      +  ME    + +   +   +
Sbjct: 335 ---MAVQLTAIGEESGNLDEMLSKVADHYEAVVDDLVDNLSSLMEPLIMSVLGVLVGGLI 391

Query: 141 STLVYFTS 148
             +     
Sbjct: 392 IAMYLPIF 399


>gi|109899648|ref|YP_662903.1| type II secretion system protein [Pseudoalteromonas atlantica T6c]
 gi|109701929|gb|ABG41849.1| type II secretion system protein [Pseudoalteromonas atlantica T6c]
          Length = 401

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/166 (10%), Positives = 49/166 (29%), Gaps = 8/166 (4%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             I   + AG+ +   + +I G  ++  +R     +      G   S ++ +        
Sbjct: 69  RQIATMLSAGVTLIQTIDMIAGGHNNPNMRKMLGEIGGEVKAGNPFSSALRKHPEQFDDL 128

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                   +    +  G L      ++      + +K+K++       A   +   +   
Sbjct: 129 YCD-----LVSTGEQSGALETIYDRIATYKEKAEALKSKIKKAMFYPVAVIVVAFIVTTI 183

Query: 140 VSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183
           +   V        +    +       +L ++      G+ V   ++
Sbjct: 184 LLIFVVPQFEEIFSSFGAELPAFTQFVLAISRFLQDYGLFVGAGLV 229



 Score = 34.7 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/131 (10%), Positives = 38/131 (29%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +  +  AG+P+  A+    G   +   R     V +    G  ++ ++        
Sbjct: 271 FSRTLATTFAAGVPLIGALDSAAGASGNAVFRDAILFVKKEVAGGTQMNTAMRATA---- 326

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                   T +    +  G + + L+ ++ I     +         +E    A +   + 
Sbjct: 327 --VFPDMVTQMVAIGEEAGAVDDMLSKIATIYEAEVDDMVDGLTSLLEPMIMAVLGVVIG 384

Query: 138 FCVSTLVYFTS 148
             +  +     
Sbjct: 385 GLIVAMYLPIF 395


>gi|71278502|ref|YP_271220.1| MSHA biogenesis protein MshG [Colwellia psychrerythraea 34H]
 gi|71144242|gb|AAZ24715.1| MSHA biogenesis protein MshG [Colwellia psychrerythraea 34H]
          Length = 408

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 64/180 (35%), Gaps = 14/180 (7%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
           ++       +   +R+G+P+  A+  +V  ++   ++     + +    G + S +++  
Sbjct: 68  EELIVFCRQMYALMRSGVPILRAINGMVESANSISLKKALTDIGKQLEGGYTFSSALNGH 127

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +             +    +  G L +A   L+  L    + + +++A           
Sbjct: 128 PKIFDH-----LFVSLVHVGENTGQLDQAFLKLTTYLERELDTRKRIKAALRYPSMVLIA 182

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF--------MLIGIMVMRLMIN 184
           I +    ++  V  T       L  +        +A++         ML+GI V+ +MI 
Sbjct: 183 IAAAMVILNIFVIPTFANMFTRLGAELPFATRFIIASSNLFINYWHYMLLGIFVVLIMIR 242


>gi|83720640|ref|YP_442975.1| type II secretion system protein F [Burkholderia thailandensis
           E264]
 gi|83654465|gb|ABC38528.1| Bacterial type II secretion system protein F domain [Burkholderia
           thailandensis E264]
          Length = 290

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 62/146 (42%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   + +R        P+ALD++V    AG  ++ A+  +  +      P+  EF    +
Sbjct: 130 LGFAVARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELGTICPPLADEFSVCAD 189

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G   + +++ M   + L  +    T +    Q G  ++++L  LSR  R  + +  
Sbjct: 190 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 249

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K +  ++  +   V+ +
Sbjct: 250 EEKAAKLAPKMTLPMMLFVMPTVALI 275


>gi|262377012|ref|ZP_06070238.1| general secretion pathway protein F [Acinetobacter lwoffii SH145]
 gi|262308050|gb|EEY89187.1| general secretion pathway protein F [Acinetobacter lwoffii SH145]
          Length = 409

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/184 (10%), Positives = 57/184 (30%), Gaps = 8/184 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQ 59
           ++ L+KK+ +    D       +   ++AG+P+     ++     +P   E    +    
Sbjct: 59  LEGLMKKKVSTL--DITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEV 116

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G + + ++ +  +             +    +  G L   L  ++      + +K K+
Sbjct: 117 EGGNTFAGALRKYPQ-----YFDNLFCSLVESGEQSGALETMLDRVAIYKEKSELLKQKI 171

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +       A   +   +   +   V        +    D      + V  +  +     +
Sbjct: 172 KKAMKYPAAVVVVALIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFL 231

Query: 180 RLMI 183
            ++ 
Sbjct: 232 LIIA 235


>gi|237807312|ref|YP_002891752.1| type II secretion system protein [Tolumonas auensis DSM 9187]
 gi|237499573|gb|ACQ92166.1| type II secretion system protein [Tolumonas auensis DSM 9187]
          Length = 418

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 15/164 (9%), Positives = 44/164 (26%), Gaps = 6/164 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMV 73
           D       I   + AG+P+   + ++          E    +      G   S+++ +  
Sbjct: 79  DIAVLTRQIATMLTAGVPLVQTLRLLASSHEKRPMREMLSTICADIETGTPPSKALRQFP 138

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G L      ++      + +K+K++          ++ 
Sbjct: 139 R-----YFDDLYCDLVASGEQSGALDAIFDRIAIYREKAEALKSKIKKAMFYPATVIFVA 193

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
             +   +   V             +      + +  + +L    
Sbjct: 194 LVVSAILLIFVIPEFDKIFKSFGAELPAFTRMVITLSNILQSYW 237


>gi|254244661|ref|ZP_04937983.1| pilin biogenesis protein [Pseudomonas aeruginosa 2192]
 gi|126198039|gb|EAZ62102.1| pilin biogenesis protein [Pseudomonas aeruginosa 2192]
          Length = 405

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/170 (11%), Positives = 53/170 (31%), Gaps = 6/170 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   + AG+P+  +  +I        +R     + +    G SL+ S+ +  
Sbjct: 67  DIALFTRQMSTMMAAGVPLLQSFDIISEGFDNPNMRKLVEEIKQEVAGGNSLANSLRKKP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           +             +    +  G L   L  ++      + +KAK++       A   + 
Sbjct: 127 Q-----YFDSLYCNLVDAGEQSGALETLLDRVATYKEKTEALKAKIKKAMTYPIAVIVVA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             +   +   V             +      + +  + +L    ++ L++
Sbjct: 182 IIVSAILLIKVVPQFQSVFEGFGAELPAFTQMVINISNVLQEWWLLVLLM 231



 Score = 37.0 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 43/129 (33%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +  +  AG+P+ +A+  + G + + V      ++ +    G+ L+ S+          
Sbjct: 277 RTLSTTFAAGVPLVEALDSVSGATGNVVFRDAVGKIKQDVSTGMQLNFSMRT------TN 330

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +  ++   +  G L + LA ++       +         ME    A +   +   
Sbjct: 331 IFPSMAIQMTAIGEESGALDDMLAKVAGFYEQEVDNAVDNLTALMEPMIMAVLGVLVGGL 390

Query: 140 VSTLVYFTS 148
           +  +     
Sbjct: 391 IIAMYLPIF 399


>gi|148253057|ref|YP_001237642.1| hypothetical protein BBta_1517 [Bradyrhizobium sp. BTAi1]
 gi|146405230|gb|ABQ33736.1| putative membrane protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 320

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 68/147 (46%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           + H+++++T       P+AL+++V  V AGL + + +  +     ++   +  E      
Sbjct: 157 IDHVVRQQTKAVASGLPDALELLVVCVEAGLSLEEGLHRVAHELREAQPALADELVLTWA 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
             ++  S +++++       +  V    +++S   QLG  L+++L   +  +R+ + M  
Sbjct: 217 EINVLPSRAQALTNFAARNDIPSVRSVVSMLSQSLQLGTPLAQSLRVGAVEMRNDQMMLL 276

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +A  + A  +  ++  +   V  LV
Sbjct: 277 EERASRLPAMLTIPVMLFIMPTVFLLV 303


>gi|303239931|ref|ZP_07326454.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
 gi|302592641|gb|EFL62366.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
          Length = 404

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 6/167 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
            D             AG+ +  ++ ++  Q+ +  + +   +V E    G+SLSE+    
Sbjct: 63  KDLSVFCKQFYTMADAGVTIIGSLDLLRRQTENRKLANILSKVYEDVQKGMSLSEA---- 118

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +   E       +    ++ GNL   L  L+  L     +K K++   +  KA   I
Sbjct: 119 -MKVHKSEFPTIVISMIEIGEISGNLDTVLDRLATYLEKDNKVKQKIKTSMVYPKAIGGI 177

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
                  +   V          + ++      + +A +     I  +
Sbjct: 178 AIVAVIFMMIFVVPNFITMFKGMGSELPLPTRILLAISDTFKNIWFL 224



 Score = 37.8 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 41/134 (30%), Gaps = 7/134 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   ++ G+P+  A+ V+     + V      +V E    G  L+E +  +     
Sbjct: 273 FSRSLSLMLKTGVPLIQALEVVGNLLDNEVVNKGMIKVKEDIKRGSGLAEPLEAVG---- 328

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                   T +    +  G+L   +  ++    D  +         +E      +   + 
Sbjct: 329 --IFPVMVTHMISIGEEAGSLDSIVEKVADFYDDELDASIGKILAMLEPLMIVAMAVVIG 386

Query: 138 FCVSTLVYFTSPGY 151
             V  ++      Y
Sbjct: 387 GIVIAMILPIFSMY 400


>gi|53803861|ref|YP_114525.1| type IV pilin biogenesis protein PilC [Methylococcus capsulatus
           str. Bath]
 gi|53757622|gb|AAU91913.1| type IV pilin biogenesis protein PilC [Methylococcus capsulatus
           str. Bath]
          Length = 404

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/161 (10%), Positives = 48/161 (29%), Gaps = 6/161 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLS 66
           R              +   + AG+P+  A  ++     +  ++     +      G +L+
Sbjct: 59  RQKITPKHIAVFSRQLATMLSAGVPLVQAFDIVGRGHDNPAMQDLLMSIKADVEAGTTLA 118

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++S+   +            +    +  G L   L  ++      +++K K++      
Sbjct: 119 DALSKHPVH-----FDELFCNLVRAGEQAGVLETLLHKVADYKEKTESLKGKIKKALAYP 173

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
            A   +   +   +   V  T          D      + +
Sbjct: 174 IAVVVVAVIVTSILLIFVVPTFEDLFKSFGADLPAFTQMVI 214



 Score = 44.3 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+ +A+  + G + + +  E    +          +   R     P 
Sbjct: 274 FARTLSTMSAAGVPLVEALQSVAGATGNIIYGEAVMRMREDVSTGQQLQMSMRQANLFPN 333

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G L   L+ ++    +  +      +  +E      +   +  
Sbjct: 334 -----MVMQMVAIGEESGALDSMLSKVADFYEEEVDNAVDSLSSLLEPLIMVVLGVLIGG 388

Query: 139 CVSTLVYFTS 148
            V  +     
Sbjct: 389 LVIAMYLPIF 398


>gi|307726638|ref|YP_003909851.1| type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1003]
 gi|307587163|gb|ADN60560.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1003]
          Length = 293

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 69/146 (47%), Gaps = 1/146 (0%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + + ++R A+ L      LD +  +V AGL ++ A+   V +    P+R E   V+    
Sbjct: 136 RDVRRRRVAQILKHLSIYLDFLTLAVEAGLNINGAIQKAVEKGPAGPLRWELEHVLRDLK 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            GL+ +E++ R+   + ++EV+ F   +    ++G  L+++L   S   R  +  +A+ +
Sbjct: 196 SGLNRTEALRRLDDRLRIKEVTNFVGAVVQAERMGAGLAKSLRFQSEQRRSERFQRAEKK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146
           A+    K    ++  +      ++ F
Sbjct: 256 AMEAPVKLVFPLLVFIFPITFIVLGF 281


>gi|125973620|ref|YP_001037530.1| type II secretion system protein [Clostridium thermocellum ATCC
           27405]
 gi|281417825|ref|ZP_06248845.1| Type II secretion system F domain protein [Clostridium thermocellum
           JW20]
 gi|125713845|gb|ABN52337.1| type II secretion system protein [Clostridium thermocellum ATCC
           27405]
 gi|281409227|gb|EFB39485.1| Type II secretion system F domain protein [Clostridium thermocellum
           JW20]
          Length = 404

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 57/170 (33%), Gaps = 12/170 (7%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRM 72
            D           + AG+P+++A+ V+  Q+++    E    V +    G++LS ++ + 
Sbjct: 64  KDLAVFCRQFSIVLEAGVPIANALDVLREQTTNRTLRECLDDVYDNIQKGIALSNAMRQH 123

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R  P          +    ++ G L      ++        +  K++           +
Sbjct: 124 PRIFP-----EMLINMVEAGEISGQLDLVFKRMAIQFEKENKLNQKIRGALTYPI---IV 175

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGIMVM 179
                  +  L+    P ++ VL +      +   + +A +        +
Sbjct: 176 TVVAIAVIMILMVAVVPTFVKVLADFDVEMPIYTRILIAVSGFFKSFWFI 225


>gi|332305385|ref|YP_004433236.1| Type II secretion system F domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172714|gb|AEE21968.1| Type II secretion system F domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 401

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/166 (9%), Positives = 48/166 (28%), Gaps = 8/166 (4%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             I   + AG+ +   + +I    ++  +R     +      G   S ++ +        
Sbjct: 69  RQIATMLSAGVTLIQTIDMIATGHNNPNMRKMLGEIGGEVKAGNPFSTALRKHPDQFDDL 128

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                   +    +  G L      ++      + +K+K++       A   +   +   
Sbjct: 129 YCD-----LVSTGEQSGALETIYDRIATYKEKAEALKSKIKKAMFYPVAVIVVAFIVTTI 183

Query: 140 VSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183
           +   V        +    +       +L ++      G+ V   ++
Sbjct: 184 LLIFVVPQFEEIFSSFGAELPAFTQFVLAISRFLQDYGLFVAAGLV 229



 Score = 34.7 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/131 (10%), Positives = 38/131 (29%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +  +  AG+P+  A+    G   +   R     V +    G  ++ ++        
Sbjct: 271 FSRTLATTFAAGVPLIGALDSAAGASGNAVFRDAILFVKKEVAGGTQMNTAMRATA---- 326

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                   T +    +  G + + L+ ++ I     +         +E    A +   + 
Sbjct: 327 --VFPDMVTQMVAIGEEAGAVDDMLSKIATIYEAEVDDMVDGLTSLLEPMIMAVLGVVIG 384

Query: 138 FCVSTLVYFTS 148
             +  +     
Sbjct: 385 GLIVAMYLPIF 395


>gi|104781449|ref|YP_607947.1| type II secretion pathway protein F (XcpS-2) [Pseudomonas
           entomophila L48]
 gi|95110436|emb|CAK15144.1| putative type II secretion pathway protein F (XcpS-2) [Pseudomonas
           entomophila L48]
          Length = 401

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 57/179 (31%), Gaps = 17/179 (9%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D   A   +   + AGLP+  A+   + Q+    +      V      G+ L+++++   
Sbjct: 63  DLAWATRQLASLLAAGLPLEAALGATLEQAERKHIAQVLGAVRADVRSGMRLADALAERP 122

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R     +       +    +  G+L+  +  L+  + +R  ++ K+    +       + 
Sbjct: 123 R-----DFPDIYRALVAAGEESGDLARVMERLADYIEERNTLRGKIMTAFIYPGVVGLVS 177

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-----------IGIMVMRL 181
             +   + + V             D  G  L  +AA+  +            G      
Sbjct: 178 VGIVIFLLSYVVPQVVSAFTQARQDLPGLTLAMLAASDFVRAWGALCFALLAGAFWGWR 236



 Score = 35.9 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/130 (10%), Positives = 35/130 (26%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+        +    +           G+ L+ +++       
Sbjct: 270 FASTLAILGSAGVPLLRALEAARQTLGNDCLDQCVSEATARVREGVGLATALAV------ 323

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +        +    +  G+L   L   +  L      +A      +E      +   + 
Sbjct: 324 GKVFPPLLIHLIASGEKTGDLPPMLDRAADSLAKDIERRAMGMTALLEPLMIVVMGAVVL 383

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 384 LIVMAVLMPI 393


>gi|94984864|ref|YP_604228.1| type II secretion system protein [Deinococcus geothermalis DSM
           11300]
 gi|94555145|gb|ABF45059.1| type II secretion system protein [Deinococcus geothermalis DSM
           11300]
          Length = 406

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/185 (10%), Positives = 52/185 (28%), Gaps = 23/185 (12%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72
                    +   + AG+P+  A+A++  Q  +       + +      G  LSE++ + 
Sbjct: 66  KQVAIFSKQLATLINAGVPLVQALAILQRQIENKTFQNIIKSIRTDVESGTPLSEALVKH 125

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +       +     +    +  G L   L  ++        ++ K+++           
Sbjct: 126 PK-----VFNRLYINLVRAGETSGTLDSILERIAAFQEKELGLRGKLKSALTYPVVVLVF 180

Query: 133 IGSLPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGI 176
              + + + T +     G +  L                     G ++L   A   +   
Sbjct: 181 AIGITYFLLTTIVPQFAGILAQLNAPLPLITRALMAVSDFLQHSGLLILVFVAVL-VFAY 239

Query: 177 MVMRL 181
                
Sbjct: 240 RWFYK 244


>gi|282897952|ref|ZP_06305947.1| type II secretion system protein [Raphidiopsis brookii D9]
 gi|281197096|gb|EFA71997.1| type II secretion system protein [Raphidiopsis brookii D9]
          Length = 419

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/168 (11%), Positives = 60/168 (35%), Gaps = 8/168 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                   V +G+ +  ++ +I  Q     ++    ++      G++LS+S+ +      
Sbjct: 84  FSRQFATLVNSGVTIIKSLDIISPQCPNPKLKKALNQISTDIKTGINLSDSMKKHPDC-- 141

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    ++GG L + L  L+++L D   ++ ++++             ++ 
Sbjct: 142 ---FDALYITMVQAGEVGGVLDDVLHRLAKLLEDLAKLQNQIKSALSYPIFVGCFAIAIA 198

Query: 138 FCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMI 183
             ++  +          +  +      +L+  +      G +V+  +I
Sbjct: 199 LGMTIFIIPIFANVFKNMGVELPIITKILISFSQTLNSWGFLVIITLI 246


>gi|77748708|ref|NP_643550.2| fimbrial assembly protein [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 400

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/168 (11%), Positives = 54/168 (32%), Gaps = 6/168 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +++G+P+  A+ +I  GQ +  +R+   ++      G SL E++S+ 
Sbjct: 60  KDISFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRTMVGQIRTDIEGGASLYEAVSKH 119

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L  ++    + + +K K++           +
Sbjct: 120 PVQ-----FDELYRNLVKAGEGAGVLETVLDTVATYKENLEALKGKIKKALFYPAMVMAV 174

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
              +   +   V             +      + V  +  ++    + 
Sbjct: 175 AMLVSAILLVWVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWLM 222



 Score = 35.5 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 46/131 (35%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77
                  + +AG+P+ +A+ ++ G + + V      R+ E   +G  ++ ++ ++  +  
Sbjct: 269 FARTTAVTFKAGVPLVEALGIVAGATGNSVYEKAVLRMREDVSVGYPVNVAMKQVNLFPH 328

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         ++   +  G L   L  ++       N      +  +E     +I   + 
Sbjct: 329 M------VVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG 382

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 383 GMVIGMYLPIF 393


>gi|91200636|emb|CAJ73686.1| similar to general secretory system type II protein, membrane
           component [Candidatus Kuenenia stuttgartiensis]
          Length = 417

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/184 (12%), Positives = 56/184 (30%), Gaps = 17/184 (9%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
                     +     AGLP+  ++ ++  Q     ++    +VIE    G + S +++R
Sbjct: 76  SKHLTLFTRQLSTLQDAGLPIIRSLQILAAQLKKGMLKKTVLKVIENIEGGSTFSGALAR 135

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             R             I    ++ G+L   L  L+      + +  K+    +       
Sbjct: 136 HPR-----VFDKLYVNIVKAGEISGSLDIILRRLADFREKMERLIRKIITAMIYPSVVVV 190

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-----------IGIMVMR 180
           +  ++   +   V        + L  D      + +  +  L           +G  +  
Sbjct: 191 VAAAILIGLMIFVVPNFAKIFDELGLDLPAPTRMLIQFSTALKTNWMYLPAVPVGTFIFY 250

Query: 181 LMIN 184
            ++ 
Sbjct: 251 KLVR 254


>gi|21109581|gb|AAM38086.1| fimbrial assembly protein [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 418

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/168 (11%), Positives = 54/168 (32%), Gaps = 6/168 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +++G+P+  A+ +I  GQ +  +R+   ++      G SL E++S+ 
Sbjct: 78  KDISFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRTMVGQIRTDIEGGASLYEAVSKH 137

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L  ++    + + +K K++           +
Sbjct: 138 PVQ-----FDELYRNLVKAGEGAGVLETVLDTVATYKENLEALKGKIKKALFYPAMVMAV 192

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
              +   +   V             +      + V  +  ++    + 
Sbjct: 193 AMLVSAILLVWVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWLM 240



 Score = 35.5 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 46/131 (35%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77
                  + +AG+P+ +A+ ++ G + + V      R+ E   +G  ++ ++ ++  +  
Sbjct: 287 FARTTAVTFKAGVPLVEALGIVAGATGNSVYEKAVLRMREDVSVGYPVNVAMKQVNLFPH 346

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         ++   +  G L   L  ++       N      +  +E     +I   + 
Sbjct: 347 M------VVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG 400

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 401 GMVIGMYLPIF 411


>gi|330890301|gb|EGH22962.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 403

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/164 (12%), Positives = 54/164 (32%), Gaps = 4/164 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             D  +    +   + AGLP+ +A+   V Q+                +   +  + +  
Sbjct: 63  DADLASVTRQLASLLSAGLPLDEALGATVEQAE-RQHIIQTLSAIRTDVRSGMRLAEALA 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R     +       +    +  G+L+  +  L+  + +R  ++ K+    +       +
Sbjct: 122 ARPRDFPD---IYRALIGAGEESGDLARVMERLADYIEERNGLRGKILTAFIYPGVVGLV 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
             ++   + + V        +    D  G  L  +AA+  ++  
Sbjct: 179 SIAIVIFLLSYVVPQIVSAFSQARQDLPGLTLAMLAASDFILAW 222



 Score = 34.3 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       S+  +             G++L+ ++        
Sbjct: 272 FASTLAILGAAGVPLLRALDAARQTLSNDRLSLAVSEATSRVREGVNLAVALRI------ 325

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +        +    +  G+L   L   ++ L      +A      +E      + G + 
Sbjct: 326 EKVFPPLLIHLIASGEKTGSLPPMLDRAAQTLSRDIERRALSMTALLEPLMIVIMGGVVL 385

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 386 VIVMAVMLPI 395


>gi|15602712|ref|NP_245784.1| hypothetical protein PM0847 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721156|gb|AAK02931.1| TadC [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 284

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 68/156 (43%), Gaps = 4/156 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--TQ 59
             ++K +  K + D P  +D++  +V+ G+ +  A+  +              ++    +
Sbjct: 127 NAILKAKVKKIMVDLPGFIDLVAVNVQTGISIDAALKQVAIDFKKLNPDLTYVMLRIIRK 186

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                LS+++  +   +P  E+  F TV+      G ++   L  LS  +R+ + +  + 
Sbjct: 187 SELTGLSQALQDLSISLPTTEIRMFCTVLQQSLNFGSSIYSHLIQLSADIREIQLLIIEE 246

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  ++ AK S  +I  + F +  L+   +PG M V 
Sbjct: 247 KLGTLSAKMSIPLILFIMFPIIILI--LAPGIMRVF 280


>gi|256393177|ref|YP_003114741.1| type II secretion system protein [Catenulispora acidiphila DSM
           44928]
 gi|256359403|gb|ACU72900.1| type II secretion system protein [Catenulispora acidiphila DSM
           44928]
          Length = 296

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 63/171 (36%), Gaps = 2/171 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +      + +  ++ A   +  ++      +  P+R+E   +      G  L E++    
Sbjct: 104 EAIATFTEALRDTLGAAAGLEQSILAAAANAPAPIRAEVAELAANLKAGTRLDEALRTFA 163

Query: 74  RYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + +   Q   NL E L  L+R  R++     ++ A     ++S  I
Sbjct: 164 ADLGDATGDLVVAALVLASRQQARNLGEVLGELARYAREQAAQSMRITADRARTRSSVRI 223

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           I +  F V+ ++      YM    + P G ++L V A    +  M +  + 
Sbjct: 224 IVAFVFAVAGVLVGMDGSYMTP-YSSPAGQIVLAVVAGVFGVAFMWLHKIA 273


>gi|222834143|gb|EEE72620.1| predicted protein [Populus trichocarpa]
          Length = 194

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 59/106 (55%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L  KR  +     P+A+D+I R++RAG   + A+ ++  +   P+  EFR   E  + G
Sbjct: 72  RLRTKRLKQMEVQLPDAVDMISRALRAGHSFAGALGMVGQEIKAPLGPEFRTTFEEINYG 131

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRI 108
           ++L E+++ +   +P+ ++ +F   + +Q + GGNL+E L  +  +
Sbjct: 132 VALDEAMTNLAMRVPVGDLRYFVIAVLIQRESGGNLAEILDTIGTM 177


>gi|271962852|ref|YP_003337048.1| hypothetical protein Sros_1307 [Streptosporangium roseum DSM 43021]
 gi|270506027|gb|ACZ84305.1| hypothetical protein Sros_1307 [Streptosporangium roseum DSM 43021]
          Length = 295

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 68/174 (39%), Gaps = 2/174 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +      + +  ++     +  A+   +  ++  +R   R +++  H  + L +++    
Sbjct: 106 EGLAAWTESLRDTIAGAAGLEQAIPSSIRAAAPMLRPHLRALVDRLHTRMPLPDALRLFA 165

Query: 74  RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + + S+  G  L + L  L+   R+  +M+ +V+A     + S  I
Sbjct: 166 DELDDPSADLVVAALILNSKLRGPGLRDVLGALAVSAREELDMRRRVEAERRSTRRSVQI 225

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           +       +  +   +P Y+    ++  G  +L V A F   G   MR + +FD
Sbjct: 226 VVGTAVAFAVALVVFNPSYVEE-YDNTLGQAVLVVVAGFFGAGFAWMRRLAHFD 278


>gi|319795559|ref|YP_004157199.1| type II secretion system f domain [Variovorax paradoxus EPS]
 gi|315598022|gb|ADU39088.1| Type II secretion system F domain [Variovorax paradoxus EPS]
          Length = 295

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 66/147 (44%), Gaps = 1/147 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           M+   KKR    L   P  LD+I    +AGL ++ A+A  V +     +  EF R++   
Sbjct: 138 MRDRRKKREKNILRTLPGYLDMITLCCQAGLSLTGAIAQAVQKGPGGALGIEFDRMMREM 197

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G+S  ++++ M   +  + +    + ++    LG +L++ L+ +S   R  +   A+ 
Sbjct: 198 RTGVSRMDALNAMAERLDNKHIKSLVSNLTQAESLGASLADTLSAISDQRRTERFQHAEK 257

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146
            A+    K    ++  +      +++F
Sbjct: 258 LAMEAPVKMIGPLVIFIFPVTFIIIFF 284


>gi|301058142|ref|ZP_07199194.1| general secretion pathway protein F [delta proteobacterium NaphS2]
 gi|300447774|gb|EFK11487.1| general secretion pathway protein F [delta proteobacterium NaphS2]
          Length = 409

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 62/166 (37%), Gaps = 6/166 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AGLPV  A+++++  + +   +     +++T   G  LS+++++  R   
Sbjct: 75  FTQDLATLLEAGLPVDRALSLLIESAENDRFKKVIGDILKTVQGGGYLSDALAKHPRA-- 132

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               S F   +    + GG L   L+ L   L   + +K  +++  +       + G   
Sbjct: 133 ---FSSFYVSMVRAGEAGGVLEAVLSRLGEFLESAQELKDYIKSAMVYPIFLVCVGGLSI 189

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             + T V        + +           +  + +L     + +++
Sbjct: 190 IVLLTFVIPKFSIIFSDMGQTIPLSTRFLLGVSHLLQSYWWVIIIV 235



 Score = 37.8 bits (86), Expect = 0.77,   Method: Composition-based stats.
 Identities = 14/141 (9%), Positives = 38/141 (26%), Gaps = 5/141 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           +       +    ++G+P+  A+ ++     + V S     + T+           R   
Sbjct: 274 EVARFARTLGTLTKSGVPILQALMLVKDIIGNKVVSGVMETVYTRVKEGDRLSKPLR--- 330

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                     +  +    +  G L   L  ++           K     +E     ++  
Sbjct: 331 --DTGIFPPLAIQMITVGEETGRLDRMLLRVAESYEKMVRNMVKRLISLLEPTMILFMGL 388

Query: 135 SLPFCVSTLVYFTSPGYMNVL 155
            + F V +++           
Sbjct: 389 VVGFVVVSMLMAVFSMNEMPF 409


>gi|294139027|ref|YP_003555005.1| type IV pilus biogenesis protein PilC [Shewanella violacea DSS12]
 gi|293325496|dbj|BAJ00227.1| type IV pilus biogenesis protein PilC [Shewanella violacea DSS12]
          Length = 423

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/172 (11%), Positives = 50/172 (29%), Gaps = 6/172 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMV 73
           D       I   + AG+P+   + ++          E    ++     G+ LS+++    
Sbjct: 85  DIAMITRQIATMLSAGVPLVTTIEMLGRGHEKVKMRELLGTILNDVQAGIPLSDALR--- 141

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                Q        +    +  G+L      ++      + +K+K++       A   + 
Sbjct: 142 --PHRQYFDDLYVDLVAAGEHSGSLDAVFDRVATYREKTEALKSKIKKAMFYPAAVVVVA 199

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             +   +   V        +    +      L +  +  L     +  +I  
Sbjct: 200 FGVTALLLLFVVPQFEEIFSGFGAELPAFTQLVIGISDALQASWYIFAVIII 251


>gi|168701870|ref|ZP_02734147.1| type IV fimbrial assembly protein PilC [Gemmata obscuriglobus UQM
           2246]
          Length = 414

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 55/167 (32%), Gaps = 6/167 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
                           AGLPV  ++ ++  Q     +++    V++    G +LSE++SR
Sbjct: 73  QKQLVTFTRQFSTLQDAGLPVLRSLRILERQMPPSALKNSMIDVVDDVESGSALSEALSR 132

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +       S     +    + GG L   L  L+  L   +++K+K+    +      +
Sbjct: 133 HPKA-----FSKLYVNMVRAGEAGGALEIILQRLADFLEKAQSLKSKIIGAMVYPAVVIF 187

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +  ++   +   +        +          L  +  +  +     
Sbjct: 188 VAVAILTFIMVAIIPKFKKIFDEFGMTLPWATLTLIRVSNWMSEYWW 234



 Score = 35.9 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/128 (11%), Positives = 43/128 (33%), Gaps = 5/128 (3%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           +  +   + +G+P+ +A++++   +++ V     + I              R  R     
Sbjct: 283 MRTLGTLISSGVPILEAISIVKETANNAVFERMFQRIFESIREGDTIADPLRESRL---- 338

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
            V      +    +  G+L   L  ++    +  +   K     +E     ++  ++   
Sbjct: 339 -VDAMVVNMVEVGEETGDLDTMLYKIADFYDEWVDNLVKSLISLLEPIMIVFLGFTIGAI 397

Query: 140 VSTLVYFT 147
           V +L    
Sbjct: 398 VISLFLPL 405


>gi|301058210|ref|ZP_07199260.1| putative type IV fimbrial assembly protein PilC [delta
           proteobacterium NaphS2]
 gi|300447712|gb|EFK11427.1| putative type IV fimbrial assembly protein PilC [delta
           proteobacterium NaphS2]
          Length = 402

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/175 (13%), Positives = 55/175 (31%), Gaps = 13/175 (7%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
             D           + AGLP+   + ++  Q  +   +   ++V+     G SL+ES+ +
Sbjct: 62  SKDLVIFTRQFSTMIDAGLPLVQGLTILTEQMENKTFKKILKQVVTDVEGGASLAESLQK 121

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +             +    ++GG L   L  LS  +   + +K++++           
Sbjct: 122 HPK-----VFDSLFVNLVAAGEVGGILDTILQRLSTHIEKAQKLKSRIKGAMTYPAIVVA 176

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-------AFMLIGIMVM 179
           I   +   +   V            +       + V            +IG  ++
Sbjct: 177 IAILVVSVIMIFVIPVFESLFRDFGSALPLPTQIVVNISRFTKNNIHYMIGGFII 231



 Score = 38.9 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+P+  A+ ++   S + V  E         +  S++E           
Sbjct: 271 FTRTLGTMIASGVPIISAMEIVAKTSGNVVLEEVI-----MDVRSSIAEGQPITEPLSEN 325

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +        +    +  G L   L  ++    D  +         +E     ++ G++  
Sbjct: 326 EIFPNMVVQMIGVGEATGALETMLEKIADFYDDEVDAAVDALTSMLEPLLMVFLGGTIGG 385

Query: 139 CVSTLVYFTS 148
            V  +     
Sbjct: 386 LVVAMYLPIF 395


>gi|262164953|ref|ZP_06032691.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio mimicus VM223]
 gi|262027333|gb|EEY46000.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio mimicus VM223]
          Length = 291

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 59/154 (38%), Gaps = 4/154 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--TQHL 61
             KK T K     P  LD++   V  G+ +   +  +  +           V +   +  
Sbjct: 137 RGKKITKKISSRLPFLLDLMNVCVHTGMTIEACLEYLAFELRTVDHHLAYVVKKTVERSK 196

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
            + L ++++     +P  E   F   ++   + G ++   LA L+  +R+   M  + + 
Sbjct: 197 LVGLEKALNEFYDLVPTAEAQSFVMTMTQSLKYGSSIGPVLATLASDIREMNMMDLEEKI 256

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
             M AK S  +I  +   +  L+    PG M + 
Sbjct: 257 GKMGAKMSIPLIAFIMVPIIILIAA--PGIMRMF 288


>gi|256003440|ref|ZP_05428431.1| type II secretion system protein [Clostridium thermocellum DSM
           2360]
 gi|255992730|gb|EEU02821.1| type II secretion system protein [Clostridium thermocellum DSM
           2360]
 gi|316940138|gb|ADU74172.1| Type II secretion system F domain [Clostridium thermocellum DSM
           1313]
          Length = 404

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 57/170 (33%), Gaps = 12/170 (7%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRM 72
            D           + AG+P+++A+ V+  Q+++    E    V +    G++LS ++ + 
Sbjct: 64  KDLAVFCRQFSIVLEAGVPIANALDVLREQTTNRTLRECLDDVYDNIQKGIALSNAMRQH 123

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R  P          +    ++ G L      ++        +  K++           +
Sbjct: 124 PRIFP-----EMLINMVEAGEISGQLDLVFKRMAIQFEKENKLNQKIRGALTYPI---IV 175

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGIMVM 179
                  +  L+    P ++ VL +      +   + +A +        +
Sbjct: 176 TVVAIAVIMILMVAVVPTFVKVLADFDVEMPIYTRILIAVSGFFKSFWFI 225


>gi|294630591|ref|ZP_06709151.1| integral membrane protein [Streptomyces sp. e14]
 gi|292833924|gb|EFF92273.1| integral membrane protein [Streptomyces sp. e14]
          Length = 283

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 58/162 (35%), Gaps = 1/162 (0%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   VRAG    +A+       S    +    V+     G  +  +++   R    + + 
Sbjct: 118 LAGEVRAGRQPGEALLCAARD-SGGFGAAEAAVLAAARFGGDVPGALAAAARRPGAEGLR 176

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
             +    V    G  L+  L  L   LR  ++ +  ++A    A+A+A ++  LP     
Sbjct: 177 GLAACWRVTVDQGAGLAAGLDRLEAALRADRDQRCDLRAQLAGARATAVMLAGLPVLGLL 236

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           L        ++VL++   G   L V       G+     ++ 
Sbjct: 237 LGTAMGADPLHVLLHTGAGLGCLVVGGVLEGAGLWWASGIVR 278


>gi|225375137|ref|ZP_03752358.1| hypothetical protein ROSEINA2194_00761 [Roseburia inulinivorans DSM
           16841]
 gi|225213011|gb|EEG95365.1| hypothetical protein ROSEINA2194_00761 [Roseburia inulinivorans DSM
           16841]
          Length = 415

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 45/154 (29%), Gaps = 11/154 (7%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----------PVRSEFRRV 55
           K+R  K   ++P  +  +   + AG+ +  A   I    S+          P+  E    
Sbjct: 258 KRRKEKLQSEYPELVSKLTILLGAGMTLFSAWNKIATSYSNKRKNNTIPIHPLYEEMLIT 317

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKN 114
                 G+  + +  R      L     F +++     +    L + L        + + 
Sbjct: 318 CHEIESGVGEARAYERFGERCGLHRYRKFCSLLVQNLRKGTRGLVQLLEQEVSDAFEERK 377

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
             AK        K    ++      +  ++    
Sbjct: 378 NLAKKSGEEAGTKMLFPMMMMFGIIIVIIMVPAF 411


>gi|296103140|ref|YP_003613286.1| general secretion pathway protein F [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057599|gb|ADF62337.1| general secretion pathway protein F [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 402

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 14/169 (8%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74
                  +   V A LP+  A+  I  Q+ D  + +    + E    G +L ++ S+  R
Sbjct: 65  LSMFTRQLSTLVNASLPLESALKAISKQTEDKKLAAMVTEIREKVVEGHTLFDAFSQFPR 124

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                        + +  +  G+L + L  L+     R+ MK+K+    +       +  
Sbjct: 125 T-----FDKLYCTLVMAGEKTGHLGDVLEKLAEYNEQRQKMKSKLTQAMVYPIT---LTV 176

Query: 135 SLPFCVSTLVYFTSPGYMNVLIND-----PRGHMLLGVAAAFMLIGIMV 178
                +S L+    P  +   ++           L+ V+      GI +
Sbjct: 177 VAVAVISILLVAVVPQVIEQFVHMKQQLPITTRTLIAVSDFLQAYGIYI 225


>gi|330815001|ref|YP_004358706.1| General secretion pathway protein F [Burkholderia gladioli BSR3]
 gi|327367394|gb|AEA58750.1| General secretion pathway protein F [Burkholderia gladioli BSR3]
          Length = 405

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/175 (13%), Positives = 56/175 (32%), Gaps = 6/175 (3%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSE 67
                 +       +   + AGLP+ +++AV+  Q+  D +R     +      G SL+ 
Sbjct: 61  RKLSQREQAILTRQLASLLTAGLPLGESLAVLTEQAERDYIRELMAAIRAEVLGGHSLAS 120

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +++   R     +       +    +  G L   L+ L+  +  R  +K K+        
Sbjct: 121 ALAEHPR-----DFPEIYRALVSAGEHTGKLGIVLSRLADYIEQRNALKQKIVLAFTYPG 175

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
               I   +   + + V                   ++ +A +  +       L+
Sbjct: 176 IVTLIAFGIVTFLLSYVVPQVVNVFASTKQQLPFLTIVMMALSDFVRHWWWAMLI 230



 Score = 36.6 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 36/130 (27%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       S+   S      I     G SLS +         
Sbjct: 274 FASTLAILTAAGVPILRALQAAGETLSNRAMSGNIDDAIVRVREGTSLSRA------LNH 327

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           ++        +    +  G+++  L   +         +       +E      + G + 
Sbjct: 328 VKTFPPVLVHLIRSGEATGDVTTMLDRAAEGEARELERRTMFMTSLLEPLLILAMGGIVL 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 VIVLAVMLPI 397


>gi|319761504|ref|YP_004125441.1| general secretion pathway protein f [Alicycliphilus denitrificans
           BC]
 gi|330823373|ref|YP_004386676.1| general secretion pathway protein F [Alicycliphilus denitrificans
           K601]
 gi|317116065|gb|ADU98553.1| general secretion pathway protein F [Alicycliphilus denitrificans
           BC]
 gi|329308745|gb|AEB83160.1| general secretion pathway protein F [Alicycliphilus denitrificans
           K601]
          Length = 409

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 50/164 (30%), Gaps = 4/164 (2%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                   +   V AGLP+  A+  +  ++ D  +      +  +    S          
Sbjct: 71  ALAIWTRQLAGLVGAGLPLERALTALADEADDERQRHLVAALRAEVNAGS----TFARAL 126

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
               +E S     +    +  G L + L +L+  L  R+ ++AK+   ++       +  
Sbjct: 127 AQHPREFSDIYCAVIGAGEGSGGLGQVLESLADDLEARQQLRAKLIGAALYPAIVTLVAI 186

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            +   +   V                   +L +A +  + G   
Sbjct: 187 VIVLFLVGYVVPQVASVFAGSKRALPLLTVLMLALSDFVRGYGW 230



 Score = 35.5 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 39/130 (30%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       ++          +     G  L+ ++++  R+  
Sbjct: 278 FAGTLAMLAGAGVPILRALQAAAETLNNRALRADALEALVLVREGAPLASALAQKKRFPG 337

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                    + +   +  G L   LA  +  L      +A   A  +E      +   + 
Sbjct: 338 ------LVAMFARLGEQTGQLPTMLARAASQLGTEVQRRAMQLATILEPLLIVTMGLVVM 391

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 392 LIVLAVLQPI 401


>gi|95929090|ref|ZP_01311835.1| type II secretion system protein [Desulfuromonas acetoxidans DSM
           684]
 gi|95134991|gb|EAT16645.1| type II secretion system protein [Desulfuromonas acetoxidans DSM
           684]
          Length = 410

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 60/174 (34%), Gaps = 7/174 (4%)

Query: 6   KKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGL 63
           K+R  K   DD       +    R+G+P+  ++  ++  S +  ++   R VIE    G 
Sbjct: 62  KRRPKKVRLDDLILFCRQMYSLTRSGVPMMRSLYGLIESSQNPTMQQALRGVIENLESGR 121

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            LS +++      P        T +    +  GNL E+   L   L   K  + +++A  
Sbjct: 122 DLSGAMAAFPEVFPN-----LMTRMVQVGESSGNLEESFRQLGEYLEFEKLTREQIKAAL 176

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
                    IG     +S  V  T       L  D      + +  +   +   
Sbjct: 177 RYPTFVIIAIGVAMTILSLFVIPTFEKVFAGLGADLPLPTKIIMGISHFSVAYW 230



 Score = 38.6 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 12/136 (8%), Positives = 34/136 (25%), Gaps = 5/136 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
                            +G+P+  A+        +    E    +      L   ++++R
Sbjct: 272 MRATLARFARAFAMGYGSGVPLVQALGYTARAIENSYLGEK---LNEMRNQLERGDTLTR 328

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                 L+  +     +    +  G++   L  ++           K    ++E      
Sbjct: 329 SAAN--LKIFTPLVLQMLAVGEESGSVDSMLLEVAGFYEREVEYDLKNLTSAIEPILIVI 386

Query: 132 IIGSLPFCVSTLVYFT 147
           I   +      +    
Sbjct: 387 IGAMVLVLALGVFLPM 402


>gi|83590395|ref|YP_430404.1| type II secretion system protein [Moorella thermoacetica ATCC
           39073]
 gi|83573309|gb|ABC19861.1| type II secretion system protein [Moorella thermoacetica ATCC
           39073]
          Length = 402

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 55/172 (31%), Gaps = 7/172 (4%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV-IETQHLGLSLS 66
           R      D       +   + AGLP+  A+ V+  Q  +P   E   V ++    G +  
Sbjct: 57  RRPVSRRDLALFCRQLATMLGAGLPIMSALRVLQRQVENPSLRESIGVLLQDLESGEAFY 116

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++ R  R  P               +LGG L E L  L+  L     ++ KV++     
Sbjct: 117 RALGRQPRVYPP-----IVIHTVEAGELGGALDETLERLAGHLEREHEVEEKVKSALTYP 171

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
              + +       + T V  +    +N L   P       +      +    
Sbjct: 172 AVVSLVAVGAVIFLLTYVLPSFQVMLNSL-QVPLPWPTRMILGLSEGLRRWW 222


>gi|325066927|ref|ZP_08125600.1| Type II secretion system F domain [Actinomyces oris K20]
          Length = 314

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 53/146 (36%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   + KR ++     P+ ++++  +V AG     A+  IV      +  E    +    
Sbjct: 159 LTRAVAKRLSRIEAQLPDVVELLALAVGAGQGPVPAIERIVALGRGDLVDELSSTLTDIR 218

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  LS ++ RM R +    V+     I V  + G  L+E L + +  +R+        +
Sbjct: 219 SGTVLSTALDRMERRVGSVHVTRLCEAIIVALERGTPLAEVLRSQAADVREAARQDLMEE 278

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146
               E      ++  +         F
Sbjct: 279 GGRREIAQMVPVVFLVLPITVVFALF 304


>gi|269128337|ref|YP_003301707.1| type II secretion system protein [Thermomonospora curvata DSM
           43183]
 gi|268313295|gb|ACY99669.1| type II secretion system protein [Thermomonospora curvata DSM
           43183]
          Length = 331

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 71/183 (38%), Gaps = 2/183 (1%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R    L+      + +  ++   + +  A+   V  ++  ++   R +++  H  + +
Sbjct: 95  ERRAMARLEALAAWTESLRDTIAGAVGLEQAIPSSVRAAAPALQQPLRTLVDRLHTRMPM 154

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
            E++ R    +           + +     G  L + L  LS   R   +M+ +V+A   
Sbjct: 155 PEALRRFADDLNDPSADLVVAALILNARLRGPGLRDMLTALSASARAELDMRRRVEADRR 214

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
             + S  ++  +    + L+   +  Y+    +   G M+L V  A      + +R +  
Sbjct: 215 ATRRSVNVVVGVSVGTALLLTIFNRSYVEP-YDGLLGQMVLCVVLALYAAAFLWLRRLAR 273

Query: 185 FDV 187
           +D+
Sbjct: 274 YDM 276


>gi|32452628|gb|AAP43990.1| TadC [Aggregatibacter actinomycetemcomitans]
          Length = 288

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 69/157 (43%), Gaps = 4/157 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +  ++K +  K ++D    +D++  +++ G+ +  A+  +              ++    
Sbjct: 130 IGSILKSKIKKIMNDLAGFIDLVAVNLQTGMGIEAALKHVATDFKILNPDLTYVMLRIIR 189

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +     +S+++  +   +P  E+  F TV+      G ++   L  LS  +R+ + +  +
Sbjct: 190 KSEITGMSQALQDLSVSLPTAEIRMFCTVMQQSLNFGSSIYHQLVQLSTDIREIQLLAIE 249

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            +  ++ AK S  +I  + F +  L+   +PG M V 
Sbjct: 250 EKLGTLSAKMSVPLILFIMFPIIILI--LAPGVMRVF 284


>gi|330830427|ref|YP_004393379.1| Flp pilus assembly protein TadC [Aeromonas veronii B565]
 gi|328805563|gb|AEB50762.1| Flp pilus assembly protein TadC [Aeromonas veronii B565]
          Length = 294

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 62/149 (41%), Gaps = 3/149 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           ++   +K  A      P+A+D++V SV AGL +  A+  +          +  +F R   
Sbjct: 135 LQWRARKVKAAQQKVVPDAIDLLVISVEAGLALDRALLRVGHYLEALEPGLARQFLRTHA 194

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +    +  ++R+     L E+   +  + +  Q G  L+E +  +S+  R  + +  
Sbjct: 195 EIQMRGDQASCLARLAWRTGLPELDRLANTLQMAQQYGSPLAETMRTISQEARQMRRLAL 254

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF 146
           + QA S+  K +   +  +   +  L+  
Sbjct: 255 EEQAGSLPGKITLIQMALIMLPMLVLIIA 283


>gi|172035334|ref|YP_001801835.1| pilin biogenesis protein [Cyanothece sp. ATCC 51142]
 gi|171696788|gb|ACB49769.1| pilin biogenesis protein [Cyanothece sp. ATCC 51142]
          Length = 404

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 57/166 (34%), Gaps = 10/166 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                   + AG+ +   + V+  Q ++  ++     +      G+SLSE++ +      
Sbjct: 69  FSRQFSVMINAGVAIVRCLGVLADQATNPKLKKALLAISAEVQQGVSLSEALGK-----H 123

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    + GG L E L  L+++L D   ++ ++++          +   + 
Sbjct: 124 EDCFDQLYVSMVEAGETGGVLDEVLNRLAKLLEDMARLQNQIKSAMAYPVTVGILAVIVF 183

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           F ++  +     G    L  +              L GIM    ++
Sbjct: 184 FAMTIFLIPVFAGIFEDLGAELPALTQFM----LYLSGIMRSWKIL 225



 Score = 36.6 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/134 (8%), Positives = 38/134 (28%), Gaps = 7/134 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
              +     R+G+P+  ++ ++     +  + +           G  +S ++        
Sbjct: 273 FCRVFGTLTRSGVPILTSLEIVCNTVGNKVIANAVAGAQAEIQQGGMMSLALQNA----- 327

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +  +    +  G L   +  ++    D      K     +E      I G + 
Sbjct: 328 -NVFPQLAIQMICIGEETGELDAMMMKVADFYEDEVEQAVKALTSVIEPLMMVLIAGMVG 386

Query: 138 FCVSTLVYFTSPGY 151
             + ++       +
Sbjct: 387 VILLSMYLPMFKIF 400


>gi|21234166|ref|NP_639743.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
 gi|13620652|emb|CAC36691.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
          Length = 330

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/181 (11%), Positives = 58/181 (32%), Gaps = 4/181 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            + R  +        L+ +     AG+ +   +      +  P+ +  R + E    G+ 
Sbjct: 105 AQARIERLE-ALAQWLNHLAGVHTAGIGLPATIRASAKNAPSPIAASVRTLSERLRSGME 163

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAKVQALS 123
             ++       M          +    +      L++AL  ++  +  +      ++A  
Sbjct: 164 AHDAFELFADEMADGVFDHVVLLFQSHAVYKGPGLADALEAMAVTIHQQAADARDIEADR 223

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            + + SA ++         ++        +     P G ++L +        +M++R + 
Sbjct: 224 AKVRKSARLVSI--VICIVVLGCMLNEAWSAWYQTPPGQVVLALLGGGFAWTLMMLRRIA 281

Query: 184 N 184
            
Sbjct: 282 R 282


>gi|262273878|ref|ZP_06051691.1| MSHA biogenesis protein MshG [Grimontia hollisae CIP 101886]
 gi|262222293|gb|EEY73605.1| MSHA biogenesis protein MshG [Grimontia hollisae CIP 101886]
          Length = 405

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/165 (10%), Positives = 48/165 (29%), Gaps = 6/165 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVR 74
                      ++AG+P+  A+  +   ++D +       V      G  +S ++     
Sbjct: 66  LVIFSRQAYSLIKAGVPLLRAINGLAQSTTDKLLKTALENVASELSNGSPMSVAMRNHPN 125

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                  S     +    +  G L +A+  L+         + ++++          +I 
Sbjct: 126 -----VFSELFVSLVQVGENTGRLDDAMYQLAEYYEQEMETRRRIKSALRYPTFVMVVII 180

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
                ++  V     G       D      + +A +   +    +
Sbjct: 181 GAMAFLNVNVIPQFAGMFARFGADLPLPTQILMATSGFFVDFWWL 225



 Score = 40.1 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 38/133 (28%), Gaps = 7/133 (5%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVR 74
                      +RAG+P++ A+ +      +  +  E  ++      G++LS        
Sbjct: 269 MSRFSRTFALMLRAGVPLNTALHMSGEALDNHFLAGEVDKMKAAIESGVNLSVVTEDSEL 328

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           + P          +    +  G +   L   S       +   K  +  ME      + G
Sbjct: 329 FTP------LVHQMIQVGEETGQIDNLLLEASDFYDREVDYDLKTLSARMEPILLFIVAG 382

Query: 135 SLPFCVSTLVYFT 147
            +      +    
Sbjct: 383 MVLILALGIFLPM 395


>gi|301168390|emb|CBW27980.1| putative membrane protein [Bacteriovorax marinus SJ]
          Length = 404

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 66/145 (45%), Gaps = 1/145 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           +K  I+ R  + +   P  +D++  SV AGL    A+  +V ++    +  EF  +I+  
Sbjct: 247 IKGRIEMRQKEVIMAMPFCVDMLALSVEAGLDFVAAMTKVVEKAKKTALSEEFETMIKEI 306

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            +G S +E++  +   + L ++S F   +     +G ++   L  LS  +R +K+ + + 
Sbjct: 307 RIGASRAEALRNLAWRIDLIQISSFCATLIAADSVGASIGPILKALSMEIRQKKSSEVEK 366

Query: 120 QALSMEAKASAWIIGSLPFCVSTLV 144
              +   K    ++  +   V  +V
Sbjct: 367 AGATAATKILFPMLFLIVPAVFIVV 391


>gi|220913151|ref|YP_002488460.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
 gi|219860029|gb|ACL40371.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
          Length = 312

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 61/150 (40%), Gaps = 2/150 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +++R  + + +FP+  +++  +V AG   + A+  +   +   +  EF  ++     G  
Sbjct: 161 VRRREERMMAEFPSLAELMALAVGAGESATGALDRVCRSARGELSKEFSTILAETRAGKP 220

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L  ++        L  +  F   I V  + G  L++ L   ++ +RD    K  +   + 
Sbjct: 221 LVNALQEFSARTDLAPLVRFVDGIVVAVERGTPLADVLRAQAQDVRDTA--KRDLMEAAG 278

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           + + +  +         T+V+   PG   +
Sbjct: 279 KKEIAMMVPLVFGVLPLTVVFAVFPGISAI 308


>gi|152966970|ref|YP_001362754.1| type II secretion system protein [Kineococcus radiotolerans
           SRS30216]
 gi|151361487|gb|ABS04490.1| type II secretion system protein [Kineococcus radiotolerans
           SRS30216]
          Length = 417

 Score = 64.8 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 56/181 (30%), Gaps = 19/181 (10%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D           V +GL +  A++++  Q+    + +    V      G SLS ++++ 
Sbjct: 78  KDLALMSRQFATMVSSGLSLIRALSILAEQAESKKLAATLGEVRAEVETGASLSTTLAKH 137

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R  P          +    ++GG L + L  ++        +KAKV++          I
Sbjct: 138 DRIFPP-----LMINMIRAGEVGGFLDQVLVQIADNFESEVKLKAKVKSAMTYPVVVFII 192

Query: 133 IGSLPFCVSTLVYFTSPGYMNVL-------------INDPRGHMLLGVAAAFMLIGIMVM 179
                  +   +        + L             ++            A ++  I+  
Sbjct: 193 AILAVVGMLLFIVPVFTQMFSDLGGKLPLPTQILVYLSTAMKWGAPFGVVALVVGSIVWN 252

Query: 180 R 180
           R
Sbjct: 253 R 253



 Score = 40.1 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/137 (10%), Positives = 36/137 (26%), Gaps = 5/137 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                   +   +R+G+P+  ++ ++   + + V            +  S+    S    
Sbjct: 282 ALSRFTRNLGTMLRSGVPILQSLEIVGNAAGNVVIR-----RAAIDVMESVRSGRSLAGP 336

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
               +        +    +  G L   L  +S                 +E    A + G
Sbjct: 337 LAEHKVFPAMVVQMMSVGEDTGALDSMLHKISDFYDQEVEATTDALTSLIEPLMIAVLGG 396

Query: 135 SLPFCVSTLVYFTSPGY 151
            +   +  L       +
Sbjct: 397 IIGSMIIALYMPIFGVF 413


>gi|124486274|ref|YP_001030890.1| hypothetical protein Mlab_1458 [Methanocorpusculum labreanum Z]
 gi|124363815|gb|ABN07623.1| type II secretion system protein [Methanocorpusculum labreanum Z]
          Length = 625

 Score = 64.8 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 55/152 (36%), Gaps = 3/152 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  K     P+    +   V+  + ++ A+ +   +    ++ + R +      G  LS
Sbjct: 405 RRIDKVEGALPDFCRQLSSLVKYNMTLTHAIELTAQEGKSYIQEDIRILSRDLLWGEKLS 464

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++ R    M    V     ++S       +LS  +       + R+++K + ++     
Sbjct: 465 SALKRFADRMKNLSVDRLVILLSQTEHFTNDLSLTIDLQYHEAKARESLKRERKSDMG-- 522

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158
                I+         +    S  ++N+++ +
Sbjct: 523 -VYVVIVFMAFAVFVFVQVIMSEVFLNIMMEN 553



 Score = 40.1 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 66/183 (36%), Gaps = 7/183 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHL- 61
           ++ R           +  +      G  +  +V  I            EFR+V+      
Sbjct: 100 MRSRKRFIEASMYEMVSFMYALHHCGATLYASVHSIAKYADFYGDAAKEFRQVVSDMDFC 159

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G     +I R+    P  ++ FF + +S   +  GN    L    + ++    +  +   
Sbjct: 160 GYDQFTAIQRLADTTPSDKLRFFLSELSSTYRSIGNAEVFLHGKLQEMQKESEVAQRSYL 219

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            S+ A A  +I   +   +  ++     G ++   +DP   +L  V    + IG ++  L
Sbjct: 220 SSLGAIAEMYITLFVAGPLFVVIVIMVIGLIS--GSDP--MILAIVVYLMLPIGTVIFLL 275

Query: 182 MIN 184
           +++
Sbjct: 276 LLD 278


>gi|318607112|emb|CBY28610.1| type IV fimbrial assembly protein PilC [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 399

 Score = 64.8 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 57/173 (32%), Gaps = 8/173 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
           +        +   ++AGLP+ + + ++  +    P +   + + +    G SLSE+++  
Sbjct: 59  ERLIAITRQLATLLQAGLPLVNCLQLLAQEIDALPWQCLLQEISQQVSQGQSLSEAMAHY 118

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P          +    +L GNL +    L      ++ ++ KV            +
Sbjct: 119 PHTFPQLYPP-----VIAMGELTGNLEQCCVQLVLHQERQQKLQKKVIKALKYPVFVCIV 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMI 183
              +   +  LV                     LL ++A     G  ++ L+ 
Sbjct: 174 ALVVSTVMLVLVLPEFAQIYQSFDTPLPVLTATLLFMSAFLTAYGPYLIALLT 226



 Score = 37.4 bits (85), Expect = 0.91,   Method: Composition-based stats.
 Identities = 16/134 (11%), Positives = 41/134 (30%), Gaps = 7/134 (5%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVR 74
                  +  +  AGLP++  +   +   ++   +   + + +    G+ L  +I++   
Sbjct: 265 LSQIFQTLAITQHAGLPLTAGLDAALRSINNDTYQQALKSIQKQIKQGIPLHIAITQHPL 324

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           + P          +    +  G L   L  L+   + +    A      +E      I  
Sbjct: 325 FPP------LCQQMVRVGEESGALDVLLEKLAGWQQQQTQDLADNLTQMLEPLLMLIIGS 378

Query: 135 SLPFCVSTLVYFTS 148
            +   V  +     
Sbjct: 379 IVGVLVIAMYLPIF 392


>gi|313140673|ref|ZP_07802866.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|313133183|gb|EFR50800.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 252

 Score = 64.8 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 5/169 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
               +  +  SVRAG  +SD +A +         +            L            
Sbjct: 80  LSGVIAHMSSSVRAGGMISDVLADV----DGSGFAGVPLTASRLKRLLMRQRMPGESAAQ 135

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                    +   ++  + G +L++ L  +    R  + +    ++     +A+A ++G+
Sbjct: 136 AEHVAF-ELAVACAMCERSGCSLADCLDVVGENHRISRLLHDSRRSAFAVPRATAALLGA 194

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           LP     L        + VL    +G+  L V  A   +G++ M  M+ 
Sbjct: 195 LPLVTIGLGELLGARPVQVLFGSAQGNACLAVGGAGYALGLLWMSSMMR 243


>gi|311693308|gb|ADP96181.1| type II secretion system protein [marine bacterium HP15]
          Length = 409

 Score = 64.8 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 55/171 (32%), Gaps = 6/171 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLS 66
           R    LD+       +    +AG+P+   +  +   + S  +      V      G +++
Sbjct: 61  RKKVTLDELIVFCRQMHALTKAGIPLIRTMRGLAETTRSPVLAEVLEDVTTRLEGGTTMA 120

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++    +       S     +    +  G L +A   LS IL   ++ K +++      
Sbjct: 121 TAMQAHPK-----VFSELFIAMIHVGENTGMLDDAFRRLSEILELERDTKRRLKQAMRYP 175

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
                 + S    V+ LV        N L  D      + V  +  L+   
Sbjct: 176 MFVIIALLSALMIVNFLVIPKFASVFNKLGADLPFLTQVLVGTSNFLLAYW 226



 Score = 42.4 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 15/132 (11%), Positives = 41/132 (31%), Gaps = 5/132 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                      + AG+PV+ A+ V+   + +   S   +      +   +    S +   
Sbjct: 272 LSRFSRNFATMLSAGMPVTTALTVVADTTDNAWISSHIK-----DMRAGIERGESLLRTA 326

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
              +  +     +    +  G++ + L N++    +  +   K  A S+E      +   
Sbjct: 327 RHSEMFTPLILQMIAVGEETGSVDDMLNNVADFYDEDVDYGLKRLAESIEPILIVAMGIL 386

Query: 136 LPFCVSTLVYFT 147
           +      +    
Sbjct: 387 VLILALGVFLPI 398


>gi|256826297|ref|YP_003150257.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547]
 gi|256689690|gb|ACV07492.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547]
          Length = 264

 Score = 64.8 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 68/178 (38%), Gaps = 2/178 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R     D+    LD +  ++ AGLP + A+ ++          E   V+     G  L  
Sbjct: 81  RVRVTDDEVLRLLDGLAAALSAGLPPAAALRLVADSGPAVPWLEP--VLGAGEQGGLLGA 138

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           S  ++        +   ++  ++  + G  L+ A+A  +  +R ++  +   Q+ +  A 
Sbjct: 139 SWKQVAAGHQSVALEQVASAWALSERSGAALAPAVAMAAETVRRQRESRQTAQSAASGAM 198

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           AS +++  LP                + +  P G +      A +++G +  R ++  
Sbjct: 199 ASMYMLSLLPLVGLAGAGALGWSPQELYLQQPLGLVSALAGVALLVVGWLASRRLVAL 256


>gi|297560195|ref|YP_003679169.1| type II secretion system F domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296844643|gb|ADH66663.1| Type II secretion system F domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 297

 Score = 64.8 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 63/174 (36%), Gaps = 2/174 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +      +++   +     +  AVA  V  + +PVR    R+ E    G     ++    
Sbjct: 105 EAVAAWTEMLRDLMAGAAGLHQAVAATVPIAPEPVREPVARLAERLRAGQPTQGALRAFA 164

Query: 74  RYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +        +  +S  +     +L   L +L+   R++  M  +V A     + S  I
Sbjct: 165 DEVDNPTADLVAAALSTAATRHATDLGTLLGSLAEAAREQAAMLVRVAASRARLRTSTRI 224

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           I      ++ L+   +PGY+    +   G ++L          ++ +  M  FD
Sbjct: 225 IVGTTVGMAALLMAFNPGYLEP-FDGFLGQVVLAGIGGLWAGALVWLSRMSRFD 277


>gi|258620798|ref|ZP_05715833.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573]
 gi|258624768|ref|ZP_05719699.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603]
 gi|262173889|ref|ZP_06041566.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio mimicus MB-451]
 gi|258582930|gb|EEW07748.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603]
 gi|258586996|gb|EEW11710.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573]
 gi|261891247|gb|EEY37234.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio mimicus MB-451]
          Length = 291

 Score = 64.8 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 59/154 (38%), Gaps = 4/154 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--TQHL 61
             KK T K     P  LD++   V  G+ +   +  +  +           V +   +  
Sbjct: 137 RGKKITKKISSRLPFLLDLMNVCVHTGMTIEACLEYLAFELRTVDHHLAYVVKKTVERSK 196

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
            + L ++++     +P  E   F   ++   + G ++   LA L+  +R+   M  + + 
Sbjct: 197 LVGLEKALNEFYDLVPTAEAQSFVMTMTQSLKYGSSIGPVLATLASDIREMNMMDLEEKI 256

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
             M AK S  +I  +   +  L+    PG M + 
Sbjct: 257 GKMGAKMSIPLIAFIMVPIIILIAA--PGIMRMF 288


>gi|257139199|ref|ZP_05587461.1| type II secretion system protein F [Burkholderia thailandensis
           E264]
          Length = 314

 Score = 64.8 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 62/146 (42%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   + +R        P+ALD++V    AG  ++ A+  +  +      P+  EF    +
Sbjct: 154 LGFAVARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELGTICPPLADEFSVCAD 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G   + +++ M   + L  +    T +    Q G  ++++L  LSR  R  + +  
Sbjct: 214 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 273

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K +  ++  +   V+ +
Sbjct: 274 EEKAAKLAPKMTLPMMLFVMPTVALI 299


>gi|123441047|ref|YP_001005036.1| type IV pilin biogenesis protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088008|emb|CAL10796.1| putative type II secretion system protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 399

 Score = 64.8 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 57/173 (32%), Gaps = 8/173 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
           +        +   ++AGLP+ + + ++  +    P +   + + +    G SLSE+++  
Sbjct: 59  ERLIAITRQLATLLQAGLPLVNCLQLLAQEIDALPWQCLLQEISQQVSQGQSLSEAMAHY 118

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P          +    +L GNL +    L      ++ ++ KV            +
Sbjct: 119 PHTFPQLYPP-----VIAMGELTGNLEQCCVQLVLHQERQQKLQKKVIKALKYPVFVCIV 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMI 183
              +   +  LV                     LL ++A     G  ++ L+ 
Sbjct: 174 ALVVSTVMLVLVLPEFAQIYQSFDTPLPVLTATLLFMSAFLTAYGPYLIALLT 226



 Score = 37.4 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 41/134 (30%), Gaps = 7/134 (5%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVR 74
                  +  +  AGLP++  +   +   ++   +   R + +    G+ L  +I++   
Sbjct: 265 LSQIFQTLAITQHAGLPLTSGLDAALRSINNDTYQQALRSIQKQIKQGIPLHIAITQHPL 324

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           + P          +    +  G L   L  L+   + +    A      +E      I  
Sbjct: 325 FPP------LCQQMVRVGEESGALDVLLEKLAGWQQQQTQDLADNLTQMLEPLLMLIIGS 378

Query: 135 SLPFCVSTLVYFTS 148
            +   V  +     
Sbjct: 379 IVGVLVIAMYLPIF 392


>gi|332160427|ref|YP_004297004.1| type IV pilin biogenesis protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664657|gb|ADZ41301.1| type IV pilin biogenesis protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860122|emb|CBX70445.1| protein transport protein hofC [Yersinia enterocolitica W22703]
          Length = 399

 Score = 64.8 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 57/173 (32%), Gaps = 8/173 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
           +        +   ++AGLP+ + + ++  +    P +   + + +    G SLSE+++  
Sbjct: 59  ERLIAITRQLATLLQAGLPLVNCLQLLAQEIDALPWQCLLQEISQQVSQGQSLSEAMAHY 118

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P          +    +L GNL +    L      ++ ++ KV            +
Sbjct: 119 PHTFPQLYPP-----VIAMGELTGNLEQCCVQLVLHQERQQKLQKKVIKALKYPVFVCIV 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMI 183
              +   +  LV                     LL ++A     G  ++ L+ 
Sbjct: 174 ALVVSTVMLVLVLPEFAQIYQSFDTPLPVLTATLLFMSAFLTAYGPYLIALLT 226



 Score = 37.4 bits (85), Expect = 0.83,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 41/134 (30%), Gaps = 7/134 (5%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVR 74
                  +  +  AGLP++  +   +   ++   +   R + +    G+ L  +I++   
Sbjct: 265 LSQIFQTLAITQHAGLPLTAGLDAALRSINNDTYQQALRSIQKQIKQGIPLHIAITQHPL 324

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           + P          +    +  G L   L  L+   + +    A      +E      I  
Sbjct: 325 FPP------LCQQMVRVGEESGALDVLLEKLAGWQQQQTQDLADNLTQMLEPLLMLIIGS 378

Query: 135 SLPFCVSTLVYFTS 148
            +   V  +     
Sbjct: 379 IVGVLVIAMYLPIF 392


>gi|293391327|ref|ZP_06635661.1| Flp pilus assembly protein TadC [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951861|gb|EFE01980.1| Flp pilus assembly protein TadC [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 288

 Score = 64.8 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 69/157 (43%), Gaps = 4/157 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +  ++K +  K ++D    +D++  +++ G+ +  A+  +              ++    
Sbjct: 130 IGSILKSKIKKIMNDLAGFIDLVAVNLQTGMGIEAALKHVATDFKILNPDLTYVMLRIIR 189

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +     +S+++  +   +P  E+  F TV+      G ++   L  LS  +R+ + +  +
Sbjct: 190 KSEITGMSQALQDLSVSLPTAEIRMFCTVMQQSLNFGSSIYHQLVQLSTDIREIQLLAIE 249

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            +  ++ AK S  +I  + F +  L+   +PG M V 
Sbjct: 250 EKLGTLSAKMSVPLILFIMFPIIILI--LAPGVMRVF 284


>gi|262166739|ref|ZP_06034476.1| general secretion pathway protein F [Vibrio mimicus VM223]
 gi|262026455|gb|EEY45123.1| general secretion pathway protein F [Vibrio mimicus VM223]
          Length = 406

 Score = 64.8 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 57/172 (33%), Gaps = 8/172 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V++G+P+ + +  +  QS    +R+    V      G +LS+S+    
Sbjct: 67  DLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G+L   L  L+    +R+ M++K+Q   +         
Sbjct: 127 -----HVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183
             +   +   V     G    +          LL  +      GI ++  ++
Sbjct: 182 VGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQNWGIWLLIGLM 233


>gi|189424344|ref|YP_001951521.1| general secretion pathway protein F [Geobacter lovleyi SZ]
 gi|189420603|gb|ACD95001.1| general secretion pathway protein F [Geobacter lovleyi SZ]
          Length = 403

 Score = 64.8 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 52/164 (31%), Gaps = 9/164 (5%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66
           R A  +         +     A +P+ +A+  +  Q     +RS   R+      G  L+
Sbjct: 58  RKAVSVASLALFTRRLSTLTAAAVPIHEALEALHRQEKTGELRSILSRLRSRLAEGSPLA 117

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++S   +             +    + GG L + L  L+  L  ++ M+  V       
Sbjct: 118 RAMSSEPKVFG-----ESYIAMVAAGEAGGALDKVLQRLADFLERQEEMRRSVSTALAYP 172

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
              A +       +  L+ F  P    +  +       L VA  
Sbjct: 173 GLMAVVGSG---VMLFLLTFVVPKITGIFADTKATLPFLTVALL 213


>gi|114321229|ref|YP_742912.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227623|gb|ABI57422.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 417

 Score = 64.8 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 16/168 (9%), Positives = 48/168 (28%), Gaps = 6/168 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +++G+P+  A+ ++        +R     +      G +L  ++ + 
Sbjct: 78  ADIAYFSRQLATMLQSGVPLVQALDIVGKGDEHAGMRQLVAEIKNDVESGTALHTALQKH 137

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R             +    +  G L   L  ++      +++K K++       A   +
Sbjct: 138 PR-----YFDDLFVSLVAAGESAGVLDTLLDKIATYKEKTESIKGKIKKALFYPTAVIVV 192

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
              +   +   V             D      + +  +  +     + 
Sbjct: 193 AIVVTAILLIWVVPQFESLFRGFGADLPLFTQMVINLSDFMQSYWFIM 240


>gi|161523241|ref|YP_001578253.1| general secretion pathway protein F [Burkholderia multivorans ATCC
           17616]
 gi|189348902|ref|YP_001944530.1| general secretion pathway protein F [Burkholderia multivorans ATCC
           17616]
 gi|221202226|ref|ZP_03575261.1| general secretion pathway protein F [Burkholderia multivorans
           CGD2M]
 gi|221208713|ref|ZP_03581712.1| general secretion pathway protein F [Burkholderia multivorans CGD2]
 gi|221214338|ref|ZP_03587310.1| general secretion pathway protein F [Burkholderia multivorans CGD1]
 gi|160340670|gb|ABX13756.1| general secretion pathway protein F [Burkholderia multivorans ATCC
           17616]
 gi|189332924|dbj|BAG41994.1| general secretion pathway protein F [Burkholderia multivorans ATCC
           17616]
 gi|221165993|gb|EED98467.1| general secretion pathway protein F [Burkholderia multivorans CGD1]
 gi|221171345|gb|EEE03793.1| general secretion pathway protein F [Burkholderia multivorans CGD2]
 gi|221178020|gb|EEE10432.1| general secretion pathway protein F [Burkholderia multivorans
           CGD2M]
          Length = 405

 Score = 64.8 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 59/184 (32%), Gaps = 12/184 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +   + +R              +   + AGLP+ +A+ V+  QS  D +R     +    
Sbjct: 59  LGRKLSQREQAI------LTRQLASLLIAGLPLDEALGVLTEQSERDYIRELMAAIRAEV 112

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G SL+ ++S+  R     +       +    +  G L   L+ L+  +  R  +K K+
Sbjct: 113 LGGHSLANALSQHPR-----DFPEIYRALVSAGEHTGKLGIVLSRLADYIEQRNALKQKI 167

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
                       I   +   + + V                   ++ +A +  +      
Sbjct: 168 LLAFTYPAIVTVIAFGIVTFLLSYVVPQVVNVFASTKQQLPLLTIVMMALSGFVRHWWWA 227

Query: 180 RLMI 183
            L+ 
Sbjct: 228 ILIA 231



 Score = 34.7 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       S+          I     G +LS +++ +  + P
Sbjct: 274 FASTLGILTAAGVPILRALQAAGETLSNRAMRANIDDAIVRVREGSALSRALNNVKTFPP 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G+++  L   +         +       +E      + G + 
Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAADGEARELERRTMFLTSLLEPLLILAMGGIVL 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 VIVLAVMLPI 397


>gi|238750902|ref|ZP_04612399.1| Type II secretion system protein [Yersinia rohdei ATCC 43380]
 gi|238710816|gb|EEQ03037.1| Type II secretion system protein [Yersinia rohdei ATCC 43380]
          Length = 265

 Score = 64.8 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 66/159 (41%), Gaps = 4/159 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +K+++ KRT   L   P  +DI    V++G+ +  A+     +           +I+   
Sbjct: 105 IKNILYKRTESVLKSLPFFIDITAACVQSGMTIDGALNYTAKKFKLINPDLSLIMIKMSK 164

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +     L  +I  + +     E+  F + +      G ++ + LA LS+ +R+ + + ++
Sbjct: 165 RAEINGLELAIKELHQCSTAMEIRMFCSALQYSISFGSSIYDQLAKLSQEMREMQLLVSE 224

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
            +   +  K +  +   +      LV   SP  + +L +
Sbjct: 225 EKVSKLSTKLTFPLFIFILIPFIVLV--ISPSVLELLTH 261


>gi|120555593|ref|YP_959944.1| type II secretion system protein [Marinobacter aquaeolei VT8]
 gi|120325442|gb|ABM19757.1| type II secretion system protein [Marinobacter aquaeolei VT8]
          Length = 406

 Score = 64.8 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/171 (10%), Positives = 47/171 (27%), Gaps = 6/171 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           D       +   ++AG+P+  +  ++     +    E    I       S          
Sbjct: 67  DIAMLTRQLATMMKAGVPLVQSFDIVADGLENKGLQELVMTIRNDISSGS----GFASSL 122

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
               +        +    +  G L + L  ++  L   + +K KV+       A   +  
Sbjct: 123 RKHPKYFDDLYCNLVDSGEKAGALEQMLDRIATYLEKTEILKKKVKKAMTYPIAVVVVAI 182

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMI 183
            +   +   V             D       ++ ++        +V+  ++
Sbjct: 183 VVTAILLVKVVPQFESLFQGFGADLPVFTQFIIRISEWMQSWWFVVLLGIV 233



 Score = 37.0 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/128 (11%), Positives = 40/128 (31%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
            ++  +  AG+P+ DA+  + G + + V           ++   +S              
Sbjct: 277 RVLSTTFAAGVPLVDALDSVAGATGNAVYR-----DAVMNIKNDVSSGTQLQASMRQQGV 331

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
               +  ++   +  GNL + L+ ++       +         ME    A +   +   +
Sbjct: 332 FPVMAVQLTAIGEESGNLDDMLSKVAEHYEGVVDDMVDNLTALMEPMIMAVLGVLVGGLI 391

Query: 141 STLVYFTS 148
             +     
Sbjct: 392 IGMYLPIF 399


>gi|56459482|ref|YP_154763.1| Type II secretory pathway [Idiomarina loihiensis L2TR]
 gi|56178492|gb|AAV81214.1| Type II secretory pathway [Idiomarina loihiensis L2TR]
          Length = 412

 Score = 64.8 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/170 (13%), Positives = 54/170 (31%), Gaps = 6/170 (3%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSE 67
               LD+       +    +AG+P+  A+  +   + +  +R   + V E    G +LS 
Sbjct: 66  QKVSLDELIIFCRQMYSLTQAGIPMLRAIEGLADTTQNKRLRKTLQDVHEQLERGRNLSS 125

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +                   I    +  G L E+   LS  L   ++ + +++A +    
Sbjct: 126 A-----MSHHRGVFPRLVIAIVHVGENTGQLEESFQQLSVYLEKEQDTRKRIKAATRYPS 180

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
                +    F ++  V  T     +    +        + ++   +   
Sbjct: 181 FVLIALVIAMFVLNIFVIPTFASMFSRFNVELPWATRALLGSSEFFVAYW 230



 Score = 40.9 bits (94), Expect = 0.074,   Method: Composition-based stats.
 Identities = 15/136 (11%), Positives = 40/136 (29%), Gaps = 5/136 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
                          + AG+P++ A++++     +    +          G+   E++SR
Sbjct: 272 MRSMLGRFARSFSVMIGAGVPLTQALSLVAEAVDNAWMEKRII---EMRRGIERGENLSR 328

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           + R   L   +     +    +  G +   L  ++       +   K     +E    A 
Sbjct: 329 VARQSGL--FTPLILQMISVGEETGRVDVLLLEVAEYYERETDYDLKTLTARIEPLMIAV 386

Query: 132 IIGSLPFCVSTLVYFT 147
           +   +      +    
Sbjct: 387 VAVMVLILALGIFTPM 402


>gi|284050859|ref|ZP_06381069.1| type II secretion system protein [Arthrospira platensis str.
           Paraca]
 gi|291567073|dbj|BAI89345.1| pilin biogenesis protein [Arthrospira platensis NIES-39]
          Length = 377

 Score = 64.8 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 57/164 (34%), Gaps = 6/164 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
            D             AG+ ++  ++V+  Q  +  ++     +      G  LS S+ + 
Sbjct: 35  KDLAIFARQFAAMFNAGISMARCLSVLGEQCENAKLKRAINTLRADVEEGEELSLSMRKF 94

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    + GG L E L  L+ ++      ++++++ +   K   +I
Sbjct: 95  PD-----VFDQLFVSMVWAGETGGVLDETLERLAVMMEKNHKTQSEIKSATSYPKTVLFI 149

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
             ++ F ++T +  T  G    +  +     ++ +  +      
Sbjct: 150 AIAVFFGMATFLLPTFSGIFEQIGVELPLFTVMMLKISAFCTTW 193


>gi|318080885|ref|ZP_07988217.1| type II secretion system F protein [Streptomyces sp. SA3_actF]
          Length = 219

 Score = 64.8 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 62/166 (37%), Gaps = 1/166 (0%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
              ++   VRAG   ++A+A  V  +   +      ++     G  +  ++ +  R    
Sbjct: 45  LCGLLAGEVRAGSGPAEALAHAVN-ACGELGPARADILAAARFGGDVPAALRQAARVPGA 103

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           + +   +    V    G  L+  L  L R L   ++ +A + A    A+A+A ++ +LP 
Sbjct: 104 EGLVGLAACWRVALDRGAGLAVGLERLERALLADRDQRADLLAQLSGARATAGLLAALPL 163

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
               L        + VL     G + L + +     G+     ++ 
Sbjct: 164 LGLLLGSAVGAAPLRVLFGSAPGFVCLVIGSGLEAAGVWWCLWLVR 209


>gi|258624629|ref|ZP_05719565.1| General secretion pathway protein F [Vibrio mimicus VM603]
 gi|258583093|gb|EEW07906.1| General secretion pathway protein F [Vibrio mimicus VM603]
          Length = 406

 Score = 64.8 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 57/172 (33%), Gaps = 8/172 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V++G+P+ + +  +  QS    +R+    V      G +LS+S+    
Sbjct: 67  DLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G+L   L  L+    +R+ M++K+Q   +         
Sbjct: 127 -----HVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183
             +   +   V     G    +          LL  +      GI ++  ++
Sbjct: 182 VGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQNWGIWLLIGLM 233


>gi|197118970|ref|YP_002139397.1| type IV pilus biogenesis protein PilC [Geobacter bemidjiensis Bem]
 gi|197088330|gb|ACH39601.1| type IV pilus biogenesis protein PilC [Geobacter bemidjiensis Bem]
          Length = 407

 Score = 64.8 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 61/178 (34%), Gaps = 9/178 (5%)

Query: 10  AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSE 67
            K    D           + +GLP+   + ++ GQ  +    E   +V E+   G + ++
Sbjct: 61  KKIETKDLVVFTRQFATMIDSGLPLVQCLDILSGQQENKTFKEILVKVKESVESGSTFAD 120

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++++  +             +    ++GG L   LA L+  +     +K +V+   +   
Sbjct: 121 ALAKHPKA-----FDQLYVNLVAAGEVGGILDTILARLAAYIEKAMKLKKQVKGAMVYPI 175

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
               I   +   +   V  T          +      + +A +  L   +V+  +I  
Sbjct: 176 TIMSIAVVVVGVILVFVIPTFAKMFADFGGELPMPTKIVIAMSNFLTKYLVV--IIAI 231



 Score = 38.9 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 11/130 (8%), Positives = 34/130 (26%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+P+ D + ++   + + +  E    +                    P 
Sbjct: 274 FTRTLGTMISSGVPIMDGLEIVAKTAGNKIVEEAIYKVRQSISEGKTIAEPLAESGVFPP 333

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G +   L  ++    D  +         ME     ++  ++  
Sbjct: 334 -----MVVQMISVGEATGAMDAMLNKIADFYDDEVDDAVGAMTSMMEPLLMVFLGTTVGG 388

Query: 139 CVSTLVYFTS 148
            V  +     
Sbjct: 389 LVVAMYLPIF 398


>gi|258620395|ref|ZP_05715433.1| General secretion pathway protein F [Vibrio mimicus VM573]
 gi|258587274|gb|EEW11985.1| General secretion pathway protein F [Vibrio mimicus VM573]
          Length = 406

 Score = 64.8 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 57/172 (33%), Gaps = 8/172 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V++G+P+ + +  +  QS    +R+    V      G +LS+S+    
Sbjct: 67  DLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G+L   L  L+    +R+ M++K+Q   +         
Sbjct: 127 -----HVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183
             +   +   V     G    +          LL  +      GI ++  ++
Sbjct: 182 VGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQNWGIWLLIGLM 233


>gi|284029668|ref|YP_003379599.1| type II secretion system protein [Kribbella flavida DSM 17836]
 gi|283808961|gb|ADB30800.1| type II secretion system protein [Kribbella flavida DSM 17836]
          Length = 312

 Score = 64.8 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 63/154 (40%), Gaps = 2/154 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   ++KR  + L + P   +++  SV AG   + A+  +       +  E +RV+    
Sbjct: 156 LTGQVRKRERRLLAELPTVAELLALSVAAGEGPAAALDRVARSCRGELADELQRVLAETR 215

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL  ++  +     L  +S F+  ++V  + G  L++ L   +  +R+    + ++ 
Sbjct: 216 AGSSLVRALDGLADRTGLVALSRFADGLAVALERGTPLADVLRAQAGDIRE--ASRRELI 273

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
                 + +  +         T+ +   PG + +
Sbjct: 274 ESGARREVAMMVPVVFLVLPVTIAFAFYPGAVGI 307


>gi|262273800|ref|ZP_06051613.1| type 4 fimbrial assembly protein PilC [Grimontia hollisae CIP
           101886]
 gi|262222215|gb|EEY73527.1| type 4 fimbrial assembly protein PilC [Grimontia hollisae CIP
           101886]
          Length = 407

 Score = 64.8 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 63/181 (34%), Gaps = 8/181 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGL 63
           ++++ A    D       +   + AG+P+ + + ++        ++    ++      G 
Sbjct: 58  VRRKNAANAKDITLFSRQMATMLEAGVPLGETLRLLKASAKKAEMKFILGQIYSHIEAGS 117

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           SL++++              F   +    +  G+L +  A +       +  +AKV    
Sbjct: 118 SLAQAMKTSS-----PLFDQFYCDLVATGEQTGHLEQIFARICVYREKSEETRAKVIKAM 172

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRL 181
           +      ++   +   +   V  T     +    +       +LG++ A  L GI ++  
Sbjct: 173 IYPSIVCFLAILVTVGMLIFVIPTFKDVFSSFGAELPWFTRKVLGISDAIQLYGIYMLLA 232

Query: 182 M 182
           +
Sbjct: 233 L 233



 Score = 36.6 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/131 (9%), Positives = 40/131 (30%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +  +  AG+P+ + ++     +++   +     V +    G  L  +I    ++  
Sbjct: 276 FTRTLATTFSAGIPLLNGLSAAGKTANNTHYQRVIEEVHKQTSGGRPLHRAIKETGQFPD 335

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         + +  +  G L + L  ++ I     +         +E      +   + 
Sbjct: 336 M------MIQMVMIGEESGALDDMLNKVAGIYEADVDNTVDNLGKILEPMIIVVLGVLIG 389

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 390 SLVVAMYLPMF 400


>gi|157960241|ref|YP_001500275.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
 gi|157845241|gb|ABV85740.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
          Length = 422

 Score = 64.8 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 18/171 (10%), Positives = 49/171 (28%), Gaps = 8/171 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMV 73
           D       I   + AG+P+   + ++          E    ++     G+ LS+++    
Sbjct: 82  DIAMVTRQIATMLAAGVPLVTTIELLGRGHEKAKMRELLATILAEIQSGIPLSDALR--- 138

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                Q        +    +  G+L      ++      + +K+K++       A   + 
Sbjct: 139 --PHRQYFDDLYVDLVAAGEHSGSLDTVFDRIATYREKSEALKSKIKKAMFYPAAVVIVA 196

Query: 134 GSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVMRLM 182
             +   +   V             +  P    +L ++          +  +
Sbjct: 197 ILVTSLLLLFVVPQFEEIFKGFGAELPPFTQFVLKISRGLEHSWYFFVLAI 247


>gi|56752033|ref|YP_172734.1| type IV pilus assembly protein PilC [Synechococcus elongatus PCC
           6301]
 gi|56686992|dbj|BAD80214.1| type IV pilus assembly protein PilC [Synechococcus elongatus PCC
           6301]
          Length = 410

 Score = 64.8 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 58/149 (38%), Gaps = 6/149 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   V AG+P+  A+ ++  Q+ +  +R   +++      GL+LS+S+ + 
Sbjct: 68  KDMALFSRQLSSLVDAGVPIVRALGLLTEQTRNPKLRKTLKQINIDVQEGLNLSDSMRKF 127

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +             +    + GG L + L  LS++L D   ++ ++++      A    
Sbjct: 128 PK-----VFDGLYVAMIQAGETGGVLDDVLNRLSKLLEDMSRLRNQMKSAMTYPMAVFVT 182

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
              +   ++  +  T  G       +  G
Sbjct: 183 AILVFLGMTIFIIPTFAGIFEDQGAELPG 211



 Score = 40.1 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/133 (10%), Positives = 36/133 (27%), Gaps = 5/133 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
                    RAG+P+  A+ ++   + +   +        +     +        R  PL
Sbjct: 278 FCRTFGSLTRAGVPIMTALEIVRDTAGNQAIARSIDAARMEVQTGGMMSVALSRYRVFPL 337

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                 +  +    +  G L   +  ++    D      K     +E      + G +  
Sbjct: 338 -----MALSMITIGEETGELDTMVNKVADFYEDEVEQAVKGLTSLLEPIMIVLVGGIVGS 392

Query: 139 CVSTLVYFTSPGY 151
            +  +       +
Sbjct: 393 ILLAMYLPMFSIF 405


>gi|309810746|ref|ZP_07704553.1| type II secretion system F domain protein [Dermacoccus sp.
           Ellin185]
 gi|308435283|gb|EFP59108.1| type II secretion system F domain protein [Dermacoccus sp.
           Ellin185]
          Length = 295

 Score = 64.8 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 61/146 (41%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L ++R A+ + +FP   D++  +V AG     A+  +      P+  E R  +E   
Sbjct: 140 LTRLAERREARMIVEFPAIADMLALAVAAGQGPLGALEHVTTLCRGPLAEELRTALEQAR 199

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  LS++++ + R   +  V+ F   + V  + G  L++ L   ++  R+    +   +
Sbjct: 200 AGTPLSDALAGVARRTSVVSVARFVEGVIVALERGTPLADVLRAQAQDARESVRTELVEK 259

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146
           A   E    A ++  +         +
Sbjct: 260 AGRKEVVMMAPVVFLVLPVTVLFAVY 285


>gi|117928527|ref|YP_873078.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
 gi|117648990|gb|ABK53092.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
          Length = 409

 Score = 64.8 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 58/187 (31%), Gaps = 18/187 (9%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISR 71
           + D           + +GL +  A+ ++  Q+ S  ++     V      G SLS ++S+
Sbjct: 65  MKDLAVMSRQFATMINSGLSLLRALTILREQTQSKALQKVLTEVRNDVETGSSLSAAMSK 124

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             R  P          +    ++GG L   L  ++        +++KV++          
Sbjct: 125 HPRAFPP-----LMVNMIRAGEVGGFLDSVLLEIAANYEAEVKLRSKVKSAMTYPVVVLC 179

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRG------------HMLLGVAAAFMLIGIMVM 179
           I       + T V          L                   +LL V     ++G +  
Sbjct: 180 ISLLAVLGMLTFVVPVFAKMFKQLGGKLPAPTQFLVTLSHSMKVLLPVLIVLAIVGGITW 239

Query: 180 RLMINFD 186
             +   +
Sbjct: 240 SRIRRTE 246



 Score = 42.4 bits (98), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/134 (9%), Positives = 36/134 (26%), Gaps = 5/134 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                   +   + +G+P+  A+ ++   + + V          + +  S+    S    
Sbjct: 270 ALARFARNLGTMMHSGVPILQALDIVADTTGNVV-----LARAIRDVQGSIRSGESLTAP 324

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                        +    +  G L   L  +++          +     +E    A + G
Sbjct: 325 LTSHPIFPPMVVQMMAVGEDTGALDTMLGKIAQFYDQEVEAMTESLTALIEPIMIALLGG 384

Query: 135 SLPFCVSTLVYFTS 148
            +   +  L     
Sbjct: 385 IVGSMIVALYLPIF 398


>gi|295700365|ref|YP_003608258.1| type II secretion system F domain protein [Burkholderia sp.
           CCGE1002]
 gi|295439578|gb|ADG18747.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1002]
          Length = 322

 Score = 64.8 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 68/165 (41%), Gaps = 4/165 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +      R    ++DFP+ALD++   V AGL +  ++  +  +    S  V SE   ++ 
Sbjct: 156 LSRRTAARQRSLVEDFPDALDLLTVCVEAGLGLDASLMKVGEEIRLRSAVVASELELMLL 215

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S  +++        ++++  FS ++    + G ++  +L  LS  LR R+ M+A
Sbjct: 216 EMRSGFSKEKALRNFSLRTGVEDIDSFSAMLIQAERFGTSIGASLRVLSDTLRTRRRMRA 275

Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           + +A  +        +    P  +  L+          L+    G
Sbjct: 276 EERAAKIALKLLFPLMFCIFPALLVVLMGPAMIHIYRDLLPSMAG 320


>gi|77459395|ref|YP_348902.1| general secretion pathway protein F [Pseudomonas fluorescens Pf0-1]
 gi|77383398|gb|ABA74911.1| general secretion pathway protein F [Pseudomonas fluorescens Pf0-1]
          Length = 403

 Score = 64.8 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 60/168 (35%), Gaps = 6/168 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
            +D   A   +   + A LP+  A++  V Q+    +      V      G+ L+E+++ 
Sbjct: 63  DNDLAWATRQLSSLLGASLPLEAALSATVEQAEKKHIAHTLSAVRADVRSGMRLAEALAA 122

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             R     +       +    +  G+L++ +  L+  + +R N++ K+    +       
Sbjct: 123 RPR-----DFPEIYRALIAAGEESGDLAQVMERLADYIEERNNLRGKILTAFIYPGVVGL 177

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   + + V        +    D  G  L  + A+  +     +
Sbjct: 178 VSIGIVIFLLSYVVPQVVSAFSQARQDLPGLTLAMLNASDFIRAWGWL 225



 Score = 36.6 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/129 (11%), Positives = 33/129 (25%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+  A+       S+   S              + E ++        
Sbjct: 272 FASTLAILGGAGVPLLRALEAARQTLSNDRLSLSV-----NEATAKVREGVNLAAALKVE 326

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G L   L   ++ L      +A      +E      + G +  
Sbjct: 327 NVFPPVLIHLIASGEKTGALPPMLERAAQTLSRDIERRAMGMTALLEPLMIVVMGGVVLV 386

Query: 139 CVSTLVYFT 147
            V  ++   
Sbjct: 387 IVMAVLLPI 395


>gi|330444857|ref|ZP_08308512.1| general secretion pathway protein F [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489167|dbj|GAA03009.1| general secretion pathway protein F [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 408

 Score = 64.8 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 58/167 (34%), Gaps = 11/167 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
            ++       +   V+A +P+ + +  +  Q+    +++    V      G +L++S++ 
Sbjct: 67  TNELALITRQLATLVQASMPLEECLKAVAEQNEKPRLKNILLAVRSRVVEGYTLADSMAE 126

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    +  G+L   L  L+    +R+ M++K+Q   +       
Sbjct: 127 FP-----HIFDQLFRAMVAAGEKSGHLDTILNRLADYTENRQQMRSKLQQAMIYPI---M 178

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +       V+ L+    P  ++  +    G  L  +    +     V
Sbjct: 179 LTLVAVSVVAFLLATVVPKIVDQFVQ--MGQQLPTITEVLLAASNFV 223


>gi|291438159|ref|ZP_06577549.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
 gi|291341054|gb|EFE68010.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
          Length = 324

 Score = 64.8 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 2/162 (1%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   VRAG     A+   V   S  +      V+     G  + E+++   +    + + 
Sbjct: 158 LAGEVRAGRQPGAALLTAVRD-SGGLGDAQAAVLAAARFGGDVPEALAAAAQP-GAEGLR 215

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
             +    V    G  L++ L  L   LR  ++ +A ++A    A+A+A ++  LP     
Sbjct: 216 GLAACWRVAVDQGAGLADGLDRLEAALRAERDRRADLRAQLAGARATAVMLAGLPAVGLA 275

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           L        + +L++ P G   L V      +G+     ++ 
Sbjct: 276 LGAALGADPLRILLHTPSGLGCLAVGGVLEGLGLWWALRIMR 317


>gi|291543482|emb|CBL16591.1| Type II secretory pathway, component PulF [Ruminococcus sp. 18P13]
          Length = 396

 Score = 64.4 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 54/189 (28%), Gaps = 20/189 (10%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISR 71
             +       +   + +GL +  A+ ++  +         +R + E    G S S     
Sbjct: 57  TKELAFNCRQMAAMLTSGLTLVKALDILCREQEKEASKLIWRDIYENVQKGESFS----- 111

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
               M       F   +    +  G+L + +  +S        M   +++  M       
Sbjct: 112 ASLEMHSGSFPQFLISMVAAGESSGSLDQIMQRMSDHYAKENKMHNTIKSAMMYPIILVI 171

Query: 132 IIGSLPFCVSTLVYFTS----------PGYMNVLINDPRG----HMLLGVAAAFMLIGIM 177
           +  ++   + T +  T           P    V+++          +L       + GI 
Sbjct: 172 LCVAVVIGLFTFIMPTFAGLFTNEEDMPALTRVMMSISNFLRGYWYILIGFVLIAVFGIR 231

Query: 178 VMRLMINFD 186
               M N  
Sbjct: 232 YAMKMPNVR 240


>gi|225076115|ref|ZP_03719314.1| hypothetical protein NEIFLAOT_01147 [Neisseria flavescens
           NRL30031/H210]
 gi|224952559|gb|EEG33768.1| hypothetical protein NEIFLAOT_01147 [Neisseria flavescens
           NRL30031/H210]
          Length = 177

 Score = 64.4 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 45/124 (36%), Gaps = 7/124 (5%)

Query: 1   MKHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIET 58
           +  +   R  +   +D       +   ++AGLP+  A  ++    S+  +     ++   
Sbjct: 59  ISKVKTARKRRITQEDITVFTRQLATMMKAGLPLMQAFEIVARGHSNPSMTEMLTQIRSD 118

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G +L +S S+  +         F   +    + GG L   L  L+      + +K K
Sbjct: 119 VEQGSALGKSFSKYPK-----YFDRFYCNLVSAGESGGVLESLLDKLAVYKEKTQAIKKK 173

Query: 119 VQAL 122
           ++  
Sbjct: 174 LKPH 177


>gi|53719426|ref|YP_108412.1| putative fimbriae-related membrane protein [Burkholderia
           pseudomallei K96243]
 gi|76810064|ref|YP_333441.1| putative fimbriae-related membrane protein [Burkholderia
           pseudomallei 1710b]
 gi|121598751|ref|YP_993001.1| type II secretion system protein F [Burkholderia mallei SAVP1]
 gi|124385777|ref|YP_001026333.1| type II secretion system protein F [Burkholderia mallei NCTC 10229]
 gi|126450336|ref|YP_001080393.1| type II secretion system protein F [Burkholderia mallei NCTC 10247]
 gi|134282407|ref|ZP_01769112.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei 305]
 gi|217421557|ref|ZP_03453061.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei 576]
 gi|226196355|ref|ZP_03791937.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|237812170|ref|YP_002896621.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei MSHR346]
 gi|254177530|ref|ZP_04884185.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
 gi|254188724|ref|ZP_04895235.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254259567|ref|ZP_04950621.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei 1710a]
 gi|254297711|ref|ZP_04965164.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei 406e]
 gi|254358538|ref|ZP_04974811.1| type II secretion system protein [Burkholderia mallei 2002721280]
 gi|52209840|emb|CAH35812.1| putative fimbriae-related membrane protein [Burkholderia
           pseudomallei K96243]
 gi|76579517|gb|ABA48992.1| putative fimbriae-related membrane protein [Burkholderia
           pseudomallei 1710b]
 gi|121227561|gb|ABM50079.1| bacterial type II secretion system protein F domain [Burkholderia
           mallei SAVP1]
 gi|126243206|gb|ABO06299.1| bacterial type II secretion system F domain protein [Burkholderia
           mallei NCTC 10247]
 gi|134246445|gb|EBA46534.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei 305]
 gi|148027665|gb|EDK85686.1| type II secretion system protein [Burkholderia mallei 2002721280]
 gi|157807239|gb|EDO84409.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei 406e]
 gi|157936403|gb|EDO92073.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160698569|gb|EDP88539.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
 gi|217395299|gb|EEC35317.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei 576]
 gi|225931572|gb|EEH27577.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|237503370|gb|ACQ95688.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei MSHR346]
 gi|254218256|gb|EET07640.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei 1710a]
          Length = 314

 Score = 64.4 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  ++ +R        P+ALD++V    AG  ++ A+  +  +      P+  EF    +
Sbjct: 154 LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G   + +++ M   + L  +    T +    Q G  ++++L  LSR  R  + +  
Sbjct: 214 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 273

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K +  ++  +   V+ +
Sbjct: 274 EEKAAKLAPKMTLPMMLFVMPTVALI 299


>gi|152990756|ref|YP_001356478.1| general secretory pathway protein F [Nitratiruptor sp. SB155-2]
 gi|151422617|dbj|BAF70121.1| general secretory pathway protein F [Nitratiruptor sp. SB155-2]
          Length = 412

 Score = 64.4 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 71/193 (36%), Gaps = 19/193 (9%)

Query: 2   KHLIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59
           + L+++R  K   +    A+  +     AG+ + DA+  +  Q++D  ++  F  V    
Sbjct: 58  RFLMEQRKGKINREGLIAAIRQLAVMTNAGISLYDALMEVATQTNDAKLKQIFLDVANGI 117

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           + G+S SE++ +        E+      ++   +  G+++ AL  L+ IL        K 
Sbjct: 118 NSGISFSEALKQ-----YQNELGSLVITMATLGEKTGDMAHALFTLASILEQINENIKKF 172

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLL----------GV 167
           +            +      V + V        +    +      +LL            
Sbjct: 173 KKAVRYPIIVLSAMAIAFVIVISYVVPKFKSIFDKFHAELPLPTKILLSLEHLFNTYGLY 232

Query: 168 AAAFMLIGIMVMR 180
            A  + IGI+++R
Sbjct: 233 VAGGLFIGILLIR 245


>gi|310765051|gb|ADP10001.1| type IV pilin biogenesis protein [Erwinia sp. Ejp617]
          Length = 399

 Score = 64.4 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/144 (11%), Positives = 43/144 (29%), Gaps = 6/144 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            L  +   ++AG+P+   + ++     +   ++    + +    G   S+++       P
Sbjct: 64  FLRQLATLLKAGMPLPACLQLLADGHPEAGWQALLTHLHQRISAGEPFSQALREWPDIFP 123

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +L G L E    L+     ++ ++ KVQ           +   + 
Sbjct: 124 PLIP-----ALVHIGELTGELDECCLQLAIQQEKQQLLRQKVQKALRYPLFIMAVALLVS 178

Query: 138 FCVSTLVYFTSPGYMNVLINDPRG 161
             +   V                G
Sbjct: 179 IGMLVFVLPEFVAIYRSFNAPLPG 202



 Score = 40.9 bits (94), Expect = 0.079,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 7/135 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLSESISRMV 73
                   +  + RAGL +  ++  I    S  +  E    ++     G  L +++    
Sbjct: 264 QLSQIFTTLSLTQRAGLTLLHSLQAIEQTLSPLLWREAVSQLQQHIAAGYPLHQALKSHP 323

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
            + P          +    +  G+L   L  L+     + +  A   A ++E      I 
Sbjct: 324 LFTP------LCYQLVKVGEESGSLDTLLVRLAVWHEQQTHQLADTLAAALEPLMMIVIG 377

Query: 134 GSLPFCVSTLVYFTS 148
           G +   V  +     
Sbjct: 378 GIVGTLVVAMYLPVF 392


>gi|302520916|ref|ZP_07273258.1| integral membrane protein [Streptomyces sp. SPB78]
 gi|302429811|gb|EFL01627.1| integral membrane protein [Streptomyces sp. SPB78]
          Length = 255

 Score = 64.4 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 62/166 (37%), Gaps = 1/166 (0%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
              ++   VRAG   ++A+A  V  +   +      ++     G  +  ++ +  R    
Sbjct: 81  LCGLLAGEVRAGSGPAEALAHAVN-ACGELGPARADILAAARFGGDVPAALRQASRVPGA 139

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           + +   +    V    G  L+  L  L R L   ++ +A + A    A+A+A ++ +LP 
Sbjct: 140 EGLVGLAACWHVALDRGAGLAVGLERLERALLADRDQRADLLAQLSGARATAGLLAALPL 199

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
               L        + VL     G + L + +     G+     ++ 
Sbjct: 200 LGLLLGSAVGAAPLRVLFGSAPGFVCLVIGSGLEAAGVWWCLWLVR 245


>gi|313497009|gb|ADR58375.1| PilC [Pseudomonas putida BIRD-1]
          Length = 422

 Score = 64.4 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 53/171 (30%), Gaps = 11/171 (6%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSL 65
           KR  K   D       +   ++AG+P+  A  V+          +   R+ +    GL L
Sbjct: 78  KRREK--ADPAGFSRQLATLLKAGVPLLQAFEVMGRSGCDAAQAALLERLKQDVASGLGL 135

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           ++++ R                +    +  G L   L  L+ +L  R+ +  KV+   + 
Sbjct: 136 ADALQRHPA-----WFDALYCNLVRVGEQSGTLDRQLEQLAGMLEQRRVLHKKVRKAMIY 190

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
                          + L+    P + ++                 +  G+
Sbjct: 191 PLLLLLTGLG---VSAILLLEVIPKFESMFSGMGAALPAFTQWVINLSTGL 238



 Score = 38.9 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/137 (10%), Positives = 42/137 (30%), Gaps = 7/137 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISR 71
                     +  S  AG+P+ DA+  +   +   +      R+ +    G  L+++++ 
Sbjct: 286 QAALARFARSLATSYGAGVPLLDALGTVARVTGGDLHEQAVLRLRQGMANGQGLNQAMAG 345

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              + P          ++   +  G L + L   +    ++ +         +E      
Sbjct: 346 EPLFPP------LLVQLTAIGESSGTLDQMLEKAASHYEEQVSQALDQLTSLLEPAIVLI 399

Query: 132 IIGSLPFCVSTLVYFTS 148
           +   +   V  +     
Sbjct: 400 LGLLVGGLVVAMYLPIF 416


>gi|184200111|ref|YP_001854318.1| hypothetical protein KRH_04650 [Kocuria rhizophila DC2201]
 gi|183580341|dbj|BAG28812.1| hypothetical protein [Kocuria rhizophila DC2201]
          Length = 254

 Score = 64.4 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 67/194 (34%), Gaps = 17/194 (8%)

Query: 7   KRTAKFLDD--FPNALDIIVRSVRAGLPVSDAVAVI----VGQSSDPVRSEFRRVIETQH 60
           +R  +  +   +  A+  +   + AG   +   A I       ++  +    + V     
Sbjct: 52  RRRDRATEAMRWVTAVRRLAALLHAGRAPATVFAEITPGTADPTARWITRVCQEVHAAAL 111

Query: 61  LGLSLSESISRMVRYM-----------PLQEVSFFSTVISVQSQLGGNLSEALANLSRIL 109
           +G+ +S ++ +  R                  +  +    +  + G +L+  L+ ++  L
Sbjct: 112 VGIPVSTTLGQFARRPAAVGDRVLGATARSVCAQLAACWEISERSGSSLARTLSGVAESL 171

Query: 110 RDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
             R + +A  ++     + +   +  LP     L        ++ L+    G + L   A
Sbjct: 172 ESRLDAQAARESALAGPRVTVRTLSWLPVLALGLGVLMGTDPVSTLLTTVWGRIALAAGA 231

Query: 170 AFMLIGIMVMRLMI 183
              + G +  R ++
Sbjct: 232 GLSIAGRLWTRSLM 245


>gi|209525547|ref|ZP_03274086.1| type II secretion system protein [Arthrospira maxima CS-328]
 gi|209494046|gb|EDZ94362.1| type II secretion system protein [Arthrospira maxima CS-328]
          Length = 377

 Score = 64.4 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 57/164 (34%), Gaps = 6/164 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
            D             AG+ ++  ++V+  Q  +  ++     +      G  LS S+ + 
Sbjct: 35  KDLAIFARQFAAMFNAGISMARCLSVLGEQCENAKLKRAINTLRADVEEGEELSSSMRKF 94

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    + GG L E L  L+ ++      ++++++ +   K   +I
Sbjct: 95  PD-----VFDQLFVSMVSAGETGGVLDETLERLAVMMEKNHKTQSEIKSATSYPKTVLFI 149

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
             ++ F ++T +  T  G    +  +     ++ +  +      
Sbjct: 150 AIAVFFGMATFLLPTFSGIFEQIGVELPLFTVMMLKISDFCTTW 193


>gi|17229934|ref|NP_486482.1| pilin biogenesis protein [Nostoc sp. PCC 7120]
 gi|17131534|dbj|BAB74141.1| pilin biogenesis protein [Nostoc sp. PCC 7120]
          Length = 407

 Score = 64.4 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/172 (11%), Positives = 60/172 (34%), Gaps = 9/172 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   V AG+ +   + V+  Q ++  ++     +      G++LS+++ +      
Sbjct: 72  FSRQLATLVNAGVAIVRGLGVLGDQCTNAKLKQALNDISNDVQSGVNLSDAMRKHPGCFD 131

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    ++GG L E L  L+++L D   ++ ++++          +   + 
Sbjct: 132 G-----LYVSMIQAGEVGGVLDEVLNRLAKLLEDMARLQNQIKSALAYPVVVGILATGIF 186

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVA---AAFMLIGIMVMRLMINFD 186
             ++  +          L  +        +        L  ++++  ++ F 
Sbjct: 187 VGMTVFLIPIFAKIFVELGTELPPLTAFLMTCSQVLRSLWSLVIIAGIVGFK 238


>gi|333025387|ref|ZP_08453451.1| hypothetical protein STTU_2891 [Streptomyces sp. Tu6071]
 gi|332745239|gb|EGJ75680.1| hypothetical protein STTU_2891 [Streptomyces sp. Tu6071]
          Length = 275

 Score = 64.4 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 62/166 (37%), Gaps = 1/166 (0%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
              ++   VRAG   ++A+A  V  +   +      ++     G  +  ++ +  R    
Sbjct: 101 LCGLLAGEVRAGSGPAEALAHTVN-ACGELGPARADILAAARFGGDVPAALRQAARVPGA 159

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           + +   +    V    G  L+  L  L R L   ++ +A + A    A+A+A ++ +LP 
Sbjct: 160 EGLVGLAACWRVALDRGAGLAVGLERLERALLADRDQRADLLAQLSGARATAGLLAALPL 219

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
               L        + VL     G + L + +     G+     ++ 
Sbjct: 220 LGLLLGSAVGAAPLRVLFGSAPGFVCLVIGSGLEAAGVWWCLWLVR 265


>gi|332527682|ref|ZP_08403725.1| general secretion pathway protein F [Rubrivivax benzoatilyticus
           JA2]
 gi|332112082|gb|EGJ12058.1| general secretion pathway protein F [Rubrivivax benzoatilyticus
           JA2]
          Length = 405

 Score = 64.4 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 11/164 (6%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMVR 74
                  +   V +GLP+  A+  +  ++ D  + E    +    + G   + +++   R
Sbjct: 68  LAVWTRQLAGLVGSGLPLERALTALADEAEDQRQRELLVHLRSEVNAGSPFARALATAPR 127

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                E       +    +  G L   L  L++ L DR+ ++AK+    +       +  
Sbjct: 128 -----EFDEVYRAVVAAGEQSGALGAVLERLAQDLEDRQALRAKLLGAMLYPA---IVSL 179

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                V+ LV +  P    V  N  +   LL V    M I   V
Sbjct: 180 IALVIVTFLVTYVVPQVATVFSNTKQSLPLLTV--VMMAISDFV 221



 Score = 33.9 bits (76), Expect = 9.2,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 37/130 (28%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+        +          +     G  L+ +++   R+  
Sbjct: 274 FAGTLAMLAGAGVPILKALQAAAETLGNRAMRADALDALVQVREGAPLASALAAKKRFPG 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                    + +   +  G L   L   +  L      +A   A  +E      + G + 
Sbjct: 334 ------LLAMFARLGEQTGQLPVMLQRAATQLGAEVQRRAMAVATVLEPLLIVAMGGVVM 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 MIVLAVMLPI 397


>gi|262170338|ref|ZP_06038016.1| general secretion pathway protein F [Vibrio mimicus MB-451]
 gi|261891414|gb|EEY37400.1| general secretion pathway protein F [Vibrio mimicus MB-451]
          Length = 406

 Score = 64.4 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 57/172 (33%), Gaps = 8/172 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V++G+P+ + +  +  QS    +R+    V      G +LS+S+    
Sbjct: 67  DLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G+L   L  L+    +R+ M++K+Q   +         
Sbjct: 127 -----HVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183
             +   +   V     G    +          LL  +      GI ++  ++
Sbjct: 182 VGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQNWGIWLLIGLM 233


>gi|296130402|ref|YP_003637652.1| Type II secretion system F domain protein [Cellulomonas flavigena
           DSM 20109]
 gi|296022217|gb|ADG75453.1| Type II secretion system F domain protein [Cellulomonas flavigena
           DSM 20109]
          Length = 299

 Score = 64.4 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 57/149 (38%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             D P+ LD++  +V AG+    A+A +      P+  E    +     G S+ ++   +
Sbjct: 149 DRDLPDFLDVLAVTVMAGVNFRAALARVSQHFEGPLSEEIDLTLHQIANGASVRQAFQDL 208

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R    + V  F + +    +LG  L+E+L  ++  +R     + +  A     + +   
Sbjct: 209 RRRSASESVGQFVSALLQSQELGAPLAESLQRIAEDMRKASGQRQRQAAAKASPRVTLVT 268

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
              L       ++      ++V +    G
Sbjct: 269 SMVLVPGALVFIFVGMWLGLDVDLGTIFG 297


>gi|254251014|ref|ZP_04944332.1| Type II secretory pathway component PulF [Burkholderia dolosa
           AUO158]
 gi|124893623|gb|EAY67503.1| Type II secretory pathway component PulF [Burkholderia dolosa
           AUO158]
          Length = 405

 Score = 64.4 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 59/184 (32%), Gaps = 12/184 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +   + +R              +   + AGLP+ +A+ V+  QS  D +R     +    
Sbjct: 59  LGRKLSQREQAI------LTRQLASLLIAGLPLDEALGVLTEQSERDYIRELMASIRAEV 112

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G SL+ ++++  R     +       +    +  G L   L+ L+  +  R  +K K+
Sbjct: 113 LGGHSLANALTQHPR-----DFPEIYRALVSAGEHTGKLGIVLSRLADYIEQRNALKQKI 167

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
                       I   +   + + V                   ++ +A +  +      
Sbjct: 168 LLAFTYPAIVTVIAFGIVTFLLSYVVPQVVNVFASTKQQLPLLTIVMMALSGFVRHWWWA 227

Query: 180 RLMI 183
            L+ 
Sbjct: 228 LLIA 231



 Score = 34.7 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       S+          I     G +LS +++ +  + P
Sbjct: 274 FASTLGILTAAGVPILRALQAAGETLSNRAMRANIDDAIVRVREGSALSRALNNVKTFPP 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G+++  L   +         +       +E      + G + 
Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAADGEARELERRTMFLTSLLEPLLILAMGGIVL 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 VIVLAVMLPI 397


>gi|332995714|gb|AEF05769.1| general secretion pathway protein F [Alteromonas sp. SN2]
          Length = 408

 Score = 64.4 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/170 (13%), Positives = 58/170 (34%), Gaps = 6/170 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V + LPV +A+  +  Q      ++    V      G  L++++S   
Sbjct: 69  DLALLTRQMATLVESALPVEEALLAVAEQCEKPRQKNMMMAVRSKVVEGHGLADALSEFP 128

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G+L   L  L+     R+  ++++    +      +  
Sbjct: 129 -----SVFDDLYRAMVAAGEKSGHLDTVLNRLADYTERRQQTRSQITQALIYPSLMLFFA 183

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             +   + T+V     G  + +  D  G   + ++ +  L    ++ L++
Sbjct: 184 FGIVMLLLTVVVPKIVGQFDHMGQDLPGITQVLISVSTWLQNYGLILLVV 233


>gi|154486514|ref|ZP_02027921.1| hypothetical protein BIFADO_00329 [Bifidobacterium adolescentis
           L2-32]
 gi|154084377|gb|EDN83422.1| hypothetical protein BIFADO_00329 [Bifidobacterium adolescentis
           L2-32]
          Length = 260

 Score = 64.4 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 5/159 (3%)

Query: 26  SVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           SVR+G  +  A   +  Q +     E  R      +    S    +       Q  +   
Sbjct: 102 SVRSGATLVQAFEEL--QGAPFAVPELTRFRIDMAV---RSRCSLQEQHKHVDQLGAELH 156

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
              ++  QLG  +S  L  ++  L+ R+ +           +A+  ++ +LP     L  
Sbjct: 157 AACTLSLQLGCEMSRCLEAVAASLKRRRLLDDLRANAFAMPQATVKLLMALPLLTVMLGE 216

Query: 146 FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                 +  L+ D +G M LG A     +G   +R ++ 
Sbjct: 217 CMGAHPLRFLVEDVKGWMCLGFAGCCYAVGWYWIRRLMR 255


>gi|117617658|ref|YP_855996.1| Flp pilus assembly protein TadC [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559065|gb|ABK36013.1| Flp pilus assembly protein TadC [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 294

 Score = 64.4 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 63/149 (42%), Gaps = 3/149 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           ++   +K  A      P+A+D++V SV AGL +  A+  +    G     +  +F R   
Sbjct: 135 LQWRARKVKAAQQKVVPDAIDLLVISVEAGLALDRALLRVGHYLGALEPGLARQFLRTHA 194

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +    +  ++R+     L E+   +  + +  Q G  L+E +  +S+  R  + +  
Sbjct: 195 EIQMRGDQAGCLARLAWRTGLPELDRLANTLQMAQQYGSPLAETMRTISQEARQMRRLAL 254

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF 146
           + QA S+  K +   +  +   +  L+  
Sbjct: 255 EEQAGSLPGKITLIQMALIMLPMLVLIIA 283


>gi|229589908|ref|YP_002872027.1| putative type II secretion system protein F [Pseudomonas
           fluorescens SBW25]
 gi|229361774|emb|CAY48656.1| putative type II secretion system protein F [Pseudomonas
           fluorescens SBW25]
          Length = 403

 Score = 64.4 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 60/168 (35%), Gaps = 6/168 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
            +D   A   +   + A LP+  A++  V Q+    +      V      G+ L+E+++ 
Sbjct: 63  DNDLAWATRQLASLLGASLPLEAALSATVEQAEKKHIAQTLAGVRADVRGGMRLAEALAA 122

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             R     +       +    +  G+L++ +  L+  + +R N++ K+    +       
Sbjct: 123 RPR-----DFPSIYRALIAAGEESGDLAQVMERLADYIEERNNLRGKILTAFIYPGVVGL 177

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   + + V        +    D  G  L  + A+  +     +
Sbjct: 178 VSIGIVIFLLSYVVPQVVSAFSQARQDLPGLTLAMLNASDFIRAWGWL 225



 Score = 37.8 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 38/130 (29%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       S+  +             G++L+ +++       
Sbjct: 272 FASTLAILGGAGVPLLRALEAARQTLSNDRLSQCVNDATAKVREGVNLAPALAV------ 325

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +        +    +  G+L   L   ++ L      +A      +E      +   + 
Sbjct: 326 EKVFPPVLIHLIASGEKTGSLPPMLERAAQTLSRDIERRAMGMTALLEPLMIVVMGAVVL 385

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 386 VIVMAVLLPI 395


>gi|294788003|ref|ZP_06753247.1| type IV pilin biogenesis protein PilC [Simonsiella muelleri ATCC
           29453]
 gi|294484296|gb|EFG31979.1| type IV pilin biogenesis protein PilC [Simonsiella muelleri ATCC
           29453]
          Length = 424

 Score = 64.4 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 73/200 (36%), Gaps = 23/200 (11%)

Query: 2   KHLIKKRTAKFLD---------------DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSS 45
           +  +++R  K L                D       +   ++AGLP+  A  ++    S+
Sbjct: 57  RQKLQRRQVKVLQIVKMKKAKNKKITSADIAVFTRQLCTMMKAGLPLMQAFDIVAKGHSN 116

Query: 46  DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANL 105
             + +    V      G S++++ S+  +       S F   +    + GG L   L  L
Sbjct: 117 ASMTNLLMSVRADVEQGTSMADAFSKHPK-----YFSKFYCNLVGAGEAGGVLDSLLDKL 171

Query: 106 SRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN--DPRGHM 163
           +  +   + +K KV++      A   +   L   +   V        + +     P    
Sbjct: 172 ATYMEKTEAIKKKVKSALTYPIAILVVAVVLVIVMMMFVLPEFKKVYDSMGAKLPPLTEF 231

Query: 164 LLGVAAAFMLIGIMVMRLMI 183
           ++G++ AF+  G +++  ++
Sbjct: 232 MMGISNAFVAHGALIIIGLV 251


>gi|284028546|ref|YP_003378477.1| type II secretion system protein [Kribbella flavida DSM 17836]
 gi|283807839|gb|ADB29678.1| type II secretion system protein [Kribbella flavida DSM 17836]
          Length = 189

 Score = 64.4 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 63/157 (40%), Gaps = 4/157 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            ++KR A+   D P A+D++   +RAG P   A+A +      P+      V     LG 
Sbjct: 34  AVRKRNARISADLPLAVDLLAACLRAGRPPQAAIATVGHALDGPLAGLLAEVERRLDLGA 93

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              ++ S +         + F+       + G  L++ L + S  LR  +   A+ Q  +
Sbjct: 94  DAIDAWSVLRAE---PTCATFARATQRALRSGAPLAKTLESQSADLRQSRRWTAEQQTRA 150

Query: 124 MEAKASAWI-IGSLPFCVSTLVYFTSPGYMNVLINDP 159
           +E ++   + +  LP  V   V  T       ++ + 
Sbjct: 151 VETRSVLPLGLCFLPAFVLLGVVPTIAATFTDILTEL 187


>gi|186474108|ref|YP_001861450.1| type II secretion system protein [Burkholderia phymatum STM815]
 gi|184196440|gb|ACC74404.1| type II secretion system protein [Burkholderia phymatum STM815]
          Length = 323

 Score = 64.4 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 71/166 (42%), Gaps = 4/166 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +  L++ R     +D P+ALD++   V AGL +  A+  +  +    S  ++ E   V+ 
Sbjct: 157 LSRLVEARQRTIFEDLPDALDLMTVCVEAGLGLDAAMQRVAEEIGVKSRALKDELELVLL 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +++  +     ++++   ++++    + G ++ ++L      LR R+ ++A
Sbjct: 217 ELRAGSARDKALRNLALRTGVEDIDTLTSMLIQADRFGTSVGDSLRVFIDALRTRRRLRA 276

Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162
           + QA  +        +    P  +  L+   +    + L+    G 
Sbjct: 277 EEQAAKIALKLLFPLMFCIFPTLIVVLIGPAAMRVAHQLLPTMSGM 322


>gi|78049223|ref|YP_365398.1| type II secretory pathway component [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037653|emb|CAJ25398.1| type II secretory pathway component [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 405

 Score = 64.4 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/183 (10%), Positives = 56/183 (30%), Gaps = 5/183 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ L++K+              +   + AG P+  A+++++         E  R +    
Sbjct: 54  LRMLLRKKPFD-NAALVQFTQQLATLIGAGQPLDRALSILMD----LPEDEKSRRVIGDV 108

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                  +             S     +    + GG++ + L  L+  L   + ++ KV 
Sbjct: 109 RDTVRGGAPLSSALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKVI 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
              +       ++G     +   V          L           ++   ++    ++ 
Sbjct: 169 NALIYPAILLAVVGCALLFLLGYVVPQFAQMYESLDVTLPWFTQAVLSVGLLVRDWWIVL 228

Query: 181 LMI 183
           +++
Sbjct: 229 IVV 231


>gi|320095978|ref|ZP_08027592.1| hypothetical protein HMPREF9005_2204 [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319977085|gb|EFW08814.1| hypothetical protein HMPREF9005_2204 [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 178

 Score = 64.4 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 1/147 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +      R  +     P+A +++  +V AG  V  A+  +   S   +  E  R +    
Sbjct: 23  LTARADSRQRRVEAAVPDASELLALAVGAGESVPAALDRVASLSHSDLGDELARAVADIR 82

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG     +++ +        +S     +S     G  L+  L + +R +R+    +   +
Sbjct: 83  LGAPSVRALTDLAARNDSPALSRLCQTLSTAIGRGSPLAAVLHDQARDIREASRQRLMEE 142

Query: 121 ALSME-AKASAWIIGSLPFCVSTLVYF 146
               E A     +   LP  V   +Y 
Sbjct: 143 GGKREIAMLFPVVFLILPVTVLFALYP 169


>gi|302870514|ref|YP_003839151.1| Type II secretion system F domain-containing protein
           [Micromonospora aurantiaca ATCC 27029]
 gi|302573373|gb|ADL49575.1| Type II secretion system F domain [Micromonospora aurantiaca ATCC
           27029]
          Length = 282

 Score = 64.4 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 21/179 (11%), Positives = 61/179 (34%), Gaps = 2/179 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R    ++      +++  ++ +   +  A+      +  P+R + + +      G  L +
Sbjct: 89  RAIARIEAIATWAELLRDTLSSAAGLEQAITATAPVTPQPIRPQVQALAGAVRGGARLPD 148

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++      +           ++  +   G  LS+ L +L+   R+   ++ +V       
Sbjct: 149 ALRAFAADLADPTADLVVRALTQAAGYHGGQLSQCLTSLAATARELAGIRMRVATKRAAT 208

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           + +A +I      +   +   + G++        G ++L V  A    G   +      
Sbjct: 209 RTAARVITGTSVAMVAGLILLNRGFLAP-YRSVTGQLVLLVVGAVFAGGFWWLARASRV 266


>gi|309389115|gb|ADO76995.1| Type II secretion system F domain protein [Halanaerobium praevalens
           DSM 2228]
          Length = 414

 Score = 64.4 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 59/172 (34%), Gaps = 6/172 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMV 73
           +  N    +   + AG+P+  ++ +I  QS+     E   +++     G +LS ++    
Sbjct: 77  ELANFAQRLSVLIAAGIPLVRSLTIIKNQSNIKHEKEMLTQLLAKVEAGETLSSALEEQP 136

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           +Y P          +    + GG L E LA L    R+R  +  +V++          + 
Sbjct: 137 KYFPK-----LFVHLIRAGETGGVLDEVLAELVDYYRNRDKINKEVKSALYYPITIVLVA 191

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
               F +   V       +            + +  +  +     + L++  
Sbjct: 192 IVAVFILMGFVLPNILDMLTGFGGQIPLPTKILIFISNFISAYWWLILIVLI 243


>gi|162454530|ref|YP_001616897.1| hypothetical protein sce6250 [Sorangium cellulosum 'So ce 56']
 gi|161165112|emb|CAN96417.1| pulF [Sorangium cellulosum 'So ce 56']
          Length = 405

 Score = 64.4 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 48/143 (33%), Gaps = 6/143 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRM 72
            D    +      + AGLP+   + ++  Q  + +     + +  T   G + S+++ R 
Sbjct: 62  KDLVKFIRQFATMIDAGLPLVQCLEILSNQEPNKIFQAALKDIKNTVEQGATFSDALRRH 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +             +    ++GG L   L  L+  +  R  +  +V+       A   I
Sbjct: 122 PKI-----FDDLFVNLVQAGEVGGILDSILNRLAIYIEKRVKLARQVRGALAYPIAVIVI 176

Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155
           +  +   + + V  +        
Sbjct: 177 MVVVMVVLMSFVIPSFETMFAEF 199



 Score = 44.7 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/131 (9%), Positives = 39/131 (29%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP- 77
               +   + +G+P+ DA+ ++   + + V  E       +            M   +  
Sbjct: 272 FSRTLGTLLGSGVPILDALDIVAKTAGNVVVEEGLMYSRQKISEG------KNMAEPLGE 325

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +Q        +    +  G L   L  ++    +  ++        +E      + G + 
Sbjct: 326 MQVFPGMVVQMVAVGEQTGALDTMLNKIADFYEEEVDVAVAALTSLLEPLLMVIVGGMVG 385

Query: 138 FCVSTLVYFTS 148
             + ++     
Sbjct: 386 IVLISMYLPIF 396


>gi|299529575|ref|ZP_07043012.1| general secretion pathway protein F [Comamonas testosteroni S44]
 gi|298722438|gb|EFI63358.1| general secretion pathway protein F [Comamonas testosteroni S44]
          Length = 407

 Score = 64.4 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 55/159 (34%), Gaps = 9/159 (5%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74
                  +   V +GLP+  A+A +  ++ D         +    + G S + ++ +  R
Sbjct: 70  LAVWTRQLSGLVSSGLPIERALAALSEEAEDERQHQLVAALRAEVNAGSSFARALEQHPR 129

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                E S     +    +  G+L   L NL+  L  R+ +++K+   S+       +  
Sbjct: 130 -----EFSDIFCAVIGAGESSGSLGPVLENLADDLEARQALQSKLIGASLYPA---IVTL 181

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
                V  LV +  P    V     R    L V    + 
Sbjct: 182 VAIVIVIFLVSYVVPQVAGVFAGTKRALPFLTVVMLGIS 220



 Score = 36.3 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/129 (11%), Positives = 33/129 (25%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+  A+       ++       R      L L    +          
Sbjct: 276 FAGTLAMLAGAGVPILKALQAAAETLNNR----ALRADAMDALVLVREGAPLASALAQKK 331

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +       + +   +  G L   L   +  L      +A   A  +E      +   +  
Sbjct: 332 R-FPGLVAMFARLGEQTGQLPLMLQRAATQLSTEVQRRAMHLATILEPLLIVVMGLVVML 390

Query: 139 CVSTLVYFT 147
            V  ++   
Sbjct: 391 IVLAVLMPI 399


>gi|157959976|ref|YP_001500010.1| general secretion pathway protein F [Shewanella pealeana ATCC
           700345]
 gi|157844976|gb|ABV85475.1| general secretion pathway protein F [Shewanella pealeana ATCC
           700345]
          Length = 407

 Score = 64.4 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 62/174 (35%), Gaps = 8/174 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
             +       I   V AGLPV +A+  +  Q   D + S    V      G SL++S++ 
Sbjct: 66  TAELALITRQIATLVAAGLPVEEALKAVGQQCEKDRLASMVMAVRSRVVEGYSLADSMAE 125

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    +  G+L   L  L+     R+ +K+K+    +       
Sbjct: 126 FP-----HIFDELYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKMTQAMIYPIVLTV 180

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML--IGIMVMRLMI 183
           +   +   +   V     G    +  +      L +A++  +   G++V+ +++
Sbjct: 181 VAIGVIAILLAAVVPQVVGQFEHMGQELPWTTELLIASSDFIRDYGLIVLAVIV 234


>gi|167911026|ref|ZP_02498117.1| bacterial type II secretion system protein F domain [Burkholderia
           pseudomallei 112]
          Length = 264

 Score = 64.4 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  ++ +R        P+ALD++V    AG  ++ A+  +  +      P+  EF    +
Sbjct: 104 LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 163

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G   + +++ M   + L  +    T +    Q G  ++++L  LSR  R  + +  
Sbjct: 164 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 223

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K +  ++  +   V+ +
Sbjct: 224 EEKAAKLAPKMTLPMMLFVMPTVALI 249


>gi|145299824|ref|YP_001142665.1| flp pilus assembly protein FlpH [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|88866591|gb|ABD57359.1| FlpH [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142852596|gb|ABO90917.1| flp pilus assembly protein FlpH [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 294

 Score = 64.4 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 63/149 (42%), Gaps = 3/149 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           ++   +K  +      P+A+D++V SV AGL +  A+  +    G     +  +F R   
Sbjct: 135 LQWRARKVKSAQQKVVPDAIDLLVISVEAGLALDRALLRVGHYLGALEPGLARQFLRTHA 194

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +    +  ++R+     L E+   +  + +  Q G  L+E +  +S+  R  + +  
Sbjct: 195 EIQMRGDQASCLARLAWRTGLPELDRLANTLQMAQQYGSPLAETMRTISQEARQMRRLAL 254

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF 146
           + QA S+  K +   +  +   +  L+  
Sbjct: 255 EEQAGSLPGKITLIQMALIMLPMLVLIIA 283


>gi|125973852|ref|YP_001037762.1| type II secretion system protein [Clostridium thermocellum ATCC
           27405]
 gi|125714077|gb|ABN52569.1| type II secretion system protein [Clostridium thermocellum ATCC
           27405]
          Length = 289

 Score = 64.4 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 52/158 (32%), Gaps = 3/158 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIET 58
           +   + +R      DFP+ L+ ++  V AG+ VS A    V  S     +  E R V+  
Sbjct: 132 LSGKVNRRRLSIQLDFPDFLNKVILLVNAGMTVSRAWEKSVTDSEKDTVLYQELRTVLAD 191

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANL-SRILRDRKNMKA 117
              G S + +         + E++ F + +      G     ++  L +    + +   A
Sbjct: 192 IRGGKSETSAFEDFANRCRIPEITKFVSALLQNLNKGNAEMVSILRLQAAECWEMRKHAA 251

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           K        K    ++      +  +           +
Sbjct: 252 KRLGEEASTKMLFPMMLMFIAVILIVATPAVLTLTGSM 289


>gi|288559781|ref|YP_003423267.1| type II secretion system protein F GspF1 [Methanobrevibacter
           ruminantium M1]
 gi|288542491|gb|ADC46375.1| type II secretion system protein F GspF1 [Methanobrevibacter
           ruminantium M1]
          Length = 201

 Score = 64.4 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 63/166 (37%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
              + P AL  +   +RAG  + DA+  IV      +  EF RV+E    G +   +   
Sbjct: 25  ISKELPYALRQLSTELRAGKSLFDALDSIVDSDYGVLSREFSRVLEEIKYGETSENAFLN 84

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           + + +  + +S     I    ++G NLS +L  ++  +     MK K  +  + A    +
Sbjct: 85  LEKRVNSKALSRVIYEILASLRIGSNLSHSLNIIAEDVNFDMRMKLKEYSEKLNAFIMIY 144

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
              ++   V  L    +   +   I       +L      M+I  +
Sbjct: 145 TFLAILAPVIILTMLLAASVVIGDIVPSSLLFILYGLFFPMIIVFL 190


>gi|238786737|ref|ZP_04630538.1| Type II secretion system protein [Yersinia frederiksenii ATCC
           33641]
 gi|238725105|gb|EEQ16744.1| Type II secretion system protein [Yersinia frederiksenii ATCC
           33641]
          Length = 365

 Score = 64.4 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 55/162 (33%), Gaps = 9/162 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
           +        +   ++AGLP+ +++ ++  +    P +   + + +    G SLSE I+R 
Sbjct: 25  EHLLTVTRQLATLLQAGLPLVNSLQLLAKEMDTLPWQCLLQEISQQVSQGQSLSEVIARY 84

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P        + +    ++ GNL +    L      ++ ++ KV            I
Sbjct: 85  PNTFP-----RLYSPVIAMGEMTGNLEQCCVQLVHHQERQQKLQKKVVKALKYPIFVCVI 139

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
             ++   +  +V            + P    +L      M  
Sbjct: 140 ALTVSILMLVMVLPEFAKIYQS-FDTP--LPVLTATLLLMSA 178


>gi|225572862|ref|ZP_03781617.1| hypothetical protein RUMHYD_01053 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039788|gb|EEG50034.1| hypothetical protein RUMHYD_01053 [Blautia hydrogenotrophica DSM
           10507]
          Length = 337

 Score = 64.4 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 7/156 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRVIET 58
            KKR  + + D+P  +      ++AG+ V  A   I            P   E RR    
Sbjct: 181 RKKREEELIMDYPGLVTKFTLLIQAGMSVRGAFQKISEDCETKTKDRRPGYEEVRRTCIE 240

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQL-GGNLSEALANLSRILRDRKNMKA 117
              G+S  E+     +     +   FST++    +    NL + L   S    + +  +A
Sbjct: 241 MDSGVSQKEAYQNFGQRCAQAKYKTFSTLLVQNLRSGNRNLVDMLERESTEAWEERKRRA 300

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153
           ++   +   K    +I  L   ++ L+      + +
Sbjct: 301 RIHGETAATKLLVPMILMLGVVLALLMIPACLSFYS 336


>gi|148651967|ref|YP_001279060.1| type II secretion system protein [Psychrobacter sp. PRwf-1]
 gi|148571051|gb|ABQ93110.1| type II secretion system protein [Psychrobacter sp. PRwf-1]
          Length = 410

 Score = 64.4 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 60/181 (33%), Gaps = 7/181 (3%)

Query: 7   KRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLS 64
           +R  K    D    +  +    +AG+P+  A  +I        ++    RV +    G+S
Sbjct: 62  RRQKKITALDISLFVRQLATMTKAGVPIVQAFELIAQALDKPSMKQLVLRVKQQLETGMS 121

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L +S+    +             +   ++  G L   L  ++    + + +K K++    
Sbjct: 122 LEDSLRAHPKQ-----FDDLFCALVSAAEHSGTLDTLLERIADYKENNELLKIKLKKAIK 176

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
              A   +   +   +   V        + + +         V  + ++  +  + L++ 
Sbjct: 177 YPLAVMLVAMIVSIILLLKVVPVFADLYDSMGSQLPAFTQFVVTLSHIMQKLWPIFLLLT 236

Query: 185 F 185
            
Sbjct: 237 I 237



 Score = 37.8 bits (86), Expect = 0.64,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 36/130 (27%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +  +  AG+P+ +A+      + + V       +  Q       E   R  +  P 
Sbjct: 279 FCRTLATTYAAGVPLLEALGATAAATDNHVFETATYQMRQQVAAGQRLERSMRSSQLFP- 337

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                 +  +    +  G+L + L  ++     +           ME      I   +  
Sbjct: 338 ----ALAVQMVSIGEESGSLEQMLNKVADYYEAQVTHAIDGLTDLMEPIIMVIIGLLVGG 393

Query: 139 CVSTLVYFTS 148
            +  +     
Sbjct: 394 LIVAMYLPIF 403


>gi|260462613|ref|ZP_05810819.1| type II secretion system protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259031519|gb|EEW32789.1| type II secretion system protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 321

 Score = 64.4 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 61/152 (40%), Gaps = 4/152 (2%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF---RRVIETQHLGLSL 65
              +   FP+ +D+++    AG+ +  AV  +  + +   +        +      G  L
Sbjct: 170 KRIYRRGFPDFMDMMITCADAGMSLEAAVERVGAELAGTHKWLGIQLSIMTLQLRAGKPL 229

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E++  +   + L+E    + +     +LG +L++AL   S  +R ++ + A+ +A ++ 
Sbjct: 230 REALRELADRIGLEEARALAVLFRQSEELGTSLTDALRIYSDEMRGQRILHAEERANALP 289

Query: 126 AKASAWI-IGSLPFCVSTLVYFTSPGYMNVLI 156
            K    + +   P  +  ++         V  
Sbjct: 290 VKMMIPLGLCIFPVVMMVIMLPLIIRMKGVFF 321


>gi|119486410|ref|ZP_01620468.1| type II secretion system protein [Lyngbya sp. PCC 8106]
 gi|119456312|gb|EAW37443.1| type II secretion system protein [Lyngbya sp. PCC 8106]
          Length = 376

 Score = 64.4 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 59/164 (35%), Gaps = 6/164 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
            D             AG+ ++  ++V+  Q  +  ++     +      G +LSES+ + 
Sbjct: 34  KDLAIFARQFAAMFNAGIAMARCLSVLSEQCDNARLKRALTTIRADVEEGNALSESMRKF 93

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    ++GG L E L  L+ ++      ++++++     K   +I
Sbjct: 94  PD-----VFDMLFISMVSAGEVGGVLDEVLERLAVMMEKNHKTESEIKSAMSYPKTVLFI 148

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
             ++ F ++  +  T  G    +  +     ++ ++ +      
Sbjct: 149 ALAVFFAMTIFLLPTFAGIFEQIGTELPLFTVIMLSISDFCTTW 192


>gi|172065281|ref|YP_001815993.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
 gi|171997523|gb|ACB68440.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
          Length = 324

 Score = 64.4 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 68/164 (41%), Gaps = 4/164 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   I  R     +DFP+ALD++   V AGL +  A+  +  +    S+ V  E   ++ 
Sbjct: 157 LSRRIATRQRVIFEDFPDALDLLTVCVEAGLGLDAALMRVSEELRFRSEVVSGELDLLLL 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++         +++  F  ++    + G +++E+L  LS +LR R+ M+A
Sbjct: 217 EMRSGFTKETALRNFALRTGTEDIESFCAMLIQADRFGTSIAESLRVLSDMLRTRRRMRA 276

Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
           + +A  +        I    P  +  L+         VL+    
Sbjct: 277 EERAAKIALKLLFPLIFNIFPALMCVLLGPAMIHVYRVLLPSLA 320


>gi|120554274|ref|YP_958625.1| general secretion pathway protein F [Marinobacter aquaeolei VT8]
 gi|120324123|gb|ABM18438.1| general secretion pathway protein F [Marinobacter aquaeolei VT8]
          Length = 403

 Score = 64.4 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 55/161 (34%), Gaps = 9/161 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +++G+PV  A++    Q +   +RS    +      G +L++S    
Sbjct: 64  ADLALVTRQLATLIQSGIPVEQALSAAAQQSTKPRIRSMLIAIRAKVMEGYTLADSFGEF 123

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +  P               +  G+L   L  L+     R+  + K+Q  ++       +
Sbjct: 124 PKAFP-----RLYRSTVAAGEHAGHLDLVLNRLADYTESRQEARQKIQLAAIYPI---IL 175

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
                  V  L+ +  P  + V +   +    L VA   + 
Sbjct: 176 SVVAIAIVVFLLTYVVPDIIEVFLKQGQELPGLTVAMLSVS 216



 Score = 38.6 bits (88), Expect = 0.45,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +     +G+P+ +A+ +     S+  +R E R        G SL  S+ +   + P+   
Sbjct: 276 LSILTTSGVPLVEAMRIAGEVLSNDYLRQELREAARKVSEGGSLHRSLDQTGYFPPM--- 332

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L   L   +R+  +    K        E     ++   +   V 
Sbjct: 333 ---MLHMIASGEASGELDSMLERTARMQENTLQSKIAAIVGLFEPMMLLFMGAVVLIIVL 389

Query: 142 TLVYFT 147
            ++   
Sbjct: 390 AIMLPI 395


>gi|212224828|ref|YP_002308064.1| hypothetical protein TON_1677 [Thermococcus onnurineus NA1]
 gi|212009785|gb|ACJ17167.1| conserved hypothetical membrane protein [Thermococcus onnurineus
           NA1]
          Length = 304

 Score = 64.4 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 67/185 (36%), Gaps = 10/185 (5%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
             I KR  +     P+A   +  S+RAG+  S+A+  +       +  EF++ +     G
Sbjct: 86  WKITKRIEEMEKMLPDAFFYLASSLRAGISFSEALEELTTAKFGALTEEFKKTVAEIKKG 145

Query: 63  LSLSESISRMV-RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
            S  E++     R      +     +I    + G  +S+ L  +   +R+   +K + +A
Sbjct: 146 RSTVEALRAFAIRNRKSTVIYRSMMIIIEAIERGAPMSDILVFVGNDVREILRIKKERKA 205

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYM---------NVLINDPRGHMLLGVAAAFM 172
            +        +       +   +     G M         + +     G ++L    + +
Sbjct: 206 STGMQVMFFIVTSGFIGPLILGIVSQVMGAMSTGEITFPIDTIKTILLGFVVLQAIVSGL 265

Query: 173 LIGIM 177
            IG++
Sbjct: 266 GIGVI 270


>gi|167041769|gb|ABZ06512.1| putative bacterial type II secretion system protein F domain
           protein [uncultured marine microorganism HF4000_010L19]
          Length = 410

 Score = 64.4 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 52/156 (33%), Gaps = 6/156 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                   +RAGLPV + + +++ Q+    ++     + +    G +LS+   +  +   
Sbjct: 73  FCKQFATMLRAGLPVLNTLNMLIEQTKAPGMKKIITSIRKDLESGNALSKCFEKHPK--- 129

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G L   L  +   L  R+ +K+++++          +   + 
Sbjct: 130 --VFDTVVVNLIKAGEASGKLDTFLQKIVISLEKREKIKSQIKSALFYPGVLLSVAIIVT 187

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             +   V          +     G     +AA+  L
Sbjct: 188 IFMLMKVVPVFAKMYEGMGVPVPGSTAAIMAASDFL 223


>gi|51597675|ref|YP_071866.1| hypothetical protein YPTB3377 [Yersinia pseudotuberculosis IP
           32953]
 gi|51590957|emb|CAH22615.1| Putative exported protein [Yersinia pseudotuberculosis IP 32953]
          Length = 277

 Score = 64.4 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 4/157 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +K+ + KRT   L   P  +DI    V++G+ + +++     +           + +   
Sbjct: 117 IKNALTKRTNNLLKSLPFFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTK 176

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +     L  +I  +  Y P  E+  F + +      G  + E L +LS+ +R+ + +  +
Sbjct: 177 RAEINGLENAIKELQYYSPAIEMKMFCSTLQYSISFGSTVYEQLTHLSQDMREMQLLMTE 236

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                +  K +  +   +      LV   SP  + +L
Sbjct: 237 ESISKLSTKLTLPLFLFILIPFVLLV--ISPSILELL 271


>gi|332162959|ref|YP_004299536.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325667189|gb|ADZ43833.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 274

 Score = 64.4 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 59/147 (40%), Gaps = 2/147 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +K+++ KRT   L   P  +DI    V++G+ + ++++    +           +++   
Sbjct: 117 VKNIVAKRTKSLLRSLPFFIDITAACVQSGMTIDNSLSYSAKKFELINADLSLIMLKVTR 176

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +     L  +I    +     E+  F + +      G  + E L  LS+ +R+ + +  +
Sbjct: 177 RAEINGLENAIKEFNQSSTELEIRMFCSALQYSISFGATVYEQLIKLSKDMREMQLLVTE 236

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVY 145
            +   + AK +  +   +      LV 
Sbjct: 237 EKISKLTAKLTIPLFLFILIPFIVLVI 263


>gi|297581613|ref|ZP_06943535.1| flp pilus assembly protein TadC [Vibrio cholerae RC385]
 gi|297534020|gb|EFH72859.1| flp pilus assembly protein TadC [Vibrio cholerae RC385]
          Length = 305

 Score = 64.4 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 62/148 (41%), Gaps = 6/148 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIET 58
               K+R  + +    +A+D++V S+ AGL +  A+  +          +  +F R    
Sbjct: 150 SKQAKQRQQQIVA---DAMDLMVISIEAGLSLDRALERVGHYLLDVEPMLAKQFLRTHAE 206

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +    +  + ++     LQE+   +  +++  + G  L+E + N+S+  R  + M  +
Sbjct: 207 IQVLGDTALCMKKLAWRTGLQELERCAATLAMAQRYGSPLAETMRNISQDARQMRKMALQ 266

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYF 146
            QA  +  + +   +  +   +  L+  
Sbjct: 267 EQAGKLPGRITLIQMAFIMLPLLVLIIA 294


>gi|289755783|ref|ZP_06515161.1| conserved membrane protein [Mycobacterium tuberculosis EAS054]
 gi|289696370|gb|EFD63799.1| conserved membrane protein [Mycobacterium tuberculosis EAS054]
          Length = 221

 Score = 64.4 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 1/166 (0%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
            +++V  +RAG     A ++   ++  PV    R V     LG  ++  +    R   L 
Sbjct: 52  FELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAARSSALP 111

Query: 80  -EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                 +    + S  G  ++  +    R + +R+   A+V A    A+ASA I+  LP 
Sbjct: 112 AYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILPL 171

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
               L        ++ L+    G  LL V       G++    + +
Sbjct: 172 LGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITD 217


>gi|261253993|ref|ZP_05946566.1| MSHA biogenesis protein MshG [Vibrio orientalis CIP 102891]
 gi|260937384|gb|EEX93373.1| MSHA biogenesis protein MshG [Vibrio orientalis CIP 102891]
          Length = 406

 Score = 64.0 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 50/165 (30%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
           +        +    +AG+P+  ++  +   SS+  ++     V +    G SLS S+   
Sbjct: 66  EVLVIFCRQLYSLTKAGVPLLRSMKGLSQNSSNKQLQEALEDVTQELTNGRSLSSSMQMF 125

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +       S     +    +  G L EAL  L+         + +++            
Sbjct: 126 PK-----VFSPLFVSMIHVGENTGRLDEALLQLANYYEQEVETRKRIKTAMRYPTFVISF 180

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           I    F ++  V             D      + +A +   +   
Sbjct: 181 IMVAMFVLNVKVIPQFSSMFARFGVDLPLPTRILIATSEFFVNYW 225



 Score = 42.0 bits (97), Expect = 0.034,   Method: Composition-based stats.
 Identities = 11/135 (8%), Positives = 35/135 (25%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         ++AG+P++ ++A+      +              +  S+    +  
Sbjct: 268 RAQLSRFSRTFALMLKAGVPLNQSLALSAEALGNKFLE-----NRLLEMKSSIEAGGTIS 322

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +     +     +    +  G + E L  ++       +   K     +E      +
Sbjct: 323 STAINSGVFTPLVIQMISVGEETGRIDELLLEVADFYDREVDYDLKTLTARIEPILLVIV 382

Query: 133 IGSLPFCVSTLVYFT 147
            G +      +    
Sbjct: 383 AGMVLILALGIFLPM 397


>gi|259907451|ref|YP_002647807.1| type IV pilin biogenesis protein [Erwinia pyrifoliae Ep1/96]
 gi|224963073|emb|CAX54556.1| Putative outer membrane protein export (MTB) system [Erwinia
           pyrifoliae Ep1/96]
 gi|283477284|emb|CAY73200.1| Type IV pilus assembly protein tapC [Erwinia pyrifoliae DSM 12163]
          Length = 399

 Score = 64.0 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 17/144 (11%), Positives = 41/144 (28%), Gaps = 6/144 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMVRYMP 77
            L  +   ++AG+P+   + ++     +         + +    G   S+++       P
Sbjct: 64  FLRQLATLLKAGMPLPACLQLLADGHPEAGWQALLIHLHQRISAGEPFSQALREWPDIFP 123

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +L G L E    L+     ++ ++ KVQ           +   + 
Sbjct: 124 PLIP-----ALVHIGELTGELDECCLQLAIQQEKQQLLRQKVQKALRYPLFIMAVALLVS 178

Query: 138 FCVSTLVYFTSPGYMNVLINDPRG 161
             +   V                G
Sbjct: 179 IGMLVFVLPEFVAIYRSFNAPLPG 202



 Score = 40.9 bits (94), Expect = 0.090,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 7/135 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLSESISRMV 73
                   +  + RAGL +  ++  I    S  +  E    ++     G  L +++    
Sbjct: 264 QLSQIFTTLSLTQRAGLTLLHSLQAIEQTLSPLLWREAVSQLQQHIAAGYPLHQALKSHP 323

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
            + P          +    +  G+L   L  L+     + +  A   A ++E      I 
Sbjct: 324 LFTP------LCYQLVKVGEESGSLDTLLVRLAVWHEQQTHQLADTLAAALEPLMMIVIG 377

Query: 134 GSLPFCVSTLVYFTS 148
           G +   V  +     
Sbjct: 378 GIVGTLVVAMYLPVF 392


>gi|167902780|ref|ZP_02489985.1| bacterial type II secretion system protein F domain [Burkholderia
           pseudomallei NCTC 13177]
          Length = 270

 Score = 64.0 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  ++ +R        P+ALD++V    AG  ++ A+  +  +      P+  EF    +
Sbjct: 110 LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 169

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G   + +++ M   + L  +    T +    Q G  ++++L  LSR  R  + +  
Sbjct: 170 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 229

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K +  ++  +   V+ +
Sbjct: 230 EEKAAKLAPKMTLPMMLFVMPTVALI 255


>gi|283778327|ref|YP_003369082.1| type II secretion system protein [Pirellula staleyi DSM 6068]
 gi|283436780|gb|ADB15222.1| type II secretion system protein [Pirellula staleyi DSM 6068]
          Length = 474

 Score = 64.0 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 55/167 (32%), Gaps = 6/167 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
                     +     AGLP+  ++ ++ +      +++    V +    G +LSE++++
Sbjct: 73  SKQLSLFTKQLSILQDAGLPILRSLRILELQSKPGALKNALMDVGDEIESGSTLSEAMAK 132

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +       S     +    + GG L   L  LS  L   +++K KV+   +       
Sbjct: 133 SPK-----VFSRLYINMIKAGEAGGALEVILRRLSEFLERSESLKRKVKGAMIYPVVVVL 187

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +  S+   +   +        +           L +  +  ++    
Sbjct: 188 VAISILVFIMLKIVPVFKKMFDEFGLKLPAATELLINISNWVVNYGW 234


>gi|167626077|ref|YP_001676371.1| general secretion pathway protein F [Shewanella halifaxensis
           HAW-EB4]
 gi|167356099|gb|ABZ78712.1| general secretion pathway protein F [Shewanella halifaxensis
           HAW-EB4]
          Length = 407

 Score = 64.0 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 61/174 (35%), Gaps = 8/174 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
             +       I   V AGLP+ +A+  +  Q   D + S    V      G SL++S++ 
Sbjct: 66  TAELALITRQIATLVAAGLPIEEALKAVGQQCEKDRLASMVMAVRSRVVEGYSLADSMAE 125

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    +  G+L   L  L+     R+ +K+K+    +       
Sbjct: 126 FP-----HIFDELYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKMTQAMIYPIVLTV 180

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML--IGIMVMRLMI 183
           +   +   +   V     G    +  +      L +A++  +   G++V+  ++
Sbjct: 181 VAIGVIAILLAAVVPQVVGQFEHMGQELPWTTELLIASSDFIRDYGLIVLVAIV 234


>gi|152967731|ref|YP_001363515.1| type II secretion system protein [Kineococcus radiotolerans
           SRS30216]
 gi|151362248|gb|ABS05251.1| type II secretion system protein [Kineococcus radiotolerans
           SRS30216]
          Length = 286

 Score = 64.0 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 67/172 (38%), Gaps = 3/172 (1%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
            +P+ +D +  +VRAG  + +AV  +  +     R  F R         +    + R+  
Sbjct: 109 QWPDVVDTLASAVRAGASLPEAVCALAVRGPRSSRPAFARFAAAHRASGAFEPELRRLQD 168

Query: 75  YMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
            +        +  + +  Q  G +L   L  LS  LR+ +  + ++ A      ++A + 
Sbjct: 169 ELADPVFDRLAATLRMTRQVGGSDLGTTLRTLSGYLREDQRTRGELLARQSWTVSAARLA 228

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            + P+ V  L+  T PG +    +   G ++LG  A        VM  +   
Sbjct: 229 VAAPWVVLALL-ATRPGTLEA-FDTGAGVVVLGAGAVVSAGSYAVMSRLGRL 278


>gi|171060103|ref|YP_001792452.1| general secretion pathway protein F [Leptothrix cholodnii SP-6]
 gi|170777548|gb|ACB35687.1| general secretion pathway protein F [Leptothrix cholodnii SP-6]
          Length = 405

 Score = 64.0 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 54/172 (31%), Gaps = 6/172 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLS 66
           R              +   V AGLP+  A+  +  ++ DP + E    +    + G   +
Sbjct: 60  RRVFTSTTLAIWTRQLAGLVGAGLPLERALTALGDEAEDPKQGELLAHLRAEVNAGSPFA 119

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +++   R     E       +    +  G L   L  L+  L +R+ +K K+   ++  
Sbjct: 120 RALASAPR-----EFDDVYRAVVAAGEQSGQLGRVLDKLADDLEERQALKGKLIGATLYP 174

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
              + +   +   + T V                   +  +A +  L     
Sbjct: 175 AIVSLVAIVIVVFLVTYVVPQVAQVFAGGKRALPFLTMAMLAISDFLRTWGW 226



 Score = 38.6 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77
               +     +G+P+  A+       S+          +     G  L+ +++   R+  
Sbjct: 274 FAGTLAMLAGSGVPILKALQAAAETLSNRAMRADALDALAQVREGAPLASALAAKKRFPG 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                    + +   +  G L   L   +  L      +A   A  +E      +  ++ 
Sbjct: 334 ------LLQMFARLGEQTGELPLMLQRAATQLSAEVQRRAMQTATILEPLLIVVMGAAVM 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 LIVLAVLMPI 397


>gi|126454623|ref|YP_001066155.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
 gi|242317969|ref|ZP_04816985.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei 1106b]
 gi|126228265|gb|ABN91805.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei 1106a]
 gi|242141208|gb|EES27610.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei 1106b]
          Length = 314

 Score = 64.0 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  ++ +R        P+ALD++V    AG  ++ A+  +  +      P+  EF    +
Sbjct: 154 LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G   + +++ M   + L  +    T +    Q G  ++++L  LSR  R  + +  
Sbjct: 214 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 273

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K +  ++  +   V+ +
Sbjct: 274 EEKAAKLAPKMTLPMMLFVMPTVALI 299


>gi|170699039|ref|ZP_02890096.1| general secretion pathway protein F [Burkholderia ambifaria
           IOP40-10]
 gi|172059126|ref|YP_001806778.1| general secretion pathway protein F [Burkholderia ambifaria MC40-6]
 gi|170136075|gb|EDT04346.1| general secretion pathway protein F [Burkholderia ambifaria
           IOP40-10]
 gi|171991643|gb|ACB62562.1| general secretion pathway protein F [Burkholderia ambifaria MC40-6]
          Length = 405

 Score = 64.0 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 12/187 (6%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L   R     +        +   + AGLP+ +A+ V+  Q+  D +R     +     
Sbjct: 55  QRLAFGRKLSQREQ-AILTRQLASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++ +  R     +       +    +  G L   L+ L+  +     +K K+ 
Sbjct: 114 GGHSLANALGQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIMV 178
                      +       V+ L+ +  P  +NV  +  +   +L V   A    +    
Sbjct: 169 LAFTYPG---IVTLIAFGIVTFLLSYVVPQVVNVFASTKQQLPVLTVVMMALSEFVRHWW 225

Query: 179 MRLMINF 185
             ++I  
Sbjct: 226 WAILITV 232



 Score = 35.1 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       S+          I     G +LS +++ +  + P
Sbjct: 274 FASTLGILTAAGVPILRALQAAGETLSNRAMRANIDDAIVRVREGSALSRALNNVKTFPP 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G+++  L   +         +       +E      + G + 
Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAAEGEARELERRTMFLTSLLEPLLILAMGGIVL 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 VIVLAVMLPI 397


>gi|228982961|ref|ZP_04143220.1| Flp pilus assembly protein TadB [Bacillus thuringiensis Bt407]
 gi|228777144|gb|EEM25452.1| Flp pilus assembly protein TadB [Bacillus thuringiensis Bt407]
          Length = 321

 Score = 64.0 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 55/188 (29%), Gaps = 3/188 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K L      +  +  P+A+D I+R       +   +        +P+R     +     
Sbjct: 132 IKMLAVDLMEQIEEQLPSAIDHIIRISSKYGDMKSIIYETARSCDNPLREILENISRKM- 190

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVIS--VQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +       + +         ++     +   ++        E L +L  IL     +K  
Sbjct: 191 ISGDAETVLLQFGEEYDNVWINSLVFTLISYMEDASKTTTIENLRHLRNILEKENRLKKS 250

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
               +  + A  + I  L      L    +P       +   G +   +    +L  IM+
Sbjct: 251 RVTDAKYSVAINYFIAVLASGAGLLNIVLNPKGREFFFSSFLGLICFLLGYGAVLGTIML 310

Query: 179 MRLMINFD 186
              M    
Sbjct: 311 NIKMTRVK 318


>gi|115350106|ref|YP_771945.1| general secretion pathway protein F [Burkholderia ambifaria AMMD]
 gi|115280094|gb|ABI85611.1| general secretion pathway protein F [Burkholderia ambifaria AMMD]
          Length = 405

 Score = 64.0 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 12/187 (6%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L   R     +        +   + AGLP+ +A+ V+  Q+  D +R     +     
Sbjct: 55  QRLAFGRKLSQREQ-AILTRQLASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++ +  R     +       +    +  G L   L+ L+  +     +K K+ 
Sbjct: 114 GGHSLANALGQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIMV 178
                      +       V+ L+ +  P  +NV  +  +   +L V   A    +    
Sbjct: 169 LAFTYPG---IVTLIAFGIVTFLLSYVVPQVVNVFASTKQQLPILTVVMMALSEFVRHWW 225

Query: 179 MRLMINF 185
             ++I  
Sbjct: 226 WAILITV 232



 Score = 35.1 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       S+          I     G +LS +++ +  + P
Sbjct: 274 FASTLGILTAAGVPILRALQAAGETLSNRAMRANIDDAIVRVREGSALSRALNNVKTFPP 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G+++  L   +         +       +E      + G + 
Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAAEGEARELERRTMFLTSLLEPLLILAMGGIVL 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 VIVLAVMLPI 397


>gi|126440858|ref|YP_001058913.1| type II secretion system protein [Burkholderia pseudomallei 668]
 gi|254198255|ref|ZP_04904677.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei S13]
 gi|126220351|gb|ABN83857.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei 668]
 gi|169654996|gb|EDS87689.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei S13]
          Length = 314

 Score = 64.0 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  ++ +R        P+ALD++V    AG  ++ A+  +  +      P+  EF    +
Sbjct: 154 LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G   + +++ M   + L  +    T +    Q G  ++++L  LSR  R  + +  
Sbjct: 214 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 273

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K +  ++  +   V+ +
Sbjct: 274 EEKAAKLAPKMTLPMMLFVMPTVALI 299


>gi|302544239|ref|ZP_07296581.1| putative integral membrane protein [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461857|gb|EFL24950.1| putative integral membrane protein [Streptomyces himastatinicus
           ATCC 53653]
          Length = 230

 Score = 64.0 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 58/167 (34%), Gaps = 3/167 (1%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                +   +RAG    +A+  +    S  +   +  V      G  + E++ R  R   
Sbjct: 56  ELCGTVAGELRAGRQPGEALLSV---PSGDLGERWGLVSAAARFGGDVPEALRRAARQPG 112

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            + ++  +    V    G  L+  L  ++  LR  +  +  ++A     K +  ++  LP
Sbjct: 113 AEGLTGVAACWQVAVDEGAGLAAGLDRVASALRAEREQREILRARLAGPKVTVAVLAVLP 172

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                +        ++ L++ P G   L         G + +R  + 
Sbjct: 173 AFGLVMGAALGTEPLHQLLHTPVGLGCLLGGCLLEWAGFVWLRRSMR 219


>gi|262195827|ref|YP_003267036.1| general secretion pathway protein F [Haliangium ochraceum DSM
           14365]
 gi|262079174|gb|ACY15143.1| general secretion pathway protein F [Haliangium ochraceum DSM
           14365]
          Length = 412

 Score = 64.0 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 63/170 (37%), Gaps = 6/170 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMV 73
           +       +   +RAG+P+++++  +  Q  +P        V    + G SL++++ +  
Sbjct: 74  EVAAFTRQLATLLRAGIPLAESLGALFEQIENPKFQAIVGEVRTAVNEGSSLADALQKHP 133

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +L GNL E L  L+  +     +++KVQ   +       + 
Sbjct: 134 R-----VFDELFVSMVRAGELAGNLDEVLERLAEFMESSAQLRSKVQGAMIYPVIMIVVG 188

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            ++   +   V                 +  L +A + ++  +  + +++
Sbjct: 189 IAIMSILMVAVVPKITMIFEQQDKALPWNTELLIAMSNLIGSLWWLLILL 238



 Score = 35.1 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 41/134 (30%), Gaps = 7/134 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                   +   +RAG+P+  A+        +  +     R       G SL+ ++ R  
Sbjct: 277 AIARFTRTMSTMLRAGVPMLRALDTSKDILGNAVLMDVVDRARTAVSEGESLAVTLRRSG 336

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
            + P        T +    +  G L   L  +S    +  + +       +       + 
Sbjct: 337 HFPP------AVTHMIGVGERAGELENMLMRISDAYENDVDTEIGRLTSLLTPVMVIGMA 390

Query: 134 GSLPFCVSTLVYFT 147
             + F + +++   
Sbjct: 391 LGVGFVIFSIMMPI 404


>gi|91772494|ref|YP_565186.1| type II secretion system protein [Methanococcoides burtonii DSM
           6242]
 gi|91711509|gb|ABE51436.1| type II secretion system protein F domain [Methanococcoides
           burtonii DSM 6242]
          Length = 716

 Score = 64.0 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 23/187 (12%), Positives = 64/187 (34%), Gaps = 7/187 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQ 59
           K    +R        P A+  +    + G+ + +   ++     +   V  E   +I   
Sbjct: 175 KFQASERKGDIDRQLPYAVTFMYALSKGGMNIIEVFRLLSRSGSTYGEVSKEINAIIREM 234

Query: 60  HLGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
                 +  +IS +    P    +     +      GG++     + +     + ++  K
Sbjct: 235 DYFGYDMKTAISNISERSPSDRFNELMDNLITIIDSGGSIPRYFQDKAEQYLQKTSIDEK 294

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
               ++   A +++   +   +  ++     G M  ++      M+  +  A + IG ++
Sbjct: 295 GFLETLGLLAESYVTAFVAGPLFIIIM----GVMMAVMGSGSEVMVYAIIYAVLPIGSLM 350

Query: 179 MRLMINF 185
             +MI+ 
Sbjct: 351 FVVMISI 357



 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 64/145 (44%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           ++ ++      +FP+ L  +  +   G+ + D++ ++    S  + +E R +      G+
Sbjct: 494 IMSRKKKHLERNFPDFLKKLASTNETGMTLRDSIKLMAKSKSGHLGNEIRMIWADISWGM 553

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           ++++S+ R    +  Q ++   T+I+  ++  G++ E L   +R     ++MK +     
Sbjct: 554 NVNDSLIRFANRLRTQVIARSLTLITKANESSGDVGEVLLVAARDAASEQSMKRERAMSM 613

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTS 148
           M      +I   +   V  ++  T 
Sbjct: 614 MIYIVIIYISFLVFVGVIYVISTTF 638


>gi|150391218|ref|YP_001321267.1| type II secretion system protein [Alkaliphilus metalliredigens
           QYMF]
 gi|149951080|gb|ABR49608.1| type II secretion system protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 405

 Score = 64.0 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 21/186 (11%), Positives = 63/186 (33%), Gaps = 14/186 (7%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLS 66
           +      D           + AG+ ++ ++ V++ Q+ +  +++    +      G  LS
Sbjct: 60  KQKVKTKDLTVFCKQFYTMLNAGMSLTSSLEVLMDQTENKTLKAVIEDLFTQVQKGDILS 119

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++ +  +  P          +    ++ G L + L  +S        + +K++   +  
Sbjct: 120 DAMKKHKKVFPP-----ILLNMVEAGEMTGTLDDVLEKMSVHFEKENKINSKIKGAMIYP 174

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLIND-----PRGHMLLGVAAAFMLIGIMVMRL 181
                +       V  L+ F  P ++ +  +          +LL ++        + +  
Sbjct: 175 L---ILSIVAILVVIFLLVFIMPTFLTMFTSSGVQLPLPTRILLALSNVLTRFWYLFVIG 231

Query: 182 MINFDV 187
           +    V
Sbjct: 232 ISGIVV 237



 Score = 40.9 bits (94), Expect = 0.077,   Method: Composition-based stats.
 Identities = 13/124 (10%), Positives = 41/124 (33%), Gaps = 5/124 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+P+  A+      +++ V S+   ++        + + +S  V +  +
Sbjct: 274 FTRTLSTLLTSGIPIISALEASANVTNNKVVSDGIEMVVD-----DIRKGVSLAVLFKKM 328

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G+L + L+  +    +      +     +E      +   + F
Sbjct: 329 NVFPPMMVSMVSIGEESGSLDDMLSKTADFYDEELEAAIQQMVSMLEPLMIVVMAVIIGF 388

Query: 139 CVST 142
            V  
Sbjct: 389 IVIA 392


>gi|296158517|ref|ZP_06841347.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
 gi|295891085|gb|EFG70873.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
          Length = 293

 Score = 64.0 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 68/146 (46%), Gaps = 1/146 (0%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + + ++R  + L   P  LD +  +V AGL ++ A+   V +    P+R E   V+    
Sbjct: 136 RDVRRRRVGQILRHLPIYLDFLTLAVEAGLNINGAIQKSVEKGPEGPLRRELEHVLRDLK 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            GL+ +E++ R+   + ++EV+     +    ++G  L+++L   S   R  +  +A+ Q
Sbjct: 196 SGLNRTEALRRLDDRLRIKEVTNLVGTVVQAERMGSGLAKSLRFQSEQRRSERFQRAEKQ 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146
           A+    K    ++  +      ++ F
Sbjct: 256 AMEAPVKLVFPLLMFIFPITFIVLGF 281


>gi|254468444|ref|ZP_05081850.1| type II Secretion System PilC [beta proteobacterium KB13]
 gi|207087254|gb|EDZ64537.1| type II Secretion System PilC [beta proteobacterium KB13]
          Length = 410

 Score = 64.0 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 53/156 (33%), Gaps = 6/156 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISR 71
             D       +   VR+GL + D++ +I  Q+ + V R     +I   ++G+  S+ + +
Sbjct: 66  QKDLLIFTKKLATMVRSGLTILDSLNLISTQTENIVFRKYINEMIRDINVGMPFSDVVRK 125

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    ++ G L + L  +       + ++  +++          
Sbjct: 126 HP-----TVFDSIFCNMIEAGEISGKLDQFLDRIVDGQERMEKIRKGIKSALFYPVTLIV 180

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
           +   + + +   V  T       +  +  G   + +
Sbjct: 181 VTILIVWAMLIFVVPTFQEMYAGMGIELPGPTQMII 216


>gi|20092770|ref|NP_618845.1| hypothetical protein MA3976 [Methanosarcina acetivorans C2A]
 gi|19918065|gb|AAM07325.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 667

 Score = 64.0 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 62/163 (38%), Gaps = 4/163 (2%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           ++  +  D  P  L  +      G+ ++DA+A+    +   +RSE +  +       +L 
Sbjct: 455 RKIRQIEDQVPEFLKRLASINGTGILLADAIAITAQSNMGKLRSEIKCTVADIRWNSNLE 514

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++ R    +         T+I+  S+  G++ + ++ ++    D  +++  ++      
Sbjct: 515 EALKRFEARIRTNMTRRSLTLIAKASESTGDIHKVISTVA----DDADIEKNLKKERSAE 570

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
                 I  + FCV  ++ +    +    ++      +     
Sbjct: 571 MFIYVFIIFVTFCVFLVIVYVLAAFFLPALDGSSNPAMSMGGF 613



 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 55/181 (30%), Gaps = 6/181 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVR-AGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQ 59
                R        P+A   +    R  G+ + D +  +   S        EF  +I   
Sbjct: 149 MKADSRKRAINATMPHATAFLYVLQRGGGMTIFDIMKSLSKHSHLYGTASHEFGNIIRDV 208

Query: 60  HLGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
                 L +++       P ++       +      GG+++  L N + + +   N + K
Sbjct: 209 EYFGKDLQDALWNAADRTPSEQFKDLVDGLISIVSGGGDITLYLKNKTDLYKSNANKEHK 268

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
               ++   A  +I   +   +  +V       ++          +L   A      I +
Sbjct: 269 RFLDTLGLLAEVYITVFVVGPLFLMVILVVMNMIDN--GGATNLYILVYGAIPFGTAIFL 326

Query: 179 M 179
           +
Sbjct: 327 V 327


>gi|261250569|ref|ZP_05943144.1| general secretion pathway protein F [Vibrio orientalis CIP 102891]
 gi|260939138|gb|EEX95125.1| general secretion pathway protein F [Vibrio orientalis CIP 102891]
          Length = 408

 Score = 64.0 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 58/171 (33%), Gaps = 8/171 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V++G+P+ + +  +  QS    +R+    V      G +L++S++   
Sbjct: 69  DLALITRQLSTLVQSGMPLEECLKAVSEQSEKPRIRTMLLAVRSKVTEGYTLADSLADFP 128

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G+L   L  L+    +R+ +++K+Q   +         
Sbjct: 129 -----HIFDELFRSMVSAGEKSGHLDSVLERLADYAENRQKLRSKLQQAMIYPVVLVVFA 183

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLM 182
             +   +   V     G    +  +       LL  +      G+ ++  +
Sbjct: 184 VCIVAFLLAAVVPKIVGQFVQMGQELPQSTQFLLASSEFIQNWGLYLLIAI 234


>gi|78061921|ref|YP_371829.1| general secretion pathway protein F [Burkholderia sp. 383]
 gi|77969806|gb|ABB11185.1| General secretion pathway protein F [Burkholderia sp. 383]
          Length = 405

 Score = 64.0 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 59/174 (33%), Gaps = 15/174 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +   + +R              +   + AGLP+ ++++V+  Q+  D VR     +    
Sbjct: 59  LGRKLSQREQAI------ITRQLASLLVAGLPLDESLSVLSEQAERDYVRELMASIRAEV 112

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G S + ++S+  R     +       +    +  G L   L+ L+  +     +K K+
Sbjct: 113 VGGHSFANALSQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEQSNALKQKI 167

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
                       +       V+ L+ +  P   NV  +  +    L V    + 
Sbjct: 168 LLAFTYPG---IVTLIAFGIVTFLLSYVVPQVANVFTSTKQQLPTLTVVMLALS 218



 Score = 36.3 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 36/130 (27%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       S+          I     G +LS +++       
Sbjct: 274 FASTLGILTAAGVPILRALQAAGETLSNRAMRANVDDAIVRVREGSALSRALA------H 327

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +        +    +  G+++  L   S         +       +E      + G + 
Sbjct: 328 TKTFPPVLVHLIRSGEATGDVTTMLDRASEGESRELERRTMFLTSLLEPLLILAMGGVVL 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 VIVLAVMMPI 397


>gi|239814078|ref|YP_002942988.1| general secretion pathway protein F [Variovorax paradoxus S110]
 gi|239800655|gb|ACS17722.1| general secretion pathway protein F [Variovorax paradoxus S110]
          Length = 411

 Score = 64.0 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 57/169 (33%), Gaps = 13/169 (7%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVR 74
                  +   V +GLP+  A+  +  ++  +P R+    +    + G   + +++   R
Sbjct: 74  LSVWTRQLAGLVSSGLPLERALTALTDEAETEPQRNLVASLRAEVNAGSPFARALAAHPR 133

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                E S   T +    +  GNL   L  L+  L +R+ ++ K+   ++       +  
Sbjct: 134 -----EFSPIYTAVIGAGEQSGNLGLVLDRLADDLEERQALQQKLIGAALYPA---IVTL 185

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI----MVM 179
                V  LV +  P    V     R    L      +   +      M
Sbjct: 186 VAIVIVIFLVSYVVPQVAQVFAGTKRSLPFLTTVMLSLSAAVRSYGWWM 234



 Score = 35.1 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 39/130 (30%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+        +          +     G  L+ ++++  R+  
Sbjct: 280 FASTLAMLATAGVPILRALQAASETLGNRAMRADALDALVLVREGAPLASALAQKKRFPG 339

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                   ++ +   +  G L   L   +  L      +A   A  +E      + G + 
Sbjct: 340 ------LVSMFARLGEQTGTLPLMLQRAANQLGAEVQRRAMHLATILEPLLIVAMGGVVM 393

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 394 LIVLAVMLPI 403


>gi|86157052|ref|YP_463837.1| type II secretion system protein [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85773563|gb|ABC80400.1| type II secretion system protein [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 417

 Score = 64.0 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 48/169 (28%), Gaps = 6/169 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
             D           + AGLP+  A+ +I  Q+ +   R     V      G + ++++  
Sbjct: 77  TKDLLVFTRQFSVMIDAGLPLVQALDIIATQADNVEFRKVLSTVKVKVESGSTFADALGE 136

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +             +    ++GG L   L  L   +   + +  +V+   +       
Sbjct: 137 HPK-----VFDELFVQLVRAGEIGGILDTILQRLGAYIEKNEKLSRRVKGAMVYPAIVLT 191

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           +  S+   +   V  T                 L +  +        + 
Sbjct: 192 VAVSVVGILIAFVVPTFEKMFKDFGGAMPAPTQLLIDISHGFRNYWFVY 240



 Score = 41.3 bits (95), Expect = 0.065,   Method: Composition-based stats.
 Identities = 12/130 (9%), Positives = 40/130 (30%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+P+ DA+ ++   + +         +        +SE  +        
Sbjct: 286 FTRTLGTMLSSGVPILDALEIVAKSAGNRTIERGILYVR-----AKISEGKNIAGPLAET 340

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +        +    +  G +   L  ++    D  ++        +E     ++ G++ F
Sbjct: 341 KVFPAMVVQMIGVGEATGAMDAMLNKIADFYDDEVDVAVGALTSMIEPLMMVFLGGTVGF 400

Query: 139 CVSTLVYFTS 148
            +  +     
Sbjct: 401 FMIAMYMPIF 410


>gi|206891097|ref|YP_002248616.1| type IV pilin [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206743035|gb|ACI22092.1| type IV pilin [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 403

 Score = 64.0 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 59/181 (32%), Gaps = 13/181 (7%)

Query: 2   KHLIKKRTAKF-------LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFR 53
           +++ +K+  KF         D             +G+PV  A   ++GQ  +   +    
Sbjct: 41  RYVKEKQEKKFFSLGKVSQKDILFFTRQFATLFASGVPVVQAFDALIGQIKNKNFKKILI 100

Query: 54  RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
           ++      G SL++S+ R  R       S     +    + GG L + L  ++       
Sbjct: 101 QMRNDIEKGSSLADSMRRHPR-----VFSSLFVNMVRAGEEGGMLDKVLQRMADYFEKMI 155

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
            +K K+    +       +   +   +   V  T       +  D      + +A +  +
Sbjct: 156 KLKRKIIGAMIYPSLVIAVAILVVAIIMIFVIPTFAKLFAEMGLDLPLPTRITIAMSNFM 215

Query: 174 I 174
            
Sbjct: 216 A 216


>gi|270308518|ref|YP_003330576.1| type II secretion system protein [Dehalococcoides sp. VS]
 gi|270154410|gb|ACZ62248.1| type II secretion system protein [Dehalococcoides sp. VS]
          Length = 401

 Score = 64.0 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/174 (11%), Positives = 59/174 (33%), Gaps = 13/174 (7%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72
            +       +   + +G  +  ++ ++  Q+++ +       ++     G SLS ++S+ 
Sbjct: 62  REVILFSRQLALLLESGTDIVTSLELLQEQTTNKLFRDIIGEIVNDIRGGSSLSLAMSKH 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +  P          +    + GG+L   L NL+  ++     + K+++        A +
Sbjct: 122 PKAFPPLYHR-----VIAAGEQGGSLEIVLRNLANFVQRNVETEKKIKSALTYPGVVAVV 176

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-------AFMLIGIMVM 179
              +   + T V        + +  +      + +            + G  V+
Sbjct: 177 GILVLLLMVTFVLPAFTSLYSQMGTELPTPTKILIGLSDFFEAWGLYVTGAFVI 230



 Score = 35.1 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 47/140 (33%), Gaps = 7/140 (5%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSE 67
               L +   A   +    +AGLP+ + +      +++ + S     V      G  LS 
Sbjct: 260 RILLLSELSRACQTMSLLFKAGLPLPEIMNQATTAANNKLISNALAEVQHDLIRGEGLSR 319

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
            +++   ++P+         +    +  G L + L+ +S       + +       ++  
Sbjct: 320 PMTKNPLFLPM------MVQMVSVGEETGKLDDTLSTVSATYDTEADDRISAAIGMIQPI 373

Query: 128 ASAWIIGSLPFCVSTLVYFT 147
            +  I   + F    LV   
Sbjct: 374 MTIGIGLVVGFIAVALVSSM 393


>gi|146351305|ref|YP_001210532.1| putative typeII /IV secretion system integral membrane protein,
           TadB related [Arthrobacter nitroguajacolicus]
 gi|146218869|emb|CAL09940.1| putative typeII /IV secretion system integral membrane protein,
           TadB related [Arthrobacter nitroguajacolicus]
          Length = 290

 Score = 64.0 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 66/171 (38%), Gaps = 2/171 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +        +   +  G  +   + V +  + + ++ +   ++   +   S   ++    
Sbjct: 105 EALATWTHSLSGLITTGAILEHVLQVSLRNAPEEIKPQVSNLVSRLNYRWSPPAALKAFA 164

Query: 74  RYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + +     GG L++AL +L+ I+ D    + +++    + + +A +
Sbjct: 165 DELNDATADIVVAHLLLAYKIRGGGLADALDDLASIINDEVRHRREIETDREKPRTTAKL 224

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           +  +     T +   +  ++     +P G +LL +  A  ++ ++ MR M 
Sbjct: 225 VTLITAVSLTFMALFAGQFLAA-YKEPLGQLLLTIYLAGYVMILIWMRQMT 274


>gi|71898255|ref|ZP_00680429.1| type II secretion system protein [Xylella fastidiosa Ann-1]
 gi|71731994|gb|EAO34051.1| type II secretion system protein [Xylella fastidiosa Ann-1]
          Length = 463

 Score = 64.0 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 52/166 (31%), Gaps = 6/166 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   ++AG+P+  A+ ++   Q +  +R+   ++      G SL ESIS+ 
Sbjct: 123 KDIAFFSRQMATMMKAGVPIVGALDILANGQKNPRMRTMVNQIKNDIEGGSSLYESISKH 182

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L  ++    + + +K K++       A   +
Sbjct: 183 P-----VYFDELYRNLVRAGERAGVLETVLDTIASYKENIEALKGKIRKALFYPVAIVAV 237

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
              +   +   V             +      + V  +  +     
Sbjct: 238 ALIVSSILLIYVVPQFEDVFKGFGAELPAFTQMIVNFSNFMQRWWW 283



 Score = 38.2 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 44/136 (32%), Gaps = 5/136 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                        + RAG+P+ +A+ ++ G + +     +   +      +S+  SI+  
Sbjct: 326 NSALARFSRTTAVTFRAGVPLVEALGIVAGATGN---KVYSDAVFRMRDDVSVGYSINMS 382

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           +R + +         ++   +  G L   L  ++       +      +  +E     +I
Sbjct: 383 MRQVGI--FPHMVVQMASIGEEAGALDAMLFKVAEYYEQEVSNAVDGLSSLLEPLIMVFI 440

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V  +     
Sbjct: 441 GVIVGGMVIAMYLPIF 456


>gi|167620118|ref|ZP_02388749.1| Bacterial type II secretion system protein F domain [Burkholderia
           thailandensis Bt4]
          Length = 254

 Score = 64.0 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 62/146 (42%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +   + +R        P+ALD++V    AG  ++ A+  +  +      P+  EF    +
Sbjct: 94  LGFAVARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELGTICPPLADEFSVCAD 153

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G   + +++ M   + L  +    T +    Q G  ++++L  LSR  R  + +  
Sbjct: 154 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 213

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K +  ++  +   V+ +
Sbjct: 214 EEKAAKLAPKMTLPMMLFVMPTVALI 239


>gi|134298900|ref|YP_001112396.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
 gi|134051600|gb|ABO49571.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
          Length = 401

 Score = 64.0 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 58/167 (34%), Gaps = 7/167 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSL 65
           KR  K   +       +   + AG+P++  +  +  Q+ +  + S    V      G+  
Sbjct: 56  KRKVKL-GELAFFSRQLAAMLTAGIPLTRCLYTLSEQTSNPILASCAGEVASKVESGIGF 114

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           SE++S           S     +    ++ G+L+E L  LS  L   K ++  ++A +  
Sbjct: 115 SEALSS-----HKAIFSTMYIEMVKAGEMSGSLNEILTRLSLQLEKDKLLRDSLKAATFY 169

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
                   G +   +   V     G     +  P    ++   +  M
Sbjct: 170 PSIVLTFAGLVILAMMFFVVPIFIGMFPPGMKLPLPTQIVVGLSNSM 216



 Score = 39.7 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 39/130 (30%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
              ++   +  G+PV  A+      S     +E  R+  T+        +  +  ++ P 
Sbjct: 269 FSRMLATLLGGGIPVLQALESAGPSSGSRQVTEAIRMTGTRIQEGQSIATPLKESKFFPP 328

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G LS  L  ++    +      K  +  +E      +  ++  
Sbjct: 329 -----MVINMIAVGEETGQLSVLLGRVADFYEEEVATMTKGLSSILEPLLLIIVGITIGA 383

Query: 139 CVSTLVYFTS 148
            V  +     
Sbjct: 384 IVIAIYLPIF 393


>gi|330446856|ref|ZP_08310507.1| bacterial type II secretion system F domain protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491047|dbj|GAA05004.1| bacterial type II secretion system F domain protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 407

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/184 (10%), Positives = 51/184 (27%), Gaps = 6/184 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L K R     +D       +   + +G+PV  A+ ++    +        R    Q    
Sbjct: 57  LAKMRDQMKGEDITAVTRQLATMIESGVPVVQALQLMASSYN----KAEMRATLLQITTQ 112

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
             S +               F   +    +  G+L +  A ++      + M+ KV+   
Sbjct: 113 VESGASLSSAMRSSSPLFDKFYCDLVATGEQTGHLGQVFARIAVYREKNEAMRKKVKKAM 172

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRL 181
           +           +   +   V             +      +++  +   +  G   + +
Sbjct: 173 IYPSMVTLTAIVVTALMLIFVIPQFAQIFKGFGAELPIFTQVVILASDFLIAYGKYFIIV 232

Query: 182 MINF 185
           +   
Sbjct: 233 IALI 236


>gi|24372011|ref|NP_716053.1| type IV pilus biogenesis protein PilC [Shewanella oneidensis MR-1]
 gi|24345872|gb|AAN53498.1|AE015489_11 type IV pilus biogenesis protein PilC [Shewanella oneidensis MR-1]
          Length = 423

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/172 (9%), Positives = 51/172 (29%), Gaps = 8/172 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMV 73
           D       I   + AG+P+   + ++          E    ++     G+ LS+++    
Sbjct: 83  DIAMVTRQIATMLAAGVPLVTTIELLGRGHEKVKMRELLATILSEIQSGIPLSDALR--- 139

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +        +    +  G+L      ++      + +K+K++       A   + 
Sbjct: 140 --PHRRYFDDLYVDLVAAGEHSGSLDVVFDRIATYREKSEALKSKIKKAMFYPAAVVIVA 197

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183
             +   +   V             +      ++L ++        + +  ++
Sbjct: 198 ILVTALLLLFVVPQFEDIFKGFGAELPAFTQLVLQISRGLQSSWYIFLGAIV 249


>gi|331679033|ref|ZP_08379705.1| putative type II secretion protein [Escherichia coli H591]
 gi|331073098|gb|EGI44421.1| putative type II secretion protein [Escherichia coli H591]
          Length = 254

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +        L+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQASGVYW 229


>gi|300711546|ref|YP_003737360.1| type IV pilus biogenesis complex membrane subunit [Halalkalicoccus
           jeotgali B3]
 gi|299125229|gb|ADJ15568.1| type IV pilus biogenesis complex membrane subunit [Halalkalicoccus
           jeotgali B3]
          Length = 669

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 58/153 (37%), Gaps = 3/153 (1%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
                    + L  +  +   G+ + +++ V+   SS P+  EF  +      G SL +S
Sbjct: 449 RTAITGSLSDTLRKLSSANETGMTLLESIRVVAETSSGPLAREFEVIHAKVAYGTSLKDS 508

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           ++       +  ++    +IS   +    ++  L   ++   +R  ++ + ++ +   + 
Sbjct: 509 LTEFNNEYHIPRLARTVKLISKAQEASSQITAVLTTAAQASENRDEIERERRSRT---RM 565

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
              II      +  ++      +++V+     G
Sbjct: 566 QVVIILMTYLTLLAVMAILKTQFLDVMAGLDTG 598



 Score = 39.7 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 56/178 (31%), Gaps = 7/178 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQHL 61
            +  R  +      +++  +      GL   + +  I     +   V  EF+ ++     
Sbjct: 136 RVSARKREIDMLLADSIAFMYALSVGGLNQLEILEAIANADDTYGEVSREFQSIVHETEY 195

Query: 62  G-LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                  +I    R  P +E+S F T +      GG+++    +           + ++ 
Sbjct: 196 FDTDYRSAIRTQARETPSEELSQFLTDMLSIVDSGGDMTRFFEDKKDKHMRTAKQQEELT 255

Query: 121 ALSMEAKASAWII----GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
             ++E     ++       L   +  ++         +L       + L  A   +L+
Sbjct: 256 LETLELFGEMYMTLSLFPLLLIILLVIMSMLGEASEFMLYATVYALIPLVGAGFLVLV 313


>gi|256004306|ref|ZP_05429288.1| type II secretion system protein [Clostridium thermocellum DSM
           2360]
 gi|281418014|ref|ZP_06249034.1| Type II secretion system F domain protein [Clostridium thermocellum
           JW20]
 gi|255991740|gb|EEU01840.1| type II secretion system protein [Clostridium thermocellum DSM
           2360]
 gi|281409416|gb|EFB39674.1| Type II secretion system F domain protein [Clostridium thermocellum
           JW20]
 gi|316939950|gb|ADU73984.1| Type II secretion system F domain [Clostridium thermocellum DSM
           1313]
          Length = 289

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 52/158 (32%), Gaps = 3/158 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIET 58
           +   + +R      DFP+ L+ ++  V AG+ VS A    V  S     +  E R V+  
Sbjct: 132 LSGKVNRRRLSIQLDFPDFLNKVILLVNAGMTVSRAWEKSVTDSEKDTVLYQELRTVLAD 191

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANL-SRILRDRKNMKA 117
              G S + +         + E++ F + +      G     ++  L +    + +   A
Sbjct: 192 IRGGKSETSAFEDFANRCRIPEITKFVSALLQNLNKGNAEMVSILRLQAAECWEMRKHAA 251

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           K        K    ++      +  +           +
Sbjct: 252 KRLGEEASTKMLFPMMLMFIAVILIVATPAVLTLTGSM 289


>gi|22127363|ref|NP_670786.1| hypothetical protein y3489 [Yersinia pestis KIM 10]
 gi|45442765|ref|NP_994304.1| hypothetical protein YP_3003 [Yersinia pestis biovar Microtus str.
           91001]
 gi|108809095|ref|YP_653011.1| hypothetical protein YPA_3104 [Yersinia pestis Antiqua]
 gi|108810710|ref|YP_646477.1| hypothetical protein YPN_0545 [Yersinia pestis Nepal516]
 gi|145597782|ref|YP_001161858.1| hypothetical protein YPDSF_0472 [Yersinia pestis Pestoides F]
 gi|150260282|ref|ZP_01917010.1| putative type II secretion system integral membrane protein
           [Yersinia pestis CA88-4125]
 gi|162421097|ref|YP_001604880.1| hypothetical protein YpAngola_A0262 [Yersinia pestis Angola]
 gi|165925128|ref|ZP_02220960.1| type II secretion system protein [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165939890|ref|ZP_02228429.1| type II secretion system protein [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166009023|ref|ZP_02229921.1| type II secretion system protein [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212095|ref|ZP_02238130.1| type II secretion system protein [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167419193|ref|ZP_02310946.1| type II secretion system protein [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425195|ref|ZP_02316948.1| type II secretion system protein [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167466380|ref|ZP_02331084.1| type II secretion system protein [Yersinia pestis FV-1]
 gi|186896813|ref|YP_001873925.1| type II secretion system protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|218927879|ref|YP_002345754.1| hypothetical protein YPO0688 [Yersinia pestis CO92]
 gi|229837370|ref|ZP_04457533.1| Type II/IV secretion system protein TadC,associated with Flp pilus
           assembly [Yersinia pestis Pestoides A]
 gi|229840582|ref|ZP_04460741.1| Type II/IV secretion system protein TadC,associated with Flp pilus
           assembly [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229842868|ref|ZP_04463020.1| Type II/IV secretion system protein TadC,associated with Flp pilus
           assembly [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229900907|ref|ZP_04516031.1| Type II/IV secretion system protein TadC,associated with Flp pilus
           assembly [Yersinia pestis Nepal516]
 gi|270487717|ref|ZP_06204791.1| type II secretion system F domain protein [Yersinia pestis KIM D27]
 gi|294502754|ref|YP_003566816.1| hypothetical protein YPZ3_0644 [Yersinia pestis Z176003]
 gi|21960448|gb|AAM87037.1|AE013952_4 hypothetical [Yersinia pestis KIM 10]
 gi|45437631|gb|AAS63181.1| putative exported protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108774358|gb|ABG16877.1| hypothetical protein YPN_0545 [Yersinia pestis Nepal516]
 gi|108781008|gb|ABG15066.1| hypothetical protein YPA_3104 [Yersinia pestis Antiqua]
 gi|115346490|emb|CAL19364.1| putative exported protein [Yersinia pestis CO92]
 gi|145209478|gb|ABP38885.1| hypothetical protein YPDSF_0472 [Yersinia pestis Pestoides F]
 gi|149289690|gb|EDM39767.1| putative type II secretion system integral membrane protein
           [Yersinia pestis CA88-4125]
 gi|162353912|gb|ABX87860.1| type II secretion system protein [Yersinia pestis Angola]
 gi|165912201|gb|EDR30839.1| type II secretion system protein [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165923328|gb|EDR40479.1| type II secretion system protein [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165992362|gb|EDR44663.1| type II secretion system protein [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206841|gb|EDR51321.1| type II secretion system protein [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166963187|gb|EDR59208.1| type II secretion system protein [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167055958|gb|EDR65739.1| type II secretion system protein [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|186699839|gb|ACC90468.1| type II secretion system protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229682246|gb|EEO78338.1| Type II/IV secretion system protein TadC,associated with Flp pilus
           assembly [Yersinia pestis Nepal516]
 gi|229690135|gb|EEO82192.1| Type II/IV secretion system protein TadC,associated with Flp pilus
           assembly [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696948|gb|EEO86995.1| Type II/IV secretion system protein TadC,associated with Flp pilus
           assembly [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229705493|gb|EEO91503.1| Type II/IV secretion system protein TadC,associated with Flp pilus
           assembly [Yersinia pestis Pestoides A]
 gi|262364731|gb|ACY61288.1| hypothetical protein YPD8_0598 [Yersinia pestis D182038]
 gi|270336221|gb|EFA46998.1| type II secretion system F domain protein [Yersinia pestis KIM D27]
 gi|294353213|gb|ADE63554.1| hypothetical protein YPZ3_0644 [Yersinia pestis Z176003]
 gi|320016749|gb|ADW00321.1| Type II/IV secretion system protein TadC,associated with Flp pilus
           assembly [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 277

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 4/157 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +K+ + KRT   L   P  +DI    V++G+ + +++     +           + +   
Sbjct: 117 IKNALTKRTNNLLKSLPFFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTK 176

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +     L  +I  +  Y P  E+  F + +      G  + E L +LS+ +R+ + +  +
Sbjct: 177 RAEINGLENAIKELQYYSPAIEMKMFCSTLQYSISFGSTVYEQLTHLSQDMREMQLLMTE 236

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                +  K +  +   +      LV   SP  + +L
Sbjct: 237 ESISKLSTKLTLPLFLFILIPFVLLV--ISPSILELL 271


>gi|224283518|ref|ZP_03646840.1| Flp pilus assembly protein [Bifidobacterium bifidum NCIMB 41171]
 gi|310288221|ref|YP_003939480.1| conserved hypothetical membrane spanning protein [Bifidobacterium
           bifidum S17]
 gi|311065088|ref|YP_003971814.1| hypothetical protein BBPR_1760 [Bifidobacterium bifidum PRL2010]
 gi|309252158|gb|ADO53906.1| conserved hypothetical membrane spanning protein [Bifidobacterium
           bifidum S17]
 gi|310867408|gb|ADP36777.1| Conserved hypothetical protein, TadB-like protein [Bifidobacterium
           bifidum PRL2010]
          Length = 230

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 5/169 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
               +  +  SVRAG  +SD +A +         +            L            
Sbjct: 58  LSGVIAHMSSSVRAGGMISDVLADV----DGSGFAGVPLTASRLKRLLMRQRMPGESAAQ 113

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                    +   ++  + G +L++ L  +    R  + +    ++     +A+A ++G+
Sbjct: 114 AEHVAF-ELAVACAMCERSGCSLADCLDVVGENHRISRLLHDSRRSAFAVPRATAALLGA 172

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           LP     L        + VL    +G+  L V  A   +G++ M  M+ 
Sbjct: 173 LPLVTIGLGELLGARPVQVLFGSAQGNACLAVGGAGYALGLLWMSSMMR 221


>gi|222445846|ref|ZP_03608361.1| hypothetical protein METSMIALI_01490 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435411|gb|EEE42576.1| hypothetical protein METSMIALI_01490 [Methanobrevibacter smithii
           DSM 2375]
          Length = 305

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 69/170 (40%), Gaps = 2/170 (1%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           + P AL  +   ++AG  + D +  +   +   +  EF+RV++    G S  +++  M  
Sbjct: 132 ELPYALRHMATELKAGKGLHDTLLTVSIANYGSLSGEFKRVLKEIKYGKSSEDALMEMSL 191

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK--ASAWI 132
            +  + +S     I    ++GGNL+ +L  ++  +     +K K  +  +        +I
Sbjct: 192 RVSSEGLSRAVHQIVGTLRVGGNLANSLNVIAEDISFDMQIKLKEYSQKLNGFILIYTFI 251

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
               P  +  ++   S    +++  +    M +      ++   + ++ M
Sbjct: 252 AILAPVIILIMLMAASTVVGDIVSGEMVFIMYMFFFPLIVVFMALFIKRM 301


>gi|116052559|ref|YP_792874.1| type 4 fimbrial biogenesis protein pilC [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115587780|gb|ABJ13795.1| type 4 fimbrial biogenesis protein pilC [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 373

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 52/169 (30%), Gaps = 6/169 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   + AG+P+  +  +I        +R     + +    G SL+ S+ +  
Sbjct: 35  DIALFTRQMSTMMGAGVPLLQSFDIIGEGFENPNMRKLVDEIKQDVAAGNSLASSLRKKP 94

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G L   L  ++      +++KAK++       A   + 
Sbjct: 95  -----IYFDDLYCNLVDAGEQSGALETLLDRVATYKEKTESLKAKIKKAMTYPIAVIVVA 149

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
             +   +   V             +      + +  + ML    ++ L+
Sbjct: 150 LVVSAILLIKVVPQFQSVFANFGAELPAFTQMVINLSEMLQEWWLIVLI 198



 Score = 37.4 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 44/129 (34%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +  +  AG+P+ +A+  + G + + V      ++ +    G+ L+ S+          
Sbjct: 245 RTLSTTFAAGVPLVEALDSVSGATGNVVFKNAVTKIKQDVSSGMQLNFSMRT------TN 298

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +  ++   +  G+L E L  ++    +  +         ME    A +   +   
Sbjct: 299 VFPSMAIQMAAIGEESGSLDEMLGKVAGFYEEEVDNAVDNLTTLMEPMIMAVLGVLVGGL 358

Query: 140 VSTLVYFTS 148
           +  +     
Sbjct: 359 IIAMYLPIF 367


>gi|109896564|ref|YP_659819.1| general secretion pathway protein F [Pseudoalteromonas atlantica
           T6c]
 gi|109698845|gb|ABG38765.1| general secretion pathway protein F [Pseudoalteromonas atlantica
           T6c]
          Length = 406

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/168 (11%), Positives = 58/168 (34%), Gaps = 8/168 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V + LP+ +A+  +  QS     ++    V      G +L+++++   
Sbjct: 67  DLALLTRQLATLVESSLPIEEALMAVAQQSEKPRQKNMMMAVRSKVVEGYNLADAMAEFP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G+L   L  L+     R+  ++++    +      +  
Sbjct: 127 -----HVFDELFRAMVAAGEKSGHLDTVLNRLADYTEKRQQTRSQITQAMVYPTLMMFFA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA--FMLIGIMVM 179
             +   + T+V     G  + +  D      + ++ +      G++++
Sbjct: 182 MGIVILLLTVVVPKIVGQFDHMGQDLPTITKVLISVSEWMQNYGLLLI 229


>gi|171318825|ref|ZP_02907962.1| general secretion pathway protein F [Burkholderia ambifaria MEX-5]
 gi|171095966|gb|EDT40899.1| general secretion pathway protein F [Burkholderia ambifaria MEX-5]
          Length = 405

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 12/187 (6%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L   R     +        +   + AGLP+ +A+ V+  Q+  D +R     +     
Sbjct: 55  QRLAFGRKLSQREQ-AILTRQLASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++ +  R     +       +    +  G L   L+ L+  +     +K K+ 
Sbjct: 114 GGHSLANALGQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIMV 178
                      +       V+ L+ +  P  +NV  +  +   +L V   A    +    
Sbjct: 169 LAFTYPG---IVTLIAFGIVTFLLSYVVPQVVNVFASTKQQLPILTVVMMALSEFVRHWW 225

Query: 179 MRLMINF 185
             ++I  
Sbjct: 226 WAILIAV 232



 Score = 35.1 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       S+          I     G +LS +++ +  + P
Sbjct: 274 FASTLGILTAAGVPILRALQAAGETLSNRAMRANIDDAIVRVREGSALSRALNNVKTFPP 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G+++  L   +         +       +E      + G + 
Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAAEGEARELERRTMFLTSLLEPLLILAMGGIVL 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 VIVLAVMLPI 397


>gi|238759125|ref|ZP_04620294.1| Type II secretion system protein [Yersinia aldovae ATCC 35236]
 gi|238702673|gb|EEP95221.1| Type II secretion system protein [Yersinia aldovae ATCC 35236]
          Length = 273

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 63/157 (40%), Gaps = 4/157 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +++++ K+    L   P  +DI    V++G+ +  +++    +           +++   
Sbjct: 113 IRNIVSKKIRTLLQSLPFFIDITAACVQSGMTIDSSLSYTAKKFKLINADLSLIMLKITK 172

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +     L  +I    +Y    E+  F + +      G  + + L  LS+ +R+ + +  +
Sbjct: 173 RAEINGLENAIKEFQQYSTETEIKMFCSALQYSIIFGSTVYDQLIKLSQDMREMQLLVTE 232

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            +   + +K +  +   +      LV   SP  + +L
Sbjct: 233 EKNSKLSSKLTLPLFVFILIPFVALV--ISPSVLELL 267


>gi|187933106|ref|YP_001887487.1| bacterial type II secretion system protein F [Clostridium botulinum
           B str. Eklund 17B]
 gi|187721259|gb|ACD22480.1| bacterial type II secretion system protein F [Clostridium botulinum
           B str. Eklund 17B]
          Length = 400

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/179 (10%), Positives = 54/179 (30%), Gaps = 12/179 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            D           + AG+P+   + ++  Q+++    E  + +E       +        
Sbjct: 62  KDLSIFCRQFYTMLDAGVPILTCLNILTSQTTNKKLQETLKEVEDDVEKGGV----LSDA 117

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +        +    +  GNL   +  ++        +  KV+   +       + 
Sbjct: 118 MRKYTEVFPGLLVSLVAAGEASGNLDSIMLRMANHYEKENKVSNKVRNAMIYPI---ILG 174

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHM-----LLGVAAAFMLIGIMVMRLMINFDV 187
                 V  ++ +  P + ++ I            LL  +A+      M++  ++   +
Sbjct: 175 LVAITAVVFILTYVMPTFTDLFIESGLNLPWSTKFLLWSSASLKAHWFMILLAIVGITI 233



 Score = 37.8 bits (86), Expect = 0.75,   Method: Composition-based stats.
 Identities = 16/145 (11%), Positives = 47/145 (32%), Gaps = 6/145 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  + +         +   + +GLP+  A+ +++G   + +  +    ++ + +     
Sbjct: 259 RRLNEMII-VSRFTRTLSTLLSSGLPLVQALDIVIGVIDNKIAEDAILKVKEKVVRGESL 317

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            S  R     P          +    +  G+L + L   +    +      +     ME 
Sbjct: 318 NSSLRETEIFPQ-----MLYSMIKIGEETGSLDDILNKTADFYDEELESTIQTTVALMEP 372

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGY 151
                +   + F + +++      Y
Sbjct: 373 ALIVIMGLIIGFIIISIMIPMFDSY 397


>gi|21227617|ref|NP_633539.1| transporter [Methanosarcina mazei Go1]
 gi|20906004|gb|AAM31211.1| Transporter [Methanosarcina mazei Go1]
          Length = 662

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 53/148 (35%), Gaps = 1/148 (0%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  K  +  P  L  +     +GL +S+++ ++       +  E +++ E    G S S 
Sbjct: 444 RMRKIDERMPEMLRNLSSMNDSGLLLSNSLKIMAESKMGILSKELKKLKEDLSWGTSTSR 503

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS-MEA 126
           ++ ++   +     S     +   ++   +L   L+  +  ++  + +K +  +   +  
Sbjct: 504 ALMKLENNIRTATSSRILHTVIKANESTSDLKSVLSITAEQVKSEERLKKERSSEMVVYV 563

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154
                      F V  L  +  P   + 
Sbjct: 564 VTIYVSFFVFLFIVYVLAMYFFPESASF 591



 Score = 42.8 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/149 (8%), Positives = 40/149 (26%), Gaps = 2/149 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQHLGLSL 65
           R A        A+  +    + G+ + D    +   +        E   ++         
Sbjct: 128 RKACIDKSMLPAVTYMYALTKGGMSIYDVFRSLSRHTHIFGTSAEEISYIVRDMDYLGKD 187

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             +  +  +     E         +     G ++  + N S   +D   M  +    +++
Sbjct: 188 FITALKEAKERTPSERFKDFVDGLILVSSSGTITGYIKNKSEQYQDMAEMANRNLLKTLD 247

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
             A  ++   +   +  +       +   
Sbjct: 248 VLAEVYVTVLVAGPLFIMTTLIVLQFFRP 276


>gi|89074489|ref|ZP_01160966.1| putative general secretion pathway protein F [Photobacterium sp.
           SKA34]
 gi|89049777|gb|EAR55327.1| putative general secretion pathway protein F [Photobacterium sp.
           SKA34]
          Length = 408

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 58/167 (34%), Gaps = 11/167 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
            ++       +   V+A +P+ + +  +  Q+    +++    V      G +L++S++ 
Sbjct: 67  TNELALITRQLATLVQASMPLEECIKAVAEQNEKPRLKNILLAVRSRVVEGYTLADSMAE 126

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    +  G+L   L  L+    +R+ M++K+Q   +       
Sbjct: 127 YP-----HIFDQLFRAMVAAGEKSGHLDTILNRLADYTENRQQMRSKLQQAMIYPI---M 178

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +       V+ L+    P  ++  +    G  L  +    +     V
Sbjct: 179 LTLVAVSVVAFLLATVVPKIVDQFVQ--MGQQLPTITEVLLAASNFV 223


>gi|41615060|ref|NP_963558.1| hypothetical protein NEQ267 [Nanoarchaeum equitans Kin4-M]
 gi|40068784|gb|AAR39119.1| NEQ267 [Nanoarchaeum equitans Kin4-M]
          Length = 346

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 72/187 (38%), Gaps = 8/187 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +++I +        +P+ L  +  SV +G+ +  A+ +        +    R+++     
Sbjct: 57  QYMIAREQKALESVYPSFLRDLAESVSSGISLIYALKLTANADYGALNKYLRKLVIWLSW 116

Query: 62  GLSLSESISRMVRYMPL-QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           G+   +++ R  +Y      +   + ++    + GG++ + L  L+  +     M   + 
Sbjct: 117 GIPFPKAMERFNKYFYFSPAIRRANEILLEIYKSGGDIVKTLRLLAENIEKTSEMYKDI- 175

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML----LGVAAAFMLIGI 176
               + K+  ++I  +   +  +     P +  VL++   G  +        +  M+I  
Sbjct: 176 --ISQVKSKVFVIYMIFLILVAIAVIIKPIFAEVLVSKIGGKGIDVSYFKFLSFLMVISF 233

Query: 177 MVMRLMI 183
            +   ++
Sbjct: 234 AISSSIM 240


>gi|289641000|ref|ZP_06473169.1| type II secretion system protein [Frankia symbiont of Datisca
           glomerata]
 gi|289509120|gb|EFD30050.1| type II secretion system protein [Frankia symbiont of Datisca
           glomerata]
          Length = 315

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 61/157 (38%), Gaps = 6/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R  + L +FP   +++  +V AG     A+  +   S   +  E R  +    
Sbjct: 159 LTRAIREREERILIEFPTVAELLALAVTAGESPVGALERVSRLSHGELGRELRLALADAR 218

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +L +++  M     +  ++ F   ++V  + G  L+E L   +  +R+        +
Sbjct: 219 AGATLVQALEGMATRTTVPSLARFVDGMAVAIERGTPLAEVLRAQAVDVREAG------K 272

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
              +EA     I   +P     L       +   L++
Sbjct: 273 RQLLEAGGRKEIAMMVPVVFFVLPTTVIFAFYPALVS 309


>gi|269955831|ref|YP_003325620.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304512|gb|ACZ30062.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
           15894]
          Length = 312

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 62/162 (38%), Gaps = 6/162 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I +R  + + +FP   +++  +V AG     A+  +   +   +  E RR +    
Sbjct: 157 LTRQISQREERMVAEFPTIAELLALAVTAGEAPISALERVAATARGELSVEIRRTLADVR 216

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  ++ +++ M     L  ++ F+  ++V  + G  L+E L   ++ +R+        +
Sbjct: 217 AGAPIALALTDMADRTGLPSLTRFAEGVAVALERGTPLAEVLRAQAQDVRESG------R 270

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162
              MEA     ++  +P     L           L     G 
Sbjct: 271 RALMEAGGRKEVVMLVPVVFLILPITVVFAIYPSLATLRVGL 312


>gi|254507326|ref|ZP_05119462.1| general secretion pathway protein F [Vibrio parahaemolyticus 16]
 gi|219549786|gb|EED26775.1| general secretion pathway protein F [Vibrio parahaemolyticus 16]
          Length = 407

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/171 (11%), Positives = 50/171 (29%), Gaps = 6/171 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           D       +   V++G+P+ + +  +  QS  P        +        +         
Sbjct: 68  DLALITRQLATLVQSGMPLEECLKAVSEQSEKPRIRTMLLAVR----SKVVEGYTLADSL 123

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                        +    +  G+L   L  L+    +R+ +++K+Q   +          
Sbjct: 124 ADYPHIFDELFRSMVQAGEKSGHLDGVLERLADYAENRQKLRSKLQQAMIYPVVLVVFAV 183

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMI 183
            +   +   V     G    +  +       LL  +      G+ ++  +I
Sbjct: 184 GIVAFLLAAVVPKIVGQFVQMGQELPQSTQFLLASSDFIQHWGLQLLLAII 234


>gi|218246449|ref|YP_002371820.1| type II secretion system protein [Cyanothece sp. PCC 8801]
 gi|257059491|ref|YP_003137379.1| type II secretion system protein [Cyanothece sp. PCC 8802]
 gi|218166927|gb|ACK65664.1| type II secretion system protein [Cyanothece sp. PCC 8801]
 gi|256589657|gb|ACV00544.1| type II secretion system protein [Cyanothece sp. PCC 8802]
          Length = 404

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 58/166 (34%), Gaps = 10/166 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                   + AG+ +   + ++  Q+ +  ++     +      G+SLSE++ +      
Sbjct: 69  FSRQFSVMINAGVAIVRCLGILSEQASNPKLKKALGAISAEVQQGVSLSEAMGKHPEC-- 126

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    ++GG L E L  LS++L D   ++ ++++          +   + 
Sbjct: 127 ---FDELYVSMVEAGEMGGVLDEVLNRLSKLLEDMARLQNQIKSAMAYPVTVGVLAVLVF 183

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           F ++  +          L  +      +       + GIM    ++
Sbjct: 184 FGMTIFLIPVFAKIFEDLGAELP----MLTQIMLNISGIMRSWKIL 225



 Score = 37.8 bits (86), Expect = 0.65,   Method: Composition-based stats.
 Identities = 13/134 (9%), Positives = 39/134 (29%), Gaps = 7/134 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
              +     R+G+P+  ++ ++     +  + +           G  +S ++ R      
Sbjct: 273 FCRVFGTLTRSGVPILSSLEIVCNTVGNKVIANAIDAAKSEIQQGGMMSLALQRA----- 327

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +  +    +  G L   +  ++    D      K     +E      I G + 
Sbjct: 328 -NVFPQLAIQMISIGEETGELDAMMMKVADFYEDEVEQAIKAMTSMLEPLMMVGIAGMVG 386

Query: 138 FCVSTLVYFTSPGY 151
             + ++       +
Sbjct: 387 VILLSMYLPMFKIF 400


>gi|323497016|ref|ZP_08102039.1| general secretion pathway protein F [Vibrio sinaloensis DSM 21326]
 gi|323317860|gb|EGA70848.1| general secretion pathway protein F [Vibrio sinaloensis DSM 21326]
          Length = 407

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/149 (11%), Positives = 45/149 (30%), Gaps = 7/149 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           D       +   V++G+P+ + +  +  QS  P        +        +         
Sbjct: 68  DLALITRQLATLVQSGMPLEECLRAVSEQSEKPRIRTMLLAVR----SKVVEGYTLADSL 123

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                        +    +  G+L   L  L+    +R+ +++K+Q   +       ++ 
Sbjct: 124 ADYPHIFDELFRSMVQAGEKSGHLDGVLERLADYAENRQKLRSKLQQAMIYPV---VLVV 180

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
                V+ L+    P  +   +   +   
Sbjct: 181 FAVGIVAFLLAAVVPKIVGQFVQMGQELP 209


>gi|264676753|ref|YP_003276659.1| general secretion pathway protein F [Comamonas testosteroni CNB-2]
 gi|262207265|gb|ACY31363.1| general secretion pathway protein F [Comamonas testosteroni CNB-2]
          Length = 407

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 61/174 (35%), Gaps = 14/174 (8%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74
                  +   V +GLP+  A+A +  ++ D         +    + G S + ++ +  R
Sbjct: 70  LAVWTRQLSGLVSSGLPIERALAALSEEAEDERQHQLVAALRAEVNAGSSFARALEQHPR 129

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                E S     +    +  G+L   L NL+  L  R+ +++K+   S+       +  
Sbjct: 130 -----EFSDIFCAVIGAGESSGSLGPVLENLADDLEARQALQSKLIGASLYPA---IVTL 181

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-----IGIMVMRLMI 183
                V  LV +  P    V     R    L V    +       G  ++ +++
Sbjct: 182 VAIVIVIFLVSYVVPQVAGVFAGTKRALPFLTVVMLGISDFVRHYGWFMLAVLL 235



 Score = 35.5 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/129 (11%), Positives = 33/129 (25%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+  A+       ++       R      L L    +          
Sbjct: 276 FAGTLAMLAGAGVPILKALQAAAETLNNR----ALRADAMDALVLVREGAPLASALAQKK 331

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +       + +   +  G L   L   +  L      +A   A  +E      +   +  
Sbjct: 332 R-FPGLVAMFARLGEQTGQLPLMLQRAATQLSTEVQRRAMHLATILEPLLIVVMGLVVML 390

Query: 139 CVSTLVYFT 147
            V  ++   
Sbjct: 391 IVLAVLMPI 399


>gi|215432631|ref|ZP_03430550.1| transmembrane protein [Mycobacterium tuberculosis EAS054]
          Length = 167

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 1/163 (0%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ-EV 81
           +V  +RAG     A ++   ++  PV    R V     LG  ++  +    R   L    
Sbjct: 1   MVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAARSSALPAYW 60

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +    + S  G  ++  +    R + +R+   A+V A    A+ASA I+  LP    
Sbjct: 61  ERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGV 120

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            L        ++ L+    G  LL V       G++    + +
Sbjct: 121 LLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITD 163


>gi|84386792|ref|ZP_00989817.1| putative type IV pilus protein [Vibrio splendidus 12B01]
 gi|84378320|gb|EAP95178.1| putative type IV pilus protein [Vibrio splendidus 12B01]
          Length = 283

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 64/165 (38%), Gaps = 6/165 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   + +   +     P+A+D++V  V +GL +      +  +    S  +  E+     
Sbjct: 122 LDWRVNQVRMQISRVIPDAVDLMVVCVASGLTLEAVFRCVGEEMRAISPALSREWLLTAT 181

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +  S   ++S + + + L +++   T ++   Q G  L+EAL  ++   R    ++ 
Sbjct: 182 EISVLDSPQTALSNLDKRVQLPDINNIVTTMNQALQYGTPLAEALKLIASDSRQYHFLEL 241

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162
           +     + AK S  ++  +   V  ++       M  L     G 
Sbjct: 242 EEWVGKIPAKMSFPLVVFIMLPVVGIIVV---PIMLSLKQTLGGL 283


>gi|158333616|ref|YP_001514788.1| type II secretion system domain-containing protein/ pilin
           biogenesis protein PilC [Acaryochloris marina MBIC11017]
 gi|158303857|gb|ABW25474.1| type II secretion system domain protein/ pilin biogenesis protein
           PilC [Acaryochloris marina MBIC11017]
          Length = 406

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 51/150 (34%), Gaps = 6/150 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                   V AG+ +   + V+  Q  +  ++     V      G+SLS+++        
Sbjct: 70  FSRQFSALVNAGVALVRGLGVMSEQCKNPKLKKALLDVNAAVQQGVSLSDAMRGHPAA-- 127

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    + GG L E L  L+ +L D+  +K ++++         +I  S+ 
Sbjct: 128 ---FDQLYVAMIQAGETGGVLDEVLNRLATLLEDQARLKNQIRSALAYPVVVGFIAVSIF 184

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
             +   +     G  + L  D        V
Sbjct: 185 LGMVIFLIPVFDGIFSQLGGDLPAFTQFMV 214



 Score = 38.2 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 16/134 (11%), Positives = 41/134 (30%), Gaps = 7/134 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
                    R+G+P+  ++ ++   + + V S            G  LS ++ +      
Sbjct: 275 FCRTFGSLSRSGVPILYSLEIVRDTAGNQVVSNAIDEARREIQGGGMLSLALQK------ 328

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +     +T +    +  G + + L  ++    D      K     ME      + G + 
Sbjct: 329 EKVFPLLATQMINVGEETGEIDKMLMKVADFYEDEVEQAVKAMTSVMEPLMIVVLGGMVG 388

Query: 138 FCVSTLVYFTSPGY 151
             +  +       +
Sbjct: 389 SILVAMYLPMFKIF 402


>gi|71275174|ref|ZP_00651461.1| type II secretion system protein [Xylella fastidiosa Dixon]
 gi|170731165|ref|YP_001776598.1| fimbrial assembly protein [Xylella fastidiosa M12]
 gi|71163983|gb|EAO13698.1| type II secretion system protein [Xylella fastidiosa Dixon]
 gi|167965958|gb|ACA12968.1| fimbrial assembly protein [Xylella fastidiosa M12]
          Length = 463

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 52/166 (31%), Gaps = 6/166 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   ++AG+P+  A+ ++   Q +  +R+   ++      G SL ESIS+ 
Sbjct: 123 KDIAFFSRQMATMMKAGVPIVGALDILANGQKNPRMRTMVNQIKNDIEGGSSLYESISKH 182

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L  ++    + + +K K++       A   +
Sbjct: 183 P-----VYFDELYRNLVRAGERAGVLETVLDTIASYKENIEALKGKIRKALFYPVAIVAV 237

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
              +   +   V             +      + V  +  +     
Sbjct: 238 ALIVSSILLIYVVPQFEDVFKGFGAELPAFTQMIVNFSNFMQRWWW 283



 Score = 37.8 bits (86), Expect = 0.63,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 44/136 (32%), Gaps = 5/136 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                        + RAG+P+ +A+ ++ G + +     +   +      +S+  SI+  
Sbjct: 326 NSALARFSRTTAVTFRAGVPLVEALGIVAGATGN---KVYSDAVFRMRDDVSVGYSINMS 382

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           +R + +         ++   +  G L   L  ++       +      +  +E     +I
Sbjct: 383 MRQVGI--FPHMVVQMASIGEEAGALDAMLFKVAEYYEQEVSNAVDGLSSLLEPLIMVFI 440

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V  +     
Sbjct: 441 GVIVGGMVIAMYLPIF 456


>gi|78486064|ref|YP_391989.1| type II secretion system protein [Thiomicrospira crunogena XCL-2]
 gi|78364350|gb|ABB42315.1| Flp (type IV) pilus assembly protein, TadB homolog [Thiomicrospira
           crunogena XCL-2]
          Length = 296

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 58/141 (41%), Gaps = 3/141 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLS 64
           R  K     P+ LD+    + AGL   +A+  +  +       +  EF  +IE   +G+ 
Sbjct: 145 RLNKVNIALPDFLDMANICMSAGLSYLEAIKRVSKELESTFPEICYEFNFLIEQIKIGVP 204

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             E++ +     P +++     ++    +LG  +S AL   SR +  ++    + +A   
Sbjct: 205 RQEALKQFALRNPSKDIQDLVQMLIQNEKLGSPISTALNEFSRRMYQKRESAMEEKAAKT 264

Query: 125 EAKASAWIIGSLPFCVSTLVY 145
            AK +  I+  L      L+ 
Sbjct: 265 SAKMAIVILPFLMLPYFMLML 285


>gi|317131788|ref|YP_004091102.1| Type II secretion system F domain [Ethanoligenens harbinense
           YUAN-3]
 gi|315469767|gb|ADU26371.1| Type II secretion system F domain [Ethanoligenens harbinense
           YUAN-3]
          Length = 403

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/180 (11%), Positives = 56/180 (31%), Gaps = 7/180 (3%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSE 67
               L D           + +GL V   + ++  Q+    +++    V E    G SLS+
Sbjct: 57  KKIKLKDLSIFCRQFSTMLNSGLSVIKCLDILYQQTTKKNIKAIVLGVYEAVQRGESLSK 116

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +++                 +    +  G L   +  ++        ++ KV+   +   
Sbjct: 117 AMAL------QDAFPELLLNMVAAGEASGTLDTVMNRMATQYEKDNKLQNKVKQAMVYPI 170

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
               +  ++   + T +  T     +           + ++ +  + G   + ++    V
Sbjct: 171 FLVCMSVAVVIFLLTFIMPTFLKMFDQFGGKIPTTTKILLSISNAMTGYWYLFIIGVIAV 230



 Score = 40.5 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 44/134 (32%), Gaps = 7/134 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +     +GLP+  ++ ++     +        +  E    G+S+S SI ++     
Sbjct: 269 FARTLASLFSSGLPIIQSIEIVTRVIKNTYVKAGLLQATEDVRRGVSISGSIRKL----- 323

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +        +    +  GN+ E L   +    D  +   +     +E      +   + 
Sbjct: 324 -EIFPVMLCSMLNIGEESGNMDEILNKTAAFYDDEADTAIQQMVSLIEPIMIVVLALIVG 382

Query: 138 FCVSTLVYFTSPGY 151
           F + +++      Y
Sbjct: 383 FIIVSIITPIYSVY 396


>gi|315231663|ref|YP_004072099.1| hypothetical protein TERMP_01901 [Thermococcus barophilus MP]
 gi|315184691|gb|ADT84876.1| hypothetical protein TERMP_01901 [Thermococcus barophilus MP]
          Length = 302

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 52/144 (36%), Gaps = 1/144 (0%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
             I KR        P+A   +  S+RAG+  S+A+  +       +  EFR+ +     G
Sbjct: 83  WRIVKRIEDMEQMLPDAFFYLASSLRAGISFSEALEELTTAKFGALTEEFRKTVAEIKKG 142

Query: 63  LSLSESISRMV-RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
               E++     R      +     +I    + G  +++ L ++   +R+   +K + +A
Sbjct: 143 RPTVEALKAFALRNKKSPVIYRSMMIIIEALERGAPMADVLVSVGNDVREILRIKKERKA 202

Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145
            +        I       +   V 
Sbjct: 203 STGMQTMFFIIASGFVGPLILGVV 226


>gi|300741822|ref|ZP_07071843.1| putative type II secretion system protein F domain protein [Rothia
           dentocariosa M567]
 gi|300381007|gb|EFJ77569.1| putative type II secretion system protein F domain protein [Rothia
           dentocariosa M567]
          Length = 310

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 61/156 (39%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  +I +R  + + +FP   +++  SV AG     ++  I   S   +  EF  ++    
Sbjct: 155 LGQIIVRREKQLIAEFPALAEMMALSVAAGESALASLERICRTSRGELAREFNDILAQTR 214

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL  +++   +   +  +S F   ++V  + G  L++ L   ++ +RD    +    
Sbjct: 215 AGSSLLAALNEFAQSTQIPALSRFVDGVAVAIERGTPLADVLRAQAQDVRDNAKRELLEV 274

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
           A   E    A ++  +         F     M +  
Sbjct: 275 AGKKEIAMLAPVVFLILPLTVVFAIFPGLSLMKLAF 310


>gi|311111713|ref|YP_003982935.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
 gi|310943207|gb|ADP39501.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
          Length = 310

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 61/156 (39%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  +I +R  + + +FP   +++  SV AG     ++  I   S   +  EF  ++    
Sbjct: 155 LGQIIVRREKQLIAEFPALAEMMALSVAAGESALASLERICRTSRGELAREFNDILAQTR 214

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL  +++   +   +  +S F   ++V  + G  L++ L   ++ +RD    +    
Sbjct: 215 AGSSLLAALNEFAQSTQIPALSRFVDGVAVAIERGTPLADVLRAQAQDVRDNAKRELLEV 274

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
           A   E    A ++  +         F     M +  
Sbjct: 275 AGKKEIAMLAPVVFLILPLTVVFAIFPGLSLMKLAF 310


>gi|9107745|gb|AAF85335.1|AE004060_10 fimbrial assembly protein [Xylella fastidiosa 9a5c]
          Length = 490

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 52/166 (31%), Gaps = 6/166 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   ++AG+P+  A+ ++   Q +  +R+   ++      G SL ESIS+ 
Sbjct: 150 KDIAFFSRQMATMMKAGVPIVGALDILANGQKNPRMRTMVNQIKNDIEGGSSLYESISKH 209

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L  ++    + + +K K++       A   +
Sbjct: 210 P-----VYFDELYRNLVRAGERAGVLETVLDTIASYKENIEALKGKIRKALFYPVAIVAV 264

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
              +   +   V             +      + V  +  +     
Sbjct: 265 ALIVSSILLIYVVPQFEDVFKGFGAELPAFTQMIVNFSNFMQRWWW 310



 Score = 37.8 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 44/136 (32%), Gaps = 5/136 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                        + RAG+P+ +A+ ++ G + +     +   +      +S+  SI+  
Sbjct: 353 NSALARFSRTTAVTFRAGVPLVEALGIVAGATGN---KVYSDAVFRMRDDVSVGYSINMS 409

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           +R + +         ++   +  G L   L  ++       +      +  +E     +I
Sbjct: 410 MRQVGI--FPHMVVQMASIGEEAGALDAMLFKVAEYYEQEVSNAVDGLSSLLEPLIMVFI 467

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V  +     
Sbjct: 468 GVIVGGMVIAMYLPIF 483


>gi|170700844|ref|ZP_02891833.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
 gi|170134252|gb|EDT02591.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
          Length = 324

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 68/162 (41%), Gaps = 4/162 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   I  R     +DFP+ALD++   V AGL +  A+  +  +    S+ V  E   ++ 
Sbjct: 157 LTRRIATRQRVIFEDFPDALDLLTVCVEAGLGLDAALMRVSEELRFRSEVVSGELDLLLL 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++         +++  F  ++    + G +++E+L  LS +LR R+ M+A
Sbjct: 217 EMRSGFTKETALRNFALRTGTEDIESFCAMLIQADRFGTSIAESLRVLSDMLRTRRRMRA 276

Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158
           + +A  +        I    P  +  L+         VL+  
Sbjct: 277 EERAAKIALKLLFPLIFCIFPALMCVLLGPAMIHVYRVLLPS 318


>gi|218441093|ref|YP_002379422.1| type II secretion system protein [Cyanothece sp. PCC 7424]
 gi|218173821|gb|ACK72554.1| type II secretion system protein [Cyanothece sp. PCC 7424]
          Length = 404

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 57/167 (34%), Gaps = 12/167 (7%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                   + AG+ +   + V+  QS +  ++     +      G  LS+++ +      
Sbjct: 69  FSRQFSVMINAGVAIVRCLGVLSDQSGNKKLKKALASISADVQQGSPLSDAMGKHPDC-- 126

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    + GG L E L  L+++L D   ++ ++++      A   +   + 
Sbjct: 127 ---FDQLYVSMIEAGETGGVLDEVLDRLAKLLEDMARLQNQIKSAMAYPVAVGMLAVIVF 183

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVA-AAFMLIGIMVMRLMI 183
           F ++  +          L     G  L  +      L GIM    ++
Sbjct: 184 FAMTIFLIPVFAKIFQDL-----GVPLPALTQFMLFLSGIMRSWKIL 225



 Score = 38.9 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/134 (10%), Positives = 40/134 (29%), Gaps = 7/134 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
              +     R+G+P+  ++ ++     +  + +     I     G  +S +I +      
Sbjct: 273 FCRVFGTLTRSGVPILSSLDIVCNTVGNKVISNAVAGAIAEIQQGGMMSIAIQKA----- 327

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +  +    +  G L   +  ++    D      K     +E      I G + 
Sbjct: 328 -NVFPALAIQMISIGEETGELDAMMMKVADFYEDEVEQAVKALTSVIEPLMMVAIAGMVG 386

Query: 138 FCVSTLVYFTSPGY 151
             + ++       +
Sbjct: 387 TILLSMYLPMFAVF 400


>gi|182682542|ref|YP_001830702.1| type II secretion system protein [Xylella fastidiosa M23]
 gi|182632652|gb|ACB93428.1| type II secretion system protein [Xylella fastidiosa M23]
 gi|307578820|gb|ADN62789.1| type II secretion system protein [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 463

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 52/166 (31%), Gaps = 6/166 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   ++AG+P+  A+ ++   Q +  +R+   ++      G SL ESIS+ 
Sbjct: 123 KDIAFFSRQMATMMKAGVPIVGALDILANGQKNPRMRTMVNQIKNDIEGGSSLYESISKH 182

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L  ++    + + +K K++       A   +
Sbjct: 183 P-----VYFDELYRNLVRAGERAGVLETVLDTVASYKENIEALKGKIRKALFYPVAIVAV 237

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
              +   +   V             +      + V  +  +     
Sbjct: 238 ALIVSSILLIYVVPQFEDVFKGFGAELPAFTQMIVNFSNFMQRWWW 283



 Score = 38.2 bits (87), Expect = 0.56,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 44/136 (32%), Gaps = 5/136 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                        + RAG+P+ +A+ ++ G + +     +   +      +S+  SI+  
Sbjct: 326 NSALARFSRTTAVTFRAGVPLVEALGIVAGATGN---KVYSDAVFRMRDDVSVGYSINMS 382

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           +R + +         ++   +  G L   L  ++       +      +  +E     +I
Sbjct: 383 MRQVGI--FPHMVVQMASIGEEAGALDAMLFKVAEYYEQEVSNAVDGLSSLLEPLIMVFI 440

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V  +     
Sbjct: 441 GVIVGGMVIAMYLPIF 456


>gi|229588337|ref|YP_002870456.1| type IV fimbrial assembly protein [Pseudomonas fluorescens SBW25]
 gi|229360203|emb|CAY47060.1| type IV fimbrial assembly protein [Pseudomonas fluorescens SBW25]
          Length = 383

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/170 (8%), Positives = 44/170 (25%), Gaps = 4/170 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             D       +   ++AG+P+  A  +I          E  + ++      +        
Sbjct: 43  SADITLLTRQLATLLKAGIPLLQAFDIIGEGFESRPVRELVQGLKQAIAAGT----SLAE 98

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 +        +    +  G L   L  ++      + ++A+++       A   +
Sbjct: 99  ALRKQPRYFDELYCNLVAAGEQAGALETLLERVAIHREKSEQLRARIKKAMTYPIAVLVV 158

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
              +   +   V          +        L  +A +        +  +
Sbjct: 159 ASLVTGVLLIQVVPQFQSLFAGVDGKLPEFTLQVIALSEFTQKAWWVVAL 208



 Score = 36.6 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 43/129 (33%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +  +  AG+P+  A+  + G + S P R     +      G+ L++S++    +  + 
Sbjct: 255 RTLSTTFAAGVPLVQALDSVAGAAGSGPFRQAIEHMRHDVSTGMQLNQSMAASGLFPGM- 313

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +  ++   +  G L   L  ++       +         ME      + G +   
Sbjct: 314 -----AIQMTAIGEESGTLDRMLEKVANHYEADVDNLVDNLTSLMEPLIMVVLGGIVGAL 368

Query: 140 VSTLVYFTS 148
           V  +     
Sbjct: 369 VIAMYLPVF 377


>gi|220915777|ref|YP_002491081.1| type II secretion system protein [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219953631|gb|ACL64015.1| type II secretion system protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 417

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 50/168 (29%), Gaps = 4/168 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             D           + AGLP+  A+ +I  Q+ +P   EFRRV+ T  + +  S S    
Sbjct: 77  TKDLLVFTRQFSVMIDAGLPLVQALDIIATQADNP---EFRRVLSTVKVKVE-SGSTFAD 132

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 +        +    ++GG L   L  L   +   + +  +V+   +       +
Sbjct: 133 ALGEHPKVFDELFVQLVRAGEIGGILDTILQRLGAYIEKNEKLSRRVKGAMVYPAIVLTV 192

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
              +   +   V  T                   +  +        + 
Sbjct: 193 AVGVVAVLIAFVVPTFEKMFKDFGGAMPAPTQFLIDISHGFRNYWFVY 240



 Score = 41.3 bits (95), Expect = 0.070,   Method: Composition-based stats.
 Identities = 12/130 (9%), Positives = 40/130 (30%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+P+ DA+ ++   + +         +        +SE  +        
Sbjct: 286 FTRTLGTMLSSGVPILDALEIVAKSAGNRTIERGILYVR-----AKISEGKNIAGPLAET 340

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +        +    +  G +   L  ++    D  ++        +E     ++ G++ F
Sbjct: 341 KVFPAMVVQMIGVGEATGAMDAMLNKIADFYDDEVDVAVGALTSMIEPLMMVFLGGTVGF 400

Query: 139 CVSTLVYFTS 148
            +  +     
Sbjct: 401 FMIAMYMPIF 410


>gi|170729051|ref|YP_001763077.1| general secretion pathway protein F [Shewanella woodyi ATCC 51908]
 gi|169814398|gb|ACA88982.1| general secretion pathway protein F [Shewanella woodyi ATCC 51908]
          Length = 407

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 61/169 (36%), Gaps = 8/169 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            +       I   V AGLPV +A+  +  Q   D + S    V      G +L++S++  
Sbjct: 67  AELALITRQIATLVAAGLPVEEALKAVGQQCEKDRLASMIMAVRSRVVEGYNLADSMAEF 126

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G+L   L  L+     R+ +K+K+    +       +
Sbjct: 127 P-----HIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKMTQAMIYPVVLTVV 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML--IGIMVM 179
             S+   +   V     G    +  +     LL +A++  +   GI+++
Sbjct: 182 AISVIAILLAAVVPQVVGQFEHMGQELPWTTLLLIASSDFIRDYGIIIL 230


>gi|238790284|ref|ZP_04634058.1| Flp pilus assembly protein TadC [Yersinia frederiksenii ATCC 33641]
 gi|238721634|gb|EEQ13300.1| Flp pilus assembly protein TadC [Yersinia frederiksenii ATCC 33641]
          Length = 282

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 67/156 (42%), Gaps = 4/156 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQ 59
           K+++  R  K   D P  +D++   V++GL +  ++  +       +     F   +  +
Sbjct: 126 KYIVNARIEKIERDMPLFVDLLAICVQSGLTIESSLKFLAENVGDINDNFVPFLDRLVKK 185

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                L   ++ + + +P +EVS     +    + G ++ E L  LS  +R+ + +K + 
Sbjct: 186 IEVNGLEAGLTHLQKELPSREVSMLCVTLQQSLRYGSSIYEYLMELSSEMRELQLLKTEE 245

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
               + AK S  ++    F V  ++    PG M V+
Sbjct: 246 IIGKLSAKMSIPLVLFFMFPVVIIIAA--PGIMRVM 279


>gi|138896194|ref|YP_001126647.1| PilC II secretion system protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|134267707|gb|ABO67902.1| PilC, bacterial type II secretion system protein [Geobacillus
           thermodenitrificans NG80-2]
          Length = 403

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 54/171 (31%), Gaps = 6/171 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
             F   L      VRAG+ + D+V ++  Q+    +      + ++   G  LS + +R 
Sbjct: 63  QHFVIFLRQFATLVRAGVTIVDSVHILAEQTESKSLARALSDIEQSLRGGNPLSTAAARH 122

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R  P          +    +  G L E L  L+         + K+ +      A A I
Sbjct: 123 PRLFP-----SLFVNMVRAGEASGTLDETLDRLADHFEKMHRTRQKIVSALAYPIAIAII 177

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             ++   +   V             +        +  + ++       +++
Sbjct: 178 ATAVVIFLLVAVVPAFVEMFADFHAELPAITKFVLKTSDVMQHYWWAMVLL 228


>gi|309778765|ref|ZP_07673538.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
 gi|308922473|gb|EFP68097.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
          Length = 329

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 63/147 (42%), Gaps = 5/147 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLSES 68
             D+ P  +D++      GL +  ++ VI  +       +  EF R  +    G    ++
Sbjct: 176 MDDELPVMVDMLRLLQGVGLSIDQSLQVIANEFHGMLPVLAGEFGRANQQFASGRPREQT 235

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           + R+ R    +++    T+++   + GG + E L      L++ +  + K +   +  + 
Sbjct: 236 LLRIARLFDNEDLKGLITLLTQVDRFGGAVQEPLRQFGGRLQENRRARLKERVGKLTVQM 295

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  ++ +L   +  L+    PG+M V+
Sbjct: 296 TMIMVMTLLPAL--LIITAGPGFMGVM 320


>gi|167044731|gb|ABZ09401.1| putative bacterial type II secretion system protein F domain
           protein [uncultured marine microorganism
           HF4000_APKG7N23]
          Length = 191

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 71/185 (38%), Gaps = 3/185 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +K R A    +   A+  I   + +G+ V++A+  I  +    +   FR++      G +
Sbjct: 1   MKSRLASVDQELLYAIRAIEVLLESGVGVAEAMKHIADEDYGDLSVIFRQIFADTDSGRN 60

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
            S+++   +R      +    + + +  +   N+ + L +++      + M+       +
Sbjct: 61  FSDAMRTQMRSTDSAGLRKVLSSLIMSMEEDTNVIDRLRSIAEREAKERRMELDGFIEGL 120

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMN---VLINDPRGHMLLGVAAAFMLIGIMVMRL 181
              A  +I  S+   +  ++       M     +         + V  +F++ G+ +  L
Sbjct: 121 AGTAEFFIALSILLPLIVVIAAVISSIMEGAGAIFGGGMTMPPICVPVSFLVTGLGLAGL 180

Query: 182 MINFD 186
           ++N  
Sbjct: 181 IVNTK 185


>gi|117619869|ref|YP_855104.1| general secretion pathway protein F [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561276|gb|ABK38224.1| general secretion pathway protein F [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 406

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 49/162 (30%), Gaps = 6/162 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66
           R      +       +   V AGL + +A+  +  Q     +RS    V      G SL+
Sbjct: 60  RRGASTAELAMITRQLATLVGAGLTIEEALKAVAEQCEKAHLRSMVATVRSKVVEGYSLA 119

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S++                 +    +  G+L + L  L+     R++M+ K+    +  
Sbjct: 120 DSLAAFP-----HVFDQLFRSMVAAGEKSGHLEKVLNRLADYTEQRQHMRTKLLQAMIYP 174

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168
                +   +   + T V          +           + 
Sbjct: 175 IVLTCVAIGVISILLTAVVPKVVAQFEHMGQQLPATTRFLIG 216


>gi|254238815|ref|ZP_04932138.1| pilin biogenesis protein pilC [Pseudomonas aeruginosa C3719]
 gi|126170746|gb|EAZ56257.1| pilin biogenesis protein pilC [Pseudomonas aeruginosa C3719]
          Length = 405

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/169 (11%), Positives = 52/169 (30%), Gaps = 6/169 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   + AG+P+  +  +I        +R     + +    G SL+ S+ +  
Sbjct: 67  DIALFTRQMSTMMGAGVPLLQSFDIIGEGFENPNMRKLVDEIKQDVAAGNSLASSLRKKP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G L   L  ++      +++KAK++       A   + 
Sbjct: 127 -----IYFDDLYCNLVDAGEQSGALETLLDRVATYKEKTESLKAKIKKAMTYPIAVIVVA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
             +   +   V             +      + +  + +L    ++ L+
Sbjct: 182 LVVSAILLIKVVPQFQSVFANFGAELPAFTQMVINLSEILQEWWLIVLI 230



 Score = 37.8 bits (86), Expect = 0.63,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 44/129 (34%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +  +  AG+P+ +A+  + G + + V      ++ +    G+ L+ S+          
Sbjct: 277 RTLSTTFAAGVPLVEALDSVSGATGNVVFKNAVTKIKQDVSSGMQLNFSMRT------TN 330

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +  ++   +  G+L E L  ++    +  +         ME    A +   +   
Sbjct: 331 VFPSMAIQMAAIGEESGSLDEMLGKVAGFYEEEVDNAVDNLTTLMEPMIMAVLGVLVGGL 390

Query: 140 VSTLVYFTS 148
           +  +     
Sbjct: 391 IIAMYLPIF 399


>gi|42523018|ref|NP_968398.1| pilC; type II secretion system protein [Bdellovibrio bacteriovorus
           HD100]
 gi|39575223|emb|CAE79391.1| pilC; bacterial type II secretion system protein [Bdellovibrio
           bacteriovorus HD100]
          Length = 405

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 53/158 (33%), Gaps = 9/158 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRM 72
            D           + AG+PV D++ ++        ++    +V  +   G  L++S++++
Sbjct: 66  KDLQIFTRQFATLINAGIPVVDSLKILSEGLRPGLLKEASAQVKTSIEGGRRLADSMAQV 125

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L  L+  +   + +KA+V+   +       +
Sbjct: 126 PN-----VFDKLYVNMIQAGEEAGILDGILQRLASYMEKSEKIKAQVKGALVYPMVIIVV 180

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
              +   +   +    P +M       +   +L +   
Sbjct: 181 AMIVIAGILVFII---PKFMEFFAGSGKEPPMLTLMVV 215



 Score = 43.6 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 11/134 (8%), Positives = 34/134 (25%), Gaps = 5/134 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                   +   + +G+ + +A+ +    +   V  E   +   + +    + +      
Sbjct: 270 AIARLTRTLSTLLSSGVGLIEAIEISAKTA-GNVVIEQSLLRCKESVTAGRTFASPLAKE 328

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                        +    +  G +   L  ++    D      K     +E      + G
Sbjct: 329 KA----FPEMVVQMISIGEQSGTMDIMLGKIADFYEDEVETAVKAMTSLLEPLLMVVLGG 384

Query: 135 SLPFCVSTLVYFTS 148
            +   V  +     
Sbjct: 385 IIAVLVVAMYLPIF 398


>gi|182418624|ref|ZP_02949901.1| bacterial type II secretion system protein F [Clostridium butyricum
           5521]
 gi|237669077|ref|ZP_04529061.1| type II secretion system protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377486|gb|EDT75040.1| bacterial type II secretion system protein F [Clostridium butyricum
           5521]
 gi|237657425|gb|EEP54981.1| type II secretion system protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 400

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/173 (10%), Positives = 49/173 (28%), Gaps = 6/173 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRM 72
            D           + AG+P+   + ++  Q  +    E   +V E    G  LS+++ + 
Sbjct: 62  KDLSIFCRQFYTMLDAGVPILTCLKILSDQIQNKKLKEAIVKVNEDVETGEVLSDAMRK- 120

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          ++   +  G+L   +  ++        +  KV+   +      ++
Sbjct: 121 ----HKDVFPDLLVSLTASGEASGSLDSVMLRMATHYEKENKINNKVKNAMIYPIVLGFV 176

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
                  +   V  T                   +  +  +    ++ L +  
Sbjct: 177 SVVAVTFILVYVMPTFMQIFEESGTQLPWSTKFLLGLSSGIQNNWIVMLFVLI 229



 Score = 44.7 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/136 (9%), Positives = 39/136 (28%), Gaps = 5/136 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +GL +  A+ ++     + +       I+   +      S  +     P 
Sbjct: 270 FTRTLSILMASGLSLIKALEIVSEVVGNKIVENAMIKIKDSVMRGDSLYSSMKESNMFPP 329

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G+L + L   +    +      +     +E      +   + F
Sbjct: 330 -----MLYSMIKVGEETGSLDDILNKTADFYDEELETTIQTSVALLEPILIVIMGLIIAF 384

Query: 139 CVSTLVYFTSPGYMNV 154
            V +++      Y  +
Sbjct: 385 IVISVMLPMFDTYTQI 400


>gi|167824262|ref|ZP_02455733.1| bacterial type II secretion system protein F domain [Burkholderia
           pseudomallei 9]
 gi|167919042|ref|ZP_02506133.1| bacterial type II secretion system protein F domain [Burkholderia
           pseudomallei BCC215]
          Length = 246

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  ++ +R        P+ALD++V    AG  ++ A+  +  +      P+  EF    +
Sbjct: 86  LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 145

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G   + +++ M   + L  +    T +    Q G  ++++L  LSR  R  + +  
Sbjct: 146 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 205

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K +  ++  +   V+ +
Sbjct: 206 EEKAAKLAPKMTLPMMLFVMPTVALI 231


>gi|197121075|ref|YP_002133026.1| type II secretion system protein [Anaeromyxobacter sp. K]
 gi|196170924|gb|ACG71897.1| type II secretion system protein [Anaeromyxobacter sp. K]
          Length = 417

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/169 (11%), Positives = 46/169 (27%), Gaps = 6/169 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
             D           + AGLP+  A+ +I  Q+ +   R     V      G + ++++  
Sbjct: 77  TKDLLVFTRQFSVMIDAGLPLVQALDIIATQADNAEFRKVLSTVKVKVESGSTFADALGE 136

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +             +    ++GG L   L  L   +   + +  +V+   +       
Sbjct: 137 HPK-----VFDELFVQLVRAGEIGGILDTILQRLGAYIEKNEKLSRRVKGAMVYPAIVLT 191

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           +   +   +   V  T                   +  +        + 
Sbjct: 192 VAVGVVAVLIAFVVPTFEKMFKDFGGAMPAPTQFLIDISHGFRNYWFVY 240



 Score = 40.9 bits (94), Expect = 0.085,   Method: Composition-based stats.
 Identities = 12/130 (9%), Positives = 41/130 (31%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+P+ DA+ ++   + +    +    +        +SE  +        
Sbjct: 286 FTRTLGTMLSSGVPILDALEIVAKSAGNRTIEKGILYVR-----AKISEGKNIAGPLAET 340

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +        +    +  G +   L  ++    D  ++        +E     ++ G++ F
Sbjct: 341 KVFPAMVVQMIGVGEATGAMDAMLNKIADFYDDEVDVAVGALTSMIEPLMMVFLGGTVGF 400

Query: 139 CVSTLVYFTS 148
            +  +     
Sbjct: 401 FMIAMYMPIF 410


>gi|28896909|ref|NP_796514.1| general secretion pathway protein F [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153839995|ref|ZP_01992662.1| general secretion pathway protein F [Vibrio parahaemolyticus
           AQ3810]
 gi|260365904|ref|ZP_05778398.1| general secretion pathway protein F [Vibrio parahaemolyticus K5030]
 gi|260877809|ref|ZP_05890164.1| general secretion pathway protein F [Vibrio parahaemolyticus
           AN-5034]
 gi|260895542|ref|ZP_05904038.1| general secretion pathway protein F [Vibrio parahaemolyticus
           Peru-466]
 gi|260902566|ref|ZP_05910961.1| general secretion pathway protein F [Vibrio parahaemolyticus
           AQ4037]
 gi|28805117|dbj|BAC58398.1| general secretion pathway protein F [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149746472|gb|EDM57475.1| general secretion pathway protein F [Vibrio parahaemolyticus
           AQ3810]
 gi|308088542|gb|EFO38237.1| general secretion pathway protein F [Vibrio parahaemolyticus
           Peru-466]
 gi|308089749|gb|EFO39444.1| general secretion pathway protein F [Vibrio parahaemolyticus
           AN-5034]
 gi|308109718|gb|EFO47258.1| general secretion pathway protein F [Vibrio parahaemolyticus
           AQ4037]
 gi|308113481|gb|EFO51021.1| general secretion pathway protein F [Vibrio parahaemolyticus K5030]
 gi|328471684|gb|EGF42561.1| general secretion pathway protein F [Vibrio parahaemolyticus 10329]
          Length = 405

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/173 (9%), Positives = 53/173 (30%), Gaps = 6/173 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             +       +   V++G+P+ + +  +  Q+  P        + ++             
Sbjct: 64  TAELALITRQLSTLVQSGMPLEECLRAVSEQAEKPRIRTMIAAVRSKVT----EGYPLAD 119

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G+L   L  L+  + +R+ M++K+    +        
Sbjct: 120 SLGDYPHVFDELFRSMVAAGEKSGHLDTVLERLAEYVENRQKMRSKLLQAMIYPVVLVVF 179

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMI 183
             ++   +   V       +  +  +       LL  +      G+++  +++
Sbjct: 180 AVAIVSFLLATVVPKIIEPIIQMGQELPQSTQFLLAASEFVQEWGLIIFAVLV 232


>gi|301064212|ref|ZP_07204655.1| type IV fimbrial assembly protein PilC family protein [delta
           proteobacterium NaphS2]
 gi|300441657|gb|EFK05979.1| type IV fimbrial assembly protein PilC family protein [delta
           proteobacterium NaphS2]
          Length = 313

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/171 (11%), Positives = 58/171 (33%), Gaps = 4/171 (2%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           +   A   +   + AG+ +  A+  ++ Q S+P      RV+      ++   +      
Sbjct: 70  EVSVATRQLAILLGAGITLVAALEAMLMQVSNPAFK---RVLAQTKESVN-EGNSLAHAL 125

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
               +  S     +    +  G+L   L  L+ +    + ++ +++A        + +  
Sbjct: 126 GRHPRVFSDVYINLVRAGEASGSLELVLHRLADLSEQEQALRGRLKAAMAYPFLMSCVGV 185

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            + F +   V        N +        ++ +  +  L+    + L++  
Sbjct: 186 VVVFFLVAFVVPNVTRIFNEMHQALPLPTVILIGISHFLMKFWWLVLLVTI 236


>gi|196250150|ref|ZP_03148844.1| type II secretion system protein [Geobacillus sp. G11MC16]
 gi|196210334|gb|EDY05099.1| type II secretion system protein [Geobacillus sp. G11MC16]
          Length = 403

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 54/171 (31%), Gaps = 6/171 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
             F   L      VRAG+ + D+V ++  Q+    +      + ++   G  LS + +R 
Sbjct: 63  QHFVIFLRQFATLVRAGVTIVDSVHILAEQTESKSLARALSDIEQSLRGGNPLSTAAARH 122

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R  P          +    +  G L E L  L+         + K+ +      A A I
Sbjct: 123 PRLFP-----SLFVNMVRAGEASGTLDETLDRLADHFEKMHRTRQKIVSALAYPIAIAII 177

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             ++   +   V             +        +  + ++       +++
Sbjct: 178 ATAVVIFLLVAVVPAFVEMFADFHAELPAITKFVLKTSDVMQHYWWAMVLL 228


>gi|86147848|ref|ZP_01066154.1| Type II secretory pathway, component PulF [Vibrio sp. MED222]
 gi|85834375|gb|EAQ52527.1| Type II secretory pathway, component PulF [Vibrio sp. MED222]
          Length = 407

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/165 (10%), Positives = 45/165 (27%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
           +        +    +AG+P+  ++  +     +  ++     V+     G  L+      
Sbjct: 67  EVLVLFCRQLYSLTKAGVPLLRSMKGLTQHCENKQLKVALEEVVAELTNGRGLA-----A 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              M  +  S     +    +  G L +AL  L+         + +++            
Sbjct: 122 SMQMHPKVFSSLFVSMISVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITF 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           I    F ++  V             D      + +  +   +   
Sbjct: 182 ITIAMFVLNIFVIPQFSSMFARFGVDLPLPTRILMGMSEFFVNYW 226



 Score = 39.3 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 10/132 (7%), Positives = 38/132 (28%), Gaps = 5/132 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                      ++AG+P++ ++++      +         +  Q +  ++    +     
Sbjct: 272 LSRFSRTFALMLKAGVPLNQSLSLSAEALDNRFLE-----LRVQGMKSAIEAGSTVSSTA 326

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
           +  +  +     +    +  G + E L  ++       +   K     +E      + G 
Sbjct: 327 INSEIFTPLVIQMISVGEETGRIDELLLEVADFYDREVDYDLKTLTARIEPILLTIVAGM 386

Query: 136 LPFCVSTLVYFT 147
           +      +    
Sbjct: 387 VLVLALGIFLPM 398


>gi|15799790|ref|NP_285802.1| type IV pilin biogenesis protein [Escherichia coli O157:H7 EDL933]
 gi|15829364|ref|NP_308137.1| type IV pilin biogenesis protein [Escherichia coli O157:H7 str.
           Sakai]
 gi|168752499|ref|ZP_02777521.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4113]
 gi|168755715|ref|ZP_02780722.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764861|ref|ZP_02789868.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4501]
 gi|168770427|ref|ZP_02795434.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776814|ref|ZP_02801821.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781992|ref|ZP_02806999.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4076]
 gi|168789634|ref|ZP_02814641.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC869]
 gi|168801439|ref|ZP_02826446.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC508]
 gi|195938213|ref|ZP_03083595.1| type IV pilin biogenesis protein [Escherichia coli O157:H7 str.
           EC4024]
 gi|208808762|ref|ZP_03251099.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812868|ref|ZP_03254197.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820726|ref|ZP_03261046.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397106|ref|YP_002268712.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4115]
 gi|217325515|ref|ZP_03441599.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           TW14588]
 gi|254791241|ref|YP_003076078.1| type IV pilin biogenesis protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|261226861|ref|ZP_05941142.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255265|ref|ZP_05947798.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291280931|ref|YP_003497749.1| Type IV pilus assembly protein PilC [Escherichia coli O55:H7 str.
           CB9615]
 gi|12512815|gb|AAG54410.1|AE005187_3 putative integral membrane protein involved in biogenesis of
           fimbriae, protein transport, DNA uptake [Escherichia
           coli O157:H7 str. EDL933]
 gi|13359566|dbj|BAB33533.1| putative integral membrane protein HofC [Escherichia coli O157:H7
           str. Sakai]
 gi|187767814|gb|EDU31658.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4196]
 gi|188013667|gb|EDU51789.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4113]
 gi|189000460|gb|EDU69446.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4076]
 gi|189357065|gb|EDU75484.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4401]
 gi|189360687|gb|EDU79106.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365208|gb|EDU83624.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370836|gb|EDU89252.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC869]
 gi|189376381|gb|EDU94797.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC508]
 gi|208728563|gb|EDZ78164.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734145|gb|EDZ82832.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740849|gb|EDZ88531.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158506|gb|ACI35939.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4115]
 gi|209746384|gb|ACI71499.1| putative integral membrane protein HofC [Escherichia coli]
 gi|209746386|gb|ACI71500.1| putative integral membrane protein HofC [Escherichia coli]
 gi|209746388|gb|ACI71501.1| putative integral membrane protein HofC [Escherichia coli]
 gi|209746390|gb|ACI71502.1| putative integral membrane protein HofC [Escherichia coli]
 gi|209746392|gb|ACI71503.1| putative integral membrane protein HofC [Escherichia coli]
 gi|217321736|gb|EEC30160.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           TW14588]
 gi|254590641|gb|ACT70002.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli O157:H7 str. TW14359]
 gi|290760804|gb|ADD54765.1| Type IV pilus assembly protein PilC [Escherichia coli O55:H7 str.
           CB9615]
 gi|320190373|gb|EFW65023.1| Type IV fimbrial assembly protein PilC [Escherichia coli O157:H7
           str. EC1212]
 gi|320642143|gb|EFX11494.1| type IV pilin biogenesis protein [Escherichia coli O157:H7 str.
           G5101]
 gi|320647506|gb|EFX16301.1| type IV pilin biogenesis protein [Escherichia coli O157:H- str.
           493-89]
 gi|320652840|gb|EFX21078.1| type IV pilin biogenesis protein [Escherichia coli O157:H- str. H
           2687]
 gi|320658229|gb|EFX25958.1| type IV pilin biogenesis protein [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320663538|gb|EFX30822.1| type IV pilin biogenesis protein [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320668850|gb|EFX35645.1| type IV pilin biogenesis protein [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326345176|gb|EGD68919.1| Type IV fimbrial assembly protein PilC [Escherichia coli O157:H7
           str. 1125]
 gi|326346970|gb|EGD70704.1| Type IV fimbrial assembly protein PilC [Escherichia coli O157:H7
           str. 1044]
          Length = 400

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 55/182 (30%), Gaps = 22/182 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  R ++ +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQRAQRQLTDKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +   G +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGIMLTIANKLLM 235

Query: 180 RL 181
           R 
Sbjct: 236 RR 237


>gi|147919599|ref|YP_686661.1| putative type II secretion system protein [uncultured methanogenic
           archaeon RC-I]
 gi|110622057|emb|CAJ37335.1| putative bacterial type II secretion system protein [uncultured
           methanogenic archaeon RC-I]
          Length = 683

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 58/148 (39%), Gaps = 3/148 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  K   + P+ L  +  +   G+ ++ ++ +I   +   +  E +++ +    G  +S 
Sbjct: 456 RERKIASEMPDFLKKLASTNETGMTLTQSINLIANSNFGTLSKEVQKIHKDLQWGTDVST 515

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++ R    +     +   T+I+  S+  G++ + L   +   R  + M+ +     +   
Sbjct: 516 ALKRFANSLRTSSSTRVITLITKASESSGDIKDVLNIAANDARANELMRKERFDGML--- 572

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
               II          VY  +  ++ V+
Sbjct: 573 IYVVIIFISFLVFLYCVYTLTSSFIPVM 600



 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 58/183 (31%), Gaps = 6/183 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQHLG 62
              R ++     P+A+  +    + G  +   +  +     +   V  E   VI      
Sbjct: 126 ASDRKSRINKGLPSAVTFMYAMSKGGADIITILRSLYEAETTYGEVSREIGFVIRDMDYF 185

Query: 63  L-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
              L  ++       P   +    + +      GG+++  L N     R R  +  K   
Sbjct: 186 GNDLRAALINCANQTPSDLLQDLLSNLLSVIDSGGDVTTYLNNKVEQYRMRIALDQKSFL 245

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA-FMLIGIMVMR 180
             +   A +++   +   +  ++  +    MN     P    ++  A      +  +VM 
Sbjct: 246 EILGLIAESYVTCFVAGPLFIIIMSSVMTIMN--GGSPMILYIIIYAVLPLGSVIFIVMI 303

Query: 181 LMI 183
            M+
Sbjct: 304 SMM 306


>gi|153950588|ref|YP_001399590.1| type II secretion system protein [Yersinia pseudotuberculosis IP
           31758]
 gi|152962083|gb|ABS49544.1| type II secretion system protein [Yersinia pseudotuberculosis IP
           31758]
          Length = 277

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 4/157 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +K+ + KRT   L   P  +DI    V++G+ + +++     +           + +   
Sbjct: 117 IKNALTKRTNTLLKSLPFFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTK 176

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +     L  +I  +  Y P  E+  F + +      G  + E L +LS+ +R+ + +  +
Sbjct: 177 RAEINGLENAIKELQYYSPAIEMKMFCSTLQYSLSFGSTVYEQLTHLSQDMREMQLLMTE 236

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                +  K +  +   +      LV   SP  + +L
Sbjct: 237 ESISKLSTKLTLPLFLFILIPFVLLV--ISPSILELL 271


>gi|152985859|ref|YP_001350498.1| pilin biogenesis protein [Pseudomonas aeruginosa PA7]
 gi|150961017|gb|ABR83042.1| pilin biogenesis protein [Pseudomonas aeruginosa PA7]
          Length = 405

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 51/174 (29%), Gaps = 7/174 (4%)

Query: 8   RTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65
           R  K    D       +   + AG+P+  +  +I        +R     + +    G SL
Sbjct: 59  RGKKIKPMDIALFTRQLSTMMGAGVPLLQSFDIIGEGFDNPNMRKLVEEIKQEVASGNSL 118

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           + S+ +                +    +  G L   L  ++      +++KAK++     
Sbjct: 119 ANSLRKKPM-----YFDDLYCNLVDAGEQSGALETLLDRVATYKEKTESLKAKIRKAMTY 173

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             A   +   +   +   V             +      + +  +  L    ++
Sbjct: 174 PIAVVIVAVIVSAILLIKVVPQFQSVFEGFGAELPAFTQMVINISEFLQEWWLL 227



 Score = 39.7 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/128 (10%), Positives = 39/128 (30%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +  +  AG+P+ +A+  + G + + V            +   +S  +           
Sbjct: 277 RTLSTTFAAGVPLVEALDSVAGATGNVVFR-----NAVSRIKQDVSTGMQLNFSMRTTNV 331

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
               +  ++   +  G+L E L  ++    +  +         ME    A +   +   +
Sbjct: 332 FPSMAIQMAAIGEESGSLDEMLGKVAGFYEEEVDNAVDNLTTLMEPMIMAVLGVLVGGLI 391

Query: 141 STLVYFTS 148
             +     
Sbjct: 392 IAMYLPIF 399


>gi|75906599|ref|YP_320895.1| type II secretion system protein [Anabaena variabilis ATCC 29413]
 gi|75700324|gb|ABA20000.1| type II secretion system protein [Anabaena variabilis ATCC 29413]
          Length = 407

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/146 (11%), Positives = 52/146 (35%), Gaps = 6/146 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   V AG+ +   + V+  Q ++  ++     +      G++LS+++ +      
Sbjct: 72  FSRQLATLVNAGVAIVRGLGVLGDQCTNAKLKQALNDISNDVQSGVNLSDAMRKHPDCFD 131

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    ++GG L E L  L+++L D   ++ ++++          +  ++ 
Sbjct: 132 G-----LYVSMIQAGEVGGVLDEVLNRLAKLLEDMARLQNQLKSALAYPVVVGILATAIF 186

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHM 163
             ++  +          L  +     
Sbjct: 187 VGMTVFLIPIFAKIFVELGTELPALT 212


>gi|187250990|ref|YP_001875472.1| type II secretion system subunit F [Elusimicrobium minutum Pei191]
 gi|186971150|gb|ACC98135.1| Type II secretion system subunit [Elusimicrobium minutum Pei191]
          Length = 412

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 13/159 (8%), Positives = 52/159 (32%), Gaps = 9/159 (5%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                + +   +  G+P+  A+ ++   +    +    +++ +    G S   ++ +  +
Sbjct: 72  LAFFAEQLSTLISGGVPLVRAITLLGEHASDPNLGYVLQQIAKDIASGSSFYTALEKHPK 131

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                 +      +    ++GG L+  L  ++  ++ +  +++K+            +  
Sbjct: 132 TFDHIWL-----SLVQAGEVGGQLAGTLMQIAVYIKTQDAVRSKIITAVSYPAILFIMSV 186

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
                +   + F  P +  +          +  A   + 
Sbjct: 187 G---VLIYFIVFIVPTFATIFAESNMELPAITQAVLLIS 222


>gi|187926431|ref|YP_001892776.1| type II secretion system protein [Ralstonia pickettii 12J]
 gi|241665918|ref|YP_002984277.1| type II secretion system protein [Ralstonia pickettii 12D]
 gi|187728185|gb|ACD29349.1| type II secretion system protein [Ralstonia pickettii 12J]
 gi|240867945|gb|ACS65605.1| type II secretion system protein [Ralstonia pickettii 12D]
          Length = 329

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 64/147 (43%), Gaps = 5/147 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLSES 68
             D+ P  +D++      GL +  ++ VI  +       +  EF R  +    G S  ++
Sbjct: 176 MDDELPVMVDMLRLLQGVGLSIDQSLQVIANEFHGMLPVLAGEFGRANQQFASGRSREQT 235

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           + R+ R    +++    T+++   + GG + E L      L++ +  + K +   +  + 
Sbjct: 236 LLRIARLFDNEDLKGLITLLTQVDRFGGAVQEPLRQFGGRLQENRRARLKERVGKLTVQM 295

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  ++ +L   +  L+    PG+M V+
Sbjct: 296 TMIMVMTLLPAL--LIITAGPGFMGVM 320


>gi|38232935|ref|NP_938702.1| hypothetical protein DIP0314 [Corynebacterium diphtheriae NCTC
           13129]
 gi|38199193|emb|CAE48818.1| Putative membrane protein [Corynebacterium diphtheriae]
          Length = 248

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 65/181 (35%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
              +      +   +AL II   +R GL   DA+A +  + +             +    
Sbjct: 65  RRNRADRTTQEALSSALGIIAGDLRCGLGTWDALARVAQEPTTHAPLAAACAAAARRARA 124

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
             S +         +  +   + V  +    G +++  +  L   + DR   + + +A  
Sbjct: 125 GGSAADVLADYSHSIAGLQRVARVWKLSETHGISVAPLVEQLHNEIDDRLRHRDRTKAAL 184

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             A+A+A ++  LP     +        +  L+N+  G  LL V  A    G++  + +I
Sbjct: 185 QGAQATAIVLSLLPLFGLGMGIGLGAPVLAFLLNNAIGQTLLIVGTALQCAGLLWSQALI 244

Query: 184 N 184
            
Sbjct: 245 K 245


>gi|113867007|ref|YP_725496.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
 gi|113525783|emb|CAJ92128.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
          Length = 293

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 67/147 (45%), Gaps = 1/147 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           ++ + K+   +     P  LD +  SV AGL ++ A+   V +    P+R EF  V+   
Sbjct: 135 LRDVRKRNLLQVTRHLPVFLDFLTLSVEAGLNINGALLQAVEKGPEGPLRREFEHVLRDL 194

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             GLS ++++ RM   + ++EV+ F   +    ++G  L+  L   S   R  +  +A+ 
Sbjct: 195 KSGLSRADALRRMDDRLRVKEVTNFVGAVIQAERMGSGLAATLRFQSEQRRTERFQRAEK 254

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146
           QA+    K    ++  +      ++ F
Sbjct: 255 QAMEAPVKLIFPLVVFIFPVTFIVLGF 281


>gi|89899355|ref|YP_521826.1| general secretion pathway protein F [Rhodoferax ferrireducens T118]
 gi|89344092|gb|ABD68295.1| General secretion pathway protein F [Rhodoferax ferrireducens T118]
          Length = 411

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 65/183 (35%), Gaps = 14/183 (7%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65
           +R              +   V +GLP+  A+  +  ++  D        +    + G + 
Sbjct: 65  RRRVFSATGLAIWTRQLAGLVSSGLPLERALTSLSDEAERDNEHHLVALLRAEVNGGATF 124

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           ++++S+  R     E +     +    +  GNL   L  L+  L +++ +KAK+   ++ 
Sbjct: 125 AKALSQHPR-----EFTPIFIAVIGAGEQSGNLGLVLERLADDLEEQQALKAKLIGAALY 179

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI-----GIMVMR 180
                 +       V  LV +  P   +V     R   LL V            G +++ 
Sbjct: 180 PA---IVSLVAVVIVLFLVTYVVPQVAHVFAGSKRALPLLTVIMIGTSAFVRSYGWLMLV 236

Query: 181 LMI 183
            +I
Sbjct: 237 AII 239



 Score = 35.1 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 34/129 (26%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+  A+       S+       R      L L    +          
Sbjct: 280 FASTLAMLAAAGVPILKALQAAAETLSNRAM----RTDALDALVLVREGAPLASALAQKK 335

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +       + +   +  G L   L   ++ L      +A   A  +E      +   +  
Sbjct: 336 R-FPGLLAMFARLGEQTGQLPTMLQRAAKQLSVEVQRRAMQLATILEPLLIVVMGVVVML 394

Query: 139 CVSTLVYFT 147
            V  ++   
Sbjct: 395 IVLAVLMPI 403


>gi|25026855|ref|NP_736909.1| hypothetical protein CE0299 [Corynebacterium efficiens YS-314]
 gi|23492135|dbj|BAC17109.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 281

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 64/187 (34%), Gaps = 6/187 (3%)

Query: 3   HLIKKRTAKFLDD----FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
            L + RT++            L + + ++RAG P++DA+   +  ++    S     +  
Sbjct: 89  RLKRGRTSRVTRAQTTVLAGFLGLCIGNLRAGAPMADAMDHALAHTTGSTGSAGPTTVAL 148

Query: 59  QHLGLSLSESISRMVRYM--PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
                 +    S     +  P  ++    T+  V  + G  L   L  L   L  ++  +
Sbjct: 149 TAAARRVRSGGSGAAVLIDAPTMDLQRLGTIWEVSERHGIPLVRLLDQLKHRLEAQERHR 208

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
               A     +A+A I+  LP     +        +  L     G +LL         G 
Sbjct: 209 QASAAQLQGPQATAVILALLPLAGVLMGTAMGADPIGFLTGGGVGGILLITGVLLSAAGF 268

Query: 177 MVMRLMI 183
           ++   ++
Sbjct: 269 ILTEKIL 275


>gi|257453562|ref|ZP_05618852.1| pilin biogenesis protein [Enhydrobacter aerosaccus SK60]
 gi|257449020|gb|EEV23973.1| pilin biogenesis protein [Enhydrobacter aerosaccus SK60]
          Length = 407

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/178 (11%), Positives = 54/178 (30%), Gaps = 8/178 (4%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHL 61
             +KK       D    +  +   ++AG+P++ +  ++     +P   E    V      
Sbjct: 58  FQMKKSIKAI--DIAIFVRQLATMMKAGVPLTQSFEIVADALDNPSMKELVLSVKSEVES 115

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G + + ++ +  R             +    +  G L   L  ++      + +KAK++ 
Sbjct: 116 GSTFAAALRKHPR-----YFDDLFCSLVEAGEQSGALETMLERVATYKEKSELLKAKIKK 170

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
                 A   +   +   +   V        +    +      + V  +  +     +
Sbjct: 171 ALKYPIAVIVVAIIVTIILLVKVVPVFADLFHSFGAELPAFTQMVVNMSEWMQKWWWL 228


>gi|17549304|ref|NP_522644.1| putative tight adherence TadC related transmembrane protein
           [Ralstonia solanacearum GMI1000]
 gi|17431556|emb|CAD18234.1| probable pilus assembly tadc transmembrane protein [Ralstonia
           solanacearum GMI1000]
          Length = 326

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 64/146 (43%), Gaps = 5/146 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLSES 68
             D+ P  +D++      GL +  ++ VI  +       +  EF R  +    G S  ++
Sbjct: 170 LDDELPVMVDMLRLLQGVGLSIDQSLQVIANEFHGMLPVLADEFGRANQQFASGRSREQT 229

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           + R+ R    +++    T+++   + GG + E L      L++ +  + K +   +  K 
Sbjct: 230 LLRIARLFDNEDLKGLITLLTQVDRFGGAVQEPLRQFGLRLQENRRSRLKERVGKLTVKM 289

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +  ++ +L   +  L+    PG+M+V
Sbjct: 290 TVVMVLTLLPAL--LIITAGPGFMSV 313


>gi|310823682|ref|YP_003956040.1| type IV pilin [Stigmatella aurantiaca DW4/3-1]
 gi|309396754|gb|ADO74213.1| Type IV pilin [Stigmatella aurantiaca DW4/3-1]
          Length = 413

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/166 (11%), Positives = 49/166 (29%), Gaps = 8/166 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                   + AGLP+   + ++  Q  +P  +     +      G + ++++    +   
Sbjct: 79  FTRQFATMIDAGLPLVQCLDILGSQMENPAFKKVVFAIKGKVEQGSTFADALKDHPK--- 135

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    ++GG L   L  L+      + +K KV++          +   + 
Sbjct: 136 --VFDELFVQLCAAGEVGGILDTILNRLAAYREKAEKLKGKVKSAMTYPSVVICVAIGVT 193

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             +   V            ++        V  +  L     +  M+
Sbjct: 194 ALLLLKVTPVFEKMFKDFGSELPAPTQFVVDMSNWLQA--WIFHMV 237



 Score = 37.4 bits (85), Expect = 0.81,   Method: Composition-based stats.
 Identities = 12/130 (9%), Positives = 37/130 (28%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+P+ DA+ V    + +    E    +        ++E  +     +  
Sbjct: 282 FTRTLGTMISSGVPILDALDVTAKTAGNRTIEEAIYYVR-----GKIAEGKNIAGPLLET 336

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G +   L  ++    D  +         +E     ++ G +  
Sbjct: 337 GVFPSMVVQMIGVGEATGAMDAMLNKIADFYDDEVDAAVAGLTAMIEPLLMVFLGGVVGG 396

Query: 139 CVSTLVYFTS 148
            +  +     
Sbjct: 397 FLIAMYLPIF 406


>gi|256823528|ref|YP_003147491.1| general secretion pathway protein F [Kangiella koreensis DSM 16069]
 gi|256797067|gb|ACV27723.1| general secretion pathway protein F [Kangiella koreensis DSM 16069]
          Length = 407

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 57/173 (32%), Gaps = 6/173 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   V+A LP+ +A+  +  Q+    V+S    V      G +L++ ++  
Sbjct: 67  ADLALVTRQLATLVKAALPIEEALKAVADQTDKGKVKSIILGVRAKVLEGHTLADGMTEF 126

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    +     +    +  G+L + L  L+     R+ + +KV A  +       +
Sbjct: 127 PN-----VFNELYRSMVAAGERAGHLDKVLNRLADYTERRQKINSKVSAAMVYPAVLILV 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              +   +              +  +      + +  +  +I   +  L++  
Sbjct: 182 AVGVVSGLMVFAVPKVVEQFTHMSQELPVLTKILIGISDFVINYGLYTLILLI 234


>gi|55377349|ref|YP_135199.1| hypothetical protein rrnAC0464 [Haloarcula marismortui ATCC 43049]
 gi|55230074|gb|AAV45493.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 815

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 60/161 (37%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ +  +R ++  D  P+ L+ +     AG+ V +++  + G     +  E  R+     
Sbjct: 467 VRFIYTQRLSRIEDATPDLLERLASLNEAGMTVVESLRRVRGSDIGVLTEEMHRIWADIR 526

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G ++ +++ R  R +    V+   T+++      G L       +   R    +K + +
Sbjct: 527 MGANVDDALVRFGRRVQTTAVTRIVTLLTHAMHASGQLGPVFRIAATQSRADLRLKRRRR 586

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
              +      ++   +   +   V       +   +  P G
Sbjct: 587 QQMLTYLVVIYVAFLVFLVIIVAVQEVLVPSLPSSVPTPAG 627



 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 57/181 (31%), Gaps = 4/181 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIET 58
           +K+    R+    +     +  +    R G+  SD + V+    +       E    +  
Sbjct: 157 LKNQADVRSRNIDEGMARTIAFMYALSRGGMSFSDVMRVLARNQEIYGDTAREVGVAVRE 216

Query: 59  QHLGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
             L    +  ++  + R  P ++   F   +S   Q G +L+  L       ++    + 
Sbjct: 217 MDLFGRDMITALEHVSRRTPSEQFKTFIENLSSVLQSGQSLAPFLREQYERHQEEAAERQ 276

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +     +   A A++   +   +  +      G            M+  +      +G M
Sbjct: 277 EDLLERLATVAEAYVTVFVAAVLFLMTILLVFGLTTTDTLWLL-QMMAYLVIPLANVGFM 335

Query: 178 V 178
           V
Sbjct: 336 V 336


>gi|220933414|ref|YP_002512313.1| general secretion pathway protein F [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994724|gb|ACL71326.1| general secretion pathway protein F [Thioalkalivibrio sp. HL-EbGR7]
          Length = 404

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/171 (12%), Positives = 49/171 (28%), Gaps = 6/171 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           D       +   VR+GLP+ +A+  +  QS  P        +        +         
Sbjct: 66  DLALLTRQLATLVRSGLPIEEALGTVARQSEKPRIRSMLMAVR----TRVMEGHTLARGL 121

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                             +  G+L   L  L+    +R+ M+ K+Q           +  
Sbjct: 122 SDFPHVFPDIYRTTVEAGEQSGHLEVVLERLADYTENRQQMRQKIQLALFYPAILTAMAL 181

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183
            +   +   V          +  +       L+ V+      G+ ++  ++
Sbjct: 182 LVTIALLAYVVPEVVQVFEGIGQELPWLTRTLIAVSDGLRDYGLWMLLGLV 232



 Score = 37.8 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 41/131 (31%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +     +G+ V +A+ +     +S P+R   + V +    G  +  ++ R   + P
Sbjct: 273 FARTLSILSASGVSVLEALRISAQVVASLPMRDAIQTVAQRVREGSGIGNALERTGYFPP 332

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +  +    +  G+L   L   +         +  +    +E      +   + 
Sbjct: 333 ------ITVHLIKSGEASGSLDAMLERAAVNQERELEARIGMIMGILEPVLILVMGLVVL 386

Query: 138 FCVSTLVYFTS 148
             V  ++    
Sbjct: 387 VIVLAILLPIF 397


>gi|163856391|ref|YP_001630689.1| hypothetical protein Bpet2080 [Bordetella petrii DSM 12804]
 gi|163260119|emb|CAP42420.1| putative membrane protein [Bordetella petrii]
          Length = 290

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 50/135 (37%), Gaps = 1/135 (0%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISR 71
             + P  LD++   + +GL +  A+          P+R E    +     G+  + ++  
Sbjct: 145 GRELPFVLDMMTLCIESGLGLHGALQQAAQHGPPGPLRQELHHALADMRAGMPRAAALKA 204

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +        V  +   ++    LG +L   L   +   R  +  +A+  A+    K    
Sbjct: 205 LADRADSPAVRSWIAALTQADSLGMSLGAVLRGHAAQCRTDRFQRAEKLAMEAPVKMLLP 264

Query: 132 IIGSLPFCVSTLVYF 146
           +IG +  C   ++ F
Sbjct: 265 LIGCIFPCTFIVLAF 279


>gi|261349609|ref|ZP_05975026.1| putative bacterial type II secretion system protein F domain
           protein [Methanobrevibacter smithii DSM 2374]
 gi|288861567|gb|EFC93865.1| putative bacterial type II secretion system protein F domain
           protein [Methanobrevibacter smithii DSM 2374]
          Length = 305

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 69/170 (40%), Gaps = 2/170 (1%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           + P AL  +   ++AG  + D +  +   +   +  EF+RV++    G S  +++  M  
Sbjct: 132 ELPYALRHMATELKAGKGLHDTLLTVSIANYGSLSGEFKRVLKEIKYGKSSEDALMEMSL 191

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK--ASAWI 132
            +  + +S     I    ++GGNL+ +L  ++  +     +K K  +  +        +I
Sbjct: 192 RVSSEGLSRAVHQIVGTLRVGGNLANSLNVIAEDISFDMQIKLKEYSQKLNGFILIYTFI 251

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
               P  +  ++   S    +++  +    M +      ++   + ++ M
Sbjct: 252 AILAPVIILIMLMAASTVVGDIVSEEMVFIMYMFFFPLIVVFMALFIKRM 301


>gi|27364825|ref|NP_760353.1| MSHA biogenesis protein MshG [Vibrio vulnificus CMCP6]
 gi|37681127|ref|NP_935736.1| MSHA biogenesis protein MshG [Vibrio vulnificus YJ016]
 gi|320155215|ref|YP_004187594.1| MSHA biogenesis protein MshG [Vibrio vulnificus MO6-24/O]
 gi|27360970|gb|AAO09880.1| MSHA biogenesis protein MshG [Vibrio vulnificus CMCP6]
 gi|37199878|dbj|BAC95707.1| MSHA biogenesis protein MshG [Vibrio vulnificus YJ016]
 gi|319930527|gb|ADV85391.1| MSHA biogenesis protein MshG [Vibrio vulnificus MO6-24/O]
          Length = 406

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/165 (11%), Positives = 50/165 (30%), Gaps = 6/165 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74
                  +    +AG+P+  ++  +V    +  +++    V+     G SLS        
Sbjct: 68  LVLFCRQLYSLTKAGVPLLRSMRGLVQNCENKQLKAALEEVVAELTNGRSLS-----ASM 122

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            +  +  S     +    +  G L +AL  L+         + +++            I 
Sbjct: 123 QLHSKVFSPLFVSMIHVGENTGRLDQALLQLANYYEQELETRKRIKTAMRYPTFVISFIV 182

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
              F ++  V        +    D      + +  +   +   ++
Sbjct: 183 VAMFILNVKVIPQFASMFSRFGVDLPLPTRILIGMSEFFVNYWML 227



 Score = 41.6 bits (96), Expect = 0.053,   Method: Composition-based stats.
 Identities = 11/135 (8%), Positives = 34/135 (25%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         ++AG+P++ ++A+      +              +   +       
Sbjct: 268 RAQLSRFSRTFALMLKAGVPLNQSLALSAEAMGNRYLELKIL-----KMKADIEAGSQVS 322

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           V  +     +     +    +  G + E L  ++       +   K     +E      +
Sbjct: 323 VTAINSGIFTPLVIQMISVGEETGRIDELLMEVADFYDREVDYDLKTLTARIEPILLVIV 382

Query: 133 IGSLPFCVSTLVYFT 147
            G +      +    
Sbjct: 383 AGMVLVLALGIFLPM 397


>gi|239929828|ref|ZP_04686781.1| hypothetical protein SghaA1_16497 [Streptomyces ghanaensis ATCC
           14672]
          Length = 290

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 2/162 (1%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   VRAG     A+   V   S  +      V+     G  + E+++   +    + + 
Sbjct: 124 LAGEVRAGRQPGAALLTAVRD-SGGLGDAQAAVLAAARFGGDVPEALAAAAQP-GAEGLR 181

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
             +    V    G  L++ L  L   LR  ++ +A ++A    A+A+A ++  LP     
Sbjct: 182 GLAACWRVAVDQGAGLADGLDRLEAALRAERDRRADLRAQLAGARATAVMLAGLPAVGLA 241

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           L        + +L++ P G   L V      +G+     ++ 
Sbjct: 242 LGAALGADPLRILLHTPSGLGCLAVGGVLEGLGLWWALRIMR 283


>gi|54310290|ref|YP_131310.1| putative Type IV pilin biogenesis protein [Photobacterium profundum
           SS9]
 gi|46914731|emb|CAG21508.1| putative Type IV pilin biogenesis protein [Photobacterium profundum
           SS9]
          Length = 406

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/194 (11%), Positives = 56/194 (28%), Gaps = 15/194 (7%)

Query: 3   HLIKKRT----AKFLDDFP-----NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR 53
             IK+R     +K  +             +   + +G+PV  ++ +I     +       
Sbjct: 46  KKIKRRKPSTFSKLRNQMKPEDITETTRQLATMIESGVPVVQSLKLIA----NSHHKAEV 101

Query: 54  RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
           R   +Q      + +               F   +    +  G+L E  + ++      +
Sbjct: 102 RATLSQVTMQVEAGASLSKALKTSSPLFDDFYCDLVATGEQTGHLGEVFSRIATYREKGE 161

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
            M+ KV    +           +   +   V        +    +      L + A+  L
Sbjct: 162 IMRKKVIKAMIYPTMVTLTAVIVTVMMLIFVIPQFASIFSSFGAELPLFTQLVINASDFL 221

Query: 174 I--GIMVMRLMINF 185
           I  G+     +++ 
Sbjct: 222 IAHGLYFTIGLVSI 235


>gi|148545924|ref|YP_001266026.1| type II secretion system protein [Pseudomonas putida F1]
 gi|148509982|gb|ABQ76842.1| type II secretion system protein [Pseudomonas putida F1]
          Length = 402

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 53/172 (30%), Gaps = 12/172 (6%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLS 64
           K+R      D       +   ++AG+P+  A  V+          +   R+ +    GL 
Sbjct: 58  KRRQKA---DPAGFSRQLATLLKAGVPLLQAFEVMGRSGCDAAQAALLERLKQDVASGLG 114

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L++++ R                +    +  G L   L  L+ +L  R+ +  KV+   +
Sbjct: 115 LADALQRHPA-----WFDALYCNLVRVGEQSGTLDRQLEQLAGMLEQRRVLHKKVRKAMI 169

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
                           + L+    P + ++                 +  G+
Sbjct: 170 YPLLLLLTGLG---VSAILLLEVIPKFESMFSGMGAALPAFTQWVINLSTGL 218



 Score = 38.2 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 15/137 (10%), Positives = 42/137 (30%), Gaps = 7/137 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISR 71
                     +  S  AG+P+ DA+  +   +   +      R+ +    G  L+++++ 
Sbjct: 266 QAALARFARSLATSYGAGVPLLDALGTVARVTGGDLHEQAVLRLRQGMANGQGLNQAMAG 325

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              + P          ++   +  G L + L   +    ++ +         +E      
Sbjct: 326 EPLFPP------LLVQLTAIGESSGTLDQMLEKAASHYEEQVSQALDQLTSLLEPAIVLI 379

Query: 132 IIGSLPFCVSTLVYFTS 148
           +   +   V  +     
Sbjct: 380 LGLLVGGLVVAMYLPIF 396


>gi|257485210|ref|ZP_05639251.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331010891|gb|EGH90947.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 403

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/181 (11%), Positives = 56/181 (30%), Gaps = 15/181 (8%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             D  +    +   + AGLP+ +A+   V Q+                +   +  + +  
Sbjct: 63  DADLASVTRQLASLLSAGLPLDEALGATVEQAE-RQHIIQTLSAIRTDVRSGMRLAEALA 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R     +       +    +  G+L+  +  L+  + +R  ++ K+    +       +
Sbjct: 122 ARPRDFPD---IYRALIGAGEESGDLARVMERLADYIEERNGLRGKILTAFIYPGVVGLV 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-----------IGIMVMRL 181
             ++   + + V        +    D  G  L  +AA+  +           +  +    
Sbjct: 179 SIAIVIFLLSYVVPQIVSAFSQARQDLPGLTLAMLAASDFIRAWGLVCLGVLLAALWGWR 238

Query: 182 M 182
           +
Sbjct: 239 I 239



 Score = 34.3 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 37/129 (28%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+  A+       S+      R  +        + E ++  V     
Sbjct: 272 FASTLAILGAAGVPLLRALDAARQTLSND-----RLSLAVSEATSRVREGVNLAVALRME 326

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +        +    +  G+L   L   ++ L      +A      +E      + G +  
Sbjct: 327 KVFPPLLIHLIASGEKTGSLPPMLDRAAQTLSRDIERRALGMTALLEPLMIVIMGGVVLV 386

Query: 139 CVSTLVYFT 147
            V  ++   
Sbjct: 387 IVMAVMLPI 395


>gi|76802644|ref|YP_330739.1| transmembrane protein (type II secretion system proteins TadC)
           [Natronomonas pharaonis DSM 2160]
 gi|76558509|emb|CAI50101.1| transmembrane protein (homolog 2 to type II secretion system
           proteins TadC) [Natronomonas pharaonis DSM 2160]
          Length = 671

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 58/151 (38%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +   K  D   + L  +  +   G+ + +++ V+   SS  +  EFR +    + G SL 
Sbjct: 448 RSRRKITDSLSDDLRKLSSANDTGMTLLESIRVVADTSSGRLAEEFRVMYAKVNYGTSLK 507

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++        +  ++    +IS   +    +++ L+  ++   ++ +++   ++ +   
Sbjct: 508 TALREFNNKYHIPRLARTLKLISKAQEASSQITQVLSTAAQASENQDDIERNRKSRTRMQ 567

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
                +       V  L+       M  L++
Sbjct: 568 MVIIIMTYVTLLGVMALLKVEFLDTMAGLVD 598



 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 57/181 (31%), Gaps = 7/181 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHLG 62
              R  +      +++  +      GL   + +  +     +   V  EF+ ++      
Sbjct: 139 ADARKREINVLLSDSVSFMYALSVGGLNQLEILEAMARADDTYGEVSQEFQSIVLETEYF 198

Query: 63  -LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                 +I       P +E+S F T +      GG++ + L +           + +   
Sbjct: 199 DTDYRTAIRNQAMQTPSEELSQFLTDMLSIINSGGDMEQFLEDQKEKHMRTSKQEQETVL 258

Query: 122 LSMEAKASAWI----IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
            ++E     ++       L   +  ++         +L     G + L  A   +L+  +
Sbjct: 259 ETLELFGEMYMTLSLFPLLLIIIVVIMSMLGEAQDALLYGTVYGLIPLIGAGFLVLVSTV 318

Query: 178 V 178
           V
Sbjct: 319 V 319


>gi|160901134|ref|YP_001566716.1| general secretion pathway protein F [Delftia acidovorans SPH-1]
 gi|160366718|gb|ABX38331.1| general secretion pathway protein F [Delftia acidovorans SPH-1]
          Length = 408

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 56/159 (35%), Gaps = 9/159 (5%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                  +   V +GLP+  A+A +  ++           +    + G + + ++++  R
Sbjct: 71  LTVWTRQMAGLVGSGLPIERALAALSEEADDPRQHHLVAALRAEVNAGSTFARALAQHPR 130

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                E S     +    +  G+L   L  L+  L  R+ +++K+   ++       +  
Sbjct: 131 -----EFSDIYCAVIGAGEASGSLGPVLERLADDLESRQALQSKLIGAALYPA---IVTL 182

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
                V  LV +  P   +V     R    L VA   + 
Sbjct: 183 VAIVIVLFLVSYVVPQVASVFAGTKRALPWLTVAMLALS 221


>gi|90581087|ref|ZP_01236887.1| putative general secretion pathway protein F [Vibrio angustum S14]
 gi|90437783|gb|EAS62974.1| putative general secretion pathway protein F [Vibrio angustum S14]
          Length = 408

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 58/167 (34%), Gaps = 11/167 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
            ++       +   V+A +P+ + +  +  Q+    +++    V      G +L++S++ 
Sbjct: 67  TNELALITRQLATLVQASMPLEECIKAVAEQNEKPRLKNILLAVRSRVVEGYTLADSMAE 126

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    +  G+L   L  L+    +R+ M++K+Q   +       
Sbjct: 127 YP-----HIFDQLFRAMVAAGEKSGHLDTILNRLADYTENRQQMRSKLQQAMIYPI---M 178

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +       V+ L+    P  ++  +    G  L  +    +     V
Sbjct: 179 LTLVAVSVVAFLLATVVPKIVDQFVQ--MGQQLPTITEVLLAASNFV 223


>gi|320328776|gb|EFW84775.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330881976|gb|EGH16125.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 403

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 62/182 (34%), Gaps = 17/182 (9%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
             D  +    +   + AGLP+ +A+   V Q+    +      +      G+ L+E+++ 
Sbjct: 63  DADLASVTRQLASLLSAGLPLDEALGATVEQAERQHIIQTLGAIRTDVRSGMRLAEALAA 122

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             R     +       +    +  G+L+  +  L+  + +R  ++ K+    +       
Sbjct: 123 RPR-----DFPDIYRALIGAGEESGDLARVMERLADYIEERNGLRGKILTAFIYPGVVGL 177

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-----------IGIMVMR 180
           +  ++   + + V        +    D  G  L  +AA+  +           +  +   
Sbjct: 178 VSIAIVIFLLSYVVPQIVSAFSQARQDLPGLTLAMLAASDFIRAWGLVCLGVLLAALWGW 237

Query: 181 LM 182
            +
Sbjct: 238 RI 239



 Score = 34.3 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 37/129 (28%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+  A+       S+      R  +        + E ++  V     
Sbjct: 272 FASTLAILGAAGVPLLRALDAARQTLSND-----RLSLAVSEATSKVREGVNLAVALRME 326

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +        +    +  G+L   L   ++ L      +A      +E      + G +  
Sbjct: 327 KVFPPLLIHLIASGEKTGSLPPMLDRAAQTLSRDIERRALGMTALLEPLMIVIMGGVVLV 386

Query: 139 CVSTLVYFT 147
            V  ++   
Sbjct: 387 IVMAVMLPI 395


>gi|83589204|ref|YP_429213.1| hypothetical protein Moth_0336 [Moorella thermoacetica ATCC 39073]
 gi|83572118|gb|ABC18670.1| hypothetical protein Moth_0336 [Moorella thermoacetica ATCC 39073]
          Length = 316

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 69/183 (37%), Gaps = 1/183 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            ++ R  K ++    A+ I          V  A+++   +   P+    R+       G 
Sbjct: 134 RVQNRRNKIIEQLAAAVRIFAAEFGDTPQVPRALSITAQKVPAPLGDILRQADTDLAAGK 193

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S+ +    +++ +  +    F  ++ +       +      L+  + + + +  K  +  
Sbjct: 194 SIDDVCLYLMKELDFEYGRMFVQLLRLAWD-DAAVRPLFTRLAGRIANLQGLIYKNASGM 252

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             ++     + +L      L+    P     L+ +P G +L+ V    +L+G+++ R++ 
Sbjct: 253 AYSRFMGMFVNALILPEFLLMRSVVPETGYFLVYNPLGRLLVVVCFLSILVGMILDRVLS 312

Query: 184 NFD 186
             +
Sbjct: 313 GVE 315


>gi|93005087|ref|YP_579524.1| general secretion pathway protein F [Psychrobacter cryohalolentis
           K5]
 gi|92392765|gb|ABE74040.1| General secretion pathway protein F [Psychrobacter cryohalolentis
           K5]
          Length = 400

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 58/173 (33%), Gaps = 13/173 (7%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESISRMV 73
           +       +   + AG+P+ + +A +  QS           + +  L   SL+ ++ +  
Sbjct: 63  ELALLTRQLSVLLAAGIPLEETLAAVAKQSPKTHIKSLILAVRSHVLEGLSLARALQQAA 122

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
            + P               +  G+L   L  L+    +R  ++ K+Q   +       ++
Sbjct: 123 SFPP------LYIATIAAGEKSGHLDLILNQLADYTENRFALQKKIQGAMVYPI---VLM 173

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF---MLIGIMVMRLMI 183
                 +  L+ F  P  + V     +   L+         ++     + L++
Sbjct: 174 VMAVGVIMGLMSFVVPKIVKVFEQSEQALPLITQIVLSLSNIITQWWWLMLLV 226


>gi|317491688|ref|ZP_07950123.1| type II secretion system protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920122|gb|EFV41446.1| type II secretion system protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 279

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 4/157 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +   I  R    LD  P  +D+I   V+AG+ V  +V  I  +S+D  ++    ++    
Sbjct: 120 LNPAINTRIKLMLDALPYFVDLIAVCVQAGMTVESSVKFIAERSADLDKNLADLMLHLVK 179

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +     L E +  + R M + E+  F   +      G +L E L  LS+ +RD + + ++
Sbjct: 180 RAEVSGLEEGLMDLYRSMDMTEMRMFCATLQQSVHYGTSLYENLMELSKDIRDMQLLNSE 239

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            +   + AK S  +I  + F ++ L+    PG + ++
Sbjct: 240 EKIGKLSAKMSVPLILFIMFPITILIAA--PGILRIM 274


>gi|212638472|ref|YP_002314992.1| type II secretory pathway component PulF [Anoxybacillus
           flavithermus WK1]
 gi|212559952|gb|ACJ33007.1| Type II secretory pathway component PulF [Anoxybacillus
           flavithermus WK1]
          Length = 403

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 49/166 (29%), Gaps = 6/166 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
             F   L      ++AG+ + DA  ++  Q+    ++     + E    G  LS +++  
Sbjct: 63  QHFVIYLRQFATLLKAGVTIVDATRILAEQTESKALKKALVHIEEQLRSGQPLSTAMTDH 122

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P          +    +  GN+ E L  L+         + K+ +          I
Sbjct: 123 PNIFPP-----LVINMIRAGEASGNMDETLERLADHFEKVHRTRQKIVSALAYPVVVGII 177

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
              +   +   V  T          D        + A+ ++     
Sbjct: 178 AVIVVIFLLVQVVPTFVSMFADFGADLPAITKFVLRASEVMQTYWW 223


>gi|145300645|ref|YP_001143486.1| general secretion pathway protein F [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853417|gb|ABO91738.1| general secretion pathway protein F [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 388

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 48/162 (29%), Gaps = 6/162 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66
           R      +       +   V AGL + +A+  +  Q     +RS    V      G SL+
Sbjct: 42  RRGASTSELALITRQLATLVGAGLTIEEALRAVAEQCEKAHLRSLVATVRSKVVEGYSLA 101

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+                  +    +  G+L + L  L+     R++M+ K+    +  
Sbjct: 102 DSLGAFP-----HVFDQLFRSMVAAGEKSGHLEKVLNRLADYTEQRQHMRTKLLQAMIYP 156

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168
                +   +   + T V          +           + 
Sbjct: 157 IVLTLVAVGVISILLTAVVPKVVAQFEHMGQQLPATTRFLIG 198


>gi|240173378|ref|ZP_04752036.1| putative transmembrane protein [Mycobacterium kansasii ATCC 12478]
          Length = 265

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 62/172 (36%), Gaps = 1/172 (0%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                A D++V  +R G+    A      ++   V +  R V     LG  ++  +  + 
Sbjct: 90  KSLEAAFDVLVGELRVGIHPVQAFGTAADETDGAVAASMRAVAARARLGADVTGGLRAVA 149

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR-ILRDRKNMKAKVQALSMEAKASAWI 132
           R   L             +   G     L   ++  + +R+   A V +    A+A+A I
Sbjct: 150 RMSALPTHWERLAGYWQLASDHGLAIATLMRAAQSDIVERQRFSASVASGLAGARATANI 209

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +  LP     L        ++ L+N   G  LL +  A +  G++    + +
Sbjct: 210 LSGLPLLGVLLGQLIGARPVSFLLNGHAGGWLLVIGVALVCAGLLWSDRITD 261


>gi|308051179|ref|YP_003914745.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
           9799]
 gi|307633369|gb|ADN77671.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
           9799]
          Length = 405

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 57/165 (34%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            +       ++   R+G+P+  A+A +V  Q    + +  + ++E    G  LS ++++ 
Sbjct: 64  AELLMFTRQMLSLTRSGIPLLQALAGLVESQRHPLMAAALKDIVEQLTAGRPLSAALNQH 123

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R       +     +    +  G L +A   LS  L   ++ + ++Q+           
Sbjct: 124 PR-----VFNALYVAMVHVGENTGRLDQAFERLSDHLEQEQDTRRRIQSAMRYPLLVLGF 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           I      ++ LV             +      + +A +   +   
Sbjct: 179 IAIAVAVLNILVIPKFAQMFAKFGAELPLPTRILIATSDFFVTWW 223



 Score = 38.6 bits (88), Expect = 0.46,   Method: Composition-based stats.
 Identities = 10/139 (7%), Positives = 36/139 (25%), Gaps = 5/139 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                     +   +R G+PV+ +++++     +    +    +             +  
Sbjct: 266 RASLGRFARSLSMMLRGGVPVNQSLSLVADAVDNRFMHDRIIGMRRGIEAGDTISRTAVG 325

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G + E L +++       + + K     +E      +
Sbjct: 326 AELFTP-----LVLQMMAVGEETGRIDELLDDVAAFYEREVDYELKGLTAKIEPVLLVLV 380

Query: 133 IGSLPFCVSTLVYFTSPGY 151
            G +      +       +
Sbjct: 381 AGMVLVLALGVYLPMWDMF 399


>gi|285019423|ref|YP_003377134.1| general secretion pathway protein f [Xanthomonas albilineans GPE
           PC73]
 gi|283474641|emb|CBA17140.1| probable general secretion pathway protein f [Xanthomonas
           albilineans]
          Length = 404

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/171 (11%), Positives = 54/171 (31%), Gaps = 6/171 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                    +   + AG P+  A+++++     +  +     + +    G  LS ++ R 
Sbjct: 65  AALVQFTQQLATLLGAGQPLDRALSILLELPEDERSKRTIGDIRDAVRGGAPLSTALER- 123

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    S     +    + GG+L + L  L+  L   + ++ +V    +       +
Sbjct: 124 ----QHGLFSRLYINMVRAGEAGGSLHDTLQRLAEYLERSRELRGRVINALIYPAILVSV 179

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           +G     +   V          L           ++    +    ++ L++
Sbjct: 180 VGCALLFLLGYVVPQFAQMYESLDVALPWFTQAVLSVGLFVRDWWIVLLVV 230


>gi|26987369|ref|NP_742794.1| type IV pili biogenesis protein PilC [Pseudomonas putida KT2440]
 gi|24982023|gb|AAN66258.1|AE016254_5 type IV pili biogenesis protein PilC [Pseudomonas putida KT2440]
          Length = 402

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 53/171 (30%), Gaps = 11/171 (6%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSL 65
           KR  K   D       +   ++AG+P+  A  V+          +   R+ +    GL L
Sbjct: 58  KRREK--ADPAGFSRQLATLLKAGVPLLQAFEVMGRSGCDAAQAALLERLKQDVASGLGL 115

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           ++++ R                +    +  G L   L  L+ +L  R+ +  KV+   + 
Sbjct: 116 ADALQRHPA-----WFDALYCNLVRVGEQSGTLDRQLEQLAGMLEQRRVLHKKVRKAMIY 170

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
                          + L+    P + ++                 +  G+
Sbjct: 171 PLLLLLTGLG---VSAILLLEVIPKFESMFSGMGAALPAFTQWVINLSTGL 218



 Score = 38.6 bits (88), Expect = 0.47,   Method: Composition-based stats.
 Identities = 15/137 (10%), Positives = 42/137 (30%), Gaps = 7/137 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISR 71
                     +  S  AG+P+ DA+  +   +   +      R+ +    G  L+++++ 
Sbjct: 266 QAALARFARSLATSYGAGVPLLDALGTVARVTGGDLHEQAVLRLRQGMANGQGLNQAMAG 325

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              + P          ++   +  G L + L   +    ++ +         +E      
Sbjct: 326 EPLFPP------LLVQLTAIGESSGTLDQMLEKAASHYEEQVSQALDQLTSLLEPAIVLI 379

Query: 132 IIGSLPFCVSTLVYFTS 148
           +   +   V  +     
Sbjct: 380 LGLLVGGLVVAMYLPIF 396


>gi|323493929|ref|ZP_08099046.1| putative Flp pilus assembly protein TadC [Vibrio brasiliensis LMG
           20546]
 gi|323311870|gb|EGA65017.1| putative Flp pilus assembly protein TadC [Vibrio brasiliensis LMG
           20546]
          Length = 288

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 62/158 (39%), Gaps = 4/158 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIET 58
           +    K  T       P  LD++   V  G+ +  ++  +  +  + D   +   RV   
Sbjct: 133 VASRGKANTKHISSRLPFLLDLMNVCVHTGMTIESSLDYLSKELVTVDRNLAYVVRVTVD 192

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +   + L +++      +P  E   F   +    Q G ++   LA L+  +R+   M  +
Sbjct: 193 RSRLVGLEKALEEFYDLVPTSESQSFVMTMVQSLQFGSSIGPVLATLATDIRELNMMDLE 252

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
            +   M AK S  +I  +   +  L+    PG + +L+
Sbjct: 253 ERIGKMGAKMSIPLIAFIMVPIVVLIAA--PGILRMLM 288


>gi|167719676|ref|ZP_02402912.1| bacterial type II secretion system protein F domain [Burkholderia
           pseudomallei DM98]
          Length = 249

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  ++ +R        P+ALD++V    AG  ++ A+  +  +      P+  EF    +
Sbjct: 89  LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 148

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G   + +++ M   + L  +    T +    Q G  ++++L  LSR  R  + +  
Sbjct: 149 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 208

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K +  ++  +   V+ +
Sbjct: 209 EEKAAKLAPKMTLPMMLFVMPTVALI 234


>gi|163751667|ref|ZP_02158887.1| type IV pilus biogenesis protein PilC [Shewanella benthica KT99]
 gi|161328493|gb|EDP99648.1| type IV pilus biogenesis protein PilC [Shewanella benthica KT99]
          Length = 423

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/175 (9%), Positives = 51/175 (29%), Gaps = 12/175 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMV 73
           D       I   + AG+P+   + ++          E    ++     G+ LS+++    
Sbjct: 85  DIAMITRQIATMLSAGVPLVTTIEMLGRSHEKAKMRELLGTIVNDVQAGIPLSDALR--- 141

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                Q        +    +  G+L      ++      + +K+K++       A   + 
Sbjct: 142 --PHRQYFDDLYVDLVAAGEHSGSLDAVFDRVATYREKAEALKSKIKKAMFYPAAVVVVA 199

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA------AFMLIGIMVMRLM 182
             +   +   V             +        +        ++ +  +++M  +
Sbjct: 200 IGVTTLLLLFVVPQFQEIFAGFGAELPSFTQFVIGISEALQASWYIFAVIIMVSI 254


>gi|149190627|ref|ZP_01868895.1| general secretion pathway protein F [Vibrio shilonii AK1]
 gi|148835510|gb|EDL52479.1| general secretion pathway protein F [Vibrio shilonii AK1]
          Length = 409

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 54/150 (36%), Gaps = 9/150 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V++G+P+ + +  +  QS    +RS    +      G +LS+S++   
Sbjct: 70  DLALITRQLSTLVQSGMPLEECLKAVSEQSEKPRIRSMLAAIRSKVTEGYTLSDSLAEYP 129

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G+L   L  L+    +R+ +++K+Q   +       ++
Sbjct: 130 -----HIFDELFRSMVAAGEKSGHLDSILERLADYAENRQKLRSKLQQAMIYPV---VLV 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
                 V+ L+    P  +   +   +   
Sbjct: 182 VFAVAIVAFLLAAVVPKIVGQFVQMGQELP 211


>gi|319937913|ref|ZP_08012313.1| hypothetical protein HMPREF9488_03149 [Coprobacillus sp. 29_1]
 gi|319806819|gb|EFW03458.1| hypothetical protein HMPREF9488_03149 [Coprobacillus sp. 29_1]
          Length = 323

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 69/188 (36%), Gaps = 2/188 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIET 58
           + + + K      ++F   L  I   +  GL    A+      G +S  +  E   V + 
Sbjct: 133 LMNKMDKTRKALKEEFMEKLRDIGAHLSVGLNFITAINESLNSGNTSIVMARELSSVKDD 192

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            + G S SE+  +M   + + E+  F+ V  +  + GGN  + +       + ++ +  +
Sbjct: 193 IYSGKSYSETFMKMYERLQISEIKAFAQVCEIYEETGGNFLDIIYAFEDSYKMKRKVLQE 252

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            +      +     +  +P           P  +    +   G +L  +  + +  GI++
Sbjct: 253 NEVYEAAMRTEQKFVIGIPSICIVAFGVFMPEIIRGFYSSFFGQVLGIILFSIIYGGILL 312

Query: 179 MRLMINFD 186
           M   + F 
Sbjct: 313 MSRFVRFR 320


>gi|238762413|ref|ZP_04623384.1| Type II secretion system protein [Yersinia kristensenii ATCC 33638]
 gi|238699398|gb|EEP92144.1| Type II secretion system protein [Yersinia kristensenii ATCC 33638]
          Length = 272

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 61/157 (38%), Gaps = 4/157 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +K++I  R    L   P  +DI    V++G+ +  +++    +           +++   
Sbjct: 115 VKNIITSRNKSLLKSLPFFIDITAACVQSGMTIDSSLSYTAKKFELINADLSLIMLKVTR 174

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +     L  +I    +     E+  F + +      G  + E L  LS+ +R+ + +  +
Sbjct: 175 RAEINGLESAIKEFHQSSTELEIRMFCSALQYSISFGATVYEQLIKLSQDMREMQLLVTE 234

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            +   + AK +  +   +      LV   SP  + +L
Sbjct: 235 EKISKLTAKLTIPLFLFILIPFIILV--ISPSVLELL 269


>gi|20089131|ref|NP_615206.1| integral membrane protein [Methanosarcina acetivorans C2A]
 gi|19913998|gb|AAM03686.1| integral membrane protein [Methanosarcina acetivorans C2A]
          Length = 662

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 54/148 (36%), Gaps = 1/148 (0%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  K  +  P+ L  +     +G+ +S+++ ++       +  E +++ E    G S S 
Sbjct: 444 RMRKIDERMPDLLRNLSSMNDSGILLSNSLKIMAESKMGILSKELKKLKEDLSWGNSTSR 503

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS-MEA 126
           ++ ++   +     S     +   ++   ++   L+  +  ++  + +K +  +   +  
Sbjct: 504 ALMKLENNIRTATSSRVLHTLIKANESTSDIKNVLSITAEQVKSEERLKEERSSEMVVYV 563

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154
                      F V  L  +  P   + 
Sbjct: 564 VTIYVAFFVFLFIVYILAVYFFPESASF 591


>gi|167032060|ref|YP_001667291.1| general secretion pathway protein F [Pseudomonas putida GB-1]
 gi|166858548|gb|ABY96955.1| general secretion pathway protein F [Pseudomonas putida GB-1]
          Length = 400

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 56/191 (29%), Gaps = 20/191 (10%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R              +   + AG+P+ DA+A +  Q   P       V     L   L 
Sbjct: 53  RRQRLSRAQLCELTRQLATLIGAGIPLVDALATLERQLRQPALH-SVLVALRGSLAEGLG 111

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            + S   +  P          +    +  G L++ L  L+  L   +  + K +   +  
Sbjct: 112 LARSLARQGAPFTG---LYCALVEAGERSGRLAQVLTRLADHLEQVQRQQHKARTALIYP 168

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR----------------GHMLLGVAAA 170
                +  ++   + T V                                G  ++G+A  
Sbjct: 169 TVLMGVSLAVVIGLMTFVVPKLTEQFAHAGQSLPLITSLLIGLSQGLVLAGPWMVGLALM 228

Query: 171 FMLIGIMVMRL 181
             ++G  ++R 
Sbjct: 229 LAVLGGWLLRK 239



 Score = 36.3 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/128 (10%), Positives = 37/128 (28%), Gaps = 7/128 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +     +G+ + +A+ V      +        +V +    G SL  ++         Q
Sbjct: 270 RSLAILSGSGVALLEALHVATDTIGNRRIRLAMEQVRQQVQGGTSLHRALDA------CQ 323

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
           +       +    +  G L++ L  ++         +        E      +   + F 
Sbjct: 324 QFPPLLVNMVGSGEASGTLADMLERVADDQERGFARQVDTAMALFEPLMILVMGAVVLFI 383

Query: 140 VSTLVYFT 147
           V  ++   
Sbjct: 384 VLAVLLPI 391


>gi|323494569|ref|ZP_08099673.1| general secretion pathway protein F [Vibrio brasiliensis LMG 20546]
 gi|323311172|gb|EGA64332.1| general secretion pathway protein F [Vibrio brasiliensis LMG 20546]
          Length = 408

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 46/149 (30%), Gaps = 7/149 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           D       +   V++G+P+ + +  +  QS  P        + ++               
Sbjct: 69  DLALITRQLATLVQSGMPLEECLKAVSEQSEKPRIRTMLLAVRSKVT----EGYTLADSL 124

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                        +    +  G+L   L  L+    +R+ M++K+Q   +       ++ 
Sbjct: 125 ADYPHVFDDLFRSMVSAGEKSGHLDSVLERLADYAENRQKMRSKLQQALIYPV---VLVV 181

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
                V+ L+    P  +   +   +   
Sbjct: 182 FAVGIVAFLLAAVVPKIVGQFVQMGQELP 210


>gi|322370282|ref|ZP_08044841.1| type IV pilus biogenesis complex membrane subunit [Haladaptatus
           paucihalophilus DX253]
 gi|320549990|gb|EFW91645.1| type IV pilus biogenesis complex membrane subunit [Haladaptatus
           paucihalophilus DX253]
          Length = 680

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/155 (11%), Positives = 53/155 (34%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +   K +    + L  +  +   GL + ++V  +   SS  +  EF R+      G+ + 
Sbjct: 453 RSRHKVIRKLSDDLRKLSSANDTGLTLLESVKNVAETSSGKLADEFDRIHAKVEYGMGMK 512

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++        +  ++    +IS   +    ++  L   ++   ++ ++  + ++ +   
Sbjct: 513 AALIEFNNRYHIPRLARTVKLISKAQEASSQITAVLTTAAQTSENQDDIARERRSRARMQ 572

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
                +       V  ++       M  L     G
Sbjct: 573 VVIIIMTYLTLLAVMAILKTQFLDVMANLSASAGG 607



 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 57/178 (32%), Gaps = 7/178 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQHL 61
               R  +     P+A+  +      GL   + +  +     +   V  EF+ V++    
Sbjct: 140 RAGARKREINMLLPDAISFMYALSIGGLNQLEILEAMAKADDTYGEVSREFQSVVQETEY 199

Query: 62  G-LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
             +    +I +     P  E+S F T +      GGN++  L +           + ++ 
Sbjct: 200 FDIDYRNAIRKRALETPSDELSQFFTDMLSIINSGGNMTRFLDDKKDKHMRTAKQEQELT 259

Query: 121 ALSMEAKASAWII----GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
             ++E     ++       L   +  ++         +L       + L      +L+
Sbjct: 260 LETLELFGEMYMTLSLFPLLLIIILVIMSMLGKAQEMLLYGTVYALIPLTGVGFLVLV 317


>gi|332304531|ref|YP_004432382.1| general secretion pathway protein F [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332171860|gb|AEE21114.1| general secretion pathway protein F [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 406

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 60/176 (34%), Gaps = 8/176 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V + LP+ +A+  +  QS     ++    V      G +L+++++   
Sbjct: 67  DLALLTRQLATLVESSLPIEEALMAVAQQSEKPRQKNMMMAVRSKVVEGYNLADAMAEFP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G+L   L  L+     R+  ++++    +      +  
Sbjct: 127 -----HVFDELFRAMVAAGEKSGHLDTVLNRLADYTEKRQQTRSQITQAMVYPTLMMFFA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA--FMLIGIMVMRLMINFDV 187
             +   + T+V     G  + +  D      + ++ +      G+ ++ L+    V
Sbjct: 182 MGIVILLLTVVVPKIVGQFDHMGQDLPTITKVLISVSEWMQNYGLALIALLAVVAV 237


>gi|209694069|ref|YP_002261997.1| type IV pilus, mannose-sensitive hemagglutinin protein [Aliivibrio
           salmonicida LFI1238]
 gi|208008020|emb|CAQ78158.1| type IV pilus, mannose-sensitive hemagglutinin protein [Aliivibrio
           salmonicida LFI1238]
          Length = 408

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 49/163 (30%), Gaps = 6/163 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVR 74
                  +    +AG+P+  A+  +   SS+  ++     V      G SLS S+ +   
Sbjct: 69  LVIFCRQMYSLTKAGVPLLRAMNGLSQNSSNKILKKALDEVTSDLTNGRSLSVSMQQHP- 127

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                  S     +    +  G L +AL  L+         + ++++           I 
Sbjct: 128 ----HVFSSLFVSMIHVGENTGRLDQALMQLASYYEQEMETRKRIKSAMRYPIFVLSFIL 183

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
              F ++  V             +      + +A +   +   
Sbjct: 184 LAMFVLNVKVIPQFTSMFARFGVELPLPTRILMATSSFFVNYW 226



 Score = 38.2 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 9/135 (6%), Positives = 33/135 (24%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         +++G+P++ ++A+      +              +   +    S  
Sbjct: 269 RAQMSRFSRTFALMLKSGVPLNQSLALSAEALGNKYLE-----NRLLEMKNGIESGTSMS 323

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    +     +    +  G + + L  +S       +   +     +E      +
Sbjct: 324 ATAAQSGIFTPLVQQMIAVGEETGQIDDLLLEVSDFYDREVDYDLRTLTARIEPLLLVVV 383

Query: 133 IGSLPFCVSTLVYFT 147
            G +      +    
Sbjct: 384 AGMVLILALGIFLPM 398


>gi|311694494|gb|ADP97367.1| general secretion pathway protein F [marine bacterium HP15]
          Length = 403

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 58/161 (36%), Gaps = 9/161 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +++G+P+  A++    QS    +RS    +      G +L++S+   
Sbjct: 64  ADLALVTRQLATLIQSGIPIEQALSAAAQQSPKPRIRSMLIAIRAKVMEGYTLADSLGEF 123

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R  P               +  G+L   L  L+    +R+  + K+Q  ++       +
Sbjct: 124 PRAFP-----RLYRSTVAAGEHAGHLDLVLNRLADYTENRQEARQKIQLAAIYPI---IL 175

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
                  V  L+ +  P  ++V +   +    L +A   + 
Sbjct: 176 SIVAIAIVVFLLTYVVPDIIDVFLKQGQELPTLTMAMLAVS 216



 Score = 37.4 bits (85), Expect = 0.86,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 41/126 (32%), Gaps = 7/126 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +     +G+P+ +A+ +     S+  +R E R        G SL  S+ +   + P+   
Sbjct: 276 LSILTTSGVPLVEAMRIAGEVLSNDFLRQELRDAARKVSEGGSLHRSLDQTGYFPPM--- 332

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L   L   +R+  +    K        E      +   +   V 
Sbjct: 333 ---MLHMIASGEASGELDSMLERTARMQENTLQSKIAAIVGLFEPMMLLVMGVVVLIIVL 389

Query: 142 TLVYFT 147
            ++   
Sbjct: 390 AIMLPI 395


>gi|167821658|ref|ZP_02453338.1| bacterial type II secretion system protein F domain [Burkholderia
           pseudomallei 91]
          Length = 266

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  ++ +R        P+ALD++V    AG  ++ A+  +  +      P+  EF    +
Sbjct: 106 LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 165

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G   + +++ M   + L  +    T +    Q G  ++++L  LSR  R  + +  
Sbjct: 166 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 225

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K +  ++  +   V+ +
Sbjct: 226 EEKAAKLAPKMTLPMMLFVMPTVALI 251


>gi|13475422|ref|NP_106986.1| hypothetical protein mlr6486 [Mesorhizobium loti MAFF303099]
 gi|14026174|dbj|BAB52772.1| mlr6486 [Mesorhizobium loti MAFF303099]
          Length = 305

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 58/140 (41%), Gaps = 3/140 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF---RRVIE 57
           +     ++   +   FP+ +D+++    AG+ +  AV  +  + +   +        V  
Sbjct: 146 LDRFESRQKQVYRRGFPDFMDMMITCADAGMSLEAAVERVGAELAGTHKWLGIQLSIVTL 205

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G  L E++  +   + L E    + +     +LG +L++AL   S  +R ++ M A
Sbjct: 206 QLRAGKPLREALRELADRIGLDEARALAVLFRQSEELGTSLTDALRIYSDEMRTQRIMNA 265

Query: 118 KVQALSMEAKASAWIIGSLP 137
           + +A ++  K    +   + 
Sbjct: 266 EERANALPVKMMIPLGLCIF 285


>gi|167738668|ref|ZP_02411442.1| bacterial type II secretion system protein F domain [Burkholderia
           pseudomallei 14]
          Length = 253

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  ++ +R        P+ALD++V    AG  ++ A+  +  +      P+  EF    +
Sbjct: 93  LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 152

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G   + +++ M   + L  +    T +    Q G  ++++L  LSR  R  + +  
Sbjct: 153 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 212

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K +  ++  +   V+ +
Sbjct: 213 EEKAAKLAPKMTLPMMLFVMPTVALI 238


>gi|27364323|ref|NP_759851.1| general secretion pathway protein F [Vibrio vulnificus CMCP6]
 gi|37678400|ref|NP_933009.1| type II secretory pathway, component EpsF [Vibrio vulnificus YJ016]
 gi|320157715|ref|YP_004190094.1| general secretion pathway protein E [Vibrio vulnificus MO6-24/O]
 gi|27360441|gb|AAO09378.1| general secretion pathway protein F [Vibrio vulnificus CMCP6]
 gi|37197139|dbj|BAC92980.1| type II secretory pathway, component EpsF [Vibrio vulnificus YJ016]
 gi|319933027|gb|ADV87891.1| general secretion pathway protein E [Vibrio vulnificus MO6-24/O]
          Length = 405

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 59/172 (34%), Gaps = 8/172 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           +       I   V++G+P+ + +  +  Q+    +R     V      G +L++S+S   
Sbjct: 66  ELSLITRQISTLVQSGMPLEECLKAVSDQAEKPRIRGMLAAVRAKVTEGYTLADSLSDYP 125

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G+L   L  L+    +R+ M++K+    +         
Sbjct: 126 -----HIFDELYRSMVAAGEKSGHLDAVLERLADYCENRQKMRSKLLQAMIYPVVLVVFA 180

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMI 183
            ++   +   V       +  +  +       LL  +      G++++  ++
Sbjct: 181 VTIVAFLLATVVPKIVEPIIQMGQELPQSTQFLLAASEFVQEWGLLLLGSIV 232


>gi|86146570|ref|ZP_01064892.1| Type II secretory pathway, component EpsF [Vibrio sp. MED222]
 gi|218708201|ref|YP_002415822.1| type II secretory pathway subunit EpsF [Vibrio splendidus LGP32]
 gi|85835627|gb|EAQ53763.1| Type II secretory pathway, component EpsF [Vibrio sp. MED222]
 gi|218321220|emb|CAV17170.1| Type II secretory pathway, component EpsF [Vibrio splendidus LGP32]
          Length = 406

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 53/175 (30%), Gaps = 6/175 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           D       I   V++G+P+ + +  +  QS  P        + ++               
Sbjct: 67  DLALITRQISTLVQSGMPLEECLKAVAEQSEKPRIRTMLLAVRSKVT----EGYSLADSL 122

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                        +    +  G+L   L  L+    +R+ M++K+    +          
Sbjct: 123 SDYPHIFDELFRAMVAAGEKSGHLDAVLERLADYAENRQKMRSKLLQAMIYPVVLVVFAV 182

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMINFDV 187
           ++   +   V       +  +  +       LL  +      GI ++ L+I   V
Sbjct: 183 TIVSFLLATVVPKIVEPIIQMGQELPQSTQFLLASSEFIQNWGIQLLLLIIGVIV 237


>gi|251795274|ref|YP_003010005.1| type II secretion system protein [Paenibacillus sp. JDR-2]
 gi|247542900|gb|ACS99918.1| type II secretion system protein [Paenibacillus sp. JDR-2]
          Length = 282

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 68/157 (43%), Gaps = 8/157 (5%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQ 59
            L+++R    + + P AL  ++  V AG PV  A +  +        P+  E+ RV+   
Sbjct: 129 RLVERRKQAIVSELPEALSKLMLLVGAGEPVLQAFSRCLEGKDPAVQPLYKEWDRVVIAL 188

Query: 60  HLGLSLSESISRMVRYMPLQEVS-FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             G S S ++ R  R   +QEVS F + ++    + G     AL  +S  L +++   A+
Sbjct: 189 RNGESFSTALERFNRSCAVQEVSIFTTVILLNYRRGGDQFVLALREISYSLWEKRKAVAR 248

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            +         + ++  L   +  L+ F +   M ++
Sbjct: 249 SRGEEAS----SKLVFPLVGILLVLMVFVAAPAMLLM 281


>gi|148241117|ref|YP_001226274.1| Type II secretory pathway, component PulF [Synechococcus sp.
           RCC307]
 gi|147849427|emb|CAK26921.1| Type II secretory pathway, component PulF [Synechococcus sp.
           RCC307]
          Length = 410

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 58/156 (37%), Gaps = 6/156 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   V AG+P+  ++ ++  Q      +   +R+    + G SL  ++ R  +   
Sbjct: 75  FASQMAALVSAGVPIVRSLEILAEQQKLPMFKRALQRLSLDVNQGSSLGSALRRWPQ--- 131

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  S  +    + GG L E L  L+++L D   ++ +++           I  ++ 
Sbjct: 132 --VFDALSVAMVEAGEAGGVLEEVLKRLAKLLEDNAKLQNQIRGALGYPVTVLVIAIAVF 189

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             ++  +  T  G    L  +      L V  + +L
Sbjct: 190 LGMTIFLIPTFAGIFEDLGAELPAFTQLMVNLSALL 225



 Score = 39.7 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/136 (12%), Positives = 44/136 (32%), Gaps = 7/136 (5%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRY 75
                      RAG+P+  A+ ++     + V +E     +     G +LS +++R    
Sbjct: 277 AQFCRTFSSLTRAGVPILMALDIVRDTVGNRVLAEAIESAKVEVQEGGTLSLALAR---- 332

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
              +     +  + +  +  G +   L+ ++    D      K     +E      + G 
Sbjct: 333 --RKVFPSMAMSMLLIGEESGEVDAMLSKVADFYEDEIAATVKAMTAMLEPAMIVVVGGI 390

Query: 136 LPFCVSTLVYFTSPGY 151
           +   +  +       +
Sbjct: 391 VGSILLAMYLPMFSVF 406


>gi|323705271|ref|ZP_08116846.1| Type II secretion system F domain [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535173|gb|EGB24949.1| Type II secretion system F domain [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 404

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 56/170 (32%), Gaps = 6/170 (3%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSE 67
               + D           + AG+P+  ++A +  Q  +  ++     V E    G +LSE
Sbjct: 59  RKVKVKDIAVFCRQFSVLINAGIPIVASLATLSEQVENKRLKKALTDVYEDVQKGKTLSE 118

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           S+ +     P+         +    ++ G L + L  ++       N+  K+++      
Sbjct: 119 SMRKHPDVFPM-----LLFNMIEAGEVSGTLDKVLNEMAEHFEKENNLNQKIKSALAYPA 173

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
             + +   +   + T V  T  G             L+ +  +  +    
Sbjct: 174 IVSIVAVLVVVFLVTNVLPTFVGMFKNAGAQLPTPTLILLGLSDSIAHYW 223



 Score = 35.5 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/133 (8%), Positives = 37/133 (27%), Gaps = 5/133 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+P+ ++++ +V +               + +      ++        +
Sbjct: 272 FTRTLSTLIGSGIPLMESLS-VVEKVVGNTVVANGLKKAEEEIKRGNGLALP----LKKI 326

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G+L   L   +       +         +E      +   + F
Sbjct: 327 DIFPPMVIQMIKVGEDSGSLDSILKKTADFYDSEVDTAVSQMTTLIEPLIIVLLASIVGF 386

Query: 139 CVSTLVYFTSPGY 151
            V ++V      Y
Sbjct: 387 IVVSIVMPMFQMY 399


>gi|167845808|ref|ZP_02471316.1| bacterial type II secretion system protein F domain [Burkholderia
           pseudomallei B7210]
 gi|167894380|ref|ZP_02481782.1| bacterial type II secretion system protein F domain [Burkholderia
           pseudomallei 7894]
          Length = 237

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  ++ +R        P+ALD++V    AG  ++ A+  +  +      P+  EF    +
Sbjct: 77  LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 136

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G   + +++ M   + L  +    T +    Q G  ++++L  LSR  R  + +  
Sbjct: 137 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 196

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K +  ++  +   V+ +
Sbjct: 197 EEKAAKLAPKMTLPMMLFVMPTVALI 222


>gi|294787152|ref|ZP_06752405.1| conserved hypothetical protein [Parascardovia denticolens F0305]
 gi|294484508|gb|EFG32143.1| conserved hypothetical protein [Parascardovia denticolens F0305]
          Length = 269

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 60/181 (33%), Gaps = 6/181 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             + R  K      + +  ++  +  G  + DA      +    V +      +     L
Sbjct: 35  RARLRVKKTDAG--DFIAELISLLHNGSGMVDA----CQEMGGMVFAIPELTDDRMKAVL 88

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           +      R  R    +          + + LG + S+ L  +    +    +  K ++  
Sbjct: 89  ARRCGHGRSDRAYLTRLARQLVASCKLSATLGCSASQCLEAVGVEHKRYLAVADKKRSAL 148

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
              + +  ++  LP  V      TS     VL   P G + L +AA    +G+  ++ ++
Sbjct: 149 SIPRLTVKVLLILPLLVLGGSQLTSARTFQVLFMRPVGWLCLSLAAILYGLGLRWVKRLL 208

Query: 184 N 184
            
Sbjct: 209 R 209


>gi|262360786|gb|ACY57507.1| hypothetical protein YPD4_0598 [Yersinia pestis D106004]
          Length = 193

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 4/157 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +K+ + KRT   L   P  +DI    V++G+ + +++     +           + +   
Sbjct: 33  IKNALTKRTNNLLKSLPFFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTK 92

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +     L  +I  +  Y P  E+  F + +      G  + E L +LS+ +R+ + +  +
Sbjct: 93  RAEINGLENAIKELQYYSPAIEMKMFCSTLQYSISFGSTVYEQLTHLSQDMREMQLLMTE 152

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                +  K +  +   +      LV   SP  + +L
Sbjct: 153 ESISKLSTKLTLPLFLFILIPFVLLV--ISPSILELL 187


>gi|259506084|ref|ZP_05748986.1| membrane protein [Corynebacterium efficiens YS-314]
 gi|259166372|gb|EEW50926.1| membrane protein [Corynebacterium efficiens YS-314]
          Length = 224

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 64/187 (34%), Gaps = 6/187 (3%)

Query: 3   HLIKKRTAKFLDD----FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
            L + RT++            L + + ++RAG P++DA+   +  ++    S     +  
Sbjct: 32  RLKRGRTSRVTRAQTTVLAGFLGLCIGNLRAGAPMADAMDHALAHTTGSTGSAGPTTVAL 91

Query: 59  QHLGLSLSESISRMVRYM--PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
                 +    S     +  P  ++    T+  V  + G  L   L  L   L  ++  +
Sbjct: 92  TAAARRVRSGGSGAAVLIDAPTMDLQRLGTIWEVSERHGIPLVRLLDQLKHRLEAQERHR 151

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
               A     +A+A I+  LP     +        +  L     G +LL         G 
Sbjct: 152 QASAAQLQGPQATAVILALLPLAGVLMGTAMGADPIGFLTGGGVGGILLITGVLLSAAGF 211

Query: 177 MVMRLMI 183
           ++   ++
Sbjct: 212 ILTEKIL 218


>gi|148642656|ref|YP_001273169.1| type II secretion system protein, GspF [Methanobrevibacter smithii
           ATCC 35061]
 gi|148551673|gb|ABQ86801.1| type II secretion system protein, GspF [Methanobrevibacter smithii
           ATCC 35061]
          Length = 305

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 69/170 (40%), Gaps = 2/170 (1%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           + P AL  +   ++AG  + D +  +   +   +  EF+RV++    G S  +++  M  
Sbjct: 132 ELPYALRHMATELKAGKGLHDTLLTVSIANYGSLSGEFKRVLKEIKYGKSSEDALMEMSL 191

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK--ASAWI 132
            +  + +S     I    ++GGNL+ +L  ++  +     +K K  +  +        +I
Sbjct: 192 RVSSEGLSRAVHQIVGTLRVGGNLANSLNVIAEDISFDMQIKLKEYSQKLNGFILIYTFI 251

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
               P  +  ++   S    +++  +    M +      ++   + ++ M
Sbjct: 252 AILAPVIILIMLMAASTVVGDIVSEEMVFIMYMFFFPLIVVFMALFIKRM 301


>gi|71734185|ref|YP_274397.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554738|gb|AAZ33949.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 403

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/181 (11%), Positives = 55/181 (30%), Gaps = 15/181 (8%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             D  +    +   + AGLP+ +A+   V Q+                +   +  + +  
Sbjct: 63  DADLASVTRQLASLLSAGLPLDEALGATVEQAE-RQHIIQTLGAIRTDVRSGMRLAEALA 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R     +       +    +  G L+  +  L+  + +R  ++ K+    +       +
Sbjct: 122 ARPRDFPD---IYRALIGAGEESGGLARVMERLADYIEERNGLRGKILTAFIYPGVVGLV 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-----------IGIMVMRL 181
             ++   + + V        +    D  G  L  +AA+  +           +  +    
Sbjct: 179 SIAIVIFLLSYVVPQIVSAFSQARQDLPGLTLAMLAASDFIRAWGLVCLGVLLAALWGWR 238

Query: 182 M 182
           +
Sbjct: 239 I 239


>gi|330989444|gb|EGH87547.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 403

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/181 (10%), Positives = 55/181 (30%), Gaps = 15/181 (8%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             D  +    +   + AGL + +A+   V Q+                +   +  + +  
Sbjct: 63  DADLASVTRQLASLLSAGLSLDEALGATVEQAE-RQHIIQTLSAIRTDVRSGMRLAEALA 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R     +       +    +  G+L+  +  L+  + +R  ++ K+    +       +
Sbjct: 122 ARPRDFPD---IYRALIGAGEESGDLARVMERLADYIEERNGLRGKILTAFIYPGVVGLV 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-----------IGIMVMRL 181
             ++   + + V        +    D  G  L  +AA+  +           +  +    
Sbjct: 179 SIAIVIFLLSYVVPQIVSAFSQARQDLPGLTLAMLAASDFIRAWGLVCLGVLLAALWGWR 238

Query: 182 M 182
           +
Sbjct: 239 I 239



 Score = 34.3 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 37/129 (28%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+  A+       S+      R  +        + E ++  V     
Sbjct: 272 FASTLAILGAAGVPLLRALDAARQTLSND-----RLSLAVSEATSRVREGVNLAVALRME 326

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +        +    +  G+L   L   ++ L      +A      +E      + G +  
Sbjct: 327 KVFPPLLIHLIASGEKTGSLPPMLDRAAQTLSRDIERRALGMTALLEPLMIVIMGGVVLV 386

Query: 139 CVSTLVYFT 147
            V  ++   
Sbjct: 387 IVMAVMLPI 395


>gi|167622409|ref|YP_001672703.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
 gi|167352431|gb|ABZ75044.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
          Length = 420

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/175 (11%), Positives = 53/175 (30%), Gaps = 9/175 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMV 73
           D       I   + AG+P+   + ++          E    ++     G+ LS+S+    
Sbjct: 81  DIAMMTRQIATMLAAGVPIVTTLELLGKGHEKAKMRELLATIVNDVQSGIPLSDSLR--- 137

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +        +    +  G+L      ++      + +K+K++       A   + 
Sbjct: 138 --PHRKYFDDLYVDLVAAGEHSGSLDAVFDRIATYREKSEALKSKIKKAMFYPAAVVIVA 195

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG---IMVMRLMINF 185
             +   +   V        N    +        ++ +  L     I V+ +++  
Sbjct: 196 IMVTALLLLFVVPQFEDIFNGFGAELPAFTQFIISISRWLQASWYIFVIAIIVGI 250


>gi|293400854|ref|ZP_06644999.1| putative type II secretion pathway protein XcpS
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305880|gb|EFE47124.1| putative type II secretion pathway protein XcpS
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 397

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/167 (9%), Positives = 58/167 (34%), Gaps = 6/167 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            +  +    +   + +G+ +  A++++V  Q +  +++ +  +      G++LS ++   
Sbjct: 58  KELSDFSRQLGTMIGSGVSLIRAISILVQRQKNPKIKAIYTDIYRKLQQGMTLSYAMEEQ 117

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +  P          +    +  G +      ++        +K KV+   +       +
Sbjct: 118 GKAFP-----ELMINMYRTGETSGQMERVAMTMALQYEKDNRIKGKVRNAMIYPIILICV 172

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
              +   V T +  +     N +       ++  ++ A +     ++
Sbjct: 173 TIFVVIGVFTFIIPSFSKVFNGMELPMITKIVNAISEAMLAYWYWML 219


>gi|291279633|ref|YP_003496468.1| general secretion pathway protein F [Deferribacter desulfuricans
           SSM1]
 gi|290754335|dbj|BAI80712.1| general secretion pathway protein F [Deferribacter desulfuricans
           SSM1]
          Length = 405

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 63/173 (36%), Gaps = 9/173 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQ 59
           +K+L  + +   L++             AG+PV   +  +  QS ++ +     ++    
Sbjct: 53  LKNLKSRFSKVKLEELIVFTRQFATLFEAGIPVIKILERLSTQSFTEKLTQSIHQIKNDV 112

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             GL LS + +R          S     +    + GG L   L  L+ IL      K ++
Sbjct: 113 DAGLPLSNAFNR-----QKHIFSPLYVNMIKVGEEGGVLDITLQRLAAILESELETKNRI 167

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
           +  +   K    +IG++    S LV F  P + ++         L      ++
Sbjct: 168 KTATRYPK---IVIGAIIIAFSILVTFVIPKFASMFAKFNTELPLPTKILIWI 217



 Score = 42.8 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 46/133 (34%), Gaps = 7/133 (5%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                 ++    R+G+ ++ +  ++     ++ ++ E   + E    G +++ +  R   
Sbjct: 271 LSRISRVLALLYRSGINITASFDIVSEITGNNILKRELLYIKEQISRGSNIASAFRR--- 327

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
               +      + +    +  G L E L  LS    +  +   K  + ++E     +I G
Sbjct: 328 ---SKYFPPVVSDMVESGEETGRLDEMLIKLSDYYDEEVDYSIKTLSQALEPILLVFIAG 384

Query: 135 SLPFCVSTLVYFT 147
            +      +    
Sbjct: 385 MVLLLALGVFLPM 397


>gi|320324666|gb|EFW80740.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 403

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/181 (11%), Positives = 56/181 (30%), Gaps = 15/181 (8%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             D  +    +   + AGLP+ +A+   V Q+                +   +  + +  
Sbjct: 63  DADLASVTRQLASLLSAGLPLDEALGATVEQAE-RQHIIQTLGAIRTDVRSGMRLAEALA 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R     +       +    +  G+L+  +  L+  + +R  ++ K+    +       +
Sbjct: 122 ARSRDFPD---IYRALIGAGEESGDLARVMERLADYIEERNGLRGKILTAFIYPGVVGLV 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-----------IGIMVMRL 181
             ++   + + V        +    D  G  L  +AA+  +           +  +    
Sbjct: 179 SIAIVIFLLSYVVPQIVSAFSQARQDLPGLTLAMLAASDFIRAWGLVCLGVLLAALWGWR 238

Query: 182 M 182
           +
Sbjct: 239 I 239



 Score = 34.3 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 37/129 (28%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+  A+       S+      R  +        + E ++  V     
Sbjct: 272 FASTLAILGAAGVPLLRALDAARQTLSND-----RLSLAVSEATSKVREGVNLAVALRME 326

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +        +    +  G+L   L   ++ L      +A      +E      + G +  
Sbjct: 327 KVFPPLLIHLIASGEKTGSLPPMLDRAAQTLSRDIERRALGMTALLEPLMIVIMGGVVLV 386

Query: 139 CVSTLVYFT 147
            V  ++   
Sbjct: 387 IVMAVMLPI 395


>gi|282863648|ref|ZP_06272706.1| type II secretion system protein [Streptomyces sp. ACTE]
 gi|282561349|gb|EFB66893.1| type II secretion system protein [Streptomyces sp. ACTE]
          Length = 294

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 62/176 (35%), Gaps = 2/176 (1%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
             +  +        +V  +RAG     A+    G+    + S    V+     G  + E+
Sbjct: 116 RERAAEAVTMLCGAVVGELRAGREPGRALLTAGGE--GALGSAEAAVLAAARFGGDVPEA 173

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           + R       + ++  +    V    G  L+  LA +   LR  +  + +++A    A +
Sbjct: 174 LRRASLVPGFEGLAGMAACWRVAVDGGAGLATGLARIEHALRAERRGREELRAQLAGAWS 233

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +  ++  LP     L        + VL++ P G   L   +     G+     ++ 
Sbjct: 234 TVVVLALLPVVGLGLGAALGADPLRVLLHSPGGLACLVAGSLLEAAGLFWATRIVR 289


>gi|262402016|ref|ZP_06078581.1| general secretion pathway protein F [Vibrio sp. RC586]
 gi|262351988|gb|EEZ01119.1| general secretion pathway protein F [Vibrio sp. RC586]
          Length = 406

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 57/172 (33%), Gaps = 8/172 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V++G+P+ + +  +  QS    +R+    V      G +LS+S+    
Sbjct: 67  DLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G+L   L  L+    +R+ M++K+Q   +         
Sbjct: 127 -----HVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFA 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183
             +   +   V     G    +          LL  +      GI ++  ++
Sbjct: 182 VGIVAFLLAAVVPKIVGQFVQIGQALPASTQFLLDASDFLQHWGIWLLISLM 233


>gi|227113971|ref|ZP_03827627.1| type IV pilin biogenesis protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 401

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 59/171 (34%), Gaps = 14/171 (8%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
            +    ++  +   ++AGLP+ +A+ ++  Q      R   R V      G SLSE++  
Sbjct: 58  REQLGESIKQLAALLQAGLPLLEALKLVSEQHDRPGWRCVLRDVRTHVAQGSSLSEALQE 117

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P+         +    +L G L      L++    +  ++ KV           +
Sbjct: 118 YPHIFPV-----LYRSLIAVGELTGKLDACCLQLAQQQEKQSRLQQKVIKALRYP---CF 169

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHM---LLGVAAAFMLIGIM 177
           ++         ++    P +  +    + P       LL +A      G++
Sbjct: 170 VLAIAMLVSMMMLTLVLPEFATLYSSFDTPLPWFTRQLLYLAEIISDYGLI 220


>gi|52550504|gb|AAU84353.1| conserved hypothetical protein [uncultured archaeon GZfos9D8]
          Length = 322

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 65/151 (43%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +K +  K    FP+ L  +    R+G+P+  A+ ++       +    + +      G++
Sbjct: 98  VKTKIRKIDAHFPSLLGDLAHLRRSGMPLGAAMGLVAQGQYGVLTKPIKWIDSQMTWGVT 157

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++++R  +  P   +    ++I   S+ GG + E L  ++    + K ++ K ++ + 
Sbjct: 158 FEDALARFAKRYPTPLIRRSISIIIEASRAGGEIGEILEAVAEDAHELKILEVKRKSETT 217

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
              A +++   +   V  ++  +    M V+
Sbjct: 218 PYLAVSYLSYFVFVAVIMILCTSFLPMMEVM 248


>gi|330810078|ref|YP_004354540.1| type II secretion system protein F [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378186|gb|AEA69536.1| putative type II secretion system protein F [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 403

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 60/168 (35%), Gaps = 6/168 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
            +D   A   +   + A LP+  A++  V Q+    +      V      G+ L+E+++ 
Sbjct: 63  DNDLAWATRQLASLLGASLPLEAALSATVEQAERKHIAQTLSAVRADVRSGMRLAEALAA 122

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             R     +       +    +  G+L++ +  L+  + +R N++ K+    +       
Sbjct: 123 RPR-----DFPEIYRALIAAGEESGDLAQVMERLADYIEERNNLRGKILTAFIYPGVVGL 177

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +  ++   + + V        +    D     +  + A+  +     +
Sbjct: 178 VSVAIVIFLLSYVVPQVVSAFSQARQDLPALTVAMLTASDFIRAWGWL 225



 Score = 34.3 bits (77), Expect = 7.1,   Method: Composition-based stats.
 Identities = 15/129 (11%), Positives = 35/129 (27%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+  A+       S+   S+             + E ++        
Sbjct: 272 FASTLAILGGAGVPLLRALEAARQTLSNDRLSQSV-----SEATAKVREGVNLAAALRVE 326

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +        +    +  G L   L   ++ L      +A      +E      + G +  
Sbjct: 327 KVFPPVLIHLIASGEKTGCLPPMLERAAQTLSRDIERRAMGMTALLEPLMIVVMGGVVLV 386

Query: 139 CVSTLVYFT 147
            V  ++   
Sbjct: 387 IVMAVLLPI 395


>gi|261251276|ref|ZP_05943850.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio orientalis CIP 102891]
 gi|260938149|gb|EEX94137.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio orientalis CIP 102891]
          Length = 288

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 59/149 (39%), Gaps = 4/149 (2%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQHLGLSLSE 67
                  P  LD++   V  G+ +  ++  +  +  + D   +   RV   +   + L +
Sbjct: 142 KHISSRLPFLLDLMNVCVHTGMTIESSLDYLSKELVTVDRNLAYVVRVTVDRSRLVGLEK 201

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++      +P  E   F   +    Q G ++   LA L+  +R+   M  + +   M AK
Sbjct: 202 ALEEFYDLVPTSESQSFVMTMVQSLQFGSSIGPVLATLATDIRELNMMDLEERIGKMGAK 261

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
            S  +I  +   +  L+    PG + +L+
Sbjct: 262 MSIPLIAFIMVPIVVLIAA--PGILRMLM 288


>gi|188586711|ref|YP_001918256.1| type II secretion system protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351398|gb|ACB85668.1| type II secretion system protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 404

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 47/155 (30%), Gaps = 9/155 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
             D           ++AG+ V D++  +  Q     +      V E+   G SL+ES   
Sbjct: 65  SRDLMIFSRQFATMIKAGVTVLDSLESLSEQMDSKKLSRGLVNVTESLRGGNSLAESFHE 124

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    +  G L + L  ++        +  K+++          
Sbjct: 125 -----QKDVFPELFVNMISAGEEAGALEDVLERMAVHYEKEHQLLEKIKSAMTYPV---I 176

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
           ++G     V  LV +  P +  +         LL 
Sbjct: 177 LLGVAFLVVYFLVTYVLPEFAGIFAGMDVELPLLT 211


>gi|154250530|ref|YP_001411354.1| type II secretion system protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154154480|gb|ABS61697.1| type II secretion system protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 315

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 55/143 (38%), Gaps = 3/143 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQHL 61
             +R      + P  LDI++ ++ AG+ V   +  +     +++       RR I     
Sbjct: 147 ADRRANTIRRELPPVLDIMLMALDAGVSVDQCMRYVAGVVRRTAPVTGKVLRRHIADIDA 206

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+    ++ R+ + + L E    +  I      GG LS  L   S  L D++   A+ Q 
Sbjct: 207 GMPYDAALDRLGQRLGLDEGQDLAATIKQALFQGGELSTTLRRFSVDLSDKRMGMAREQV 266

Query: 122 LSMEAKASAWIIGSLPFCVSTLV 144
                + +  +I      +  ++
Sbjct: 267 GRKAPQLTLVMILFFMPVLLIVL 289


>gi|85711971|ref|ZP_01043025.1| Flp pilus assembly protein TadC [Idiomarina baltica OS145]
 gi|85694157|gb|EAQ32101.1| Flp pilus assembly protein TadC [Idiomarina baltica OS145]
          Length = 264

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 62/145 (42%), Gaps = 1/145 (0%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           +   + + A+   + P+  D++   + +GLP+  A+  +   SS   + +E   V +   
Sbjct: 108 QRQFRSKQARIYRELPDFSDLLAMMLASGLPLIPALDRVSKASSMGYLANEISYVGQQIR 167

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L+ + + +     +  +S +  +++   Q G +L+EAL   S  LRD +   A+ +
Sbjct: 168 RGRDLTSAFTGLADLYRVNALSEWCKLLNRGYQQGNSLTEALLFFSEQLRDEQLNLAEKK 227

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145
           A     K    ++         ++ 
Sbjct: 228 AQEAPVKLLLPLLSCFFPVNFLVIL 252


>gi|126176110|ref|YP_001052259.1| type II secretion system protein [Shewanella baltica OS155]
 gi|125999315|gb|ABN63390.1| type II secretion system protein [Shewanella baltica OS155]
          Length = 422

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/172 (9%), Positives = 50/172 (29%), Gaps = 8/172 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMV 73
           D       I   + AG+P+   + ++          E    ++     G+ LS++     
Sbjct: 83  DIAVITRQIATMLAAGVPLVTTIELLGRGHEKAKVRELLGNILSEIQSGIPLSDA----- 137

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +        +    +  G+L      ++      + +K+K++       A   + 
Sbjct: 138 MRPHRRYFDELYVDLVAAGEHSGSLDLVFDRVATYREKSEALKSKIKKAMFYPAAVVIVA 197

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183
             +   +   V             +      ++L ++        + +  +I
Sbjct: 198 ILVTSLLLLFVVPQFEEIFKGFGAELPAFTQLVLHISRGLQSSWYIFLAAII 249


>gi|158521062|ref|YP_001528932.1| general secretion pathway protein F [Desulfococcus oleovorans Hxd3]
 gi|158509888|gb|ABW66855.1| general secretion pathway protein F [Desulfococcus oleovorans Hxd3]
          Length = 409

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/166 (10%), Positives = 54/166 (32%), Gaps = 6/166 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +   A   +   V +G P+  A+  ++ Q+ S  ++    R+ E+   G S +++++   
Sbjct: 71  ELATATRQLATLVGSGFPLVSAIYTLIPQAGSAALKKALSRIKESVEEGNSFADALAGFP 130

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G L   L  L+ +   ++  + ++ A+         + 
Sbjct: 131 DIFSP-----IYINMVRAGEASGTLEVVLERLADLQETQQAQRNRITAILAYPLVMTVLG 185

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             +   +   +          +         + +A +  L     +
Sbjct: 186 SGVLVFLLVKIVPQLVSVFEDMNQVLPVPTRIVIATSDFLQSYWWV 231


>gi|115361041|ref|YP_778178.1| type II secretion system protein [Burkholderia ambifaria AMMD]
 gi|115286369|gb|ABI91844.1| type II secretion system protein [Burkholderia ambifaria AMMD]
          Length = 323

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 69/162 (42%), Gaps = 4/162 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   I  R     +DFP+ALD++   V AGL +  A+  +  +    S+ V  E   ++ 
Sbjct: 156 LSRRIATRQRVIFEDFPDALDLLTVCVEAGLGLDAALMRVSEELRFRSEVVAGELDLLLL 215

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++        ++++  F  ++    + G +++E+L  LS +LR R+ M+A
Sbjct: 216 EMRSGFTKETALRNFALRTGVEDIESFCAMLIQADRFGTSIAESLRVLSDMLRTRRRMRA 275

Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158
           + +A  +        I    P  +  L+         VL+  
Sbjct: 276 EERAAKIALKLLFPLIFNIFPALMCVLLGPAMIHVYRVLLPS 317


>gi|293408196|ref|ZP_06652036.1| hypothetical protein ECEG_03130 [Escherichia coli B354]
 gi|291472447|gb|EFF14929.1| hypothetical protein ECEG_03130 [Escherichia coli B354]
          Length = 400

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 55/182 (30%), Gaps = 22/182 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLADKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +   G +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPVLTQGIMTLADFSGEWGWLLVLFGFLLAIANKLLM 235

Query: 180 RL 181
           R 
Sbjct: 236 RR 237


>gi|323529156|ref|YP_004231308.1| Type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1001]
 gi|323386158|gb|ADX58248.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1001]
          Length = 293

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 68/146 (46%), Gaps = 1/146 (0%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + + ++R A+ L      LD +  +V AGL ++ A+   V +    P R E   V+    
Sbjct: 136 RDVRRRRVAQILKHLSIYLDFLTLAVEAGLNINGAIQKAVEKGPAGPFRWELEHVLRDLK 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            GL+ +E++ R+   + ++EV+ F   +    ++G  L+++L   S   R  +  +A+ Q
Sbjct: 196 SGLNRTEALRRLDDRLRIKEVTNFVGAVVQAERMGAGLAKSLRFQSEQRRSERFQRAEKQ 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146
           A+    K    ++  +      ++ F
Sbjct: 256 AMEAPVKLVFPLLVFIFPITFIVLGF 281


>gi|229590683|ref|YP_002872802.1| general secretion pathway protein F/S [Pseudomonas fluorescens
           SBW25]
 gi|229362549|emb|CAY49456.1| general secretion pathway protein F/S [Pseudomonas fluorescens
           SBW25]
          Length = 402

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 60/183 (32%), Gaps = 19/183 (10%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
            +D   A   +   + A LP+  A++  V Q+    +      V      G+ L+E+++ 
Sbjct: 62  DNDLAWATRQLASLLGASLPLEAALSATVEQAEKKHIAQTLSAVRADVRGGMRLAEALAT 121

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             R     +       +    +  G+L++ +  L+  + +R N+++K+    +       
Sbjct: 122 RPR-----DFPAIYRALIAAGEESGDLAQVMERLADYIEERNNLRSKILTAFIYPGVVGL 176

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL------------GVAAAFMLIGIMVM 179
           +  ++   + + V        +    D  G  L                   M  G    
Sbjct: 177 VSIAIVIFLLSYVVPQVVSAFSQARQDLPGLTLAMLNASDFIRAWGVWCFGLMAAG-FWG 235

Query: 180 RLM 182
             +
Sbjct: 236 WRL 238



 Score = 35.9 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/129 (10%), Positives = 33/129 (25%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+  A+       S+   S              + E ++        
Sbjct: 271 FASTLAILGAAGVPLLRALEAARQTLSNDRLSLSV-----SDATAKVREGVNLAPALRVE 325

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G+L   L   ++ L      +A      +E      +   +  
Sbjct: 326 NVFPPVLIHLIASGEKTGSLPPMLERAAQTLSRDIERRAMGMTALLEPLMIVVMGAVVLV 385

Query: 139 CVSTLVYFT 147
            V  ++   
Sbjct: 386 IVMAVLLPI 394


>gi|169831115|ref|YP_001717097.1| type II secretion system protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637959|gb|ACA59465.1| type II secretion system protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 402

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 76/189 (40%), Gaps = 17/189 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQ 59
           ++  + +     L D       +   + AG+P++ A+  +  Q ++  +R+    V    
Sbjct: 50  VRGAVFRSRKVGLGDLTLFSRQLTSMLDAGIPLTRALFTLSKQIANPTLRNAVSDVARNV 109

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G S S+++S           S     ++   ++GG LSEAL+ LS  L   K+++  V
Sbjct: 110 EGGQSFSDALSAHP-----GIFSTLFVSMTRAGEVGGFLSEALSRLSTQLEQEKSIRDHV 164

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG---- 175
           ++ S    A   ++G     V  ++YF  P +M      P G +L       +++     
Sbjct: 165 RSASFYPIA---VLGFAGVVVLAMLYFLVPVFMQFF---PEGMVLPLPTRVVVVLSNSLH 218

Query: 176 -IMVMRLMI 183
               +  + 
Sbjct: 219 QWWFIWAIT 227



 Score = 35.9 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 41/139 (29%), Gaps = 7/139 (5%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                  +   +  G+P+  A+        S  V      +IE    G +L+  +     
Sbjct: 267 MARFARTLATLLTGGIPILQALEASGPASGSQKVAEAVHGIIEQIQEGKNLAGPMGDSGI 326

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           + P+         +    +  G L + L  ++    +     AK     +E      I  
Sbjct: 327 FPPM------MVDMVAVGEESGTLPDLLGRIAAFYEEEVATMAKGLTALLEPLMLVVIGI 380

Query: 135 SLPFCVSTLVYFTSPGYMN 153
            +   V +L        ++
Sbjct: 381 IIAVVVISLYLPIFTAVIS 399


>gi|331004876|ref|ZP_08328293.1| MSHA biogenesis protein MshG [gamma proteobacterium IMCC1989]
 gi|330421330|gb|EGG95579.1| MSHA biogenesis protein MshG [gamma proteobacterium IMCC1989]
          Length = 408

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 50/174 (28%), Gaps = 6/174 (3%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSL 65
           KR     ++       +    +AGLP+   +  +    SS P++     V      G+SL
Sbjct: 62  KRKKVSDEELVMFCRQMYTINKAGLPLMQGLESLSVSISSGPLQECLIDVTHRLETGVSL 121

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S +             +     +    +  G L    A +   +      K  +++    
Sbjct: 122 SSA-----MGYHRHIFNNLFLGMIKIGEETGKLDNIFAQMGVYISRDIETKKSIKSALRY 176

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
                  +    F V+ +V        +    +      + +  +   +    +
Sbjct: 177 PSFVLSAMVVALFVVNLMVIPAFADMFSRFDAELPLPTRILIGTSQFFVDYWWL 230


>gi|312135609|ref|YP_004002947.1| Type II secretion system F domain-containing protein
           [Caldicellulosiruptor owensensis OL]
 gi|311775660|gb|ADQ05147.1| Type II secretion system F domain protein [Caldicellulosiruptor
           owensensis OL]
          Length = 403

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 48/147 (32%), Gaps = 9/147 (6%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSES 68
              + D           + AG+ +   + V+  Q            + E    G  LS +
Sbjct: 59  KATVKDLSIFCRQFATMLSAGISILSCLDVLKQQYKGRSFGKVIDDLYEKVERGTLLSAA 118

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           +    R+ P          +    ++ G++ +++  ++        ++ K+    M    
Sbjct: 119 MREHPRFFPP-----ILVNMIEAGEVAGSIDKSMDKMAVHFEKELKLRQKIVNALMYPA- 172

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVL 155
              +IG     +  L+ +  P ++ + 
Sbjct: 173 --IVIGVAVIVLIILLTYVIPTFVGLF 197



 Score = 42.4 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 40/131 (30%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+ +  A+       S+  +  EF RVIE    G  LS  I  M     
Sbjct: 271 FTRTLATLLNAGVSLITALDTTKNILSNAYIEKEFDRVIERVKGGEGLSYPIEDMG---- 326

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                    ++    +  G L   L   +    +    +        E      +   + 
Sbjct: 327 --IFPRLMNIMLKTGEETGQLEYMLEKAADYYENEVENQVTRLTSLFEPVMIVLLALMVG 384

Query: 138 FCVSTLVYFTS 148
           F +++++    
Sbjct: 385 FLLASIIMPMF 395


>gi|283457757|ref|YP_003362345.1| Flp pilus assembly protein TadC [Rothia mucilaginosa DY-18]
 gi|283133760|dbj|BAI64525.1| Flp pilus assembly protein TadC [Rothia mucilaginosa DY-18]
          Length = 310

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 59/156 (37%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   + KR  + + +FP   +++  SV AG     A+  I   S   +  EF  ++    
Sbjct: 155 LGEAVTKREKQLVAEFPALAEMMALSVTAGESALAALERICLTSRGELAREFSEILAQTR 214

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+SL  ++        +  +S F   I+V  + G  L++ L   ++ +RD    +    
Sbjct: 215 TGVSLLSALQEFAERTRVPALSRFVEGIAVAIERGTPLADVLRAQAQDVRDNAKRELMET 274

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
           A   E    A ++  +         F     M +  
Sbjct: 275 AGKKEIAMLAPVVFFILPLTVIFAVFPGLSLMRLNF 310


>gi|17388923|gb|AAF36471.2|AF127982_1 GspF [Burkholderia cenocepacia]
          Length = 405

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 12/187 (6%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L   R     +        +   + AGLP+ +A+ V+  Q+  D +R     +     
Sbjct: 55  QRLAFGRKLSQREQ-AILTRQLASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++ +  R     +       +    +  G L   L+ L+  +     +K K+ 
Sbjct: 114 GGHSLANALGQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIMV 178
                      +       V+ L+ +  P  +NV  +  +   +L V   A    +    
Sbjct: 169 LAFTYPG---IVTLIAFGIVTFLLSYVVPQVVNVFASTKQQLPILTVVMMALSEFVRHWW 225

Query: 179 MRLMINF 185
             ++I  
Sbjct: 226 WAILIAV 232



 Score = 34.7 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       S+          I     G +LS +++ +  + P
Sbjct: 274 FASTLGILTAAGVPILRALQAAGETLSNRAMRANIDDAIVRVREGSALSRALNNVKTFPP 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G+++  L   +         +       +E      + G + 
Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAAEGEARELERRTMFLTSLLEPLLILAMGGIVL 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 VIVLAVMLPI 397


>gi|262401508|ref|ZP_06078075.1| type II secretory pathway component PulF [Vibrio sp. RC586]
 gi|262352223|gb|EEZ01352.1| type II secretory pathway component PulF [Vibrio sp. RC586]
          Length = 408

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/164 (8%), Positives = 42/164 (25%), Gaps = 4/164 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +        +    +AG+P+  ++  +     +    E    +  +              
Sbjct: 67  EVLVIFCRQMFSLTKAGVPLLRSMRGLTQNCHNKQLKEALEAVCNELTNGR----SLSAS 122

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
             +     S     +    +  G L +AL  L+         + +++            +
Sbjct: 123 MQLHPGVFSPLFVSMIQVGENTGRLDQALLQLANYYEQEVETRKRIKTAMRYPIFVISFV 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
               F ++  V        +    D      + +A +   +   
Sbjct: 183 VIAMFILNVKVIPQFTSMFSRFGADLPLPTRILIATSDFFVNYW 226



 Score = 40.1 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/135 (8%), Positives = 37/135 (27%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         + AG+P++ ++A+      +    +         +   +   +S  
Sbjct: 269 RAQLSRFSRTFSLMLSAGVPLNQSLALSAEAIDNKYLEQKIL-----EMKSQIESGVSIS 323

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           V  + +   +     +    +  G + E L  +S       +   K     +E     ++
Sbjct: 324 VTAINVNIFTPLVIQMITVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLVFV 383

Query: 133 IGSLPFCVSTLVYFT 147
              +      +    
Sbjct: 384 AAMVLVLALGIFLPM 398


>gi|120600491|ref|YP_965065.1| general secretion pathway protein F [Shewanella sp. W3-18-1]
 gi|146294649|ref|YP_001185073.1| general secretion pathway protein F [Shewanella putrefaciens CN-32]
 gi|120560584|gb|ABM26511.1| general secretion pathway protein F [Shewanella sp. W3-18-1]
 gi|145566339|gb|ABP77274.1| general secretion pathway protein F [Shewanella putrefaciens CN-32]
 gi|319424806|gb|ADV52880.1| general secretion pathway protein F [Shewanella putrefaciens 200]
          Length = 407

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 60/177 (33%), Gaps = 8/177 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            +       I   V AGLP+ +++  +  Q   D + S    V      G S ++S++  
Sbjct: 67  AELALITRQIATLVAAGLPIEESLKAVGQQCEKDRLASMIMAVRSRVVEGYSFADSLAEF 126

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G+L   L  L+     R+ +K+K+Q   +       +
Sbjct: 127 P-----HIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKLQQAMIYPIVLTVV 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML--IGIMVMRLMINFDV 187
              +   +   V     G    +  +        ++A+  +   G+ V+  ++   V
Sbjct: 182 AIGVISVLLAAVVPKVVGQFEHMGAELPATTRFLISASDFVQNYGLFVVLAIVLLAV 238


>gi|260773648|ref|ZP_05882564.1| MSHA biogenesis protein MshG [Vibrio metschnikovii CIP 69.14]
 gi|260612787|gb|EEX37990.1| MSHA biogenesis protein MshG [Vibrio metschnikovii CIP 69.14]
          Length = 406

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/168 (11%), Positives = 49/168 (29%), Gaps = 6/168 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
           +        +    +AG+P+  ++  +    S+  ++     V      G SLS      
Sbjct: 66  EVLVIFCRQLYSLTKAGVPILRSMRGLTQNCSNKQLQRALEDVGRELTNGRSLS-----A 120

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              M  +  S     +    +  G L +AL  L+         + +++            
Sbjct: 121 AMQMHSRVFSPLFVSMINVGENTGRLDQALLQLANYYEQEVETRKRIKTAMRYPTFVISF 180

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           I    F ++  V        +    +      + +  +   +   ++ 
Sbjct: 181 ITLAMFILNLKVIPQFTTMFSRFGVELPLPTRILIGMSNFFVNYWMVM 228



 Score = 40.1 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/135 (9%), Positives = 39/135 (28%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         ++AG+P++ ++++      +    E R +     +    S S++  
Sbjct: 268 RAQLARFSRTFSLMLKAGVPLNQSLSLSAEALENKFL-ENRILKMKSEIEAGTSVSVTAA 326

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +           +    +  G + E L  ++       + + K     +E      +
Sbjct: 327 NANIFTP----LVLQMIAVGEETGRIDELLLEVADFYDREVDYELKTLTARIEPILLTLV 382

Query: 133 IGSLPFCVSTLVYFT 147
            G +      +    
Sbjct: 383 AGMVLVLALGIFLPM 397


>gi|28057911|gb|AAO29753.1| fimbrial assembly protein [Xylella fastidiosa Temecula1]
          Length = 420

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 52/166 (31%), Gaps = 6/166 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   ++AG+P+  A+ ++   Q +  +R+   ++      G SL ESIS+ 
Sbjct: 80  KDIAFFSRQMATMMKAGVPIVGALDILANGQKNPRMRTMVNQIKNDIEGGSSLYESISKH 139

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L  ++    + + +K K++       A   +
Sbjct: 140 P-----VYFDELYRNLVRAGERAGVLETVLDTVASYKENIEALKGKIRKALFYPVAIVAV 194

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
              +   +   V             +      + V  +  +     
Sbjct: 195 ALIVSSILLIYVVPQFEDVFKGFGAELPAFTQMIVNFSNFMQRWWW 240



 Score = 37.8 bits (86), Expect = 0.80,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 44/136 (32%), Gaps = 5/136 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                        + RAG+P+ +A+ ++ G + +     +   +      +S+  SI+  
Sbjct: 283 NSALARFSRTTAVTFRAGVPLVEALGIVAGATGN---KVYSDAVFRMRDDVSVGYSINMS 339

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           +R + +         ++   +  G L   L  ++       +      +  +E     +I
Sbjct: 340 MRQVGI--FPHMVVQMASIGEEAGALDAMLFKVAEYYEQEVSNAVDGLSSLLEPLIMVFI 397

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V  +     
Sbjct: 398 GVIVGGMVIAMYLPIF 413


>gi|183985115|ref|YP_001853406.1| hypothetical protein MMAR_5146 [Mycobacterium marinum M]
 gi|183178441|gb|ACC43551.1| conserved hypothetical membrane protein [Mycobacterium marinum M]
          Length = 267

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 60/172 (34%), Gaps = 1/172 (0%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                AL+I+V  +R G     A  V   ++  PV +  R V     LG  ++  +    
Sbjct: 92  RALEAALEILVGELRVGAHPVRAFGVAADETDGPVAAAMRGVAAHARLGADVTGGLRAAA 151

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR-ILRDRKNMKAKVQALSMEAKASAWI 132
           R   L        V    +   G     L   ++  +  R+   AKV A    A+ASA I
Sbjct: 152 RRSALPSHWERLAVYWQLASDHGLAIATLMRAAQRDVAQRQRFSAKVSAGLAGARASAGI 211

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +  LP     L        +  L+    G  LL V  A    G+     + +
Sbjct: 212 LAGLPVLGVVLGQLIGAQPLAFLLGGHLGGWLLVVGLALAAGGLWWSDRITD 263


>gi|37522234|ref|NP_925611.1| pilin biogenesis protein [Gloeobacter violaceus PCC 7421]
 gi|35213234|dbj|BAC90606.1| pilin biogenesis protein [Gloeobacter violaceus PCC 7421]
          Length = 410

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 52/143 (36%), Gaps = 6/143 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+ +  ++ V+  QS++  ++    +V      G SL+ S+ +  +   
Sbjct: 74  FARQLAAMTSAGVSLVRSLTVLEEQSTNRKLKKVLTQVSFDVQQGSSLAASMRKFPQA-- 131

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    + GG L + L  LS++L D+  ++ +V++          +   + 
Sbjct: 132 ---FDNLFVAMIQAGEAGGLLDQVLDRLSKLLEDQDRLQRQVRSALAYPVTVLILAVIIF 188

Query: 138 FCVSTLVYFTSPGYMNVLINDPR 160
             + T +          L  +  
Sbjct: 189 LAMVTFILPVFKDIFKQLGGELP 211



 Score = 41.6 bits (96), Expect = 0.050,   Method: Composition-based stats.
 Identities = 15/133 (11%), Positives = 38/133 (28%), Gaps = 5/133 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
                   VR+G+P+  A+ ++   + + V ++            SL     +  +  P 
Sbjct: 279 FCRTFGSLVRSGVPILSALEIVRDTAGNAVIADAVDEARRVIREGSLISPTLKKEKAFPP 338

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                 +  +    +  G L   L  ++           K     +E      + G +  
Sbjct: 339 -----MAVQMISVGEESGELDSMLMKVADFYESEVEQAVKALTSLLEPIMIVVLGGLVGS 393

Query: 139 CVSTLVYFTSPGY 151
            +  +       +
Sbjct: 394 VILAMYLPLFTVF 406


>gi|167584996|ref|ZP_02377384.1| general secretion pathway protein F [Burkholderia ubonensis Bu]
          Length = 405

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 59/188 (31%), Gaps = 12/188 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +   + +R              +   + AGLP+ +++ V+  Q+  D +R     +    
Sbjct: 59  LGRKLSQREQAI------LTRQLASLLIAGLPLDESLGVLTEQAERDYIRELMAAIRAEV 112

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G SL+ ++++  R     +       +    +  G L   L+ L+  +     +K K+
Sbjct: 113 LGGHSLANALAQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEQSNALKQKI 167

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
                       I   +   + + V                   ++ +A +  +      
Sbjct: 168 LLAFTYPGIVTLIAFGIVTFLLSYVVPQVVNVFASTKQQLPILTVVMMALSDFVRHWWWA 227

Query: 180 RLMINFDV 187
            ++    V
Sbjct: 228 IVIAAVLV 235



 Score = 34.7 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       S+          I     G +LS +++ +  + P
Sbjct: 274 FASTLGILTAAGVPILRALQAAGETLSNRAMRANIDDAIVRVREGSALSRALNNVKTFPP 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G+++  L   +         +       +E      + G + 
Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAAEGEARELERRTMFLTSLLEPLLILAMGGIVL 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 VIVLAVMLPI 397


>gi|170723339|ref|YP_001751027.1| general secretion pathway protein F [Pseudomonas putida W619]
 gi|169761342|gb|ACA74658.1| general secretion pathway protein F [Pseudomonas putida W619]
          Length = 400

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 53/171 (30%), Gaps = 7/171 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R              +     AG+P+ DA+A +  Q   P       V     L   L 
Sbjct: 53  RRQRLSRAQLCELTRQLATLTGAGIPLVDALATLERQLRQPALH-GVLVALRGSLAEGLG 111

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            + S   +  P          +    +  G L++ L  L+  L   +  + K +   +  
Sbjct: 112 LARSLARQGAPFTG---LYCALVEAGERSGRLAQVLTRLADHLEQVQRQQHKARTALIYP 168

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
                ++G     V  L+ F  P       +  +   L+      +  G++
Sbjct: 169 ---CVLMGVSLAVVIGLMTFVVPKLTEQFAHAGQSLPLITSLLIGLSQGLV 216



 Score = 38.9 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/128 (10%), Positives = 37/128 (28%), Gaps = 7/128 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +     +G+ + +A+ V      +        +V +    G SL  ++         Q
Sbjct: 270 RSLAILTSSGVALLEALQVATETVGNRRIRLAMEQVRQQVQGGTSLHRALD------GCQ 323

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
           +       +    +  G L++ L  ++         +        E      +   + F 
Sbjct: 324 QFPPLLVNMVGSGEASGTLADMLERVADDQERGFARQVDTAMALFEPLMILVMGAVVLFI 383

Query: 140 VSTLVYFT 147
           V  ++   
Sbjct: 384 VLAVLLPI 391


>gi|239827897|ref|YP_002950521.1| type II secretion system protein [Geobacillus sp. WCH70]
 gi|239808190|gb|ACS25255.1| type II secretion system protein [Geobacillus sp. WCH70]
          Length = 403

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 62/175 (35%), Gaps = 6/175 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
            DF   L      ++AG+ + D+  ++  Q+    +++    V E+   G  LS + ++ 
Sbjct: 63  QDFVIYLRQFATLIKAGVSIVDSTRILASQTESKALKNALMEVEESLRAGNPLSAAAAKH 122

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R  P          +    + GGN+ E L  L+         K K+ +      A A I
Sbjct: 123 PRIFP-----AMFVNMVKAGEAGGNMDETLERLADHFEKIHRTKQKIVSALAYPIAVAII 177

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
             ++   +   V  T          +        + A+ ++     + +++   +
Sbjct: 178 AVAVVIFLLVTVVPTFVAMFADFHAELPTITKFVLRASEVMQTYWWLVVIVFIAI 232


>gi|154505643|ref|ZP_02042381.1| hypothetical protein RUMGNA_03182 [Ruminococcus gnavus ATCC 29149]
 gi|153794082|gb|EDN76502.1| hypothetical protein RUMGNA_03182 [Ruminococcus gnavus ATCC 29149]
          Length = 407

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 45/152 (29%), Gaps = 6/152 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-----GQSSDPVRSEFRRVIE 57
              K R  +   D+P  +      + AG+P   A   I       +++  V  E    + 
Sbjct: 251 QKKKARRHQLAMDYPEFISTFTLYLGAGMPARRAWFQIASVYRQQENTRYVYEEMVYTMR 310

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMK 116
               G   SE          L     F+ ++S    +    L+E L   +    + +   
Sbjct: 311 EMQRGTPESECYEHFGMRCGLPVYRKFAVMLSQNLRKGTKGLAELLQREAAGAFEERKAA 370

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
           A+        +    +   L   +  +V    
Sbjct: 371 ARKLGEETSTRLLGPMFLMLGVVLMIIVVPAF 402


>gi|148976511|ref|ZP_01813207.1| type II secretory pathway, component EpsF [Vibrionales bacterium
           SWAT-3]
 gi|145964087|gb|EDK29344.1| type II secretory pathway, component EpsF [Vibrionales bacterium
           SWAT-3]
          Length = 407

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 52/178 (29%), Gaps = 15/178 (8%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           D       I   V++G+P+ + +  +  QS  P        + ++               
Sbjct: 68  DLALITRQISTLVQSGMPLEECLKAVAEQSEKPRIRTMLLAVRSKVT----EGYSLADSL 123

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                        +    +  G+L   L  L+    +R+ M++K+    +          
Sbjct: 124 ADYPHIFDELFRAMVAAGEKSGHLDAVLERLADYAENRQKMRSKLLQAMIYPVVLVVFAV 183

Query: 135 SLPFCVSTLVYFTS-----------PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++   +   V               P     L+         G+    ++IG++V+  
Sbjct: 184 TIVSFLLATVVPKIVEPIIQMGQELPQSTQFLLASSEFIQDWGIQLLLLIIGVIVLIK 241


>gi|256752526|ref|ZP_05493382.1| type II secretion system protein [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256748592|gb|EEU61640.1| type II secretion system protein [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 403

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/170 (12%), Positives = 57/170 (33%), Gaps = 6/170 (3%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSE 67
               + D           + AG+P+  ++A +  Q  +  +++  R V E    G +LS+
Sbjct: 58  KKVKVKDIAVFCRQFATLINAGIPIVTSLATMREQVENKRLKNALREVYEEVQKGRTLSD 117

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++ R     P+         +    ++ G L + +  ++        +  K+++      
Sbjct: 118 AMKRHSDVFPM-----LLYNMVEVGEVSGTLDKVMNEMAEHYEKENELNQKIKSALTYPV 172

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
             + +   +   + T V     G       +      + +A +  +    
Sbjct: 173 IVSIVAILVVIFLLTNVLPIFVGMFENAEVELPLPTRILIAISSFISQYW 222



 Score = 35.9 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 46/131 (35%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+P+  A+ V+     + + +E  ++  E    GL LSE + R+  + P
Sbjct: 271 FTRTLGTLISAGVPLMKAMEVVEKVIGNTIVAEGLKKAQEDIKKGLPLSEPLKRIGIFPP 330

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         +    +  G+L   L   +       +         +E      +   + 
Sbjct: 331 M------VIQMIGIGESSGSLDSILNKTADFYDGEVDTAVSQMTTLLEPLIIVMLATVVG 384

Query: 138 FCVSTLVYFTS 148
           F V +++    
Sbjct: 385 FIVISIIMPLF 395


>gi|161524901|ref|YP_001579913.1| type II secretion system protein [Burkholderia multivorans ATCC
           17616]
 gi|189350349|ref|YP_001945977.1| pilus assembly protein [Burkholderia multivorans ATCC 17616]
 gi|160342330|gb|ABX15416.1| type II secretion system protein [Burkholderia multivorans ATCC
           17616]
 gi|189334371|dbj|BAG43441.1| pilus assembly protein [Burkholderia multivorans ATCC 17616]
          Length = 330

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 60/158 (37%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57
           ++     R     D+ P  +D++      GL +  ++ V+       +    SE      
Sbjct: 168 VQRRAAARRQCVDDELPLFVDMLRLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEVGVAQR 227

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+ R+      +++     ++    + GG + E L      LR+ +    
Sbjct: 228 QFVAGRTREQSMQRLSGGFDNEDLRAIVRLMVQVDKHGGAVQEPLKQFGDRLRETRRAML 287

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +   +  K +  ++ +L   +  L+    PG++ V+
Sbjct: 288 RERIGRLTVKMTGVMVLTLLPAL--LIVTAGPGFLAVM 323


>gi|283787697|ref|YP_003367562.1| tight adherence protein C [Citrobacter rodentium ICC168]
 gi|282951151|emb|CBG90842.1| putative tight adherence protein C [Citrobacter rodentium ICC168]
          Length = 283

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 65/145 (44%), Gaps = 2/145 (1%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--TQ 59
           K +I  R  +  +D P  +DI+   V++G+ + + +  +   +          +     +
Sbjct: 124 KMIIDSRVRRICNDLPYIIDIMAICVQSGMTIENTIRYLAENTETINPDISVLLARTIMK 183

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                +SE++  +   +P QE+   ++ +    + G ++   L +LSR +R+ + +    
Sbjct: 184 MEVSGMSEALDLLYNEVPSQEIRMLASTLQQSIKFGSSIYLLLLDLSREIREMQLLAIDE 243

Query: 120 QALSMEAKASAWIIGSLPFCVSTLV 144
           +  S+ AK S  +I  + F +  LV
Sbjct: 244 KISSLAAKMSLPMIICIMFPILVLV 268


>gi|261211293|ref|ZP_05925582.1| general secretion pathway protein F [Vibrio sp. RC341]
 gi|260839794|gb|EEX66405.1| general secretion pathway protein F [Vibrio sp. RC341]
          Length = 406

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 64/183 (34%), Gaps = 20/183 (10%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V++G+P+ + +  +  QS    +R+    V      G +LS+S+    
Sbjct: 67  DLALITRQLSTLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G+L   L  L+    +R+ M++K+Q   +       ++
Sbjct: 127 -----HVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPV---VLV 178

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-----------AFMLIGIMVMRLM 182
                 V+ L+    P  +   +   +                     ++LIG M++  +
Sbjct: 179 VFAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGIWLLIGFMLLIYL 238

Query: 183 INF 185
           + +
Sbjct: 239 VRW 241


>gi|300694107|ref|YP_003750080.1| type II secretion system protein [Ralstonia solanacearum PSI07]
 gi|299076144|emb|CBJ35457.1| Type II secretion system protein [Ralstonia solanacearum PSI07]
          Length = 324

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 63/146 (43%), Gaps = 5/146 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLSES 68
             D+ P  +D++      GL +  ++ VI  +       +  EF R  +    G    ++
Sbjct: 168 VDDELPAMVDMLRLLQGVGLSIDQSLQVIANEFHGMLPVLAGEFGRANQQFASGRPREQT 227

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           + R+ R    +++    T+++   + GG + E L      L++ +  + K +   +  K 
Sbjct: 228 LLRIARLFDNEDLKGLITLLTQVDRFGGAVQEPLRQFGVRLQENRRSRLKERVGKLTVKM 287

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +  ++ +L   +  L+    PG+M+V
Sbjct: 288 TVVMVLTLLPAL--LIITAGPGFMSV 311


>gi|55378047|ref|YP_135897.1| hypothetical protein rrnAC1249 [Haloarcula marismortui ATCC 43049]
 gi|55230772|gb|AAV46191.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 678

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/152 (11%), Positives = 56/152 (36%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++     +      L  +  +   G+ + ++V V+   SS  +  EF  +    + G SL
Sbjct: 454 QRSRKAIIGKLSENLRKLASANDTGMTLLESVKVVSETSSGKLSDEFETIHAKVNYGTSL 513

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++        +  ++    +I+   +    + + L+  ++   ++ +++ + ++ +  
Sbjct: 514 KDALREFNNKYNVPRLARTVKLIAEAQEASSQIQDVLSTAAQASENQDDIERERKSRTRM 573

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
                 +       V  L+       M+ L  
Sbjct: 574 QTVIILMTYLTLLGVMALLKTQFLDVMSGLAT 605



 Score = 45.1 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/179 (10%), Positives = 54/179 (30%), Gaps = 7/179 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQH 60
                R  +      +++  +      GL   + +  +     +   V  EF+ ++    
Sbjct: 141 FRSSAREREINVLLSDSISFMYALSVGGLNQLEILQSMGKAEDTYGEVAKEFQSIVLETE 200

Query: 61  LG-LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                   ++       P  E+S F T +      GG+++  L +           + + 
Sbjct: 201 YFDTDYRTAVRNQALQTPSDELSQFLTDMLSIINSGGDMTSFLEDQKEKHMRTARQEQEK 260

Query: 120 QALSMEAKASAWII----GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
              ++E     ++       L   +  ++        +++     G + L      +L+
Sbjct: 261 MLETLELFGEMYMTLSLFPLLLIIILVIMSMMGNAQQSLIYGTVYGLIPLTGLGFLVLV 319


>gi|134298819|ref|YP_001112315.1| hypothetical protein Dred_0955 [Desulfotomaculum reducens MI-1]
 gi|134051519|gb|ABO49490.1| hypothetical protein Dred_0955 [Desulfotomaculum reducens MI-1]
          Length = 330

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 70/180 (38%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           ++  K++  FP  +   + ++        A++ +  ++ +P +S F+ ++     G    
Sbjct: 150 RKQEKYISQFPIVVRTFLVALEQKGNARSAISYVAERAPEPSKSLFQTILLKIDSGFEPK 209

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++  + + + +     F  +++     G  L      L+  +     +  +    +   
Sbjct: 210 LALKEITKEIKVSHAHLFEQLLADAYYQGTTLIPQFTRLAGQVDAMNELILENAQTTHAG 269

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           +   +I+  L   ++ ++    P     L  +  G  ++ +    +LIGI+  R+M   D
Sbjct: 270 RIQNFIMHFLVVILAVMLVRVLPESEKYLTQEIGGRTIVLLTFLSVLIGIIFDRMMSKVD 329


>gi|307131915|ref|YP_003883931.1| general secretion pathway protein F [Dickeya dadantii 3937]
 gi|306529444|gb|ADM99374.1| General secretion pathway protein F [Dickeya dadantii 3937]
          Length = 408

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 10/160 (6%)

Query: 7   KRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLS 64
           +R+ +    D       +   V A LP+ +A+  +  QS    + +    V      G S
Sbjct: 60  RRSHRISASDLALLTRQLATLVAAALPLEEALDAVAKQSEKPKLSALMAAVRAKVVEGHS 119

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L+E++                  +    +  G+L   L  L+     R+ M++++Q   +
Sbjct: 120 LAEAMGNFP-----GSFERLYCAMVAAGEASGHLDAVLNRLADYTEQRQQMRSRIQQAMI 174

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
                  +       VS L+    P  +   I+  +   L
Sbjct: 175 YP---CVLTLVAISVVSILLSAVVPKVVEQFIHMKQALPL 211


>gi|134294191|ref|YP_001117926.1| general secretion pathway protein F [Burkholderia vietnamiensis G4]
 gi|134137348|gb|ABO53091.1| general secretion pathway protein F [Burkholderia vietnamiensis G4]
          Length = 405

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 12/187 (6%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L   R     +        +   + AGLP+ +A+ V+  Q+  D +R     +     
Sbjct: 55  QRLAFGRKLSQREQ-AILTRQLASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++ +  R     +       +    +  G L   L+ L+  +     +K K+ 
Sbjct: 114 GGHSLANALGQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIMV 178
                      +       V+ L+ +  P  +NV  +  +   LL +   A    +    
Sbjct: 169 LAFTYPG---IVTLIAFGIVTFLLSYVVPQVVNVFASTKQQLPLLTIVMMALSEFVRHWW 225

Query: 179 MRLMINF 185
             ++I  
Sbjct: 226 WAILIAV 232



 Score = 34.7 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       S+          I     G +LS +++ +  + P
Sbjct: 274 FASTLGILTAAGVPILRALQAAGETLSNRAMRANIDDAIVRVREGSALSRALNNVKTFPP 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G+++  L   +         +       +E      + G + 
Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAAEGEARELERRTMFLTSLLEPLLILAMGGIVL 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 VIVLAVMLPI 397


>gi|332531030|ref|ZP_08406949.1| general secretion pathway protein F [Hylemonella gracilis ATCC
           19624]
 gi|332039511|gb|EGI75918.1| general secretion pathway protein F [Hylemonella gracilis ATCC
           19624]
          Length = 412

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 53/173 (30%), Gaps = 2/173 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65
           +R              +   V AGLP+  A+A +    S D    E +R+I      ++ 
Sbjct: 62  QRRVFNASQLAVWTRQLAGLVAAGLPLERALASLAQDLSQDSGSPEQQRLIAQLRDEVN- 120

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             S          +        +    + GG L + L  L+  L  ++ ++AK+   ++ 
Sbjct: 121 GGSTFARALAQHPRTFDDSYVAVVSAGEQGGQLGQVLDRLADELDGQEVLRAKLMGAALY 180

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
               +     +   + T V        +          +  +  +  L     
Sbjct: 181 PLIVSGFSCVIVAFLLTYVVPQVANAFSSGNRALPALTVFMLGLSAFLRAWGW 233


>gi|26987784|ref|NP_743209.1| general secretion pathway protein F [Pseudomonas putida KT2440]
 gi|24982479|gb|AAN66673.1|AE016295_6 type II secretion pathway protein XcpS [Pseudomonas putida KT2440]
          Length = 400

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 54/171 (31%), Gaps = 7/171 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R              +     AG+P+ DA+A +  Q   P       V     L   L 
Sbjct: 53  RRQRLSRAQLCELTRQLATLTGAGIPLVDALATLERQLRQPALH-SVLVALRGSLAEGLG 111

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            + S   +  P          +    +  G+L++ L  L+  L   +  + K +   +  
Sbjct: 112 LARSLARQGAPFTG---LYCALVEAGERSGHLAQVLTRLADHLEQVQRQQHKARTALIYP 168

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
                ++G     V  L+ F  P       +  +   L+      +  G++
Sbjct: 169 A---VLMGVSLAVVIGLMTFVVPKLTEQFAHAGQSLPLITSLLIGLSQGLV 216



 Score = 38.2 bits (87), Expect = 0.56,   Method: Composition-based stats.
 Identities = 11/127 (8%), Positives = 32/127 (25%), Gaps = 5/127 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +     +G+ + +A+ V      +         +     G +         +  P   
Sbjct: 270 RSLAILCGSGVALLEALQVATETIGNRRIRLAMEQVRQHVQGGTSLHRALDASQQFPP-- 327

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
                  +    +  G L++ L  ++         +        E      +   + F V
Sbjct: 328 ---LLVNMVGSGEASGTLADMLERVADDQERGFARQVDTAMALFEPLMILVMGAVVLFIV 384

Query: 141 STLVYFT 147
             ++   
Sbjct: 385 LAVLLPI 391


>gi|282899279|ref|ZP_06307250.1| type II secretion system protein [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195848|gb|EFA70774.1| type II secretion system protein [Cylindrospermopsis raciborskii
           CS-505]
          Length = 419

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/168 (11%), Positives = 59/168 (35%), Gaps = 8/168 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                   V +G+ +  ++ +I  Q     ++    ++      G++LS+S+ +      
Sbjct: 84  FSRQFATLVNSGVTIIKSLDIISLQCPNPKLKKALNQISTDIKTGINLSDSMKKHPDC-- 141

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    + GG L + L  L+++L D   ++ ++++             ++ 
Sbjct: 142 ---FDALYISMVQAGEAGGVLDDVLHRLAKLLEDLAKLQNQIKSALSYPIFVGCFAIAIA 198

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGH--MLLGVAAAFMLIGIMVMRLMI 183
             ++  +          +  +      +L+  +      G +V+  +I
Sbjct: 199 LAMTIFIIPIFANVFKNMGVELPIITEILISFSQTLNSWGFLVIITLI 246


>gi|114564936|ref|YP_752450.1| type II secretion system protein [Shewanella frigidimarina NCIMB
           400]
 gi|114336229|gb|ABI73611.1| type II secretion system protein [Shewanella frigidimarina NCIMB
           400]
          Length = 419

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/180 (11%), Positives = 53/180 (29%), Gaps = 18/180 (10%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMV 73
           D       I   + AG+P+   + ++          E    ++     G+ LS+++    
Sbjct: 81  DIAMITRQIATMLAAGVPLVTTIELLGRGHEKAKVRELLGTILSDVQSGIPLSDALR--- 137

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +        +    +  G+L      ++      + +K+K++       A   + 
Sbjct: 138 --PHRRYFDDLYVDLVAAGEHSGSLDAVFDRIATYREKAEQLKSKIKKAMFYPAAVVVVA 195

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA------------AFMLIGIMVMRL 181
            ++   +   V        N    +      + +                ++IGI + R 
Sbjct: 196 IAVTSLLLLFVVPQFEDIFNGFGAELPAFTQMIIGISRWLQSSWYFFVIAIVIGIWLFRR 255


>gi|107021572|ref|YP_619899.1| general secretion pathway protein F [Burkholderia cenocepacia AU
           1054]
 gi|116688084|ref|YP_833707.1| general secretion pathway protein F [Burkholderia cenocepacia
           HI2424]
 gi|170731434|ref|YP_001763381.1| general secretion pathway protein F [Burkholderia cenocepacia
           MC0-3]
 gi|254246657|ref|ZP_04939978.1| General secretion pathway protein F [Burkholderia cenocepacia
           PC184]
 gi|11559477|dbj|BAB18790.1| GspF [Burkholderia cepacia]
 gi|105891761|gb|ABF74926.1| General secretion pathway protein F [Burkholderia cenocepacia AU
           1054]
 gi|116646173|gb|ABK06814.1| general secretion pathway protein F [Burkholderia cenocepacia
           HI2424]
 gi|124871433|gb|EAY63149.1| General secretion pathway protein F [Burkholderia cenocepacia
           PC184]
 gi|169814676|gb|ACA89259.1| general secretion pathway protein F [Burkholderia cenocepacia
           MC0-3]
          Length = 405

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 61/180 (33%), Gaps = 11/180 (6%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSE 67
                 +       +   + AGLP+ +A+ V+  Q+  D +R     +      G SL+ 
Sbjct: 61  RKLSQREQAILTRQLASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVLGGHSLAN 120

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++ +  R     +       +    +  G L   L+ L+  +     +K K+        
Sbjct: 121 ALGQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEQSNALKQKILLAFTYPG 175

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIMVMRLMINF 185
               +       V+ L+ +  P  +NV  +  +   +L V   A    +      ++I  
Sbjct: 176 ---IVTLIAFGIVTFLLSYVVPQVVNVFASTKQQLPILTVVMMALSEFVRHWWWAILIAV 232



 Score = 34.3 bits (77), Expect = 7.1,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       S+          I     G +LS +++ +  + P
Sbjct: 274 FASTLGILTAAGVPILRALQAAGETLSNRAMRANIDDAIVRVREGSALSRALNNVKTFPP 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G+++  L   +         +       +E      + G + 
Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAAEGEARELERRTMFLTSLLEPLLILAMGGIVL 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 VIVLAVMLPI 397


>gi|284164351|ref|YP_003402630.1| type II secretion system F domain protein [Haloterrigena turkmenica
           DSM 5511]
 gi|284014006|gb|ADB59957.1| Type II secretion system F domain protein [Haloterrigena turkmenica
           DSM 5511]
          Length = 536

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 56/139 (40%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R        P+ LD +     AG+ +  AV  + G    P+ +E  RV      G  L
Sbjct: 311 RRRIDAVEAAVPDLLDRLASVNEAGMSLVSAVDYVRGSELGPLGAELDRVWADVQWGADL 370

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             + +R+ R +  +  +   T+++      GNL+  L   +R     + ++ + +   +E
Sbjct: 371 QTAFARLERRVRTRTTARVVTLLTEAMNASGNLATVLRIAARQAAADRRLERERKQAMVE 430

Query: 126 AKASAWIIGSLPFCVSTLV 144
                ++   +   +  ++
Sbjct: 431 YTIVVYVSYLVFLFIIAVL 449


>gi|170724682|ref|YP_001758708.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
 gi|169810029|gb|ACA84613.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
          Length = 420

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/172 (10%), Positives = 52/172 (30%), Gaps = 8/172 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMV 73
           D       I   ++AG+P+   + ++          E    ++     G+ LS+++    
Sbjct: 81  DIAMVTRQIATMLQAGVPLVTTIEMLGRGHEKVKMRELLGTILTEIQSGIPLSDALR--- 137

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                Q        +    +  G+L      ++      + +K+K++       A   + 
Sbjct: 138 --PHRQYFDDLYVDLVAAGEHSGSLDAVFERIALYKEKAEALKSKIKKAMFYPAAVVIVA 195

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183
             +   +   V             +      +++ ++ A      +    +I
Sbjct: 196 IGVTTLLLLFVVPQFQEIFAGFGAELPAFTQLVIHISEALQASWYIFAVAII 247


>gi|206561861|ref|YP_002232626.1| type II secretion system protein F [Burkholderia cenocepacia J2315]
 gi|198037903|emb|CAR53848.1| type II secretion system protein F [Burkholderia cenocepacia J2315]
          Length = 405

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 64/185 (34%), Gaps = 12/185 (6%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L   R     +        +   + AGLP+ +A+ V+  Q+  D +R     +     
Sbjct: 55  QRLAFGRKLSQREQ-AILTRQLASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++ +  R     +       +    +  G L   L+ L+  +     +K K+ 
Sbjct: 114 GGHSLANALGQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIMV 178
                      +       V+ L+ +  P  +NV  +  +   +L V   A    +    
Sbjct: 169 LAFTYPG---IVTLIAFGIVTFLLSYVVPQVVNVFASTKQQLPILTVVMMALSEFVRHWW 225

Query: 179 MRLMI 183
             ++I
Sbjct: 226 WAILI 230



 Score = 34.7 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       S+          I     G +LS +++ +  + P
Sbjct: 274 FASTLGILTAAGVPILRALQAAGETLSNRAMRANIDDAIVRVREGSALSRALNNVKTFPP 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G+++  L   +         +       +E      + G + 
Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAAEGEARELERRTMFLTSLLEPLLILAMGGIVL 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 VIVLAVMLPI 397


>gi|323491673|ref|ZP_08096851.1| MSHA biogenesis protein MshG [Vibrio brasiliensis LMG 20546]
 gi|323314035|gb|EGA67121.1| MSHA biogenesis protein MshG [Vibrio brasiliensis LMG 20546]
          Length = 406

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/174 (10%), Positives = 49/174 (28%), Gaps = 6/174 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +        +    +AG+P+  ++  +   SS+    E    +  +              
Sbjct: 66  EVLVIFCRQLYSLTKAGVPLLRSMKGLSQNSSNKQLQEALEAVTQELTNGR----SLSSS 121

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
             M  +  S     +    +  G L +AL  L+         + +++            I
Sbjct: 122 MQMYPKVFSSLFVSMVHVGENTGRLDQALLQLANYYEQEVETRKRIKTAMRYPTFVISFI 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
               F ++  V             D      + ++ +   +   ++  M+   V
Sbjct: 182 VVAMFVLNVKVIPQFTSMFARFGVDLPLPTRILISTSEFFVNYWLL--MVAIMV 233



 Score = 39.3 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 10/135 (7%), Positives = 35/135 (25%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         ++AG+P++ ++A+      +              +  ++    +  
Sbjct: 268 RAQLSRFSRTFALMLKAGVPLNQSLALSAEALGNRYLE-----NRLLEMKAAIEAGSTIS 322

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +     +     +    +  G + E L  ++       +   K     +E      +
Sbjct: 323 STAINSGVFTPLVIQMISVGEETGRIDELLLEVADFYDREVDYDLKTLTARIEPILLVIV 382

Query: 133 IGSLPFCVSTLVYFT 147
            G +      +    
Sbjct: 383 AGMVLVLALGIFLPM 397


>gi|333011492|gb|EGK30906.1| bacterial type II secretion system protein F domain protein
           [Shigella flexneri K-272]
 gi|333021737|gb|EGK40986.1| bacterial type II secretion system protein F domain protein
           [Shigella flexneri K-227]
          Length = 400

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/186 (11%), Positives = 55/186 (29%), Gaps = 22/186 (11%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEA 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKSQRQLTDKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +   G +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGFLLAIANKLLM 235

Query: 180 RLMINF 185
           R     
Sbjct: 236 RRPTRL 241


>gi|94500431|ref|ZP_01306963.1| Type II secretory pathway, component PulF [Oceanobacter sp. RED65]
 gi|94427466|gb|EAT12444.1| Type II secretory pathway, component PulF [Oceanobacter sp. RED65]
          Length = 405

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 54/166 (32%), Gaps = 6/166 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
           +D       +    R+G+P+  AV  +   + +  + +  R V      G +LS+S+   
Sbjct: 66  EDMVIFCRQMHALSRSGIPIMRAVLGLAETTRNTTLENILRHVGNDLSRGNTLSQSLRA- 124

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    +     +    +  GNL EA   L   L   ++ K KV+A           
Sbjct: 125 ----HEHHFTPLFISMIQVGESTGNLDEAFKQLVDHLEMERDTKKKVKAALRYPSMLISA 180

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           I      V+  V  +     N   +D      + +  +   I    
Sbjct: 181 IFIAIIVVNMFVIPSFANVFNRFGSDLPLATSILLNTSNFFIHYWW 226



 Score = 37.8 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 13/134 (9%), Positives = 41/134 (30%), Gaps = 7/134 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
                        +AG+P+  ++ +      +  +      + +    G +LS +     
Sbjct: 270 ALSRFTRTFAMLFKAGVPILQSLDLSAESVGNRYIAQHILDMRQGIERGDTLSRTAYASG 329

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
            + P          +    +  G +   L ++S+   +  + + K  + S+E     ++ 
Sbjct: 330 MFTP------LILQMISVGEESGAVDTLLMDVSQFYDEETDYRVKNISASLEPILLIFMG 383

Query: 134 GSLPFCVSTLVYFT 147
             +      +    
Sbjct: 384 AMILILALGVFLPM 397


>gi|218550225|ref|YP_002384016.1| General secretion pathway protein F [Escherichia fergusonii ATCC
           35469]
 gi|218357766|emb|CAQ90410.1| General secretion pathway protein F [Escherichia fergusonii ATCC
           35469]
          Length = 407

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 8/181 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59
           ++            D       +   V+A +P+   +  +  QS    V+S    +    
Sbjct: 54  LQRRQHAHRRVAAADLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRI 113

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G +LS+S+    R             +    +  G+L   L  L+     R+ +K+++
Sbjct: 114 QEGYTLSDSLREHPR-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRL 168

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIM 177
               +       +   +   + T V        + L +        L+ ++ A    G+ 
Sbjct: 169 LQAMLYPLVLLVVATGVVTILLTAVVPKIIEQFDHLGHALPASTRALIAMSDALQTSGVY 228

Query: 178 V 178
            
Sbjct: 229 W 229


>gi|291279694|ref|YP_003496529.1| general secretion pathway protein F [Deferribacter desulfuricans
           SSM1]
 gi|290754396|dbj|BAI80773.1| general secretion pathway protein F [Deferribacter desulfuricans
           SSM1]
          Length = 402

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 58/159 (36%), Gaps = 6/159 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74
            P+    +   +++G+P+S+++ +   Q ++  V+S    +      G+ LS ++     
Sbjct: 68  LPDVFFQLAMLLKSGIPLSESLKITGNQVNNKKVKSILLALSAKVSEGIKLSVAMQEF-- 125

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                  S     +   S+  G L+E   N++R   +++    K++   +       I  
Sbjct: 126 ---NDYFSDVLINLVRTSEETGRLAETFENVARYEEEKRKSMDKIKVAMIYPMIVLSIGM 182

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
            +   + + V        + +  +        +A    +
Sbjct: 183 GVVGFLLSYVVPKMKNIFSAVNRELPATTKFLIATGNFI 221


>gi|123443825|ref|YP_001007796.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090786|emb|CAL13668.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 274

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 65/157 (41%), Gaps = 4/157 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +K+++ +RT   L   P  +DI    V++G+ + ++++    +           +++   
Sbjct: 117 VKNIVARRTQSLLRSLPFFIDITAACVQSGMTIDNSLSYSAKKFELINADLSLIMLKVTK 176

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +     L  +I    +     E+  F + +      G  + E L  LS+ +R+ + +  +
Sbjct: 177 RAEINGLENAIKEFNQSSTELEIRMFCSALQYSISFGATVYEQLIKLSKDMREMQLLVTE 236

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            +   + AK +  +   +      LV   SPG + ++
Sbjct: 237 EKISKLTAKLTIPLFLFILIPFVVLV--VSPGILELI 271


>gi|307328262|ref|ZP_07607440.1| Type II secretion system F domain protein [Streptomyces
           violaceusniger Tu 4113]
 gi|306886096|gb|EFN17104.1| Type II secretion system F domain protein [Streptomyces
           violaceusniger Tu 4113]
          Length = 308

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 64/167 (38%), Gaps = 3/167 (1%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           +   ++   +RAG    +A+  +       +R  +  V      G  + +++ R+ R   
Sbjct: 132 DLCAVVAGELRAGRHPGEALLAV---DPGHLRERWGLVTAAARFGGEVPDALRRVARLPG 188

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            + ++  +    V    G  L+  L  ++  LR  ++ +  + A    AKA+A  +  LP
Sbjct: 189 AEGLTGVAACWQVAVDEGAGLAAGLDRVAAALRAERDQRDSLDAKLAGAKATAAALAVLP 248

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                L        ++ L++ P G   L V       G++    M+ 
Sbjct: 249 VVGLVLGGLLGSNPLHELLHTPAGLSCLLVGGLLEWTGLVWTGRMVR 295


>gi|239994225|ref|ZP_04714749.1| type IV pilus biogenesis protein PilC [Alteromonas macleodii ATCC
           27126]
          Length = 374

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/154 (9%), Positives = 46/154 (29%), Gaps = 6/154 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             I   + AG+ +  ++ +I    ++  +R     + +    G  LS ++ +        
Sbjct: 42  RQIATMLAAGVTLIQSLEMISQGHANSSMRKLLGEITDEVKAGNPLSSALRKHPL----- 96

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                   +    +  G L      ++      + +K+K++       A   +   +   
Sbjct: 97  YFDDLYCDLVYTGEQSGALETIYDRIATYKEKAEALKSKIKKAMFYPIAVLVVAFIVTTI 156

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           +   V        +    +        +A +  +
Sbjct: 157 LLIFVVPQFEEIFSSFGAELPAFTQFVLAISRFV 190



 Score = 38.2 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 38/130 (29%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +  +  AG+P+  A+    G S + V  E    +  +  G        R       
Sbjct: 244 FTRTLATTFAAGVPLIGALESAAGASGNAVYREAILYMRKEVAGGMPMHVAMRA-----T 298

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           Q      T +    +  G + E L+ ++ I     +         +E    A +   +  
Sbjct: 299 QVFPDMVTQMIAIGEESGAVDEMLSKIATIYEAEVDDMVDGLTSLLEPMIMAVLGVVIGG 358

Query: 139 CVSTLVYFTS 148
            +  +     
Sbjct: 359 LIVAMYLPIF 368


>gi|28572729|ref|NP_789509.1| hypothetical protein TW581 [Tropheryma whipplei TW08/27]
 gi|28410862|emb|CAD67247.1| putative membrane protein [Tropheryma whipplei TW08/27]
          Length = 298

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 59/146 (40%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  +KKR  K L++ P+A + +  SV AG  V DA+  I   S      E ++V+    
Sbjct: 146 LRRYVKKRKQKILNEMPSAFEFLSLSVSAGEGVLDAIKRICFISKGEFSIELKKVLIGVS 205

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +L   + RM   + +  +    + I    + G  L++ L   ++  R+   +    Q
Sbjct: 206 SGDTLERCLKRMAAKLDIVSIDRAVSQIITAIERGTPLADILIKQAKEARNATRVALIEQ 265

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146
           A   E      ++  +         F
Sbjct: 266 AGKKEIAMMFPLVFFILPVTILFAIF 291


>gi|163749926|ref|ZP_02157171.1| general secretion pathway protein F [Shewanella benthica KT99]
 gi|161330440|gb|EDQ01419.1| general secretion pathway protein F [Shewanella benthica KT99]
          Length = 407

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 57/183 (31%), Gaps = 18/183 (9%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            +       I   V AGLPV + +  +  Q   D + S    V      G SL++S++  
Sbjct: 67  AELALITRQIATLVAAGLPVEEVLQAVGQQCEKDRLASMIMAVRSRVVEGYSLADSMAEF 126

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G+L   L  L+     R+ +K+K+    +       +
Sbjct: 127 P-----HIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKMTQAMIYPLVLTVV 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA------------AAFMLIGIMVMR 180
              +   +   V     G    +         L +A               M+ G ++ +
Sbjct: 182 AIGVIAILLAAVVPQVVGQFEHMGQQLPWTTQLLIASSDFVRDYGLLVLGVMVGGFVLFK 241

Query: 181 LMI 183
            ++
Sbjct: 242 RLL 244


>gi|126696027|ref|YP_001090913.1| Type II secretory pathway component PulF-like protein
           [Prochlorococcus marinus str. MIT 9301]
 gi|126543070|gb|ABO17312.1| Type II secretory pathway component PulF-like protein
           [Prochlorococcus marinus str. MIT 9301]
          Length = 453

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 56/161 (34%), Gaps = 6/161 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
            D   A   +   +R GLP+ +++ +I   S +  +R  F+ +      G ++SE + + 
Sbjct: 112 KDLAVATKQLSSMIRTGLPLLESLNIIADTSENISIRYSFKEIASGISKGSTMSEMLDKY 171

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    +     +    +  G L   L   +++L     +K ++++      A A +
Sbjct: 172 PE-----VFNEMYRALVSAGETAGLLPNTLDRQAKLLESLAKIKGQIKSALAYPSAIAIL 226

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
              + F +   V        +       G     +  +  L
Sbjct: 227 TVVIVFIMMLFVIPIFVDIYDQSGAPLPGITQFLINLSDQL 267


>gi|300697738|ref|YP_003748399.1| type II secretion system protein [Ralstonia solanacearum CFBP2957]
 gi|299074462|emb|CBJ54012.1| Type II secretion system protein [Ralstonia solanacearum CFBP2957]
          Length = 326

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 63/146 (43%), Gaps = 5/146 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLSES 68
             D+ P  +D++      GL +  ++ VI  +       +  EF R  +    G    ++
Sbjct: 170 VDDELPVMVDMLRLLQGVGLSIDQSLQVIANEFYGMLPVLAGEFGRANQQFASGRPREQT 229

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           + R+ +    +++    T+++   + GG + E L      L++ +  + K +   +  K 
Sbjct: 230 LLRIAKMFDSEDLKGLITLLTQVDRFGGAVQEPLRQFGVRLQENRRSRLKERVGKLTVKM 289

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +  ++ +L   +  L+    PG+++V
Sbjct: 290 TVVMVLTLLPAL--LIITAGPGFVSV 313


>gi|171321820|ref|ZP_02910723.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
 gi|171092891|gb|EDT38141.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
          Length = 330

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 60/158 (37%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57
           +K     R    +D+ P  +D++      GL +  ++ V+       +    SE      
Sbjct: 168 VKRRAAARRQSVVDELPLFVDMLRLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEVGIAQR 227

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+ R+      +++     ++    + GG + E L      LR+ +    
Sbjct: 228 HFVAGRTREQSMQRLSGGFDNEDLRAIVRLMVQVDKHGGAVQEPLKQFGDRLRETRRAML 287

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +   +  K +  ++ +L   +  L+    PG + V+
Sbjct: 288 RERIGRLTVKMTGVMVLTLLPAL--LIVTAGPGMLAVM 323


>gi|269955644|ref|YP_003325433.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304325|gb|ACZ29875.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
           15894]
          Length = 289

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 70/181 (38%), Gaps = 4/181 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            K R A+           +   + AG+ +  A+   +  +   +  + R +    +   S
Sbjct: 96  AKARIARLE-ALEEWTRSLSGVLVAGVGLEQALVSTLRSAPTVLEPQLRLLTARLNARWS 154

Query: 65  LSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              ++      +        +  + +   + G  L+  LA+L+  +      + +++A  
Sbjct: 155 TEAALRAFADDLDDATGDLVAANLILAARRRGAGLATVLASLADSVAADVRSRRQIEADR 214

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            + +A+A  +  +   V  ++ F+   Y+    + P G ++L +  A  +  ++ ++ + 
Sbjct: 215 AKPRATARWVTIISAGVLLVLTFSG-QYVQP-FSTPLGQVVLALLLAAYVATLVWLKRLS 272

Query: 184 N 184
           N
Sbjct: 273 N 273


>gi|77747609|ref|NP_299815.2| fimbrial assembly protein [Xylella fastidiosa 9a5c]
          Length = 400

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 52/166 (31%), Gaps = 6/166 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   ++AG+P+  A+ ++   Q +  +R+   ++      G SL ESIS+ 
Sbjct: 60  KDIAFFSRQMATMMKAGVPIVGALDILANGQKNPRMRTMVNQIKNDIEGGSSLYESISKH 119

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L  ++    + + +K K++       A   +
Sbjct: 120 P-----VYFDELYRNLVRAGERAGVLETVLDTIASYKENIEALKGKIRKALFYPVAIVAV 174

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
              +   +   V             +      + V  +  +     
Sbjct: 175 ALIVSSILLIYVVPQFEDVFKGFGAELPAFTQMIVNFSNFMQRWWW 220



 Score = 37.0 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 44/136 (32%), Gaps = 5/136 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                        + RAG+P+ +A+ ++ G + +     +   +      +S+  SI+  
Sbjct: 263 NSALARFSRTTAVTFRAGVPLVEALGIVAGATGN---KVYSDAVFRMRDDVSVGYSINMS 319

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           +R + +         ++   +  G L   L  ++       +      +  +E     +I
Sbjct: 320 MRQVGI--FPHMVVQMASIGEEAGALDAMLFKVAEYYEQEVSNAVDGLSSLLEPLIMVFI 377

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V  +     
Sbjct: 378 GVIVGGMVIAMYLPIF 393


>gi|260770772|ref|ZP_05879701.1| general secretion pathway protein F [Vibrio furnissii CIP 102972]
 gi|260614009|gb|EEX39199.1| general secretion pathway protein F [Vibrio furnissii CIP 102972]
 gi|315178813|gb|ADT85727.1| general secretion pathway protein F [Vibrio furnissii NCTC 11218]
          Length = 407

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/183 (12%), Positives = 52/183 (28%), Gaps = 20/183 (10%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           D       +   V++G+P+ + +  +  QS  P        + ++               
Sbjct: 68  DLALLTRQLSTLVQSGMPLEECLRAVSEQSEKPRIRNMLAAVRSKVT----EGYTLSDSM 123

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
               Q        +    +  G+L   L  L+    +R+ M++K+    +          
Sbjct: 124 ADYPQVFDELFRSMVAAGEKSGHLDAVLERLADYAENRQKMRSKLLQAMLYPIVLVVFAV 183

Query: 135 SLPFCVSTLVYFTS-----------PGYMNVLINDP-----RGHMLLGVAAAFMLIGIMV 178
           ++   +   V               P     L++        G  LL      + +   +
Sbjct: 184 AIVAFLLAAVVPKIVGQFVQMGQELPKSTQFLLSSSDFIQHWGIQLLLALLVIIYVCRWL 243

Query: 179 MRL 181
           +R 
Sbjct: 244 LRK 246


>gi|186473167|ref|YP_001860509.1| type II secretion system protein [Burkholderia phymatum STM815]
 gi|184195499|gb|ACC73463.1| type II secretion system protein [Burkholderia phymatum STM815]
          Length = 292

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 1/147 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           M+ + ++  A  L   P  LD +  +V AGL V+ A+   V +    P+R EF  V+   
Sbjct: 134 MRDVRRRYVATVLRQLPIYLDFLTLAVEAGLNVNGAIQKAVEKGPDGPLRREFEHVLRDL 193

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             GL   +++ R      + EVS     I+   ++G  L++ L   S   R  +  +A+ 
Sbjct: 194 KSGLKRGDALRRFDERQQIGEVSNLVRTIAQAERMGSGLAKTLRFQSEQRRAERFQRAEK 253

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146
           QA+    K    ++  +      ++ F
Sbjct: 254 QAMEAPVKLLFPLLVFIFPVTFIVLGF 280


>gi|115376269|ref|ZP_01463509.1| type IV pilin [Stigmatella aurantiaca DW4/3-1]
 gi|115366694|gb|EAU65689.1| type IV pilin [Stigmatella aurantiaca DW4/3-1]
          Length = 380

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/150 (11%), Positives = 44/150 (29%), Gaps = 6/150 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                   + AGLP+   + ++  Q  +P  +     +      G + ++++    +   
Sbjct: 46  FTRQFATMIDAGLPLVQCLDILGSQMENPAFKKVVFAIKGKVEQGSTFADALKDHPK--- 102

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    ++GG L   L  L+      + +K KV++          +   + 
Sbjct: 103 --VFDELFVQLCAAGEVGGILDTILNRLAAYREKAEKLKGKVKSAMTYPSVVICVAIGVT 160

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
             +   V            ++        V
Sbjct: 161 ALLLLKVTPVFEKMFKDFGSELPAPTQFVV 190



 Score = 37.0 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/130 (9%), Positives = 37/130 (28%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+P+ DA+ V    + +    E    +        ++E  +     +  
Sbjct: 249 FTRTLGTMISSGVPILDALDVTAKTAGNRTIEEAIYYVR-----GKIAEGKNIAGPLLET 303

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G +   L  ++    D  +         +E     ++ G +  
Sbjct: 304 GVFPSMVVQMIGVGEATGAMDAMLNKIADFYDDEVDAAVAGLTAMIEPLLMVFLGGVVGG 363

Query: 139 CVSTLVYFTS 148
            +  +     
Sbjct: 364 FLIAMYLPIF 373


>gi|78064719|ref|YP_367488.1| general secretion pathway protein F [Burkholderia sp. 383]
 gi|77965464|gb|ABB06844.1| General secretion pathway protein F [Burkholderia sp. 383]
          Length = 405

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 57/183 (31%), Gaps = 7/183 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L   R     +        +   + AGLP+ +A+ V+  Q+  D +R     +     
Sbjct: 55  QRLAFGRKLSQREQ-AILTRQLASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++ +  R     +       +    +  G L   L+ L+  +     +K K+ 
Sbjct: 114 GGHSLANALGQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
                      I   +   + + V                   ++ +A +  +       
Sbjct: 169 LAFTYPGIVTLIAFGIVTFLLSYVVPQVVNVFASTKQQLPVLTIVMMALSDFVRHWWWAI 228

Query: 181 LMI 183
           L+ 
Sbjct: 229 LIA 231



 Score = 34.7 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       S+          I     G +LS +++ +  + P
Sbjct: 274 FASTLGILTAAGVPILRALQAAGETLSNRAMRANIDDAIVRVREGSALSRALNNVKTFPP 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G+++  L   +         +       +E      + G + 
Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAAEGEARELERRTMFLTSLLEPLLILAMGGIVL 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 VIVLAVMLPI 397


>gi|325518470|gb|EGC98169.1| pilus assembly protein [Burkholderia sp. TJI49]
          Length = 211

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 59/157 (37%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57
           ++     R     D+ P  +D++      GL +  ++ V+       +    SE      
Sbjct: 49  VQRRASSRRQSVEDELPLFVDMLRLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEVGIAQR 108

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+ R+      +++     ++    + GG + E L      LR+ +    
Sbjct: 109 QFVAGRTREQSMQRLSGGFENEDLRAIVRLMVQVDKHGGAVQEPLKQFGDRLRETRRSML 168

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           + +   +  K +  ++ +L   +  L+    PG++ V
Sbjct: 169 RERIGRLTVKMTGVMVLTLLPAL--LIVTAGPGFLAV 203


>gi|268608767|ref|ZP_06142494.1| type II secretion system protein [Ruminococcus flavefaciens FD-1]
          Length = 399

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 53/170 (31%), Gaps = 12/170 (7%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISR 71
             +       +   + +GL +  A+ ++  +  +      ++ V E    G S S ++  
Sbjct: 58  TKELAFCCRQLSAMLTSGLTLVKAIDILTKEQENEKARAIWQDVYENVQKGESFSSTLE- 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
               M       F   +    +  G+L   +  +S        +K  ++   +       
Sbjct: 117 ----MHSGSFPDFLISMVGAGETSGSLDIIMQRMSDHYAKENKLKNTIKGAMVYPI---I 169

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++G     V  L     P ++  + +DP     L        I   ++  
Sbjct: 170 LLGLCIVIVLFLFIKIMPTFLG-MYDDPSTMPFLT--KVMQAISDFLIHR 216


>gi|218708372|ref|YP_002415993.1| MSHA biogenesis protein MshG [Vibrio splendidus LGP32]
 gi|218321391|emb|CAV17341.1| MSHA biogenesis protein MshG [Vibrio splendidus LGP32]
          Length = 407

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/165 (9%), Positives = 45/165 (27%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
           +        +    +AG+P+  ++  +     +  ++     V+     G  L+      
Sbjct: 67  EVLVLFCRQLYSLTKAGVPLLRSMKGLTQHCENKQLKVALEEVVAELTNGRGLA-----A 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              M  +  S     +    +  G L +AL  L+         + +++            
Sbjct: 122 SMQMHPKVFSPLFVSMISVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITF 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           I    F ++  V             +      + +  +   +   
Sbjct: 182 ITIAMFVLNIFVIPQFSSMFARFGVNLPLPTRILMGMSEFFVNYW 226



 Score = 39.3 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 10/132 (7%), Positives = 38/132 (28%), Gaps = 5/132 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                      ++AG+P++ ++++      +         +  Q +  ++    +     
Sbjct: 272 LSRFSRTFALMLKAGVPLNQSLSLSAEALDNRFLE-----LRVQGMKSAIEAGSTVSSTA 326

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
           +  +  +     +    +  G + E L  ++       +   K     +E      + G 
Sbjct: 327 INSEIFTPLVIQMISVGEETGRIDELLLEVADFYDREVDYDLKTLTARIEPILLTIVAGM 386

Query: 136 LPFCVSTLVYFT 147
           +      +    
Sbjct: 387 VLILALGIFLPM 398


>gi|83747913|ref|ZP_00944945.1| TRANSMEMBRANE TIGHT ADHERENCE TADC RELATED PROTEIN; tadC2
           [Ralstonia solanacearum UW551]
 gi|207739454|ref|YP_002257847.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609]
 gi|83725446|gb|EAP72592.1| TRANSMEMBRANE TIGHT ADHERENCE TADC RELATED PROTEIN; tadC2
           [Ralstonia solanacearum UW551]
 gi|206592830|emb|CAQ59736.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609]
          Length = 326

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 63/146 (43%), Gaps = 5/146 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLSES 68
             D+ P  +D++      GL +  ++ VI  +       +  EF R  +    G    ++
Sbjct: 170 VDDELPVMVDMLRLLQGVGLSIDQSLQVIANEFYGMLPVLAGEFGRANQQFASGRPREQT 229

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           + R+ +    +++    T+++   + GG + E L      L++ +  + K +   +  K 
Sbjct: 230 LLRIAKMFDSEDLKGLITLLTQVDRFGGAVQEPLRQFGVRLQENRRSRLKERVGKLTVKM 289

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +  ++ +L   +  L+    PG+++V
Sbjct: 290 TVVMVLTLLPAL--LIITAGPGFVSV 313


>gi|323493498|ref|ZP_08098620.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546]
 gi|323312321|gb|EGA65463.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546]
          Length = 284

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 61/161 (37%), Gaps = 6/161 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   +K        + P+ALD++V  V +G  +      +  +    S  +  E+ +   
Sbjct: 123 VDWRVKAVIHDIAKNIPDALDLMVVCVSSGQSLETTFNTVGEEMKTISQSLSREWLQTAN 182

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +  S  +++  +   + L EV+     ++   + G  ++EAL  ++   R  + ++ 
Sbjct: 183 EIAVLDSPQKALFNLDERLKLPEVNNMIVTMAQALKFGTPMAEALKLIASDNRQYQMLEL 242

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158
           +     + AK S      + F +  +V       +  L   
Sbjct: 243 EEWVGKIPAKMS---FPLVVFIMMPVVVIIVAPMVLSLFQT 280


>gi|301026087|ref|ZP_07189562.1| type II secretion system F domain protein [Escherichia coli MS
           69-1]
 gi|300395658|gb|EFJ79196.1| type II secretion system F domain protein [Escherichia coli MS
           69-1]
          Length = 400

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/182 (11%), Positives = 55/182 (30%), Gaps = 22/182 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLADKVKSALRYPIIILAMAII 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +   G +L+       +   +++
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPVLTQGIMTLADFSGEWGWLLVLFGFLLAIANKLLI 235

Query: 180 RL 181
           R 
Sbjct: 236 RR 237


>gi|28493158|ref|NP_787319.1| hypothetical protein TWT191 [Tropheryma whipplei str. Twist]
 gi|28476198|gb|AAO44288.1| unknown [Tropheryma whipplei str. Twist]
          Length = 298

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 59/146 (40%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  +KKR  K L++ P+A + +  SV AG  V DA+  I   S      E ++V+    
Sbjct: 146 LRRYVKKRKQKILNEMPSAFEFLSLSVSAGEGVLDAIKRICFISKGEFSIELKKVLIGVS 205

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +L   + RM   + +  +    + I    + G  L++ L   ++  R+   +    Q
Sbjct: 206 SGDTLERCLKRMAAKLNIVSIDRAVSQIITAIERGTPLADILIKQAKEARNATRVALIEQ 265

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146
           A   E      ++  +         F
Sbjct: 266 AGKKEIAMMFPLVFFILPVTILFAIF 291


>gi|127514545|ref|YP_001095742.1| general secretion pathway protein F [Shewanella loihica PV-4]
 gi|126639840|gb|ABO25483.1| general secretion pathway protein F [Shewanella loihica PV-4]
          Length = 406

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 62/177 (35%), Gaps = 8/177 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            +       I   V AGLPV +A+  +  Q   D + S    V      G SL++S++  
Sbjct: 66  AELALITRQIATLVAAGLPVEEALKAVGQQCEKDRLASMVMAVRSRVVEGYSLADSMAEF 125

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G+L   L  L+     R+ +K K+    +       +
Sbjct: 126 P-----HIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKTKMTQAMIYPIVLTLV 180

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML--IGIMVMRLMINFDV 187
             S+   +   V     G    +  +        +A++  +   G++V+ ++I   V
Sbjct: 181 AISVIAILLAAVVPQVVGQFEHMGQELPWTTQFLIASSDFVRDYGLIVIGVIIALVV 237


>gi|289650993|ref|ZP_06482336.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 177

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 37/113 (32%), Gaps = 6/113 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMV 73
           D       +   ++AG+P+  +  +I   + +P        + +    G S + ++ R  
Sbjct: 67  DIAFFSRQMATMMKAGVPLLQSFDIISEGAENPNMRSLVESLKQEVSAGNSFATALRRKP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
                         +    +  G L   L  ++      + +KAK++      
Sbjct: 127 E-----YFDELFCNLVDAGEQAGALESLLDRVASYKEKTEKLKAKIKKAMTYP 174


>gi|318604217|emb|CBY25715.1| type II/IV secretion system protein TadC,associated with Flp pilus
           assembly [Yersinia enterocolitica subsp. palearctica
           Y11]
          Length = 274

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 59/147 (40%), Gaps = 2/147 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +K+++ KRT   L   P  +DI    V++G+ + ++++    +           +++   
Sbjct: 117 VKNIVAKRTKSLLRSLPFFIDITAACVQSGMTIDNSLSYSAKKFELINADLSLIMLKVTR 176

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +     L  +I    +     E+  F + +      G  + E L  LS+ +R+ + +  +
Sbjct: 177 RAEINGLENAIKEFNQSSTELEIRMFCSALQYSISFGATVYEQLIKLSKDMREMQLLVTE 236

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVY 145
            +   + AK +  +   +      LV 
Sbjct: 237 EKISKLTAKLTIPLFLFILIPFIVLVI 263


>gi|262044791|ref|ZP_06017836.1| general secretion pathway protein F [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037874|gb|EEW39100.1| general secretion pathway protein F [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 230

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/143 (11%), Positives = 40/143 (27%), Gaps = 7/143 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           D       +   V AG+P+  A+  +  Q          R +        L         
Sbjct: 65  DLALLTRQLATLVAAGIPLEKALDAVAQQCE----KPSLRTLMAGVRSKVLEGHSLAEAM 120

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                        +    +  G+L   L  L+     R+ ++A++    +       +  
Sbjct: 121 RGYPACFDGLFCAMVAAGETSGHLDGVLNRLADYTEQRQQLRARLLQAMIYPI---VLTL 177

Query: 135 SLPFCVSTLVYFTSPGYMNVLIN 157
                ++ L+    P  +   ++
Sbjct: 178 VAISVIAILLSTVVPKVVEQFVH 200


>gi|229521805|ref|ZP_04411223.1| general secretion pathway protein F [Vibrio cholerae TM 11079-80]
 gi|229341399|gb|EEO06403.1| general secretion pathway protein F [Vibrio cholerae TM 11079-80]
 gi|327485200|gb|AEA79607.1| General secretion pathway protein F [Vibrio cholerae LMA3894-4]
          Length = 406

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 64/183 (34%), Gaps = 20/183 (10%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V++G+P+ + +  +  QS    +R+    V      G +LS+S+    
Sbjct: 67  DLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G+L   L  L+    +R+ M++K+Q   +       ++
Sbjct: 127 -----HVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPV---VLV 178

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-----------AFMLIGIMVMRLM 182
                 V+ L+    P  +   +   +                      +L+G++++  +
Sbjct: 179 VFAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYL 238

Query: 183 INF 185
           + +
Sbjct: 239 VRW 241


>gi|330721234|gb|EGG99334.1| General secretion pathway protein F [gamma proteobacterium
           IMCC2047]
          Length = 405

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 62/198 (31%), Gaps = 23/198 (11%)

Query: 5   IKKRTAKFL---------DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRR 54
            ++R   F+          D       +   V+A LP+ +A++ +  Q+    VRS    
Sbjct: 48  KQQRQKTFVSLLSPHMSVRDLALLTRQLATLVQASLPLEEALSAVAQQTTKPKVRSMVLA 107

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           V      G +L+ ++    R  P               +  G L + L  L+        
Sbjct: 108 VRSKVLEGHTLANALGEFPRAFP-----EIYRATVAAGEKSGFLDQILNRLADYTESSHE 162

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML- 173
            + K+    +       +   +   +   +    P  + V I+  +    L V       
Sbjct: 163 SRQKIMMALLYPVILLLLSIIIVVGLMVYIV---PDVVEVFIDTGQQLPALTVGLMAFSD 219

Query: 174 ----IGIMVMRLMINFDV 187
                GI ++  +I   V
Sbjct: 220 FIAGFGIYLLLALIGLAV 237


>gi|292489326|ref|YP_003532213.1| type IV pilus assembly protein tapC [Erwinia amylovora CFBP1430]
 gi|292898450|ref|YP_003537819.1| protein transport protein [Erwinia amylovora ATCC 49946]
 gi|291198298|emb|CBJ45404.1| protein transport protein [Erwinia amylovora ATCC 49946]
 gi|291554760|emb|CBA22553.1| Type IV pilus assembly protein tapC [Erwinia amylovora CFBP1430]
 gi|312173491|emb|CBX81745.1| Type IV pilus assembly protein tapC [Erwinia amylovora ATCC
           BAA-2158]
          Length = 399

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/144 (11%), Positives = 41/144 (28%), Gaps = 6/144 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMVRYMP 77
            L  +   ++AG+P+   + ++     +         + +    G   S+++       P
Sbjct: 64  FLRQLATLLKAGMPLPACLQLLADGHPEAGWQALLIHLHQRISAGEPFSQALREWPDVFP 123

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +L G L E    L+     ++ ++ KVQ           +   + 
Sbjct: 124 PLIP-----ALVHIGELTGELDECCLQLAIQQDKQQLLRQKVQKALRYPLVIMAVALLVS 178

Query: 138 FCVSTLVYFTSPGYMNVLINDPRG 161
             +   V                G
Sbjct: 179 IGMLVFVLPEFVAIYRSFNAPLPG 202


>gi|254784516|ref|YP_003071944.1| general secretion pathway protein F [Teredinibacter turnerae T7901]
 gi|237685057|gb|ACR12321.1| general secretion pathway protein F [Teredinibacter turnerae T7901]
          Length = 410

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 59/173 (34%), Gaps = 8/173 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72
            D       +   V++GLP+ + +A    QS  P       +V      GLSL+++++ +
Sbjct: 71  RDVSLVTRQLASLVQSGLPLDEVLASTAKQSRKPAAKTIMLQVRSRVLEGLSLAQAMAEI 130

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R             +    +  G L   L  L+      +  K K++   +       +
Sbjct: 131 PR-----VFDGLYRAMVRAGESSGYLGPVLERLADYTERSQETKQKLKGAMVYPIIMMLV 185

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI--GIMVMRLMI 183
             S+   +   V     G       +        + A+  L+  G+ ++  ++
Sbjct: 186 SISVVTLMMVKVVPNLVGMFERNKQELPFVTKFLIGASNFLVNYGVFLLLGIV 238



 Score = 35.1 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 46/127 (36%), Gaps = 7/127 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +     +G+P+ +A+ +     ++  +R+  + V      G SL +++  +      +  
Sbjct: 283 LGLLANSGVPLLEALRIAAQVLTNHELRAAAKEVAVLVQEGSSLHKALDSV------EVF 336

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 ++   +  G L+E L + +R                ME     ++ G + F V 
Sbjct: 337 PPLLVQMAASGEANGKLAEQLLHAARNQERELEFTVNTALGLMEPFMVLFMGGVVTFIVI 396

Query: 142 TLVYFTS 148
            ++    
Sbjct: 397 AILLPIF 403


>gi|229513659|ref|ZP_04403123.1| general secretion pathway protein F [Vibrio cholerae TMA 21]
 gi|229349536|gb|EEO14492.1| general secretion pathway protein F [Vibrio cholerae TMA 21]
          Length = 406

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 64/183 (34%), Gaps = 20/183 (10%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V++G+P+ + +  +  QS    +R+    V      G +LS+S+    
Sbjct: 67  DLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G+L   L  L+    +R+ M++K+Q   +       ++
Sbjct: 127 -----HVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPV---VLV 178

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-----------AFMLIGIMVMRLM 182
                 V+ L+    P  +   +   +                      +L+G++++  +
Sbjct: 179 VFAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYL 238

Query: 183 INF 185
           + +
Sbjct: 239 VRW 241


>gi|127514367|ref|YP_001095564.1| type II secretion system protein [Shewanella loihica PV-4]
 gi|126639662|gb|ABO25305.1| type II secretion system protein [Shewanella loihica PV-4]
          Length = 422

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 55/173 (31%), Gaps = 14/173 (8%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMV 73
           D       I   + AG+P+   + ++      P   E    ++     G+ LS+S+    
Sbjct: 82  DIAMITRQIATMLAAGVPIVTTLEMLGRGHEKPRMRELLGTIVADVQSGIPLSDSLK--- 138

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                Q        +    +  G+L      ++      + +K+K++       A   + 
Sbjct: 139 --PHRQYFDDLYVDLVGAGEHSGSLDAVFDRIATYREKAEALKSKIKKAMFYPAAVIVVA 196

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA--------FMLIGIMV 178
            ++   +   V             +      + V+ +        F +IGI+V
Sbjct: 197 IAVTTLLLLFVVPQFEDIFAGFGAELPAFTQMIVSISRWLQSSWYFFVIGIVV 249


>gi|171741513|ref|ZP_02917320.1| hypothetical protein BIFDEN_00598 [Bifidobacterium dentium ATCC
           27678]
 gi|283455153|ref|YP_003359717.1| hypothetical protein BDP_0212 [Bifidobacterium dentium Bd1]
 gi|171277127|gb|EDT44788.1| hypothetical protein BIFDEN_00598 [Bifidobacterium dentium ATCC
           27678]
 gi|283101787|gb|ADB08893.1| hypothetical membrane-spanning protein, pilus assembly protein
           [Bifidobacterium dentium Bd1]
          Length = 270

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 60/165 (36%), Gaps = 5/165 (3%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           +  +  SVR+G  +  A   + G +         R+           E   +M R     
Sbjct: 107 VAALQASVRSGATLVQAFEELGGYAFATPELTRSRIEMVLRCRCPPEEQGGQMRRL---- 162

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
             +       +   LG   S  LA +   L+ ++ ++   +      +A+  ++ +LP  
Sbjct: 163 -SAELYAACQLSMALGCETSRCLAAVLASLKRQRLLEDLHRNAFAMPQATVKLLMALPLL 221

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
              L        +  L  D RG + LG A     IG++ +R+++ 
Sbjct: 222 TVLLGEGMGARPLAFLCGDARGLLCLGFALGCYAIGLLWIRVLLR 266


>gi|218133637|ref|ZP_03462441.1| hypothetical protein BACPEC_01506 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991012|gb|EEC57018.1| hypothetical protein BACPEC_01506 [Bacteroides pectinophilus ATCC
           43243]
          Length = 403

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/171 (10%), Positives = 58/171 (33%), Gaps = 6/171 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
            D           ++AG+ V +A++++  Q+ +  +++  + V      G +LS ++   
Sbjct: 64  RDLSVFCRQFSSIIKAGVNVINALSMMSEQTENKKLKAAIKNVQSNVEKGETLSSAMRSE 123

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P          +    +  G+L  A+  ++        +   V+   +       +
Sbjct: 124 GDIFP-----SLLVSMVAAGEASGSLETAIERMAIQFEKDAKISGMVKKAMIYPIILIVV 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           +  +   +   V          L  +     ++ +  +  ++    + ++I
Sbjct: 179 MIGVVIAMMMFVIPNFMDMFEGLDAEMPFMTVMVINMSNFILDRWWLLILI 229



 Score = 41.3 bits (95), Expect = 0.059,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 43/129 (33%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
              I+   + AG+P+  A+ +  G   + +       ++    G++L    S+  +    
Sbjct: 272 FSRIMSTLLSAGMPMISAIEIAAGTMDNVLFK---DALQKVRSGVALGMGFSQ--QIGVT 326

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +        +    +  GN+ + L N++    +   +  +     ME      +   +  
Sbjct: 327 RLFPAMLVHMVGIGEETGNIEDMLTNVANYYDEEVELATQSVTALMEPMIIIVMAVVVGA 386

Query: 139 CVSTLVYFT 147
            V  +    
Sbjct: 387 LVLAIYQPM 395


>gi|260222245|emb|CBA31615.1| General secretion pathway protein F [Curvibacter putative symbiont
           of Hydra magnipapillata]
          Length = 422

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 63/171 (36%), Gaps = 14/171 (8%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   V AGLP+  A++ +  ++     R     +    + G  L  ++++  +   
Sbjct: 88  WTRQLAGLVSAGLPLERALSSLAEEAETPAQRDVVATIRSEVNGGKPLGTALAQHPK--- 144

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
             E S     +    +  G L   L  L+  L +++N+ +K+   ++       +     
Sbjct: 145 --EFSDIYVAVVSAGEQSGQLGLVLERLADDLEEQQNLSSKLMGAALYPA---IVSVVAL 199

Query: 138 FCVSTLVYFTSPGYMNVLIND-----PRGHMLLGVAAAFMLIGIMVMRLMI 183
             V  L+ +  P   NV             ++L ++ A    G++ +  +I
Sbjct: 200 VIVLFLLAYVVPQIANVFAGSKQALPWLTRVMLAISDAVRSYGLLALIAII 250



 Score = 39.3 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 36/129 (27%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+  A+       S+         +E   L    +   S + R    
Sbjct: 291 FASTLAMLAAAGVPILKALQAAAETLSNRAMR--DDALEALTLVREGAPLASALARNQRF 348

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
             +      +    +  G L   L   +  LR     +A   A  +E      +   +  
Sbjct: 349 PALLSMFARL---GEQTGRLPHMLDRAALQLRTEVQRRALQLATLLEPLLIVAMGLVVML 405

Query: 139 CVSTLVYFT 147
            V  ++   
Sbjct: 406 IVLAVLMPI 414


>gi|238789152|ref|ZP_04632940.1| Type II secretion system protein [Yersinia frederiksenii ATCC
           33641]
 gi|238722684|gb|EEQ14336.1| Type II secretion system protein [Yersinia frederiksenii ATCC
           33641]
          Length = 264

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 63/157 (40%), Gaps = 4/157 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +  +I +RT   L   P  +DI    V++G+ + ++++    +           +I    
Sbjct: 104 INKVIIRRTESVLKSLPFFIDITAACVQSGMTIDNSLSYAAKKFELINHDLSLIMIRMIK 163

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +     L  +I  +       E+  F + +      G ++ + L NLS+ +R+ + +  +
Sbjct: 164 RAEINGLESAIKELHHSSNALEIKMFCSALQYSISFGSSVYDQLINLSQDMREMQLLVTE 223

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            +   + AK +  +   +      LV   SP  + +L
Sbjct: 224 ERISKLSAKLTFPLFLFILIPFVVLV--ISPSVLEIL 258


>gi|254522252|ref|ZP_05134307.1| general secretion pathway protein F [Stenotrophomonas sp. SKA14]
 gi|219719843|gb|EED38368.1| general secretion pathway protein F [Stenotrophomonas sp. SKA14]
          Length = 338

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 41/142 (28%), Gaps = 4/142 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                    +   + AG P+  A+++++         E  R   T    +    +     
Sbjct: 67  AALLQFTQQLATLLGAGQPLDRALSILL----GLPEDERSRRAITDIRDVVRGGAPLSTA 122

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +    + GG+L E L  L+  L   + ++ KV    +       ++
Sbjct: 123 LERQHGLFSRLYVNMVRAGEAGGSLHETLQRLADYLERSRALQGKVINALVYPAILLVVV 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155
           G     +   V          L
Sbjct: 183 GGALLFLLGYVVPQFAQMYESL 204


>gi|313497414|gb|ADR58780.1| XcpS [Pseudomonas putida BIRD-1]
          Length = 400

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 54/171 (31%), Gaps = 7/171 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R              +     AG+P+ DA+A +  Q   P       V     L   L 
Sbjct: 53  RRQRLSRAQLCELTRQLATLTGAGIPLVDALATLERQLRQPALH-SVLVALRGSLAEGLG 111

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            + S   +  P          +    +  G+L++ L  L+  L   +  + K +   +  
Sbjct: 112 LARSLARQGAPFTG---LYCALVEAGERSGHLAQVLTRLADHLEQVQRQQHKARTALIYP 168

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
                ++G     V  L+ F  P       +  +   L+      +  G++
Sbjct: 169 A---VLMGVSLAVVIGLMTFVVPKLTEQFAHAGQSLPLITSLLIGLSQGLV 216



 Score = 38.6 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 11/127 (8%), Positives = 32/127 (25%), Gaps = 5/127 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +     +G+ + +A+ V      +         +     G +         +  P   
Sbjct: 270 RSLAILTGSGVALLEALQVATETIGNRRIRLAMEQVRQHVQGGTSLHRALDASQQFPP-- 327

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
                  +    +  G L++ L  ++         +        E      +   + F V
Sbjct: 328 ---LLVNMVGSGEASGTLADMLERVADDQERGFARQVDTAMALFEPLMILVMGAVVLFIV 384

Query: 141 STLVYFT 147
             ++   
Sbjct: 385 LAVLLPI 391


>gi|24111551|ref|NP_706061.1| type IV pilin biogenesis protein [Shigella flexneri 2a str. 301]
 gi|30061673|ref|NP_835844.1| type IV pilin biogenesis protein [Shigella flexneri 2a str. 2457T]
 gi|24050311|gb|AAN41768.1| putative integral membrane protein [Shigella flexneri 2a str. 301]
 gi|30039915|gb|AAP15649.1| putative integral membrane protein [Shigella flexneri 2a str.
           2457T]
 gi|281599468|gb|ADA72452.1| putative integral membrane protein [Shigella flexneri 2002017]
 gi|313646513|gb|EFS10974.1| bacterial type II secretion system F domain protein [Shigella
           flexneri 2a str. 2457T]
 gi|332762106|gb|EGJ92375.1| bacterial type II secretion system protein F domain protein
           [Shigella flexneri 4343-70]
 gi|332762314|gb|EGJ92581.1| bacterial type II secretion system protein F domain protein
           [Shigella flexneri 2747-71]
 gi|332764951|gb|EGJ95179.1| bacterial type II secretion system protein F domain protein
           [Shigella flexneri K-671]
 gi|332768894|gb|EGJ99073.1| bacterial type II secretion system F domain protein [Shigella
           flexneri 2930-71]
 gi|333009150|gb|EGK28606.1| bacterial type II secretion system protein F domain protein
           [Shigella flexneri K-218]
 gi|333010600|gb|EGK30033.1| bacterial type II secretion system protein F domain protein
           [Shigella flexneri VA-6]
 gi|333022364|gb|EGK41602.1| bacterial type II secretion system protein F domain protein
           [Shigella flexneri K-304]
          Length = 400

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 55/182 (30%), Gaps = 22/182 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEA 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKSQRQLTDKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +   G +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGFLLAIANKLLM 235

Query: 180 RL 181
           R 
Sbjct: 236 RR 237


>gi|148546332|ref|YP_001266434.1| general secretion pathway protein F [Pseudomonas putida F1]
 gi|148510390|gb|ABQ77250.1| general secretion pathway protein F [Pseudomonas putida F1]
          Length = 400

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 54/171 (31%), Gaps = 7/171 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R              +     AG+P+ DA+A +  Q   P       V     L   L 
Sbjct: 53  RRQRLSRAQLCELTRQLATLTGAGIPLVDALATLERQLRQPALH-SVLVALRGSLAEGLG 111

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            + S   +  P          +    +  G+L++ L  L+  L   +  + K +   +  
Sbjct: 112 LARSLARQGAPFTG---LYCALVEAGERSGHLAQVLTRLADHLEQVQRQQHKARTALIYP 168

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
                ++G     V  L+ F  P       +  +   L+      +  G++
Sbjct: 169 A---VLMGVSLAVVIGLMTFVVPKLTEQFAHAGQSLPLITSLLIGLSQGLV 216



 Score = 38.6 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 11/127 (8%), Positives = 32/127 (25%), Gaps = 5/127 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +     +G+ + +A+ V      +         +     G +         +  P   
Sbjct: 270 RSLAILTGSGVALLEALQVATETIGNRRIRLAMEQVRQHVQGGTSLHRALDASQQFPP-- 327

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
                  +    +  G L++ L  ++         +        E      +   + F V
Sbjct: 328 ---LLVNMVGSGEASGTLADMLERVADDQERGFARQVDTAMALFEPLMILVMGAVVLFIV 384

Query: 141 STLVYFT 147
             ++   
Sbjct: 385 LAVLLPI 391


>gi|229918377|ref|YP_002887023.1| type II secretion system protein [Exiguobacterium sp. AT1b]
 gi|229469806|gb|ACQ71578.1| type II secretion system protein [Exiguobacterium sp. AT1b]
          Length = 405

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 67/167 (40%), Gaps = 6/167 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
           +     +      +RAG+P+  A +++ V   S+ ++    +V +    G++ SE+I + 
Sbjct: 64  EHLIMYVRQFATLIRAGVPIVRATSILRVQTESNVLKKALSQVEDDLKEGIAYSEAIKKH 123

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R       S F + +++  +  GNL EAL  +   L+ + ++K KV +        + +
Sbjct: 124 PR-----VFSNFFSSMALAGETSGNLEEALDQIGLQLQKQYDVKRKVISALTYPLVVSIV 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
              +   +   V  T       L  +      + VA +  +     +
Sbjct: 179 AIGVVAFLMVNVVPTFASIFGQLGGELPLITRIVVAVSDFIAAFWWL 225


>gi|90411988|ref|ZP_01219995.1| putative Type IV pilin biogenesis protein [Photobacterium profundum
           3TCK]
 gi|90326966|gb|EAS43345.1| putative Type IV pilin biogenesis protein [Photobacterium profundum
           3TCK]
          Length = 406

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 52/182 (28%), Gaps = 13/182 (7%)

Query: 3   HLIKKRT----AKFLDDFP-----NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR 53
             IK+R     +K  +             +   + +G+PV  ++ +I     +       
Sbjct: 46  KKIKRRKPSTFSKLRNQIKPEDITETTRQLATMIESGVPVVQSLKLIS----NSHHKAEV 101

Query: 54  RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
           R   TQ      + +               F   +    +  G+L+E  + ++      +
Sbjct: 102 RATLTQVTMQVEAGASLSKALKTSSPLFDDFYCDLVATGEQTGHLAEVFSRIATYREKGE 161

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
            M+ KV    +           +   +   V        +    D      L + A+  L
Sbjct: 162 IMRKKVIKAMIYPSMVTLTALIVTVMMLVFVIPQFASIFSSFGADLPLFTQLVINASDFL 221

Query: 174 IG 175
           I 
Sbjct: 222 IA 223


>gi|325845114|ref|ZP_08168425.1| type II secretion system protein F domain protein [Turicibacter sp.
           HGF1]
 gi|325488856|gb|EGC91254.1| type II secretion system protein F domain protein [Turicibacter sp.
           HGF1]
          Length = 400

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 54/158 (34%), Gaps = 9/158 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           D           V AG+ + + + ++  Q +   ++    +V E    G SL ES+S+  
Sbjct: 63  DIAVFCRQFYTMVDAGVQIDNCLDILSTQLTHPELKKALTQVHEDVQRGESLYESMSK-- 120

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +E       +    ++ GNL   L  +S        M AKV+   +     A + 
Sbjct: 121 ---HEEEFPELLLKMIQSGEVSGNLDTILLRMSVYYEKENKMNAKVKNAMIYPSILAIVA 177

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
                 +   + F  P ++ +          L  A  +
Sbjct: 178 AGAVTVI---LTFVMPTFIEMFNEMGVELPWLTKALLW 212



 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/136 (8%), Positives = 40/136 (29%), Gaps = 5/136 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+P++ ++ ++     + V  +    +  + +         +     P 
Sbjct: 270 FTRTLSTLLSSGMPLAQSIQIVSEVVQNTVAEQVLLTVRDELVKGEGLSGPMKDAGIFPP 329

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                  + +    +  G L E L   +    D    + +     +E      +   +  
Sbjct: 330 -----MLSSMIHIGEETGALDEILNKTADFYDDELEAQIQATTALIEPLLIVVMGIIIGA 384

Query: 139 CVSTLVYFTSPGYMNV 154
            V  ++      Y  +
Sbjct: 385 IVLAIMIPMFEMYTQM 400


>gi|223984513|ref|ZP_03634645.1| hypothetical protein HOLDEFILI_01940 [Holdemania filiformis DSM
           12042]
 gi|223963499|gb|EEF67879.1| hypothetical protein HOLDEFILI_01940 [Holdemania filiformis DSM
           12042]
          Length = 395

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/167 (9%), Positives = 61/167 (36%), Gaps = 10/167 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71
             +       +   + +G+P+ +A+ ++        ++  + +++E    G SL+     
Sbjct: 57  NQELSLMCKQLSAMLSSGIPLVNALEMLRQKSDKKKMKKLYAQLVEEVRKGSSLT----- 111

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +      Q        +    ++ G L   +  ++        ++ KV +  +       
Sbjct: 112 LAMKQCQQAFPPLLIYLVQAGEMNGTLDSVMERMAGHYDKEYKLRNKVTSALIYPIMLMV 171

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLIN-DPRGHMLLGVAAAFMLIGIM 177
           +  +    +  L+    P +++++ + +   + LL ++ +  ++   
Sbjct: 172 VTVA---VILALMTSVVPSFLSMVGDMELPWNTLLLISMSNFIVAYW 215


>gi|114568934|ref|YP_755614.1| type II secretion system protein [Maricaulis maris MCS10]
 gi|114339396|gb|ABI64676.1| type II secretion system protein [Maricaulis maris MCS10]
          Length = 411

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/179 (12%), Positives = 57/179 (31%), Gaps = 7/179 (3%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSL 65
           +R      +       +   + AG+PV++ + ++  Q     +R     V      G  L
Sbjct: 64  RRQDLSSRERMLVTRQLASLLGAGMPVAECLGLLADQGGRHHMRRVLMAVRARVSEGERL 123

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S+++    +  P          +    ++ G L   L+ L+  L   + +  ++    + 
Sbjct: 124 SDAMQAFPKSFP-----AVYRAMVSAGEVAGGLDRVLSRLADYLEKEEAVANRITGALVY 178

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI-GIMVMRLMI 183
               + +   +   + T V          +           +A +  L  G   +  ++
Sbjct: 179 PLVLSTVAAGVVTLLMTFVVPRIAEQFTGMGMTLPALTRFMIAVSGFLTEGWPWILGLV 237


>gi|121586625|ref|ZP_01676410.1| general secretion pathway protein F [Vibrio cholerae 2740-80]
 gi|153212531|ref|ZP_01948278.1| general secretion pathway protein F [Vibrio cholerae 1587]
 gi|153802195|ref|ZP_01956781.1| general secretion pathway protein F [Vibrio cholerae MZO-3]
 gi|153802931|ref|ZP_01957517.1| general secretion pathway protein F [Vibrio cholerae MZO-3]
 gi|153825519|ref|ZP_01978186.1| general secretion pathway protein F [Vibrio cholerae MZO-2]
 gi|153828358|ref|ZP_01981025.1| general secretion pathway protein F [Vibrio cholerae 623-39]
 gi|229527343|ref|ZP_04416735.1| general secretion pathway protein F [Vibrio cholerae 12129(1)]
 gi|254225448|ref|ZP_04919059.1| general secretion pathway protein F [Vibrio cholerae V51]
 gi|254285926|ref|ZP_04960888.1| general secretion pathway protein F [Vibrio cholerae AM-19226]
 gi|297581571|ref|ZP_06943494.1| general secretion pathway protein F [Vibrio cholerae RC385]
 gi|121549184|gb|EAX59217.1| general secretion pathway protein F [Vibrio cholerae 2740-80]
 gi|124116402|gb|EAY35222.1| general secretion pathway protein F [Vibrio cholerae 1587]
 gi|124121544|gb|EAY40287.1| general secretion pathway protein F [Vibrio cholerae MZO-3]
 gi|124122269|gb|EAY41012.1| general secretion pathway protein F [Vibrio cholerae MZO-3]
 gi|125622082|gb|EAZ50405.1| general secretion pathway protein F [Vibrio cholerae V51]
 gi|148876188|gb|EDL74323.1| general secretion pathway protein F [Vibrio cholerae 623-39]
 gi|149740804|gb|EDM54895.1| general secretion pathway protein F [Vibrio cholerae MZO-2]
 gi|150424108|gb|EDN16047.1| general secretion pathway protein F [Vibrio cholerae AM-19226]
 gi|229334975|gb|EEO00460.1| general secretion pathway protein F [Vibrio cholerae 12129(1)]
 gi|297534409|gb|EFH73247.1| general secretion pathway protein F [Vibrio cholerae RC385]
          Length = 406

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 64/183 (34%), Gaps = 20/183 (10%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V++G+P+ + +  +  QS    +R+    V      G +LS+S+    
Sbjct: 67  DLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G+L   L  L+    +R+ M++K+Q   +       ++
Sbjct: 127 -----HVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPV---VLV 178

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-----------AFMLIGIMVMRLM 182
                 V+ L+    P  +   +   +                      +L+G++++  +
Sbjct: 179 VFAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYL 238

Query: 183 INF 185
           + +
Sbjct: 239 VRW 241


>gi|254507436|ref|ZP_05119571.1| type II secretory pathway, component PulF [Vibrio parahaemolyticus
           16]
 gi|219549692|gb|EED26682.1| type II secretory pathway, component PulF [Vibrio parahaemolyticus
           16]
          Length = 406

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 53/175 (30%), Gaps = 8/175 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
           +        +    +AG+P+  ++  +    S+  ++     V +    G SL+      
Sbjct: 66  EALVIFCRQLYSLTKAGVPLLRSMKGLSSNCSNKQLQHALEEVTQELTNGRSLAG----- 120

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              M  +  S     +    +  G L +AL  L+         + +++            
Sbjct: 121 SMQMHSKVFSPLFVSMINVGENTGRLDQALLQLANYYEQEVETRKRIKTAMRYPTFVISF 180

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           I    F ++  V        +    D      + +  +   +   ++  MI   V
Sbjct: 181 IVIALFILNVKVIPQFSTMFSRFGVDLPLPTRILITMSDFFVNYWLV--MIAVIV 233



 Score = 42.8 bits (99), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/135 (8%), Positives = 35/135 (25%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         ++AG+P++ ++A+      +              +  S+    +  
Sbjct: 268 RAQLSRFSRTFALMLKAGVPLNQSLALAAEALGNKFLE-----NRLIEMKSSIEAGGTIS 322

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +     +     +    +  G + E L  ++       +   K     +E      +
Sbjct: 323 STAINSGIFTPLVIQMISVGEETGRIDELLLEVADFYDREVDYDLKTLTARIEPILLLVV 382

Query: 133 IGSLPFCVSTLVYFT 147
            G +      +    
Sbjct: 383 AGMVLILALGIFLPM 397


>gi|283783891|ref|YP_003363756.1| protein transport protein HofC [Citrobacter rodentium ICC168]
 gi|282947345|emb|CBG86890.1| protein transport protein HofC [Citrobacter rodentium ICC168]
          Length = 400

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 61/169 (36%), Gaps = 14/169 (8%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +SD + ++ GQ  D         +      G  LS ++++    
Sbjct: 61  AEVIQQLATLLQAGLTLSDGLWLLAGQHPDKQWQALLESLARELENGAPLSSALAQWPDI 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L    + L+R  + +K ++ KV            I+  
Sbjct: 121 FPP-----LYLAMIRTGELTGKLDVCCSELARQQKAQKQLRDKVAKALRYPT---IILTM 172

Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP---RGHMLLGVAAAFMLIGIMVM 179
               V  +++F  P +  +    N P       ++ VA      G +V+
Sbjct: 173 AVMVVLAMLHFVLPEFAAIYRTFNTPLPALTQWIIAVANGSARWGWLVI 221


>gi|126666453|ref|ZP_01737432.1| general secretion pathway protein F [Marinobacter sp. ELB17]
 gi|126629254|gb|EAZ99872.1| general secretion pathway protein F [Marinobacter sp. ELB17]
          Length = 403

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 56/161 (34%), Gaps = 9/161 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +++G+P+   ++V   QS+   +RS    +      G S ++S+   
Sbjct: 64  ADLALVTRQMATLIQSGIPIEQTLSVTSKQSNNPRIRSMLIAIRAKVMEGHSFADSLGEF 123

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R  P               +  G+L   L  L+     R+  + K+Q  ++       +
Sbjct: 124 PRAFP-----RLFCSTVAAGEHAGHLDLVLNRLADYTESRQESRQKIQLAAIYPI---IL 175

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
                  V  L+ +  P  + V +   +   LL  A   M 
Sbjct: 176 TVVAVSIVVFLLTYVVPDIIAVFVRQGQQLPLLTRAMLSMS 216



 Score = 36.6 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +     +G+P+ DA+ +      +D +R E +        G +L  ++ +   + P+   
Sbjct: 276 LSILTTSGVPLVDAMRIAGEVLGNDYLRQELKDAARKVSEGGALHRALDQSGYFPPM--- 332

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L   L   +R+  +    K        E      + G +   V 
Sbjct: 333 ---MLHMIASGEASGELDSMLERTARMQENTLQAKIAAIVGLFEPLMLLLMGGVVLIIVM 389

Query: 142 TLVYFT 147
            ++   
Sbjct: 390 AIMLPI 395


>gi|294625722|ref|ZP_06704342.1| general secretion pathway protein F [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294666165|ref|ZP_06731421.1| general secretion pathway protein F [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325928118|ref|ZP_08189329.1| Type II secretory pathway, component [Xanthomonas perforans 91-118]
 gi|292599958|gb|EFF44075.1| general secretion pathway protein F [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292604081|gb|EFF47476.1| general secretion pathway protein F [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325541507|gb|EGD13038.1| Type II secretory pathway, component [Xanthomonas perforans 91-118]
          Length = 405

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/183 (10%), Positives = 56/183 (30%), Gaps = 5/183 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ L++K+              +   + AG P+  A+++++         E  R +    
Sbjct: 54  LRMLLRKKPFD-NAALVQFTQQLATLIGAGQPLDRALSILMD----LPEDEKSRRVIGDV 108

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                  +             S     +    + GG++ + L  L+  L   + ++ KV 
Sbjct: 109 RDTVRGGAPLSSALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKVI 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
              +       ++G     +   V          L           ++   ++    ++ 
Sbjct: 169 NALIYPAILLAVVGCALLFLLGYVVPQFAQMYESLDVALPWFTQAVLSVGLLVRDWWIVL 228

Query: 181 LMI 183
           +++
Sbjct: 229 IVV 231


>gi|225351276|ref|ZP_03742299.1| hypothetical protein BIFPSEUDO_02868 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158732|gb|EEG71974.1| hypothetical protein BIFPSEUDO_02868 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 252

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 52/162 (32%), Gaps = 5/162 (3%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +  SVR+G  +  A   + G           R+           E   ++ R        
Sbjct: 88  LRASVRSGATLVQAFEELGGTPFATPELTRLRITMVIRSRCPPKEQCGQVERLSG----- 142

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
                  +   LG      L  ++  L+ ++ +           KA+  ++ +LP     
Sbjct: 143 ELYAACQLSLTLGCETGRCLQAVAESLKRQRLLDDLRTNAFAMPKATVKLLMALPLLTVL 202

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           L        +  L++  +G   LG A      G++ +R ++ 
Sbjct: 203 LGEGMGAHSLAFLVSGVKGLACLGFALCCYTFGLIWIRALMR 244


>gi|306823786|ref|ZP_07457160.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|304552784|gb|EFM40697.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
          Length = 270

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 59/165 (35%), Gaps = 5/165 (3%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           +  +  SVR+G  +  A   + G +         R+           E   +M R     
Sbjct: 107 VAALQASVRSGATLVQAFEELGGCAFATPELTRSRIEMVLRCRCPPEEQGEQMRRL---- 162

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
             +       +   LG   S  LA +   L+ ++ +    +      +A+  ++ +LP  
Sbjct: 163 -SAELYAACQLSMALGCETSRCLAAVLASLKRQRLLNDLRRNAFAMPQATVKLLMALPLL 221

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
              L        +  L  D RG + LG A     IG++ +R+++ 
Sbjct: 222 TVLLGEGMGARPLAFLCGDARGLLCLGFALGCYAIGLLWIRVLLR 266


>gi|260438825|ref|ZP_05792641.1| type 4 fimbrial assembly protein PilC [Butyrivibrio crossotus DSM
           2876]
 gi|292808815|gb|EFF68020.1| type 4 fimbrial assembly protein PilC [Butyrivibrio crossotus DSM
           2876]
          Length = 403

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/170 (10%), Positives = 48/170 (28%), Gaps = 7/170 (4%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
               + D           ++AG+ V  A+ ++  Q+ +    +    +            
Sbjct: 58  KKVKVRDLSAFCRQFNSLLKAGVGVITALDMLGDQTENRTLKQSIYNVRDGVQKGD---- 113

Query: 69  ISRMVRYMPLQEV-SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
              +   M  ++        +    +  GN+  AL  ++         KA ++   M   
Sbjct: 114 --TLANSMKKEDCFPSLLVSMMEAGEQSGNIEIALERMAEHFEKDGRAKAALKKAMMYPI 171

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
               +  ++   +   V  +       +     G     ++ +  + G  
Sbjct: 172 ILGIVAIAVLVIMVVAVIPSFSSMFADMDAKLPGITRGLLSLSDFIRGYW 221



 Score = 42.8 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 44/142 (30%), Gaps = 12/142 (8%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
                   + +G+ + +A+ +  G   + +              G+ L+  + +   + P
Sbjct: 270 FARTFSTMLSSGMSMVEALNITAGTMDNQLFKDVVSDCAVQVQRGVPLTMPLKKSELFPP 329

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     ++   +  GNL E L N +    +      +     ME      +I  + 
Sbjct: 330 ------LIIHMTGIGEESGNLEEMLNNCANYFDEEVEAATQQVMALMEP-----MIIIVL 378

Query: 138 FCVSTLVYFTSPGYMNVLINDP 159
             +  L+     G M  + N  
Sbjct: 379 AGIVCLILAAIYGPMITMYNTL 400


>gi|171914419|ref|ZP_02929889.1| type IV pilus biogenesis protein PilC [Verrucomicrobium spinosum
           DSM 4136]
          Length = 426

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 6/146 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS-LSESISRM 72
                    +   + +GLP+   + V+  Q  +P+       +       S  SES+ + 
Sbjct: 81  KTLMIFTRQLATLIDSGLPLLRGLTVLGRQEPNPIMKRTINTLADSVQTGSTFSESLQQF 140

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R       +     +    +LGG L   L  L+      + +K K+ A  +       I
Sbjct: 141 PRI-----YNKLYINMVKAGELGGVLELVLNRLAEYQEKAQKLKNKIVAAMVYPMIVMII 195

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIND 158
              +   + T++          ++  
Sbjct: 196 AVGIMIFLMTVIVPKFEKIFEDMLGS 221



 Score = 40.5 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/141 (11%), Positives = 39/141 (27%), Gaps = 9/141 (6%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R +            +   V +G+P+  A+ +    + + V S+    +          
Sbjct: 284 QRKSAISR----FTRTLGTLVTSGVPILQALNITRETAGNVVVSDAINKVHDAVKEGESM 339

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +     +  P          +    +  G L E L  ++ +  D  +         +E 
Sbjct: 340 VAPLEASKVFPP-----MVISMVDVGEETGQLPEMLLKVADVYEDEVDNSVSALTSMLEP 394

Query: 127 KASAWIIGSLPFCVSTLVYFT 147
                +   +   V  L    
Sbjct: 395 LMIVILAVVVGVIVLALFMPL 415


>gi|260774761|ref|ZP_05883664.1| general secretion pathway protein F [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609323|gb|EEX35475.1| general secretion pathway protein F [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 407

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 58/172 (33%), Gaps = 8/172 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V++G+P+ + +  +  QS    +R+    V      G +L++S++   
Sbjct: 68  DLALITRQLATLVQSGMPLEECLKAVSEQSEKPRIRTMLLAVRSKVTEGYTLADSLADFP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G+L   L  L+    +R+ M++K+Q   +         
Sbjct: 128 -----HIFDDLFRSMVSAGEKSGHLDAVLERLADYAENRQKMRSKLQQAMIYPVVLVVFA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMI 183
             +   +   V     G    +  +       LL  +      GI ++  + 
Sbjct: 183 VGIVAFLLAAVVPKIVGQFVQMGQELPQSTQFLLASSDFIQNWGIQILVALT 234


>gi|271501353|ref|YP_003334378.1| general secretion pathway protein F [Dickeya dadantii Ech586]
 gi|270344908|gb|ACZ77673.1| general secretion pathway protein F [Dickeya dadantii Ech586]
          Length = 408

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 65/184 (35%), Gaps = 15/184 (8%)

Query: 7   KRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLS 64
           +R+ +    D       +   V A LP+ +A+  +  QS    + +    V      G S
Sbjct: 60  RRSHRISASDLALLTRQLATLVAAALPLEEALDAVAKQSEKPKLSALMAAVRAKVVEGHS 119

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L+E++                  +    +  G+L   L  L+     R+ M++++Q   +
Sbjct: 120 LAEAMGNFP-----GSFERLYCAMVAAGEASGHLDAVLNRLADYTEQRQQMRSRIQQAMI 174

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND-----PRGHMLLGVAAAFMLIGIMVM 179
                  +       VS L+    P  +   I+          +L+ V+ A    G  V+
Sbjct: 175 YP---CVLTLVAISVVSILLSAVVPKVVEQFIHMKQTLPLSTRLLMSVSDAVRTYGPWVV 231

Query: 180 RLMI 183
            L+I
Sbjct: 232 LLLI 235


>gi|300905515|ref|ZP_07123278.1| type II secretion system F domain protein [Escherichia coli MS
           84-1]
 gi|301303794|ref|ZP_07209914.1| type II secretion system F domain protein [Escherichia coli MS
           124-1]
 gi|300402624|gb|EFJ86162.1| type II secretion system F domain protein [Escherichia coli MS
           84-1]
 gi|300840921|gb|EFK68681.1| type II secretion system F domain protein [Escherichia coli MS
           124-1]
 gi|315254904|gb|EFU34872.1| type II secretion system F domain protein [Escherichia coli MS
           85-1]
          Length = 400

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 55/182 (30%), Gaps = 22/182 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +   G +L+       +   ++M
Sbjct: 176 VVVAILHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGFLLAIANKLLM 235

Query: 180 RL 181
           R 
Sbjct: 236 RR 237


>gi|15642725|ref|NP_232358.1| general secretion pathway protein F [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121726690|ref|ZP_01679915.1| general secretion pathway protein F [Vibrio cholerae V52]
 gi|147675103|ref|YP_001218219.1| general secretion pathway protein F [Vibrio cholerae O395]
 gi|153817446|ref|ZP_01970113.1| general secretion pathway protein F [Vibrio cholerae NCTC 8457]
 gi|153821264|ref|ZP_01973931.1| general secretion pathway protein F [Vibrio cholerae B33]
 gi|227082845|ref|YP_002811396.1| general secretion pathway protein F [Vibrio cholerae M66-2]
 gi|229507221|ref|ZP_04396726.1| general secretion pathway protein F [Vibrio cholerae BX 330286]
 gi|229509858|ref|ZP_04399339.1| general secretion pathway protein F [Vibrio cholerae B33]
 gi|229516979|ref|ZP_04406425.1| general secretion pathway protein F [Vibrio cholerae RC9]
 gi|229606727|ref|YP_002877375.1| general secretion pathway protein F [Vibrio cholerae MJ-1236]
 gi|254851268|ref|ZP_05240618.1| general secretion pathway protein F [Vibrio cholerae MO10]
 gi|255744311|ref|ZP_05418263.1| general secretion pathway protein F [Vibrio cholera CIRS 101]
 gi|262158579|ref|ZP_06029694.1| general secretion pathway protein F [Vibrio cholerae INDRE 91/1]
 gi|262170028|ref|ZP_06037717.1| general secretion pathway protein F [Vibrio cholerae RC27]
 gi|298500454|ref|ZP_07010258.1| general secretion pathway protein F [Vibrio cholerae MAK 757]
 gi|1170056|sp|P45780|GSPF_VIBCH RecName: Full=General secretion pathway protein F; AltName:
           Full=Cholera toxin secretion protein epsF
 gi|609627|gb|AAA58787.1| EpsF [Vibrio cholerae]
 gi|9657329|gb|AAF95871.1| general secretion pathway protein F [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121630851|gb|EAX63233.1| general secretion pathway protein F [Vibrio cholerae V52]
 gi|126512032|gb|EAZ74626.1| general secretion pathway protein F [Vibrio cholerae NCTC 8457]
 gi|126521196|gb|EAZ78419.1| general secretion pathway protein F [Vibrio cholerae B33]
 gi|146316986|gb|ABQ21525.1| general secretion pathway protein F [Vibrio cholerae O395]
 gi|227010733|gb|ACP06945.1| general secretion pathway protein F [Vibrio cholerae M66-2]
 gi|227014617|gb|ACP10827.1| general secretion pathway protein F [Vibrio cholerae O395]
 gi|229346042|gb|EEO11014.1| general secretion pathway protein F [Vibrio cholerae RC9]
 gi|229353332|gb|EEO18271.1| general secretion pathway protein F [Vibrio cholerae B33]
 gi|229354726|gb|EEO19647.1| general secretion pathway protein F [Vibrio cholerae BX 330286]
 gi|229369382|gb|ACQ59805.1| general secretion pathway protein F [Vibrio cholerae MJ-1236]
 gi|254846973|gb|EET25387.1| general secretion pathway protein F [Vibrio cholerae MO10]
 gi|255737836|gb|EET93229.1| general secretion pathway protein F [Vibrio cholera CIRS 101]
 gi|262021436|gb|EEY40148.1| general secretion pathway protein F [Vibrio cholerae RC27]
 gi|262029740|gb|EEY48389.1| general secretion pathway protein F [Vibrio cholerae INDRE 91/1]
 gi|297540623|gb|EFH76680.1| general secretion pathway protein F [Vibrio cholerae MAK 757]
          Length = 406

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 64/183 (34%), Gaps = 20/183 (10%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V++G+P+ + +  +  QS    +R+    V      G +LS+S+    
Sbjct: 67  DLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G+L   L  L+    +R+ M++K+Q   +       ++
Sbjct: 127 -----HVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPV---VLV 178

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-----------AFMLIGIMVMRLM 182
                 V+ L+    P  +   +   +                      +L+G++++  +
Sbjct: 179 VFAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYL 238

Query: 183 INF 185
           + +
Sbjct: 239 VRW 241


>gi|84394138|ref|ZP_00992871.1| Type II secretory pathway, component PulF [Vibrio splendidus 12B01]
 gi|84375240|gb|EAP92154.1| Type II secretory pathway, component PulF [Vibrio splendidus 12B01]
          Length = 407

 Score = 62.1 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/165 (10%), Positives = 46/165 (27%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
           +        +    +AG+P+  ++  +     +  +++    V+     G  LS      
Sbjct: 67  EVLVLFCRQLYSLTKAGVPLLRSMKGLTQNCENKQLKAALEDVVAELTNGRGLS-----A 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              M  +  S     +    +  G L +AL  L+         + +++            
Sbjct: 122 SMQMHPKVFSPLFVSMIGVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVISF 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           I    F ++  V             D      + +  +   +   
Sbjct: 182 ILVAMFILNIKVIPQFSSMFARFGVDLPLPTRILIGMSEFFVNYW 226



 Score = 39.7 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/132 (8%), Positives = 38/132 (28%), Gaps = 5/132 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                      ++AG+P++ ++++      +         +  Q +  ++    +     
Sbjct: 272 LSRFSRTFALMLKAGVPLNQSLSLSAEALDNRFLE-----LRVQAMKAAIEAGSTVSSTA 326

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
           +  +  +     +    +  G + E L  +S       +   K     +E      + G 
Sbjct: 327 INSEIFTPLVIQMISVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLVVVAGM 386

Query: 136 LPFCVSTLVYFT 147
           +      +    
Sbjct: 387 VLILALGIFLPM 398


>gi|330892307|gb|EGH24968.1| putative general secretion pathway protein F [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 401

 Score = 62.1 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 67/173 (38%), Gaps = 11/173 (6%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65
           KR      +     D +   + AG P+  A+A+   QS    + S    ++E    G SL
Sbjct: 56  KRKKISDAEVARFTDQLAILLEAGQPLESALALQARQSDRPAMASLLNGLLERVKGGSSL 115

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S ++         +  S F   +    +  G L E L+ L+  L   + M++ + +  + 
Sbjct: 116 SVAMGA-----EHRTFSNFYLSLVRAGEAAGMLGETLSQLATNLERSRAMRSDLISALIY 170

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                +++  +   +  L+ +  P ++ +  +      L+      M +GI +
Sbjct: 171 PA---FLVCGVFGSLVLLLTYVVPQFVPIFRDLNVPLPLITECI--MALGIFL 218


>gi|331681489|ref|ZP_08382126.1| protein transport protein HofC [Escherichia coli H299]
 gi|331081710|gb|EGI52871.1| protein transport protein HofC [Escherichia coli H299]
          Length = 400

 Score = 62.1 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 55/182 (30%), Gaps = 22/182 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLADKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +   G +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPVLTQGIMTLADFSGEWGWLLVLFGFLLAIANKLLM 235

Query: 180 RL 181
           R 
Sbjct: 236 RR 237


>gi|254552769|ref|ZP_05143216.1| hypothetical protein Mtube_20357 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
          Length = 213

 Score = 62.1 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 64/172 (37%), Gaps = 1/172 (0%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                AL+++VR +RAG     A ++   ++  PV    R V     L   ++  +    
Sbjct: 38  QALEAALELVVRELRAGAHPVRAFSIAADETGGPVAVALRAVAARSLLVAEVTAGLLAAT 97

Query: 74  RYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           R   L            + S  G  ++  +    R + +R+   A+V A    A+ASA I
Sbjct: 98  RSSALPAYWERLGVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAI 157

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +  LP     L        ++ L+    G  LL V       G++    + +
Sbjct: 158 LAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITD 209


>gi|295697644|ref|YP_003590882.1| Type II secretion system F domain protein [Bacillus tusciae DSM
           2912]
 gi|295413246|gb|ADG07738.1| Type II secretion system F domain protein [Bacillus tusciae DSM
           2912]
          Length = 566

 Score = 62.1 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 44/158 (27%), Gaps = 6/158 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
                        VRAG+P + +V ++  QS +  ++     V      G +L  + +  
Sbjct: 225 QTLAVFCRQFATLVRAGVPAARSVEILAAQSENRTLKRTLEAVAAEVRQGTALQRAFAAH 284

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P          +    +  G L   L   +      +  + K+ +  M       I
Sbjct: 285 PSVFP-----ALFIHMVGAGEFSGQLDLMLDRAALFYERERATRQKITSALMYPAVVLTI 339

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
              +   + T V  T                 + +  +
Sbjct: 340 ALGVSVFLLTSVIPTFAQTFAQQGVTLPLPTRITLGLS 377


>gi|109896505|ref|YP_659760.1| type II secretion system protein [Pseudoalteromonas atlantica T6c]
 gi|109698786|gb|ABG38706.1| type II secretion system protein [Pseudoalteromonas atlantica T6c]
          Length = 405

 Score = 62.1 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 58/173 (33%), Gaps = 7/173 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
           +D       +    ++G+P+  +V  +   S+ + +      V +    G +LS ++ R 
Sbjct: 65  EDLVIFSRQMYSLTKSGIPIIRSVKGLAETSNSERMTKILNDVCDQLERGRTLSSALHRH 124

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +             I    +  G L EA   LS  +   +  + +++A +         
Sbjct: 125 NKVFGQ-----LFVSIVHVGENTGRLDEAFLQLSDYMEREQETRKQIKAATRYPTFVILA 179

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           + +    ++  V        +    +      + +A +   I    + ++I  
Sbjct: 180 VVAALIIMNIFVIPVFANMFSSFGAELPLMTRVLLATSDFFI-TKWLHMLICI 231



 Score = 40.9 bits (94), Expect = 0.088,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 39/133 (29%), Gaps = 7/133 (5%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74
                      +R+G+P++ A+ ++    S+  +     ++ +    G SLS   S    
Sbjct: 270 LSRFARSFSMMLRSGVPLTTALNLVADAVSNAFMADRIVKMRKNIEKGESLSRVASSSKM 329

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           + P          +    +  G + E L   +       +   K     +E      +  
Sbjct: 330 FTP------LVLQMINVGEETGRVDELLGEAAEFYEREVDYDLKSLTSKIEPILIMVVAA 383

Query: 135 SLPFCVSTLVYFT 147
            +      +    
Sbjct: 384 MVLVLALGIFTPM 396


>gi|212633093|ref|YP_002309618.1| type II secretion system protein [Shewanella piezotolerans WP3]
 gi|212554577|gb|ACJ27031.1| Type II secretion system protein [Shewanella piezotolerans WP3]
          Length = 407

 Score = 62.1 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 54/160 (33%), Gaps = 6/160 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           +       I   V AGLP+ +A+  +  Q   D + S    V      G SL++S++   
Sbjct: 68  ELALLTRQIATLVAAGLPIEEALKAVGQQCEKDRLASMVMAVRSRVVEGYSLADSMAEFP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G+L   L  L+     R+ +K+K+    +       + 
Sbjct: 128 -----HIFDELYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKMTQAMIYPIVLTCVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             +   +   V     G    +  +      L ++++  +
Sbjct: 183 VGVIAILLAAVVPEVVGQFEHMGQELPWTTELLISSSDFI 222


>gi|110804168|ref|YP_687688.1| type IV pilin biogenesis protein [Shigella flexneri 5 str. 8401]
 gi|110613716|gb|ABF02383.1| Protein transport protein hofC [Shigella flexneri 5 str. 8401]
          Length = 400

 Score = 62.1 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 55/181 (30%), Gaps = 22/181 (12%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q          + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEAF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
           P          +    +L G L E    L+R  + ++ +  KV++          +   +
Sbjct: 122 PP-----LYQAMIRTGELTGKLDECCFELARQQKSQRQLTDKVKSALRYPIIILAMAIMV 176

Query: 137 PFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVMR 180
              +   V                            +   G +L+       +   ++MR
Sbjct: 177 VVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGFLLAIANKLLMR 236

Query: 181 L 181
            
Sbjct: 237 R 237


>gi|77747718|ref|NP_780104.2| fimbrial assembly protein [Xylella fastidiosa Temecula1]
          Length = 400

 Score = 62.1 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 52/166 (31%), Gaps = 6/166 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   ++AG+P+  A+ ++   Q +  +R+   ++      G SL ESIS+ 
Sbjct: 60  KDIAFFSRQMATMMKAGVPIVGALDILANGQKNPRMRTMVNQIKNDIEGGSSLYESISKH 119

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L  ++    + + +K K++       A   +
Sbjct: 120 P-----VYFDELYRNLVRAGERAGVLETVLDTVASYKENIEALKGKIRKALFYPVAIVAV 174

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
              +   +   V             +      + V  +  +     
Sbjct: 175 ALIVSSILLIYVVPQFEDVFKGFGAELPAFTQMIVNFSNFMQRWWW 220



 Score = 37.0 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 44/136 (32%), Gaps = 5/136 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                        + RAG+P+ +A+ ++ G + +     +   +      +S+  SI+  
Sbjct: 263 NSALARFSRTTAVTFRAGVPLVEALGIVAGATGN---KVYSDAVFRMRDDVSVGYSINMS 319

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           +R + +         ++   +  G L   L  ++       +      +  +E     +I
Sbjct: 320 MRQVGI--FPHMVVQMASIGEEAGALDAMLFKVAEYYEQEVSNAVDGLSSLLEPLIMVFI 377

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V  +     
Sbjct: 378 GVIVGGMVIAMYLPIF 393


>gi|283781405|ref|YP_003372160.1| type II secretion system protein [Pirellula staleyi DSM 6068]
 gi|283439858|gb|ADB18300.1| type II secretion system protein [Pirellula staleyi DSM 6068]
          Length = 398

 Score = 62.1 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 54/183 (29%), Gaps = 21/183 (11%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           D   A   +   V  G+ +S A+  I   +    ++     +      G   S +++R  
Sbjct: 61  DIIYATSQLAVMVETGITLSTALDSIASHEQHPTLKRVLLDLKRHVESGDDFSSALARHP 120

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           ++            +   S+  G   E L  ++  LR +   + KV A          + 
Sbjct: 121 QH-----FDRTYVSLIRASEQTGTTGEMLDTVALYLRSQLETRQKVMAALAYPAVMLAVA 175

Query: 134 GSLPFCVSTLVYFTS-----------PGYMNVLINDPRGHM----LLGVAAAFMLIGIMV 178
            ++   + T +               P     ++      +    L   A    +IG   
Sbjct: 176 VAVTIFLLTYILPKFEPLFSRKGVKLPSITVAMMTMSDLMIDYWYLWLAATLAAVIGYFW 235

Query: 179 MRL 181
            R 
Sbjct: 236 GRR 238



 Score = 40.9 bits (94), Expect = 0.081,   Method: Composition-based stats.
 Identities = 16/135 (11%), Positives = 40/135 (29%), Gaps = 7/135 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMV 73
               ++  +   V +G+ + DA+ +    SS+      + +V++    G  +  ++    
Sbjct: 264 ALSRSIRTLGTMVASGVSMLDAIRITSEVSSNYYFERAWLKVLDAVTEGNRICHALEGDP 323

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
            + P          +    +  G L   L  +S           K     +E      + 
Sbjct: 324 LFPP------TLVQMISAGEDTGKLDSVLQRVSSYYDKEVETSLKATTSLIEPLMITGMG 377

Query: 134 GSLPFCVSTLVYFTS 148
             +      L+    
Sbjct: 378 VVVGGIALGLLMPIF 392


>gi|237729402|ref|ZP_04559883.1| type IV pilin biogenesis protein [Citrobacter sp. 30_2]
 gi|226909131|gb|EEH95049.1| type IV pilin biogenesis protein [Citrobacter sp. 30_2]
          Length = 400

 Score = 62.1 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/163 (10%), Positives = 42/163 (25%), Gaps = 6/163 (3%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
              +  +   ++AGL +S  +A++  Q          R +                    
Sbjct: 61  AETIHQLATLLKAGLTLSTGLALLAEQHPSTQWQALLRTLAYDMEQG----ITLSASLSQ 116

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
                      +    +L G L +    L+   + ++ +  KV+           +   +
Sbjct: 117 WQHVFPPLYQAMIRTGELTGKLDDCCFELAYQQKKQQQLADKVKKALRYPIIIITMAVMV 176

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIM 177
            F +   V                     ++ +A      G +
Sbjct: 177 VFAMLQFVLPEFAAIYQTFNTPLPALTQWIITIAHCSSQWGWL 219


>gi|117929188|ref|YP_873739.1| putative integral membrane protein [Acidothermus cellulolyticus
           11B]
 gi|117649651|gb|ABK53753.1| putative integral membrane protein [Acidothermus cellulolyticus
           11B]
          Length = 272

 Score = 62.1 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 64/188 (34%), Gaps = 6/188 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + + ++       +      +    +R+G   +DA+A   G+   P  +     I     
Sbjct: 73  RRVQRQLRRTVKAELVRFGHVWAAQLRSGRVPADALAAAAGEMHHPALARLFVAIADAAR 132

Query: 62  GLSLSESISRMVRY------MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
              +       V         PL +++ ++    +  + G  L+  +   +  ++   ++
Sbjct: 133 HGDIDRVTELFVTPTAKIGGPPLADLARYAPCWRIGVESGAGLARLVERTANAIQADVDL 192

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
             +VQ      +A+  ++G+LP                 L   P G   L  A A  + G
Sbjct: 193 HQEVQTALAAPRATIRLLGALPIAGLLFGTVIGVASWQFLFRHPLGLACLSAAVALEVGG 252

Query: 176 IMVMRLMI 183
           ++  R + 
Sbjct: 253 LLWCRRIA 260


>gi|191166327|ref|ZP_03028159.1| type IV pilus assembly protein PilC [Escherichia coli B7A]
 gi|293476765|ref|ZP_06665173.1| protein transporter HofC [Escherichia coli B088]
 gi|300816142|ref|ZP_07096365.1| type II secretion system F domain protein [Escherichia coli MS
           107-1]
 gi|309796094|ref|ZP_07690506.1| type II secretion system F domain protein [Escherichia coli MS
           145-7]
 gi|190903578|gb|EDV63295.1| type IV pilus assembly protein PilC [Escherichia coli B7A]
 gi|291321218|gb|EFE60660.1| protein transporter HofC [Escherichia coli B088]
 gi|300531349|gb|EFK52411.1| type II secretion system F domain protein [Escherichia coli MS
           107-1]
 gi|308120336|gb|EFO57598.1| type II secretion system F domain protein [Escherichia coli MS
           145-7]
 gi|320200377|gb|EFW74963.1| Type IV fimbrial assembly protein PilC [Escherichia coli EC4100B]
 gi|323171268|gb|EFZ56916.1| bacterial type II secretion system protein F domain protein
           [Escherichia coli LT-68]
          Length = 400

 Score = 62.1 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 55/182 (30%), Gaps = 22/182 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTEKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +   G +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGFLLAIANKLLM 235

Query: 180 RL 181
           R 
Sbjct: 236 RR 237


>gi|325066926|ref|ZP_08125599.1| type II secretion system protein [Actinomyces oris K20]
          Length = 283

 Score = 62.1 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 1/132 (0%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           + +P A+D +V  VRAG+ + +A+  +  +  + VR +FR              S+ R+ 
Sbjct: 105 EVWPEAVDTLVSGVRAGMSLPEALTNLGERGPEAVRPQFRAFATDYAASARFDSSLDRLK 164

Query: 74  RYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                         + +     G +L   L +LS++LR+    + +++A        A +
Sbjct: 165 TRFADPVADRIVEALRLAHEVGGTDLGTLLRSLSQMLREDMRTRGELEARQSWTVNGAKV 224

Query: 133 IGSLPFCVSTLV 144
             + P+ V  L+
Sbjct: 225 AVAAPWLVLALL 236


>gi|312883313|ref|ZP_07743039.1| putative Flp pilus assembly protein TadC [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309368929|gb|EFP96455.1| putative Flp pilus assembly protein TadC [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 288

 Score = 62.1 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 59/155 (38%), Gaps = 4/155 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--TQHL 61
            IK          P  LD++   V  G+ +  ++  +  +     R   R V     +  
Sbjct: 136 RIKSNIKNISSRLPFLLDLMNVCVHTGMTIESSLEYLAKELQMVDRQLARVVTLTVERAK 195

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
            + L +++      +P  E       +    Q G ++   L+ LS+ +R+   M  + + 
Sbjct: 196 IVGLDKALQEFYDLVPTSESQSMVMTLVQSLQFGSSVGAVLSTLSKDIRELNMMDIEEKI 255

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
             M AK +  ++  +   +  L+   +P  M V+I
Sbjct: 256 GKMGAKMTMPLVVFIMIPMLVLI--VAPKVMRVMI 288


>gi|254424300|ref|ZP_05038018.1| Bacterial type II secretion system protein F domain [Synechococcus
           sp. PCC 7335]
 gi|196191789|gb|EDX86753.1| Bacterial type II secretion system protein F domain [Synechococcus
           sp. PCC 7335]
          Length = 406

 Score = 62.1 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 59/168 (35%), Gaps = 6/168 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
                   V +G+ +   + ++  Q  +P       ++      G SLSES+ +      
Sbjct: 70  FSRQFAALVSSGVALVRGIGILSDQCPNPKLKIALMQINSDVQQGTSLSESMRKHPDS-- 127

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    ++GG L E L  L+++L D   ++ ++++         ++  ++ 
Sbjct: 128 ---FDDLYVSMVQAGEVGGVLDEVLNRLAKLLEDLNRLQNQIKSAMAYPVTVGFLAVAIF 184

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             ++  +          L  +      + +  + +L    ++  +I  
Sbjct: 185 VGLTVFLLPIFAEIFVDLGAELPIFTRVLMGISKLLRTWYLVIGLIGI 232



 Score = 41.3 bits (95), Expect = 0.069,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 36/130 (27%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
                    R+G+P+  A+ ++   S + V      +   Q    S       +  +   
Sbjct: 275 FCRTFGSLSRSGVPILTALEIVRDTSGNQV--IANAINAAQVEIQSGGMISPALAEHGVF 332

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                 +  +    +  G L + L  ++    D      K     ME      + G +  
Sbjct: 333 PV---MAIQMIAIGEETGELDQMLMKVADFYEDEVEQAVKALTSIMEPIMIVVLGGMVGS 389

Query: 139 CVSTLVYFTS 148
            +  +     
Sbjct: 390 ILVAMYLPMF 399


>gi|303241938|ref|ZP_07328431.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
 gi|302590493|gb|EFL60248.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
          Length = 289

 Score = 62.1 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 66/155 (42%), Gaps = 2/155 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K  + KR           ++++  + +AGL   +A+  I   ++  +  E +R+ +  +
Sbjct: 131 IKRKVDKRKDILNATILYYVELLSTACQAGLNTENAIERIADNTNSILADEIKRIWKESY 190

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
              +  E+I  M++     EV  F   +    ++G  +++ L + +R +R R   +   +
Sbjct: 191 KTKTREEAIQDMIQRCGTNEVRLFMESVGQGLEMGTPVTDILKDQARSIRSRAKSEIVKK 250

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
               + K    +I  L   V  L+   +P  + ++
Sbjct: 251 GELAKVKIVFPMILFLLPSV--LLVALTPALITLM 283


>gi|225375136|ref|ZP_03752357.1| hypothetical protein ROSEINA2194_00760 [Roseburia inulinivorans DSM
           16841]
 gi|225213010|gb|EEG95364.1| hypothetical protein ROSEINA2194_00760 [Roseburia inulinivorans DSM
           16841]
          Length = 220

 Score = 62.1 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 63/166 (37%), Gaps = 10/166 (6%)

Query: 1   MKHLIKKRTAK----FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRS 50
           ++   KKR  +     L  F +A+  +  +++AG  + +A      +             
Sbjct: 49  IQREKKKRREQQKETLLLQFRDAMQSVAAALQAGYSMENAWRESEKEMTELYGQDGIFVG 108

Query: 51  EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
           E  ++ +   +   + + +         +++  FS V     + GG+  + +A     + 
Sbjct: 109 ELHQINQAVGMNQPIEKLLYEFALRSDCEDIQNFSDVFLFAKRSGGDFHKIIATTIEHIS 168

Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
           D+  ++ +VQ +    K    I+  +P  +   +  TS  +   ++
Sbjct: 169 DKIEVEREVQTVISAKKMEQKIMNVIPVFIILYLNLTSGEFFGTIV 214


>gi|322834404|ref|YP_004214431.1| Type II secretion system F domain protein [Rahnella sp. Y9602]
 gi|321169605|gb|ADW75304.1| Type II secretion system F domain protein [Rahnella sp. Y9602]
          Length = 406

 Score = 62.1 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 60/184 (32%), Gaps = 9/184 (4%)

Query: 1   MKHLIKKRT-AKF--LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57
           +K  +K+R   +F    +    +  +   ++AGLP+ +++ ++  +   P        + 
Sbjct: 50  LKIRMKQRLGRRFWKNQERVAFVRQLATLLQAGLPLVNSLTLLANEHPKPAW----HCVL 105

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
           +             +               I    +L G L +    L+     +  +++
Sbjct: 106 SNVAKGVREGKPLSVTLNHYPDVFPDIYRQIISIGELTGQLDKCCLQLATQQEQQAELRS 165

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIG 175
           KV+         + I   +   + TLV             +      ML+  + A +  G
Sbjct: 166 KVKKALRYPLIVSVIAIVVTLLMLTLVLPEFAKIYASFDAELPWFTRMLVIASGALISTG 225

Query: 176 IMVM 179
             ++
Sbjct: 226 PWLV 229



 Score = 41.6 bits (96), Expect = 0.043,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 45/134 (33%), Gaps = 7/134 (5%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74
                  +  + +AG+ +   +A      S+   ++   ++ E    G  L ++  +   
Sbjct: 272 LSQIFQTLAMTQQAGMTLIAGLAAASASMSNLHFQAALNQIREQIMQGTPLHKAFVQSPL 331

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                        +    +  G+L E L  L+ +  D+ N  A+  + ++E    A +  
Sbjct: 332 ------FPTLCHQLIKIGEESGSLDELLLKLAYLHHDKANSLAETLSQTIEPVLMAVMGV 385

Query: 135 SLPFCVSTLVYFTS 148
            +   V  +     
Sbjct: 386 IVGGLVIAMYLPIF 399


>gi|300813874|ref|ZP_07094179.1| type II secretion system F domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512061|gb|EFK39256.1| type II secretion system F domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 389

 Score = 61.7 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/149 (10%), Positives = 55/149 (36%), Gaps = 6/149 (4%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
            +   +++G+ + +A+ ++    ++  R+   ++ +  H G+SLS+++++  ++      
Sbjct: 67  QLALILKSGIVLEEALKIVADNFNEKKRNILLKISQDLHSGISLSQAMAQSKKFTD---- 122

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F   +    +   NL +    L+   +  + ++  + +          +   +   + 
Sbjct: 123 --FIVSLVDVGENSSNLEQVFRKLASFYKREEKLRKNIYSTLTYPIILIIVSALVVNFLM 180

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             V  T     +           L +  +
Sbjct: 181 LNVIPTFADIYDQAGESLPLMTRLLIGFS 209


>gi|282883324|ref|ZP_06291918.1| putative type II secretion system protein F [Peptoniphilus
           lacrimalis 315-B]
 gi|281296828|gb|EFA89330.1| putative type II secretion system protein F [Peptoniphilus
           lacrimalis 315-B]
          Length = 389

 Score = 61.7 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/149 (10%), Positives = 55/149 (36%), Gaps = 6/149 (4%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
            +   +++G+ + +A+ ++    ++  R+   ++ +  H G+SLS+++++  ++      
Sbjct: 67  QLALILKSGIVLEEALKIVADNFNEKKRNILLKISQDLHSGISLSQAMAQSKKFTD---- 122

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F   +    +   NL +    L+   +  + ++  + +          +   +   + 
Sbjct: 123 --FIVSLVDVGENSSNLEQVFRKLASFYKREEKLRKNIYSTLTYPIILIIVSALVVNFLM 180

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             V  T     +           L +  +
Sbjct: 181 LNVIPTFADIYDQAGESLPLMTRLLIGFS 209


>gi|21244268|ref|NP_643850.1| general secretion pathway protein F [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21109914|gb|AAM38386.1| general secretion pathway protein F [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 391

 Score = 61.7 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/183 (10%), Positives = 56/183 (30%), Gaps = 5/183 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ L++K+              +   + AG P+  A+++++         E  R +    
Sbjct: 40  LRMLLRKKPFD-NAALVQFTQQLATLIGAGQPLDRALSILMD----LPEDEKSRRVIGDV 94

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                  +             S     +    + GG++ + L  L+  L   + ++ KV 
Sbjct: 95  RDTVRGGAPLSSALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKVI 154

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
              +       ++G     +   V          L           ++   ++    ++ 
Sbjct: 155 NALIYPAILLAVVGCALLFLLGYVVPQFAQMYESLDVALPWFTQAVLSVGLLVRDWWIVL 214

Query: 181 LMI 183
           +++
Sbjct: 215 IVV 217


>gi|309802104|ref|ZP_07696214.1| conserved hypothetical protein [Bifidobacterium dentium JCVIHMP022]
 gi|308221305|gb|EFO77607.1| conserved hypothetical protein [Bifidobacterium dentium JCVIHMP022]
          Length = 249

 Score = 61.7 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 59/165 (35%), Gaps = 5/165 (3%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           +  +  SVR+G  +  A   + G +         R+           E   +M R     
Sbjct: 86  VAALQASVRSGATLVQAFEELGGCAFATPELTRSRIEMVLRCRCPPEEQGEQMRRL---- 141

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
             +       +   LG   S  LA +   L+ ++ +    +      +A+  ++ +LP  
Sbjct: 142 -SAELYAACQLSMALGCETSRCLAAVLASLKRQRLLNDLRRNAFAMPQATVKLLMALPLL 200

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
              L        +  L  D RG + LG A     IG++ +R+++ 
Sbjct: 201 TVLLGEGMGARPLAFLCGDARGLLCLGFALGCYAIGLLWIRVLLR 245


>gi|91787227|ref|YP_548179.1| general secretion pathway protein F [Polaromonas sp. JS666]
 gi|91696452|gb|ABE43281.1| General secretion pathway protein F [Polaromonas sp. JS666]
          Length = 410

 Score = 61.7 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 7/161 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             +       +   V +GLP+  A+  +  ++ D  +      +  +  G     +    
Sbjct: 70  TANLTIWTRQLAGLVSSGLPLERALTALTDEAEDEKQRNLVAALRAEVNGG----ASFAR 125

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                  E S     +    +  G L   L  L+  L +R+ +KAK+   ++       +
Sbjct: 126 ALSHHPGEFSAIYIAVIGAGEQTGYLGLVLERLADDLEERQTLKAKLIGAALYPA---IV 182

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
                  V  LV +  P   +V     R    L VA   + 
Sbjct: 183 TLVAIVIVMFLVGYVVPQVASVFAGTKRALPFLTVAMLAIS 223



 Score = 37.0 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 40/130 (30%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       S+          +     G  L+ ++++  R+  
Sbjct: 279 FASTLAMLAGAGVPILKALQAAAETLSNRAMRADALDALLLVREGAPLASALAQKKRFPG 338

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                   ++ +   +  G L   L   +  L +    +A   A  +E      +   + 
Sbjct: 339 ------LVSMFARLGEQTGQLPVMLQRAALQLSNEVQRRAMALATILEPLLIVAMGLVVM 392

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 393 LIVLAVLLPI 402


>gi|312882864|ref|ZP_07742596.1| general secretion pathway protein F [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369383|gb|EFP96903.1| general secretion pathway protein F [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 408

 Score = 61.7 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 56/160 (35%), Gaps = 6/160 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V++G+P+ + +  +  QS    +R+    V      G +L++S++   
Sbjct: 69  DLALITRQLSTLVQSGMPLEECLKAVSEQSEKPRIRTMLLAVRSKVTEGYTLADSLADFP 128

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G+L   L  L+    +R+ M++K+Q   +         
Sbjct: 129 -----HVFDELFRSMVAAGEKSGHLDAVLERLADYAENRQKMRSKLQQAMIYPIVLVVFA 183

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             +   +   V     G    +  +      + ++A+  +
Sbjct: 184 VGIVAFLLAAVVPKIVGQFIQMGQELPQSTQILLSASDFI 223


>gi|238797693|ref|ZP_04641188.1| Type II secretion system protein [Yersinia mollaretii ATCC 43969]
 gi|238718445|gb|EEQ10266.1| Type II secretion system protein [Yersinia mollaretii ATCC 43969]
          Length = 365

 Score = 61.7 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 55/184 (29%), Gaps = 21/184 (11%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
           +        +   ++AGLP+ +++ ++  +    P R   + + +    G SLSE+++  
Sbjct: 25  ERLIVVTRQLATLLQAGLPLVNSLQLLAKEMDALPWRCLLQEINQQVSQGQSLSEAMAHY 84

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R  P          +    +L GNL +    L      ++ ++ KV            I
Sbjct: 85  PRIFPQLYPP-----VIAMGELTGNLEQCCIQLVEHQERQQKLQKKVVKALKYPVFVCII 139

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGH---------------MLLGVAAAFMLIGIM 177
              +   +  +V                                   + +    +  G +
Sbjct: 140 ALVVSVVMLVMVLPEFAQIYQSFDTPLPALTASLLSISAFLTDYGPCIAIVLISLCSGYL 199

Query: 178 VMRL 181
             R 
Sbjct: 200 YARR 203


>gi|332982952|ref|YP_004464393.1| Type II secretion system F domain-containing protein [Mahella
           australiensis 50-1 BON]
 gi|332700630|gb|AEE97571.1| Type II secretion system F domain protein [Mahella australiensis
           50-1 BON]
          Length = 301

 Score = 61.7 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 66/184 (35%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +    R  K    F      +   +RA   +  A+  +   +  P++      I    
Sbjct: 113 LDNRRSNRIYKLEQQFGAFTRDVSVYLRANPNLYRAIESVTEYAGQPLKQYLDAFIRRVE 172

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + ES+ +      +  +S +   I        ++++   + +  +  +      + 
Sbjct: 173 SGEPIDESLKQFKTETNIDSISEWVDSIIFARMAKSDITDVCDHSADRINRKLVRGMNIH 232

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+  + K +A+ +  L   +      +S    +++++   G M+L    A + I   ++ 
Sbjct: 233 AVLSKTKGAAFAMLGLIALMVVYTILSSAETKDLILSTGTGQMILIYVIASLFITTYIIM 292

Query: 181 LMIN 184
             I+
Sbjct: 293 KQID 296


>gi|254252516|ref|ZP_04945834.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158]
 gi|124895125|gb|EAY69005.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158]
          Length = 333

 Score = 61.7 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 60/158 (37%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           +K     R    +D+ P  +D++      GL +  ++ V+          + SE      
Sbjct: 171 VKRRAAARRQSVVDELPLLVDMLRLLQGVGLSLDQSLQVVTNDFRGMLPVLSSEVGIAQR 230

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+ R+      +++     ++    + GG + E L      LR+ +    
Sbjct: 231 QFAAGRTREQSLQRLSGGFDNEDLRAVVRLMIQVDKHGGAVQEPLKQFGDRLRETRRAML 290

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +   +  K +  ++ +L   +  L+    PG + V+
Sbjct: 291 RERIGRLTVKMTGVMVLTLLPAL--LIVTAGPGMLAVM 326


>gi|84489955|ref|YP_448187.1| type II secretion protein F [Methanosphaera stadtmanae DSM 3091]
 gi|84373274|gb|ABC57544.1| predicted type II secretion protein F [Methanosphaera stadtmanae
           DSM 3091]
          Length = 277

 Score = 61.7 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 55/141 (39%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
            L   P  L  +   ++AG+ + DA+  +   +   +  EF+  +     G +  E+   
Sbjct: 101 ILKVIPYVLRELSIELKAGIGLFDAIEEVSNGNYGQLSKEFKITLNEIKYGTNYIEAFEN 160

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           + + + L  +    + ++     GGNL++ L  L+        +K K  +  + +    +
Sbjct: 161 LSKRINLPIMEKIVSHMNRTIINGGNLADTLNILANENSRNMQIKYKEYSEKLNSLMILY 220

Query: 132 IIGSLPFCVSTLVYFTSPGYM 152
           +  ++   V   +   +   +
Sbjct: 221 MFTTVVIPVILFIMIIAATTV 241


>gi|253580448|ref|ZP_04857713.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848178|gb|EES76143.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 348

 Score = 61.7 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 8/156 (5%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-------GQSSDPVRSEFRRVIET 58
           +KR  + L D+P  +      V+AG+ V  A   I         ++  P   E R V   
Sbjct: 191 QKRYEELLMDYPGLIMKFTLLVQAGMTVRKAFQKISLDYGRKRKRNPRPAYEEIRIVCYE 250

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKA 117
              G+S SE+  R        +   F+T++     +    +++ L   S    + +  KA
Sbjct: 251 MESGVSESEAYRRFGERCGQAKYKTFATLLIQNLQKGSRQMADMLERESTEAWEERKRKA 310

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153
           +V   +   K    +I  L   ++ ++      +  
Sbjct: 311 RVLGEAAATKLLVPMIMMLIVVMAIVMIPAFMSFYG 346


>gi|302392522|ref|YP_003828342.1| type II secretion system F domain protein [Acetohalobium arabaticum
           DSM 5501]
 gi|302204599|gb|ADL13277.1| Type II secretion system F domain protein [Acetohalobium arabaticum
           DSM 5501]
          Length = 403

 Score = 61.7 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 46/155 (29%), Gaps = 4/155 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   +K+     L D           + AG+ +  A+ ++  Q+ +P   E  R ++   
Sbjct: 52  LGDKLKQFKKVKLKDLALFCRQFATMIDAGVSLVRALDILGDQTGNPKLREAIRSVQEHV 111

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G                         +    + GG L E L  ++        MK ++ 
Sbjct: 112 EGG----VSLSNALEEEDHVFPRLFISMVEAGETGGILDEVLLEMADHFEKENEMKQQIT 167

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +          +   +   + T++  T       +
Sbjct: 168 SALAYPAVITLVAVGVVVFLVTVILPTFVDIFAGM 202


>gi|297627360|ref|YP_003689123.1| hypothetical protein PFREUD_22090 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296923125|emb|CBL57712.1| Hypothetical membrane protein [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 297

 Score = 61.7 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 60/165 (36%), Gaps = 2/165 (1%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            + +++ SV  G  V DA+     Q +  +R+    +I       S + ++  M   +  
Sbjct: 109 WVRLLIGSVSTGKSVPDAIRATRNQVAPVLRAPVDGLIARLDARWSTASALRAMADDLAH 168

Query: 79  QEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +       + V   + G    +AL  L +  R R     ++     + +     +  + 
Sbjct: 169 PDADAIIAALIVATRRGGTGTGDALRALGQHSRRRLQSLREIATERAKPRIVVRQVTLIT 228

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
             V   V   +P Y+      P G +L     A  L  ++++R M
Sbjct: 229 VVVLVGVAVFNPDYVAP-YLTPTGQLLGAGLLAAYLGSLVMLRRM 272


>gi|262172502|ref|ZP_06040180.1| type II secretory pathway component PulF [Vibrio mimicus MB-451]
 gi|261893578|gb|EEY39564.1| type II secretory pathway component PulF [Vibrio mimicus MB-451]
          Length = 408

 Score = 61.7 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/165 (10%), Positives = 45/165 (27%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72
           +        +    +AG+P+  ++  +     +    E    V      G SLS      
Sbjct: 67  EVLVIFCRQMYSLTKAGVPLLRSMRGLTQNCHNKQLKEALESVCNELTNGRSLS-----A 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +     S     +    +  G L +AL  L+         + +++            
Sbjct: 122 SMQLHPGVFSPLFVSMIQVGENTGRLDQALLQLANYYEQEVETRKRIKTAMRYPTFVIIF 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           + +  F ++  V        +    D      + +  +   +   
Sbjct: 182 VVTAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYW 226



 Score = 40.1 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/135 (10%), Positives = 41/135 (30%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         + AG+P++ ++A+      +    E R +     +   +S S++ +
Sbjct: 269 RAQLSRFSRTFSLMLSAGVPLNQSLALSAEAIDNKFL-EQRILEMKSQIEAGVSVSVTAV 327

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                ++  +     +    +  G + E L  +S       +   K     +E     ++
Sbjct: 328 ----NVKIFTPLVIQMISVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLVFV 383

Query: 133 IGSLPFCVSTLVYFT 147
              +      +    
Sbjct: 384 AAMVLVLALGIFLPM 398


>gi|253689233|ref|YP_003018423.1| general secretion pathway protein F [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755811|gb|ACT13887.1| general secretion pathway protein F [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 408

 Score = 61.7 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 54/160 (33%), Gaps = 9/160 (5%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLS 64
           +++      D       +   V A LP+ +A+  +  QS    +      V      G S
Sbjct: 60  RRKIRISTSDLALLTRQLATLVAASLPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHS 119

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L++++                  +    +  G+L E L  L+     R+ M++++Q   +
Sbjct: 120 LADAMKCFP-----SSFERLYCAMVAAGETSGHLDEVLNRLADYTEQRQQMRSRIQQAMI 174

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
                  +       VS L+    P  +   I+  +   L
Sbjct: 175 YP---CVLTVVAIAVVSILLSVVVPKVVEQFIHMKQALPL 211


>gi|154151944|ref|YP_001405562.1| type II secretion system protein [Candidatus Methanoregula boonei
           6A8]
 gi|154000496|gb|ABS56919.1| type II secretion system protein [Methanoregula boonei 6A8]
          Length = 450

 Score = 61.7 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 70/190 (36%), Gaps = 11/190 (5%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L K+ T K  + +   L  +   +R GL    AV  +       +    R    +   G 
Sbjct: 126 LQKRSTRKKEELYTEFLFKLSELMRGGLDPVKAVKELAKTDLGVLTPHIRIASTSMTFGK 185

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S  ES+  M + +    +  ++ ++   S  GG++++ +   S  +R   +++ + +   
Sbjct: 186 SFEESMKAMAQSLHSDLIRRYTMLVVQASYSGGSVADLILKASEDMRSIISIEREKEGNL 245

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMN------VLINDPRGHMLLGVAAAFMLI--- 174
            +     +   ++   +  ++  +   ++       +      G++        M+I   
Sbjct: 246 HQYVMIFYFAQAIIIFIVYILTTSLLPFVEQLGATQMFGKTDIGNIDFARGFFHMIILNS 305

Query: 175 --GIMVMRLM 182
             G +++  +
Sbjct: 306 LFGGLIIGKI 315


>gi|90580241|ref|ZP_01236048.1| putative Type IV pilin biogenesis protein [Vibrio angustum S14]
 gi|90438543|gb|EAS63727.1| putative Type IV pilin biogenesis protein [Vibrio angustum S14]
          Length = 407

 Score = 61.7 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 48/175 (27%), Gaps = 4/175 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
             L K R     +D       +   + +G+PV  A+ ++    +        R    Q  
Sbjct: 55  SFLTKMRDQMKGEDVTAVTRQLATMIESGVPVVQALQLMASSYN----KAEMRATLLQIT 110

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
               S +               F   +    +  G+L +  A ++      + M+ KV  
Sbjct: 111 TQVESGASLSSAMRSSSPLFDKFFCDLVATGEQTGHLGQVFARIAVYREKNEAMRKKVIK 170

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
             +           +   +   V        +    +      + V A+  LI  
Sbjct: 171 AMIYPAMVTLTAVLVTVLMLVFVIPQFAQIFSSFGAELPLFTQIVVHASDFLIAY 225


>gi|58580471|ref|YP_199487.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188578592|ref|YP_001915521.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|58425065|gb|AAW74102.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188523044|gb|ACD60989.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 405

 Score = 61.7 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/183 (10%), Positives = 56/183 (30%), Gaps = 5/183 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ L++K+              +   + AG P+  A+++++         E  R +    
Sbjct: 54  LRMLLRKKPFD-NAALVQFTQQLATLIGAGQPLDRALSILMD----LPEDEKSRRVIGDV 108

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                  +             S     +    + GG++ + L  L+  L   + ++ KV 
Sbjct: 109 RDTVRGGAPLSSALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKVI 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
              +       ++G     +   V          L           ++   ++    ++ 
Sbjct: 169 NALIYPAILLAVVGCALLFLLGYVVPQFAQMYESLDVALPWFTQAVLSVGLLVRDWWLVL 228

Query: 181 LMI 183
           +++
Sbjct: 229 IVV 231


>gi|134298887|ref|YP_001112383.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
 gi|134051587|gb|ABO49558.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
          Length = 401

 Score = 61.7 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 53/166 (31%), Gaps = 6/166 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
            +             +G+P+  ++ ++  Q+ +  ++     + E    G SL +++S  
Sbjct: 63  KELALFCRQFATLSSSGVPIVQSLYLLKEQTGNKALKGALEAIAEDLQGGKSLGQALSS- 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 +  S F   +    ++ G+L   L  L+        ++ K +           +
Sbjct: 122 ----HHKIFSAFFINMVEAGEMSGSLDHVLDRLADYFERAYELREKFKTAITYPAFIMSM 177

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                 CV   V  T    +  L         + +  +  L G  V
Sbjct: 178 AICTIGCVFIFVLPTFAQIIIELQAPISLPTAIVIQISEWLKGNWV 223


>gi|51246634|ref|YP_066518.1| type 4 fimbrial assembly protein (PilC) [Desulfotalea psychrophila
           LSv54]
 gi|50877671|emb|CAG37511.1| probable type 4 fimbrial assembly protein (PilC) [Desulfotalea
           psychrophila LSv54]
          Length = 401

 Score = 61.7 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/171 (12%), Positives = 54/171 (31%), Gaps = 6/171 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
            D      ++   + AGLP+   + ++  Q  +P  +    ++      G +L++S+ + 
Sbjct: 63  KDIVIFTRMLSTMIDAGLPLVQGIEILEQQQENPTFKKAIGKIKGDVESGTTLADSMRKH 122

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +           T +    + GG L   L  L+  +     +K K++           I
Sbjct: 123 PKI-----FDKLFTNMIEAGETGGILDTILQRLAAFMEKSMALKKKIKGAMTYPTICLAI 177

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
              +   +   V            +       + V  +      ++  L+ 
Sbjct: 178 SILILIIILVFVVPVFSQMFADFGSSLPLPTQIVVNMSDFFKNNIIYMLIA 228



 Score = 43.2 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 41/131 (31%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   +++G+P+ +A+ V+   + + +      RV +    G  ++E +        
Sbjct: 271 FTRTLSTMLQSGVPILEALQVVAKTAGNKIIERAVFRVADGIAEGRPMAEPLEESG---- 326

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                   T +    +  G L   L  ++       +         +E     ++ G + 
Sbjct: 327 --VFPNMVTQMINVGESVGALDAMLEKIADFYDGEVDQAVDNLTAMIEPFMMVFLGGMIG 384

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 385 GLVVAMYLPIF 395


>gi|312127122|ref|YP_003991996.1| Type II secretion system F domain-containing protein
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777141|gb|ADQ06627.1| Type II secretion system F domain protein [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 403

 Score = 61.7 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 49/174 (28%), Gaps = 8/174 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQ 59
           +   +KKR +    +           + AG+ V + + V+  Q+           + E  
Sbjct: 52  INLRVKKRIS--TKELFIFCRQFATMLMAGISVLNCLDVLRTQNRGKYFGKVLNDLYEEV 109

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G  LS ++       P          +    +L G+L  A+  ++        +K K+
Sbjct: 110 SKGNPLSSAMHEHRDIFP-----SILIHMVEAGELSGSLDTAMDKMAIHFEKEMKLKQKI 164

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
               +       +   +   +   V          L        L  +     L
Sbjct: 165 VNALIYPVIVISVASLVFLFLLIFVIPAFVEIFAQLNVQLPSITLFIINLGVFL 218



 Score = 37.0 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 42/131 (32%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+ +  A+       S+  +   F  VIE    G  LS+ IS +     
Sbjct: 271 FTRTLATLLGAGVNLLTALDTTKRVISNAYIEKAFEGVIERVRGGEGLSQPISEL----- 325

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +      +V+    +  G L   L   +    +    +        E     ++   + 
Sbjct: 326 -KIFPPLVSVMLRTGEETGRLEYMLEKAADFYENEVENQITRLTALFEPLMIIFLALMVG 384

Query: 138 FCVSTLVYFTS 148
           F V +++    
Sbjct: 385 FLVISIILPLF 395


>gi|320179666|gb|EFW54615.1| Type IV fimbrial assembly protein PilC [Shigella boydii ATCC 9905]
 gi|332095395|gb|EGJ00418.1| bacterial type II secretion system protein F domain protein
           [Shigella boydii 5216-82]
          Length = 400

 Score = 61.7 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 55/182 (30%), Gaps = 22/182 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +   G +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGKWGWLLVLFGFLLAIANKLLM 235

Query: 180 RL 181
           R 
Sbjct: 236 RR 237


>gi|218555534|ref|YP_002388447.1| General secretion pathway protein F [Escherichia coli IAI1]
 gi|218362302|emb|CAQ99923.1| General secretion pathway protein F [Escherichia coli IAI1]
 gi|323183548|gb|EFZ68945.1| general secretion pathway protein F [Escherichia coli 1357]
          Length = 407

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +        L+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHSLPASTRTLIAMSDALQASGVYW 229


>gi|292656513|ref|YP_003536410.1| type IV pilus biogenesis complex membrane subunit [Haloferax
           volcanii DS2]
 gi|291371605|gb|ADE03832.1| type IV pilus biogenesis complex membrane subunit [Haloferax
           volcanii DS2]
          Length = 708

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 58/140 (41%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           FP+ L+++  + + G+ + +++A++   S+  +  E R +            ++      
Sbjct: 497 FPDTLNLLSSANQMGISLVESLALVSRWSTGALADELRALRNDIRWNHDAHAALMAFATR 556

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
           + + ++S    +I+   +  G+LS  L+  +   R+R  ++   +       A   I   
Sbjct: 557 LNVPQLSRVIRLIASGGRTSGDLSRVLSVAAEDTRNRYKLEKSRRRAMGSYIAIVVIGYF 616

Query: 136 LPFCVSTLVYFTSPGYMNVL 155
           +   V  ++  +  G +  +
Sbjct: 617 VYLFVILMIGASYLGPLAEM 636



 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/180 (10%), Positives = 53/180 (29%), Gaps = 4/180 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           K   + R        P+A+  +      G+   + +  +        V  EF  +     
Sbjct: 156 KSRAEMRGRSIDILLPHAIVYMYALSHGGMSFLEVIRSVADAPDYGEVSREFEMIARDMD 215

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           L    L  ++       P      F   +      GG+++  L   S    +    + + 
Sbjct: 216 LFGNDLFTALRNSRNLTPSINFEQFLDDLLSVLDSGGDVTAFLDRESATYLEEARDEQED 275

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
              ++   +  ++   +   +  +V      ++    +       L      + +G+ ++
Sbjct: 276 FIETLSMLSEVFVAAFVAAPLLLIVTLMVISFLG--GDTLVQLYALNYLIFPLGMGLFLL 333


>gi|134298693|ref|YP_001112189.1| hypothetical protein Dred_0826 [Desulfotomaculum reducens MI-1]
 gi|134051393|gb|ABO49364.1| hypothetical protein Dred_0826 [Desulfotomaculum reducens MI-1]
          Length = 334

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 70/171 (40%), Gaps = 1/171 (0%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           ++ +K+ +  P+A+ +I   +      + A+  +V +S +P RS FRRV+E  + G    
Sbjct: 155 QKRSKYTEQIPSAIRVISTVLEDTNDFTRALENVVERSPEPTRSLFRRVLERLNHGEQRK 214

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +    + + M        + V+    + G         L+        ++   + L + +
Sbjct: 215 KVFGLIPKAMGTGHSIMLANVLEEGYRHGVAALPMFNTLASQFDTMHKLELNNKVLLIPS 274

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           + S+ ++      +  L     P  M  + ++  G  L+ +    M+I I+
Sbjct: 275 RFSSVLLHIGVVALVLLSTRLVPDAMKYITDN-IGKSLVVLCFVSMIINIV 324


>gi|332671124|ref|YP_004454132.1| Type II secretion system F domain-containing protein [Cellulomonas
           fimi ATCC 484]
 gi|332340162|gb|AEE46745.1| Type II secretion system F domain protein [Cellulomonas fimi ATCC
           484]
          Length = 310

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 64/156 (41%), Gaps = 6/156 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   + +R ++ L + P   +++  +V AG   + A+  +V  +   + +E  R +    
Sbjct: 155 LGRQVAQRESRMLQEMPTVAELLALAVGAGEGATGALERVVRSTRGELTAELERTLADAR 214

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L+ ++  +     L  ++ F+  ++V  + G  L+E L   ++ +R+      +V+
Sbjct: 215 AGAPLTAALDGLADRTGLAALARFAEGVAVAVERGTPLAEVLRAQAQDVRE------EVR 268

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
              ME      +   +P     L    +      L+
Sbjct: 269 RDLMETGGRKEVAMMVPVVFLILPVTVAFAVFPSLL 304


>gi|257875283|ref|ZP_05654936.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
 gi|257809449|gb|EEV38269.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
          Length = 403

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/182 (11%), Positives = 51/182 (28%), Gaps = 21/182 (11%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVR 74
               L      + +G+ + DA  ++  Q  +   +     V +    G  LSE+      
Sbjct: 65  LVGYLRQFSTLIASGITIVDASRMLEEQQKNPNFKKILGEVRDEIDSGRPLSEAYKDHPN 124

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
             P        T +   S++ G+L   L +++         ++ +    +       +  
Sbjct: 125 AFP-----TLLTSVIAVSEMSGSLEGNLKDMADYYEKSAENRSGIVTAMVYPIILVILTF 179

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGH---------------MLLGVAAAFMLIGIMVM 179
            +   +  ++             D                    +L V      +G+ + 
Sbjct: 180 IVGIILLVMIVPMFVEVFEGFDADLPTITVATMAISEFLQTRGWVLAVLIVGFFVGLWIA 239

Query: 180 RL 181
           R 
Sbjct: 240 RR 241



 Score = 35.1 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 43/136 (31%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
           + F   +  +   + + + +  A+ +     S+  ++            G  +S+     
Sbjct: 266 NSFSLFMTTMSTLLSSSVGMVTALNMSRDVVSNKYIKRIIDNCAFQIEEGGKMSDVFR-- 323

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                   V    T +    +  G+L + L  LS I +   +  +K     ME      I
Sbjct: 324 ----GNMMVPMLVTQMVEIGESTGSLEDMLKRLSIIYQKEVDETSKRLKTIMEPIVILII 379

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V+ ++    
Sbjct: 380 CVIVGLIVAAIMIPMF 395


>gi|241667100|ref|YP_002985184.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862557|gb|ACS60222.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 300

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 66/153 (43%), Gaps = 4/153 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLG 62
             + R  +   +FP  LD++V + +A   + +++ +    +   V   E  + ++   LG
Sbjct: 146 KAQDRKERISREFPYFLDLVVMTQQAQATLPESLRLYAEAAPGTVMSEEIEQTLKDVALG 205

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             + E++ R+ R M  +EV      +      G N  E L   +R LR R   + +    
Sbjct: 206 TGMIEALQRLERRMTAEEVIRVIRAVIQGEVEGSNRVELLREHARDLRFR---RWEKADR 262

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + E   +  ++ ++   VS L+   +P  + ++
Sbjct: 263 ASEKLKAKIVMPAMMIVVSILLLVLAPAIVEMM 295


>gi|84622429|ref|YP_449801.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|84366369|dbj|BAE67527.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 405

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/183 (10%), Positives = 56/183 (30%), Gaps = 5/183 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ L++K+              +   + AG P+  A+++++         E  R +    
Sbjct: 54  LRMLLRKKPFD-NAALVQFTQQLATLIGAGQPLDRALSILMD----LPEDEKSRRVIGDV 108

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                  +             S     +    + GG++ + L  L+  L   + ++ KV 
Sbjct: 109 RDTVRGGAPLSSALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRDKVI 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
              +       ++G     +   V          L           ++   ++    ++ 
Sbjct: 169 NALIYPAILLAVVGCALLFLLGYVVPQFAQMYESLDVALPWFTQAVLSVGLLVRDWWLVL 228

Query: 181 LMI 183
           +++
Sbjct: 229 IVV 231


>gi|29826726|ref|NP_821360.1| integral membrane protein [Streptomyces avermitilis MA-4680]
 gi|29603822|dbj|BAC67895.1| putative integral membrane protein [Streptomyces avermitilis
           MA-4680]
          Length = 309

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 63/185 (34%), Gaps = 4/185 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            + ++R  +           +   +R G+ +  A+      + D +  +   + +   LG
Sbjct: 98  QMAQERIGQLE-ALSEWTQRLAGLLRLGMGLEQAMITSRQGAPDELAPQIVNLSDRLRLG 156

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQA 121
                ++      +           + +     G  L++AL +L+  +RD    K  ++A
Sbjct: 157 WRPDGALRAFAEELNDVTADKVVAALILSVNDRGPGLAQALEDLAGTVRDEVAKKRAIEA 216

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
              + + +   +  +   V     F  P Y     +   G ++L       +  + +MR 
Sbjct: 217 DRAKPRTTVRWMTVITVGVVVA-GFFVPSYTKP-YSTLLGQLVLAFLTVGFIGVLALMRQ 274

Query: 182 MINFD 186
           +  F 
Sbjct: 275 LGAFR 279


>gi|332308474|ref|YP_004436325.1| Type II secretion system F domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175803|gb|AEE25057.1| Type II secretion system F domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 405

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 53/165 (32%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
           +D       +    ++G+P+  +V  +    SS+ +      V +    G +LS ++ R 
Sbjct: 65  EDLVIFSRQMYSLTKSGIPIIRSVKGLAETSSSERMTQILNDVCDQLERGRTLSSALHRH 124

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +             I    +  G L EA   LS  +   +  + +++A +         
Sbjct: 125 NKVFGQ-----LFVSIVHVGENTGRLDEAFLQLSDYMEREQETRKQIKAATRYPTFVILA 179

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           + +    ++  V             +      + +A +   I   
Sbjct: 180 VVAALVIMNIFVIPVFANMFTSFGAELPLMTRILLATSDFFITKW 224



 Score = 40.5 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/133 (11%), Positives = 40/133 (30%), Gaps = 7/133 (5%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74
                      +R+G+P++ A+ ++    S+  +  +  ++ +    G SLS   +    
Sbjct: 270 LSRFARSFSMMLRSGVPLTAALNLVSDAVSNAFMADKIVKMRKNIEKGESLSRVANSSKM 329

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           + P          +    +  G + E L   +       +   K     +E      +  
Sbjct: 330 FTP------LVLQMINVGEETGRVDELLGEAAEFYEREVDYDLKSLTSKIEPLLIMVVAA 383

Query: 135 SLPFCVSTLVYFT 147
            +      +    
Sbjct: 384 MVLVLALGIFTPM 396


>gi|162457503|ref|YP_001619870.1| general secretion pathway protein F [Sorangium cellulosum 'So ce
           56']
 gi|161168085|emb|CAN99390.1| general secretion pathway protein F [Sorangium cellulosum 'So ce
           56']
          Length = 408

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 51/162 (31%), Gaps = 6/162 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+P+ +++  ++ Q   + ++    +V E    G S ++++       P
Sbjct: 74  MTRQLATLIGAGIPLFESLNALIEQVEKESLKKVLTQVREQVREGTSFAKALEAHPSVFP 133

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G L   L  L+  + ++  +  KV A        A I   L 
Sbjct: 134 P-----LYVSMVRAGEASGTLEGVLTRLTVFMENQAKLVGKVTAALAYPALMALIGIGLI 188

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             +   V     G    +      +    +  +        +
Sbjct: 189 SVLMVAVVPNVTGIFASMDQALPWYTAALIGTSAFASSYWWL 230


>gi|313679424|ref|YP_004057163.1| type II secretion system f domain [Oceanithermus profundus DSM
           14977]
 gi|313152139|gb|ADR35990.1| Type II secretion system F domain [Oceanithermus profundus DSM
           14977]
          Length = 399

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 57/157 (36%), Gaps = 6/157 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D    ++     + AG+ +  A+  +  QS    +R   ++V      G  L+E++    
Sbjct: 58  DLVLFMEQFATLIGAGVSLVQALHTLSLQSPHPTLRHAAQQVRSRVEGGAGLAEAMGEFP 117

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
              P          +   ++L G+L E L  ++R L D   ++ K+++       +  I+
Sbjct: 118 EAFPP-----IVVRMVAAAELSGSLEETLRRVARYLDDAFELQQKIRSALTYPFFAITIV 172

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
                 +  +V             +  G  L  +A +
Sbjct: 173 LLAVVALLVVVVPVFQKLYAGAGAELPGITLALLAVS 209


>gi|307720783|ref|YP_003891923.1| Type II secretion system F domain-containing protein [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978876|gb|ADN08911.1| Type II secretion system F domain protein [Sulfurimonas
           autotrophica DSM 16294]
          Length = 415

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 69/197 (35%), Gaps = 20/197 (10%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAV-AVIVGQSSDPVRSEFRRVIETQ 59
           + ++ K++     D    A+  +     AG+ + D++  +    + + ++  F ++ E  
Sbjct: 61  LSNIKKRKIKP--DALIAAIRQLAVMTNAGISIHDSLSEIASATTDEALKFVFSKIAEDI 118

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           + G S+S ++          E+   +  +    +  GNL EAL +L+ +L + +    K 
Sbjct: 119 NAGHSISSAMQNF-----RYELGNLTIAMVELGEKTGNLDEALYSLANMLEEIRANVVKF 173

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG------------V 167
           +      +     +      + + V          L        L+              
Sbjct: 174 KKAMAYPRNVMIAMAIAFTVLISYVVPQFKSIFEELHAQLPLPTLILLKLEYIFNNFGPY 233

Query: 168 AAAFMLIGIMVMRLMIN 184
             A + I   V + +IN
Sbjct: 234 VLAIIAIVFFVFKYLIN 250


>gi|149189069|ref|ZP_01867357.1| MSHA biogenesis protein MshG [Vibrio shilonii AK1]
 gi|148837032|gb|EDL53981.1| MSHA biogenesis protein MshG [Vibrio shilonii AK1]
          Length = 407

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/165 (12%), Positives = 50/165 (30%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
           +        +    +AG+P+  ++  +    ++  ++     V+     G +LS  +   
Sbjct: 66  EVLVIFCRQLFSLTKAGVPLLRSMKGLTQNCTNKQLKYALEEVVNELTNGRNLSSCMQLH 125

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R       S     +    +  G L +AL  L+         + +++A           
Sbjct: 126 PR-----VFSPLFVSMIAVGENTGRLDQALEQLAAYYEQEVETRKRIKAAMRYPTFVLTF 180

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           I +  F ++  V             D      + +  +   +G  
Sbjct: 181 IVAALFVLNIKVIPQFADMFARFGVDLPLPTRILITTSNFFVGYW 225



 Score = 43.2 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/135 (8%), Positives = 35/135 (25%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         +RAG+P++ ++A+      +              +  ++    +  
Sbjct: 268 RAQLSRFSRTFALMLRAGVPLNQSLALSAEAIDNKYLE-----NRIMEMKAAIEAGSTVS 322

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +     +     +    +  G + E L  +S       +   K     +E      +
Sbjct: 323 STAINANIFTPLVIQMISVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLTVV 382

Query: 133 IGSLPFCVSTLVYFT 147
            G +      +    
Sbjct: 383 AGMVLILALGIFLPM 397


>gi|262198000|ref|YP_003269209.1| type II secretion system F domain protein [Haliangium ochraceum DSM
           14365]
 gi|262081347|gb|ACY17316.1| Type II secretion system F domain protein [Haliangium ochraceum DSM
           14365]
          Length = 403

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 48/171 (28%), Gaps = 6/171 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
             D       +   + AGLP+   + ++ GQ+ +         V      G S SES+ +
Sbjct: 60  SRDLLIFTRQLATMIDAGLPLVQCLDILAGQAENKAFAKVLFSVKSGLESGASFSESLRK 119

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +             +    ++GG L   L  L+  +     +K +V+           
Sbjct: 120 HPK-----VFDQLYINLVAAGEVGGILDTILLRLTAYIEKAVKLKRQVKGALTYPIGILV 174

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           I   +   +   V  +     +             V         +    +
Sbjct: 175 IALGVVAVMLGKVIPSFQEMYSSFEGAALPEPTQVVIGISESFRDLWFVWL 225



 Score = 38.6 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 8/130 (6%), Positives = 36/130 (27%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+ + DA+ +    + + V       +           +     +  P 
Sbjct: 270 FTRTLGTLLTSGVAILDALDICSRTAGNRVVQAAIEKVRQAVSEGKDLAAPLGASKVFP- 328

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G + + L  ++    +  ++       ++E     ++   +  
Sbjct: 329 ----SMVVEMISVGEQTGTMDQMLQKIADFYEEEVDVAVAAMTKAIEPLLMGFLGVVVGG 384

Query: 139 CVSTLVYFTS 148
            +  +     
Sbjct: 385 LLIAMYLPVF 394


>gi|163802238|ref|ZP_02196133.1| general secretion pathway protein F [Vibrio sp. AND4]
 gi|159174043|gb|EDP58853.1| general secretion pathway protein F [Vibrio sp. AND4]
          Length = 406

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 56/169 (33%), Gaps = 8/169 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
             +       +   V++G+P+ + +  +  Q+    +RS    V      G  L +S+  
Sbjct: 65  TAELALITRQLSTLVQSGMPLEECLKAVSEQAEKPRIRSMIAAVRSKVTEGYPLGDSLGD 124

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    +  G+L   L  L+  + +R+ M++K+    +       
Sbjct: 125 YP-----HVFDELYLSMVAAGEKSGHLDAVLERLADYVENRQKMRSKLLQAMIYPVVLVV 179

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMV 178
               +   + + V       +  +  +      MLL  +      G+++
Sbjct: 180 FAVGIVTLLLSSVVPKIIEPIIQMGQELPQSTQMLLSASEFVQEWGLII 228


>gi|76802194|ref|YP_327202.1| transmembrane protein (type II secretion system proteins TadC)
           [Natronomonas pharaonis DSM 2160]
 gi|76558059|emb|CAI49645.1| transmembrane protein (homolog 1 to type II secretion system
           proteins TadC) [Natronomonas pharaonis DSM 2160]
          Length = 672

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 55/166 (33%), Gaps = 6/166 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  +     P+ LD +     AG+ V  ++  +       +  E  R+      G ++ +
Sbjct: 453 RLRRLEQAVPDFLDRLASLNEAGISVVSSLDRVRDSDVGALDDEVNRIWRDIEWGATVEQ 512

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           S++R    +    V+   T+I+   +    +   L   +   R    ++ + +   +   
Sbjct: 513 SLNRFESRVKTPSVTRVVTLITNSMRASNEIGPVLRIAAEQARSDLRLRRQRRQEMLTYL 572

Query: 128 ASAWIIGSLPFCVST----LVYFTSPGYMNVLINDPRGHMLLGVAA 169
              ++   +   V      ++  + P      +  P G   +    
Sbjct: 573 VVIYVSFLVFLIVILALDYVLIPSLPD--AEALAGPEGAPAMLGGF 616



 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 51/179 (28%), Gaps = 14/179 (7%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQHL 61
               R  +     P  +       R G+   D +  +           +E   V+    L
Sbjct: 146 RADARQRQIDASLPRMVAFTYALTRGGMSFPDVLRTLSQNEDVFGEGAAEIGVVVRRMDL 205

Query: 62  -GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
             + L  ++  + +  P ++ + FS  +    Q G N+S  L       RD    + K  
Sbjct: 206 FNVDLVTAVQDISQQTPSEQFAQFSENLVSVLQSGQNVSTFLREQYERYRDEAEEQQKEI 265

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
              +   A  ++   +   +  +                 G  +         I  +++
Sbjct: 266 LELLATAAEVYVTVIVAGMLFLVTILLI-----------IGLTVGETLFIMQAIAYVII 313


>gi|229524709|ref|ZP_04414114.1| general secretion pathway protein F [Vibrio cholerae bv. albensis
           VL426]
 gi|229338290|gb|EEO03307.1| general secretion pathway protein F [Vibrio cholerae bv. albensis
           VL426]
          Length = 406

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 64/183 (34%), Gaps = 20/183 (10%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V++G+P+ + +  +  QS    +R+    V      G +LS+S+    
Sbjct: 67  DLALITRQLSTLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G+L   L  L+    +R+ M++K+Q   +       ++
Sbjct: 127 -----HVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPV---VLV 178

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-----------AFMLIGIMVMRLM 182
                 V+ L+    P  +   +   +                      +L+G++++  +
Sbjct: 179 VFAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYL 238

Query: 183 INF 185
           + +
Sbjct: 239 VRW 241


>gi|218703363|ref|YP_002410882.1| type IV pilin biogenesis protein [Escherichia coli UMN026]
 gi|293403176|ref|ZP_06647273.1| type IV pilin biogenesis protein [Escherichia coli FVEC1412]
 gi|298378708|ref|ZP_06988592.1| type IV pilin biogenesis protein [Escherichia coli FVEC1302]
 gi|300900864|ref|ZP_07119002.1| type II secretion system F domain protein [Escherichia coli MS
           198-1]
 gi|218430460|emb|CAR11326.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli UMN026]
 gi|284919883|emb|CBG32938.1| protein transport protein HofC [Escherichia coli 042]
 gi|291430091|gb|EFF03105.1| type IV pilin biogenesis protein [Escherichia coli FVEC1412]
 gi|298281042|gb|EFI22543.1| type IV pilin biogenesis protein [Escherichia coli FVEC1302]
 gi|300355665|gb|EFJ71535.1| type II secretion system F domain protein [Escherichia coli MS
           198-1]
          Length = 400

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 55/182 (30%), Gaps = 22/182 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +   G +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPVLTQGIMTLADFSGEWGWLLVLFGFLLAIANKLLM 235

Query: 180 RL 181
           R 
Sbjct: 236 RR 237


>gi|171915471|ref|ZP_02930941.1| General secretion pathway protein F [Verrucomicrobium spinosum DSM
           4136]
          Length = 434

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 58/176 (32%), Gaps = 12/176 (6%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L K +  +F ++  +        + AGL +  A+  +  +S+  VR    R+ E    G
Sbjct: 91  KLKKAQVIQFTEELCD-------LLAAGLQLEQALHAMENRSTLVVRELAVRLREKVRDG 143

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +  S S+  +               +    +  G+L   L   +  L   + ++A+V   
Sbjct: 144 IPFSVSLQHVS-----PSFGELYCNLVGAGEASGSLPSILNRQAIYLTQMQTLQARVTTA 198

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            +           L     T +       +     D  G  ++ +AA+   I    
Sbjct: 199 LIYPIFIITSGLGLAVMFLTYLLPKLAVLIKSTHGDLPGIAVVLMAASDFFIAWWW 254


>gi|91224971|ref|ZP_01260230.1| general secretion pathway protein F [Vibrio alginolyticus 12G01]
 gi|91190217|gb|EAS76487.1| general secretion pathway protein F [Vibrio alginolyticus 12G01]
          Length = 405

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/176 (11%), Positives = 58/176 (32%), Gaps = 8/176 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
             +       +   V++G+P+ + +  +  Q+    +RS    V      G  L++S + 
Sbjct: 64  TSELALITRQLSTLVQSGMPLEECLRAVSEQAEKPRIRSMLAAVRSKVTEGYPLADSFAD 123

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    +  G+L   L  L+  + +R+ M++K+    +       
Sbjct: 124 YP-----HVFDELYRSMVAAGEKSGHLDTVLERLADYVENRQKMRSKLLQAMIYPVVLVV 178

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMINF 185
               +   +   V       +  +  +       LL  +      G+++  +++  
Sbjct: 179 FAVVIVSFLLATVVPKIIEPIIQMGQELPQSTQFLLAASEFVQDWGLIIFVVLVAL 234


>gi|294142970|ref|YP_003558948.1| general secretion pathway protein F [Shewanella violacea DSS12]
 gi|293329439|dbj|BAJ04170.1| general secretion pathway protein F [Shewanella violacea DSS12]
          Length = 389

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 53/161 (32%), Gaps = 6/161 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            +       I   V AGLP+ +A+  +  Q   D + S    V      G SL++S++  
Sbjct: 49  AELALITRQIATLVAAGLPIEEALKAVGQQCEKDRLASMVMAVRSRVVEGYSLADSMAEF 108

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G+L   L  L+     R+ +K+K+    +       +
Sbjct: 109 P-----HIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKMTQAMIYPIVLTVV 163

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
              +   +   V     G    +         L +A++  +
Sbjct: 164 AIGVIGILLAAVVPQVVGQFEHMGQQLPWTTQLLIASSDFV 204


>gi|323173799|gb|EFZ59428.1| general secretion pathway protein F [Escherichia coli LT-68]
          Length = 407

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 60/176 (34%), Gaps = 8/176 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMINFDV 187
             +   + T V        + L +        L+ ++ A    G+  +  ++ F V
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQASGVYWLAGLLGFLV 238


>gi|257459470|ref|ZP_05624579.1| type II secretion system protein [Campylobacter gracilis RM3268]
 gi|257442895|gb|EEV18029.1| type II secretion system protein [Campylobacter gracilis RM3268]
          Length = 414

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 64/167 (38%), Gaps = 8/167 (4%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           +  +     AG+ + D++  +   + D  ++  F  + +  + GLSL+ES  +    +  
Sbjct: 79  IRQLSVMTNAGISIHDSIKEVARAAEDKTLKEIFSAMNDDLNAGLSLTESTEKFRGQLG- 137

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  GN++E+LA L+ +L++    + K +           ++     
Sbjct: 138 ----DVVVAMVSLGEATGNMAESLAKLAAMLQELWENQRKFKKAMRYPMILMIVMAIAFS 193

Query: 139 CVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVMRLMI 183
            +   V          L  D      +LLG+ +     GI V+  +I
Sbjct: 194 VLMMYVVPKFREIFEDLGADLPLPTRILLGIESTLNNYGIFVLAGII 240


>gi|159040453|ref|YP_001539706.1| type II secretion system protein [Salinispora arenicola CNS-205]
 gi|157919288|gb|ABW00716.1| type II secretion system protein [Salinispora arenicola CNS-205]
          Length = 300

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/180 (10%), Positives = 57/180 (31%), Gaps = 3/180 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             ++R    ++        +      G  +  A+   V  + + ++ E R +      G 
Sbjct: 103 RAEQRAIARVEAVGEWTRRLKDVSATGQGLQAAITGTVATAPEEIQEEVRLLAARLQAGW 162

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQS-QLGGNLSEALANLSRILRDRKNMKAKVQAL 122
               ++      +           + +     G  L + L +++         + +++A 
Sbjct: 163 LARPALLAFADEIADPVCDQVVAALILHLTDRGERLGDVLGSIASAASAEVATRREIEAK 222

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
             + + +   +  +   V       +  Y+      P G +++ V     ++ +  +R M
Sbjct: 223 RTQPRFAVRFLTGMTLAVLAY-GLLNTDYIRP-YGTPTGQLVMAVLGVAFVVLLAWVRAM 280


>gi|158317568|ref|YP_001510076.1| type II secretion system protein [Frankia sp. EAN1pec]
 gi|158112973|gb|ABW15170.1| type II secretion system protein [Frankia sp. EAN1pec]
          Length = 338

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 63/157 (40%), Gaps = 6/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R  + L +FP   +++  +V AG     A+  +   +   + +E R  +   H
Sbjct: 182 LTRAIREREDRMLMEFPTVAELLALAVTAGESAIGALERVSRLTHGELGTELRLALADAH 241

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL +++  +     L  ++ F   ++V  + G  L++ L   +  +R+        +
Sbjct: 242 AGASLVQALEGIATRTSLPPLARFVDGMAVAIERGTPLADVLRAQAVDVREAG------K 295

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
              +EA     I   +P     L       +   L++
Sbjct: 296 RQLLEAGGRKEIAMMIPVVFLILPTTVIFAFYPALVS 332


>gi|315227313|ref|ZP_07869100.1| hypothetical protein HMPREF0620_1581 [Parascardovia denticolens DSM
           10105]
 gi|315119763|gb|EFT82896.1| hypothetical protein HMPREF0620_1581 [Parascardovia denticolens DSM
           10105]
          Length = 307

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 60/181 (33%), Gaps = 6/181 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             + R  K      + +  ++  +  G  + DA      +    V +      +     L
Sbjct: 73  RARLRVKKTDAG--DFIAELISLLHNGSGMVDA----CQEMGGMVFAIPELTDDRMKAVL 126

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           +      R  R    +          + + LG + S+ L  +    +    +  K ++  
Sbjct: 127 ARRCGHGRSDRAYLTRLARQLVASCKLSATLGCSASQCLEAVGVEHKRYLAVADKKRSAL 186

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
              + +  ++  LP  V      TS     VL   P G + L +AA    +G+  ++ ++
Sbjct: 187 SIPRLTVKVLLILPLLVLGGSQLTSARTFQVLFMRPVGWLCLSLAAILYGLGLRWVKRLL 246

Query: 184 N 184
            
Sbjct: 247 R 247


>gi|114321307|ref|YP_742990.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227701|gb|ABI57500.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 312

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 59/144 (40%), Gaps = 3/144 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQH 60
           L   R  +  +    A+ I+   + +G  V  A+ ++     +    +  E    +    
Sbjct: 152 LASARQMRIGEQVTTAVQILRMLLDSGQSVQHALGMVAVEGRELMPDLSRELDLALNRAR 211

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L E +  + R + + E+     ++    + GGN+ E L  L+ ++ DR+  + + +
Sbjct: 212 SGEGLVEVLDGLARDLEVPELDDTVLILKQVVEQGGNVDEPLTRLAELINDRQRTRTQEK 271

Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144
              M AK S  ++  L   +  ++
Sbjct: 272 VTKMSAKMSVVMMLFLFPALLVVL 295


>gi|116255775|ref|YP_771608.1| putative transmembrane pilus component protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115260423|emb|CAK03527.1| putative transmembrane pilus component protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 301

 Score = 61.3 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 66/153 (43%), Gaps = 4/153 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLG 62
             + R  +   +FP  LD++V + +A   + +++ +    +   V   E  + ++   LG
Sbjct: 147 KAQDRKERISREFPYFLDLVVMTQQAQATLPESLRLYAEAAPGTVMSEEIEQTLKDVALG 206

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             + E++ R+ R M  +EV      +      G N  E L   +R LR R   + +    
Sbjct: 207 TGMIEALQRLERRMTAEEVIRVIRAVIQGEVEGSNRVELLREHARDLRFR---RWEKADR 263

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + E   +  ++ ++   VS L+   +P  + ++
Sbjct: 264 ASEKLKAKIVMPAMMIVVSILLLVLAPAIVEMM 296


>gi|50122722|ref|YP_051889.1| type IV pilin biogenesis protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613248|emb|CAG76699.1| protein transport protein [Pectobacterium atrosepticum SCRI1043]
          Length = 401

 Score = 61.3 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 47/140 (33%), Gaps = 9/140 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
            +     +  +   ++AGLP+ DA+ ++  Q      R   R V      G SLSE++  
Sbjct: 58  REQLGELIKQLAALLQAGLPLLDALKLVSEQHDRPGWRCVLRDVRTHVAQGSSLSEALLY 117

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P+              +L G L      L++    +  ++ KV           +
Sbjct: 118 YPHIFPV-----LYRSFIAVGELTGKLDTCCLQLAQQQEKQSRLQQKVIKALRYP---CF 169

Query: 132 IIGSLPFCVSTLVYFTSPGY 151
           ++         ++    P +
Sbjct: 170 VLTIAIVVSMMMLILVLPEF 189


>gi|119773509|ref|YP_926249.1| type IV pilus biogenesis protein PilC [Shewanella amazonensis SB2B]
 gi|119766009|gb|ABL98579.1| type IV pilus biogenesis protein PilC [Shewanella amazonensis SB2B]
          Length = 419

 Score = 61.3 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/172 (8%), Positives = 51/172 (29%), Gaps = 8/172 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       I   + AG+P+   + ++        +R     ++     G+ LS+++    
Sbjct: 80  DIAMVTRQIATMLMAGVPLVTTIEILGKGHEKPKMRELLGTILNDIQAGIPLSDALR--- 136

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G+L      ++      + +K+K++       A   + 
Sbjct: 137 --PHRIYFDDLYVDLVAAGEHSGSLDTVFDRIATYREKAEALKSKIKKAMFYPAAVVVVA 194

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183
            ++   +   V             +      +++ ++          +  ++
Sbjct: 195 IAVTTLLLLFVVPQFEEIFTSFGAELPAFTQLIINISRFLQSSWYFFLTAIV 246


>gi|296120696|ref|YP_003628474.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
 gi|296013036|gb|ADG66275.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
          Length = 406

 Score = 61.3 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 55/171 (32%), Gaps = 6/171 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISR 71
             D  +    +   V AG+ +S A+  +  Q+ S  ++     + E    G   S ++S 
Sbjct: 67  QADIVSMTSQLAVVVDAGVALSVALEGLASQAVSPALKQMLTTIEERVKSGDDFSTALSE 126

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             R             +    +  G+L   L+ L+  L+     + +VQ   M   A   
Sbjct: 127 FPRS-----FDARYVNLVKAGEATGHLGPILSRLAEQLQQESETRQRVQGAMMYPAAMLL 181

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           +       + T V+            +      + +  +  L G     ++
Sbjct: 182 MCVGACIFLLTYVFPKIAPMFAGRGIELPAATRILLTVSNSLTGYWWAWIL 232



 Score = 37.4 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 43/133 (32%), Gaps = 5/133 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                  +  +V AG+PV  A+ +    + +     F+  +E   L ++  +SI++++  
Sbjct: 273 LARIARTLSATVSAGVPVLPALELAAKVAGN---RIFQDAMEDVALHVTSGQSIAQIMAT 329

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                       +    +  G L   L  LS        +  K     +E    A +   
Sbjct: 330 --NPVFPKSVVQMIAAGEQTGQLGTVLGKLSDHYDREVAVSIKSATSLIEPIMVAVMGLV 387

Query: 136 LPFCVSTLVYFTS 148
           +      ++    
Sbjct: 388 IGTIALGMLLPIF 400


>gi|258623360|ref|ZP_05718364.1| MSHA biogenesis protein MshG [Vibrio mimicus VM573]
 gi|262164143|ref|ZP_06031882.1| type II secretory pathway component PulF [Vibrio mimicus VM223]
 gi|258584326|gb|EEW09071.1| MSHA biogenesis protein MshG [Vibrio mimicus VM573]
 gi|262027671|gb|EEY46337.1| type II secretory pathway component PulF [Vibrio mimicus VM223]
          Length = 408

 Score = 61.3 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/165 (10%), Positives = 45/165 (27%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72
           +        +    +AG+P+  ++  +     +    E    V      G SLS      
Sbjct: 67  EVLVIFCRQMYSLTKAGVPLLRSMRGLTQNCHNKQLKEALESVCNELTNGRSLS-----A 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +     S     +    +  G L +AL  L+         + +++            
Sbjct: 122 SMQLHPGIFSPLFVSMIQVGENTGRLDQALLQLANYYEQEVETRKRIKTAMRYPTFVIIF 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           + +  F ++  V        +    D      + +  +   +   
Sbjct: 182 VVTAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYW 226



 Score = 40.1 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/135 (10%), Positives = 41/135 (30%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         + AG+P++ ++A+      +    E R +     +   +S S++ +
Sbjct: 269 RAQLSRFSRTFSLMLSAGVPLNQSLALSAEAIDNKFL-EQRILEMKSQIEAGVSVSVTAV 327

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                ++  +     +    +  G + E L  +S       +   K     +E     ++
Sbjct: 328 ----NVKIFTPLVIQMISVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLVFV 383

Query: 133 IGSLPFCVSTLVYFT 147
              +      +    
Sbjct: 384 AAMVLVLALGIFLPM 398


>gi|255327037|ref|ZP_05368113.1| type II secretion system protein [Rothia mucilaginosa ATCC 25296]
 gi|255296254|gb|EET75595.1| type II secretion system protein [Rothia mucilaginosa ATCC 25296]
          Length = 310

 Score = 61.3 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 59/156 (37%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   + KR  + + +FP   +++  SV AG     A+  I   S   +  EF  ++    
Sbjct: 155 LGEAVTKREKQLVAEFPALAEMMALSVTAGESALAALERICLTSRGELAREFSEILAQTR 214

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+SL  ++        +  +S F   I+V  + G  L++ L   ++ +RD    +    
Sbjct: 215 TGVSLLSALQEFAERTRVPALSRFVEGIAVAIERGTPLADVLRAQAQDVRDNAKRELMET 274

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
           A   E    A ++  +         F     M +  
Sbjct: 275 AGKKEIAMLAPVVFFILPLTVIFAVFPGLSLMRLNF 310


>gi|166713412|ref|ZP_02244619.1| general secretion pathway protein F [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 405

 Score = 61.3 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/183 (10%), Positives = 56/183 (30%), Gaps = 5/183 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ L++K+              +   + AG P+  A+++++         E  R +    
Sbjct: 54  LRMLLRKKPFD-NAALVQFTQQLATLIGAGQPLDRALSILMD----LPEDEKSRRVIGDV 108

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                  +             S     +    + GG++ + L  L+  L   + ++ KV 
Sbjct: 109 RDTVRGGAPLSSALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKVI 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
              +       ++G     +   V          L           ++   ++    ++ 
Sbjct: 169 NALIYPAILLAVVGCALLFLLGYVVPQFAQMYESLDVALPWFTQAVLSVGLLVRDWWLVL 228

Query: 181 LMI 183
           +++
Sbjct: 229 IVV 231


>gi|313681843|ref|YP_004059581.1| type ii secretion system f domain [Sulfuricurvum kujiense DSM
           16994]
 gi|313154703|gb|ADR33381.1| Type II secretion system F domain [Sulfuricurvum kujiense DSM
           16994]
          Length = 415

 Score = 61.3 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 64/179 (35%), Gaps = 8/179 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSL 65
           ++     D+   A+  +     AG+ + D++  I    +   +++    + E  + G SL
Sbjct: 65  RKKKLKQDNLIAAIRQLAVMANAGISIHDSLKEIAEATTDKTLQTVLGTMAEDINAGRSL 124

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S+S           E+   S  +    +  GN++EAL  L+ +L + +    K +     
Sbjct: 125 SQSAHNF-----HYELGNLSLAMIELGEKTGNMAEALHKLADMLEEIRRNIIKFKKAMAY 179

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP--RGHMLLGVAAAFMLIGIMVMRLM 182
            +     +      + + V          L         +LL +   F   G+ V+  +
Sbjct: 180 PRNVMIAMAIAFTVLISYVVPQFKTIFEQLGATLPMPTKILLFLEHLFNTYGLYVLAAI 238


>gi|149197154|ref|ZP_01874206.1| General secretion pathway protein F [Lentisphaera araneosa
           HTCC2155]
 gi|149139700|gb|EDM28101.1| General secretion pathway protein F [Lentisphaera araneosa
           HTCC2155]
          Length = 397

 Score = 61.3 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 51/158 (32%), Gaps = 4/158 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                + +   ++AG+ +  ++ +I     +     F   +               ++  
Sbjct: 61  LEEFTENLSSLLKAGVTLERSLEIIEESLENEHGRAFVGHLRQGLH----EGQKFSVLVG 116

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
              +      T + +  +  G LS  L  L   L+++K  ++ V + S+      +I  S
Sbjct: 117 DRPEFFPKIYTHLVMVGEESGTLSAVLERLHIYLQEKKETRSYVISASVYPLIVGFISLS 176

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           +   +   +             +P G   +    +F L
Sbjct: 177 VLVFMLAFIVPQFAQTFAKAKTEPSGLAAILFDVSFFL 214


>gi|156972925|ref|YP_001443832.1| general secretion pathway protein F [Vibrio harveyi ATCC BAA-1116]
 gi|156524519|gb|ABU69605.1| hypothetical protein VIBHAR_00603 [Vibrio harveyi ATCC BAA-1116]
          Length = 406

 Score = 61.3 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 56/169 (33%), Gaps = 8/169 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
             +       +   V++G+P+ + +  +  Q+    +RS    V      G  L++S+  
Sbjct: 65  TAELALITRQLSTLVQSGMPLEECLKAVSEQAEKPRIRSMIAAVRSKVTEGYPLADSLGD 124

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    +  G+L   L  L+  + +R+ M++K+    +       
Sbjct: 125 YP-----HVFDELYLSMVAAGEKSGHLDTVLERLADYVENRQKMRSKLLQAMIYPVVLVV 179

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMV 178
               +   + + V       +  +  +       LL  +      G+++
Sbjct: 180 FAVGIVSLLLSSVVPKIIEPIIQMGQELPQSTQFLLSASEFVQEWGLII 228


>gi|307353960|ref|YP_003895011.1| type II secretion system F domain-containing protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307157193|gb|ADN36573.1| Type II secretion system F domain protein [Methanoplanus
           petrolearius DSM 11571]
          Length = 336

 Score = 61.3 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/148 (11%), Positives = 50/148 (33%), Gaps = 3/148 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           RT       PN    +     +G+ + +A+  +       +    +++       +    
Sbjct: 115 RTRNIEVALPNFFRDVAGMNESGMTLPNAIHTVSDGDYGTLTPYIKKLDNEVSWNIPFIN 174

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +I R    +          +I+  SQ GG++SE L   +    +  ++  + +   +   
Sbjct: 175 AIHRFGERLGTPLAKRSVDLIAKASQAGGDVSEVLRAAANDSYEFVSLATERRNNML--- 231

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
               I+         ++   +  +++ +
Sbjct: 232 IYIVIVLVSFLVFLLVIAIMTSTFLDTM 259


>gi|261415454|ref|YP_003249137.1| Type II secretion system F domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371910|gb|ACX74655.1| Type II secretion system F domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302326068|gb|ADL25269.1| pilus assembly protein PilC [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 400

 Score = 61.3 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 70/186 (37%), Gaps = 18/186 (9%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
            +D      +      AGLP+   + ++     +  +++   ++ ++ + G SL++++++
Sbjct: 59  TEDITRFTRMFSSMCSAGLPMLQCLNILEAQCENPELKNVVHKLTQSINGGSSLADALAQ 118

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +             +    + GG L   LA L+  L + + +K KV+           
Sbjct: 119 HPK-----VFDSLYCNMVAAGEAGGILEGILARLAETLENNQRLKRKVKKALTYPIMVII 173

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA--------AFMLIGIMVM---- 179
           +   +   + T V  T       L  +      + +          AFM IG++++    
Sbjct: 174 VGIVVVIALMTFVVPTFAEQFAALDAELPAPTQVVMNISDFIRNNGAFMFIGVIIIIFAY 233

Query: 180 RLMINF 185
           ++++  
Sbjct: 234 KMIMRI 239



 Score = 36.3 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/140 (11%), Positives = 45/140 (32%), Gaps = 9/140 (6%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           +           +   + AG+ V DA+ V+   + +       +V+E     +S+  +  
Sbjct: 260 QIKSATAGFARTLGTLLNAGVSVMDALKVVATTAGN-------KVVEKAIYKISIGIAGG 312

Query: 71  RMVRYMPLQE--VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           + +     +          ++   +  GNL   L  L+    +  +         +E   
Sbjct: 313 KSIAEPMEEVGIFPPMVIQMTGVGEKTGNLGGMLLKLADFYDEEVDAAVDAVVSMIEPLI 372

Query: 129 SAWIIGSLPFCVSTLVYFTS 148
             ++ G++   +  +     
Sbjct: 373 IVFLGGAVGGLLIAMYMPMF 392


>gi|84386331|ref|ZP_00989359.1| Type II secretory pathway, component EpsF [Vibrio splendidus 12B01]
 gi|84378755|gb|EAP95610.1| Type II secretory pathway, component EpsF [Vibrio splendidus 12B01]
          Length = 406

 Score = 61.3 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 51/178 (28%), Gaps = 15/178 (8%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           D       I   V++G+P+ + +  +  QS  P        + ++               
Sbjct: 67  DLALITRQISTLVQSGMPLEECLKAVAEQSEKPRIRTMLLAVRSKVT----EGYSLADSL 122

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                        +    +  G+L   L  L+    +R+ M++K+    +          
Sbjct: 123 SDYPHIFDELFRAMVAAGEKSGHLDAVLERLADYAENRQKMRSKLLQAMIYPIVLVVFAV 182

Query: 135 SLPFCVSTLVYFTS-----------PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++   +   V               P     L+         G+    + IG++V+  
Sbjct: 183 TIVSFLLATVVPKIVEPIIQMGQELPQSTQFLLASSEFIQNWGIQLLVLTIGVIVLVK 240


>gi|325920916|ref|ZP_08182809.1| Type II secretory pathway component [Xanthomonas gardneri ATCC
           19865]
 gi|325548598|gb|EGD19559.1| Type II secretory pathway component [Xanthomonas gardneri ATCC
           19865]
          Length = 405

 Score = 61.3 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/183 (10%), Positives = 56/183 (30%), Gaps = 5/183 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ L++K+              +   + AG P+  A+++++         E  R +    
Sbjct: 54  LRMLLRKKPFD-NAALVQFTQQLSTLIGAGQPLDRALSILMD----LPEDEKSRRVIGDV 108

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                  +             S     +    + GG++ + L  L+  L   + ++ KV 
Sbjct: 109 RDTVRGGAPLSSALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKVI 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
              +       ++G     +   V          L           ++   ++    V+ 
Sbjct: 169 NALIYPAILLAVVGCALLFLLGYVVPQFAQMYESLDVALPWFTQAVLSVGLLVRDWWVVL 228

Query: 181 LMI 183
           +++
Sbjct: 229 IVV 231


>gi|325262322|ref|ZP_08129059.1| putative general secretion pathway protein F [Clostridium sp. D5]
 gi|324032154|gb|EGB93432.1| putative general secretion pathway protein F [Clostridium sp. D5]
          Length = 399

 Score = 61.3 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 59/193 (30%), Gaps = 18/193 (9%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQHLGL 63
           K R         +    +   V AG+ +  A+ +I          R  +  ++     G+
Sbjct: 49  KNRKQFKPKVLADFSRQLSTLVGAGVTLVRALNIIANGEAIKPNERQVYEDMVRQIRQGI 108

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           SLSE++                  +   ++  GNL      ++ +      +  K+ +  
Sbjct: 109 SLSEAMEA-----QNGAFPPLMIYMYRSAESSGNLELVSMQMALMFEKEHRLNGKISSSL 163

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL----------GVAAAFML 173
           +  K    +I  +   ++  V        + +   P    +L             A   L
Sbjct: 164 VYPKILGVMIIGVVMVLTKFVMPQLQELFDTMETLPLPTRILNGISDFMQSYWFLAIAAL 223

Query: 174 IGIMVMRL-MINF 185
           +GI V    ++  
Sbjct: 224 LGIWVGWKALLRI 236


>gi|269964605|ref|ZP_06178844.1| General secretion pathway protein F [Vibrio alginolyticus 40B]
 gi|269830732|gb|EEZ84952.1| General secretion pathway protein F [Vibrio alginolyticus 40B]
          Length = 405

 Score = 61.3 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/176 (11%), Positives = 58/176 (32%), Gaps = 8/176 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
             +       +   V++G+P+ + +  +  Q+    +RS    V      G  L++S + 
Sbjct: 64  TSELALITRQLSTLVQSGMPLEECLRAVSEQAEKPRIRSMLAAVRSKVTEGYPLADSFAD 123

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    +  G+L   L  L+  + +R+ M++K+    +       
Sbjct: 124 YP-----HVFDELYRSMVAAGEKSGHLDTVLERLADYVENRQKMRSKLLQAMIYPVVLVV 178

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMINF 185
               +   +   V       +  +  +       LL  +      G+++  +++  
Sbjct: 179 FAVVIVSFLLATVVPKIIEPIIQMGQELPQSTQFLLAASEFVQDWGLIIFVVLVAL 234


>gi|221066735|ref|ZP_03542840.1| type II secretion system protein [Comamonas testosteroni KF-1]
 gi|220711758|gb|EED67126.1| type II secretion system protein [Comamonas testosteroni KF-1]
          Length = 338

 Score = 61.3 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 69/158 (43%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           + +   +R  + +++ P  +D++      GL +  ++ ++  +       + SE     +
Sbjct: 174 VSYKSSQRREQVVEELPLFVDLLRLLQGVGLSIDQSLQILSQEFGSVLPVLSSELAMANQ 233

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S  +S+ R+      Q+++    ++    + GG +   L +    LR+++  + 
Sbjct: 234 LYASGRSRDQSLQRLTHLSDDQDMTAVVNLLVQVDRHGGAVQGPLQDFGIRLREKRQARF 293

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           K +  ++  K +  ++ +L   +  +V    PG+M V+
Sbjct: 294 KEKIGAITVKMTGVMVLTLLPAL--MVITAGPGFMAVI 329


>gi|121593088|ref|YP_984984.1| general secretion pathway protein F [Acidovorax sp. JS42]
 gi|222109858|ref|YP_002552122.1| general secretion pathway protein f [Acidovorax ebreus TPSY]
 gi|120605168|gb|ABM40908.1| general secretion pathway protein F [Acidovorax sp. JS42]
 gi|221729302|gb|ACM32122.1| general secretion pathway protein F [Acidovorax ebreus TPSY]
          Length = 409

 Score = 61.3 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 50/163 (30%), Gaps = 4/163 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                  +   V +GLP+  A+  +  ++ D  +      +  +    S           
Sbjct: 72  LGVWTRQLAGLVGSGLPLERALTALAEEADDERQRHLLAALRAEVNAGS----TFARALA 127

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
              +E S     +    +  G L+E L +L+  L  R+ ++AK+   ++       I   
Sbjct: 128 QHPREFSDIYCAVIGAGESSGGLAEVLDSLADDLEQRQALRAKLIGAALYPAIVTVIAIV 187

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +   +   V                   +  +A + ++     
Sbjct: 188 IVLFLVGYVVPQVASVFAGTKRALPFLTVAMLALSDVVRNYGW 230



 Score = 37.0 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 39/130 (30%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       ++          +     G  L+ ++++  R+  
Sbjct: 278 FAGTLAMLAGAGVPILKALQAAAETLNNRALRADALDALVLVREGAPLASALAQKKRFPG 337

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                    + +   +  G L   L   +  L      +A   A  +E      + G + 
Sbjct: 338 ------LVAMFARLGEQTGQLPTMLQRAATQLGTEVQRRAMQLATVLEPLLIVAMGGIVM 391

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 392 LIVLAVLMPI 401


>gi|83338437|gb|ABC11888.1| PilC [Aliivibrio fischeri]
          Length = 412

 Score = 61.3 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/175 (13%), Positives = 59/175 (33%), Gaps = 17/175 (9%)

Query: 1   MKHLIKKRTAKFLD--------DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSE 51
           +K + K+  + F          D       +   + +G+PV  ++ +I    +   ++S 
Sbjct: 51  IKKIKKRSISSFEKMKHAVKRKDITLFTRQLSTMLASGVPVVQSLQLIAENNTKAEMKSI 110

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111
             +V  +   G  LS+++S             F   +    +  G+L++A + L+     
Sbjct: 111 LHQVCLSIEAGTQLSKALS-----TSCSHFDSFYIDLIATGEETGSLAQAFSRLAEYREK 165

Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
              +++KV    +       +          ++ F  P + N+            
Sbjct: 166 SDALRSKVIKAMIYPS---MVFLVAITVTILMLTFVIPEFENIFKGFGAELPWFT 217



 Score = 41.6 bits (96), Expect = 0.043,   Method: Composition-based stats.
 Identities = 12/135 (8%), Positives = 36/135 (26%), Gaps = 5/135 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                    +  S  +GLP+  ++      + +    E    ++             R  
Sbjct: 276 AAIAKFSRTLATSFSSGLPILHSLQTTSKTAGNLYYQEAILSVQQHTAAGMPLYIAMRHT 335

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
              P          + +  +  G L + L  ++ +  +  +         +E     ++ 
Sbjct: 336 EAFP-----EMVLQMVMIGEESGKLDDMLNKIAHVYEEDVDNTVDNLGKILEPFIIVFLG 390

Query: 134 GSLPFCVSTLVYFTS 148
             +   V ++     
Sbjct: 391 TMIGGLVVSMYLPIF 405


>gi|258627006|ref|ZP_05721804.1| MSHA biogenesis protein MshG [Vibrio mimicus VM603]
 gi|258580680|gb|EEW05631.1| MSHA biogenesis protein MshG [Vibrio mimicus VM603]
          Length = 408

 Score = 61.3 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/165 (10%), Positives = 45/165 (27%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72
           +        +    +AG+P+  ++  +     +    E    V      G SLS      
Sbjct: 67  EVLVIFCRQMYSLTKAGVPLLRSMRGLTQNCHNKQLKEALESVCNELTNGRSLS-----A 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +     S     +    +  G L +AL  L+         + +++            
Sbjct: 122 SMQLHPGIFSPLFVSMIQVGENTGRLDQALLQLANYYEQEVETRKRIKTAMRYPTFVIIF 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           + +  F ++  V        +    D      + +  +   +   
Sbjct: 182 VVTAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYW 226



 Score = 40.1 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/135 (10%), Positives = 41/135 (30%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         + AG+P++ ++A+      +    E R +     +   +S S++ +
Sbjct: 269 RAQLSRFSRTFSLMLSAGVPLNQSLALSAEAIDNKFL-EQRILEMKSQIEAGVSVSVTAV 327

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                ++  +     +    +  G + E L  +S       +   K     +E     ++
Sbjct: 328 ----NVKIFTPLVIQMISVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLVFV 383

Query: 133 IGSLPFCVSTLVYFT 147
              +      +    
Sbjct: 384 AAMVLVLALGIFLPM 398


>gi|257790636|ref|YP_003181242.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|257474533|gb|ACV54853.1| type II secretion system protein [Eggerthella lenta DSM 2243]
          Length = 288

 Score = 61.3 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 56/143 (39%), Gaps = 1/143 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
              +   +     P+ALD++   + AG     A+A +  +    +   F RV +      
Sbjct: 137 RRAEWRDELDRQLPDALDLMAICISAGSSFEGALASVGTRMDGAIAEAFARVAKE-AAYS 195

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S SE++  +     +  ++FF+  +    + G +L + +   ++ +R  + ++       
Sbjct: 196 SRSEALLGLADRAQVNSITFFTASLVQAERAGSSLVDIIRMQAQSVRTERRLRVDDMTNK 255

Query: 124 MEAKASAWIIGSLPFCVSTLVYF 146
           +  K    ++  +   +  L+  
Sbjct: 256 LSTKMLFPMLLLMLPSIIMLMLA 278


>gi|194364325|ref|YP_002026935.1| type II secretion system protein [Stenotrophomonas maltophilia
           R551-3]
 gi|194347129|gb|ACF50252.1| type II secretion system protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 406

 Score = 61.3 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 41/142 (28%), Gaps = 4/142 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                    +   + AG P+  A+++++         E  R   T    +    +     
Sbjct: 67  AALLQFTQQLATLLGAGQPLDRALSILL----GLPEDERSRRAITDIRDVVRGGAPLSTA 122

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +    + GG+L + L  L+  L   + ++ KV    +       ++
Sbjct: 123 LERQHGLFSRLYVNMVRAGEAGGSLHDTLQRLADYLERSRALQGKVINALVYPAILLVVV 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155
           G     +   V          L
Sbjct: 183 GGALLFLLGYVVPQFAQMYESL 204


>gi|317484813|ref|ZP_07943709.1| bacterial type II secretion system F domain-containing protein
           [Bilophila wadsworthia 3_1_6]
 gi|316923943|gb|EFV45133.1| bacterial type II secretion system F domain-containing protein
           [Bilophila wadsworthia 3_1_6]
          Length = 413

 Score = 61.3 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 54/179 (30%), Gaps = 21/179 (11%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AGLP+ +A+A I              R+ +    G  L++ ++       
Sbjct: 79  MARQLATLLHAGLPLDEALASICAHDDASRMQGIVSRLRDRIMAGGDLADGLAEFPN--- 135

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               S     +    +  G L   +   +  +  +  +  KVQA         ++   + 
Sbjct: 136 --VFSSTFVTMVRAGEASGTLELVIERFAEHIEQQVALVRKVQATLAYPILMLFVGIGVV 193

Query: 138 FCVSTLVYFTSPGYMNVLINDPR---------------GHMLLGVAAAFMLIGIMVMRL 181
             + T V        + +                    G  ++ +    ++IG+  MR 
Sbjct: 194 IFLLTFVIPKVTQIFSDMGRALPVPTQILLAVSDGIRSGWWIILLLVLCIMIGVWRMRR 252


>gi|302205373|gb|ADL09715.1| type II secretion system membrane protein [Corynebacterium
           pseudotuberculosis C231]
          Length = 251

 Score = 61.3 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 67/182 (36%), Gaps = 1/182 (0%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K  ++    +  ++   AL  +   +RAG+  S A+  +     +    +          
Sbjct: 67  KRRLEASQRREQEEISTALGSLAGDLRAGVEASVALENVAQNLPESALKDTLMAASRSSR 126

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
               + +  +  R + +  +   +    +  + G  L+  L      L +      + QA
Sbjct: 127 IGGSASAYWQQ-RALAIHGIEKITHAWRLSERYGIALAPLLEKNRASLDEDLRHAERTQA 185

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
               AKA+A+I+ +LPF    L        +  L +   G +LL +    + +G +  + 
Sbjct: 186 ALQGAKATAYILTALPFVGILLGRGMGVNALGFLFHTRIGAVLLILGTLLVCVGNLWSQA 245

Query: 182 MI 183
           ++
Sbjct: 246 IM 247


>gi|197335879|ref|YP_002156984.1| type IV pilus assembly protein TapC [Vibrio fischeri MJ11]
 gi|197317369|gb|ACH66816.1| type IV pilus assembly protein TapC [Vibrio fischeri MJ11]
          Length = 412

 Score = 61.3 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 59/175 (33%), Gaps = 17/175 (9%)

Query: 1   MKHLIKKRTAKFLD--------DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSE 51
           +K + K+  + F          D       +   + +G+PV  ++ +I    +   ++S 
Sbjct: 51  IKKIKKRSISSFEKMKHAVKRKDITLFTRQLSTMLASGVPVVQSLQLIAENNTKAEMKSI 110

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111
             +V  +   G  LS+++S             F   +    +  G+L++A A L+     
Sbjct: 111 LHQVCLSIEAGTQLSKALSS-----SCSHFDSFYIDLIATGEETGSLAQAFARLAEYREK 165

Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
              +++KV    +       +          ++ F  P + N+            
Sbjct: 166 SDALRSKVIKAMIYPS---MVFLVAITVTILMLTFVIPEFENIFKGFGAELPWFT 217



 Score = 41.6 bits (96), Expect = 0.043,   Method: Composition-based stats.
 Identities = 12/135 (8%), Positives = 36/135 (26%), Gaps = 5/135 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                    +  S  +GLP+  ++      + +    E    ++             R  
Sbjct: 276 AAIAKFSRTLATSFSSGLPILHSLQTTSKTAGNLYYQEAILSVQQHTAAGMPLYIAMRHT 335

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
              P          + +  +  G L + L  ++ +  +  +         +E     ++ 
Sbjct: 336 EAFP-----EMVLQMVMIGEESGKLDDMLNKIAHVYEEDVDNTVDNLGKILEPFIIVFLG 390

Query: 134 GSLPFCVSTLVYFTS 148
             +   V ++     
Sbjct: 391 TMIGGLVVSMYLPIF 405


>gi|260767302|ref|ZP_05876242.1| MSHA biogenesis protein MshG [Vibrio furnissii CIP 102972]
 gi|260617709|gb|EEX42888.1| MSHA biogenesis protein MshG [Vibrio furnissii CIP 102972]
          Length = 407

 Score = 61.3 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/168 (11%), Positives = 47/168 (27%), Gaps = 6/168 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
           +        +    +AG+P+  ++  +    ++  ++     V      G  LS      
Sbjct: 66  EVLVIFCRQLYSLTKAGVPLLRSMKGLTQNCANKQLQHALEEVCSELTNGRGLS-----A 120

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              M     S     +    +  G L EAL  L+         + +++            
Sbjct: 121 SMQMHAGVFSPLFVSMINVGENTGRLDEALLQLANYYEQELETRKRIKTAMRYPTFVVSF 180

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           I    F ++  V        N    +      + +  +   +   ++ 
Sbjct: 181 IVIAMFILNVKVIPQFASMFNRFGVELPLPTRILIGMSNFFVNYWMVM 228



 Score = 44.0 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/135 (9%), Positives = 35/135 (25%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         +RAG+P++ ++A+      +              +  ++    S  
Sbjct: 268 RAQLSRFSRTFSLMLRAGVPLNQSLALAAEALDNKFLEARLL-----EMKAAIEAGSSIS 322

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +     +     +    +  G + E L  +S       +   K     +E      +
Sbjct: 323 ATAINTGIFTPLVIQMIAVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLVIV 382

Query: 133 IGSLPFCVSTLVYFT 147
            G +      +    
Sbjct: 383 AGMVLVLALGIFLPM 397


>gi|289582786|ref|YP_003481252.1| type II secretion system protein F [Natrialba magadii ATCC 43099]
 gi|289532339|gb|ADD06690.1| Type II secretion system F domain protein [Natrialba magadii ATCC
           43099]
          Length = 684

 Score = 61.3 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 14/155 (9%), Positives = 55/155 (35%), Gaps = 3/155 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +     +      L  +  +   GL + ++   +   ++  +  EF  +    + G SL 
Sbjct: 460 RHRNTVVKTLSEDLRKLSSANDTGLTLLESFQSVADTTNGKLAREFELMHTKVNYGTSLK 519

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++        +  ++  + +I+   +    +++ L   +    +  +++ + ++ +   
Sbjct: 520 AALIEFNNKYHIPRLARTTRLITEAQEASNQITDVLRTAASASENHDDIERERKSRT--- 576

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           +    II      V  ++      +++ +     G
Sbjct: 577 RMQVVIIIMTFLTVLAVIAILKTQFIDTMAGLEAG 611



 Score = 54.4 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/179 (12%), Positives = 58/179 (32%), Gaps = 3/179 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHL 61
               R  +      +++  +      GL   + +  +     +   V  EF+ +++    
Sbjct: 145 RASARKREINMLLTDSVSFMYALSVGGLNQLEIIEAMAQADDTYGEVAKEFQSIVKETEY 204

Query: 62  G-LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
             +    +I       P  E+S F T +      GG++   L +           + ++ 
Sbjct: 205 FDVDYRTAIRNQAIETPSDELSQFLTDMLSIVNSGGDMESFLEDKKEKHMRTAKQEQEIT 264

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             ++E     ++  SL   +  ++           + +   +M +        IG +V+
Sbjct: 265 LETLELFGEMYMTLSLFPLLLIIIMVVMQMIPQADVTNEMLYMTVYGLIPLTGIGFLVL 323


>gi|83338451|gb|ABC11891.1| PilC [Aliivibrio fischeri]
          Length = 412

 Score = 61.3 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 59/175 (33%), Gaps = 17/175 (9%)

Query: 1   MKHLIKKRTAKFLD--------DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSE 51
           +K + K+  + F          D       +   + +G+PV  ++ +I    +   ++S 
Sbjct: 51  IKKIKKRSISSFEKMKHAVKRKDITLFTRQLSTMLASGVPVVQSLQLIAENNTKAEMKSI 110

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111
             +V  +   G  LS+++S             F   +    +  G+L++A A L+     
Sbjct: 111 LHQVCLSIEAGTQLSKALSS-----SCSHFDSFYIDLIATGEDTGSLAQAFARLAEYREK 165

Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
              +++KV    +       +          ++ F  P + N+            
Sbjct: 166 SDALRSKVIKAMIYPS---MVFLVAITVTILMLTFVIPEFENIFKGFGAELPWFT 217



 Score = 42.0 bits (97), Expect = 0.043,   Method: Composition-based stats.
 Identities = 12/135 (8%), Positives = 36/135 (26%), Gaps = 5/135 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                    +  S  +GLP+  ++      + +    E    ++             R  
Sbjct: 276 AAIAKFSRTLATSFSSGLPILHSLQTTSKTAGNLYYQEAILSVQQHTAAGMPLYIAMRHT 335

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
              P          + +  +  G L + L  ++ +  +  +         +E     ++ 
Sbjct: 336 EAFP-----EMVLQMVMIGEESGKLDDMLNKIAHVYEEDVDNTVDNLGKILEPFIIVFLG 390

Query: 134 GSLPFCVSTLVYFTS 148
             +   V ++     
Sbjct: 391 TMIGGLVVSMYLPIF 405


>gi|269959417|ref|ZP_06173800.1| General secretion pathway protein F [Vibrio harveyi 1DA3]
 gi|269835854|gb|EEZ89930.1| General secretion pathway protein F [Vibrio harveyi 1DA3]
          Length = 406

 Score = 61.3 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 53/152 (34%), Gaps = 9/152 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
             +       +   V++G+P+ + +  +  Q+    +RS    V      G  L++S+  
Sbjct: 65  TAELALITRQLSTLVQSGMPLEECLKAVSEQAEKPRIRSMIAAVRSKVTEGYPLADSLGD 124

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    +  G+L   L  L+  + +R+ M++K+    +       
Sbjct: 125 YP-----HVFDELYLSMVAAGEKSGHLDTVLERLADYVENRQKMRSKLLQAMIYPV---V 176

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
           ++      VS L+    P  +  +I   +   
Sbjct: 177 LVVFAVGIVSLLLSSVVPKIIEPIIQMGQELP 208


>gi|21230136|ref|NP_636053.1| general secretion pathway protein F [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769873|ref|YP_244635.1| general secretion pathway protein F [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|83303434|sp|P31744|GSPF_XANCP RecName: Full=General secretion pathway protein F
 gi|21111668|gb|AAM39977.1| general secretion pathway protein F [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575205|gb|AAY50615.1| general secretion pathway protein F [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 405

 Score = 61.3 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 59/183 (32%), Gaps = 5/183 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ L++K+              +   + AG P+  A+++++    D       RVI    
Sbjct: 54  LRMLLRKKPFD-NAALVQFTQQLATLIGAGQPLDRALSILMDLPEDDKSR---RVIADIR 109

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
             +    +   +         S     +    + GG++ + L  L+  L   + +K KV 
Sbjct: 110 DTV-RGGAPLSVALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALKGKVI 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
              +       ++G     +   V          L           ++   ++    ++ 
Sbjct: 169 NALIYPAILLAVVGCALLFLLGYVVPQFAQMYESLDVALPWFTQAVLSVGLLVRDWWLVL 228

Query: 181 LMI 183
           ++I
Sbjct: 229 VVI 231


>gi|190572738|ref|YP_001970583.1| putative general secretion pathway protein F [Stenotrophomonas
           maltophilia K279a]
 gi|190010660|emb|CAQ44269.1| putative general secretion pathway protein F [Stenotrophomonas
           maltophilia K279a]
          Length = 406

 Score = 61.3 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 41/142 (28%), Gaps = 4/142 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                    +   + AG P+  A+++++         E  R   T    +    +     
Sbjct: 67  AALLQFTQQLATLLGAGQPLDRALSILL----GLPEDERSRRAITDIRDVVRGGAPLSTA 122

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +    + GG+L E L  L+  L   + ++ KV    +       ++
Sbjct: 123 LERQHGLFSRLYVNMVRAGEAGGSLHETLQRLADYLERSRALQGKVINALVYPAILLVVV 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155
           G     +   V          L
Sbjct: 183 GGALLFLLGYVVPQFAQMYESL 204


>gi|260771888|ref|ZP_05880806.1| type 4 fimbrial assembly protein PilC [Vibrio metschnikovii CIP
           69.14]
 gi|260613180|gb|EEX38381.1| type 4 fimbrial assembly protein PilC [Vibrio metschnikovii CIP
           69.14]
          Length = 408

 Score = 61.3 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/187 (9%), Positives = 54/187 (28%), Gaps = 17/187 (9%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSES 68
                +       +   +  G+P+  A+ ++        ++S   ++ +    G  +S++
Sbjct: 64  RATNKEITLLTRQLSTMLATGVPIVQALKLVADSHQKAEMKSIITQISKGVAAGTPISKA 123

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           +                  +    +  GNL+E    L+      + ++AKV    +    
Sbjct: 124 MRTASSLFDP-----LYVDLVQTGEQSGNLAEVFERLATYREKTEQLRAKVIKALIYPAM 178

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM-----------LLGVAAAFMLIGIM 177
              +   + + + T++             +                   +    + I I+
Sbjct: 179 VMLVALGVSYLMLTMIIPEFELMFQGFGAELPWFTQQVLKLSHLVQAYSLVFVLLCIAIV 238

Query: 178 VMRLMIN 184
               +I 
Sbjct: 239 FGFKLIR 245



 Score = 35.5 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/131 (9%), Positives = 38/131 (29%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +  S  AG+P+ D++      + +       ++V      G+ +  ++        
Sbjct: 277 FSRTLATSFAAGIPILDSLKTTAKTAGNLHFETAIQQVYRDTAAGMPMYIAMRNTGA--- 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     + +  +  G L + L  ++ I     +         +E     ++   + 
Sbjct: 334 ---FPELVLQMVMIGEESGKLDDMLNKVATIYEFDVDNTVDNLGKILEPLIIVFLGTVVG 390

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 391 GLVVAMYLPIF 401


>gi|225375108|ref|ZP_03752329.1| hypothetical protein ROSEINA2194_00732 [Roseburia inulinivorans DSM
           16841]
 gi|225213055|gb|EEG95409.1| hypothetical protein ROSEINA2194_00732 [Roseburia inulinivorans DSM
           16841]
          Length = 203

 Score = 61.3 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 61/194 (31%), Gaps = 21/194 (10%)

Query: 4   LIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           + KK+       +     D +   V AG+P+ + ++++   + +   +E   VI      
Sbjct: 1   MKKKKQQMLGNLEIAAFCDQLSMIVSAGIPIYEGISILQEDAPEEETAEILSVISN---- 56

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            SL    S             +   +    +L G L E L  L+   +  ++++  ++  
Sbjct: 57  -SLDHGSSFCDALRETNVFPKYVLDMIGIGELAGKLEEVLNALTGYYKREESIQNSIKNA 115

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG---------------HMLLGV 167
                    ++ ++   +   V          L +D  G                 ++ +
Sbjct: 116 VTYPLLMIAMMLAVILVLIAKVLPVFHQIYMELGSDLTGFAGAMMRFSDALNQYLFVIVI 175

Query: 168 AAAFMLIGIMVMRL 181
                  GI ++  
Sbjct: 176 VLIAAAAGIFLISK 189


>gi|260771971|ref|ZP_05880888.1| general secretion pathway protein F [Vibrio metschnikovii CIP
           69.14]
 gi|260612838|gb|EEX38040.1| general secretion pathway protein F [Vibrio metschnikovii CIP
           69.14]
          Length = 406

 Score = 61.3 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 57/184 (30%), Gaps = 22/184 (11%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V++G+P+ + +  +  QS    +R+    V      G +L++S++   
Sbjct: 67  DLALLTRQLSTLVQSGMPLEECLRAVSEQSEKPRIRNMLAAVRAKVTEGYTLADSLADYP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G+L   L  L+    +R+ M++K+    +         
Sbjct: 127 -----HIFDDLFRSMVAAGEKSGHLDAILERLADYAENRQKMRSKLMQALLYPIVLVVFA 181

Query: 134 GSLPFCVSTLVYF-----------TSPGYMNVLINDP-----RGHMLLGVAAAFMLIGIM 177
             +   +   V               P     L++        G  LL      +     
Sbjct: 182 VGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLSSSDFVQQWGLTLLASVLVSIYFIKW 241

Query: 178 VMRL 181
           ++R 
Sbjct: 242 LLRK 245


>gi|83338372|gb|ABC11879.1| PilC [Aliivibrio fischeri]
          Length = 412

 Score = 61.3 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 58/169 (34%), Gaps = 14/169 (8%)

Query: 1   MKHLIKKRTAKFLD--------DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSE 51
           +K + K+  + F          D       +   + +G+PV  ++ +I    +   ++S 
Sbjct: 51  IKKIKKRSISSFEKMKHAVKRKDITLFTRQLSTMLASGVPVVQSLQLIAENNTKAEMKSI 110

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111
             +V  +   G  LS+++S             F   +    +  G+L++A A L+     
Sbjct: 111 LHQVCLSIEAGTQLSKALSS-----SCSHFDSFYIDLIATGEETGSLAQAFARLAEYREK 165

Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
              +++KV    +       +  ++   + T V             +  
Sbjct: 166 SDALRSKVIKAMIYPTMVFLVAITVTILMLTFVIPEFENIFKGFGAELP 214



 Score = 42.0 bits (97), Expect = 0.041,   Method: Composition-based stats.
 Identities = 11/135 (8%), Positives = 36/135 (26%), Gaps = 5/135 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                    +  S  +GLP+  ++      + +    E    ++             R  
Sbjct: 276 AAIAKFSRTLATSFSSGLPILHSLQTTSKTAGNLYYQEAILSVQQHTAAGMPLYIAMR-- 333

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +        + +  +  G L + L  ++ +  +  +         +E     ++ 
Sbjct: 334 ---HTEVFPEMVLQMVMIGEESGKLDDMLNKIAHVYEEDVDNTVDNLGKILEPFIIVFLG 390

Query: 134 GSLPFCVSTLVYFTS 148
             +   V ++     
Sbjct: 391 TMIGGLVVSMYLPIF 405


>gi|330831362|ref|YP_004394314.1| GspF family protein [Aeromonas veronii B565]
 gi|328806498|gb|AEB51697.1| GspF family protein [Aeromonas veronii B565]
          Length = 406

 Score = 61.3 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 52/167 (31%), Gaps = 6/167 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
           D+       +    RAG+P+  A+A +   +   P++     + E    G  LS S+   
Sbjct: 65  DELVIFSRQMYALTRAGIPILRAIAGLEEGTHSKPLKRALHSLGEDLGNGRPLSSSMQAH 124

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +       S     I    +  G L EA   L+         + +++            
Sbjct: 125 PK-----VFSSLFVAIIHVGENTGQLEEAFLQLANYFELELETRKRIKTAMRYPSFVMIA 179

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           IG     ++ +V     G       +      + +A +   +    +
Sbjct: 180 IGIAMVILNIMVIPVFAGMFAKFGVELPLATRILLATSHFFVNYWWL 226



 Score = 39.7 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/132 (9%), Positives = 37/132 (28%), Gaps = 5/132 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                      ++AG+P++ A+ ++     +   +     +     G+   ES+ R    
Sbjct: 270 LARFARSFSMMLKAGVPLNTALTLVADAVDNAYMAGR---VRDMRAGIERGESLLRTASS 326

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
             L   +     +    +  G + + L   +       +   K     +E      +   
Sbjct: 327 SGL--FTPLVMQMIAVGEETGQVDDLLHEAAEYYEREVDYDLKSLTARIEPILIGIVAVM 384

Query: 136 LPFCVSTLVYFT 147
           +      +    
Sbjct: 385 VLILALGIFTPM 396


>gi|218782977|ref|YP_002434295.1| general secretion pathway protein F [Desulfatibacillum alkenivorans
           AK-01]
 gi|218764361|gb|ACL06827.1| General secretion pathway protein F [Desulfatibacillum alkenivorans
           AK-01]
          Length = 408

 Score = 61.3 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 59/161 (36%), Gaps = 6/161 (3%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
              +   V AGLP+  A+  ++ QS    ++     V +    G SL++++S   +    
Sbjct: 75  TRQLSTLVGAGLPIVSALESLIPQSPHPVLQKVLAHVKDDIVEGKSLADALSSHPK---- 130

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
              S     +    +  G +   LA LS +    +N K K++A          +   +  
Sbjct: 131 -VFSPLYVNMVRAGEASGAMEIVLARLSDLTERNENTKGKIRAALAYPVIMVLVAIVVLT 189

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            +   V  +     + +         + +AA+  L+   V+
Sbjct: 190 ALMVKVVPSIVSLFDDVQQALPLPTRVLIAASDFLVDYWVV 230


>gi|110834174|ref|YP_693033.1| general secretion pathway protein F [Alcanivorax borkumensis SK2]
 gi|110647285|emb|CAL16761.1| General secretion pathway protein F [Alcanivorax borkumensis SK2]
          Length = 405

 Score = 61.3 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 52/155 (33%), Gaps = 9/155 (5%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
              +   +++GLPV  A++ +  Q ++D +      V      G SL+ S     R  P 
Sbjct: 71  TRQLATLLKSGLPVEQALSAVSKQAANDRIERIMLAVRAKVREGYSLAHSFESFPRAFP- 129

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                         +  G+L + L  L+  L  R +    V    +      +I+     
Sbjct: 130 ----EMYRATVAAGEQSGHLEQVLEQLADYLETRHDTGRSVAQAMIYPA---FIMVFASI 182

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
            +  ++ F  P  + V     +   LL      M 
Sbjct: 183 VIMLMMTFVVPKLVAVFEGRDQALPLLTRIVMAMS 217


>gi|284989266|ref|YP_003407820.1| Type II secretion system F domain-containing protein
           [Geodermatophilus obscurus DSM 43160]
 gi|284062511|gb|ADB73449.1| Type II secretion system F domain protein [Geodermatophilus
           obscurus DSM 43160]
          Length = 300

 Score = 61.3 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 60/171 (35%), Gaps = 3/171 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +     +      + AG  +   +      +  P+++E   +          S ++    
Sbjct: 106 EALQEWVRRTSDVLAAGGGLEQTLIRSAHTAPAPIQAEVATLAARLQARWPASRALLAFA 165

Query: 74  RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + + ++  G  L+  L  L+  L +   M+ KV+A   + +A+A  
Sbjct: 166 DDLDDAAGDLVVAALLLGAELRGPGLARVLTELAGSLTEEVTMRRKVEADRAKPRANARW 225

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           +  +    + L       Y+        G M+L   AA ++  ++ MR + 
Sbjct: 226 LLLITVAAAGLAALNG-DYLTP-YGTALGQMVLAAIAALIVGCLLWMRRLT 274


>gi|83338397|gb|ABC11882.1| PilC [Aliivibrio fischeri]
          Length = 412

 Score = 61.3 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 59/175 (33%), Gaps = 17/175 (9%)

Query: 1   MKHLIKKRTAKFLD--------DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSE 51
           +K + K+  + F          D       +   + +G+PV  ++ +I    +   ++S 
Sbjct: 51  IKKIKKRSISSFEKMKHAVKRKDITLFTRQLSTMLASGVPVVQSLQLIAENNTKAEMKSI 110

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111
             +V  +   G  LS+++S             F   +    +  G+L++A A L+     
Sbjct: 111 LHQVCLSIEAGTQLSKALS-----TSCSHFDSFYIDLIATGEETGSLAQAFARLAEYREK 165

Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
              +++KV    +       +          ++ F  P + N+            
Sbjct: 166 SDALRSKVIKAMIYPT---MVFLVAITVTILMLTFVIPEFENIFKGFGAELPWFT 217



 Score = 42.0 bits (97), Expect = 0.039,   Method: Composition-based stats.
 Identities = 11/135 (8%), Positives = 36/135 (26%), Gaps = 5/135 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                    +  S  +GLP+  ++      + +    E    ++             R  
Sbjct: 276 AAIAKFSRTLATSFSSGLPILHSLQTTSKTAGNLYYQEAILSVQQHTAAGMPLYIAMR-- 333

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +        + +  +  G L + L  ++ +  +  +         +E     ++ 
Sbjct: 334 ---HTEVFPEMVLQMVMIGEESGKLDDMLNKIAHVYEEDVDNTVDNLGKILEPFIIVFLG 390

Query: 134 GSLPFCVSTLVYFTS 148
             +   V ++     
Sbjct: 391 TMIGGLVVSMYLPIF 405


>gi|188993089|ref|YP_001905099.1| Type II secretory pathway component [Xanthomonas campestris pv.
           campestris str. B100]
 gi|73916935|gb|AAC27376.3| XpsF [Xanthomonas campestris]
 gi|167734849|emb|CAP53060.1| Type II secretory pathway component [Xanthomonas campestris pv.
           campestris]
          Length = 405

 Score = 61.3 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 59/184 (32%), Gaps = 7/184 (3%)

Query: 1   MKHLIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           ++ L+  R   F +         +   + AG P+  A+++++    D       RVI   
Sbjct: 54  LRMLL--RKKPFDNASLVQFTQQLATLIGAGQPLDRALSILMDLPEDDKSR---RVIADI 108

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
              +    +   +         S     +    + GG++ + L  L+  L   + +K KV
Sbjct: 109 RDTV-RGGAPLSVALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALKGKV 167

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
               +       ++G     +   V          L           ++   ++    ++
Sbjct: 168 INALIYPAILLAVVGCALLFLLGYVVPQFAQMYESLDVALPWFTQAVLSVGLLVRDWWLV 227

Query: 180 RLMI 183
            ++I
Sbjct: 228 LVVI 231


>gi|225376647|ref|ZP_03753868.1| hypothetical protein ROSEINA2194_02289 [Roseburia inulinivorans DSM
           16841]
 gi|225211530|gb|EEG93884.1| hypothetical protein ROSEINA2194_02289 [Roseburia inulinivorans DSM
           16841]
          Length = 344

 Score = 61.3 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 51/152 (33%), Gaps = 1/152 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  ++ KR      +FP  +  +     AG+ VS A  +        +  E +RV+    
Sbjct: 191 VNAVVSKRQEDIEREFPQVISKMTLLTVAGMEVSQAWRLASASGEGTLYKEMKRVLVDFD 250

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKV 119
             +S  E+ S+ +        +  +T I      G + +      L+          A+ 
Sbjct: 251 NNVSPVEAYSKFISRCSNTYTTKLATAIIQNISKGNSEIVTLFRQLNDESWLEHKHNARR 310

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
               +++K     +      +  ++     G+
Sbjct: 311 MGEKIQSKLLLPTMLMFGGIIILIIVPVMSGF 342


>gi|281356958|ref|ZP_06243448.1| Type II secretion system F domain protein [Victivallis vadensis
           ATCC BAA-548]
 gi|281316516|gb|EFB00540.1| Type II secretion system F domain protein [Victivallis vadensis
           ATCC BAA-548]
          Length = 292

 Score = 61.3 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 63/157 (40%), Gaps = 2/157 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQ 59
           +   IK R    +   PN LD+++ SV +G  +  A+  ++  +  DP+  E  R     
Sbjct: 133 LSMRIKARHLSIMKALPNVLDLLMLSVESGRDIVSALRDILARRRMDPLGEELTRAFRQM 192

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR-DRKNMKAK 118
            LG   ++++  M + +   +++     I    +LG ++ + L     + R  R ++  K
Sbjct: 193 QLGRKRADALRDMAQRVRQPDLTTTVNAIVQAEELGVSIVQLLRVQGDMQRNKRFSLAEK 252

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +   +        +   LP  +  +    +   + + 
Sbjct: 253 LANEAAVKIIFPVVFCILPSVLIVIFGPLALQVLQMF 289


>gi|315181302|gb|ADT88216.1| Type II secretory pathway, component PulF [Vibrio furnissii NCTC
           11218]
          Length = 407

 Score = 61.3 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/168 (11%), Positives = 47/168 (27%), Gaps = 6/168 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
           +        +    +AG+P+  ++  +    ++  ++     V      G  LS      
Sbjct: 66  EVLVIFCRQLYSLTKAGVPLLRSMKGLTQNCANKQLQHALEEVCSELTNGRGLS-----A 120

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              M     S     +    +  G L EAL  L+         + +++            
Sbjct: 121 SMQMHAGVFSPLFVSMINVGENTGRLDEALLQLANYYEQELETRKRIKTAMRYPTFVVSF 180

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           I    F ++  V        N    +      + +  +   +   ++ 
Sbjct: 181 IVIAMFILNVKVIPQFASMFNRFGVELPLPTRILIGMSNFFVNYWMVM 228



 Score = 44.0 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/135 (9%), Positives = 35/135 (25%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         +RAG+P++ ++A+      +              +  ++    S  
Sbjct: 268 RAQLSRFSRTFSLMLRAGVPLNQSLALAAEALDNKFLEARLL-----EMKAAIEAGSSIS 322

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +     +     +    +  G + E L  +S       +   K     +E      +
Sbjct: 323 ATAINTGIFTPLVIQMIAVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLVIV 382

Query: 133 IGSLPFCVSTLVYFT 147
            G +      +    
Sbjct: 383 AGMVLVLALGIFLPM 397


>gi|148977860|ref|ZP_01814415.1| MSHA biogenesis protein MshG [Vibrionales bacterium SWAT-3]
 gi|145962929|gb|EDK28200.1| MSHA biogenesis protein MshG [Vibrionales bacterium SWAT-3]
          Length = 407

 Score = 61.3 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 17/165 (10%), Positives = 46/165 (27%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
           +        +    +AG+P+  ++  +     +  +++    V+     G  L+      
Sbjct: 67  EVLVLFCRQLYSLTKAGVPLLRSMKGLTQNCENKQLKAALEEVVAELTNGRGLA-----A 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              M  +  S     +    +  G L +AL  L+         + +++            
Sbjct: 122 SMQMHPKVFSPLFVSMIGVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVISF 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           I    F ++  V             D      + +  +   +   
Sbjct: 182 ILIAMFILNIKVIPQFSSMFARFGVDLPLPTRILIGMSEFFVNYW 226



 Score = 40.9 bits (94), Expect = 0.080,   Method: Composition-based stats.
 Identities = 11/132 (8%), Positives = 38/132 (28%), Gaps = 5/132 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                      ++AG+P++ ++A+      +         +  Q +  ++    +     
Sbjct: 272 LSRFSRTFALMLKAGVPLNQSLALSAEALDNRFLE-----LRVQAMKSAIEAGSTVSSTA 326

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
           +  +  +     +    +  G + E L  ++       +   K     +E      + G 
Sbjct: 327 INSEIFTPLVIQMISVGEETGRIDELLLEVADYYDREVDYDLKTLTARIEPILLTIVAGM 386

Query: 136 LPFCVSTLVYFT 147
           +      +    
Sbjct: 387 VLILALGIFLPM 398


>gi|83338417|gb|ABC11885.1| PilC [Aliivibrio fischeri]
          Length = 412

 Score = 61.3 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 58/175 (33%), Gaps = 17/175 (9%)

Query: 1   MKHLIKKRTAKFLD--------DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSE 51
           +K + K+  + F          D       +   + +G+PV  ++ +I    +   ++S 
Sbjct: 51  IKKIKKRSISSFEKMKHAVKRKDITLFTRQLSTMLASGVPVIQSLQLIAENNTKAEMKSI 110

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111
             +V  +   G  LS+++S             F   +    +  G+L++A A L+     
Sbjct: 111 LHQVCLSIEAGTQLSKALSS-----SCSHFDSFYIDLIATGEETGSLAQAFARLAEYREK 165

Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
              +++KV            +          ++ F  P + N+            
Sbjct: 166 SDALRSKVIKAMXYPT---MVFLVAITVTILMLTFVIPEFENIFKGFGAELPWFT 217



 Score = 42.0 bits (97), Expect = 0.039,   Method: Composition-based stats.
 Identities = 11/135 (8%), Positives = 36/135 (26%), Gaps = 5/135 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                    +  S  +GLP+  ++      + +    E    ++             R  
Sbjct: 276 AAIAKFSRTLATSFSSGLPILHSLQTTSKTAGNLYYQEAILSVQQHTAAGMPLYIAMR-- 333

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +        + +  +  G L + L  ++ +  +  +         +E     ++ 
Sbjct: 334 ---HTEVFPEMVLQMVMIGEESGKLDDMLNKIAHVYEEDVDNTVDNLGKILEPFIIVFLG 390

Query: 134 GSLPFCVSTLVYFTS 148
             +   V ++     
Sbjct: 391 TMIGGLVVSMYLPIF 405


>gi|308176986|ref|YP_003916392.1| type II secretion system protein F [Arthrobacter arilaitensis
           Re117]
 gi|307744449|emb|CBT75421.1| putative type II secretion system protein F [Arthrobacter
           arilaitensis Re117]
          Length = 313

 Score = 60.9 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 66/150 (44%), Gaps = 2/150 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I +R  K L  FP   +++  +V AG   + A+  I       +  EF + +   H
Sbjct: 158 LGEQINRRARKILTQFPTVAEVLALTVGAGESTTGAIERISRICHGVIGDEFTKTLNDIH 217

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + +++  M   M +  ++ F   I V ++ G  L++ L + ++ +RD    K ++ 
Sbjct: 218 AGTPMVQAMQHMSDRMQVGAMTRFVDAIVVATERGTPLAQVLRDQAQDVRD--ASKRELM 275

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150
            ++ + + S  +         T+V+   PG
Sbjct: 276 EVAGKREISMLVPVVFGILPLTIVFAVFPG 305


>gi|90020786|ref|YP_526613.1| MSHA biogenesis protein MshG [Saccharophagus degradans 2-40]
 gi|89950386|gb|ABD80401.1| type II secretion system protein [Saccharophagus degradans 2-40]
          Length = 406

 Score = 60.9 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/166 (10%), Positives = 49/166 (29%), Gaps = 6/166 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISR 71
            +D       +    ++G+P++  +  +      +  R     V E    G+ LS+++  
Sbjct: 66  TNDLIMFCRQMYTITKSGIPLTRGIRGLGASIRHEHFRDVLGDVAERLEAGVGLSQAMRH 125

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +       +     +    +  GNL E    +   L   +  + +++  +      + 
Sbjct: 126 HPK-----VFNSLFVSMVAVGETSGNLDEIFRQIGFYLERDEETRKRIKQATRYPTFVSI 180

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
            I      V+  V             D      + +  +   +   
Sbjct: 181 AIVLAMAAVNIWVVPAFADMFAKFDADLPIVTRILIFTSNAFVNYW 226



 Score = 38.9 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 40/131 (30%), Gaps = 5/131 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
                 +RAG+PV+ A+A+      +P  +   + I       S+    S +  ++  + 
Sbjct: 277 RSFGLMLRAGVPVNQALALCAAAIDNPYIAAKIQQIRQ-----SIERGESLLRTHLQAEM 331

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
            +     +    +  G +   L  ++       +   K     +E      +   +    
Sbjct: 332 FTPLVLQMIAVGEESGQVEALLTEVAEFYEREVDYDLKTLTDRIEPILIIVMAAFVALLA 391

Query: 141 STLVYFTSPGY 151
             +       Y
Sbjct: 392 VGIFLPMWSMY 402


>gi|399799|sp|P31705|GSPF_PECCC RecName: Full=General secretion pathway protein F; AltName:
           Full=Pectic enzymes secretion protein outF
 gi|42188|emb|CAA49647.1| outF [Pectobacterium carotovorum]
          Length = 408

 Score = 60.9 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 54/169 (31%), Gaps = 9/169 (5%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLS 64
           +++      D       +   V A +P+ +A+  +  QS    +      V      G S
Sbjct: 60  RRKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHS 119

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L++++                  +    +  G+L   L  L+     R+ M++++Q   +
Sbjct: 120 LADAMKCFP-----GSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMI 174

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
                  +       VS L+    P  +   I+  +   L       M 
Sbjct: 175 YP---CVLTVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMS 220


>gi|289663712|ref|ZP_06485293.1| general secretion pathway protein F [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289668614|ref|ZP_06489689.1| general secretion pathway protein F [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 405

 Score = 60.9 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/177 (10%), Positives = 51/177 (28%), Gaps = 5/177 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ L++K+              +   + AG P+  A+++++         E  R +    
Sbjct: 54  LRMLLRKKPFD-NAALVQFTQQLATLIGAGQPLDRALSILMD----LPEDEKSRRVIGDV 108

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                  +             S     +    + GG++ + L  L+  L   + ++ KV 
Sbjct: 109 RDTVRGGAPLSSALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKVI 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
              +       ++G     +   V          L           ++   ++    
Sbjct: 169 NALIYPAILLAVVGCALLFLLGYVVPQFAQMYESLDVALPWFTQAVLSVGLLVRDWW 225


>gi|332528441|ref|ZP_08404433.1| type II secretion system protein [Hylemonella gracilis ATCC 19624]
 gi|332042120|gb|EGI78454.1| type II secretion system protein [Hylemonella gracilis ATCC 19624]
          Length = 328

 Score = 60.9 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 46/154 (29%), Gaps = 7/154 (4%)

Query: 26  SVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFF 84
             +AG+P+     ++   Q++  + +    +      G  LS++  R  R+         
Sbjct: 1   MTKAGVPLLRGFDIVARGQANASLTALLLNIRTDVEAGTPLSKAFGRYPRH-----FDRL 55

Query: 85  STVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144
              +    +  G L   L  L+  L     ++++++A  M           +   +   V
Sbjct: 56  YCSLVEAGETAGVLDAMLERLALHLEKALALRSRIRAALMYPAVVVATATLVVSIIMVFV 115

Query: 145 YFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                        D  G   + +      +    
Sbjct: 116 IPAFHEVFRSFGADLPGPTRVLIGM-SEFMARWW 148


>gi|308272049|emb|CBX28657.1| hypothetical protein N47_G39810 [uncultured Desulfobacterium sp.]
          Length = 397

 Score = 60.9 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 17/168 (10%), Positives = 45/168 (26%), Gaps = 10/168 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            +       +   + AGLP+  ++ ++   + +         I           S     
Sbjct: 60  AEIHAFTAQLSVLLNAGLPLDKSLHILSRITENGRMK----TIVESLQKSVREGSSFSDA 115

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +        +    +  G L   L  LS  L   + ++  + +  +       ++
Sbjct: 116 LLKHPKVFPRLYINMIRAGEASGVLHIVLEQLSDFLESSRELREHIISAMIYPA---ILV 172

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI---MV 178
            +    +  L+ F  P +  +         L       +  G+     
Sbjct: 173 ITGGITLVILMTFVLPKFSAIFTELGGALPLPTRILISVSNGLKESWW 220



 Score = 36.3 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   +++G+P+  A+        + V S     +                 + +P 
Sbjct: 266 FCRTLGMLLKSGVPLIQALNNAKEVIGNQVISTALGAVSKGAKEGKGIAGPLSEAKVLPP 325

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                 +  +    +  G L   L  ++ +         K     +E      +   + F
Sbjct: 326 -----LALSMIKVGEDTGQLDGMLLKVAVVYEKSLRETVKRFVSLLEPVMILAMGLFIGF 380

Query: 139 CVSTLVYFTS 148
            V +++    
Sbjct: 381 IVISMLVGIF 390


>gi|298490992|ref|YP_003721169.1| Type II secretion system F domain-containing protein ['Nostoc
           azollae' 0708]
 gi|298232910|gb|ADI64046.1| Type II secretion system F domain protein ['Nostoc azollae' 0708]
          Length = 407

 Score = 60.9 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/168 (11%), Positives = 60/168 (35%), Gaps = 6/168 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                   V AG+ +   +A++  Q +   ++     +      G++LS+S+ +      
Sbjct: 72  FSRQFAALVNAGVAIVRGLAILGEQCNNPKLKQALIEIGGDVQTGVNLSDSMGKHPDCFD 131

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    ++GG L E L  L+++L D   ++ ++++         +I  ++ 
Sbjct: 132 G-----LYVSMVQSGEIGGVLDEVLNRLAKLLEDMARLQNQIKSAMSYPLVVGFIATAIF 186

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             ++  +          +  +        +  + +L     + ++  F
Sbjct: 187 VGMTVFLIPIFANIFKDIGIELPALTQFLMTCSEILRSYWSLVIIAGF 234


>gi|160931310|ref|ZP_02078710.1| hypothetical protein CLOLEP_00147 [Clostridium leptum DSM 753]
 gi|156869694|gb|EDO63066.1| hypothetical protein CLOLEP_00147 [Clostridium leptum DSM 753]
          Length = 288

 Score = 60.9 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 62/173 (35%), Gaps = 1/173 (0%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
            ++     +  I   +  G  +  AV +   ++   +     +++      +   E+  R
Sbjct: 104 LMEALDRWVRQIAAVLPQGRDIITAVRISRPRAPKMIAESVDQLVSRLDGRMEPREAFQR 163

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +   E       +++ +      S  L  ++  ++ R  +  +V+A   + + S  
Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            I  +   +   +      ++  L   P G +L+ VA    +I ++ M  M  
Sbjct: 224 QITLVTIAMFGALLVIGRAFLAPL-ATPPGQVLVAVAIVMYVIALVQMYRMAR 275


>gi|56476318|ref|YP_157907.1| general secretion pathway protein F [Aromatoleum aromaticum EbN1]
 gi|56312361|emb|CAI07006.1| general secretion pathway protein F [Aromatoleum aromaticum EbN1]
          Length = 438

 Score = 60.9 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 56/162 (34%), Gaps = 6/162 (3%)

Query: 23  IVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +RAGLP+  A+  ++       + +    ++++   G   S+++    R       
Sbjct: 108 LAVMLRAGLPLDRALKVMVSMSQRPSITALLDDLLDSVKSGKGFSQALQPHQRLFG---- 163

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F   +    + GG L E L+ L+  L   + ++  V +  +       +     F + 
Sbjct: 164 -EFYINMVRSGEAGGQLGEVLSRLAEHLERTRALRESVVSALIYPAILVLVAAVSVFLML 222

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             V        N +         + V A  ++     +  ++
Sbjct: 223 AFVVPQFESLFNDMGEALPLPTRIIVGAGHLVADWGWLMALV 264


>gi|323935156|gb|EGB31523.1| bacterial type II secretion system protein F containing protein
           [Escherichia coli E1520]
          Length = 400

 Score = 60.9 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 54/182 (29%), Gaps = 22/182 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + +  +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCVELARQQKAQHQLTDKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +   G +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGFLLAIANKLLM 235

Query: 180 RL 181
           R 
Sbjct: 236 RR 237


>gi|260778157|ref|ZP_05887050.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606170|gb|EEX32455.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio coralliilyticus ATCC BAA-450]
          Length = 284

 Score = 60.9 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 61/142 (42%), Gaps = 3/142 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           ++  + +   +     P+ALD++V  V +GL + +   V+  +    S  +  E+     
Sbjct: 123 LEWRVNQIRQEISKVAPDALDLMVVCVASGLTLENTFRVVGEEMTSVSPALAREWALTAT 182

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +  S  +++  + + + L +++     +S   Q G  LS+AL+ ++   R  + +  
Sbjct: 183 EMSVLDSPQQALQNLDQRLELPDINNMVVTMSQALQFGTPLSQALSLIASDSRQYQLLDL 242

Query: 118 KVQALSMEAKASAWIIGSLPFC 139
           +     + AK S  ++  +   
Sbjct: 243 EEWVGKIPAKMSFPLVVFIMLP 264


>gi|319782178|ref|YP_004141654.1| type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168066|gb|ADV11604.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 316

 Score = 60.9 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 60/149 (40%), Gaps = 3/149 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +      +   +   FP+ +D+++    AG+ +  AV  +  +       +  +   +  
Sbjct: 157 LDRFENSQKQIYRRAFPDFMDMMITCADAGMSLEGAVERVSHEMAATHKWLGIQLSIMNL 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G  L E++  +   + L E    + +     +LG +L++AL   S  +R ++ + A
Sbjct: 217 QLRAGKPLREALRELADRIGLDEARALAVLFRQSEELGTSLTDALRVYSAEMRGQRILSA 276

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF 146
           + +A S+  K    +   +   V  ++  
Sbjct: 277 EERANSLPVKMMIPLGLCIFPVVMMVIML 305


>gi|91228621|ref|ZP_01262538.1| type IV pilin biogenesis protein PilC [Vibrio alginolyticus 12G01]
 gi|91187804|gb|EAS74119.1| type IV pilin biogenesis protein PilC [Vibrio alginolyticus 12G01]
          Length = 407

 Score = 60.9 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 50/161 (31%), Gaps = 12/161 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           + H +K R      D       I   +  G+P+  A+ ++        ++S    V    
Sbjct: 60  LSHRVKAR------DITVFTRQISTMLITGVPLVQALKLVSENHKKAEMKSILMSVTRAV 113

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G  +S+++     +            +    +  GNL+E    L+      + ++AKV
Sbjct: 114 EAGTPMSKAMRTASEHFDPLYTD-----LIATGEQSGNLAEVFERLATYREKNEQLRAKV 168

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
               +       +   + F + T V             D  
Sbjct: 169 IKALIYPAMVVLVALGVSFIMLTKVIPEFEKMFVGFGADLP 209



 Score = 35.1 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/136 (9%), Positives = 37/136 (27%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72
                    +  S  AG+P+  ++      S +         V      G+ +  ++   
Sbjct: 271 AAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNLHYQLAIEEVYRDTAAGMPMYVAMRN- 329

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          + +  +  G L + L  ++ I     +      +  +E     ++
Sbjct: 330 -----CNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFL 384

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V+ +     
Sbjct: 385 GIVVGGLVTAMYLPIF 400


>gi|256389283|ref|YP_003110847.1| integral membrane protein [Catenulispora acidiphila DSM 44928]
 gi|256355509|gb|ACU69006.1| integral membrane protein [Catenulispora acidiphila DSM 44928]
          Length = 270

 Score = 60.9 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 8/183 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +  +++R  + ++        I   + AG    +A+      +   +       +     
Sbjct: 90  RLAVERRQTEIIE----LCVTICSELHAGREAREALRDAAVGACPDLAVH----LVGPLG 141

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                 ++ R     P +E           ++ G  ++ A+  LS  LR  +  + ++ A
Sbjct: 142 TGDDVVTVLRTAAGTPGREALAALAACWQVAEGGAGMTAAIGELSDGLRAERAQRRELDA 201

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
                + SA ++  LP     +        + +L++   G   L +  AF+L G+M M  
Sbjct: 202 ELAGIRTSARLLAMLPVVGLIIGSGMGLSPIPMLLHTGVGETCLVLGIAFVLGGVMWMDR 261

Query: 182 MIN 184
           +  
Sbjct: 262 IAR 264


>gi|147677471|ref|YP_001211686.1| type II secretory pathway, component PulF [Pelotomaculum
           thermopropionicum SI]
 gi|146273568|dbj|BAF59317.1| type II secretory pathway, component PulF [Pelotomaculum
           thermopropionicum SI]
          Length = 404

 Score = 60.9 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 55/165 (33%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRM 72
            +       +   ++AG+P+  A+ ++  Q+    +R     +      G + SE++   
Sbjct: 68  RNMSILCRQLATMLQAGVPLLQALHILTRQTGHKGLRDSLSVITRLLEEGRTFSEALRMF 127

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P          ++   ++ G L  AL NL+       N+  K+++  +        
Sbjct: 128 PAIYPG-----IMVSMAEAGEVTGRLDYALENLAGHFEREHNISEKIKSAMVYPAVLVAT 182

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
             +    V  LV  +    ++ L  +        ++ +       
Sbjct: 183 GIAAVSIVFILVVPSFKAMLDTLGVELPAVTRAVMSVSAFCAANW 227


>gi|302329927|gb|ADL20121.1| Putative type II secretion system protein [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275611|gb|ADO25510.1| Putative type II secretion system protein [Corynebacterium
           pseudotuberculosis I19]
          Length = 266

 Score = 60.9 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 67/182 (36%), Gaps = 1/182 (0%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K  ++    +  ++   AL  +   +RAG+  S A+  +     +    +          
Sbjct: 82  KRRLEASQRREQEEISTALGSLAGDLRAGVEASVALENVAQNLPESALKDTLMAASRSSR 141

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
               + +  +  R + +  +   +    +  + G  L+  L      L +      + QA
Sbjct: 142 IGGSASAYWQQ-RALAIHGIEKITHAWRLSERYGIALAPLLEKNRASLDEDLRHAERTQA 200

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
               AKA+A+I+ +LPF    L        +  L +   G +LL +    + +G +  + 
Sbjct: 201 ALQGAKATAYILTALPFVGILLGRGMGVNALGFLFHTRIGAVLLILGTLLVCVGNLWSQA 260

Query: 182 MI 183
           ++
Sbjct: 261 IM 262


>gi|148976302|ref|ZP_01813026.1| Flp pilus assembly protein TadC [Vibrionales bacterium SWAT-3]
 gi|145964396|gb|EDK29651.1| Flp pilus assembly protein TadC [Vibrionales bacterium SWAT-3]
          Length = 283

 Score = 60.9 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 62/155 (40%), Gaps = 6/155 (3%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSLSE 67
           +     P+A+D++V  V +GL +      +  +    S  +  E+        +  S   
Sbjct: 132 QISRVVPDAIDLMVICVASGLTLESVFRCVGEEMRSISPALSREWLLTATEISVLDSPQT 191

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +++ + + + L +++   T ++   Q G  L++AL  ++   R    ++ +     + AK
Sbjct: 192 ALNNLDKRVQLPDINNVVTTMNQALQYGTPLADALKLIASDSRQYYFLELEEWVGKIPAK 251

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162
            S  ++  +   V  ++       M  L+    G 
Sbjct: 252 MSFPLVVFIMLPVVAIII---APIMLNLMQTLGGI 283


>gi|294086084|ref|YP_003552844.1| type II secretion system PilC [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292665659|gb|ADE40760.1| Type II Secretion System PilC [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 409

 Score = 60.9 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 60/149 (40%), Gaps = 6/149 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
            +       I   +RAGLP+ +A+ ++ GQSS+  ++     +I   + G SLS+S    
Sbjct: 67  KEIMIFTKKIATMMRAGLPIVEAMILVAGQSSNANMKRVSTDMITKLNNGASLSQSFRHH 126

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R+            +    ++ G L   L  L  +L  ++ +KA +++          I
Sbjct: 127 KRH-----FDAVYLNMVEAGEISGKLDTFLDRLVEMLEKQQAIKAGIKSALFYPVTLVVI 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
             S+ + + T V  T       L  +  G
Sbjct: 182 TISISYFMLTNVVPTFQDMYEGLGAELPG 210


>gi|258510316|ref|YP_003183750.1| Type II secretion system F domain-containing protein
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257477042|gb|ACV57361.1| Type II secretion system F domain protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 412

 Score = 60.9 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 57/162 (35%), Gaps = 9/162 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
            +DF          VRAG+P+  A+ V+  Q    P++     V      G +L ES++ 
Sbjct: 67  SEDFVPFCRQFATLVRAGVPLVPALQVLEEQLRKGPLKKAVAEVAAKVEGGTALWESLAE 126

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P          +    +  G+L E L + +R    ++   +K+++  M       
Sbjct: 127 YPKVFPP-----MFVQMVRAGEASGSLEEVLESTARFEEGQRETISKIKSALMYPAL--- 178

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           +          L+    P +++V  +      L      F  
Sbjct: 179 VSVMSVLVAGFLMINVIPSFVSVFASMHVTLPLPTRIVLFSA 220


>gi|198283215|ref|YP_002219536.1| type II secretion system protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218665636|ref|YP_002425446.1| type IV pilus biogenesis protein PilC [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247736|gb|ACH83329.1| type II secretion system protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218517849|gb|ACK78435.1| type IV pilus biogenesis protein PilC [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 419

 Score = 60.9 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/174 (10%), Positives = 57/174 (32%), Gaps = 6/174 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
                  +  +   + AG+P+  +  ++V  +S   ++   + +++    G SLS++++ 
Sbjct: 75  EAQLVVMVRQLSTMINAGVPIVQSFELLVSATSGAGMKKLLKGILKHLKEGESLSQAMAH 134

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +             +    + GG L   L  L+        +  KV++      A   
Sbjct: 135 FPK-----YFDRLFVSLVAAGEQGGILDTILLRLAEYREKTLALNKKVKSAMFYPAAIIT 189

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           ++  +   +   V        +           + +  +  +     + +++  
Sbjct: 190 VMVVVVVILMIFVIPVFSQLFSSFGATLPLLTQVVINISDWMKSHWYIVVLVPI 243



 Score = 35.9 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/130 (8%), Positives = 34/130 (26%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            +  +     AG+P+ +A+  +   S + +                   +  +     P+
Sbjct: 285 FMRTLSTMQGAGVPIMEALGTLSKVSGNVIIERSVLAARDDVATGGRITTQLKADGVFPI 344

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                 +T +    +  G +      ++    +         +  ME      +   +  
Sbjct: 345 -----MATQMLAIGEETGAIEVMSGKVADFYENEVEEAVSRLSTLMEPMIMVVLGIIVGT 399

Query: 139 CVSTLVYFTS 148
            V  +     
Sbjct: 400 LVVAMYLPIF 409


>gi|167399416|ref|ZP_02304940.1| type II secretion system protein [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167051920|gb|EDR63328.1| type II secretion system protein [Yersinia pestis biovar Antiqua
           str. UG05-0454]
          Length = 205

 Score = 60.9 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 4/157 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +K+ + KRT   L   P  +DI    V++G+ + +++     +           + +   
Sbjct: 45  IKNALTKRTNNLLKSLPFFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTK 104

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +     L  +I  +  Y P  E+  F + +      G  + E L +LS+ +R+ + +  +
Sbjct: 105 RAEINGLENAIKELQYYSPAIEMKMFCSTLQYSISFGSTVYEQLTHLSQDMREMQLLMTE 164

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                +  K +  +   +      LV   SP  + +L
Sbjct: 165 ESISKLSTKLTLPLFLFILIPFVLLV--ISPSILELL 199


>gi|261856881|ref|YP_003264164.1| type II secretion system F domain protein [Halothiobacillus
           neapolitanus c2]
 gi|261837350|gb|ACX97117.1| Type II secretion system F domain protein [Halothiobacillus
           neapolitanus c2]
          Length = 298

 Score = 60.9 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 1/135 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQ 59
           +    K R    + D P  LD IV +V AGL ++  +          P+  EFRR++   
Sbjct: 140 LTERRKHRQRLVIKDLPVFLDFIVMAVEAGLNITGGIEQATLKGPKGPLAQEFRRLLRDM 199

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             GL+ +E++ RM   M + ++S F+  +    ++G +L  +L   +   R+ + ++A+ 
Sbjct: 200 RSGLARAEALKRMAERMDMPQISSFTGTLIQADRVGASLGASLRVQADQRREERFLRAEK 259

Query: 120 QALSMEAKASAWIIG 134
            AL    K    ++ 
Sbjct: 260 LALEAPVKMMLPLVM 274


>gi|86157112|ref|YP_463897.1| general secretion pathway protein F [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85773623|gb|ABC80460.1| General secretion pathway protein F [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 409

 Score = 60.9 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 57/165 (34%), Gaps = 6/165 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           +   A   +   V AG+P+ +A+  +V Q   + ++     V +  + G +L+++++   
Sbjct: 70  NLAIATRQLSVLVGAGIPLVEALTALVDQVEHERLKRVLGDVKQRVNEGAALADALAAHP 129

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R       S     +    +  G L   L  L+     +  +++K+        A   I 
Sbjct: 130 R-----VFSTLYVNMIRAGEHSGALEVVLVRLADFTESQARLRSKIMGTMAYPAAMMVIG 184

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             +   + T+V                 +    +AA+  +     
Sbjct: 185 SVILGVLFTVVIPKITKIFEDTKAQLPWNTRALIAASHFVADYWW 229



 Score = 37.4 bits (85), Expect = 0.90,   Method: Composition-based stats.
 Identities = 14/133 (10%), Positives = 39/133 (29%), Gaps = 5/133 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                   +   +R+G+P+  A+ ++     +   ++                +  +   
Sbjct: 273 AISRFARTLSTLLRSGVPLLTAMEIVKNIVGNTRLADVIDQARDAIREGESIAAPLK--- 329

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                E       +    +  G L E L N+++   D+           +E      +  
Sbjct: 330 --RSGEFPPLVYHMVAIGERSGALEEMLGNVAKAYEDQVETTVTALTSLLEPLMIVAMGV 387

Query: 135 SLPFCVSTLVYFT 147
            + F V +++   
Sbjct: 388 VVAFIVFSVLLPI 400


>gi|289643196|ref|ZP_06475323.1| type II secretion system protein [Frankia symbiont of Datisca
           glomerata]
 gi|289506967|gb|EFD27939.1| type II secretion system protein [Frankia symbiont of Datisca
           glomerata]
          Length = 349

 Score = 60.9 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 65/173 (37%), Gaps = 31/173 (17%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            ++R A+ ++D P ALD+I   + AG P+  A+ ++ G    P+ +E   V  +  LG S
Sbjct: 164 AQRRQARLVEDLPLALDLIAACLTAGAPIVAALDIVAGAVGGPLGTELGMVSRSLRLGAS 223

Query: 65  LSESISRMVRYMPL-------------------------------QEVSFFSTVISVQSQ 93
           ++E+  R++   P                                 E++ F+  +    +
Sbjct: 224 MAEACGRLLGPEPSSSRPAAKRWTRLVPVGPAPGGLGRPTATAEAHEIAAFARALHRSEE 283

Query: 94  LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
            G  L+ AL  L+   R R+  +A   A      A A +          L   
Sbjct: 284 SGARLAAALGRLADQTRARRQERALTAARRAGVTAVAPLGLCFLPAFVALGVV 336


>gi|218557044|ref|YP_002389957.1| type IV pilin biogenesis protein [Escherichia coli S88]
 gi|218363813|emb|CAR01473.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli S88]
          Length = 400

 Score = 60.9 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 55/181 (30%), Gaps = 22/181 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGVAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +   G +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANKLLM 235

Query: 180 R 180
           R
Sbjct: 236 R 236


>gi|119505083|ref|ZP_01627159.1| TonB-dependent siderophore receptor [marine gamma proteobacterium
           HTCC2080]
 gi|119459065|gb|EAW40164.1| TonB-dependent siderophore receptor [marine gamma proteobacterium
           HTCC2080]
          Length = 406

 Score = 60.9 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 53/157 (33%), Gaps = 9/157 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           +       +   V + LP+ + +     Q+    ++S    V      G +L+  +++  
Sbjct: 68  ELALITRQLATLVASALPLDECLQAAAEQTRKPSIKSILLEVRSRVSEGYTLASGMAQYP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           +             +    +  G L+  L  L+    +R+    K++   +       ++
Sbjct: 128 QAFG-----EMYRAMVHAGEQAGQLAPVLEQLAEYTENRQLTAQKLKLALIYPF---VLM 179

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           G     V+ L+ F  P  + +  +  +    L V   
Sbjct: 180 GVAVSVVAALMVFVVPELVGIFTHTKKELPPLTVGLI 216


>gi|42523100|ref|NP_968480.1| general secretion pathway protein F [Bdellovibrio bacteriovorus
           HD100]
 gi|39575305|emb|CAE79473.1| general secretion pathway protein F [Bdellovibrio bacteriovorus
           HD100]
          Length = 405

 Score = 60.9 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 48/159 (30%), Gaps = 8/159 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            D       +   ++A +P+ DA+  +  Q  +P  +E    +      ++   S     
Sbjct: 65  KDLSLMTRQLATLIKANIPLVDALTAVSEQVENPTLAE---ALADCKNMVN-EGSTLHKA 120

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   +     +    ++ G+L   L  L+     + +++AKV +          + 
Sbjct: 121 MLKYPNVFTTIYVSMVEAGEMSGSLDVILMRLAEFTEAQADLRAKVSSAMTYPVIMLVVT 180

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
             L   +   +       M  +        L     A +
Sbjct: 181 FGLMGFLFIFLIPK----MVTVFESAPQLQLPWYTVALI 215


>gi|119961380|ref|YP_948378.1| type II secretion system protein subunit F [Arthrobacter aurescens
           TC1]
 gi|119948239|gb|ABM07150.1| putative type II secretion system protein F domain [Arthrobacter
           aurescens TC1]
          Length = 313

 Score = 60.9 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 59/143 (41%), Gaps = 6/143 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   IK+R ++ L +FP+  +++  +V AG     A+  +   S+  + +EF  ++    
Sbjct: 158 LGLRIKRRESRMLSEFPSLAELMALAVAAGESAMGAMDRVSRSSNGELSAEFATILADTR 217

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L+E++        L  +  F   + V  + G  L++ L   +  +RD        +
Sbjct: 218 SGKPLTEALQAFSSRSELPPLVRFIDGLMVAVERGTPLADVLRAQAADVRDAA------K 271

Query: 121 ALSMEAKASAWIIGSLPFCVSTL 143
              ME+     I   +P     L
Sbjct: 272 RDLMESAGRKEIAMMVPLVFGVL 294


>gi|331659242|ref|ZP_08360184.1| general secretion pathway protein F [Escherichia coli TA206]
 gi|331053824|gb|EGI25853.1| general secretion pathway protein F [Escherichia coli TA206]
          Length = 407

 Score = 60.9 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 57/167 (34%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R     +       +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----DFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +       ML+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDALQASGVYW 229


>gi|261209942|ref|ZP_05924242.1| MSHA biogenesis protein MshG [Vibrio sp. RC341]
 gi|260841007|gb|EEX67539.1| MSHA biogenesis protein MshG [Vibrio sp. RC341]
          Length = 408

 Score = 60.9 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/165 (10%), Positives = 47/165 (28%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
           +        +    +AG+P+  ++  +     +  +++    V      G +LS      
Sbjct: 67  EVLVIFCRQMFSLTKAGVPLLRSMRGLTQNCHNKQLKAALESVCNELTNGRNLS-----A 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              M     S     +    +  G L +AL  L+         + +++            
Sbjct: 122 SMQMHPGVFSPLFVSMIQVGENTGRLDQALLQLANYYEQEVETRKRIKTAMRYPTFVISF 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +    F ++  V        +    D      + +A +   +   
Sbjct: 182 VVMAMFILNVKVIPQFTSMFSRFGVDLPLPTRILIATSDFFVNYW 226



 Score = 40.5 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/143 (11%), Positives = 42/143 (29%), Gaps = 6/143 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         + AG+P++ ++A+      +    E R +     +   +S S + +
Sbjct: 269 RAQLSRFSRTFSLMLSAGVPLNQSLALSAEAIDNKFL-EQRILEMKSQIESGVSISTTAV 327

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +           +    +  G + E L  +S       +   K     +E     ++
Sbjct: 328 NAKIFTP----LVIQMVSVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPVLLVFV 383

Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155
              +      +      G M+ L
Sbjct: 384 AAMVLVLALGIFLPMW-GMMDAL 405


>gi|288930650|ref|YP_003434710.1| type II secretion system F domain protein [Ferroglobus placidus DSM
           10642]
 gi|288892898|gb|ADC64435.1| Type II secretion system F domain protein [Ferroglobus placidus DSM
           10642]
          Length = 633

 Score = 60.9 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 66/157 (42%), Gaps = 4/157 (2%)

Query: 5   IKKRTAKFLDDF-PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           IKKR         P  L+ +  +  +G+P+  A+A+I    +  ++ E  ++       +
Sbjct: 413 IKKRQLNTALKLTPVFLNKLASANESGMPIHKAIAMIAKTETSALKKEIEKIKLDLDWKI 472

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           SL +++ R    + + E++   T++    +  GN++E L   ++   + + ++ +     
Sbjct: 473 SLEDALIRFANRIRVFELTRTITLLVEALRSTGNVTEVLRISAKDASNAELLRRERLGNM 532

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
                   II    F    +VY  S  +++VL     
Sbjct: 533 ---FMYVIIIYISFFVFIGIVYIISTTFLSVLAESTA 566



 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 65/186 (34%), Gaps = 7/186 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQH 60
            +I  R +K     P+A+  +    R G+ + D    I         V  EF +++    
Sbjct: 127 FIISDRKSKINRLLPHAVMFMYSLSRGGMGIIDIFKSIAAYEDVYSEVSKEFAKIVRDIE 186

Query: 61  -LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            L   L  +++  +   P + +      +      GG+++  L   +    +R   + K 
Sbjct: 187 ILSKDLRTALTEAIENTPSENLKDLLHGLITVIDSGGDVTSYLEERAEFYLERARQEQKS 246

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
               +   A ++I   +   +  ++       +  ++      ML  +    + IG  + 
Sbjct: 247 FLDFLSLMAESYITAFVAGPLFLIII----QTVMAVMGQGDELMLYSIIYLIIPIGSFMF 302

Query: 180 RLMINF 185
            ++I  
Sbjct: 303 AMVIKL 308


>gi|87301567|ref|ZP_01084407.1| pili biogenesis protein [Synechococcus sp. WH 5701]
 gi|87283784|gb|EAQ75738.1| pili biogenesis protein [Synechococcus sp. WH 5701]
          Length = 466

 Score = 60.9 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 58/170 (34%), Gaps = 14/170 (8%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   V +G+P+   + ++  Q      R     V      G+SL  ++ R  +   
Sbjct: 131 FASKLSALVDSGVPIVRGLTLVAKQQKKPIFRQALEAVASDVSQGVSLGVAMRRWPK--- 187

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +  +    +LGG L E L  L+ +L     ++ +++           I  ++ 
Sbjct: 188 --VFDRITIAMVEAGELGGVLDETLKRLALLLEQNAKLQNQIKGALAYPVIVLLIAIAVF 245

Query: 138 FCVSTLVYFTSPGYMNVLIND-PRGHMLLG-------VAAAFMLIGIMVM 179
             ++  +  T       L  + P    ++         A +  LI  +++
Sbjct: 246 LGMTIFLIPTFADIFEQLGAELPVFTQMMVNLSALLRSAFSLFLIAFVIL 295



 Score = 37.8 bits (86), Expect = 0.80,   Method: Composition-based stats.
 Identities = 13/136 (9%), Positives = 40/136 (29%), Gaps = 7/136 (5%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRY 75
                      +AG+P+  ++ ++   S + +              G+ +S ++SR    
Sbjct: 333 AQFCRTFSSLSKAGVPILMSLEIVRDTSRNSIFADTIEDCRVEIQDGIPVSVALSR---- 388

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                    +  +    +  G +   L+ ++    D   +  K     +E      +   
Sbjct: 389 --KNVFPEMALSMLAIGEETGEMDAMLSKVADFYEDEVEVAVKALTSLLEPIMIVIVGII 446

Query: 136 LPFCVSTLVYFTSPGY 151
           +   +  +       +
Sbjct: 447 VGAILVAMYLPMFSVF 462


>gi|86609588|ref|YP_478350.1| type IV pilus assembly protein PilC [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86558130|gb|ABD03087.1| type IV pilus assembly protein PilC [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 408

 Score = 60.9 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 51/143 (35%), Gaps = 6/143 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                   + AG+ +  ++ ++  Q+ +  ++   R +      G +LS+SI        
Sbjct: 72  FSRQFAALINAGVSMVRSLTIMEEQTGNPKLKKYLRAIRAEVEAGKNLSDSIRPYPDAFD 131

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    ++GG L E L  L+++L D   ++ ++++          +   + 
Sbjct: 132 G-----LYCSMVQAGEVGGVLDEVLNRLAKLLEDMDRLQKQIKSAMTYPVVVTILAVLIF 186

Query: 138 FCVSTLVYFTSPGYMNVLINDPR 160
             +   +  T     N L  +  
Sbjct: 187 LGMVLFILPTFESIYNDLGGELP 209



 Score = 36.3 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 34/130 (26%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
                    R+G+PV  ++ ++   S + V +             S+SE           
Sbjct: 277 FCRTFGALTRSGVPVLTSLEIVRDTSGNQVVANAIDAARQ-----SISEGGQIAPALDKA 331

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +     +  +    +  G L   L   +           +     +E      + G +  
Sbjct: 332 KVFPVMAIQMISVGEETGELDAMLMKTADFYELEVEEAVRALTSLLEPLMIVILGGMVGC 391

Query: 139 CVSTLVYFTS 148
            +  +     
Sbjct: 392 IIVAMYLPMF 401


>gi|162147495|ref|YP_001601956.1| type II secretion system protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786072|emb|CAP55654.1| putative type II secretion system protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 313

 Score = 60.9 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 58/147 (39%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +K +            P+ALD++V    AGLP+  A+  +  +    +  V +EFR   +
Sbjct: 153 VKRMQAHYLRNVDQGIPDALDMLVICAEAGLPIEAAIGRVGREMTAVNRSVANEFRLTAQ 212

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +     +          L  +    + ++   Q G ++++AL  LS  +R     + 
Sbjct: 213 EMGVASDRRDVFLHFGERTNLSSMRRIGSALNQTLQAGSSVTQALRVLSVEMRKDALTEY 272

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +A  +    +  +I  +   V  +V
Sbjct: 273 EARAARLPVLLTLPMILFILPVVFLVV 299


>gi|220936426|ref|YP_002515325.1| general secretory pathway protein F [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997736|gb|ACL74338.1| general secretory pathway protein F [Thioalkalivibrio sp. HL-EbGR7]
          Length = 406

 Score = 60.9 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/160 (11%), Positives = 46/160 (28%), Gaps = 6/160 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +    +AG+P+   +  +   S +  +    R V++    G  L+ +++R        
Sbjct: 73  RQLYALTKAGVPIIRGLNQLADASKNERMSKALREVVDDLESGRDLAGAMARHPDI---- 128

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
             S     +    +  G L +AL  +   +   +    +++            I    F 
Sbjct: 129 -FSPLFVSMVQVGEASGRLDDALLRVFNYMERERQTVNQIRTALRYPTFVVIAISVAIFI 187

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +   V             D        +  +  +     +
Sbjct: 188 LMAYVIPVFAQVFERFDLDLPLATRAIITVSNFVSAWWWL 227


>gi|319795783|ref|YP_004157423.1| type II secretion system f domain [Variovorax paradoxus EPS]
 gi|315598246|gb|ADU39312.1| Type II secretion system F domain [Variovorax paradoxus EPS]
          Length = 316

 Score = 60.9 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 60/158 (37%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR---SEFRRVIE 57
           +      R  +   + P  +D++      GL +  ++ ++    S  +R    E      
Sbjct: 153 LGQFAAARRERVAQELPLFIDLLRLLQGVGLSLDQSLQIMANDFSHVLRVLGYELAFANR 212

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   S+ R+      + +    +++    + GG + E L   S  LR+ +  + 
Sbjct: 213 QYSQGRTREHSLQRLATLHKNENLGGLVSLLVQVDRHGGAIQEPLRIFSDRLREHRRSEM 272

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           K +   +  K +  ++ +L   +   +    PG++ ++
Sbjct: 273 KDRIGKITVKMTGVMVTTLLPALI--IVTAGPGFIAII 308


>gi|331661478|ref|ZP_08362402.1| protein transport protein HofC [Escherichia coli TA143]
 gi|331061393|gb|EGI33356.1| protein transport protein HofC [Escherichia coli TA143]
          Length = 400

 Score = 60.9 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 55/181 (30%), Gaps = 22/181 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGVAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLADKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +   G +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPVLTQGIMTLASFSGEWGWLLVLFGFLLAIANKLLM 235

Query: 180 R 180
           R
Sbjct: 236 R 236


>gi|227497416|ref|ZP_03927648.1| possible type II secretion system protein [Actinomyces urogenitalis
           DSM 15434]
 gi|226833092|gb|EEH65475.1| possible type II secretion system protein [Actinomyces urogenitalis
           DSM 15434]
          Length = 218

 Score = 60.9 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 72/178 (40%), Gaps = 4/178 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++H ++ R  + ++ +P A+D++  ++  G+ + +A++ +       +R  FR    +  
Sbjct: 30  LRHGVEVRRRRQVESWPEAVDLLGAALSQGVGLPEALSGLAEAGPPALRPAFRAFALSYT 89

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKV 119
           L   L E++ R+   +          ++ + Q      L+ AL  LS  LR  +  +  +
Sbjct: 90  LSGILDEALDRLDGELDDWVGEHLMALVRLAQETGTAGLATALHELSATLRVERASRRLM 149

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
            +        + ++  +P+ V   ++ +         +      LL  A      GI+
Sbjct: 150 VSSLAWGARGSCLLAFVPWLVIGALHCSVVHLTPHASST---RQLLAGACLSGAAGIL 204


>gi|258593222|emb|CBE69561.1| general secretory pathway component, cryptic [NC10 bacterium 'Dutch
           sediment']
          Length = 408

 Score = 60.9 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 54/162 (33%), Gaps = 6/162 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+ +  ++A+++  + +       R ++     G S ++ +++  R   
Sbjct: 74  FTQQLATLLEAGMELDRSLAILLDLTDNQRFRSILRSILTDIQAGNSFADGLAKHPRL-- 131

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               S     +    +  G L   L+ L+  +   K ++ +V +  +      ++ G   
Sbjct: 132 ---FSRLYINMVKAGEASGVLEVILSRLAGFMERSKAVRDEVTSALIYPILLLFVGGGAV 188

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             +   V        +           + +A +    G   +
Sbjct: 189 VVMMNFVIPRFAQIFSDTKQLMPLPTRILLAISAFTTGYWWV 230


>gi|289524034|ref|ZP_06440888.1| pilin biogenesis protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289502690|gb|EFD23854.1| pilin biogenesis protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 406

 Score = 60.9 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 57/162 (35%), Gaps = 10/162 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + AG+ +  A+ ++  Q+ +   +E  R      +   +   IS        
Sbjct: 70  FFRQLATMLDAGITLGMALDMLAEQTENKRFAEAIR-----EVKTMVDRGISLSAAMATK 124

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +E S     I+   + GG L  +L  L+  L  +  ++ K+ + S        ++G    
Sbjct: 125 REFSKLMVAIARAGEEGGVLESSLDRLATFLERQDELRKKIISASTYPA---VVMGFALM 181

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLG--VAAAFMLIGIMV 178
            V  LV    P + ++ ++      L    +    M +    
Sbjct: 182 VVFILVTVIMPRFTSIFMDLDIRLPLPTRIILGFSMWMSHFW 223



 Score = 34.3 bits (77), Expect = 7.5,   Method: Composition-based stats.
 Identities = 15/142 (10%), Positives = 41/142 (28%), Gaps = 5/142 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                      V+AG+P+  A+ +    S +   +                 S+    + 
Sbjct: 269 LARTFRTFAALVQAGVPILSALEMTADVSGN---AVVEDAFAQMSDQAKRGMSMGETAKK 325

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
             ++ +   +  +    +  G L + +  ++       + K K     +E     ++ G 
Sbjct: 326 --IKVIPPLAAHMITVGEQTGRLEDMVDKVADWFEFELDEKIKRLTSIIEPVLIVFVGGV 383

Query: 136 LPFCVSTLVYFTSPGYMNVLIN 157
           +   V  +          +L  
Sbjct: 384 VALVVFAVFMPIIGSIQGLLAG 405


>gi|288919650|ref|ZP_06413978.1| type II secretion system protein [Frankia sp. EUN1f]
 gi|288348939|gb|EFC83188.1| type II secretion system protein [Frankia sp. EUN1f]
          Length = 367

 Score = 60.9 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 62/157 (39%), Gaps = 6/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R  + L +FP   +++  +V AG     A+  +   +   + +E R  +    
Sbjct: 211 LTRAIREREDRMLMEFPTVAELLALAVTAGESAIGALERVSRLTRGELGTELRLALADAR 270

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +L +++  +     L  ++ F   ++V  + G  L++ L   +  +R+        +
Sbjct: 271 AGATLVQALEGIAARTSLPPLTRFVDGMAVAIERGTPLADVLRAQAVDVREAG------K 324

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
              +EA     I   +P     L       +   L++
Sbjct: 325 RQLLEAGGRKEIAMMIPVVFLILPTTVIFAFYPALVS 361


>gi|300857635|ref|YP_003782618.1| hypothetical protein cpfrc_00218 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685089|gb|ADK28011.1| putative membrane protein [Corynebacterium pseudotuberculosis
           FRC41]
          Length = 256

 Score = 60.9 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 67/182 (36%), Gaps = 1/182 (0%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K  ++    +  ++   AL  +   +RAG+  S A+  +     +    +          
Sbjct: 72  KRRLEASQRREQEEISTALGSLAGDLRAGVEASVALENVAQNLPESALKDTLMAASRSSR 131

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
               + +  +  R + +  +   +    +  + G  L+  L      L +      + QA
Sbjct: 132 IGGSASAYWQQ-RALAIHGIEKITHAWRLSERYGIALAPLLEKNRASLDEDLRHAERTQA 190

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
               AKA+A+I+ +LPF    L        +  L +   G +LL +    + +G +  + 
Sbjct: 191 ALQGAKATAYILTALPFVGILLGRGMGVNALGFLFHTRIGAVLLILGTLLVCVGNLWSQA 250

Query: 182 MI 183
           ++
Sbjct: 251 IM 252


>gi|328759517|gb|EGF73126.1| membrane spanning protein [Propionibacterium acnes HL099PA1]
          Length = 288

 Score = 60.9 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 61/173 (35%), Gaps = 1/173 (0%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
            ++     +  +   +  G  +  AV +   ++   +     +++      +   E+  R
Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKMIAESVDQLVSRLDGRMEPREAFQR 163

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +   E       +++ +      S  L  ++  ++ R  +  +V+A   + + S  
Sbjct: 164 MADKLDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            I  +   +   +      ++  L   P G +L+ VA    +  ++ M  M  
Sbjct: 224 QITLVTIAMFGALLVIGRAFLAPL-ATPPGQILVAVAVVMYVTALVQMYRMAR 275


>gi|308048084|ref|YP_003911650.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
           9799]
 gi|307630274|gb|ADN74576.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
           9799]
          Length = 419

 Score = 60.9 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 60/188 (31%), Gaps = 16/188 (8%)

Query: 8   RTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65
           R AK    D       I   + AG+P+  A+ ++     +  VR     ++     G  L
Sbjct: 72  RKAKIRGMDIAVVTRQIATMLLAGVPLVTAIEMVGRSHENDAVRKLLAIILAEVQSGTPL 131

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S+++         Q        +    +  G L +    ++      + +K+K++     
Sbjct: 132 SKALR-----PHRQYFDDLYCDLVAAGEHSGTLDQVFDRIATYREKSEALKSKIKKAMFY 186

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA---------FMLIGI 176
             A   +  S+   +   V        N    +      + +  +         F+   +
Sbjct: 187 PTAVVVVAISVTVLLLLFVVPQFEAIFNDFGAELPIFTQIVINLSRFLSESWYYFLAAIV 246

Query: 177 MVMRLMIN 184
           +V+ L I 
Sbjct: 247 IVIWLFIR 254


>gi|126665140|ref|ZP_01736123.1| Type II secretory pathway, component PulF [Marinobacter sp. ELB17]
 gi|126630510|gb|EBA01125.1| Type II secretory pathway, component PulF [Marinobacter sp. ELB17]
          Length = 406

 Score = 60.9 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 20/168 (11%), Positives = 52/168 (30%), Gaps = 8/168 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   ++AG+P+  +  ++     +  ++     V      G S + S+ +  R   
Sbjct: 71  LTRQLATMMKAGVPLVQSFDIVADGLENRGLQDLVMSVRNDIASGNSFAGSLRKHPRQ-- 128

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G L + L  ++  +   + +K KV+       A   +   + 
Sbjct: 129 ---FDDLYCNLVDSGEKAGALEKMLDRIATYMEKTEILKKKVKKAMTYPIAVVVVAIVVT 185

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA--FMLIGIMVMRLMI 183
             +   V        N    +      + V  +        +V+  +I
Sbjct: 186 AILLVKVVPQFESLFNGFGAELPVFTQMVVRLSEWMQTWWFVVLLGII 233



 Score = 40.1 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/128 (11%), Positives = 38/128 (29%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
            ++  +  AG+P+ DA+  + G + + V            +   +S              
Sbjct: 277 RVLSTTFAAGVPLVDALESVAGATGNAVYR-----DAIMRIRSDVSSGTQLQASMRAQDV 331

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
               +  ++   +  GNL E L  ++       +         ME    + +   +   +
Sbjct: 332 FPVMAVQLTAIGEESGNLDEMLEKVAEHYEAVVDDMVDNLTALMEPMIMSVLGVLVGGLI 391

Query: 141 STLVYFTS 148
             +     
Sbjct: 392 IAMYLPIF 399


>gi|283851908|ref|ZP_06369184.1| type II secretion system protein [Desulfovibrio sp. FW1012B]
 gi|283572632|gb|EFC20616.1| type II secretion system protein [Desulfovibrio sp. FW1012B]
          Length = 405

 Score = 60.9 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 52/162 (32%), Gaps = 6/162 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLSESISRMVRYMP 77
               +   + +GL +S ++A++  QS           +  +   G + SE+++   R   
Sbjct: 71  LTRQLASLLGSGLTLSRSLALLARQSEAKRARGVIDALGEKLRSGATFSEALAAFPR--- 127

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
             E       +    + GG + EA   L+ I    + + AK ++  +        +    
Sbjct: 128 --EFDALYVAMIRAGEAGGRMEEAAERLAGIREASEEIAAKFKSALIYPAFMFLAMSGAV 185

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             + T V          +         + + A  +      +
Sbjct: 186 IVLVTFVVPRFGQLFADMGQAMPLPTRMLLDAVAVFQAYWWL 227


>gi|157146466|ref|YP_001453785.1| hypothetical protein CKO_02226 [Citrobacter koseri ATCC BAA-895]
 gi|157083671|gb|ABV13349.1| hypothetical protein CKO_02226 [Citrobacter koseri ATCC BAA-895]
          Length = 402

 Score = 60.9 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 57/169 (33%), Gaps = 14/169 (8%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74
                  +   V A LP+  A+  I  Q+ D  +      + +    G +L ++ S+  R
Sbjct: 65  LSMFTRQLSTLVNAALPLESALKAISKQTEDKKLAVMVGEIRDKVVEGHTLFDAFSQFPR 124

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                        + +  +  G+L   L  L+     R+ MK+K+    +       +  
Sbjct: 125 T-----FDKLYCTLVMAGEKTGHLGGVLEKLAEYNEQRQKMKSKLSQAMVYPIT---LTV 176

Query: 135 SLPFCVSTLVYFTSPGYMNVLIND-----PRGHMLLGVAAAFMLIGIMV 178
                +S L+    P  +   ++           L+ V+      G+++
Sbjct: 177 VAIAVISILLVAVVPQVIEQFVHMKQQLPVTTRTLIAVSDFLQAYGMVI 225


>gi|257053921|ref|YP_003131754.1| type II secretion system protein [Halorhabdus utahensis DSM 12940]
 gi|256692684|gb|ACV13021.1| type II secretion system protein [Halorhabdus utahensis DSM 12940]
          Length = 678

 Score = 60.9 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 15/150 (10%), Positives = 50/150 (33%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
               +      L  +  +   G+ + +++ ++   SS  +  EF  +      G +L ++
Sbjct: 457 RHSIIGKLSENLRKLSSANETGMTLLESLNIVARTSSGRLADEFSIMHRKVQYGTNLKQA 516

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           +        +  +S    +IS   +    + + L+  ++   ++ ++    ++ +     
Sbjct: 517 LREFNNKYHVPRLSRTVKLISEAQEASNQIQDVLSTAAQASENQDDIDRDRKSRTRMQVV 576

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158
              +       V  ++       M  L   
Sbjct: 577 IIIMTFLTLLGVIAMLKVQFFETMAGLSQT 606



 Score = 47.4 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 53/179 (29%), Gaps = 7/179 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQH 60
                R  +      +A+  +      GL   D +  I     +   V  EF+ ++    
Sbjct: 141 FRASARERQINVMLSDAVSFMYALSVGGLNQLDILEAIAAADDTYGEVAKEFQSIVLETT 200

Query: 61  LG-LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                   +I       P  E+S F T +      GG+++  L +             + 
Sbjct: 201 YFDTDYRTAIRNQAIQTPSDELSQFLTDMLSIVDSGGDMTSFLEDQKNKYMRTSKQTQER 260

Query: 120 QALSMEAKASAWII----GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
              ++E     ++       L   +  ++         ++     G + +   A  +L+
Sbjct: 261 MLETLELFGEMYMTLSLFPLLLIIILVVMSMMGNASTQLMYITVYGLIPMINVAFLVLV 319


>gi|1016256|gb|AAA96018.1| MshG [Vibrio cholerae C6706]
          Length = 363

 Score = 60.9 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 16/165 (9%), Positives = 43/165 (26%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72
           +        +    +AG+P+  ++  +     +         V      G +LS      
Sbjct: 67  EVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS-----A 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +     S     +    +  G L +AL  L+         + +++            
Sbjct: 122 SMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITF 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +    F ++  V        +    D      + +  +   +   
Sbjct: 182 VLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYW 226


>gi|269968034|ref|ZP_06182072.1| MSHA biogenesis protein MshG [Vibrio alginolyticus 40B]
 gi|269827391|gb|EEZ81687.1| MSHA biogenesis protein MshG [Vibrio alginolyticus 40B]
          Length = 407

 Score = 60.9 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 53/168 (31%), Gaps = 6/168 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +    +AG+P+  ++  ++    +    E    V+     G  LS ++ +  +   
Sbjct: 71  FSRQLFSLTKAGVPLLRSMRGLLQNCENKQLKEALEDVVSELSNGRGLSSAMQQHSK--- 127

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               S     +    +  G L +AL  L+         + +++A           I    
Sbjct: 128 --VFSPLFVSMINVGENTGRLDQALLQLANYYEQELETRKRIKAAMRYPTFVIIFITIAM 185

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           F ++ LV             +      + +A +   +   V+ ++   
Sbjct: 186 FVLNILVIPEFASMFARFGVELPLPTRILIATSNFFVNYWVLLVVAMI 233



 Score = 37.8 bits (86), Expect = 0.75,   Method: Composition-based stats.
 Identities = 11/135 (8%), Positives = 37/135 (27%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         +++G+P++ ++A+      +              +  ++    +  
Sbjct: 268 RAQLSRFARTFSLMLKSGVPLNQSLALAGEALGNRFLE-----NRILEMKSAIEAGSTIS 322

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           V  +  +  +     +    +  G + E L  +S       +   K     +E      +
Sbjct: 323 VTAINSKIFTPLVIQMIAVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPLLLVIV 382

Query: 133 IGSLPFCVSTLVYFT 147
            G +      +    
Sbjct: 383 AGMVMVLALGIFLPM 397


>gi|157373565|ref|YP_001472165.1| type II secretion system protein [Shewanella sediminis HAW-EB3]
 gi|157315939|gb|ABV35037.1| type II secretion system protein [Shewanella sediminis HAW-EB3]
          Length = 421

 Score = 60.9 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/167 (11%), Positives = 48/167 (28%), Gaps = 6/167 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
             L K        D       +   + AG+P+   + ++        +R     ++    
Sbjct: 69  NSLFKSEKKITAMDIAMMTRQVATMLSAGVPIVTTLELLGRGHEKPKMRELLATIVGDVQ 128

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ LS+S+         Q        +    +  G+L      ++      + +K+K++
Sbjct: 129 SGIPLSDSLK-----PHRQYFDDLYVDLVAAGEHSGSLDAVFDRIATYREKAEALKSKIK 183

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
                  A   +  ++   +   V             +      + V
Sbjct: 184 KAMFYPAAVVVVAIAVTALLLLFVVPQFEEIFQGFGAELPAFTQMIV 230


>gi|153833903|ref|ZP_01986570.1| general secretion pathway protein F [Vibrio harveyi HY01]
 gi|148869741|gb|EDL68718.1| general secretion pathway protein F [Vibrio harveyi HY01]
          Length = 406

 Score = 60.9 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 57/169 (33%), Gaps = 8/169 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
             +       +   V++G+P+ + +  +  Q+    +RS    V      G  L++S+  
Sbjct: 65  TAELALITRQLSTLVQSGMPLEECLKAVSEQAEKPRIRSMIAAVRSKVTEGYPLADSLGD 124

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    +  G+L   L  L+  + +R+ M++K+    +       
Sbjct: 125 YP-----HVFDELFRSMVAAGEKSGHLDAVLERLADYVENRQKMRSKLLQAMIYPVVLVV 179

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMV 178
               +   + + V       +  +  +      MLL  +      G+++
Sbjct: 180 FAVGIVSLLLSSVVPKIIEPIIQMGQELPQSTQMLLSASEFVQEWGLII 228


>gi|262189839|ref|ZP_06048173.1| general secretion pathway protein F [Vibrio cholerae CT 5369-93]
 gi|262034282|gb|EEY52688.1| general secretion pathway protein F [Vibrio cholerae CT 5369-93]
          Length = 379

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 64/183 (34%), Gaps = 20/183 (10%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V++G+P+ + +  +  QS    +R+    V      G +LS+S+    
Sbjct: 40  DLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYP 99

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G+L   L  L+    +R+ M++K+Q   +       ++
Sbjct: 100 -----HVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPV---VLV 151

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-----------AFMLIGIMVMRLM 182
                 V+ L+    P  +   +   +                      +L+G++++  +
Sbjct: 152 VFAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYL 211

Query: 183 INF 185
           + +
Sbjct: 212 VRW 214


>gi|254426789|ref|ZP_05040496.1| general secretion pathway protein F [Alcanivorax sp. DG881]
 gi|196192958|gb|EDX87917.1| general secretion pathway protein F [Alcanivorax sp. DG881]
          Length = 405

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 52/155 (33%), Gaps = 9/155 (5%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
              +   +++GLPV  A++ +  Q ++D +      V      G SL+ S     R  P 
Sbjct: 71  TRQLATLLKSGLPVEQALSAVSKQAANDRIERIMLAVRAKVREGYSLARSFESFPRAFP- 129

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                         +  G+L + L  L+  L  R +    V    +      +I+     
Sbjct: 130 ----EMYRATVAAGEQSGHLEQVLEQLADYLETRHDTGRSVAQAMIYPA---FIMVFASI 182

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
            +  ++ F  P  + V     +   LL      M 
Sbjct: 183 VIMLMMTFVVPKLVAVFEGRDQALPLLTRIVMAMS 217


>gi|399800|sp|P31704|GSPF_ERWCH RecName: Full=General secretion pathway protein F; AltName:
           Full=Pectic enzymes secretion protein outF
 gi|148436|gb|AAA24833.1| secretory component [Erwinia chrysanthemi]
 gi|259984|gb|AAB24180.1| OutF=pectic enzyme secretion protein [Erwinia chrysanthemi,
           Peptide, 404 aa]
          Length = 404

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 53/158 (33%), Gaps = 10/158 (6%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66
           R+ +   D       +   V A LP+ +A+  +  QS    + +    V      G SL+
Sbjct: 61  RSHRIASDLALLTRQLATLVAA-LPLEEALDAVAKQSEKPKLSALMAAVRAKVVEGHSLA 119

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++                  +    +  G+L   L  L+     R  M++++Q   +  
Sbjct: 120 EAMGNFP-----GSFERLYCAMVAAGEASGHLDAVLNRLADYTEQRHEMRSRIQQAMIYP 174

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
                +       VS L+    P  +   I+  +   L
Sbjct: 175 ---CVLTLVAISVVSILLSAVVPKVVEQFIHMKQALPL 209


>gi|288942707|ref|YP_003444947.1| Type II secretion system F domain-containing protein
           [Allochromatium vinosum DSM 180]
 gi|288898079|gb|ADC63915.1| Type II secretion system F domain protein [Allochromatium vinosum
           DSM 180]
          Length = 402

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/167 (10%), Positives = 48/167 (28%), Gaps = 6/167 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71
             +       +   + AGL +  ++ ++V   S + +      + E    G + S ++  
Sbjct: 62  QKEIGILTRELATLLEAGLTLDRSLQILVDLTSEEHLVRVLSDLQERVRGGATFSSALEA 121

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P          +    +  G + + L  L+  L     ++  V +  +      +
Sbjct: 122 QDKQFP-----RLYINMVRAGEASGAMEQVLDRLADYLERLAELRQTVTSALVYPSILLF 176

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +       +   V          +         + VAA  +      
Sbjct: 177 VAALSVILLLVFVVPQFTVLFEDMGEALPLSTQIVVAAGDLFRHYWW 223


>gi|300786332|ref|YP_003766623.1| type IV pilus assembly protein PilC [Amycolatopsis mediterranei
           U32]
 gi|299795846|gb|ADJ46221.1| type IV pilus assembly protein PilC [Amycolatopsis mediterranei
           U32]
          Length = 401

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 52/158 (32%), Gaps = 4/158 (2%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +   VRAGLP+ DAV ++  ++++   +   R +E    G                + 
Sbjct: 68  RQLGAFVRAGLPLIDAVRILGEEAANSSVARMLRSVEQGLRGGDRLSDCVD----RHPKI 123

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
              F   I   ++L G L   L  L+  L      + K++A  +     A +       +
Sbjct: 124 FPEFYREILRSAELTGQLDVVLDQLADYLERDLEARRKIKAALIYPAMIAVMSVVTVVVL 183

Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +T V      +   L         + +A    L     
Sbjct: 184 ATFVLPRFKSFFASLNAKLPLPTRMLLAITDFLGAWWW 221



 Score = 44.3 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 36/129 (27%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
              I+   V AG+P+ +A+ V      + V      +     +G ++             
Sbjct: 269 FCRILSSMVSAGVPLPEALRVATDSLRNRVF-----MRALARVGQAVLNGEGLARPLTGS 323

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                 +  +    +  G L   L   ++      + + K      E      +   + F
Sbjct: 324 GLFPVTAAQMIRVGEDTGTLDTQLEITAQYYEGELDYRLKKLTALFEPAVIVVMGLVVGF 383

Query: 139 CVSTLVYFT 147
               LV   
Sbjct: 384 VAVALVSAM 392


>gi|28900581|ref|NP_800236.1| putative TadC protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365461|ref|ZP_05777998.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus K5030]
 gi|260877526|ref|ZP_05889881.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AN-5034]
 gi|260897533|ref|ZP_05906029.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus Peru-466]
 gi|260901735|ref|ZP_05910130.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ4037]
 gi|28808961|dbj|BAC62069.1| putative TadC [Vibrio parahaemolyticus RIMD 2210633]
 gi|308087116|gb|EFO36811.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus Peru-466]
 gi|308090674|gb|EFO40369.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AN-5034]
 gi|308108821|gb|EFO46361.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ4037]
 gi|308114358|gb|EFO51898.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus K5030]
 gi|328470523|gb|EGF41434.1| putative TadC protein [Vibrio parahaemolyticus 10329]
          Length = 288

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 60/157 (38%), Gaps = 4/157 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +               P  LD++   V  G+ +  ++  +  +      +    V +   
Sbjct: 133 ISSRGNANVRHVSSRLPFLLDLMNVCVHTGMTLEASLDYLSNELKTVDENLAYVVKKTSE 192

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +   + L  +++     +P  E   F   ++   + G ++   LA+L+  +R+   ++ +
Sbjct: 193 RAKIVGLDRALTEFYDLVPTTEAQSFVMTLTQSLKYGSSVGAVLASLASDIREINMLELE 252

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            +   M AK S  +I  +   +  L+    PG M +L
Sbjct: 253 EKIGKMGAKMSIPMIAFIMIPIVVLIAA--PGIMRML 287


>gi|121608600|ref|YP_996407.1| general secretion pathway protein F [Verminephrobacter eiseniae
           EF01-2]
 gi|121553240|gb|ABM57389.1| general secretion pathway protein F [Verminephrobacter eiseniae
           EF01-2]
          Length = 412

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 55/159 (34%), Gaps = 7/159 (4%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                  I   V +GLP+  A+  +  ++ D  +      +  +    S+          
Sbjct: 73  LTIWTRQIAGLVSSGLPLERALTCLSQEADDERQRHLVAALRAEVNAGSM----FARALA 128

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
              +E S     +    +  GNL+  L  L+  L +R+ +KA++   ++       +   
Sbjct: 129 QHPREFSDIYCAVISAGEHSGNLALVLERLADDLEERQALKAQLIGAALYPA---IVTLV 185

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
               V  LV +  P   +V +   R   LL  A   +  
Sbjct: 186 AGAIVLFLVGYVVPQVASVFVGTKRALPLLTQAMMGLSA 224


>gi|325913939|ref|ZP_08176297.1| Type II secretory pathway component [Xanthomonas vesicatoria ATCC
           35937]
 gi|325539851|gb|EGD11489.1| Type II secretory pathway component [Xanthomonas vesicatoria ATCC
           35937]
          Length = 405

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 20/183 (10%), Positives = 56/183 (30%), Gaps = 5/183 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ L++K+              +   + AG P+  A+++++         E  R +    
Sbjct: 54  LRMLLRKKPFD-NAALVQFTQQLSTLIGAGQPLDRALSILMD----LPEDEKSRRVIGDI 108

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                  +             S     +    + GG++ + L  L+  L   + +K KV 
Sbjct: 109 RDTVRGGAPLSSALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALKGKVI 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
              +       ++G     +   V          L           ++   ++    ++ 
Sbjct: 169 NALIYPAILLAVVGCALLFLLGYVVPQFAQMYESLDVALPWFTQAVLSVGLLVRDWWLVL 228

Query: 181 LMI 183
           +++
Sbjct: 229 IVV 231


>gi|330883209|gb|EGH17358.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 229

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
               +    +   + AG P+  ++ +++ Q      ++   R+ E    G  LS ++   
Sbjct: 62  AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEE 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    S     +    + GG L   L  LS  L   + ++ +V    +      ++
Sbjct: 122 GTQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +  +   ++ L+ +  P ++ +  +   G  +  +    + +G  +
Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGQFL 217


>gi|329765281|ref|ZP_08256861.1| Flp pilus assembly protein TadC [Candidatus Nitrosoarchaeum limnia
           SFB1]
 gi|329138187|gb|EGG42443.1| Flp pilus assembly protein TadC [Candidatus Nitrosoarchaeum limnia
           SFB1]
          Length = 304

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 60/142 (42%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R      + P  L  ++ SV++G  +  A+     ++   +  E + +      G  + 
Sbjct: 82  QRRDSIDRNMPVFLLALLSSVQSGSNLIKAIEQAAERNLGALTPELKNLKANISWGTPIE 141

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++     +    +     + ++ +  ++GG++SE L  + + + + +N++   ++     
Sbjct: 142 DAFENFAKRTGTRVSRRVTVLLEMAMKIGGDVSENLEMIQKHVSEMQNIEKSRKSALQPY 201

Query: 127 KASAWIIGSLPFCVSTLVYFTS 148
             + +I  ++   VS L+  + 
Sbjct: 202 TYTIYISFAVFLAVSVLLTTSF 223


>gi|227327881|ref|ZP_03831905.1| general secretion pathway protein F [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 408

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 54/169 (31%), Gaps = 9/169 (5%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLS 64
           +++      D       +   V A LP+ +A+  +  QS    +      V      G S
Sbjct: 60  RRKIRLSTSDLALLTRQLATLVAASLPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHS 119

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L++++                  +    +  G+L   L  L+     R+ M++++Q   +
Sbjct: 120 LADAMKCFP-----GSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMI 174

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
                  +       VS L+    P  +   I+  +   L       M 
Sbjct: 175 YP---CVLTVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMS 220


>gi|119512357|ref|ZP_01631442.1| pilin biogenesis protein [Nodularia spumigena CCY9414]
 gi|119463008|gb|EAW43960.1| pilin biogenesis protein [Nodularia spumigena CCY9414]
          Length = 405

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/174 (10%), Positives = 61/174 (35%), Gaps = 14/174 (8%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                   + AG+ +  ++ V+  Q S+  ++     +      G++LSES+ +      
Sbjct: 70  FSRQFAVLMNAGVAIVRSLGVLGEQCSNPRLKQALLEISNDVQTGMNLSESMQKHPECFD 129

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    ++GG L + L  L+++L D   ++ ++++          +  ++ 
Sbjct: 130 G-----LYVSMVQAGEIGGVLDDVLNRLAKLLEDVARLQNQIKSALSYPVVVGILATTIF 184

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA--------AFMLIGIMVMRLMI 183
             ++  +          +  +        +          +  ++G  ++  ++
Sbjct: 185 VAMTVFLIPIFANIFADIGVELPALTQFLMLCSKILRSWWSLAIVGSFIVLRIV 238


>gi|91209168|ref|YP_539154.1| type IV pilin biogenesis protein [Escherichia coli UTI89]
 gi|117622389|ref|YP_851302.1| type IV pilin biogenesis protein [Escherichia coli APEC O1]
 gi|237704253|ref|ZP_04534734.1| type IV pilin biogenesis protein [Escherichia sp. 3_2_53FAA]
 gi|91070742|gb|ABE05623.1| protein transport protein HofC [Escherichia coli UTI89]
 gi|115511513|gb|ABI99587.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli APEC O1]
 gi|226902165|gb|EEH88424.1| type IV pilin biogenesis protein [Escherichia sp. 3_2_53FAA]
 gi|294490593|gb|ADE89349.1| type IV pilus assembly protein PilC [Escherichia coli IHE3034]
 gi|307629677|gb|ADN73981.1| type IV pilin biogenesis protein [Escherichia coli UM146]
 gi|315285150|gb|EFU44595.1| type II secretion system F domain protein [Escherichia coli MS
           110-3]
 gi|323950900|gb|EGB46777.1| type II secretion system protein F [Escherichia coli H252]
 gi|323955302|gb|EGB51075.1| type II secretion system protein F [Escherichia coli H263]
          Length = 400

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 55/181 (30%), Gaps = 22/181 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGVAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +   G +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANKLLM 235

Query: 180 R 180
           R
Sbjct: 236 R 236


>gi|149927150|ref|ZP_01915407.1| type II secretion system protein [Limnobacter sp. MED105]
 gi|149824089|gb|EDM83310.1| type II secretion system protein [Limnobacter sp. MED105]
          Length = 412

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/137 (10%), Positives = 42/137 (30%), Gaps = 1/137 (0%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            +  +   +++G+P+  ++ +I G  +   +   + V+      +  S            
Sbjct: 75  FVRQLAVMIQSGVPLGQSLGLIAGGMTSKSKRAIQTVVRAIRADVE-SGLKLSEAMRKHP 133

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +             +  G L  AL  L+  +     ++ KV+   +       +   +  
Sbjct: 134 RCFDNLFCNTLAAGENAGELDSALGRLATHIEKTLRIRQKVRKAMIYPSIVVLVAIGVTV 193

Query: 139 CVSTLVYFTSPGYMNVL 155
            +   V  +     +  
Sbjct: 194 GMLLFVLPSFKSIYSQF 210



 Score = 37.8 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 31/130 (23%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
                     +G+P++ A+  +   S      +    I                 R  P 
Sbjct: 282 WTRTFATLSASGVPITSALESVASVSQIRSFQDATLEIRQAVASGGRVSDSMENSRLFPP 341

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +        +    +  G +   L  L+       + K    +  ME      I   +  
Sbjct: 342 ES-----IQMIRIGEESGRMDSMLERLANQYETNLDDKVDTLSTVMEPMIMCIIGILVGV 396

Query: 139 CVSTLVYFTS 148
            +  +     
Sbjct: 397 LIVGMYMPIF 406


>gi|126176389|ref|YP_001052538.1| general secretion pathway protein F [Shewanella baltica OS155]
 gi|152998704|ref|YP_001364385.1| general secretion pathway protein F [Shewanella baltica OS185]
 gi|160873281|ref|YP_001552597.1| general secretion pathway protein F [Shewanella baltica OS195]
 gi|217971368|ref|YP_002356119.1| general secretion pathway protein F [Shewanella baltica OS223]
 gi|125999594|gb|ABN63669.1| general secretion pathway protein F [Shewanella baltica OS155]
 gi|151363322|gb|ABS06322.1| general secretion pathway protein F [Shewanella baltica OS185]
 gi|160858803|gb|ABX47337.1| general secretion pathway protein F [Shewanella baltica OS195]
 gi|217496503|gb|ACK44696.1| general secretion pathway protein F [Shewanella baltica OS223]
 gi|315265508|gb|ADT92361.1| general secretion pathway protein F [Shewanella baltica OS678]
          Length = 407

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 59/173 (34%), Gaps = 8/173 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            +       I   V AGLP+ +++  +  Q   D + S    V      G SL++S++  
Sbjct: 67  AELALITRQIATLVAAGLPIEESLKAVGQQCEKDRLASMIMAVRSRVVEGYSLADSLAEF 126

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G+L   L  L+     R+ +K+K+    +       +
Sbjct: 127 P-----HIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKLTQAMIYPAVLTTV 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML--IGIMVMRLMI 183
              +   +   V     G    +  +        ++A+  +   G+ V+  ++
Sbjct: 182 AIGVISILLAAVVPKVVGQFEHMGAELPASTRFLISASDFVQNYGVFVVIALV 234


>gi|116626772|ref|YP_828928.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229934|gb|ABJ88643.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 312

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 69/158 (43%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +  L+K    K  D  P+ +D++   +  GL +  A+  +  +       + +EF  V+ 
Sbjct: 147 LYRLVKSYRTKLQDALPDTVDLLGIVLGTGLGLDQAMMRVSEEMQFIYPELANEFATVVM 206

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G    +S ++ VR   ++++   S +I    + G +L++AL   +  LR R+ ++A
Sbjct: 207 QVRAGQDRGKSFNQFVRRTGIEDIKSLSAMIIQSEKFGTSLAQALKVYADALRTRRRLRA 266

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +        K    I+  +   +   V    PG ++V+
Sbjct: 267 EAAVGKAGIKMLFPIVVFILPVLF--VITLVPGMLSVM 302


>gi|219853241|ref|YP_002467673.1| type II secretion system protein [Methanosphaerula palustris E1-9c]
 gi|219547500|gb|ACL17950.1| type II secretion system protein [Methanosphaerula palustris E1-9c]
          Length = 644

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 65/170 (38%), Gaps = 3/170 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           ++        P  LD +    + GL ++ A++++V  +   +  E +R+      G + S
Sbjct: 424 RKLGGIESSIPEFLDRMAGINQVGLTMAQAISIMVNANLGVLGYEIKRIKRDMEWGANFS 483

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++ R  R +    ++    +I+  S++ G ++E L   +   R    +K +      E 
Sbjct: 484 EALMRFERRITTPIIARMVVLITKASEMSGQINEVLNIAASDARMSDVLKKER---LGEM 540

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
                I+         +V   S  ++ VL     G +     A   L  I
Sbjct: 541 FIYTAIVYLSFMVFIFVVGVLSSQFLPVLGGIQPGSVSQAGGAFSGLGSI 590


>gi|91225615|ref|ZP_01260689.1| MSHA biogenesis protein MshG [Vibrio alginolyticus 12G01]
 gi|91189735|gb|EAS76009.1| MSHA biogenesis protein MshG [Vibrio alginolyticus 12G01]
          Length = 407

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 53/168 (31%), Gaps = 6/168 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +    +AG+P+  ++  ++    +    E    V+     G  LS ++ +  +   
Sbjct: 71  FSRQLFSLTKAGVPLLRSMRGLLQNCENKQLKEALEDVVSELSNGRGLSSAMQQHSK--- 127

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               S     +    +  G L +AL  L+         + +++A           I    
Sbjct: 128 --VFSPLFVSMINVGENTGRLDQALLQLANYYEQELETRKRIKAAMRYPTFVIIFITIAM 185

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           F ++ LV             +      + +A +   +   V+ ++   
Sbjct: 186 FVLNILVIPEFASMFTRFGVELPLPTRILIATSNFFVNYWVLLVVAMI 233



 Score = 37.8 bits (86), Expect = 0.72,   Method: Composition-based stats.
 Identities = 11/135 (8%), Positives = 37/135 (27%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         +++G+P++ ++A+      +              +  ++    +  
Sbjct: 268 RAQLSRFARTFSLMLKSGVPLNQSLALAGEALGNRFLE-----NRILEMKSAIEAGSTIS 322

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           V  +  +  +     +    +  G + E L  +S       +   K     +E      +
Sbjct: 323 VTAINSKIFTPLVIQMIAVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPLLLVIV 382

Query: 133 IGSLPFCVSTLVYFT 147
            G +      +    
Sbjct: 383 AGMVMVLALGIFLPM 397


>gi|86606612|ref|YP_475375.1| type IV pilus assembly protein PilC [Synechococcus sp. JA-3-3Ab]
 gi|86555154|gb|ABD00112.1| type IV pilus assembly protein PilC [Synechococcus sp. JA-3-3Ab]
          Length = 408

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 51/143 (35%), Gaps = 6/143 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                   + AG+ +  ++ ++  Q+ +  ++   R +      G +LS+SI        
Sbjct: 72  FSRQFAALINAGVSMVRSLTIMEEQTGNPKLKKYLRAIRAEVEAGKNLSDSIRPYPDAFD 131

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    ++GG L E L  L+++L D   ++ ++++          +   + 
Sbjct: 132 G-----LYCSMVQAGEVGGVLDEVLNRLAKLLEDMDRLQKQIKSAMTYPVVVTILAVLIF 186

Query: 138 FCVSTLVYFTSPGYMNVLINDPR 160
             +   +  T     N L  +  
Sbjct: 187 LGMVLFILPTFESIYNDLGGELP 209



 Score = 35.9 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 34/130 (26%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
                    R+G+PV  ++ ++   S + V +             S+SE           
Sbjct: 277 FCRTFGALTRSGVPVLTSLEIVRDTSGNQVVANAIDAARQ-----SISEGGQIAPALDKA 331

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +     +  +    +  G L   L   +           +     +E      + G +  
Sbjct: 332 KVFPIMAIQMISVGEETGELDAMLMKTADFYELEVEEAVRALTSLLEPLMIVILGGMVGC 391

Query: 139 CVSTLVYFTS 148
            +  +     
Sbjct: 392 IIVAMYLPMF 401


>gi|126179944|ref|YP_001047909.1| type II secretion system protein [Methanoculleus marisnigri JR1]
 gi|125862738|gb|ABN57927.1| type II secretion system protein [Methanoculleus marisnigri JR1]
          Length = 349

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 52/153 (33%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +      R +      PN    +     +G+ +  A+ ++       +    R++     
Sbjct: 122 LDFKEAWRVSSVEASLPNFFRDVAGMNDSGMTLPHAIHIVSEGEYGALTPHIRKLDTEMS 181

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+   E+I R  + +          +I+  S  GG++SE L   +    +  N+K + +
Sbjct: 182 WGVPFVEAIRRFGKTVNTPLAERSVDLIAHASSAGGDVSEVLRAAAHDAYEFFNLKTERK 241

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153
              M       +   +   V  ++  T    M 
Sbjct: 242 NGMMIYMIIILMSFFVFLFVIGVLSGTFLTTMA 274


>gi|239817416|ref|YP_002946326.1| type II secretion system protein [Variovorax paradoxus S110]
 gi|239803993|gb|ACS21060.1| type II secretion system protein [Variovorax paradoxus S110]
          Length = 319

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 61/158 (38%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR---SEFRRVIE 57
           +  +   R  +   + P  +D++      GL +  ++ ++    S  +     E      
Sbjct: 156 LGRIAAGRRERIARELPLFVDLLKLLQGVGLSLDQSLQIMADDFSHVLHVLGHELTFANR 215

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   S+ R+      +++    +++    + GG + E L      LR+R+  + 
Sbjct: 216 QYSQGRTREHSLHRLATLHGNEDLRGLVSLLVQVDRHGGAVQEPLRIFGERLRERRRSEM 275

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           K +   +  K +  ++ +L   +  ++    PG++ + 
Sbjct: 276 KERIGKITVKMTGVMVSTLLPAL--VIVTAGPGFIAIF 311


>gi|254486463|ref|ZP_05099668.1| type II secretion system protein [Roseobacter sp. GAI101]
 gi|214043332|gb|EEB83970.1| type II secretion system protein [Roseobacter sp. GAI101]
          Length = 320

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 62/155 (40%), Gaps = 5/155 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQH 60
             K R  +    FP+ L++IV +  AGL    A+  +  +       +  E  +++    
Sbjct: 163 RRKNRLGRIRHSFPDMLELIVITSEAGLGPQPALHRVAQEMSLSHPELAREMLQMVSEMA 222

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +      + ++M   +PL E+  F+  +    + G   S A+  L    R  + M  + +
Sbjct: 223 MTNDCRGAYAKMNLRVPLPEIGIFTQTLDQSDRYGTPFSRAMRTLIIEQRGNRLMAIEEK 282

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           A  +    +  +I  +   V  ++    P  ++VL
Sbjct: 283 AARLPVLMTLPLIFCIMPAVFVVL--VGPAVLSVL 315


>gi|209545602|ref|YP_002277831.1| type II secretion system protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209533279|gb|ACI53216.1| type II secretion system protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 313

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 58/147 (39%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +K +            P+ALD++V    AGLP+  A+  +  +    +  V +EFR   +
Sbjct: 153 VKRMQAHYLRNVDQGIPDALDMLVICAEAGLPIEAAIGRVGREMTAVNRSVANEFRLTAQ 212

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +     +          L  +    + ++   Q G ++++AL  LS  +R     + 
Sbjct: 213 EMGVASDRRDVFLHFGERTNLSSMRRIGSALNQTLQAGSSVTQALRVLSVEMRKDALTEY 272

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +A  +    +  +I  +   V  +V
Sbjct: 273 EARAARLPVLLTLPMILFILPVVFLVV 299


>gi|251796112|ref|YP_003010843.1| type II secretion system protein [Paenibacillus sp. JDR-2]
 gi|247543738|gb|ACT00757.1| type II secretion system protein [Paenibacillus sp. JDR-2]
          Length = 402

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 46/153 (30%), Gaps = 6/153 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                   +RAG+ + +A  ++  Q+   P++     V      G+  S+++    R  P
Sbjct: 68  FCRQFSTLIRAGVTIVEATNILAAQTESKPLKKALVDVSSALLRGIPFSQAVQEHKRIFP 127

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G+L   L  L+         K K+++          +  +  
Sbjct: 128 P-----LFVSMIRAGEETGDLEGTLDRLALFFEKAHTTKEKIKSAMTYPAVVGLMSIASV 182

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             +   V             +      + +A +
Sbjct: 183 IYLLQGVVPQFVTMFESFDTELPAITKIVLALS 215


>gi|153836407|ref|ZP_01989074.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ3810]
 gi|149750309|gb|EDM61054.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ3810]
          Length = 288

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 60/157 (38%), Gaps = 4/157 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +               P  LD++   V  G+ +  ++  +  +      +    V +   
Sbjct: 133 ISSRGNANVRHVSSRLPFLLDLMNVCVHTGMTLEASLDYLSNELKTVDENLAYVVKKTSE 192

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +   + L  +++     +P  E   F   ++   + G ++   LA+L+  +R+   ++ +
Sbjct: 193 RAKIVGLDRALTEFYDLVPTTEAQSFVMTLTQSLKYGSSVGAVLASLASDIREINMLELE 252

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            +   M AK S  +I  +   +  L+    PG M +L
Sbjct: 253 EKIGKMGAKMSIPMIAFIMIPIVVLIAA--PGIMRML 287


>gi|304412648|ref|ZP_07394252.1| general secretion pathway protein F [Shewanella baltica OS183]
 gi|307307258|ref|ZP_07586995.1| general secretion pathway protein F [Shewanella baltica BA175]
 gi|304348992|gb|EFM13406.1| general secretion pathway protein F [Shewanella baltica OS183]
 gi|306910313|gb|EFN40745.1| general secretion pathway protein F [Shewanella baltica BA175]
          Length = 407

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 59/173 (34%), Gaps = 8/173 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            +       I   V AGLP+ +++  +  Q   D + S    V      G SL++S++  
Sbjct: 67  AELALITRQIATLVAAGLPIEESLKAVGQQCEKDRLASMIMAVRSRVVEGYSLADSLAEF 126

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G+L   L  L+     R+ +K+K+    +       +
Sbjct: 127 P-----HIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKLTQAMIYPAVLTTV 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML--IGIMVMRLMI 183
              +   +   V     G    +  +        ++A+  +   G+ V+  ++
Sbjct: 182 AIGVISILLAAVVPKVVGQFEHMGAELPASTRFLISASDFVQNYGVFVVIALV 234


>gi|227819312|ref|YP_002823283.1| TadC pilus assembly protein [Sinorhizobium fredii NGR234]
 gi|227338311|gb|ACP22530.1| TadC pilus assembly protein [Sinorhizobium fredii NGR234]
          Length = 313

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 68/165 (41%), Gaps = 4/165 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +      +  ++   FP+ +D+++  + AG+ +  A   +  +              ++ 
Sbjct: 148 IDRRGSAKEREYRRLFPDFMDMLIVCLDAGMSLEAAANRVAREFVSKRKDFGLHLSIMML 207

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G  L E+++ +   + + E    + +     +LG ++++ L   S+ +RD + ++A
Sbjct: 208 EVRGGRRLREALANLATRLRIDEARSLAVLFRQSEELGTSVTQTLRVYSKEMRDLRIVRA 267

Query: 118 KVQALSMEAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRG 161
           + +A S+  K    +   L P  +  ++       + +++    G
Sbjct: 268 EEKANSLPIKMLLPLGAFLFPVSLVIVLVPIVIRVVGLVVGMSPG 312


>gi|170692559|ref|ZP_02883721.1| type II secretion system protein [Burkholderia graminis C4D1M]
 gi|170142215|gb|EDT10381.1| type II secretion system protein [Burkholderia graminis C4D1M]
          Length = 318

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 67/151 (44%), Gaps = 4/151 (2%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSLSES 68
            ++ FP+ALD++   V AGL +  A+  +  +    S  V +E + ++     G +  ++
Sbjct: 165 IVESFPDALDLLTVCVEAGLGMDAALMRVADEMTLASPEVANELQLMLLELRSGFTKEKA 224

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME-AK 127
           +         +++  F++++    + G ++  +L  +S  LR R+ M+A+ +A  +    
Sbjct: 225 LRNFALRTGAEDIDTFASMLVQAERFGTSIGASLRVMSDTLRTRRRMRAEERAAKIALKL 284

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158
               I    P  ++ L+         VL+  
Sbjct: 285 LFPLIFCIFPALMTVLIGPAFIHIYRVLLPT 315


>gi|254245561|ref|ZP_04938882.1| Flp pilus assembly protein TadC [Burkholderia cenocepacia PC184]
 gi|124870337|gb|EAY62053.1| Flp pilus assembly protein TadC [Burkholderia cenocepacia PC184]
          Length = 330

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 60/158 (37%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           ++     R    +D+ P  +D++      GL +  ++ V+          + SE      
Sbjct: 168 VQRRAASRRQSVVDELPLLVDMLRLLQGVGLSLDQSLQVVTNDFRGMLPVLSSEVGIAQR 227

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+ R+      +++     ++    + GG + E L      LR+ +    
Sbjct: 228 QFAAGRTREQSLQRLSSGFDNEDLRAIVRLMIQVDKHGGAVQEPLKQFGDRLRETRRAML 287

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +   +  K +  ++ +L   +  L+    PG + V+
Sbjct: 288 RERIGRLTVKMTGVMVLTLLPAL--LIVTAGPGMLAVM 323


>gi|91212375|ref|YP_542361.1| type II secretion protein GspF [Escherichia coli UTI89]
 gi|117625267|ref|YP_854405.1| putative type II secretion protein GspF [Escherichia coli APEC O1]
 gi|218560036|ref|YP_002392949.1| General secretion pathway protein F [Escherichia coli S88]
 gi|237706293|ref|ZP_04536774.1| type II secretion protein GspF [Escherichia sp. 3_2_53FAA]
 gi|306816697|ref|ZP_07450829.1| General secretion pathway protein F [Escherichia coli NC101]
 gi|91073949|gb|ABE08830.1| hypothetical type II secretion protein GspF [Escherichia coli
           UTI89]
 gi|115514391|gb|ABJ02466.1| putative type II secretion protein GspF [Escherichia coli APEC O1]
 gi|218366805|emb|CAR04574.1| General secretion pathway protein F [Escherichia coli S88]
 gi|226899333|gb|EEH85592.1| type II secretion protein GspF [Escherichia sp. 3_2_53FAA]
 gi|294491425|gb|ADE90181.1| general secretion pathway protein F [Escherichia coli IHE3034]
 gi|305850262|gb|EFM50721.1| General secretion pathway protein F [Escherichia coli NC101]
 gi|307625437|gb|ADN69741.1| General secretion pathway protein F [Escherichia coli UM146]
 gi|315288715|gb|EFU48113.1| general secretion pathway protein F [Escherichia coli MS 110-3]
 gi|323951517|gb|EGB47392.1| general secretion pathway protein F [Escherichia coli H252]
 gi|323957552|gb|EGB53267.1| general secretion pathway protein F [Escherichia coli H263]
          Length = 407

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 56/169 (33%), Gaps = 8/169 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
             D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+  
Sbjct: 66  TADLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLRE 125

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             R             +    +  G+L   L  L+     R+ +K+++    +       
Sbjct: 126 HPR-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLV 180

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
           +   +   + T V        + L +       ML+ ++ A    G+  
Sbjct: 181 VATGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDALQASGVYW 229


>gi|161504730|ref|YP_001571842.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866077|gb|ABX22700.1| hypothetical protein SARI_02853 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 400

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 58/177 (32%), Gaps = 10/177 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q          R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P          +    +L G L+E    L+R  + ++ +   V+           
Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPA---I 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMINFDV 187
           I+      V  +++F  P +  +  +      LL      +   G     L++   V
Sbjct: 169 IMTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGWLILLLAV 225


>gi|88602462|ref|YP_502640.1| type II secretion system protein [Methanospirillum hungatei JF-1]
 gi|88187924|gb|ABD40921.1| type II secretion system protein [Methanospirillum hungatei JF-1]
          Length = 641

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 68/181 (37%), Gaps = 4/181 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
              ++        P+ LD +      G+ ++ ++AVI   +   +  E  R+      G 
Sbjct: 419 RWNQKIRSLESMIPDFLDRMAGINEVGITLTQSIAVIARANMGVLGYEISRIHRDIEWGA 478

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           + S+++ R    +    ++   T+I+  + +  ++S  L   +   R  +N++   +   
Sbjct: 479 NFSDALIRFEHRVRTALIARTVTLITRAATMSSSISSLLRIAANDARMSENLR---RDRF 535

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI-NDPRGHMLLGVAAAFMLIGIMVMRLM 182
            E      I+    F    ++   +  ++ VL      G  + G  +      ++ M  +
Sbjct: 536 SEMFIYTAIVYLSFFVFIFVIGVITTQFLTVLAEQSKEGLAMAGPLSNLGSTSLITMDRL 595

Query: 183 I 183
           +
Sbjct: 596 L 596


>gi|53804536|ref|YP_113585.1| general secretion pathway protein F [Methylococcus capsulatus str.
           Bath]
 gi|53758297|gb|AAU92588.1| general secretion pathway protein F [Methylococcus capsulatus str.
           Bath]
          Length = 364

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 49/175 (28%), Gaps = 3/175 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L ++R              ++  ++AGLP+  A+  ++   +    +    +     L  
Sbjct: 14  LSRRRNRISQKQIGIFTRELLTLLQAGLPLDRAL-FVLEDLTREDVALNGMIGRVIELVK 72

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
               S             S F   +    + GG L + L  LS  L   K ++  V    
Sbjct: 73  G--GSQLSAALERQEGVFSRFYLNLIRAGEAGGALEDVLERLSDYLERSKELRDTVSTAM 130

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +       +       + T V             +      + V  A +L     
Sbjct: 131 IYPAILLTMSVGSLLLLLTFVVPQFEEMFETAGKELPVPTQIVVGIAELLKNYWW 185


>gi|251788922|ref|YP_003003643.1| general secretion pathway protein F [Dickeya zeae Ech1591]
 gi|247537543|gb|ACT06164.1| general secretion pathway protein F [Dickeya zeae Ech1591]
          Length = 408

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 54/159 (33%), Gaps = 10/159 (6%)

Query: 8   RTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65
           R+ +    D       +   V A LP+ +A+  +  QS    + +    V      G SL
Sbjct: 61  RSHRISASDLALLTRQLATLVAAALPLEEALDAVAKQSEKPKLSALMAAVRAKVVEGHSL 120

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           +E++                  +    +  G+L   L  L+     R+ M++++Q   + 
Sbjct: 121 AEAMGNFP-----GSFERLYCAMVAAGEASGHLDAVLNRLADYTEQRQQMRSRIQQAMIY 175

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
                 +       VS L+    P  +   I+  +   L
Sbjct: 176 P---CVLTLVAISVVSILLSAVVPKVVEQFIHMKQALPL 211


>gi|26246040|ref|NP_752079.1| type IV pilin biogenesis protein [Escherichia coli CFT073]
 gi|227884991|ref|ZP_04002796.1| type IV pilin biogenesis protein [Escherichia coli 83972]
 gi|300938499|ref|ZP_07153239.1| type II secretion system F domain protein [Escherichia coli MS
           21-1]
 gi|300993822|ref|ZP_07180562.1| type II secretion system F domain protein [Escherichia coli MS
           45-1]
 gi|301050002|ref|ZP_07196918.1| type II secretion system F domain protein [Escherichia coli MS
           185-1]
 gi|26106437|gb|AAN78623.1|AE016755_123 Protein transport protein hofC [Escherichia coli CFT073]
 gi|227838129|gb|EEJ48595.1| type IV pilin biogenesis protein [Escherichia coli 83972]
 gi|300298275|gb|EFJ54660.1| type II secretion system F domain protein [Escherichia coli MS
           185-1]
 gi|300406462|gb|EFJ90000.1| type II secretion system F domain protein [Escherichia coli MS
           45-1]
 gi|300456568|gb|EFK20061.1| type II secretion system F domain protein [Escherichia coli MS
           21-1]
 gi|307551950|gb|ADN44725.1| protein transport protein HofC [Escherichia coli ABU 83972]
 gi|315294670|gb|EFU54017.1| type II secretion system F domain protein [Escherichia coli MS
           153-1]
 gi|323190214|gb|EFZ75490.1| bacterial type II secretion system protein F domain protein
           [Escherichia coli RN587/1]
          Length = 400

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 55/181 (30%), Gaps = 22/181 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGVAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +   G +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANKLLM 235

Query: 180 R 180
           R
Sbjct: 236 R 236


>gi|291333682|gb|ADD93371.1| general secretion pathway protein F [uncultured marine bacterium
           MedDCM-OCT-S01-C143]
          Length = 410

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 55/160 (34%), Gaps = 9/160 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           +   A   +   V AG+P+  ++  +V Q      ++ +  V    + G+ + ++++   
Sbjct: 72  ELAVATRQLATLVGAGIPLVQSLTALVDQIEAPRFKAVWADVKTRVNEGVGMGDAMAAYP 131

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R       S     +    +  G L   L  L+     + +++ K+    +       + 
Sbjct: 132 R-----YFSNLYVSMVRAGESSGALEIVLERLADFTESQADLRGKLIGAMIYPMIMVVVA 186

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
            ++   + T+V    P    V  +      L+      + 
Sbjct: 187 IAVVAMLFTVVV---PKIATVFESQKVALPLVTRVLISLS 223


>gi|291562875|emb|CBL41691.1| Type II secretory pathway, component PulF [butyrate-producing
           bacterium SS3/4]
          Length = 346

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 59/192 (30%), Gaps = 14/192 (7%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +KKR     +            V +GL + + + ++    +D    EF          ++
Sbjct: 1   MKKRKKLGAERLSEFFRQFSVLVESGLSIPETLEIMQQDDTD---REFCLACRKLGAFMT 57

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             +++   +           +  +   +++ G L    A L+         + K+++  +
Sbjct: 58  EGKTVGDAMEETGR--FPEPAIQMIRAAEMSGQLVRTTARLAVHYEKEHRTEGKIRSAVL 115

Query: 125 EAKASAWIIGSLPFCVS---------TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
             K    ++  L   V           LV  T P    +L+                 + 
Sbjct: 116 YPKILVLMMIFLMLFVFLEILPTLEPLLVDVTLPLLTRILMGISHFLYAYRYFLPVAAVM 175

Query: 176 IMVMRLMINFDV 187
           I+V   ++   V
Sbjct: 176 ILVGWKILTERV 187



 Score = 35.9 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 42/134 (31%), Gaps = 7/134 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
             + +     +GLP++  +    G   +  +  E R ++     G+ LSE+I        
Sbjct: 215 FCENMSSLYSSGLPITSCLKYTEGTIGNRYLDREIRTIMACVSSGMLLSEAIRESG---- 270

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     + V  +  G+L + L  ++       ++        +E      I     
Sbjct: 271 --GFEKKLAAVIVTGEEAGHLDKMLERIAGSYEHESDLALNKLVNLLEPVMILLIGIFTG 328

Query: 138 FCVSTLVYFTSPGY 151
             +  ++      Y
Sbjct: 329 ILILGIMEPMWNMY 342


>gi|167037482|ref|YP_001665060.1| type II secretion system protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040144|ref|YP_001663129.1| type II secretion system protein [Thermoanaerobacter sp. X514]
 gi|307724537|ref|YP_003904288.1| type II secretion system F domain-containing protein
           [Thermoanaerobacter sp. X513]
 gi|320115896|ref|YP_004186055.1| type II secretion system F domain-containing protein
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166854384|gb|ABY92793.1| type II secretion system protein [Thermoanaerobacter sp. X514]
 gi|166856316|gb|ABY94724.1| type II secretion system protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|307581598|gb|ADN54997.1| Type II secretion system F domain protein [Thermoanaerobacter sp.
           X513]
 gi|319928987|gb|ADV79672.1| Type II secretion system F domain protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 403

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 55/169 (32%), Gaps = 9/169 (5%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSE 67
               + D           + AG+P+  ++  +  Q  +  +++  R V E    G +LS+
Sbjct: 58  KKVKVKDIAVFCRQFATLINAGIPIVTSLVTMREQVENKRLKNALREVYEEVQKGRTLSD 117

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++ R     P+         +    ++ G L + +  ++        +  K+++      
Sbjct: 118 AMKRHSDVFPM-----LLYNMVEVGEVSGTLDKVMNEMAEHYEKENELNQKIKSALTYPV 172

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
               +       V  L+    P ++ +  N      L       +   I
Sbjct: 173 ---IVSIVAILVVIFLLTNVLPIFVGMFENAGVQLPLPTRILLAISGSI 218



 Score = 35.1 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 46/131 (35%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+P+  A+ V+     + V +E  ++  +    GL LSE + R+  + P
Sbjct: 271 FTRTLGTLISAGVPLMKAMEVVEKVVGNTVVAEGLKKAQDDIKKGLPLSEPLKRIGIFPP 330

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         +    +  G+L   L   +       +         +E      +   + 
Sbjct: 331 M------VIQMIGIGESSGSLDSILNKTADFYDGEVDTAVSQMTTLLEPLIIVMLATVVG 384

Query: 138 FCVSTLVYFTS 148
           F V +++    
Sbjct: 385 FIVISIIMPLF 395


>gi|289578260|ref|YP_003476887.1| type II secretion system F domain protein [Thermoanaerobacter
           italicus Ab9]
 gi|289527973|gb|ADD02325.1| Type II secretion system F domain protein [Thermoanaerobacter
           italicus Ab9]
          Length = 402

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 57/161 (35%), Gaps = 11/161 (6%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSL 65
           KR    + D           + AG+P+  A+A +  Q  +  +++  R V E    G SL
Sbjct: 58  KRVK--IKDIAVFCRQFATLINAGIPIVTALATMKEQVENKRLKNALREVYEEVQKGKSL 115

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S+++ +     P+         +    ++ G L + +  ++        +  KV++    
Sbjct: 116 SDAMKKQGDVFPV-----LLYNMVEVGEVSGTLDKVMNEMADHYEKENELNQKVKSALTY 170

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
                 +       V  L+    P ++++  N      L  
Sbjct: 171 PV---IVSFVAVLVVIFLLTNVLPIFVDLFKNAGVQLPLPT 208



 Score = 38.9 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 7/134 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMP 77
               +   + AG+P+  A+ V+     + + SE  R   E    GL LSE + +M  + P
Sbjct: 271 FTRTLGTLISAGIPLIAAMEVVEKVVGNTIVSEGLRKAQEDIKKGLPLSEPLKKMGIFPP 330

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         +    +  G+L   L   +       +         +E      +   + 
Sbjct: 331 M------VIQMISVGESSGSLDSILNKAADFYDGEVDTAVSQMTTLLEPLIIVMLATVVG 384

Query: 138 FCVSTLVYFTSPGY 151
           F V +++      Y
Sbjct: 385 FIVVSIIMPLFQLY 398


>gi|261820714|ref|YP_003258820.1| general secretion pathway protein F [Pectobacterium wasabiae
           WPP163]
 gi|261604727|gb|ACX87213.1| general secretion pathway protein F [Pectobacterium wasabiae
           WPP163]
          Length = 408

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 54/169 (31%), Gaps = 9/169 (5%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLS 64
           +++      D       +   V A LP+ +A+  +  QS    +      V      G S
Sbjct: 60  RRKIRISTSDLALLTRQLATLVAASLPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHS 119

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L++++                  +    +  G+L   L  L+     R+ M++++Q   +
Sbjct: 120 LADAMKCFP-----SSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMI 174

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
                  +       VS L+    P  +   I+  +   L       M 
Sbjct: 175 YP---CVLTVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMS 220


>gi|297180469|gb|ADI16683.1| type II secretory pathway, component pulf [uncultured gamma
           proteobacterium HF0010_05D02]
          Length = 410

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 51/157 (32%), Gaps = 9/157 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73
           +       +   V + LP+ + +     Q+          +V      G +L+ ++++  
Sbjct: 72  ELALITRQLATLVASALPLDECLQAAAEQTRKASTKALLLQVRSKVAEGHTLAHAMAQFP 131

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           +             +    +  G L   L  L+    +R++   K+Q   +       +I
Sbjct: 132 QTFGD-----MYRAMVNAGEQAGQLGPVLDQLADYTENRQHTAQKLQMALIYPF---VLI 183

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           G     V+ L+ F  P  + +          L VA  
Sbjct: 184 GVAIAVVTALMVFVVPEMVGIFAQTKTDLPPLTVALI 220



 Score = 36.3 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 44/142 (30%), Gaps = 7/142 (4%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLS 66
           R      D       +   + +G+P+ DA+ +     ++  +R+  + V      G SL+
Sbjct: 268 RRVLIGMDTARFSSTLSILMASGVPLLDALRIAGAVMNNLVLRAASKEVAAKVQEGSSLN 327

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++S+   + P+         +    +  G L   L   +                  E 
Sbjct: 328 RALSQEAFFPPM------MVHMVASGETSGELETMLERSASNQERELEATLGTVMGLFEP 381

Query: 127 KASAWIIGSLPFCVSTLVYFTS 148
                + G +   V  ++    
Sbjct: 382 VMVVVMGGLVLTIVMAILLPIF 403


>gi|113968763|ref|YP_732556.1| type II secretion system protein [Shewanella sp. MR-4]
 gi|113883447|gb|ABI37499.1| type II secretion system protein [Shewanella sp. MR-4]
          Length = 421

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/166 (10%), Positives = 48/166 (28%), Gaps = 6/166 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMV 73
           D       I   + AG+P+   + ++          E    ++     G+ LS+S+    
Sbjct: 82  DIAMVTRQIATMLAAGVPLVTTIEMLGRGHEKQKMRELLGTILSEVQSGIPLSDSLR--- 138

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +        +    +  G+L      ++      + +K+K++       A   + 
Sbjct: 139 --PHRRYFDDLYVDLVAAGEHSGSLDAVFDRIATYREKAEALKSKIKKAMFYPAAVVVVA 196

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            ++   +   V             +      + V  +  L     +
Sbjct: 197 IAVTTLLLLFVVPQFESIFASFGAELPAFTQMIVGISRFLQSSWYI 242


>gi|325521658|gb|EGD00426.1| general secretion pathway protein F [Burkholderia sp. TJI49]
          Length = 245

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 65/188 (34%), Gaps = 17/188 (9%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +   + +R              +   + AGLP+ +A+ V+  QS  D +R     +    
Sbjct: 3   LGRKLSQREQAI------LTRQLASLLIAGLPLDEALGVLTEQSERDYIRELMAAIRAEV 56

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G SL+ ++S+  R     +       +    +  G L   L+ L   +  R  +K K+
Sbjct: 57  LGGHSLANALSQHPR-----DFPEIYRALVSAGEHTGKLGIVLSRLPGYIEQRNALKQKI 111

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIM 177
                       +       V+ L+ +  P  +NV  +  +   +L +   A    +   
Sbjct: 112 LLAFTYPA---IVTLIAFGIVTFLLSYVVPQVVNVFASTKQQLPILTIVMMALSEFVRHW 168

Query: 178 VMRLMINF 185
              ++I  
Sbjct: 169 WWAILIAV 176


>gi|212717044|ref|ZP_03325172.1| hypothetical protein BIFCAT_01991 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660032|gb|EEB20607.1| hypothetical protein BIFCAT_01991 [Bifidobacterium catenulatum DSM
           16992]
          Length = 258

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 56/163 (34%), Gaps = 1/163 (0%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +  SVR+G+ +  A   + G           R+           E   +  +   ++ +S
Sbjct: 88  LRASVRSGVTLVQAFEELGGTPFATPELTRLRITMVIRSRCPRKEQFGQGGQSGQVERLS 147

Query: 83  -FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                   +   LG      L  ++  L+ ++ +           KA+  ++ +LP    
Sbjct: 148 GELYAACRLSLTLGCETDRCLQAVAESLKRQRLLDDLRANAFAMPKATMKLLMALPLLTV 207

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            L        +  L++  +G   LG A      G++ +R ++ 
Sbjct: 208 LLGEGMGVHSLVFLVSGVKGLACLGFALCCYTFGLIWIRALMR 250


>gi|157147471|ref|YP_001454790.1| type IV pilin biogenesis protein [Citrobacter koseri ATCC BAA-895]
 gi|157084676|gb|ABV14354.1| hypothetical protein CKO_03270 [Citrobacter koseri ATCC BAA-895]
          Length = 400

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/172 (11%), Positives = 45/172 (26%), Gaps = 4/172 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +     +  +   ++AGL +S+ + ++ GQ          + +           +     
Sbjct: 58  EQSAEIVHQLATLLKAGLTLSEGLTLLAGQHPSRQWQALLQTLAHNLEQG----APLSSA 113

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                Q        +    +L G L E    L+R    +K +  KV+           + 
Sbjct: 114 LAQWPQVFPPLYQAMIRTGELTGKLDECCFELARQQNAQKQLADKVKKALRYPIIILTMA 173

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             + F +   V                      +  A        +  ++  
Sbjct: 174 VMVVFAMLHFVLPEFAAIYRTFNTPLPALTQGIITLAQWSAQWGWLMALLGI 225


>gi|311280235|ref|YP_003942466.1| general secretion pathway protein F [Enterobacter cloacae SCF1]
 gi|308749430|gb|ADO49182.1| general secretion pathway protein F [Enterobacter cloacae SCF1]
          Length = 400

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 56/169 (33%), Gaps = 14/169 (8%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74
                  +   V A LP+  A+  I  QS D  + +    + +    G +L+E+  +  R
Sbjct: 63  LTLFTRQLSTLVNAALPLESALKAISRQSEDKKLSALVSDIRDKVVEGHTLNEAFGQFPR 122

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                        + +  +  G L + L  L+     R+ MK+++    +       +  
Sbjct: 123 I-----FDKLYCTLVMAGEKSGALGQVLEKLADYNEQRQKMKSQLSQAMVYPIT---LTV 174

Query: 135 SLPFCVSTLVYFTSPGYMNVLIND-----PRGHMLLGVAAAFMLIGIMV 178
                +  L+    P  ++   +           L+ V+      G+ +
Sbjct: 175 VAIAVIGILLVAVVPQVIDQFTHMKQQLPITTRTLIAVSDFLQAWGLYI 223


>gi|198284409|ref|YP_002220730.1| type II secretion system protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218665047|ref|YP_002427077.1| tight adherence protein TadC [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198248930|gb|ACH84523.1| type II secretion system protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218517260|gb|ACK77846.1| tight adherence protein TadC [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 312

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 61/146 (41%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           ++   K R      + P  +D++      GL +  ++A +   S      +  E R + +
Sbjct: 150 LESKAKSRGDAVNAEIPFFVDMLALLQGVGLSLEQSLASLAQTSEAGIPLLAGEMREMGK 209

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G    E++ ++   +   +      ++    + GG++++ L + +  L++++ M  
Sbjct: 210 HIAIGRPRVEAMQKLAEQLGDPDFEELVNMLRQIERFGGDVAQPLRDFAGRLQEKRQMAL 269

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +   +  K +A +  ++   +  +
Sbjct: 270 RERVGKLNVKMTAVMTLTMLPALLLI 295


>gi|324119772|gb|EGC13652.1| general secretion pathway protein F [Escherichia coli E1167]
          Length = 407

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +        L+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQASGVYW 229


>gi|70730126|ref|YP_259865.1| general secretion pathway protein F [Pseudomonas fluorescens Pf-5]
 gi|68344425|gb|AAY92031.1| general secretion pathway protein F [Pseudomonas fluorescens Pf-5]
          Length = 403

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 61/183 (33%), Gaps = 18/183 (9%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66
           R     +D   A   +   + A LP+  A++  V Q+    +      V      G+ L+
Sbjct: 58  RPRLSDNDLAWATRQLASLLGASLPLEAALSATVEQAERKHIAQTLSAVRADVRSGMRLA 117

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E+++   R     +       +    +  G+L++ +  L+  + +R  ++ K+    +  
Sbjct: 118 EALAARPR-----DFPEIYRALIAAGEESGDLAQVMERLADYIEERNGLRGKILTAFIYP 172

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL------------GVAAAFMLI 174
                +   +   + + V        +    D  G  L             G+  A M+ 
Sbjct: 173 GVVGLVSIGIVIFLLSYVVPQVVSAFSQARQDLPGLTLAMLNASDFIRAWGGLCFAAMVA 232

Query: 175 GIM 177
           G  
Sbjct: 233 GFW 235



 Score = 35.1 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 15/129 (11%), Positives = 34/129 (26%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+  A+       S+   S+             + E  +        
Sbjct: 272 FASTLAILGSAGVPLLRALEAARQTLSNDRLSQSV-----SEATAKVREGANLAAALRVE 326

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +        +    +  G L   L   ++ L      +A      +E      + G +  
Sbjct: 327 KVFPPVLIHLIASGEKTGALPPMLERAAQTLSRDIERRAMGMTALLEPLMIVVMGGVVLV 386

Query: 139 CVSTLVYFT 147
            V  ++   
Sbjct: 387 IVMAVLLPI 395


>gi|260775593|ref|ZP_05884490.1| MSHA biogenesis protein MshG [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608774|gb|EEX34939.1| MSHA biogenesis protein MshG [Vibrio coralliilyticus ATCC BAA-450]
          Length = 406

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/165 (11%), Positives = 47/165 (28%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
           +        +    +AG+P+  ++  +    ++  ++     V +    G SLS      
Sbjct: 66  EVLVIFCRQLYSLTKAGVPLLRSMKGLTQNSANKQLKQALEEVTQELTNGRSLS-----A 120

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              M  +  S     +    +  G L +AL  L+         + +++            
Sbjct: 121 SMQMHSKVFSPLFVSMINVGENTGRLDQALMQLANYYEQEVETRKRIKTAMRYPTFVISF 180

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           I    F ++  V             D      + +  +   +   
Sbjct: 181 IVVALFVLNVKVIPQFASMFARFGVDLPLPTRILITTSEFFVNYW 225



 Score = 41.3 bits (95), Expect = 0.066,   Method: Composition-based stats.
 Identities = 12/135 (8%), Positives = 34/135 (25%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         ++AG+P++ ++A+      +              +  S+    +  
Sbjct: 268 RAQLSRFSRTFALMLKAGVPLNQSLALSAEALENKYLE-----NRLLEMKSSIEAGGTIS 322

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 Q  +     +    +  G + E L   +       +   K     +E      +
Sbjct: 323 TTASNSQVFTPLVLQMLSVGEETGRIDELLLEAADFYDREVDYDLKTLTARIEPILLVVV 382

Query: 133 IGSLPFCVSTLVYFT 147
            G +      +    
Sbjct: 383 AGMVLILALGIFLPM 397


>gi|242277878|ref|YP_002990007.1| type II secretion system protein [Desulfovibrio salexigens DSM
           2638]
 gi|242120772|gb|ACS78468.1| type II secretion system protein [Desulfovibrio salexigens DSM
           2638]
          Length = 408

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/167 (11%), Positives = 54/167 (32%), Gaps = 6/167 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRM 72
               +        + + LP+  A++ +  Q+   +  E    +      G+ LS +++  
Sbjct: 69  KQITSFTRQFATLLGSSLPLVRALSFLRDQNEGTLLGEVIGTINSRVREGMPLSRALAEY 128

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +             +    + GG L +A+  L+ +   ++++++KV    +        
Sbjct: 129 PK-----YFDILYVSLVAAGETGGMLDQAMDRLAFMREAQEDLRSKVSGAMIYPAIMFIA 183

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +      +  LV        + +         L +  +  L     +
Sbjct: 184 MVGAIITMMLLVVPRFAQMFSSMGQKLPIATRLLIDISDTLQQTWWL 230



 Score = 37.8 bits (86), Expect = 0.74,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 39/138 (28%), Gaps = 7/138 (5%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70
                      +   + +G+P+  A+    G + +  V     +       G  L+  + 
Sbjct: 270 IQVSMARWCRTLGTLIGSGVPLLTALQSSAGVTGNVAVSKVVEKATAEVREGSKLATPLK 329

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
                 P      + T +    +  G+L   L  ++       +   K     +E     
Sbjct: 330 ESGIIPP------YVTEMISMGEESGSLDSMLEKIAEHYEREVDQLVKNLTSLLEPVMIL 383

Query: 131 WIIGSLPFCVSTLVYFTS 148
            +   + F V  ++    
Sbjct: 384 VMGAVVGFIVMAILLPVF 401


>gi|187478773|ref|YP_786797.1| pilus assembly protein [Bordetella avium 197N]
 gi|115423359|emb|CAJ49893.1| putative pilus assembly protein [Bordetella avium 197N]
          Length = 283

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 1/147 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQ 59
           +   I+    +   D P  LD++   + AG  + +A+ +         + +  R+ +   
Sbjct: 127 LGARIRLNRVRVAADLPFLLDVMTLCLEAGQGMVNAMYLAARHCPPGLLTTALRQALNEM 186

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G S  E++  M   + +  V  +   ++   +LGG     L  L+  LR+    +A+ 
Sbjct: 187 RAGRSQREALLAMAARLDVAGVHAWVAALTQADRLGGGAGGVLRALASQLREEAFQRAEE 246

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146
            A+    K    ++  +  C   ++ F
Sbjct: 247 AAMRAPVKMLFPLVTCMFPCTFLILAF 273


>gi|237801182|ref|ZP_04589643.1| general secretion pathway protein F [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331024039|gb|EGI04096.1| general secretion pathway protein F [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 228

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
               +    +   + AG P+  ++ +++ Q      ++   R+ E    G  LS ++   
Sbjct: 62  AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEE 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    S     +    + GG L   L  LS  L   + ++ +V    +      ++
Sbjct: 122 GTQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +  +   ++ L+ +  P ++ +  +   G  +  +    + +G  +
Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILDLGQFL 217


>gi|320197443|gb|EFW72057.1| Type IV fimbrial assembly protein PilC [Escherichia coli WV_060327]
          Length = 400

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 55/181 (30%), Gaps = 22/181 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGVAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +   G +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANKLLM 235

Query: 180 R 180
           R
Sbjct: 236 R 236


>gi|89074157|ref|ZP_01160656.1| putative Type IV pilin biogenesis protein [Photobacterium sp.
           SKA34]
 gi|89050093|gb|EAR55619.1| putative Type IV pilin biogenesis protein [Photobacterium sp.
           SKA34]
          Length = 407

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 48/175 (27%), Gaps = 4/175 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
             L K R     +D       +   + +G+PV  A+ ++    +        R    Q  
Sbjct: 55  SFLTKIRDQMKGEDVTVVTRQLATMIESGVPVVQALQLMASSYN----KAEMRATLLQIT 110

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
               S +               F   +    +  G+L +  A ++      + M+ KV  
Sbjct: 111 TQVESGASLSSAMRSSSPLFDKFFCDLVATGEQTGHLGQVFARIAVYREKNEAMRKKVIK 170

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
             +           +   +   V        +    +      + V A+  LI  
Sbjct: 171 AMIYPAMVTLTAVLVTVLMLVFVIPQFAQIFSSFGAELPLFTQIVVHASDFLIAY 225


>gi|307354769|ref|YP_003895820.1| type II secretion system F domain-containing protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307158002|gb|ADN37382.1| Type II secretion system F domain protein [Methanoplanus
           petrolearius DSM 11571]
          Length = 463

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 66/202 (32%), Gaps = 22/202 (10%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ + KKR  +    F   L  +   +R GL    +V  +       +    R       
Sbjct: 142 LQKMAKKRKEEL---FTEFLFKLSEMMRGGLDPIKSVNELAKAEIGVLTPHIRIAANRMA 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S   ++  M R    + ++ ++ ++   S  GG +S+ +   S  +R   +++ + +
Sbjct: 199 YGDSFERAMKAMARSTGSELIARYTELVIEASYSGGGVSDLILKCSDDMRSILSIERQKE 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL---------------INDPRGHMLL 165
               +     +    +   +   +      Y   L                +    H++L
Sbjct: 259 GDLKQFVLIFYFAQIIIIFICYTLTNDLLPYFTDLGSTSFLGDNEIANMDFSTGFFHLIL 318

Query: 166 GVAAAFMLIGIMVMRLMINFDV 187
                    G +++  +   DV
Sbjct: 319 ----INSFFGGLIIGKISEGDV 336


>gi|153822239|ref|ZP_01974906.1| type IV pilus assembly protein TapC [Vibrio cholerae B33]
 gi|126520249|gb|EAZ77472.1| type IV pilus assembly protein TapC [Vibrio cholerae B33]
          Length = 364

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 49/149 (32%), Gaps = 6/149 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   +  G+P+  A+ ++        ++S   ++ ++   G  LS+++  
Sbjct: 67  SKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRT 126

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              +            +    ++ GNL E    L+      + ++AKV    +       
Sbjct: 127 ASAH-----FDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVL 181

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
           +   + + + T+V             +  
Sbjct: 182 VALGVSYLMLTMVIPEFESMFKGFGAELP 210


>gi|110640317|ref|YP_668045.1| type IV pilin biogenesis protein [Escherichia coli 536]
 gi|215485270|ref|YP_002327701.1| type IV pilin biogenesis protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|300984526|ref|ZP_07177018.1| type II secretion system F domain protein [Escherichia coli MS
           200-1]
 gi|312966234|ref|ZP_07780460.1| bacterial type II secretion system F domain protein [Escherichia
           coli 2362-75]
 gi|331645215|ref|ZP_08346326.1| protein transport protein HofC [Escherichia coli M605]
 gi|331661150|ref|ZP_08362082.1| protein transport protein HofC [Escherichia coli TA206]
 gi|110341909|gb|ABG68146.1| bacterial type II secretion system protein F [Escherichia coli 536]
 gi|215263342|emb|CAS07657.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli O127:H6 str. E2348/69]
 gi|281177324|dbj|BAI53654.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|300306695|gb|EFJ61215.1| type II secretion system F domain protein [Escherichia coli MS
           200-1]
 gi|312289477|gb|EFR17371.1| bacterial type II secretion system F domain protein [Escherichia
           coli 2362-75]
 gi|315299995|gb|EFU59233.1| type II secretion system F domain protein [Escherichia coli MS
           16-3]
 gi|324012267|gb|EGB81486.1| type II secretion system F domain protein [Escherichia coli MS
           60-1]
 gi|330909949|gb|EGH38459.1| type 4 fimbrial assembly protein PilC [Escherichia coli AA86]
 gi|331045972|gb|EGI18091.1| protein transport protein HofC [Escherichia coli M605]
 gi|331052192|gb|EGI24231.1| protein transport protein HofC [Escherichia coli TA206]
          Length = 400

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 55/181 (30%), Gaps = 22/181 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGVAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +   G +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANKLLM 235

Query: 180 R 180
           R
Sbjct: 236 R 236


>gi|254229262|ref|ZP_04922680.1| bacterial type II secretion system protein F domain [Vibrio sp.
           Ex25]
 gi|262393145|ref|YP_003284999.1| MSHA biogenesis protein MshG [Vibrio sp. Ex25]
 gi|151938186|gb|EDN57026.1| bacterial type II secretion system protein F domain [Vibrio sp.
           Ex25]
 gi|262336739|gb|ACY50534.1| MSHA biogenesis protein MshG [Vibrio sp. Ex25]
          Length = 407

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 53/168 (31%), Gaps = 6/168 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +    +AG+P+  ++  ++    +    E    V+     G  LS ++ +  +   
Sbjct: 71  FSRQLFSLTKAGVPLLRSMRGLLQNCENKQLKEALEDVVSELSNGRGLSSAMQQHSK--- 127

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               S     +    +  G L +AL  L+         + +++A           I    
Sbjct: 128 --VFSPLFVSMINVGENTGRLDQALLQLANYYEQELETRKRIKAAMRYPTFVIIFITIAM 185

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           F ++ LV             +      + +A +   +   V+ ++   
Sbjct: 186 FILNILVIPEFASMFTRFGVELPLPTRILIATSNFFVNYWVLLIVAMI 233



 Score = 37.4 bits (85), Expect = 0.81,   Method: Composition-based stats.
 Identities = 11/135 (8%), Positives = 37/135 (27%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         +++G+P++ ++A+      +              +  ++    +  
Sbjct: 268 RAQLSRFARTFSLMLKSGVPLNQSLALAGEALGNRFLE-----NRILEMKSAIEAGSTIS 322

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           V  +  +  +     +    +  G + E L  +S       +   K     +E      +
Sbjct: 323 VTAINSKIFTPLVIQMIAVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPLLLVIV 382

Query: 133 IGSLPFCVSTLVYFT 147
            G +      +    
Sbjct: 383 AGMVMVLALGIFLPM 397


>gi|291442507|ref|ZP_06581897.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
 gi|291345402|gb|EFE72358.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
          Length = 285

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 63/174 (36%), Gaps = 3/174 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +        +   +R G+ +  A+      + D +  +   + +   LG    E++    
Sbjct: 74  EALSEWTQRLAGLLRLGMGLEQAMITSRKGAPDALAEQITGLSDRLRLGWRPEEALRAFA 133

Query: 74  RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +        +  + +     G  L++AL +L+  +R+    K  ++A   + + +   
Sbjct: 134 DELDDVTADKVTAALILSVNDRGPGLAQALEDLAGTVREEVAKKRGIEADRAKPRTTVRW 193

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           +  +   V     F  P Y     +   G ++LG   A  +  + +MR +  F 
Sbjct: 194 MTFITVGVVVA-GFFVPSYTAP-YSTLLGQLVLGFLTAGFVATLALMRQLGAFR 245


>gi|297544540|ref|YP_003676842.1| Type II secretion system F domain-containing protein
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842315|gb|ADH60831.1| Type II secretion system F domain protein [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 403

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 57/161 (35%), Gaps = 11/161 (6%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSL 65
           KR    + D           + AG+P+  A+A +  Q  +  +++  R V E    G SL
Sbjct: 58  KRVK--IKDIAVFCRQFATLINAGIPIVTALATMKEQVENKRLKNALREVYEEVQKGKSL 115

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S+++ +     P+         +    ++ G L + +  ++        +  KV++    
Sbjct: 116 SDAMKKQGDVFPV-----LLYNMVEVGEVSGTLDKVMNEMADHYEKENELNQKVKSALTY 170

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
                 +       V  L+    P ++++  N      L  
Sbjct: 171 PV---IVSFVAVLVVIFLLTNVLPIFVDLFKNAGVQLPLPT 208



 Score = 38.6 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMP 77
               +   + AG+P+  A+ V+     + + SE  R   E    GL LSE + +M  + P
Sbjct: 271 FTRTLGTLISAGIPLIAAMEVVEKVVGNTIVSEGLRKAQEDIKKGLPLSEPLKKMGIFPP 330

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         +    +  G+L   L   +       +         +E      +   + 
Sbjct: 331 M------VIQMISVGESSGSLDSILNKAADFYDGEVDTAVSQMTTLLEPLIIVMLAIVVG 384

Query: 138 FCVSTLVYFTS 148
           F V +++    
Sbjct: 385 FIVVSIIMPLF 395


>gi|269104071|ref|ZP_06156768.1| MSHA biogenesis protein MshG [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163969|gb|EEZ42465.1| MSHA biogenesis protein MshG [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 405

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/162 (9%), Positives = 43/162 (26%), Gaps = 4/162 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                  +    +AG+P+  A+  +   +S P+  E    +       S       +   
Sbjct: 66  LVIFCRQLYSLTKAGIPLLRAIKGLAQSTSHPLLRETLEAVIADLTNGSP----LSVSMK 121

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
              +  +     +    +  G L  +L  L+         + ++ +           IG 
Sbjct: 122 QHPRVFTPLFVSMINVGENTGRLDSSLLQLANYYEQEMETRRQIASAMRYPMFVLTSIGL 181

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
               ++  V        +    +      + +  +   +   
Sbjct: 182 AMVVLNIKVIPQFASMFSRFGMELPLPTRILIGTSNFFVHYW 223



 Score = 39.7 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/135 (8%), Positives = 32/135 (23%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         +RAG+P++ A+ +      +              +   +    S  
Sbjct: 266 RAQMARFSRTFALMIRAGVPLNTALQMSAEALGNRYLE-----NRLIEMKSGIEGGASIA 320

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +           +    +  G + + L  ++       +   K     +E      +
Sbjct: 321 STAVSSGIFPPLVLQMIAVGEETGQVDDLLMEVADFYDREVDYDLKTLTARIEPILLLVV 380

Query: 133 IGSLPFCVSTLVYFT 147
            G +      +    
Sbjct: 381 AGMVLLLALGIFLPM 395


>gi|193067501|ref|ZP_03048469.1| general secretion pathway protein GspF [Escherichia coli E110019]
 gi|192959458|gb|EDV89893.1| general secretion pathway protein GspF [Escherichia coli E110019]
          Length = 407

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +        L+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQASGVYW 229


>gi|209546004|ref|YP_002277894.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209538861|gb|ACI58794.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 300

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 67/153 (43%), Gaps = 4/153 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLG 62
            ++ R  +   +FP  LD++V + +A   + +++ +    +   V   E  + ++   LG
Sbjct: 146 KMQDRKERISREFPYFLDLVVMTQQAQATLPESLRLYAEAAPGTVMSEEIDQTLKDVALG 205

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             + E++ R+ R M  +EV      +      G N  E L   +R LR R   + +    
Sbjct: 206 TGMVEALQRLERRMTAEEVIRVIRAVIQGEVEGSNRVELLREHARDLRFR---RWEKADR 262

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + E   +  ++ ++   VS L+   +P  + ++
Sbjct: 263 ASEKLKAKIVMPAMMIVVSILLLVLAPAIVEMM 295


>gi|300309698|ref|YP_003773790.1| type II secretion system protein [Herbaspirillum seropedicae SmR1]
 gi|300072483|gb|ADJ61882.1| bacterial type II secretion system protein [Herbaspirillum
           seropedicae SmR1]
          Length = 415

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/167 (10%), Positives = 43/167 (25%), Gaps = 4/167 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             + R              +   ++AGLP+  A+ + +  +           I       
Sbjct: 66  ARRGRRRITDKQIVLFTRQLATMLQAGLPLLQALDIAIRGAGADALGGLLATIRQDVARG 125

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
                          Q        +   ++  G L   LA ++        ++ KV+A  
Sbjct: 126 D----SLHAALARHPQRFDALFCQLVRAAESAGVLDSMLARIASYREKSLALRGKVRAAL 181

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
               A   +  ++   +   V             +      + ++ A
Sbjct: 182 AYPCAVVLVAVAVTVVIMLWVVPAFEQMFRHFGAELPLPTRIVMSLA 228


>gi|239995643|ref|ZP_04716167.1| general secretion pathway protein F [Alteromonas macleodii ATCC
           27126]
          Length = 408

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 61/178 (34%), Gaps = 14/178 (7%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V + LPV +A+  +  Q      ++    V      G  L++++ +  
Sbjct: 69  DLALLTRQLATLVESALPVEEALLAVAEQCEKPRQKNMMMAVRSKVVEGHGLADALGQFP 128

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G+L   L  L+     R+  ++++    +      +  
Sbjct: 129 -----SVFDELYRAMVAAGEKSGHLDTVLNRLADYTERRQQTRSQITQAMIYPSLMLFFA 183

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA--------AFMLIGIMVMRLMI 183
             +   + T+V     G  + +  D  G     ++          FMLIGI V+ ++I
Sbjct: 184 MGIVLLLLTVVVPKIVGQFDHMGQDLPGITQFLISISTWLQNYGLFMLIGIAVLVVII 241


>gi|261339185|ref|ZP_05967043.1| hypothetical protein ENTCAN_05411 [Enterobacter cancerogenus ATCC
           35316]
 gi|288319032|gb|EFC57970.1| general secretion pathway protein F [Enterobacter cancerogenus ATCC
           35316]
          Length = 402

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 52/150 (34%), Gaps = 9/150 (6%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74
                  +   V A LP+  A+  I  Q+ D  + +    + E    G +L ++ S+  R
Sbjct: 65  LSMFTRQLSTLVNAALPLESALKAISKQTEDKKLAAMVVEIREKVVEGHTLFDAFSQFPR 124

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                        + +  +  G+L + L  L+     R+ MK+K+    +       +  
Sbjct: 125 T-----FDKLYCTLVMAGEKTGHLGDVLEKLAEYNEQRQKMKSKLTQAMVYPIT---LTV 176

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
                +S L+    P  +    +  +   +
Sbjct: 177 VAIAVISILLVAVVPQVIEQFTHMKQQLPI 206


>gi|169627575|ref|YP_001701224.1| hypothetical protein MAB_0471 [Mycobacterium abscessus ATCC 19977]
 gi|169239542|emb|CAM60570.1| Conserved hypothetical transmembrane protein [Mycobacterium
           abscessus]
          Length = 258

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 2/164 (1%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           LD++V  +R G     A  +   + +      F  +     LG+++  ++ R        
Sbjct: 92  LDVVVGELRVGAHPVRAFEIAAVELNGAAGEAFAAIAARARLGVNVDRALPRS--VPARA 149

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
           + +  +   S+  + G  +++ L      L++R+   A+V A     +A+A ++  LP  
Sbjct: 150 QWNRITRSWSLAQRHGLAVADLLDACRADLQERQQFTARVNAGLAGPRATAVVLTGLPVA 209

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
              L        ++VL     G  LL V       G++    + 
Sbjct: 210 GIGLGQMIGARPLSVLCAGGVGGALLVVGVTLACAGLLWADAIT 253


>gi|326318665|ref|YP_004236337.1| general secretion pathway protein F [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375501|gb|ADX47770.1| general secretion pathway protein F [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 411

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 9/159 (5%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVR 74
                  +   V +GLP+  A+  +  +S D  +      +    + G + + +++   R
Sbjct: 74  LAVWTRQLAGLVSSGLPLERALTALADESDDDRQRHLVATLRAEVNAGSTFARALTAHPR 133

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                E S     +    +  G+L   L  L+  L +R+ +KAK+   S+       I  
Sbjct: 134 -----EFSSIYCAVIGAGESSGHLGLVLERLADDLEERQALKAKLIGASLYPAIVTVIAI 188

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
                V  LV +  P    V     R    L VA   + 
Sbjct: 189 V---IVLFLVGYVVPQVAAVFAGSKRALPFLTVAMMALS 224



 Score = 36.6 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+        +          +     G  L+ ++++  R+  
Sbjct: 280 FTGTLSMLAGAGVPILKALQAAAETLGNTAMRADALDALVLVREGAPLASALAQKKRFPG 339

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                   ++ +   +  G L   L   +  L      +A   A  +E      +   + 
Sbjct: 340 ------LVSMFARLGEQTGQLPLMLQRAAAQLSAEVQRRAMQLATILEPLLIVAMGVIVM 393

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 394 LIVLAVLMPI 403


>gi|11498266|ref|NP_069492.1| hypothetical protein AF0658 [Archaeoglobus fulgidus DSM 4304]
 gi|2649961|gb|AAB90583.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 614

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/141 (12%), Positives = 53/141 (37%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
             +   K   + P  +  +     AGL V +A+  +       +  E R++      G  
Sbjct: 400 KNRLLTKMEKELPEFMKQLASLNEAGLNVVEALRHLSESELGVLGREIRKIKREVEWGEL 459

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           ++ ++ ++   +  Q V+   T++    +   ++ +AL   S        ++ +++A   
Sbjct: 460 ITSALEKIESRVRSQIVAKAITLLVKAIESTPSIRDALNTASMYSELEVEVRDRIKAQMS 519

Query: 125 EAKASAWIIGSLPFCVSTLVY 145
                 ++  ++    + ++ 
Sbjct: 520 MYTIIIYLAFAVFLYTAYILI 540



 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 67/180 (37%), Gaps = 7/180 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHLGL-S 64
           R  K     P+A+++++   + G+P+      +    +    +  EF +++    +    
Sbjct: 118 RRGKIDSSLPHAVNMMLGMAKGGVPLISIFRFVAENREIFGEISREFDKIVTLVEIFGYD 177

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  +    P +++  F        + GG++ E L   S  L   +     +   ++
Sbjct: 178 MITAMKYVADTTPSEKLKVFLENFINVYEGGGDVVEYLRAKSEQLLTERETYYTLFFETL 237

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +  A  ++   +   +  L+       +  ++          V  A + +G +++  +I 
Sbjct: 238 QVYAEIYLALFIVAPLFFLIVLV----VFQMVGSGAMQTFKIVLFAMIPLGSLLLMWLIK 293


>gi|307721764|ref|YP_003892904.1| Flp pilus assembly protein TadB [Sulfurimonas autotrophica DSM
           16294]
 gi|306979857|gb|ADN09892.1| Flp pilus assembly protein TadB [Sulfurimonas autotrophica DSM
           16294]
          Length = 311

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 81/186 (43%), Gaps = 1/186 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ +I+ R  KF      A+ ++V+ ++ G+    A++  V  S   +  +       + 
Sbjct: 124 LQSVIQNRKKKFNKALAVAISVLVKMMKNGIGFEQALSKSVSVSGSKLFRDIFEKFFQEK 183

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
             +   E+ S + +++  +E+  F+  I +  + GG  S  L  + + +  R+ M+ KV 
Sbjct: 184 NTIGEMEAFSNLNQFVHSKELRIFALAIKIGRESGGQFSNTLEKVEKTINYREKMQEKVD 243

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM-NVLINDPRGHMLLGVAAAFMLIGIMVM 179
            ++ E    ++++  +   +   +     G + +  +    G   L   + ++  GIM+ 
Sbjct: 244 VVTREGSVGSYVVVLITIFLYFALNGNFDGKLHHYFMESQYGRFQLLGISLWVFTGIMIN 303

Query: 180 RLMINF 185
           +++   
Sbjct: 304 KMLTKV 309


>gi|124515782|gb|EAY57291.1| putative general secretion pathway protein F [Leptospirillum
           rubarum]
 gi|206602161|gb|EDZ38643.1| Putative general secretion pathway protein F [Leptospirillum sp.
           Group II '5-way CG']
          Length = 400

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 59/184 (32%), Gaps = 14/184 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQ 59
           ++    +R AK   D       +   V +G+PV +++  I+ Q   DP+ S    + E  
Sbjct: 51  LRQTGGRRRAK-AGDIALFTRQMGILVGSGIPVVESLGAILDQGLPDPMGSTVAAIREDV 109

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G  L +++S   R       S     +    +  G L   L  LS  L  +   + KV
Sbjct: 110 KEGQPLHQALSLHPRI-----FSDLYVNMIRAGEESGTLDVMLDRLSDFLEKQVETRRKV 164

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI--- 176
                       +   +   V  L+    P    +         L  +    +  G+   
Sbjct: 165 LGSLFYPLILMMVGILM---VIFLLTVVMPRITAIFKGLNAALPLPTILLMDLSDGLRQE 221

Query: 177 -MVM 179
              +
Sbjct: 222 AFWI 225



 Score = 41.6 bits (96), Expect = 0.048,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 43/137 (31%), Gaps = 7/137 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAV-IVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
            D        +   ++ G+P+  A+ +     ++  ++    +  E    G SL  ++ R
Sbjct: 263 QDQISRFGRTLSVLLKGGVPLQRALEIGTSVLTNQTLKDAAIKAREDVRNGESLGSALKR 322

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                    V   +  +    +  G L E L  ++       +         +E     +
Sbjct: 323 ------SPWVPRMAVHMIQTGEKSGKLEELLLKMAEGYESEVSQTVATLTSIIEPVMILF 376

Query: 132 IIGSLPFCVSTLVYFTS 148
           I   + F V  ++    
Sbjct: 377 IGCIVLFMVLAVLLPIF 393


>gi|294813377|ref|ZP_06772020.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064]
 gi|326441910|ref|ZP_08216644.1| type II secretion system F protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294325976|gb|EFG07619.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064]
          Length = 295

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 62/162 (38%), Gaps = 1/162 (0%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   +RAG+    A+    G +   + +    V      G  +  ++    R      ++
Sbjct: 124 VAAELRAGIQPGPALLSAAGATDA-LGTAGAPVGAAARFGGDVPRALREAAREPGADGLA 182

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
             +    V    G  L+ AL  L   LR  ++ + +++A    A+A+  ++  LP     
Sbjct: 183 GVAACWRVAVDGGAGLAAALDRLEEALRADRDQREELRAQLAGARATVGLLALLPVVALA 242

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + +      + VL++ P G + L +  A    G+     ++ 
Sbjct: 243 MGWALGADPLRVLLHTPAGLLCLLLGGALEAAGLWWAARIVR 284


>gi|226355746|ref|YP_002785486.1| Type 4 pilus assembly protein PilC [Deinococcus deserti VCD115]
 gi|226317736|gb|ACO45732.1| putative Type 4 pilus assembly protein PilC [Deinococcus deserti
           VCD115]
          Length = 406

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/163 (11%), Positives = 54/163 (33%), Gaps = 6/163 (3%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
            +   + AG+P+  ++A++  Q      +   + +      G+ LSE+I++  +      
Sbjct: 74  QLATLINAGVPLVQSLAILQKQIEHKGFQKVVKDLRGDVESGIPLSEAIAKYPKI----- 128

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
                  +    +  G L   L  ++        ++ K+++              + + +
Sbjct: 129 FDRLYVNLIRAGETSGTLDAILERIASFQEKDLALRGKIKSAMTYPVIVLIFALGITYFL 188

Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            T +       +  L         + +A +  L     +  ++
Sbjct: 189 LTTIVPQFGMILVQLNAPLPFITKMLMAVSDFLKSSTWVIALV 231


>gi|15838119|ref|NP_298807.1| general secretory pathway protein F [Xylella fastidiosa 9a5c]
 gi|9106552|gb|AAF84327.1|AE003981_9 general secretory pathway protein F [Xylella fastidiosa 9a5c]
          Length = 405

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 58/173 (33%), Gaps = 7/173 (4%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVR 74
             +    +   + AG P+  A++++     +   R     V +    G  LS ++ R   
Sbjct: 68  LIHFTQQLAALLGAGQPLDRALSILTDLPDNEKSRRIIGDVCDIVRGGTPLSIALER--- 124

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                  S     ++   + GGN+ E L  L+  L   + ++AKV    +      +++G
Sbjct: 125 --QHGVFSRLYVTMARAGESGGNMPETLQRLADYLERNQVVRAKVINALIYPVILIFVVG 182

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
                +   V          L +        GV A    IG     L+    +
Sbjct: 183 GALAFLLGYVVPQFGAMYESL-DVALPWFTQGVLALGHFIGDWWFLLLAVIGI 234


>gi|315656392|ref|ZP_07909281.1| type II secretion system protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492951|gb|EFU82553.1| type II secretion system protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 303

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 52/146 (35%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R  +   + P+ ++++  +V AG P+  A+  +  + +     E  +++    
Sbjct: 150 LTGAARRRQLRLNQELPDVIELLALAVGAGEPLYGALHRVSARCAGVAGQELEKILAAAD 209

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ S++        + ++     I    + G  L+  L +     R     +   +
Sbjct: 210 NGDSLAPSLTAARARNDSEILAHLIDAIVSALERGSPLAGVLRSQVADSRAVARTQLLTE 269

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146
               E      ++  +         +
Sbjct: 270 GGKKEVLMMVPVVFLILPLTVVFALY 295


>gi|284922986|emb|CBG36078.1| type II secretion system protein F [Escherichia coli 042]
          Length = 407

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +       ML+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDALQASGVYW 229


>gi|206578970|ref|YP_002240369.1| pullulanase secretion protein PulF [Klebsiella pneumoniae 342]
 gi|206568028|gb|ACI09804.1| pullulanase secretion protein PulF [Klebsiella pneumoniae 342]
          Length = 404

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 41/143 (28%), Gaps = 7/143 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           D       +   V AG+P+  A+  +  Q          R +        L         
Sbjct: 65  DLALLTRQLATLVAAGIPLEKALDAVAQQCE----KAPLRTLMAGVRSKVLEGHSLAEAM 120

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                        +    +  G+L   L  L+     R+ ++A++Q   +       +  
Sbjct: 121 RGYPACFDGLFCAMVAAGETSGHLDGVLNRLADYTEQRQQLRARLQQAMIYPI---VLTL 177

Query: 135 SLPFCVSTLVYFTSPGYMNVLIN 157
                ++ L+    P  +   ++
Sbjct: 178 VAISVIAILLSTVVPKVVEQFVH 200


>gi|50122030|ref|YP_051197.1| general secretion pathway protein F [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612556|emb|CAG76006.1| general secretion pathway protein F [Pectobacterium atrosepticum
           SCRI1043]
          Length = 408

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 54/169 (31%), Gaps = 9/169 (5%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLS 64
           +++      D       +   V A LP+ +A+  +  QS    +      V      G S
Sbjct: 60  RRKIRISTSDLALLTRQLATLVAASLPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHS 119

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L++++                  +    +  G+L   L  L+     R+ M++++Q   +
Sbjct: 120 LADAMKCFP-----SSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMI 174

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
                  +       VS L+    P  +   I+  +   L       M 
Sbjct: 175 YP---CVLTVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMS 220


>gi|330819179|ref|YP_004348041.1| type II secretion system protein [Burkholderia gladioli BSR3]
 gi|327371174|gb|AEA62529.1| type II secretion system protein [Burkholderia gladioli BSR3]
          Length = 293

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 1/136 (0%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESIS 70
                P  LD +  +V AGL ++ A+   V +     +RSEF  V+     GL+ ++++ 
Sbjct: 146 IRKQLPVYLDFLTLAVEAGLNINGAIQKAVEKGPDGALRSEFEHVLRDLKSGLNRADALR 205

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           R      ++E++ F   +    ++G  L+  L   S   R  +  +A+  A+    K   
Sbjct: 206 RFDERQDIKEITNFVGAVIQAERMGSGLAGTLRFQSEQRRAERFQRAEKLAMEAPVKLVF 265

Query: 131 WIIGSLPFCVSTLVYF 146
            ++  +      ++ F
Sbjct: 266 PLMMFIFPVTFVVLGF 281


>gi|315655694|ref|ZP_07908592.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333]
 gi|315489758|gb|EFU79385.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333]
          Length = 303

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 53/146 (36%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R  +   + P+ ++++  +V AG P+  A+  +  + +D    E  +++    
Sbjct: 150 LTGAARRRQLRLNQELPDVIELLALAVGAGEPLYGALHRVSARCTDVAGQELEKILAAAD 209

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ S++        + ++     I    + G  L+  L +     R     +   +
Sbjct: 210 NGDSLAPSLTAARARNDSEILAHLIDAIVSALERGSPLASVLRSQVADSRAVARTQLLTE 269

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146
               E      ++  +         +
Sbjct: 270 GGKKEVLMMVPVVFLILPLTVVFAMY 295


>gi|300914228|ref|ZP_07131544.1| Type II secretion system F domain protein [Thermoanaerobacter sp.
           X561]
 gi|300889163|gb|EFK84309.1| Type II secretion system F domain protein [Thermoanaerobacter sp.
           X561]
          Length = 403

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 55/169 (32%), Gaps = 9/169 (5%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSE 67
               + D           + AG+P+  ++  +  Q  +  +++  R V E    G +LS+
Sbjct: 58  KKVKVKDIAVFCRQFATLINAGIPIVTSLVTMREQVENKRLKNALREVYEEVKKGRTLSD 117

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++ R     P+         +    ++ G L + +  ++        +  K+++      
Sbjct: 118 AMKRHSDVFPM-----LLYNMVEVGEVSGTLDKVMNEMAEHYEKENELNQKIKSALTYPV 172

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
               +       V  L+    P ++ +  N      L       +   I
Sbjct: 173 ---IVSIVAILVVIFLLTNVLPIFVGMFENAGVQLPLPTRILLAISGSI 218



 Score = 35.1 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 46/131 (35%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+P+  A+ V+     + V +E  ++  +    GL LSE + R+  + P
Sbjct: 271 FTRTLGTLISAGVPLMKAMEVVEKVVGNTVVAEGLKKAQDDIKKGLPLSEPLKRIGIFPP 330

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         +    +  G+L   L   +       +         +E      +   + 
Sbjct: 331 M------VIQMIGIGESSGSLDSILNKTADFYDGEVDTAVSQMTTLLEPLIIVMLATVVG 384

Query: 138 FCVSTLVYFTS 148
           F V +++    
Sbjct: 385 FIVISIIMPLF 395


>gi|59712794|ref|YP_205570.1| pilus assembly protein PilC [Vibrio fischeri ES114]
 gi|59480895|gb|AAW86682.1| pilus assembly protein PilC [Vibrio fischeri ES114]
 gi|83338469|gb|ABC11894.1| PilC [Vibrio fischeri ES114]
          Length = 412

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 58/169 (34%), Gaps = 14/169 (8%)

Query: 1   MKHLIKKRTAKFLD--------DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSE 51
           +K + K+  + F          D       +   + +G+PV  ++ +I    +   ++S 
Sbjct: 51  IKKIKKRSISSFEKMKHAVKRKDITLFTRQLSTMLASGVPVVQSLHLIAENNTKAEMKSI 110

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111
             +V  +   G  LS+++S             F   +    +  G+L++A A L+     
Sbjct: 111 LHQVCLSIEAGTQLSKALS-----TSCSHFDSFYIDLIATGEETGSLAQAFARLAEYREK 165

Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
              +++KV    +       +  ++   + T V             +  
Sbjct: 166 SDALRSKVIKAMIYPTMVFLVAITVTILMLTFVIPEFENIFKGFGAELP 214



 Score = 42.0 bits (97), Expect = 0.039,   Method: Composition-based stats.
 Identities = 11/135 (8%), Positives = 36/135 (26%), Gaps = 5/135 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                    +  S  +GLP+  ++      + +    E    ++             R  
Sbjct: 276 AAIAKFSRTLATSFSSGLPILHSLQTTSKTAGNLYYQEAILSVQQHTAAGMPLYIAMR-- 333

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +        + +  +  G L + L  ++ +  +  +         +E     ++ 
Sbjct: 334 ---HTEVFPEMVLQMVMIGEESGKLDDMLNKIAHVYEEDVDNTVDNLGKILEPFIIVFLG 390

Query: 134 GSLPFCVSTLVYFTS 148
             +   V ++     
Sbjct: 391 TMIGGLVVSMYLPIF 405


>gi|306815298|ref|ZP_07449447.1| type IV pilin biogenesis protein [Escherichia coli NC101]
 gi|222031935|emb|CAP74673.1| Protein transport protein hofC [Escherichia coli LF82]
 gi|305850960|gb|EFM51415.1| type IV pilin biogenesis protein [Escherichia coli NC101]
 gi|312944710|gb|ADR25537.1| type IV pilin biogenesis protein [Escherichia coli O83:H1 str. NRG
           857C]
 gi|324008339|gb|EGB77558.1| type II secretion system F domain protein [Escherichia coli MS
           57-2]
          Length = 400

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 57/181 (31%), Gaps = 22/181 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPCKQWQALLQSLAHDLEQGVAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +   G +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANKLLM 235

Query: 180 R 180
           R
Sbjct: 236 R 236


>gi|261251593|ref|ZP_05944167.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio orientalis CIP 102891]
 gi|260938466|gb|EEX94454.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio orientalis CIP 102891]
          Length = 284

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 56/141 (39%), Gaps = 3/141 (2%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSL 65
             +   + P+ALD++V  V +G  +      +  +    S  +  E+        +  S 
Sbjct: 131 RQEIAKNIPDALDLMVVCVSSGQSLEATFNTVGQEMKSISPSLSREWLVTATEMAVLDSP 190

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             +++ +   + L EV+     +S   + G  +++AL  ++   R    ++ +     + 
Sbjct: 191 QVALTNLDTRLALPEVNNMIVTMSQALKFGTPMADALKLIASDNRQYHMLELEEWVGKIP 250

Query: 126 AKASAWIIGSLPFCVSTLVYF 146
           AK S  ++  +   V  ++  
Sbjct: 251 AKMSFPLVVLIMLPVVVIIVA 271


>gi|325498533|gb|EGC96392.1| General secretion pathway protein F [Escherichia fergusonii ECD227]
          Length = 407

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 53/167 (31%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS          V+      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMVLRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +        L+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRALIAMSDALQTSGVYW 229


>gi|229514051|ref|ZP_04403513.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae TMA 21]
 gi|254291779|ref|ZP_04962564.1| type IV pilin biogenesis protein PilC [Vibrio cholerae AM-19226]
 gi|150422291|gb|EDN14253.1| type IV pilin biogenesis protein PilC [Vibrio cholerae AM-19226]
 gi|229349232|gb|EEO14189.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae TMA 21]
          Length = 408

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 49/149 (32%), Gaps = 6/149 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   +  G+P+  A+ ++        ++S   ++ ++   G  LS+++  
Sbjct: 67  SKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRT 126

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              +            +    ++ GNL E    L+      + ++AKV    +       
Sbjct: 127 ASAH-----FDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVL 181

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
           +   + + + T+V             +  
Sbjct: 182 VALGVSYLMLTMVIPEFESMFKGFGAELP 210



 Score = 37.0 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/131 (9%), Positives = 35/131 (26%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +  S  AG+P+  ++      S +         V      G+ +  ++        
Sbjct: 277 FSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVHRDTAAGMPMYIAMRN------ 330

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     + +  +  G L + L  ++ I     +         +E     ++   + 
Sbjct: 331 TDAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVG 390

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 391 GLVVAMYLPIF 401


>gi|308178277|ref|YP_003917683.1| hypothetical protein AARI_24950 [Arthrobacter arilaitensis Re117]
 gi|307745740|emb|CBT76712.1| hypothetical membrane protein [Arthrobacter arilaitensis Re117]
          Length = 224

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/166 (10%), Positives = 53/166 (31%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            +  +   +R+GL    A+  ++    +  +             L+ S      +     
Sbjct: 51  VIRELSALLRSGLSFYPAIDALLDAEEEHGKIVGALKELQATHRLNNSAPRGDALDGNQS 110

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
             V      + + ++ G +L++ L  L+  L +    +    A     KA+  ++  LP 
Sbjct: 111 PAVQRLHWCLELSARSGASLADVLERLAEDLENALVAQQAFDAAMAGPKATIKLLTWLPL 170

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                        +  + +     + + + A   +   +  + ++ 
Sbjct: 171 VGFGFGMLLGIDVLGTIASSWAAQLSVLIGAVLWIANRIWCQRLMR 216


>gi|301048229|ref|ZP_07195264.1| general secretion pathway protein F [Escherichia coli MS 185-1]
 gi|300299923|gb|EFJ56308.1| general secretion pathway protein F [Escherichia coli MS 185-1]
 gi|315297665|gb|EFU56942.1| general secretion pathway protein F [Escherichia coli MS 16-3]
 gi|324005478|gb|EGB74697.1| general secretion pathway protein F [Escherichia coli MS 57-2]
          Length = 407

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +       ML+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDALQASGVYW 229


>gi|218691253|ref|YP_002399465.1| General secretion pathway protein F [Escherichia coli ED1a]
 gi|218428817|emb|CAR09761.2| General secretion pathway protein F [Escherichia coli ED1a]
          Length = 407

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +       ML+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDALQASGVYW 229


>gi|193222352|emb|CAL62101.2| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein
           MshG (pilus type IV) [Herminiimonas arsenicoxydans]
          Length = 409

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/170 (11%), Positives = 50/170 (29%), Gaps = 6/170 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           +              +   ++AG+P+   +A +   +   +   F  V++     L  + 
Sbjct: 64  KIRSIDVQL--FSRQLYTLLKAGVPIMRGLAGLQESA---INKSFGLVVKDLRESLD-AG 117

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
                      +  S F T +    ++ G L E    L   L   ++M+ +++       
Sbjct: 118 RELSAAMRRHPKVFSPFYTNMVRVGEMTGRLEEVFLRLFDYLEFDRDMRQRIRTALRYPI 177

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
                +      ++  V  T          +      L +  +  ++   
Sbjct: 178 FVVSALTVAMIVINLFVIPTFAKVYAGFKAELPFMTKLLIGTSNFMVQYW 227



 Score = 37.0 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/132 (6%), Positives = 35/132 (26%), Gaps = 5/132 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                     S ++G+P+   + V+     +            + +   +    S +   
Sbjct: 273 LARFARSFALSSKSGVPIVQGLNVVAQTVGNTY-----IASRIEQMRDGVERGESILRTA 327

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
           +     +     +    +  G L   +  ++ +     + + K  +  +E      +   
Sbjct: 328 VTTGVFTPVVLQMIAIGEETGELDSLMDEIAAMYEREVDYELKTLSAQIEPILIIGLGIL 387

Query: 136 LPFCVSTLVYFT 147
           +      +    
Sbjct: 388 VVVLALGVFLPI 399


>gi|327484917|gb|AEA79324.1| Type IV fimbrial assembly protein PilC [Vibrio cholerae LMA3894-4]
          Length = 408

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 49/149 (32%), Gaps = 6/149 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   +  G+P+  A+ ++        ++S   ++ ++   G  LS+++  
Sbjct: 67  SKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILTQITKSVEAGTPLSKAMRT 126

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              +            +    ++ GNL E    L+      + ++AKV    +       
Sbjct: 127 ASAH-----FDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVL 181

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
           +   + + + T+V             +  
Sbjct: 182 VALGVSYLMLTMVIPEFESMFKGFGAELP 210



 Score = 36.6 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/131 (9%), Positives = 35/131 (26%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +  S  AG+P+  ++      S +         V      G+ +  ++        
Sbjct: 277 FSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAAGMPMYIAMRN------ 330

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     + +  +  G L + L  ++ I     +         +E     ++   + 
Sbjct: 331 TDAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVG 390

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 391 GLVVAMYLPIF 401


>gi|153802801|ref|ZP_01957387.1| type IV pilin biogenesis protein PilC [Vibrio cholerae MZO-3]
 gi|124121666|gb|EAY40409.1| type IV pilin biogenesis protein PilC [Vibrio cholerae MZO-3]
          Length = 408

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 49/149 (32%), Gaps = 6/149 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   +  G+P+  A+ ++        ++S   ++ ++   G  LS+++  
Sbjct: 67  SKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRT 126

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              +            +    ++ GNL E    L+      + ++AKV    +       
Sbjct: 127 ASAH-----FDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVL 181

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
           +   + + + T+V             +  
Sbjct: 182 VALGVSYLMLTMVIPEFESMFKGFGAELP 210



 Score = 37.0 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/131 (9%), Positives = 36/131 (27%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +  S  AG+P+  ++      S +         V      G+ +  ++        
Sbjct: 277 FSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVHRDTAAGMPMYIAMRN------ 330

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +        + +  +  G L + L  ++ I     +         +E     ++   + 
Sbjct: 331 TEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVG 390

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 391 GLVVAMYLPIF 401


>gi|153214072|ref|ZP_01949206.1| type IV pilin biogenesis protein PilC [Vibrio cholerae 1587]
 gi|153830647|ref|ZP_01983314.1| type IV pilin biogenesis protein PilC [Vibrio cholerae 623-39]
 gi|229527031|ref|ZP_04416426.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae 12129(1)]
 gi|124115498|gb|EAY34318.1| type IV pilin biogenesis protein PilC [Vibrio cholerae 1587]
 gi|148873856|gb|EDL71991.1| type IV pilin biogenesis protein PilC [Vibrio cholerae 623-39]
 gi|229335428|gb|EEO00910.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae 12129(1)]
          Length = 408

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 49/149 (32%), Gaps = 6/149 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   +  G+P+  A+ ++        ++S   ++ ++   G  LS+++  
Sbjct: 67  SKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRT 126

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              +            +    ++ GNL E    L+      + ++AKV    +       
Sbjct: 127 ASAH-----FDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVL 181

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
           +   + + + T+V             +  
Sbjct: 182 VALGVSYLMLTMVIPEFESMFKGFGAELP 210



 Score = 36.6 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/131 (9%), Positives = 35/131 (26%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +  S  AG+P+  ++      S +         V      G+ +  ++        
Sbjct: 277 FSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAAGMPMYIAMRN------ 330

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     + +  +  G L + L  ++ I     +         +E     ++   + 
Sbjct: 331 TDAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVG 390

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 391 GLVVAMYLPIF 401


>gi|330862289|emb|CBX72450.1| hypothetical protein YEW_HH31820 [Yersinia enterocolitica W22703]
          Length = 203

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 59/147 (40%), Gaps = 2/147 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +K+++ KRT   L   P  +DI    V++G+ + ++++    +           +++   
Sbjct: 46  VKNIVAKRTKSLLRSLPFFIDITAACVQSGMTIDNSLSYSAKKFELINADLSLIMLKVTR 105

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +     L  +I    +     E+  F + +      G  + E L  LS+ +R+ + +  +
Sbjct: 106 RAEINGLENAIKEFNQSSTELEIRMFCSALQYSISFGATVYEQLIKLSKDMREMQLLVTE 165

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVY 145
            +   + AK +  +   +      LV 
Sbjct: 166 EKISKLTAKLTIPLFLFILIPFIVLVI 192


>gi|104783622|ref|YP_610120.1| type IV fimbrial assembly protein [Pseudomonas entomophila L48]
 gi|95112609|emb|CAK17337.1| type IV fimbrial assembly protein [Pseudomonas entomophila L48]
          Length = 402

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 55/174 (31%), Gaps = 19/174 (10%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           P     +   + AG+P+  A  V+   +    +     R+ +    GL L+E++ R    
Sbjct: 66  PGFSRQLATLLTAGVPLLQAFEVMARSTVDSGMAVLLARLKQDVAAGLGLAEALQRHPA- 124

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                       +    +  G L   L  ++ +L  R+ ++ KV+   +           
Sbjct: 125 ----WFDALYCNLVRVGEQSGTLDRQLEQMAGMLEKRQALRQKVRKAMLYPAVLLLTGLG 180

Query: 136 LPFCVSTLVYFTSPGYMNVL-------------INDPRGHMLLGVAAAFMLIGI 176
           +   +   V     G                  ++   G+ L  +     ++GI
Sbjct: 181 VAALLLLEVVPRFQGLFASFDKALPAFTQWVIDLSTGLGNHLGWLVLLITVLGI 234



 Score = 34.7 bits (78), Expect = 5.4,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 36/136 (26%), Gaps = 5/136 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                     +  S  AG+ + DA+A +    S     E   +   QH+    S   +  
Sbjct: 266 QAALARFARSLATSYAAGVALLDALATVAP-VSGNCLHERAILALRQHVANGASLQQAME 324

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +           +    +  G L   L   +    ++ +   +     +E      +
Sbjct: 325 ADGLFPP----LLRQLVAVGEASGTLDTMLDKAALHYEEQVSQALEQLTTLLEPAIVLIL 380

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V  +     
Sbjct: 381 GLLVGGLVVAMYLPIF 396


>gi|77918004|ref|YP_355819.1| general secretory pathway protein F [Pelobacter carbinolicus DSM
           2380]
 gi|77544087|gb|ABA87649.1| general secretory pathway protein F [Pelobacter carbinolicus DSM
           2380]
          Length = 408

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/176 (11%), Positives = 53/176 (30%), Gaps = 7/176 (3%)

Query: 10  AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSE 67
            +   +D       +    +AG+P+  A+  +   +  P+ +E    V++    G  LS 
Sbjct: 62  RRIEPEDLILFCRQMYSLTKAGVPLLRALRGMTESACKPIMAETLLAVLDDLESGHDLSS 121

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++ R  +  P          +    +  G L ++   ++  L   K    +++A      
Sbjct: 122 ALRRHSKVFPP-----LLVNMIQVGESSGRLDDSFNEVATYLIREKQTADQIKAALRYPS 176

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
                I      ++  V                    + +  +   +      L+ 
Sbjct: 177 FVLVAISIAIAIITLFVIPAFEKLFKSQGAQLPLPTRIILGISNFAVSWWWAILIA 232


>gi|168264008|ref|ZP_02685981.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205347510|gb|EDZ34141.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 400

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q          R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAQQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P          +    +L G L+E    L+R  + ++ +   V+           
Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPV---I 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183
           I+      V  +++F  P +  +  +      LL      +   G     L++
Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYCSFNTPLPLLTRGIIAIAQWGSAWGWLIL 221


>gi|56412416|ref|YP_149491.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197361352|ref|YP_002140987.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56126673|gb|AAV76179.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197092827|emb|CAR58253.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 400

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q          R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P          +    +L G L+E    L+R  + ++ +   V+           
Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPV---I 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183
           I+      V  +++F  P +  +  +      LL      +   G     L++
Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGWLIL 221


>gi|71906519|ref|YP_284106.1| type II secretion system protein [Dechloromonas aromatica RCB]
 gi|71846140|gb|AAZ45636.1| type II secretion system protein [Dechloromonas aromatica RCB]
          Length = 406

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 6/160 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMP 77
               +   +++G+P+  A++ +   +++    E  R V E+   G  LS S++R  +   
Sbjct: 70  FSRQLHTLLKSGVPIMRALSGLQESATNQAMREVIRDVRESLEAGRELSVSLARHPK--- 126

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               + F   +    +  G L E    L   L   + M+ +V++           +    
Sbjct: 127 --VFNSFYISMVRVGEATGLLDEIFLRLFEHLEFERYMREQVKSALRYPMFVVIAMAVAI 184

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
             V+  V             +      + +  +  ++   
Sbjct: 185 VVVNIFVIPAFAKVFQGFGAELPLMTRILLGFSDFMVAWW 224


>gi|84385699|ref|ZP_00988730.1| putative TadC [Vibrio splendidus 12B01]
 gi|84379679|gb|EAP96531.1| putative TadC [Vibrio splendidus 12B01]
          Length = 290

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 63/157 (40%), Gaps = 4/157 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIET 58
           +    K   +      P  LD++   V  G+ +  ++  +  +    D   +   +    
Sbjct: 135 IASRGKSNISHISSRLPFLLDLMNVCVHTGMTLEASLEYLSNELKMVDENLAFVVQTTSE 194

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +   + L +++S     +P  E   F   ++   + G ++   LA+L+  +R+   ++ +
Sbjct: 195 RAKVVGLDKALSEFYDLVPTTEAQSFVMTLTQSLKYGSSVGAVLASLASDIREINMLELE 254

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            +   M AK S  +I  +   +  L+    PG M +L
Sbjct: 255 EKIGKMGAKMSVPMIAFIMIPIVILIAA--PGIMRML 289


>gi|254228552|ref|ZP_04921977.1| general secretion pathway protein F [Vibrio sp. Ex25]
 gi|262392664|ref|YP_003284518.1| general secretion pathway protein F [Vibrio sp. Ex25]
 gi|151938934|gb|EDN57767.1| general secretion pathway protein F [Vibrio sp. Ex25]
 gi|262336258|gb|ACY50053.1| general secretion pathway protein F [Vibrio sp. Ex25]
          Length = 405

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/162 (12%), Positives = 53/162 (32%), Gaps = 6/162 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
             +       +   V++G+P+ + +  +  Q+    +RS    V      G  L++S + 
Sbjct: 64  TSELALITRQLSTLVQSGMPLEECLRAVSEQAEKPRIRSMLAAVRSKVTEGYPLADSFAD 123

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    +  G+L   L  L+  + +R+ M++K+    +       
Sbjct: 124 YP-----HVFDELYRSMVAAGEKSGHLDTVLERLADYVENRQKMRSKLLQAMIYPVVLVV 178

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
               +   +   V       +  +  +        +AA+  +
Sbjct: 179 FAVVIVSFLLATVVPKIIEPIIQMGQELPQSTQFLLAASEFV 220


>gi|302539257|ref|ZP_07291599.1| integral membrane protein [Streptomyces sp. C]
 gi|302448152|gb|EFL19968.1| integral membrane protein [Streptomyces sp. C]
          Length = 305

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/179 (12%), Positives = 58/179 (32%), Gaps = 4/179 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             ++R  +        L+ +     AG+ +   +      +  P+ +  R + E    G+
Sbjct: 104 AAEQRIERLE-AIGQWLNGLAGIHTAGISLVQTIRASARNAPAPIAANVRALDERLRSGM 162

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQS-QLGGNLSEALANLSRILRDRKNMKAKVQAL 122
              ++ +     +    V   + +    +  +G  LS AL  L+  +  +      +++ 
Sbjct: 163 DSKQAFALFADELGDGVVDHVALLFQSHAANMGPGLSTALEALAVTIHQQAADARDIESD 222

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
             + + S+ I+          V        +     P G + L +        +  +R 
Sbjct: 223 RAKIRKSSRIVSI--VICIVFVGCMLNEAWSAWYQSPAGQLALAILGGLFAWTLSWLRR 279


>gi|222034683|emb|CAP77425.1| hypothetical type II secretion proteinGspF [Escherichia coli LF82]
 gi|312947521|gb|ADR28348.1| General secretion pathway protein F [Escherichia coli O83:H1 str.
           NRG 857C]
          Length = 407

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +       ML+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDALQASGVYW 229


>gi|209920434|ref|YP_002294518.1| putative type II secretion protein [Escherichia coli SE11]
 gi|209913693|dbj|BAG78767.1| putative type II secretion protein [Escherichia coli SE11]
          Length = 407

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 54/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSNSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +        L+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQASGVYW 229


>gi|156975928|ref|YP_001446835.1| hypothetical protein VIBHAR_03694 [Vibrio harveyi ATCC BAA-1116]
 gi|156527522|gb|ABU72608.1| hypothetical protein VIBHAR_03694 [Vibrio harveyi ATCC BAA-1116]
          Length = 407

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 51/168 (30%), Gaps = 8/168 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +    +AG+P+  ++  ++    +    E    V+     G  LS +         
Sbjct: 71  FSRQLFSLTKAGVPLLRSMRGLLQNCENKQLKEALEEVVAELSNGRGLSSA-----MQPH 125

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +  S     +    +  G L +AL  L+         + +++A           I    
Sbjct: 126 TKVFSPLFVSMINVGENTGRLDQALLQLANYYEQELETRKRIKAAMRYPTFVIVFITIAM 185

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM--VMRLMI 183
           F ++ LV             +      + +A +   +     ++  +I
Sbjct: 186 FILNILVIPEFASMFTRFGVELPLPTRILIATSSFFVNYWGLLIAAII 233



 Score = 37.4 bits (85), Expect = 0.81,   Method: Composition-based stats.
 Identities = 11/135 (8%), Positives = 37/135 (27%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         +++G+P++ ++A+      +              +  ++    +  
Sbjct: 268 RAQLSRFARTFSLMLKSGVPLNQSLALAGEALGNKFLE-----NRILEMKAAIEAGSTIS 322

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           V  +  +  +     +    +  G + E L  +S       +   K     +E      +
Sbjct: 323 VTAINSKIFTPLVIQMIAVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPLLLVIV 382

Query: 133 IGSLPFCVSTLVYFT 147
            G +      +    
Sbjct: 383 AGMVMVLALGIFLPM 397


>gi|120612613|ref|YP_972291.1| general secretion pathway protein F [Acidovorax citrulli AAC00-1]
 gi|120591077|gb|ABM34517.1| general secretion pathway protein F [Acidovorax citrulli AAC00-1]
          Length = 411

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 53/164 (32%), Gaps = 6/164 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVR 74
                  +   V +GLP+  A+  +  +S D  +      +    + G + + +++   R
Sbjct: 74  LAVWTRQLAGLVSSGLPLERALTALADESDDDRQRHLVATLRAEVNAGSTFARALTAHPR 133

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                E S     +    +  G+L   L  L+  L +R+ +KAK+   S+       I  
Sbjct: 134 -----EFSSIYCAVIGAGESSGHLGLVLERLADDLEERQALKAKLIGASLYPAIVTVIAI 188

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            +   +   V                   +  +A +  +     
Sbjct: 189 VIVLFLVGYVVPQVAAVFAGSKRALPFLTVAMMALSDAVRSYGW 232



 Score = 36.6 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+        +          +     G  L+ ++++  R+  
Sbjct: 280 FTGTLSMLAGAGVPILKALQAAAETLGNTAMRADALDALVLVREGAPLASALAQKKRFPG 339

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                   ++ +   +  G L   L   +  L      +A   A  +E      +   + 
Sbjct: 340 ------PVSMFARLGEQTGQLPLMLQRAAAQLSAEVQRRAMQLATILEPLLIVAMGVIVM 393

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 394 LIVLAVLMPI 403


>gi|330465092|ref|YP_004402835.1| type ii secretion system f domain-containing protein
           [Verrucosispora maris AB-18-032]
 gi|328808063|gb|AEB42235.1| type ii secretion system f domain protein [Verrucosispora maris
           AB-18-032]
          Length = 301

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/180 (10%), Positives = 58/180 (32%), Gaps = 3/180 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             ++R    ++        +      G  +  A+   VG + + ++ E R +      G 
Sbjct: 104 RAEQRAIARIEAVGEWTRRLKDVSATGQGLQQAIIGTVGTAPEEIQDEVRLLAARLQAGW 163

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQS-QLGGNLSEALANLSRILRDRKNMKAKVQAL 122
               ++      +           + +     G  L + L +++         + +++A 
Sbjct: 164 LARSALLAFADEIGDPVCDQVVAALILHLTDRGERLGDVLGSIASAAAAEVTTRREIEAK 223

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
             + + +   +  +         F +  Y+      P G +++ +  A  +  +  +R M
Sbjct: 224 RTQPRFAVRFLTGMTLATIAYGLF-NAEYVQP-YGTPFGQLVMALLGAAFVGLLAWVRSM 281


>gi|328758435|gb|EGF72051.1| hypothetical protein HMPREF9563_00343 [Propionibacterium acnes
           HL020PA1]
          Length = 256

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 60/171 (35%), Gaps = 5/171 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            +   A   +   V  G   S A+  +             +    Q +G S+S+++    
Sbjct: 83  REVARATRALAGRVSVGEIPSVALEHVADDVE-----VLAQARRAQAVGGSVSDALIATS 137

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R   +  +   +    + +  G  L+ A  +++     R  ++A + +    A+AS  I+
Sbjct: 138 RQPGMAGLVPLAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIM 197

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           G LP     + +      M  L     G   L  +     +G++    + +
Sbjct: 198 GLLPLVGLLMGHVVGAHPMVFLTTTWLGRACLLGSTLLACVGVLWSESLAD 248


>gi|254226637|ref|ZP_04920217.1| type IV pilin biogenesis protein PilC [Vibrio cholerae V51]
 gi|297581049|ref|ZP_06942974.1| type IV pilin biogenesis protein PilC [Vibrio cholerae RC385]
 gi|125620856|gb|EAZ49210.1| type IV pilin biogenesis protein PilC [Vibrio cholerae V51]
 gi|297534875|gb|EFH73711.1| type IV pilin biogenesis protein PilC [Vibrio cholerae RC385]
          Length = 408

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 49/148 (33%), Gaps = 6/148 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +  G+P+  A+ ++        ++S   ++ ++   G  LS+++   
Sbjct: 68  KDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTA 127

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +            +    ++ GNL E    L+      + ++AKV    +       +
Sbjct: 128 SAH-----FDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLV 182

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR 160
              + + + T+V             +  
Sbjct: 183 ALGVSYLMLTMVIPEFESMFKGFGAELP 210



 Score = 37.0 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/131 (9%), Positives = 36/131 (27%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +  S  AG+P+  ++      S +         V      G+ +  ++        
Sbjct: 277 FSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAAGMPMYIAMRN------ 330

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +        + +  +  G L + L  ++ I     +         +E     ++   + 
Sbjct: 331 TEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVG 390

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 391 GLVVAMYLPIF 401


>gi|323960853|gb|EGB56473.1| general secretion pathway protein F [Escherichia coli H489]
          Length = 407

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +       ML+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDALQASGVYW 229


>gi|238784555|ref|ZP_04628562.1| Type II secretion system protein [Yersinia bercovieri ATCC 43970]
 gi|238714521|gb|EEQ06526.1| Type II secretion system protein [Yersinia bercovieri ATCC 43970]
          Length = 365

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 54/161 (33%), Gaps = 9/161 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
           +        +   ++AGLP+  ++ ++  +    P R   + + +    G SLSE+++  
Sbjct: 25  ERLVTVTRQLATLLQAGLPLVHSLQLLAKEMDALPWRCLLQEISQQVSQGQSLSEAMTHY 84

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R  P          +    +L GNL +    L      ++ ++ KV            I
Sbjct: 85  PRIFP-----RLYPPVIAMGELTGNLEQCCIQLVEHQERQQKLQKKVIKALKYPVFVCII 139

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
              +   +  +V            + P     L  +  +M 
Sbjct: 140 ALVVSVLMLVMVLPEFAQIYQS-FDTP--LPTLTASLLWMS 177



 Score = 35.1 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 42/134 (31%), Gaps = 7/134 (5%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                  +  +  AGLP++  +   ++  S++  R   + +    + G  L  ++ +   
Sbjct: 231 LSQIFQTLAITQHAGLPLTAGLDAALLSASNETYRQALQHIQRQINQGSPLYTALDQYHL 290

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           + P          +    +  G L   L  L+   + +    A      +E      I G
Sbjct: 291 FPP------LCQQLVRVGEESGALDVLLDKLADWHQQQTQDLADNLTQMLEPLLMLIIGG 344

Query: 135 SLPFCVSTLVYFTS 148
            +   V  +     
Sbjct: 345 IVGVLVIAMYLPIF 358


>gi|170681469|ref|YP_001745225.1| general secretion pathway protein GspF [Escherichia coli SMS-3-5]
 gi|170519187|gb|ACB17365.1| general secretion pathway protein GspF [Escherichia coli SMS-3-5]
          Length = 407

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +       ML+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDALQASGVYW 229


>gi|134095150|ref|YP_001100225.1| Type IV pilus assembly protein tapC [Herminiimonas arsenicoxydans]
          Length = 395

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/170 (11%), Positives = 50/170 (29%), Gaps = 6/170 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           +              +   ++AG+P+   +A +   +   +   F  V++     L  + 
Sbjct: 50  KIRSIDVQL--FSRQLYTLLKAGVPIMRGLAGLQESA---INKSFGLVVKDLRESLD-AG 103

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
                      +  S F T +    ++ G L E    L   L   ++M+ +++       
Sbjct: 104 RELSAAMRRHPKVFSPFYTNMVRVGEMTGRLEEVFLRLFDYLEFDRDMRQRIRTALRYPI 163

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
                +      ++  V  T          +      L +  +  ++   
Sbjct: 164 FVVSALTVAMIVINLFVIPTFAKVYAGFKAELPFMTKLLIGTSNFMVQYW 213



 Score = 37.0 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/132 (6%), Positives = 35/132 (26%), Gaps = 5/132 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                     S ++G+P+   + V+     +            + +   +    S +   
Sbjct: 259 LARFARSFALSSKSGVPIVQGLNVVAQTVGNTY-----IASRIEQMRDGVERGESILRTA 313

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
           +     +     +    +  G L   +  ++ +     + + K  +  +E      +   
Sbjct: 314 VTTGVFTPVVLQMIAIGEETGELDSLMDEIAAMYEREVDYELKTLSAQIEPILIIGLGIL 373

Query: 136 LPFCVSTLVYFT 147
           +      +    
Sbjct: 374 VVVLALGVFLPI 385


>gi|218687980|ref|YP_002396192.1| type IV pilin biogenesis protein [Escherichia coli ED1a]
 gi|218425544|emb|CAR06327.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli ED1a]
          Length = 400

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 55/181 (30%), Gaps = 22/181 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGVAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLIDKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +   G +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANKLLM 235

Query: 180 R 180
           R
Sbjct: 236 R 236


>gi|293449307|ref|ZP_06663728.1| general secretion pathway protein F [Escherichia coli B088]
 gi|291322397|gb|EFE61826.1| general secretion pathway protein F [Escherichia coli B088]
          Length = 407

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +        L+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQASGVYW 229


>gi|48898|emb|CAA41804.1| xpsF [Xanthomonas campestris]
          Length = 390

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 60/183 (32%), Gaps = 6/183 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ L++K+              +   + AG P+  A+++++    D       RVI    
Sbjct: 40  LRMLLRKKPFD-NAALVQFTQQLATLIGAGQPLDRALSILMDLPEDDKSR---RVIADIR 95

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
              ++  +   +         S     +    + GG++ + L  L+  L   + +K KV 
Sbjct: 96  D--TVRAAPLSVALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALKGKVI 153

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
              +       ++G     +   V          L           ++   ++    ++ 
Sbjct: 154 NALIYPAILLAVVGCALLFLLGYVVPQFAQMYESLDVALPWFTQAVLSVGLLVRDWWLVL 213

Query: 181 LMI 183
           ++I
Sbjct: 214 VVI 216


>gi|330900576|gb|EGH31995.1| type II secretion system protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 231

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
               +    +   + AG P+  ++ +++ Q      ++   R+ E    G  LS ++   
Sbjct: 62  AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEE 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    S     +    + GG L   L  LS  L   + ++ +V    +      ++
Sbjct: 122 GSQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +  +   ++ L+ +  P ++ +  +   G  +  +    + +G  +
Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGEFL 217


>gi|320195109|gb|EFW69738.1| General secretion pathway protein F [Escherichia coli WV_060327]
          Length = 407

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +       ML+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDALQASGMYW 229


>gi|116751083|ref|YP_847770.1| type II secretion system protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116700147|gb|ABK19335.1| type II secretion system protein [Syntrophobacter fumaroxidans
           MPOB]
          Length = 395

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 58/183 (31%), Gaps = 9/183 (4%)

Query: 1   MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIET 58
           +K +   R  +   +        +   + AGLPV  A+ +I   Q++   +   + ++E 
Sbjct: 42  IKPVKSHRQRRVPEEHLIRFFFDLSDLLSAGLPVDRALGLISSNQTNKVFQRISKGLLEE 101

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G  LS ++++             S  +    +  G L   L  L+  L  R+  +  
Sbjct: 102 VQGGSDLSGALAK-----YRHVFGNLSDHMVRAGEASGTLGPILRRLAEYLEQRRTFRQS 156

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN--DPRGHMLLGVAAAFMLIGI 176
           + +  +               +   V        N L     P    LL V       G 
Sbjct: 157 LVSSMIYPAILFATSLISMVVLLVYVIPNFAKIFNDLHQKIPPVTQFLLDVGIFLKDYGW 216

Query: 177 MVM 179
            ++
Sbjct: 217 ALV 219



 Score = 37.4 bits (85), Expect = 0.95,   Method: Composition-based stats.
 Identities = 16/143 (11%), Positives = 44/143 (30%), Gaps = 9/143 (6%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQHLGLSL 65
           R      +       +   ++AG+P+  A++ +  +  ++  ++     + +   +G S+
Sbjct: 253 RYLVLHSELTRFCRTLGTMIQAGVPLLRALS-LGQELLTNTVLKQAISPLYQEIKIGHSM 311

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S            +        +   S+  GN+ E L  L          + +     +E
Sbjct: 312 SNFFRS------RELFPSRMGTMLRISEEQGNMGEGLLGLGDHFEKELQRRLQRLMTLLE 365

Query: 126 AKASAWIIGSLPFCVSTLVYFTS 148
                     +   V ++     
Sbjct: 366 PAVIVVTGLVIGLMVLSMFTAIF 388


>gi|15642422|ref|NP_232055.1| type IV pilin biogenesis protein PilC [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121587632|ref|ZP_01677396.1| type IV pilin biogenesis protein PilC [Vibrio cholerae 2740-80]
 gi|121729936|ref|ZP_01682358.1| type IV pilin biogenesis protein PilC [Vibrio cholerae V52]
 gi|147673666|ref|YP_001217925.1| type IV pilin biogenesis protein PilC [Vibrio cholerae O395]
 gi|153818412|ref|ZP_01971079.1| type IV pilin biogenesis protein PilC [Vibrio cholerae NCTC 8457]
 gi|153827241|ref|ZP_01979908.1| type IV pilin biogenesis protein PilC [Vibrio cholerae MZO-2]
 gi|227082546|ref|YP_002811097.1| type IV pilin biogenesis protein PilC [Vibrio cholerae M66-2]
 gi|229507515|ref|ZP_04397020.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae BX 330286]
 gi|229512289|ref|ZP_04401768.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae B33]
 gi|229519425|ref|ZP_04408868.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae RC9]
 gi|229607021|ref|YP_002877669.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae MJ-1236]
 gi|254849548|ref|ZP_05238898.1| type IV pilin assembly protein pilC [Vibrio cholerae MO10]
 gi|255746904|ref|ZP_05420849.1| type 4 fimbrial assembly protein PilC [Vibrio cholera CIRS 101]
 gi|262161553|ref|ZP_06030663.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae INDRE 91/1]
 gi|262168404|ref|ZP_06036101.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae RC27]
 gi|262190164|ref|ZP_06048446.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae CT 5369-93]
 gi|298500217|ref|ZP_07010022.1| type IV pilin biogenesis protein PilC [Vibrio cholerae MAK 757]
 gi|20178038|sp|Q9X4G9|PILC_VIBCH RecName: Full=Type IV pilin assembly protein pilC; AltName:
           Full=Type IV-A pilus assembly protein pilC
 gi|4455003|gb|AAD21031.1| type IV-A pilus assembly protein PilC [Vibrio cholerae]
 gi|9657000|gb|AAF95568.1| type IV pilin biogenesis protein PilC [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121548142|gb|EAX58215.1| type IV pilin biogenesis protein PilC [Vibrio cholerae 2740-80]
 gi|121628324|gb|EAX60831.1| type IV pilin biogenesis protein PilC [Vibrio cholerae V52]
 gi|126511045|gb|EAZ73639.1| type IV pilin biogenesis protein PilC [Vibrio cholerae NCTC 8457]
 gi|146315549|gb|ABQ20088.1| type IV pilin biogenesis protein PilC [Vibrio cholerae O395]
 gi|149738855|gb|EDM53191.1| type IV pilin biogenesis protein PilC [Vibrio cholerae MZO-2]
 gi|227010434|gb|ACP06646.1| type IV pilin biogenesis protein PilC [Vibrio cholerae M66-2]
 gi|227014317|gb|ACP10527.1| type IV pilin biogenesis protein PilC [Vibrio cholerae O395]
 gi|229344114|gb|EEO09089.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae RC9]
 gi|229352254|gb|EEO17195.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae B33]
 gi|229355020|gb|EEO19941.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae BX 330286]
 gi|229369676|gb|ACQ60099.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae MJ-1236]
 gi|254845253|gb|EET23667.1| type IV pilin assembly protein pilC [Vibrio cholerae MO10]
 gi|255735306|gb|EET90706.1| type 4 fimbrial assembly protein PilC [Vibrio cholera CIRS 101]
 gi|262023296|gb|EEY42000.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae RC27]
 gi|262028864|gb|EEY47518.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae INDRE 91/1]
 gi|262033955|gb|EEY52413.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae CT 5369-93]
 gi|297540910|gb|EFH76964.1| type IV pilin biogenesis protein PilC [Vibrio cholerae MAK 757]
          Length = 408

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 49/149 (32%), Gaps = 6/149 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   +  G+P+  A+ ++        ++S   ++ ++   G  LS+++  
Sbjct: 67  SKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRT 126

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              +            +    ++ GNL E    L+      + ++AKV    +       
Sbjct: 127 ASAH-----FDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVL 181

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
           +   + + + T+V             +  
Sbjct: 182 VALGVSYLMLTMVIPEFESMFKGFGAELP 210



 Score = 36.6 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/131 (9%), Positives = 36/131 (27%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +  S  AG+P+  ++      S +         V      G+ +  ++        
Sbjct: 277 FSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAAGMPMYIAMRN------ 330

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +        + +  +  G L + L  ++ I     +         +E     ++   + 
Sbjct: 331 TEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVG 390

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 391 GLVVAMYLPIF 401


>gi|332994889|gb|AEF04944.1| type II secretion system protein [Alteromonas sp. SN2]
          Length = 408

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/186 (11%), Positives = 53/186 (28%), Gaps = 16/186 (8%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           DD       +    +AG+P+  AV+ +    +    S   ++     +            
Sbjct: 67  DDLVIFCRQMFSLTKAGIPLLKAVSGLAESCN----SIRLKLALEDAIVSLERGRTLSSG 122

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +  +     I    +  G L +A A L+  L   +  + +++A +         +
Sbjct: 123 LNQHPKIFNQLFVSIIHVGENTGQLEDAFAQLAVYLEREQETRKQIKAATRYPIFVLIAL 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM------------VMRL 181
                 ++  V        +    +        +  +  L+               ++R 
Sbjct: 183 AGAFVVLNIFVIPKFADMFSKFNAELPLMTRALIGTSDFLLNYWYLLIAGGIFIAYMIRR 242

Query: 182 MINFDV 187
            +N  V
Sbjct: 243 SLNTKV 248



 Score = 35.5 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/132 (8%), Positives = 32/132 (24%), Gaps = 5/132 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                      +RAG+P++ A+ +      +      + +   + +      +       
Sbjct: 272 LSRYCRSFSMMLRAGVPLTSALNLTSEAVGNVYMG-QKIIAMRERIEKGEGLARVSAASG 330

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
           +           +    +  G + E L   S       +   K     +E      +   
Sbjct: 331 LFTP----LVMQMIRVGEETGRVDELLVEASEFYEREVDYDLKNLTAKIEPFLIVVVAAM 386

Query: 136 LPFCVSTLVYFT 147
           +      +    
Sbjct: 387 VLVLALGIFTPM 398


>gi|304390831|ref|ZP_07372783.1| type II secretion system protein [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304325714|gb|EFL92960.1| type II secretion system protein [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 303

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 52/146 (35%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R  +   + P+ ++++  +V AG P+  A+  +  + +     E  +++    
Sbjct: 150 LTGAARRRQLRLNQELPDVIELLALAVGAGEPLYGALHRVSARCAGVAGQELEKILAAAD 209

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ S++        + ++     I    + G  L+  L +     R     +   +
Sbjct: 210 NGDSLAPSLTAARARNDSEILAHLIDAIVSALERGSPLAGVLRSQVADSRAVARTQLLTE 269

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146
               E      ++  +         +
Sbjct: 270 GGKKEVLMMVPVVFLILPLTVVFALY 295


>gi|218706588|ref|YP_002414107.1| General secretion pathway protein F [Escherichia coli UMN026]
 gi|293406577|ref|ZP_06650503.1| hypothetical protein ECGG_01883 [Escherichia coli FVEC1412]
 gi|298382319|ref|ZP_06991916.1| hypothetical protein ECFG_02075 [Escherichia coli FVEC1302]
 gi|300900294|ref|ZP_07118473.1| general secretion pathway protein F [Escherichia coli MS 198-1]
 gi|331664574|ref|ZP_08365480.1| general secretion pathway protein F [Escherichia coli TA143]
 gi|218433685|emb|CAR14600.1| General secretion pathway protein F [Escherichia coli UMN026]
 gi|291426583|gb|EFE99615.1| hypothetical protein ECGG_01883 [Escherichia coli FVEC1412]
 gi|298277459|gb|EFI18975.1| hypothetical protein ECFG_02075 [Escherichia coli FVEC1302]
 gi|300356184|gb|EFJ72054.1| general secretion pathway protein F [Escherichia coli MS 198-1]
 gi|331058505|gb|EGI30486.1| general secretion pathway protein F [Escherichia coli TA143]
          Length = 407

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +       ML+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDALQASGVYW 229


>gi|238796992|ref|ZP_04640496.1| Type II secretion system protein [Yersinia mollaretii ATCC 43969]
 gi|238719252|gb|EEQ11064.1| Type II secretion system protein [Yersinia mollaretii ATCC 43969]
          Length = 267

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 54/140 (38%), Gaps = 2/140 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH--LGLSL 65
           RT   L   P  +DI    V++G+ + ++++    +           +++         L
Sbjct: 114 RTESILKSLPFFIDITAACVQSGMTIDNSLSYSAKKFKLINADISFIMLKMTKRGEINGL 173

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             +I  + +    +E+  F + +      G  + + L  LS+ +R+ + +  + +   + 
Sbjct: 174 ESAIKELHQCTTAKEIRMFCSALQYSISFGSTVYDQLTKLSQDIREMQLLVTEERISKLS 233

Query: 126 AKASAWIIGSLPFCVSTLVY 145
           AK +  +   +      LV 
Sbjct: 234 AKLTIPLFLFILIPFIVLVI 253


>gi|149181786|ref|ZP_01860277.1| hypothetical protein BSG1_01190 [Bacillus sp. SG-1]
 gi|148850527|gb|EDL64686.1| hypothetical protein BSG1_01190 [Bacillus sp. SG-1]
          Length = 403

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 49/151 (32%), Gaps = 6/151 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            L      ++AG+ V DA  ++  Q+ S  +      V      G  LS+++++  R   
Sbjct: 67  FLRQFATLLQAGVTVVDATEILSSQTGSKALSKALDEVQLELKDGNPLSDALAKHRRIFE 126

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G+L E L +L+     +   K K+ +          I  ++ 
Sbjct: 127 P-----MLINMVRAGEASGSLDETLESLATHYEKQHMTKQKIISALAYPAVVGVIAIAVV 181

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168
             +   V  T    +     +        + 
Sbjct: 182 IFLLVAVVPTFVTMLADFGGELPAITQFVLG 212


>gi|90406758|ref|ZP_01214951.1| general secretion pathway protein F [Psychromonas sp. CNPT3]
 gi|90312211|gb|EAS40303.1| general secretion pathway protein F [Psychromonas sp. CNPT3]
          Length = 406

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 52/174 (29%), Gaps = 6/174 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R      D       +   V A +P+ + +  ++ Q       E  + I        +  
Sbjct: 60  RCKIKTADLALITRQLSTLVAASIPIEECLQAVLEQCE----KENLKTIIASVRSSIIEG 115

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
                               +    +  G+L + L  L+     R+ MK+ +Q   +   
Sbjct: 116 HSLAESLGAFPFVFDHLFCAMVAAGERSGHLDKVLDKLADYAEQRQAMKSTIQQAMIYPL 175

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVM 179
              ++   +   + T V     G    +  D       L+ ++ A    G+ +M
Sbjct: 176 VLTFVAVGVISILLTSVVPQVVGQFEHMGADLPATTRFLITISDALRAYGLYLM 229


>gi|74316771|ref|YP_314511.1| type II secretory pathway component PulF [Thiobacillus
           denitrificans ATCC 25259]
 gi|74056266|gb|AAZ96706.1| type II secretory pathway component PulF [Thiobacillus
           denitrificans ATCC 25259]
          Length = 407

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/172 (11%), Positives = 52/172 (30%), Gaps = 8/172 (4%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLS 66
           R              +   +RAG+P+  A+A ++  +++         + E+   G  LS
Sbjct: 63  RIKPIDVQL--FSRQLYTLLRAGVPILRALAGLIESTANLAFARVIASLKESLEAGRDLS 120

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++ +  R       S F   +    +  G L E    +   L   +  +A+++      
Sbjct: 121 TAMRQHPR-----VFSPFYVAMVRVGEATGRLDEIFLRMFEHLEFERETRARIKEALRYP 175

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                 +      ++  V             +      + +  + + +    
Sbjct: 176 TFVLIAMVVAVAVINVFVIPAFAKVYAGFGAELPLMTRILIETSRLTLAYGW 227



 Score = 43.6 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/136 (9%), Positives = 44/136 (32%), Gaps = 5/136 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
                      +  S+++G+PV+ A++V+   + +            + +   +    S 
Sbjct: 268 LRSTLGRFARTLALSMKSGIPVAQALSVVAEVTDNAWIG-----SRVEQMRNGIERGESI 322

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +         +     +    +  G++ E +  ++ +     + + K  +  +E    A 
Sbjct: 323 LRTAQHAGVFNAVVLQMIAVGEETGSIDELMQEVAEMYEREVDYEIKTLSARIEPIIIAA 382

Query: 132 IIGSLPFCVSTLVYFT 147
           + G +      +    
Sbjct: 383 MGGLVLVLALGVFLPM 398


>gi|317403410|gb|EFV83923.1| type II secretion system protein [Achromobacter xylosoxidans C54]
          Length = 246

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 1/147 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           ++   + R        P  LD++   V AGL    A+          P+R      +   
Sbjct: 89  LRAQGEARRRGIERGLPFMLDMMTLCVEAGLGAHAALQAAAANGPSGPLRDALAGALAQV 148

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G+    +I  M        V  ++T ++    LG +L   L   +   R  ++M+A+ 
Sbjct: 149 RAGVPRVAAIQAMADRCGSPLVHRWATALAHADALGISLGPLLRAQAAHCRSERHMRAER 208

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146
            A+    K    +IG +  C   ++ F
Sbjct: 209 LAMQAPVKMLLPLIGCIFPCTFLVLAF 235


>gi|119715778|ref|YP_922743.1| integral membrane protein [Nocardioides sp. JS614]
 gi|119536439|gb|ABL81056.1| integral membrane protein [Nocardioides sp. JS614]
          Length = 299

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 69/185 (37%), Gaps = 2/185 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
              +R  + ++      + +  +  A   +  A+   VG +   +R+  R +       +
Sbjct: 88  RAGRRQLEKIEALAAWTESLRDTATAAAGLEQAIPATVGAAHALLRAPVRDLAARLDGRV 147

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQAL 122
            L E+++R    +           +S+ ++     L   L +L+   R    M+ KV+  
Sbjct: 148 PLPEALARFADDVDDPAADMVVAALSLNARQRAGGLERILTSLAASSRTELEMRRKVEHE 207

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
               +  A  I         L    + G++    + P G ++L + AA  +   + MR +
Sbjct: 208 RRALRRQAQRIAFAVLGFVALQAVFARGWVEP-YSTPLGQLVLAILAAIFVGSFVRMRSL 266

Query: 183 INFDV 187
            N +V
Sbjct: 267 SNGEV 271


>gi|306819826|ref|ZP_07453480.1| conserved hypothetical protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304552073|gb|EFM40010.1| conserved hypothetical protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 341

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 62/168 (36%), Gaps = 7/168 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65
           K+ A    +       +    ++GLP+ +A++V   + S   ++     + E+   G  +
Sbjct: 2   KKNALTNSELSLFCYQLSLIFKSGLPLDEAMSVFTDEMSTPTLKKIALSIKESVDNGEPI 61

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E++ +        E   + T +   +   GNL E L+ LS   ++ + +  KV    + 
Sbjct: 62  YEAVKKH------DEFPKYMTGMMEIAYNTGNLEEELSRLSTYYQEVERLNQKVSNAVVY 115

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
                 ++  +   +   V       ++ +  D      + ++    L
Sbjct: 116 PVILTGLMLIIITFLVVKVIPMFSEIIDSIGADIPNTTAVLISIGLAL 163


>gi|191169107|ref|ZP_03030868.1| general secretion pathway protein GspF [Escherichia coli B7A]
 gi|218696671|ref|YP_002404338.1| General secretion pathway protein F [Escherichia coli 55989]
 gi|300905918|ref|ZP_07123650.1| general secretion pathway protein F [Escherichia coli MS 84-1]
 gi|301304136|ref|ZP_07210252.1| general secretion pathway protein F [Escherichia coli MS 124-1]
 gi|307310405|ref|ZP_07590053.1| general secretion pathway protein F [Escherichia coli W]
 gi|309794066|ref|ZP_07688491.1| general secretion pathway protein F [Escherichia coli MS 145-7]
 gi|190900859|gb|EDV60647.1| general secretion pathway protein GspF [Escherichia coli B7A]
 gi|218353403|emb|CAU99453.1| General secretion pathway protein F [Escherichia coli 55989]
 gi|300402271|gb|EFJ85809.1| general secretion pathway protein F [Escherichia coli MS 84-1]
 gi|300840549|gb|EFK68309.1| general secretion pathway protein F [Escherichia coli MS 124-1]
 gi|306909300|gb|EFN39795.1| general secretion pathway protein F [Escherichia coli W]
 gi|308122473|gb|EFO59735.1| general secretion pathway protein F [Escherichia coli MS 145-7]
 gi|315062280|gb|ADT76607.1| type II secretion system lipoprotein F [Escherichia coli W]
 gi|315253341|gb|EFU33309.1| general secretion pathway protein F [Escherichia coli MS 85-1]
 gi|323377136|gb|ADX49404.1| general secretion pathway protein F [Escherichia coli KO11]
 gi|324018100|gb|EGB87319.1| general secretion pathway protein F [Escherichia coli MS 117-3]
 gi|332344917|gb|AEE58251.1| general secretion pathway protein GspF [Escherichia coli UMNK88]
          Length = 407

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +        L+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQASGVYW 229


>gi|157154920|ref|YP_001464422.1| general secretion pathway protein F [Escherichia coli E24377A]
 gi|193062187|ref|ZP_03043283.1| general secretion pathway protein GspF [Escherichia coli E22]
 gi|260869722|ref|YP_003236124.1| putative type II secretion protein GspF [Escherichia coli O111:H-
           str. 11128]
 gi|300824046|ref|ZP_07104167.1| general secretion pathway protein F [Escherichia coli MS 119-7]
 gi|331669775|ref|ZP_08370620.1| general secretion pathway protein F [Escherichia coli TA271]
 gi|18139875|gb|AAL60186.1|AF426313_6 hypothetical type II secretion protein GspF [Escherichia coli]
 gi|157076950|gb|ABV16658.1| general secretion pathway protein F [Escherichia coli E24377A]
 gi|192932407|gb|EDV85005.1| general secretion pathway protein GspF [Escherichia coli E22]
 gi|257766078|dbj|BAI37573.1| putative type II secretion protein GspF [Escherichia coli O111:H-
           str. 11128]
 gi|300523436|gb|EFK44505.1| general secretion pathway protein F [Escherichia coli MS 119-7]
 gi|323178668|gb|EFZ64244.1| general secretion pathway protein F [Escherichia coli 1180]
 gi|331062688|gb|EGI34602.1| general secretion pathway protein F [Escherichia coli TA271]
          Length = 407

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +        L+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQASGVYW 229


>gi|325569593|ref|ZP_08145640.1| type IV pilus assembly protein [Enterococcus casseliflavus ATCC
           12755]
 gi|325157149|gb|EGC69314.1| type IV pilus assembly protein [Enterococcus casseliflavus ATCC
           12755]
          Length = 403

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/187 (12%), Positives = 55/187 (29%), Gaps = 21/187 (11%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVR 74
               L      + +G+ + DA  ++  Q      +     V +    G  LSE+      
Sbjct: 65  LVAYLRQFSTLIASGITIVDASRMLEEQQKKPNFKRILGEVRDDIDGGRPLSEAYKAHPN 124

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
             P+       T +   S++ G+L + L +++         ++ +    +       +  
Sbjct: 125 AFPV-----LLTSVITVSEMSGSLEKNLTDMADYYEKSAENRSGLVTAMVYPIILILMTF 179

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGH---------------MLLGVAAAFMLIGIMVM 179
            +   +  ++             D                    +L V    ++IG  ++
Sbjct: 180 VVGIILLVMIVPMFVEVFESFDTDLPRITVITMAISDFLQTRGWVLAVFIVGIMIGFWLI 239

Query: 180 RLMINFD 186
           R     D
Sbjct: 240 RRNEKID 246


>gi|170681709|ref|YP_001742226.1| type IV pilin biogenesis protein [Escherichia coli SMS-3-5]
 gi|170519427|gb|ACB17605.1| type IV pilus assembly protein PilC [Escherichia coli SMS-3-5]
          Length = 400

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 56/181 (30%), Gaps = 22/181 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAYDLEQGIAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V         +                  +   G +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKIFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANKLLM 235

Query: 180 R 180
           R
Sbjct: 236 R 236


>gi|194436718|ref|ZP_03068818.1| general secretion pathway protein GspF [Escherichia coli 101-1]
 gi|194424200|gb|EDX40187.1| general secretion pathway protein GspF [Escherichia coli 101-1]
          Length = 407

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +       ML+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDALQASGVYW 229


>gi|191171825|ref|ZP_03033371.1| general secretion pathway protein GspF [Escherichia coli F11]
 gi|300993060|ref|ZP_07180168.1| general secretion pathway protein F [Escherichia coli MS 200-1]
 gi|190907860|gb|EDV67453.1| general secretion pathway protein GspF [Escherichia coli F11]
 gi|300305184|gb|EFJ59704.1| general secretion pathway protein F [Escherichia coli MS 200-1]
 gi|324011872|gb|EGB81091.1| general secretion pathway protein F [Escherichia coli MS 60-1]
          Length = 407

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +       ML+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDALQASGVYW 229


>gi|320181013|gb|EFW55934.1| General secretion pathway protein F [Shigella boydii ATCC 9905]
          Length = 407

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKTGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +        L+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQASGVYW 229


>gi|296120429|ref|YP_003628207.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
 gi|296012769|gb|ADG66008.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
          Length = 402

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/186 (11%), Positives = 61/186 (32%), Gaps = 9/186 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60
           + L  +R              +   +RAG+P+  ++ ++  Q+ +  ++     V     
Sbjct: 52  QRLASRRVPP--RMLATLFSQMSDLLRAGVPLLRSIELLERQTKNQALKRVLEDVRSRVA 109

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L++S+            +  +  I    + GG L ++L+ ++     ++ +K+KV 
Sbjct: 110 DGGRLADSMKEHPNA-----FNKLTVSIVHAGEEGGFLEDSLSRVAVFTEHQEELKSKVV 164

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP-RGHMLLGVAAAFMLIGIMVM 179
           A          +   +   +            + +            + A   ++     
Sbjct: 165 AAMSYPLVLMVLGTIVVVGMIVFFVPGFEPMFDSMKQTGSLPWATTVLLAISNILQRWWW 224

Query: 180 RLMINF 185
            +++  
Sbjct: 225 AVLLAI 230



 Score = 36.3 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/132 (10%), Positives = 38/132 (28%), Gaps = 5/132 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
              ++   +  G+P+  A+ +    + + V S+                      +  P 
Sbjct: 272 FCRVLGTLLHNGVPLLQALNIAKDATGNRVLSDAIAKAAENVSSGKTLAQPLAASKQFP- 330

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +   NL   L  ++  +    N +  +    +E      + G++ F
Sbjct: 331 ----TDVLEMIAVGEEANNLENVLIGVADKMEKATNRQLDLVVRLLEPLMLVVMAGAILF 386

Query: 139 CVSTLVYFTSPG 150
            +  L+      
Sbjct: 387 LLIALMLPIFQS 398


>gi|68537056|ref|YP_251761.1| hypothetical protein jk1961 [Corynebacterium jeikeium K411]
 gi|68264655|emb|CAI38143.1| putative membrane protein [Corynebacterium jeikeium K411]
          Length = 374

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 62/179 (34%), Gaps = 2/179 (1%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + +  +R  K L +  + +D I R V AG    +AV       + + +R E         
Sbjct: 24  RMMKTRRQMKTLAEVRDVVDAIAREVAAGARPLEAVEHAAEGLNSETLRHELGVACVKVR 83

Query: 61  LGLSLSESISRMVRYMPLQEVSFF-STVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           LG +     +                 +  +  + G  L+         +  +    +K 
Sbjct: 84  LGAAPGAGAAGAAPGSDAPSFLAHLFHIWGISRRHGVGLATLARAHVTDIDAQLAHISKS 143

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            + +  A+ +  ++ +LP   + L   +  G +  L+ +  G +L  V    +  G + 
Sbjct: 144 TSATAGARLTVTVLLALPVGAAALGQSSGLGTLTFLLTNVLGVLLFLVGVGLVCAGTLW 202


>gi|260579400|ref|ZP_05847282.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
 gi|258602529|gb|EEW15824.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
          Length = 374

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 58/179 (32%), Gaps = 2/179 (1%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQH 60
           + +  +R  K L +  + +D I R V AG    +AV       +         V      
Sbjct: 24  RMMKTRRQMKTLAEVRDVVDAIAREVAAGARPLEAVEHAAEGLNSETLRHQLDVACVRVR 83

Query: 61  LGLSLSESISRMVRYMPLQEVSFF-STVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           LG +     +                 +  +  + G  L+         +  +    +K 
Sbjct: 84  LGAAPGAGAAGAAPGSDAPSFLAHLFHIWGISRRHGVGLATLARAHVTDIDAQLAHISKS 143

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            + +  A+ +  ++ +LP     L   +  G +  L+ +  G +L  V    +  G + 
Sbjct: 144 TSATAGARLTVTVLLALPVGAVALGQSSGLGTLTFLLTNVLGVLLFLVGVGLVCAGTLW 202


>gi|163814842|ref|ZP_02206230.1| hypothetical protein COPEUT_00992 [Coprococcus eutactus ATCC 27759]
 gi|158449781|gb|EDP26776.1| hypothetical protein COPEUT_00992 [Coprococcus eutactus ATCC 27759]
          Length = 434

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/155 (10%), Positives = 53/155 (34%), Gaps = 3/155 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAV-AVIVGQSSDPVRSEFRRVIETQ 59
           +    K+R  + + D+P  +D ++  + AG+ +  +   ++       +  E R  +   
Sbjct: 282 LSKQEKERKQQLMIDYPELVDRLILYLGAGVTIRGSFVRMVQNDDESALMKELRYTLNEI 341

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G+   E+   M   + +       +++S          + +  ++   +     + ++
Sbjct: 342 QAGIPEGEAYYNMGHRINIPVYMKLMSMLSQNV--SKGTKDIMIMMAGEEQAALQTRKEL 399

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
                E   +  +   +      +V    P  M+ 
Sbjct: 400 ARKKGEEAGTRLLFPMIVLLGVVMVIVVLPAVMSF 434


>gi|227114131|ref|ZP_03827787.1| general secretion pathway protein F [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 408

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 54/169 (31%), Gaps = 9/169 (5%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLS 64
           +++      D       +   V A LP+ +A+  +  QS    +      V      G S
Sbjct: 60  RRKIRISTSDLALLTRQLATLVAASLPLEEALDAVAKQSEKPQLSQLMAAVRSKVMEGHS 119

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L++++                  +    +  G+L   L  L+     R+ M++++Q   +
Sbjct: 120 LADAMKCFP-----SSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMI 174

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
                  +       VS L+    P  +   I+  +   L       M 
Sbjct: 175 YP---CVLTVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMS 220


>gi|197262922|ref|ZP_03162996.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197241177|gb|EDY23797.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
          Length = 400

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 58/173 (33%), Gaps = 10/173 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q          R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P          +    +L G L+E    L+R  + ++ +   V+           
Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPA---I 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183
           I+  +   V  +++F  P +  +  +      LL      +   G     L++
Sbjct: 169 ILTMVALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGWLIL 221


>gi|89093855|ref|ZP_01166801.1| general secretion pathway protein F [Oceanospirillum sp. MED92]
 gi|89081985|gb|EAR61211.1| general secretion pathway protein F [Oceanospirillum sp. MED92]
          Length = 407

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/165 (11%), Positives = 54/165 (32%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRM 72
           D+       +    +AG+P++ A+  +     +P+  E    +      G  LS ++++ 
Sbjct: 68  DELIMFSRQMYSLTKAGVPITRAMRGLANTVQNPLLVETLSDLANDLEKGHELSSALAKH 127

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +       S     +    +  G L +A   ++  L   +    +V+  +         
Sbjct: 128 PK-----VFSELYVSMIHVGENTGQLDDAFRQMASYLELERQTVKQVKQATRYPMFVMIA 182

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           I +    ++ +V             +      + V+ +  ++   
Sbjct: 183 IAAAITLINIVVIPQFKNIFVSFGGEMPLPTKILVSISDFMVNWW 227



 Score = 38.6 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 14/154 (9%), Positives = 37/154 (24%), Gaps = 13/154 (8%)

Query: 2   KHLIKKRTAKF--------LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR 53
           + +  +R  KF                      ++AG+P+   +A++     +       
Sbjct: 251 RMVWDRRKLKFPIIGPIIYRTILARFSRTFSIVLKAGVPIEQGLAIVANAVGNKHIGTKV 310

Query: 54  RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
             +        +    S        +  S     +    +  G + + L   +       
Sbjct: 311 ASMRQ-----GIERGESFTQTAHQTEMFSPLVMQMLAVGEETGRVDQMLEEAAGFYEQEV 365

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
               K    ++E      I   +      +    
Sbjct: 366 EYDLKNLTSAIEPILIVAIGIMVLILALGVFLPL 399


>gi|323946661|gb|EGB42683.1| general secretion pathway protein F [Escherichia coli H120]
          Length = 407

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +        L+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQASGVYW 229


>gi|186477404|ref|YP_001858874.1| type II secretion system protein [Burkholderia phymatum STM815]
 gi|184193863|gb|ACC71828.1| type II secretion system protein [Burkholderia phymatum STM815]
          Length = 407

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 51/160 (31%), Gaps = 10/160 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-----VRSEFRRVIETQHLGLSLSESISRMV 73
               +   +RAGLP++ A+ ++   S        +    R +      G+S S +++R  
Sbjct: 69  FTRQLSGLLRAGLPLASALELLAQASKHNARTKGMPRIVRALARDITAGVSFSSALARHP 128

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   +     +    +  G L   LA L+         +AKV+A      A   + 
Sbjct: 129 AQ-----FNALYCQLVEVGEASGTLPAVLARLADDRERAAAQRAKVRAALTYPVAVLLLA 183

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
            S+   +   V  T     +             +A +   
Sbjct: 184 LSITTALLVWVVPTFKQIFDGFGAKLPAPTQFVLAMSAAA 223


>gi|86360424|ref|YP_472312.1| putative pilus assembly protein [Rhizobium etli CFN 42]
 gi|86284526|gb|ABC93585.1| putative pilus assembly protein [Rhizobium etli CFN 42]
          Length = 300

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 66/153 (43%), Gaps = 4/153 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLG 62
            ++ R  +   +FP  LD++V + +A   + +++ +    +   V   E  + ++   LG
Sbjct: 146 KMQDRKERISREFPYFLDLVVMTQQAQATLPESLRLYAEAAPGTVMSEEIEQTLKDVALG 205

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             + E++ R+   M  +EV      +      G N  E L   +R LR R   + +    
Sbjct: 206 TGMIEALQRLEARMTAEEVVRVIRAVIQGEVEGSNRVELLREHARDLRFR---RWEKADR 262

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + E   +  ++ ++   VS L+   +P  + ++
Sbjct: 263 ASEKLKAKIVMPAMMIVVSILLLVLAPAIVEMM 295


>gi|28198639|ref|NP_778953.1| general secretory pathway protein F [Xylella fastidiosa Temecula1]
 gi|182681323|ref|YP_001829483.1| type II secretion system protein [Xylella fastidiosa M23]
 gi|28056723|gb|AAO28602.1| general secretory pathway protein F [Xylella fastidiosa Temecula1]
 gi|182631433|gb|ACB92209.1| type II secretion system protein [Xylella fastidiosa M23]
 gi|307579773|gb|ADN63742.1| general secretion pathway protein F [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 405

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 57/171 (33%), Gaps = 7/171 (4%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVR 74
             +    +   + AG P+  A++++     +   R     V +    G  LS ++ R   
Sbjct: 68  LIHFTQQLAALLGAGQPLDRALSILTDLPDNEKSRRIIGDVCDIVRGGTPLSIALER--- 124

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                  S     ++   + GGN+ E L  L+  L   + ++AKV    +      +++G
Sbjct: 125 --QHGVFSRLYVTMARAGESGGNMPETLQRLADYLERNQVVRAKVINALIYPVILIFVVG 182

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
                +   V          L +        GV A    IG     L+   
Sbjct: 183 GALAFLLGYVVPQFGAMYESL-DVALPWFTQGVLALGHFIGDWWFLLLAVI 232


>gi|227875850|ref|ZP_03993976.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
 gi|269977485|ref|ZP_06184457.1| type II secretion system protein [Mobiluncus mulieris 28-1]
 gi|306819131|ref|ZP_07452845.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|307700029|ref|ZP_07637078.1| type II secretion system F domain protein [Mobiluncus mulieris
           FB024-16]
 gi|227843598|gb|EEJ53781.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
 gi|269934401|gb|EEZ90963.1| type II secretion system protein [Mobiluncus mulieris 28-1]
 gi|304648107|gb|EFM45418.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|307614790|gb|EFN94010.1| type II secretion system F domain protein [Mobiluncus mulieris
           FB024-16]
          Length = 297

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 51/142 (35%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            K+R  +   + P+A++++  +V AG  +  A+  +  + +     E  R++     G +
Sbjct: 144 AKQRQMQLNQELPDAIELLALAVGAGESLYMALERVASRCTQVTGEELTRLMAELKQGEA 203

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           LS S++        + +S     +    + G  L++ L       R     +   Q    
Sbjct: 204 LSMSLTSWRTRTESEVLSHLVDAVVSALERGSPLAQVLREQVADSRSAARNQLLAQGGKK 263

Query: 125 EAKASAWIIGSLPFCVSTLVYF 146
           E      ++  +         +
Sbjct: 264 EVWMMIPVVFLILPLTVVFALY 285


>gi|170780637|ref|YP_001708969.1| putative integral membrane protein [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169155205|emb|CAQ00306.1| putative integral membrane protein [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 333

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 61/183 (33%), Gaps = 11/183 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQHLGLSLSESI 69
            ++    +  +   + AGL +  A + +    G++    R+    V        S   + 
Sbjct: 24  TEEIATFVRRLAVLLGAGLHLERAWSQLAPPGGRARRGERAVPALVRRVASGAGSAPLAE 83

Query: 70  SRMVRYMPLQ--------EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
             +     ++             +  + V  + G  L+ +L  L+  L D   ++     
Sbjct: 84  RVVAAATAVEPAGGATAGSWCALAAGLEVADRTGAPLARSLDRLAVSLVDIARVRRDAGT 143

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
                 A++  +  +P     L        + VL+    G   LGV ++ + IG    R 
Sbjct: 144 ALAGPVATSRTVLLMPGAGLLLAAGLGFDPLRVLVTTLPGLACLGVGSSLVAIGWRWNRD 203

Query: 182 MIN 184
           ++ 
Sbjct: 204 LVR 206


>gi|71908835|ref|YP_286422.1| type II secretion system protein [Dechloromonas aromatica RCB]
 gi|71848456|gb|AAZ47952.1| type II secretion system protein [Dechloromonas aromatica RCB]
          Length = 394

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 55/173 (31%), Gaps = 8/173 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQH 60
           +   K R+ KF    P     ++  + AGL V + +  +  Q      SE    ++    
Sbjct: 46  QKRGKSRSGKF--QLPLFTRQLLSLLEAGLNVVEGLETLAEQDQGSGSSEVLNGLLTALR 103

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SLS ++ R     P              S+  G++ E+L          + +K K+ 
Sbjct: 104 QGQSLSTALQRFPEVFP-----ELYVATVKASERTGDMPESLRRYLTFDEKLRELKKKLV 158

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           + ++       +   + F +   V              P G   L       +
Sbjct: 159 SAAIYPLLLLAVGLLVTFFLLGFVVPRFALVFADSGRQPEGLSSLLFIWGDFV 211


>gi|71274718|ref|ZP_00651006.1| type II secretion system protein [Xylella fastidiosa Dixon]
 gi|71899601|ref|ZP_00681756.1| type II secretion system protein [Xylella fastidiosa Ann-1]
 gi|71164450|gb|EAO14164.1| type II secretion system protein [Xylella fastidiosa Dixon]
 gi|71730643|gb|EAO32719.1| type II secretion system protein [Xylella fastidiosa Ann-1]
          Length = 405

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 58/173 (33%), Gaps = 7/173 (4%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVR 74
             +    +   + AG P+  A++++     +   R     V +    G  LS ++ R   
Sbjct: 68  LIHFTQQLAALLGAGQPLDRALSILTDLPDNEKSRRIIGDVCDIVRGGTPLSIALER--- 124

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                  S     ++   + GGN+ E L  L+  L   + ++AKV    +      +++G
Sbjct: 125 --QHGVFSRLYVTMARAGESGGNMPETLQRLADYLERNQVVRAKVINALIYPVILIFVVG 182

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
                +   V          L +        GV A    IG     L+    +
Sbjct: 183 GALAFLLGYVVPQFGAMYESL-DVALPWFTQGVLALGHFIGDWWFLLLAVIGI 234


>gi|254449003|ref|ZP_05062457.1| type II secretion system protein [gamma proteobacterium HTCC5015]
 gi|198261397|gb|EDY85688.1| type II secretion system protein [gamma proteobacterium HTCC5015]
          Length = 408

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/171 (10%), Positives = 52/171 (30%), Gaps = 7/171 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   + +G+P+  A  ++   +    ++     +      G + +++++   
Sbjct: 68  DIAVFARQMATMMSSGVPLVQAFEIVGSSADNPRMKKLIYDIKNDVEGGANFADALAAHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
            +            +    +  G L   L  ++      + +K K++       A   + 
Sbjct: 128 DH-----FDSLFVNLVASGEASGTLETLLDKVATYKEKSEAIKKKIKKAMTYPIAVMVMA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA-FMLIGIMVMRLMI 183
             +   +   V             D      L V A+ +M   I ++  + 
Sbjct: 183 AVVTVILMVFVVPQFESIFQGFGADLPAFTQLVVDASRWMRSNIFILIAIT 233



 Score = 39.3 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 38/130 (29%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+ +A+  I G  ++ V  +    I  +        +  R     P 
Sbjct: 276 FARTLATMFAAGVPLVEAMNSISGAVNNHVYEQAIYQIRDEISSGDPLTASMRRTNLFPN 335

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G++   L  ++    +  +      +  ME    A +   +  
Sbjct: 336 -----MMLAMVQIGEESGSIDSMLLKVADFYEEEVDNTVDNLSSLMEPMIMAVLGVLVGG 390

Query: 139 CVSTLVYFTS 148
            V  +     
Sbjct: 391 LVIAMYLPIF 400


>gi|168464305|ref|ZP_02698208.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195632934|gb|EDX51388.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 400

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q          R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P          +    +L G L+E    L+R  + ++ +   V+           
Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPA---I 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183
           I+      V  +++F  P +  +  +      LL      +   G     L++
Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGAAWGWLIL 221


>gi|77919741|ref|YP_357556.1| putative general protein secretion protein [Pelobacter carbinolicus
           DSM 2380]
 gi|77545824|gb|ABA89386.1| putative general protein secretion protein [Pelobacter carbinolicus
           DSM 2380]
          Length = 405

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 58/174 (33%), Gaps = 12/174 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
             D           + AGL +   + ++  Q  +  ++     V E    G + ++++S+
Sbjct: 64  TKDLVVFTRQFATMIDAGLALVQCLDILGRQQENQVLKKVLVEVKEGVESGSTFADALSK 123

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +             +    ++GG L   L  L+  L     +K KV+           
Sbjct: 124 HPKI-----FDELFVNLVAAGEVGGILDTILNRLAAYLEKAHKLKKKVKGAMTYPAT--- 175

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM--VMRLMI 183
           ++G     +  ++ F  P +   +  D  G + L       +   +   +  +I
Sbjct: 176 VVGIAVIVIGVILVFVIPAF-EKMFADFGGVLPLPTRIVIAISNFIQSWIFAII 228



 Score = 34.7 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 12/130 (9%), Positives = 37/130 (28%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+P+ D + ++   + +              +  S+SE  +        
Sbjct: 273 FSRTLGTMISSGVPILDGLDIVAKTAGNKTVE-----NAVYKVRQSISEGKTIAEPLEKT 327

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G++   L  ++    D  +         ME     ++  ++  
Sbjct: 328 GVFPPMVCQMIGVGEQSGSIDGMLNKIADFYDDEVDEAVGNLTAMMEPMLMLFLGTTVGG 387

Query: 139 CVSTLVYFTS 148
            V  +     
Sbjct: 388 LVIAMYLPIF 397


>gi|148979562|ref|ZP_01815593.1| type IV pilin biogenesis protein PilC [Vibrionales bacterium
           SWAT-3]
 gi|145961746|gb|EDK27042.1| type IV pilin biogenesis protein PilC [Vibrionales bacterium
           SWAT-3]
          Length = 409

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 57/161 (35%), Gaps = 12/161 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           + H +K R      D       +   +  G+P+  A+ ++        ++S    + +  
Sbjct: 62  LTHRVKSR------DITVLTRQLATMLATGVPIVQAIKLVSDNHRKAEMKSILSHICKGV 115

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G  +S+++    R+          T +    +L GNL++    L+      + +K+KV
Sbjct: 116 EAGTPISKAMRTASRH-----FDDLYTDLVATGELSGNLAQVFERLATYREKSEQLKSKV 170

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
               +       +  ++ + + T+V        +    D  
Sbjct: 171 IKALIYPAMVVTVALTVSYLMLTMVIPEFESMFSGFGADLP 211


>gi|531742|emb|CAA56981.1| xcpS [Pseudomonas putida]
          Length = 400

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 50/171 (29%), Gaps = 7/171 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +               +     AG+P+ DA+A +  Q   P       V     L   L 
Sbjct: 53  RHQRLSRAQLCELTRQLATLTGAGIPLVDALATLERQLRQPALH-SVLVALRGSLAEGLG 111

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +             S     +    +  G L++ L  L+  L   +  + K +   +  
Sbjct: 112 LAR---SLARQGASFSGLYCALVEAGERSGRLAQVLTRLADHLEQVQRQQHKARTALIYP 168

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
                ++G     V  L+ F  P       +  +   L+      +  G++
Sbjct: 169 ---CVLMGVSLAVVIGLMTFVVPKLTEQFAHAGQSLPLITALLIGLSQGLV 216



 Score = 39.7 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/128 (11%), Positives = 38/128 (29%), Gaps = 7/128 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +     +G+ + +A+ V     S+        +V +    G SL  ++         Q
Sbjct: 270 RSLAILSSSGVALLEALQVATETVSNRRIRLAMEQVRQQVQGGTSLHRALDA------CQ 323

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
           +       +    +  G L++ L  ++         +        E      +   + F 
Sbjct: 324 QFPPLLVNMVGSGEASGTLADMLERVADDQERGFARQVDTAMALFEPLMILVMGAVVLFI 383

Query: 140 VSTLVYFT 147
           V  ++   
Sbjct: 384 VLAVLLPI 391


>gi|332981711|ref|YP_004463152.1| Type II secretion system F domain-containing protein [Mahella
           australiensis 50-1 BON]
 gi|332699389|gb|AEE96330.1| Type II secretion system F domain protein [Mahella australiensis
           50-1 BON]
          Length = 405

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 58/158 (36%), Gaps = 9/158 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D           ++AG+P+  A+ ++  Q ++  ++     + ++  +G +LS+S+   
Sbjct: 63  RDISVFCRQFSAVIKAGIPIVQALDIMREQVANKSLKEALAEIYQSVQVGKALSDSMEEY 122

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R  P          +    +L G L  +L  ++     +  ++ KV    +       +
Sbjct: 123 PRVFP-----AMLVEMVRVGELSGTLDISLERMADTYEKQYKLQQKVSNAMIYPVVVCAV 177

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             +    V  ++ F  P ++++  +      L      
Sbjct: 178 AIA---VVIFMLIFVVPTFVSMFTDSGMELPLPTRILL 212



 Score = 34.7 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 14/132 (10%), Positives = 41/132 (31%), Gaps = 5/132 (3%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
            N   I+   + +G+ ++ A+ ++ G   + V                + + ++      
Sbjct: 269 ANFAQILSTLLASGIDINQALDIVKGVIKNKVVEGHID-----EFIEDVEQGVTLADTIG 323

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
             +        ++   +  G+L   LA  ++         A      +E      +  ++
Sbjct: 324 KAELFPVMLVQMTRIGEESGSLDAMLAQTAQFYETEAENAATRLTSLIEPAIIVVLGLAI 383

Query: 137 PFCVSTLVYFTS 148
            F V ++     
Sbjct: 384 GFIVISIALPMF 395


>gi|254162914|ref|YP_003046022.1| type II secretion protein GspF [Escherichia coli B str. REL606]
 gi|297520543|ref|ZP_06938929.1| hypothetical type II secretion protein GspF [Escherichia coli OP50]
 gi|242378518|emb|CAQ33303.1| pulF [Escherichia coli BL21(DE3)]
 gi|253974815|gb|ACT40486.1| hypothetical type II secretion protein GspF [Escherichia coli B
           str. REL606]
 gi|253978970|gb|ACT44640.1| hypothetical type II secretion protein GspF [Escherichia coli
           BL21(DE3)]
          Length = 407

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +        L+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQASGVYW 229


>gi|291615062|ref|YP_003525219.1| type II secretion system F domain protein [Sideroxydans
           lithotrophicus ES-1]
 gi|291585174|gb|ADE12832.1| Type II secretion system F domain protein [Sideroxydans
           lithotrophicus ES-1]
          Length = 413

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 6/164 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMV 73
           +       +   ++AG+P+  A+A +   S +PV S   + + E+   G  LS ++ R  
Sbjct: 73  ELMLFSRQMYTLLKAGVPIMRALAGLQESSRNPVFSAMLQDLRESLDSGRELSTALRRHP 132

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           +       S F   +    ++ G L      L   L   K+MK ++++           +
Sbjct: 133 KI-----FSPFYLSMVQVGEMTGMLDVTFLRLYEHLEFEKDMKERIKSAVRYPMFVLVAM 187

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
                 V+  V                    + +  +  ++   
Sbjct: 188 AVAIVIVNIFVIPAFAKVFEGFHAQLPLMTRILMGFSGFMVHYW 231


>gi|289428857|ref|ZP_06430537.1| conserved hypothetical protein [Propionibacterium acnes J165]
 gi|289157858|gb|EFD06081.1| conserved hypothetical protein [Propionibacterium acnes J165]
 gi|313806748|gb|EFS45253.1| conserved hypothetical protein [Propionibacterium acnes HL087PA2]
 gi|313817517|gb|EFS55231.1| conserved hypothetical protein [Propionibacterium acnes HL046PA2]
 gi|313822021|gb|EFS59735.1| conserved hypothetical protein [Propionibacterium acnes HL036PA1]
 gi|313824429|gb|EFS62143.1| conserved hypothetical protein [Propionibacterium acnes HL036PA2]
 gi|313826450|gb|EFS64164.1| conserved hypothetical protein [Propionibacterium acnes HL063PA1]
 gi|314926543|gb|EFS90374.1| conserved hypothetical protein [Propionibacterium acnes HL036PA3]
 gi|314961392|gb|EFT05493.1| conserved hypothetical protein [Propionibacterium acnes HL002PA2]
 gi|314980265|gb|EFT24359.1| conserved hypothetical protein [Propionibacterium acnes HL072PA2]
 gi|314987404|gb|EFT31495.1| conserved hypothetical protein [Propionibacterium acnes HL005PA2]
 gi|314989055|gb|EFT33146.1| conserved hypothetical protein [Propionibacterium acnes HL005PA3]
 gi|315082690|gb|EFT54666.1| conserved hypothetical protein [Propionibacterium acnes HL027PA2]
 gi|315086397|gb|EFT58373.1| conserved hypothetical protein [Propionibacterium acnes HL002PA3]
 gi|315087884|gb|EFT59860.1| conserved hypothetical protein [Propionibacterium acnes HL072PA1]
 gi|327333934|gb|EGE75651.1| hypothetical protein HMPREF9337_00443 [Propionibacterium acnes
           HL096PA3]
 gi|327445235|gb|EGE91889.1| hypothetical protein HMPREF9568_01461 [Propionibacterium acnes
           HL013PA2]
 gi|332674640|gb|AEE71456.1| hypothetical protein PAZ_c02530 [Propionibacterium acnes 266]
          Length = 256

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 60/171 (35%), Gaps = 5/171 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            +   A   +   V  G   S A+  +             +    Q +G S+S+++    
Sbjct: 83  REVARATRALAGRVSVGEIPSVALEHVADDVE-----VLAQARRAQAVGGSVSDALIATS 137

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R   +  +   +    + +  G  L+ A  +++     R  ++A + +    A+AS  I+
Sbjct: 138 RQPGMAGLVPLAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIM 197

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           G LP     + +      M  L     G   L  +     +G++    + +
Sbjct: 198 GLLPLVGLLMGHVVGAHPMVFLTTTWLGRACLLGSTLLACVGVLWSESLAD 248


>gi|261211521|ref|ZP_05925809.1| type 4 fimbrial assembly protein PilC [Vibrio sp. RC341]
 gi|260839476|gb|EEX66102.1| type 4 fimbrial assembly protein PilC [Vibrio sp. RC341]
          Length = 408

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 47/149 (31%), Gaps = 6/149 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   +  G+P+  A+ ++        ++S   ++ +    G  LS+++  
Sbjct: 67  TKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKGVEAGTPLSKAMRT 126

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    ++ GNL E    L+      + ++AKV    +       
Sbjct: 127 AS-----PHFDALYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVL 181

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
           +   + + + T+V             +  
Sbjct: 182 VALGVSYLMLTMVIPEFESMFKGFGAELP 210



 Score = 36.6 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/131 (9%), Positives = 36/131 (27%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +  S  AG+P+  ++      S +         V      G+ +  ++        
Sbjct: 277 FSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVHRDTAAGMPMYIAMRN------ 330

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +        + +  +  G L + L  ++ I     +         +E     ++   + 
Sbjct: 331 TEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGIVVG 390

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 391 GLVVAMYLPIF 401


>gi|254230334|ref|ZP_04923721.1| type IV pilus assembly protein TapC [Vibrio sp. Ex25]
 gi|262393317|ref|YP_003285171.1| type 4 fimbrial assembly protein PilC [Vibrio sp. Ex25]
 gi|151937158|gb|EDN56029.1| type IV pilus assembly protein TapC [Vibrio sp. Ex25]
 gi|262336911|gb|ACY50706.1| type 4 fimbrial assembly protein PilC [Vibrio sp. Ex25]
          Length = 407

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 50/161 (31%), Gaps = 12/161 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           + H +K R      D       I   +  G+P+  A+ ++        ++S    V    
Sbjct: 60  LSHRVKGR------DITVFTRQISTMLITGVPLVQALKLVSENHKKAEMKSILMSVTRAV 113

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G  +S+++     +            +    +  GNL+E    L+      + ++AKV
Sbjct: 114 EAGTPMSKAMRTASEHFDPLYTD-----LIATGEQSGNLAEVFERLATYREKNEQLRAKV 168

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
               +       +   + F + T V             D  
Sbjct: 169 IKALIYPAMVVLVALGVSFIMLTKVIPEFEKMFVGFGADLP 209



 Score = 35.1 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 13/136 (9%), Positives = 37/136 (27%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72
                    +  S  AG+P+  ++      S +         V      G+ +  ++   
Sbjct: 271 AAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNLHYQLAIEEVYRDTAAGMPMYVAMRN- 329

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          + +  +  G L + L  ++ I     +      +  +E     ++
Sbjct: 330 -----CNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFL 384

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V+ +     
Sbjct: 385 GIVVGGLVTAMYLPIF 400


>gi|331674520|ref|ZP_08375280.1| general secretion pathway protein F [Escherichia coli TA280]
 gi|331068614|gb|EGI40009.1| general secretion pathway protein F [Escherichia coli TA280]
          Length = 407

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +        L+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQANGVYW 229


>gi|11498600|ref|NP_069828.1| hypothetical protein AF0995 [Archaeoglobus fulgidus DSM 4304]
 gi|2649600|gb|AAB90246.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 651

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 60/184 (32%), Gaps = 7/184 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQH-L 61
           I  R +K     P+A+  +    + G+ +   +  +    +    V  E  R++     L
Sbjct: 130 ISDRKSKINRILPHAIIFMYSLSKGGMSLVQILKALADNHEVYGEVSKEASRILWEVEGL 189

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L  +++  V   P      F   +      GG+++      +    +R     K   
Sbjct: 190 GKDLRTALAEAVDTTPSDNFKEFLHGLITIIDSGGDITRYFEERAEFYFERARQDQKSFL 249

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
             +   A  +I   +   +  ++       +  ++       +  +    + IG  +  +
Sbjct: 250 EFLGLMAETYITAFVAGPLFLIII----QTVMSVMGQTNEVAMFSIIYFVIPIGSFMFAM 305

Query: 182 MINF 185
           +I  
Sbjct: 306 LIKL 309



 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 67/157 (42%), Gaps = 3/157 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L ++    ++   P  L  +  +  +G+P+  A+ +I    + P+R E  ++      G+
Sbjct: 424 LGRRGVKTYMRLTPIFLSKLASANESGMPIYRAITMIAKTDTSPLRKEIAKIKADLDWGI 483

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           SLS+++ R    + + E+S   T+++   +  GN++E L   ++     + ++ +     
Sbjct: 484 SLSDALVRFANRLKIFEISRTMTLLNEALKSTGNVTEVLMISAKDATSAELLRRERMTNM 543

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
                   I+    F    +VY  S  +++ L     
Sbjct: 544 ---FMYVIIVYIAFFVFIGIVYIISSTFLSTLAESAA 577


>gi|148272482|ref|YP_001222043.1| putative pilus assembly protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830412|emb|CAN01347.1| conserved membrane protein, putative pilus assembly protein
           [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
          Length = 316

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 55/140 (39%), Gaps = 2/140 (1%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             + P  L+ +  S+ AG  + DA+  +    S  +  E  RV+     G+ ++ +   +
Sbjct: 173 QAELPTVLEFLALSLAAGEGLLDALRRVARVGSGELAMELGRVVADVGTGIPVTRAFDDL 232

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R + +  VS     ++   + G  L+E L   ++  R+    K ++   +   +    +
Sbjct: 233 ARRLAMPAVSRLVDQLAGSLERGTPLAEVLRAQAQDAREVA--KRELLESAGRKEVGMLV 290

Query: 133 IGSLPFCVSTLVYFTSPGYM 152
                    T+V+   PG  
Sbjct: 291 PLVFLILPLTIVFALFPGIF 310


>gi|152983555|ref|YP_001350203.1| hypothetical protein PSPA7_4867 [Pseudomonas aeruginosa PA7]
 gi|150958713|gb|ABR80738.1| hypothetical protein PSPA7_4867 [Pseudomonas aeruginosa PA7]
          Length = 303

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 60/147 (40%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           +KH  K R A   ++    + +I     AGL V  A+ V+  +       +  E    + 
Sbjct: 141 LKHFAKARRALIAEEMILFVQLIRILFDAGLTVEQALRVVCQEGRGITPQLARELDLALA 200

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ L+E +  + R + +  ++    V+    + GG+    L  L ++  DR+    
Sbjct: 201 RAGNGIDLAEELEALARRLQVDPLNDCCGVLRQMLRQGGSARGTLLTLKQLFEDRRLTTL 260

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +   + AK S  ++  L   +  ++
Sbjct: 261 QERIGKLSAKMSLVMMVLLFPALLIVL 287


>gi|223040652|ref|ZP_03610922.1| type II secretion system protein [Campylobacter rectus RM3267]
 gi|222878110|gb|EEF13221.1| type II secretion system protein [Campylobacter rectus RM3267]
          Length = 416

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 62/160 (38%), Gaps = 9/160 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
           ++   A   +     AG+ + D++  +   + D  +++ F  + +  + G SL+++I++ 
Sbjct: 73  NNLIAAFRQLSVMTNAGISIHDSIKEVSKSTEDKRLKAIFATLNDDLNQGQSLTDAITKF 132

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                  E+      +    +  GN+SE+L  LS IL +    + K +           +
Sbjct: 133 -----KGELGDVVIAMVKLGESTGNMSESLHKLSEILHEVWENQRKFKKAMRYPI---IV 184

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
           + ++      L+ F  P +  +         +  V    +
Sbjct: 185 MSAMAIAFVILMIFVVPQFREIFEQLGANLPVPTVILLSI 224


>gi|187251609|ref|YP_001876091.1| TadC subunit [Elusimicrobium minutum Pei191]
 gi|186971769|gb|ACC98754.1| TadC subunit [Elusimicrobium minutum Pei191]
          Length = 296

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 2/148 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIET 58
           +   I+KR    L +F   +D+    + +GL    A   I+  + +   +  E  +++  
Sbjct: 135 VNSKIQKRQRDMLGNFSTTVDLAALIIESGLDYMTAFDRIIRIAKEKTVLEEELDKMLNE 194

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             LG S  E++ R+     +QE+  F  +I    +LG +L + L N S  LR R+  KA+
Sbjct: 195 VKLGYSRREALERLANRTGVQEIRSFVGLIIQSDELGTSLVDLLRNFSIDLRFRRMNKAE 254

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYF 146
             A     K    +   +   V  L+  
Sbjct: 255 KLAAQASTKMLVPLFLFIFPTVFILILA 282


>gi|456044|gb|AAC36925.1| homologous to PilC of Pseudomonas aeruginosa [Escherichia coli]
          Length = 380

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/182 (11%), Positives = 54/182 (29%), Gaps = 22/182 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 41  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 100

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 101 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 155

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +     +L+       +   ++M
Sbjct: 156 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLM 215

Query: 180 RL 181
           R 
Sbjct: 216 RR 217


>gi|256019115|ref|ZP_05432980.1| General secretion pathway protein F [Shigella sp. D9]
 gi|332280220|ref|ZP_08392633.1| general secretion pathway protein F [Shigella sp. D9]
 gi|332102572|gb|EGJ05918.1| general secretion pathway protein F [Shigella sp. D9]
          Length = 407

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +        L+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQASGVYW 229


>gi|82545403|ref|YP_409350.1| type II secretion protein [Shigella boydii Sb227]
 gi|81246814|gb|ABB67522.1| putative type II secretion protein [Shigella boydii Sb227]
 gi|332091447|gb|EGI96532.1| general secretion pathway protein F [Shigella boydii 3594-74]
          Length = 407

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVMLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMV 178
             +   + T V        + L +        L+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPSSTRALIAMSDALQASGVYW 229


>gi|260771242|ref|ZP_05880169.1| type 4 fimbrial assembly protein PilC [Vibrio furnissii CIP 102972]
 gi|260613839|gb|EEX39031.1| type 4 fimbrial assembly protein PilC [Vibrio furnissii CIP 102972]
          Length = 408

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 57/180 (31%), Gaps = 14/180 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           + H +K R      D       +   +  G+P+  A+ ++        ++S   +V +  
Sbjct: 61  LTHRVKTR------DITLLTRQLSTMLTTGVPIVQALKLVGDNHRKAEMKSILAQVTKGV 114

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G  +S+++                  +    +  GNL+E    L+      + ++AKV
Sbjct: 115 EAGTPMSKAMRTAS-----PHFDALYVDLIATGEQSGNLAEVFERLATYREKSEQLRAKV 169

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIM 177
               +       +   + + + T+V             +       +L ++       + 
Sbjct: 170 IKALIYPAMVMLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQILKLSHGVQAYSLW 229


>gi|229587498|ref|YP_002860536.1| bacterial type II secretion system protein F domain protein
           [Clostridium botulinum Ba4 str. 657]
 gi|229260271|gb|ACQ51308.1| bacterial type II secretion system protein F domain protein
           [Clostridium botulinum Ba4 str. 657]
          Length = 308

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 78/187 (41%), Gaps = 1/187 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++H    R  +    F NAL  I   +R    +S+A+  +    + P++ EF  +I+   
Sbjct: 120 IEHKGTNRVIEINKQFINALIDIGDYLRIDSNLSNAIKNVTPNVAYPLKGEFIYIIKEID 179

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
              ++  ++      +    V+ +   +   +    N+S+     S  +R R     K+ 
Sbjct: 180 SNTNILNALKHFDYRVNSTVVNTWVDSMLFANDKRANVSDLCIKHSAKVRKRLTQNEKLN 239

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A     K  + +I  +   ++ +++ +SP + + L ++P G +L  +      +  + + 
Sbjct: 240 AKLSGLKFISIMIMIILLGMAFMMFGSSPEFKDFL-HEPFGRVLALITGISYTVTTVFIF 298

Query: 181 LMINFDV 187
             IN +V
Sbjct: 299 RKINKEV 305


>gi|327401124|ref|YP_004341963.1| Type II secretion system F domain-containing protein [Archaeoglobus
           veneficus SNP6]
 gi|327316632|gb|AEA47248.1| Type II secretion system F domain protein [Archaeoglobus veneficus
           SNP6]
          Length = 647

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 65/184 (35%), Gaps = 7/184 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQH-L 61
           I  R +K     P+A+  +    R G+ + +    +    +    V  E  R++     L
Sbjct: 131 ISDRKSKIDRALPHAITFMYSLSRGGMNLIEIFRALSEYYEVYSEVSREAARILRDMEVL 190

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L  +++  V   P +    F   +      GG++++ L + +    +R     K   
Sbjct: 191 GKDLRTALADAVELSPSENFKEFLHGLITIIDSGGDITKYLEDRADFYLERARQDQKNFL 250

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
             +   A ++I   +   +  ++       + V++       L  V    + IG     +
Sbjct: 251 EFLGLMAESYITAFVAGPLFLIII----QTVMVVMGQGDETTLYAVIYLVIPIGSFFFAM 306

Query: 182 MINF 185
           +I  
Sbjct: 307 VIKL 310



 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 68/143 (47%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +K+  + L   P  L+ +  +  +G+P+  A+A+I    + P++ E +++      G+SL
Sbjct: 426 RKKAKRTLRLTPIFLNKLASANESGMPIYRAIAMIAKTDTTPLKKEIQKIKSDLDWGISL 485

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           ++++ R    + + E+S   T+++   +  GN++E L   ++   + + ++ +  +    
Sbjct: 486 NDALIRFANRLRVFELSRTITLLNEALKSTGNVTEVLMISAKDASNAELLRRERLSNMFM 545

Query: 126 AKASAWIIGSLPFCVSTLVYFTS 148
                +I   +   +  ++  T 
Sbjct: 546 YVIIIYISFFVFIGIVYIITTTF 568


>gi|218288158|ref|ZP_03492457.1| type II secretion system protein [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241517|gb|EED08690.1| type II secretion system protein [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 412

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 57/162 (35%), Gaps = 9/162 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
            +DF          VRAG+P+  A+ V+  Q    P++     V      G +L ES++ 
Sbjct: 67  SEDFVPFCRQFATLVRAGVPLVPALQVLEEQLRKGPLKKAVGEVAAKVEGGTALWESLAE 126

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P          +    +  G+L E L + +R    ++   +K+++  M       
Sbjct: 127 YPKVFPP-----MFVQMVRAGEASGSLEEVLESTARFEEGQRETVSKIKSALMYPAL--- 178

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           +          L+    P +++V  +      L      F  
Sbjct: 179 VSLMSVLVAGFLMINVIPSFVSVFASMHVTLPLPTRIVLFSA 220


>gi|71902056|ref|ZP_00684097.1| type II secretion system protein [Xylella fastidiosa Ann-1]
 gi|71728184|gb|EAO30374.1| type II secretion system protein [Xylella fastidiosa Ann-1]
          Length = 405

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 56/171 (32%), Gaps = 7/171 (4%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVR 74
             +    +   + AG P+  A++++     +         V +    G  LS ++ R   
Sbjct: 68  LIHFTQQLAALLGAGQPLDRALSILTDLPDNEKSRLIIGDVCDIVRGGTPLSIALER--- 124

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                  S     ++   + GGN+ E L  L+  L   + ++AKV    +      +++G
Sbjct: 125 --QHGVFSRLYVTMARAGESGGNMPETLQRLADYLERNQVVRAKVINALIYPVILIFVVG 182

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
                +   V          L +        GV A    IG     L+   
Sbjct: 183 GALAFLLGYVVPQFGAMYESL-DVALPWFTQGVLALGHFIGDWWFLLLAVI 232


>gi|306821151|ref|ZP_07454767.1| general secretory pathway protein F [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550844|gb|EFM38819.1| general secretory pathway protein F [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 402

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/172 (12%), Positives = 49/172 (28%), Gaps = 8/172 (4%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K+R      D       +   + AG+P+   +  +  Q    +  E    I         
Sbjct: 58  KRRIK--SKDLSVFSKQLYTMLHAGMPLLTCIETLKDQVQSKLLREKLIEIYQDLQKG-- 113

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             +I         +        +    +L GN+   L NLS   +    ++A++++  + 
Sbjct: 114 --AIFSTALQKHGEAFPELFISMVRSGELTGNMDGVLNNLSTHYQKEARLQAQIRSAMIY 171

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
                 +   +   +   +      +         G     V  +  +I   
Sbjct: 172 PIIVLMVAIGVTVFMLVKLVPMFKSFFR--GKALPGITQFVVNLSDFMISKW 221



 Score = 36.6 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/130 (9%), Positives = 33/130 (25%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+P+  A+      +++    +            S      + +   P 
Sbjct: 270 FASTLSVLISSGIPIIQAIESSGQVTNNVFIQKNMAYAIDNIKKGSPMSVELKKLEIFPP 329

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G +   L   S    +      K     ME      + G +  
Sbjct: 330 -----MMISMLKIGEESGAIDSMLQKTSDFFEEELEEAIKRMTSMMEPLIIILVGGIVAV 384

Query: 139 CVSTLVYFTS 148
            + ++     
Sbjct: 385 VLISVYLPMF 394


>gi|300923615|ref|ZP_07139644.1| general secretion pathway protein F [Escherichia coli MS 182-1]
 gi|300420132|gb|EFK03443.1| general secretion pathway protein F [Escherichia coli MS 182-1]
          Length = 407

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 54/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSNSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMV 178
             +   + T V        + L +        L+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPVSTRTLIAMSDALQASGVYW 229


>gi|62178711|ref|YP_215128.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224581987|ref|YP_002635785.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|62126344|gb|AAX64047.1| putative component in type IV pilin biogenesis [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|224466514|gb|ACN44344.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322713164|gb|EFZ04735.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 400

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q          R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P          +    +L G L+E    L+R  + ++ +   V+           
Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPV---I 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183
           I+      V  +++F  P +  +  +      LL      +   G     L++
Sbjct: 169 ILAMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGWLIL 221


>gi|90407293|ref|ZP_01215479.1| type IV pilus biogenesis protein PilC [Psychromonas sp. CNPT3]
 gi|90311576|gb|EAS39675.1| type IV pilus biogenesis protein PilC [Psychromonas sp. CNPT3]
          Length = 410

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 52/165 (31%), Gaps = 12/165 (7%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             I   + AG+P+   +++I   + + P+R     V      G  +S+++    +     
Sbjct: 77  RQIATMLGAGVPLVQTLSLIAHSTDNVPLRELMSSVSNEISTGTPMSKALREHPK----- 131

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                   +    +  G L      ++      + +K+K++       A   + G +   
Sbjct: 132 YFDDLYCDLVDAGEQSGALDTIYDRIAIYKEKSEALKSKIKKAMFYPTAVLVVAGLVTLL 191

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAA------FMLIGIMV 178
           +   V             +     L  +  +      + LIGI  
Sbjct: 192 LLLFVIPQFKTIFAGFGAELPAFTLFVLHISDLVKEYWYLIGIFF 236



 Score = 35.9 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 42/131 (32%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +  +  AG+P+ DA+    G S + V      ++      G+ ++ ++        
Sbjct: 279 FARTLSTTFAAGIPLIDALISASGASGNYVYRSAITKIRTEVMAGMQMNVAMK------M 332

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                   + + +  +  GNL   L+ ++ I   + +         +E      +   + 
Sbjct: 333 TGTFPEMLSQMVMIGEESGNLDNMLSKVADIYEQQVDDAVDALTSLLEPFIMVVLGIIVG 392

Query: 138 FCVSTLVYFTS 148
             +  +     
Sbjct: 393 GLIVAMYLPIF 403


>gi|21227039|ref|NP_632961.1| putative flagella-like protein J [Methanosarcina mazei Go1]
 gi|20905361|gb|AAM30633.1| putative flagella related protein J [Methanosarcina mazei Go1]
          Length = 649

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 62/163 (38%), Gaps = 4/163 (2%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  +  D  P  L  +      G+ ++DA+A+    +   ++SE +R +       +L 
Sbjct: 437 RRIRQIEDQVPEFLKRLASINGTGILLADAIAITAQSNMGRLKSEIKRTVADIRWNSNLV 496

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++ R    +         ++I+  S+  G++ + ++ ++    D  +++  ++      
Sbjct: 497 DAMKRFEARIRTNMTRRSLSLIAKASESTGDIHQVISTVA----DDADIEKNLKKERSAE 552

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
                 I  + F V  ++ +    +    ++      +     
Sbjct: 553 MFIYVFIIFVTFFVFLVIVYVLAAFFLPALDGSSNPAMSMGGF 595



 Score = 48.2 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 56/181 (30%), Gaps = 6/181 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVR-AGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQ 59
                R        P+A   +    R  G+ + D +  +   S        EF  ++   
Sbjct: 131 MKADSRKRAINASMPHATAFLYVLQRGGGMTIYDIMKSLSKHSHLYGTTAREFGNIVRDI 190

Query: 60  HLGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
                 L +S+       P ++       +      GG+++  L N + + +   N + K
Sbjct: 191 EYFGKDLQDSLWDSADRTPSEQFKDLVDGLISIVSSGGDITLYLKNKTDLYKSNANKEHK 250

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
               ++   A  +I   +   +  +V       ++     P    +L   A      I +
Sbjct: 251 RFLETLGLLAEVYITVFVVGPLFLMVILVVMNMIDN--GGPTQLYVLVYGAIPFGTMIFL 308

Query: 179 M 179
           +
Sbjct: 309 V 309


>gi|282853287|ref|ZP_06262624.1| conserved hypothetical protein [Propionibacterium acnes J139]
 gi|282582740|gb|EFB88120.1| conserved hypothetical protein [Propionibacterium acnes J139]
 gi|314965660|gb|EFT09759.1| conserved hypothetical protein [Propionibacterium acnes HL082PA2]
 gi|314982824|gb|EFT26916.1| conserved hypothetical protein [Propionibacterium acnes HL110PA3]
 gi|315091475|gb|EFT63451.1| conserved hypothetical protein [Propionibacterium acnes HL110PA4]
 gi|315094229|gb|EFT66205.1| conserved hypothetical protein [Propionibacterium acnes HL060PA1]
 gi|315104881|gb|EFT76857.1| conserved hypothetical protein [Propionibacterium acnes HL050PA2]
 gi|327329208|gb|EGE70968.1| hypothetical protein HMPREF9341_00681 [Propionibacterium acnes
           HL103PA1]
          Length = 256

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 58/171 (33%), Gaps = 5/171 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            D   A   +   V  G   S A+  +             +      +G S+S+++    
Sbjct: 83  RDVARATRALAGRVSVGEIPSVALEHVADDVE-----VLAQARRAHAVGGSVSDALIATS 137

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R   +  +   +    + +  G  L+ A  +++     R  ++A + +    A+AS  I+
Sbjct: 138 RQPGMAGLVPLAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIM 197

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           G LP     + +         L     G   L  +     +G++    + +
Sbjct: 198 GLLPLVGLLMGHVVGAHPTVFLTTTWLGRACLLGSTLLACVGVLWSESLAD 248


>gi|332702381|ref|ZP_08422469.1| general secretion pathway protein F [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552530|gb|EGJ49574.1| general secretion pathway protein F [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 433

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/175 (13%), Positives = 55/175 (31%), Gaps = 13/175 (7%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65
           KR  +   +       +   + AGLP+   +  I+ Q     + +   +V E    G SL
Sbjct: 89  KRVKR--SELAATTRQMSTLLSAGLPLEQVLTAILAQIKGTALYTVLAQVRERVKEGASL 146

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S ++++                +    +  G L   +A L+        ++ K+ +    
Sbjct: 147 SSALAQHPGVFG-----TTYATMVQAGEQSGALELVMARLADFAEQEMELRRKIWSAITY 201

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI--MV 178
                ++   +   V  L+ +  P    + ++  R   L       +        
Sbjct: 202 PLLMLFVGLGI---VFFLMVYVVPRITEIFVDLQRALPLPTTILIAVSTAFRDWW 253


>gi|320666865|gb|EFX33841.1| hypothetical protein ECOSU61_07037 [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 407

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/166 (10%), Positives = 45/166 (27%), Gaps = 6/166 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           D       +   V+A +P+   +  +  QS           + +                
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSWIQ----EGYTLSDSL 123

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
               +        +    +  G+L   L  L+     R+ +K+++    +       +  
Sbjct: 124 REHSRVFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVAT 183

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
            +   + T V        + L +        L+ ++      G+  
Sbjct: 184 GVVTILLTAVVPKIIEQFDHLGHALPATTRALIAMSDTLQASGVYW 229


>gi|293416405|ref|ZP_06659044.1| general secretion pathway protein F [Escherichia coli B185]
 gi|291431761|gb|EFF04744.1| general secretion pathway protein F [Escherichia coli B185]
          Length = 407

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 54/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +        L+ ++      G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPATTRALIAMSDTLQASGVYW 229


>gi|238897544|ref|YP_002923223.1| putative tight adherance operon protein C [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229465301|gb|ACQ67075.1| putative tight adherance operon protein C [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 275

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 65/162 (40%), Gaps = 4/162 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +K +I ++T   L  FP  +D+    ++AG+ + +A+                 +I+   
Sbjct: 115 IKSIIFRKTRLMLSSFPFFIDMTAACIQAGMTIENALTYSAENFYKINEDIASLIIQVVR 174

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +     L  ++  + + +   E+  F   +      G ++ E L   S  +R+ + M+++
Sbjct: 175 KAEVHGLQNAMKTLYQDVSFLEIKMFCNAVQNSVDFGSSVYEHLMKFSTDIREIQLMESE 234

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
            +   +  K +  +   +   +  ++   S   + + + DP 
Sbjct: 235 EKISKLSVKLTLILFLFI--LIPFILLIISTTALELFLGDPF 274


>gi|294139875|ref|YP_003555853.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12]
 gi|293326344|dbj|BAJ01075.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12]
          Length = 293

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 66/160 (41%), Gaps = 5/160 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +K   +  +++     P+ALD++V  V +GL +      +  +    S  +  E+     
Sbjct: 132 VKFRARLVSSRIAGATPDALDLMVVCVESGLTLEAVFGRVGQEMVNFSPELSREWLITEA 191

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              L  S  +++  +     + E+      +S   + G  +++++  ++   R  + +  
Sbjct: 192 ELRLLDSRPQALKNLALRTGIIEIENMVIALSQAEKYGSPIAKSMRLIASDSRQHQYLAL 251

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + +   + AK S  ++  +   V  L+   +P  + ++ +
Sbjct: 252 EEKVGKIPAKMSMPLVVLVMIPVVVLI--VAPTIIELMTS 289


>gi|200387629|ref|ZP_03214241.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199604727|gb|EDZ03272.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 400

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q          R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P          +    +L G L+E    L+R  + ++ +   V+           
Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPA---I 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183
           I+      V  +++F  P +  +  +      LL      +   G     L++
Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGAAWGWLIL 221


>gi|239907482|ref|YP_002954223.1| general secretion pathway protein F [Desulfovibrio magneticus RS-1]
 gi|239797348|dbj|BAH76337.1| general secretion pathway protein F [Desulfovibrio magneticus RS-1]
          Length = 409

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 54/164 (32%), Gaps = 6/164 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           +   A  ++   + AGLP+  A+A ++ Q      +  F  ++E    G   S +++   
Sbjct: 71  ELLAATQVLATLLEAGLPLDKALAALIEQMRAGRGKWVFSHILERIREGQDFSTALAAYP 130

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
              P          +   ++  G L   L NL+  L  +  +   +QA            
Sbjct: 131 AVFPP-----TYVSMVRSAEATGMLPIVLGNLAEYLDRQTQLARTLQAALAYPAFMFVFG 185

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
            ++   +   V          L        ++ +AA+  +    
Sbjct: 186 LAVMALLLAYVIPEVTRIFVDLRRALPLPTVILIAASDFVRAWW 229


>gi|229521254|ref|ZP_04410674.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae TM 11079-80]
 gi|229341786|gb|EEO06788.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae TM 11079-80]
          Length = 408

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 49/149 (32%), Gaps = 6/149 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   +  G+P+  A+ ++        ++S   ++ ++   G  LS+++  
Sbjct: 67  SKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRT 126

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              +            +    ++ GNL E    L+      + ++AKV    +       
Sbjct: 127 ASAH-----FDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVL 181

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
           +   + + + T+V             +  
Sbjct: 182 VALGVSYLMLTMVIPEFESMFKGFGAELP 210



 Score = 36.3 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/131 (9%), Positives = 35/131 (26%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +  S  AG+P+  ++      S +         V      G+ +  ++        
Sbjct: 277 FSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAAGMPMYIAMRN------ 330

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     + +  +  G L + L  ++ I     +         +E     ++   + 
Sbjct: 331 TDAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVG 390

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 391 GLVVAMYLPIF 401


>gi|218698526|ref|YP_002406155.1| type IV pilin biogenesis protein [Escherichia coli IAI39]
 gi|218368512|emb|CAR16247.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli IAI39]
          Length = 400

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 56/181 (30%), Gaps = 22/181 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q S        + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHSSKQWQALLQSLAYDLEQGIAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +   G +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANKLLM 235

Query: 180 R 180
           R
Sbjct: 236 R 236


>gi|289424541|ref|ZP_06426324.1| type II secretion system F domain protein [Propionibacterium acnes
           SK187]
 gi|289428815|ref|ZP_06430495.1| type II secretion system F domain protein [Propionibacterium acnes
           J165]
 gi|295129802|ref|YP_003580465.1| type II secretion system F domain protein [Propionibacterium acnes
           SK137]
 gi|289155238|gb|EFD03920.1| type II secretion system F domain protein [Propionibacterium acnes
           SK187]
 gi|289157816|gb|EFD06039.1| type II secretion system F domain protein [Propionibacterium acnes
           J165]
 gi|291377230|gb|ADE01085.1| type II secretion system F domain protein [Propionibacterium acnes
           SK137]
 gi|313814294|gb|EFS52008.1| type II secretion system F domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313834346|gb|EFS72060.1| type II secretion system F domain protein [Propionibacterium acnes
           HL056PA1]
 gi|314974780|gb|EFT18875.1| type II secretion system F domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314980264|gb|EFT24358.1| type II secretion system F domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314985439|gb|EFT29531.1| type II secretion system F domain protein [Propionibacterium acnes
           HL005PA1]
 gi|314987403|gb|EFT31494.1| type II secretion system F domain protein [Propionibacterium acnes
           HL005PA2]
 gi|315082165|gb|EFT54141.1| type II secretion system F domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315086398|gb|EFT58374.1| type II secretion system F domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315097273|gb|EFT69249.1| type II secretion system F domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315106264|gb|EFT78240.1| type II secretion system F domain protein [Propionibacterium acnes
           HL030PA1]
 gi|327445234|gb|EGE91888.1| type II secretion system F domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327447319|gb|EGE93973.1| type II secretion system F domain protein [Propionibacterium acnes
           HL043PA1]
 gi|328758434|gb|EGF72050.1| type II secretion system F domain protein [Propionibacterium acnes
           HL020PA1]
 gi|332674641|gb|AEE71457.1| hypothetical protein PAZ_c02540 [Propionibacterium acnes 266]
          Length = 249

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 7   KRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +R  +      P AL ++  ++ AGLP+  AV  +      P   + RR+  +   G+  
Sbjct: 101 RRMEQHRAAQLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVPD 160

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S + + +     ++     +  +S     G  +SE L+  +  L+     K + +A    
Sbjct: 161 SRAWNDLA---SVEVWRDPAQDVSRAVDSGEGISELLSAHAAQLQVAAAEKTEKKARKAG 217

Query: 126 AK-ASAWIIGSLPFCVSTLVYFTSPGYM 152
                  +   LP  +   V     G +
Sbjct: 218 VDAIGPLVCCHLPAFLLVGVVPIIAGMV 245


>gi|27378607|ref|NP_770136.1| hypothetical protein blr3496 [Bradyrhizobium japonicum USDA 110]
 gi|27351755|dbj|BAC48761.1| blr3496 [Bradyrhizobium japonicum USDA 110]
          Length = 302

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 65/147 (44%), Gaps = 5/147 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +  L ++  A      P+ +D++V    AG+ +   +A +  +    + P+      +++
Sbjct: 141 LAVLKRRFDAAIRVGTPDMIDLLVVCSEAGMGLESGLARVAQEMSETNPPMARVLHCLLD 200

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +  + S++  ++        +  F T+++   Q G  + +AL N++  LR  +  K 
Sbjct: 201 DLRILPNRSDAFDKLGTTSDG--LRRFGTMVAQSLQYGTPVGQALRNIAVDLRRERITKL 258

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +A  + AK +  ++  L   +  ++
Sbjct: 259 EERAHKLGAKLTIPMVLFLLPAMFVVL 285


>gi|134295599|ref|YP_001119334.1| type II secretion system protein [Burkholderia vietnamiensis G4]
 gi|134138756|gb|ABO54499.1| type II secretion system protein [Burkholderia vietnamiensis G4]
          Length = 330

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 61/158 (38%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57
           ++     R    +D+ P  +D++      GL +  ++ V+       +    SE      
Sbjct: 168 VQRRAAARRQSVIDELPLFVDMLRLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEVGIAQR 227

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+ R+      +++   + ++    + GG + E L      LR+ +    
Sbjct: 228 QFAAGRTRDQSMQRLSSGFDNEDLRAIARLMVQVDKHGGAVQEPLKQFGDRLRETRRAML 287

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +   +  K +  ++ +L   +  L+    PG + V+
Sbjct: 288 RDRIGRLTVKMTGVMVVTLLPAL--LIVTAGPGLLAVM 323


>gi|308273128|emb|CBX29731.1| hypothetical protein N47_F14260 [uncultured Desulfobacterium sp.]
          Length = 403

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/173 (12%), Positives = 49/173 (28%), Gaps = 5/173 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             D           + AGLP+   + ++  Q  +       + I+      S        
Sbjct: 62  ESDIIIFARQFSTMIDAGLPILQCLDILYSQQENKTFKIMLKKIKESVESGS----TLAD 117

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 ++     T +    + GG L   L  L+  +     +K++V+   +    +  I
Sbjct: 118 ALKKYPEQFDDLFTNMIAAGETGGVLDVILQRLAAYIEKASKLKSQVKGAMVYPAVTLII 177

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              +   +   V             +        V A    +   ++ L++  
Sbjct: 178 AFIVLVVILVFVIPVFQQMFKDFGGELP-VPTQVVVAMSEFVKTKIIYLIVAI 229



 Score = 45.1 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/130 (8%), Positives = 37/130 (28%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+ + +A+ ++   S + +            +   +SE  +        
Sbjct: 271 FTRTMSTMLSSGVSILEALDIVAKTSGNKIIE-----KAIYDVRSGISEGRTMSEPLWES 325

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G L   L+ ++    +  +         +E     ++  +L  
Sbjct: 326 GIFPSMVCQMISVGESTGALDVMLSKIADFYDEEVDQAVSNLMSLIEPFMLVFLGVTLGG 385

Query: 139 CVSTLVYFTS 148
            V  +     
Sbjct: 386 LVIAMYLPIF 395


>gi|157162436|ref|YP_001459754.1| general secretion pathway protein F [Escherichia coli HS]
 gi|188493519|ref|ZP_03000789.1| general secretion pathway protein F [Escherichia coli 53638]
 gi|157068116|gb|ABV07371.1| general secretion pathway protein F [Escherichia coli HS]
 gi|188488718|gb|EDU63821.1| general secretion pathway protein F [Escherichia coli 53638]
          Length = 407

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +        L+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPATTRALIAMSDALQASGVYW 229


>gi|331654569|ref|ZP_08355569.1| general secretion pathway protein F [Escherichia coli M718]
 gi|331047951|gb|EGI20028.1| general secretion pathway protein F [Escherichia coli M718]
          Length = 407

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +        L+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPATTRALIAMSDALQASGVYW 229


>gi|229824690|ref|ZP_04450759.1| hypothetical protein GCWU000182_00038 [Abiotrophia defectiva ATCC
           49176]
 gi|229791019|gb|EEP27133.1| hypothetical protein GCWU000182_00038 [Abiotrophia defectiva ATCC
           49176]
          Length = 404

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 65/178 (36%), Gaps = 8/178 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISR 71
             D       +V  + AG+ V DA+ ++   + + V       V      G +LSE++SR
Sbjct: 62  TRDLSVFCRQLVSMINAGVTVIDALDMLSVSTENKVMAKTITNVRANIQKGETLSEAMSR 121

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P          +    +  G L  A + ++     +  + A ++  S+       
Sbjct: 122 HTKVFP-----SIMISMVAAGEASGKLEVAFSRMAERFEKKAKLDAMLKKASVYPTIVIV 176

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG--IMVMRLMINFDV 187
           +   +   +   +  T     + L  +     +L V  +  +I    +++ ++I F V
Sbjct: 177 VSIIVIIVMLVQIIPTYKSMFDQLGAELPIQTVLAVKLSDFIIAKWYLIIAVLIAFIV 234



 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/140 (11%), Positives = 49/140 (35%), Gaps = 5/140 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
             +   +    +   V AGLP+ +A+ +      + V  +  ++++ + +         +
Sbjct: 264 IKNAASSFARTLSTLVYAGLPMVEALEITANTMDNYVYKQCLKIVKDEVVKGVPMSEPIQ 323

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P          ++   +  G++   L+ L+    +   M  +    ++E      
Sbjct: 324 NSKLFPP-----MVGYMTKIGEETGDVEGMLSRLADYYDEEVEMATQTLMAALEPFIMMV 378

Query: 132 IIGSLPFCVSTLVYFTSPGY 151
           + G +   +S ++      Y
Sbjct: 379 LAGIVIMLISVIMGPMISMY 398


>gi|320354293|ref|YP_004195632.1| Type II secretion system F domain-containing protein [Desulfobulbus
           propionicus DSM 2032]
 gi|320122795|gb|ADW18341.1| Type II secretion system F domain protein [Desulfobulbus
           propionicus DSM 2032]
          Length = 401

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 56/170 (32%), Gaps = 6/170 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   + AGLP+   + ++  Q S+   +     +      G +L++S+ + 
Sbjct: 63  KDIVIFTRQLSTMIDAGLPLVQCLQILGKQQSNATFKKVLLSIQNDVETGTTLADSMRKH 122

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +           + +    +LGG L   L+ L+        ++ K++           I
Sbjct: 123 PK-----VFDNLYSNMIEAGELGGILDTILSRLASFKEKAMALQKKIKGAMTYPVICLAI 177

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
              +   +   V          + +       L V  +  + G ++  LM
Sbjct: 178 SILILIVILVFVIPVFVEMFASMDSALPAVTQLVVDMSDFVKGNIIYILM 227



 Score = 47.4 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 43/131 (32%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   +++G+P+ DA+ V+   S + +      RV E+   G  ++E +        
Sbjct: 271 FTRTLSTMLQSGVPILDALQVVARTSGNKIVERAVLRVSESIAEGRPIAEPLEESG---- 326

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G L   L  ++    +  +   +     +E     ++ G + 
Sbjct: 327 --VFPNMVVQMINVGESVGALDTMLEKIADFYDEEVDQAVENLTAMIEPFMMVFLGGMIG 384

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 385 GLVVAMYLPIF 395


>gi|170766029|ref|ZP_02900840.1| general secretion pathway protein GspF [Escherichia albertii
           TW07627]
 gi|170125175|gb|EDS94106.1| general secretion pathway protein GspF [Escherichia albertii
           TW07627]
          Length = 407

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +       ML+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDALQTSGVYW 229


>gi|254498866|ref|ZP_05111573.1| putative type IV pilus, mannose-sensitive hemagglutinin protein
           [Legionella drancourtii LLAP12]
 gi|254351920|gb|EET10748.1| putative type IV pilus, mannose-sensitive hemagglutinin protein
           [Legionella drancourtii LLAP12]
          Length = 408

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 61/165 (36%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
           D+       +   +RAG+P++ A+  +   + +  +    ++++ T + G SL+ ++++ 
Sbjct: 67  DELHIFCRQMYSLIRAGIPIATAITRLGETTRNKTLADALQKIVITLNKGSSLNVAMAQF 126

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    S F   + +  +  GNL     +L++ L    ++  KV++           
Sbjct: 127 PNI-----FSTFFLNLVIIGENTGNLDNIFLHLAKYLELEVDITKKVKSALRYPIMVFAA 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           I      ++  V          +         + +A +  +I   
Sbjct: 182 IIIALLIINVFVIPAFAKLYASMHGILPLPTRILLAISNFIINYW 226


>gi|229524410|ref|ZP_04413815.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae bv. albensis
           VL426]
 gi|229337991|gb|EEO03008.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae bv. albensis
           VL426]
          Length = 408

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 49/148 (33%), Gaps = 6/148 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +  G+P+  A+ ++        ++S   ++ ++   G  LS+++   
Sbjct: 68  KDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTA 127

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +            +    ++ GNL E    L+      + ++AKV    +       +
Sbjct: 128 SAH-----FDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLV 182

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR 160
              + + + T+V             +  
Sbjct: 183 ALGVSYLMLTMVIPEFESMFKGFGAELP 210



 Score = 36.6 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/131 (9%), Positives = 36/131 (27%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +  S  AG+P+  ++      S +         V      G+ +  ++        
Sbjct: 277 FSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAAGMPMYIAMRN------ 330

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +        + +  +  G L + L  ++ I     +         +E     ++   + 
Sbjct: 331 TEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVG 390

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 391 GLVVAMYLPIF 401


>gi|254508850|ref|ZP_05120960.1| type IV pilin biogenesis protein PilC [Vibrio parahaemolyticus 16]
 gi|219548236|gb|EED25251.1| type IV pilin biogenesis protein PilC [Vibrio parahaemolyticus 16]
          Length = 408

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/171 (12%), Positives = 57/171 (33%), Gaps = 8/171 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +   I +R  +   D       +   +  G+P+  A+ ++        ++S   ++++  
Sbjct: 57  LYKRITQRVKR--KDITILTRQLATMLMTGVPLIQALKLVADNHRKAEMKSILSQIVKGV 114

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G  LS+++     +            +    +  GNL+E    ++      + +KAKV
Sbjct: 115 ESGTPLSKTLRTASTH-----FDTLYVDLVATGEQSGNLAEVFERIATYREKSEQLKAKV 169

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
               +          S+ + + T+V        +    D        +  +
Sbjct: 170 IKALIYPSMVVITALSVTYLMLTVVIPEFESMFSGFGADLPWFTAQVLILS 220



 Score = 34.3 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 13/131 (9%), Positives = 38/131 (29%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +  S  AG+P+   +      +++        +V      G+ +  ++        
Sbjct: 277 FSRTLATSFSAGIPILSCLKTSAKTANNIHYQNAIEQVYADTAAGMPIYIAMRN------ 330

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            Q        + +  +  G+L + L  ++ I     +         +E     ++   + 
Sbjct: 331 SQTFPEMVLQMVMIGEESGSLDDMLNKVATIYEFEIDNTVDNLGKVLEPMIIIFLGVVVG 390

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 391 GLVVAMYLPIF 401


>gi|315179152|gb|ADT86066.1| type IV pilin biogenesis protein PilC [Vibrio furnissii NCTC 11218]
          Length = 408

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 57/180 (31%), Gaps = 14/180 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           + H +K R      D       +   +  G+P+  A+ ++        ++S   +V +  
Sbjct: 61  LTHRVKTR------DITLLTRQLSTMLTTGVPIVQALKLVGDNHRKAEMKSILAQVTKGV 114

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G  +S+++                  +    +  GNL+E    L+      + ++AKV
Sbjct: 115 EAGTPMSKAMRTAS-----PHFDALYVDLIATGEQSGNLAEVFERLATYREKSEQLRAKV 169

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIM 177
               +       +   + + + T+V             +       +L ++       + 
Sbjct: 170 IKALIYPAMVMLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQILKLSHGVQAYSLW 229


>gi|313906429|ref|ZP_07839766.1| Type II secretion system F domain [Eubacterium cellulosolvens 6]
 gi|313468730|gb|EFR64095.1| Type II secretion system F domain [Eubacterium cellulosolvens 6]
          Length = 402

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 48/149 (32%), Gaps = 6/149 (4%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            I+    + +  +P  +  +     AGL +  A+  I          E  R       G+
Sbjct: 259 KIRAHREELIRRYPEIVSELQLYTAAGLSLRQAMKRIARNEP-----EAERCCYEMENGV 313

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQAL 122
              ++ +R        E    + +++      G  LSE L   ++   + +  +A+V   
Sbjct: 314 LEQDAYTRFGERCGTAEYRKLALLLAQSQMKGGARLSELLEEEAQGAFENRKRRARVLGE 373

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
               +    +   L   +  ++      +
Sbjct: 374 KAAVRMVLPMGMMLLIVLIIVMVPAFLTF 402


>gi|300950840|ref|ZP_07164725.1| general secretion pathway protein F [Escherichia coli MS 116-1]
 gi|300958337|ref|ZP_07170479.1| general secretion pathway protein F [Escherichia coli MS 175-1]
 gi|312972781|ref|ZP_07786954.1| general secretion pathway protein F [Escherichia coli 1827-70]
 gi|300314980|gb|EFJ64764.1| general secretion pathway protein F [Escherichia coli MS 175-1]
 gi|300449876|gb|EFK13496.1| general secretion pathway protein F [Escherichia coli MS 116-1]
 gi|309703396|emb|CBJ02735.1| type II secretion system protein F [Escherichia coli ETEC H10407]
 gi|310332723|gb|EFP99936.1| general secretion pathway protein F [Escherichia coli 1827-70]
 gi|323941940|gb|EGB38119.1| general secretion pathway protein F [Escherichia coli E482]
          Length = 407

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMV 178
             +   + T V        + L +        L+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPVSTRTLIAMSDALQASGVYW 229


>gi|255322157|ref|ZP_05363303.1| type II secretion system protein [Campylobacter showae RM3277]
 gi|255300530|gb|EET79801.1| type II secretion system protein [Campylobacter showae RM3277]
          Length = 415

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 63/160 (39%), Gaps = 9/160 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
           ++   A   +     AG+ + D++  +   + D  +++ F  + +  + G SL+++I++ 
Sbjct: 73  NNLIAAFRQLSVMTNAGISIHDSIKEVSKSTEDKRLKAIFATLNDDLNQGQSLTDAITKF 132

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                  E+      +    +  GN+SE+L  LS IL++    + K +           +
Sbjct: 133 -----KGELGDVVIAMVKLGESTGNMSESLHKLSDILQEVWENQRKFKKALRYPI---IV 184

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
           + ++      L+ F  P +  +         L  +    +
Sbjct: 185 MSAMAIAFIILMIFVVPQFREIFEQLGAKLPLPTIILLSI 224


>gi|320184379|gb|EFW59191.1| General secretion pathway protein F [Shigella flexneri CDC 796-83]
          Length = 407

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVMLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMV 178
             +   + T V        + L +        L+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPSSTRALIAMSDALQASGVYW 229


>gi|320174027|gb|EFW49197.1| General secretion pathway protein F [Shigella dysenteriae CDC
           74-1112]
          Length = 407

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVMLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMV 178
             +   + T V        + L +        L+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPSSTRALIAMSDALQASGVYW 229


>gi|300931842|ref|ZP_07147139.1| general secretion pathway protein F [Escherichia coli MS 187-1]
 gi|300460265|gb|EFK23758.1| general secretion pathway protein F [Escherichia coli MS 187-1]
          Length = 407

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +        L+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRALIAMSDALQASGVYW 229


>gi|212637455|ref|YP_002313980.1| type IV pilus biogenesis protein PilC [Shewanella piezotolerans
           WP3]
 gi|212558939|gb|ACJ31393.1| Type IV pilus biogenesis protein PilC [Shewanella piezotolerans
           WP3]
          Length = 421

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/172 (9%), Positives = 49/172 (28%), Gaps = 6/172 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   + AG+P+   + ++        +R     ++     G+ LSE++    
Sbjct: 80  DIAMVTRQVATMLAAGVPIVTTLELLGKGHEKPKMRELLATIVNDVQSGIPLSEALR--- 136

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G+L      ++      + +K+K++       +   + 
Sbjct: 137 --PHRLYFDELYVDLVAAGEHSGSLDAVFDRIATYREKSEALKSKIKKAMFYPASVVIVA 194

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             +   +   V             +      + V  +  L     + ++   
Sbjct: 195 VIVTALLLLFVVPQFETIFQGFGAELPAFTQIVVNLSRWLQSSWYIFVIAII 246


>gi|308047938|ref|YP_003911504.1| general secretion pathway protein F [Ferrimonas balearica DSM 9799]
 gi|307630128|gb|ADN74430.1| general secretion pathway protein F [Ferrimonas balearica DSM 9799]
          Length = 407

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 47/171 (27%), Gaps = 6/171 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                   +   V  GLP+ + +  +  QS  P        +        +         
Sbjct: 70  ALALITRQLSTLVAGGLPLEECIKAVAEQSEQPRLKSMLMAVR----AKVVEGYGLAESM 125

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
               Q        +    +  G+L   L  L+     R+ + AK+    +       +  
Sbjct: 126 AEYPQVFDELYVAMVASGEKSGHLEVVLERLADYTERRQELNAKLTQALVYPIILTVVAI 185

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183
           S+   + T V        + L          L+ ++      G+ ++  + 
Sbjct: 186 SVVVFLLTSVVPDVVSQFDHLGQALPATTQFLIDISDFLQHYGLYMLIAIA 236



 Score = 34.7 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 13/129 (10%), Positives = 35/129 (27%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     +G+P+ +A+ +      +                  + E  S        
Sbjct: 277 FARTLSTLSSSGVPMLEAMKIASDVLLNLKVK-----NAVSEATGKVREGASLRASLQQT 331

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +        +    +  G L + LA  +         +  V    ++      + G + F
Sbjct: 332 KLFPPMMLHMIASGEKSGELDDMLARAADNQDREFEAQVSVALAVLQPLIVVVMAGIVLF 391

Query: 139 CVSTLVYFT 147
            V +++   
Sbjct: 392 IVISILQPM 400


>gi|255021306|ref|ZP_05293354.1| Type IV fimbrial assembly protein PilC [Acidithiobacillus caldus
           ATCC 51756]
 gi|254969169|gb|EET26683.1| Type IV fimbrial assembly protein PilC [Acidithiobacillus caldus
           ATCC 51756]
          Length = 418

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/174 (11%), Positives = 56/174 (32%), Gaps = 6/174 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
                  +  +   + AG+P+  +  ++    S   ++   + +++  + G SLS+S++ 
Sbjct: 74  EAQIVVMVRQLSTMINAGVPLVQSFELLISATSQPGMKKLLKGILKHLNEGESLSQSLAH 133

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             R             +    + GG L   L  L+        +  KV++      A   
Sbjct: 134 YPR-----YFDRLFVSLVQAGEQGGILDTILLRLADYREKSLALSKKVKSAMFYPAAIIS 188

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           ++  +   +   V                    + +  +  + G   + +++  
Sbjct: 189 VMIVVVVILMIFVIPVFSNLFKSFGATLPLLTQMVINLSDWMKGHWYIVVLLPI 242


>gi|269966287|ref|ZP_06180375.1| type IV pilin biogenesis protein PilC [Vibrio alginolyticus 40B]
 gi|269829084|gb|EEZ83330.1| type IV pilin biogenesis protein PilC [Vibrio alginolyticus 40B]
          Length = 407

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 50/161 (31%), Gaps = 12/161 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           + H +K R      D       I   +  G+P+  A+ ++        ++S    V    
Sbjct: 60  LSHRVKGR------DITVFTRQISTMLITGVPLVQALKLVSENHKKAEMKSILMSVTRAV 113

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G  +S+++     +            +    +  GNL+E    L+      + ++AKV
Sbjct: 114 EAGTPMSKAMRTASEHFDPLYTD-----LIATGEQSGNLAEVFERLATYREKNEQLRAKV 168

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
               +       +   + F + T V             D  
Sbjct: 169 IKALIYPAMVVLVALGVSFIMLTKVIPEFEKMFVGFGADLP 209



 Score = 34.7 bits (78), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/136 (9%), Positives = 37/136 (27%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72
                    +  S  AG+P+  ++      S +         V      G+ +  ++   
Sbjct: 271 AAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNLHYQLAIEEVYRDTAAGMPMYVAMRN- 329

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          + +  +  G L + L  ++ I     +      +  +E     ++
Sbjct: 330 -----CNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFL 384

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V+ +     
Sbjct: 385 GIVVGGLVTAMYLPIF 400


>gi|167550661|ref|ZP_02344418.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205324362|gb|EDZ12201.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 400

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q          R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P          +    +L G L+E    L+R  + ++ +   V+           
Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPA---I 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183
           I+      V  +++F  P +  +  +      LL      +   G     L++
Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGWLIL 221


>gi|262166465|ref|ZP_06034202.1| type 4 fimbrial assembly protein PilC [Vibrio mimicus VM223]
 gi|262026181|gb|EEY44849.1| type 4 fimbrial assembly protein PilC [Vibrio mimicus VM223]
          Length = 408

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 48/148 (32%), Gaps = 6/148 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +  G+P+  A+ ++        ++S   ++ +    G  LS+++   
Sbjct: 68  KDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKGVEAGTPLSKAMRTA 127

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +            +    ++ GNL E    L+      + ++AKV    +       +
Sbjct: 128 SAH-----FDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLV 182

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR 160
              + + + T+V             +  
Sbjct: 183 ALGVSYLMLTMVIPEFESMFKGFGAELP 210



 Score = 36.6 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/131 (9%), Positives = 36/131 (27%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +  S  AG+P+  ++      S +         V      G+ +  ++        
Sbjct: 277 FSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAAGMPMYIAMRN------ 330

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +        + +  +  G L + L  ++ I     +         +E     ++   + 
Sbjct: 331 TEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVG 390

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 391 GLVVAMYLPIF 401


>gi|332799372|ref|YP_004460871.1| Type II secretion system F domain-containing protein
           [Tepidanaerobacter sp. Re1]
 gi|332697107|gb|AEE91564.1| Type II secretion system F domain protein [Tepidanaerobacter sp.
           Re1]
          Length = 402

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 53/161 (32%), Gaps = 6/161 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   + AG+ + +++  I  Q+ +  +R     +      G SL+E+     
Sbjct: 66  DLSVFCRQLAVMLDAGVNILESLTSIAKQTENKRLREIIFNLNLHIRRGDSLAEACKNQP 125

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +    +L GNLS+ L  LS    D      K+++  +     + I 
Sbjct: 126 -----YVFSEIFICLIEAGELSGNLSDILKMLSAYYSDMAKQNEKIKSSMVYPSILSIIS 180

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
             +   ++T V        +           + +     +I
Sbjct: 181 LFVVVFLTTKVLPVYANIFSSAGVQLPKITQIFLLLGSNMI 221



 Score = 35.1 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 37/140 (26%), Gaps = 9/140 (6%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
                      L I+     +G+P+  A+ V      + V       +            
Sbjct: 266 KKSISSQIAKLLFILSS---SGIPMLKALEVSCNTVKNRVIKMELIKVHEGLKQG----- 317

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
              +   M  +  S     I    +  G L E L   +    +   +      L +E   
Sbjct: 318 -KNLSELMSEKIFSPIMVEIIAIGEESGALEEMLDKAASFNENEAKILEDRLILFIEPVI 376

Query: 129 SAWIIGSLPFCVSTLVYFTS 148
              +   + F V ++V    
Sbjct: 377 IIVLTLIISFIVISVVIPMF 396


>gi|269961299|ref|ZP_06175665.1| MSHA biogenesis protein MshG [Vibrio harveyi 1DA3]
 gi|269833965|gb|EEZ88058.1| MSHA biogenesis protein MshG [Vibrio harveyi 1DA3]
          Length = 407

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 47/160 (29%), Gaps = 6/160 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +    +AG+P+  ++  ++    +    E    V+     G  LS +         
Sbjct: 71  FSRQLFSLTKAGVPLLRSMRGLLQNCENKQLKEALEDVVAELSNGRGLSSA-----MQPH 125

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +  S     +    +  G L +AL  L+         + +++A           I    
Sbjct: 126 TKVFSPLFVSMINVGENTGRLDQALLQLANYYEQELETRKRIKAAMRYPTFVIVFITIAM 185

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           F ++ LV             +      + +A +   +   
Sbjct: 186 FILNILVIPEFASMFMRFGVELPLPTRILIATSNFFVNYW 225



 Score = 37.4 bits (85), Expect = 0.99,   Method: Composition-based stats.
 Identities = 11/135 (8%), Positives = 37/135 (27%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         +++G+P++ ++A+      +              +  ++    +  
Sbjct: 268 RAQLSRFSRTFSLMLKSGVPLNQSLALAGEALGNKFLE-----NRILEMKAAIEAGSTIS 322

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           V  +  +  +     +    +  G + E L  +S       +   K     +E      +
Sbjct: 323 VTAINSKIFTPLVIQMIAVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPLLLVIV 382

Query: 133 IGSLPFCVSTLVYFT 147
            G +      +    
Sbjct: 383 AGMVMVLALGIFLPM 397


>gi|198245628|ref|YP_002214095.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|207855657|ref|YP_002242308.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|197940144|gb|ACH77477.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|206707460|emb|CAR31734.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|326621838|gb|EGE28183.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 400

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q          R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P          +    +L G L+E    L+R  + ++ +   V+           
Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPA---I 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183
           I+      V  +++F  P +  +  +      LL      +   G     L++
Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGWLIL 221


>gi|196229421|ref|ZP_03128286.1| type II secretion system protein [Chthoniobacter flavus Ellin428]
 gi|196226653|gb|EDY21158.1| type II secretion system protein [Chthoniobacter flavus Ellin428]
          Length = 438

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 49/153 (32%), Gaps = 9/153 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISR 71
                     +   + AGLP+   + V+  Q     +      + +    G + SES+++
Sbjct: 85  SKTLMIFTRQLATLIDAGLPLLRGLTVLAKQERDPVLAKTINNLADAVQSGSTFSESMAQ 144

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                     +     +    +LGG L   L  L+      + +K KV +          
Sbjct: 145 HPLI-----FNKLYINMVKAGELGGVLELVLNRLAEFQEKAQKVKNKVVSAMAYPVIVLI 199

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
           I       +  L+ F  P +  +  +   G  L
Sbjct: 200 IAIL---IMVFLMAFIVPKFEQIFHDMLGGKPL 229



 Score = 37.4 bits (85), Expect = 0.84,   Method: Composition-based stats.
 Identities = 16/154 (10%), Positives = 40/154 (25%), Gaps = 10/154 (6%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R +            +   V +G+P+  A+ +    + + V +     +           
Sbjct: 294 RKSSISR----FSRTLGTLVTSGVPILQALNITRDTAGNTVIANAVTKVHDAVKEGESIV 349

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
                    P          +    +  G L E L  ++ +  D  +   +     +E  
Sbjct: 350 QPLEASGVFPP-----MVISMVDVGEETGQLPEMLLKIAEVYDDEVDNAVEGLTSLLEPI 404

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
              ++   +   V  L        +  +     G
Sbjct: 405 MIVFLALIVGTIVIALFMPLI-EIIKQMGGQNAG 437


>gi|307151679|ref|YP_003887063.1| type II secretion system F domain-containing protein [Cyanothece
           sp. PCC 7822]
 gi|306981907|gb|ADN13788.1| Type II secretion system F domain protein [Cyanothece sp. PCC 7822]
          Length = 404

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 56/163 (34%), Gaps = 8/163 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                   + AG+ +   + V+  Q  +  ++     +      G  LSE++++      
Sbjct: 69  FSRQFSVMINAGVAIVRCLGVLSDQCGNKKLKKALAGISSEVQQGSPLSEAMAKYPDC-- 126

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    + GG L E LA L+++L D   +K ++++      A   +   + 
Sbjct: 127 ---FDQLYVSMVEAGETGGVLDEVLARLAKLLEDMARLKNQIKSAMAYPVAVGILAVIVF 183

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHM--LLGVAAAFMLIGIMV 178
           F ++  +          L  +       +L ++       I +
Sbjct: 184 FAMTVFLIPVFAKIFLDLKVELPALTKFMLFLSGVMRSWKIFI 226



 Score = 39.3 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/134 (8%), Positives = 41/134 (30%), Gaps = 7/134 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
              +     R+G+P+  ++ ++     +  + +     +     G  +S ++ +      
Sbjct: 273 FCRVFGTLTRSGVPILSSLEIVCNTVGNQVIANAIAGAVSEIQQGGMMSIALQKA----- 327

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +  +    +  G L   +  ++    D      K     +E     +I G + 
Sbjct: 328 -NVFPALAIQMISIGEETGELDAMMMKVADFYEDEVEQAVKALTSVIEPLMMVFIAGMVG 386

Query: 138 FCVSTLVYFTSPGY 151
             + ++       +
Sbjct: 387 TILLSMYLPMFAVF 400


>gi|194444325|ref|YP_002039374.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194402988|gb|ACF63210.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 400

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q          R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P          +    +L G L+E    L+R  + ++ +   V+           
Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPA---I 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183
           I+      V  +++F  P +  +  +      LL      +   G     L++
Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGAAWGWLIL 221


>gi|153003541|ref|YP_001377866.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5]
 gi|152027114|gb|ABS24882.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5]
          Length = 419

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 45/140 (32%), Gaps = 6/140 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                   + AGLP+  A+ ++  QS +P  +     V      G + ++++    +   
Sbjct: 85  FTRQFSVMIDAGLPLVQALDILATQSDNPAFKKVLTAVKVRVESGSTFADALGEHPKA-- 142

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    ++GG L   L  L   +   + +K +V++  +       +   + 
Sbjct: 143 ---FDDLFVQLVRAGEIGGILDTILQRLGAYIEKNEKLKRRVKSAMVYPSIVLTVGVGVT 199

Query: 138 FCVSTLVYFTSPGYMNVLIN 157
             +   V  T          
Sbjct: 200 VVLLAFVTPTFEKMFKDFGG 219



 Score = 41.6 bits (96), Expect = 0.056,   Method: Composition-based stats.
 Identities = 10/130 (7%), Positives = 38/130 (29%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+P+ DA+ ++   + + +  +    +  +              +  P 
Sbjct: 288 FTRTLGTMLSSGVPILDALQIVARSAGNKIIEKGVMYVRAKISEGKTIAGPLAETQVFPP 347

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G +   L  ++    D  ++        +E     ++ G +  
Sbjct: 348 -----MVVQMIGVGEATGAMDAMLNKIADFYDDEVDVAVAGLTAMIEPVMMVFLGGMVGG 402

Query: 139 CVSTLVYFTS 148
            +  +     
Sbjct: 403 FLVAMYLPIF 412


>gi|15598298|ref|NP_251792.1| general secretion pathway protein F [Pseudomonas aeruginosa PAO1]
 gi|107102651|ref|ZP_01366569.1| hypothetical protein PaerPA_01003716 [Pseudomonas aeruginosa PACS2]
 gi|116051098|ref|YP_790071.1| general secretion pathway protein F [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218890698|ref|YP_002439562.1| general secretion pathway protein F [Pseudomonas aeruginosa LESB58]
 gi|254236072|ref|ZP_04929395.1| general secretion pathway protein F [Pseudomonas aeruginosa C3719]
 gi|254241799|ref|ZP_04935121.1| general secretion pathway protein F [Pseudomonas aeruginosa 2192]
 gi|296388399|ref|ZP_06877874.1| general secretion pathway protein F [Pseudomonas aeruginosa PAb1]
 gi|313108412|ref|ZP_07794428.1| general secretion pathway protein F [Pseudomonas aeruginosa 39016]
 gi|139790|sp|Q00513|GSPF_PSEAE RecName: Full=General secretion pathway protein F
 gi|9949212|gb|AAG06490.1|AE004734_8 general secretion pathway protein F [Pseudomonas aeruginosa PAO1]
 gi|45435|emb|CAA44534.1| secretion protein XcpS [Pseudomonas aeruginosa PAO1]
 gi|115586319|gb|ABJ12334.1| general secretion pathway protein F [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126168003|gb|EAZ53514.1| general secretion pathway protein F [Pseudomonas aeruginosa C3719]
 gi|126195177|gb|EAZ59240.1| general secretion pathway protein F [Pseudomonas aeruginosa 2192]
 gi|218770921|emb|CAW26686.1| general secretion pathway protein F [Pseudomonas aeruginosa LESB58]
 gi|310880930|gb|EFQ39524.1| general secretion pathway protein F [Pseudomonas aeruginosa 39016]
          Length = 405

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 53/158 (33%), Gaps = 9/158 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   V+A LP+ +A+       +S  ++S    V      G SL+ S+   
Sbjct: 66  RDLALVTRQLATLVQAALPIEEALRAAAAQSTSQRIQSMLLAVRAKVLEGHSLAGSLREF 125

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P               +  G+L   L  L+     R+  + K+Q   +       +
Sbjct: 126 PTAFP-----ELYRATVAAGEHAGHLGPVLEQLADYTEQRQQSRQKIQLALLYPV---IL 177

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           + +    V  L+ +  P  + V I+  +   LL     
Sbjct: 178 MVASLAIVGFLLGYVVPDVVRVFIDSGQTLPLLTRVLI 215



 Score = 40.5 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 47/130 (36%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +    R+G+P+ +A+A+     ++ +   E  +  +    G SL+ S+    ++ P
Sbjct: 274 FASTLAILTRSGVPLVEALAIAAEVIANRIIRNEVVKAAQKVREGASLTRSLEATGQFPP 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         +    +  G L + LA  +R   +    +  +     E     ++   + 
Sbjct: 334 M------MLHMIASGERSGELDQMLARTARNQENDLAAQIGLMVGLFEPFMLIFMGAVVL 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 VIVLAILLPI 397


>gi|160936832|ref|ZP_02084197.1| hypothetical protein CLOBOL_01721 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440213|gb|EDP17959.1| hypothetical protein CLOBOL_01721 [Clostridium bolteae ATCC
           BAA-613]
          Length = 403

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/171 (12%), Positives = 49/171 (28%), Gaps = 4/171 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
               P     +   + AG+P+S A+ V  G + D         +                
Sbjct: 65  QRQLPLLCRQLAAMLTAGVPLSRALEVSAGSARDKTLKVTLAGLRESIHKGR----TLSE 120

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          ++   +  G L E L  ++      + +  KV+A          I
Sbjct: 121 AMEEMKGVFPNLLVYMTRTGESSGRLDELLHKMAGYYGREEELNGKVRAAMTYPVILFSI 180

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
                  + T V       +          M++ ++ +    G++ + L++
Sbjct: 181 TVLAAVFMLTTVLPQFASMLQEQELPWITRMMMRLSFSLRSRGVLYIMLIL 231


>gi|16763532|ref|NP_459147.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167990016|ref|ZP_02571116.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168243442|ref|ZP_02668374.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194450042|ref|YP_002044112.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|16418642|gb|AAL19106.1| putative component in type IV pilin biogenesis [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|194408346|gb|ACF68565.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205331469|gb|EDZ18233.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205337541|gb|EDZ24305.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|261245375|emb|CBG23164.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267991821|gb|ACY86706.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301156770|emb|CBW16245.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312911112|dbj|BAJ35086.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321222282|gb|EFX47354.1| Type IV fimbrial assembly protein PilC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323128462|gb|ADX15892.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332987095|gb|AEF06078.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 400

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q          R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P          +    +L G L+E    L+R  + ++ +   V+           
Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPA---I 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183
           I+      V  +++F  P +  +  +      LL      +   G     L++
Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGWLIL 221


>gi|117918611|ref|YP_867803.1| general secretion pathway protein F [Shewanella sp. ANA-3]
 gi|117610943|gb|ABK46397.1| general secretion pathway protein F [Shewanella sp. ANA-3]
          Length = 407

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 57/172 (33%), Gaps = 8/172 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            +       I   V AGLP+ + +  +  Q     + S    V      G SL++S++  
Sbjct: 67  AELALITRQIATLVAAGLPIEECLKAVGQQCEKARLASMIMAVRSRVVEGYSLADSLAEF 126

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G+L   L  L+     R+ +K+K+Q   +       +
Sbjct: 127 P-----HIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKLQQAMIYPIMLTIV 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML--IGIMVMRLM 182
              +   +   V     G    +  +        +AA+  +   G+ V+  +
Sbjct: 182 AIGVVSVLLAAVVPKVVGQFEHMGAELPATTRFLIAASDFVQHYGLFVILAI 233


>gi|86360589|ref|YP_472477.1| putative tadC pilus assembly protein [Rhizobium etli CFN 42]
 gi|86284691|gb|ABC93750.1| putative tadC pilus assembly protein [Rhizobium etli CFN 42]
          Length = 314

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 70/165 (42%), Gaps = 4/165 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS---EFRRVIE 57
           +      +  ++   FP+ +D+++  + AG+ +  A   +  +  D  +        ++ 
Sbjct: 149 IDRRGAAKEREYRRLFPDFMDMLIVCLDAGMSIEAAANRVAREFVDKQQDFGLHLSIMML 208

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G  L E+++ +   + + E    S +     +LG ++++ L   S  +RD + ++A
Sbjct: 209 EVRGGRRLREALANLATRLRIDEARALSVLFRQSEELGTSVTQTLRVYSNEMRDLRVVRA 268

Query: 118 KVQALSMEAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRG 161
           + +A ++  K    +   L P  +  ++       +++L+    G
Sbjct: 269 EEKANALPVKMLLPLGAFLFPVSLLIVLVPIIMRVVSLLVGMKPG 313


>gi|152986066|ref|YP_001347407.1| general secretion pathway protein F [Pseudomonas aeruginosa PA7]
 gi|150961224|gb|ABR83249.1| general secretion pathway protein F [Pseudomonas aeruginosa PA7]
          Length = 405

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 53/158 (33%), Gaps = 9/158 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   V+A LP+ +A+       +S  ++S    V      G SL+ S+   
Sbjct: 66  RDLALVTRQLATLVQAALPIEEALRAAAAQSTSQRIQSMLLAVRAKVLEGHSLAGSLREF 125

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P               +  G+L   L  L+     R+  + K+Q   +       +
Sbjct: 126 PSAFP-----ELYRATVAAGEHAGHLGPVLEQLADYTEQRQQSRQKIQLALLYPV---IL 177

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           + +    V  L+ +  P  + V I+  +   LL     
Sbjct: 178 MVASLAIVGFLLGYVVPDVVRVFIDSGQTLPLLTRVLI 215



 Score = 40.5 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 47/130 (36%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +    R+G+P+ +A+A+     ++ +   E  +  +    G SL+ S+    ++ P
Sbjct: 274 FASTLAILTRSGVPLVEALAIAAEVIANRIIRNEVVKAAQKVREGASLTRSLEATGQFPP 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         +    +  G L + LA  +R   +    +  +     E     ++   + 
Sbjct: 334 M------MLHMIASGERSGELDQMLARTARNQENDLAAQIGLMVGLFEPFMLIFMGAVVL 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 VIVLAILLPI 397


>gi|84393982|ref|ZP_00992721.1| type IV pilin biogenesis protein PilC [Vibrio splendidus 12B01]
 gi|84375376|gb|EAP92284.1| type IV pilin biogenesis protein PilC [Vibrio splendidus 12B01]
          Length = 409

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 52/148 (35%), Gaps = 6/148 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +  G+P+  A+ ++        ++S    + +    G  +S+++   
Sbjct: 69  KDITILTRQLATMLATGVPIVQAIKLVSDNHRKAEMKSILSHICKGVEAGTPISKAMRTA 128

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R+          T +    +L GNL++    L+      + +K+KV    +       +
Sbjct: 129 SRH-----FDDLYTDLVATGELSGNLAQVFERLATYREKSEQLKSKVIKALIYPAMVVAV 183

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR 160
             ++ + + T+V        +    D  
Sbjct: 184 ALTVSYLMLTMVIPEFESMFSGFGADLP 211



 Score = 35.5 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/131 (9%), Positives = 36/131 (27%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +  S  +G+P+  ++      + +         V      G+ +  ++        
Sbjct: 278 FSRTLSTSFSSGIPILTSLKTTAKTAGNLHYESAIIEVHRETAAGMPMYIAMRN------ 331

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     + +  +  GNL + L  ++ I     +         +E     ++   + 
Sbjct: 332 TNAFPEMVLQMVMIGEESGNLDDMLNKVASIYEFEVDNTVDNLGKILEPLIIVFLGTVVG 391

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 392 GLVVAMYLPIF 402


>gi|281180001|dbj|BAI56331.1| putative type II secretion protein [Escherichia coli SE15]
          Length = 407

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +       ML+ ++      G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDTLQASGVYW 229


>gi|255514158|gb|EET90420.1| type II secretion system protein [Candidatus Micrarchaeum
           acidiphilum ARMAN-2]
          Length = 365

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 67/171 (39%), Gaps = 2/171 (1%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
            K   D   A   ++ S+R+G+P+ +A+  I          EF +++E   LG+ L E+I
Sbjct: 186 KKVERDILFAARDMIISLRSGMPLFNAIVSIS-TGYADASKEFAKIVERVQLGMPLEEAI 244

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            + +               SV  + G ++  AL  +   L   + ++ +     + A A 
Sbjct: 245 DQTIADTKSDSFRRIMLQASVSIKAGADIVSALQTVIDQLSQERYIELRRYGQRLNAIAM 304

Query: 130 AWIIGSLPFC-VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            +++  +    +   V      ++ +    P     + V   F+ +  ++M
Sbjct: 305 FYMLFGVILPSMGIAVVTILTTFIALFTVTPILLYAVLVGIGFLQVVFLIM 355


>gi|296133255|ref|YP_003640502.1| Type II secretion system F domain protein [Thermincola sp. JR]
 gi|296031833|gb|ADG82601.1| Type II secretion system F domain protein [Thermincola potens JR]
          Length = 404

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 58/169 (34%), Gaps = 6/169 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISR 71
           + D           + AG+PV   + ++  Q ++P+  E    V+     G +LS++++ 
Sbjct: 64  MKDLALFCRQFSTMLNAGIPVMHGLGILTRQMANPLLREATEEVVRDLERGRTLSDAMAM 123

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P          +    +LGG L +    L+   +    +++KV +  +       
Sbjct: 124 HPKVFP-----ALMVNMVEAGELGGILDQVFERLAAYYQREYELRSKVISALIYPAVVCL 178

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           +   +   +   V     G              + +A +  +   ++  
Sbjct: 179 VAMLVVGILIVFVLPKFAGLFADYGAILPLPTRMLMAISNSVQNYLLFW 227



 Score = 35.5 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 12/130 (9%), Positives = 37/130 (28%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+PV  A+ ++     +    +           ++L E  S        
Sbjct: 273 FARTLSSLLASGVPVLQAMEMVKKLMDNHYLKQGIA-----GAQVALREGKSMWEPLQHA 327

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +        +    +  G + + L  ++ +               +E      +   + F
Sbjct: 328 RVFDPMVPQMIAVGEETGAVDKMLEKIANVYDGEVEQTVNRLTSLIEPVIILVLALVVGF 387

Query: 139 CVSTLVYFTS 148
            V +++    
Sbjct: 388 IVISVMLPMF 397


>gi|313793203|gb|EFS41270.1| type II secretion system F domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313802708|gb|EFS43926.1| type II secretion system F domain protein [Propionibacterium acnes
           HL110PA2]
 gi|314964615|gb|EFT08715.1| type II secretion system F domain protein [Propionibacterium acnes
           HL082PA1]
 gi|315078730|gb|EFT50756.1| type II secretion system F domain protein [Propionibacterium acnes
           HL053PA2]
 gi|327457152|gb|EGF03807.1| type II secretion system F domain protein [Propionibacterium acnes
           HL092PA1]
          Length = 249

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 7   KRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +R  +      P AL ++  ++ AGLP+  AV  +      P   + RR+  +   G+  
Sbjct: 101 RRMEQHRAAQLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVPD 160

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S + + +     ++     +  +S     G  +SE L+  +  L+     K + +A    
Sbjct: 161 SRAWNDLA---SVEVWRDPAQDVSRAVDSGEGISELLSAHAAQLQVAAAEKTEKKARKAG 217

Query: 126 AK-ASAWIIGSLPFCVSTLVYFTSPGYM 152
                  +   LP  +   V     G +
Sbjct: 218 VDAIGPLVCCHLPAFLLVGVVPIIAGMV 245


>gi|294496203|ref|YP_003542696.1| type II secretion system F domain protein [Methanohalophilus mahii
           DSM 5219]
 gi|292667202|gb|ADE37051.1| Type II secretion system F domain protein [Methanohalophilus mahii
           DSM 5219]
          Length = 641

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 56/162 (34%), Gaps = 1/162 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           + ++  +K   + P  L  +     AG+ +S A+ ++       +  E +++      G 
Sbjct: 422 IKRRWVSKVESEMPEFLKKLASINEAGIRLSSAITLVSRSKIGVLNIEIKKMASHLSWGG 481

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QAL 122
           +L E + +    +  +  S   T I   S+   ++   L   +     +  +K +    +
Sbjct: 482 NLEEVLKKFEYRVRTEFNSRIITFIIKASESTSDVISVLNIAASEAEMQSQLKRERSAEM 541

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
           ++             F V  L  +  P   +   +   G  L
Sbjct: 542 TVYVFIVYVAFLVFLFIVYVLAAYFLPAVPSSAADAVAGMPL 583


>gi|262170629|ref|ZP_06038307.1| type 4 fimbrial assembly protein PilC [Vibrio mimicus MB-451]
 gi|261891705|gb|EEY37691.1| type 4 fimbrial assembly protein PilC [Vibrio mimicus MB-451]
          Length = 408

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/184 (12%), Positives = 58/184 (31%), Gaps = 21/184 (11%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +  G+P+  A+ ++        ++S   ++ +    G  LS+++   
Sbjct: 68  KDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKGVEAGTPLSKAMRTA 127

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +            +    ++ GNL E    L+      + ++AKV    +       +
Sbjct: 128 STH-----FDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLV 182

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRG---------------HMLLGVAAAFMLIGIM 177
              + + + T+V             +                   +   VA   M++G+ 
Sbjct: 183 ALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFVAIVAMVLGLK 242

Query: 178 VMRL 181
            +R 
Sbjct: 243 ALRK 246



 Score = 36.3 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/131 (9%), Positives = 36/131 (27%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +  S  AG+P+  ++      S +         V      G+ +  ++        
Sbjct: 277 FSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAAGMPMYIAMRN------ 330

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +        + +  +  G L + L  ++ I     +         +E     ++   + 
Sbjct: 331 TEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVG 390

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 391 GLVVAMYLPIF 401


>gi|195952902|ref|YP_002121192.1| type II secretion system protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195932514|gb|ACG57214.1| type II secretion system protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 402

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/159 (9%), Positives = 37/159 (23%), Gaps = 4/159 (2%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
                 +    L  +   ++ G+ V  A+ +   Q  +    E    +            
Sbjct: 56  KKVKEKELSLVLRQVGFLIQVGISVPQALEMAAKQIDNKYFQETLLEVAKDVS----EGV 111

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                              + +  +  G L  +L   S        +K K+++ S     
Sbjct: 112 TVGQAMQKKKNVFPPLLISLVMTGEETGQLDRSLILASEYYEKLAKIKGKIKSASFYPSF 171

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
              I   +   +   +                   L+ +
Sbjct: 172 VLIIATIITTGIIYFLVPIFASIYKGFGASLPLPTLMLL 210


>gi|74310725|ref|YP_309144.1| type IV pilin biogenesis protein [Shigella sonnei Ss046]
 gi|73854202|gb|AAZ86909.1| putative integral membrane protein [Shigella sonnei Ss046]
 gi|323165987|gb|EFZ51767.1| bacterial type II secretion system F domain protein [Shigella
           sonnei 53G]
          Length = 400

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/182 (11%), Positives = 54/182 (29%), Gaps = 22/182 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +     +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLM 235

Query: 180 RL 181
           R 
Sbjct: 236 RR 237


>gi|293412337|ref|ZP_06655060.1| general secretion pathway protein F [Escherichia coli B354]
 gi|291469108|gb|EFF11599.1| general secretion pathway protein F [Escherichia coli B354]
          Length = 407

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +       ML+ ++      G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDTLQTSGVYW 229


>gi|229512662|ref|ZP_04402131.1| MSHA biogenesis protein MshG [Vibrio cholerae TMA 21]
 gi|229350339|gb|EEO15290.1| MSHA biogenesis protein MshG [Vibrio cholerae TMA 21]
          Length = 408

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/165 (9%), Positives = 43/165 (26%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72
           +        +    +AG+P+  ++  +     +         V      G +LS      
Sbjct: 67  EVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS-----A 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +     S     +    +  G L +AL  L+         + +++            
Sbjct: 122 SMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITF 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +    F ++  V        +    D      + +  +   +   
Sbjct: 182 VLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYW 226



 Score = 41.3 bits (95), Expect = 0.062,   Method: Composition-based stats.
 Identities = 10/135 (7%), Positives = 35/135 (25%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         + AG+P++ ++A+      +    +         +   +   ++  
Sbjct: 269 RAQLSRFARTFSLMLSAGVPLNQSLALSAEAIDNKFLEQRIL-----EMKSQIESGVAVS 323

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +     +     +    +  G + E L  +S       +   K     +E     ++
Sbjct: 324 ATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLVFV 383

Query: 133 IGSLPFCVSTLVYFT 147
              +      +    
Sbjct: 384 AAMVLVLALGIFLPM 398


>gi|88799609|ref|ZP_01115185.1| Type II secretory pathway, component PulF [Reinekea sp. MED297]
 gi|88777694|gb|EAR08893.1| Type II secretory pathway, component PulF [Reinekea sp. MED297]
          Length = 410

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 55/175 (31%), Gaps = 6/175 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLG 62
            I  R    +DD       +    R+G+P+  A+  +   + S  +    R V  +   G
Sbjct: 61  RIFARKRVNIDDLIMFSRQMYALTRSGIPLIRAINGLADATRSPVLSEVLREVTRSLTQG 120

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            +L+ S     R             +    +  G L  A   L   L   K+ + K+ + 
Sbjct: 121 TNLANSFRAHPRVFG-----DLFVAMVRMGESTGRLDSAFKQLIDHLELEKDTRKKIASA 175

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +         I    F V+  V        + L  D     ++ +  +  ++   
Sbjct: 176 TRYPIIVTVFIFVALFVVNLWVVPEFSNIFSKLGADLPLPTVILITTSNFMLRFW 230



 Score = 34.3 bits (77), Expect = 7.0,   Method: Composition-based stats.
 Identities = 14/133 (10%), Positives = 37/133 (27%), Gaps = 5/133 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                       + AG+P+  A+ V      +    +        ++   +    S +  
Sbjct: 275 ALGRFARPFAMMLDAGVPLLQALTVSSRTVGNAYIGKGIE-----NMLHGIERGESLLST 329

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                  +     +    +  GN+S+ L +++           K  A S+E     ++  
Sbjct: 330 ASASGMFNPLILQMIAVGEETGNVSDLLVDIADFYDQEVEYDLKRLAESLEPILLIFMGL 389

Query: 135 SLPFCVSTLVYFT 147
            +      +    
Sbjct: 390 MVLVLALGVFLPM 402


>gi|332143349|ref|YP_004429087.1| general secretion pathway protein F [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327553371|gb|AEB00090.1| general secretion pathway protein F [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 408

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 54/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V + LPV +A+  +  Q      ++    V      G  L++++ +  
Sbjct: 69  DLALLTRQMATLVESALPVEEALLAVAEQCEKPRQKNMMMAVRSKVVEGHGLADALGQFP 128

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G+L   L  L+     R+  ++++    +      +  
Sbjct: 129 -----SVFDELYRAMVAAGEKSGHLDTVLNRLADYTERRQQTRSQITQAMIYPSLMLFFA 183

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA--FMLIGIMV 178
             +   + T+V     G  + +  D  G     ++ +      G+ +
Sbjct: 184 MGIVLLLLTVVVPKIVGQFDHMGQDLPGITQFLISVSTWLQNYGLFM 230


>gi|239934068|ref|ZP_04691021.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
          Length = 319

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 63/174 (36%), Gaps = 3/174 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +        +   +R G+ +  A+      + D +  +   + +   LG    E++    
Sbjct: 108 EALSEWTQRLAGLLRLGMGLEQAMITSRKGAPDALAEQITGLSDRLRLGWRPEEALRAFA 167

Query: 74  RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +        +  + +     G  L++AL +L+  +R+    K  ++A   + + +   
Sbjct: 168 DELDDVTADKVTAALILSVNDRGPGLAQALEDLAGTVREEVAKKRGIEADRAKPRTTVRW 227

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           +  +   V     F  P Y     +   G ++LG   A  +  + +MR +  F 
Sbjct: 228 MTFITVGVVVA-GFFVPSYTAP-YSTLLGQLVLGFLTAGFVATLALMRQLGAFR 279


>gi|168820862|ref|ZP_02832862.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205342429|gb|EDZ29193.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320084388|emb|CBY94181.1| General secretion pathway protein F Cholera toxin secretion protein
           epsF [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 400

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q          R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAQQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P          +    +L G L++    L+R  + ++ +   V+           
Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLADCCFELARQQKAQRQITVSVKKALRYPA---I 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183
           I+      V  +++F  P +  +  +      LL      +   G     L++
Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGWLIL 221


>gi|323978965|gb|EGB74045.1| general secretion pathway protein F [Escherichia coli TW10509]
          Length = 407

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +        L+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRALIAMSDALQTSGVYW 229


>gi|298345274|ref|YP_003717961.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063]
 gi|298235335|gb|ADI66467.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063]
          Length = 303

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 52/146 (35%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R      + P+ ++++  +V AG P+  A+  +  + +D    E  +++    
Sbjct: 150 LTGAARRRQLSLNQELPDVIELLALAVGAGEPLYGALHRVSARCTDVAGQELEKILAAAD 209

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ S++        + ++     I    + G  L+  L +     R     +   +
Sbjct: 210 NGDSLAPSLTAARARNDSEILAHLIDAIVSALERGSPLAGVLRSQVADSRAVARTQLLTE 269

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146
               E      ++  +         +
Sbjct: 270 GGKKEVLMMVPVVFLILPLTVVFALY 295


>gi|153833992|ref|ZP_01986659.1| msha biogenesis protein mshg [Vibrio harveyi HY01]
 gi|148869636|gb|EDL68622.1| msha biogenesis protein mshg [Vibrio harveyi HY01]
          Length = 407

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 48/160 (30%), Gaps = 6/160 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +    +AG+P+  ++  ++    +    E    V+     G  LS +         
Sbjct: 71  FSRQLFSLTKAGVPLLRSMRGLLQNCENKQLKEALEEVVAELSNGRGLSSA-----MQPH 125

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +  S     +   ++  G L +AL  L+         + +++A           I    
Sbjct: 126 TKVFSPLFVSMINVAENTGRLDQALLQLANYYEQELETRKRIKAAMRYPTFVIVFITIAM 185

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           F ++ LV             +      + +A +   +   
Sbjct: 186 FILNILVIPEFASMFTRFGVELPLPTRILIATSNFFVNYW 225



 Score = 38.2 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 11/135 (8%), Positives = 37/135 (27%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         +++G+P++ ++A+      +              +  ++    +  
Sbjct: 268 RAQLSRFARTFSLMLKSGVPLNQSLALAGEALGNKFLE-----NRILEMKSAIEAGSTIS 322

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           V  +  +  +     +    +  G + E L  +S       +   K     +E      +
Sbjct: 323 VTAINSKIFTPLVIQMIAVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPLLLVIV 382

Query: 133 IGSLPFCVSTLVYFT 147
            G +      +    
Sbjct: 383 AGMVMVLALGIFLPM 397


>gi|297616457|ref|YP_003701616.1| type II secretion system F domain protein [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144294|gb|ADI01051.1| Type II secretion system F domain protein [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 403

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 56/165 (33%), Gaps = 6/165 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           +           +++GLP+   + V+  Q+ +  +R     ++ +   GL L E+++   
Sbjct: 65  EIVLFTRQFATMIKSGLPLLHCLQVLQLQARNRHLRQATTGIMRSVRRGLPLWEALAEYP 124

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +    + GG L E L  L+  L     +K +++   +     A + 
Sbjct: 125 -----SIFSDLYVQMVKAGETGGRLDEVLERLAAHLEKEHEVKQRIKNALIYPCTVAILT 179

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            ++   +++ V        N           L +    ++     
Sbjct: 180 LAVVAFLTSFVVPAFASVFNGAGVSLPTATRLLLGFTRLIRNHFW 224


>gi|33596530|ref|NP_884173.1| hypothetical protein BPP1912 [Bordetella parapertussis 12822]
 gi|33566299|emb|CAE37212.1| putative membrane protein [Bordetella parapertussis]
          Length = 298

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 49/135 (36%), Gaps = 1/135 (0%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISR 71
             + P  LD++     AGL +  A+          P+R    + +     G+   +++  
Sbjct: 153 ARELPFILDLMTLCAEAGLGMHGALQQAASHGPPGPLRELLVQALCDMRAGMPRRQAMQA 212

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +        V  +   ++     G +L   L  L+   R  ++ +A+  A+    K    
Sbjct: 213 LAARADSPPVRAWVGALAHADAQGMSLGPMLRGLATRYRAERHQRAERLAMEAPVKMLLP 272

Query: 132 IIGSLPFCVSTLVYF 146
           +I  +  C   ++ F
Sbjct: 273 LIACIFPCTFIVLAF 287


>gi|313903191|ref|ZP_07836584.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
           13965]
 gi|313466502|gb|EFR62023.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
           13965]
          Length = 408

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 49/137 (35%), Gaps = 5/137 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   +RAGLP+S  +  +V Q    +R     ++     G  L E+++        
Sbjct: 72  FFRQLATMIRAGLPLSACMESLVEQGRGRLRQVAAGILRDVQSGRLLHEAMAHA-----R 126

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +   ++L G L E LA L+     R  ++ KV++          +  ++  
Sbjct: 127 GAFDDVHVAMVRAAELSGRLDEVLARLAADEDRRLKVEGKVRSALAYPAFVLLVAAAVVA 186

Query: 139 CVSTLVYFTSPGYMNVL 155
            + T +  T  G     
Sbjct: 187 VMVTFIVPTFVGIFQQF 203



 Score = 36.6 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   VR+G P+ +A+      + + V       +  +     +    S        
Sbjct: 273 VTRGLASMVRSGFPLLEALDAAGRLAGNQVFR-----VALEETRKGVERGASLSAALRVS 327

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G L E L   + +  +  + +       +E      + G + F
Sbjct: 328 GIFPALVVDLVAIGERSGALDELLDRAAALAEEETDNRLAALTSLLEPVLVVLMGGVVGF 387

Query: 139 CVSTLVYFTS 148
              ++     
Sbjct: 388 IALSVFLPMF 397


>gi|301326851|ref|ZP_07220151.1| general secretion pathway protein F [Escherichia coli MS 78-1]
 gi|300846526|gb|EFK74286.1| general secretion pathway protein F [Escherichia coli MS 78-1]
          Length = 407

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +       ML+ ++      G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDTLQTSGVYW 229


>gi|327334808|gb|EGE76519.1| hypothetical protein HMPREF9344_00673 [Propionibacterium acnes
           HL097PA1]
          Length = 256

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 59/171 (34%), Gaps = 5/171 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            +   A   +   V  G   S A+  +             +    Q +G S+S+++    
Sbjct: 83  REVARATRSLAGRVSVGEIPSVALEHVADDVE-----VLAQARRAQAVGGSVSDALIATS 137

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R   +  +   +    + +  G  L+ A  +++     R  ++A + +    A+AS  I+
Sbjct: 138 RQPGMAGLVPLAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIM 197

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           G LP     + +         L     G   L  +     +G++    + +
Sbjct: 198 GLLPLVGLLMGHVVGAHPTVFLTTTWLGRACLLGSTLLACVGVLWSESLAD 248


>gi|317121506|ref|YP_004101509.1| type II secretion system F domain [Thermaerobacter marianensis DSM
           12885]
 gi|315591486|gb|ADU50782.1| Type II secretion system F domain [Thermaerobacter marianensis DSM
           12885]
          Length = 408

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 5/137 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   +RAGLP+S  +  +V Q    +R     ++     G  L E+++        
Sbjct: 72  FFRQLATMIRAGLPLSACMESLVEQGRGRLRQVAAGILRDVQSGRLLHEAMAHA-----R 126

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
              +     +   ++L G L E LA L+     R  ++ K+++          +  ++  
Sbjct: 127 GAFNDVHVAMVRAAELSGRLDEVLARLAADEDRRLKVEGKIRSALAYPAFVLLVAAAVVA 186

Query: 139 CVSTLVYFTSPGYMNVL 155
            + T +  T  G     
Sbjct: 187 VMVTFIVPTFVGIFQQF 203



 Score = 37.0 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 39/130 (30%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   VR+G P+ +A+      + + V       +  +     + +  S        
Sbjct: 273 VTRGLASMVRSGFPLLEALDAAGRLAGNQVFR-----VALEETRKGVEQGASLSAALRVS 327

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G L E L   + ++ +  + +    +  +E      + G + F
Sbjct: 328 GVFPALVVDLVAIGERSGALDELLDRAAALVEEETDNRLAALSSLLEPVLVVLMGGVVGF 387

Query: 139 CVSTLVYFTS 148
              ++     
Sbjct: 388 IALSVFLPMF 397


>gi|292490576|ref|YP_003526015.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
 gi|291579171|gb|ADE13628.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
          Length = 410

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 51/157 (32%), Gaps = 6/157 (3%)

Query: 23  IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +RAGLP+  A + ++      PVR    R+ E    G SL+E++            
Sbjct: 80  LATLLRAGLPLDRAFSTLIEIAEEGPVREILTRLQEQVRGGASLAEAMESQGET-----F 134

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S     +    + GG L   L  L+  +   K +K  V +  +       + G     + 
Sbjct: 135 SPLYISMIRAGEAGGALDVILGRLADFMERSKALKNAVTSALIYPAILVGVAGLSVIILL 194

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             V                    + +AA  +L     
Sbjct: 195 AFVVPQFQQLFEDAGKALPLATQIVIAAGDLLQNYWW 231


>gi|253701603|ref|YP_003022792.1| type II secretion system protein [Geobacter sp. M21]
 gi|251776453|gb|ACT19034.1| type II secretion system protein [Geobacter sp. M21]
          Length = 401

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 52/163 (31%), Gaps = 8/163 (4%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R      +       ++  ++AGLP+  A+  I+      +      + E    GL+LS 
Sbjct: 57  RKKIGNKELLLFNQELLVLLKAGLPILQALDTILESGGGKLNEILSAIREDVKGGLALSA 116

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +  +  R  P               +  G+L + +      L+  +  + K+    +   
Sbjct: 117 AFEKFPRVFPH-----LYIASVRAGERTGDLPQTIRRYIAFLKRTEGFRGKIIGALIYPV 171

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
               +I      +S L+ +  P +  +  +      +      
Sbjct: 172 ---ILIAVAAVAISLLLIYVVPTFSTIYADSGAALPIPTQILI 211



 Score = 38.2 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 46/135 (34%), Gaps = 7/135 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI-ETQHLGLSLSESISRMV 73
                   +   + +G+P+ +A+ + VG  ++ V      +       G  LS ++  M 
Sbjct: 266 ALAGFTRTLATVLGSGIPIVEALRMSVGTLNNKVLERGLLLAVHRVEEGSKLSTALEGMK 325

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
              P       +  +    +  G+L E L+++S    +       V   S+E      + 
Sbjct: 326 LMPP------LALRMLTVGETTGSLEEMLSDISDYFEEEIERDLHVLTTSIEPAIMVVMG 379

Query: 134 GSLPFCVSTLVYFTS 148
             +   + T+     
Sbjct: 380 VVIGVIIVTMYLPIF 394


>gi|119943892|ref|YP_941572.1| general secretion pathway protein F [Psychromonas ingrahamii 37]
 gi|119862496|gb|ABM01973.1| general secretion pathway protein F [Psychromonas ingrahamii 37]
          Length = 396

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/188 (11%), Positives = 50/188 (26%), Gaps = 16/188 (8%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
                 D       +   V + +P+ + +  +  Q   P        +     G  L  +
Sbjct: 51  KKIKTADLALITRQLSTLVASAIPLEECLHAVAEQCDKPNIKGMIVSVR----GGVLEGN 106

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                              +    +  G+L + L  L+     R+ MK+K+    +    
Sbjct: 107 SLADSMRAFPLIFDNLFCSMVAAGEKSGHLDQVLDRLADYAEQREEMKSKMTQALIYPLI 166

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA------------AAFMLIGI 176
              +  S+   + T V     G    +  D        +A               +   +
Sbjct: 167 LTLVAISVVAILLTSVVPQVVGQFEHMSADLPASTKFLIAASDGLNSYGLIIVILIFASL 226

Query: 177 MVMRLMIN 184
            + + ++ 
Sbjct: 227 FIFKRLLR 234


>gi|307545560|ref|YP_003898039.1| type IV pilus assembly protein PilC [Halomonas elongata DSM 2581]
 gi|307217584|emb|CBV42854.1| K02653 type IV pilus assembly protein PilC [Halomonas elongata DSM
           2581]
          Length = 408

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/164 (9%), Positives = 42/164 (25%), Gaps = 4/164 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            D       +   +RAG+PV   + V+      P      R++           +     
Sbjct: 69  RDITLFARQMATLLRAGIPVLQGLGVVAKGVEKPAM----RLLVEALSKEVTEGASVAEA 124

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +        +    +  G L   L  ++      + ++ +V+             
Sbjct: 125 LGRHPRHFGGLFIHLVAAGEQSGTLERMLDRVATHKEKIERLQGRVRRALWYPAVVLVTG 184

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
            ++   +   V     G       +      L ++ +  +    
Sbjct: 185 VAVAALLLVKVVPRFEGLFRDFGAELPALTRLTLSLSQAVQHYW 228


>gi|297520181|ref|ZP_06938567.1| general secretory pathway component, cryptic [Escherichia coli
           OP50]
          Length = 202

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 53/155 (34%), Gaps = 10/155 (6%)

Query: 5   IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62
           +K R  +    +       +     A LP+ +++AVI  QSS+  +     +V      G
Sbjct: 49  VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLGDVLNQVRSAILEG 108

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             LS+++                  +    +  G L+  L  L+    +R+ +++K+   
Sbjct: 109 HPLSDALQHFPTL-----FDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQS 163

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
            +       +       V  L+    P      ++
Sbjct: 164 LIYP---CMLTTVAIGVVIILLTAVVPKITEQFVH 195


>gi|229520024|ref|ZP_04409453.1| MSHA biogenesis protein MshG [Vibrio cholerae TM 11079-80]
 gi|229342973|gb|EEO07962.1| MSHA biogenesis protein MshG [Vibrio cholerae TM 11079-80]
          Length = 407

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/165 (9%), Positives = 43/165 (26%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72
           +        +    +AG+P+  ++  +     +         V      G +LS      
Sbjct: 67  EVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS-----A 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +     S     +    +  G L +AL  L+         + +++            
Sbjct: 122 SMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITF 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +    F ++  V        +    D      + +  +   +   
Sbjct: 182 VLLAMFVLNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYW 226



 Score = 41.3 bits (95), Expect = 0.069,   Method: Composition-based stats.
 Identities = 10/135 (7%), Positives = 36/135 (26%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         + AG+P++ ++A+      +    +         +   +   ++  
Sbjct: 269 RAQLSRFARTFSLMLSAGVPLNQSLALSAEAIDNKFLEQRIL-----EMKSQIESGVAVS 323

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +  +  +     +    +  G + E L  +S       +   K     +E     ++
Sbjct: 324 ATAINAKIFTPLVIQMMSVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLLFV 383

Query: 133 IGSLPFCVSTLVYFT 147
              +      +    
Sbjct: 384 AAMVLVLALGIFLPM 398


>gi|229525100|ref|ZP_04414505.1| MSHA biogenesis protein MshG [Vibrio cholerae bv. albensis VL426]
 gi|229338681|gb|EEO03698.1| MSHA biogenesis protein MshG [Vibrio cholerae bv. albensis VL426]
          Length = 407

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/165 (9%), Positives = 43/165 (26%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72
           +        +    +AG+P+  ++  +     +         V      G +LS      
Sbjct: 67  EVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS-----A 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +     S     +    +  G L +AL  L+         + +++            
Sbjct: 122 SMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITF 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +    F ++  V        +    D      + +  +   +   
Sbjct: 182 VLLAMFVLNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYW 226



 Score = 41.3 bits (95), Expect = 0.069,   Method: Composition-based stats.
 Identities = 10/135 (7%), Positives = 36/135 (26%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         + AG+P++ ++A+      +    +         +   +   ++  
Sbjct: 269 RAQLSRFARTFSLMLSAGVPLNQSLALSAEAIDNKFLEQRIL-----EMKSQIESGVAVS 323

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +  +  +     +    +  G + E L  +S       +   K     +E     ++
Sbjct: 324 ATAINAKIFTPLVIQMMSVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLLFV 383

Query: 133 IGSLPFCVSTLVYFT 147
              +      +    
Sbjct: 384 AAMVLVLALGIFLPM 398


>gi|300821891|ref|ZP_07102035.1| type II secretion system F domain protein [Escherichia coli MS
           119-7]
 gi|300525491|gb|EFK46560.1| type II secretion system F domain protein [Escherichia coli MS
           119-7]
          Length = 400

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/182 (11%), Positives = 54/182 (29%), Gaps = 22/182 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +     +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLM 235

Query: 180 RL 181
           R 
Sbjct: 236 RR 237


>gi|88704168|ref|ZP_01101882.1| general secretory pathway protein F [Congregibacter litoralis KT71]
 gi|88701219|gb|EAQ98324.1| general secretory pathway protein F [Congregibacter litoralis KT71]
          Length = 393

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 55/162 (33%), Gaps = 6/162 (3%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +RAGLP+  ++ V++  +S   + +    V+++   G +LS ++            
Sbjct: 63  LAVLLRAGLPLDRSLKVLIEMASLPSMGALLSDVLKSVKDGKALSVALEPYADLFG---- 118

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F   +    +  G +S  L  L   L + K  +  V +  +       +       + 
Sbjct: 119 -RFYLSMLRSGEASGEMSAVLDRLVAHLEESKATRDSVVSALIYPAILLVVAVLSIVVML 177

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             V        N + +       + + +A  +     +  + 
Sbjct: 178 AFVVPQFESLFNDMGDSLPTLTRVVINSADFVTAWFWLLAIA 219


>gi|297580544|ref|ZP_06942470.1| MSHA biogenesis protein MshG [Vibrio cholerae RC385]
 gi|297534960|gb|EFH73795.1| MSHA biogenesis protein MshG [Vibrio cholerae RC385]
          Length = 407

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/165 (9%), Positives = 43/165 (26%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72
           +        +    +AG+P+  ++  +     +         V      G +LS      
Sbjct: 67  EVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS-----A 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +     S     +    +  G L +AL  L+         + +++            
Sbjct: 122 SMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITF 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +    F ++  V        +    D      + +  +   +   
Sbjct: 182 VLLAMFVLNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYW 226



 Score = 41.3 bits (95), Expect = 0.063,   Method: Composition-based stats.
 Identities = 10/135 (7%), Positives = 36/135 (26%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         + AG+P++ ++A+      +    +         +   +   ++  
Sbjct: 269 RAQLSRFARTFSLMLSAGVPLNQSLALSAEAIDNKFLEQRIL-----EMKSQIESGVAVS 323

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +  +  +     +    +  G + E L  +S       +   K     +E     ++
Sbjct: 324 ATAINAKIFTPLVIQMMSVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLVFV 383

Query: 133 IGSLPFCVSTLVYFT 147
              +      +    
Sbjct: 384 AAMVLVLALGIFLPM 398


>gi|293417980|ref|ZP_06660602.1| transporter HofC [Escherichia coli B185]
 gi|291430698|gb|EFF03696.1| transporter HofC [Escherichia coli B185]
          Length = 400

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/182 (11%), Positives = 54/182 (29%), Gaps = 22/182 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +     +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLM 235

Query: 180 RL 181
           R 
Sbjct: 236 RR 237


>gi|262404737|ref|ZP_06081292.1| type 4 fimbrial assembly protein PilC [Vibrio sp. RC586]
 gi|262349769|gb|EEY98907.1| type 4 fimbrial assembly protein PilC [Vibrio sp. RC586]
          Length = 408

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 49/149 (32%), Gaps = 6/149 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   +  G+P+  A+ ++        ++S   ++ ++   G  LS+++  
Sbjct: 67  TKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRT 126

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              +            +    ++ GNL E    L+      + ++AKV    +       
Sbjct: 127 ASAH-----FDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVL 181

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
           +   + + + T+V             +  
Sbjct: 182 VALGVSYLMLTMVIPEFESMFKGFGAELP 210



 Score = 36.3 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/131 (9%), Positives = 36/131 (27%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +  S  AG+P+  ++      S +         V      G+ +  ++        
Sbjct: 277 FSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVHRDTAAGMPMYIAMRN------ 330

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +        + +  +  G L + L  ++ I     +         +E     ++   + 
Sbjct: 331 TEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGIVVG 390

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 391 GLVVAMYLPIF 401


>gi|262273166|ref|ZP_06050982.1| general secretion pathway protein F/type II secretory pathway
           component PulF [Grimontia hollisae CIP 101886]
 gi|262222744|gb|EEY74053.1| general secretion pathway protein F/type II secretory pathway
           component PulF [Grimontia hollisae CIP 101886]
          Length = 406

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/159 (11%), Positives = 52/159 (32%), Gaps = 9/159 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
            ++       +   V+A +P+ + +  +  Q+    +++    V      G +LS+S+  
Sbjct: 65  TNELALITRQLATLVQAAMPLEECIKAVADQTEKQRLKNMLTGVRARVVEGYTLSDSLGD 124

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    +  G+L   L  L+  + +R+ +K K+    +       
Sbjct: 125 YP-----HVFDQLFRAMVAAGEKSGHLGPVLERLADYVENRQQVKNKLIQAMVYPM---V 176

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           +  +    V+ L+    P  +   +        +     
Sbjct: 177 LTVAAIGIVAFLLATVVPDIVGQFLQTGAELPNITQVLL 215


>gi|157159575|ref|YP_001456893.1| type IV pilin biogenesis protein [Escherichia coli HS]
 gi|187732598|ref|YP_001878915.1| type IV pilin biogenesis protein [Shigella boydii CDC 3083-94]
 gi|193063232|ref|ZP_03044323.1| type IV pilus assembly protein PilC [Escherichia coli E22]
 gi|193071239|ref|ZP_03052160.1| type IV pilus assembly protein PilC [Escherichia coli E110019]
 gi|194430297|ref|ZP_03062791.1| type IV pilus assembly protein PilC [Escherichia coli B171]
 gi|209917297|ref|YP_002291381.1| type IV pilin biogenesis protein [Escherichia coli SE11]
 gi|218552686|ref|YP_002385599.1| type IV pilin biogenesis protein [Escherichia coli IAI1]
 gi|218693572|ref|YP_002401239.1| type IV pilin biogenesis protein [Escherichia coli 55989]
 gi|260842340|ref|YP_003220118.1| assembly protein HofC in type IV pilin biogenesis, transmembrane
           protein [Escherichia coli O103:H2 str. 12009]
 gi|260853318|ref|YP_003227209.1| assembly protein HofC in type IV pilin biogenesis, transmembrane
           protein [Escherichia coli O26:H11 str. 11368]
 gi|260866257|ref|YP_003232659.1| assembly protein HofC in type IV pilin biogenesis, transmembrane
           protein [Escherichia coli O111:H- str. 11128]
 gi|307311445|ref|ZP_07591087.1| Type II secretion system F domain protein [Escherichia coli W]
 gi|331666341|ref|ZP_08367222.1| protein transport protein HofC [Escherichia coli TA271]
 gi|331680678|ref|ZP_08381337.1| protein transport protein HofC [Escherichia coli H591]
 gi|157065255|gb|ABV04510.1| type IV pilus assembly protein PilC [Escherichia coli HS]
 gi|187429590|gb|ACD08864.1| type IV pilus assembly protein PilC [Shigella boydii CDC 3083-94]
 gi|192931140|gb|EDV83743.1| type IV pilus assembly protein PilC [Escherichia coli E22]
 gi|192955449|gb|EDV85931.1| type IV pilus assembly protein PilC [Escherichia coli E110019]
 gi|194411652|gb|EDX27980.1| type IV pilus assembly protein PilC [Escherichia coli B171]
 gi|209910556|dbj|BAG75630.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|218350304|emb|CAU95987.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli 55989]
 gi|218359454|emb|CAQ96992.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli IAI1]
 gi|257751967|dbj|BAI23469.1| assembly protein HofC in type IV pilin biogenesis, transmembrane
           protein [Escherichia coli O26:H11 str. 11368]
 gi|257757487|dbj|BAI28984.1| assembly protein HofC in type IV pilin biogenesis, transmembrane
           protein [Escherichia coli O103:H2 str. 12009]
 gi|257762613|dbj|BAI34108.1| assembly protein HofC in type IV pilin biogenesis, transmembrane
           protein [Escherichia coli O111:H- str. 11128]
 gi|306908424|gb|EFN38922.1| Type II secretion system F domain protein [Escherichia coli W]
 gi|320183609|gb|EFW58452.1| Type IV fimbrial assembly protein PilC [Shigella flexneri CDC
           796-83]
 gi|323157827|gb|EFZ43930.1| bacterial type II secretion system F domain protein [Escherichia
           coli EPECa14]
 gi|323160098|gb|EFZ46059.1| bacterial type II secretion system protein F domain protein
           [Escherichia coli E128010]
 gi|323176412|gb|EFZ62004.1| bacterial type II secretion system protein F domain protein
           [Escherichia coli 1180]
 gi|323181801|gb|EFZ67214.1| bacterial type II secretion system protein F domain protein
           [Escherichia coli 1357]
 gi|323380115|gb|ADX52383.1| Type II secretion system F domain protein [Escherichia coli KO11]
 gi|324017735|gb|EGB86954.1| type II secretion system F domain protein [Escherichia coli MS
           117-3]
 gi|324118454|gb|EGC12348.1| type II secretion system protein F [Escherichia coli E1167]
 gi|331066552|gb|EGI38429.1| protein transport protein HofC [Escherichia coli TA271]
 gi|331072141|gb|EGI43477.1| protein transport protein HofC [Escherichia coli H591]
          Length = 400

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/182 (11%), Positives = 54/182 (29%), Gaps = 22/182 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +     +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLM 235

Query: 180 RL 181
           R 
Sbjct: 236 RR 237


>gi|205351483|ref|YP_002225284.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205271264|emb|CAR36052.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326626510|gb|EGE32853.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 400

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q          R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P          +    +L G L+E    L+R  + ++ +   V+           
Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPA---I 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183
           I+      V  +++F  P +  +  +      LL      +   G     L++
Sbjct: 169 ILTMAALVVFAILHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGWLIL 221


>gi|161612487|ref|YP_001586452.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168234908|ref|ZP_02659966.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194735161|ref|YP_002113159.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|161361851|gb|ABX65619.1| hypothetical protein SPAB_00177 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194710663|gb|ACF89884.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197291724|gb|EDY31074.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 400

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q          R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAQQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P          +    +L G L+E    L+R  + ++ +   V+           
Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPA---I 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183
           I+      V  +++F  P +  +  +      LL      +   G     L++
Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGWLIL 221


>gi|324114989|gb|EGC08954.1| general secretion pathway protein F [Escherichia fergusonii B253]
          Length = 407

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +        L+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRALIAMSDALQTSGVYW 229


>gi|15640433|ref|NP_230060.1| MSHA biogenesis protein MshG [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121587605|ref|ZP_01677370.1| MSHA biogenesis protein MshG [Vibrio cholerae 2740-80]
 gi|121727270|ref|ZP_01680429.1| MSHA biogenesis protein MshG [Vibrio cholerae V52]
 gi|147674016|ref|YP_001218674.1| MSHA biogenesis protein MshG [Vibrio cholerae O395]
 gi|153802229|ref|ZP_01956815.1| MSHA biogenesis protein MshG [Vibrio cholerae MZO-3]
 gi|153818247|ref|ZP_01970914.1| MSHA biogenesis protein MshG [Vibrio cholerae NCTC 8457]
 gi|153822260|ref|ZP_01974927.1| MSHA biogenesis protein MshG [Vibrio cholerae B33]
 gi|153825652|ref|ZP_01978319.1| MSHA biogenesis protein MshG [Vibrio cholerae MZO-2]
 gi|227080617|ref|YP_002809168.1| MSHA biogenesis protein MshG [Vibrio cholerae M66-2]
 gi|229507046|ref|ZP_04396552.1| MSHA biogenesis protein MshG [Vibrio cholerae BX 330286]
 gi|229508799|ref|ZP_04398291.1| MSHA biogenesis protein MshG [Vibrio cholerae B33]
 gi|229519787|ref|ZP_04409230.1| MSHA biogenesis protein MshG [Vibrio cholerae RC9]
 gi|229530251|ref|ZP_04419639.1| MSHA biogenesis protein MshG [Vibrio cholerae 12129(1)]
 gi|229606312|ref|YP_002876960.1| MSHA biogenesis protein MshG [Vibrio cholerae MJ-1236]
 gi|254291311|ref|ZP_04962105.1| MSHA biogenesis protein MshG [Vibrio cholerae AM-19226]
 gi|254850638|ref|ZP_05239988.1| MSHA biogenesis protein MshG [Vibrio cholerae MO10]
 gi|255743791|ref|ZP_05417748.1| MSHA biogenesis protein MshG [Vibrio cholera CIRS 101]
 gi|262153596|ref|ZP_06028724.1| MSHA biogenesis protein MshG [Vibrio cholerae INDRE 91/1]
 gi|262167630|ref|ZP_06035334.1| MSHA biogenesis protein MshG [Vibrio cholerae RC27]
 gi|298501061|ref|ZP_07010862.1| MSHA biogenesis protein MshG [Vibrio cholerae MAK 757]
 gi|9654827|gb|AAF93579.1| MSHA biogenesis protein MshG [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548178|gb|EAX58250.1| MSHA biogenesis protein MshG [Vibrio cholerae 2740-80]
 gi|121630389|gb|EAX62784.1| MSHA biogenesis protein MshG [Vibrio cholerae V52]
 gi|124122253|gb|EAY40996.1| MSHA biogenesis protein MshG [Vibrio cholerae MZO-3]
 gi|126511206|gb|EAZ73800.1| MSHA biogenesis protein MshG [Vibrio cholerae NCTC 8457]
 gi|126520216|gb|EAZ77439.1| MSHA biogenesis protein MshG [Vibrio cholerae B33]
 gi|146315899|gb|ABQ20438.1| MSHA biogenesis protein MshG [Vibrio cholerae O395]
 gi|149740682|gb|EDM54789.1| MSHA biogenesis protein MshG [Vibrio cholerae MZO-2]
 gi|150422767|gb|EDN14720.1| MSHA biogenesis protein MshG [Vibrio cholerae AM-19226]
 gi|227008505|gb|ACP04717.1| MSHA biogenesis protein MshG [Vibrio cholerae M66-2]
 gi|227012261|gb|ACP08471.1| MSHA biogenesis protein MshG [Vibrio cholerae O395]
 gi|229332024|gb|EEN97512.1| MSHA biogenesis protein MshG [Vibrio cholerae 12129(1)]
 gi|229344476|gb|EEO09451.1| MSHA biogenesis protein MshG [Vibrio cholerae RC9]
 gi|229354202|gb|EEO19133.1| MSHA biogenesis protein MshG [Vibrio cholerae B33]
 gi|229355791|gb|EEO20711.1| MSHA biogenesis protein MshG [Vibrio cholerae BX 330286]
 gi|229368967|gb|ACQ59390.1| MSHA biogenesis protein MshG [Vibrio cholerae MJ-1236]
 gi|254846343|gb|EET24757.1| MSHA biogenesis protein MshG [Vibrio cholerae MO10]
 gi|255738540|gb|EET93928.1| MSHA biogenesis protein MshG [Vibrio cholera CIRS 101]
 gi|262023966|gb|EEY42663.1| MSHA biogenesis protein MshG [Vibrio cholerae RC27]
 gi|262030623|gb|EEY49259.1| MSHA biogenesis protein MshG [Vibrio cholerae INDRE 91/1]
 gi|297540309|gb|EFH76369.1| MSHA biogenesis protein MshG [Vibrio cholerae MAK 757]
 gi|327483263|gb|AEA77670.1| MSHA biogenesis protein MshG [Vibrio cholerae LMA3894-4]
          Length = 407

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/165 (9%), Positives = 43/165 (26%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72
           +        +    +AG+P+  ++  +     +         V      G +LS      
Sbjct: 67  EVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS-----A 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +     S     +    +  G L +AL  L+         + +++            
Sbjct: 122 SMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITF 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +    F ++  V        +    D      + +  +   +   
Sbjct: 182 VLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYW 226



 Score = 41.3 bits (95), Expect = 0.064,   Method: Composition-based stats.
 Identities = 10/135 (7%), Positives = 35/135 (25%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         + AG+P++ ++A+      +    +         +   +   ++  
Sbjct: 269 RAQLSRFARTFSLMLSAGVPLNQSLALSAEAIDNKFLEQRIL-----EMKSQIESGVAVS 323

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +     +     +    +  G + E L  +S       +   K     +E     ++
Sbjct: 324 ATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLVFV 383

Query: 133 IGSLPFCVSTLVYFT 147
              +      +    
Sbjct: 384 AAMVLVLALGIFLPM 398


>gi|309777429|ref|ZP_07672387.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308914825|gb|EFP60607.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 201

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 58/152 (38%), Gaps = 1/152 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  ++KKR  +   D P+ +  I   V AG+ + +A A +       +  E +R +E  +
Sbjct: 48  ISDVMKKRDMEISRDLPSIISKITLLVNAGMVLREAWAQVAQTGDTTLYKEMQRAVEDMN 107

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKV 119
            G+S  ++     +     +V  F + +    S+   +L   L   S+I    K    + 
Sbjct: 108 NGMSEVDAYMDFSQRCQSAKVRKFISTVEQNVSKGNKDLVAYLKEQSQIAWTEKKEYVRQ 167

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
           Q  +  +K    I       +  ++      +
Sbjct: 168 QGETASSKMLIPIGIMFVGILIMVIVPIFANF 199


>gi|254226013|ref|ZP_04919613.1| MSHA biogenesis protein MshG [Vibrio cholerae V51]
 gi|125621469|gb|EAZ49803.1| MSHA biogenesis protein MshG [Vibrio cholerae V51]
          Length = 407

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/165 (9%), Positives = 43/165 (26%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72
           +        +    +AG+P+  ++  +     +         V      G +LS      
Sbjct: 67  EVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS-----A 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +     S     +    +  G L +AL  L+         + +++            
Sbjct: 122 SMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITF 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +    F ++  V        +    D      + +  +   +   
Sbjct: 182 VLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYW 226



 Score = 41.3 bits (95), Expect = 0.065,   Method: Composition-based stats.
 Identities = 10/135 (7%), Positives = 35/135 (25%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         + AG+P++ ++A+      +    +         +   +   ++  
Sbjct: 269 RAQLSRFARTFSLMLSAGVPLNQSLALSAEAIDNKFLEQRIL-----EMKSQIESGVAVS 323

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +     +     +    +  G + E L  +S       +   K     +E     ++
Sbjct: 324 ATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLVFV 383

Query: 133 IGSLPFCVSTLVYFT 147
              +      +    
Sbjct: 384 AAMVLVLALGIFLPM 398


>gi|288937074|ref|YP_003441133.1| general secretion pathway protein F [Klebsiella variicola At-22]
 gi|288891783|gb|ADC60101.1| general secretion pathway protein F [Klebsiella variicola At-22]
          Length = 404

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/143 (11%), Positives = 40/143 (27%), Gaps = 7/143 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           D       +   V AG+P+  A+  +  Q          R +        L         
Sbjct: 65  DLALLTRQLATLVAAGIPLEKALDAVAQQCE----KAPLRTLMAGVRSKVLEGHSLAEAM 120

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                        +    +  G+L   L  L+     R+ ++A++    +       +  
Sbjct: 121 RGYPACFDGLFCAMVAAGETSGHLDGVLNRLADYTEQRQQLRARLLQAMIYPI---VLTL 177

Query: 135 SLPFCVSTLVYFTSPGYMNVLIN 157
                ++ L+    P  +   ++
Sbjct: 178 VAISVIAILLSTVVPKVVEQFVH 200


>gi|258620853|ref|ZP_05715887.1| type IV pilin biogenesis protein PilC [Vibrio mimicus VM573]
 gi|258586241|gb|EEW10956.1| type IV pilin biogenesis protein PilC [Vibrio mimicus VM573]
          Length = 408

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 49/148 (33%), Gaps = 6/148 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +  G+P+  A+ ++        ++S   ++ ++   G  LS+++   
Sbjct: 68  KDITILTRQLATMLTTGVPIVQALKLVGDSHRKAEMKSILAQITKSVEAGTPLSKAMRTA 127

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +            +    ++ GNL E    L+      + ++AKV    +       +
Sbjct: 128 SSH-----FDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLV 182

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR 160
              + + + T+V             +  
Sbjct: 183 ALGVSYLMLTMVIPEFESMFKGFGAELP 210



 Score = 36.3 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/131 (9%), Positives = 36/131 (27%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +  S  AG+P+  ++      S +         V      G+ +  ++        
Sbjct: 277 FSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAAGMPMYIAMRN------ 330

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +        + +  +  G L + L  ++ I     +         +E     ++   + 
Sbjct: 331 TEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVG 390

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 391 GLVVAMYLPIF 401


>gi|258625145|ref|ZP_05720062.1| type IV pilin biogenesis protein PilC [Vibrio mimicus VM603]
 gi|258582596|gb|EEW07428.1| type IV pilin biogenesis protein PilC [Vibrio mimicus VM603]
          Length = 408

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 49/148 (33%), Gaps = 6/148 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +  G+P+  A+ ++        ++S   ++ ++   G  LS+++   
Sbjct: 68  KDITILTRQLATMLTTGVPIVQALKLVGDSHRKAEMKSILAQITKSVEAGTPLSKAMRTA 127

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +            +    ++ GNL E    L+      + ++AKV    +       +
Sbjct: 128 SSH-----FDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLV 182

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR 160
              + + + T+V             +  
Sbjct: 183 ALGVSYLMLTMVIPEFESMFKGFGAELP 210



 Score = 36.3 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/131 (9%), Positives = 36/131 (27%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +  S  AG+P+  ++      S +         V      G+ +  ++        
Sbjct: 277 FSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAAGMPMYIAMRN------ 330

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +        + +  +  G L + L  ++ I     +         +E     ++   + 
Sbjct: 331 TEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVG 390

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 391 GLVVAMYLPIF 401


>gi|168230423|ref|ZP_02655481.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194468768|ref|ZP_03074752.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194455132|gb|EDX43971.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205334971|gb|EDZ21735.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 400

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q          R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAQQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P          +    +L G L+E    L+R  + ++ +   V+           
Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPA---I 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183
           I+      V  +++F  P +  +  +      LL      +   G     L++
Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGWLIL 221


>gi|289424514|ref|ZP_06426297.1| conserved hypothetical protein [Propionibacterium acnes SK187]
 gi|289155211|gb|EFD03893.1| conserved hypothetical protein [Propionibacterium acnes SK187]
 gi|313765313|gb|EFS36677.1| conserved hypothetical protein [Propionibacterium acnes HL013PA1]
 gi|313793204|gb|EFS41271.1| conserved hypothetical protein [Propionibacterium acnes HL110PA1]
 gi|313802707|gb|EFS43925.1| conserved hypothetical protein [Propionibacterium acnes HL110PA2]
 gi|313814295|gb|EFS52009.1| conserved hypothetical protein [Propionibacterium acnes HL025PA1]
 gi|313815408|gb|EFS53122.1| conserved hypothetical protein [Propionibacterium acnes HL059PA1]
 gi|313828806|gb|EFS66520.1| conserved hypothetical protein [Propionibacterium acnes HL063PA2]
 gi|314916035|gb|EFS79866.1| conserved hypothetical protein [Propionibacterium acnes HL005PA4]
 gi|314917187|gb|EFS81018.1| conserved hypothetical protein [Propionibacterium acnes HL050PA1]
 gi|314921686|gb|EFS85517.1| conserved hypothetical protein [Propionibacterium acnes HL050PA3]
 gi|314930991|gb|EFS94822.1| conserved hypothetical protein [Propionibacterium acnes HL067PA1]
 gi|314955078|gb|EFS99484.1| conserved hypothetical protein [Propionibacterium acnes HL027PA1]
 gi|314959118|gb|EFT03220.1| conserved hypothetical protein [Propionibacterium acnes HL002PA1]
 gi|314964616|gb|EFT08716.1| conserved hypothetical protein [Propionibacterium acnes HL082PA1]
 gi|314969716|gb|EFT13814.1| conserved hypothetical protein [Propionibacterium acnes HL037PA1]
 gi|315078729|gb|EFT50755.1| conserved hypothetical protein [Propionibacterium acnes HL053PA2]
 gi|315099517|gb|EFT71493.1| conserved hypothetical protein [Propionibacterium acnes HL059PA2]
 gi|315101976|gb|EFT73952.1| conserved hypothetical protein [Propionibacterium acnes HL046PA1]
 gi|315110101|gb|EFT82077.1| conserved hypothetical protein [Propionibacterium acnes HL030PA2]
 gi|327454502|gb|EGF01157.1| hypothetical protein HMPREF9581_00677 [Propionibacterium acnes
           HL087PA3]
 gi|327456571|gb|EGF03226.1| hypothetical protein HMPREF9586_00950 [Propionibacterium acnes
           HL083PA2]
 gi|327457153|gb|EGF03808.1| hypothetical protein HMPREF9584_00349 [Propionibacterium acnes
           HL092PA1]
 gi|328756266|gb|EGF69882.1| hypothetical protein HMPREF9579_00755 [Propionibacterium acnes
           HL087PA1]
 gi|328757047|gb|EGF70663.1| hypothetical protein HMPREF9588_01290 [Propionibacterium acnes
           HL025PA2]
          Length = 256

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 59/171 (34%), Gaps = 5/171 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            +   A   +   V  G   S A+  +             +    Q +G S+S+++    
Sbjct: 83  REVARATRALAGRVSVGEIPSVALEHVADDVE-----VLAQARRAQAVGGSVSDALIATS 137

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R   +  +   +    + +  G  L+ A  +++     R  ++A + +    A+AS  I+
Sbjct: 138 RQPGMAGLVPLAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIM 197

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           G LP     + +         L     G   L  +     +G++    + +
Sbjct: 198 GLLPLVGLLMGHVVGAHPTVFLTTTWLGRACLLGSTLLACVGVLWSESLAD 248


>gi|291286430|ref|YP_003503246.1| Type II secretion system F domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883590|gb|ADD67290.1| Type II secretion system F domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 397

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 59/180 (32%), Gaps = 11/180 (6%)

Query: 6   KKRTAKFL-----DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           K++  ++         P+    +   + +G+P++ A+ V      D       R +    
Sbjct: 48  KRKRDRYSFSLKKKALPDIFFQLSILISSGIPLTRALKVTADTVKDTKMK---RSLLDME 104

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
             +S  +  S        +  +     +   S+  G LS  L ++SR   +R+    K+ 
Sbjct: 105 EKVSSGKRFSD-AMKPYEKIYTELYIHLIRTSEKVGRLSSVLLDISRFEEERRKTGEKIT 163

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMV 178
           +  M       +   +   + T V             D      +LLG +      G+ V
Sbjct: 164 SAMMYPSVVMMLGLGVVGFMLTFVVPKLESIFKSAGADIPSSTKILLGTSRFLQDYGMYV 223


>gi|50841724|ref|YP_054951.1| hypothetical protein PPA0231 [Propionibacterium acnes KPA171202]
 gi|50839326|gb|AAT81993.1| hypothetical protein PPA0231 [Propionibacterium acnes KPA171202]
          Length = 256

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 59/171 (34%), Gaps = 5/171 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            +   A   +   V  G   S A+  +             +    Q +G S+S+++    
Sbjct: 83  REVARATRALAGRVSVGEIPSVALEHVADDVE-----VLAQARRAQAVGGSVSDALIATS 137

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R   +  +   +    + +  G  L+ A  +++     R  ++A + +    A+AS  I+
Sbjct: 138 RQPGMAGLVPLAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIM 197

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           G LP     + +         L     G   L  +     +G++    + +
Sbjct: 198 GLLPLVGLLMGHVVGAHPTVFLTTTWLGRACLLGSTLLACVGVLWSESLAD 248


>gi|327189775|gb|EGE56919.1| putative tadC pilus assembly protein [Rhizobium etli CNPAF512]
          Length = 314

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 71/165 (43%), Gaps = 4/165 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS---EFRRVIE 57
           +      +  ++   FP+ +D+++  + AG+ +  A   +  +  D  +        ++ 
Sbjct: 149 IDRRGAAKEREYRRLFPDFMDMLIVCLDAGMSIEAAANRVAREFVDKQQDFGLHLSIMML 208

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G  L E+++ +   + + E    S +     +LG ++++ L   S+ +RD + ++A
Sbjct: 209 EVRGGRRLREALANLATRLRIDEARALSVLFRQSEELGTSVTQTLRVYSKEMRDIRVVRA 268

Query: 118 KVQALSMEAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRG 161
           + +A ++  K    +   L P  +  ++       +++L+    G
Sbjct: 269 EEKANALPVKMLLPLGAFLFPVSLFIVLVPVVMRVVSLLMGMKPG 313


>gi|254168637|ref|ZP_04875480.1| Bacterial type II secretion system protein F domain
           [Aciduliprofundum boonei T469]
 gi|289595686|ref|YP_003482382.1| Type II secretion system F domain protein [Aciduliprofundum boonei
           T469]
 gi|197622471|gb|EDY35043.1| Bacterial type II secretion system protein F domain
           [Aciduliprofundum boonei T469]
 gi|289533473|gb|ADD07820.1| Type II secretion system F domain protein [Aciduliprofundum boonei
           T469]
          Length = 290

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 66/153 (43%), Gaps = 3/153 (1%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L  ++  K  + FP+ L  +  S R G+ ++D++ V        +  E +R+      G
Sbjct: 57  MLHTRKIKKMEERFPDFLRDVAESSRFGMTLADSIVVASSGKYGALTDEIKRMASKISWG 116

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + + +++      +    +   + +I   ++ GGN+++ L+ ++R  R+ +    +    
Sbjct: 117 VPVKDALLSFNERVKTPLIDRITAIIIKSNEAGGNIADVLSMVARNARESQLAAKER--- 173

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           ++E     +++ +  F     +   +  ++  +
Sbjct: 174 NIEMFTYGFVLLTSFFVFLATIIILNNSFLPEM 206


>gi|33601083|ref|NP_888643.1| hypothetical protein BB2100 [Bordetella bronchiseptica RB50]
 gi|33575518|emb|CAE32596.1| putative membrane protein [Bordetella bronchiseptica RB50]
          Length = 298

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 49/135 (36%), Gaps = 1/135 (0%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISR 71
             + P  LD++     AGL +  A+          P+R    + +     G+   +++  
Sbjct: 153 ARELPFILDLMTLCAEAGLGMHGALQQAASHGPPGPLRELLVQALCDMRAGMPRRQAMQA 212

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +        V  +   ++     G +L   L  L+   R  ++ +A+  A+    K    
Sbjct: 213 LAARADSPPVRAWVGALAHADAQGMSLGPMLRGLATRYRAERHQRAERLAMEAPVKMLLP 272

Query: 132 IIGSLPFCVSTLVYF 146
           +I  +  C   ++ F
Sbjct: 273 LIACIFPCTFIVLAF 287


>gi|322615964|gb|EFY12881.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620748|gb|EFY17608.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623900|gb|EFY20737.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627348|gb|EFY24139.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322630655|gb|EFY27419.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638125|gb|EFY34826.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640611|gb|EFY37262.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645604|gb|EFY42131.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648101|gb|EFY44568.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656866|gb|EFY53152.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657423|gb|EFY53695.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663742|gb|EFY59942.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322666575|gb|EFY62753.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672266|gb|EFY68378.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676422|gb|EFY72493.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679485|gb|EFY75530.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686186|gb|EFY82170.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195030|gb|EFZ80216.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323200061|gb|EFZ85148.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201118|gb|EFZ86187.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323209515|gb|EFZ94448.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212233|gb|EFZ97057.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216538|gb|EGA01264.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323219887|gb|EGA04365.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225833|gb|EGA10053.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323228625|gb|EGA12754.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236761|gb|EGA20837.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239738|gb|EGA23785.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242214|gb|EGA26243.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249362|gb|EGA33278.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252305|gb|EGA36156.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256605|gb|EGA40335.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262974|gb|EGA46524.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265459|gb|EGA48955.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271753|gb|EGA55171.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 400

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q          R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAQQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P          +    +L G L++    L+R  + ++ +   V+           
Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLADCCFELARQQKAQRQITVSVKKALRYPA---I 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183
           I+      V  +++F  P +  +  +      LL      +   G     L++
Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGWLIL 221


>gi|254785262|ref|YP_003072690.1| MSHA biogenesis protein, MshG [Teredinibacter turnerae T7901]
 gi|237684077|gb|ACR11341.1| MSHA biogenesis protein, MshG [Teredinibacter turnerae T7901]
          Length = 409

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/163 (11%), Positives = 48/163 (29%), Gaps = 9/163 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMV 73
           D       +    +AG+P++  +  +          E    V E    G+SLS ++ +  
Sbjct: 68  DLVMFCRQMYTVTKAGIPLTRGIRGLAASVRHEHFREVLNDVAEKLETGMSLSRAMRQHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           +             +    +  G L E    +   L   +  + +V++         +++
Sbjct: 128 K-----VFDSLFVSMINVGESSGKLDEIFRQIGFYLERDEETRKRVKSAMRYPS---FVV 179

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            +L      +  +  P +  +         ++           
Sbjct: 180 VALVIAFVVINIYVIPPFAKMFSKFGAELPIVTRGLIATSNAF 222



 Score = 36.3 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/127 (7%), Positives = 38/127 (29%), Gaps = 5/127 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
                 + AG+P++ ++++      +P  S   + I        +    + +  ++  + 
Sbjct: 277 RSFSLMLSAGVPITQSLSLCAAAIDNPFLSAKIQQIRQ-----GVERGETLLRTHLQAEL 331

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
            +     +    +  G +   L +++       +   K     +E      +   +    
Sbjct: 332 FTPLVLQMISVGEESGQVDNLLRDVAEFYEREVDYDLKTLTDRIEPLLIIVLAVFVTLLA 391

Query: 141 STLVYFT 147
             +    
Sbjct: 392 LGIFLPL 398


>gi|89902130|ref|YP_524601.1| type II secretion system protein [Rhodoferax ferrireducens T118]
 gi|89346867|gb|ABD71070.1| type II secretion system protein [Rhodoferax ferrireducens T118]
          Length = 412

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/171 (11%), Positives = 54/171 (31%), Gaps = 6/171 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLS 66
           R    ++D       +    +AG+P+  A A +    +   +    + +  +   G  LS
Sbjct: 62  RKPVVVEDILVFSRQMYTLNKAGVPILRAFAGLEASATKPAMVDMLKDIRASLDQGRELS 121

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +++R            F   +    ++ G L+E    L+  L   ++++ +++      
Sbjct: 122 AAMAR-----HQDVFGAFYISMIRVGEMTGRLTEVFLRLNEHLEFERDVRERIKQAMRYP 176

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
                 +      ++  V             +        +A +  ++   
Sbjct: 177 IFVLIAMAIAVVILNIFVIPVFANVFAGFHAELPLITRGLLAFSAWMLAWW 227


>gi|16128099|ref|NP_414648.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli str. K-12 substr. MG1655]
 gi|89106987|ref|AP_000767.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli str. K-12 substr. W3110]
 gi|170021540|ref|YP_001726494.1| type IV pilin biogenesis protein [Escherichia coli ATCC 8739]
 gi|170079743|ref|YP_001729063.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238899505|ref|YP_002925301.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli BW2952]
 gi|253774866|ref|YP_003037697.1| type IV pilin biogenesis protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254037520|ref|ZP_04871597.1| type II secretion system protein [Escherichia sp. 1_1_43]
 gi|254160226|ref|YP_003043334.1| type IV pilin biogenesis protein [Escherichia coli B str. REL606]
 gi|256025418|ref|ZP_05439283.1| type IV pilin biogenesis protein [Escherichia sp. 4_1_40B]
 gi|297517077|ref|ZP_06935463.1| type IV pilin biogenesis protein [Escherichia coli OP50]
 gi|300949875|ref|ZP_07163840.1| type II secretion system F domain protein [Escherichia coli MS
           116-1]
 gi|300955970|ref|ZP_07168303.1| type II secretion system F domain protein [Escherichia coli MS
           175-1]
 gi|301646418|ref|ZP_07246300.1| type II secretion system F domain protein [Escherichia coli MS
           146-1]
 gi|307136705|ref|ZP_07496061.1| type IV pilin biogenesis protein [Escherichia coli H736]
 gi|331640557|ref|ZP_08341705.1| protein transport protein HofC [Escherichia coli H736]
 gi|2506494|sp|P36646|HOFC_ECOLI RecName: Full=Protein transport protein hofC
 gi|1786295|gb|AAC73217.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli str. K-12 substr. MG1655]
 gi|85674330|dbj|BAB96674.2| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli str. K12 substr. W3110]
 gi|169756468|gb|ACA79167.1| type II secretion system protein [Escherichia coli ATCC 8739]
 gi|169887578|gb|ACB01285.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli str. K-12 substr. DH10B]
 gi|226840626|gb|EEH72628.1| type II secretion system protein [Escherichia sp. 1_1_43]
 gi|238860031|gb|ACR62029.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli BW2952]
 gi|242375940|emb|CAQ30621.1| protein transport protein HofC [Escherichia coli BL21(DE3)]
 gi|253325910|gb|ACT30512.1| type II secretion system protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972127|gb|ACT37798.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli B str. REL606]
 gi|253976336|gb|ACT42006.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli BL21(DE3)]
 gi|260450689|gb|ACX41111.1| type II secretion system protein [Escherichia coli DH1]
 gi|300317190|gb|EFJ66974.1| type II secretion system F domain protein [Escherichia coli MS
           175-1]
 gi|300450753|gb|EFK14373.1| type II secretion system F domain protein [Escherichia coli MS
           116-1]
 gi|301075388|gb|EFK90194.1| type II secretion system F domain protein [Escherichia coli MS
           146-1]
 gi|309700315|emb|CBI99603.1| protein transport protein HofC [Escherichia coli ETEC H10407]
 gi|315134797|dbj|BAJ41956.1| type IV pilin biogenesis protein [Escherichia coli DH1]
 gi|315616117|gb|EFU96736.1| bacterial type II secretion system F domain protein [Escherichia
           coli 3431]
 gi|323939856|gb|EGB36056.1| type II secretion system protein F [Escherichia coli E482]
 gi|323960050|gb|EGB55696.1| type II secretion system protein F [Escherichia coli H489]
 gi|323970776|gb|EGB66030.1| type II secretion system protein F [Escherichia coli TA007]
 gi|331040303|gb|EGI12510.1| protein transport protein HofC [Escherichia coli H736]
 gi|332341436|gb|AEE54770.1| type IV pilus assembly protein PilC [Escherichia coli UMNK88]
          Length = 400

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/182 (11%), Positives = 54/182 (29%), Gaps = 22/182 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +     +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLM 235

Query: 180 RL 181
           R 
Sbjct: 236 RR 237


>gi|331002545|ref|ZP_08326062.1| hypothetical protein HMPREF0491_00924 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330409148|gb|EGG88604.1| hypothetical protein HMPREF0491_00924 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 266

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 70/179 (39%), Gaps = 8/179 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIETQHLGLSLSES 68
           +F + L+ +  S  +G    +A A               + +E R +I      + + + 
Sbjct: 90  EFRDLLEALTTSYSSGKNTMEAFAESYQDLLSLYGEKSDIVNETRIIIAGMTNNIIIEDL 149

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           +    +   L +V  F++      + GG++ + + +  +I+ D+  ++ +++ +  E + 
Sbjct: 150 LKDFAKRCGLDDVESFASTFESGLRQGGDIKQVVWDSRKIINDKIEIEMEIKTMLTEKEN 209

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
              I+  +P  +   +     G M+   N     M+     A      ++ R ++N  +
Sbjct: 210 ELNIMMVMPLVIMITLSGM--GTMSAAANTAFSVMVKIFVIALFAGAYIMGRKIVNIRI 266


>gi|255657468|ref|ZP_05402877.1| type IV pilus assembly protein [Clostridium difficile QCD-23m63]
 gi|296449063|ref|ZP_06890853.1| type IV pilus assembly protein [Clostridium difficile NAP08]
 gi|296879886|ref|ZP_06903859.1| type IV pilus assembly protein [Clostridium difficile NAP07]
 gi|296262156|gb|EFH08961.1| type IV pilus assembly protein [Clostridium difficile NAP08]
 gi|296429175|gb|EFH15049.1| type IV pilus assembly protein [Clostridium difficile NAP07]
          Length = 402

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/187 (10%), Positives = 61/187 (32%), Gaps = 7/187 (3%)

Query: 1   MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIET 58
           ++   +KR      D   +        V +G+     +  +  +S++  +R E  R++  
Sbjct: 50  IRLSSRKRKKDLGADQISHFCRQFAIIVSSGINSISGLETLARRSTNITLREEINRIVAE 109

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +G ++++S+       P          +    +  G L E L +++        +K K
Sbjct: 110 IKVGSTIADSMLSSKSKFPK-----LLGAMVATGEATGKLDEVLKSMASFYASEHRVKQK 164

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           ++  +            + F  +  +       +  +         + +     +    +
Sbjct: 165 LRNAATYPLIVLISSFIMIFIFTAFMVPKMINSITTVGATLPLITRIVMGFGMFMKKFWI 224

Query: 179 MRLMINF 185
           + L++  
Sbjct: 225 IVLLVII 231


>gi|238911200|ref|ZP_04655037.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 400

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q          R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAQQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P          +    +L G L+E    L+R  + ++ +   V+           
Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPA---I 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183
           I+      V  +++F  P +  +  +      LL      +   G     L++
Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGAAWGWLIL 221


>gi|215488286|ref|YP_002330717.1| putative type II secretion protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312968708|ref|ZP_07782917.1| general secretion pathway protein F [Escherichia coli 2362-75]
 gi|331648752|ref|ZP_08349840.1| general secretion pathway protein F [Escherichia coli M605]
 gi|215266358|emb|CAS10795.1| putative type II secretion protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312286926|gb|EFR14837.1| general secretion pathway protein F [Escherichia coli 2362-75]
 gi|323188612|gb|EFZ73897.1| general secretion pathway protein F [Escherichia coli RN587/1]
 gi|330909025|gb|EGH37539.1| general secretion pathway protein E [Escherichia coli AA86]
 gi|331042499|gb|EGI14641.1| general secretion pathway protein F [Escherichia coli M605]
          Length = 407

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +       ML+ ++      G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDTLQTSGVYW 229


>gi|206559898|ref|YP_002230662.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
 gi|198035939|emb|CAR51831.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
          Length = 332

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 57/158 (36%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           ++     R      + P  +D++      GL +  ++ V+          +  E      
Sbjct: 169 VRRRATARRQSIAAELPLLVDMLRLLQGVGLSLDQSIQVVTHDFQTMLPVLSWELGVAQR 228

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+ R+      +++     ++    + GG + E L      LR+ +    
Sbjct: 229 QFAAGRTREQSLQRLTNSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREGRRATL 288

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + Q   +  K +  +I +L   +  L+    PG M VL
Sbjct: 289 REQIGRLTVKMTGVMIVTLLPAL--LIVTAGPGIMTVL 324


>gi|94496441|ref|ZP_01303018.1| General secretion pathway protein F [Sphingomonas sp. SKA58]
 gi|94424187|gb|EAT09211.1| General secretion pathway protein F [Sphingomonas sp. SKA58]
          Length = 405

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/165 (10%), Positives = 44/165 (26%), Gaps = 5/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            +       +   ++   P+ +++  I  QS           +     G  L        
Sbjct: 66  KELTLFTRQLSTLIQV-SPLEESLRTIGRQSEQDHVRAIVGTVH----GGVLEGRRLADA 120

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +        +    +  G+L   +  LS ++  +  M++KV          A   
Sbjct: 121 LGAEPRSFPPLYRAMISAGESSGSLPTIMERLSDLMERQALMRSKVLTAIAYPSVLATFA 180

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             +   +   V        + +  +      + +  +  L G   
Sbjct: 181 VCVVAALMIFVVPKVVEQFDTVGQELPLLTRMVMGLSAFLAGYWW 225


>gi|254458997|ref|ZP_05072420.1| type II secretion system protein [Campylobacterales bacterium GD 1]
 gi|207084268|gb|EDZ61557.1| type II secretion system protein [Campylobacterales bacterium GD 1]
          Length = 414

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 71/181 (39%), Gaps = 9/181 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGL 63
           IKKR  K  D    A+  +     AG+ + D+++ I   + D  ++  F R+ +  + G 
Sbjct: 64  IKKRKIK-PDALIAAVRQLAVMTNAGISIHDSLSEIAASTDDQALKHVFGRLADDINAGH 122

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           +LS S+          E+   S  +    +  GNL EAL +L+ +L + +    K +   
Sbjct: 123 ALSSSMENF-----RFELGNLSIAMVQLGEKTGNLDEALYSLADMLEEIRANIIKFKKAM 177

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP--RGHMLLGVAAAFMLIGIMVMRL 181
              +     +      + + V          L  +      +LL +   F   G+ V+ +
Sbjct: 178 AYPRNVMIAMAIAFTILISYVVPQFKDIFESLNAELPMPTQILLTLEHLFNNYGLYVLAI 237

Query: 182 M 182
           +
Sbjct: 238 L 238


>gi|91774435|ref|YP_544191.1| type II secretion system protein [Methylobacillus flagellatus KT]
 gi|91708422|gb|ABE48350.1| type II secretion system protein [Methylobacillus flagellatus KT]
          Length = 401

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/173 (9%), Positives = 60/173 (34%), Gaps = 6/173 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLS 66
           R+   L D       + +   AG+P+ + +  +   + +   +     ++ +   G  LS
Sbjct: 54  RSKVSLQDLVIFCFQLEQLTSAGVPLLEGLVDLRDSTTNPHFQKIIGSLVSSVEGGKMLS 113

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++++           +     +    +  G L E   +L+  L+ +  + ++ + L    
Sbjct: 114 QALAEYP-----YVFNRVFVSLIKAGEQTGRLPEIFRHLADTLKWQDELISQTRKLLAYP 168

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
                ++ +    +   +      ++  +         + +A +  ++G   +
Sbjct: 169 TFVLVVVVAAVIFLMAYLVPQMVSFLGNIGQALPLQTRILIAVSNAVVGYWWL 221


>gi|312970200|ref|ZP_07784382.1| bacterial type II secretion system F domain protein [Escherichia
           coli 1827-70]
 gi|310337698|gb|EFQ02809.1| bacterial type II secretion system F domain protein [Escherichia
           coli 1827-70]
          Length = 400

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/182 (11%), Positives = 54/182 (29%), Gaps = 22/182 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +     +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLM 235

Query: 180 RL 181
           R 
Sbjct: 236 RR 237


>gi|110643198|ref|YP_670928.1| type II secretion protein GspF [Escherichia coli 536]
 gi|47155033|emb|CAE85232.1| GspF, hypothetical type II secretion protein [Escherichia coli]
 gi|110344790|gb|ABG71027.1| hypothetical type II secretion protein GspF [Escherichia coli 536]
          Length = 407

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +       ML+ ++      G+  
Sbjct: 183 TGVVTILLTAVVPEIIEQFDHLGHALPASTRMLIAMSDTLQTSGVYW 229


>gi|260221534|emb|CBA30195.1| hypothetical protein Csp_C22330 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 414

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/165 (10%), Positives = 53/165 (32%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
           +D       +    +AG+P+  A A +    +   +    + V  +   G  LS +++R 
Sbjct: 70  EDLLIFSRQMYTLNKAGVPILRAFAGLEASATKPAMVELLKDVRSSLDQGRELSAALARH 129

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                      F   +    ++ G L+E    L+  +   ++++ +++            
Sbjct: 130 SALFGN-----FYIAMIRVGEMTGRLTEVFLRLNEHMEFERDVRERIKQAMRYPSFVMIA 184

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           + +    ++  V            ++        +  +  +I   
Sbjct: 185 MAAAIVILNIFVIPVFAKVFAGFNSELPLITRGLLGFSNWMINWW 229


>gi|282163998|ref|YP_003356383.1| putative type II secretion system protein [Methanocella paludicola
           SANAE]
 gi|282156312|dbj|BAI61400.1| putative bacterial type II secretion system protein [Methanocella
           paludicola SANAE]
          Length = 678

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 59/150 (39%), Gaps = 3/150 (2%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  K   + P+ L  +  +   G+ ++ ++A+I   +   + SE +++      G+ ++
Sbjct: 453 RRERKISAEMPDFLKKLASTNETGMTLTQSIALISNDNFGTISSEVKKINRNIQWGIDVN 512

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++      +         T+I+  S+  G++ + L   +   +  + ++ +     +  
Sbjct: 513 TALKMFGNSLNTALSQRVITLITKASESSGDIRDVLNVAANDAKMGERIRRERSDGML-- 570

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
                II          VY  S  ++ V+ 
Sbjct: 571 -IYVAIIFITFCVFIYCVYTLSSSFIPVMY 599



 Score = 48.2 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/182 (11%), Positives = 58/182 (31%), Gaps = 4/182 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQHLG 62
              R +K     P A+  +    + G+ +   +  +     +   +  E   +I      
Sbjct: 126 ASDRKSKINKQIPYAVTFMYALSKGGMDIIGILRALNSAESTYGDISREIGIIIRDMDYF 185

Query: 63  L-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
              L  +I           +    T +      GG++++ L   +   + R     K   
Sbjct: 186 GSDLRTAIINCTNQTSSDLLQDLLTNLLSVIDSGGDVTQYLYGKTDQYQQRLLQDQKSFL 245

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
             +   A +++   +   +  ++  +    MN   ++   ++++        +   +M  
Sbjct: 246 EILGLIAESYVTALVAAPLFIIIMQSVMTIMNG-GSNILLYIIIYAMVPIGSVAFTIMIS 304

Query: 182 MI 183
           MI
Sbjct: 305 MI 306


>gi|204927253|ref|ZP_03218455.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204323918|gb|EDZ09113.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 400

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q          R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P          +    +L G L++    L+R  + ++ +   V+           
Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLADCCFELARQQKAQRQITVSVKKALRYPA---I 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183
           I+      V  +++F  P +  +  +      LL      +   G     L++
Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGWLIL 221


>gi|331684605|ref|ZP_08385197.1| general secretion pathway protein F [Escherichia coli H299]
 gi|331078220|gb|EGI49426.1| general secretion pathway protein F [Escherichia coli H299]
          Length = 407

 Score = 58.6 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +       ML+ ++      G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDTLQTSGVYW 229


>gi|221195413|ref|ZP_03568468.1| putative type II secretion system protein [Atopobium rimae ATCC
           49626]
 gi|221184600|gb|EEE16992.1| putative type II secretion system protein [Atopobium rimae ATCC
           49626]
          Length = 248

 Score = 58.6 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 57/145 (39%), Gaps = 1/145 (0%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +  I  +    + + P  LD++   + +GL    ++ +   + S  +  +  + + +  +
Sbjct: 93  RKRIAHQRNAIIKEMPRMLDVLTLGLSSGLSFDSSLDLYCNRCSGVLSEKMSQALLSWQM 152

Query: 62  -GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
              + S ++  +     +  +  F++V++     G  LS++L   +  +RD +    + +
Sbjct: 153 GATTRSTALEEIAAEYGITSLLSFASVVTESLAFGTPLSDSLERQAGTIRDDQRAALEAE 212

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145
              +  K    +   +   +   + 
Sbjct: 213 IEKVPVKMLLPLGTLIVPAMLIAIL 237


>gi|170730041|ref|YP_001775474.1| general secretory pathway protein F [Xylella fastidiosa M12]
 gi|167964834|gb|ACA11844.1| general secretory pathway protein F [Xylella fastidiosa M12]
          Length = 405

 Score = 58.6 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 59/173 (34%), Gaps = 7/173 (4%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVR 74
             +    +V  + AG P+  A++++     +   R     V +    G  LS ++ R   
Sbjct: 68  LIHFTQQLVALLGAGQPLDRALSILTDLPDNEKSRRIIGDVCDIVRGGTPLSIALER--- 124

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                  S     ++   + GGN+ E L  L+  L   + ++AKV    +      +++G
Sbjct: 125 --QHGVFSRLYVTMARAGESGGNMPETLQRLADYLERNQVVRAKVINALIYPVILIFVVG 182

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
                +   V          L +        GV A    IG     L+    +
Sbjct: 183 GALAFLLGYVVPQFGAMYESL-DVALPWFTQGVLALGHFIGDWWFLLLAVIGI 234


>gi|253997795|ref|YP_003049858.1| type II secretion system protein [Methylovorus sp. SIP3-4]
 gi|313199859|ref|YP_004038517.1| type II secretion system protein [Methylovorus sp. MP688]
 gi|253984474|gb|ACT49331.1| type II secretion system protein [Methylovorus sp. SIP3-4]
 gi|312439175|gb|ADQ83281.1| type II secretion system protein [Methylovorus sp. MP688]
          Length = 401

 Score = 58.6 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/174 (10%), Positives = 60/174 (34%), Gaps = 6/174 (3%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSL 65
           KR+   L D       + +   +G+P+ + +A +   +++   +     V      G  L
Sbjct: 53  KRSHVSLQDLMMFCFQLEQLTSSGVPLLEGLADLRDSTTNLHFQKIIGAVTSEVEGGKLL 112

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S++++   +       +     +    +  G L E   NL+   + +  + ++ + L   
Sbjct: 113 SQALAEHPK-----VFNPLFVSLVQAGEQTGRLPEVFDNLANTFKWQDELLSQTRRLLAY 167

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
                 ++ S    +   +     G++  +  +      + +  +   +    +
Sbjct: 168 PLFIMVMVLSAVVFLMIYLVPKMVGFLRNMGQELPLQTKVLIFLSNAFVNYWWL 221



 Score = 35.9 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 38/137 (27%), Gaps = 7/137 (5%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVR 74
                       + G+P+ DA+        +  V     R     + G S+SES      
Sbjct: 266 LARFARYFALMYQTGIPILDAIKTSENIVDNRAVADALTRAHHQINAGESMSESFRNAGL 325

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                        +    +  G L  AL  +S           +     +E   +  +  
Sbjct: 326 ------FPALVVRMIKVGESTGALDVALLKISYFYDRDVRESIEKMLKMLEPALTVILGA 379

Query: 135 SLPFCVSTLVYFTSPGY 151
            + F + +++      +
Sbjct: 380 IMAFIMFSVLGPVYDSF 396


>gi|300923113|ref|ZP_07139173.1| type II secretion system F domain protein [Escherichia coli MS
           182-1]
 gi|301330114|ref|ZP_07222783.1| type II secretion system F domain protein [Escherichia coli MS
           78-1]
 gi|300420568|gb|EFK03879.1| type II secretion system F domain protein [Escherichia coli MS
           182-1]
 gi|300843861|gb|EFK71621.1| type II secretion system F domain protein [Escherichia coli MS
           78-1]
 gi|323945733|gb|EGB41781.1| bacterial type II secretion system protein F containing protein
           [Escherichia coli H120]
          Length = 400

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/182 (11%), Positives = 54/182 (29%), Gaps = 22/182 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +     +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLM 235

Query: 180 RL 181
           R 
Sbjct: 236 RR 237


>gi|331651002|ref|ZP_08352030.1| protein transport protein HofC [Escherichia coli M718]
 gi|331051456|gb|EGI23505.1| protein transport protein HofC [Escherichia coli M718]
          Length = 400

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/182 (11%), Positives = 54/182 (29%), Gaps = 22/182 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +     +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGIMLTIANKLLM 235

Query: 180 RL 181
           R 
Sbjct: 236 RR 237


>gi|300867503|ref|ZP_07112154.1| type II secretion system protein [Oscillatoria sp. PCC 6506]
 gi|300334497|emb|CBN57322.1| type II secretion system protein [Oscillatoria sp. PCC 6506]
          Length = 375

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 55/164 (33%), Gaps = 6/164 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D             AG+ +   +AV+  Q S+  +++    +      G  LS ++ + 
Sbjct: 33  KDLAIFARQFAAMFNAGVAMVRCLAVLNEQCSNPKLKNALTSISADVEQGSELSTAMRKF 92

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    ++GG L E L  L+ ++      ++++++     K   +I
Sbjct: 93  PD-----VFDQLFLSMVGAGEVGGVLDEVLERLAVLMEKNHKTQSEIKSAMSYPKTVLFI 147

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
              + F ++  +  T       +  D     L  ++ +      
Sbjct: 148 AIIIFFAMTIFLLPTFAKIFKDIGADLPAFTLFMLSISAFCTTW 191


>gi|119477883|ref|ZP_01618006.1| general secretion pathway protein F [marine gamma proteobacterium
           HTCC2143]
 gi|119449044|gb|EAW30285.1| general secretion pathway protein F [marine gamma proteobacterium
           HTCC2143]
          Length = 408

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/179 (12%), Positives = 62/179 (34%), Gaps = 12/179 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISR 71
                     I   V++ +P+ +A+     Q+    ++S   +V      G +L+ ++  
Sbjct: 68  QSQLTLITRQIATLVQSNVPLDEALTATAQQAKQSRIKSLMLQVRARVLEGHTLAYALGD 127

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +       +     +    +  G L   L  L+    + ++ + K++   +       
Sbjct: 128 FPQ-----VFNEMYCAMVKAGEHAGFLGTVLEQLADYTENSQHTQQKMKGAMIYPL---V 179

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL---GVAAAFMLIGIMVMRLMINFDV 187
           +I      +S L+ F  P  + +     +   +L    +A++        + L++   +
Sbjct: 180 LIVLSVAVISILMVFVVPDLVGMFNRSDQELPMLTQIVIASSDFFAEKWWLVLLVFIAI 238


>gi|256024454|ref|ZP_05438319.1| General secretion pathway protein F [Escherichia sp. 4_1_40B]
          Length = 407

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 54/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA--FMLIGIMV 178
             +   + T V        + L +       + +A +      G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDMLQTSGVYW 229


>gi|70732597|ref|YP_262360.1| type IV pilus biogenesis protein PilC [Pseudomonas fluorescens
           Pf-5]
 gi|68346896|gb|AAY94502.1| type IV pilus biogenesis protein PilC [Pseudomonas fluorescens
           Pf-5]
          Length = 405

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 53/154 (34%), Gaps = 9/154 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   ++AG+P+  +  +I        +R     +      G SL+ ++ R 
Sbjct: 66  RDIALLTRQLATLMQAGVPLLQSFDIIAESFEHLQMRQLLASLKRDIEAGSSLAAALRRQ 125

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R+            +    +  G L   L  ++      +N+KA+++   +   A   +
Sbjct: 126 PRHFDP-----LYCNLVDAGEQAGALDTLLERVATYKEKSENLKARLKKAMVYPLA---V 177

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
           IG      S L+    P + ++         LL 
Sbjct: 178 IGVAVVVSSILLLKVVPQFQSLFAGFNAELPLLT 211



 Score = 37.0 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 40/129 (31%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +  +  AG+P+  A+  + G   +   R   +R+ +    G+ L+ ++          
Sbjct: 277 RTLATTFAAGVPLVQALDSVAGASGNPVFRQAVQRIRQQVAAGMQLNFAMRASG------ 330

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +  ++   +  G L   L  ++       +         ME      + G +   
Sbjct: 331 VFPTMAIQMTAIGEESGTLDHLLEKVAIHYEVEVDNLVDSLTSLMEPLIMVVLGGIVGAL 390

Query: 140 VSTLVYFTS 148
           V  +     
Sbjct: 391 VVAMYLPIF 399


>gi|18311267|ref|NP_563201.1| type II secretion system protein F [Clostridium perfringens str.
           13]
 gi|18145950|dbj|BAB81991.1| probable pilin biogenesis protein [Clostridium perfringens str. 13]
          Length = 401

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 51/157 (32%), Gaps = 9/157 (5%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSE 67
               L D           + +GL +  A+ +++ Q   P   E    V      G +L+ 
Sbjct: 57  RKVKLKDIAIFCRQFYVMLDSGLSIGKALNILIEQGEKPKIREALIGVNGDLKRGETLAN 116

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           S+ +              T +    +  GNL   L  ++        ++ K+++  +   
Sbjct: 117 SMRK-----RKDVFPNLLTSMIDAGERSGNLDIILKRMAEYYEKETKIRGKIKSAMIYPI 171

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
               +       ++ ++ F  P ++ +   +     +
Sbjct: 172 ---VLGVVAIIAITFILTFVMPTFVQMFEENNVDLPM 205



 Score = 38.6 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/134 (11%), Positives = 43/134 (32%), Gaps = 7/134 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77
               +     +G+ +  ++ ++     + +   E  +V E    G  L +SI      M 
Sbjct: 270 FTRTMGIVSSSGMSLVTSLEIVASVVGNKIAEKELLKVKEKVLKGEGLGDSI------MK 323

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           ++        +    +  G+L   L   +    D    + +     +E      +   + 
Sbjct: 324 IKIFPPMLASMVKVGEEAGSLDSILDKTADFYDDELEREIQTATALIEPAMIVVMGIIIG 383

Query: 138 FCVSTLVYFTSPGY 151
           F + +++      Y
Sbjct: 384 FLLISILTPMFKMY 397


>gi|149911029|ref|ZP_01899658.1| MSHA biogenesis protein MshG [Moritella sp. PE36]
 gi|149805932|gb|EDM65918.1| MSHA biogenesis protein MshG [Moritella sp. PE36]
          Length = 405

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/165 (12%), Positives = 51/165 (30%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            +       +    RAG+P+  A+  +    S   ++     V+   + G +LS S++  
Sbjct: 65  AELVIFARQMYSLTRAGIPMIRAIKGLSESSSHAKLKDVLNDVVVRLNSGNTLSASMAAH 124

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    +     I    +  G L ++   ++  L    + + ++ +           
Sbjct: 125 P-----HVFASIFVSIVRVGENTGRLDDSFLQIANYLELEMDTRRRIASAVRYPIFVLIA 179

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           I      ++  V  T     N    +        +A++   +   
Sbjct: 180 ITGAMVILNIFVIPTFANMFNKFGVELPWATRTLLASSAFFVNYW 224



 Score = 37.0 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/133 (8%), Positives = 38/133 (28%), Gaps = 7/133 (5%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVR 74
                      +R G+P++++++++     +         +      G SL+ + S    
Sbjct: 270 LSRFARSFSLMLRGGVPLNNSLSLVASTVDNAWMEVRILGMRAGIEEGKSLTITASESGM 329

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           + P          +       G + + L   ++      + + +     +E      +  
Sbjct: 330 FTP------LILQMISVGDETGQVDDLLLEAAQFYEREVDYELQSLTAKIEPILIGIVAI 383

Query: 135 SLPFCVSTLVYFT 147
            +      +    
Sbjct: 384 MVLILALGIFVPM 396


>gi|153215376|ref|ZP_01949974.1| MSHA biogenesis protein MshG [Vibrio cholerae 1587]
 gi|124114747|gb|EAY33567.1| MSHA biogenesis protein MshG [Vibrio cholerae 1587]
          Length = 407

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/165 (9%), Positives = 43/165 (26%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72
           +        +    +AG+P+  ++  +     +         V      G +LS      
Sbjct: 67  EVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS-----A 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +     S     +    +  G L +AL  L+         + +++            
Sbjct: 122 SMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITF 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +    F ++  V        +    D      + +  +   +   
Sbjct: 182 VLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYW 226



 Score = 40.9 bits (94), Expect = 0.083,   Method: Composition-based stats.
 Identities = 10/135 (7%), Positives = 35/135 (25%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         + AG+P++ ++A+      +    +         +   +   ++  
Sbjct: 269 RAQLSRFARTFSLMLSAGVPLNQSLALSAEAIDNKFLEQRIL-----EMKSQIESGVAVS 323

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +     +     +    +  G + E L  +S       +   K     +E     ++
Sbjct: 324 ATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLVFV 383

Query: 133 IGSLPFCVSTLVYFT 147
              +      +    
Sbjct: 384 AAMVLVLALGIFLPM 398


>gi|222053995|ref|YP_002536357.1| general secretion pathway protein F [Geobacter sp. FRC-32]
 gi|221563284|gb|ACM19256.1| general secretion pathway protein F [Geobacter sp. FRC-32]
          Length = 403

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 57/164 (34%), Gaps = 9/164 (5%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLS 66
           R    L +       +   + + +PV +A+A +  Q     +R+   RV +    G SL+
Sbjct: 58  RKKVGLPELSLMTRRLATLLGSSVPVYEAIATLHDQERPGELRTMLGRVRDRLAEGTSLA 117

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++++   +       S     +    +  G L   L  L+  L D+  +++K+       
Sbjct: 118 KALAAEPQI-----FSDSYIGMVSAGEASGALEVVLERLAEFLEDQNAVRSKIVTSLAYP 172

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
                +       +  L+ F  P  + V         L+ V   
Sbjct: 173 ILMVVVGTG---VMLFLLAFVVPKIVTVFEQSKAALPLITVILI 213


>gi|254491934|ref|ZP_05105113.1| Bacterial type II secretion system protein F domain [Methylophaga
           thiooxidans DMS010]
 gi|224463412|gb|EEF79682.1| Bacterial type II secretion system protein F domain [Methylophaga
           thiooxydans DMS010]
          Length = 402

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 51/142 (35%), Gaps = 6/142 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISR 71
            D        +   +RAGLP+++ + +   Q SS  +    +++      G SLS ++ +
Sbjct: 66  TDALIFFYRQMAFMLRAGLPLAECLQLAATQVSSPRLHLALKKMHRDIEAGQSLSSALGK 125

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P       +  + V  +  G L   +  L+  L  +  ++ ++    +       
Sbjct: 126 HPDVFPD-----ITINLVVAGESTGELDLIMERLAVHLEKKSQLRKQMINAMIYPVVVVL 180

Query: 132 IIGSLPFCVSTLVYFTSPGYMN 153
               +   + T++      ++ 
Sbjct: 181 AALGVAVFMVTMIIPKFAQFIQ 202


>gi|190574658|ref|YP_001972503.1| putative general secretion pathway protein F [Stenotrophomonas
           maltophilia K279a]
 gi|190012580|emb|CAQ46208.1| putative general secretion pathway protein F [Stenotrophomonas
           maltophilia K279a]
          Length = 399

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 61/176 (34%), Gaps = 8/176 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           +   A   +   + A LP+  A++ ++ Q+    V      V      G  L+ +++   
Sbjct: 61  ELAWATRQLASLLAASLPLEGALSAVIEQAERPHVAQALTAVRADVRAGQRLTVALAARP 120

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R  P          +    +  G+L+  +  L+  + +R  ++AKV    +   A + + 
Sbjct: 121 RDFPP-----IYRALVGAGEDSGDLARVMERLADYIEERNALQAKVLTAFIYPAAISLVS 175

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMINFDV 187
            ++   + + V                    ++L  +A     G+ V   +    V
Sbjct: 176 VAIVIFLLSYVVPQVVTAFVQARQTLPMLTQVMLAASAFVRSWGVWVGLGIAALVV 231



 Score = 37.8 bits (86), Expect = 0.75,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 38/130 (29%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+P+  A+        +  +      V      G +L  ++        
Sbjct: 268 FASTLAILLDAGVPLLRALEAARQTLGNALLARCADDVSARVREGAALGAALKV------ 321

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +        +    +  G+L+  L   ++ +      +A      +E      + G + 
Sbjct: 322 QKVYPPILVHLVASGEKTGSLAPLLDRAAQTISREIERRAMALTALLEPTMILVMGGVVL 381

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 382 TIVLAVLMPI 391


>gi|3025702|gb|AAC12717.1| pilus assembly protein PilC [Legionella pneumophila 130b]
          Length = 406

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 57/187 (30%), Gaps = 14/187 (7%)

Query: 2   KHLIKKRTAKFLD--------DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEF 52
             +IKKR   F          D       +   + +G+P+  A  ++   QS+  ++   
Sbjct: 47  NKVIKKRKPLFDRKNKKITQADITVFSRQLATMIESGIPLVQAFDIVAKGQSNKRLKDLI 106

Query: 53  RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112
             +      GL+L+ES+ +          +     +    +  G+L   L  ++      
Sbjct: 107 ETIKHDIETGLTLAESLIKHPL-----YFNELFCNLVDAGEKSGSLDIMLDKVATYKEKI 161

Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
           + +K K++       A   +   +   +   V             D        +  +  
Sbjct: 162 EIIKKKIKKALTYPIAVMVVALLVTAGLLIYVVPQFESLFKGFGADLPAMTRAVITMSEF 221

Query: 173 LIGIMVM 179
           +     +
Sbjct: 222 MQAYWYI 228



 Score = 38.9 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/135 (9%), Positives = 38/135 (28%), Gaps = 5/135 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                    +  +  AGLP+ +A+  + G + + + ++    I  +              
Sbjct: 271 AAIARFARTLSITFAAGLPLVEALKSVAGATGNIIYAKATDKIREEVATG-----QQMFT 325

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G L + L+ ++    +  N      +  +E    + + 
Sbjct: 326 AIENTHLFPNMVIQMVAIGEESGALEKMLSKVADFYEEEVNNAVDALSSLLEPIIMSILG 385

Query: 134 GSLPFCVSTLVYFTS 148
             +   V  +     
Sbjct: 386 ILVGGLVVGMYLHIF 400


>gi|145596965|ref|YP_001161262.1| type II secretion system protein [Salinispora tropica CNB-440]
 gi|145306302|gb|ABP56884.1| type II secretion system protein [Salinispora tropica CNB-440]
          Length = 300

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/180 (10%), Positives = 56/180 (31%), Gaps = 3/180 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             ++R    ++        +      G  +  A+   V  + + ++ E R +      G 
Sbjct: 103 RAEQRAIGRIEAVGEWTRRLKDISATGQGLQAAITGTVATAPEEIQEEVRLLAARLQAGW 162

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQS-QLGGNLSEALANLSRILRDRKNMKAKVQAL 122
               ++      +           + +     G  L + L +++         + +++A 
Sbjct: 163 LARPALLAFADEIADPVCDQVVAALILHLTDRGERLGDVLGSIASAASAEVATRREIEAK 222

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
             + + +   +  +   V       +  Y+      P G  ++ V     ++ +  +R M
Sbjct: 223 RTQPRFAVRFLTGMTLAVLAY-GLLNTDYIRP-YGTPTGQFVMAVLGVAFVVLLAWVRAM 280


>gi|323496096|ref|ZP_08101156.1| MSHA biogenesis protein MshG [Vibrio sinaloensis DSM 21326]
 gi|323318840|gb|EGA71791.1| MSHA biogenesis protein MshG [Vibrio sinaloensis DSM 21326]
          Length = 406

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/168 (11%), Positives = 51/168 (30%), Gaps = 6/168 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
           +        +    +AG+P+  ++  +    ++  +++    V +    G SL+      
Sbjct: 66  EALVIFCRQLYSLTKAGVPLLRSMKGLSTNCANKQLQTALEEVTQELTNGRSLAG----- 120

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              M  +  S     +    +  G L +AL  L+         + +++            
Sbjct: 121 SMQMHSKVFSQLFVSMINVGENTGRLDQALLQLANYYEQEVETRKRIKTAMRYPTFVISF 180

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           I    F ++  V        N    D      + +  +   +   ++ 
Sbjct: 181 IVVALFILNVKVIPQFATMFNRFGVDLPLPTRILINTSDFFVNYWLVM 228



 Score = 42.8 bits (99), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/135 (8%), Positives = 35/135 (25%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         ++AG+P++ ++A+      +              +  S+    +  
Sbjct: 268 RAQLSRFSRTFALMLKAGVPLNQSLALAAEALGNRFLE-----NRLLEMKASIEAGGTIS 322

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +     +     +    +  G + E L  ++       +   K     +E      +
Sbjct: 323 ATAINSGIFTPLVIQMISVGEETGRIDELLLEVADFYDREVDYDLKTLTARIEPILLLIV 382

Query: 133 IGSLPFCVSTLVYFT 147
            G +      +    
Sbjct: 383 AGMVLILALGIFLPM 397


>gi|300919660|ref|ZP_07136151.1| type II secretion system F domain protein [Escherichia coli MS
           115-1]
 gi|300413300|gb|EFJ96610.1| type II secretion system F domain protein [Escherichia coli MS
           115-1]
          Length = 400

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/182 (11%), Positives = 54/182 (29%), Gaps = 22/182 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYRAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +     +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLM 235

Query: 180 RL 181
           R 
Sbjct: 236 RR 237


>gi|126701135|ref|YP_001090032.1| type IV pilus assembly protein [Clostridium difficile 630]
 gi|254977136|ref|ZP_05273608.1| type IV pilus assembly protein [Clostridium difficile QCD-66c26]
 gi|255094465|ref|ZP_05323943.1| type IV pilus assembly protein [Clostridium difficile CIP 107932]
 gi|255102721|ref|ZP_05331698.1| type IV pilus assembly protein [Clostridium difficile QCD-63q42]
 gi|255308542|ref|ZP_05352713.1| type IV pilus assembly protein [Clostridium difficile ATCC 43255]
 gi|255316216|ref|ZP_05357799.1| type IV pilus assembly protein [Clostridium difficile QCD-76w55]
 gi|255518878|ref|ZP_05386554.1| type IV pilus assembly protein [Clostridium difficile QCD-97b34]
 gi|255652057|ref|ZP_05398959.1| type IV pilus assembly protein [Clostridium difficile QCD-37x79]
 gi|260685031|ref|YP_003216316.1| type IV pilus assembly protein [Clostridium difficile CD196]
 gi|260688689|ref|YP_003219823.1| type IV pilus assembly protein [Clostridium difficile R20291]
 gi|306521793|ref|ZP_07408140.1| type IV pilus assembly protein [Clostridium difficile QCD-32g58]
 gi|115252572|emb|CAJ70415.1| putative type IV pilus secretion protein [Clostridium difficile]
 gi|260211194|emb|CBA66676.1| type IV pilus assembly protein [Clostridium difficile CD196]
 gi|260214706|emb|CBE07364.1| type IV pilus assembly protein [Clostridium difficile R20291]
          Length = 402

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/187 (11%), Positives = 62/187 (33%), Gaps = 7/187 (3%)

Query: 1   MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIET 58
           ++   +KR      D   +        V +G+     +  +  +S++  +R E  R++  
Sbjct: 50  IRLSSRKRKKDLGADQISHFCRQFAIIVSSGINSISGLETLARRSTNITLREEINRIVAE 109

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +G ++++S+       P          +    +  G L E L +++        +K K
Sbjct: 110 IKVGSTIADSMLSSKSKFPK-----LLGAMVATGEATGKLDEVLKSMASFYASEHRVKQK 164

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           ++  +            + F  +T +       +  +         + +     +    +
Sbjct: 165 LRNAATYPLIVLISSFIMIFIFTTFMVPKMINSITTVGATLPLITRIVMGFGMFMKKFWI 224

Query: 179 MRLMINF 185
           + L++  
Sbjct: 225 IVLLVII 231


>gi|188495497|ref|ZP_03002767.1| type IV pilus assembly protein PilC [Escherichia coli 53638]
 gi|188490696|gb|EDU65799.1| type IV pilus assembly protein PilC [Escherichia coli 53638]
          Length = 400

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/182 (11%), Positives = 54/182 (29%), Gaps = 22/182 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +     +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLM 235

Query: 180 RL 181
           R 
Sbjct: 236 RR 237


>gi|228982434|ref|ZP_04142693.1| hypothetical protein bthur0002_55670 [Bacillus thuringiensis Bt407]
 gi|228776617|gb|EEM24925.1| hypothetical protein bthur0002_55670 [Bacillus thuringiensis Bt407]
          Length = 314

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 68/185 (36%), Gaps = 4/185 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIET 58
           +  +  +R     +   + ++++V   +A      ++   +        + SE R+ +  
Sbjct: 123 IAFIKNRRLNMIEEQVGSFMNLVVERYKAQNDFPKSIKESLYDFKGQEPMYSEIRQTVLD 182

Query: 59  QHLGLSLSESISRMVRYMPLQEVSF--FSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
             LG+  ++++  + R    + +        I++           L    +   + + MK
Sbjct: 183 IELGIPTTDAMDNLARRTGNKYLERLSNYYQIAMTLGTEDARENLLGEAFQQFEENRKMK 242

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
           + ++         A+I+ +    + +    TS  Y++ ++N   G +   V  A ++  I
Sbjct: 243 STLRKEIAGPVREAYIMVAAIPLLISYQIATSDSYVDFMLNTTPGKIGSTVICAIIMGSI 302

Query: 177 MVMRL 181
             +  
Sbjct: 303 WFINK 307


>gi|157164422|ref|YP_001466823.1| transcription regulator AsnC [Campylobacter concisus 13826]
 gi|112801342|gb|EAT98686.1| type II secretion system protein [Campylobacter concisus 13826]
          Length = 411

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 62/168 (36%), Gaps = 8/168 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           +    +  +     AG+ + D++  +   + D  ++  F+ + E  + G SL+ SI    
Sbjct: 71  NLVATIRQLSVMTNAGISIHDSIKEVANSTEDKRLKFIFQTIDEELNQGSSLTNSIENFK 130

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                 E+   +  +    +  GN+++ALA L+ IL++  + + K +            I
Sbjct: 131 E-----ELGDVTLAMIRLGESTGNMADALAKLASILQEVWDNQQKFKKAIRYPITVICAI 185

Query: 134 GSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVM 179
                 +  LV          L  +      +LL +       G  ++
Sbjct: 186 IIAFVILMILVVPQFREIFEQLNAELPLPTKILLNIEYVMTNYGFYIL 233


>gi|157372482|ref|YP_001480471.1| general secretion pathway protein F [Serratia proteamaculans 568]
 gi|157324246|gb|ABV43343.1| general secretion pathway protein F [Serratia proteamaculans 568]
          Length = 403

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 53/174 (30%), Gaps = 9/174 (5%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLG 62
             ++R      +       +   + A LP+ +A+  +  QS    V     R+      G
Sbjct: 54  AARRRHRLSSGELALVTRQLATLIAAALPLEEALLTVACQSEKKTVIQLITRIRSHVLEG 113

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           LSLS+++ +                +    +  G L      L+  +  R+ +K K+   
Sbjct: 114 LSLSQALMQFP-----SVFDRLFCAMVAAGESSGQLPLIFTELADYVEQRQKIKNKMTQA 168

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
                    +       +  L+    P  +   ++  +   L          G+
Sbjct: 169 MTYPV---ILTLVAIAVIGVLLVAVVPKVIEQFVHMKQTLPLTTQILLLCSEGV 219


>gi|117620490|ref|YP_854922.1| GspF family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117561897|gb|ABK38845.1| GspF family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 406

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 52/168 (30%), Gaps = 6/168 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
           D+       +    RAG+P+  A+A +   +   P++     + E    G  LS S+   
Sbjct: 65  DELVVFSRQMYALTRAGIPILRAIAGLEESAHSKPLKRALHALGEDLGNGRPLSSSMQAH 124

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R       S     I    +  G L EA   L+         + +++            
Sbjct: 125 PR-----VFSSLFVAIIHVGENTGQLEEAFLQLANYFELELETRKRIKTAMRYPSFVLIA 179

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           IG     ++ +V     G       +      + +A +   +    + 
Sbjct: 180 IGIAMVILNIMVIPVFAGMFAKFGVELPLATRILLATSHFFVHYWWVM 227



 Score = 39.7 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 9/132 (6%), Positives = 34/132 (25%), Gaps = 5/132 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                      ++AG+P++ A++++     +            + +   +    S +   
Sbjct: 270 LARFARSFSMMLKAGVPLNTALSLVADAVDNAWM-----AGRIRDMRAGIERGESLLRTA 324

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                 +     +    +  G + + L   +       +   K     +E      +   
Sbjct: 325 GSSGLFTPLVMQMIAVGEETGQVDDLLHEAAEYYEREVDYDLKSLTARIEPILIGIVAVM 384

Query: 136 LPFCVSTLVYFT 147
           +      +    
Sbjct: 385 VLILALGIFTPM 396


>gi|17223828|gb|AAL10695.1| hypothetical type II secretion protein [Escherichia coli ETEC
           H10407]
          Length = 407

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMV 178
             +   + T V        + L +        L+ ++ A    G+  
Sbjct: 183 TGVVTILLTPVVPKIIEQFDHLGHALPVSTRTLIAMSDALQASGVYW 229


>gi|330446777|ref|ZP_08310428.1| bacterial type II secretion system F domain protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328490968|dbj|GAA04925.1| bacterial type II secretion system F domain protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 408

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/171 (9%), Positives = 46/171 (26%), Gaps = 9/171 (5%)

Query: 12  FLDDFPN-----ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           F    P          +    +AG+P+  A   +   ++ P+       +E     L+  
Sbjct: 60  FQAQLPLEILVIFCRQLYSLTKAGVPLLRAFKGLSQSANHPLLK---TTLEEVTQDLTNG 116

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +          +  S     +    +  G L + L  L+         + ++++     
Sbjct: 117 LA-LSASMQQHPRVFSRLFISMIHVGENTGRLDQVLLQLANYYEQEMKTRRQIKSAMRYP 175

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
                 I      ++T V        +    +      + +  +   +   
Sbjct: 176 TFVLTAIVIAMGILNTKVIPQFASMFSRFGVELPWPTRVLIGTSNFFVHYW 226



 Score = 43.2 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/135 (8%), Positives = 31/135 (22%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         +RAG+P++ A+ +      +              +   +    S  
Sbjct: 269 RAQMARFARTFSLMIRAGVPLNQAIQMAAESLGNRFLE-----NRLVEMKQGIESGSSIA 323

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    +     +    +  G + + L  ++           K     +E      +
Sbjct: 324 RTATKSGVFTPLVLQMIAVGEETGQVDDLLLEVADFYDREVEYDLKTLTARIEPIMLVVV 383

Query: 133 IGSLPFCVSTLVYFT 147
            G +      +    
Sbjct: 384 AGMVLLLALGIFLPM 398


>gi|229591511|ref|YP_002873630.1| putative general secretion pathway protein F [Pseudomonas
           fluorescens SBW25]
 gi|229363377|emb|CAY50524.1| putative general secretion pathway protein F [Pseudomonas
           fluorescens SBW25]
          Length = 400

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 62/166 (37%), Gaps = 11/166 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
               +    +   + AG P+  ++ +++ Q      R+   R+ E    G  LS+++   
Sbjct: 62  AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGQPLSKALEEE 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    S     +    + GG L + L  LS  L   + ++ +V    +      ++
Sbjct: 122 GDQ-----FSPLYLSMVRAGEAGGALEDTLRQLSDYLERSQLLRGEVINALIYPA---FL 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +  +   ++ L+ +  P ++ +  +   G  +  +    + +G  +
Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILGLGQFL 217


>gi|254038138|ref|ZP_04872196.1| general secretion pathway protein F [Escherichia sp. 1_1_43]
 gi|226839762|gb|EEH71783.1| general secretion pathway protein F [Escherichia sp. 1_1_43]
          Length = 407

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 54/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLAGYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +        L+ ++      G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDTLQTSGVYW 229


>gi|325264274|ref|ZP_08131005.1| putative bacterial type II secretion system protein F domain
           protein [Clostridium sp. D5]
 gi|324030345|gb|EGB91629.1| putative bacterial type II secretion system protein F domain
           protein [Clostridium sp. D5]
          Length = 410

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 47/156 (30%), Gaps = 9/156 (5%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--------SSDPVRSEFR 53
           K ++  R  +   D+P  +      + AG+ V  A   +  +               E  
Sbjct: 250 KQVLADRKKQLAADYPQLISQFTLFLGAGMSVRRAWFKMAEEYEKRRDRKGPRIAYEEMS 309

Query: 54  RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDR 112
             +     G+S  E   R      L     F  ++S    + G  L+E L   +    + 
Sbjct: 310 YTMHEIQGGVSEGECYERFGSRCGLPAYRRFGALLSQNLRKGGRGLNELLRKEAADAFED 369

Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
           +  +A+        K    +   L   +  +V    
Sbjct: 370 RKKQARKLGEEAGTKLLGPMFLMLAVVLIIIVVPAF 405


>gi|548513|sp|P36641|PILC_PSEPU RecName: Full=Type 4 fimbrial assembly protein pilC
 gi|396264|emb|CAA52333.1| pilin biogenesis protein [Pseudomonas putida]
          Length = 401

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/184 (12%), Positives = 49/184 (26%), Gaps = 21/184 (11%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR  K   D       +   ++AG+P+  A  V+     D  ++     ++        S
Sbjct: 57  KRREK--TDPAGFSRQLATLLKAGVPLLQAFEVMGRSGCDAAQAALLARLKQDVA----S 110

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
                                +    +  G L   L  L+ +L  R  +  K++   +  
Sbjct: 111 GLGLADALQRHPGWFDTLYCNLVRVGEQSGTLDRQLEQLAGMLEQRLALHKKLRKAMIYP 170

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL-------------INDPRGH--MLLGVAAAF 171
                    +   +   V                        ++   G    +L V+A  
Sbjct: 171 LLLLLTGLGVSAVLLLEVIPQFQSLFAGFDAALPAFTQWVIDLSTGLGRHAPVLLVSAVL 230

Query: 172 MLIG 175
           + + 
Sbjct: 231 LAVA 234



 Score = 40.5 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/137 (11%), Positives = 42/137 (30%), Gaps = 7/137 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISR 71
                     +  S  AG+P+ DA+  +   S   +     +R+ +    G  L+++++ 
Sbjct: 265 QAALARFARSLATSYAAGVPLLDALGTVAKASGGELHQQAIQRLRQGMANGQGLNQAMAA 324

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              + P          +    +  G L + L   +    ++ +         +E      
Sbjct: 325 EPLFPP------LLVQLVAIGESSGTLDQMLEKAASHYEEQVSQALDQLTSLLEPAIVLV 378

Query: 132 IIGSLPFCVSTLVYFTS 148
           +   +   V  +     
Sbjct: 379 LGLLVGGLVVAMYLPIF 395


>gi|326390174|ref|ZP_08211735.1| Type II secretion system F domain [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325993822|gb|EGD52253.1| Type II secretion system F domain [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 403

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 49/146 (33%), Gaps = 6/146 (4%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSE 67
               + D           + AG+P+  A+A I  Q  +  ++     V E    G +LS+
Sbjct: 58  KKVKIKDIAVFCRQFATLINAGIPIVTALATIKEQVENKRLKRAISEVYEEVQKGRTLSD 117

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++ +     P+         +    ++ G L + +  ++        +  KV++      
Sbjct: 118 AMKKYGDVFPM-----LLYNMVEVGEVSGTLDKVMNEMADHYEKENELNQKVKSALTYPL 172

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMN 153
             + +   +   + T V     G   
Sbjct: 173 IVSVVAVLVVIFLLTNVLPIFVGMFK 198



 Score = 37.0 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 7/134 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+P+  A+ V+     + V +E   +  E    GL LSE + R+  + P
Sbjct: 271 FTRTLGTLISAGVPLMKAMEVVEKVVGNTVVAEGLGKAQEDIKKGLPLSEPLKRIGIFPP 330

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         +    +  G+L   L   +       +         +E      +   + 
Sbjct: 331 M------VIQMISIGESSGSLDSILNKTADFYDGEVDTAVSQMTTLLEPLIIVMLATVVG 384

Query: 138 FCVSTLVYFTSPGY 151
           F V ++V      Y
Sbjct: 385 FIVISIVMPLFQLY 398


>gi|34499267|ref|NP_903482.1| general secretion pathway protein F [Chromobacterium violaceum ATCC
           12472]
 gi|34105118|gb|AAQ61474.1| general secretion pathway protein F [Chromobacterium violaceum ATCC
           12472]
          Length = 403

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 47/163 (28%), Gaps = 7/163 (4%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R      +     + +   + AGL +  A+  +  QS +         +        L  
Sbjct: 58  RRGLPRAELVMITEQLSTLLNAGLTLEKALTAVTEQSENARSRTVLAALR----SDILEG 113

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
                         S     +    +  G+L   ++ L+  L  R+N + KV        
Sbjct: 114 KGFAQALSSAPGVFSPLYRSLVQAGEQSGHLDMVMSRLAEYLDKRQNTQQKVTLALAYPA 173

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
               +       V+ L+ +  P  ++V     +    L  A  
Sbjct: 174 ---VVTLVAILVVAGLMSYVVPQVVSVFAQTKQSLPFLTRALV 213



 Score = 34.7 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V +G+P+  A+    G  +  P++      +     G+SLS +++   ++ P    
Sbjct: 276 LSILVGSGVPLLTALETARGLMTMLPMQDAVADAMAKVREGVSLSRALNASRQFPP---- 331

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G LS  L   ++        K       ME      + G +   V 
Sbjct: 332 --VLIHLISSGEASGTLSHMLDRAAQQQEQEVERKLATFTTLMEPLLILVMGGMVLLIVL 389

Query: 142 TLVYFT 147
            ++   
Sbjct: 390 AIMMPI 395


>gi|77166345|ref|YP_344870.1| general secretion pathway protein F [Nitrosococcus oceani ATCC
           19707]
 gi|254435718|ref|ZP_05049225.1| Bacterial type II secretion system protein F domain [Nitrosococcus
           oceani AFC27]
 gi|76884659|gb|ABA59340.1| General secretion pathway protein F [Nitrosococcus oceani ATCC
           19707]
 gi|207088829|gb|EDZ66101.1| Bacterial type II secretion system protein F domain [Nitrosococcus
           oceani AFC27]
          Length = 410

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 60/178 (33%), Gaps = 6/178 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQH 60
           K L  ++     ++       +   +RAGLP+  A ++++  +   PVR    ++ E   
Sbjct: 59  KRLFGRKKTVRQNEVAVLTGELATLLRAGLPLDRAFSILMEIADDGPVRQLLSQLQEQVR 118

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+E++            S     +    + GG L   L  L+  +   K +K  V 
Sbjct: 119 GGSSLAEAMETQAET-----FSPLYISMIRAGEAGGALDVILGRLADFMERSKALKNAVT 173

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +  +       + G     + T V                    + +AA  +L     
Sbjct: 174 SALIYPAILVGVAGLSVIILLTFVVPQFQQLFEDAGKALPVATQIVIAAGNLLQNYWW 231


>gi|187732930|ref|YP_001881748.1| general secretion pathway protein GspF [Shigella boydii CDC
           3083-94]
 gi|187429922|gb|ACD09196.1| general secretion pathway protein GspF [Shigella boydii CDC
           3083-94]
          Length = 407

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLAMLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVMLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMV 178
             +   + T V        + L +        L+ ++ A    G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPSSTRALIAMSDALQASGVYW 229


>gi|327334809|gb|EGE76520.1| putative bacterial type II secretion system protein F domain
           protein [Propionibacterium acnes HL097PA1]
          Length = 249

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 7   KRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +R  +      P AL ++  ++ AGLP+  AV  +      P   + RR+  +   G+  
Sbjct: 101 RRMEQHRAAQLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVPD 160

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S + + +     ++     +  +S     G  +SE L+  +  L+     K + +A    
Sbjct: 161 SRAWNDLA---SVEVWRDPAQDVSRAVDSGEGISELLSAHAAQLQVAAAEKTEKRARKAG 217

Query: 126 AK-ASAWIIGSLPFCVSTLVYFTSPGYM 152
                  +   LP  +   V     G +
Sbjct: 218 VDAIGPLVCCHLPAFLLVGVVPIIAGMV 245


>gi|300715324|ref|YP_003740127.1| outer membrane protein export (MTB) system (type II secretion
           system) [Erwinia billingiae Eb661]
 gi|299061160|emb|CAX58267.1| outer membrane protein export (MTB) system (Type II secretion
           system) [Erwinia billingiae Eb661]
          Length = 399

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/179 (12%), Positives = 51/179 (28%), Gaps = 10/179 (5%)

Query: 1   MKHLIKKRTAKFLDDFPN---ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57
           +     KR       +         +   ++AGL +S ++ ++  +   P      R +E
Sbjct: 43  LSLSAAKRYRAREWQWAQKIAFFRQLATLLKAGLTLSASLNLLAEEHPHPGWQALFRQLE 102

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                             +  Q        +    +L G + E    L+     ++ ++ 
Sbjct: 103 NNVA----EGMPFSDALALWPQVFPPLFPALMYVGELTGRIDECCLQLACQQERQQQLQK 158

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
           KV           +I+         ++ F  P +M+V                 +  G+
Sbjct: 159 KVTKALRYPL---FILSLALLVSIGMLVFVLPEFMSVYQAFNAPLPAFTAGVIALSGGL 214



 Score = 35.1 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/136 (9%), Positives = 40/136 (29%), Gaps = 8/136 (5%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                  +  + +AGL +  ++  +    +  +  E  + ++       ++         
Sbjct: 265 LSRIFMTLALTQQAGLTLLQSLQAVEKTLTSLLWREAIQQLQQH-----IATGYPLYQAL 319

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                 S     +    +  G+L   L  L  +  D   M  ++      A     ++ +
Sbjct: 320 KQHPLFSPVCYQLIKVGEESGSLDSMLVRLGELHED---MTHELADNLAAALEPMMMVIT 376

Query: 136 LPFCVSTLVYFTSPGY 151
                + ++    P +
Sbjct: 377 GVLVGALVIAMYLPIF 392


>gi|187921509|ref|YP_001890541.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
 gi|187719947|gb|ACD21170.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
          Length = 293

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESIS 70
            L   P  LD +  +V AGL ++ A+   V +    P+R EF  V+     GL+  E++ 
Sbjct: 146 ILKHLPIYLDFLTLAVEAGLNINGAIQKAVEKGPEGPLRWEFEHVLRDLKSGLNRMEALY 205

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           RM   + ++EV+     +    ++G  LS++L   S   R  +  +A+ QA+    K   
Sbjct: 206 RMDDRLRIKEVTNLVGTVVQAERMGSGLSKSLRFQSEQRRSERFQRAEKQAMEAPVKLVF 265

Query: 131 WIIGSLPFCVSTLVYF 146
            ++  +      ++ F
Sbjct: 266 PLLVFIFPITFIVLGF 281


>gi|320656344|gb|EFX24251.1| hypothetical protein ECO7815_07074 [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
          Length = 407

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 54/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHS 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +        L+ ++      G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPATTRALIAMSDTLQASGVYW 229


>gi|16759139|ref|NP_454756.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29140689|ref|NP_804031.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213420543|ref|ZP_03353609.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213427393|ref|ZP_03360143.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213612707|ref|ZP_03370533.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213648263|ref|ZP_03378316.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|289823718|ref|ZP_06543330.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25297478|pir||AE0520 protein transport protein HofC STY0164 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16501429|emb|CAD01301.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136313|gb|AAO67880.1| transport protein HofC [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 400

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q          R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P          +    +L G L+E    L+R  + ++ +   V+           
Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPA---I 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183
           I+      V  +++F  P +  +  +      LL      +   G     L++
Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGPAWGWLIL 221


>gi|168213196|ref|ZP_02638821.1| bacterial type II secretion system protein F [Clostridium
           perfringens CPE str. F4969]
 gi|170715199|gb|EDT27381.1| bacterial type II secretion system protein F [Clostridium
           perfringens CPE str. F4969]
          Length = 401

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/152 (11%), Positives = 50/152 (32%), Gaps = 9/152 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D           + +GL +  A+ +++ Q     +R     V      G +L+ S+ + 
Sbjct: 62  KDIAVFCRQFYVMLDSGLSIGKALNILIEQCEKPKLREALIGVNGELKRGETLASSMRK- 120

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                        T +    +  GNL   L  ++        ++ K+++  +       +
Sbjct: 121 ----RKDVFPNLLTSMIDAGERSGNLDIILKRMAEYYEKETKIRGKIKSAMIYPI---VL 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
                  ++ ++ F  P ++ +   +     +
Sbjct: 174 GVVAIIAITFILTFVMPTFVQMFEENNVDLPM 205



 Score = 39.3 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 43/134 (32%), Gaps = 7/134 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77
               +     +G+ +  ++ ++     + +   E  +V E    G  L +SI      M 
Sbjct: 270 FTRTMGIVSSSGMSLVTSIEIVASVVGNKIAEKELLKVKEKVLKGEGLGDSI------MN 323

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           ++        +    +  G+L   L   +    D    + K     +E      +   + 
Sbjct: 324 IKIFPPMLASMVKIGEEAGSLDSILDKTADFYDDELEREIKTATALIEPSMIVLMGIIIG 383

Query: 138 FCVSTLVYFTSPGY 151
           F + +++      Y
Sbjct: 384 FLLISILTPMFKMY 397


>gi|328471389|gb|EGF42284.1| MSHA biogenesis protein MshG [Vibrio parahaemolyticus 10329]
          Length = 407

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 51/168 (30%), Gaps = 8/168 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +    +AG+P+  ++  ++    +    E    V+     G  LS +         
Sbjct: 71  FSRQLFSLTKAGVPLLRSMRGLLQNCENKQLKEALEDVVSELSNGRGLSSA-----MQPH 125

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +  S     +    +  G L EAL  L+         + +++A           I    
Sbjct: 126 NKVFSPLFVSMINVGENTGRLDEALLQLANYYEQELETRKRIKAAMRYPTFVIVFITIAM 185

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM--VMRLMI 183
           F ++ LV             +      + +A +   +     ++  M+
Sbjct: 186 FILNILVIPEFASMFTRFGVELPLPTRILIATSNFFVHYWGLLIAAMV 233



 Score = 38.2 bits (87), Expect = 0.62,   Method: Composition-based stats.
 Identities = 11/135 (8%), Positives = 36/135 (26%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         +++G+P++ ++A+      +              +  ++    +  
Sbjct: 268 RAQLSRFSRTFSLMLKSGVPLNQSLALAGEALGNRFLE-----NRILEMKAAIEAGSTIS 322

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           V  +     +     +    +  G + E L  +S       +   K     +E      +
Sbjct: 323 VTAINSNIFTPLVIQMIAVGEETGRIDELLLEISDFYDREVDYDLKTLTARIEPLLLVIV 382

Query: 133 IGSLPFCVSTLVYFT 147
            G +      +    
Sbjct: 383 AGMVMVLALGIFLPM 397


>gi|320158388|ref|YP_004190766.1| type II/IV secretion system protein TadC, associated with Flp pilus
           assembly [Vibrio vulnificus MO6-24/O]
 gi|319933700|gb|ADV88563.1| type II/IV secretion system protein TadC, associated with Flp pilus
           assembly [Vibrio vulnificus MO6-24/O]
          Length = 292

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 55/150 (36%), Gaps = 4/150 (2%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQHLGLSLSE 67
                  P  LD++   V  G+ +   +  +  +    D   +    V   +   + + +
Sbjct: 144 RHVSSRLPFLLDLMNVCVHTGMTIEATLEYLAKELQTVDKYLAFTVNVTVQRSKVIGIEK 203

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++      +P  E   F   +    Q G ++ + L  L+  +R    M+ + +   + AK
Sbjct: 204 ALEEFYEMVPSSEAQSFVMTLVQSLQFGSSVGQVLGTLATDIRQINMMELEEKIGKLGAK 263

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
            S  +I  +   +       +PG M +L +
Sbjct: 264 MSIPMIVFIMVPIII--LIIAPGIMRMLTD 291


>gi|307610222|emb|CBW99780.1| pilus assembly protein PilC [Legionella pneumophila 130b]
          Length = 406

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 57/187 (30%), Gaps = 14/187 (7%)

Query: 2   KHLIKKRTAKFLD--------DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEF 52
             +IKKR   F          D       +   + +G+P+  A  ++   QS+  ++   
Sbjct: 47  NKVIKKRKPLFDRKNKKITQADITVFSRQLATMIESGIPLVQAFDIVAKGQSNKRLKDLI 106

Query: 53  RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112
             +      GL+L+ES+ +          +     +    +  G+L   L  ++      
Sbjct: 107 ETIKHDIETGLTLAESLIKHPL-----YFNELFCNLVDAGEKSGSLDIMLDKVATYKEKI 161

Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
           + +K K++       A   +   +   +   V             D        +  +  
Sbjct: 162 EIIKKKIKKALTYPIAVMVVALLVTAGLLIYVVPQFESLFKGFGADLPAMTRAVITMSEF 221

Query: 173 LIGIMVM 179
           +     +
Sbjct: 222 MQAYWYI 228



 Score = 40.1 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/136 (10%), Positives = 41/136 (30%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRM 72
                    +  +  AGLP+ +A+  + G + + +      ++ E    G  +  ++   
Sbjct: 271 AAIARFARTLSITFAAGLPLVEALKSVAGATGNIIYAKATDKIREEVATGQQMFTAMEN- 329

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L + L+ ++    +  N      +  +E    + +
Sbjct: 330 -----THLFPNMVIQMVAIGEESGALEKMLSKVADFYEEEVNNAVDALSSLLEPIIMSIL 384

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V  +     
Sbjct: 385 GILVGGLVVAMYLPIF 400


>gi|229821270|ref|YP_002882796.1| type II secretion system protein [Beutenbergia cavernae DSM 12333]
 gi|229567183|gb|ACQ81034.1| type II secretion system protein [Beutenbergia cavernae DSM 12333]
          Length = 315

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 57/146 (39%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   ++ R A+ + +FP   +++  +V AG     A+  +   +   + +E  R +    
Sbjct: 160 LTRQVRAREARIMAEFPTVAELLALAVSAGEAPVAALDRVARSTQGELSAELGRTLADVR 219

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +++ ++  + R   L  VS F+  ++V  + G  L++ L   +   RD    +    
Sbjct: 220 AGATMAGALEGLARRTDLPAVSRFADGVAVAIERGSPLADVLRAQAADARDAGKRELMES 279

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146
               E      ++  +         F
Sbjct: 280 GGRKEVAMMIPVVFLVLPVTVVFALF 305


>gi|218701735|ref|YP_002409364.1| General secretion pathway protein F [Escherichia coli IAI39]
 gi|227887665|ref|ZP_04005470.1| general secretion pathway protein GspF [Escherichia coli 83972]
 gi|300973521|ref|ZP_07172235.1| general secretion pathway protein F [Escherichia coli MS 45-1]
 gi|301019907|ref|ZP_07184042.1| general secretion pathway protein F [Escherichia coli MS 196-1]
 gi|218371721|emb|CAR19571.1| General secretion pathway protein F [Escherichia coli IAI39]
 gi|227835061|gb|EEJ45527.1| general secretion pathway protein GspF [Escherichia coli 83972]
 gi|299882005|gb|EFI90216.1| general secretion pathway protein F [Escherichia coli MS 196-1]
 gi|300410737|gb|EFJ94275.1| general secretion pathway protein F [Escherichia coli MS 45-1]
 gi|307555053|gb|ADN47828.1| general secretion pathway protein GspF [Escherichia coli ABU 83972]
 gi|315291307|gb|EFU50667.1| general secretion pathway protein F [Escherichia coli MS 153-1]
          Length = 407

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 56/167 (33%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+++K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQHLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +       ML+ ++      G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDTLQTSGVYW 229


>gi|218547561|ref|YP_002381352.1| type IV pilin biogenesis protein [Escherichia fergusonii ATCC
           35469]
 gi|218355102|emb|CAQ87709.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia fergusonii ATCC 35469]
          Length = 411

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 58/172 (33%), Gaps = 12/172 (6%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
              +  +   ++AGL +S+ +A++ GQ          + +  +    +            
Sbjct: 72  AEVIHQLATLLKAGLTLSEGLALLAGQHPSKQWQALLQTLAHELEQGN----ALSRALTQ 127

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
             +        +    +L G L E    L+R  + +  +  KV+           I+   
Sbjct: 128 WSEVFPPLYQAMIRTGELTGKLDECCFELARQQKAQHLLAEKVKKALRYPL---IILTLA 184

Query: 137 PFCVSTLVYFTSPGYMNVL--INDP---RGHMLLGVAAAFMLIGIMVMRLMI 183
              V  +++F  P +  +    N P       ++  A      G ++M L++
Sbjct: 185 IVVVVAMLHFVLPEFAAIYKTFNTPLPALTQGVMATADFISQWGGLIMALIV 236


>gi|221134991|ref|ZP_03561294.1| general secretion pathway protein F [Glaciecola sp. HTCC2999]
          Length = 408

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/171 (11%), Positives = 53/171 (30%), Gaps = 6/171 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           +       +   V A LP+ +A+  +  QS  P +      +        +         
Sbjct: 69  ELSLLTRQLATLVEASLPIEEALLAVAEQSEKPRQKNMMMAVR----SKVVEGFGLAEAL 124

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                        +    +  G+L   L  L+    +R+  +++V    +      +   
Sbjct: 125 GDFPSVFDTLFIAMVAAGEKSGHLDIVLNRLADYTENREKTRSQVVQAMIYPALMMFFAV 184

Query: 135 SLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVMRLMI 183
           ++   + T+V          +     P   +++ ++       + V+ L+I
Sbjct: 185 AITVLLLTVVVPKIVTQFQHMGQGLPPITQLVMDISTFLQASWMWVVGLLI 235


>gi|218710510|ref|YP_002418131.1| type IV pilin assembly protein pilC [Vibrio splendidus LGP32]
 gi|218323529|emb|CAV19719.1| Type IV pilin assembly protein pilC [Vibrio splendidus LGP32]
          Length = 408

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 50/148 (33%), Gaps = 6/148 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +  G+P+  A+ ++        ++S    +      G  +S+++   
Sbjct: 68  KDITILTRQLATMLATGVPIVQAIKLVSDNHRKAEMKSILLHICRGVEAGTPISKAMRTA 127

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +          T +    +L GNL++    L+      + +K+KV    +       +
Sbjct: 128 STH-----FDDLYTDLVATGELSGNLAQVFERLATYREKSEQLKSKVIKALIYPTMVVAV 182

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR 160
             ++ + + T+V        +    D  
Sbjct: 183 ALTVSYLMLTMVIPEFESMFSSFGADLP 210



 Score = 36.3 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/131 (9%), Positives = 37/131 (28%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +  S  +G+P+  ++      + +         V      G+ +  ++        
Sbjct: 277 FSRTLSTSFSSGIPILTSLKTTAKTAGNLHYESAIIEVHRETAAGMPMYIAMRN------ 330

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     + +  +  GNL + L  ++ I     +         +E     ++  ++ 
Sbjct: 331 TDAFPEMVLQMVMIGEESGNLDDMLNKIASIYEFEVDNTVDNLGKILEPLIIVFLGTAIG 390

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 391 GLVVAMYLPIF 401


>gi|169347023|ref|ZP_02865965.1| bacterial type II secretion system protein F [Clostridium
           perfringens C str. JGS1495]
 gi|169296706|gb|EDS78835.1| bacterial type II secretion system protein F [Clostridium
           perfringens C str. JGS1495]
          Length = 401

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/152 (11%), Positives = 50/152 (32%), Gaps = 9/152 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D           + +GL +  A+ +++ Q     +R     V      G +L+ S+ + 
Sbjct: 62  KDIAVFCRQFYVMLDSGLSIGKALNILIEQCEKPKLREALIGVNGELKRGETLASSMRK- 120

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                        T +    +  GNL   L  ++        ++ K+++  +       +
Sbjct: 121 ----RKDVFPNLLTSMIDAGERSGNLDIILKRMADYYEKETKIRGKIKSAMIYPI---VL 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
                  ++ ++ F  P ++ +   +     +
Sbjct: 174 GVVAIIAITFILTFVMPTFVQMFEENNVDLPM 205



 Score = 38.9 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 43/134 (32%), Gaps = 7/134 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77
               +     +G+ +  ++ ++     + +   E  +V E    G  L +SI      M 
Sbjct: 270 FTRTMGIVSSSGMSLVTSIEIVASVVGNKIAEKELLKVKEKVLKGEGLGDSI------MN 323

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           ++        +    +  G+L   L   +    D    + K     +E      +   + 
Sbjct: 324 IKIFPPMLASMVKIGEEAGSLDSILDKTADFYDDELEREIKTATALIEPSMIVLMGIIIG 383

Query: 138 FCVSTLVYFTSPGY 151
           F + +++      Y
Sbjct: 384 FLLISILTPMFKMY 397


>gi|152968739|ref|YP_001333848.1| pullulanase F protein [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|330010539|ref|ZP_08306773.1| general secretion pathway protein F [Klebsiella sp. MS 92-3]
 gi|150953588|gb|ABR75618.1| Pullulanase F protein [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|328534524|gb|EGF61111.1| general secretion pathway protein F [Klebsiella sp. MS 92-3]
          Length = 404

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/143 (11%), Positives = 40/143 (27%), Gaps = 7/143 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           D       +   V AG+P+  A+  +  Q          R +        L         
Sbjct: 65  DLALLTRQLATLVAAGIPLEKALDAVAQQCE----KPSLRTLMAGVRSKVLEGHSLAEAM 120

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                        +    +  G+L   L  L+     R+ ++A++    +       +  
Sbjct: 121 RGYPACFDGLFCAMVAAGETSGHLDGVLNRLADYTEQRQQLRARLLQAMIYPI---VLTL 177

Query: 135 SLPFCVSTLVYFTSPGYMNVLIN 157
                ++ L+    P  +   ++
Sbjct: 178 VAISVIAILLSTVVPKVVEQFVH 200


>gi|291284341|ref|YP_003501159.1| hypothetical protein G2583_3684 [Escherichia coli O55:H7 str.
           CB9615]
 gi|290764214|gb|ADD58175.1| Hypothetical type II secretion protein [Escherichia coli O55:H7
           str. CB9615]
 gi|320661715|gb|EFX29123.1| hypothetical protein ECO5905_11598 [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 407

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 54/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHS 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
             +   + T V        + L +        L+ ++      G+  
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPATTRALIAMSDTLQASGVYW 229


>gi|269792663|ref|YP_003317567.1| type II secretion system protein [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269100298|gb|ACZ19285.1| type II secretion system protein [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 401

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 10/163 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
            D   A   +   + AG+ V+ A+ +I  Q  +  +   F  V      G  L+++++  
Sbjct: 63  KDVALAFRQLATMISAGITVAGALGIIKEQVQNRALAKAFDNVSRGVMSGRGLADAMASE 122

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             + P          I    + GG L  +L  L+ +L  ++ ++ K+ +  +       +
Sbjct: 123 STFSP------LVVSIVRAGEEGGVLDLSLQRLATLLEKQEALRRKISSALVYPM---VV 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           +      +  LV+   P +  V         L+         G
Sbjct: 174 LCICVMVLGILVFVIIPRFSLVFNQMGIELPLITRIVFAFANG 216


>gi|262191507|ref|ZP_06049691.1| MSHA biogenesis protein MshG [Vibrio cholerae CT 5369-93]
 gi|262032605|gb|EEY51159.1| MSHA biogenesis protein MshG [Vibrio cholerae CT 5369-93]
          Length = 407

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/165 (9%), Positives = 43/165 (26%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72
           +        +    +AG+P+  ++  +     +         V      G +LS      
Sbjct: 67  EVLVIFCRQMFSLTKAGVPLLRSMRGLSQNCHNKQLKAALDSVCNELTNGRNLS-----A 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +     S     +    +  G L +AL  L+         + +++            
Sbjct: 122 SMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITF 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +    F ++  V        +    D      + +  +   +   
Sbjct: 182 VLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYW 226



 Score = 41.3 bits (95), Expect = 0.061,   Method: Composition-based stats.
 Identities = 10/135 (7%), Positives = 35/135 (25%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         + AG+P++ ++A+      +    +         +   +   ++  
Sbjct: 269 RAQLSRFARTFSLMLSAGVPLNQSLALSAEAIDNKFLEQRIL-----EMKSQIESGVAVS 323

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +     +     +    +  G + E L  +S       +   K     +E     ++
Sbjct: 324 ATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLVFV 383

Query: 133 IGSLPFCVSTLVYFT 147
              +      +    
Sbjct: 384 AAMVLVLALGIFLPM 398


>gi|28899474|ref|NP_799079.1| MSHA biogenesis protein MshG [Vibrio parahaemolyticus RIMD 2210633]
 gi|153840088|ref|ZP_01992755.1| msha biogenesis protein mshg [Vibrio parahaemolyticus AQ3810]
 gi|260363358|ref|ZP_05776210.1| msha biogenesis protein mshg [Vibrio parahaemolyticus K5030]
 gi|260879292|ref|ZP_05891647.1| msha biogenesis protein mshg [Vibrio parahaemolyticus AN-5034]
 gi|260897286|ref|ZP_05905782.1| msha biogenesis protein mshg [Vibrio parahaemolyticus Peru-466]
 gi|260902471|ref|ZP_05910866.1| msha biogenesis protein mshg [Vibrio parahaemolyticus AQ4037]
 gi|28807710|dbj|BAC60963.1| MSHA biogenesis protein MshG [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746320|gb|EDM57383.1| msha biogenesis protein mshg [Vibrio parahaemolyticus AQ3810]
 gi|308087228|gb|EFO36923.1| msha biogenesis protein mshg [Vibrio parahaemolyticus Peru-466]
 gi|308093095|gb|EFO42790.1| msha biogenesis protein mshg [Vibrio parahaemolyticus AN-5034]
 gi|308109564|gb|EFO47104.1| msha biogenesis protein mshg [Vibrio parahaemolyticus AQ4037]
 gi|308111211|gb|EFO48751.1| msha biogenesis protein mshg [Vibrio parahaemolyticus K5030]
          Length = 407

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 51/168 (30%), Gaps = 8/168 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +    +AG+P+  ++  ++    +    E    V+     G  LS +         
Sbjct: 71  FSRQLFSLTKAGVPLLRSMRGLLQNCENKQLKEALEDVVSELSNGRGLSSA-----MQPH 125

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +  S     +    +  G L EAL  L+         + +++A           I    
Sbjct: 126 NKVFSPLFVSMINVGENTGRLDEALLQLANYYEQELETRKRIKAAMRYPTFVIVFITIAM 185

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM--VMRLMI 183
           F ++ LV             +      + +A +   +     ++  M+
Sbjct: 186 FILNILVIPEFASMFTRFGVELPLPTRILIATSNFFVHYWGLLIAAMV 233



 Score = 38.2 bits (87), Expect = 0.60,   Method: Composition-based stats.
 Identities = 11/135 (8%), Positives = 36/135 (26%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         +++G+P++ ++A+      +              +  ++    +  
Sbjct: 268 RAQLSRFARTFSLMLKSGVPLNQSLALAGEALGNRFLE-----NRILEMKAAIEAGSTIS 322

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           V  +     +     +    +  G + E L  +S       +   K     +E      +
Sbjct: 323 VTAINSNIFTPLVIQMIAVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPLLLVIV 382

Query: 133 IGSLPFCVSTLVYFT 147
            G +      +    
Sbjct: 383 AGMVMVLALGIFLPM 397


>gi|329848233|ref|ZP_08263261.1| bacterial type II secretion system protein F domain protein
           [Asticcacaulis biprosthecum C19]
 gi|328843296|gb|EGF92865.1| bacterial type II secretion system protein F domain protein
           [Asticcacaulis biprosthecum C19]
          Length = 403

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/162 (12%), Positives = 55/162 (33%), Gaps = 12/162 (7%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           D    L  +   +RAG  +  A+ V+   S   +R   +++         L  +      
Sbjct: 70  DLEEFLRNLAVLLRAGADIRTALGVVGSDSHPQIRDVSQKI---------LGGASLDAAL 120

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
              +         +    +  G+++  L   +++L  R+ ++ ++           ++  
Sbjct: 121 GHVIPPGLTHLRGLIAAGEARGDVASGLDGAAQVLTTRRKIRQQLFEALSYPV---FVFA 177

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
           +    +S ++    P    +L +  R   +      F+  G+
Sbjct: 178 TALAALSIILLVVVPAIAPLLSDTGRDPPVYFAIIVFLSEGL 219


>gi|295129801|ref|YP_003580464.1| hypothetical protein HMPREF0675_3278 [Propionibacterium acnes
           SK137]
 gi|291376757|gb|ADE00612.1| conserved hypothetical protein [Propionibacterium acnes SK137]
 gi|313772773|gb|EFS38739.1| conserved hypothetical protein [Propionibacterium acnes HL074PA1]
 gi|313810913|gb|EFS48627.1| conserved hypothetical protein [Propionibacterium acnes HL083PA1]
 gi|313831678|gb|EFS69392.1| conserved hypothetical protein [Propionibacterium acnes HL007PA1]
 gi|313834347|gb|EFS72061.1| conserved hypothetical protein [Propionibacterium acnes HL056PA1]
 gi|313840369|gb|EFS78083.1| conserved hypothetical protein [Propionibacterium acnes HL086PA1]
 gi|314974781|gb|EFT18876.1| conserved hypothetical protein [Propionibacterium acnes HL053PA1]
 gi|314977019|gb|EFT21114.1| conserved hypothetical protein [Propionibacterium acnes HL045PA1]
 gi|314985440|gb|EFT29532.1| conserved hypothetical protein [Propionibacterium acnes HL005PA1]
 gi|315082166|gb|EFT54142.1| conserved hypothetical protein [Propionibacterium acnes HL078PA1]
 gi|315097274|gb|EFT69250.1| conserved hypothetical protein [Propionibacterium acnes HL038PA1]
 gi|327331301|gb|EGE73040.1| hypothetical protein HMPREF9338_00673 [Propionibacterium acnes
           HL096PA2]
 gi|327447320|gb|EGE93974.1| hypothetical protein HMPREF9570_01603 [Propionibacterium acnes
           HL043PA1]
 gi|327450234|gb|EGE96888.1| hypothetical protein HMPREF9571_00214 [Propionibacterium acnes
           HL043PA2]
 gi|328761170|gb|EGF74713.1| hypothetical protein HMPREF9343_01124 [Propionibacterium acnes
           HL099PA1]
          Length = 256

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 59/171 (34%), Gaps = 5/171 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            +   A   +   V  G   S A+  +             +    Q +G S+S+++    
Sbjct: 83  REVARATRALAGRVSVGEIPSVALEHVADDVE-----VLAQARRAQAVGGSVSDALIATS 137

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R   +  +   +    + +  G  L+ A  +++     R  ++A + +    A+AS  I+
Sbjct: 138 RQPGMAGLVPLAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIM 197

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           G LP     + +         L     G   L  +     +G++    + +
Sbjct: 198 GLLPLVGLLMGHVVGAHPTVFLTTTWLGRACLLGSTLLACVGVLWSESLAD 248


>gi|197250502|ref|YP_002145129.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197214205|gb|ACH51602.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 400

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q          R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P          +    +L G L+E    L+R  + ++ +   V+           
Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPV---I 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183
           I+      V  +++F  P +  +  +      LL      +   G     L++
Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSTWGWLIL 221


>gi|324112483|gb|EGC06460.1| type II secretion system protein F [Escherichia fergusonii B253]
 gi|325496039|gb|EGC93898.1| type IV pilin biogenesis protein [Escherichia fergusonii ECD227]
          Length = 400

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 58/172 (33%), Gaps = 12/172 (6%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
              +  +   ++AGL +S+ +A++ GQ          + +  +    +            
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAGQHPSEQWQALLQTLAHELEQGN----ALSRALTQ 116

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
             +        +    +L G L E    L+R  + +  +  KV+           I+   
Sbjct: 117 WSEVFPPLYQAMIRTGELTGKLDECCFELARQQKAQHLLAEKVKKALRYPL---IILTLA 173

Query: 137 PFCVSTLVYFTSPGYMNVL--INDP---RGHMLLGVAAAFMLIGIMVMRLMI 183
              V  +++F  P +  +    N P       ++  A      G ++M L++
Sbjct: 174 IVVVVAMLHFVLPEFAAIYKTFNTPLPALTQGVMATADFISQWGGLIMALIV 225


>gi|261250241|ref|ZP_05942817.1| type 4 fimbrial assembly protein PilC [Vibrio orientalis CIP
           102891]
 gi|260939357|gb|EEX95343.1| type 4 fimbrial assembly protein PilC [Vibrio orientalis CIP
           102891]
          Length = 408

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 54/169 (31%), Gaps = 14/169 (8%)

Query: 1   MKHLIKKRTAKFLD--------DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSE 51
           ++ L  KR + F          D       +   +  G+P+  A+ ++   Q    + S 
Sbjct: 47  IRKLKVKRVSAFTRLAQRVKTKDITLLTRQLATMLATGVPIIHALKLVADNQRKAEMTSI 106

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111
             ++ +    G  +S+ +     +            +    +  GNL++A   ++     
Sbjct: 107 LAQISKGIESGTPISKVMHATSSH-----FDRLYIDLVATGEQTGNLADAFERIASYREK 161

Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
            + ++AKV    +           + + + T+V             D  
Sbjct: 162 SERLRAKVIKALIYPCMVVTTALVVSYLMLTMVIPQFESMFKGFGADLP 210



 Score = 37.8 bits (86), Expect = 0.78,   Method: Composition-based stats.
 Identities = 13/131 (9%), Positives = 36/131 (27%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +  S+ AG+P+   +      + +   +    RV +    G+ +  ++        
Sbjct: 277 FSRTLATSLSAGIPILSCLTSSAKTADNIYYQQAIERVYDDTAAGVPIYIAMRNA----- 331

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     + +  +  G L + L  ++ I               +E      +   + 
Sbjct: 332 -HCFPEMILQMVMIGEESGRLDDMLNKVASIYEFEVEDTVDNLGKVLEPLIIVLLGIVVG 390

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 391 GLVVAMYLPVF 401


>gi|255316490|ref|ZP_05358073.1| hypothetical protein CdifQCD-7_19177 [Clostridium difficile
           QCD-76w55]
          Length = 317

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 72/182 (39%), Gaps = 4/182 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQ 59
           K L  KR  K      + + II+   +    +S ++   +   Q S+P+ SE ++ +   
Sbjct: 127 KTLSNKRVTKMESQIGSFIRIIIERYKINKNISKSLVETLPDFQGSEPLYSELKKSVVDI 186

Query: 60  HLGLSLSESISRMVRYMPLQEVS--FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
            LG+ + E +S + R    + +        +S       +  + L        D + +K 
Sbjct: 187 DLGIPIEEVLSSLARRTGSKYLKLFSNYYEVSSMLSSQESKIKILTTSFNQYEDNRIIKR 246

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
            ++   M     ++I+      +     F S GY++ +IN+  G M L      +L+ + 
Sbjct: 247 DLRKEIMGPVRESYIMVFAIPVLMLYQSFVSDGYLDFMINEKIGQMGLTGIFVSILLCVW 306

Query: 178 VM 179
            +
Sbjct: 307 FI 308


>gi|113968503|ref|YP_732296.1| general secretion pathway protein F [Shewanella sp. MR-4]
 gi|114045666|ref|YP_736216.1| general secretion pathway protein F [Shewanella sp. MR-7]
 gi|113883187|gb|ABI37239.1| general secretion pathway protein F [Shewanella sp. MR-4]
 gi|113887108|gb|ABI41159.1| general secretion pathway protein F [Shewanella sp. MR-7]
          Length = 407

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 6/171 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            +       I   V AGLP+ + +  +  Q     + S    V      G SL++S++  
Sbjct: 67  AELALITRQIATLVAAGLPIEECLKAVGQQCEKARLASMIMAVRSRVVEGYSLADSLAEF 126

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G+L   L  L+     R+ +K+K+Q   +       +
Sbjct: 127 P-----HIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKLQQAMIYPIMLTIV 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
              +   +   V     G    +  +        +AA+  +    ++ ++I
Sbjct: 182 AIGVVSVLLAAVVPKVVGQFEHMGAELPATTRFLIAASDFVQSYGLLVVLI 232


>gi|27364988|ref|NP_760516.1| type 4 fimbrial assembly protein pilC [Vibrio vulnificus CMCP6]
 gi|27361134|gb|AAO10043.1| Type 4 fimbrial assembly protein pilC [Vibrio vulnificus CMCP6]
          Length = 408

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/154 (10%), Positives = 45/154 (29%), Gaps = 9/154 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +  G+P+  ++ ++        ++S    V +    G  LS+++   
Sbjct: 68  KDITLLTRQLATMLTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTPLSKALRSA 127

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                  +       +    +  GNL +    L+      + ++AKV    +       +
Sbjct: 128 S-----PQFDGIYVDLVATGEQSGNLDQVFERLAFYREKNEQLRAKVIKALIYP---CMV 179

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
           +         ++    P +  +            
Sbjct: 180 VLVALGVSYLMLTKVIPEFRKMFTGFGAELPWFT 213



 Score = 35.9 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/136 (8%), Positives = 37/136 (27%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
                    +  S  AG+P+  ++      + +   +     V      G+ +  ++   
Sbjct: 272 AAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAAGMPMYIAMRN- 330

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          + +  +  G + + L  ++ I     +         +E     ++
Sbjct: 331 -----SLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFL 385

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V+ +     
Sbjct: 386 GVVVGGLVTAMYLPIF 401


>gi|89075292|ref|ZP_01161719.1| putative MSHA biogenesis protein MshG [Photobacterium sp. SKA34]
 gi|89048973|gb|EAR54541.1| putative MSHA biogenesis protein MshG [Photobacterium sp. SKA34]
          Length = 408

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/171 (9%), Positives = 44/171 (25%), Gaps = 9/171 (5%)

Query: 12  FLDDFPN-----ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           F    P          +    +AG+P+  A   +   +S P+       +          
Sbjct: 60  FQAQLPLEVLVIFCRQLYSLTKAGVPLLRAFKGLSQSASHPLLKTTLEALTLDLTNGR-- 117

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
                +      +  S     +    +  G L + L  L+       N + ++++     
Sbjct: 118 --ALSVAMQQHPRVFSRLFISLIHVGENTGRLDQVLLQLANYYEQEVNTRRQIKSAMRYP 175

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
                 I      ++T V        +    +      + +  +   +   
Sbjct: 176 TFVLTAIVIAMGILNTKVIPQFASMFSRFGVELPWPTRVLIGTSNFFVHYW 226



 Score = 44.0 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/135 (8%), Positives = 31/135 (22%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         +RAG+P++ A+ +      +              +   +    S  
Sbjct: 269 RAQMARFARTFSLMIRAGVPLNQAIQMAAESLGNRFLE-----NRLIEMKQGIEGGSSIS 323

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    +     +    +  G + E L  ++           K     +E      +
Sbjct: 324 STATKSGVFTPLVLQMIAVGEETGQVDELLLEVADFYDREVEYDLKTLTARIEPIMLVVV 383

Query: 133 IGSLPFCVSTLVYFT 147
            G +      +    
Sbjct: 384 AGMVLLLALGIFLPM 398


>gi|86148307|ref|ZP_01066602.1| type IV pilin biogenesis protein PilC [Vibrio sp. MED222]
 gi|85833932|gb|EAQ52095.1| type IV pilin biogenesis protein PilC [Vibrio sp. MED222]
          Length = 408

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 50/148 (33%), Gaps = 6/148 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +  G+P+  A+ ++        ++S    +      G  +S+++   
Sbjct: 68  KDITILTRQLATMLATGVPIVQAIKLVSDNHRKAEMKSILLHICRGVEAGTPISKAMRTA 127

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +          T +    +L GNL++    L+      + +K+KV    +       +
Sbjct: 128 SSH-----FDDLYTDLVATGELSGNLAQVFERLATYREKSEQLKSKVIKALIYPTMVVAV 182

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR 160
             ++ + + T+V        +    D  
Sbjct: 183 ALTVSYLMLTMVIPEFESMFSGFGADLP 210



 Score = 36.3 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/131 (9%), Positives = 37/131 (28%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +  S  +G+P+  ++      + +         V      G+ +  ++        
Sbjct: 277 FSRTLSTSFSSGIPILTSLKTTAKTAGNLHYESAIIEVHRETAAGMPMYIAMRN------ 330

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     + +  +  GNL + L  ++ I     +         +E     ++  ++ 
Sbjct: 331 TDAFPEMVLQMVMIGEESGNLDDMLNKIASIYEFEVDNTVDNLGKILEPLIIVFLGTAIG 390

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 391 GLVVAMYLPIF 401


>gi|95931257|ref|ZP_01313976.1| General secretion pathway protein F [Desulfuromonas acetoxidans DSM
           684]
 gi|95132693|gb|EAT14373.1| General secretion pathway protein F [Desulfuromonas acetoxidans DSM
           684]
          Length = 404

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 59/157 (37%), Gaps = 6/157 (3%)

Query: 28  RAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           +AG+P+ +A+  +V Q  +P     + +V E    G SL ++++   R  P         
Sbjct: 79  QAGVPLDEALQSVVEQVENPAQARLYTQVREEVRQGSSLFQALAEQGRSFPDLYQR---- 134

Query: 87  VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
            +    +  G L + L  L+  L ++  ++++  +        A +   +   + + V  
Sbjct: 135 -MVEVGENSGTLDQVLLRLADFLEEQARLRSRTVSALAYPVLMAIVGVGVLLFLLSFVVP 193

Query: 147 TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
                +  L         L +  + ++     +  ++
Sbjct: 194 KITRMLTDLGQALPLPTRLLITTSDLISAYGWLVALL 230



 Score = 33.9 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 13/140 (9%), Positives = 38/140 (27%), Gaps = 7/140 (5%)

Query: 11  KFLDDFPN--ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
           +   +         +   + +G+P+  A+ +    S   + ++  R             +
Sbjct: 263 RIQREIATARFSRTLGTLLHSGVPLLKALEI----SCGLLSNKVLRTAVETTSLEVREGA 318

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                              ++   +  G L E L  ++     +  +        +E   
Sbjct: 319 SLAEP-LKRSGVFPPLLAQMTAVGERSGTLEEMLIKVADSQDRQVEITLAGLLSLLEPLM 377

Query: 129 SAWIIGSLPFCVSTLVYFTS 148
              + G + F V  ++    
Sbjct: 378 ILAMGGIIGFIVLAVLLPIF 397


>gi|300088313|ref|YP_003758835.1| type II secretion system F domain-containing protein
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528046|gb|ADJ26514.1| Type II secretion system F domain protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 401

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 51/159 (32%), Gaps = 6/159 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMVRYMP 77
               +   + +G  +  A+ ++  Q+++         V      G SLS ++S+  +   
Sbjct: 68  FSRQLALLLESGTDIVTALELLQEQTTNKTFRTTLGHVANDIRGGSSLSGAMSKHPKVFS 127

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    + GGNL   L N++  L+     + K+++        A +   + 
Sbjct: 128 PLFHR-----VLSAGEQGGNLEVVLRNMADFLQRMNETRKKIKSALTYPIVVAVVAVIVV 182

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
             +   V  T       L  +      + ++        
Sbjct: 183 AVLMIFVLPTFTDLYRQLGTELPTATKILISVTDFSTAY 221



 Score = 33.9 bits (76), Expect = 9.5,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 46/151 (30%), Gaps = 6/151 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K  +  R  +  +    A   I    +AGLP+ + +      +S+ + SE         
Sbjct: 254 LKMPVIGRIIQLSE-LSRASQTIALLFKAGLPLPEIIVQAKNATSNKIVSEALE-----E 307

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +   L             +        +    +  G L + L+ ++       + + K  
Sbjct: 308 VQKELIRGEGISGPMARRKVFLPMMVQMVGVGEETGKLDDTLSTVAHTYDMESDDRIKGA 367

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
              ++   +  I   + F    LV      Y
Sbjct: 368 IDLIQPAMTVIIGIIVAFIAVALVSSMYSMY 398


>gi|313822020|gb|EFS59734.1| type II secretion system F domain protein [Propionibacterium acnes
           HL036PA1]
 gi|314926542|gb|EFS90373.1| type II secretion system F domain protein [Propionibacterium acnes
           HL036PA3]
          Length = 249

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 5/148 (3%)

Query: 7   KRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +R  +      P AL ++  ++ AGLP+  AV  +      P   + RR+  +   G+  
Sbjct: 101 RRMEQHRAAQLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVPD 160

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S + + +     ++     +  +S     G  +SE L+  +  L+     K + +A    
Sbjct: 161 SRAWNDLA---SVEVWRDPAQDVSRAVDSGEGISELLSAHAAQLQVAAAEKTEKKARKAG 217

Query: 126 AK-ASAWIIGSLPFCVSTLVYFTSPGYM 152
                  +   LP      V     G +
Sbjct: 218 VDAIGPLVCCHLPAFSLVGVVPIIAGMV 245


>gi|168216750|ref|ZP_02642375.1| bacterial type II secretion system protein F [Clostridium
           perfringens NCTC 8239]
 gi|182381171|gb|EDT78650.1| bacterial type II secretion system protein F [Clostridium
           perfringens NCTC 8239]
          Length = 401

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/152 (11%), Positives = 50/152 (32%), Gaps = 9/152 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D           + +GL +  A+ +++ Q     +R     V      G +L+ S+ + 
Sbjct: 62  KDIAVFCRQFYVMLDSGLSIGKALNILIEQCEKPKLREALIGVNGELKRGETLASSMRK- 120

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                        T +    +  GNL   L  ++        ++ K+++  +       +
Sbjct: 121 ----RKDVFPNLLTSMIDAGERSGNLDIILKRMAEYYEKETKIRGKIKSAMIYPI---VL 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
                  ++ ++ F  P ++ +   +     +
Sbjct: 174 GVVAIIAITFILTFVMPTFVQMFEENNVDLPM 205



 Score = 38.9 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 43/134 (32%), Gaps = 7/134 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77
               +     +G+ +  ++ ++     + +   E  +V E    G  L +SI      M 
Sbjct: 270 FTRTMGIVSSSGMSLVTSIEIVASVVGNKIAEKELLKVKEKVLKGEGLGDSI------MN 323

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           ++        +    +  G+L   L   +    D    + K     +E      +   + 
Sbjct: 324 IKIFPPMLASMVKIGEEAGSLDSILDKTADFYDDELEREIKTATALIEPSMIVLMGIIIG 383

Query: 138 FCVSTLVYFTSPGY 151
           F + +++      Y
Sbjct: 384 FLLISILTPMFKMY 397


>gi|320333779|ref|YP_004170490.1| type II secretion system F domain-containing protein [Deinococcus
           maricopensis DSM 21211]
 gi|319755068|gb|ADV66825.1| Type II secretion system F domain protein [Deinococcus maricopensis
           DSM 21211]
          Length = 406

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 52/149 (34%), Gaps = 9/149 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+P+  ++A++  Q      +   R +      GL LSE+IS+  +   
Sbjct: 71  FSRQLATLINAGVPLVQSLAIMQRQIEHKGFQKVVREMRTDVEGGLPLSEAISKHPK--- 127

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               S     +    +  G L   +  +S  L  +  +  K+++          ++    
Sbjct: 128 --VFSRLYINLVRAGETSGTLDAIMDRISFFLEKQLALTGKIKSALTYPV---IVLVFAI 182

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
                L+    P + +VL +       L 
Sbjct: 183 LITYFLLTTIVPQFASVLTSLNAPLPALT 211


>gi|312199821|ref|YP_004019882.1| type II secretion system F [Frankia sp. EuI1c]
 gi|311231157|gb|ADP84012.1| Type II secretion system F domain protein [Frankia sp. EuI1c]
          Length = 323

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 60/157 (38%), Gaps = 6/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I+ R  + L +FP   +++  +V AG     A+  +   +   +  E R  +    
Sbjct: 167 LTRAIRAREDRMLMEFPTIAELLALAVTAGESPVGALERVARLTHGELGYELRLALADAR 226

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +L +++  +     L  ++ F   ++V  + G  L++ L   +  +R+        +
Sbjct: 227 AGATLVQALEGIATRTTLGSLARFVDGMAVAIERGTPLADVLRAQAVDVREAG------R 280

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
              +E+     I   +P     L       +   L++
Sbjct: 281 RQLLESGGRKEIAMMVPVVFLVLPTTVIFAFYPALVS 317


>gi|159903363|ref|YP_001550707.1| Type II secretory pathway, component PulF [Prochlorococcus marinus
           str. MIT 9211]
 gi|159888539|gb|ABX08753.1| Type II secretory pathway, component PulF [Prochlorococcus marinus
           str. MIT 9211]
          Length = 385

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 59/178 (33%), Gaps = 8/178 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71
             D       +   +++G+P++  + ++     +   +     +      G  LS  +  
Sbjct: 43  QKDLLVFFRQLSVMLQSGVPLAQGLELLSENMINKKFAACIFDISRRLSGGQELSSCLRI 102

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             R          +  +    + GG LS+ L  ++ +L     +K ++    +       
Sbjct: 103 YPRIFAP-----ITIGLIEAGEAGGILSKVLERIALLLEANAKLKGQITGALVYPLVVLV 157

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM--LLGVAAAFMLIGIMVMRLMINFDV 187
           +  ++   +   +  T     + L  +  G    +L ++      G +V   +  F V
Sbjct: 158 LAVTISLALLIFIVPTFKELFDGLGAELPGLTAFMLLLSNIVTSTGFLVGAPITIFIV 215


>gi|86739494|ref|YP_479894.1| type II secretion system protein [Frankia sp. CcI3]
 gi|86566356|gb|ABD10165.1| type II secretion system protein [Frankia sp. CcI3]
          Length = 316

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 58/157 (36%), Gaps = 6/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I +R  + L +FP   +++  +V AG     A+  +   +   +  E R  +    
Sbjct: 160 LSRAISEREDRMLLEFPTIAELLALAVTAGESAIGALERVSRLTHGELGRELRLALADAR 219

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +L +++  +     L  +  F   ++V  + G  L++ L   +   R+        +
Sbjct: 220 AGATLVQALEGIAARTALAPLVRFVDGMAVAIERGTPLADILRAQAVDAREAG------K 273

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
              +EA     I   +P     L       +   L++
Sbjct: 274 RQLLEAGGRKEIAMMIPVVFLVLPTTVIFAFYPALVS 310


>gi|54294434|ref|YP_126849.1| pilus assembly protein PilC [Legionella pneumophila str. Lens]
 gi|53754266|emb|CAH15743.1| pilus assembly protein PilC [Legionella pneumophila str. Lens]
          Length = 406

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/187 (12%), Positives = 57/187 (30%), Gaps = 14/187 (7%)

Query: 2   KHLIKKRTAKFLD--------DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEF 52
             ++KKR   F          D       +   + +G+P+  A  ++   QS+  ++   
Sbjct: 47  NKVVKKRKPLFDRKNKKITQADITVFSRQLATMIESGIPLVQAFDIVAKGQSNKRLKDLI 106

Query: 53  RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112
             +      GL+L+ES+ +          +     +    +  G+L   L  ++      
Sbjct: 107 ETIKHDIETGLTLAESLIKHPL-----YFNELFCNLVDAGEKSGSLDIMLDKVATYKEKI 161

Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
           + +K K++       A   +   +   +   V             D        +  +  
Sbjct: 162 EIIKKKIKKALTYPIAVMVVALLVTAGLLIYVVPQFESLFKGFGADLPAMTRAVITMSEF 221

Query: 173 LIGIMVM 179
           +     +
Sbjct: 222 MQAYWYI 228



 Score = 40.5 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/136 (10%), Positives = 41/136 (30%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRM 72
                    +  +  AGLP+ +A+  + G + + +      ++ E    G  +  ++   
Sbjct: 271 AAIARFARTLSITFAAGLPLVEALKSVAGATGNIIYAKATDKIREEVATGQQMFTAMEN- 329

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L + L+ ++    +  N      +  +E    + +
Sbjct: 330 -----THLFPNMVIQMVAIGEESGALEKMLSKVADFYEEEVNNAVDALSSLLEPIIMSIL 384

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V  +     
Sbjct: 385 GILVGGLVVAMYLPIF 400


>gi|238761571|ref|ZP_04622546.1| Type II secretion system protein [Yersinia kristensenii ATCC 33638]
 gi|238700085|gb|EEP92827.1| Type II secretion system protein [Yersinia kristensenii ATCC 33638]
          Length = 365

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 50/165 (30%), Gaps = 8/165 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
           +        +   ++AGLP+   + ++  +    P +     + +    G SLSE+I+  
Sbjct: 25  ERLITVTRQLATLLQAGLPLVSCLQLLAKEMDSLPWQCLLLEISQQVSQGQSLSEAIAHY 84

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P          +    +L GNL +    L +    ++ +  KV            I
Sbjct: 85  PHIFPQLYPP-----VIAMGELTGNLEQCCTQLVQHQEQQQKLHKKVLKALKYPAFVCVI 139

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIG 175
              +   +   V                     LL ++A     G
Sbjct: 140 ALVVSIIMLVFVLPEFAQIYQSFDTPLPVLTATLLLISAFLTAYG 184


>gi|312883759|ref|ZP_07743478.1| Flp pilus assembly protein TadC [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368508|gb|EFP96041.1| Flp pilus assembly protein TadC [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 284

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 55/141 (39%), Gaps = 3/141 (2%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSL 65
             +     P+ALD++V  V +G  +      +  +    S  +  E+        +  S 
Sbjct: 131 RQEIAKHIPDALDLMVVCVSSGQNLEATFNTVGQEMKSISPSLSREWLVTSTEMAVLDSP 190

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             +++ +   + L E++     +S   + G  ++EAL  ++   R    ++ +     + 
Sbjct: 191 QVALTNLDARLALPEINNMIATMSQALKFGAPMAEALKLIASDSRQYHMLELEEWVGKIP 250

Query: 126 AKASAWIIGSLPFCVSTLVYF 146
           AK S  ++  +   V  ++  
Sbjct: 251 AKMSFPLVVFIMLPVVVIIVA 271


>gi|307726380|ref|YP_003909593.1| type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1003]
 gi|307586905|gb|ADN60302.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1003]
          Length = 318

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 68/152 (44%), Gaps = 4/152 (2%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSES 68
            ++ FP+ALD++   V AGL +  A+  + G+       V SE + ++     G +  ++
Sbjct: 165 IVEGFPDALDLLTVCVEAGLGMDAALMRVAGEIELASPEVASELQLMLLELRSGFTKEKA 224

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME-AK 127
           +        ++++  F++++    + G ++  +L  +S  LR R+ M+A+ +A  +    
Sbjct: 225 LRNFALRTGVEDIDTFASMLVQADRFGTSIGASLRVMSDTLRTRRRMRAEERAAKIALKL 284

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159
               I    P  ++ L+         VL+   
Sbjct: 285 LFPLIFCIFPALMTVLMGPAFIHIYRVLLPTL 316


>gi|238893137|ref|YP_002917871.1| pullulanase-specific type II secretion system component F
           [Klebsiella pneumoniae NTUH-K2044]
 gi|238545453|dbj|BAH61804.1| pullulanase-specific type II secretion system component F
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 404

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/143 (11%), Positives = 40/143 (27%), Gaps = 7/143 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           D       +   V AG+P+  A+  +  Q          R +        L         
Sbjct: 65  DLALLTRQLATLVAAGIPLEKALDAVAQQCE----KPSLRTLMAGVRSKVLEGHSLAEAM 120

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                        +    +  G+L   L  L+     R+ ++A++    +       +  
Sbjct: 121 RAYPACFDGLFCAMVAAGETSGHLDGVLNRLADYTEQRQQLRARLLQAMIYPI---VLTL 177

Query: 135 SLPFCVSTLVYFTSPGYMNVLIN 157
                ++ L+    P  +   ++
Sbjct: 178 VAISVIAILLSTVVPKVVEQFVH 200


>gi|213051996|ref|ZP_03344874.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 224

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q          R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P          +    +L G L+E    L+R  + ++ +   V+           
Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPA---I 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183
           I+      V  +++F  P +  +  +      LL      +   G     L++
Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGPAWGWLIL 221


>gi|300931769|ref|ZP_07147069.1| type II secretion system F domain protein [Escherichia coli MS
           187-1]
 gi|300460429|gb|EFK23922.1| type II secretion system F domain protein [Escherichia coli MS
           187-1]
          Length = 400

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/182 (11%), Positives = 54/182 (29%), Gaps = 22/182 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHNLEQGIAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +     +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLM 235

Query: 180 RL 181
           R 
Sbjct: 236 RR 237


>gi|242238913|ref|YP_002987094.1| general secretion pathway protein F [Dickeya dadantii Ech703]
 gi|242130970|gb|ACS85272.1| general secretion pathway protein F [Dickeya dadantii Ech703]
          Length = 408

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 10/160 (6%)

Query: 7   KRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLS 64
           +R  +    D       +   V A LP+ +A+  +  QS    +R+    V      G S
Sbjct: 60  RRAHRISASDLALLTRQLATLVAAALPLEEALDAVARQSEKPRLRALMAAVRAKVVEGHS 119

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L+E++                  +    +  G+L   L  L+     R+ M++++Q   +
Sbjct: 120 LAEAMGNFPNS-----FERLYCAMVAAGEASGHLDAVLNRLADYTEQRQQMRSRIQQAMI 174

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
                  +       VS L+    P  +   I+  +   L
Sbjct: 175 YP---CVLTLVAVAVVSILLSAVVPKVVEQFIHMKQALPL 211


>gi|52841753|ref|YP_095552.1| (type IV) pilus assembly protein PilC [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52628864|gb|AAU27605.1| (type IV) pilus assembly protein PilC [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 406

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/187 (12%), Positives = 57/187 (30%), Gaps = 14/187 (7%)

Query: 2   KHLIKKRTAKFLD--------DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEF 52
             ++KKR   F          D       +   + +G+P+  A  ++   QS+  ++   
Sbjct: 47  NKVVKKRKPLFDRKNKKITQADITVFSRQLATMIESGIPLVQAFDIVAKGQSNKRLKDLI 106

Query: 53  RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112
             +      GL+L+ES+ +          +     +    +  G+L   L  ++      
Sbjct: 107 ETIKHDIETGLTLAESLIKHPL-----YFNELFCNLVDAGEKSGSLDIMLDKVATYKEKI 161

Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
           + +K K++       A   +   +   +   V             D        +  +  
Sbjct: 162 EIIKKKIKKALTYPIAVMVVALLVTAGLLIYVVPQFESLFKGFGADLPAMTRAVITMSEF 221

Query: 173 LIGIMVM 179
           +     +
Sbjct: 222 MQAYWYI 228



 Score = 40.1 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/136 (10%), Positives = 41/136 (30%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRM 72
                    +  +  AGLP+ +A+  + G + + +      ++ E    G  +  ++   
Sbjct: 271 AAIARFARTLSITFAAGLPLVEALKSVAGATGNIIYAKATDKIREEVATGQQMFTAMEN- 329

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L + L+ ++    +  N      +  +E    + +
Sbjct: 330 -----THLFPNMVIQMVAIGEESGALEKMLSKVADFYEEEVNNAVDALSSLLEPIIMSIL 384

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V  +     
Sbjct: 385 GILVGGLVVAMYLPIF 400


>gi|218456567|gb|ACK77478.1| type IV pilin assembly protein [Vibrio vulnificus]
          Length = 408

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/154 (10%), Positives = 45/154 (29%), Gaps = 9/154 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +  G+P+  ++ ++        ++S    V +    G  LS+++   
Sbjct: 68  KDITLLTRQLATMLTTGVPILQSLKLVADNHRKAEMKSILASVSKAVEAGTPLSKALRSA 127

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                  +       +    +  GNL +    L+      + ++AKV    +       +
Sbjct: 128 S-----PQFDGIYVDLVATGEQSGNLDQVFERLAFYREKNEQLRAKVVKALIYP---CMV 179

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
           +         ++    P +  +            
Sbjct: 180 VLVALGVSYLMLTKVIPEFRKMFTGFGAELPWFT 213



 Score = 35.9 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/136 (8%), Positives = 37/136 (27%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
                    +  S  AG+P+  ++      + +   +     V      G+ +  ++   
Sbjct: 272 AAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAAGMPMYIAMRN- 330

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          + +  +  G + + L  ++ I     +         +E     ++
Sbjct: 331 -----SLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFL 385

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V+ +     
Sbjct: 386 GVVVGGLVTAMYLPIF 401


>gi|167628390|ref|YP_001678889.1| type ii secretion system f domain protein [Heliobacterium
           modesticaldum Ice1]
 gi|167591130|gb|ABZ82878.1| type ii secretion system f domain protein [Heliobacterium
           modesticaldum Ice1]
          Length = 408

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 52/169 (30%), Gaps = 8/169 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRM 72
                    +   V AG+P+  +++++  +     ++   ++V      G +L  ++ + 
Sbjct: 69  RQLSGFCRQLAALVDAGIPMCTSLSMVARRLRPPALQRAAQQVALALSQGETLISALEQ- 127

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    + GG L ++L  L+        +  K++A  +        
Sbjct: 128 ----QRHVFPELFVRLVETGEAGGVLDQSLHRLADHYDKESAITRKIRAALLYPALVLAT 183

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI--GIMVM 179
            G         V       +  L           +A A  +   G+ +M
Sbjct: 184 AGGSTVFFFLYVIPAYSALLTSLGMGLPEITRFVLALAKWIGDYGLWMM 232



 Score = 35.1 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 14/136 (10%), Positives = 36/136 (26%), Gaps = 5/136 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                     +   V +G+P+  A+A++   +     +E  R +        + +     
Sbjct: 271 RAAIARVSRSLSILVGSGVPIIQALAIVEKVALYRSLAEAVRGVR-----SGVGKGHPLH 325

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L   +       +       + +E      +
Sbjct: 326 QMMERSPLFPPEFVHLVYIGEESGALDVLLEKTAEYFEAEVDGAVHRLMILLEPMLLFLM 385

Query: 133 IGSLPFCVSTLVYFTS 148
            G + F   +L+    
Sbjct: 386 AGVVGFLALSLLMPLF 401


>gi|323495863|ref|ZP_08100931.1| type IV pilin biogenesis protein PilC [Vibrio sinaloensis DSM
           21326]
 gi|323319079|gb|EGA72022.1| type IV pilin biogenesis protein PilC [Vibrio sinaloensis DSM
           21326]
          Length = 408

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 59/182 (32%), Gaps = 8/182 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +  + +        D       +   +  G+P+  A+ ++        ++S   ++++  
Sbjct: 55  ISFIKRATHRVKRKDITILTRQLATMLVTGVPLIQALKLVADNHRKAEMKSILAQIVKGV 114

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G  LS+S+    ++            +    +  GNL E    ++      + ++AKV
Sbjct: 115 ESGTPLSKSMRTASQH-----FDSLYIDLVTSGEQSGNLPEVFERIATYREKSEQLRAKV 169

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIM 177
               +          S+ + + T+V             +       +L ++      G  
Sbjct: 170 IKALIYPSMVMLTALSVTYLMLTVVIPEFESMFKGFGAELPWFTQQVLALSHWVQDYGAF 229

Query: 178 VM 179
           V+
Sbjct: 230 VI 231



 Score = 37.0 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/136 (8%), Positives = 38/136 (27%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
                    +  S  AG+P+  ++      ++    +    +V      G+ +  ++   
Sbjct: 272 AAIAKFSRTLATSFSAGIPILSSLKTSAKTANSVHYQHAIDQVYSDTAAGMPMYIAMRN- 330

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          + +  +  G+L + L  ++ I     +         +E     ++
Sbjct: 331 -----SDSFPEMVLQMVMIGEESGSLDDMLHKVATIYEFEIDNTVDNLGKILEPMIIIFL 385

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V  +     
Sbjct: 386 GVVVGGLVIAMYLPIF 401


>gi|90580162|ref|ZP_01235969.1| putative MSHA biogenesis protein MshG [Vibrio angustum S14]
 gi|90438464|gb|EAS63648.1| putative MSHA biogenesis protein MshG [Vibrio angustum S14]
          Length = 408

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/171 (9%), Positives = 44/171 (25%), Gaps = 9/171 (5%)

Query: 12  FLDDFPN-----ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           F    P          +    +AG+P+  A   +   +S P+       +          
Sbjct: 60  FQAQLPLEVLVIFCRQLYSLTKAGVPLLRAFKGLSQSASHPLLKTTLEALTLDLTNGR-- 117

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
                +      +  S     +    +  G L + L  L+       N + ++++     
Sbjct: 118 --ALSVAMQQHPRVFSRLFISMIHVGENTGRLDQVLLQLANYYEQEMNTRRQIKSAMRYP 175

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
                 I      ++T V        +    +      + +  +   +   
Sbjct: 176 TFVLTAIVIAMGILNTKVIPQFASMFSRFGVELPWPTRVLIGTSNFFVHYW 226



 Score = 42.8 bits (99), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/135 (8%), Positives = 31/135 (22%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         +RAG+P++ A+ +      +              +   +    S  
Sbjct: 269 RAQMARFARTFSLMIRAGVPLNQAIQMAAESLGNRFLE-----NRLIEMKQGIEGGSSIS 323

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    +     +    +  G + E L  ++           K     +E      +
Sbjct: 324 RTATKSGVFTPLVLQMIAVGEETGQVDELLLEVADFYDREVEYDLKTLTARIEPIMLVVV 383

Query: 133 IGSLPFCVSTLVYFT 147
            G +      +    
Sbjct: 384 AGMVLLLALGIFLPM 398


>gi|94267866|ref|ZP_01291017.1| type II secretion system protein [delta proteobacterium MLMS-1]
 gi|93451826|gb|EAT02573.1| type II secretion system protein [delta proteobacterium MLMS-1]
          Length = 411

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 50/160 (31%), Gaps = 7/160 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           DD       +    +AG+P+   +  +   S +P  +E  R I T       S       
Sbjct: 71  DDLILFSRQMYSLTKAGVPLLRTMRGLAETSRNPELAEVLRAIGTDLE----SGHELSAA 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +        +    +  G + E  + L+   +  K+ + +++A          +I
Sbjct: 127 MGNHPRVFDDLYISMIRVGEDSGQMEEIFSRLALHYQQEKDTRDRIKAALRYPV---IVI 183

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
            ++   ++ +  F  P +  +         L       M 
Sbjct: 184 LAMVIALAVINVFVIPAFTGIFAGAGVELPLPTKILIGMS 223


>gi|222035036|emb|CAP77779.1| general secretion pathway protein F [Escherichia coli LF82]
 gi|312947878|gb|ADR28705.1| general secretory pathway component, cryptic [Escherichia coli
           O83:H1 str. NRG 857C]
          Length = 398

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 60/198 (30%), Gaps = 29/198 (14%)

Query: 5   IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLG 62
           +K R  +    +       +     A LP+ +++AVI  Q S++ +     +V      G
Sbjct: 49  VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNNRLADVLNQVRSAILEG 108

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             LS+++                  +    +  G L+  L  L+    +R+ +++K+   
Sbjct: 109 HPLSDALQHFPTL-----FDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQS 163

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND-------------------PRGHM 163
            +       +       V  L+    P      ++                      G  
Sbjct: 164 LIYP---CMLTTVAIVVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQHTGPT 220

Query: 164 LLGVAAAFMLIGIMVMRL 181
           LL       +   + ++ 
Sbjct: 221 LLATVFIVAVGFWLWLKR 238


>gi|217316906|gb|ACK37864.1| PilC [Vibrio vulnificus]
          Length = 408

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/154 (10%), Positives = 45/154 (29%), Gaps = 9/154 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +  G+P+  ++ ++        ++S    V +    G  LS+++   
Sbjct: 68  KDITLLTRQLATMLTTGVPILQSLKLVADNHRKAEMKSILASVSKAVEAGTPLSKALRSA 127

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                  +       +    +  GNL +    L+      + ++AKV    +       +
Sbjct: 128 S-----PQFDGIYVDLVATGEQSGNLDQVFERLAFYREKNEQLRAKVVKALIYP---CMV 179

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
           +         ++    P +  +            
Sbjct: 180 VLVALGVSYLMLTKVIPEFRKMFTGFGAELPWFT 213



 Score = 35.9 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/136 (8%), Positives = 37/136 (27%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
                    +  S  AG+P+  ++      + +   +     V      G+ +  ++   
Sbjct: 272 AAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAAGMPMYIAMRN- 330

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          + +  +  G + + L  ++ I     +         +E     ++
Sbjct: 331 -----SLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFL 385

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V+ +     
Sbjct: 386 GVVVGGLVTAMYLPIF 401


>gi|169834864|ref|YP_001715936.1| type II secretion system protein F [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169408971|gb|ACA57381.1| bacterial type II secretion system protein F domain [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 308

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 79/187 (42%), Gaps = 1/187 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++H    R  +    F NAL  I   +R    +S+A+  +    + P++ EF  +I+   
Sbjct: 120 IEHKGTNRVIEINKQFINALIDIGDYLRIDSNLSNAIKNVTPNIAYPLKGEFIYIIKEID 179

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
              ++ +++      +    V+ +   +   +    N+S+     S  +R R     K+ 
Sbjct: 180 SNTNILDTLKHFDYRVNSTVVNTWVDSMLFANDKRANVSDLCIKHSAKVRKRLTQNEKLN 239

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A     K  + +I  +   ++ +++ +SP + + L ++P G +L  +      +  + + 
Sbjct: 240 AKLSGLKFISIMIMIILLGMAFMMFGSSPEFKDFL-HEPFGRVLALITGISYTVTTVFIF 298

Query: 181 LMINFDV 187
             IN +V
Sbjct: 299 RKINKEV 305


>gi|294054977|ref|YP_003548635.1| Type II secretion system F domain protein [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614310|gb|ADE54465.1| Type II secretion system F domain protein [Coraliomargarita
           akajimensis DSM 45221]
          Length = 420

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 63/173 (36%), Gaps = 8/173 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRM 72
           ++       +   ++AGLP+  A+ V++ Q  +        ++ +    G S S+ +++ 
Sbjct: 78  EELTTFTRQLATLLQAGLPLLRALEVMIRQERNLRFKAVLEQIADQVKSGNSFSDGLAQH 137

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +             +    + GG L   L+ L+  +      K KV++  +       +
Sbjct: 138 PK-----VFDRLYINMIKAGEAGGVLDVVLSRLAGFMEKALKTKKKVKSAMVYPIVVVGV 192

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVMRLMI 183
             S+   +  +V        + +++         L +  +  + G  ++  ++
Sbjct: 193 AVSIVVLLMVVVVPKFQSIFDDMLDGKALPAPTQLVINISNFVKGNFIITAIL 245


>gi|217329821|ref|ZP_03445896.1| general secretion pathway protein F [Escherichia coli O157:H7 str.
           TW14588]
 gi|217317052|gb|EEC25485.1| general secretion pathway protein F [Escherichia coli O157:H7 str.
           TW14588]
          Length = 407

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 51/172 (29%), Gaps = 12/172 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             +       +   V A LP+ +A+  ++ QS  P +      +        L       
Sbjct: 66  SAELALLTRQLATLVAASLPLEEALDALLRQSEKPRQRNLIAAVR----TKVLEGHSLAA 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              M           +    +  G L   L+ L+     R+ M+ ++    +       +
Sbjct: 122 AMGMFPGTFERLYCAMVAAGETSGRLDVVLSRLADYTEQRQIMRNRLLQALLYP---CVL 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIND-----PRGHMLLGVAAAFMLIGIMVM 179
                  ++ L+    P  +   I+          +L+G A      G  ++
Sbjct: 179 TLVAVGVIAILLTAVVPKVVEQFIHMKQTLPLSTRVLMGAAEVSQTWGPWLL 230


>gi|331684969|ref|ZP_08385555.1| general secretion pathway protein F [Escherichia coli H299]
 gi|331077340|gb|EGI48552.1| general secretion pathway protein F [Escherichia coli H299]
          Length = 398

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 60/198 (30%), Gaps = 29/198 (14%)

Query: 5   IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62
           +K R  +    +       +     A LP+ +++AVI  QSS+  +     +V      G
Sbjct: 49  VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLADVLNQVRSAILEG 108

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             LS+++                  +    +  G L+  L  L+    +R+ +++K+   
Sbjct: 109 HPLSDALQHFPTL-----FDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQS 163

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND-------------------PRGHM 163
            +       +       V  L+    P      ++                      G  
Sbjct: 164 LIYP---CMLTAVAIVVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQHTGPT 220

Query: 164 LLGVAAAFMLIGIMVMRL 181
           LL       +   + ++ 
Sbjct: 221 LLATVFIVAVGFWLWLKR 238


>gi|154151943|ref|YP_001405561.1| type II secretion system protein [Candidatus Methanoregula boonei
           6A8]
 gi|154000495|gb|ABS56918.1| type II secretion system protein [Methanoregula boonei 6A8]
          Length = 300

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 67/186 (36%), Gaps = 3/186 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++ I+ +        P AL  +     +G    D +  I  +    + +EFR+V+    
Sbjct: 108 LQNQIENKKRDIDTQIPYALAFMSILASSGATPLDIIRRIAREDYGQISNEFRKVLFRVD 167

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           +    +  +++ +V+  P          I+     GG L   L   S+ L   +    K 
Sbjct: 168 ILGEDVVTAMNGLVQNTPSDLFRDICIDITNIIYGGGGLKSYLETKSKELMAIRRQTYKE 227

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL--GVAAAFMLIGIM 177
              S+      ++ G +      ++     G + + +     H +    +     LI ++
Sbjct: 228 FVESLAVFGEGYLGGVVMTITLAILGVVISGALGIQLGPFSAHDMFNYLIYLLIPLINVV 287

Query: 178 VMRLMI 183
            ++++ 
Sbjct: 288 FLQMLA 293


>gi|126437755|ref|YP_001073446.1| type II secretion system protein [Mycobacterium sp. JLS]
 gi|126237555|gb|ABO00956.1| type II secretion system protein [Mycobacterium sp. JLS]
          Length = 262

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 61/172 (35%), Gaps = 1/172 (0%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            +   +AL+++V  +R G     A     G+    V    R V     LG  ++  +   
Sbjct: 86  SESLQSALEVLVGELRVGAHPVAAFETAAGEIDGQVADSLRAVAARARLGADVAAGLHDT 145

Query: 73  VRYMPLQE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
            R   L       +    +    G +++  +    R + +R+   ++V A    A+A+A 
Sbjct: 146 ARKSSLASQWDRIAVCWQLAQTHGLSIAALMQTAQRDIAERQRFSSRVSAGMAGARATAA 205

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           ++  LP     L          +L+    G  LL +       G++    + 
Sbjct: 206 VLAGLPVLGIGLGQMIGADPGRLLLGGGAGGWLLLIGVTLSCAGLLWSDRIT 257


>gi|10955270|ref|NP_052611.1| EtpF [Escherichia coli O157:H7 str. Sakai]
 gi|75994481|ref|YP_325595.1| type II secretion protein [Escherichia coli O157:H7 EDL933]
 gi|149930766|ref|YP_001294688.1| w0024 [Escherichia coli]
 gi|168750721|ref|ZP_02775743.1| general secretion pathway protein F [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757327|ref|ZP_02782334.1| general secretion pathway protein F [Escherichia coli O157:H7 str.
           EC4401]
 gi|168763013|ref|ZP_02788020.1| general secretion pathway protein F [Escherichia coli O157:H7 str.
           EC4501]
 gi|168769209|ref|ZP_02794216.1| general secretion pathway protein F [Escherichia coli O157:H7 str.
           EC4486]
 gi|168769319|ref|ZP_02794326.1| general secretion pathway protein F [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776692|ref|ZP_02801699.1| general secretion pathway protein F [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783066|ref|ZP_02808073.1| general secretion pathway protein F [Escherichia coli O157:H7 str.
           EC4076]
 gi|168789908|ref|ZP_02814915.1| general secretion pathway protein F [Escherichia coli O157:H7 str.
           EC869]
 gi|168802554|ref|ZP_02827561.1| general secretion pathway protein F [Escherichia coli O157:H7 str.
           EC508]
 gi|195940094|ref|ZP_03085476.1| EtpF [Escherichia coli O157:H7 str. EC4024]
 gi|208811384|ref|ZP_03253144.1| general secretion pathway protein F [Escherichia coli O157:H7 str.
           EC4206]
 gi|208817373|ref|ZP_03258402.1| general secretion pathway protein F [Escherichia coli O157:H7 str.
           EC4045]
 gi|208823340|ref|ZP_03263657.1| general secretion pathway protein F [Escherichia coli O157:H7 str.
           EC4042]
 gi|209395613|ref|YP_002268500.1| general secretion pathway protein F [Escherichia coli O157:H7 str.
           EC4115]
 gi|254667453|ref|YP_003082139.1| type II secretion protein [Escherichia coli O157:H7 str. TW14359]
 gi|261225637|ref|ZP_05939918.1| type II secretion protein [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257908|ref|ZP_05950441.1| type II secretion protein [Escherichia coli O157:H7 str. FRIK966]
 gi|37695754|gb|AAR00416.1|AF401292_17 w0024 [Escherichia coli]
 gi|2598403|emb|CAA70957.1| etpF [Escherichia coli]
 gi|3337002|dbj|BAA31761.1| Type II secretion pathway related protein [Escherichia coli O157:H7
           str. Sakai]
 gi|3822149|gb|AAC70103.1| type II secretion protein [Escherichia coli O157:H7]
 gi|187767918|gb|EDU31762.1| general secretion pathway protein F [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015149|gb|EDU53271.1| general secretion pathway protein F [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999539|gb|EDU68525.1| general secretion pathway protein F [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355667|gb|EDU74086.1| general secretion pathway protein F [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361624|gb|EDU80043.1| general secretion pathway protein F [Escherichia coli O157:H7 str.
           EC4486]
 gi|189361688|gb|EDU80107.1| general secretion pathway protein F [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366740|gb|EDU85156.1| general secretion pathway protein F [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370519|gb|EDU88935.1| general secretion pathway protein F [Escherichia coli O157:H7 str.
           EC869]
 gi|189375467|gb|EDU93883.1| general secretion pathway protein F [Escherichia coli O157:H7 str.
           EC508]
 gi|208730014|gb|EDZ79231.1| general secretion pathway protein F [Escherichia coli O157:H7 str.
           EC4206]
 gi|208730550|gb|EDZ79249.1| general secretion pathway protein F [Escherichia coli O157:H7 str.
           EC4045]
 gi|208736935|gb|EDZ84620.1| general secretion pathway protein F [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157068|gb|ACI34502.1| general secretion pathway protein F [Escherichia coli O157:H7 str.
           EC4115]
 gi|254595805|gb|ACT75165.1| type II secretion protein [Escherichia coli O157:H7 str. TW14359]
 gi|326337156|gb|EGD60992.1| General secretion pathway protein F [Escherichia coli O157:H7 str.
           1125]
 gi|326347654|gb|EGD71372.1| General secretion pathway protein F [Escherichia coli O157:H7 str.
           1044]
          Length = 407

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 51/172 (29%), Gaps = 12/172 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             +       +   V A LP+ +A+  ++ QS  P +      +        L       
Sbjct: 66  SAELALLTRQLATLVAASLPLEEALDALLRQSEKPRQRNLIAAVR----TKVLEGHSLAA 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              M           +    +  G L   L+ L+     R+ M+ ++    +       +
Sbjct: 122 AMGMFPGTFERLYCAMVAAGETSGRLDVVLSRLADYTEQRQIMRNRLLQALLYP---CVL 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIND-----PRGHMLLGVAAAFMLIGIMVM 179
                  ++ L+    P  +   I+          +L+G A      G  ++
Sbjct: 179 TLVAVGVIAILLTAVVPKVVEQFIHMKQTLPLSTRVLMGAAEVSQTWGPWLL 230


>gi|153829296|ref|ZP_01981963.1| MSHA biogenesis protein MshG [Vibrio cholerae 623-39]
 gi|148875196|gb|EDL73331.1| MSHA biogenesis protein MshG [Vibrio cholerae 623-39]
          Length = 407

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/165 (9%), Positives = 43/165 (26%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72
           +        +    +AG+P+  ++  +     +         V      G +LS      
Sbjct: 67  EVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS-----A 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +     S     +    +  G L +AL  L+         + +++            
Sbjct: 122 SMQLHSAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITF 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +    F ++  V        +    +      + +  +   +   
Sbjct: 182 VLLAMFVLNVKVIPQFTSMFSRFGVELPLPTRILITTSDFFVNYW 226



 Score = 41.3 bits (95), Expect = 0.066,   Method: Composition-based stats.
 Identities = 10/135 (7%), Positives = 35/135 (25%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         + AG+P++ ++A+      +    +         +   +   ++  
Sbjct: 269 RAQLSRFARTFSLMLSAGVPLNQSLALSAEAIDNKFLEQRIL-----EMKSQIESGVAVS 323

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +     +     +    +  G + E L  +S       +   K     +E     ++
Sbjct: 324 ATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLVFV 383

Query: 133 IGSLPFCVSTLVYFT 147
              +      +    
Sbjct: 384 AAMVLVLALGIFLPM 398


>gi|328474168|gb|EGF44973.1| type IV pilin biogenesis protein PilC [Vibrio parahaemolyticus
           10329]
          Length = 407

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 46/154 (29%), Gaps = 9/154 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       I   +  G+P+  A+ ++        ++S    V      G  +S+++   
Sbjct: 67  KDITVFTRQISTMLVTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAMRTA 126

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +            +    +  GNL+E    L+      + ++AKV    +       +
Sbjct: 127 SNHFDPLYTD-----LIATGEQSGNLAEVFERLATYREKNEQLRAKVIKALIYPA---MV 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
           I         ++    P +  + +          
Sbjct: 179 ILVALGVSFIMLTKVIPEFEKMFVGFGAELPWFT 212



 Score = 35.9 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/136 (9%), Positives = 37/136 (27%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72
                    +  S  AG+P+  ++      S +         V      G+ +  ++   
Sbjct: 271 AAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNMHYQLAIEEVYRDTAAGMPMYVAMRN- 329

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          + +  +  G L + L  ++ I     +      +  +E     ++
Sbjct: 330 -----CNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFL 384

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V+ +     
Sbjct: 385 GIVVGGLVTAMYLPIF 400


>gi|300788924|ref|YP_003769215.1| type II secretion system protein [Amycolatopsis mediterranei U32]
 gi|299798438|gb|ADJ48813.1| type II secretion system protein [Amycolatopsis mediterranei U32]
          Length = 283

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 65/181 (35%), Gaps = 3/181 (1%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAG-LPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
            L ++R  +      + L  +   +RAG   +  A+       +  +R+E   + +    
Sbjct: 90  KLAEQRIERLE-ALEDWLRGLADVLRAGNAGLVGALLDSANDVAPAIRAEVTTLGQRLR- 147

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
              ++ ++ +    +  Q     +  + V  Q G   +E L  L+R +      +   + 
Sbjct: 148 TWDVAGALLQFADDVDDQIGDAAAAGLCVAHQQGTGTAELLTTLARQVAADVAARRGAET 207

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
                +++A I+  L   +              + +   G ++L V    + + ++ +R 
Sbjct: 208 ERARRRSAARILLGLWAVMFVGFAAFGSDSYTSVYSSVGGQLVLAVVLGVVGVAVVWLRR 267

Query: 182 M 182
           +
Sbjct: 268 L 268


>gi|257455015|ref|ZP_05620260.1| general secretion pathway protein F [Enhydrobacter aerosaccus SK60]
 gi|257447587|gb|EEV22585.1| general secretion pathway protein F [Enhydrobacter aerosaccus SK60]
          Length = 401

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 50/166 (30%), Gaps = 7/166 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   + A +P+  A+  I  QS    V++    V      G SL+ ++    
Sbjct: 64  DLALITRQLSVLLAASIPIEQALQAIARQSEKPHVKALMHGVRAKVLEGYSLASALQDSG 123

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                              +  G+L   L  L+    +R  M+ KVQ   +       + 
Sbjct: 124 N------FPAIYIATIAAGERSGHLDLILNQLADYTENRFAMQKKVQGAMVYPIILLMMA 177

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            ++   + + V                    + +A + +L     +
Sbjct: 178 VAVVVGLMSFVVPKIVKVFEQSDQALPWITQVVLALSNLLTQWWWL 223


>gi|110800691|ref|YP_696959.1| type II secretion system protein F [Clostridium perfringens ATCC
           13124]
 gi|168211644|ref|ZP_02637269.1| bacterial type II secretion system protein F [Clostridium
           perfringens B str. ATCC 3626]
 gi|110675338|gb|ABG84325.1| bacterial type II secretion system protein F [Clostridium
           perfringens ATCC 13124]
 gi|170710395|gb|EDT22577.1| bacterial type II secretion system protein F [Clostridium
           perfringens B str. ATCC 3626]
          Length = 401

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/152 (11%), Positives = 50/152 (32%), Gaps = 9/152 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D           + +GL +  A+ +++ Q     +R     V      G +L+ S+ + 
Sbjct: 62  KDIAVFCRQFYVMLDSGLSIGKALNILIEQCEKPKLREALIGVNGELKRGETLASSMRK- 120

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                        T +    +  GNL   L  ++        ++ K+++  +       +
Sbjct: 121 ----RKDVFPNLLTSMIDAGERSGNLDIILKRMAEYYEKETKIRGKIKSAMIYPI---VL 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
                  ++ ++ F  P ++ +   +     +
Sbjct: 174 GVVAIIAITFILTFVMPTFVQMFEENNVDLPM 205



 Score = 38.9 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 43/134 (32%), Gaps = 7/134 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77
               +     +G+ +  ++ ++     + +   E  +V E    G  L +SI      M 
Sbjct: 270 FTRTMGIVSSSGMSLVTSIEIVASVVGNKIAEKELLKVKEKVLKGEGLGDSI------MN 323

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           ++        +    +  G+L   L   +    D    + K     +E      +   + 
Sbjct: 324 IKIFPPMLASMVKIGEEAGSLDSILDKTADFYDDELEREIKTATALIEPSMIVLMGIIIG 383

Query: 138 FCVSTLVYFTSPGY 151
           F + +++      Y
Sbjct: 384 FLLISILTPMFKMY 397


>gi|295837424|ref|ZP_06824357.1| integral membrane protein [Streptomyces sp. SPB74]
 gi|295826519|gb|EDY42992.2| integral membrane protein [Streptomyces sp. SPB74]
          Length = 305

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 64/166 (38%), Gaps = 1/166 (0%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
              ++   VRAG   ++A+A  V  +   +      ++     G  +  ++    R    
Sbjct: 131 LCGLLAGEVRAGNRPAEALAHAV-SACGELGHGRADILAAARFGGDVPAALRVAAREPGA 189

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           + +   +    V    G  L+  L  L R L   ++ +A ++A    A+A+A ++ +LP 
Sbjct: 190 EGLVGLAACWRVALDRGAGLAVGLERLERALLADRDQRADLRAQLSGARATAALLAALPL 249

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
               L        +NVL     G + L + +A    G+     ++ 
Sbjct: 250 LGLLLGSAVGAAPLNVLFGSVPGFVCLVLGSALEAAGVWWCLWLVR 295


>gi|182625510|ref|ZP_02953281.1| bacterial type II secretion system protein F [Clostridium
           perfringens D str. JGS1721]
 gi|177909198|gb|EDT71663.1| bacterial type II secretion system protein F [Clostridium
           perfringens D str. JGS1721]
          Length = 401

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/152 (11%), Positives = 49/152 (32%), Gaps = 9/152 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D           + +GL +  A+ +++ Q     +R     V      G +L+ S+ + 
Sbjct: 62  KDIAVFCRQFYVMLDSGLSIGKALNILIEQCEKPKLREALIGVNGELKRGETLASSMRK- 120

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  GNL   L  ++        ++ K+++  +       +
Sbjct: 121 ----RKDVFPNLLISMIDAGERSGNLDIILKRMAEYYEKETKIRGKIKSAMIYPI---VL 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
                  ++ ++ F  P ++ +   +     +
Sbjct: 174 GVVAIIAITFILTFVMPTFVQMFEENNVDLPM 205



 Score = 38.9 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 43/134 (32%), Gaps = 7/134 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77
               +     +G+ +  ++ ++     + +   E  +V E    G  L +SI      M 
Sbjct: 270 FTRTMGIVSSSGMSLVTSIEIVASVVGNKIAEKELLKVKEKVLKGEGLGDSI------MN 323

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           ++        +    +  G+L   L   +    D    + K     +E      +   + 
Sbjct: 324 IKIFPPMLASMVKIGEEAGSLDSILDKTADFYDDELEREIKTATALIEPSMIVLMGIIIG 383

Query: 138 FCVSTLVYFTSPGY 151
           F + +++      Y
Sbjct: 384 FLLISILTPMFKMY 397


>gi|242399928|ref|YP_002995353.1| Bacterial type II secretion system protein F domain, putative
           [Thermococcus sibiricus MM 739]
 gi|242266322|gb|ACS91004.1| Bacterial type II secretion system protein F domain, putative
           [Thermococcus sibiricus MM 739]
          Length = 308

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 66/176 (37%), Gaps = 4/176 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
             + K+     ++ P+A   I  S+RAG+  S+A+          +  EF+R +     G
Sbjct: 85  WKLAKKIEDMENNIPDAFFYIASSLRAGVSFSEALEEASTARFGALTDEFKRTVSEIKRG 144

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQA 121
            S  E++           + + ST+I +++   G  +++ L  ++  +R+   +K + +A
Sbjct: 145 RSTYEALKAFALRNRRSIIIYRSTMIILEAYERGAPMADVLVAVANDVREILRIKKERKA 204

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
            +        I           +       +  +     G  L   A   +L+  +
Sbjct: 205 STGMQAMFFIIASGFLGPAILGIV---SQLIGSMNTPEIGLNLPVDAIYNVLLAFV 257


>gi|319788658|ref|YP_004148133.1| type II secretion system F domain [Pseudoxanthomonas suwonensis
           11-1]
 gi|317467170|gb|ADV28902.1| Type II secretion system F domain [Pseudoxanthomonas suwonensis
           11-1]
          Length = 296

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 1/135 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQ 59
           +    K R    + D P  LD I  SV AGL V+  +   +    +  +  EF R++   
Sbjct: 138 LGERRKLRHKAVVRDLPVYLDFITMSVEAGLNVTGGIEQAVAKGPAGALSQEFSRMLRDI 197

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             GL  +E++ RM   M + +++ F++ +    ++G NLS+ L   +   R+ + ++A+ 
Sbjct: 198 RAGLPRAEALKRMSERMDISQITNFTSALIQADKVGANLSDTLRAQANQRREERFLRAEK 257

Query: 120 QALSMEAKASAWIIG 134
            AL    K    ++ 
Sbjct: 258 LALEAPVKMMLPLVM 272


>gi|313819747|gb|EFS57461.1| type II secretion system F domain protein [Propionibacterium acnes
           HL046PA2]
          Length = 288

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 61/169 (36%), Gaps = 1/169 (0%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
            ++     +  +   +  G  +  AV +   ++   +     +++      +   E+  R
Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +   E       +++ +      S  L  ++  ++ R  +  +V+A   + + S  
Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            I  +   +   +      ++  L   P G +L+ VA    +I ++ M 
Sbjct: 224 QITLVTIAMFGGLLVIGRSFLAPL-ATPPGQVLVAVAVVMYVIALVQMY 271


>gi|331674828|ref|ZP_08375585.1| general secretion pathway protein F [Escherichia coli TA280]
 gi|331067737|gb|EGI39135.1| general secretion pathway protein F [Escherichia coli TA280]
          Length = 398

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 60/198 (30%), Gaps = 29/198 (14%)

Query: 5   IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62
           +K R  +    +       +     A LP+ +++AVI  QSS+  +     +V      G
Sbjct: 49  VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLADVLNQVRSAILEG 108

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             LS+++                  +    +  G L+  L  L+    +R+ +++K+   
Sbjct: 109 HPLSDALQHFPTL-----FDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQS 163

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND-------------------PRGHM 163
            +       +       V  L+    P      ++                      G  
Sbjct: 164 LIYP---CMLTAVAIVVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQHTGPT 220

Query: 164 LLGVAAAFMLIGIMVMRL 181
           LL       +   + ++ 
Sbjct: 221 LLATVFIVAVGFWLWLKR 238


>gi|119475557|ref|ZP_01615910.1| MSHA biogenesis protein MshG [marine gamma proteobacterium
           HTCC2143]
 gi|119451760|gb|EAW32993.1| MSHA biogenesis protein MshG [marine gamma proteobacterium
           HTCC2143]
          Length = 337

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/161 (10%), Positives = 45/161 (27%), Gaps = 4/161 (2%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   ++AG+ ++ A+  +   +++        V+      LS S            
Sbjct: 2   FARQLYSLIKAGVVLNRAIRGLAESTNNTRFR---NVLMEVEASLS-SGVNLSTSLAKHG 57

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    I    +  G L  A   L   L   K+ + ++   +         +G    
Sbjct: 58  DVFDSMFVNIVSVGENSGRLESAFHQLYAYLELEKDTRRRISTATRYPMFVLIALGIAIV 117

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            ++  V        +    D      + +  +   +   ++
Sbjct: 118 VLNIFVIPVFADLFSQFGADLPWATKILIGTSSFFVNHWML 158



 Score = 34.3 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 15/140 (10%), Positives = 41/140 (29%), Gaps = 6/140 (4%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                      +++G+P+  A+ +      +              +  S+    S +   
Sbjct: 202 LSRFSRSFSMMLKSGVPLIKALELSSMSVGNSYV-----AKNIGGMRNSIQRGESLLRSA 256

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
           +  +  +     +    +  G + E L  ++       +   K  A  +E    + I G 
Sbjct: 257 VQSKMFTPLVLQMLQVGEETGRVDEMLDEVAEFYEQEVDYDLKNLASYIEPVLISCIAGV 316

Query: 136 LPFCVSTLVYFTSPGYMNVL 155
           +      +        M+V+
Sbjct: 317 VMILALGIFLPMW-DMMSVM 335


>gi|110803628|ref|YP_699547.1| type II secretion system protein F [Clostridium perfringens SM101]
 gi|110684129|gb|ABG87499.1| bacterial type II secretion system protein F [Clostridium
           perfringens SM101]
          Length = 401

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 51/157 (32%), Gaps = 9/157 (5%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSE 67
               L D           + +GL +  A+ +++ Q   P   E    V      G +L+ 
Sbjct: 57  RKVKLKDIAIFCRQFYVMLDSGLSIGKALNILIEQGEKPKIREALIGVNGDLKRGETLAS 116

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           S+ +              T +    +  GNL   L  +S        ++ K+++  +   
Sbjct: 117 SMRK-----RKDVFPNLLTSMIDAGERSGNLDIILKRMSEYYEKETKIRGKIKSAMIYPI 171

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
               +       ++ ++ F  P ++ +   +     +
Sbjct: 172 ---VLGVVAIIAITFILTFVMPTFVQMFEENNVDLPM 205



 Score = 38.6 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/134 (11%), Positives = 43/134 (32%), Gaps = 7/134 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77
               +     +G+ +  ++ ++     + +   E  +V E    G  L +SI      M 
Sbjct: 270 FTRTMGIVSSSGMSLVTSLEIVASVVGNKIAEKELLKVKEKVLKGEGLGDSI------MK 323

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           ++        +    +  G+L   L   +    D    + +     +E      +   + 
Sbjct: 324 IKIFPPMLASMVKVGEEAGSLDSILDKTADFYDDELEREIQTATALIEPAMIVVMGIIIG 383

Query: 138 FCVSTLVYFTSPGY 151
           F + +++      Y
Sbjct: 384 FLLISILTPMFKMY 397


>gi|20808465|ref|NP_623636.1| hypothetical protein TTE2066 [Thermoanaerobacter tengcongensis MB4]
 gi|20517083|gb|AAM25240.1| hypothetical protein TTE2066 [Thermoanaerobacter tengcongensis MB4]
          Length = 248

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 54/152 (35%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           K+     ++ P  L+  +  +  G+PV + +  IV      ++   +  +     G+ LS
Sbjct: 96  KKRLMADNELPAILETFISGLSVGMPVENIMRYIVENKKGYMKEIIQEALHKADAGIPLS 155

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            S+         +       ++   S+    L+E L  L R + + +  +   +A  ++ 
Sbjct: 156 LSLEEAAEKSLNKYFQRAVKILIKTSETSQGLAEQLDELLRDIEEDRINEKTAKASVLDN 215

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158
             +  ++      +   V F      + +   
Sbjct: 216 VIAIPVLIGFFIPLIVFVIFPFIVSFSNIFGT 247


>gi|328952522|ref|YP_004369856.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
           DSM 11109]
 gi|328452846|gb|AEB08675.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
           DSM 11109]
          Length = 404

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 64/183 (34%), Gaps = 9/183 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ 59
           +     +R +    +     + +   ++AGLP+  ++  +    S   ++    +++   
Sbjct: 55  LSFRRGRRVS--SREVVLFTEELADLLKAGLPLDRSLQALKEVTSRSGMKEVINQILRDL 112

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G +LS+S+SR   + P          +    + GG L E+L+ LS  L+     ++ +
Sbjct: 113 QGGKTLSDSLSRHKAFSP------LYVSLIQAGETGGFLDESLSRLSDYLQTVSEFRSYL 166

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
               +     A +       +   V      +   +  +      + +  + M      +
Sbjct: 167 FTALIYPMILAGMGSLSLVLMLLYVVPRFESFFQEMGQELFWSTRMLLWISQMFRSYWWV 226

Query: 180 RLM 182
             +
Sbjct: 227 LAL 229


>gi|314932288|gb|EFS96119.1| type II secretion system F domain protein [Propionibacterium acnes
           HL067PA1]
          Length = 288

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 61/169 (36%), Gaps = 1/169 (0%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
            ++     +  +   +  G  +  AV +   ++   +     +++      +   E+  R
Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +   E       +++ +      S  L  ++  ++ R  +  +V+A   + + S  
Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            I  +   +   +      ++  L   P G +L+ VA    +I ++ M 
Sbjct: 224 QITLVTIAMFGGLLVIGRSFLAPL-ATPPGQVLVAVAVVMYVIALVQMY 271


>gi|254524287|ref|ZP_05136342.1| general secretion pathway protein F [Stenotrophomonas sp. SKA14]
 gi|219721878|gb|EED40403.1| general secretion pathway protein F [Stenotrophomonas sp. SKA14]
          Length = 399

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 59/167 (35%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           +   A   +   + A LP+  A++ ++ Q+    V      V      G  L+ +++   
Sbjct: 61  ELAWATRQLASLLAASLPLESALSAVIEQAERPHVAQALTAVRADVRAGQRLTVALAARP 120

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R  P          +    +  G+L+  +  L+  + +R  ++AKV    +   A + + 
Sbjct: 121 RDFPP-----IYRALVGAGEDSGDLARVMERLADYIEERNALQAKVLTAFIYPAAISLVS 175

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMV 178
            ++   + + V                    ++L  +A     G+ V
Sbjct: 176 VAIVIFLLSYVVPQVVTAFVQARQTLPMLTQVMLAASAFVRSWGVWV 222



 Score = 37.4 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 38/130 (29%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+P+  A+        +  +      V      G +L  ++        
Sbjct: 268 FASTLAILLDAGVPLLRALEAARQTLGNALLARCADDVSARVREGAALGAALKV------ 321

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +        +    +  G+L+  L   ++ +      +A      +E      + G + 
Sbjct: 322 QKVYPPILVHLVASGEKTGSLAPLLDRAAQTISREIERRAMALTALLEPTMILVMGGVVL 381

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 382 TIVLAVLMPI 391


>gi|323486356|ref|ZP_08091681.1| hypothetical protein HMPREF9474_03432 [Clostridium symbiosum
           WAL-14163]
 gi|323695020|ref|ZP_08109166.1| hypothetical protein HMPREF9475_04030 [Clostridium symbiosum
           WAL-14673]
 gi|323400338|gb|EGA92711.1| hypothetical protein HMPREF9474_03432 [Clostridium symbiosum
           WAL-14163]
 gi|323500916|gb|EGB16832.1| hypothetical protein HMPREF9475_04030 [Clostridium symbiosum
           WAL-14673]
          Length = 405

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 12/169 (7%), Positives = 43/169 (25%), Gaps = 4/169 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            D        V    +G+ +  A+ ++  Q+ + +  E  R                   
Sbjct: 64  RDMSVFCRQFVTLTESGISIVRAMEMLEEQTVNKLLKEAIRETRASVEKGD----TLAGS 119

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +        +    +  G LS +   ++        ++  ++   +     + + 
Sbjct: 120 MRHHEKVFPPMFVNLVQAGEEAGKLSLSFERMAAHYEKTAKLQNIIKKAMIYPIILSIVA 179

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
             +   +   +          +  +        V  +  +     + L+
Sbjct: 180 VIVIIVMLVYIVPMYSDMFVDMDAELPAITRAVVGLSNFMTRYWYIILI 228



 Score = 40.9 bits (94), Expect = 0.093,   Method: Composition-based stats.
 Identities = 14/117 (11%), Positives = 34/117 (29%), Gaps = 7/117 (5%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRY 75
                 +   + AG+P+ +A+ +      + V         E    G+ LS  +      
Sbjct: 270 AQFSRNLSTLLSAGVPIIEALEITANTMDNTVYRLAISDAREQVARGIQLSVPLQESG-- 327

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                       +    +  G L   L  ++    +      +  A ++E     ++
Sbjct: 328 ----VFPSMVYHMVGIGEETGGLDTMLDKVAEYYEEEVTAATEQAAAALEPLVIIFM 380


>gi|90416867|ref|ZP_01224796.1| general secretion pathway protein F [marine gamma proteobacterium
           HTCC2207]
 gi|90331214|gb|EAS46458.1| general secretion pathway protein F [marine gamma proteobacterium
           HTCC2207]
          Length = 402

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 63/165 (38%), Gaps = 8/165 (4%)

Query: 7   KRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +R A+  + D    L      + +GLP+ DA+ + + Q+      + RR++++    +  
Sbjct: 56  RREARVNNFDLSLLLQQQAILIESGLPLEDALRMTIEQAE---TEKQRRMLQSWRSEIIE 112

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             S S  +R  P +        ISV  + G  L + L  ++  L      +  +    + 
Sbjct: 113 GRSFSDALRRSPYKIPDSIVAGISVGEESGH-LHKVLMRIAEDLESSAENRKTISRAMIY 171

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
                 +I +    V+ ++ +  P    + ++  R   L+     
Sbjct: 172 PAT---LISTSIIVVAIMMVWVVPKITAIFMSSNRELPLITRIIV 213


>gi|107022598|ref|YP_620925.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
 gi|105892787|gb|ABF75952.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
          Length = 321

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 57/158 (36%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           ++     R      + P  +D++      GL +  ++ V+          +  E      
Sbjct: 158 VRRRATARRQSLAAELPLLVDMLRLLQGVGLSLDQSIQVVTHDFQTMLPVLSWELGVAQR 217

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+ R+      +++     ++    + GG + E L      LR+ +    
Sbjct: 218 QFAAGRTREQSLQRLTNSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREGRRATL 277

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + Q   +  K +  +I +L   +  L+    PG M VL
Sbjct: 278 REQIGRLTVKMTGVMIVTLLPAL--LIVTAGPGIMTVL 313


>gi|304412464|ref|ZP_07394070.1| Type II secretion system F domain protein [Shewanella baltica
           OS183]
 gi|307307123|ref|ZP_07586861.1| Type II secretion system F domain protein [Shewanella baltica
           BA175]
 gi|304349106|gb|EFM13518.1| Type II secretion system F domain protein [Shewanella baltica
           OS183]
 gi|306910362|gb|EFN40793.1| Type II secretion system F domain protein [Shewanella baltica
           BA175]
          Length = 423

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/172 (9%), Positives = 50/172 (29%), Gaps = 8/172 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73
           D       I   + AG+P+   + ++          E    ++     G+ LS++     
Sbjct: 83  DIAMMTRQIATMLAAGVPLVTTIELLGRGHEKAKMRELLANILSEIQSGIPLSDA----- 137

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +        +    +  G+L      ++      + +K+K++       A   + 
Sbjct: 138 MRPHRRYFDELYVDLVAAGEHSGSLDLVFDRVATYREKTEALKSKIKKAMFYPAAVVIVA 197

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183
             +   +   V             +      ++L ++        + +  ++
Sbjct: 198 ILVTTLLLLFVVPQFEDIFKGFGAELPAFTQLVLHISRGLQSSWYIFLAAIV 249


>gi|90406745|ref|ZP_01214938.1| Flp pilus assembly protein TadC [Psychromonas sp. CNPT3]
 gi|90312198|gb|EAS40290.1| Flp pilus assembly protein TadC [Psychromonas sp. CNPT3]
          Length = 288

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 65/155 (41%), Gaps = 5/155 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQH 60
             K+ T+      P+ALD++V  V +GL +      +  +       +  ++        
Sbjct: 130 RAKRITSNIALATPDALDLMVICVESGLTLEAMFGRVGQEMYQICPELSRQWLITEVELR 189

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           L    S ++  +     + E+      +S   + GG++++ L  ++   R ++ +  + +
Sbjct: 190 LLEPRSRALKNLANRCAVVEIENLVISLSQAEKYGGSIAQTLRLIATDSRQKQYLSLEEK 249

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
              + AK +  ++  +   +  +V   +P ++++L
Sbjct: 250 VGKIPAKMALPLVLLV--MLPVVVLIVAPTFISLL 282


>gi|116689547|ref|YP_835170.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
 gi|116647636|gb|ABK08277.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
          Length = 332

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 57/158 (36%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           ++     R      + P  +D++      GL +  ++ V+          +  E      
Sbjct: 169 VRRRATARRQSLAAELPLLVDMLRLLQGVGLSLDQSIQVVTHDFQTMLPVLSWELGVAQR 228

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+ R+      +++     ++    + GG + E L      LR+ +    
Sbjct: 229 QFAAGRTREQSLQRLTNSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREGRRATL 288

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + Q   +  K +  +I +L   +  L+    PG M VL
Sbjct: 289 REQIGRLTVKMTGVMIVTLLPAL--LIVTAGPGIMTVL 324


>gi|153002446|ref|YP_001368127.1| type II secretion system protein [Shewanella baltica OS185]
 gi|151367064|gb|ABS10064.1| type II secretion system protein [Shewanella baltica OS185]
          Length = 423

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/172 (9%), Positives = 50/172 (29%), Gaps = 8/172 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73
           D       I   + AG+P+   + ++          E    ++     G+ LS++     
Sbjct: 83  DIAMMTRQIATMLAAGVPLVTTIELLGRGHEKAKMRELLANILSEIQSGIPLSDA----- 137

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +        +    +  G+L      ++      + +K+K++       A   + 
Sbjct: 138 MRPHRRYFDELYVDLVAAGEHSGSLDLVFDRVATYREKTEALKSKIKKAMFYPAAVVIVA 197

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183
             +   +   V             +      ++L ++        + +  ++
Sbjct: 198 ILVTTLLLLFVVPQFEDIFKGFGAELPAFTQLVLHISRGLQSSWYIFLAAIV 249


>gi|54297435|ref|YP_123804.1| pilus assembly protein PilC [Legionella pneumophila str. Paris]
 gi|53751220|emb|CAH12631.1| pilus assembly protein PilC [Legionella pneumophila str. Paris]
          Length = 406

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/187 (12%), Positives = 57/187 (30%), Gaps = 14/187 (7%)

Query: 2   KHLIKKRTAKFLD--------DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEF 52
             ++KKR   F          D       +   + +G+P+  A  ++   QS+  ++   
Sbjct: 47  NKVVKKRKPLFDRKNKKITQADITVFSRQLATMIESGIPLVQAFDIVAKGQSNKRLKDLI 106

Query: 53  RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112
             +      GL+L+ES+ +          +     +    +  G+L   L  ++      
Sbjct: 107 ETIKHDIETGLTLAESLIKHPL-----YFNELFCNLVDAGEKSGSLDIMLDKVATYKEKI 161

Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
           + +K K++       A   +   +   +   V             D        +  +  
Sbjct: 162 EIIKKKIKKALTYPIAVMVVALLVTAGLLIYVVPQFESLFKGFGADLPAMTRAVITMSEF 221

Query: 173 LIGIMVM 179
           +     +
Sbjct: 222 MQAYWYI 228



 Score = 40.1 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/136 (10%), Positives = 41/136 (30%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRM 72
                    +  +  AGLP+ +A+  + G + + +      ++ E    G  +  ++   
Sbjct: 271 AAIARFARTLSITFAAGLPLVEALKSVAGATGNIIYAKATDKIREEVATGQQMFIAMEN- 329

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L + L+ ++    +  N      +  +E    + +
Sbjct: 330 -----THLFPNMVIQMVAIGEESGALEKMLSKVADFYEEEVNNAVDALSSLLEPIIMSIL 384

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V  +     
Sbjct: 385 GILVGGLVVAMYLPIF 400


>gi|330909369|gb|EGH37883.1| general secretion pathway protein F [Escherichia coli AA86]
          Length = 398

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 60/198 (30%), Gaps = 29/198 (14%)

Query: 5   IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62
           +K R  +    +       +     A LP+ +++AVI  QSS+  +     +V      G
Sbjct: 49  VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLADVLNQVRSAILEG 108

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             LS+++                  +    +  G L+  L  L+    +R+ +++K+   
Sbjct: 109 HPLSDALQHFPTL-----FDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQS 163

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP-------------------RGHM 163
            +       +       V  L+    P      ++                      G  
Sbjct: 164 LIYP---CMLTTVAIVVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRTGPT 220

Query: 164 LLGVAAAFMLIGIMVMRL 181
           LL       +   + ++ 
Sbjct: 221 LLATVFIVAVGFWLWLKR 238


>gi|323966491|gb|EGB61924.1| general secretion pathway protein F [Escherichia coli M863]
 gi|327251743|gb|EGE63429.1| general secretion pathway protein F [Escherichia coli STEC_7v]
          Length = 407

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 50/160 (31%), Gaps = 9/160 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
                 V+ L+    P  +    +          A   M 
Sbjct: 183 TG---VVTILLTAVVPKIIEQFDHLGLALPASTRALIAMS 219


>gi|300115459|ref|YP_003762034.1| type II secretion system F domain-containing protein [Nitrosococcus
           watsonii C-113]
 gi|299541396|gb|ADJ29713.1| Type II secretion system F domain protein [Nitrosococcus watsonii
           C-113]
          Length = 410

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 61/178 (34%), Gaps = 6/178 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60
           K L  ++ A   ++       +   +RAGLP+  A ++++      PVR    ++ E   
Sbjct: 59  KRLFGRKKAVRQNEVAVLTGELATLLRAGLPLDRAFSILMEIAEEGPVRQLLSQLQEQVR 118

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+E++         +  S     +    + GG L   L  L+  +   K ++  V 
Sbjct: 119 GGSSLAEAME-----TQTETFSPLYISMIRAGEAGGALDVILGRLADFMERSKALRNAVT 173

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +  +       + G     + T V                    + +AA  +L     
Sbjct: 174 SALIYPAILVGVAGLSVIILLTFVVPQFQQLFEDAGKALPVATQIVIAAGNLLQNYWW 231


>gi|148269965|ref|YP_001244425.1| type II secretion system protein [Thermotoga petrophila RKU-1]
 gi|170288650|ref|YP_001738888.1| type II secretion system protein [Thermotoga sp. RQ2]
 gi|147735509|gb|ABQ46849.1| type II secretion system protein [Thermotoga petrophila RKU-1]
 gi|170176153|gb|ACB09205.1| type II secretion system protein [Thermotoga sp. RQ2]
          Length = 399

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 57/183 (31%), Gaps = 22/183 (12%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRSEFRRVIETQHLGLSLSESISRM 72
           +       +   + AG+ + +A+ ++  Q+  S   R     +  +   G SL+E+  + 
Sbjct: 61  EIATFCRQLSIMISAGIRIKEALNILARQTVFSKRFRKVILEIALSVETGDSLAEAFRKT 120

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    + GG L   L   +      K ++ +V++         + 
Sbjct: 121 G------VFDSVLISMLEAGEEGGVLDRTLKRAADFYESMKRLQDEVKSAMAYPLFVLFF 174

Query: 133 IGSLPFCVSTLV-----------YFTSPGYMNVLINDPR---GHMLLGVAAAFMLIGIMV 178
              +   +S  +              SP   ++L  +           V    ++ GI V
Sbjct: 175 AVVIVLVISFYILPNLVRAFGTSIPLSPTIQSLLKANEFLSENWPWFSVLVVGIIAGIFV 234

Query: 179 MRL 181
           +  
Sbjct: 235 LMK 237


>gi|256020058|ref|ZP_05433923.1| type IV pilin biogenesis protein [Shigella sp. D9]
 gi|332281207|ref|ZP_08393620.1| assembly protein in type IV pilin biogenesis transmembrane protein
           [Shigella sp. D9]
 gi|332103559|gb|EGJ06905.1| assembly protein in type IV pilin biogenesis transmembrane protein
           [Shigella sp. D9]
          Length = 400

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/182 (11%), Positives = 53/182 (29%), Gaps = 22/182 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  +  + +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKALRQLTDKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +     +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLM 235

Query: 180 RL 181
           R 
Sbjct: 236 RR 237


>gi|217316901|gb|ACK37860.1| PilC [Vibrio vulnificus]
          Length = 408

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/154 (10%), Positives = 45/154 (29%), Gaps = 9/154 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +  G+P+  ++ ++        ++S    V +    G  LS+++   
Sbjct: 68  KDITLLTRQLATMLTTGVPILQSLKLVADNHRKAEMKSILASVSKAVEAGTPLSKALRSA 127

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                  +       +    +  GNL +    L+      + ++AKV    +       +
Sbjct: 128 S-----PQFDGIYVDLVATGEQSGNLDQVFERLAFYREKNEQLRAKVIKALIYP---CMV 179

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
           +         ++    P +  +            
Sbjct: 180 VLVALGVSYLMLTKVIPEFRKMFTGFGAELPWFT 213



 Score = 35.5 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/136 (8%), Positives = 37/136 (27%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
                    +  S  AG+P+  ++      + +   +     V      G+ +  ++   
Sbjct: 272 AAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAAGMPMYIAMRN- 330

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          + +  +  G + + L  ++ I     +         +E     ++
Sbjct: 331 -----SLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFL 385

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V+ +     
Sbjct: 386 GVVVGGLVTAMYLPIF 401


>gi|148359056|ref|YP_001250263.1| type IV pilus assembly protein PilC [Legionella pneumophila str.
           Corby]
 gi|296107105|ref|YP_003618805.1| type IV pilus assembly protein PilC [Legionella pneumophila 2300/99
           Alcoy]
 gi|148280829|gb|ABQ54917.1| (type IV) pilus assembly protein PilC [Legionella pneumophila str.
           Corby]
 gi|295649006|gb|ADG24853.1| type IV pilus assembly protein PilC [Legionella pneumophila 2300/99
           Alcoy]
          Length = 406

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/187 (12%), Positives = 57/187 (30%), Gaps = 14/187 (7%)

Query: 2   KHLIKKRTAKFLD--------DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEF 52
             ++KKR   F          D       +   + +G+P+  A  ++   QS+  ++   
Sbjct: 47  NKVVKKRKPLFDRKNKKITQADITVFSRQLATMIESGIPLVQAFDIVAKGQSNKRLKDLI 106

Query: 53  RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112
             +      GL+L+ES+ +          +     +    +  G+L   L  ++      
Sbjct: 107 ETIKHDIETGLTLAESLIKHPL-----YFNELFCNLVDAGEKSGSLDIMLDKVATYKEKI 161

Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
           + +K K++       A   +   +   +   V             D        +  +  
Sbjct: 162 EIIKKKIKKALTYPIAVMVVALLVTAGLLIYVVPQFESLFKGFGADLPAMTRAVITMSEF 221

Query: 173 LIGIMVM 179
           +     +
Sbjct: 222 MQAYWYI 228



 Score = 40.1 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/136 (10%), Positives = 41/136 (30%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRM 72
                    +  +  AGLP+ +A+  + G + + +      ++ E    G  +  ++   
Sbjct: 271 AAIARFARTLSITFAAGLPLVEALKSVAGATGNIIYAKATDKIREEVATGQQMFIAMEN- 329

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L + L+ ++    +  N      +  +E    + +
Sbjct: 330 -----THLFPNMVIQMVAIGEESGALEKMLSKVADFYEEEVNNAVDALSSLLEPIIMSIL 384

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V  +     
Sbjct: 385 GILVGGLVVAMYLPIF 400


>gi|37680964|ref|NP_935573.1| type IV pilus (Tfp) assembly protein PilC [Vibrio vulnificus YJ016]
 gi|37199714|dbj|BAC95544.1| type IV pilus (Tfp) assembly protein PilC [Vibrio vulnificus YJ016]
          Length = 408

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/154 (10%), Positives = 45/154 (29%), Gaps = 9/154 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +  G+P+  ++ ++        ++S    V +    G  LS+++   
Sbjct: 68  KDITLLTRQLSTMLTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTPLSKALRSA 127

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                  +       +    +  GNL +    L+      + ++AKV    +       +
Sbjct: 128 S-----PQFDGIYVDLVATGEQSGNLDQVFERLAFYREKNEQLRAKVIKALIYP---CMV 179

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
           +         ++    P +  +            
Sbjct: 180 VLVALGVSYLMLTQVIPEFRKMFTGFGAELPWFT 213



 Score = 35.9 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/136 (8%), Positives = 37/136 (27%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
                    +  S  AG+P+  ++      + +   +     V      G+ +  ++   
Sbjct: 272 AAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAAGMPMYIAMRN- 330

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          + +  +  G + + L  ++ I     +         +E     ++
Sbjct: 331 -----SLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFL 385

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V+ +     
Sbjct: 386 GVVVGGLVTAMYLPIF 401


>gi|323135892|ref|ZP_08070975.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242]
 gi|322398983|gb|EFY01502.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242]
          Length = 405

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/185 (10%), Positives = 65/185 (35%), Gaps = 17/185 (9%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
               +         +A +P+  ++ ++    +S  +R   + ++     G SLS+++S+ 
Sbjct: 65  AQIASFTREFATLEQANVPLDQSLRILSAQSASPVLRDLAQDILTQIVDGASLSDAMSKR 124

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +  + +  G +  A+ +L+ +L  +  ++ ++Q+  +       +
Sbjct: 125 PDVFG-----REYINVVREGETVGKVGAAMTDLADMLERQLELRGRIQSALVYPALLITL 179

Query: 133 IGSLPFCVSTLVYFTS-----------PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
                  V   +  +            P  +  +I+       +G+    ++  + ++R 
Sbjct: 180 ALISTGVVLGTLVPSIAPIFADNGKPMPSGLQFIIDTEANAGTIGIVLGVIVATLFLLRR 239

Query: 182 MINFD 186
           M    
Sbjct: 240 MAQTR 244



 Score = 36.6 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 44/130 (33%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   ++AG+P+   +        +  + +E   VIE    G  LS S+  +    P
Sbjct: 273 FARTLGSMLKAGVPLLQGLESARAAVVNHYLNAELAGVIEAVRGGAHLSGSLGGVAFIPP 332

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +  +    +  G L + L  ++ +   +     +     +    +  I G + 
Sbjct: 333 ------VAPQMISIGEETGQLDDMLLRVATMFERQTQRSIERAMGLLTPVLTIAIAGVVG 386

Query: 138 FCVSTLVYFT 147
             + T++   
Sbjct: 387 GLIMTVMDAV 396


>gi|312961923|ref|ZP_07776420.1| general secretion pathway protein F [Pseudomonas fluorescens WH6]
 gi|311283733|gb|EFQ62317.1| general secretion pathway protein F [Pseudomonas fluorescens WH6]
          Length = 400

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 61/166 (36%), Gaps = 11/166 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
               +    +   + AG P+  ++ +++ Q      R+   R+ E    G  LS+++   
Sbjct: 62  AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGQPLSKALEEE 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    S     +    + GG L   L  LS  L   + ++ +V    +      ++
Sbjct: 122 GSQ-----FSPLYLSMVRAGEAGGALENTLRQLSDYLERSQLLRGEVINALIYPA---FL 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +  +   ++ L+ +  P ++ +  +   G  +  +    + +G  +
Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILGLGQFL 217


>gi|313773054|gb|EFS39020.1| type II secretion system F domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313831097|gb|EFS68811.1| type II secretion system F domain protein [Propionibacterium acnes
           HL007PA1]
 gi|314980646|gb|EFT24740.1| type II secretion system F domain protein [Propionibacterium acnes
           HL072PA2]
 gi|315090039|gb|EFT62015.1| type II secretion system F domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315096612|gb|EFT68588.1| type II secretion system F domain protein [Propionibacterium acnes
           HL038PA1]
 gi|327330162|gb|EGE71912.1| membrane spanning protein [Propionibacterium acnes HL096PA3]
 gi|327333258|gb|EGE74979.1| membrane spanning protein [Propionibacterium acnes HL097PA1]
 gi|327443397|gb|EGE90051.1| type II secretion system F domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327447489|gb|EGE94143.1| type II secretion system F domain protein [Propionibacterium acnes
           HL043PA2]
          Length = 288

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 61/169 (36%), Gaps = 1/169 (0%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
            ++     +  +   +  G  +  AV +   ++   +     +++      +   E+  R
Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +   E       +++ +      S  L  ++  ++ R  +  +V+A   + + S  
Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            I  +   +   +      ++  L   P G +L+ VA    +I ++ M 
Sbjct: 224 QITLVTIAMFGGLLVIGRSFLAPL-ATPPGQVLVAVAVVMYVIALVQMY 271


>gi|240136824|ref|YP_002961291.1| Type II secretion system protein [Methylobacterium extorquens AM1]
 gi|240006788|gb|ACS38014.1| Type II secretion system protein [Methylobacterium extorquens AM1]
          Length = 404

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 51/159 (32%), Gaps = 5/159 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L      V AGL V  A+ ++  Q+S  ++     ++E    G SLS +++   +  P 
Sbjct: 71  FLREFGTLVGAGLTVDRALRLVERQASAALKPVLADILERVVAGASLSRAMAAHPQAFPP 130

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    I    +  G L   L +L+  +  R  ++  + +  +       +      
Sbjct: 131 D-----MVDIVRAGEATGTLVAVLGSLTGSIERRDAVRRHLTSAMIYPALLVLMAVGTLV 185

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
            +  ++              P   + +  A    +    
Sbjct: 186 MIVVVLVPALAPLFEGSGRAPPLTIRVAAALGDWVGAFW 224


>gi|284161834|ref|YP_003400457.1| type II secretion system protein [Archaeoglobus profundus DSM 5631]
 gi|284011831|gb|ADB57784.1| type II secretion system protein [Archaeoglobus profundus DSM 5631]
          Length = 617

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 63/148 (42%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  +  +   ++L   P   + +     +G+P+  A++++    + P+R E R++     
Sbjct: 399 LHEIRVRSVGRYLRYIPIFFNRLATINESGVPIYRAISILAKTDTSPLRDEIRKIKTDID 458

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            GL LS +  R    + + +V+   T+++   +  GNL+E L   ++     + +K +  
Sbjct: 459 WGLDLSRAFVRFANRIRVFDVTRVVTMLNEAMKTTGNLTEVLVISAKEASRSELIKRERY 518

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTS 148
              M      ++   +   ++ ++    
Sbjct: 519 YSMMTYTIIIYVAFFVFIGITYIISSMF 546



 Score = 48.2 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 60/180 (33%), Gaps = 7/180 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQHL-GLS 64
           R +K      +A+  +      G  +      +         V  E  R+++     G+ 
Sbjct: 125 RKSKIDRMLHHAVAFMHALSIGGTDIYRIFKTLAEHQDVYGEVSREVSRIVKDVEYGGMD 184

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L  +++  V   P +    F   +      GG++   L        ++     K     +
Sbjct: 185 LRSALTNAVELSPSENYKEFLHGLITVIDSGGDIRSYLEERVEYFFEKARQSQKAFLELL 244

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
              A +++   +   +  ++       + +L+ +   ++L  V   F+ IG  +   ++ 
Sbjct: 245 GMMAESYVTALVAAPLFLMII----EIVMLLMGEGNEYVLYAVIYLFIPIGSALFAGIVK 300


>gi|311105840|ref|YP_003978693.1| general secretion pathway protein F [Achromobacter xylosoxidans A8]
 gi|310760529|gb|ADP15978.1| general secretion pathway protein F [Achromobacter xylosoxidans A8]
          Length = 401

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 58/167 (34%), Gaps = 6/167 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66
           RT     D       +   + A LP+  A++  + Q+    + +    V +    G  LS
Sbjct: 56  RTRLSDADLAWLTRQLASLLAASLPLDAALSATLEQAEKKHIAAVLGGVRDDVRAGHKLS 115

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +++   R     +       +    +  G+L++ +  L+  + +R  +++KV    +  
Sbjct: 116 TALAARPR-----DFPEIYRALIGAGEESGDLAQVMEKLADYIEERNALRSKVLTAFIYP 170

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
              A +   +   +   V        +    +      + +A +  +
Sbjct: 171 AVVACVSVIIVIFLLGYVVPQVVSAFSQAKQELPLLTRIMLALSDYV 217



 Score = 35.5 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 34/130 (26%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +     +G+ +  A+        +D +R            G  LS           
Sbjct: 270 FASTLAILSGSGVALLTALEAARRTLGNDVLRQAVDEASARVREGAPLS------ASLGA 323

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +        +    +  G L E L   ++ L      +A      +E      + G + 
Sbjct: 324 QKVFPSLLVHLIASGEKTGRLPELLDRGAQNLSRDLERRAMAMTALLEPALILLMGGFVL 383

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 384 LIVLAVMSPI 393


>gi|28899299|ref|NP_798904.1| type IV pilin biogenesis protein PilC [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260363755|ref|ZP_05776530.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus K5030]
 gi|260879009|ref|ZP_05891364.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus
           AN-5034]
 gi|260896384|ref|ZP_05904880.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus
           Peru-466]
 gi|260900209|ref|ZP_05908604.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus
           AQ4037]
 gi|28807523|dbj|BAC60788.1| type IV pilin biogenesis protein PilC [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308089112|gb|EFO38807.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus
           Peru-466]
 gi|308089566|gb|EFO39261.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus
           AN-5034]
 gi|308110214|gb|EFO47754.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus
           AQ4037]
 gi|308111151|gb|EFO48691.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus K5030]
          Length = 407

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 46/154 (29%), Gaps = 9/154 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       I   +  G+P+  A+ ++        ++S    V      G  +S+++   
Sbjct: 67  KDITVFTRQISTMLVTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAMRTA 126

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +            +    +  GNL+E    L+      + ++AKV    +       +
Sbjct: 127 SNHFDPLYTD-----LIATGEQSGNLAEVFERLATYREKNEQLRAKVIKALIYPA---MV 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
           I         ++    P +  + +          
Sbjct: 179 ILVALGVSFIMLTKVIPEFEKMFVGFGAELPWFT 212



 Score = 35.5 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/136 (9%), Positives = 37/136 (27%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72
                    +  S  AG+P+  ++      S +         V      G+ +  ++   
Sbjct: 271 AAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNMHYQLAIEEVYRDTAAGMPMYVAMRN- 329

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          + +  +  G L + L  ++ I     +      +  +E     ++
Sbjct: 330 -----CNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFL 384

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V+ +     
Sbjct: 385 GIVVGGLVTAMYLPIF 400


>gi|194365986|ref|YP_002028596.1| general secretion pathway protein F [Stenotrophomonas maltophilia
           R551-3]
 gi|194348790|gb|ACF51913.1| general secretion pathway protein F [Stenotrophomonas maltophilia
           R551-3]
          Length = 399

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 59/176 (33%), Gaps = 8/176 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           +   A   +   + A LP+  A+  ++ Q+    V      V      G  L+ +++   
Sbjct: 61  ELAWATRQLASLLAASLPLEAALTAVIEQAERPHVAQALTAVRADVRAGQRLTVALAARP 120

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R  P          +    +  G+L+  +  L+  + +R  ++AKV    +   A + + 
Sbjct: 121 RDFPP-----IYRALVGAGEDSGDLARVMERLADYIEERNALQAKVLTAFIYPAAISLVS 175

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMINFDV 187
            ++   + + V                    ++L  +A     G+     +    V
Sbjct: 176 VAIVIFLLSYVVPQVVTAFVQARQTLPMLTQVMLAASAFVRSWGVWAGLGIAALVV 231



 Score = 37.4 bits (85), Expect = 0.83,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 38/130 (29%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+P+  A+        +  +      V      G +L  ++        
Sbjct: 268 FASTLAILLDAGVPLLRALEAARQTLGNALLARCADDVSARVREGAALGAALKV------ 321

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +        +    +  G+L+  L   ++ +      +A      +E      + G + 
Sbjct: 322 QKVYPPILVHLVASGEKTGSLAPLLDRAAQTISREIERRAMALTALLEPTMILVMGGVVL 381

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 382 TIVLAVLMPI 391


>gi|169334873|ref|ZP_02862066.1| hypothetical protein ANASTE_01279 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257611|gb|EDS71577.1| hypothetical protein ANASTE_01279 [Anaerofustis stercorihominis DSM
           17244]
          Length = 345

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 53/166 (31%), Gaps = 10/166 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                + L+ +   V+AG+P+ +++ ++    S+    E    +    L           
Sbjct: 10  DRYISSFLEQLYLLVKAGVPLDESIGMLSKGESNKESKELLNSLLKDLLEG-----KDLH 64

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 +    + T +    +  G+L + L +L         +   ++         A +
Sbjct: 65  TAIDNSKVFPHYMTKMIKAGETTGHLEDTLKSLYEYYDRMDRLNNSIKNAVFYPSILAVM 124

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           + ++   + T V          + +   G      + A + IG  +
Sbjct: 125 MLAVILVLITKVMPIFSEVYEQMGSTLTG-----FSLAMLNIGKFL 165


>gi|26249922|ref|NP_755962.1| putative general secretion pathway protein F [Escherichia coli
           CFT073]
 gi|91212764|ref|YP_542750.1| putative general secretion pathway protein F [Escherichia coli
           UTI89]
 gi|110643566|ref|YP_671296.1| putative general secretion pathway protein F [Escherichia coli 536]
 gi|117625605|ref|YP_858928.1| putative general secretion pathway protein F [Escherichia coli APEC
           O1]
 gi|191171599|ref|ZP_03033147.1| general secretion pathway protein F [Escherichia coli F11]
 gi|218560388|ref|YP_002393301.1| general secretory pathway component, cryptic [Escherichia coli S88]
 gi|218691612|ref|YP_002399824.1| general secretory pathway component, cryptic [Escherichia coli
           ED1a]
 gi|227883458|ref|ZP_04001263.1| general secretion pathway protein F [Escherichia coli 83972]
 gi|237703057|ref|ZP_04533538.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|300974006|ref|ZP_07172413.1| general secretion pathway protein F [Escherichia coli MS 200-1]
 gi|300979898|ref|ZP_07174774.1| general secretion pathway protein F [Escherichia coli MS 45-1]
 gi|301046098|ref|ZP_07193276.1| general secretion pathway protein F [Escherichia coli MS 185-1]
 gi|306816330|ref|ZP_07450468.1| general secretory pathway component, cryptic [Escherichia coli
           NC101]
 gi|331659617|ref|ZP_08360555.1| general secretion pathway protein F [Escherichia coli TA206]
 gi|26110350|gb|AAN82536.1|AE016767_296 Putative general secretion pathway protein F [Escherichia coli
           CFT073]
 gi|91074338|gb|ABE09219.1| putative general secretion pathway protein F [Escherichia coli
           UTI89]
 gi|110345158|gb|ABG71395.1| putative general secretion pathway protein F [Escherichia coli 536]
 gi|115514729|gb|ABJ02804.1| putative general secretion pathway protein F [Escherichia coli APEC
           O1]
 gi|190908226|gb|EDV67817.1| general secretion pathway protein F [Escherichia coli F11]
 gi|218367157|emb|CAR04931.1| general secretory pathway component, cryptic [Escherichia coli S88]
 gi|218429176|emb|CAR10131.2| general secretory pathway component, cryptic [Escherichia coli
           ED1a]
 gi|226902321|gb|EEH88580.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|227839602|gb|EEJ50068.1| general secretion pathway protein F [Escherichia coli 83972]
 gi|294490049|gb|ADE88805.1| general secretion pathway protein F [Escherichia coli IHE3034]
 gi|300301924|gb|EFJ58309.1| general secretion pathway protein F [Escherichia coli MS 185-1]
 gi|300309016|gb|EFJ63536.1| general secretion pathway protein F [Escherichia coli MS 200-1]
 gi|300409409|gb|EFJ92947.1| general secretion pathway protein F [Escherichia coli MS 45-1]
 gi|305850726|gb|EFM51183.1| general secretory pathway component, cryptic [Escherichia coli
           NC101]
 gi|307555414|gb|ADN48189.1| general secretory pathway component [Escherichia coli ABU 83972]
 gi|307628362|gb|ADN72666.1| general secretory pathway component, cryptic [Escherichia coli
           UM146]
 gi|315284598|gb|EFU44043.1| general secretion pathway protein F [Escherichia coli MS 110-3]
 gi|315292356|gb|EFU51708.1| general secretion pathway protein F [Escherichia coli MS 153-1]
 gi|315298625|gb|EFU57880.1| general secretion pathway protein F [Escherichia coli MS 16-3]
 gi|323950241|gb|EGB46123.1| general secretion pathway protein F [Escherichia coli H252]
 gi|323954550|gb|EGB50333.1| general secretion pathway protein F [Escherichia coli H263]
 gi|324014943|gb|EGB84162.1| general secretion pathway protein F [Escherichia coli MS 60-1]
 gi|331052832|gb|EGI24865.1| general secretion pathway protein F [Escherichia coli TA206]
          Length = 398

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 60/198 (30%), Gaps = 29/198 (14%)

Query: 5   IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLG 62
           +K R  +    +       +     A LP+ +++AVI  Q S++ +     +V      G
Sbjct: 49  VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNNRLADVLNQVRSAILEG 108

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             LS+++                  +    +  G L+  L  L+    +R+ +++K+   
Sbjct: 109 HPLSDALQHFPTL-----FDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQS 163

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP-------------------RGHM 163
            +       +       V  L+    P      ++                      G  
Sbjct: 164 LIYP---CMLTTVAIVVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRTGPT 220

Query: 164 LLGVAAAFMLIGIMVMRL 181
           LL       +   + ++ 
Sbjct: 221 LLATVFIVAVGFWLWLKR 238


>gi|332098955|gb|EGJ03906.1| bacterial type II secretion system protein F domain protein
           [Shigella boydii 3594-74]
          Length = 400

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 55/182 (30%), Gaps = 22/182 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++ GQ          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAGQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +     +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLM 235

Query: 180 RL 181
           R 
Sbjct: 236 RR 237


>gi|82542710|ref|YP_406657.1| type IV pilin biogenesis protein [Shigella boydii Sb227]
 gi|81244121|gb|ABB64829.1| HofC [Shigella boydii Sb227]
          Length = 400

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 55/182 (30%), Gaps = 22/182 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++ GQ          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAGQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEA 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +     +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLM 235

Query: 180 RL 181
           R 
Sbjct: 236 RR 237


>gi|217316896|gb|ACK37856.1| PilC [Vibrio vulnificus]
          Length = 408

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/154 (10%), Positives = 45/154 (29%), Gaps = 9/154 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +  G+P+  ++ ++        ++S    V +    G  LS+++   
Sbjct: 68  KDITLLTRQLATMLTTGVPILQSLKLVADNHRKAEMKSILASVSKAVEAGTPLSKALRSA 127

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                  +       +    +  GNL +    L+      + ++AKV    +       +
Sbjct: 128 S-----PQFDGIYVDLVATGEQSGNLDQVFERLAFYREKNEQLRAKVIKALIYP---CMV 179

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
           +         ++    P +  +            
Sbjct: 180 VLVALGVSYLMLTKVIPEFRKMFTGFGAELPWFT 213



 Score = 35.9 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/136 (8%), Positives = 37/136 (27%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
                    +  S  AG+P+  ++      + +   +     V      G+ +  ++   
Sbjct: 272 AAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAAGMPMYIAMRN- 330

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          + +  +  G + + L  ++ I     +         +E     ++
Sbjct: 331 -----SLAFPELVLQMVMIGEESGQIDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFL 385

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V+ +     
Sbjct: 386 GVVVGGLVAAMYLPIF 401


>gi|153838722|ref|ZP_01991389.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus
           AQ3810]
 gi|149747882|gb|EDM58760.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus
           AQ3810]
          Length = 407

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 46/154 (29%), Gaps = 9/154 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       I   +  G+P+  A+ ++        ++S    V      G  +S+++   
Sbjct: 67  KDITVFTRQISTMLVTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAMRTA 126

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +            +    +  GNL+E    L+      + ++AKV    +       +
Sbjct: 127 SNHFDPLYTD-----LIATGEQSGNLAEVFERLATYREKNEQLRAKVIKALIYPA---MV 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
           I         ++    P +  + +          
Sbjct: 179 ILVALGVSFIMLTKVIPEFEKMFVGFGAELPWFT 212



 Score = 35.5 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/136 (9%), Positives = 37/136 (27%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72
                    +  S  AG+P+  ++      S +         V      G+ +  ++   
Sbjct: 271 AAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNMHYQLAIEEVYRDTAAGMPMYVAMRN- 329

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          + +  +  G L + L  ++ I     +      +  +E     ++
Sbjct: 330 -----CNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFL 384

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V+ +     
Sbjct: 385 GIVVGGLVTAMYLPIF 400


>gi|196047886|ref|ZP_03115064.1| conserved membrane protein, putative [Bacillus cereus 03BB108]
 gi|196021142|gb|EDX59871.1| conserved membrane protein, putative [Bacillus cereus 03BB108]
          Length = 327

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 80/187 (42%), Gaps = 1/187 (0%)

Query: 1   MKHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           + H+ +K+      D     +  +  S++    V D+V  +       ++ E  +     
Sbjct: 138 LLHMHRKKYKFVEIDRISIYMKTLSNSLQILGNVVDSVEEVKPLVHSSIKEELNKATIKL 197

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G S++ES   + +  P QE+ FF  ++ V  + GG   EAL +++    +RK  + ++
Sbjct: 198 QQGKSVNESFMSLDKKYPYQELKFFHEMLDVADKNGGRNIEALESIAVDFEERKVKQMRL 257

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            A +++   +          +  +  F  P    +L++ P G ++    A  +L   + +
Sbjct: 258 YAETIQGTKAFRNSALTVLAIPFIFKFFVPDAYGMLMSTPLGSIVFVSIACVVLYCYIRI 317

Query: 180 RLMINFD 186
           + + ++D
Sbjct: 318 QKLADWD 324


>gi|293412746|ref|ZP_06655414.1| general secretion pathway protein F [Escherichia coli B354]
 gi|291468393|gb|EFF10886.1| general secretion pathway protein F [Escherichia coli B354]
          Length = 398

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 60/198 (30%), Gaps = 29/198 (14%)

Query: 5   IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62
           +K R  +    +       +     A LP+ +++AVI  QSS+  +     +V      G
Sbjct: 49  VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLADVLNQVRSAILEG 108

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             LS+++                  +    +  G L+  L  L+    +R+ +++K+   
Sbjct: 109 HPLSDALQHFPTL-----FDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQS 163

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND-------------------PRGHM 163
            +       +       V  L+    P      ++                      G  
Sbjct: 164 LIYP---CMLTAVAIVVVIILLTAVVPKITKQFVHMKQQLPLSTRILLGLSDTLQHTGPT 220

Query: 164 LLGVAAAFMLIGIMVMRL 181
           LL       +   + ++ 
Sbjct: 221 LLATVFIVAVGFWLWLKR 238


>gi|288574999|ref|ZP_06393356.1| type II secretion system protein [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288570740|gb|EFC92297.1| type II secretion system protein [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 418

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 60/162 (37%), Gaps = 7/162 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   V+AG+ +  ++ ++  Q+ +  + +   RV +    G SLS+S+ R   + P
Sbjct: 85  FFRQLATMVKAGVSLGASLDILSEQTKNKILGNGIVRVKKMVDGGNSLSQSMGRQSVFPP 144

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         I    + GG+L  +L  ++  +  +  +K K+ +              + 
Sbjct: 145 MS------ISIIQAGEEGGSLDVSLERVADFMERQDALKKKIVSAVTYPAVVMAFSLFVL 198

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           + + T+V        + L  +         +    +    V+
Sbjct: 199 YLLITVVMPKFATVFSNLNIELPWATRTMFSFGLWMASNWVI 240



 Score = 38.6 bits (88), Expect = 0.36,   Method: Composition-based stats.
 Identities = 18/145 (12%), Positives = 45/145 (31%), Gaps = 7/145 (4%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET-QHLGLSLSESIS 70
           F      +   +     +G+P+  A+ +    + + V     + +E     G  L +S  
Sbjct: 280 FRAGMARSTRTLASLTHSGIPILQALDMTSRIAGNVVFERAFKYLEQAARKGAGLGDSAR 339

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            +  + P+         +    +  G + E L  ++       + K K     +E     
Sbjct: 340 NVKLFPPM------VAHMLRVGEETGQVDEMLNKVADWFELELDEKIKRLTSILEPLLIV 393

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155
           ++ G +      +          +L
Sbjct: 394 FVGGIVALVALAIFSPIVTAIQEML 418


>gi|307325197|ref|ZP_07604400.1| Type II secretion system F domain protein [Streptomyces
           violaceusniger Tu 4113]
 gi|306889001|gb|EFN19984.1| Type II secretion system F domain protein [Streptomyces
           violaceusniger Tu 4113]
          Length = 303

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/184 (11%), Positives = 62/184 (33%), Gaps = 3/184 (1%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
                RT +         +++  ++ A   +  AV      +   +R E   ++ +   G
Sbjct: 100 RAAVARTERLE-ALALWTEMLRDTLSAAAGLEQAVLATADIAPTALRRELSALVVSVRSG 158

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQA 121
             L  ++                  + + ++   + L+  L  L+  +R++  M+ ++ A
Sbjct: 159 QPLPAALRTFADDADDPLADVVVAALVMAAERQASQLAALLGELADSVREQVAMRQRIDA 218

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
                +    +  ++   ++  +   +  Y++   N   G ++L V  A        +  
Sbjct: 219 GRASIRTGVRVTVTVTLGMAVGLTVFNRPYLDP-FNTLTGQLVLAVVGALFAASFTWLSA 277

Query: 182 MINF 185
           +   
Sbjct: 278 IGRV 281


>gi|116071988|ref|ZP_01469256.1| fimbrial assembly protein PilC-like [Synechococcus sp. BL107]
 gi|116065611|gb|EAU71369.1| fimbrial assembly protein PilC-like [Synechococcus sp. BL107]
          Length = 357

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/157 (10%), Positives = 54/157 (34%), Gaps = 6/157 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLS 66
           R      D       +   +++G+P++  + +I     ++ +    +R+      G  LS
Sbjct: 9   RLKVPQKDLLVFFRQLAVILQSGVPLAQGLILIAENMTNENLSQCVQRISSRLSAGEELS 68

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            S+ +  +          +  +    + GG L + L  ++ +L +R  ++ ++    +  
Sbjct: 69  LSLRQYPK-----VFEPLTIGLIEAGEAGGILEDVLDRIALLLEERAKIRGQIIGALVYP 123

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
                +  S+   +   +        + +  +     
Sbjct: 124 VIVMVLAVSVSLALLIFIVPRFKAMFDGMGAELPALT 160



 Score = 36.3 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 38/134 (28%), Gaps = 5/134 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           +  +  D +   V +G+P+ D +   +  SS+ +     R        L + +       
Sbjct: 221 EMASMCDTLATLVNSGIPIVDGIERCISASSNELVRRTLR-----ESILLIRQGQELNYS 275

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                        +    +  G LS  L  L+   +            +ME      + G
Sbjct: 276 MGRSGVFPKLVISMIKIGEETGQLSFMLEKLAIFYKREVESAVSSLTKAMEPAVVFVVAG 335

Query: 135 SLPFCVSTLVYFTS 148
            +   V  L     
Sbjct: 336 IVGTIVIALYLPMF 349


>gi|119897093|ref|YP_932306.1| general secretion pathway protein F [Azoarcus sp. BH72]
 gi|119669506|emb|CAL93419.1| general secretion pathway protein F [Azoarcus sp. BH72]
          Length = 401

 Score = 57.4 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/161 (10%), Positives = 50/161 (31%), Gaps = 5/161 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            +       +   + AG+P+ +A+  +   ++ P    +  +      G +LS++ +   
Sbjct: 61  RELGAFCAQLAHLLEAGIPLVEALRDLGEGNATPAARPWDDIATALEGGDTLSDACAARA 120

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G L   L +L+  L     + A ++ +S+       ++
Sbjct: 121 DL-----FDEVFVSLLRAGEQAGRLPAVLHHLAATLERSAQVAAHLRRMSIYPAFVLAVL 175

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
                     V          L           ++ + +++
Sbjct: 176 AVAAGTALVFVVPQLSSLFRSLGETLPWQTRALLSLSDLVL 216


>gi|307719946|ref|YP_003891086.1| Type II secretion system F domain-containing protein [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978039|gb|ADN08074.1| Type II secretion system F domain protein [Sulfurimonas
           autotrophica DSM 16294]
          Length = 402

 Score = 57.4 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/177 (10%), Positives = 60/177 (33%), Gaps = 11/177 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
           D+    ++ +   +++GLP+ + +  +  +S +   R     +    + G SLS +    
Sbjct: 62  DEVVELMESLHLVIKSGLPLYEGLQELAKESDNKRFRDMMLYIANAINNGQSLSTAFEAY 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +           +    +  G L   L   +  L+    +K K +   +    +   
Sbjct: 122 KNVIG-----TIILNLIKIGEETGQLEVTLKRAAEFLKRTITLKKKAKGALIYPTFA--- 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM--LIGIMVMRLMINFDV 187
             ++   +   + +  P  +++  +       L +    +   +    M ++ +  +
Sbjct: 174 FVAVLGAMLVWMIYVLPQMLDLFKSMDIKLPALTLGIIAVSNFLSAYWMYMIASIVI 230



 Score = 34.3 bits (77), Expect = 7.5,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 47/127 (37%), Gaps = 5/127 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
           + +  ++ +G+P+ +A+  +     + V  +   V         +S+       +     
Sbjct: 273 EYLRLALVSGVPIFNALQSLTDNLKNEVFKQALSV-----STGEVSKGSQISSAFSKTGI 327

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
            + F+  +    +  G+L   L  ++    +R N  A+     +E     ++ G +   +
Sbjct: 328 FTPFTVRMIGVGESSGSLDSQLDLIAEHYYERVNYYAENIGKVIEPIVLIFVGGFMALVI 387

Query: 141 STLVYFT 147
           + L+   
Sbjct: 388 AGLLGPM 394


>gi|315081086|gb|EFT53062.1| type II secretion system F domain protein [Propionibacterium acnes
           HL078PA1]
          Length = 288

 Score = 57.4 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 61/169 (36%), Gaps = 1/169 (0%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
            ++     +  +   +  G  +  AV +   ++   +     +++      +   E+  R
Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +   E       +++ +      S  L  ++  ++ R  +  +V+A   + + S  
Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            I  +   +   +      ++  L   P G +L+ VA    +I ++ M 
Sbjct: 224 QITLVTIAMFGGLLVIGRSFLAPL-ATPPGQVLVTVAVVMYVIALVQMY 271


>gi|281180362|dbj|BAI56692.1| general secretion pathway protein F [Escherichia coli SE15]
          Length = 398

 Score = 57.4 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 60/198 (30%), Gaps = 29/198 (14%)

Query: 5   IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62
           +K R  +    +       +     A LP+ +++AVI  QSS+  +     +V      G
Sbjct: 49  VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLADVLNQVRSAILEG 108

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             LS+++                  +    +  G L+  L  L+    +R+ +++K+   
Sbjct: 109 HPLSDALQHFPTL-----FDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQS 163

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP-------------------RGHM 163
            +       +       V  L+    P      ++                      G  
Sbjct: 164 LIYP---CMLTTVAIVVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRTGPT 220

Query: 164 LLGVAAAFMLIGIMVMRL 181
           LL       +   + ++ 
Sbjct: 221 LLATVFIVAVGFWLWLKR 238


>gi|111220778|ref|YP_711572.1| hypothetical protein FRAAL1321 [Frankia alni ACN14a]
 gi|111148310|emb|CAJ59982.1| putative membrane protein [Frankia alni ACN14a]
          Length = 316

 Score = 57.4 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 60/157 (38%), Gaps = 6/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I +R  + L +FP   +++  +V AG     A+  +   +   +  E R  +    
Sbjct: 160 LTRAIGEREDRMLLEFPTVAELLALAVTAGESAIGALERVSRLTHGELGRELRLALADAR 219

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +L +++  +     L  ++ F   ++V  + G  L++ L   +  +R+        +
Sbjct: 220 AGATLVQALEGIAARTALAPLTRFVDGMAVAIERGTPLADILRAQAMDVREAG------K 273

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
              +EA     I   +P     L       +   L++
Sbjct: 274 RQLLEAGGRKEIAMMIPVVFLVLPTTVIFAFYPALVS 310


>gi|320155371|ref|YP_004187750.1| type IV fimbrial assembly protein PilC [Vibrio vulnificus MO6-24/O]
 gi|319930683|gb|ADV85547.1| type IV fimbrial assembly protein PilC [Vibrio vulnificus MO6-24/O]
          Length = 408

 Score = 57.4 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/154 (10%), Positives = 45/154 (29%), Gaps = 9/154 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +  G+P+  ++ ++        ++S    V +    G  LS+++   
Sbjct: 68  KDITLLTRQLSTMLTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTPLSKALRSA 127

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                  +       +    +  GNL +    L+      + ++AKV    +       +
Sbjct: 128 S-----PQFDGIYVDLVATGEQSGNLDQVFERLAFYREKNEQLRAKVIKALIYP---CMV 179

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
           +         ++    P +  +            
Sbjct: 180 VLVALGVSYLMLTQVIPEFRKMFTGFGAELPWFT 213



 Score = 36.3 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/136 (8%), Positives = 37/136 (27%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
                    +  S  AG+P+  ++      + +   +     V      G+ +  ++   
Sbjct: 272 AAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAAGMPMYIAMRN- 330

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          + +  +  G + + L  ++ I     +         +E     ++
Sbjct: 331 -----SLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFL 385

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V+ +     
Sbjct: 386 GVVVGGLVAAMYLPIF 401


>gi|192360701|ref|YP_001982854.1| MSHA biogenesis protein MshG [Cellvibrio japonicus Ueda107]
 gi|190686866|gb|ACE84544.1| MSHA biogenesis protein MshG [Cellvibrio japonicus Ueda107]
          Length = 406

 Score = 57.4 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/170 (9%), Positives = 46/170 (27%), Gaps = 6/170 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
           +       +    RAG+P+   +  +     +   +     ++E    G+ LS ++    
Sbjct: 68  ELIMFCRQMHTISRAGIPLVKGLRGLSASIRNYAFQQALNDIVERLEAGVELSSAMRAHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           +       +     +    +  G L      LS  L    +    ++            +
Sbjct: 128 KI-----FNNMIVSMVSVGENAGRLDVVFKQLSEYLERDHSTLKSIKTALRYPSFVLIAM 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
                 ++  V     G              + +  +   +   +  L++
Sbjct: 183 TVAIAVINIYVIPAFAGLFEKFGAQLPLPTRILITVSDFFVNYWMYILLV 232



 Score = 35.5 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/139 (11%), Positives = 37/139 (26%), Gaps = 5/139 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         + AGLP+S+A+ +      +P   +  R I        +       
Sbjct: 269 RASLARYARSFGLMLNAGLPLSNALELSARAIDNPYLGDKIRAIR-----AGVERGEGLY 323

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             ++     +     +    +  G +   LA ++           K  +  +E      +
Sbjct: 324 QTHLVSGMFTPLVLQMIAVGEESGQVDALLAEVASFYESEVEYDVKQLSDRIEPIMIVML 383

Query: 133 IGSLPFCVSTLVYFTSPGY 151
            G +      +       Y
Sbjct: 384 AGFVTIIALGIFLPMWDMY 402


>gi|313765311|gb|EFS36675.1| type II secretion system F domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313772774|gb|EFS38740.1| type II secretion system F domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313806749|gb|EFS45254.1| type II secretion system F domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313810914|gb|EFS48628.1| type II secretion system F domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313815410|gb|EFS53124.1| type II secretion system F domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313817518|gb|EFS55232.1| type II secretion system F domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313826451|gb|EFS64165.1| type II secretion system F domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313828808|gb|EFS66522.1| type II secretion system F domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313831679|gb|EFS69393.1| type II secretion system F domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313840370|gb|EFS78084.1| type II secretion system F domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314916037|gb|EFS79868.1| type II secretion system F domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314917189|gb|EFS81020.1| type II secretion system F domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314921688|gb|EFS85519.1| type II secretion system F domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314930989|gb|EFS94820.1| type II secretion system F domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314955080|gb|EFS99486.1| type II secretion system F domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314959120|gb|EFT03222.1| type II secretion system F domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314961393|gb|EFT05494.1| type II secretion system F domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314969714|gb|EFT13812.1| type II secretion system F domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314977020|gb|EFT21115.1| type II secretion system F domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314989056|gb|EFT33147.1| type II secretion system F domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315082691|gb|EFT54667.1| type II secretion system F domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315087885|gb|EFT59861.1| type II secretion system F domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315099515|gb|EFT71491.1| type II secretion system F domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315101978|gb|EFT73954.1| type II secretion system F domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315110099|gb|EFT82075.1| type II secretion system F domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327331302|gb|EGE73041.1| putative bacterial type II secretion system protein F domain
           protein [Propionibacterium acnes HL096PA2]
 gi|327333935|gb|EGE75652.1| putative bacterial type II secretion system protein F domain
           protein [Propionibacterium acnes HL096PA3]
 gi|327450235|gb|EGE96889.1| type II secretion system F domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327454504|gb|EGF01159.1| type II secretion system F domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327456573|gb|EGF03228.1| type II secretion system F domain protein [Propionibacterium acnes
           HL083PA2]
 gi|328756268|gb|EGF69884.1| type II secretion system F domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328757049|gb|EGF70665.1| type II secretion system F domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328761171|gb|EGF74714.1| putative bacterial type II secretion system protein F domain
           protein [Propionibacterium acnes HL099PA1]
          Length = 147

 Score = 57.4 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 52/140 (37%), Gaps = 4/140 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
              P AL ++  ++ AGLP+  AV  +      P   + RR+  +   G+  S + + + 
Sbjct: 7   AQLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVPDSRAWNDLA 66

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK-ASAWI 132
               ++     +  +S     G  +SE L+  +  L+     K + +A           +
Sbjct: 67  ---SVEVWRDPAQDVSRAVDSGEGISELLSAHAAQLQVAAAEKTEKKARKAGVDAIGPLV 123

Query: 133 IGSLPFCVSTLVYFTSPGYM 152
              LP  +   V     G +
Sbjct: 124 CCHLPAFLLVGVVPIIAGMV 143


>gi|314974320|gb|EFT18416.1| type II secretion system F domain protein [Propionibacterium acnes
           HL053PA1]
          Length = 288

 Score = 57.4 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 61/169 (36%), Gaps = 1/169 (0%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
            ++     +  +   +  G  +  AV +   ++   +     +++      +   E+  R
Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +   E       +++ +      S  L  ++  ++ R  +  +V+A   + + S  
Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            I  +   +   +      ++  L   P G +L+ VA    +I ++ M 
Sbjct: 224 QITLVTIAMFGGLLVIGRSFLAPL-ATPPGQVLVAVAVVMYVIALVQMY 271


>gi|254432709|ref|ZP_05046412.1| pili biogenesis protein [Cyanobium sp. PCC 7001]
 gi|197627162|gb|EDY39721.1| pili biogenesis protein [Cyanobium sp. PCC 7001]
          Length = 418

 Score = 57.4 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 51/143 (35%), Gaps = 6/143 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   V AG+P+  ++ ++  Q      +     V    + G+S  +S+ R  +   
Sbjct: 83  FASKLAALVNAGVPIVRSIDLMASQQKMPLFKRALESVSLELNQGVSFGDSMRRWPK--- 139

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +  +    + GG L E+L  L+++L     ++ +++       A   I   + 
Sbjct: 140 --VFDRLTIAMVEAGEAGGVLDESLRRLAKLLEANAKLQNQIKGAMAYPLAVFTIAILVF 197

Query: 138 FCVSTLVYFTSPGYMNVLINDPR 160
             ++  +  T       L  +  
Sbjct: 198 LGMTIFIIPTFAKIFEDLGAELP 220



 Score = 40.9 bits (94), Expect = 0.090,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 47/159 (29%), Gaps = 19/159 (11%)

Query: 6   KKRTAKFLDDFP------------NALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEF 52
           ++R        P                      RAG+P+  A+ V+   +S+  +    
Sbjct: 262 RRRVDALALKLPLFGELIQKTATAQFSRTFSSLTRAGVPILQALDVVRDITSNSIISDAI 321

Query: 53  RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112
           +   +    G+ LS +I R         +   +  +    +  G +   L+ ++    D 
Sbjct: 322 QSSRDDLIQGIPLSIAIGR------KNVLPEMAISMLSIGEETGEMDAMLSKVADFYEDE 375

Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
                K     +E      + G +   +  +       +
Sbjct: 376 VETAVKALTSLLEPMMIVLVGGIVGAILIAMYLPMFSIF 414


>gi|281412154|ref|YP_003346233.1| Type II secretion system F domain protein [Thermotoga naphthophila
           RKU-10]
 gi|281373257|gb|ADA66819.1| Type II secretion system F domain protein [Thermotoga naphthophila
           RKU-10]
          Length = 399

 Score = 57.4 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 57/183 (31%), Gaps = 22/183 (12%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRSEFRRVIETQHLGLSLSESISRM 72
           +       +   + AG+ + +A+ ++  Q+  S   R     +  +   G SL+E+  + 
Sbjct: 61  EIATFCRQLSIMISAGIRIKEALNILARQTVFSKRFRKVILEIALSVETGDSLAEAFRKT 120

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    + GG L   L   +      K ++ +V++         + 
Sbjct: 121 G------VFDSVLISMLEAGEEGGVLDRTLKRAADFYESMKRLQDEVKSAMAYPLFVLFF 174

Query: 133 IGSLPFCVSTLV-----------YFTSPGYMNVLINDPR---GHMLLGVAAAFMLIGIMV 178
              +   +S  +              SP   ++L  +           V    ++ GI V
Sbjct: 175 AVVIVLVISFYILPNLVRAFGTSIPLSPTIRSLLKANEFLSENWPWFSVLVVGIIAGIFV 234

Query: 179 MRL 181
           +  
Sbjct: 235 LMK 237


>gi|325518827|gb|EGC98402.1| type II secretion system protein [Burkholderia sp. TJI49]
          Length = 187

 Score = 57.4 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 4/154 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESIS 70
           +DFP+ALD++   V AGL +  A+  +  +       V SE   ++     G +   ++ 
Sbjct: 33  EDFPDALDLLTVCVEAGLGLDAALMKVSDELHFRSAVVASELALLLLEMRSGFTKETALR 92

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME-AKAS 129
            +     +++V  F T++    + G +++E+L  LS +LR R+ M+A+ +A  +      
Sbjct: 93  NLALRTGVEDVESFCTMLIQADRFGTSVAESLRVLSDMLRTRRRMRAEERAAKIALKLLF 152

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
             I    P  +  L+         VL+    G +
Sbjct: 153 PLIFCVFPALMGVLLGPALIHVYRVLLPTLVGIV 186


>gi|313897907|ref|ZP_07831448.1| type II secretion system protein F domain protein [Clostridium sp.
           HGF2]
 gi|312957442|gb|EFR39069.1| type II secretion system protein F domain protein [Clostridium sp.
           HGF2]
          Length = 343

 Score = 57.4 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 57/163 (34%), Gaps = 10/163 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            ++  +    +   +  GL V + + +I   + +P   E    +  +   +    +    
Sbjct: 8   SEEMFDFCTQMSMILAGGLSVEEGLEIIGDDTDNPHMKEAAACLLEKVHVIGSFSAALEE 67

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                      ++  +    ++ G+L   +  L+       ++K  ++           +
Sbjct: 68  A-----PYFDTYAKKMVEIGEISGHLDNVMKELALYYERSSDLKQSLKEALTYPS---IL 119

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           +  +   V  +V+   P +  VL++   G  L G AA+ M  G
Sbjct: 120 LLMMWAVVGIIVWKVLPIFEKVLLH--MGAALQGTAASMMRFG 160


>gi|224370108|ref|YP_002604272.1| GspF2 [Desulfobacterium autotrophicum HRM2]
 gi|223692825|gb|ACN16108.1| GspF2 [Desulfobacterium autotrophicum HRM2]
          Length = 409

 Score = 57.4 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 6/166 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AGLPV  ++ ++V  S +P      + +++    G  LSE++ R      
Sbjct: 75  FTQDLTALLEAGLPVDRSLKILVESSENPKFKLIVKDILKLIEGGSDLSEAMGRYPE--- 131

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               S F   +    ++GG L   L  L   L   + +   +++  +       + G   
Sbjct: 132 --VFSKFYVNMVKAGEVGGILEMVLERLGIFLETSQELTDYIKSALVYPLFLLGVGGLSI 189

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             + T V          + N       + + ++          L+ 
Sbjct: 190 IVLMTFVIPKFAIMFADMGNAIPLSTKMLLVSSDYFRHYWWAMLIA 235



 Score = 36.6 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 41/129 (31%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +     +G+P+ DA+ ++    S+  +      + +    G  LS S+          
Sbjct: 280 RTLGTLSNSGVPILDALLLVRDTVSNKMIADAMNDIFDRVKEGEKLSISLGAAG------ 333

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +  +    +  G LS+ L  ++           K     ME      +   + F 
Sbjct: 334 IFPSLAIQMIKVGEETGKLSDMLLRIADNYEKVVKNLVKRVTSLMEPAMILLMGVVVGFI 393

Query: 140 VSTLVYFTS 148
           V +++    
Sbjct: 394 VVSMLMAIF 402


>gi|222834546|gb|EEE73023.1| predicted protein [Populus trichocarpa]
          Length = 183

 Score = 57.4 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/108 (13%), Positives = 36/108 (33%), Gaps = 6/108 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   ++AG+P+  ++ +I    ++         +      G S++ +  R
Sbjct: 81  EKDIAYFTRQLSTMLKAGVPLLQSIDIIARGHANPNFTQLLTVIRSDIESGSSMATAFRR 140

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             +             +    + GG L   L  LS  +     +K ++
Sbjct: 141 HPQ-----YFDTLYCNLIDAGEQGGILDALLERLSLYMEKSIALKGQI 183


>gi|297622118|ref|YP_003710255.1| putative general secretion pathway protein F [Waddlia chondrophila
           WSU 86-1044]
 gi|297377419|gb|ADI39249.1| putative general secretion pathway protein F [Waddlia chondrophila
           WSU 86-1044]
          Length = 394

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/168 (11%), Positives = 47/168 (27%), Gaps = 8/168 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRM 72
           D        + + V AG+P+ +++  +  Q   +        + E    G SLS ++   
Sbjct: 57  DQLLAFTMQLAQLVGAGVPIYESLIALEEQCRHERYHRILLSLCEQIKAGKSLSAAMEDF 116

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G+L   L  L+ +L  +  ++  +    +     A  
Sbjct: 117 PAT-----FDKLYYSMIRAGESSGSLDVVLEKLAELLAKQYKLRKDIMTAMIYPGILAGF 171

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
              L   +   V     G       +        +  +        + 
Sbjct: 172 CLVLIIILLGFVVPMIEGIFQ--GRELNAFTAFVMGLSHAFRAWWWVY 217


>gi|256832096|ref|YP_003160823.1| type II secretion system protein [Jonesia denitrificans DSM 20603]
 gi|256685627|gb|ACV08520.1| type II secretion system protein [Jonesia denitrificans DSM 20603]
          Length = 311

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 65/149 (43%), Gaps = 1/149 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + H I++R+ + + +FP   +++  +V AG P + A+  +   S+  +  E   V+    
Sbjct: 156 LTHTIRRRSERIILEFPTIAELLALAVAAGEPPATALDRVSRTSNGELSHELAIVMNEVR 215

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR-KNMKAKV 119
            G  L+++++R    + L  ++ F+  ++V  + G  L+  L   ++  RD       +V
Sbjct: 216 SGEPLTDALTRFGDRVDLPLITRFAEGVTVAIERGTPLAAVLRAQAQEARDAGHRTLMEV 275

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTS 148
                       +   LP  +   V+ + 
Sbjct: 276 GGQREILMMVPVVFIILPISIVFAVFPSF 304


>gi|88604391|ref|YP_504569.1| type II secretion system protein [Methanospirillum hungatei JF-1]
 gi|88189853|gb|ABD42850.1| type II secretion system protein [Methanospirillum hungatei JF-1]
          Length = 329

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 54/151 (35%), Gaps = 3/151 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R +      PN    +     +G+ +  A+ ++       +    R++ +      +  
Sbjct: 110 RRISSIEVALPNFFRDLAGMHESGMTLPGAIHLVSQAEYGALTPHIRQLDQRISWNFAFI 169

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++I ++ + +P+  V     +++  S  GG++ E L    +   +   MK   +      
Sbjct: 170 DAIRQLGKEIPIPLVERSVDLVARASDAGGDIVEVLRAAGKDSAEYVVMKTDRKNNM--- 226

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
                II +       +V      ++  + +
Sbjct: 227 FIYVIIILASFAVFLFVVMILVSSFLKTMAD 257


>gi|88704139|ref|ZP_01101854.1| general secretory pathway protein F [Congregibacter litoralis KT71]
 gi|88701966|gb|EAQ99070.1| general secretory pathway protein F [Congregibacter litoralis KT71]
          Length = 406

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 54/158 (34%), Gaps = 9/158 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   V++ LP++D +     Q+    +++   ++      G +L+ +++  
Sbjct: 67  ADLALLTRQLATLVQSNLPLADCLQATAEQTRRPRIKAMLLQIRSRVSEGHTLAYAMAEF 126

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    +     +    +  G L   L  L+     R++   +++   +       +
Sbjct: 127 PLA-----FNEMYRAMVTAGEHAGFLGPVLEQLADYAERRQHSGQQLRMAMIYPF---IL 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           +G     +  L+ F  P  + +     R    L VA  
Sbjct: 179 LGVAVAVIVALMVFVVPELIGIFSQSNRELPGLTVALI 216



 Score = 35.5 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 43/131 (32%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + +G+P+ +A+ +      +  +R+E   V      G SLS ++     + P
Sbjct: 275 FASTLSILMASGVPLLEALRIAGQVLVNLVLRAESEDVALRVQEGSSLSRALGEAGHFPP 334

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         +    +  G+L + L   +        M         E     ++ G + 
Sbjct: 335 M------MVHMVASGESSGSLEDMLERSANNQERELEMTLGTVMGLFEPLMVVFMGGMVL 388

Query: 138 FCVSTLVYFTS 148
             V  ++    
Sbjct: 389 LIVLAILLPIF 399


>gi|87310223|ref|ZP_01092354.1| type 4 fimbrial assembly protein pilC [Blastopirellula marina DSM
           3645]
 gi|87286972|gb|EAQ78875.1| type 4 fimbrial assembly protein pilC [Blastopirellula marina DSM
           3645]
          Length = 401

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 54/135 (40%), Gaps = 6/135 (4%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
            +   +R+G+P+  ++ V+  Q+S+  ++     ++     G SL E++ R  +      
Sbjct: 69  QLSSLIRSGVPLMRSLKVLREQASNVALQEILDDIVSRVEEGASLDEAMRRHPKA----- 123

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
            S  +T +      GG L +AL  +++   D++++K +  +          +   +   +
Sbjct: 124 FSEMATNMVRAGAEGGFLEDALDRVAKFTEDQEDLKGRTMSALAYPVFLGVVGSFVLGFL 183

Query: 141 STLVYFTSPGYMNVL 155
             +           L
Sbjct: 184 LLVFVPQFDELFGRL 198



 Score = 33.9 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 9/123 (7%), Positives = 36/123 (29%), Gaps = 5/123 (4%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
                     ++   ++ G+P+  ++  I   ++  +         ++++    S +   
Sbjct: 264 LSLAVARFCRVLGTMLKNGVPIIRSLE-ISRDAAGNLILAKAIEDASENISAGESLASPL 322

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +   ++   +L   L  ++  L  R + +  +    +E      
Sbjct: 323 SASG----YFPRNVVEMISVAEESNSLDTVLVEIADGLEKRTSRRLDLTVRLLEPMMLLV 378

Query: 132 IIG 134
           +  
Sbjct: 379 MAS 381


>gi|24371768|ref|NP_715810.1| general secretion pathway protein F [Shewanella oneidensis MR-1]
 gi|24345558|gb|AAN53255.1|AE015466_15 general secretion pathway protein F [Shewanella oneidensis MR-1]
          Length = 407

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 54/164 (32%), Gaps = 6/164 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            +       I   V AGLP+ +++  +  Q   D + S    V      G SL++S++  
Sbjct: 67  AELALITRQIATLVAAGLPIEESLKAVGQQCEKDRLASMIMAVRSRVVEGYSLADSLAEF 126

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G+L   L  L+     R+ +K+K+Q   +       +
Sbjct: 127 P-----HIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKLQQAMIYPIMLTLV 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
              +   +   V     G    +  +        +AA+  +   
Sbjct: 182 AIGVVSVLLAAVVPKVVGQFEHMGAELPATTRFLIAASDFVQNY 225


>gi|317050390|ref|YP_004111506.1| type II secretion system F domain-containing protein
           [Desulfurispirillum indicum S5]
 gi|316945474|gb|ADU64950.1| Type II secretion system F domain protein [Desulfurispirillum
           indicum S5]
          Length = 419

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 53/164 (32%), Gaps = 9/164 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
           D+       +   ++AG+P+   +  +     S  ++   R V      G+SLS S+   
Sbjct: 79  DELLMFCRQMYALIKAGVPLMRTLHGLADASHSKAMQKVLRDVAHQLESGMSLSASMQVH 138

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R  P          +    +  G L  A   ++  L   KN K +++  +        I
Sbjct: 139 SRVFPP-----IVINMVHIGENTGQLDNAFLQVAAYLEMDKNNKKRIKQATRYPT---VI 190

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
           I ++   ++ +     P +  V         L       M    
Sbjct: 191 ISAMVLAITVINIMVIPAFTQVFARMGSDLPLATRFLIGMSNAF 234



 Score = 35.9 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/133 (11%), Positives = 42/133 (31%), Gaps = 7/133 (5%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74
                  +   + AG+P   A++ +     +  +     ++ ++   G SLS S +   R
Sbjct: 284 LSRFCRTLAMMLSAGVPALQALSAVSRSVGNLYIAQSIDQMRQSIEGGESLSRSAAATKR 343

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           + P+         +    +  G+    L   +       +   K  + ++E     ++  
Sbjct: 344 FTPM------VLQMMAVGEETGSTDTMLLETAEFYDQAIDYDLKRLSDALEPILLVFMGA 397

Query: 135 SLPFCVSTLVYFT 147
            +      +    
Sbjct: 398 LVLLLALGIFMPM 410


>gi|167044732|gb|ABZ09402.1| putative bacterial type II secretion system protein F domain
           protein [uncultured marine microorganism
           HF4000_APKG7N23]
          Length = 255

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 52/141 (36%), Gaps = 1/141 (0%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K    +R  +  D +P+ L  +   +RAG+ V  A+  I  + +D +    R  +     
Sbjct: 39  KKRKLERIKELEDTWPDVLADLSEELRAGMGVESALDSIANRRNDRMGLMLRDAVSDMRD 98

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                 ++           +S   ++++V     G+++  L N+S    +   ++ +  A
Sbjct: 99  N-GFGIAMKNFAAKSESAMISRIVSILNVALASSGSIATTLENISEEFWEIYMLRKERIA 157

Query: 122 LSMEAKASAWIIGSLPFCVST 142
            +          GS+   +  
Sbjct: 158 KTQGTANFILWGGSILCPLML 178


>gi|325964626|ref|YP_004242532.1| hypothetical protein Asphe3_32910 [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470713|gb|ADX74398.1| hypothetical protein Asphe3_32910 [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 265

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 51/180 (28%), Gaps = 16/180 (8%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVI----------VGQSSDPVRSEFRRVIETQHLGLSLSES 68
            +  +   ++ G   +     I              S    +           G  +SE+
Sbjct: 76  VVQQLAALLKGGRTPARLWDEICAVYGSPVSGARTVSAGSGTVLASARAAAAAGTPVSEA 135

Query: 69  ISRM------VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + R        R    +  +  +    +    G  L++ L   +  L    +  A  Q  
Sbjct: 136 MRRALPSAFPRRDRECRIWAELAACFDIAEASGCPLADVLTRFAAQLEVEDDADAARQTA 195

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
               KA+  ++  LP     L        +++L+  P G   L       + G +    +
Sbjct: 196 LAGPKATVSLLTWLPLMGLGLGIALGVDPLSILLGTPWGLAALAAGFGLTVAGRLWSARL 255


>gi|242238116|ref|YP_002986297.1| type IV pilin biogenesis protein [Dickeya dadantii Ech703]
 gi|242130173|gb|ACS84475.1| type II secretion system protein [Dickeya dadantii Ech703]
          Length = 400

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 48/156 (30%), Gaps = 6/156 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVR 74
               L  I   ++AGLP+ DA+A+I         R     +      G + S++I     
Sbjct: 61  LAVILRQIASLLQAGLPLPDALALIGEHHEKAGWRCLLSDIRHQILQGRAFSDAIGDYPD 120

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
             P          +    +L G L E  A L+     ++ + + V               
Sbjct: 121 IFP-----AICGSLLAVGELTGKLDECCARLAVYQETQQQLASNVMKAIRYPVFVIVAGM 175

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
            +   ++ LV     G              L ++ +
Sbjct: 176 LVGLLMTALVLPEFAGLYATFNAPLPWFTRLMLSFS 211


>gi|331649125|ref|ZP_08350211.1| general secretion pathway protein F [Escherichia coli M605]
 gi|331041623|gb|EGI13767.1| general secretion pathway protein F [Escherichia coli M605]
          Length = 398

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 60/198 (30%), Gaps = 29/198 (14%)

Query: 5   IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62
           +K R  +    +       +     A LP+ +++AVI  QSS+  +     +V      G
Sbjct: 49  VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLADVLNQVRSAILEG 108

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             LS+++                  +    +  G L+  L  L+    +R+ +++K+   
Sbjct: 109 HPLSDALQHFPTL-----FDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQS 163

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP-------------------RGHM 163
            +       +       V  L+    P      ++                      G  
Sbjct: 164 LIYP---CMLTTVAIVVVIILLTAVVPKITKQFVHMKQQLPLSTRILLGLSDTLQRTGPT 220

Query: 164 LLGVAAAFMLIGIMVMRL 181
           LL       +   + ++ 
Sbjct: 221 LLATVFIVAVGFWLWLKR 238


>gi|331671621|ref|ZP_08372419.1| protein transport protein HofC [Escherichia coli TA280]
 gi|331071466|gb|EGI42823.1| protein transport protein HofC [Escherichia coli TA280]
          Length = 400

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 52/154 (33%), Gaps = 9/154 (5%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ + ++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLVLLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWPEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          I+  
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLADKVKSALRYPI---IILAM 172

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
               V  +++F  P +  +         +L    
Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPVLTQGI 206


>gi|293189314|ref|ZP_06608037.1| type II secretion system protein [Actinomyces odontolyticus F0309]
 gi|292821777|gb|EFF80713.1| type II secretion system protein [Actinomyces odontolyticus F0309]
          Length = 298

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 52/147 (35%), Gaps = 1/147 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +      R        P+  +++  +V AG  +  A+  + G +  P+ +E         
Sbjct: 143 LTMRANARQRAIDASVPDCSELLALAVAAGESIPAAIERVAGCAGGPLGAELSLTAGHIR 202

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G     +++ +V       ++  S  ++   + G  L+  L + +R  R+R       +
Sbjct: 203 NGTPSVRALADLVERTESPALTRLSRTLTTAIERGSPLASVLHDQARDQRERSLAALMEE 262

Query: 121 ALSME-AKASAWIIGSLPFCVSTLVYF 146
               E A     +   LP  V   +Y 
Sbjct: 263 GGRREIAMLLPVVFLILPVTVMFALYP 289


>gi|154507636|ref|ZP_02043278.1| hypothetical protein ACTODO_00117 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797270|gb|EDN79690.1| hypothetical protein ACTODO_00117 [Actinomyces odontolyticus ATCC
           17982]
          Length = 298

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 51/147 (34%), Gaps = 1/147 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +      R        P+  +++  +V AG  +  A+  + G +  P+  E         
Sbjct: 143 LTMRANARQRAIDASVPDCSELLALAVAAGESIPAAIERVAGCAGGPLGVELSLTAGHIR 202

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G     +++ +V       ++  S  ++   + G  L+  L + +R  R+R       +
Sbjct: 203 NGTPSVRALADLVERTESPALTRLSRTLTTAIERGSPLASVLHDQARDQRERSLAALMEE 262

Query: 121 ALSME-AKASAWIIGSLPFCVSTLVYF 146
               E A     +   LP  V   +Y 
Sbjct: 263 GGRREIAMLLPVVFLILPVTVMFALYP 289


>gi|50841725|ref|YP_054952.1| hypothetical protein PPA0232 [Propionibacterium acnes KPA171202]
 gi|50839327|gb|AAT81994.1| hypothetical protein PPA0232 [Propionibacterium acnes KPA171202]
          Length = 236

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 7   KRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +R  +      P AL ++  ++ AGLP+  AV  +      P   + RR+  +   G+  
Sbjct: 88  RRMEQHRAAQLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVPD 147

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S + + +     ++     +  +S     G  +SE L+  +  L+     K + +A    
Sbjct: 148 SRAWNDLA---SVEVWRDPAQDVSRAVDSGEGISELLSAHAAQLQVAAAEKTEKKARKAG 204

Query: 126 AK-ASAWIIGSLPFCVSTLVYFTSPGYM 152
                  +   LP  +   V     G +
Sbjct: 205 VDAIGPLVCCHLPAFLLVGVVPIIAGMV 232


>gi|149911343|ref|ZP_01899963.1| general secretion pathway protein F [Moritella sp. PE36]
 gi|149805583|gb|EDM65586.1| general secretion pathway protein F [Moritella sp. PE36]
          Length = 406

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 53/162 (32%), Gaps = 6/162 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   + A LP+ +++  +  QS    +++    V      G +L+ES + 
Sbjct: 65  TADMALLTRQLSTLIAASLPLEESLKAVAEQSEQPRIQNMILAVRSRVVEGHTLAESFAE 124

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    +  G+L + L  L+     R+ M +++    +       
Sbjct: 125 FP-----HAFDDLYCSMVASGEKSGHLDKVLNRLADYTEQRQKMASQLTQAMIYPVMLTL 179

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           +   +   + T V     G    +  +      + +A +  +
Sbjct: 180 VAIGVVSLLLTSVVPKVVGQFQHMGQELPQITQILIALSDFV 221


>gi|114049093|ref|YP_739643.1| type II secretion system protein [Shewanella sp. MR-7]
 gi|113890535|gb|ABI44586.1| type II secretion system protein [Shewanella sp. MR-7]
          Length = 421

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/172 (10%), Positives = 52/172 (30%), Gaps = 8/172 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMV 73
           D       I   + AG+P+   + ++          E    ++     G+ LS+S+    
Sbjct: 82  DIAMVTRQIATMLAAGVPLVTTIEMLGRGHEKQKMRELLGTILSEVQSGIPLSDSLR--- 138

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +        +    +  G+L      ++      + +K+K++       A   + 
Sbjct: 139 --PHRRYFDDLYVDLVAAGEHSGSLDAVFDRIATYREKAEALKSKIKKAMFYPAAVVVVA 196

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183
             +   +   V             +      +++G++        + +  +I
Sbjct: 197 ILVTTLLLLFVVPQFEDIFKSFGAELPAFTQLIIGISRFLQSSWYIFLAAII 248


>gi|284989775|ref|YP_003408329.1| Type II secretion system F domain-containing protein
           [Geodermatophilus obscurus DSM 43160]
 gi|284063020|gb|ADB73958.1| Type II secretion system F domain protein [Geodermatophilus
           obscurus DSM 43160]
          Length = 313

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 66/155 (42%), Gaps = 2/155 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   +++R    L +FP   +++  +V AG   + A+A +   S   +  E    +    
Sbjct: 157 LTQQVQRREELLLTEFPVVAELLALAVTAGESPTAAIARVTRLSGGELARELGAALGRAR 216

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ L++++ ++     L  ++ F   + V  + G  L+E L   +  +R+    K ++ 
Sbjct: 217 AGVPLADALQQVADRTSLDPLARFVDGLLVALERGTPLAEVLRAQAADVRE--AGKRRLL 274

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                 + +  +         T+++   PG ++++
Sbjct: 275 EAGGRKEIAMMVPVVFLVLPVTVLFALYPGLISIV 309


>gi|154148351|ref|YP_001406609.1| type II secretion system protein [Campylobacter hominis ATCC
           BAA-381]
 gi|153804360|gb|ABS51367.1| type II secretion system protein [Campylobacter hominis ATCC
           BAA-381]
          Length = 413

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 60/159 (37%), Gaps = 9/159 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
             +   ++  +     AG+ + D++  +   + D  ++  F  + +  + GLS++E+  +
Sbjct: 71  TQNLVASIRQLAVMTNAGISIHDSIKEVANSTEDKALKEIFASINDDLNSGLSMTEASEK 130

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
               +           +    +  GN++E+L+ L+++L +    + K +           
Sbjct: 131 FRSKLG-----DVVIAMISLGESTGNMAESLSKLAQMLNEVWENQRKFKKAMRYPM---V 182

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           I+ +L    + L+ +  P +  +         L      
Sbjct: 183 IMTALAIAFTVLMMYVVPKFREIFEELGADLPLPTRILL 221


>gi|83646646|ref|YP_435081.1| general secretion pathway protein F [Hahella chejuensis KCTC 2396]
 gi|83634689|gb|ABC30656.1| general secretion pathway protein F [Hahella chejuensis KCTC 2396]
          Length = 408

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 9/161 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       I   +++G+PV + ++ +  QS    VRS    V      G SL++S+S  
Sbjct: 69  ADLALLTRQIATLIQSGIPVEETLSAVASQSEKAKVRSMMLAVRAKVLEGYSLADSLSEF 128

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P               +  G+L   L  L+     R+  + K+Q  ++      ++
Sbjct: 129 PSAFP-----ELYRSTVAAGEHAGHLDLVLNRLADYTEQRQMSRQKIQLAAIYPIILTFV 183

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
              +   V  L+ +  P  + V ++  +    L      + 
Sbjct: 184 AFGI---VGFLLGYVVPDIIKVFVSKGQALPALTQVILALS 221



 Score = 40.1 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/129 (9%), Positives = 29/129 (22%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     +G+P+ DA+ +     S+            +                   
Sbjct: 277 FASTLSILNSSGVPLVDAMRIAGEVLSNQWLKLRVAEAAQKVREGGSLYKCLE-----QT 331

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G L E L   +    +    +        E      + G +  
Sbjct: 332 GYFPPMMIHMIASGEASGELGEMLERTASSQENDLQSRIATMVGLFEPLMLLVMGGVVLI 391

Query: 139 CVSTLVYFT 147
            V  ++   
Sbjct: 392 IVMAIMLPI 400


>gi|290559840|gb|EFD93163.1| type II secretion system protein [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 298

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 71/173 (41%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K    KRT    +    A+  I+  V +G+P+ +A+  +   +   +  EF+  +E    
Sbjct: 112 KLQAVKRTKLIEEQVVFAIREIMIKVGSGVPIFNALLDVANGNYGIISDEFKLAVEEIES 171

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+  ++++  + R +P Q +     +I    + G +++  L  ++ +L  ++    K  A
Sbjct: 172 GVPQNDALDHLARRVPSQSLRRAIDIILNAIKSGSDIAGTLELINDMLIKKQQSDMKSYA 231

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
             +   + A+++ S+      +  F   G +         +++      F + 
Sbjct: 232 GELTPMSMAYMLISVVVPSLGMSVFVILGSLAHFNTKAIIYIIPPFLLIFQIF 284


>gi|289759812|ref|ZP_06519190.1| predicted protein [Mycobacterium tuberculosis T85]
 gi|289715376|gb|EFD79388.1| predicted protein [Mycobacterium tuberculosis T85]
          Length = 241

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 60/161 (37%), Gaps = 1/161 (0%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                AL+++V  +RAG     A ++   ++  PV    R V     LG  ++  +    
Sbjct: 81  QALEAALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAA 140

Query: 74  RYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           R   L       +    + S  G  ++  +    R + +R+   A+V A    A+ASA I
Sbjct: 141 RSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAI 200

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           +  LP     L        ++ L+    G  LL V      
Sbjct: 201 LAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLES 241


>gi|166033071|ref|ZP_02235900.1| hypothetical protein DORFOR_02793 [Dorea formicigenerans ATCC
           27755]
 gi|166027428|gb|EDR46185.1| hypothetical protein DORFOR_02793 [Dorea formicigenerans ATCC
           27755]
          Length = 397

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 48/153 (31%), Gaps = 9/153 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV--------GQSSDPVRSEFRRVI 56
            + R  +   D+P  +  +   + AG+ V  A   IV         Q    V  E +   
Sbjct: 240 KQARQKQMCLDYPEVISKLTLLLGAGMTVRKAWIKIVNDYDSRIKQQGKRAVYEEMKYTC 299

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANL-SRILRDRKNM 115
                G+  +E   +  R    QE   F  ++S   + G      L  L +    + +  
Sbjct: 300 RQMDGGVPEAECYEKFGRRCGTQEYMRFGALLSQNLRKGTKGLNDLLRLEAIQSFEERKA 359

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
           +A+        K    +   L   +  +V    
Sbjct: 360 RARRLGEEAGTKLLLPMFLMLAEVLVIVVVPAF 392


>gi|170732851|ref|YP_001764798.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
 gi|169816093|gb|ACA90676.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
          Length = 332

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 57/158 (36%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           ++     R      + P  +D++      GL +  ++ V+          +  E      
Sbjct: 169 VRRRATARRQSLGAELPLLVDMLRLLQGVGLSLDQSIQVVTHDFQTMLPVLSWELGVAQR 228

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+ R+      +++     ++    + GG + E L      LR+ +    
Sbjct: 229 QFAAGRTREQSLQRLTNSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREGRRATL 288

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + Q   +  K +  +I +L   +  L+    PG M VL
Sbjct: 289 REQIGRLTVKMTGVMIVTLLPAL--LIVTAGPGIMTVL 324


>gi|294791162|ref|ZP_06756319.1| conserved hypothetical protein [Scardovia inopinata F0304]
 gi|294457633|gb|EFG25987.1| conserved hypothetical protein [Scardovia inopinata F0304]
          Length = 234

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 61/186 (32%), Gaps = 10/186 (5%)

Query: 1   MKHLIKKRTA---KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57
           ++   K R        ++  + +  +V  +R G  +  A   +          E      
Sbjct: 47  IRLRGKVRIRGADLLEENMSDIIAELVSLIRNGSSLISACEEVG--GCGFAVPEITEARL 104

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
            Q L    S     + R          S    + + LG   +  L  +    +  + ++ 
Sbjct: 105 RQMLLQRSSSHPKEVKRISQQ-----LSAACHLSTALGCGAASCLEAVEAEHKRNQGIED 159

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           + ++     + +  ++  LP  +       S     VL   P G + L +AA     G+M
Sbjct: 160 RRRSALAVPRMTLRVLLVLPILILLAGQMASSHTFTVLFTKPVGWICLLIAALLYGAGLM 219

Query: 178 VMRLMI 183
            +R +I
Sbjct: 220 WIRSLI 225


>gi|197117666|ref|YP_002138093.1| type II secretion system protein PulF [Geobacter bemidjiensis Bem]
 gi|197087026|gb|ACH38297.1| type II secretion system protein PulF [Geobacter bemidjiensis Bem]
          Length = 401

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 52/163 (31%), Gaps = 8/163 (4%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R      +       ++  ++AGLP+  A+  I+      +      + E    G++LS 
Sbjct: 57  RKKIGNKELLLFNQELLVLLKAGLPILQALDTILESGGGKLNEILSAIREDVKGGMALSA 116

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +  +  R  P               +  G+L + +      L+  +  + KV    +   
Sbjct: 117 AFEKFPRVFPH-----LYIASVRAGERTGDLPQTIRRYIAFLKRTEGFRGKVIGALIYPA 171

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
               ++      VS L+ +  P +  +  +      L      
Sbjct: 172 ---ILVTVAAVAVSLLLIYVVPTFSTIYADSGAALPLPTQMLI 211



 Score = 43.2 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 46/135 (34%), Gaps = 7/135 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI-ETQHLGLSLSESISRMV 73
                   +   + +G+P+ +A+ + VG  ++ V      +       G  LS ++  M 
Sbjct: 266 ALAGFTRTLATVLGSGIPIVEAMRMSVGTLNNKVLERGLLLAVHRVEEGSKLSTALEGMK 325

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
              P       +  +    +  G+L E L+++S    +       V   S+E      + 
Sbjct: 326 LMPP------LALRMLTVGETTGSLEEMLSDISDYFEEEIERDLHVLTTSIEPAIMVAMG 379

Query: 134 GSLPFCVSTLVYFTS 148
             +   + T+     
Sbjct: 380 VVIGVIIVTMYLPIF 394


>gi|241763429|ref|ZP_04761483.1| type II secretion system protein [Acidovorax delafieldii 2AN]
 gi|241367371|gb|EER61692.1| type II secretion system protein [Acidovorax delafieldii 2AN]
          Length = 416

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 57/173 (32%), Gaps = 9/173 (5%)

Query: 17  PNALDI---IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
           P+ L I   +   +RAGL + +A+ V++       V +  + +++    G  LS ++S  
Sbjct: 77  PDVLAITSELAIMLRAGLALDNALRVLIDMSHKPSVAALMQGILDAVKGGTPLSRALSHH 136

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                      F   +    +  G +S  L  L   +  ++ ++  V + ++       +
Sbjct: 137 RELFGD-----FYINMVRSGEASGQMSAVLDRLVEHMERQRALRDSVISATIYPAILLAV 191

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
                  +   V          + +       L +          ++  M+  
Sbjct: 192 AVLSLIAMLGFVVPQFEKLFTDMGDALPLPTRLVMGLGHAFTSYGLLMGMVAL 244


>gi|119773312|ref|YP_926052.1| general secretion pathway protein F [Shewanella amazonensis SB2B]
 gi|119765812|gb|ABL98382.1| general secretion pathway protein F [Shewanella amazonensis SB2B]
          Length = 407

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 8/169 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            +       I   V +GLPV +A+  +  Q   D + S    V      G SL++S++  
Sbjct: 67  AELALITRQIATLVASGLPVEEALKAVGQQCEKDRLASMVMAVRSRVVEGYSLADSMAEF 126

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G+L   L  L+     R+ +K+K+    +       +
Sbjct: 127 P-----HIFDDLYRSMVASGEKSGHLEVVLNRLADYTERRQQLKSKLTQAMIYPVMLTLV 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVM 179
              +   +   V          L  +       L+  +A     G+++M
Sbjct: 182 AIGVVAVLLAAVVPKVVSQFEHLGQELPATTKALMASSAFVQDYGLLIM 230


>gi|314977796|gb|EFT21890.1| type II secretion system F domain protein [Propionibacterium acnes
           HL045PA1]
          Length = 288

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 61/169 (36%), Gaps = 1/169 (0%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
            ++     +  +   +  G  +  AV +   ++   +     +++      +   E+  R
Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +   E       +++ +      S  L  ++  ++ R  +  +V+A   + + S  
Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            I  +   +   +      ++  L   P G +L+ VA    +I ++ M 
Sbjct: 224 QITLVTIAMFGGLLVIGRSFLAPL-ATPPGQVLVAVAVVMYVIALVQMY 271


>gi|91772318|ref|YP_565010.1| type II secretion system protein [Methanococcoides burtonii DSM
           6242]
 gi|91711333|gb|ABE51260.1| type II secretion system protein F domain [Methanococcoides
           burtonii DSM 6242]
          Length = 306

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/179 (11%), Positives = 50/179 (27%), Gaps = 4/179 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHL 61
            +   R  K     P A++ +     AG+   D    +   +    +  E + ++    +
Sbjct: 121 MVAGDRKRKIEQMLPYAINYMSAMSGAGVLPVDLFRALSNNEIYGEMCVESKYLVRDLEV 180

Query: 62  GLS-LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
             S L  ++  +    P   +  F          GG L       +         K K  
Sbjct: 181 LGSNLVSAMKNLASSTPSPMLQEFLQGAITVVTSGGELESYFKIKAEQYIIDNRQKQKEF 240

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             ++      ++   +   +  ++       M     D     +L      +   + ++
Sbjct: 241 LETLGLLGETYVTAFVAGPLFLIITIAIVSLMG--GADQVFLYILVYGLIPVGSAMFLV 297


>gi|37527504|ref|NP_930848.1| type IV pilin biogenesis protein [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786939|emb|CAE16013.1| Protein transport protein HofC [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 399

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/162 (9%), Positives = 52/162 (32%), Gaps = 10/162 (6%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
           N +  +   + +G+P+ + + +++ + +          + +    G S S S+       
Sbjct: 63  NFIRQLATLLSSGMPLLNCLNILIRECAHPLWHCVLLDISKKITRGESFSSSLKNYPFLF 122

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
           P          +    +L G L      L +    +  ++ K+            +   +
Sbjct: 123 PP-----LFCQLISVGELTGQLEVCCQLLVKQQEQQDKLQKKITKALRYPLIITIVASII 177

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
              +  ++ F  P +   + +     + L   +  +    ++
Sbjct: 178 ---ILLMLIFVLPEF-EHIYHSFDAQLPLLTRSLLITSNWLI 215


>gi|120597346|ref|YP_961920.1| type II secretion system protein [Shewanella sp. W3-18-1]
 gi|146294509|ref|YP_001184933.1| type II secretion system protein [Shewanella putrefaciens CN-32]
 gi|120557439|gb|ABM23366.1| type II secretion system protein [Shewanella sp. W3-18-1]
 gi|145566199|gb|ABP77134.1| type II secretion system protein [Shewanella putrefaciens CN-32]
 gi|319427874|gb|ADV55948.1| type IV pilus inner membrane protein, PilC [Shewanella putrefaciens
           200]
          Length = 421

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/180 (10%), Positives = 51/180 (28%), Gaps = 18/180 (10%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D   A   I   + AG+P+   + ++        +R     ++     G+ LS+++    
Sbjct: 82  DIAMATRQIATMLAAGVPLVTTIEILGRGHEKLKMRDLLGTILSEIQSGIPLSDALR--- 138

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +        +    +  G+L      ++      + +K+K++       A   + 
Sbjct: 139 --PHRRYFDDLYVDLVAAGEHSGSLDAVFDRIATYREKAEQLKSKIKKAMFYPAAVVVVA 196

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA------------AFMLIGIMVMRL 181
             +   +   V             +      + +                + +GI +   
Sbjct: 197 ILVTTLLLLFVVPQFEDIFKGFGAELPAFTQMIIGISRWLQSSWYLFFIAITVGIWLFVR 256


>gi|197121135|ref|YP_002133086.1| general secretion pathway protein F [Anaeromyxobacter sp. K]
 gi|220915836|ref|YP_002491140.1| general secretion pathway protein F [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|196170984|gb|ACG71957.1| general secretion pathway protein F [Anaeromyxobacter sp. K]
 gi|219953690|gb|ACL64074.1| general secretion pathway protein F [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 409

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 51/140 (36%), Gaps = 6/140 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           +   A   +   V AG+P+ +A+  +V Q   + ++     V +  + G +L+++++   
Sbjct: 70  NLAIATRQLSVLVGAGIPLVEALTALVDQVEHERLKRVLGDVKQRVNEGAALADALAAHP 129

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R       S     +    +  G L   L  L+     +  +++K+        A   I 
Sbjct: 130 R-----VFSTLYVNMIRAGEHSGALEVVLVRLADFTESQARLRSKIMGTMAYPAAMMVIG 184

Query: 134 GSLPFCVSTLVYFTSPGYMN 153
             +   + T+V         
Sbjct: 185 SVILGVLFTVVIPKITKIFE 204



 Score = 37.4 bits (85), Expect = 0.81,   Method: Composition-based stats.
 Identities = 14/133 (10%), Positives = 39/133 (29%), Gaps = 5/133 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                   +   +R+G+P+  A+ ++     +   ++                +  +   
Sbjct: 273 AISRFARTLSTLLRSGVPLLTAMEIVKNIVGNTRLADVIDQARDAIREGESIAAPLK--- 329

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                E       +    +  G L E L N+++   D+           +E      +  
Sbjct: 330 --RSGEFPPLVYHMVAIGERSGALEEMLGNVAKAYEDQVETTVSALTSLLEPLMIVAMGV 387

Query: 135 SLPFCVSTLVYFT 147
            + F V +++   
Sbjct: 388 VVAFIVFSVLLPI 400


>gi|330866887|gb|EGH01596.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 332

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
               +    +   + AG P+  ++ +++ Q      ++   R+ E    G  LS ++   
Sbjct: 62  AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEE 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    S     +    + GG L   L  LS  L   + ++ +V    +      ++
Sbjct: 122 GTQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +  +   ++ L+ +  P ++ +  +   G  +  +    + +G  +
Sbjct: 174 VIGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGQFL 217


>gi|322418665|ref|YP_004197888.1| Type II secretion system F domain-containing protein [Geobacter sp.
           M18]
 gi|320125052|gb|ADW12612.1| Type II secretion system F domain protein [Geobacter sp. M18]
          Length = 401

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 53/169 (31%), Gaps = 8/169 (4%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R      +       ++  ++AGLP+  A+  I+   +  +      + E    G++LS 
Sbjct: 57  RKKIGSKELLLFNQELLVLLKAGLPIIQALDTILESGTGKLNEILSAIREDIKGGMALSA 116

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +  +  R  P               +  G+L + +      L+  +  + K+ A      
Sbjct: 117 AFEKYPRVFPQ-----LYIASIRAGERTGDLPQTIRRYIAFLKRTEGFRGKIIAALFYPA 171

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
               +I      +S L+ +  P +  +         L           +
Sbjct: 172 ---ILITVATLAISMLLIYVVPTFSQIYAGSGSALPLPTQMLINFTGAL 217



 Score = 35.9 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 40/122 (32%), Gaps = 7/122 (5%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI-ETQHLGLSLSESI 69
                       +   + +G+P+ +A+ + VG  ++ V      +       G  LS ++
Sbjct: 262 AIRYSLAGFTRTLATVLGSGIPIVEAMRMSVGTLNNKVLERGLLMAVHRVEEGSKLSTAL 321

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
             M    P       +  +    +  G L E L ++S    D       V + ++E    
Sbjct: 322 ENMKLLPP------LALRMLSVGETTGALEEMLGDISDYFEDEIEKNLHVLSTAIEPAIM 375

Query: 130 AW 131
             
Sbjct: 376 VV 377


>gi|85986487|emb|CAF22035.1| putative pilus assembly protein PilC [Legionella longbeachae]
          Length = 406

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/186 (11%), Positives = 57/186 (30%), Gaps = 14/186 (7%)

Query: 1   MKHLIKKR--------TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSE 51
           +  ++KKR              D       +   + +G+P+  +  ++   Q++  ++  
Sbjct: 46  ISKIVKKRSPILKRNSKKVKSSDITVFSRQLATMIESGIPLVQSFDIVAKGQTNTRLKEL 105

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111
             ++      GL+LSE++ +   +      +     +    +  G+L   L  ++     
Sbjct: 106 IEQIKHDVETGLTLSEALKKHPSH-----FNDLFCNLVDAGEKSGSLDIMLNKIATYKEK 160

Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
            + +K K++       A   +   +   +   V             D        V  + 
Sbjct: 161 IETIKKKIKKALTYPMAVIVVALIVTAGLLIFVVPQFEALFKGFGADLPMMTKTVVELSK 220

Query: 172 MLIGIM 177
                 
Sbjct: 221 FFQSYW 226



 Score = 36.6 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/136 (9%), Positives = 43/136 (31%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72
                    +  +  AGLP+ +A+  + G + + + S    ++ +    G  +++++   
Sbjct: 271 AAIARFARTLSITFAAGLPLVEALKSVAGATGNIIFSNATNKIRDEVSTGQQMNKAMEN- 329

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 Q        +    +    L   L+ ++    +  +      +  +E      +
Sbjct: 330 -----TQLFPNMVIQMVAIGEESCALERMLSKVADFYEEDVDNAVDSLSSLLEPIIMTIL 384

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V ++     
Sbjct: 385 GVLVGGLVVSMYLPIF 400


>gi|331082850|ref|ZP_08331972.1| hypothetical protein HMPREF0992_00896 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400179|gb|EGG79828.1| hypothetical protein HMPREF0992_00896 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 389

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 14/158 (8%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG----------QSSDPVRSEFRRVIET 58
             +   D+P+ +  +V  +RAG  +  A+  I            +       E  R  + 
Sbjct: 235 RKEMQRDYPDIIQKLVLFLRAGFTIRKAMEKIADGYLRSREKYHEKERSAYEEIVRTCKE 294

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKA 117
              G+  +E+  R      + +    S ++     +   NL E L     +  D +   A
Sbjct: 295 MQSGIYEAEAYERFGTRCGISQYKILSVLLVQNLKKGNQNLLELLEREEAVAEDERKRSA 354

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           KV+      K    ++  L   +  L+    P + + L
Sbjct: 355 KVRGEEASTKLLLPMVLQLIVVLMILMI---PAFFSFL 389


>gi|167586040|ref|ZP_02378428.1| type II secretion system protein [Burkholderia ubonensis Bu]
          Length = 336

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 43/138 (31%), Gaps = 6/138 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   ++AGLP++ A+ ++   +  D +      +      G   + +++R      
Sbjct: 2   FTQQLASLLQAGLPLAPALEMLARTRGPDGMPRIAAGLAREIGGGRRFAAALARYPTQFG 61

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G L   LA ++         + K++A      A      ++ 
Sbjct: 62  -----SLYRQLIEIGETSGALGPVLARVADHRERADAQRRKLRAALAYPVAVILFALAIT 116

Query: 138 FCVSTLVYFTSPGYMNVL 155
             +   V  T     +  
Sbjct: 117 IALMLWVVPTFRQIFDGF 134



 Score = 35.1 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 40/130 (30%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+P++DA A +   +          R+      G  L++++     +  
Sbjct: 206 WCRSLATLLGAGVPLADAFATLERTAGHPVFEQATARIAARVLRGARLADAMHAAGCFPD 265

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                         ++  G L   LA+++ +   + +      A   E      +   + 
Sbjct: 266 DVVQP------IAVAEETGALDTMLADIAALCERQLDAHLDALAALGEPLIVIVLGALVG 319

Query: 138 FCVSTLVYFT 147
             V  +    
Sbjct: 320 SLVVAMYLPI 329


>gi|253576286|ref|ZP_04853617.1| type II secretion system protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844413|gb|EES72430.1| type II secretion system protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 291

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 69/157 (43%), Gaps = 8/157 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV----GQSSDPVRSEFRRVI 56
           +   +++R    L + P  L+ IV  V AG  V  A+ + +     Q   P+  E  ++ 
Sbjct: 134 LHRKVQRREQAVLLELPELLNKIVLLVGAGSTVQQAMKLCLERKREQIGHPLYRELLQMQ 193

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTV-ISVQSQLGGNLSEALANLSRILRDRKNM 115
           +    G S  +++    +   +QEVS F+T  +    + G + + AL +LS  L +++  
Sbjct: 194 KEWEGGDSFQQAMEGFSKRCGIQEVSAFTTAVLLNYRRGGEDFALALRDLSHSLWEKRKA 253

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
             +      E  +S  +   +   ++ L+   +P +M
Sbjct: 254 VGR---TLGEQASSKLVFPMVLLFMAVLILVGAPAFM 287


>gi|307825437|ref|ZP_07655656.1| Type II secretion system F domain protein [Methylobacter
           tundripaludum SV96]
 gi|307733612|gb|EFO04470.1| Type II secretion system F domain protein [Methylobacter
           tundripaludum SV96]
          Length = 404

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 61/175 (34%), Gaps = 7/175 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHLGLS 64
           K+T     D       +   + +GLP+  ++ V++   + ++ V     RV+E    G +
Sbjct: 57  KQTKLSQKDIALFTGELATLLESGLPLDKSLLVLIDLTEDNERVTKLIGRVLEKVKGGAT 116

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L++++ +          S F   +    + GG+L E L  LS  L   + +K  V    +
Sbjct: 117 LADALEKQS-----GIFSKFYLNMIRAGEAGGSLGEVLGRLSEYLERSRELKETVSTALI 171

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
                  +  +  F + T V                    + V  A  L     M
Sbjct: 172 YPAILLIMSLASLFVMLTFVVPQFSEMFESAGKALPVSTQIVVGLAEWLQSYWWM 226



 Score = 34.7 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 12/137 (8%), Positives = 44/137 (32%), Gaps = 7/137 (5%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESIS 70
              +  N    +   +  G+ +  A+ ++     +  + +  +   E    G ++S+++ 
Sbjct: 266 LNKETANISRTLGTLLGNGVSILAALVIVRETVDNLVLAAAIQDTEEQLKQGRNMSDALL 325

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
                         +  +    +  G L E L  ++ I   +  +  +     +E     
Sbjct: 326 E------KGIFPKMAMQMIKMGEETGRLEEMLLRVATIYDKQLRVAIQRMLALLEPALII 379

Query: 131 WIIGSLPFCVSTLVYFT 147
            +   +   + +++   
Sbjct: 380 SLGLMIAGIIVSILLAI 396


>gi|257485376|ref|ZP_05639417.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 240

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
               +    +   + AG P+  ++ +++ Q      R+   R+ E    G  LS ++   
Sbjct: 62  AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGKPLSVALEEE 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    S     +    + GG L   L  LS  L   + ++ +V    +      ++
Sbjct: 122 GTQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +  +   ++ L+ +  P ++ +  +   G  +  +    + +G  +
Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGQFL 217


>gi|163840097|ref|YP_001624502.1| tyrosine phenol-lyase [Renibacterium salmoninarum ATCC 33209]
 gi|162953573|gb|ABY23088.1| tyrosine phenol-lyase [Renibacterium salmoninarum ATCC 33209]
          Length = 161

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 49/100 (49%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
             I +R A+ L +FP+  +++  +VRAG   + A+  +   S   +  EF R++     G
Sbjct: 1   MKITRREARMLAEFPSLAELMALAVRAGESATGALERVCRTSQGDLAQEFARILGQTRSG 60

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102
           + L+E+++   R   +  +  F+  ++V  + G  L+   
Sbjct: 61  VPLTEALAAFSRRTKIAPLVRFTDGLTVAVERGTPLAGVF 100


>gi|153811267|ref|ZP_01963935.1| hypothetical protein RUMOBE_01659 [Ruminococcus obeum ATCC 29174]
 gi|149832765|gb|EDM87849.1| hypothetical protein RUMOBE_01659 [Ruminococcus obeum ATCC 29174]
          Length = 342

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 54/155 (34%), Gaps = 8/155 (5%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-------RVIETQ 59
           KR  + L D+P+ +      ++AG+ V  A   I          E R             
Sbjct: 188 KRAEQLLMDYPSLIMKFTLLIQAGMTVRRAFQKISSDYLRNCPKEGRYAYEAVTTTCHEM 247

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAK 118
             G++  E+  R        +   FST++     + G  +++ L   +    D +  KA+
Sbjct: 248 DSGVAELEAYRRFGERCGQMKYKTFSTILIQNLQKGGHRMADLLEKEALEAWDERKRKAR 307

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153
           V   +   K    +I  L   ++ ++      +  
Sbjct: 308 VMGETAATKLLVPMIMMLAVVMAIIMIPAFLSFYG 342


>gi|330816719|ref|YP_004360424.1| Type II secretion system protein [Burkholderia gladioli BSR3]
 gi|327369112|gb|AEA60468.1| Type II secretion system protein [Burkholderia gladioli BSR3]
          Length = 329

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++     R     ++ P  +D++      GL +  ++ VI          +  E      
Sbjct: 166 IRRKAAARRESVAEEMPLFVDMLRLLQGVGLSLDQSMQVISHDFTTMLPVLSWELGVAQR 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S++R+      +++     ++    + GG + E L      LRD +    
Sbjct: 226 QFAAGRTREQSLARLTSSFDNEDLRSIVRLLIQVDKHGGAVQEPLRMFGDRLRDGRRALL 285

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +   +  K +  +I +L   +  L+    PG M V+
Sbjct: 286 RERIGRLTVKMTGVMIVTLLPAL--LIVTAGPGIMTVV 321


>gi|310829688|ref|YP_003962045.1| putative type II secretion pathway protein XcpS [Eubacterium
           limosum KIST612]
 gi|308741422|gb|ADO39082.1| putative type II secretion pathway protein XcpS [Eubacterium
           limosum KIST612]
          Length = 396

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/176 (10%), Positives = 55/176 (31%), Gaps = 7/176 (3%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLS 64
           KK       +  +    I   + +G+ V  A+++++ +     V   ++ +      G++
Sbjct: 49  KKAYKMKNMELSDFSREIENMLASGITVIRALSIMMERNIKPNVAKVYKALYREVQQGIT 108

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           LSE++       P          +    +  G ++E    ++        +  K++   +
Sbjct: 109 LSEAMENSRGSFPQ-----LIINMFRAGESSGQMAETAHKMALYYEKEHRLHTKIRNAMI 163

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA-FMLIGIMVM 179
                      +   + T +          +        ++ +  + FM      +
Sbjct: 164 YPILLLVATVVVVIGLFTFILPQFFDLFEGMDAALPAITVMVIGISNFMTANWYWL 219


>gi|257784834|ref|YP_003180051.1| type II secretion system protein [Atopobium parvulum DSM 20469]
 gi|257473341|gb|ACV51460.1| type II secretion system protein [Atopobium parvulum DSM 20469]
          Length = 204

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 59/146 (40%), Gaps = 3/146 (2%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSE 67
               L + P  +DI++  + +GL    A+ +   + S  +  E      T  LG  +  E
Sbjct: 57  RKSCLREMPEMIDILILGLSSGLSFDSALDLYCLRESGELSKELSNAHMTWKLGANTREE 116

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++++M   + +  +  F+TV++     G  L+E L   + +LRD +    + +   +  K
Sbjct: 117 ALNQMAARVGVPSLKSFATVVNEALTFGTPLAEILDRQASVLRDEQRSLLETEIEKIPIK 176

Query: 128 ASAWIIGSLPFCVSTLVY--FTSPGY 151
               +   +   +   +      P +
Sbjct: 177 MLIPLGTLIVPAMLLAILGPLLGPAF 202


>gi|254517129|ref|ZP_05129187.1| general secretion pathway protein F [gamma proteobacterium NOR5-3]
 gi|219674634|gb|EED31002.1| general secretion pathway protein F [gamma proteobacterium NOR5-3]
          Length = 401

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 52/158 (32%), Gaps = 6/158 (3%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +RAGLP+  ++ V++  +S   + +    V+++   G +LS ++            
Sbjct: 71  LAVLLRAGLPLDRSLKVLIEMASLPSMAALLSDVLKSVKDGKALSIALEPYSELFG---- 126

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F   +    +  G +S  L  L   L   K  +  V +  +       +       + 
Sbjct: 127 -RFYLSMLRSGEASGEMSAVLDRLVAHLETAKATRDSVVSALIYPAILLVVAVLSIVVML 185

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             V        N +           + AA  + G   +
Sbjct: 186 AFVVPQFETLFNDMGESLPTLTRAVINAADFVTGWFWL 223


>gi|154174517|ref|YP_001408338.1| type II secretion system protein [Campylobacter curvus 525.92]
 gi|112803195|gb|EAU00539.1| type II secretion system protein [Campylobacter curvus 525.92]
          Length = 415

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 55/166 (33%), Gaps = 6/166 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
               +  +     AG+ + D++  +   + D       + I           +       
Sbjct: 76  LVATIRQLSVMTNAGISIHDSIKEVANSTEDKRLKVIFQTINEDLNQG----ASLTDSML 131

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
              QE+   S  +    +  GN++++L+ L+ IL++  + + K +            I  
Sbjct: 132 AFQQEMGDVSIAMIRLGESTGNMADSLSKLASILQEVWDNQQKFKKAIRYPITVICAIIL 191

Query: 136 LPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVM 179
               + T+V          L  +      +LLG+  A    G  ++
Sbjct: 192 AFIVLMTMVVPKFREIFEQLNAELPLPTKILLGIEYAMNNYGFYIL 237


>gi|325275692|ref|ZP_08141581.1| general secretion pathway protein F [Pseudomonas sp. TJI-51]
 gi|324099178|gb|EGB97135.1| general secretion pathway protein F [Pseudomonas sp. TJI-51]
          Length = 401

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 59/156 (37%), Gaps = 9/156 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   ++AGLP+++A+  +  Q +    R   R V E    G +L+++++   R  P
Sbjct: 67  LTRQLATLLQAGLPLTEALQAVAEQGTRRQERQVLRGVAERVAEGHALAQALAHYPRAFP 126

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +   +  +       +  G L++ L  L+    D + ++ KVQ   +       ++    
Sbjct: 127 VIYRATVAAA-----ERSGRLADVLERLAAHGEDEQALRQKVQLAMVYPV---ILLAVSL 178

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             V  L+ +  P  +     D     L       + 
Sbjct: 179 LVVGFLLGYVVPDVVQAFSRDQARLPLATQVLIALS 214


>gi|213855587|ref|ZP_03383827.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 289

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q          R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P          +    +L G L+E    L+R  + ++ +   V+           
Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPA---I 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183
           I+      V  +++F  P +  +  +      LL      +   G     L++
Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGPAWGWLIL 221


>gi|314972765|gb|EFT16862.1| type II secretion system F domain protein [Propionibacterium acnes
           HL037PA3]
          Length = 288

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/169 (11%), Positives = 60/169 (35%), Gaps = 1/169 (0%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
            ++     +  +   +  G  +  AV +   ++   +     +++      +   E+  R
Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGAVDQLVSRLDGRMEPREAFQR 163

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +   E       +++ +      S  L  ++  ++ R  +  +V+A   + + +  
Sbjct: 164 MADELDSSEADAVLASLALAATHPRGASVTLKAIAGTIQQRLKVLRQVEAERSKPRNAVR 223

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            I  +   +  ++      ++  L   P G +L+  A    +  ++ M 
Sbjct: 224 QITLVTIAMFGVLLVVGRSFLAPL-ATPPGQVLVTAAVVMYVTALVQMY 271


>gi|327456790|gb|EGF03445.1| type II secretion system F domain protein [Propionibacterium acnes
           HL087PA3]
          Length = 288

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 61/169 (36%), Gaps = 1/169 (0%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
            ++     +  +   +  G  +  AV +   ++   +     +++      +   E+  R
Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +   E       +++ +      S  L  ++  ++ R  +  +V+A   + + S  
Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            I  +   +   +      ++  L   P G +L+ VA    +I ++ M 
Sbjct: 224 QITLVTIAMFGGLLVIGRSFLAPL-ATPPGQVLVAVAVVMYVIALVQMY 271


>gi|270156625|ref|ZP_06185282.1| type IV pilus assembly protein PilC [Legionella longbeachae D-4968]
 gi|289164922|ref|YP_003455060.1| pilus assembly protein PilC [Legionella longbeachae NSW150]
 gi|269988650|gb|EEZ94904.1| type IV pilus assembly protein PilC [Legionella longbeachae D-4968]
 gi|288858095|emb|CBJ11957.1| pilus assembly protein PilC [Legionella longbeachae NSW150]
          Length = 406

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/186 (11%), Positives = 57/186 (30%), Gaps = 14/186 (7%)

Query: 1   MKHLIKKR--------TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSE 51
           +  ++KKR              D       +   + +G+P+  +  ++   Q++  ++  
Sbjct: 46  ISKIVKKRSPILKRNSKKVKSSDITVFSRQLATMIESGIPLVQSFDIVAKGQTNTRLKEL 105

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111
             ++      GL+LSE++ +   +      +     +    +  G+L   L  ++     
Sbjct: 106 IEQIKHDVETGLTLSEALKKHPSH-----FNDLFCNLVDAGEKSGSLDIMLNKIATYKEK 160

Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
            + +K K++       A   +   +   +   V             D        V  + 
Sbjct: 161 IETIKKKIKKALTYPMAVIVVALIVTAGLLIFVVPQFEALFKGFGADLPMMTKTVVELSK 220

Query: 172 MLIGIM 177
                 
Sbjct: 221 FFQSYW 226



 Score = 35.9 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/136 (10%), Positives = 44/136 (32%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72
                    +  +  AGLP+ +A+  + G + + + S    ++ +    G  +++++   
Sbjct: 271 AAIARFARTLSITFAAGLPLVEALKSVAGATGNIIFSNATNKIRDEVSTGQQMNKAMEN- 329

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 Q        +    +  G L   L+ ++    +  +      +  +E      +
Sbjct: 330 -----TQLFPNMVIQMVAIGEESGALERMLSKVADFYEEDVDNAVDSLSSLLEPIIMTIL 384

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V ++     
Sbjct: 385 GVLVGGLVVSMYLPIF 400


>gi|118497706|ref|YP_898756.1| Type IV pili polytopic inner membrane protein [Francisella
           tularensis subsp. novicida U112]
 gi|194323678|ref|ZP_03057454.1| bacterial type II secretion system protein F domain protein
           [Francisella tularensis subsp. novicida FTE]
 gi|208779771|ref|ZP_03247115.1| bacterial type II secretion system protein F domain protein
           [Francisella novicida FTG]
 gi|254374524|ref|ZP_04990005.1| type IV pili polytopic inner membrane protein [Francisella novicida
           GA99-3548]
 gi|82453034|gb|ABB76145.1| PilC [Francisella novicida]
 gi|118423612|gb|ABK90002.1| Type IV pili polytopic inner membrane protein [Francisella novicida
           U112]
 gi|151572243|gb|EDN37897.1| type IV pili polytopic inner membrane protein [Francisella novicida
           GA99-3548]
 gi|194322042|gb|EDX19524.1| bacterial type II secretion system protein F domain protein
           [Francisella tularensis subsp. novicida FTE]
 gi|208744226|gb|EDZ90526.1| bacterial type II secretion system protein F domain protein
           [Francisella novicida FTG]
 gi|328675935|gb|AEB28610.1| Type IV pili polytopic inner membrane protein [Francisella cf.
           novicida 3523]
          Length = 409

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 50/155 (32%), Gaps = 10/155 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVA--VIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
            D       +    +AG+P+  +    ++  +    ++     + +    G S S+++S 
Sbjct: 69  QDITEMTRQLATMTKAGIPIIKSFEVFIMGIRKHPRLKILAIEIKQAIEGGESFSKALSN 128

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +             +    +  GNL   L  ++      +++K KV+           
Sbjct: 129 FPKI-----FDKLYVGLITAGEESGNLDLMLNKIADQREALQSIKKKVKKALSYPIIVCI 183

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
           I          L+ F  P +  + IN  +    + 
Sbjct: 184 IAAG---VTGILLTFAVPAFSAMFINSGKPLPAIT 215



 Score = 33.9 bits (76), Expect = 9.5,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 49/149 (32%), Gaps = 15/149 (10%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           F          +  +V++G+ ++ A+ ++     +         + ++ + G S  E+I 
Sbjct: 272 FKSSLARFASTLEITVQSGMSLTRALDMVSLATGNAKYDQAALDIKKSINEGASFKEAIV 331

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
                       F    +    +  G L   L NL+R+ ++  +        ++    S+
Sbjct: 332 ETGN------FPFLVEQMIAVGEESGALETMLGNLNRVYQEEVD--------TLVGSLSS 377

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDP 159
            +   +   +  +V F        +    
Sbjct: 378 MLEPLIMIVLGGVVGFLVVSMYMPMFQMG 406


>gi|332359563|gb|EGJ37382.1| bacterial type II secretion system protein F [Streptococcus
           sanguinis SK1056]
          Length = 408

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 51/174 (29%), Gaps = 10/174 (5%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
               L D       +   + +G+P+++AV ++  Q+         +VI       +    
Sbjct: 57  KKIKLKDISLFCKQMSVMLNSGIPLNNAVDILEQQTDAKNLKASLKVISKGLKEGN---- 112

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                              +    +  G L E L  +S           +++   +    
Sbjct: 113 QLSKALIEQNGLFPDLLIRMVQAGEKTGKLDEVLERMSEHYNKELKTSRQIRGAMIYPAV 172

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGIMVM 179
            A++  +       L+Y   P +  +         L   + +AA+  +     +
Sbjct: 173 LAFLAVAATLV---LLYVVIPNFSGIFEQSGVALPLPTRIVLAASNFVQSYWYI 223



 Score = 39.7 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+ +A+      +++ V  +  R+         L +           
Sbjct: 270 FASTLATLTSAGIPLVEAIDSAAATTNNAVVIDKLRIANE-----GLQKGERLTGMLTST 324

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G+L   L   S    +      K     +E      +   +  
Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLNKTSDFYEEELEAAIKQLLSLLEPAMIIIMGVIIGG 384

Query: 139 CVSTLVYFTS 148
            V++++    
Sbjct: 385 IVASVMLPMF 394


>gi|254483146|ref|ZP_05096380.1| Bacterial type II secretion system protein F domain [marine gamma
           proteobacterium HTCC2148]
 gi|214036668|gb|EEB77341.1| Bacterial type II secretion system protein F domain [marine gamma
           proteobacterium HTCC2148]
          Length = 401

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 55/168 (32%), Gaps = 6/168 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   +RAGLP+  A+ V++  +    ++     +++    G +LS ++    +   
Sbjct: 67  MTSELAVLLRAGLPLDRALKVLIDMAVQPQMQFLLNDLLKAVKGGKALSIAMQSHEKIFG 126

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                 F   +    +  G LSE L  L   L + K  +  V +  +       +     
Sbjct: 127 -----SFYISMVRSGEASGQLSEVLDRLVEYLENAKANRDSVVSALIYPAILLVVAVLSI 181

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             +   V          +         + ++ A  +     + L++  
Sbjct: 182 VLMLGFVVPQFESLFEDMGEALPLLTQMVLSGADFIKSWGWLLLIVII 229


>gi|210614117|ref|ZP_03290053.1| hypothetical protein CLONEX_02266 [Clostridium nexile DSM 1787]
 gi|210150818|gb|EEA81826.1| hypothetical protein CLONEX_02266 [Clostridium nexile DSM 1787]
          Length = 430

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 52/156 (33%), Gaps = 9/156 (5%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--------VRSEFR 53
           +   K R  + L D+P  ++     +  G+   +    IV    +            E R
Sbjct: 270 QKARKARKEQMLTDYPEIINKFALLLSTGMTTKNVWERIVKNYEEQKICTGERAAYEEMR 329

Query: 54  RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDR 112
                   G++ +E+  R  +   +     F  +++    +    +++ L N S    + 
Sbjct: 330 YTCNEMQSGITEAEAYERFGKRCGISVYMKFGALLAQNLKKGTKGMTDLLRNESDQAFEN 389

Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
           +  +AK        K  A + G L   +  ++    
Sbjct: 390 RKSRAKRLGEEAGTKLLAPMFGMLAIVLVIVIVPAF 425


>gi|323934475|gb|EGB30883.1| general secretion pathway protein F [Escherichia coli E1520]
          Length = 398

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 60/198 (30%), Gaps = 29/198 (14%)

Query: 5   IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62
           +K R  +    +       +     A LP+ +++AVI  QSS+  +     +V      G
Sbjct: 49  VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLGDVLNQVRSAILEG 108

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             LS+++                  +    +  G L+  L  L+    +R+ +++K+   
Sbjct: 109 HPLSDALQHFPTL-----FDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQS 163

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP-------------------RGHM 163
            +       +       V  L+    P      ++                      G  
Sbjct: 164 LIYP---CMLTTVAIGVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRTGPT 220

Query: 164 LLGVAAAFMLIGIMVMRL 181
           LL       +   + ++ 
Sbjct: 221 LLATVFIVAVGFWLWLKR 238


>gi|319937245|ref|ZP_08011652.1| type II secretion system protein [Coprobacillus sp. 29_1]
 gi|319807611|gb|EFW04204.1| type II secretion system protein [Coprobacillus sp. 29_1]
          Length = 396

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 57/180 (31%), Gaps = 9/180 (5%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSE 67
               L D       +   + +G+ +   + +I    +   +++ ++ V      GLSLS 
Sbjct: 52  KKMKLKDLSEFCRELGTMLSSGISLIMTINIITKRTTDPKLQAVYKDVYVKLQQGLSLSS 111

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++       P          +   S+  G +      LS        ++ KV++  +   
Sbjct: 112 ALEAQGELFP-----SLMINMFRASESTGMMDRTAMKLSVQFDKDNKLQNKVKSAMLYPM 166

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
               +   +   V T++    P + +V    P   +   +      +       +I   V
Sbjct: 167 ILIVVTVCVVIAVFTMIL---PNFFDVFEGTPIPLITQIMFGISKAMTAYWEWFLIGILV 223


>gi|260892929|ref|YP_003239026.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
 gi|260865070|gb|ACX52176.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
          Length = 305

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 60/147 (40%), Gaps = 1/147 (0%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
               P  +D++  SV AGL    A+  +V +   P+  E  R ++   +G    E++  M
Sbjct: 158 RRQLPEVIDLLTVSVEAGLGFEGALTRVVEKMDGPLPQEICRALQEIRVGRPRREALREM 217

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA-SAW 131
            + + ++E+  F   + +  Q+G +L+  L   S+ +R R+  +A+  A     K     
Sbjct: 218 AQRIGVEELLSFVGAVIMAEQMGVSLARVLRLQSQEIRRRRRQQAQEAAFKAPVKMLLPL 277

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLIND 158
           ++   P     L+       M      
Sbjct: 278 VLCIFPATFVVLLGPAVLRIMRFFGKS 304


>gi|288814578|gb|ADC54375.1| putative general secretion pathway protein F [Stenotrophomonas
           maltophilia]
          Length = 399

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 58/166 (34%), Gaps = 8/166 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           +   A   +   + A LP+  A++ ++ Q+    V      V      G  L+ +++   
Sbjct: 61  ELAWATRQLASLLAASLPLEGALSAVIEQAERPHVAQALTAVRADVRAGQRLTVALAARP 120

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R  P          +    +  G+L+  +  L+  + +R  ++AKV    +   A + + 
Sbjct: 121 RDFPP-----IYRALVGAGEDSGDLARVMERLADYIEERNALQAKVLTAFIYPAAISLVS 175

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIM 177
            ++   + + V                    ++L  +A     G+ 
Sbjct: 176 VAIVIFLLSYVVPQVVTAFVQARQTLPMLTQVMLAASAFVRSWGVW 221



 Score = 37.8 bits (86), Expect = 0.69,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 38/130 (29%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+P+  A+        +  +      V      G +L  ++        
Sbjct: 268 FASTLAILLDAGVPLLRALEAARQTLGNALLARCADDVSARVREGAALGAALKV------ 321

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +        +    +  G+L+  L   ++ +      +A      +E      + G + 
Sbjct: 322 QKVYPPILVHLVASGEKTGSLAPLLDRAAQTISREIERRAMALTALLEPTMILVMGGVVL 381

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 382 TIVLAVLMPI 391


>gi|238791187|ref|ZP_04634826.1| Type II secretion system protein [Yersinia intermedia ATCC 29909]
 gi|238729320|gb|EEQ20835.1| Type II secretion system protein [Yersinia intermedia ATCC 29909]
          Length = 366

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 51/143 (35%), Gaps = 6/143 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
           +        +   ++AGLP+ +++ ++  +    P R   + + +    GLSLSE+++R 
Sbjct: 25  ERLVAVTRQLATLLQAGLPLVNSLQLLAKEIDALPWRCLLQDISQQVSQGLSLSEAMARY 84

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P          +    +L GNL +    L +    ++ ++ KV            I
Sbjct: 85  PHTFP-----RLYPPVIAMGELTGNLEQCCIQLVQHQERQQKLQKKVIKALKYPVFVCII 139

Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155
              +   +  +V           
Sbjct: 140 AMVVSLVMLVMVLPEFAQIYQSF 162



 Score = 34.7 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 41/134 (30%), Gaps = 6/134 (4%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74
                  +  +  AGLP++  +   +   ++   +   R + +  + G  L  ++++  R
Sbjct: 231 LSQIFQTLAITQHAGLPLTAGLDAALLSINNCAYQQALRHIQQQINQGEPLHTALAQQHR 290

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
             P          +    +  G L   L  L+   + +    A      +E      I  
Sbjct: 291 LFPP-----LCQQMVRVGEESGALDVLLEKLASWHQQKTQDLADNLTQMLEPLLMLIIGS 345

Query: 135 SLPFCVSTLVYFTS 148
            +   V  +     
Sbjct: 346 IVGVLVIAMYLPIF 359


>gi|307293362|ref|ZP_07573208.1| general secretion pathway protein F [Sphingobium chlorophenolicum
           L-1]
 gi|306881428|gb|EFN12644.1| general secretion pathway protein F [Sphingobium chlorophenolicum
           L-1]
          Length = 405

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/171 (12%), Positives = 56/171 (32%), Gaps = 7/171 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            +       +   ++   P+ +++  I  QS    VR+   +V      G  L++++   
Sbjct: 66  KELTLFTRQLSTLIQV-SPLEESLRTIGRQSEQPHVRAIVAKVHSGVLEGRRLADALGAE 124

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +  P          +    +  G+L   +  LS ++  +  +++KV          A  
Sbjct: 125 PKSFPP-----LYRAMVSAGESSGSLPTIMDRLSDLMERQAVIRSKVLTTIAYPSVLAAF 179

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
              +   +   V        + +         + +  +  L G   + LM+
Sbjct: 180 AVCVVAALMIFVVPKVVEQFDTVGQQLPLLTRMVMGISTFLAGYWWLLLML 230


>gi|323529408|ref|YP_004231560.1| Type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1001]
 gi|323386410|gb|ADX58500.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1001]
          Length = 319

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 68/152 (44%), Gaps = 4/152 (2%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSLSES 68
            ++ FP+ALD++   V AGL +  A+  + G+    S  V SE + ++     G +  ++
Sbjct: 166 IVEGFPDALDLLTVCVEAGLGMDAALMRVAGEMQLASPEVASELQLMLLELRSGFTKEKA 225

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME-AK 127
           +        + ++  F++++    + G ++  +L  +S  LR R+ M+A+ +A  +    
Sbjct: 226 LRNFALRTGVDDIDTFASMLVQADRFGTSIGASLRVMSDTLRTRRRMRAEERAAKIALKL 285

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159
               I    P  ++ L+         VL+   
Sbjct: 286 LFPLIFCIFPALMTVLMGPAFIHIYRVLLPTL 317


>gi|332678420|gb|AEE87549.1| Type IV pili polytopic inner membrane protein [Francisella cf.
           novicida Fx1]
          Length = 409

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 50/155 (32%), Gaps = 10/155 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVA--VIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
            D       +    +AG+P+  +    ++  +    ++     + +    G S S+++S 
Sbjct: 69  QDITEMTRQLATMTKAGIPIIKSFEVFIMGIRKHPRLKILAIEIKQAIEGGESFSKALSN 128

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +             +    +  GNL   L  ++      +++K KV+           
Sbjct: 129 FPKI-----FDKLYVGLITAGEESGNLDLMLNKIADQREALQSIKKKVKKALSYPIIVCI 183

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
           I          L+ F  P +  + IN  +    + 
Sbjct: 184 IAAG---VTGILLTFAVPAFSAMFINSGKPLPAIT 215


>gi|320180162|gb|EFW55101.1| General secretion pathway protein F [Shigella boydii ATCC 9905]
          Length = 398

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 60/198 (30%), Gaps = 29/198 (14%)

Query: 5   IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62
           +K R  +    +       +     A LP+ +++AVI  QSS+  +     +V      G
Sbjct: 49  VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLADVLNQVRSAILEG 108

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             LS+++                  +    +  G L+  L  L+    +R+ +++K+   
Sbjct: 109 HPLSDALQHFPTL-----FDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQS 163

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP-------------------RGHM 163
            +       +       V  L+    P      ++                      G  
Sbjct: 164 LIYP---CMLTTVAIGVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRTGPT 220

Query: 164 LLGVAAAFMLIGIMVMRL 181
           LL       +   + ++ 
Sbjct: 221 LLATVFIVAVGFWLWLKR 238


>gi|239917280|ref|YP_002956838.1| Flp pilus assembly protein TadC [Micrococcus luteus NCTC 2665]
 gi|281414242|ref|ZP_06245984.1| Flp pilus assembly protein TadC [Micrococcus luteus NCTC 2665]
 gi|239838487|gb|ACS30284.1| Flp pilus assembly protein TadC [Micrococcus luteus NCTC 2665]
          Length = 313

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 58/142 (40%), Gaps = 2/142 (1%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
              L +FP+  ++   SV AG   + A+  I G +   +  EFR  +     G SLS ++
Sbjct: 167 EAILSEFPSVAELFALSVGAGESAAGALERIAGTARGELAGEFRTTLADMRAGASLSAAL 226

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
             M R + L  V  F   + +    G  L++ L   ++ +R+    + ++   +   +  
Sbjct: 227 KAMGRRVQLAPVERFIGGVLIALDRGTPLADVLRAQAQDVRE--MGRRELMEAAGRKEIQ 284

Query: 130 AWIIGSLPFCVSTLVYFTSPGY 151
             +         T+++   PG 
Sbjct: 285 MMVPLVFGILPLTVIFAVFPGI 306


>gi|118443786|ref|YP_877676.1| pilin biogenesis protein [Clostridium novyi NT]
 gi|118134242|gb|ABK61286.1| probable pilin biogenesis protein [Clostridium novyi NT]
          Length = 402

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 47/159 (29%), Gaps = 6/159 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
             D           + AG  + ++V ++  Q+    ++     V E    G +LS  + +
Sbjct: 62  SKDLAVFCRQFATLLDAGADILNSVDLLRKQAENPKLKDSLEVVYEEIQKGYTLSSCMDK 121

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P          +    +  G L   +  ++        + +K++   M       
Sbjct: 122 FKDVYPK-----LLVNMVRSGEETGQLGSVMEKMAEQYEREHRINSKIKGAFMYPIILII 176

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           +  S    + T V  T          +  G   + +  +
Sbjct: 177 VCVSAVTFLLTCVMPTFVQMFEDSGVELPGPTKVVMGIS 215



 Score = 40.5 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/147 (9%), Positives = 43/147 (29%), Gaps = 7/147 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +KK   K +         +  ++ +G+ + +A++++     + +               S
Sbjct: 259 VKKTMRKIVAM--RFSRGLSTTLYSGVSMINALSIVAKVIDNKLIEVKIMKARE-----S 311

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           + + I+       + E       ++   +  G L + L   +           +     M
Sbjct: 312 VIKGITLSESLRDITEFPEMLFAMTKIGEESGRLDDILEKTATFYEQEVEESLEKMTSMM 371

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGY 151
           E      +   +   V  +       +
Sbjct: 372 EPILIVVMGILIGAIVVAMAMPMFDMF 398


>gi|332382440|gb|AEE67287.1| hypothetical protein BPTD_1970 [Bordetella pertussis CS]
          Length = 328

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 62/146 (42%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +   I +R      + P  +D++      GL V  ++ V++         +  E +   E
Sbjct: 163 LLRRIARRRECAEAELPLFIDLLRLLQGVGLSVDQSMHVLIQDFRSVMPVLGGELKIAAE 222

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+SR+ +     ++S    +I    + GG + + LA  +  +R+R+ ++ 
Sbjct: 223 QYARGRTREQSLSRLAQGFDNDDLSAICRLIVQVDRHGGAVQDPLARFAERVRERRRLEL 282

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           K +   +  K +  ++ +L   +  +
Sbjct: 283 KARVARLTVKMTGVMVVTLLPALLII 308


>gi|209546474|ref|YP_002278392.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537718|gb|ACI57652.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 314

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 61/146 (41%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS---EFRRVIE 57
           +      +  ++   FP+ +D+++  + AG+ +  A   +  +  D  +        ++ 
Sbjct: 149 IDRRGAAKEREYRRLFPDFMDMLIVCLDAGMSIEAAANRVAREFVDKRQDFGLHLSIMML 208

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G  L E+++ +   + + E    S +     +LG ++++ L    + +RD + ++A
Sbjct: 209 EVRGGRRLREALANLAIRLRIDEARALSVLFRQSEELGTSVTQTLRVYCKEMRDIRIVRA 268

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A ++  K    +   L      +
Sbjct: 269 EEKANALPVKMLLPLGAFLFPVSLII 294


>gi|269469296|gb|EEZ80804.1| type II secretory component PulF [uncultured SUP05 cluster
           bacterium]
          Length = 412

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 53/153 (34%), Gaps = 9/153 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   +RAGLP+ + +++I  Q+ +  ++    ++      G  LS+S  +      
Sbjct: 75  FTKKLETMIRAGLPILETISMIEKQTINPTLKQVITQIHNDVESGTPLSDSFVKHP---- 130

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               +     +    +  G +   L+ L   +   + +++ ++           ++    
Sbjct: 131 -YVFNNVYINLLRAGESSGKVDLFLSKLVIGMEKDEKIRSSIKGALTYPI---VLLVVAI 186

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             +  ++ F  P + ++    P G         
Sbjct: 187 AVIVLMMVFVVPVFQDMFKGVPGGLPATTQIVV 219



 Score = 38.6 bits (88), Expect = 0.47,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 52/159 (32%), Gaps = 16/159 (10%)

Query: 2   KHLIKKRTAKFLDDFPNA--------LDIIVR----SVRAGLPVSDAVAVIVGQSSDPVR 49
            + I++   KF+   P          L  I         AG+PV +A+ +    + + + 
Sbjct: 252 SYKIRRNWHKFILKLPLFGELIQKSALSKIAMIQGNLTAAGVPVMEALDIAATSNDNIII 311

Query: 50  SEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL 109
            E    ++        S     ++            T ++   +  GN+ E   +++R  
Sbjct: 312 KEAMIEVKK----GVFSGEPLSVLFEKEPSIFPATFTAMTSVGEKTGNMEEMFESIARYY 367

Query: 110 RDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
            +  ++        +E     ++  ++ F +  +     
Sbjct: 368 EEEMDITIAQLTSMLEPIMIVFMGVTIGFILVAMYTPMF 406


>gi|254373072|ref|ZP_04988561.1| hypothetical protein FTCG_00647 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570799|gb|EDN36453.1| hypothetical protein FTCG_00647 [Francisella novicida GA99-3549]
          Length = 407

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 50/155 (32%), Gaps = 10/155 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVA--VIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
            D       +    +AG+P+  +    ++  +    ++     + +    G S S+++S 
Sbjct: 67  QDITEMTRQLATMTKAGIPIIKSFEVFIMGIRKHPRLKILAIEIKQAIEGGESFSKALSN 126

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +             +    +  GNL   L  ++      +++K KV+           
Sbjct: 127 FPKI-----FDKLYVGLITAGEESGNLDLMLNKIADQREALQSIKKKVKKALSYPIIVCI 181

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
           I          L+ F  P +  + IN  +    + 
Sbjct: 182 IAAG---VTGILLTFAVPAFSAMFINSGKPLPAIT 213


>gi|218779629|ref|YP_002430947.1| type II secretion system protein [Desulfatibacillum alkenivorans
           AK-01]
 gi|218761013|gb|ACL03479.1| Type II secretion system protein, PilC [Desulfatibacillum
           alkenivorans AK-01]
          Length = 403

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 44/138 (31%), Gaps = 6/138 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                   + AGLP+   + ++   + +   +   R V  +   G +L++++ +      
Sbjct: 68  FARQFSTMIDAGLPLIQCLDILHSQEENKTFKKTLRDVKSSVEGGSTLADALRKYPNQ-- 125

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    ++GG L   L  L+  +     +KA+V+           +   + 
Sbjct: 126 ---FDDLFVNMVAAGEIGGILDTILQRLAAYMEKAAALKARVKGALTYPIIVIIVAAIVV 182

Query: 138 FCVSTLVYFTSPGYMNVL 155
             +   V  T        
Sbjct: 183 GVILVFVIPTFEKMFADF 200



 Score = 41.3 bits (95), Expect = 0.063,   Method: Composition-based stats.
 Identities = 10/130 (7%), Positives = 35/130 (26%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+ + D++ ++   +S     E         +    + +          
Sbjct: 271 FTRTMGTMMSSGVSILDSLDIVAK-TSGNKTVEKAIFSVRAGITEGRTMADPLA----ET 325

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G L   L  ++    +  +         +E    A++   +  
Sbjct: 326 GVFPSMVVQMISVGEQTGALDTMLEKIADFYDNEVDQAVDNLTSMIEPFMMAFLGVVVGG 385

Query: 139 CVSTLVYFTS 148
            V ++     
Sbjct: 386 LVISMYLPVF 395


>gi|16131206|ref|NP_417786.1| general secretory pathway component, cryptic [Escherichia coli str.
           K-12 substr. MG1655]
 gi|89110683|ref|AP_004463.1| general secretory pathway component, cryptic [Escherichia coli str.
           K-12 substr. W3110]
 gi|157162801|ref|YP_001460119.1| general secretion pathway protein F [Escherichia coli HS]
 gi|170018437|ref|YP_001723391.1| general secretion pathway protein F [Escherichia coli ATCC 8739]
 gi|170082846|ref|YP_001732166.1| general secretory pathway component, cryptic [Escherichia coli str.
           K-12 substr. DH10B]
 gi|188492194|ref|ZP_02999464.1| general secretion pathway protein F [Escherichia coli 53638]
 gi|194439988|ref|ZP_03072047.1| general secretion pathway protein F [Escherichia coli 101-1]
 gi|238902418|ref|YP_002928214.1| general secretory pathway component, cryptic [Escherichia coli
           BW2952]
 gi|253771849|ref|YP_003034680.1| general secretion pathway protein F [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038488|ref|ZP_04872544.1| general secretory pathway component [Escherichia sp. 1_1_43]
 gi|254163255|ref|YP_003046363.1| general secretory pathway component, cryptic [Escherichia coli B
           str. REL606]
 gi|256025945|ref|ZP_05439810.1| general secretory pathway component, cryptic [Escherichia sp.
           4_1_40B]
 gi|300903575|ref|ZP_07121497.1| general secretion pathway protein F [Escherichia coli MS 84-1]
 gi|300918300|ref|ZP_07134904.1| general secretion pathway protein F [Escherichia coli MS 115-1]
 gi|300932220|ref|ZP_07147499.1| general secretion pathway protein F [Escherichia coli MS 187-1]
 gi|301021123|ref|ZP_07185163.1| general secretion pathway protein F [Escherichia coli MS 196-1]
 gi|301305536|ref|ZP_07211628.1| general secretion pathway protein F [Escherichia coli MS 124-1]
 gi|301643853|ref|ZP_07243884.1| general secretion pathway protein F [Escherichia coli MS 146-1]
 gi|307140010|ref|ZP_07499366.1| general secretory pathway component, cryptic [Escherichia coli
           H736]
 gi|312972412|ref|ZP_07786586.1| general secretion pathway protein F [Escherichia coli 1827-70]
 gi|331644023|ref|ZP_08345152.1| general secretion pathway protein F [Escherichia coli H736]
 gi|1170055|sp|P41441|GSPF_ECOLI RecName: Full=Putative general secretion pathway protein F;
           AltName: Full=Protein transport protein hofF
 gi|606261|gb|AAA58124.1| ORF_o398 [Escherichia coli str. K-12 substr. MG1655]
 gi|1789724|gb|AAC76352.1| general secretory pathway component, cryptic [Escherichia coli str.
           K-12 substr. MG1655]
 gi|85676714|dbj|BAE77964.1| general secretory pathway component, cryptic [Escherichia coli str.
           K12 substr. W3110]
 gi|157068481|gb|ABV07736.1| general secretion pathway protein F [Escherichia coli HS]
 gi|169753365|gb|ACA76064.1| general secretion pathway protein F [Escherichia coli ATCC 8739]
 gi|169890681|gb|ACB04388.1| general secretory pathway component, cryptic [Escherichia coli str.
           K-12 substr. DH10B]
 gi|188487393|gb|EDU62496.1| general secretion pathway protein F [Escherichia coli 53638]
 gi|194421096|gb|EDX37124.1| general secretion pathway protein F [Escherichia coli 101-1]
 gi|226838994|gb|EEH71017.1| general secretory pathway component [Escherichia sp. 1_1_43]
 gi|238861293|gb|ACR63291.1| general secretory pathway component, cryptic [Escherichia coli
           BW2952]
 gi|242378854|emb|CAQ33646.1| gspF [Escherichia coli BL21(DE3)]
 gi|253322893|gb|ACT27495.1| general secretion pathway protein F [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975156|gb|ACT40827.1| general secretory pathway component, cryptic [Escherichia coli B
           str. REL606]
 gi|253979312|gb|ACT44982.1| general secretory pathway component, cryptic [Escherichia coli
           BL21(DE3)]
 gi|260447654|gb|ACX38076.1| general secretion pathway protein F [Escherichia coli DH1]
 gi|299881653|gb|EFI89864.1| general secretion pathway protein F [Escherichia coli MS 196-1]
 gi|300404448|gb|EFJ87986.1| general secretion pathway protein F [Escherichia coli MS 84-1]
 gi|300414561|gb|EFJ97871.1| general secretion pathway protein F [Escherichia coli MS 115-1]
 gi|300460044|gb|EFK23537.1| general secretion pathway protein F [Escherichia coli MS 187-1]
 gi|300839231|gb|EFK66991.1| general secretion pathway protein F [Escherichia coli MS 124-1]
 gi|301077756|gb|EFK92562.1| general secretion pathway protein F [Escherichia coli MS 146-1]
 gi|310334789|gb|EFQ00994.1| general secretion pathway protein F [Escherichia coli 1827-70]
 gi|315137902|dbj|BAJ45061.1| general secretory pathway component, cryptic [Escherichia coli DH1]
 gi|315255910|gb|EFU35878.1| general secretion pathway protein F [Escherichia coli MS 85-1]
 gi|315618944|gb|EFU99527.1| general secretion pathway protein F [Escherichia coli 3431]
 gi|323939250|gb|EGB35462.1| general secretion pathway protein F [Escherichia coli E482]
 gi|323959522|gb|EGB55175.1| general secretion pathway protein F [Escherichia coli H489]
 gi|323970131|gb|EGB65405.1| general secretion pathway protein F [Escherichia coli TA007]
 gi|331036317|gb|EGI08543.1| general secretion pathway protein F [Escherichia coli H736]
 gi|332345273|gb|AEE58607.1| general secretion pathway protein GspF [Escherichia coli UMNK88]
          Length = 398

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 60/198 (30%), Gaps = 29/198 (14%)

Query: 5   IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62
           +K R  +    +       +     A LP+ +++AVI  QSS+  +     +V      G
Sbjct: 49  VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLGDVLNQVRSAILEG 108

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             LS+++                  +    +  G L+  L  L+    +R+ +++K+   
Sbjct: 109 HPLSDALQHFPTL-----FDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQS 163

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP-------------------RGHM 163
            +       +       V  L+    P      ++                      G  
Sbjct: 164 LIYP---CMLTTVAIGVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRTGPT 220

Query: 164 LLGVAAAFMLIGIMVMRL 181
           LL       +   + ++ 
Sbjct: 221 LLATVFIVAVGFWLWLKR 238


>gi|325689286|gb|EGD31292.1| bacterial type II secretion system protein F [Streptococcus
           sanguinis SK115]
          Length = 408

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 51/174 (29%), Gaps = 10/174 (5%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
               L D       +   + +G+P+++AV ++  Q+         +VI       +    
Sbjct: 57  KKIKLKDISLFCKQMSVMLNSGIPLNNAVDILEQQTDAKNLKASLKVISKGLKEGN---- 112

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                              +    +  G L E L  +S           +++   +    
Sbjct: 113 QLSKALIEQNGLFPDLLIRMVQAGEKTGKLDEVLERMSEHYNKELKTSRQIRGAMIYPAV 172

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGIMVM 179
            A++  +       L+Y   P +  +         L   + +AA+  +     +
Sbjct: 173 LAFLAVAATLV---LLYVVIPNFSGIFEQSGVALPLPTRIVLAASNFVQSYWYI 223



 Score = 39.3 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+ +A+      +++ V  +  R+         L +           
Sbjct: 270 FASTLATLTSAGIPLVEAIDSAAATTNNAVVIDKLRIANE-----GLQKGERLTGMLTST 324

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G+L   L   S    +      K     +E      +   +  
Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLNKTSDFYEEELEAAIKQLLSLLEPAMIIIMGVIIGG 384

Query: 139 CVSTLVYFTS 148
            V++++    
Sbjct: 385 IVASVMLPMF 394


>gi|290512495|ref|ZP_06551861.1| general secretion pathway protein F [Klebsiella sp. 1_1_55]
 gi|289774836|gb|EFD82838.1| general secretion pathway protein F [Klebsiella sp. 1_1_55]
          Length = 337

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 40/139 (28%), Gaps = 7/139 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   V AG+P+  A+  +  Q          R +        L             
Sbjct: 2   LTRQLATLVAAGIPLEKALDAVAQQCE----KAPLRTLMAGVRSKVLEGHSLAEAMRGYP 57

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G+L   L  L+     R+ ++A++Q   +       +      
Sbjct: 58  ACFDGLFCAMVAAGETSGHLDGVLNRLADYTEQRQQLRARLQQAMIYPI---VLTLVAIS 114

Query: 139 CVSTLVYFTSPGYMNVLIN 157
            ++ L+    P  +   ++
Sbjct: 115 VIAILLSTVVPKVVEQFVH 133


>gi|148555497|ref|YP_001263079.1| type II secretion system protein [Sphingomonas wittichii RW1]
 gi|148500687|gb|ABQ68941.1| type II secretion system protein [Sphingomonas wittichii RW1]
          Length = 406

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 56/169 (33%), Gaps = 7/169 (4%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R              I   V + + +  A+ ++  Q+         R +     G  L  
Sbjct: 60  RRRVGARALATVTRQIATLVTSEVNIEQALKLVAEQAEG----AALRSLLLDVRGAILDG 115

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
                   +       F T      +  G L++ LA+L+  + +R+  + K+Q   +   
Sbjct: 116 YSFAAALRLHPATFPEFYTASVAAGEQAGRLAQVLAHLADFVENRQRNQQKIQLALLYPA 175

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
             A +   +   ++ L+ +  P  + V I+       L  A   +  G+
Sbjct: 176 LLAVVSFGM---MALLMVYVVPDIVRVFISRGAELPFLTRALIAISGGL 221


>gi|269961262|ref|ZP_06175629.1| type IV pilin biogenesis protein PilC [Vibrio harveyi 1DA3]
 gi|269834023|gb|EEZ88115.1| type IV pilin biogenesis protein PilC [Vibrio harveyi 1DA3]
          Length = 407

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 56/181 (30%), Gaps = 12/181 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       I   +  G+P+  A+ ++        ++S    V      G  +S+++   
Sbjct: 67  KDITVFTRQIATMLMTGVPIVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTA 126

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +            +    +  GNLS+    L+      + ++AKV    +       +
Sbjct: 127 STHFDPLYTD-----LIATGEQSGNLSQVFERLATYREKSEQLRAKVIKALIYPAMVVLV 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM------LIGIMVMRLMINFD 186
              + + + T V             D      + +  +         IG+  + L+I   
Sbjct: 182 ALGVSYLMLTRVIPEFEKMFVGFGADLPAFTQMVLDLSAWTQNWGPFIGLGFLSLLIGSK 241

Query: 187 V 187
           V
Sbjct: 242 V 242



 Score = 38.2 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 14/136 (10%), Positives = 37/136 (27%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72
                    +  S  AG+P+  A+      S +         V      G+ +  ++   
Sbjct: 271 AAIAKFSRTLATSFSAGIPILTALKTTSKTSGNMHYQLAIEEVYRDTAAGMPMYIAMRN- 329

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          + +  +  G L + L  ++ I     +      +  +E     ++
Sbjct: 330 -----CNVFPELVLQMVMIGEESGRLDDMLNKIAAIYEFEVDNTVDNLSKILEPLIIVFL 384

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V+ +     
Sbjct: 385 GVVVGGLVTAMYLPIF 400


>gi|223938628|ref|ZP_03630519.1| type II secretion system protein [bacterium Ellin514]
 gi|223892747|gb|EEF59217.1| type II secretion system protein [bacterium Ellin514]
          Length = 439

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 9/160 (5%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                  +   V AGLP+   + V+   + +  +R     +  +   G + SE +++  +
Sbjct: 92  LTTFTRQLATLVDAGLPLLRGLRVLEKQEKNPTLRGIIGDLGASIEGGSTFSEGLAQHPK 151

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                  +     +    +LGG L   L  L+  +   + +K KV A      A   +  
Sbjct: 152 -----VFNRLYINMVKAGELGGVLEVVLNRLAEFMEKAQKIKGKVIAAMFYPVAVLVVAV 206

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
            +   ++ L+ +  P +  V      G  L       + I
Sbjct: 207 VI---MAILMVYVIPQFETVFAGMLEGAQLPAFTRLVLGI 243



 Score = 42.8 bits (99), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/135 (8%), Positives = 36/135 (26%), Gaps = 5/135 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                   +   V +G+P+  A+ ++   + + + +     +           +     R
Sbjct: 296 AIARFTRTLGTLVSSGVPILQALNIVKETAGNVIVANAVMAVHESVKEGETITAPLEASR 355

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
             P          +    +  G L E L  ++    +  +         +E     ++  
Sbjct: 356 VFPP-----MVISMVDVGEQTGALPEMLLKIADNYDEEVDNAVSAMTSLLEPIMIVFLAV 410

Query: 135 SLPFCVSTLVYFTSP 149
            +   V  +      
Sbjct: 411 VVGSIVIAMFLPLIA 425


>gi|152993257|ref|YP_001358978.1| general secretory pathway protein F [Sulfurovum sp. NBC37-1]
 gi|151425118|dbj|BAF72621.1| general secretory pathway protein F [Sulfurovum sp. NBC37-1]
          Length = 417

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 67/167 (40%), Gaps = 8/167 (4%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           +  I     AG+P++D +  +   + +  ++  + ++    + G S+S+++        +
Sbjct: 79  IRQIAVMTDAGIPITDTLEDVADNTDNQKLKEIYNKMHSDINAGNSMSDAME-----PYI 133

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
            E    +  ++   +  GN+SE+   L++IL   ++   K +        +   +     
Sbjct: 134 DEFGQVALAMTQLGERTGNISESYHKLAKILESIRDNTRKFKKAIRTPMITMAAMAIAFT 193

Query: 139 CVSTLVYFTSPGYMNVLINDP--RGHMLLGVAAAFMLIGIMVMRLMI 183
            +  +V        +    +      +LL +  A    G++++ +++
Sbjct: 194 VLIMVVVPKFKDIFDKFKTELPIPTQILLKLEWALSNYGLLILAILV 240


>gi|213027687|ref|ZP_03342134.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 204

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q          R +      G+  S ++  
Sbjct: 5   EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 64

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P          +    +L G L+E    L+R  + ++ +   V+           
Sbjct: 65  WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPA---I 116

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183
           I+      V  +++F  P +  +  +      LL      +   G     L++
Sbjct: 117 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGPAWGWLIL 169


>gi|329765280|ref|ZP_08256860.1| Flp pilus assembly protein TadC [Candidatus Nitrosoarchaeum limnia
           SFB1]
 gi|329138186|gb|EGG42442.1| Flp pilus assembly protein TadC [Candidatus Nitrosoarchaeum limnia
           SFB1]
          Length = 304

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 75/183 (40%), Gaps = 4/183 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRSEFRRVIETQHL 61
            +K R  K L++ P+ +  +     +GL + +    I  +    D V+         + L
Sbjct: 115 RVKNRATKLLEEIPHFIGYMSTLATSGLSLEEIFKAIAKEETDEDIVKDARFITRNIEIL 174

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ L  ++  ++   P    S       + SQ GG+L E     +++  + K M  +   
Sbjct: 175 GMDLITAVKDLINRTPPGPYSELLEGAIITSQSGGDLKEYFNATAKVQLEEKKMLLQKTT 234

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN--DPRGHMLLGVAAAFMLIGIMVM 179
            S+ + A  + I  + F +  ++  +  G M+  +   D    M +   A   L G++++
Sbjct: 235 ESLGSVAEIYTILLIVFPLLAVIMLSIMGIMSPSLGGFDLLTLMNILTFAVIPLSGVLML 294

Query: 180 RLM 182
            +M
Sbjct: 295 VMM 297


>gi|296101268|ref|YP_003611414.1| protein transport protein HofC [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055727|gb|ADF60465.1| protein transport protein HofC [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 394

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 59/169 (34%), Gaps = 8/169 (4%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                +   ++AGL +S ++ ++  Q        ++ ++E  +  LS   + S  ++  P
Sbjct: 61  EMFRQLATLLQAGLTLSQSLQMLAEQHP---VKHWQALLENMNDDLSEGCAFSEALKRWP 117

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               S     +    +L G L      L++  + ++ + AKV+           +   + 
Sbjct: 118 -AVFSPLYVSMVKTGELTGKLETCCRQLAQQQQSQQQLTAKVKKALRYPTIILALAILVV 176

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML----IGIMVMRLM 182
             + TLV                    + +  +  +    I + V+ L+
Sbjct: 177 LAMVTLVLPEFAAIYKTFNTPLPLLTQMVMGLSAFIQTYSIALFVLLLI 225


>gi|238923484|ref|YP_002937000.1| hypothetical protein EUBREC_1104 [Eubacterium rectale ATCC 33656]
 gi|238875159|gb|ACR74866.1| Hypothetical protein EUBREC_1104 [Eubacterium rectale ATCC 33656]
          Length = 289

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 64/151 (42%), Gaps = 2/151 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            IKKR+ + L DF N +  +     AGL + DA A +    +  +  E +  ++    G+
Sbjct: 139 KIKKRSEELLSDFSNVVSKLALLTNAGLIMRDAWADVAYNGNTTLYKEMQISVDEMKNGV 198

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S +E+I        + E+  F++ I    + G +   AL  L     +  N+K ++    
Sbjct: 199 SETEAIYHFGNRCIIPEIKKFASTIIQGIEKGNSELTAL--LQEQSAETWNLKRQLVKRE 256

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
            E  +S  +I      +  L+    P + N+
Sbjct: 257 GEKASSKLLIPMFLMFMGILIMVIVPIFTNI 287


>gi|307265193|ref|ZP_07546752.1| Type II secretion system F domain protein [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306919815|gb|EFN50030.1| Type II secretion system F domain protein [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 185

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 6/119 (5%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSE 67
               + D           + AG+P+  A+A I  Q  +  ++     V E    G +LS+
Sbjct: 58  KKVKIKDIAVFCRQFATLINAGIPIVTALATIKEQVENKRLKRAISEVYEEVQKGRTLSD 117

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++ +     P+         +    ++ G L + +  ++       ++  KV++     
Sbjct: 118 AMKKYGDVFPM-----LLYNMVEVGEVSGTLDKVMNEMADHYEKENDLNQKVKSALTYP 171


>gi|167626340|ref|YP_001676840.1| type IV pili polytopic inner membrane protein [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|241668773|ref|ZP_04756351.1| type IV pili polytopic inner membrane protein [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254877304|ref|ZP_05250014.1| type IV pili polytopic inner membrane protein [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|167596341|gb|ABZ86339.1| type IV pili polytopic inner membrane protein [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|254843325|gb|EET21739.1| type IV pili polytopic inner membrane protein [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 410

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 51/155 (32%), Gaps = 10/155 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVA--VIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
            D       +    +AG+P+  +    ++  +    ++    ++ +    G S S+++S 
Sbjct: 69  KDITEMTRQLATMTKAGIPIIKSFEVFIMGIRKHPRLKILAIQIKQAIEGGESFSKALSN 128

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +             +    +  GNL   L  ++      +++K KV+           
Sbjct: 129 FPK-----VFDKLYVGLITAGEESGNLDLMLNKIADQREALESIKKKVKKALSYPIVVCV 183

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
           I          L+ F  P +  + IN  +    + 
Sbjct: 184 IAAG---VTGILLTFAVPAFSAMFINSGKPLPAIT 215


>gi|326777722|ref|ZP_08236987.1| Type II secretion system F domain protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|326658055|gb|EGE42901.1| Type II secretion system F domain protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 307

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 59/174 (33%), Gaps = 12/174 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS------------DPVRSEFRRVIETQHLGLSLSESIS 70
           +V  +RAG     A+   + +                +      V+     G  +  ++ 
Sbjct: 129 VVGELRAGREPGQALLAALRERPAGADPSATPTSGGRLGDAEAAVLAAARFGGDVPAALR 188

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +      L+ +S  +    V    G  L+  L  L   LR+ +  + +++A    A ++ 
Sbjct: 189 QAAEAPGLEGLSGMAACWRVAVDGGAGLATGLERLEAALREDRRRREELRAHLAGAWSTV 248

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            ++  LP     L        + VL++ P G   L V       G+     ++ 
Sbjct: 249 VVLALLPCAGLGLGAALGAEPLRVLLHTPGGLTCLAVGVFLEAAGLYWACRIVR 302


>gi|31747577|gb|AAK35047.2|AF330137_1 type II protein secretion LspF [Legionella pneumophila 130b]
 gi|307610064|emb|CBW99601.1| type II secretory pathway protein LspF [Legionella pneumophila
           130b]
          Length = 399

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/172 (11%), Positives = 46/172 (26%), Gaps = 7/172 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +     +      D       +   + AG+PV +++  +  Q+      E    +     
Sbjct: 48  QRAASSKGKVSAADLALLTRQLATLLAAGIPVEESLRGVSEQTEKDKVRELIIGVR---- 103

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
              L                           +  G L   L  L+     ++  + KVQ 
Sbjct: 104 SKVLEGYGLAQAMAQYPNAFPELYRATVGSGEQTGRLDVVLEKLADYTEKQQQTRQKVQQ 163

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             +       +  ++   +  L+ F  P  ++V     +    +      M 
Sbjct: 164 ALIYPLLMIIVSTAI---ICFLLTFVVPKIIDVFTESGQTLPPMTQLLINMS 212


>gi|319791197|ref|YP_004152837.1| type II secretion system f domain [Variovorax paradoxus EPS]
 gi|315593660|gb|ADU34726.1| Type II secretion system F domain [Variovorax paradoxus EPS]
          Length = 296

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 60/136 (44%), Gaps = 1/136 (0%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESIS 70
            L   P  LD+I    +AGL ++ A+A  V +     +  EF R++     G S  ++++
Sbjct: 149 ILRTLPGYLDMITLCCQAGLSLTGAIAQAVQKGPGGALGQEFDRMMREMRTGASRMDALN 208

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            +   +  + +    + ++    LG +L++ L+ +S   R  +   A+  A+    K   
Sbjct: 209 ALADRLDNKHIKSLVSNLTQAESLGASLADTLSAISDQRRTERFQMAEKLAMEAPVKMIG 268

Query: 131 WIIGSLPFCVSTLVYF 146
            ++  +      +++F
Sbjct: 269 PLVIFIFPVTFIIIFF 284


>gi|297572242|ref|YP_003698016.1| hypothetical protein Arch_1715 [Arcanobacterium haemolyticum DSM
           20595]
 gi|296932589|gb|ADH93397.1| hypothetical protein Arch_1715 [Arcanobacterium haemolyticum DSM
           20595]
          Length = 223

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/176 (11%), Positives = 51/176 (28%), Gaps = 3/176 (1%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESI 69
           K   D    +  +   +R+G  V  A    +              + +T      L    
Sbjct: 38  KVSLDIGMLMAEVATRLRSGASVESAWERSLAPLGGIGGRIGADGIPQTLRTIWELGWWE 97

Query: 70  SRMVRYMP--LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
            +  R        +     V  + +  G  +++ L   +  + D     +         +
Sbjct: 98  RKKRRISKGAHAAIPSAFVVCRMSAGTGAPVADVLDTCASGITDAGEAASARDIALAGPQ 157

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            SA+++ +LP              +    +   G  +L +  +    GI  +  ++
Sbjct: 158 TSAFMLAALPGVGIGFGTMLGANPLGFFFSSIIGAGVLILGLSAEFAGIWWVWRLV 213


>gi|158320668|ref|YP_001513175.1| type II secretion system protein [Alkaliphilus oremlandii OhILAs]
 gi|158140867|gb|ABW19179.1| type II secretion system protein [Alkaliphilus oremlandii OhILAs]
          Length = 400

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/140 (8%), Positives = 39/140 (27%), Gaps = 4/140 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            D           + AG+ +   + ++  Q+ +    +    +                 
Sbjct: 61  KDLAVFCRQFYTMLNAGIGIVKCMEILEKQTENKSLIKALETLGENVQKG----FALSES 116

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +        +    ++ GNL   +  ++        ++ K+++  M     + + 
Sbjct: 117 MKKHTKVFPPLLINMVEAGEVSGNLDTIMERMAIHFEKENKLENKIKSAFMYPAVLSVVT 176

Query: 134 GSLPFCVSTLVYFTSPGYMN 153
            ++   +   V  T  G   
Sbjct: 177 VAVVIFMLVGVMPTFVGMFE 196



 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 41/131 (31%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLSESISRMVRYMP 77
               +   + +G+P+  A+ V+     + V  +   V       G+ LS++I        
Sbjct: 269 FTRTLSTLMDSGIPLLQAMDVVSRVVGNTVVLDKLTVASENVRKGIPLSKAI------HD 322

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           ++        +    +  G L + L   +    +      +     ME      +   + 
Sbjct: 323 MKVFPPMVDSMIKIGEESGTLDDILNKTADFYDEEVETALQRMTTLMEPILIVVMALLIG 382

Query: 138 FCVSTLVYFTS 148
           F V  +V    
Sbjct: 383 FIVIAMVLPLF 393


>gi|327325750|gb|EGE67545.1| membrane spanning protein [Propionibacterium acnes HL096PA2]
 gi|328760172|gb|EGF73747.1| membrane spanning protein [Propionibacterium acnes HL099PA1]
          Length = 288

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 61/169 (36%), Gaps = 1/169 (0%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
            ++     +  +   +  G  +  AV +   ++   +     +++      +   E+  R
Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +   E       +++ +      S  L  ++  ++ R  +  +V+A   + + S  
Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            I  +   +   +      ++  L   P G +L+ VA    +I ++ M 
Sbjct: 224 QITLVTIAMFGGLLVIGRSFLAPL-ATPPGQVLVAVAVVMYVIALVQMY 271


>gi|305680235|ref|ZP_07403043.1| type II secretion system F domain protein [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659766|gb|EFM49265.1| type II secretion system F domain protein [Corynebacterium
           matruchotii ATCC 14266]
          Length = 290

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 59/168 (35%), Gaps = 5/168 (2%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
              L +IV  ++AG  +  A+   +   +   +R E          G S        +  
Sbjct: 99  ATMLTLIVGELQAGATMGAALTACLPTLTEPELRREITVAARRCATGGS----AGAELEQ 154

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P+  +S       +    G  L+  L N+   +  +   +++ +A    A A+A ++  
Sbjct: 155 SPILALSLMGHAWRIAETNGMALAGVLDNIRHRIDHQNRHESRTKAALQGANATAIVLAL 214

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           LP     + +         L +   G ++L    +    GI+    +I
Sbjct: 215 LPLLGMVMGHAIGVNVPAFLTSGGVGGLILIAGVSAECAGILWSDHII 262


>gi|90023218|ref|YP_529045.1| TonB-dependent siderophore receptor [Saccharophagus degradans 2-40]
 gi|89952818|gb|ABD82833.1| General secretion pathway protein F [Saccharophagus degradans 2-40]
          Length = 411

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 57/175 (32%), Gaps = 8/175 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72
            D       +   V++GLP+ + +     QS  PV      +V      G+SL ++++ +
Sbjct: 71  RDVSLVTRQLASLVQSGLPLDEVLQSTAKQSRKPVAKSVLLQVRARVLEGISLHQAMAEV 130

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R             +    +  G L   L  L+      +  + K+Q   +       +
Sbjct: 131 PR-----VFDNLYRAMVRAGESSGFLGPVLEQLAEYTERSQETRQKLQMAMVYPVVMLVV 185

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI--GIMVMRLMINF 185
              +   +   V            ++  G   + VA +  ++  GI +   +   
Sbjct: 186 SVCVVTVLMVKVVPQLTQLFERGKHELPGITKVLVATSNFMVDYGIFLFAGVTAI 240



 Score = 35.1 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 40/128 (31%), Gaps = 7/128 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +     +G+P+ +A+ +     S+        +V      G SLS ++ +       +  
Sbjct: 283 LGLLAHSGVPLLEALRIATQVLSNREMKLASEQVCIAVQEGGSLSRALDQA------KVF 336

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 ++   +  G L E L   +R                ++      + G + F V 
Sbjct: 337 PPLLVQMAASGESNGKLDEQLLYAARNQERELEFSINTAMGLLQPAIVLLLAGIVIFIVM 396

Query: 142 TLVYFTSP 149
            ++     
Sbjct: 397 AILLPIFA 404


>gi|254479956|ref|ZP_05093204.1| general secretion pathway protein F [marine gamma proteobacterium
           HTCC2148]
 gi|214039518|gb|EEB80177.1| general secretion pathway protein F [marine gamma proteobacterium
           HTCC2148]
          Length = 406

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 57/175 (32%), Gaps = 14/175 (8%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMV 73
           D       +   V + LP+ +A+     QS          +V      G +L+ +++   
Sbjct: 68  DLAMLTRQLSTLVLSSLPLDEALQAAAQQSRSSRIKGMLLQVRSRVSEGYTLAYAMAEFP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   +     +    +  G+L   L  L+     R+    K++   +       ++
Sbjct: 128 L-----VFNEMYRAMVAAGEHSGHLGPVLEQLADYTEQRQYTSQKLKMAMIYPF---ILV 179

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-----IGIMVMRLMI 183
           G     V  L+ F  P  + +  +  R   LL  A           GI ++  +I
Sbjct: 180 GVAIAVVVALMIFVVPELIGIFAHSSRELPLLTRALIVSSDFFREWGIWLLLGII 234



 Score = 39.3 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 43/131 (32%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET-QHLGLSLSESISRMVRYMP 77
               +   + +G+P+ DA+ +     ++ V  E  + +      G SL+ ++ +  R+ P
Sbjct: 275 FASTLSILMASGVPLLDALRIAGQVLTNLVLREDSKAVAELVQEGSSLNRALQQSGRFPP 334

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         +    +  G L   LA  +        M         E      + G + 
Sbjct: 335 M------MVHMVASGEASGELETMLARSADNQERELEMTLGTMMALFEPLMVVVMGGMVL 388

Query: 138 FCVSTLVYFTS 148
             V  ++    
Sbjct: 389 MIVLAILLPIF 399


>gi|313901182|ref|ZP_07834670.1| type II secretion system protein F domain protein [Clostridium sp.
           HGF2]
 gi|312954140|gb|EFR35820.1| type II secretion system protein F domain protein [Clostridium sp.
           HGF2]
          Length = 398

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/173 (8%), Positives = 60/173 (34%), Gaps = 6/173 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            +  +    +   + +G+ +  A++++V  +S   ++S +  +      G +LS ++   
Sbjct: 58  KELSDFSRQLGAMIGSGVSLIRAMSILVQRESKPKIKSIYTDMYRKLQQGQTLSMAMESE 117

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +  P          +    +  G + +    ++       ++K K++   +       +
Sbjct: 118 GKAFP-----ELMINMYRTGESSGQMEKVAMTMALQYEKDDHIKRKIRNAMIYPIILLCV 172

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              +   V T +  +       +       ++ G++   +     ++  ++  
Sbjct: 173 TVFVIIVVFTWIIPSFSSVFEGMELPLITKIVNGLSQIMIHYWYWLLIGILCI 225


>gi|313824430|gb|EFS62144.1| type II secretion system F domain protein [Propionibacterium acnes
           HL036PA2]
          Length = 147

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 51/140 (36%), Gaps = 4/140 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
              P AL ++  ++ AGLP+  AV  +      P   + RR+  +   G+  S + + + 
Sbjct: 7   AQLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVPDSRAWNDLA 66

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK-ASAWI 132
               ++     +  +S     G  +SE L+  +  L+     K + +A           +
Sbjct: 67  ---SVEVWRDPAQDVSRAVDSGEGISELLSAHAAQLQVAAAEKTEKKARKAGVDAIGPLV 123

Query: 133 IGSLPFCVSTLVYFTSPGYM 152
              LP      V     G +
Sbjct: 124 CCHLPAFSLVGVVPIIAGMV 143


>gi|309776322|ref|ZP_07671310.1| putative bacterial type II secretion system protein F domain
           protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915918|gb|EFP61670.1| putative bacterial type II secretion system protein F domain
           protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 343

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 58/163 (35%), Gaps = 10/163 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            ++  +    +   +  G+ + + + +I   +++P   E         L   L +  S  
Sbjct: 8   SEEMFDFCTQMSMILAGGMSIEEGLEIISEDTANPHMKE-----ACSKLLEKLPQCGSFH 62

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                      ++  +    ++ G+L   +  L+       ++K  ++           +
Sbjct: 63  SALKGEPYFDTYAKKMVEIGEISGHLDSVMKELALYYERNSDLKQSLKEALTYPS---IL 119

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           +  +   V  +V+   P +  VL+N   G  L G AA+ M  G
Sbjct: 120 LLMMWAVVGIIVWKVLPIFEKVLMN--MGVPLQGSAASMMRFG 160


>gi|302864764|ref|YP_003833401.1| Type II secretion system F domain-containing protein
           [Micromonospora aurantiaca ATCC 27029]
 gi|315501058|ref|YP_004079945.1| type ii secretion system f domain protein [Micromonospora sp. L5]
 gi|302567623|gb|ADL43825.1| Type II secretion system F domain [Micromonospora aurantiaca ATCC
           27029]
 gi|315407677|gb|ADU05794.1| Type II secretion system F domain protein [Micromonospora sp. L5]
          Length = 299

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/180 (9%), Positives = 56/180 (31%), Gaps = 3/180 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             ++R    ++        +      G  +  A+   +  + + ++ E R +      G 
Sbjct: 102 RAEQRAIARVEAVGEWTRRLKDISATGQGLQQAIIGTIATAPEEIQEEVRTLAARLQAGW 161

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQS-QLGGNLSEALANLSRILRDRKNMKAKVQAL 122
               ++      +           + +     G  L + L +++         + +V+A 
Sbjct: 162 LARSALLAFADEIADPVADQVVAALILHLTDRGERLGDVLGSIATAASAEVATRREVEAK 221

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
             + + +   +  +           +  Y+        G +++ V  A  +  ++ +R M
Sbjct: 222 RTQPRFAVRFLTGMTLATLAY-GLVNSDYIRP-YGTLTGQLVMAVLGAAFVGLLVWVRSM 279


>gi|262277340|ref|ZP_06055133.1| type II Secretion System PilC [alpha proteobacterium HIMB114]
 gi|262224443|gb|EEY74902.1| type II Secretion System PilC [alpha proteobacterium HIMB114]
          Length = 427

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/155 (12%), Positives = 55/155 (35%), Gaps = 6/155 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72
            +       +   ++AGLP+ +++ +I  Q+           +++  + G++L+++  + 
Sbjct: 84  KELLQFTKKVSTMIKAGLPILESIMMIRDQTVHMKMKMTAHNIVKDLNSGMNLTDAFKKH 143

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +             +    +  G L E L  L  +L   + +K+ +++          +
Sbjct: 144 PKI-----FDNIYINMISAGEASGKLDEFLIKLVELLEKNQKIKSGIKSALFYPIMLLTV 198

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
             ++   +   V          +     G  L+ V
Sbjct: 199 ATTITIFMLWKVVPVFEKMYANMGVKLPGPTLIIV 233


>gi|291612967|ref|YP_003523124.1| general secretion pathway protein F [Sideroxydans lithotrophicus
           ES-1]
 gi|291583079|gb|ADE10737.1| general secretion pathway protein F [Sideroxydans lithotrophicus
           ES-1]
          Length = 407

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/171 (11%), Positives = 48/171 (28%), Gaps = 4/171 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R    L +    L      + AGLP+  A+AV++ Q  +P   +    +        L+ 
Sbjct: 62  RKRISLSEVSLMLRQFATLLEAGLPLEQALAVLIEQGDNPAMRQVLATMR----SEVLAG 117

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +                   +    +  G L+  +  L+     ++ ++ K+    +   
Sbjct: 118 NTLARAMEKHRDTFPEIHRALINAGEESGELATVMDRLATYSEGQQALQQKIGLAMIYPA 177

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
               +   +   +   V                      +  + +L    +
Sbjct: 178 IVVTVAVLVVGGLLIFVVPPVVEVFQQTHQALPFLTRALIGLSDLLSATWL 228


>gi|188586347|ref|YP_001917892.1| type II secretion system protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351034|gb|ACB85304.1| type II secretion system protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 403

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 59/189 (31%), Gaps = 28/189 (14%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
             +           VR G+PV +++ +   Q  +  +      VI++ + G SL E+ S 
Sbjct: 64  SKELMLFTSQFSTMVRCGIPVIESLDLQTQQLGNKNLTRGLTIVIKSLNSGKSLREAFSD 123

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P        T +    +  G L E L  L+        +  K+++          
Sbjct: 124 ASETFPW-----LITEMVGAGEESGRLDEILDRLALHYEQEYTLSQKLKSAISYPIL--- 175

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL-------------------INDPRGHMLLGVAAAFM 172
           +I      V  L+    P ++N+                           ++  +A   M
Sbjct: 176 LIILAMVVVYILLTVIFPQFINLFEAQGAELPFITRMIFDSGIWMTENFSLIFVLAILLM 235

Query: 173 LIGIMVMRL 181
            + + + R 
Sbjct: 236 FLCVYIFRR 244


>gi|317968405|ref|ZP_07969795.1| type IV pilus assembly protein PilC [Synechococcus sp. CB0205]
          Length = 413

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 51/143 (35%), Gaps = 6/143 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
             + +   V AG+P+  ++ ++  Q      +     V    + G SL  ++    R   
Sbjct: 78  FANKLAALVDAGVPIVRSLDLMARQQRMPLFKRALTAVSTDVNQGGSLGAALRSWPR--- 134

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +  +    + GG L E+L  L+++L     ++ +++       A   I   + 
Sbjct: 135 --VFDKLTIAMVEAGEAGGVLDESLRRLAKLLEGNARLQNQIKGAMGYPVAVLAIAILVF 192

Query: 138 FCVSTLVYFTSPGYMNVLINDPR 160
             ++  +  T  G    L  +  
Sbjct: 193 LGMTIFLIPTFAGIFEDLGAELP 215



 Score = 39.3 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/134 (10%), Positives = 41/134 (30%), Gaps = 7/134 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                    RAG+P+  ++ ++   + +  +        +    G+ LS ++ R      
Sbjct: 282 FCRTFSSLTRAGVPILLSLEIVQETAGNAVIADAIVGSRQDVQEGIPLSVALER------ 335

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +     +  +    +  G +   L+ ++    D      K     +E      + G + 
Sbjct: 336 KKVFPELALSMLAIGEETGQMDAMLSKVADFYEDEVEAAVKALTSMLEPAMIVMVGGIVG 395

Query: 138 FCVSTLVYFTSPGY 151
             +  +       +
Sbjct: 396 SILLAMYLPMFSIF 409


>gi|262192440|ref|ZP_06050592.1| general secretion pathway protein F [Vibrio cholerae CT 5369-93]
 gi|262031704|gb|EEY50290.1| general secretion pathway protein F [Vibrio cholerae CT 5369-93]
          Length = 393

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 62/174 (35%), Gaps = 10/174 (5%)

Query: 3   HLIKKR---TAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIE 57
            L ++R     +   +     L  +     +G+P+   +  ++   +   +    +R+  
Sbjct: 41  MLAEQRSSGVKQLSREVLITTLRELATLRESGMPLDQCINSLLENSADKQMVLVLKRLHS 100

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G SLSE+I+      P      + + +    +  G L  AL ++S  +   + + +
Sbjct: 101 DIESGSSLSEAIAAQPDSFPY-----YVSSMLRLGEASGQLGNALFSISERIEREEKLVS 155

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
           +V++          +  +  F +   V       +   ++      LL ++A  
Sbjct: 156 EVKSALTYPAFLLVVCVATIFFMFLYVIPNFETMVQEGVDAGALGNLLAISAFL 209


>gi|87123331|ref|ZP_01079182.1| pili biogenesis protein [Synechococcus sp. RS9917]
 gi|86169051|gb|EAQ70307.1| pili biogenesis protein [Synechococcus sp. RS9917]
          Length = 418

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 62/177 (35%), Gaps = 19/177 (10%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   V AG+P+  ++ ++  Q      +    ++    + G ++  ++ +  +   
Sbjct: 83  FASKLAALVDAGVPIVRSLDLMARQQRLPMFKRALLQISLEVNQGTAMGAAMRQWPK--- 139

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  S  +    + GG L E+L  L+++L D   ++ +++       A   I   + 
Sbjct: 140 --VFDPLSIAMVEAGEAGGVLDESLKRLAKLLEDNARLQNQIKGALGYPVAVLVIAILVF 197

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGV-------------AAAFMLIGIMVMRL 181
             ++  +  T  G    L  +      L V              A  ML+ + ++  
Sbjct: 198 LGMTIFLIPTFAGIFKDLGAELPLFTQLMVDLSELLRSPLSLLLAGVMLMALWMLSR 254



 Score = 37.0 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/135 (9%), Positives = 38/135 (28%), Gaps = 5/135 (3%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
                I     RAG+P+  ++ +    + + + S+             L          +
Sbjct: 285 AQFCRIFSSLTRAGVPILMSLEISSDTAGNSIISDAILASRGLVQEGVL-----LSAALI 339

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
               +   +  +    +  G + + L+ ++    D      K     +E      + G +
Sbjct: 340 RQNVLPEMALSMLAIGEETGEMDQMLSKVADFYEDEVTASVKALTSMLEPAMIVVVGGIV 399

Query: 137 PFCVSTLVYFTSPGY 151
              +  +       +
Sbjct: 400 GSILLAMYLPMFTVF 414


>gi|171320623|ref|ZP_02909643.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
 gi|171094136|gb|EDT39223.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
          Length = 314

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 3/131 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRM 72
           FP+ALD++V    AG  ++  V  +  +      P+  E     +   L  ++SE+++  
Sbjct: 170 FPDALDLLVICTMAGNSLASGVRRVARELERICPPLADELTVCADELTLSGNVSEALAHF 229

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +        +T ++   + G  +++AL  LSR  R  + +  + +A  +  K +  +
Sbjct: 230 ALRVNFSSARSLATTLTQSQRFGTPITQALRTLSRSERTEQVVALEEKAAKLAPKITVPM 289

Query: 133 IGSLPFCVSTL 143
           +  +   V  +
Sbjct: 290 MLFILPTVGLI 300


>gi|156975735|ref|YP_001446642.1| hypothetical protein VIBHAR_03470 [Vibrio harveyi ATCC BAA-1116]
 gi|156527329|gb|ABU72415.1| hypothetical protein VIBHAR_03470 [Vibrio harveyi ATCC BAA-1116]
          Length = 407

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 53/182 (29%), Gaps = 17/182 (9%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       I   +  G+P+  A+ ++        ++S    V      G  +S+++   
Sbjct: 67  KDITIFTRQIATMLMTGVPIVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTA 126

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +            +    +  GNLS+    L+      + ++AKV    +       +
Sbjct: 127 STHFDPLYTD-----LIATGEQSGNLSQVFERLATYREKSEQLRAKVIKALIYPAMVVLV 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV-----------AAAFMLIGIMVMRL 181
              + + + T V             D      + +                 + +++   
Sbjct: 182 ALGVSYLMLTRVIPEFEKMFTGFGADLPAFTQMVLNLSAWTQNWGPFIGLSFVSLLISGK 241

Query: 182 MI 183
           ++
Sbjct: 242 IM 243



 Score = 37.4 bits (85), Expect = 0.83,   Method: Composition-based stats.
 Identities = 14/136 (10%), Positives = 37/136 (27%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72
                    +  S  AG+P+  A+      S +         V      G+ +  ++   
Sbjct: 271 AAIAKFSRTLATSFSAGIPILTALKTTSKTSGNMHYQLAIEEVYRDTAAGMPMYIAMRN- 329

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          + +  +  G L + L  ++ I     +      +  +E     ++
Sbjct: 330 -----CNVFPELVLQMVMIGEESGRLDDMLNKIAAIYEFEVDNTVDNLSKILEPLIIVFL 384

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V+ +     
Sbjct: 385 GVVVGGLVTAMYLPIF 400


>gi|115351460|ref|YP_773299.1| type II secretion system protein [Burkholderia ambifaria AMMD]
 gi|115281448|gb|ABI86965.1| type II secretion system protein [Burkholderia ambifaria AMMD]
          Length = 337

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 57/147 (38%), Gaps = 5/147 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSES 68
             D+ P  +D++      GL +  ++ V+       +    SE          G +  +S
Sbjct: 185 VTDELPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMMPVLSSEMEIAQRQFAAGRTREQS 244

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           + R+      +++     ++    + GG + E L      LR+ +    + +   +  K 
Sbjct: 245 LQRLSSGFENEDLRAIVRLLIQVDKHGGAVQEPLKQFGERLREARRAMLRERIGRLTVKM 304

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  +I +L   +  L+    PG ++VL
Sbjct: 305 TGVMIVTLLPAL--LIVTAGPGMISVL 329


>gi|294012340|ref|YP_003545800.1| type II secretory pathway component PulF [Sphingobium japonicum
           UT26S]
 gi|292675670|dbj|BAI97188.1| type II secretory pathway component PulF [Sphingobium japonicum
           UT26S]
          Length = 405

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/170 (10%), Positives = 47/170 (27%), Gaps = 5/170 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            +       +   ++   P+ +++  I  QS         R I  +     L        
Sbjct: 66  KELTLFTRQLSTLIQV-SPLEESLRTIGRQSE----QAHVRAIVGKVHSGVLEGRRLADA 120

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +        +    +  G+L   +  LS ++  +  +++KV          A   
Sbjct: 121 LGAEPRSFPPLYRAMISAGESSGSLPTIMERLSDLMERQAVIRSKVLTAIAYPSVLAAFA 180

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             +   +   V        + +         + +  +  L G   +  ++
Sbjct: 181 VCVVAALMIFVVPKVVEQFDTVGQQLPLLTRMVMGISAFLAGYWWLLAIL 230


>gi|289627841|ref|ZP_06460795.1| general secretion pathway protein F [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
          Length = 337

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
               +    +   + AG P+  ++ +++ Q      ++   R+ E    G  LS ++   
Sbjct: 62  AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEE 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    S     +    + GG L   L  LS  L   + ++ +V    +      ++
Sbjct: 122 GTQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +  +   ++ L+ +  P ++ +  +   G  +  +    + +G  +
Sbjct: 174 VIGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGQFL 217


>gi|297193033|ref|ZP_06910431.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197719837|gb|EDY63745.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 262

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 49/150 (32%), Gaps = 4/150 (2%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
             +     P A D++   + AG    +A   +      PV +   R      LG   S +
Sbjct: 114 RKEAARQLPLAADLMAACISAGASPREAAEAVGESLGGPVGAGLARTAAQLRLGAEPSPA 173

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                     + ++     +      G   ++ ++ L+  LR  +      +    +   
Sbjct: 174 WGCFGEIPGAEPLARC---LERADSAGAPAADPVSRLAGRLRAERARAVAGRGRRAQVLI 230

Query: 129 SAWI-IGSLPFCVSTLVYFTSPGYMNVLIN 157
           +A + +  LP  ++  V     G    L++
Sbjct: 231 TAPVGLCFLPAFLAVGVAPVVIGLAGGLLH 260


>gi|323964799|gb|EGB60266.1| type II secretion system protein F [Escherichia coli M863]
 gi|327255083|gb|EGE66686.1| bacterial type II secretion system protein F domain protein
           [Escherichia coli STEC_7v]
          Length = 400

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 52/154 (33%), Gaps = 9/154 (5%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          I+  
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLADKVKSALRYPI---IILAM 172

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
               V  +++F  P +  +          L    
Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGI 206


>gi|20091916|ref|NP_617991.1| hypothetical protein MA3098 [Methanosarcina acetivorans C2A]
 gi|19917114|gb|AAM06471.1| hypothetical protein (multi-domain) [Methanosarcina acetivorans
           C2A]
          Length = 453

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 65/168 (38%), Gaps = 5/168 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           + K++  K    F + L  +   +R G+     V  +       ++ E +       LG 
Sbjct: 136 MQKRKLRKQEVAFSDFLYKLSELMRGGIDPVKGVIALSRGELGAIKKEVQDCASFLVLGH 195

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           SL  S++R+   +  + V+ +  +I   +  GGN+++ +   S  +R   +++ + +   
Sbjct: 196 SLEYSMNRLNEAIGSKLVAKYINIIVEAAHTGGNVADLVFRTSEDMRAVISLEREKENNL 255

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
                   ++  L   +  ++ +     +  LI    G  +LG     
Sbjct: 256 ----KQYAVVFYLAQGIMVMLVYILSTSLLPLIQ-GTGMAMLGGQGVS 298


>gi|313837838|gb|EFS75552.1| type II secretion system F domain protein [Propionibacterium acnes
           HL037PA2]
          Length = 283

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/169 (11%), Positives = 60/169 (35%), Gaps = 1/169 (0%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
            ++     +  +   +  G  +  AV +   ++   +     +++      +   E+  R
Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGAVDQLVSRLDGRMEPREAFQR 163

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +   E       +++ +      S  L  ++  ++ R  +  +V+A   + + +  
Sbjct: 164 MADELDSSEADAVLASLALAATHPRGASVTLKAIAGTIQQRLKVLRQVEAERSKPRNAVR 223

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            I  +   +  ++      ++  L   P G +L+  A    +  ++ M 
Sbjct: 224 QITLVTIAMFGVLLVVGRSFLAPL-ATPPGQVLVTAAVVMYVTALVQMY 271


>gi|297538473|ref|YP_003674242.1| Type II secretion system F domain-containing protein [Methylotenera
           sp. 301]
 gi|297257820|gb|ADI29665.1| Type II secretion system F domain protein [Methylotenera sp. 301]
          Length = 408

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 53/160 (33%), Gaps = 6/160 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               I   ++AG+P+ +A+  +   +++    S    + E+   G  LS ++S+  +   
Sbjct: 71  FSRQIYTLLKAGIPIMNALNGLQASTNNQTFASVIGNIRESLGSGRELSSALSQHPK--- 127

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               S F   +    +  G L      L   L   + M  ++++           +G   
Sbjct: 128 --VFSSFYINMVRVGETTGMLDTVFLRLFDHLEFERFMHDQIKSALRYPTFVVIAMGIAI 185

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
             V+  V             +      + +A +  ++   
Sbjct: 186 VVVNLFVIPAFAKVFQSFGAELPLMTRILLAFSNFMVAAW 225



 Score = 37.4 bits (85), Expect = 0.95,   Method: Composition-based stats.
 Identities = 8/132 (6%), Positives = 45/132 (34%), Gaps = 7/132 (5%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                     + ++G+P++  + ++   + +          + + +   +    S +   
Sbjct: 271 MSRFARSFALASKSGVPITSGLKLVAQTADNDY-----IASKIEQMREGVERGESILRTA 325

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                 +     +    +  G L + +  ++ +   +++++ +++ L  + +    +   
Sbjct: 326 TNSGVFNPIVLQMIAVGEESGALDDLMQEVADMY--QRDVEYEIKTLGAQIEPILIVFLG 383

Query: 136 LPFCVSTLVYFT 147
           +   +  L  F 
Sbjct: 384 VMVLILALGIFL 395


>gi|262374059|ref|ZP_06067336.1| general secretion pathway protein F [Acinetobacter junii SH205]
 gi|262311070|gb|EEY92157.1| general secretion pathway protein F [Acinetobacter junii SH205]
          Length = 401

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 60/184 (32%), Gaps = 22/184 (11%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V AG+P+ +A+  +  QS    V++    V      G SL++++ +  
Sbjct: 65  DLALMTRQLSVLVAAGIPLEEALRAVSKQSEKSHVQNLLISVRSKVLEGHSLAQAMQQSG 124

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R                  +  G+L   L  LS    +R  M+ K+Q   +       + 
Sbjct: 125 R------FPELYIATVAAGERSGHLDLILDQLSDYTENRFAMQKKIQGAMIYPIILMLMS 178

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA------------AAFMLIGIMVMRL 181
             +   V  L+ +  P  +            + V                ++IG + + L
Sbjct: 179 FGI---VMGLMTYVVPEIVKTFEQSKEALPWITVLLMKISAFIRQTWIGMLIIGFIALIL 235

Query: 182 MINF 185
              F
Sbjct: 236 FTRF 239



 Score = 38.2 bits (87), Expect = 0.56,   Method: Composition-based stats.
 Identities = 13/129 (10%), Positives = 35/129 (27%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +    R+G+P+ +A+ +    S++ V  +   V   +          +   +    
Sbjct: 271 FASTLSILTRSGVPLVEALRISAEVSNNWVIRDSIEVAMERVTEGG-----NLATQLERC 325

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G L   L   S +               +E     ++   +  
Sbjct: 326 GYFPPMMVQMIRSGEASGELDRMLDRASTMQDREVTTFISTLLALLEPLMLVFMAAIVLV 385

Query: 139 CVSTLVYFT 147
            V  ++   
Sbjct: 386 IVIAVMLPI 394


>gi|328949685|ref|YP_004367020.1| Type II secretion system F domain protein [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450009|gb|AEB10910.1| Type II secretion system F domain protein [Marinithermus
           hydrothermalis DSM 14884]
          Length = 399

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 6/160 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
                       V AG+P++ A+  +  +S    +R   R V E    G SL+++++   
Sbjct: 58  ALALYTSQFATLVAAGVPLTQALVTLAQESPSPALRQATREVRERIEAGESLADAMAHHP 117

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
              P          +    + GG L   LA L+  L   + +  K++   M       ++
Sbjct: 118 EVFPP-----LMRHLIAAGEAGGALEVTLARLAEYLERAEELNQKIRTALMYPGFVLAVV 172

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           G     +  +V        +             +AA+   
Sbjct: 173 GVALAVLLLVVIPVFARLYSSAGAALPWPTQALLAASAFA 212



 Score = 38.6 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 41/129 (31%), Gaps = 6/129 (4%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
                   +GLP++ A+        +  +      V+++   G S S +++R        
Sbjct: 267 RTFATLYASGLPITQALEATRDLAGNAFIAHAVDEVLQSVVRGESFSAALARHPE----- 321

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                 T +S   +  G L   L   +R L    +   K  + S+E   +  +   +   
Sbjct: 322 VFLPVFTRMSAVGEASGGLDAMLDQAARHLEREVDYAVKRLSASIEPILTVLLGVGILLV 381

Query: 140 VSTLVYFTS 148
              L     
Sbjct: 382 ALALYLPLF 390


>gi|223365710|pdb|2VMB|A Chain A, The Three-Dimensional Structure Of The Cytoplasmic Domains
           Of Epsf From The Type 2 Secretion System Of Vibrio
           Cholerae
 gi|223365711|pdb|2VMB|B Chain B, The Three-Dimensional Structure Of The Cytoplasmic Domains
           Of Epsf From The Type 2 Secretion System Of Vibrio
           Cholerae
          Length = 123

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 6/110 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V++G+P+ + +  +  QS    +R+    V      G +LS+S+    
Sbjct: 13  DLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYP 72

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
                         +    +  G+L   L  L+    +R+ M++K+Q  S
Sbjct: 73  -----HVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAS 117


>gi|152967730|ref|YP_001363514.1| type II secretion system protein [Kineococcus radiotolerans
           SRS30216]
 gi|151362247|gb|ABS05250.1| type II secretion system protein [Kineococcus radiotolerans
           SRS30216]
          Length = 295

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 50/136 (36%), Gaps = 1/136 (0%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           +   D P+  +++  SV AG  V  A+  +    S P+ ++ R  +     G  L +++ 
Sbjct: 152 EIAADLPDVAELLALSVGAGENVVAALERVS-AGSGPLCAQLRHSLGRVRTGTPLLDALV 210

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            +     +   +     I+V  + G  L+E L   +   R+ +  +        E +   
Sbjct: 211 DLAGRWGVAPFTRLVDGIAVAVESGSPLAEVLRAQAADAREAERRRLLETGGRREVQMMV 270

Query: 131 WIIGSLPFCVSTLVYF 146
            ++  +         F
Sbjct: 271 PVVFGVLPVTVVFAVF 286


>gi|318042985|ref|ZP_07974941.1| pili biogenesis protein [Synechococcus sp. CB0101]
          Length = 430

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 52/143 (36%), Gaps = 6/143 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
             + +   V AG+P+  ++ ++  Q      +     V    + G SL  ++ R  +   
Sbjct: 95  FANKLAALVDAGVPIVRSLDLMARQQRMPLFKRALTAVSTDVNQGGSLGAALRRWPK--- 151

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +  +    + GG L E+L  L+++L     ++ +++       A   I   + 
Sbjct: 152 --VFDKLTIAMVEAGEAGGVLDESLRRLAKLLEGNAKLQNQIKGAMGYPVAVLVIAVLVF 209

Query: 138 FCVSTLVYFTSPGYMNVLINDPR 160
             ++  +  T  G    L  +  
Sbjct: 210 LGMTIFLIPTFAGIFEDLGAELP 232



 Score = 42.8 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 17/159 (10%), Positives = 45/159 (28%), Gaps = 19/159 (11%)

Query: 6   KKRTAKFLDDFPNA------------LDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEF 52
           ++R    L   P                      RAG+P+  ++ ++   + +  +    
Sbjct: 274 RRRVDGLLLQLPLFGDLIQKTATAKFCRTFSSLTRAGVPILLSLEIVQETAGNAVIADAI 333

Query: 53  RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112
               +    G+ LS ++ R       Q     +  +    +  G +   L+ ++    D 
Sbjct: 334 VGSRQDVQEGIPLSVALGR------KQVFPELALSMLAIGEETGQMDTMLSKVADFYEDE 387

Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
                K     +E      +   +   +  +       +
Sbjct: 388 VEAAVKALTSMLEPAMIVIVGVIVGSILLAMYLPMFSIF 426


>gi|299771749|ref|YP_003733775.1| general secretion pathway protein F [Acinetobacter sp. DR1]
 gi|298701837|gb|ADI92402.1| general secretion pathway protein F [Acinetobacter sp. DR1]
          Length = 401

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 60/179 (33%), Gaps = 13/179 (7%)

Query: 9   TAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66
             KF   D       +   V A +P+ +A+  +  QS    V++    V      G SL+
Sbjct: 58  QKKFSAYDLALMTRQLSVLVAAAIPLEEALRAVSRQSEKPHVQNLLLSVRSRVLEGHSLA 117

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           + + +  R+                 +  G+L   L  LS    +R  M+ KVQ   +  
Sbjct: 118 QGMQQSGRFPD------LYIATVAAGERSGHLDLILDQLSDYTENRFAMQKKVQGAMIYP 171

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA--AFMLIGIMVMRLMI 183
                +   +   V  L+ +  P  +            + VA   A   I    + ++I
Sbjct: 172 IILMLMSFGI---VMGLMTYVVPEIVKTFDQSKDALPWITVALMKASDFIRHAWVFIII 227


>gi|269217518|ref|ZP_06161372.1| type II secretion system protein [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269212453|gb|EEZ78793.1| type II secretion system protein [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 186

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 51/161 (31%), Gaps = 1/161 (0%)

Query: 24  VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSF 83
              +RAG     A      ++          V         +  S  R         V  
Sbjct: 21  ATRMRAGASTEKAWGQTCARAGFEDGDAVDDVGV-PAALRRMWASRGRKSADDVRLGVPP 79

Query: 84  FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143
              V  +    G   ++ L   +  + D     A  +A     KASA ++  LP     L
Sbjct: 80  AVAVCRLTRATGAPAADVLDACAAGITDAAESAAARRAALAGPKASARMLAWLPLLGLFL 139

Query: 144 VYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                   ++ L++   G  LL +  AF  +GI  +R ++ 
Sbjct: 140 GSLMGTDTLDFLLSAGLGRTLLALGLAFEALGIFWVRRLVR 180


>gi|237798377|ref|ZP_04586838.1| type II secretion system protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021229|gb|EGI01286.1| type II secretion system protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 295

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 69/157 (43%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  + K+R  + + +    + ++     +G+ V  A+ V+  +       +  E R V+ 
Sbjct: 134 LAAVAKRRQKQIVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLA 193

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL L E + +M   + + E+S    +++     GG   ++L  L +++ DR+  + 
Sbjct: 194 RVDSGLELGEELRKMAALLDVDELSDTCIILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 253

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +     + AK S  ++  L   +  ++    PG++ +
Sbjct: 254 QEYISKLSAKMSMVMMVFLFPALLIVL--AGPGFIAI 288


>gi|170701756|ref|ZP_02892692.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
 gi|170133339|gb|EDT01731.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
          Length = 337

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 57/147 (38%), Gaps = 5/147 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSES 68
             D+ P  +D++      GL +  ++ V+       +    SE          G +  +S
Sbjct: 185 VTDELPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMMPVLSSEMEIAQRQFAAGRTREQS 244

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           + R+      +++     ++    + GG + E L      LR+ +    + +   +  K 
Sbjct: 245 LQRLSSGFENEDLRAIVRLLIQVDKHGGAVQEPLKQFGERLREARRAMLRERIGRLTVKM 304

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  +I +L   +  L+    PG ++VL
Sbjct: 305 TGVMIVTLLPAL--LIVTAGPGMISVL 329


>gi|300946549|ref|ZP_07160814.1| general secretion pathway protein F [Escherichia coli MS 116-1]
 gi|300954742|ref|ZP_07167175.1| general secretion pathway protein F [Escherichia coli MS 175-1]
 gi|300318293|gb|EFJ68077.1| general secretion pathway protein F [Escherichia coli MS 175-1]
 gi|300453795|gb|EFK17415.1| general secretion pathway protein F [Escherichia coli MS 116-1]
          Length = 398

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 60/198 (30%), Gaps = 29/198 (14%)

Query: 5   IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62
           +K R  +    +       +     A LP+ +++AVI  QSS+  +     +V      G
Sbjct: 49  VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLGDVLNQVRSAILEG 108

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             LS+++                  +    +  G L+  L  L+    +R+ +++K+   
Sbjct: 109 HPLSDALQHFPTL-----FDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQS 163

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP-------------------RGHM 163
            +       +       V  L+    P      ++                      G  
Sbjct: 164 LIYP---CMLTTVAIGVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRIGPT 220

Query: 164 LLGVAAAFMLIGIMVMRL 181
           LL       +   + ++ 
Sbjct: 221 LLATVFIVAVGFWLWLKR 238


>gi|289643197|ref|ZP_06475324.1| Flp pilus assembly protein TadB-like protein [Frankia symbiont of
           Datisca glomerata]
 gi|289506968|gb|EFD27940.1| Flp pilus assembly protein TadB-like protein [Frankia symbiont of
           Datisca glomerata]
          Length = 376

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 36/104 (34%)

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +    V    G  L+     L+ ++R  +    +V       +AS  ++ SLP    
Sbjct: 248 RQLAAAWRVSQHAGIPLAPLANRLAAVVRAERERDGEVATALAGPRASGRLVASLPVAGI 307

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            L        + VL+    G + L V  A  L G+  +  +   
Sbjct: 308 ALGVLLGVSPLTVLLGTRAGGLCLVVGLALDLAGLAWINRLTEV 351


>gi|172060499|ref|YP_001808151.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
 gi|171993016|gb|ACB63935.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
          Length = 330

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 59/149 (39%), Gaps = 5/149 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLS 66
              +D+ P  +D++      GL +  ++ V+       +    SE          G +  
Sbjct: 177 QSVVDELPLFVDMLRLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEVGIAQRQFAAGRTRD 236

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+ R+      +++   + ++    + GG + E L      LR+ +    + +   +  
Sbjct: 237 QSMQRLSSGFDNEDLRAIARLVVQVDKHGGAVQEPLKQFGDRLRETRRAMLRERIGRLTV 296

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           K +  ++ +L   +  L+    PG++ V+
Sbjct: 297 KMTGVMVLTLLPAL--LIVTAGPGFLAVM 323


>gi|254448218|ref|ZP_05061680.1| general secretion pathway protein F [gamma proteobacterium
           HTCC5015]
 gi|198262085|gb|EDY86368.1| general secretion pathway protein F [gamma proteobacterium
           HTCC5015]
          Length = 407

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 59/173 (34%), Gaps = 12/173 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V++G P+  A+  +  Q+  D V+S    +      G SL+++ S   
Sbjct: 68  DLTLVTRQLATLVKSGQPIEKALFSVSQQTEKDHVKSLLVAIRGKVLEGQSLAQAFSAYP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
              P               +  G+L   L  L+     R  M  K+    M       ++
Sbjct: 128 NVFP-----EIYRSTIASGEASGHLDTVLMRLADYAERRHEMSKKLFESLMYPI---VVV 179

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM---LIGIMVMRLMI 183
                 +S L+ +  P   +V  +      LL V    +   + G   + +++
Sbjct: 180 VMSVLILSLLLVWVVPQITSVFASSDAELPLLTVMIIGLSDGVKGYWWLIILL 232


>gi|237807141|ref|YP_002891581.1| general secretion pathway protein F [Tolumonas auensis DSM 9187]
 gi|237499402|gb|ACQ91995.1| general secretion pathway protein F [Tolumonas auensis DSM 9187]
          Length = 406

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/173 (11%), Positives = 47/173 (27%), Gaps = 6/173 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             +       +   V A LP+ +A+  +  Q+           +        L       
Sbjct: 65  TAELALLTRQLATLVAAALPIEEALKAVAQQTE----KARLSTLVAAVRTKVLEGHSLAD 120

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G+L   L  L+     R+ MK K+    +       +
Sbjct: 121 GMSAFPSVFDQLYRAMVAAGEKSGHLEIVLNRLADYTEQRQQMKNKLLQAMIYPIILTLV 180

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML--IGIMVMRLMI 183
             S+   +   V          +  +        + A+ ++   G+  + L+ 
Sbjct: 181 AISVISILLATVVPKVVEQFIHMKQELPFSTRFLMGASDLVRDYGLWFVLLIA 233


>gi|297570198|ref|YP_003691542.1| general secretion pathway protein F [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296926113|gb|ADH86923.1| general secretion pathway protein F [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 404

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 44/159 (27%), Gaps = 4/159 (2%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           D       +   VR+G+ + +A+  +  Q+  P        +        L    +    
Sbjct: 66  DLAVVTRQLATLVRSGIVLEEALGAVAEQAEKPRLKSVLMAVR----SRILEGYAADRAL 121

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
               +             +  G+L   L  L+     R+ ++ KV    +       +  
Sbjct: 122 GEFPRVFPELYRATLAAGEQAGHLDVVLERLADYTEARQQLQQKVFLALLYPVLLTVVAF 181

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           ++   +   V          +        +  +A +  L
Sbjct: 182 AVISALLVYVVPQVVEVFAHIDQTLPALTVGLIAVSDFL 220


>gi|226226497|ref|YP_002760603.1| general secretion pathway protein F [Gemmatimonas aurantiaca T-27]
 gi|226089688|dbj|BAH38133.1| general secretion pathway protein F [Gemmatimonas aurantiaca T-27]
          Length = 434

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 59/175 (33%), Gaps = 12/175 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +     +  +   + AG+P+  A++      +   R+ F R+      G SLS + +   
Sbjct: 99  ETLAALVRSMATLLAAGVPIDRALSHAASSENVHWRAPFVRIRNAVRRGESLSTACAAES 158

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                  +          ++  G+L+ A   L+  L     ++A+V+           + 
Sbjct: 159 A------LPSIMAPTVAAAEATGSLASAFEGLAEYLERGAELRARVRGALTYPTL---LA 209

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGIMVMRLMINF 185
            S    +  +V    P +  +L +          L V  + ++     +  M+  
Sbjct: 210 SSSAIAILVIVLVVVPRFAALLTDTGAPLPTSTKLLVGVSALVGQWWWLLTMVAV 264


>gi|182437112|ref|YP_001824831.1| hypothetical protein SGR_3319 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178465628|dbj|BAG20148.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 307

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 59/174 (33%), Gaps = 12/174 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS------------DPVRSEFRRVIETQHLGLSLSESIS 70
           +V  +RAG     A+   + +                +      V+     G  +  ++ 
Sbjct: 129 VVGELRAGREPGQALLAALRERPAGADPSATPTSGGRLGDAEAAVLAAARFGGDVPAALR 188

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +      L+ +S  +    V    G  L+  L  L   LR+ +  + +++A    A ++ 
Sbjct: 189 QAAEAPGLEGLSGMAACWRVAVDGGAGLATGLERLEAALREDRRRREELRAHLAGAWSTV 248

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            ++  LP     L        + VL++ P G   L V       G+     ++ 
Sbjct: 249 VVLALLPCAGLGLGAALGAEPLRVLLHTPGGLACLAVGVFLEAAGLYWACRIVR 302


>gi|148272103|ref|YP_001221664.1| hypothetical protein CMM_0924 [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830033|emb|CAN00961.1| conserved membrane protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 341

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 57/174 (32%), Gaps = 11/174 (6%)

Query: 21  DIIVRSVRAGLPVSDAVAVIV------GQSSDPVRSEFRRVIETQ-----HLGLSLSESI 69
             +   + AGL +  A + +        +    V +  RRV            +  + + 
Sbjct: 40  RRLAVLLGAGLHLERAWSQLAPPGGRARRGERAVPALVRRVAAGAGSAPLADRVVAAATA 99

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
                    +     +  + V  + G  L+ +L  L+  L D   ++           A+
Sbjct: 100 VEAAGGGTARSWCALAAGLEVADRTGAPLARSLDRLADSLVDIVRVRRDAGTALAGPVAT 159

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           +  +  +P     L        + VL+    G + L V ++ + IG    R ++
Sbjct: 160 SRTVLLMPGAGLLLAAGLGFDPLRVLVTTVPGLVCLVVGSSLVAIGWRWNRRLV 213


>gi|160893699|ref|ZP_02074483.1| hypothetical protein CLOL250_01253 [Clostridium sp. L2-50]
 gi|156864684|gb|EDO58115.1| hypothetical protein CLOL250_01253 [Clostridium sp. L2-50]
          Length = 434

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 55/155 (35%), Gaps = 3/155 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA-VAVIVGQSSDPVRSEFRRVIETQ 59
           +    +KR  + +  +P+ +D++   + AGL V  A + ++    S  +  E    +   
Sbjct: 282 LHKAGQKRNQELMQAYPSFVDLLSLYMGAGLTVKGALLKIVTMTDSRILSEEINYTLNEI 341

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G+  +E   R+   + L       T++S          + L  L+        +K ++
Sbjct: 342 RSGIPETEGYYRLGNRLELPVYLKMMTLLSQNI--RKGTRDILNMLAEEELSALQLKREL 399

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
                E   +  +   +      ++   +P  M  
Sbjct: 400 AKKKGEEAGTRLLFPMILQLGVVMIIVIAPALMGF 434


>gi|314929716|gb|EFS93547.1| type II secretion system F domain protein [Propionibacterium acnes
           HL044PA1]
          Length = 288

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/169 (11%), Positives = 60/169 (35%), Gaps = 1/169 (0%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
            ++     +  +   +  G  +  AV +   ++   +     +++      +   E+  R
Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +   E       +++ +      S  L  ++  ++ R  +  +V+A   + + +  
Sbjct: 164 MADELDSSEADAVLASLALAATHPRGASVTLKAIAGTIQQRLKVLRQVEAERSKPRNAVR 223

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            I  +   +  ++      ++  L   P G +L+  A    +  ++ M 
Sbjct: 224 QITLVTIAMFGVLLVVGRSFLAPL-ATPPGQVLVTAAVVMYVTALVQMY 271


>gi|238758911|ref|ZP_04620083.1| Type II secretion system protein [Yersinia aldovae ATCC 35236]
 gi|238702868|gb|EEP95413.1| Type II secretion system protein [Yersinia aldovae ATCC 35236]
          Length = 386

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 58/161 (36%), Gaps = 9/161 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
           +        +   V A +P+ + + VIV Q+ +  +      V +    G + S+++S+ 
Sbjct: 47  EGLVLITRQMATLVSASMPLDEVMDVIVKQNPNSKLTKVVCEVRKKIIEGYAFSDALSQF 106

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    S     +    +L G+L  AL+ L+  +  ++ ++ KV    +       +
Sbjct: 107 PAI-----FSPIYKSLITAGELSGHLGIALSQLADYIEQKQQLQRKVTQALIYPV---IL 158

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           I        TL+ F  P  +   ++      L       + 
Sbjct: 159 ILMSIIVSITLLAFVVPNIIEQFVSSEEELPLSTRVLILIS 199


>gi|289706419|ref|ZP_06502777.1| type II secretion system F domain protein [Micrococcus luteus SK58]
 gi|289556914|gb|EFD50247.1| type II secretion system F domain protein [Micrococcus luteus SK58]
          Length = 313

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 58/142 (40%), Gaps = 2/142 (1%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
              L +FP+  ++   SV AG   + A+  I G +   +  EFR  +     G SLS ++
Sbjct: 167 EAILSEFPSVAELFALSVGAGESAAGALERIAGTARGELAGEFRVTLADMRAGASLSAAL 226

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
             M R + L  V  F   + +    G  L++ L   ++ +R+    + ++   +   +  
Sbjct: 227 KAMGRRVQLAPVERFIGGVLIALDRGTPLADVLRAQAQDVRE--MGRRELMEAAGRKEIQ 284

Query: 130 AWIIGSLPFCVSTLVYFTSPGY 151
             +         T+++   PG 
Sbjct: 285 MMVPLVFGILPLTVIFAVFPGI 306


>gi|324991930|gb|EGC23853.1| bacterial type II secretion system protein F [Streptococcus
           sanguinis SK405]
          Length = 408

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/174 (11%), Positives = 50/174 (28%), Gaps = 10/174 (5%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
               L D       +   + +G+P+++AV ++  Q++        +++       S    
Sbjct: 57  KKIKLKDISLFCKQMSVMLESGIPLNNAVDILEQQATSKNLKSSLKIVSKSLKEGS---- 112

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                              +    +  G L E L  +S           +++   +    
Sbjct: 113 QLSKAMLDQEGMFPDLLIRMVQAGEKTGKLDEVLEKMSEHYNKELKTSRQIRGAMIYPA- 171

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGIMVM 179
              +       V  L+Y   P +  +         L   + +AA+  +     +
Sbjct: 172 --VLAFLAVGAVLALLYIVIPSFSGIFEQSGMAMPLPTRIVLAASNFVRSYWYI 223



 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+ +A+      +++ V  E  ++         L +           
Sbjct: 270 FASTLAILTSAGIPLVEAIESAAATTNNAVVIEKMKIANE-----GLQKGERLTGMITST 324

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G+L   L   S    +      K     +E      +   +  
Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLVKTSDYYEEELETAIKQLLSLLEPAMIIVMGVIIGG 384

Query: 139 CVSTLVYFTS 148
            V++++    
Sbjct: 385 IVASVMLPMF 394


>gi|307354768|ref|YP_003895819.1| type II secretion system F domain-containing protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307158001|gb|ADN37381.1| Type II secretion system F domain protein [Methanoplanus
           petrolearius DSM 11571]
          Length = 324

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 60/174 (34%), Gaps = 5/174 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++ I  +      + P AL  +     +G    D +  +  ++   +  EF +V+    
Sbjct: 132 LQNQISNKKMDIERNLPYALAFMSILASSGTTPLDILKSVANENYGHISREFSKVLFRVE 191

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           +       +++ +V   P          IS     GG LS  L   S+ L + +    K 
Sbjct: 192 ILGEDAVTAMNALVSNTPSDPFRDICIDISNLIYGGGGLSGYLNAKSKELMNIRRQTDKE 251

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGY----MNVLINDPRGHMLLGVAA 169
              S+      ++ G +      ++     G     +  L  D    +L+ VA 
Sbjct: 252 FVESLGVFGEGYLGGVIMVLTLAILGIVITGALGIQIGPLKTDEMFFVLIYVAV 305


>gi|228968942|ref|ZP_04129890.1| Hypothetical membrane protein [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228790749|gb|EEM38402.1| Hypothetical membrane protein [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 216

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 64/180 (35%), Gaps = 1/180 (0%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HL 61
           +  KK      +     L+ +  +V     ++ A   ++     P++ +  R +      
Sbjct: 23  YKRKKYEEYVENQLMVYLEAVANAVSTHESMTLAFKSVLPLLQSPIKDDVERCLILYTED 82

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S+ ++    V+    +++  F  ++ + S+ G +    L N++   +D+K  +AK+++
Sbjct: 83  GKSIRDAFHSFVQKYNYKDIKLFHDMLDLISKTGKDTDNILLNIAHEFQDKKIYRAKLKS 142

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
                + +      +   +       +     V     +G  +L       +     +  
Sbjct: 143 GMQPQRRTFKQTAIMLASLPIAALAINADDYVVFARTLQGRFILLAIIVVCIFSAFKIEK 202


>gi|78779570|ref|YP_397682.1| Type II secretory pathway component PulF-like [Prochlorococcus
           marinus str. MIT 9312]
 gi|78713069|gb|ABB50246.1| Type II secretory pathway component PulF-like protein
           [Prochlorococcus marinus str. MIT 9312]
          Length = 446

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 56/164 (34%), Gaps = 4/164 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             D       +   ++ GLP+ D++ +I   S +        V +   LG+S   S+S  
Sbjct: 104 TKDLAVTTKQLSSMIKTGLPLLDSLNIISETSENVTIK---YVFKETSLGISKGLSMSEN 160

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           +   P +  +     +    +  G L + L   +++L     +K ++++      A   +
Sbjct: 161 LEKYP-EVFNEMYLALVSAGETAGLLPDTLDREAKLLESLAKIKGQIKSAMAYPIAIFTL 219

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
              +   +   V                    L V A+  LI +
Sbjct: 220 TIVVVIAMLIFVIPIFVDIYEQSNAKLPTITQLLVDASNQLISL 263



 Score = 36.6 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/134 (11%), Positives = 42/134 (31%), Gaps = 7/134 (5%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVR 74
             N    +     AG+P+ +A+++     S+ +       + +    G  + + + +   
Sbjct: 312 LANFSRTLSALNSAGVPILEALSISRKTISNRIFKKIIDNMYKDIQSGNPIYKVLEK--- 368

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                 +    T +    +  G LS+ +  L+    +      K     ME     ++  
Sbjct: 369 ---EMVIPVMFTSMFRIGEETGELSQMINKLADFYEEEVTASVKTLTSIMEPLLIVFVAV 425

Query: 135 SLPFCVSTLVYFTS 148
            +   +  +     
Sbjct: 426 IVAVILIAMYLPMF 439


>gi|206890249|ref|YP_002248063.1| pilin secretion/fimbrial assembly system protein, PilC, putative
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742187|gb|ACI21244.1| pilin secretion/fimbrial assembly system protein, PilC, putative
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 403

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/160 (11%), Positives = 53/160 (33%), Gaps = 6/160 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +       +   ++AG+P++ A+  I    + +  +     +      G+  +E+IS   
Sbjct: 64  NLIEFARNLSIMLKAGIPLTTALTDIAENITRERFKRVISDIKTMVEKGMPFNEAIS--- 120

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
             M  +        +    +  G L ++L  ++   +  ++++A ++   +    +A + 
Sbjct: 121 --MHKEVFPSVVQYLIKIGEETGRLDKSLDEIANYFQRIEDLRAAIKRALIYPIFAAVVS 178

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
                     V       M  +         L +     L
Sbjct: 179 FGAVCFWLIYVLPQIVNAMKGMGIAIPFITQLLIQIGSFL 218


>gi|50083666|ref|YP_045176.1| general secretion pathway protein F [Acinetobacter sp. ADP1]
 gi|49529642|emb|CAG67354.1| general secretion pathway protein F [Acinetobacter sp. ADP1]
          Length = 401

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 61/184 (33%), Gaps = 22/184 (11%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V A +P+ +A+  +  QS    V++    V      G SL++ + +  
Sbjct: 65  DLALMTRQLSVLVAAAIPLEEALRAVAKQSEKAHVQNLLLSVRSKVLEGHSLAQGMQQSG 124

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R+                 +  G+L   L  L+    +R  M+ KVQ   +       + 
Sbjct: 125 RFPD------LYIATIAAGERSGHLDLILDQLADYTENRFAMQKKVQGAMIYPIILMLMS 178

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA------------AFMLIGIMVMRL 181
            ++   V  L+ +  P  +            + VA               M  G++ + L
Sbjct: 179 FAI---VMGLMTYVVPDIVKTFDQSKEALPWITVALMKASDFIRLAWPFLMSFGVIAIIL 235

Query: 182 MINF 185
            I F
Sbjct: 236 FIRF 239


>gi|83943491|ref|ZP_00955950.1| general secretion pathway protein F [Sulfitobacter sp. EE-36]
 gi|83845723|gb|EAP83601.1| general secretion pathway protein F [Sulfitobacter sp. EE-36]
          Length = 405

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 61/194 (31%), Gaps = 28/194 (14%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66
           R              +   + +G+ V  A+  +  Q +   V S    +  +   G S +
Sbjct: 60  RAKISRRALTLLTRQLATLIGSGIGVEQALKTVADQQNKPAVTSLLLNLRASVLDGRSFA 119

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++              F        +  G L + + +LS  +  R   +  VQ   +  
Sbjct: 120 QALGEYPHVFG-----DFYRASVAAGETSGQLGQVMEHLSGFVETRAKNRQTVQLALLYP 174

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL-------------------INDPRGHMLLGV 167
              A +  +    +  L+ F  P  + V                      +  G  +LGV
Sbjct: 175 AILAVVSLA---VIVALLTFVVPDIVRVFTSRGAELPFLTRSLITVSDFINAWGIAMLGV 231

Query: 168 AAAFMLIGIMVMRL 181
            AA +L G  ++R 
Sbjct: 232 LAAVILGGASLLRQ 245


>gi|254369185|ref|ZP_04985197.1| type IV pili polytopic inner membrane protein [Francisella
           tularensis subsp. holarctica FSC022]
 gi|157122135|gb|EDO66275.1| type IV pili polytopic inner membrane protein [Francisella
           tularensis subsp. holarctica FSC022]
          Length = 409

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 49/155 (31%), Gaps = 10/155 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVA--VIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
            D       +    +AG+P+  +    ++  +    ++     + +    G S S+++  
Sbjct: 69  QDITEMTRQLAIMTKAGIPIIKSFEVFIMGIRKHPRLKILAIEIKQAIEGGESFSKALRN 128

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +             +    +  GNL   L  ++      +++K KV+           
Sbjct: 129 FPKI-----FDKLYVGLITAGEESGNLDLMLNKIADQREALQSIKKKVKKALSYPIIVCI 183

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
           I          L+ F  P +  + IN  +    + 
Sbjct: 184 IAAG---VTGILLTFAVPAFSAMFINSGKPLPAIT 215


>gi|270156769|ref|ZP_06185426.1| type II secretory pathway protein LspF [Legionella longbeachae
           D-4968]
 gi|289164782|ref|YP_003454920.1| type II secretory pathway protein LspF [Legionella longbeachae
           NSW150]
 gi|269988794|gb|EEZ95048.1| type II secretory pathway protein LspF [Legionella longbeachae
           D-4968]
 gi|288857955|emb|CBJ11815.1| type II secretory pathway protein LspF [Legionella longbeachae
           NSW150]
          Length = 400

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 46/160 (28%), Gaps = 7/160 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            D       +   + AG+PV +++  +  Q+      E    +        L        
Sbjct: 61  ADLALFTRQLATLLAAGIPVEESLRGVSEQTEKDKVRELIIGVR----SKVLEGYGLAQA 116

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                              +  G L   L  L+    +++  K KVQ   +       + 
Sbjct: 117 MAQYPHAFPELYRATVGSGEQTGRLDVVLEKLADYTENQQQTKQKVQQALIYPIIMIIVS 176

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             +   +S L+ F  P  + V  +  +    + V    + 
Sbjct: 177 IGI---ISFLLSFVVPKIIEVFTSSGQTLPEMTVLLISLS 213


>gi|260718935|ref|YP_003225076.1| type II secretion protein EtpF [Escherichia coli O103:H2 str.
           12009]
 gi|291285876|ref|YP_003502693.1| EtpF [Escherichia coli O55:H7 str. CB9615]
 gi|257762446|dbj|BAI33942.1| type II secretion protein EtpF [Escherichia coli O103:H2 str.
           12009]
 gi|290765749|gb|ADD59709.1| EtpF [Escherichia coli O55:H7 str. CB9615]
          Length = 407

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 47/153 (30%), Gaps = 9/153 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
             +       +   V A LP+ +A+  +  QS     R     V      G SL+ ++  
Sbjct: 66  SAELALLTRQLSTLVAASLPLEEALDALSRQSEKPRQRDLIAAVRARVLEGHSLATAMGM 125

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    +  G L   L+ L+     R+ M+ ++    +       
Sbjct: 126 FP-----GTFERLYCAMVAAGETSGRLDVVLSRLADYTEQRQIMRNRLLQALIYP---CV 177

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
           +       ++ L+    P  +   I+  +   L
Sbjct: 178 LTLVAVGVIAILLTAVVPKVVEQFIHMKQTLPL 210


>gi|238754449|ref|ZP_04615804.1| Type II secretion system protein [Yersinia ruckeri ATCC 29473]
 gi|238707278|gb|EEP99640.1| Type II secretion system protein [Yersinia ruckeri ATCC 29473]
          Length = 339

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 59/170 (34%), Gaps = 8/170 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   ++AGLP+ +++ ++  ++     R   R + E    G  LSE+IS      P
Sbjct: 4   FTRHLATLLQAGLPLMNSLQLLATEADTPMWRCLLREIGENVIHGQPLSEAISIYPSIFP 63

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                   T +   ++L G L +    L+     ++ ++ KV            +   + 
Sbjct: 64  -----TLYTQLIAVAELTGELDKCCIRLAEQQEKQQQLQKKVAKTLRYPAFVCAVALGVS 118

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHM--LLGVAAAFMLIGIMVMRLMINF 185
             +  +V          L     G    LL ++   +  G+  +  +   
Sbjct: 119 IFMLMMVLPQFAQLYQSLNTSLPGLTLGLLYLSGVLVSYGVYFITALTII 168


>gi|325288257|ref|YP_004264438.1| hypothetical protein Sgly_0063 [Syntrophobotulus glycolicus DSM
           8271]
 gi|324963658|gb|ADY54437.1| hypothetical protein Sgly_0063 [Syntrophobotulus glycolicus DSM
           8271]
          Length = 309

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 65/176 (36%), Gaps = 2/176 (1%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSE 67
                 +   AL II  +      +  AV   +   + PV S F+  +    L    ++ 
Sbjct: 128 KRDIAAELETALSIITTAYLRNEDILTAVDENLPYLNPPVLSVFKGFVSRVRLVDPDVTA 187

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++  +   +       +   +        +L   L  +   L D + +  +++ +  E +
Sbjct: 188 ALHDLKDRIDNAVYVEWCDALIACQH-DRSLKTTLTPIVSKLSDMRVVNGELENMVFEPR 246

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
               I+  L      L+YF +  + + L++ P G ++L + AA + +    +  + 
Sbjct: 247 KEFIIMQVLVVGNIPLMYFLNKDWYHTLMHTPLGQIILTICAAVIFVSTAFVIKLT 302


>gi|33600815|ref|NP_888375.1| hypothetical protein BB1830 [Bordetella bronchiseptica RB50]
 gi|33568415|emb|CAE32327.1| putative membrane protein [Bordetella bronchiseptica RB50]
          Length = 328

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 62/146 (42%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +   I +R      + P  +D++      GL V  ++ V++         +  E +   E
Sbjct: 163 LLRRIARRRECAEAELPLFIDLLRLLQGVGLSVDQSMHVLIQDFRSVMPVLGGELKIAAE 222

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+SR+ +     ++S    +I    + GG + + LA  +  +R+R+ ++ 
Sbjct: 223 QYARGRTREQSLSRLAQGFDNDDLSAICRLIVQVDRHGGAVQDPLARFAERVRERRRLEL 282

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           K +   +  K +  ++ +L   +  +
Sbjct: 283 KARVARLTVKMTGVMVVTLLPALLII 308


>gi|167769282|ref|ZP_02441335.1| hypothetical protein ANACOL_00605 [Anaerotruncus colihominis DSM
           17241]
 gi|167668250|gb|EDS12380.1| hypothetical protein ANACOL_00605 [Anaerotruncus colihominis DSM
           17241]
          Length = 309

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 63/184 (34%), Gaps = 2/184 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++            +   AL II  +      +  AV   +   + PVRS F   +    
Sbjct: 120 IRLTANHYKKNIAAELETALSIITTAYLRNEDIQTAVEENIDYLNPPVRSVFVEFLTRIK 179

Query: 61  L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           L    +  ++  M   +       +   +         L   L  +   L D + +  ++
Sbjct: 180 LVDPDVDAALQDMGTKIDNAVFREWVAALLTCRH-DRGLKTILTPIVAKLSDMRIVNGEL 238

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           + L  E +     +  L      L+Y+ +  + +VL++ P G  LL   AA M I    +
Sbjct: 239 ENLVFEPRKEFITMQVLVIGNIPLLYWLNQDWYDVLMHTPLGQALLAAIAAVMFISTAAV 298

Query: 180 RLMI 183
             + 
Sbjct: 299 IKLT 302


>gi|330940252|gb|EGH43384.1| type II secretion system protein [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 242

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
               +    +   + AG P+  ++ +++ Q      ++   R+ E    G  LS ++   
Sbjct: 4   AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEE 63

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    S     +    + GG L   L  LS  L   + ++ +V    +      ++
Sbjct: 64  GSQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 115

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +  +   ++ L+ +  P ++ +  +   G  +  +    + +G  +
Sbjct: 116 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGEFL 159


>gi|323975731|gb|EGB70827.1| type II secretion system protein F [Escherichia coli TW10509]
          Length = 400

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 53/154 (34%), Gaps = 9/154 (5%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLALDLEQGVAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          I+  
Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLADKVKSALRYPI---IILAM 172

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
               V  +++F  P +  +         +L    
Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPVLTQGI 206


>gi|238755456|ref|ZP_04616796.1| hypothetical protein yruck0001_3330 [Yersinia ruckeri ATCC 29473]
 gi|238706297|gb|EEP98674.1| hypothetical protein yruck0001_3330 [Yersinia ruckeri ATCC 29473]
          Length = 268

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 53/147 (36%), Gaps = 4/147 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--TQHLGLSLSESIS 70
            +  P  +D++   ++AG+ +  A+           R       +   +   + L +SI 
Sbjct: 121 TEAIPLFIDMVAACIQAGMTIESALTHTAKNFESINRDLSMLFNKIMKKSEIIGLEKSIK 180

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            +    P  E+  F + +      G  + E L  LS  ++  + + A+     +  K + 
Sbjct: 181 EVSIVAPSTEIKMFCSTLQYSLSFGSTVYEQLNTLSAEIKKMQLLIAEEILSKLSTKLTL 240

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLIN 157
            +   +      L+   SP  +  + +
Sbjct: 241 PLFLFMVIPFIVLI--LSPSILGFIYH 265


>gi|163802897|ref|ZP_02196785.1| MSHA biogenesis protein MshG [Vibrio sp. AND4]
 gi|159173304|gb|EDP58130.1| MSHA biogenesis protein MshG [Vibrio sp. AND4]
          Length = 407

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 52/168 (30%), Gaps = 8/168 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +    +AG+P+  ++  ++    +    E    V+     G  LS +         
Sbjct: 71  FSRQLFSLTKAGVPLLRSIRGLLQNCENKQLKEALEEVVAELSNGRGLSSA-----MQPH 125

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +  S     +    +  G L EAL  L+         + +++A           I    
Sbjct: 126 TKVFSPLFVSMINVGENTGRLDEALLQLANYYEQELETRKRIKAAMRYPTFVIVFITIAM 185

Query: 138 FCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVMRLMI 183
           F ++ +V             +      +LL  +  F+     ++  +I
Sbjct: 186 FILNIMVIPEFASMFTRFGVELPLPTRVLLTTSDFFVDYWGWLIAGII 233



 Score = 37.4 bits (85), Expect = 0.98,   Method: Composition-based stats.
 Identities = 11/135 (8%), Positives = 37/135 (27%), Gaps = 5/135 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                         +++G+P++ ++A+      +              +  ++    +  
Sbjct: 268 RAQLSRFARTFSLMLQSGVPLNQSLALSGEALGNRFLE-----NRILEMKSAIEAGSTVS 322

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           V  +  +  +     +    +  G + E L  +S       +   K     +E      +
Sbjct: 323 VTAINSKVFTPLVIQMIAVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPLLLVIV 382

Query: 133 IGSLPFCVSTLVYFT 147
            G +      +    
Sbjct: 383 AGMVMVLALGIFLPM 397


>gi|262280791|ref|ZP_06058574.1| general secretion pathway protein F [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257691|gb|EEY76426.1| general secretion pathway protein F [Acinetobacter calcoaceticus
           RUH2202]
          Length = 401

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 62/179 (34%), Gaps = 13/179 (7%)

Query: 9   TAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66
             KF   D       +   V A +P+ +A+  +  QS    V++    V      G SL+
Sbjct: 58  QKKFSAYDLALMTRQLSVLVAAAIPLEEALRAVSKQSEKAHVQNLLSSVRSRVMEGHSLA 117

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           + + +  R+                 +  G+L   L  LS    +R  M+ KVQ   +  
Sbjct: 118 QGMQQSGRFPD------LYIATVAAGERSGHLDLILDQLSDYTENRFAMQKKVQGAMIYP 171

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA--AFMLIGIMVMRLMI 183
                +  ++   V  L+ F  P  +     +      + VA   A   I    + ++I
Sbjct: 172 IILMLMSFAI---VMGLMTFVVPEIVKTFDQNKDALPWITVALMKASDFIRHAWVFIII 227


>gi|54294249|ref|YP_126664.1| type II secretory pathway protein LspF [Legionella pneumophila str.
           Lens]
 gi|53754081|emb|CAH15554.1| type II secretory pathway protein LspF [Legionella pneumophila str.
           Lens]
          Length = 399

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/172 (12%), Positives = 47/172 (27%), Gaps = 7/172 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +     +      D       +   + AG+PV +++  +  Q+      E    +     
Sbjct: 48  QRAASSKGKVSAADLALLTRQLATLLAAGIPVEESLRGVSEQTEKDKVRELIIGVR---- 103

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
              L                           +  G L   L  L+     ++  + KVQ 
Sbjct: 104 SKVLEGYGLAQAMAQYPNAFPELYRATVGSGEQTGRLDVVLEKLADYTEKQQQTRQKVQQ 163

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             +       +  ++   +S L+ F  P  ++V     +    +      M 
Sbjct: 164 ALIYPLLMIIVSTAI---ISFLLTFVVPKIIDVFTESGQTLPPMTQLLINMS 212


>gi|325686526|gb|EGD28554.1| bacterial type II secretion system protein F [Streptococcus
           sanguinis SK72]
          Length = 408

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/174 (11%), Positives = 50/174 (28%), Gaps = 10/174 (5%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
               L D       +   + +G+P+++AV ++  Q++        +++       S    
Sbjct: 57  KKIKLKDISLFCKQMSVMLESGIPLNNAVDILEQQATSKNLKSSLKIVSKSLKEGS---- 112

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                              +    +  G L E L  +S           +++   +    
Sbjct: 113 QLSKAMLDQEGMFPDLLIRMVQAGEKTGKLDEVLEKMSEHYNKELKTSRQIRGAMIYPA- 171

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGIMVM 179
              +       V  L+Y   P +  +         L   + +AA+  +     +
Sbjct: 172 --VLAFLAVGAVLALLYIVIPSFSGIFEQSGMAMPLPTRIVLAASNFVRSYWYI 223



 Score = 44.7 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+ +A+      +++ V  E  ++         L +           
Sbjct: 270 FASTLAILTSAGIPLVEAIESAAATTNNAVVIEKMKIANE-----GLQKGERLTGMITST 324

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G+L   L   S    +      K     +E      +   +  
Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLVKTSDYYEEELETAIKQLLSLLEPAMIIVMGVIIGG 384

Query: 139 CVSTLVYFTS 148
            V++++    
Sbjct: 385 IVASVMLPMF 394


>gi|297537342|ref|YP_003673111.1| Type II secretion system F domain-containing protein [Methylotenera
           sp. 301]
 gi|297256689|gb|ADI28534.1| Type II secretion system F domain protein [Methylotenera sp. 301]
          Length = 401

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/169 (10%), Positives = 53/169 (31%), Gaps = 6/169 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
             D       I +   AG+P+ + +  +   S+    +     +      G  LS++++ 
Sbjct: 59  NQDLVMFCFQIEQLSSAGVPLLECLTDLRESSNNPYFQKVLGAISAEVEGGKMLSQALAE 118

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                     +     +    +  G L     NL   LR +  + ++ + L       A 
Sbjct: 119 HPN-----VFTEVFVSLVSAGEQTGQLPVVFNNLFNTLRWQDELMSQTKKLLAYPAFVAV 173

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ++      + + +      ++  +  +   +    +A +   +    + 
Sbjct: 174 VVFGAVAFLMSYLVPQMASFLKNMGQELPMNTKFLIALSDAFVNYWWLM 222


>gi|257064723|ref|YP_003144395.1| Flp pilus assembly protein TadC [Slackia heliotrinireducens DSM
           20476]
 gi|256792376|gb|ACV23046.1| Flp pilus assembly protein TadC [Slackia heliotrinireducens DSM
           20476]
          Length = 205

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 54/157 (34%), Gaps = 7/157 (4%)

Query: 4   LIKKRTAK----FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
             K+R  +         P  +D +   ++AGL    A  +   +  D +     +     
Sbjct: 51  RRKRRQREASAAIERHVPEMMDAVALGMKAGLSFDSAFGLYHARFDDELARACAQAHTEW 110

Query: 60  HLG-LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             G +S  ++++ M        +  F++ +S   + G ++   L  LS   +     + +
Sbjct: 111 ESGLVSREQALTDMAERFDSAPLRRFASNVSRNLKFGSSIVRVLGALSAEAQAAYRTRME 170

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            +   +  +        +   +  L+    P  + +L
Sbjct: 171 EKVAKVPVRMLMPTAMLILPAM--LIVVLGPVMLELL 205


>gi|253996562|ref|YP_003048626.1| type II secretion system protein [Methylotenera mobilis JLW8]
 gi|253983241|gb|ACT48099.1| type II secretion system protein [Methylotenera mobilis JLW8]
          Length = 408

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/167 (10%), Positives = 46/167 (27%), Gaps = 6/167 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   ++AG+P+ +A+  +   + +   S     +     G         +      
Sbjct: 71  FSRQMYTLLKAGIPIMNALNGLQASTQNKAFSLVIGNVRESLAGGR----ELSVALAQHP 126

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
              S F   +    +  G L      L   +   + M+ +++A           +     
Sbjct: 127 SVFSSFYVSMVRVGESTGLLDSVFFRLFEHIEFERFMRDQIKAALRYPTFVVIAMAVAIV 186

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHM--LLGVAAAFMLIGIMVMRLMI 183
            V+  V             +       LL  +         ++ L++
Sbjct: 187 VVNLFVIPAFAKVFQSFGVELPLMTRGLLAFSGFMQAFWPYLLALIV 233



 Score = 38.9 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 9/132 (6%), Positives = 45/132 (34%), Gaps = 7/132 (5%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                     S ++G+P+++ + ++   + +              +   +    S +   
Sbjct: 271 MARFARSFALSSKSGVPITNGLKLVAQTADNDYVG-----SRIDQMREGVERGESILRTA 325

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                 +     +    +  G+L + +  ++ +   +++++ +++ L  + +    +   
Sbjct: 326 TNSGVFNPIVLQMIAVGEESGSLDDLMEEIADMY--QRDVEYEIKTLGAQIEPILIVFLG 383

Query: 136 LPFCVSTLVYFT 147
           +   +  L  F 
Sbjct: 384 VMVLILALGIFL 395


>gi|289667056|ref|ZP_06488131.1| fimbrial assembly protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 328

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 54/160 (33%), Gaps = 6/160 (3%)

Query: 27  VRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           +++G+P+  A+ +I  GQ +  +R+   +V      G SL E++S+              
Sbjct: 1   MKSGVPIVGALEIIGSGQKNPRMRNMVGQVRTDIEGGSSLHEAVSKHPVQ-----FDELY 55

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
             +    +  G L   L  ++    + + +K K++           +   +   +   V 
Sbjct: 56  RNLIRAGEGAGVLETVLDTIASYKENIEALKGKIKKALFYPSMVVAVALLVSAILLIFVV 115

Query: 146 FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
                       +      + V  +  ++    + L +  
Sbjct: 116 PQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWLILFVVI 155



 Score = 35.5 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 47/131 (35%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77
                  + +AG+P+ +A++++ G + + V      R+ +   +G  ++ ++ ++  +  
Sbjct: 197 FARTTAVTFKAGVPLVEALSIVAGATGNSVYEKAVLRMRDDVSVGYPVNVAMKQVNLFPH 256

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         ++   +  G L   L  ++       N      +  +E     +I   + 
Sbjct: 257 M------VVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG 310

Query: 138 FCVSTLVYFTS 148
             V  +     
Sbjct: 311 GMVIGMYLPIF 321


>gi|89256187|ref|YP_513549.1| Type IV pili polytopic inner membrane protein [Francisella
           tularensis subsp. holarctica LVS]
 gi|115314660|ref|YP_763383.1| Type IV pili polytopic inner membrane protein [Francisella
           tularensis subsp. holarctica OSU18]
 gi|156502243|ref|YP_001428308.1| Type IV pili polytopic inner membrane protein [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167009778|ref|ZP_02274709.1| type IV pili polytopic inner membrane protein [Francisella
           tularensis subsp. holarctica FSC200]
 gi|254367515|ref|ZP_04983541.1| Type IV pili polytopic inner membrane protein [Francisella
           tularensis subsp. holarctica 257]
 gi|89144018|emb|CAJ79266.1| Type IV pili polytopic inner membrane protein [Francisella
           tularensis subsp. holarctica LVS]
 gi|115129559|gb|ABI82746.1| type IV pilus assembly protein [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253331|gb|EBA52425.1| Type IV pili polytopic inner membrane protein [Francisella
           tularensis subsp. holarctica 257]
 gi|156252846|gb|ABU61352.1| type II secretion system protein F/Type IV pili polytopic inner
           membrane protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 409

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 49/155 (31%), Gaps = 10/155 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVA--VIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
            D       +    +AG+P+  +    ++  +    ++     + +    G S S+++  
Sbjct: 69  QDITEMTRQLAIMTKAGIPIIKSFEVFIMGIRKHPRLKILAIEIKQAIEGGESFSKALRN 128

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +             +    +  GNL   L  ++      +++K KV+           
Sbjct: 129 FPKI-----FDKLYVGLITAGEESGNLDLMLNKIADQREALQSIKKKVKKALSYPIIVCI 183

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
           I          L+ F  P +  + IN  +    + 
Sbjct: 184 IAAG---VTGILLTFAVPAFSAMFINSGKPLPAIT 215


>gi|78777585|ref|YP_393900.1| type II secretion system protein [Sulfurimonas denitrificans DSM
           1251]
 gi|78498125|gb|ABB44665.1| type II secretion system protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 414

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 64/156 (41%), Gaps = 11/156 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQ 59
           + ++ K++  +  D    ++  +     AG+ + D++  I   ++D      F+++ E  
Sbjct: 61  LSNIKKRKIEQ--DSLIASIRQLAVMTNAGISIYDSLNEISKSTTDKTLKLVFKKLSEDI 118

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           + G SLS+            E+      +    +  G + +AL +L+ +L D +    K 
Sbjct: 119 NSGHSLSK-----PMNNFRYELGNLCIAMVQLGEKTGKIDDALFSLANMLEDVRANIIKF 173

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +      K    ++ ++    S L+ +  P + N+ 
Sbjct: 174 KKAMSYPKN---VMIAMAVAFSILISYVVPNFKNMF 206


>gi|182413437|ref|YP_001818503.1| type II secretion system protein [Opitutus terrae PB90-1]
 gi|177840651|gb|ACB74903.1| type II secretion system protein [Opitutus terrae PB90-1]
          Length = 417

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 62/184 (33%), Gaps = 9/184 (4%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHL 61
            L ++R        P  L+ +     +G+   +AV ++  +     +R+    + E    
Sbjct: 66  RLERRRNVARAQRLP-FLESLHDLTTSGMSAGEAVRLLSTRIKEPALRALCSALWERLSE 124

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  LS ++S              +  +    +  G+L+E L  L   L +++ ++ ++ A
Sbjct: 125 GAPLSRAMSDFPA-----VFDAATVNLIQAGEATGSLNETLDRLITHLNEQRELRRQLVA 179

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI--GIMVM 179
                     +   +       +       +  L  +      L V  A   +  G+ V 
Sbjct: 180 ALAYPIFMVVVATGVILFFLFFLLPRLQVLLTSLGGELPMSTKLLVGLAQFALHYGLFVA 239

Query: 180 RLMI 183
             ++
Sbjct: 240 LGLV 243


>gi|325294496|ref|YP_004281010.1| type II secretion system F domain [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064944|gb|ADY72951.1| Type II secretion system F domain [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 404

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 46/150 (30%), Gaps = 6/150 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+ +  A+ +I  Q  +  ++     +      G   S ++S+      
Sbjct: 70  FTRQLYAMIHAGISIVTALRIIKEQIQNKSLKKIIEDIASHIEEGGKFSTALSKYKNIFG 129

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +   ++  G L E L  L+  L   + ++ K+++          I   + 
Sbjct: 130 -----ELYISMIRAAEESGTLEETLKRLAEYLEKIEKLRGKIKSALFYPAFVLLIATIII 184

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
             +   +  T       L  +        +
Sbjct: 185 GGILIFIIPTFKALYKDLGGELPSLTQFVI 214



 Score = 37.4 bits (85), Expect = 0.82,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 50/138 (36%), Gaps = 7/138 (5%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70
                 +    +   V +GL + +A+++    +++  +R     V      G+S+S ++S
Sbjct: 266 LKASIASFSRTLSSMVSSGLNILNALSISGETTNNEVLRRAINGVRNQVEKGISISVALS 325

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           R       +  S     +    +  GNL E L+ ++    +  +         +E     
Sbjct: 326 R------YKVFSPMLINMVAIGEEAGNLDEMLSKVADFYEEEVDRTVDALTSLIEPIMMV 379

Query: 131 WIIGSLPFCVSTLVYFTS 148
           +I G + F +  +     
Sbjct: 380 FIGGIIGFIIIAMYLPIF 397


>gi|269986709|gb|EEZ92989.1| type II secretion system protein [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 348

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 55/155 (35%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
           AK     P+ L ++  ++RAG+   ++    +      +     +       G + SE++
Sbjct: 100 AKIEKVLPDMLLLMAANLRAGMIPENSFIASMKPEFGKLNYLLNKAAIETQAGKNFSEAL 159

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
             M      +       +IS   + G  L   L NL+  L   ++++  ++A        
Sbjct: 160 LEMNDMTNSEFFKDSVRIISEGIRSGAELHLILENLASNLLRNESIRNDMRAQVKSYSLF 219

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
            +I  +L   +   V     G ++ +     G   
Sbjct: 220 IFIAATLAAPLLYGVSSFLIGILDQVGATTGGSTA 254


>gi|228943036|ref|ZP_04105537.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228955918|ref|ZP_04117855.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228976631|ref|ZP_04137074.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228783100|gb|EEM31236.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228803745|gb|EEM50427.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228816621|gb|EEM62745.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 304

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 65/180 (36%), Gaps = 1/180 (0%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HL 61
           +  KK      +     L+ +  +V     ++ A   ++     P++ +  R +      
Sbjct: 111 YKRKKYEEYVENQLMVYLEAVANAVSTHESMTLAFKSVLPLLQSPIKDDVERCLILYTED 170

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S+ ++    V+    +++  F  ++ + S+ G +  + L N++   +D+K  +AK+++
Sbjct: 171 GKSIRDAFHSFVQKYNYKDIKLFHDMLDLISKTGKDTDDILLNIAHEFQDKKIYRAKLKS 230

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
                + +      +   +       +     V     +G  +L       +     +  
Sbjct: 231 GMQPQRKTFKQTAIMLASLPVAALAINADDYVVFARTLQGRFILLAIIVVCIFSAFKIEK 290


>gi|20807713|ref|NP_622884.1| general secretory pathway protein F [Thermoanaerobacter
           tengcongensis MB4]
 gi|254479121|ref|ZP_05092472.1| Bacterial type II secretion system protein F domain
           [Carboxydibrachium pacificum DSM 12653]
 gi|20516264|gb|AAM24488.1| General secretory pathway protein F [Thermoanaerobacter
           tengcongensis MB4]
 gi|214034935|gb|EEB75658.1| Bacterial type II secretion system protein F domain
           [Carboxydibrachium pacificum DSM 12653]
          Length = 403

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/172 (12%), Positives = 53/172 (30%), Gaps = 8/172 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSL 65
           KR    + D           + AG+P+  ++A +  Q S+  ++     V E    G +L
Sbjct: 58  KRVK--VKDIAVFCRQFATLINAGIPILTSLATVKEQVSNKKLKMALSEVYEEVQKGRTL 115

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S+++ +                +    ++ G L   +  ++       ++  KV++    
Sbjct: 116 SDAMRK-----REDVFPMLLYNMVEAGEVSGTLDRIMNEMADHYEKENDLNQKVKSALTY 170

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
               + +   +   + T V                    + +  A  +    
Sbjct: 171 PAIVSIVAVFVVVFLLTNVLPIFVAMFENAGVTLPLPTRILLLIASSISNYW 222



 Score = 39.3 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77
               +   V AG+P+  A+ V+     + V +E  RR  E    GL LSE + R+  + P
Sbjct: 271 FARTLGTLVGAGIPLVRALEVVEKVVGNTVVAEGIRRAEEDVKKGLPLSEPLRRIGIFPP 330

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         +    +  G L   L   +       +         +E      +   + 
Sbjct: 331 M------VIQMISVGESSGALDTILEKTANFFDREVDTAVSQMTTLLEPIIILMLATVVG 384

Query: 138 FCVSTLVYFTS 148
           F V +++    
Sbjct: 385 FIVVSIIMPLF 395


>gi|302870515|ref|YP_003839152.1| Type II secretion system F domain-containing protein
           [Micromonospora aurantiaca ATCC 27029]
 gi|302573374|gb|ADL49576.1| Type II secretion system F domain [Micromonospora aurantiaca ATCC
           27029]
          Length = 290

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 54/145 (37%), Gaps = 1/145 (0%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGL 63
            ++R  +        LD++V S+  G  +  A+      +         R V   + L +
Sbjct: 140 AQRRRDELRYALSAVLDLVVISLAGGAGLEQALDDACADTHGWAAGRLNRAVATARLLRI 199

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              +++ ++     + E+   +  +S+    G  + ++L   +  LR  +    + +A S
Sbjct: 200 PPWQALGQLGEDTGVVELQELAATMSLAGTEGARIRDSLTIRAATLRAHQAAALEARANS 259

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTS 148
              + S  ++      +  L+Y   
Sbjct: 260 ATERMSMPVMLLAAAYMLFLLYPAV 284


>gi|226951870|ref|ZP_03822334.1| general secretion pathway protein F [Acinetobacter sp. ATCC 27244]
 gi|294649127|ref|ZP_06726569.1| general secretion pathway protein F [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226837410|gb|EEH69793.1| general secretion pathway protein F [Acinetobacter sp. ATCC 27244]
 gi|292825010|gb|EFF83771.1| general secretion pathway protein F [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 401

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 62/184 (33%), Gaps = 22/184 (11%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V AG+P+ +A+  +  QS    V++    V      G SL++ + +  
Sbjct: 65  DLALMTRQLSVLVAAGIPLEEALRAVSKQSEKSHVQNLLISVRSKVLEGHSLAQGMQQSG 124

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R                  +  G+L   L  LS    +R  M+ K+Q   +       + 
Sbjct: 125 R------FPELYIATVAAGERSGHLDLILDQLSDYTENRFAMQKKIQGAMIYPIILMLMS 178

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA------------AFMLIGIMVMRL 181
            ++   V  L+ +  P  +            + VA             A ++IG + + L
Sbjct: 179 FAI---VMGLMTYVVPEIVKTFEQSKEALPWITVALMKASAFIKQTWVAMLIIGFIAVIL 235

Query: 182 MINF 185
              F
Sbjct: 236 FTRF 239



 Score = 37.0 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/129 (10%), Positives = 35/129 (27%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +    R+G+P+ +A+ +    S++ V  +   V   +          +   +    
Sbjct: 271 FASTLSILTRSGVPLVEALRIGAEVSNNWVIRDAITVAMERVTEGG-----NLATQLERC 325

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G L   L   S +               +E     ++   +  
Sbjct: 326 GYFPPMMVQMIRSGEASGELDRMLDRASTMQDREVTTFISTLLALLEPLMLIFMAAIVLV 385

Query: 139 CVSTLVYFT 147
            V  ++   
Sbjct: 386 IVIAVMLPI 394


>gi|70734195|ref|YP_257835.1| type II secretion system protein F subunit [Pseudomonas fluorescens
           Pf-5]
 gi|68348494|gb|AAY96100.1| type II secretion system protein F domain [Pseudomonas fluorescens
           Pf-5]
          Length = 294

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 64/157 (40%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           + +  K+R      +    + ++     +G+ V  A+ V+  ++      +  E R ++ 
Sbjct: 134 LAYAAKRRQKHIALEISTFIPLLRILFESGMAVEQALRVLSSEAQKLLPELTQELRLILA 193

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL L   +++    + + E +    ++      GG   ++L  L ++L DR+  + 
Sbjct: 194 RVDSGLELGHELNQTATLLAVDEFTDTCVILQQLILQGGGAMKSLQALKQLLDDRRLTRL 253

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +     M AK S  ++  L   +  ++    PG+  +
Sbjct: 254 QEYISKMSAKMSVVMMLFLFPALLIVL--AGPGFTAI 288


>gi|239618229|ref|YP_002941551.1| type II secretion system protein [Kosmotoga olearia TBF 19.5.1]
 gi|239507060|gb|ACR80547.1| type II secretion system protein [Kosmotoga olearia TBF 19.5.1]
          Length = 400

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 61/201 (30%), Gaps = 30/201 (14%)

Query: 4   LIKKRTAKFL----DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRSEFRRVIE 57
             +KR          +       +   V +G+ + DA+ V+  Q+  S   R     V+ 
Sbjct: 47  KTRKRKRSLFPIQPKELSLFSRQLATMVSSGVRIRDALQVLSKQTMFSRRFRKILVEVVL 106

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G   S+++ +       +        +    + GG L EAL  ++       +++ 
Sbjct: 107 LIESGEGFSDALEK------TRVFDELFVNLVRAGETGGVLDEALQRVAEFYEGMVDLQN 160

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM-------------- 163
           +V++              +   +S  +              P G M              
Sbjct: 161 QVKSAMSYPLFMMAFAVGIVGVISFFILPNLMSAFGTGFE-PGGVMGFLLWMNSLLTNHG 219

Query: 164 -LLGVAAAFMLIG--IMVMRL 181
            ++ +A     IG  I +M  
Sbjct: 220 VVVAIAVVMFFIGAKIFMMTK 240


>gi|52841593|ref|YP_095392.1| type II secretory pathway protein LspF [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52628704|gb|AAU27445.1| type II protein secretion LspF [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 399

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/188 (11%), Positives = 52/188 (27%), Gaps = 9/188 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +     ++     D       +   + AG+PV +++  +  Q+      E    +     
Sbjct: 48  QRAASSKSKVSAADLALLTRQLATLLAAGIPVEESLRGVSEQTEKDKVRELIIGVR---- 103

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
              L                           +  G L   L  L+     ++  + KVQ 
Sbjct: 104 SKVLEGYGLAQAMAQYPNAFPELYRATVGSGEQTGRLDVVLEKLADYTEKQQQTRQKVQQ 163

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA--FMLIGIMVM 179
             +       +  ++   +S L+ F  P  ++V     +    +          I    +
Sbjct: 164 ALIYPLLMIIVSTAI---ISFLLTFVVPKIIDVFTESGQTLPPMTKLLINLSQFIKSYGL 220

Query: 180 RLMINFDV 187
             ++   V
Sbjct: 221 YSLVTIIV 228


>gi|148263980|ref|YP_001230686.1| type II secretion system protein [Geobacter uraniireducens Rf4]
 gi|146397480|gb|ABQ26113.1| type II secretion system protein [Geobacter uraniireducens Rf4]
          Length = 402

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 58/190 (30%), Gaps = 24/190 (12%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66
           R      D       ++  ++AGLP+  A+  I+ +     +      + E    G +LS
Sbjct: 57  RRKVDNKDLLTFNQELLVLIKAGLPIIQALDTILERVEKGKLGEILSEIREDVKGGAALS 116

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +  +  +  P               +  G+L + +      L+  +  + KV +  +  
Sbjct: 117 VAFEKHPKVFPH-----LYIASIQAGERTGDLPQTIRRYIAFLKKAEGFRKKVLSALVYP 171

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---------------LGVAAAF 171
                +I      V+ L+ +  P +  V  +      +                      
Sbjct: 172 A---IVITVAFVAVTLLLVYVVPTFSQVYADSGSSLPVPTQMLIAFTGILKKFFWAGVGL 228

Query: 172 MLIGIMVMRL 181
            ++ I + R 
Sbjct: 229 FILAIFIFRR 238



 Score = 37.8 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 15/137 (10%), Positives = 45/137 (32%), Gaps = 5/137 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
                 + +  +   + +G+P+ +++ + VG  ++ V              + + E +  
Sbjct: 264 IKYAVSSFMRTLATVLGSGIPIIESLKMSVGTLNNMVLERKLL-----EAVVRVEEGVQL 318

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                  + +   +  +    +  G+L E L ++S    +       V   S+E      
Sbjct: 319 STALEGAKIMPPLALRMLGVGETTGSLEEMLGDISDYFEEEIERHLNVLTTSIEPAIMII 378

Query: 132 IIGSLPFCVSTLVYFTS 148
           +   +   + T+     
Sbjct: 379 MGVVIGVIIVTMYLPIF 395


>gi|257789879|ref|YP_003180485.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|325829721|ref|ZP_08163184.1| type II secretion system protein F domain protein [Eggerthella sp.
           HGA1]
 gi|257473776|gb|ACV54096.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|325488216|gb|EGC90648.1| type II secretion system protein F domain protein [Eggerthella sp.
           HGA1]
          Length = 350

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 54/162 (33%), Gaps = 8/162 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
             + +     AG+ + +AV ++     D   +     V +   +G  L+ ++        
Sbjct: 14  FCESVAVMHSAGIQMDEAVFLLGENMEDAAFKRACDDVYKELIVGKPLALAMDDSG---- 69

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G L   L +L+R   +   + AK++       A   ++ ++ 
Sbjct: 70  --CFPSHVVDMVGAGEHAGRLENVLWSLARYYDEEDRLYAKIKNAIAYPAALLCVMSAIL 127

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
                ++        + L  +       G   A ++IG + +
Sbjct: 128 LFTVIVILPVFVDVYHGLTGNLTAGS-FGYVNASIIIGWIAL 168


>gi|222099572|ref|YP_002534140.1| General secretion pathway protein F [Thermotoga neapolitana DSM
           4359]
 gi|221571962|gb|ACM22774.1| General secretion pathway protein F [Thermotoga neapolitana DSM
           4359]
          Length = 399

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/183 (12%), Positives = 55/183 (30%), Gaps = 22/183 (12%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQHLGLSLSESISRM 72
           +       +   + AG+ + +A+ ++  Q   S   R     +      G +L+++  ++
Sbjct: 61  EIATFCRQLSIMISAGIRIKEALNILARQEVFSKRFRKIILEIAINVETGDTLADAFRKV 120

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    + GG L   L   +      K ++ +V++         + 
Sbjct: 121 G------VFDNVLISMLEAGEEGGVLDRTLRRAADFYESVKRLQDEVKSAMAYPLFVLFF 174

Query: 133 IGSLPFCVSTLV-----------YFTSPGYMNVLINDPR---GHMLLGVAAAFMLIGIMV 178
              +   +S  +              SP   ++L  +           V  A  + G  V
Sbjct: 175 AVVIVLVISFYILPNLVRAFGTSIPLSPTIQSLLKVNEFLSENWPWFSVVMAGAVFGFFV 234

Query: 179 MRL 181
           +  
Sbjct: 235 LMK 237


>gi|172062964|ref|YP_001810615.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
 gi|171995481|gb|ACB66399.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
          Length = 314

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 3/131 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRM 72
           FP+ALD++V    AG  ++  V  +  +      P+  E     +   L  ++SE+++  
Sbjct: 170 FPDALDLLVICTMAGNSLASGVRRVARELERICPPLADELTVCADELTLSGNVSEALAHF 229

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +        +T ++   + G  +++AL  LSR  R  + +  + +A  +  K +  +
Sbjct: 230 ALRVNFSSARSLATTLTQSQRFGTPITQALRTLSRSERTEQVVALEEKAAKLAPKITVPM 289

Query: 133 IGSLPFCVSTL 143
           +  +   V  +
Sbjct: 290 MLFILPTVGLI 300


>gi|320352795|ref|YP_004194134.1| general secretion pathway protein F [Desulfobulbus propionicus DSM
           2032]
 gi|320121297|gb|ADW16843.1| general secretion pathway protein F [Desulfobulbus propionicus DSM
           2032]
          Length = 407

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 64/159 (40%), Gaps = 9/159 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
             +   A   +   + AG+P+  A++ ++ Q+++  +++   ++ +  + G +L+ +++ 
Sbjct: 67  QQEIHIATRQLATLLGAGIPLVPALSGLIEQTTNRSLKTVLAQIKDAVNEGNALTSALAE 126

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             R       S     +    +  G+L   L  L+    ++  ++++V+A  +      +
Sbjct: 127 HPRL-----FSKIYINMVRAGEASGSLDVVLDRLAEFGENQHAIRSRVKAALLYPI---F 178

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           +       +  L+ F  P   +V     +   L  +   
Sbjct: 179 MAVVGVVVLFLLITFIVPSITSVFEGTQQALPLPTLVLI 217



 Score = 37.0 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 40/131 (30%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +   + +G+P+  A+ ++     + V +E      +    G SLS+          
Sbjct: 276 FSRTLASLLLSGVPLITALQIVRNIVDNVVLAEQINEACDELEKGASLSQFFK------G 329

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +        +    +  G L   LA  +         K       +E      +  ++ 
Sbjct: 330 GKWFPPMLVQMMAVGEQSGTLDTMLAKAADSYEKEVEAKILALTSMIEPVMILSMGVAVS 389

Query: 138 FCVSTLVYFTS 148
           F V +++    
Sbjct: 390 FIVVSILLPIF 400


>gi|227872976|ref|ZP_03991275.1| conserved hypothetical protein [Oribacterium sinus F0268]
 gi|227841192|gb|EEJ51523.1| conserved hypothetical protein [Oribacterium sinus F0268]
          Length = 286

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 1/131 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           M+  + KRT     + P  +  +   V +G+ + DA  ++ G+    + +  R   E   
Sbjct: 133 MRQKLVKRTENCETELPEVVSTMAILVNSGMILRDAWNMVGGRGEGDIYALMRDASEDIR 192

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKV 119
            G + SE+I++  R     E+  F++ +     +  G L   LA  S  L + K  +   
Sbjct: 193 NGHADSEAIAKFGRATNSPEIIKFTSALMQSMGKGAGELPLFLARQSSDLWNEKKQRLLQ 252

Query: 120 QALSMEAKASA 130
           +     AK   
Sbjct: 253 KGEQASAKLLM 263


>gi|310778053|ref|YP_003966386.1| Type II secretion system F domain protein [Ilyobacter polytropus
           DSM 2926]
 gi|309747376|gb|ADO82038.1| Type II secretion system F domain protein [Ilyobacter polytropus
           DSM 2926]
          Length = 402

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 63/189 (33%), Gaps = 20/189 (10%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSE 67
               + +       +   + AG+ +  A+ +   Q     +++   + IE    G S S+
Sbjct: 58  KKVKIKEMTQFTTELSTLIEAGISIVSALEIEAKQLKDGVLKTAISKAIEDIKGGESFSD 117

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++S+  +           T +    ++ G L   L +L++ L      ++KV++  +   
Sbjct: 118 ALSKHPK-----VFKKIYTGLVKSGEVSGQLDNILLDLAKYLDVSYKNRSKVKSAIIYP- 171

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA-----------FMLIGI 176
               +          L+    P +++V  N      L                  ML GI
Sbjct: 172 --CVMFIVALAVSVFLLVVVLPSFVSVFENAGVDLPLPTRILLNLSLFMKTKWYLMLGGI 229

Query: 177 MVMRLMINF 185
             +  +I  
Sbjct: 230 AFIIALIRL 238


>gi|32472541|ref|NP_865535.1| type 4 fimbrial assembly protein pilC [Rhodopirellula baltica SH 1]
 gi|32443777|emb|CAD73219.1| type 4 fimbrial assembly protein pilC [Rhodopirellula baltica SH 1]
 gi|327539065|gb|EGF25698.1| type IV pilus biogenesis protein PilC [Rhodopirellula baltica WH47]
          Length = 404

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/195 (12%), Positives = 59/195 (30%), Gaps = 19/195 (9%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +    KKR              +   +R+G+P+  ++ ++  QSS   +      +    
Sbjct: 51  LSIFGKKRKKVKGQIMATFYGQLASLLRSGVPMIRSLTILGEQSSTPVLGEVLAEIRGRV 110

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G  + +++SR          S  +  +      GG L +AL  +      ++++K + 
Sbjct: 111 EDGEPIGDTMSRYP-----GVFSDMAVNMVRAGTEGGFLEDALDRVGVFTELQEDLKGRT 165

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTS-------------PGYMNVLINDPRGHMLLG 166
            +          I   +   +                     P     L++        G
Sbjct: 166 VSAMAYPVFLFTIGSVVISALLVFFVPKFDMLFDRLRQKGEMPAMTEALLSFSNFLQGYG 225

Query: 167 VAAAFMLIGIMVMRL 181
                + +G+++   
Sbjct: 226 WILIVLAVGLIIFFR 240



 Score = 35.5 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/136 (8%), Positives = 36/136 (26%), Gaps = 5/136 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
                     ++   +  G+P+  ++  I   ++            ++++    S +   
Sbjct: 267 MNLSVARFCRVLGTLLANGVPILKSLD-ISRTATGNRLLSQSIADASENIRSGESLAKP- 324

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    +   +L   L  ++  L  R   +  +    +E      
Sbjct: 325 ---LRQSGYFPISVVEMISVGEESNSLDRVLPEIADSLEKRTFRRLDLFVRLLEPIMLLV 381

Query: 132 IIGSLPFCVSTLVYFT 147
           +   +   V  L+   
Sbjct: 382 MAILVLAVVMALLVPV 397


>gi|315637876|ref|ZP_07893066.1| general secretory pathway protein F [Campylobacter upsaliensis
           JV21]
 gi|315482117|gb|EFU72731.1| general secretory pathway protein F [Campylobacter upsaliensis
           JV21]
          Length = 393

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 62/171 (36%), Gaps = 9/171 (5%)

Query: 1   MKHLIKKRTAKFLDDF-PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           +K L K+   K  D             + AGL + +A+ ++   SS  ++   + +    
Sbjct: 41  LKELKKQSRIKISDTLFCAFFKEFALLLNAGLSIKEALNLMSENSSKHLKDAAKELSANL 100

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           + G SLS +   +   + L E+S          +  GNL+   + ++ +       K + 
Sbjct: 101 NSGQSLSVAFGNLALNLNLSELSL-----IKMGEKTGNLAHIFSQIAELRTKLILNKKRF 155

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           +           +  +L      L++F  P ++++  +      L+     
Sbjct: 156 KKAIHYP---CLVFLALFGAFLFLMFFVVPEFLDIFESLGANLPLMTQILL 203



 Score = 37.0 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/130 (10%), Positives = 39/130 (30%), Gaps = 5/130 (3%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               I    +++G  +S A  +      +    E  +      + LSL + +   + +  
Sbjct: 262 YFFMIFSLLLQSGNALSQAFHLASSSVENKFLKEKFK-----QIELSLGQGLELSLAFKK 316

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +   +   G L    A ++    +++    ++    +E   +  +   + 
Sbjct: 317 AGIFDELVISLLHSAMKSGTLDLLSAKIAHFYEEKQEDFIEIFLKFLEPLMTLLVGILVL 376

Query: 138 FCVSTLVYFT 147
           F    +    
Sbjct: 377 FLALGIFLPM 386


>gi|328906785|gb|EGG26556.1| LOW QUALITY PROTEIN: type II secretion system F domain protein
           [Propionibacterium sp. P08]
          Length = 288

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/169 (11%), Positives = 60/169 (35%), Gaps = 1/169 (0%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
            ++     +  +   +  G  +  AV +   ++   +     +++      +   E+  R
Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGAVDQLVSRLDGRMEPREAFQR 163

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +   E       +++ +      S  L  ++  ++ R  +  +V+A   + + +  
Sbjct: 164 MADELDSSEADAVLASLALAATHPRGASVTLKAIAGTIQQRLKVLRQVEAERSKPRNAVR 223

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            I  +   +  ++      ++  L   P G +L+  A    +  ++ M 
Sbjct: 224 QITLVTIAMFGVLLVVGRSFLAPL-ATPPGQVLVTAAVVMYVTALVQMY 271


>gi|320172804|gb|EFW48036.1| Type IV fimbrial assembly protein PilC [Shigella dysenteriae CDC
           74-1112]
          Length = 266

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/182 (11%), Positives = 54/182 (29%), Gaps = 22/182 (12%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S+ +A++  Q          + +      G++ S ++      
Sbjct: 61  AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L E    L+R  + ++ +  KV++          +   
Sbjct: 121 FPP-----LYRAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175

Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V                            +     +L+       +   ++M
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLM 235

Query: 180 RL 181
           R 
Sbjct: 236 RR 237


>gi|54297272|ref|YP_123641.1| type II secretory pathway protein LspF [Legionella pneumophila str.
           Paris]
 gi|53751057|emb|CAH12468.1| type II secretory pathway protein LspF [Legionella pneumophila str.
           Paris]
          Length = 399

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/188 (11%), Positives = 52/188 (27%), Gaps = 9/188 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +     ++     D       +   + AG+PV +++  +  Q+      E    +     
Sbjct: 48  QRAASSKSKVSAADLALLTRQLATLLAAGIPVEESLRGVSEQTEKDKVRELIIGVR---- 103

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
              L                           +  G L   L  L+     ++  + KVQ 
Sbjct: 104 SKVLEGYGLAQAMAQYPNAFPELYRATVGSGEQTGRLDVVLEKLADYTEKQQQTRQKVQQ 163

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA--FMLIGIMVM 179
             +       +  ++   +S L+ F  P  ++V     +    +          I    +
Sbjct: 164 ALIYPLLMIIVSTAI---ISFLLTFVVPKIIDVFTESGQTLPPMTQLLINLSQFIKSYGL 220

Query: 180 RLMINFDV 187
             ++   V
Sbjct: 221 YSLVTIIV 228


>gi|238897818|ref|YP_002923497.1| component in type IV pilin biogenesis, transmembrane protein
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229465575|gb|ACQ67349.1| component in type IV pilin biogenesis, transmembrane protein
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 405

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 58/171 (33%), Gaps = 8/171 (4%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVR 74
             N    +   ++AGLP+ +++ ++    +    R   + + +    G   S++I    +
Sbjct: 61  LINFTRQLATLLQAGLPLVNSLQLLAKDMNIPIWRCILQNISQEVSRGEPFSDAIRHYPK 120

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                  S     +    +L G+L  +   L++    +K ++ KV            +  
Sbjct: 121 I-----FSKLYCELVAIGELTGHLDHSFFLLAQQQEQQKQLQKKVAKALRYPFLVCIVTL 175

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183
            +   +  LV                     LL ++   +  G+ +  ++I
Sbjct: 176 FVSLIMLILVLPEFAKIYASFDATLPWFTRALLFLSNKLINYGLYIASILI 226


>gi|314956949|gb|EFT01079.1| type II secretion system F domain protein [Propionibacterium acnes
           HL027PA1]
          Length = 227

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 61/169 (36%), Gaps = 1/169 (0%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
            ++     +  +   +  G  +  AV +   ++   +     +++      +   E+  R
Sbjct: 43  LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 102

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +   E       +++ +      S  L  ++  ++ R  +  +V+A   + + S  
Sbjct: 103 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 162

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            I  +   +   +      ++  L   P G +L+ VA    +I ++ M 
Sbjct: 163 QITLVTIAMFGGLLVIGRSFLAPL-ATPPGQVLVAVAVVMYVIALVQMY 210


>gi|83591454|ref|YP_425206.1| type II secretion system protein [Rhodospirillum rubrum ATCC 11170]
 gi|83574368|gb|ABC20919.1| type II secretion system protein [Rhodospirillum rubrum ATCC 11170]
          Length = 411

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 65/172 (37%), Gaps = 6/172 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLG 62
           L+ +R A    +       + R++ AG+P+ +A+  I        +R   RRV      G
Sbjct: 60  LVGRRGAIAERELQQLFLHLDRALGAGVPLLEALDDIGEVTGDGRLRMILRRVRGDLSQG 119

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           L+LS+++ R  R +           +    +  G+L  A   L   LR R+++  +++  
Sbjct: 120 LALSDALGRHERALGP-----MVAPVVRAGEESGDLGGAFGPLVAHLRWREDLGRRLRKA 174

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +         I  L   +  +V      ++  L           +  + +++
Sbjct: 175 TRYPLVVLGAIALLFVFLMAVVVPDLASFLGGLGEGLPPQTRALIGLSGLIV 226


>gi|326205013|ref|ZP_08194863.1| Type II secretion system F domain [Clostridium papyrosolvens DSM
           2782]
 gi|325984818|gb|EGD45664.1| Type II secretion system F domain [Clostridium papyrosolvens DSM
           2782]
          Length = 296

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 60/156 (38%), Gaps = 4/156 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIET 58
           + + +KKR  +   +FP+ ++ +   + AGL +S A   I   S        E ++ +  
Sbjct: 137 LTNKVKKRRLEIQLEFPDFINKLTLLLNAGLTMSKAWEKISLDSKKVSAFHKEVKKTVAQ 196

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G+S +E+     + +   E+S   ++I           + +  L     +   ++  
Sbjct: 197 LKTGVSEAEAFGEFAKRLKTPEISRVMSIIIQ--NSKKGGYDLVMTLKLQSNESWEIRKN 254

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
                 E  ++  +   +    + ++   +P  +++
Sbjct: 255 AVRRLGEEASTKLLFPMMIMFFAIIIIVVTPALISM 290


>gi|239943092|ref|ZP_04695029.1| hypothetical protein SrosN15_19016 [Streptomyces roseosporus NRRL
           15998]
 gi|239989550|ref|ZP_04710214.1| hypothetical protein SrosN1_19776 [Streptomyces roseosporus NRRL
           11379]
 gi|291446568|ref|ZP_06585958.1| predicted protein [Streptomyces roseosporus NRRL 15998]
 gi|291349515|gb|EFE76419.1| predicted protein [Streptomyces roseosporus NRRL 15998]
          Length = 322

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 66/200 (33%), Gaps = 17/200 (8%)

Query: 2   KHLIKKRTAKFLDD-----FPNALDIIVRSVRAGLPVSDAV-----AVIVGQSSDPVRSE 51
           +  +++RT     +            +   +RAG     A+       +         + 
Sbjct: 118 RRWLRRRTGAREAERGAIAVAALCGAVAGELRAGREPGQALLAALREGLAEDGPATTTAS 177

Query: 52  FRRV-------IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN 104
             R+       +     G  +  ++ +      +  +S  +    V    G  L+  L  
Sbjct: 178 GSRLGEAEAAVLAAARFGGDVPAALRQAAEGPGMGGLSGMAACWRVAVDGGAGLAAGLER 237

Query: 105 LSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
           L   LR+ +  + +++A    A ++  ++  LP     L        + VL++ P G   
Sbjct: 238 LEAALREDRRRREELRAQLAGAWSTVVVLALLPVAGLGLGAALGAEPLRVLLHTPGGLAC 297

Query: 165 LGVAAAFMLIGIMVMRLMIN 184
           L V +     G+   R ++ 
Sbjct: 298 LAVGSFLEAAGLCWARRIVR 317


>gi|218132581|ref|ZP_03461385.1| hypothetical protein BACPEC_00440 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992307|gb|EEC58310.1| hypothetical protein BACPEC_00440 [Bacteroides pectinophilus ATCC
           43243]
          Length = 444

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 50/166 (30%), Gaps = 13/166 (7%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-----------GQSSDPVRS 50
           +  ++ R  +   D+   +  +     AG+ V  A   I             +    V  
Sbjct: 281 RKAVRLRNKQLQYDYTEIVSKLTLLTGAGMSVRRAWEKIALDYNNKMKDMPKEKYHAVYE 340

Query: 51  EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
           E    +     G+S + + +   R   ++E     T++    + G      L  L +   
Sbjct: 341 EMMTTLRQMQSGMSENIAYAEFGRRCGIKEYRKLGTLLEQNVRKGTRGLSVL--LEQESE 398

Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
           +    +  +     E   +  ++  +      +V    P  M+   
Sbjct: 399 EAFEQRKNLAKQLGEEAGTKLLLPMILMLAVVMVIVMVPAMMSFNF 444


>gi|291541801|emb|CBL14911.1| Bacterial type II secretion system protein F domain [Ruminococcus
           bromii L2-63]
          Length = 291

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 1/148 (0%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K  I KR+ + L DF   +  +     AG+ + +A   +    +  + +E +  +   + 
Sbjct: 139 KKRILKRSDELLHDFSEVVSKLALLTNAGMILREAWQEVAFAGTSTIYTEMQTTVNEMNN 198

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQ 120
           G+S  +++        + E+  F++ I      G + L+  L   S+ +   K    + +
Sbjct: 199 GVSEIDAMFNFGSRCIIPEIKKFTSTIIQGMTKGNSELTAMLQEQSKEVWQLKKQLVRRE 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTS 148
                +K    I       +  ++    
Sbjct: 259 GEKAASKLLIPICVMFVGILIMIIVPIF 286


>gi|266619395|ref|ZP_06112330.1| putative type IV pilus assembly protein PilC [Clostridium hathewayi
           DSM 13479]
 gi|288869071|gb|EFD01370.1| putative type IV pilus assembly protein PilC [Clostridium hathewayi
           DSM 13479]
          Length = 415

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 10/162 (6%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
               +  +   + +G+P++ A+ +I   +S   ++  + ++      G+ LS+++     
Sbjct: 79  LARFMSEMAVMLNSGIPLAQALNLISVRESRKDLKEIYGKLYHMILHGMDLSQAME---- 134

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            M           +    + GG+L++A   ++         + KV    +      ++  
Sbjct: 135 -MQDGVFPPVLIGMVRAGEAGGSLADAFGKMAEYFEKEDETRKKVGTAMIYPA---FLFL 190

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
           ++   V  L     P +   L        +       + IG+
Sbjct: 191 TVAVVVILLFTTVLPSFFE-LFESMEKIPVSTQVLMAVSIGL 231



 Score = 34.3 bits (77), Expect = 8.3,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 43/130 (33%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                      G+P  +A+ +      S  ++    +V+E    G+ LS+S++++    P
Sbjct: 284 FARTFSFLYGGGVPFINALELTADALGSRYMKKRLCQVMEEVKNGMLLSDSLAQIRELCP 343

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               S          +  GNL   L   +     R     K     +E      +   + 
Sbjct: 344 EFIHS------VYIGEESGNLEAMLKRTADSFEIRSETAIKRLLSLLEPTMIIIMAVIIG 397

Query: 138 FCVSTLVYFT 147
           + + +++   
Sbjct: 398 YLMLSVMVPI 407


>gi|215447993|ref|ZP_03434745.1| transmembrane protein [Mycobacterium tuberculosis T85]
          Length = 217

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 60/161 (37%), Gaps = 1/161 (0%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                AL+++V  +RAG     A ++   ++  PV    R V     LG  ++  +    
Sbjct: 57  QALEAALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAA 116

Query: 74  RYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           R   L       +    + S  G  ++  +    R + +R+   A+V A    A+ASA I
Sbjct: 117 RSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAI 176

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           +  LP     L        ++ L+    G  LL V      
Sbjct: 177 LAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLES 217


>gi|126179945|ref|YP_001047910.1| type II secretion system protein [Methanoculleus marisnigri JR1]
 gi|125862739|gb|ABN57928.1| type II secretion system protein [Methanoculleus marisnigri JR1]
          Length = 307

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 56/174 (32%), Gaps = 3/174 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGL-SL 65
           R        P A++ +     AG+   +   ++   +       E R +          L
Sbjct: 126 RRRNIDATLPYAINYVTAMSSAGITPDEVFRLLGQSTIYGESAVEARYISRETDFFGKDL 185

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++  + +  P + +  F          G NL+E   N +       N + K    ++ 
Sbjct: 186 LDALRTVSQATPSERMREFLQGAVASISSGSNLTEYFRNKAHQYTLENNQQQKSFLETLG 245

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             A +++   +   +  L+   S   +    +DP    ++          + V+
Sbjct: 246 LIAESYVTA-MVAGMLFLIILQSVMTILSGDSDPFFLYVIIYMIVPFGSMMFVV 298


>gi|91794738|ref|YP_564389.1| type II secretion system protein [Shewanella denitrificans OS217]
 gi|91716740|gb|ABE56666.1| type II secretion system protein [Shewanella denitrificans OS217]
          Length = 422

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/153 (10%), Positives = 44/153 (28%), Gaps = 6/153 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               I   + AG+P+   + ++        +R     +I     G+ LS ++        
Sbjct: 87  LTRQIATMLAAGVPLVTTLELLGRGHEKPKMRELLAIIIADVQSGIPLSNALR-----PH 141

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +        +    +  G L      ++      + +K+K++       A   +  ++ 
Sbjct: 142 RRYFDDLYVDLVAAGEHSGALDLVFDRIAIYKEKAEALKSKIKKAMFYPAAVVVVAVAVT 201

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             +   V             +      L +  +
Sbjct: 202 VLLLLFVVPQFEDIFAGFGAELPAFTQLVLGIS 234


>gi|238754543|ref|ZP_04615897.1| General secretion pathway protein F [Yersinia ruckeri ATCC 29473]
 gi|238707174|gb|EEP99537.1| General secretion pathway protein F [Yersinia ruckeri ATCC 29473]
          Length = 377

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 63/173 (36%), Gaps = 8/173 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60
           K+   KR +K   +       +   + + + + +A+  I  Q+ +  V +   ++ E   
Sbjct: 29  KNKNNKRISK--SELITFTRQLATLISSSIAIDEALDTIANQTDNKSVLNIIFKIKEKIT 86

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SLSESI    R   +         +    +  G+L   L  L+  + + + +K K+ 
Sbjct: 87  SGHSLSESIMLFPRAFNI-----LYHSMITAGETSGHLGVTLHRLADNIEETQRVKNKLV 141

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
              +   A   +   +   + ++V          +  +      L ++ +  +
Sbjct: 142 QSLIYPCALLLVSIGVISILLSVVVPKVLEQFIYMGQELPFSTKLLLSISDFI 194


>gi|153853655|ref|ZP_01995035.1| hypothetical protein DORLON_01026 [Dorea longicatena DSM 13814]
 gi|149753810|gb|EDM63741.1| hypothetical protein DORLON_01026 [Dorea longicatena DSM 13814]
          Length = 376

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 9/142 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--------QSSDPVRSEF 52
           ++   ++R  + ++D+P  +  +   + AG+ V  A   I          ++   V  E 
Sbjct: 215 IRKAEEERKKQMIEDYPEVISKLTLYLGAGMTVKKAWRKITEGYMKEKEDENERYVYEEM 274

Query: 53  RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRD 111
           R+       G++ +E      R   LQ       ++S    +    LSE L   S    +
Sbjct: 275 RQTCHEMDSGVTEAEGYENFGRRCDLQIYIRLGALLSQNLRKGTKGLSELLKLESIQAFE 334

Query: 112 RKNMKAKVQALSMEAKASAWII 133
            +  +AK        K    + 
Sbjct: 335 ERKARAKRLGEEAGTKLLLPMF 356


>gi|86742973|ref|YP_483373.1| type II secretion system protein [Frankia sp. CcI3]
 gi|86569835|gb|ABD13644.1| type II secretion system protein [Frankia sp. CcI3]
          Length = 448

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 59/171 (34%), Gaps = 4/171 (2%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI----ETQHLGLSLSESISRMV 73
           + L      + AG P  +A+    G   + V +   R      +     L  +E    ++
Sbjct: 79  DLLAAFAAELDAGAPQLEALRRAAGGIDELVAAPAGRSAWLPIDQLGAALDRTEEPGALL 138

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                  +        V + +G  L+     L+ + R       ++ +     ++S  ++
Sbjct: 139 CRSEASSLRQLGVAYQVCAAVGARLAPVATMLAAVARADAVRAGELTSALAGPRSSGRLV 198

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            SLP     L        + VL+  P G   L V     L+G+  +R + +
Sbjct: 199 ASLPLAGIVLGSLAGAAPIAVLLGTPAGIGCLLVGGLADLVGVRWLRRLAD 249



 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 59/171 (34%), Gaps = 17/171 (9%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
            +FL DFP ALD+I   +R+G  +  A   +   +   + +E   V +    G ++  + 
Sbjct: 276 NRFLADFPLALDLIAACLRSGETIMSAARAVGAATGGVLGAELCSVGDALAAGATVGAAC 335

Query: 70  SRMVRYMPLQEVSFFSTVI-SVQSQLGGNLSEALANLSRILRDRKNM------------- 115
            R+V       ++               +    +   + +  DR  M             
Sbjct: 336 ERLVAASHAPRLTDRLPGWARRGRVTPPSRRARMVRAAIMALDRAEMSGAKLAATLTRLA 395

Query: 116 ---KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
              + +  A S+ A   A ++   P  +  L  F   G + +++      +
Sbjct: 396 DRARDEAHAESIAAARRAGVLAVAPLGLCFLPAFLLLGVVPMVLGSVPALL 446


>gi|328945104|gb|EGG39259.1| bacterial type II secretion system protein F [Streptococcus
           sanguinis SK1087]
          Length = 408

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 51/174 (29%), Gaps = 10/174 (5%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
               L D       +   + +G+P+++AV ++  Q+         +VI       +    
Sbjct: 57  KKIKLKDISLFCKQMSVMLNSGIPLNNAVDILEQQTDAKNLKASLKVISKGLKEGN---- 112

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                              +    +  G L E L  +S           +++   +    
Sbjct: 113 QLSKALIEQNGLFPDLLIRMVQAGEKTGKLDEVLERMSEHYNKELKTSRQIRGAMIYPAV 172

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGIMVM 179
            A++  +       L+Y   P +  +         L   + +AA+  +     +
Sbjct: 173 LAFLAVAATLV---LLYVVIPNFSGIFEQSGVALPLPTRIVLAASNFVQSYWYI 223



 Score = 44.3 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 37/130 (28%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+ +A+      +++ V  +  R+         L +           
Sbjct: 270 FASTLATLTSAGIPLVEAIDSAAATTNNAVVIDKLRIANE-----GLQKGERLTGMLTST 324

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G+L   L   S    +      K     +E     ++   +  
Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLNKTSDFYEEELEAAIKQLLSLLEPAMIIFMGVIIGG 384

Query: 139 CVSTLVYFTS 148
            V++++    
Sbjct: 385 IVASVMLPMF 394


>gi|299144142|ref|ZP_07037222.1| putative bacterial type II secretion system protein F
           [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518627|gb|EFI42366.1| putative bacterial type II secretion system protein F
           [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 393

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 49/164 (29%), Gaps = 9/164 (5%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR     +D    L  +   V A   +  A  V++   S       ++V +       LS
Sbjct: 54  KRRTFNNEDLHILLYQLYVLVNAKNTIPSAFRVLLKSYSGKKNKILKKVYQDLLSAKPLS 113

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++          E       +    +   N+   L NLS    ++  +  K++      
Sbjct: 114 DALKESG------EFPNLVVNMIGVGENSSNMILILKNLSEYYLNKVKLDKKIRNALSYP 167

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
                +     F V+ L+    P +  V  N       +     
Sbjct: 168 ILLFVVTF---FIVNFLMLNILPTFAEVFKNSGAELPYITQILI 208


>gi|329895107|ref|ZP_08270835.1| general secretory pathway protein F [gamma proteobacterium
           IMCC3088]
 gi|328922508|gb|EGG29847.1| general secretory pathway protein F [gamma proteobacterium
           IMCC3088]
          Length = 407

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/175 (11%), Positives = 60/175 (34%), Gaps = 14/175 (8%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   +++ +P+ +++     QS    +++   +V      G +L+ ++    
Sbjct: 69  DLALMTRQLATLIQSNMPIDESLRAAAEQSRKPKLKALLLQVRARVAEGYTLAYALGEYP 128

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           +             +    +  G L++ L  L+     R+  + K+    +       ++
Sbjct: 129 K-----VFDEMYRAMVTAGEHAGFLAQVLMQLADYTEQRQYTQQKLMMALIYPF---ILL 180

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-----IGIMVMRLMI 183
           G     V  L+ +  P  + +  +       L V    +       G+ ++  ++
Sbjct: 181 GVAVSVVVALMVYVVPELVGIFAHTQTDLPPLTVGLIAVSDFLQHRGLWLLVAIV 235


>gi|328943879|ref|ZP_08241344.1| hypothetical protein HMPREF0091_10569 [Atopobium vaginae DSM 15829]
 gi|327491848|gb|EGF23622.1| hypothetical protein HMPREF0091_10569 [Atopobium vaginae DSM 15829]
          Length = 153

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 59/145 (40%), Gaps = 2/145 (1%)

Query: 3   HLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
            L +KR     L + P  LD+I   + +GL    ++ +     +  +   F+R +    L
Sbjct: 1   MLTRKRNRMMCLQELPTLLDVITLGLSSGLSFEASLDLYCMHYNGVLAQLFQRQLLQYRL 60

Query: 62  -GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
             +S   ++  +   + +  ++ F++ +    + G  L   L++ ++ +RD +  + + +
Sbjct: 61  GVISRRAALQDIADDLHIDALTRFTSTVIQALECGSPLVGVLSDQAQSIRDAQRFELEEE 120

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145
              +  K    +   +   +   + 
Sbjct: 121 IEKIPVKMLIPMGVLIVPAMLISIM 145


>gi|241764544|ref|ZP_04762563.1| type II secretion system protein [Acidovorax delafieldii 2AN]
 gi|241366036|gb|EER60646.1| type II secretion system protein [Acidovorax delafieldii 2AN]
          Length = 424

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 47/166 (28%), Gaps = 4/166 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R     +D    L  +   +RAG+P  DA+  +V +S+         V       L+   
Sbjct: 67  RNQVRAEDLAGFLRDLGLMMRAGVPALDALTTLVEESNSVGNRAMAAVARNMLEDLNAGV 126

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
            ++                 +       G L   LA  +  +    N++  ++   +   
Sbjct: 127 GMTD-AFNRHPNVFPETVRNLVSIGDQTGTLDRMLAEAAEHVERMINIRRDIKTALIYPS 185

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
              ++  S+       +Y+  P    +          +        
Sbjct: 186 ---FVFASIIGVAIFWIYYVVPNMARLFKQLQAKLPPITEGLVAFA 228


>gi|327310806|ref|YP_004337703.1| type II secretion system protein [Thermoproteus uzoniensis 768-20]
 gi|326947285|gb|AEA12391.1| type II secretion system protein [Thermoproteus uzoniensis 768-20]
          Length = 232

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 72/183 (39%), Gaps = 7/183 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHL 61
           HLI  R   F ++FP  L +++  + AG+P+  AVA +   +    +  E   V+    +
Sbjct: 39  HLISARRTHFENNFPYTLGVLLPLLTAGVPLGRAVARLAEVEDDKYIARELSLVVRDMVV 98

Query: 62  GL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
              S  +++      +P Q      +V++  S++   L   L      +  +K M+A   
Sbjct: 99  MGSSPIDALVHSAERVPSQNYRETVSVLARSSRITERLDAVLMARLDWMLRQKQMRAASL 158

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL-----INDPRGHMLLGVAAAFMLIG 175
             S+      ++I +    +   +   S   +  L       DP   M+L       LIG
Sbjct: 159 VRSIAVLFEIYVIAAQLLPILLFIIALSLSPLGTLRIGGISLDPLTVMVLAGLIYSPLIG 218

Query: 176 IMV 178
           ++ 
Sbjct: 219 LVF 221


>gi|283781435|ref|YP_003372190.1| type II secretion system protein [Pirellula staleyi DSM 6068]
 gi|283439888|gb|ADB18330.1| type II secretion system protein [Pirellula staleyi DSM 6068]
          Length = 400

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 62/177 (35%), Gaps = 21/177 (11%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMPLQE 80
            +   +R+G+P+  +++V+  Q+S+P   E    +      G  + + ++R  R      
Sbjct: 68  QLAALLRSGVPLLRSISVLRDQTSNPNLKEILDELYRKVEDGTPMGDVMARFPRA----- 122

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
            S  +  +      GG L +AL  ++     ++ +K +  +        A +  ++   +
Sbjct: 123 FSDMAINMVRAGSEGGFLEDALERVASFTETQEELKGRTISAVAYPLILASVGTTVVTVL 182

Query: 141 STLVYFTSPGYMNVLINDPRGHML---------------LGVAAAFMLIGIMVMRLM 182
                         L  + +  ML               L + A    IG+ +   +
Sbjct: 183 IVFFVPKFATMFERLKANNQLPMLTDWLLKLSDTLRNYGLVIVAVLAAIGVWLYMKL 239



 Score = 34.3 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 13/129 (10%), Positives = 37/129 (28%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
              ++   +  G+P+  A+  I  +++            ++++    S +          
Sbjct: 270 FCRVLGTLLHNGVPILKALE-ISREAAGNRILSKAIADASENISAGQSLAAPLASSGH-- 326

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +   ++    L   L  L+  L  R   +  +    +E      +   +  
Sbjct: 327 --FPKMVVEMISVAEESNTLDRVLVELADSLERRTARQLDLLVRLLEPVMLLILAFIILI 384

Query: 139 CVSTLVYFT 147
            V  L+   
Sbjct: 385 VVIALLVPV 393


>gi|148358894|ref|YP_001250101.1| type II secretory pathway protein LspF [Legionella pneumophila str.
           Corby]
 gi|296106942|ref|YP_003618642.1| general secretion pathway protein F [Legionella pneumophila 2300/99
           Alcoy]
 gi|148280667|gb|ABQ54755.1| type II secretory pathway protein LspF [Legionella pneumophila str.
           Corby]
 gi|295648843|gb|ADG24690.1| general secretion pathway protein F [Legionella pneumophila 2300/99
           Alcoy]
          Length = 399

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/169 (11%), Positives = 47/169 (27%), Gaps = 7/169 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +     ++     D       +   + AG+PV +++  +  Q+      E    +     
Sbjct: 48  QRAASSKSKVSAADLALLTRQLATLLAAGIPVEESLRGVSEQTEKDKVRELIIGVR---- 103

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
              L                           +  G L   L  L+     ++  + KVQ 
Sbjct: 104 SKVLEGYGLAQAMAQYPNAFPELYRATVGSGEQTGRLDVVLEKLADYTEKQQQTRQKVQQ 163

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             +       +  ++   +S L+ F  P  ++V     +    +     
Sbjct: 164 ALIYPLLMIIVSTAI---ISFLLTFVVPKIIDVFTESGQTLPPMTQLLI 209


>gi|82778253|ref|YP_404602.1| putative type II secretion protein [Shigella dysenteriae Sd197]
 gi|81242401|gb|ABB63111.1| putative type II secretion protein [Shigella dysenteriae Sd197]
          Length = 399

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTCQLATLVQAAIPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
            S+   +   V        + L +        L+ ++ A    G+  
Sbjct: 183 TSVVTILLAAVVPKIIEQFDHLGHALPATTRALIAMSDALQASGVYW 229


>gi|117924239|ref|YP_864856.1| type II secretion system protein [Magnetococcus sp. MC-1]
 gi|117607995|gb|ABK43450.1| type II secretion system protein [Magnetococcus sp. MC-1]
          Length = 408

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/163 (9%), Positives = 56/163 (34%), Gaps = 9/163 (5%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
               +++    L  +   ++AG+P+   +   I    +  +    ++++     G SL+E
Sbjct: 64  KKVTMEELAEGLTNMAVMLKAGIPLITCLKDTIADHDNSTLSKVGQQLVMRVEGGSSLAE 123

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +++   RY P          +    +  G+L + + + +   +    ++   ++      
Sbjct: 124 ALAAYPRYFP-----DTLVFLVRLGEETGSLDQTVRDAAAHTQKMDKIRRDTKSALTYPT 178

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
              ++  ++   +   +Y   P   ++         +      
Sbjct: 179 ---FMFVAIFGAMFFWIYLVVPPMADMFKQFQLDLPVFTKMVI 218



 Score = 34.7 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 41/144 (28%), Gaps = 15/144 (10%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLSESISRMV 73
           +       +   +RAG+ V   + V+     + +  E    ++     G+ L ES  ++ 
Sbjct: 274 NLAFITQYMSMMLRAGVDVMRTLQVLKEAIPNEIYREHLDQVQENLVSGIGLRESFDKVG 333

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                     F   +    +  G LSE L  ++   R        V+   +       + 
Sbjct: 334 ------IFPNFVVRMIGVGEQSGTLSEQLEYIAEDYR--------VKLDELVGNIGKLVE 379

Query: 134 GSLPFCVSTLVYFTSPGYMNVLIN 157
                    L    +      L  
Sbjct: 380 PIAIVVGGGLFIALAMALFAPLYQ 403


>gi|170723698|ref|YP_001751386.1| type II secretion system protein [Pseudomonas putida W619]
 gi|169761701|gb|ACA75017.1| type II secretion system protein [Pseudomonas putida W619]
          Length = 402

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 55/181 (30%), Gaps = 21/181 (11%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                 +   +RAG+P+  A  V+     S    +   R+ +    GL L++++ R  + 
Sbjct: 66  AGFSRQLATLLRAGVPLLQAFQVMGRSGCSAAQAALLERLKQDVAAGLGLADALQRHPQ- 124

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                       +    +  G L   L  L+ +L  R+ +  +V+   +           
Sbjct: 125 ----WFDGLYCNLVRVGEQSGTLDRQLEQLAGMLEQRQALLKRVRKAMLYPLLLLLTGLG 180

Query: 136 LPFCVSTLVYFTSPGYMNVL-------------INDPRGH--MLLGVAAAFMLIGIMVMR 180
           +   +   V                        ++   G    LL +    + +G+  + 
Sbjct: 181 VSAVLLLEVIPRFESLFAGFDAALPAFTQWVIDLSTGLGRHGPLLLITLLVVALGMRQLY 240

Query: 181 L 181
            
Sbjct: 241 R 241



 Score = 35.1 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/137 (9%), Positives = 40/137 (29%), Gaps = 7/137 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISR 71
                     +  +  AG+P+ D +  +       +      R+ +    G  L ++++ 
Sbjct: 266 QAALARFARSLATAYAAGVPLLDGLGTVARACGGELHERAILRLRQGMANGQGLHQAMAA 325

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              + P          ++   +  G L + L   + +  ++ +         +E      
Sbjct: 326 EPLFPP------LLVQLTAIGESSGTLDQMLEKAASLYEEQVSQALDQLTSLLEPAIVLV 379

Query: 132 IIGSLPFCVSTLVYFTS 148
           +   +   V  +     
Sbjct: 380 LGLLVGGLVVAMYLPIF 396


>gi|238793626|ref|ZP_04637249.1| Type II secretion system protein [Yersinia intermedia ATCC 29909]
 gi|238727041|gb|EEQ18572.1| Type II secretion system protein [Yersinia intermedia ATCC 29909]
          Length = 194

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 54/130 (41%), Gaps = 4/130 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +++++ K+    L+  P  +DI    V++G+ +  A++    +    +  +     ++ +
Sbjct: 51  IRNILNKKIKCLLNSLPFFIDITAACVQSGMTIDSALSYTAKKFILINPDLSLIVTKITK 110

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +   L  +I    +     E+  F + +      G  + + L  L++ +R+ + +  
Sbjct: 111 RAEIN-GLESAIKEFQQLSTETEIKMFCSALQYSISFGSTVYDQLIKLAQDMREMQLLVT 169

Query: 118 KVQALSMEAK 127
           + +   +  K
Sbjct: 170 EEKNSKLSTK 179


>gi|238062113|ref|ZP_04606822.1| type II secretion system protein [Micromonospora sp. ATCC 39149]
 gi|237883924|gb|EEP72752.1| type II secretion system protein [Micromonospora sp. ATCC 39149]
          Length = 301

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/183 (8%), Positives = 55/183 (30%), Gaps = 4/183 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++  A+           +      G  +  A+   +  + + +  E R +     
Sbjct: 102 VGRAEQQAIARIE-AVGEWTRRLKDVSSTGQGLQQAILGTLATAPEEIEEEVRLLAARLQ 160

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQS-QLGGNLSEALANLSRILRDRKNMKAKV 119
            G     ++      +           + +     G  L + L +++         + ++
Sbjct: 161 AGWLAKSALLAFADEIGDPVCDQVVAALILHLSDRGERLGDVLGSIAGAAAAEVATRREI 220

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +A   + + +   +  +           +  Y+      P G +++ V  +  +  +  +
Sbjct: 221 EAKRTQPRFAVRFLTGMTLLTLAY-GLVNTDYIRP-YGTPFGQLVMFVLGSAFVGLLAWV 278

Query: 180 RLM 182
           R M
Sbjct: 279 RAM 281


>gi|258515887|ref|YP_003192109.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
           771]
 gi|257779592|gb|ACV63486.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 401

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 51/154 (33%), Gaps = 5/154 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            D           + +G+P+  A+ + +  +         +++     G SLS ++S   
Sbjct: 63  KDLAAFSRNFASLINSGIPILKALILSMQTNKKSFNVVLDQLVLDLKAGSSLSGAMSNYP 122

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R+ P          +    + GG L + L  L+    +  ++  KV+A            
Sbjct: 123 RFFPK-----IFIGMIAAGESGGVLGQVLDRLAIHFENVSSLSDKVKAALSYPVLVVATA 177

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
                 + T+V     G +  +        ++ V
Sbjct: 178 ILCLVLMMTMVLPVFEGMLQDVNASLPFITVVVV 211



 Score = 34.7 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 42/133 (31%), Gaps = 7/133 (5%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                  +   + +G+PV  ++ ++     ++ +     R  +    G S++  +     
Sbjct: 267 LARFCRTLSTLLYSGIPVLASLHIVKETIGNEIIIKAVSRTCDCIEKGESIAVPLKESGF 326

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           + P          +    +  G L E L   + IL           +  +E      I G
Sbjct: 327 FPP------LLIHMITVGEETGALGELLEKAAAILDREIETTVTNMSSMLEPLLVLIIGG 380

Query: 135 SLPFCVSTLVYFT 147
            + F   +++   
Sbjct: 381 IVGFIFISVLLPV 393


>gi|125719093|ref|YP_001036226.1| general secretory pathway protein F [Streptococcus sanguinis SK36]
 gi|125499010|gb|ABN45676.1| General secretory pathway protein F, putative [Streptococcus
           sanguinis SK36]
          Length = 408

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 51/174 (29%), Gaps = 10/174 (5%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
               L D       +   + +G+P+++AV ++  Q+         +VI       +    
Sbjct: 57  KKIKLKDISLFCKQMSVMLNSGIPLNNAVDILEQQTDAKNLKASLKVISKGLKEGN---- 112

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                              +    +  G L E L  +S           +++   +    
Sbjct: 113 QLSKALIEQNGLFPDLLIRMVQAGEKTGKLDEVLERMSEHYNKELKTSRQIRGAMIYPAV 172

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGIMVM 179
            A++  +       L+Y   P +  +         L   + +AA+  +     +
Sbjct: 173 LAFLAVAATLV---LLYVVIPNFSGIFEQSGVALPLPTRIVLAASNFVQSYWYI 223



 Score = 44.3 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 37/130 (28%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+ +A+      +++ V  +  R+         L +           
Sbjct: 270 FASTLATLTSAGIPLVEAIDSAAATTNNAVVIDKLRIANE-----GLQKGERLTGMLTST 324

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G+L   L   S    +      K     +E     ++   +  
Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLNKTSDFYEEELEAAIKQLLSLLEPAMIIFMGVIIGG 384

Query: 139 CVSTLVYFTS 148
            V++++    
Sbjct: 385 IVASVMLPMF 394


>gi|163816763|ref|ZP_02208126.1| hypothetical protein COPEUT_02953 [Coprococcus eutactus ATCC 27759]
 gi|158448020|gb|EDP25015.1| hypothetical protein COPEUT_02953 [Coprococcus eutactus ATCC 27759]
          Length = 403

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/177 (11%), Positives = 53/177 (29%), Gaps = 6/177 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLS 66
           +      D           ++AG+ +  A+ ++  Q  +  +R   +        G +L+
Sbjct: 56  KKKVKSRDLGVFCKQFSAVIKAGVTIISALELMGDQIENKTLRKAIQDARTYVEKGGTLA 115

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++        P          +    ++ GNL   L  L         + +K++      
Sbjct: 116 DAFRVNPDVFPP-----IMINMVAAGEMSGNLEICLDRLVEHFEKDNALTSKIKGAMTYP 170

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
                ++  +   V   V          +         + +AAA  +     + ++I
Sbjct: 171 IVVLIVMVIVIIVVLVAVIPNFASMFEDMGTQLPLATRIMMAAADFVKYKWWLLIII 227



 Score = 38.9 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/139 (10%), Positives = 48/139 (34%), Gaps = 10/139 (7%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+ + DAV  +     + +  +           + +S+ +        +
Sbjct: 270 FARTMSTLMASGISMIDAVEQVAKMMDNKIIRDGL-----MDAKVQVSKGVPLSKPLKDM 324

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           + +    + ++   +  G++ E L+ ++    +           +ME      II  +  
Sbjct: 325 EMLPPMLSAMTKIGEETGDIEEMLSKVADYYDEEVEAATNALTSAMEP-----IIMVILA 379

Query: 139 CVSTLVYFTSPGYMNVLIN 157
           C+  ++     G +  + +
Sbjct: 380 CIVGMIVAAVYGPIMSMYD 398


>gi|309785194|ref|ZP_07679825.1| general secretion pathway protein F [Shigella dysenteriae 1617]
 gi|308926314|gb|EFP71790.1| general secretion pathway protein F [Shigella dysenteriae 1617]
          Length = 399

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V+A +P+   +  +  QS    V+S    +      G +LS+S+    
Sbjct: 68  DLALFTCQLATLVQAAIPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G+L   L  L+     R+ +K+++    +       + 
Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
            S+   +   V        + L +        L+ ++ A    G+  
Sbjct: 183 TSVVTILLAAVVPKIIEQFDHLGHALPATTRALIAMSDALQASGVYW 229


>gi|148927986|ref|ZP_01811385.1| type II secretion system protein [candidate division TM7 genomosp.
           GTL1]
 gi|147886664|gb|EDK72235.1| type II secretion system protein [candidate division TM7 genomosp.
           GTL1]
          Length = 331

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/164 (12%), Positives = 57/164 (34%), Gaps = 11/164 (6%)

Query: 26  SVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFF 84
              AG+P+  ++  +   + +  +R     V +    G +L++++++          +  
Sbjct: 1   MTGAGVPLLRSLNALQAHTENEALRKVLASVAKEVQAGSTLTDALAKHPEA-----FNDI 55

Query: 85  STVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144
              +    +  G L E L  L+       +++ KV++         +I     F +   V
Sbjct: 56  YVNMVRAGEAAGILDEILKRLALQQEKNASIRKKVKSAMTYPLILLFITLVSFFGLMLFV 115

Query: 145 YFTSPGYMNVLINDP-----RGHMLLGVAAAFMLIGIMVMRLMI 183
                  +  L            ++LG++        +++  ++
Sbjct: 116 VPQIGKIVEDLSAPGTELPVLTQIMLGISGFMQQFWYLIIIAVV 159


>gi|15642869|ref|NP_227910.1| general secretion pathway protein F, putative [Thermotoga maritima
           MSB8]
 gi|4980584|gb|AAD35188.1|AE001696_2 general secretion pathway protein F, putative [Thermotoga maritima
           MSB8]
          Length = 399

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 56/183 (30%), Gaps = 22/183 (12%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRSEFRRVIETQHLGLSLSESISRM 72
           +       +   + AG+ + +A+ ++  Q+  S   R     +      G SL+E+  + 
Sbjct: 61  EIATFCRQLSIMISAGIRIKEALNILARQTVFSRRFRKVILEIALNVETGDSLAEAFRKT 120

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    + GG L   L   +      K ++ +V++         + 
Sbjct: 121 G------VFDNVLISMLEAGEEGGVLDRTLKRAADFYESIKRLQDEVKSAMAYPLFVLFF 174

Query: 133 IGSLPFCVSTLV-----------YFTSPGYMNVLINDPR---GHMLLGVAAAFMLIGIMV 178
              +   +S  +              SP   ++L  +           V    ++ GI V
Sbjct: 175 AVVIVLVISFYILPNLVRAFGTSIPLSPTIRSLLKANEFLSENWPWFSVLVTGIIAGIFV 234

Query: 179 MRL 181
           +  
Sbjct: 235 LMK 237


>gi|170721363|ref|YP_001749051.1| general secretion pathway protein F [Pseudomonas putida W619]
 gi|169759366|gb|ACA72682.1| general secretion pathway protein F [Pseudomonas putida W619]
          Length = 399

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 63/165 (38%), Gaps = 11/165 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +       +   + AG P+  A+  ++        ++   RV E    GL LS+++    
Sbjct: 62  ELITITQQLTTLLSAGQPLDRALGTVLKNVRRPAAKAVLERVREQVKAGLPLSQALEEHP 121

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S F T +    + GG L   LA L+  L     ++ +V    +      +++
Sbjct: 122 -----GSFSPFYTSLVRAGEAGGVLEVTLAQLAGYLEQSHKLRGEVINALIYPA---FLV 173

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             +   ++ L+ +  P ++ +  +   G  +  V  A + +G  V
Sbjct: 174 IGVVGSLALLLAYVVPQFVPIFQD--LGVPIPLVTRAVLAMGEFV 216


>gi|157376160|ref|YP_001474760.1| type II secretion system protein [Shewanella sediminis HAW-EB3]
 gi|157318534|gb|ABV37632.1| type II secretion system protein [Shewanella sediminis HAW-EB3]
          Length = 403

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 61/178 (34%), Gaps = 28/178 (15%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +++G+ +  A++V+    S   +    +++      G SLSE++++  +       
Sbjct: 74  LSLLLQSGVKIDKALSVLARTKSGTALADLLQKLSNDVRKGQSLSEAMAKHPK-----VF 128

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  GNL E  A L++ L+ RK +K+K+    +       +       + 
Sbjct: 129 DNLYINLVTIGESSGNLVEVFAGLAQDLKYRKELKSKITQAIVYPSVILLVCICSVLFIF 188

Query: 142 TLVYFTSPGYMNVLINDPRGHML------------------LGVAAAFMLIGIMVMRL 181
             V       + V+  D     +                  L V  A +  G   M  
Sbjct: 189 NFVVPK----LTVMFADAAELPIYTEILLGVSDWIQSYQIHLFVVVAAIAFGFRWMMQ 242


>gi|149178117|ref|ZP_01856712.1| type 4 fimbrial assembly protein pilC [Planctomyces maris DSM 8797]
 gi|148843037|gb|EDL57405.1| type 4 fimbrial assembly protein pilC [Planctomyces maris DSM 8797]
          Length = 402

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/181 (9%), Positives = 56/181 (30%), Gaps = 12/181 (6%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSL 65
           +R              +   +++G+P+  ++ ++  Q ++  ++     V      G  L
Sbjct: 57  RRVRA--RYLSIFYTQLADLLKSGVPLLRSLELLNKQSTNPSLKQVLEEVRAEVADGTRL 114

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           + ++ +  +       S  +  +    + GG L + L  ++     ++ +K +V    + 
Sbjct: 115 AVAMGQHPK-----VFSELAVSMVRAGEEGGFLEDVLKRIASFTDHQEELKNRVVGAMIY 169

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP----RGHMLLGVAAAFMLIGIMVMRL 181
                     +   +              +            LLG +A       ++   
Sbjct: 170 PAFLTTFGTVIVSFLLVYFVPKFEPIFARMSERGELPWATTTLLGFSAFMQSYWFIIFFS 229

Query: 182 M 182
           +
Sbjct: 230 I 230



 Score = 35.5 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/136 (10%), Positives = 40/136 (29%), Gaps = 5/136 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                  I+   +  G+P+  ++  I   ++             + +    S +      
Sbjct: 268 AIARFCRILGTLLANGVPILQSL-RIAKDAAGNKVISKSIGEAAESISAGKSIAQPFASS 326

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
               +E       +    +   NL + L +++  +  + N K  +    +E      +  
Sbjct: 327 GQFPEE----VVEMIAVGEEANNLEQVLIDIADNMERQTNRKLDMFVRMLEPLMLLLMAA 382

Query: 135 SLPFCVSTLVYFTSPG 150
            + F +  L+      
Sbjct: 383 VVVFVMLALLLPVFQS 398


>gi|223936164|ref|ZP_03628077.1| type II secretion system protein [bacterium Ellin514]
 gi|223895026|gb|EEF61474.1| type II secretion system protein [bacterium Ellin514]
          Length = 452

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 63/195 (32%), Gaps = 22/195 (11%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLP-VSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           R              +  ++ AG+P +     +   +++   ++    V  +   G + S
Sbjct: 95  RARVKTKQLCIFTRQLSTALDAGMPLLRCLRLLEEQETNPSFKNIITGVGSSIEGGCTFS 154

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++++  R       +     +    +L G+L   L  LS      + +K KV A     
Sbjct: 155 EALAQHPR-----VFNHLYLSMVRAGELSGSLEITLKRLSDFTEKTEKIKRKVIAALFYP 209

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLI----------------NDPRGHMLLGVAAA 170
            A   +   +   +   V          ++                +  R H +L  A A
Sbjct: 210 AAVISVATGVMGIMLLYVIPKFKAVFEGMMNGKPLPAFTRLVLGISDSIRSHFVLTAAIA 269

Query: 171 FMLIGIMVMRLMINF 185
             + GI+++ L    
Sbjct: 270 AAVYGILLLSLRTRV 284


>gi|260768630|ref|ZP_05877564.1| type II secretion system protein [Vibrio furnissii CIP 102972]
 gi|260616660|gb|EEX41845.1| type II secretion system protein [Vibrio furnissii CIP 102972]
          Length = 296

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 56/147 (38%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           ++    +R     ++   A+ ++    + GL +   +     ++S     +  +   +I 
Sbjct: 136 IRMQANRRAKIIDEEMLTAVHMMAILWQVGLSLERLLKTYHQEASDLTPEMNKDIALIIA 195

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +       M             +++S  S+ GG L ++  +L+ +L +RK +  
Sbjct: 196 RIDAGQNREWVFRDMATLTLSTGFQDLLSMLSQGSETGGGLKKSFQSLADLLYERKRVAL 255

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +   M  K S  ++  +   +  ++
Sbjct: 256 QEKVTKMSGKISVTMMALMFPALFIIL 282


>gi|103485812|ref|YP_615373.1| general secretion pathway protein F [Sphingopyxis alaskensis
           RB2256]
 gi|98975889|gb|ABF52040.1| General secretion pathway protein F [Sphingopyxis alaskensis
           RB2256]
          Length = 405

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/183 (10%), Positives = 48/183 (26%), Gaps = 6/183 (3%)

Query: 2   KHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + L+  R  +    +       +        P+ +A+  +  QS     +E  R +    
Sbjct: 53  RSLLAFRKDRLGRKELALFTRQLATLAEV-APLEEALRTLTRQSE----AESARGVIADV 107

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
               L                      +    +  G+L+  LA L+ +L  +  ++ K+ 
Sbjct: 108 HAGLLEGRRLADAMARQPTSFPPLYRAMVAAGETTGSLTVILARLADLLERQAEVRGKLI 167

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A        A +   +   +   V                      +  +        + 
Sbjct: 168 AALAYPIVLAVVAIGVVAALMIFVVPRVVEQFTDTGQRLPFLTRAVIGVSSFAANWWWLI 227

Query: 181 LMI 183
            ++
Sbjct: 228 ALL 230


>gi|262163781|ref|ZP_06031521.1| general secretion pathway protein F [Vibrio mimicus VM223]
 gi|262027761|gb|EEY46426.1| general secretion pathway protein F [Vibrio mimicus VM223]
          Length = 393

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 60/160 (37%), Gaps = 6/160 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71
            +     L  +     +G+P+   +  ++  S+D   +   +R+      G SLSE+I+ 
Sbjct: 55  REVLITTLRELATLRESGMPLDQCINSLLENSTDRQMALVLKRLHSDIESGSSLSEAIAA 114

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P      + + +    +  G L EAL ++S  +   + + ++V++          
Sbjct: 115 QPDSFPY-----YVSSMLRLGEASGQLGEALFSISERIEREEKLVSEVKSALTYPAFLLI 169

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
           +  +  F +   V       +   I+      LL ++A  
Sbjct: 170 VCVATIFFMFLYVIPNFETMVQEGIDAGALGNLLAISAFL 209


>gi|258651872|ref|YP_003201028.1| type II secretion system protein [Nakamurella multipartita DSM
           44233]
 gi|258555097|gb|ACV78039.1| type II secretion system protein [Nakamurella multipartita DSM
           44233]
          Length = 311

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 64/169 (37%), Gaps = 13/169 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   + K+  + + +FP   +++  SV AG   + A+  +   +  P+ S+   V+    
Sbjct: 155 LTQAVSKQEEEIIAEFPVIAEMLALSVTAGESPTGALDRVTKLAHGPLVSQLSGVLAETR 214

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G     +++ +     L+ ++ F   ++V  + G  L++ L   +  +R         +
Sbjct: 215 AGTPFLTALTHLRDRTRLEPLARFLDGMAVAIERGTPLADVLRAQAADVRALS------K 268

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
              +E+     I   +P     L        + +L     G + +   A
Sbjct: 269 RQLLESGGRKEIAMMVPVVFLVL-------PITILFALYPGLLAITTVA 310


>gi|319941897|ref|ZP_08016218.1| hypothetical protein HMPREF9464_01437 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804550|gb|EFW01420.1| hypothetical protein HMPREF9464_01437 [Sutterella wadsworthensis
           3_1_45B]
          Length = 297

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 62/142 (43%), Gaps = 2/142 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR--RVIET 58
           +  L ++R  +     P A+D++   +  G+ + +A   +  + +       +  R+   
Sbjct: 140 LSELAERRQNRIRLFIPKAVDLLTICMSCGMSLEEAFDRVASEIARRAPEVAKEFRMTRY 199

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           + L ++ + ++ R+     ++E+   +  +    Q G  L+EAL +++   R  +  + +
Sbjct: 200 EMLVVNRTVALKRLEARSGVREMKILANSLLQSIQYGTPLTEALQSIAAEARAGQLSELE 259

Query: 119 VQALSMEAKASAWIIGSLPFCV 140
            +A  + A     +I  + F V
Sbjct: 260 QKAGRISAVIGVPLIVLVLFPV 281


>gi|317489334|ref|ZP_07947848.1| hypothetical protein HMPREF1023_01547 [Eggerthella sp. 1_3_56FAA]
 gi|316911579|gb|EFV33174.1| hypothetical protein HMPREF1023_01547 [Eggerthella sp. 1_3_56FAA]
          Length = 350

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 55/162 (33%), Gaps = 8/162 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
             + +     AG+ + +AV ++     D   +     V +   +G  L+ ++        
Sbjct: 14  FCESVAVMHSAGIQMDEAVFLLGENMEDAAFKRACDDVYKELIVGKPLALAMDDSG---- 69

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
              +      +    +  G L   L +L+R   +   + AK++       A   ++ ++ 
Sbjct: 70  --CLPSHVVDMVGAGEHAGRLENVLWSLARYYDEEDRLYAKIKNAIAYPAALLCVMSAIL 127

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
                ++        + L  +       G   A ++IG + +
Sbjct: 128 LFTVIVILPVFVDVYHGLTGNLTAGS-FGYVNASIIIGWIAL 168


>gi|254496953|ref|ZP_05109790.1| type II secretory pathway protein LspF [Legionella drancourtii
           LLAP12]
 gi|254353808|gb|EET12506.1| type II secretory pathway protein LspF [Legionella drancourtii
           LLAP12]
          Length = 402

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 46/157 (29%), Gaps = 7/157 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            D       +   + AG+PV +++  +  Q+      E    +        L        
Sbjct: 63  ADLSLFTRQLATLLAAGIPVEESLRGVSEQTEKDKVRELIIGVR----AKVLEGYGLAQA 118

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                Q             +  G+L   L  L+    +++  + KVQ   +       + 
Sbjct: 119 MSQYAQAFPELYRATVGSGEQTGHLDAVLEKLADYTENQQQTRQKVQQALIYPILMILVS 178

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             +   +S L+ F  P  + V  +  +    +     
Sbjct: 179 TGI---ISFLLSFVVPKIIEVFTSSGQTLPEMTEILI 212


>gi|134302125|ref|YP_001122094.1| Type IV pili polytopic inner membrane protein [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|134049902|gb|ABO46973.1| type II secretion system protein F/Type IV pili polytopic inner
           membrane protein [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 409

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 48/155 (30%), Gaps = 10/155 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVA--VIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
            D       +    +AG+P+  +    ++       ++     + +    G S S+++  
Sbjct: 69  QDITEMTRQLAIMTKAGIPIIKSFEVFIMGICKHPRLKILAIEIKQAIEGGESFSKALRN 128

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +             +    +  GNL   L  ++      +++K KV+           
Sbjct: 129 FPKI-----FDKLYVGLITAGEESGNLDLMLNKIADQREALQSIKKKVKKALSYPIIVCI 183

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
           I          L+ F  P +  + IN  +    + 
Sbjct: 184 IAAG---VTGILLTFAVPAFSAMFINSGKPLPAIT 215



 Score = 33.9 bits (76), Expect = 9.2,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 49/149 (32%), Gaps = 15/149 (10%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           F          +  +V++G+ ++ A+ ++     +         + ++ + G S  E+I 
Sbjct: 272 FKSSLARFASTLEITVQSGMSLTRALDMVSLATGNAKYDQAALDIKKSINEGASFKEAIV 331

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
                       F    +    +  G L   L NL+R+ ++  +        ++    S+
Sbjct: 332 ETGN------FPFLVEQMIAVGEESGALETMLGNLNRVYQEEVD--------TLVGSLSS 377

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDP 159
            +   +   +  +V F        +    
Sbjct: 378 MLEPLIMIVLGGVVGFLVVSMYMPMFQMG 406


>gi|83859852|ref|ZP_00953372.1| probable type II secretion system protein [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852211|gb|EAP90065.1| probable type II secretion system protein [Oceanicaulis alexandrii
           HTCC2633]
          Length = 418

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 54/165 (32%), Gaps = 11/165 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            +  +   +RAG P+  A   ++ +     +  +   +      G  LSE++SR      
Sbjct: 83  FMRQLATLLRAGAPLLGAFDSLLEEEPCRELSEQMNAIRSDLRAGGRLSEALSR-----H 137

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +  +  +++ +    +  G+L   L  ++  +        +V+         A       
Sbjct: 138 MPTLPDYASRLVELGEATGSLDVRLNEVAAQMERDLTAAEEVRNALSYPAFLAVAGFGAV 197

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
             +     F  P +  +L N       L  +   + IG      +
Sbjct: 198 IFIF---MFVVPRFSTLLDNSDAEIPAL--SRVVLAIGTFFNAHI 237



 Score = 36.6 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 46/132 (34%), Gaps = 7/132 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
            I   ++ AG  + DA+A+      S+  R    +   +   G  L  ++    R     
Sbjct: 288 RITGTALAAGAGLIDALALAEKGVMSERRRQGLEQARRSVRSGDPLESALRAHTR----- 342

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +  +    +L G LSE L  ++          AK      E  A A+I   +   
Sbjct: 343 -TDAMTLNLVRTGRLSGALSEMLIFVAEAGEQDAKNLAKRLTALAEPMAIAFIASIIGLI 401

Query: 140 VSTLVYFTSPGY 151
           V +LV   S  Y
Sbjct: 402 VISLVLAMSSLY 413


>gi|260587079|ref|ZP_05852992.1| putative bacterial type II secretion system protein F domain
           protein [Blautia hansenii DSM 20583]
 gi|260542569|gb|EEX23138.1| putative bacterial type II secretion system protein F domain
           protein [Blautia hansenii DSM 20583]
          Length = 402

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 53/158 (33%), Gaps = 14/158 (8%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG----------QSSDPVRSEFRRVIET 58
             +   D+P+ +  +V  +RAG  +  A+  I                    E  R  + 
Sbjct: 248 RKEMQRDYPDIVQKLVLFLRAGFTIRKAMEKIADGYLRSREKYHAKERSAYEEIVRTCKE 307

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKA 117
              G+  +E+  R      + +    S ++     +   NL E L     +  D +   A
Sbjct: 308 MQGGIYEAEAYERFGTRCGISQYKILSVLLVQNLKKGNQNLLELLEREEAVAEDERKRSA 367

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           KV+      K    ++  L   +  L+    P + + L
Sbjct: 368 KVRGEEASTKLLLPMVLQLIVVLMILMI---PAFFSFL 402


>gi|124027968|ref|YP_001013288.1| hypothetical protein Hbut_1100 [Hyperthermus butylicus DSM 5456]
 gi|123978662|gb|ABM80943.1| conserved crenarchaeal protein [Hyperthermus butylicus DSM 5456]
          Length = 621

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 65/193 (33%), Gaps = 16/193 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I ++  K     P     +    R GL    ++ V+  +    + +  RR+     
Sbjct: 381 VYMRIARKEKKINRSLPAFFRDLSEVRRTGLSPERSIIVLSERDYGELSNVIRRIAAALS 440

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRI----LRDRKNMK 116
           +GL +  +    ++      +      +     +GG     + +L+R     +   +N+K
Sbjct: 441 MGLHVERAFRTAIKGYKSWILRVTMRFLVDAIDVGGGSPTTIDSLARFVSTLIELNENLK 500

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVY------------FTSPGYMNVLINDPRGHML 164
            +++   +     A I+         ++             ++  G    L     G +L
Sbjct: 501 RRLKPFIIMPYFGAVIVAVASILTLAMLVNAIAATGLGTTQYSFGGLQVSLSPAQIGKLL 560

Query: 165 LGVAAAFMLIGIM 177
           L  + A +L G +
Sbjct: 561 LLASIASILNGWL 573



 Score = 39.3 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 62/183 (33%), Gaps = 7/183 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLG 62
               R  +   +FP     +      G+P    +  +   +    +R E RR++    + 
Sbjct: 127 KASSRAERVDMEFPFFAAYMTAMAYGGVPPEKLIERLAEIRMFRALREEARRILRDVKIF 186

Query: 63  L-----SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                 +L  +       +    +  + TVI     +   L      + +   +    +A
Sbjct: 187 GKNILSALEHNALHHPSRLYRDFMLGYLTVIRTGGNVHHYLEVRTQEVIQARMEDLRNRA 246

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL-GVAAAFMLIGI 176
               L +EA  +  ++G+L F +  +V       +   +    G +L   +    + I I
Sbjct: 247 DRVGLIVEAYVAVAVLGTLSFYIFFIVSGLIGRAVGGGLGGTTGLILYSFIVLPLITIAI 306

Query: 177 MVM 179
           +++
Sbjct: 307 LML 309


>gi|325294584|ref|YP_004281098.1| type II secretion system F domain [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065032|gb|ADY73039.1| Type II secretion system F domain [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 402

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 52/165 (31%), Gaps = 7/165 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRM 72
            +       +   + AG+P+ +A+  +     +  +     +++     G SLSES+   
Sbjct: 64  QELAVFFRTLATLLDAGIPLIEAIESLSENFKEDRKKIFMTKIVNNLREGKSLSESLKIA 123

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P               + GG L ++L  ++ IL  R+ +K+ +    +       +
Sbjct: 124 GIKDP------VIVSFVSSGEKGGTLVQSLEIIASILEKREELKSTIINALIYPVVLLVV 177

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
              +   +   V          +         + +  +   I   
Sbjct: 178 AIGVVVFMMLSVIPKIVSIYTSMKISLPLSTKITLFISNGFINYY 222



 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 57/161 (35%), Gaps = 19/161 (11%)

Query: 3   HLIKKRTAKFLD---------------DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP 47
            L K++  +F                 +     + +   ++AG+P+ DA+        + 
Sbjct: 238 FLEKRKKREFDKFKLRLPVFGKLFLYIELNRFFETLSSLLKAGIPIVDAMISATHTVKNE 297

Query: 48  VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR 107
              E R ++    L    S +         ++E+   +  +    +  G L+E L+ +S+
Sbjct: 298 YLKE-RLLLINNELKKGKSLATLFSKE---IKELPTVALQLIKAGEQSGRLAELLSKVSK 353

Query: 108 ILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
            LR+   +  K     +E      I   + F V +L+    
Sbjct: 354 FLRNEVEIYTKNLTSMLEPAIMIIIGLIVGFIVFSLLLPIV 394


>gi|251772571|gb|EES53136.1| putative general secretion pathway protein F [Leptospirillum
           ferrodiazotrophum]
          Length = 407

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 46/147 (31%), Gaps = 6/147 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V AG+P+ DA+  ++ Q  D P+     RV +    G  LS ++  + 
Sbjct: 71  DLSVFTRQMAILVGAGVPIVDALGAVLDQGPDTPMARVASRVRDLVKEGRPLSAAMGEIP 130

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +    +  G L   L  L+ ++  +   + KV            + 
Sbjct: 131 A-----VFSGIYLNMVRAGEESGTLEIMLDRLADLMEKQVGTRRKVLGALFYPLLLMGVG 185

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR 160
             +   +  +V          L     
Sbjct: 186 LLMVVFLLLVVMPRITAVFEGLKATLP 212



 Score = 36.6 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 7/135 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                   +   + +G P+  A+ V     +S PV+    R       G SLS+S+    
Sbjct: 272 QVARFSRTLGVLLASGTPLQKALEVAEAVVTSGPVKEAVARSRVEIAEGRSLSQSLRE-- 329

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +     +  +    +  G L E L  +++      +         +E     +I 
Sbjct: 330 ----SKVFPPLAVHMIAVGERTGKLEELLLKVAQGYETEVDQTVATLTSLIEPVMILFIG 385

Query: 134 GSLPFCVSTLVYFTS 148
           G + F V +++    
Sbjct: 386 GLVLFMVLSVLLPIF 400


>gi|171913110|ref|ZP_02928580.1| type II secretion system protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 411

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 63/171 (36%), Gaps = 12/171 (7%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71
                   + +   +  GL +  A+ V+   Q S  +R    R+ E    G + S+++ +
Sbjct: 68  RAQLILFTEELADLMDGGLQLEQALRVMHERQESPVLRKVSGRIREQLREGATFSKALLQ 127

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           ++   ++ G+L + L  LS  +    +++++V A  +      +
Sbjct: 128 AS-----PSFDEMYCNLATAGEVSGSLPQILRRLSASITQMHDLQSRVVAALVYPA---F 179

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLIND---PRGHMLLGVAAAFMLIGIMVM 179
           + G+L   +        PG++++L          M +    + ++     +
Sbjct: 180 MFGALIMLLIVFSTVLLPGFVDMLSKSRTKLPFVMEMLGTFSDLVKHWWWL 230


>gi|296278289|pdb|2WHN|A Chain A, N-Terminal Domain From The Pilc Type Iv Pilus Biogenesis
           Protein
 gi|296278290|pdb|2WHN|B Chain B, N-Terminal Domain From The Pilc Type Iv Pilus Biogenesis
           Protein
          Length = 116

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 37/109 (33%), Gaps = 5/109 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            D       +   + AGL +  A+A++  Q+ +    E  + +        +   ++   
Sbjct: 13  KDLAIFSRQLATMLGAGLTLLQALAILERQTENRKFREILKQVR-----TDVEGGMAFSE 67

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
                +  S     +    +  G L   L  L+  L     ++ K+++ 
Sbjct: 68  ALSKHKIFSRLYVNLVRAGETSGGLDLILDRLASFLEKELELRGKIRSA 116


>gi|288931798|ref|YP_003435858.1| type II secretion system F domain protein [Ferroglobus placidus DSM
           10642]
 gi|288894046|gb|ADC65583.1| Type II secretion system F domain protein [Ferroglobus placidus DSM
           10642]
          Length = 640

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 63/159 (39%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L  K   K  +  P   + +     +G+ + + + ++    +  +  EF  +  +  LG 
Sbjct: 423 LKNKILRKAEEKLPEFFEELAMLNESGVSIFEGIKLVAKSEAGILSKEFEGISRSVELGE 482

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +++S+S++V  +     +    +     +   ++ +A   +SR +    + + K+++  
Sbjct: 483 PITKSLSKLVVRIKSDIFAKAVPIAVKALETSTSIKDAFITVSRYVDSELSFRKKLKSNL 542

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162
           M   A  ++   +   V+ L+        + +  +  G 
Sbjct: 543 MPYVAIIYLTVLVFLFVAYLLISKFLVTFSGMSVNFMGI 581


>gi|332363540|gb|EGJ41321.1| bacterial type II secretion system protein F [Streptococcus
           sanguinis SK1059]
          Length = 408

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 43/162 (26%), Gaps = 7/162 (4%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
               L D       +   + +G+P+++AV ++  Q++        +++       S    
Sbjct: 57  KKIKLKDISLFCKQMSVMLESGIPLNNAVDILEQQATSKNLKSSLKIVSKSLKEGS---- 112

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                              +    +  G L E L  +S           +++   +    
Sbjct: 113 QLSKAMLDQEGMFPDLLIRMVQAGEKTGKLDEVLEKMSEHYNKELKTSRQIRGAMIYPA- 171

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
              +       V  L+Y   P +  +         L      
Sbjct: 172 --VLAFLAVGAVLALLYIVIPSFSGIFEQSGMAMPLPTRIVL 211



 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+ +A+      +++ V  E  ++         L +           
Sbjct: 270 FASTLAILTSAGIPLVEAIESAAATTNNAVVIEKMKIANE-----GLQKGERLTGMITST 324

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G+L   L   S    +      K     +E      +   +  
Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLVKTSDYYEEELETAIKQLLSLLEPAMIIVMGVIIGG 384

Query: 139 CVSTLVYFTS 148
            V++++    
Sbjct: 385 IVASVMLPMF 394


>gi|299139220|ref|ZP_07032396.1| Type II secretion system F domain protein [Acidobacterium sp.
           MP5ACTX8]
 gi|298598900|gb|EFI55062.1| Type II secretion system F domain protein [Acidobacterium sp.
           MP5ACTX8]
          Length = 396

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 57/175 (32%), Gaps = 20/175 (11%)

Query: 21  DIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
              +  +RAGLP+  ++ ++   Q  +  +++   V      G S+S +           
Sbjct: 66  QQFLTLIRAGLPILSSLDLLAKRQKEESFQAQLEDVTSRIKTGESISSAFEAQG------ 119

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                 T   +  +  GNL E L       R     + K++A  +       ++  L   
Sbjct: 120 SFPLVYTTTLLAGERSGNLEEVLQRFLDFQRVSLTFRKKLKASLIYPAFLIVMVIGLFIF 179

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAA-------------AFMLIGIMVMRL 181
           + T V        + L        L  +A                +LIG +++R 
Sbjct: 180 LITFVVPRFAQLYDQLGTKLPALTLFMLALGQDVQHYGLYILPVLILIGYLLVRW 234


>gi|319956473|ref|YP_004167736.1| type II secretion system f domain protein [Nitratifractor
           salsuginis DSM 16511]
 gi|319418877|gb|ADV45987.1| Type II secretion system F domain protein [Nitratifractor
           salsuginis DSM 16511]
          Length = 416

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 49/142 (34%), Gaps = 6/142 (4%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           +  I     AG+P+ D +  +   +S+  +R  +  +    + G S+S++I         
Sbjct: 77  IRQIAVMTDAGIPIHDTLEDVAANTSNKRLREIYHNIAADINAGKSMSQAIKPYSEEFGH 136

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                 +  ++   +  GN  E+   L+ IL + ++  AK +        +   +     
Sbjct: 137 -----VAIAMTNLGEKTGNFPESYHKLADILENIRDNTAKFKKALRYPLITLTAMAIAFV 191

Query: 139 CVSTLVYFTSPGYMNVLINDPR 160
            +  LV             +  
Sbjct: 192 ILIMLVVPKFRAIFEEFHAELP 213


>gi|56708210|ref|YP_170106.1| Type IV pili polytopic inner membrane protein [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110670681|ref|YP_667238.1| Type IV pili polytopic inner membrane protein [Francisella
           tularensis subsp. tularensis FSC198]
 gi|187931947|ref|YP_001891932.1| Type IV pili polytopic inner membrane protein [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|224457315|ref|ZP_03665788.1| Type IV pili polytopic inner membrane protein [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254370698|ref|ZP_04986703.1| type IV pili polytopic inner membrane protein [Francisella
           tularensis subsp. tularensis FSC033]
 gi|254875024|ref|ZP_05247734.1| type IV pilus polytopic inner membrane protein [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|56604702|emb|CAG45767.1| Type IV pili polytopic inner membrane protein [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110321014|emb|CAL09150.1| Type IV pili polytopic inner membrane protein [Francisella
           tularensis subsp. tularensis FSC198]
 gi|151568941|gb|EDN34595.1| type IV pili polytopic inner membrane protein [Francisella
           tularensis subsp. tularensis FSC033]
 gi|187712856|gb|ACD31153.1| Type IV pili polytopic inner membrane protein [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|254841023|gb|EET19459.1| type IV pilus polytopic inner membrane protein [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|282159429|gb|ADA78820.1| Type IV pili polytopic inner membrane protein [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 409

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 48/155 (30%), Gaps = 10/155 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVA--VIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
            D       +    +AG+P+  +    ++       ++     + +    G S S+++  
Sbjct: 69  QDITEMTRQLAIMTKAGIPIIKSFEVFIMGICKHPRLKILAIEIKQAIEGGESFSKALRN 128

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +             +    +  GNL   L  ++      +++K KV+           
Sbjct: 129 FPKI-----FDKLYVGLITAGEESGNLDLMLNKIADQREALQSIKKKVKKALSYPIIVCI 183

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
           I          L+ F  P +  + IN  +    + 
Sbjct: 184 IAAG---VTGILLTFAVPAFSAMFINSGKPLPAIT 215


>gi|290559841|gb|EFD93164.1| type II secretion system protein [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 356

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 61/177 (34%), Gaps = 1/177 (0%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           K     P+ L ++  ++RAG+   ++    +      + +   +       G +  E++ 
Sbjct: 111 KIEKVLPDMLLLMAANLRAGMIPENSFISSMKPEFGKLNNLLNKAAIETQAGKTFPEALL 170

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            M      +       +IS   + G  L   L NL+  L   +++++ ++A         
Sbjct: 171 EMNDLTSSEFFKDSVRIISESIRSGAELHLILENLASNLLQNESIRSDMRAQVKSYSLFI 230

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           +I  +L   +   V     G M+ +     G            +G+     + N  V
Sbjct: 231 FIAATLAGPLLYGVSSFLIGIMDSVGASTAGSTS-ATNLPSGTLGLFSGFSLPNISV 286


>gi|295098607|emb|CBK87697.1| Type II secretory pathway, component PulF [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 394

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 50/172 (29%), Gaps = 7/172 (4%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
              ++R    +    +    +   ++AGL +S ++ ++  Q            +      
Sbjct: 46  KRCQQRQRWQVQHCYDIFRQLATLLQAGLTLSQSLHMLAEQHPLQHWQALLHSLADDLS- 104

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
                           +  S     +    +L G L      L++  + ++ + AKV+  
Sbjct: 105 ---EGCALSEAMKKWPEVFSPLYVSMVKTGELTGKLEACCRQLAQQQKSQQQLSAKVKKA 161

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
                    I+    F V  +V    P +  +         LL  A   +  
Sbjct: 162 LRYPL---IILTLAVFVVLAMVTLVLPEFAAIYKTFNTPLPLLTQAVMGLAA 210


>gi|269986708|gb|EEZ92988.1| type II secretion system protein [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 298

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 71/178 (39%), Gaps = 6/178 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K    KRT    +    A   I+  V +G+PV +A+  +   +   V  EF+  IE    
Sbjct: 112 KLQAVKRTKLIEEQVVFATREIMIKVGSGVPVFNALLDVANGNYGVVSDEFKEAIEEIES 171

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+   +++  + R +P Q +     ++    + G +++  L+ ++ +L  ++    K  A
Sbjct: 172 GVPQEDALDHLARRVPSQSLRRTIDIMLNAIKSGSDVAGTLSLINDMLIKKQQSDMKSYA 231

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL------INDPRGHMLLGVAAAFML 173
             +   + A+++ S+      +  F   G +            P   ++  +    M+
Sbjct: 232 GELTPMSMAYMLISVVMPSLGMSVFIILGSLAHFNTVAIIYIIPPFLLMFQIFFMGMV 289


>gi|283797116|ref|ZP_06346269.1| conserved hypothetical protein [Clostridium sp. M62/1]
 gi|291075533|gb|EFE12897.1| conserved hypothetical protein [Clostridium sp. M62/1]
          Length = 309

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 68/185 (36%), Gaps = 2/185 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K            +   AL +I  +      +  AV   +   + PV   F+  +    
Sbjct: 120 VKLTASHYKRDVSAELETALSVITTAYLRTEDIVTAVEENIAYLNPPVSKVFQNFLTQIK 179

Query: 61  LGLS-LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           L    +  ++  M   +  +    +   +S       +L   L  +   L D +N+ A++
Sbjct: 180 LVNPNVEAALRGMQGRIDNEVFREWCDALSDCQH-DRSLKTTLTPIVAKLSDMRNVNAEL 238

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           + L  E +    I+         L+Y  +  + +VL++ P G ++L V AA + +    +
Sbjct: 239 EYLIAEPRKEFLIMVIFVIGNIPLMYMLNKDWYDVLMHTPLGQIILSVTAAVIFVSAGCV 298

Query: 180 RLMIN 184
             +  
Sbjct: 299 VKLTR 303


>gi|110626527|gb|ABG79011.1| TadC [Yersinia ruckeri]
          Length = 277

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 53/147 (36%), Gaps = 4/147 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--TQHLGLSLSESIS 70
            +  P  +D++   ++AG+ +  A+           R       +   +   + L +SI 
Sbjct: 130 TEAIPLFIDMVAACIQAGMTIESALTHTAKNFESINRDLSMLFNKIMKKSEIIGLEKSIK 189

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            +    P  E+  F + +      G  + E L  LS  ++  + + A+     +  K + 
Sbjct: 190 EVSIVAPSTEIKMFCSTLQYSLSFGSTVYEQLNTLSAEIKKMQLLIAEEILSKLSTKLTL 249

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLIN 157
            +   +      L+   SP  +  + +
Sbjct: 250 PLFLFMVIPFIVLI--LSPSILGFIYH 274


>gi|78062901|ref|YP_372809.1| type II secretion system protein [Burkholderia sp. 383]
 gi|77970786|gb|ABB12165.1| type II secretion system protein [Burkholderia sp. 383]
          Length = 314

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 59/143 (41%), Gaps = 5/143 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSLSESISRM 72
           FP+ALD++V    AG  ++  +  +  +      P+  E     +   L   ++ +++  
Sbjct: 170 FPDALDLLVICTMAGNSLASGIRRVAHELARICPPLADELTVCADELTLSGDVAATLTHF 229

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +        +T ++   + G  +++AL  LSR  R  + +  + +A  +  K +  +
Sbjct: 230 AMRVDFTSARSLATTLTQSQRFGTPITQALRTLSRTERTEQIVALEERAAKLAPKITLPM 289

Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155
           +  +   V   +    P  + +L
Sbjct: 290 MLFILPTVC--LIAAGPAAIRLL 310


>gi|257092262|ref|YP_003165903.1| type II secretion system protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044786|gb|ACV33974.1| type II secretion system protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 400

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/165 (10%), Positives = 49/165 (29%), Gaps = 4/165 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             +  +    + + VRAG+P+ + +  +      P   E    +     G          
Sbjct: 58  RREIIHFCFHLQQLVRAGVPIIEGLTDLRDSLEHPRFREVVASLIESIEGGQ----TLSQ 113

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 +        +    +  G L E L +L+  L+    + ++ + +       + I
Sbjct: 114 AMESHRRVFDRVFISLIRAGETTGRLPEVLHSLNESLKWEDELASQTKKMIAYPAFVSTI 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +    F +   +      ++  +         +    + +L+   
Sbjct: 174 VVGATFFLMVYMVPQLKMFVKNMGQVLPLQTQILFFVSDLLVAWW 218


>gi|332284399|ref|YP_004416310.1| general secretion pathway protein F [Pusillimonas sp. T7-7]
 gi|330428352|gb|AEC19686.1| general secretion pathway protein F [Pusillimonas sp. T7-7]
          Length = 402

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 52/149 (34%), Gaps = 9/149 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AGL +  A++  + Q+    V      V      G  L E+++   R  P
Sbjct: 68  LTRQLASLLAAGLTLETALSATLDQAERQHVAHALAAVRADIRAGHRLGEALAARPRDFP 127

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G+LS+ +  L+  +  R  ++ K+    +     + +   + 
Sbjct: 128 P-----IYRALIDAGEQSGDLSQVMEKLADYIESRGALRNKILTAFIYPIIVSVVSIGI- 181

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
             +  L+ +  P  +    +  +   LL 
Sbjct: 182 --IIFLLSYVVPQVVGAFNHTQQTLPLLT 208



 Score = 35.1 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/125 (9%), Positives = 32/125 (25%), Gaps = 5/125 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +     +G+P+  A+       S+                 S              +   
Sbjct: 275 LGILTSSGVPLLAALEASRRTLSNDRLRVAVDEATRHVREGSP-----LAPSLAAQKVFP 329

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
                +    +  G +   L   ++ L +    +A      +E     ++ G +   V  
Sbjct: 330 SLLIHLIGSGERTGEMPAMLERAAKTLANELERRAMTMTALLEPLMILFMGGIVLLIVLA 389

Query: 143 LVYFT 147
           ++   
Sbjct: 390 VMMPI 394


>gi|170704228|ref|ZP_02894801.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
 gi|170130863|gb|EDS99617.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
          Length = 255

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 3/131 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRM 72
           FP+ALD++V    AG  ++  V  +  +      P+  E     +   L  ++SE+++  
Sbjct: 111 FPDALDLLVICTMAGNSLASGVRRVARELQRICPPLADELTVCADELTLSGNVSEALAHF 170

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +        +T ++   + G  +++AL  LSR  R  + +  + +A  +  K +  +
Sbjct: 171 ALRVNFSSARSLATTLTQSQRFGTPITQALRTLSRSERTEQVVALEEKAAKLAPKITVPM 230

Query: 133 IGSLPFCVSTL 143
           +  +   V  +
Sbjct: 231 MLFILPTVGLI 241


>gi|167587310|ref|ZP_02379698.1| type II secretion system protein [Burkholderia ubonensis Bu]
          Length = 264

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 58/149 (38%), Gaps = 5/149 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLS 66
              +D+ P  +D++      GL +  ++ V+       +    SE          G +  
Sbjct: 110 QAVVDELPLLVDMLRLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEMGIAQRQFAAGRTRE 169

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+ R+      +++     ++    + GG + E L      LR+ +    + +   +  
Sbjct: 170 QSLQRLASGFDNEDLRAIVRLMIQVDKHGGAVQEPLKQFGDRLREARRAMLRERIGRLTV 229

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           K +  +I +L   +  L+    PG ++V+
Sbjct: 230 KMTGVMIVTLLPAL--LIVTAGPGMISVM 256


>gi|223365708|pdb|2VMA|A Chain A, The Three-Dimensional Structure Of The Cytoplasmic Domains
           Of Epsf From The Type 2 Secretion System Of Vibrio
           Cholerae
 gi|223365709|pdb|2VMA|B Chain B, The Three-Dimensional Structure Of The Cytoplasmic Domains
           Of Epsf From The Type 2 Secretion System Of Vibrio
           Cholerae
          Length = 123

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 6/110 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V++G P+ + +  +  QS    +R+    V      G +LS+S+    
Sbjct: 13  DLALITRQLATLVQSGXPLEECLRAVAEQSEKPRIRTXLVAVRAKVTEGYTLSDSLGDYP 72

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
                              +  G+L   L  L+    +R+  ++K+Q  S
Sbjct: 73  -----HVFDELFRSXVAAGEKSGHLDSVLERLADYAENRQKXRSKLQQAS 117


>gi|163803453|ref|ZP_02197326.1| type IV pilin biogenesis protein PilC [Vibrio sp. AND4]
 gi|159172754|gb|EDP57602.1| type IV pilin biogenesis protein PilC [Vibrio sp. AND4]
          Length = 407

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/143 (11%), Positives = 42/143 (29%), Gaps = 6/143 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMP 77
               I   +  G+P+  A+ ++               +      G  +S+++    ++  
Sbjct: 72  FTRQITTMLMTGVPIVQALKLVAKSHKKAEMKSTLMSITRAVEAGTPISKAMGTTSKHFD 131

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                   T +    +  GNL +    L+      + ++A+V    +       +   + 
Sbjct: 132 P-----LYTNLIATGEQSGNLPQVFDRLATYREKSEQLRARVAKALIYPTMVILVALGVC 186

Query: 138 FCVSTLVYFTSPGYMNVLINDPR 160
           + + T V             D  
Sbjct: 187 YLMLTQVIPEFEKMFVGFGADLP 209



 Score = 35.9 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/136 (9%), Positives = 36/136 (26%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72
                    +  S  +G+P+  A+      S +         V      G+ +  ++   
Sbjct: 271 AAIARFSRTLATSFSSGIPILIALKTTSKISGNMYYQLAIEDVYRDTAAGMPMYVAMRN- 329

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          + +  +  G L + L  ++ I     +      +  +E     ++
Sbjct: 330 -----GNVFPELVWQMVMIGEESGRLDDMLNKIATIYEFEVDSTVDNLSKILEPLLIIFL 384

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V  +     
Sbjct: 385 GVVIGGLVIAMYLPIF 400


>gi|311899776|dbj|BAJ32184.1| hypothetical protein KSE_64250 [Kitasatospora setae KM-6054]
          Length = 323

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/179 (12%), Positives = 60/179 (33%), Gaps = 4/179 (2%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  +           +   +  G+ ++ A+      +   + +E   +           
Sbjct: 106 RRIERLE-ALAEWTQRLADVLLLGVGLNQAIMTSRRTAPAALETEITDLAARLQSRWRPE 164

Query: 67  ESISRMVRYMPLQEVSFFSTVIS-VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           +++      +           +       G  L+ ALA+++  +R+    +  ++A   +
Sbjct: 165 DALRAFGDQVADSTADKVLAALVLRAGDSGPGLARALADMAESVREEVRQRRAIEADRSK 224

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            + +   +  +   V  +  F + GY         G ++LG+ A   +  I  MR +  
Sbjct: 225 HRTTIRWMVGIILLVVVVGSF-NAGYTAP-YTTTIGQLVLGIVAVAFVAVIAWMRSLAR 281


>gi|169634522|ref|YP_001708258.1| general secretion pathway protein F [Acinetobacter baumannii SDF]
 gi|169153314|emb|CAP02423.1| general secretion pathway protein F [Acinetobacter baumannii]
          Length = 401

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 54/163 (33%), Gaps = 11/163 (6%)

Query: 9   TAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66
             KF   D       +   V A +P+ +A+  +  QS    V++    V      G SL+
Sbjct: 58  QKKFSAYDLALMTRQLSVLVAAAIPLEEALRAVSRQSEKAHVQNLLLLVRSKVLEGHSLA 117

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           + + +  R+                 +  G+L   L  LS    +R  M+ KVQ   +  
Sbjct: 118 QGMQQSGRFPD------LYIATVAAGERSGHLDLILDQLSDYTENRFAMQKKVQGAMIYP 171

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
                +   +   V  L+ +  P  +            + VA 
Sbjct: 172 IILMLMSFGI---VMGLMTYVVPEIVKTFDQSKDALPWITVAL 211


>gi|254488585|ref|ZP_05101790.1| general secretion pathway protein F [Roseobacter sp. GAI101]
 gi|214045454|gb|EEB86092.1| general secretion pathway protein F [Roseobacter sp. GAI101]
          Length = 405

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/160 (10%), Positives = 44/160 (27%), Gaps = 7/160 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                    +   + AG+ + DA+  +  Q+++   +     +        L        
Sbjct: 66  RALTVVTRQLATLIGAGVRIEDALKTVADQATNSRVAALMLTLRADV----LDGQGLAPA 121

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                     F        +  G L + + +L+  +  R   +  VQ   +       + 
Sbjct: 122 LDSHPHIFGAFYRASVKAGETSGRLGDVMDHLADFVETRSKNRQTVQLALLYPA---ILA 178

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
                 +  L+ +  P  + V  +       L  +   + 
Sbjct: 179 LVSLGVIVALLVYVVPDIVKVFTSRGAELPFLTRSLISVS 218


>gi|146296450|ref|YP_001180221.1| type II secretion system protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410026|gb|ABP67030.1| type II secretion system protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 303

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 63/183 (34%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQ 59
           + ++   R  KF   F      +   +R    +   +   +  ++   ++ E   +++  
Sbjct: 114 LDYISTSRRFKFELKFGEFTQSVAIMLRGTPNLMSVLQQAMNEETDSKLKMELEMIVQEV 173

Query: 60  HLGLSLSESISRMVRYMPL-QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             G +L +++ +          V  +   I   +  G +LS+   N +R + D+ +    
Sbjct: 174 QSGTTLEQALKKFKERNNFSSVVGTWVDSIVFANLSGASLSDVCMNAARKINDKLSRARL 233

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           ++  +   K+    I  +       + F  P       +   G ++L    + ++     
Sbjct: 234 IKKKTARLKSVMLAIIGIITLTLVFILFFFPEA-KECYSTTGGKIILMFVLSIVIGSTYY 292

Query: 179 MRL 181
           M  
Sbjct: 293 MLK 295


>gi|326383473|ref|ZP_08205160.1| hypothetical protein SCNU_11071 [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326197879|gb|EGD55066.1| hypothetical protein SCNU_11071 [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 265

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 64/192 (33%), Gaps = 18/192 (9%)

Query: 6   KKRTAKFLDDFPN--------ALDIIVRSVRAGLPVSDAVAVIVG-----QSSDPVRSEF 52
           ++R     +   +        AL ++   +  G PV  A                V  E 
Sbjct: 74  RQRRRSCREALADRDSRQLIAALAVMSAELSVGAPVVQACRAAAADLARIDHDGAVGPEL 133

Query: 53  RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112
            R+     LG       +          V   +   +V  + G  + + LA L   L  R
Sbjct: 134 ARMAARAELGGDPGPESATRAGP-----VRRLARSWAVSLEYGLPVGDVLAALREDLVSR 188

Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
           ++  A+ +A     +A+A ++  LP     L          VL+    G +LL V  A  
Sbjct: 189 QDFAARTRAGLAGPRATAVVLAGLPVVGLVLGQAMGAHPARVLLESRIGGVLLVVGTALS 248

Query: 173 LIGIMVMRLMIN 184
           + G++    + +
Sbjct: 249 VAGVVWADRIAD 260


>gi|148556412|ref|YP_001263994.1| type II secretion system protein [Sphingomonas wittichii RW1]
 gi|148501602|gb|ABQ69856.1| type II secretion system protein [Sphingomonas wittichii RW1]
          Length = 297

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 54/147 (36%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           +  L   R      +FP  LD++   + +GL +      I     +++  + +  RR++ 
Sbjct: 134 LHFLKGVRQRAITAEFPFLLDLLQMMLESGLSLDQCFRSIATEENEATPRLAATVRRLVF 193

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+S   ++ R      +      +++       G  L+ AL   +R   +R+   A
Sbjct: 194 DLDRGMSYDAALGRWAERTAVGGAKELASLFQQALLQGTELAPALRTFTREFTERRIAHA 253

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           +     +  +    +I      +  +V
Sbjct: 254 RESIGRISVQMVLVLIACFLPAIFIVV 280


>gi|260550555|ref|ZP_05824765.1| type II secretory pathway [Acinetobacter sp. RUH2624]
 gi|260406470|gb|EEW99952.1| type II secretory pathway [Acinetobacter sp. RUH2624]
          Length = 401

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 54/163 (33%), Gaps = 11/163 (6%)

Query: 9   TAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66
             KF   D       +   V A +P+ +A+  +  QS    V++    V      G SL+
Sbjct: 58  QKKFSAYDLALMTRQLSVLVAAAIPLEEALRAVSRQSEKAHVQNLLLSVRSRVLEGHSLA 117

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           + + +  R+                 +  G+L   L  LS    +R  M+ KVQ   +  
Sbjct: 118 QGMQQSGRFPD------LYIATVAAGERSGHLDLILDQLSDYTENRFAMQKKVQGAMIYP 171

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
                +   +   V  L+ +  P  +            + VA 
Sbjct: 172 IILMLMSFGI---VMGLMTYVVPEIVKTFDQSKDALPWITVAL 211


>gi|282863647|ref|ZP_06272705.1| type II secretion system protein [Streptomyces sp. ACTE]
 gi|282561348|gb|EFB66892.1| type II secretion system protein [Streptomyces sp. ACTE]
          Length = 272

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 40/133 (30%), Gaps = 3/133 (2%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
                 P   D++   + AG    DA   +      PV     R      LG   SE+  
Sbjct: 126 AVTAQLPLVADLLAACLSAGAGPRDAAEAVGESLGGPVGDRLVRTAAEIRLGGEPSEAWG 185

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           R      +   +  +  +      G   ++ ++ ++  +R  +   A  +A       +A
Sbjct: 186 RFGE---IPGAARLARCLERAGATGAPAADPVSRVADEMRAERASAAVARAQRAGVLITA 242

Query: 131 WIIGSLPFCVSTL 143
            +          +
Sbjct: 243 PVGLCFLPAFLAV 255


>gi|220932705|ref|YP_002509613.1| type II secretion system protein [Halothermothrix orenii H 168]
 gi|219994015|gb|ACL70618.1| type II secretion system protein [Halothermothrix orenii H 168]
          Length = 410

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 50/174 (28%), Gaps = 8/174 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISR 71
            D+       +   + AG+ +S+AV VI         +     + +    G   S  + R
Sbjct: 70  QDNLILFTRQLGNMLGAGIQLSEAVRVIGSLLNPGEFKDIVLIIYDLLKEGQEFSHILER 129

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             R       S     +    +  G++      ++  L + + +K  V +  +       
Sbjct: 130 FPRI-----FSSAYINMIRAGEESGSIGVVCRRIAGHLEESRKLKRFVISSLIYPVVLFC 184

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA--AFMLIGIMVMRLMI 183
           +       +   V            +       L +         G+ ++  +I
Sbjct: 185 VSVIAIIVMFVFVLPRFLDIYRYYGHSLPWTTELLLNINRFLSDYGLYLIFFII 238



 Score = 38.2 bits (87), Expect = 0.61,   Method: Composition-based stats.
 Identities = 15/128 (11%), Positives = 42/128 (32%), Gaps = 7/128 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +   + +G+P+  A+ +      ++      +   +    G  LS ++ R        
Sbjct: 281 RNMGIMLESGVPLLKAIDIASSVTGNEIFHQALQEARQAVKKGGHLSGALDRSGM----- 335

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                   +    +  G L+E L +++R   +      +      E     ++   + F 
Sbjct: 336 -FPELFVYMVGVGEETGKLTEMLLDVARNFEEEYRELLQRFMKLFEPLLILFMGLVIGFI 394

Query: 140 VSTLVYFT 147
           V +++   
Sbjct: 395 VISMLLPI 402


>gi|330972856|gb|EGH72922.1| type II secretion system protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 400

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
               +    +   + AG P+  ++ +++ Q      ++   R+ E    G  LS ++   
Sbjct: 62  AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEE 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    S     +    + GG L   L  LS  L   + ++ +V    +      ++
Sbjct: 122 GSQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +  +   ++ L+ +  P ++ +  +   G  +  +    + +G  +
Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGEFL 217


>gi|237733161|ref|ZP_04563642.1| predicted protein [Mollicutes bacterium D7]
 gi|229383705|gb|EEO33796.1| predicted protein [Coprobacillus sp. D7]
          Length = 283

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 60/147 (40%), Gaps = 1/147 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ- 59
           +K  +  +   F +  P+ +  +  ++ AG+ +S A+ +        ++ EF R +    
Sbjct: 130 LKQDLSMKYQIFDNTLPDYISRVSLAMNAGMNLSQAMIIATRALDGDIKKEFVRFLADTE 189

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                +++    + +  P +    F +V+    + G  +SE L   +  + D   +K + 
Sbjct: 190 RNQDDIAKPYINLRQRFPTKSCERFCSVVITGIKNGNKMSEILEKETNYINDETLIKMEE 249

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146
           Q    E  ++A   G +   ++ L+  
Sbjct: 250 QGKKNEIVSTAISTGFIFIPITALLIA 276


>gi|169831154|ref|YP_001717136.1| type II secretion system protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637998|gb|ACA59504.1| type II secretion system protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 433

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 51/164 (31%), Gaps = 9/164 (5%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLS 66
           R      +           + AG+PV  A+ ++  Q+ +  +R     V      G SL+
Sbjct: 88  REKVSARELALFSRQSAALIDAGVPVLRALRILTAQAPNRRLRDTLDEVAAAVERGSSLA 147

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +  R     P        T +    +LGG L+  L  LS         + K++++    
Sbjct: 148 GAFRRHPDVFP-----SVFTSLVEAGELGGQLNLVLERLSVHYEKEHLFREKMRSVLTYP 202

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
                +       ++    F  P    VL        LL     
Sbjct: 203 LIVLAVAVLAVAVLT---TFVLPTLAGVLTETGVPLPLLTEIVI 243



 Score = 42.4 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 45/129 (34%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
                   +++G+P+  A+ V+     +       R IE     +   ESI+ ++    L
Sbjct: 302 FCRTFASLIKSGVPILQALDVLAKTVGNAGM---ARAIEEISANVGQGESIAVLLERSRL 358

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                  T + V  +  G L + L  ++       +      A ++E      + G +  
Sbjct: 359 --FPRMVTQMIVVGEETGALDKLLEKVAVYYEQDVDQTVSRLASALEPVLILAVGGVVGL 416

Query: 139 CVSTLVYFT 147
            + +++   
Sbjct: 417 IIISVLLPL 425


>gi|307545811|ref|YP_003898290.1| general secretion pathway protein F [Halomonas elongata DSM 2581]
 gi|307217835|emb|CBV43105.1| general secretion pathway protein F [Halomonas elongata DSM 2581]
          Length = 400

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/160 (11%), Positives = 41/160 (25%), Gaps = 7/160 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +        +   + AG+P+  A+  +  Q+      E  R +    +            
Sbjct: 60  ERLTLLTRQLATLIDAGIPIGQALEALASQAD----REAARALLLSLVNRVREGYSLADS 115

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G L + L  L+  L   +  + K +   +       + 
Sbjct: 116 LKAHPASFDRLYVALVAAGERAGQLPQVLERLADHLERSQRQRQKAKGALVYPLVLVLVS 175

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             +   VS L+ +  P               L      + 
Sbjct: 176 VGV---VSGLMTYVVPRLAAQFERSDMTLPWLTRGLIALA 212


>gi|311743760|ref|ZP_07717566.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
 gi|311312890|gb|EFQ82801.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
          Length = 303

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 63/157 (40%), Gaps = 6/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   +++R     ++FP   D++  +V AG   + A+  +V ++   +  E  RV+    
Sbjct: 146 LSAEVRRREQAMTEEFPAVADLLALAVAAGESPTAALQRVVARAHGELADELGRVLAEVR 205

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G ++ ++  R+     +  ++ F+  ++V    G  + + L   +  +R+        +
Sbjct: 206 TGSTIVQAFDRLAARTGVTSIARFAEGLAVAVDRGTPVVDVLHAQTADVREAA------R 259

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
              ME      ++  +P   + L       +   L+ 
Sbjct: 260 RHLMETGGRREVLMMVPVVFAILPVTVVFAFYPGLVG 296


>gi|158522859|ref|YP_001530729.1| type II secretion system protein [Desulfococcus oleovorans Hxd3]
 gi|158511685|gb|ABW68652.1| type II secretion system protein [Desulfococcus oleovorans Hxd3]
          Length = 403

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 48/159 (30%), Gaps = 6/159 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
            ++           + AGLP+   + ++   + +   R   + + ++   G +L++++  
Sbjct: 62  EENVIIFARQFSTMIDAGLPIVQCLDILFSQEDNPTFRKILKSIKDSVEGGQTLADAMKP 121

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    + GG L   L  LS  +     +K +V+   M    +  
Sbjct: 122 FPDQ-----FDNLFVNMIAAGEAGGILDVILKRLSAYMEKAAKLKRQVKGAMMYPLITLS 176

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           I   +   +   V             +        +  +
Sbjct: 177 IAVLVVIVILVFVIPVFQEMFADFGKELPAPTQFVIFLS 215



 Score = 44.3 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/130 (7%), Positives = 37/130 (28%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+ + DA+ ++   +      E         +    + +   +      
Sbjct: 271 FTRTMGTMLASGVSILDALDIVARTA-GNKVVENAVFKVRSGISEGRTMADPLL----ES 325

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G L   L  ++    +  +   +    ++E     ++ G +  
Sbjct: 326 GVFPSMVCQMISVGESTGALDAMLEKIADFYEEEVDAAVESLTSAIEPLMMVFMGGLIGG 385

Query: 139 CVSTLVYFTS 148
            V ++     
Sbjct: 386 LVVSMYLPVF 395


>gi|172059566|ref|YP_001807218.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
 gi|171992083|gb|ACB63002.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
          Length = 401

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/164 (10%), Positives = 45/164 (27%), Gaps = 6/164 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            +       +   ++AGLP++ ++ ++   ++ D V      +      G   + +++R 
Sbjct: 62  REVTRFTRQLASLLQAGLPLAPSLEMLARTRTRDGVPRIAAGLAREIVGGQRFAAALARY 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L  ++           K+ A      A    
Sbjct: 122 PSQFG-----TLYRQLIEVGEASGALGTVLTRVAEHRERADAQWRKLCAALAYPVAVIVF 176

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
             ++   +   V  T     +             +A +      
Sbjct: 177 ALAISAALMVWVVPTFRQIFDGFGAALPAPTRALLALSSATSAW 220



 Score = 38.6 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 41/130 (31%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+P++DA A +   +          ++      G  L++++     +  
Sbjct: 271 WCRSLATLLSAGVPLADAFATLERTAGHPVFEQATAQIAARVLRGARLADAMHAAGCFPD 330

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                         ++  G L   LA+++ +   + + +    A   E      +   + 
Sbjct: 331 DVVQP------IAVAEETGALDTMLADIAALCERQLDARLDALAALGEPLIVIVLGALVG 384

Query: 138 FCVSTLVYFT 147
             V  +    
Sbjct: 385 GLVIAMYLPI 394


>gi|325678930|ref|ZP_08158528.1| type II secretion system protein F domain protein [Ruminococcus
           albus 8]
 gi|324109434|gb|EGC03652.1| type II secretion system protein F domain protein [Ruminococcus
           albus 8]
          Length = 398

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 45/141 (31%), Gaps = 6/141 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISR 71
             +       +   + +GL +  A+ ++  +  +      +R V E    G S S ++  
Sbjct: 58  TAELAYCCRQLSAMMSSGLTIVKALDILYKEEENKGAKAVWRDVYEDVQKGESFSGALEA 117

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P      F   +    ++ G+L   +  L     +   +  KV+   +       
Sbjct: 118 KRGCFP-----DFFISMVDAGEISGSLDVTMKRLQEYYANSNKLNNKVKGAMIYPCVLLV 172

Query: 132 IIGSLPFCVSTLVYFTSPGYM 152
           ++  L   +S  +       M
Sbjct: 173 LVIVLVLAMSVFILPIFRSMM 193


>gi|169797376|ref|YP_001715169.1| general secretion pathway protein F [Acinetobacter baumannii AYE]
 gi|213155809|ref|YP_002317854.1| general secretion pathway protein F [Acinetobacter baumannii
           AB0057]
 gi|215484816|ref|YP_002327051.1| general secretion pathway protein F [Acinetobacter baumannii
           AB307-0294]
 gi|301347515|ref|ZP_07228256.1| general secretion pathway protein F [Acinetobacter baumannii AB056]
 gi|301511742|ref|ZP_07236979.1| general secretion pathway protein F [Acinetobacter baumannii AB058]
 gi|301596762|ref|ZP_07241770.1| general secretion pathway protein F [Acinetobacter baumannii AB059]
 gi|332851866|ref|ZP_08433769.1| general secretion pathway protein F [Acinetobacter baumannii
           6013150]
 gi|332867435|ref|ZP_08437595.1| general secretion pathway protein F [Acinetobacter baumannii
           6013113]
 gi|169150303|emb|CAM88200.1| general secretion pathway protein F [Acinetobacter baumannii AYE]
 gi|213054969|gb|ACJ39871.1| general secretion pathway protein F [Acinetobacter baumannii
           AB0057]
 gi|213986479|gb|ACJ56778.1| general secretion pathway protein F [Acinetobacter baumannii
           AB307-0294]
 gi|332729651|gb|EGJ60987.1| general secretion pathway protein F [Acinetobacter baumannii
           6013150]
 gi|332733975|gb|EGJ65119.1| general secretion pathway protein F [Acinetobacter baumannii
           6013113]
          Length = 401

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 54/163 (33%), Gaps = 11/163 (6%)

Query: 9   TAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66
             KF   D       +   V A +P+ +A+  +  QS    V++    V      G SL+
Sbjct: 58  QKKFSAYDLALMTRQLSVLVAAAIPLEEALRAVSRQSEKAHVQNLLLSVRSKVLEGHSLA 117

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           + + +  R+                 +  G+L   L  LS    +R  M+ KVQ   +  
Sbjct: 118 QGMQQSGRFPD------LYIATVAAGERSGHLDLILDQLSDYTENRFAMQKKVQGAMIYP 171

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
                +   +   V  L+ +  P  +            + VA 
Sbjct: 172 IILMLMSFGI---VMGLMTYVVPEIVKTFDQSKDALPWITVAL 211


>gi|324989515|gb|EGC21461.1| type IV pilus assembly protein PilC [Streptococcus sanguinis SK353]
          Length = 408

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 51/174 (29%), Gaps = 10/174 (5%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
               L D       +   + +G+P+++AV ++  Q+         +VI       +    
Sbjct: 57  KKIKLKDISLFCKQMSVMLNSGIPLNNAVDILEQQTDAKNLKASLKVISKGLKEGN---- 112

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                              +    +  G L E L  +S           +++   +    
Sbjct: 113 QLSKSLIEQNGLFPDLLIRMVQAGEKTGKLDEVLERMSEHYNKELKTSRQIRGAMIYPAV 172

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGIMVM 179
            A++  +       L+Y   P +  +         L   + +AA+  +     +
Sbjct: 173 LAFLAVAATLV---LLYVVIPNFSGIFEQSGVALPLPTRIVLAASNFVQSYWYI 223



 Score = 44.3 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+ +A+      +++ V  +  R+         L +           
Sbjct: 270 FASTLATLTSAGIPLVEAIDSAAATTNNAVVIDKLRIANE-----GLQKGERLTGMLTST 324

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G+L   L   S    +      K     +E      +   +  
Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLNKTSDFYEEELEAAIKQLLSLLEPAMIIVMGVIIGG 384

Query: 139 CVSTLVYFTS 148
            V++++    
Sbjct: 385 IVASVMLPMF 394


>gi|227876610|ref|ZP_03994720.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
 gi|269976144|ref|ZP_06183140.1| putative type II secretion system protein [Mobiluncus mulieris
           28-1]
 gi|306817559|ref|ZP_07451302.1| type II secretion system protein [Mobiluncus mulieris ATCC 35239]
 gi|307699933|ref|ZP_07636984.1| type II secretion system F domain protein [Mobiluncus mulieris
           FB024-16]
 gi|227842811|gb|EEJ53010.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
 gi|269935473|gb|EEZ92011.1| putative type II secretion system protein [Mobiluncus mulieris
           28-1]
 gi|304649601|gb|EFM46883.1| type II secretion system protein [Mobiluncus mulieris ATCC 35239]
 gi|307614971|gb|EFN94189.1| type II secretion system F domain protein [Mobiluncus mulieris
           FB024-16]
          Length = 386

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 64/192 (33%), Gaps = 11/192 (5%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
             L+K +  +           +   + AG  ++ A  V + +    +     +       
Sbjct: 50  SRLMKPKLKELDAGM--LCAEVATRLIAGADIASAWEVTLRRLHPDLDFAAAKAFAENPH 107

Query: 62  GLSLSESISRMVRYM---------PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112
                    ++ R               +       +V +++G  L+E L  ++  +  +
Sbjct: 108 ENWRHRFRGQVARNPLATLHHKEATAAALRAMFIATAVSTEVGAPLAEILTRVADGIAAQ 167

Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
               AK  A  +  +A+A ++G LP     +  F     + + ++      +  V A  M
Sbjct: 168 LEAGAKRHAAQVGPRATARLLGVLPLAALVMASFIGVDVLGMALSGGLNTGIFVVGAVLM 227

Query: 173 LIGIMVMRLMIN 184
           ++G +    MI 
Sbjct: 228 VVGNLWSHAMIR 239


>gi|114798264|ref|YP_760568.1| general secretion pathway protein F [Hyphomonas neptunium ATCC
           15444]
 gi|114738438|gb|ABI76563.1| general secretion pathway protein F [Hyphomonas neptunium ATCC
           15444]
          Length = 403

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 52/165 (31%), Gaps = 9/165 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +   V +G+ +  A+    G S    +      V      G +L+E++    R  P
Sbjct: 67  LTRQLAVLVSSGMTIEQALTAAAGDSDASPQRGLLLGVRSQVMEGSTLAEAMRAAPRAFP 126

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G L   L  L+  L     ++  V++  +       +   + 
Sbjct: 127 P-----LFRAVVSSGESSGRLGLVLDQLAHHLERSYRLRTLVRSALIYPAILGIMATLMV 181

Query: 138 FCVSTLVYFTSPGYMNVLIND---PRGHMLLGVAAAFMLIGIMVM 179
             +   V         +L  D   P    ++G++      G+ V+
Sbjct: 182 TALMVWVVPKLVEQFAMLGADELPPLTRFVIGLSGFVRDWGLFVL 226


>gi|302879518|ref|YP_003848082.1| Type II secretion system F domain [Gallionella capsiferriformans
           ES-2]
 gi|302582307|gb|ADL56318.1| Type II secretion system F domain [Gallionella capsiferriformans
           ES-2]
          Length = 400

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 59/168 (35%), Gaps = 6/168 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
             D    L  +   +RAG+P+   ++ +   S    +++    + E    G ++SE+ + 
Sbjct: 57  RRDLIQFLFQLEMLLRAGVPIQAILSDLRETSETPHIKALCANLYEKIDSGSTISEAFAA 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P          +    +  G L   L  +   L+ +  + +K + L         
Sbjct: 117 NPGIFP-----ELVVNLIRAGEGTGQLPYVLQEIVASLKWQDELVSKTRQLLTYPAFVTL 171

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           ++GS+   + T +     G++  +        ++ +  +   +    +
Sbjct: 172 VVGSVVVFLMTYLVPQILGFVANMGGTIPLQTVVLLWVSDKFVRYWWI 219


>gi|296109005|ref|YP_003615954.1| Type II secretion system F domain protein [Methanocaldococcus
           infernus ME]
 gi|295433819|gb|ADG12990.1| Type II secretion system F domain protein [Methanocaldococcus
           infernus ME]
          Length = 299

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 72/159 (45%), Gaps = 4/159 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L + +  K  ++ P AL IIV ++ +G  +++A+  +V  +   V   F RV+       
Sbjct: 74  LYESKMEKLEENLPKALYIIVLALDSGRSINEALHEVVRANIKEVSPVFARVLYLIEKQK 133

Query: 64  -SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S  ++++ +  +   + +     ++    + GGNLSE L  L++ L D +  K ++ ++
Sbjct: 134 LSFEDAMTIVSTFYDSKILRMLGKIMIENRKFGGNLSETLKTLAKTLEDFRLYKRQLMSV 193

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           +  + A  +I+  L       +      Y+ VL     G
Sbjct: 194 TANSLAMGFIMICLVVPGVAALL---ASYLMVLGKTLPG 229


>gi|49084732|gb|AAT51226.1| PA4300 [synthetic construct]
          Length = 304

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 59/147 (40%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           +KH  K R A   D+    + +I     AGL V   + V+       +  +  E    + 
Sbjct: 141 LKHFAKARRALIADEMILFVQLIRILFDAGLTVEQTLRVVCLEGRGITPQLARELDLALT 200

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ L+E +  + R + +  ++    V+    + GG+    L  L ++  DR+    
Sbjct: 201 RADNGIDLAEELEALARRLQVDPLNDCCGVLRQMLRQGGSARSTLLTLKQLFEDRRLTTL 260

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +   + AK S  ++  L   +  ++
Sbjct: 261 QERIGKLSAKMSLVMMVLLFPALLIVL 287


>gi|89892803|ref|YP_516290.1| hypothetical protein DSY0057 [Desulfitobacterium hafniense Y51]
 gi|89332251|dbj|BAE81846.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 309

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 64/176 (36%), Gaps = 2/176 (1%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS-LSE 67
                 +   AL II  +      +  AV   +   + PV S F+  +    L    ++ 
Sbjct: 128 KKDIAAELETALSIITTAYLRNEDILTAVEENLPYLNPPVLSVFKGFVSRVRLVDPNVTA 187

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++  +   +       +   +        +L   L  +   L D + +  +++ +  E +
Sbjct: 188 ALHDVKMRIDNAVFHEWCDALISCQH-DRSLKTTLTPIVSKLSDMRVVNGELENMVFEPR 246

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
               I+  L      L+YF +  + + L++ P G ++L + AA + +    +    
Sbjct: 247 KEFIIMVVLVVGNIPLMYFLNQDWYHTLMHTPLGQIVLTICAAVIFVSTAFVIKFT 302


>gi|33596973|ref|NP_884616.1| hypothetical protein BPP2380 [Bordetella parapertussis 12822]
 gi|33566424|emb|CAE37677.1| putative membrane protein [Bordetella parapertussis]
          Length = 328

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 62/146 (42%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +   I +R      + P  +D++      GL V  ++ V++         +  E +   E
Sbjct: 163 LLRRIARRRECAEAELPLFIDLLRLLQGVGLSVDQSMHVLIQDFRSVMPVLGGELKIAAE 222

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+SR+ +     ++S    +I    + GG + + LA  +  +R+R+ ++ 
Sbjct: 223 QYARGRTREQSLSRLAQGFDNDDLSAICRLIVQVDRHGGAVQDPLARFAERVRERRRLEL 282

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           K +   +  K +  ++ +L   +  +
Sbjct: 283 KARVARLTVKMTGVMVVTLLPALLII 308


>gi|152985681|ref|YP_001350164.1| putative type II secretion system protein [Pseudomonas aeruginosa
           PA7]
 gi|150960839|gb|ABR82864.1| general secretion pathway protein F [Pseudomonas aeruginosa PA7]
          Length = 404

 Score = 54.4 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/166 (11%), Positives = 56/166 (33%), Gaps = 6/166 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D   A   +   + A LP+  A++  + Q+    +      V      G+ L+++++   
Sbjct: 66  DLAWATRQLASLLAASLPLEAALSATLDQAERKHIAQTLGAVRSDVRGGMRLADALAARP 125

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R     +       +    +  G+L++ +  L+  + +R  ++ K+    +       + 
Sbjct: 126 R-----DFPEIYRALVAAGEESGDLAQVMERLADYIEERNALRGKILTAFIYPAVVGVVS 180

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             +   +   V        +    D      + + A+  +     +
Sbjct: 181 IGIVIFLLGYVVPQVVSAFSQARQDLPALTRVMLQASDFVRAWGWL 226



 Score = 37.4 bits (85), Expect = 0.95,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 38/130 (29%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       ++  +             G+SL+ ++        
Sbjct: 273 FASTLAILGSAGVPLLRALDAARQTLANDCLAWAVEEATAQVREGVSLASALRA------ 326

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            Q      T +    +  G L   L   ++ L      +A      +E      + G + 
Sbjct: 327 RQVFPPILTHLIASGEKTGALPPMLDRAAQTLSRDIERRAMGMTALLEPLMIVVMGGVVL 386

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 387 MIVMAVLMPI 396


>gi|257069182|ref|YP_003155437.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810]
 gi|256560000|gb|ACU85847.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810]
          Length = 314

 Score = 54.4 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 61/146 (41%), Gaps = 2/146 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           IK+R  +   +FP   D++  +V AG     A+  +   S   +  EF   +     G S
Sbjct: 163 IKRRATRMAREFPTVADLLALAVAAGESPIAAMERVARTSHGALPDEFAATVADIRAGTS 222

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +S++++ +    PL  +  F   +S+  + G  L+E L   ++  R+    K ++   + 
Sbjct: 223 VSQALASLGTRTPLDSLGRFGEGVSIAIERGTPLAEVLRAQAQDAREES--KRELMETAG 280

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPG 150
           + +    +          +V+   PG
Sbjct: 281 QREILMLVPVVFFVLPLVIVFAIFPG 306


>gi|256810975|ref|YP_003128344.1| Type II secretion system F domain protein [Methanocaldococcus
           fervens AG86]
 gi|256794175|gb|ACV24844.1| Type II secretion system F domain protein [Methanocaldococcus
           fervens AG86]
          Length = 299

 Score = 54.4 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 69/145 (47%), Gaps = 1/145 (0%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
             + +++     ++ P AL I++ S+ +G  +++A+  +V  +   V   FR+VI     
Sbjct: 73  SMMYEQKIETLENNIPQALYIMILSLESGRSLNEALEEVVKSNIKEVSDIFRKVIYLIEH 132

Query: 62  G-LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
             +S  E+I+ +      + +   + ++    + GG+LS++L  L++ L D K+ K ++ 
Sbjct: 133 QKISFEEAITVVSTLYGSRVLMMLARIMIENRKYGGDLSDSLRILAKTLEDFKSYKRQLL 192

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145
           +++    A  +II          + 
Sbjct: 193 SVTASGLAVGFIILCGVIPAVAGLL 217


>gi|150021619|ref|YP_001306973.1| type II secretion system protein [Thermosipho melanesiensis BI429]
 gi|149794140|gb|ABR31588.1| type II secretion system protein [Thermosipho melanesiensis BI429]
          Length = 397

 Score = 54.4 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 11/157 (7%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQHLGLSLSESISR 71
            D       +   ++AGL + +A+ ++  Q   S   R     V+    +G SL+++  +
Sbjct: 59  KDIVFFTRQLETMIKAGLRLREAIHILSNQEIFSKRFRKVLLNVVNELDVGTSLTDAFKK 118

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    + GG L E L  LS    +    + +V++  +      +
Sbjct: 119 QG------VFDNVFINMLKAGEEGGVLEETLEKLSNYYENLNRTQQQVKSAMVYPI---F 169

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168
           I+      V  +  F  P    V  N P   ++  + 
Sbjct: 170 ILSFAVIVVLVISLFILPKLFMVFGNIPTSGLISTLV 206


>gi|313126822|ref|YP_004037092.1| archaeal flagella assembly protein j [Halogeometricum borinquense
           DSM 11551]
 gi|312293187|gb|ADQ67647.1| archaeal flagella assembly protein J [Halogeometricum borinquense
           DSM 11551]
          Length = 682

 Score = 54.4 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 57/178 (32%), Gaps = 7/178 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQHL 61
               R  +     P+A+  +      GL   + +  +     +   V  EF+ +++    
Sbjct: 143 KASSRKREINMLLPDAISFMYALSVGGLNQLEILEAMGRAEDTYGEVAREFQSIVQETEY 202

Query: 62  GL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                  +I       P  E+S F T +      GGN+ + L +           + ++ 
Sbjct: 203 FGTDYRNAIRDQAMVTPSDELSQFLTDMLSIVNSGGNMEQFLDDKKEKHLRTAKQEQEMT 262

Query: 121 ALSMEAKASAWII----GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
             ++E     ++       L   +  ++        ++L     G + L      +L+
Sbjct: 263 LETLELFGEMYMTLSLFPLLLIIILVIMSMLGQAQQSLLYATVYGLIPLTGVGFLVLV 320


>gi|149193938|ref|ZP_01871036.1| msha biogenesis protein mshg [Caminibacter mediatlanticus TB-2]
 gi|149135891|gb|EDM24369.1| msha biogenesis protein mshg [Caminibacter mediatlanticus TB-2]
          Length = 415

 Score = 54.4 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 8/164 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMP 77
           AL  +   ++AG+ + DA+  I   S+DP+  E      E    G SLS+  +    Y+ 
Sbjct: 77  ALRQLSVLIKAGISLKDALEDIGENSADPLIKEVFLNAAEAIDSGKSLSDVFAEYEEYLG 136

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
              +      +    +  G+L+ A+  L++I  +    + K+         +   I    
Sbjct: 137 GLSL-----AMVRLGEKTGDLAMAIDYLAQIYENMYENRRKMIKALRYPIITLIAIVVAF 191

Query: 138 FCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVM 179
             +  LV                    +LLG+       G++V+
Sbjct: 192 VFLILLVVPKFKAIFEQFHAQLPLPTRILLGIEYVLTNYGLLVL 235


>gi|309810893|ref|ZP_07704694.1| conserved hypothetical protein [Dermacoccus sp. Ellin185]
 gi|308435199|gb|EFP59030.1| conserved hypothetical protein [Dermacoccus sp. Ellin185]
          Length = 232

 Score = 54.4 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 64/172 (37%), Gaps = 7/172 (4%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVI-----VGQSSDPVRSE-FRRVIETQHLGLSLSESISR 71
             +D +V  +RAG  V+ A+ +         +     S  ++R+         + +    
Sbjct: 49  QLVDALVTVLRAGSAVTPALIMALDGVGATSAGGSATSAGWQRLRLEAVRDGDVVQVWRD 108

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           + R          +    + ++ G  L++A+   +R +R R++ +A V   +  AKAS  
Sbjct: 109 LGRLWRSAAFEEVAAAWQLSARHGCPLADAMEGAARSVRARRSHRACVDGATAGAKASTS 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           ++  LP     L        +    +   G + L    A M +G    R M 
Sbjct: 169 VLLGLPVLGVGLGMLLGVDMLG-CYSGFSGLVTLWPGIALMFVGARWSRRMT 219


>gi|269101773|ref|ZP_06154470.1| type 4 fimbrial assembly protein PilC [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161671|gb|EEZ40167.1| type 4 fimbrial assembly protein PilC [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 408

 Score = 54.4 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/169 (11%), Positives = 43/169 (25%), Gaps = 4/169 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R      D       +   + +G+P+  A+ ++             R + TQ      + 
Sbjct: 62  RNQMKSSDVTAITRQLATMIESGVPIVQALKLMASS----HHKAEVRAVLTQVNTQVEAG 117

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +               F   +    +  G L +    L+      + M+ KV    +   
Sbjct: 118 ASLSKALKSSSPLFDNFYCDLVATGEETGYLGQVFVRLATYREKSEAMRKKVIKAMIYPS 177

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
                  S+   +   V             +        + A+  LI  
Sbjct: 178 MVMLTAISVTILMLVFVIPQFAAIFGSFGAELPWFTRQVLKASDFLINY 226


>gi|269796609|ref|YP_003316064.1| hypothetical protein Sked_33350 [Sanguibacter keddieii DSM 10542]
 gi|269098794|gb|ACZ23230.1| hypothetical protein Sked_33350 [Sanguibacter keddieii DSM 10542]
          Length = 239

 Score = 54.4 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/165 (11%), Positives = 49/165 (29%), Gaps = 16/165 (9%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            +  +   VR+G+P   A A +              ++                      
Sbjct: 81  VITQVAGLVRSGMPPDRAWAGVGVTVRPDGIPTPADLLH----------------LTSDA 124

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
            +         +  Q+G  ++  L ++   L       A+        +++A ++  LP 
Sbjct: 125 SQARAVVAACRLAQQVGAPIAPVLDSIVATLVAAAESAAERDTALASPRSTARLLLWLPA 184

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             + +      G + +L+      +     A  + +G    R ++
Sbjct: 185 AGAVVATVLGAGPVQLLLGGGPAVLAPVTGALLLAVGRWWTRRLV 229


>gi|222055731|ref|YP_002538093.1| type II secretion system protein [Geobacter sp. FRC-32]
 gi|221565020|gb|ACM20992.1| type II secretion system protein [Geobacter sp. FRC-32]
          Length = 402

 Score = 54.4 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 61/190 (32%), Gaps = 24/190 (12%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66
           R              ++  ++AGLP+  A+  I+ +     +      V E    G +LS
Sbjct: 57  RRKVDNKALLTFNQELLVLIKAGLPIIQALDTILERVEKGRLPEILNDVREDVKGGAALS 116

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +  +  +  P               +  G+L + ++     L+  +  K KV +  +  
Sbjct: 117 TAFQKHPKVFPH-----LYIASVQAGERTGDLPQTISRYIAFLKKSEGFKKKVISALIYP 171

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---------------LGVAAAF 171
                I+      V+ L+ +  P +  V  +      L                 VA   
Sbjct: 172 G---IILTVAFLAVTMLLVYVVPTFSQVYADSKSSLPLPTQMLIGFTSVLKRYFLVAVGL 228

Query: 172 MLIGIMVMRL 181
           ++I   ++R 
Sbjct: 229 IIISAFLLRK 238


>gi|291286276|ref|YP_003503092.1| Type II secretion system F domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883436|gb|ADD67136.1| Type II secretion system F domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 402

 Score = 54.4 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 64/179 (35%), Gaps = 6/179 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66
           R      D    ++ +  +VR+GLP+S A++ +   +  + ++S    +    H G++LS
Sbjct: 55  RQKINPQDIVELIENLHLTVRSGLPISSALSDLAKDADNNHLQSVLENISNRVHAGMTLS 114

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++SR          S  +  +    +  G L   L + +  ++   ++  K ++  +  
Sbjct: 115 KALSR-----HSGIFSDITVNLVRIGEETGKLDNTLKDAAEHMKKMNDLTTKTKSALIYP 169

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             +   +          V             D      L +  +       +   +I+F
Sbjct: 170 SFALVGMILTMVFWLVAVMPKMISAFKSFQIDLPPATKLIMGMSGFFQSYFIETAIISF 228


>gi|256827715|ref|YP_003151674.1| Flp pilus assembly protein TadC [Cryptobacterium curtum DSM 15641]
 gi|256583858|gb|ACU94992.1| Flp pilus assembly protein TadC [Cryptobacterium curtum DSM 15641]
          Length = 306

 Score = 54.4 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 44/139 (31%), Gaps = 1/139 (0%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG-LSLS 66
           R  +       AL I+   +R+GL    A+          + SE          G  + +
Sbjct: 157 RKKQMERHLSEALSILCLGLRSGLSFDRALEKYCASFPTMLASELSGAHMAWMTGLTTRT 216

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++  +        +      I    + G  L++AL  L+   R  +      + +    
Sbjct: 217 EALHAVASKYDSPLIRRVMDSIVRSMRFGAPLADALDELAAEARLARKALLDEEVMKAPV 276

Query: 127 KASAWIIGSLPFCVSTLVY 145
           K    +   +   +  +V 
Sbjct: 277 KMMIPVGTLILPSMLLMVL 295


>gi|184156701|ref|YP_001845040.1| Type II secretory pathway, component PulF [Acinetobacter baumannii
           ACICU]
 gi|239500897|ref|ZP_04660207.1| Type II secretory pathway, component PulF [Acinetobacter baumannii
           AB900]
 gi|260556268|ref|ZP_05828487.1| general secretion pathway protein F [Acinetobacter baumannii ATCC
           19606]
 gi|332873110|ref|ZP_08441067.1| general secretion pathway protein F [Acinetobacter baumannii
           6014059]
 gi|183208295|gb|ACC55693.1| Type II secretory pathway, component PulF [Acinetobacter baumannii
           ACICU]
 gi|193076208|gb|ABO10829.2| general secretion pathway protein F [Acinetobacter baumannii ATCC
           17978]
 gi|260410323|gb|EEX03622.1| general secretion pathway protein F [Acinetobacter baumannii ATCC
           19606]
 gi|322506588|gb|ADX02042.1| PulF [Acinetobacter baumannii 1656-2]
 gi|323516467|gb|ADX90848.1| Type II secretory pathway, component PulF [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332738622|gb|EGJ69492.1| general secretion pathway protein F [Acinetobacter baumannii
           6014059]
          Length = 401

 Score = 54.4 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 54/163 (33%), Gaps = 11/163 (6%)

Query: 9   TAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66
             KF   D       +   V A +P+ +A+  +  QS    V++    V      G SL+
Sbjct: 58  QKKFSAYDLALMTRQLSVLVAAAIPLEEALRAVSRQSEKAHVQNLLLSVRSKVLEGHSLA 117

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           + + +  R+                 +  G+L   L  LS    +R  M+ KVQ   +  
Sbjct: 118 QGMQQSGRFPD------LYIATVAAGERSGHLDLILDQLSDYTENRFAMQKKVQGAMIYP 171

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
                +   +   V  L+ +  P  +            + VA 
Sbjct: 172 IILMLMSFGI---VMGLMTYVVPEIVKTFDQSKDALPWITVAL 211


>gi|291518345|emb|CBK73566.1| Type II secretory pathway, component PulF [Butyrivibrio
           fibrisolvens 16/4]
          Length = 350

 Score = 54.4 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/184 (10%), Positives = 57/184 (30%), Gaps = 7/184 (3%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K R     ++     D +   + +G+     +A+++ +S      E         +   +
Sbjct: 4   KSRKKLTSEELYAFSDEMGMMISSGVSAIQGLAMMIDESEGGEEKELL-----VEMEKVV 58

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ++ S        +    +   ++   +  G +   L NL+        + + +++    
Sbjct: 59  GQTGSLSKAIEDAEVFPDYFVEMAKMGEQTGKMDSVLVNLAAHYSREMAISSAIRSAVTY 118

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML--LGVAAAFMLIGIMVMRLMI 183
                 ++  +   + T +          L     G     L +       G++ + L+I
Sbjct: 119 PLMMVAMMLVIIIVLVTEIMPVFDRVFKQLGGTMDGLSAGFLTIGKFLKSNGVIFLILLI 178

Query: 184 NFDV 187
              V
Sbjct: 179 AIVV 182


>gi|326424177|ref|NP_762076.2| type II/IV secretion system protein TadC [Vibrio vulnificus CMCP6]
 gi|319999560|gb|AAO07066.2| Type II/IV secretion system protein TadC, associated with Flp pilus
           assembly [Vibrio vulnificus CMCP6]
          Length = 292

 Score = 54.4 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 49/137 (35%), Gaps = 2/137 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIET 58
           +       T       P  LD++   V  G+ +   +  +  +    D   +    V   
Sbjct: 135 ISSRANSITRHISSRLPFLLDLMNVCVHTGMTIEATLEYLAKELQTVDKYLAFTVNVTVQ 194

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +   + +++++      +P  E   F   +    Q G ++ + L  L+  +R    M+ +
Sbjct: 195 RSKVIGINKALEEFYEMVPSSEAQSFVMTLIQSLQFGSSVGQVLGTLATDIRQINMMELE 254

Query: 119 VQALSMEAKASAWIIGS 135
            +   + AK S  +I  
Sbjct: 255 EKIGKLGAKMSIPMIVF 271


>gi|254499404|ref|ZP_05112070.1| type IV pilus assembly protein PilC [Legionella drancourtii LLAP12]
 gi|254351383|gb|EET10252.1| type IV pilus assembly protein PilC [Legionella drancourtii LLAP12]
          Length = 409

 Score = 54.4 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/173 (11%), Positives = 52/173 (30%), Gaps = 6/173 (3%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLS 64
           KK       D       +   + +G+P+  +  ++   QS+  ++     +      GL+
Sbjct: 62  KKNKRITSGDITIFSRQLATMIESGIPLVQSFDIVAKGQSNKRIKDLIEDIKHDVETGLT 121

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L+E++ +          +     +    +  G+L   L  ++      + +K K++    
Sbjct: 122 LAETLQKRPA-----YFNELFCNLVDAGEKSGSLDIMLNKIATYKEKIETIKKKIKKALT 176

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
              A   +   +   +   V             D      + V  +       
Sbjct: 177 YPMAVIIVAFIVTAGLLIFVVPQFEALFKGFGADLPAMTKVVVHMSKFFQSYW 229



 Score = 41.3 bits (95), Expect = 0.057,   Method: Composition-based stats.
 Identities = 15/136 (11%), Positives = 44/136 (32%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRM 72
                    +  +  AGLP+ +A+  + G + + +      R+ E   +G  +++++   
Sbjct: 274 AAIARFARTLSITFAAGLPLVEALKSVAGATGNIIFSKATERIREDVSIGQQMNKAMEN- 332

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                        T +    +  G L + L  ++    +  +      +  +E    + +
Sbjct: 333 -----THLFPNMVTQMVAIGEESGALEKMLGKVADFYEEDVDNSVDSLSSLLEPIIMSIL 387

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V  +     
Sbjct: 388 GILVGGLVVAMYLPIF 403


>gi|224373171|ref|YP_002607543.1| msha biogenesis protein mshg [Nautilia profundicola AmH]
 gi|223589457|gb|ACM93193.1| msha biogenesis protein mshg [Nautilia profundicola AmH]
          Length = 414

 Score = 54.4 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 61/163 (37%), Gaps = 8/163 (4%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPL 78
           +  +   ++AG+ + DA+  I   + D +  E F +  E    G SLS++ +    Y+  
Sbjct: 78  IRQLAVLIKAGISLKDALEDIANNTKDALIKEVFLKAAEAIDSGKSLSDTFAEYEEYLGG 137

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
             +      +    +  G+L  AL +L++I  +    + K+         +   I +   
Sbjct: 138 ISL-----AMVRLGEQTGDLVMALESLAQIYENMYENRRKMVKALRYPVITLIAIAAAFT 192

Query: 139 CVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVM 179
            +  +V          L  +      +LL +       G +V+
Sbjct: 193 FLILVVVPKFKAMFEQLHAELPLPTRILLLIEKILSQYGFLVL 235



 Score = 36.3 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 43/129 (33%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L  +   +++G+P+ DA+ +  G   + V        + + +   +++  S        
Sbjct: 281 FLMTMASLLKSGIPLVDALKISEGIIENEVLK-----NKIKEIIKGINQGRSFAEMVAEQ 335

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
             V+F +  +    +  G L   L + +    DR          S+E      I G +  
Sbjct: 336 NLVNFVALRMISAGEDSGELDSMLESAAGYYEDRFQDIIDNMQASIEPIMLTVIGGLVLL 395

Query: 139 CVSTLVYFT 147
               +    
Sbjct: 396 IALGIFLPM 404


>gi|289675688|ref|ZP_06496578.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           FF5]
          Length = 252

 Score = 54.4 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 68/157 (43%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  + ++R  + + +    + ++     +G+ V  A+ V+  +       +  E R V+ 
Sbjct: 92  LATVARRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLM 151

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL L E + +    + + E+S    +++     GG   ++L  L +++ DR+  + 
Sbjct: 152 RVDSGLELGEELRKTAALLDVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 211

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +     + AK S  ++  L   +  ++    PG+M +
Sbjct: 212 QEYISKLSAKMSVVMMVFLFPALLIVL--AGPGFMAI 246


>gi|4680733|gb|AAD27751.1| XcmS [Pseudomonas putida GB-1]
          Length = 395

 Score = 54.4 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 66/179 (36%), Gaps = 13/179 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           ++ +  +R A F  D       +   + AGLP+ DA+  +  ++     R     ++   
Sbjct: 47  LRGMAWRREAAF--DLVLFSQELSTLLNAGLPLIDALESLAEKAPSPATRKVLAELVRQL 104

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           + G SLS+++ +  R  P          +   S+  G L +ALA      +    ++ K+
Sbjct: 105 YEGRSLSQALGQQPRVFPP-----LYVALVQSSERTGALGDALARYISYRQRLDLVRQKL 159

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
              S+       + G +   +   V          +     G  L  ++   M IG+ +
Sbjct: 160 VGASVYPLLLLLVGGGVVLFLLGYVVPRFSQVFEGM-----GTELPWLSRVLMQIGLFL 213


>gi|15599496|ref|NP_252990.1| TadC [Pseudomonas aeruginosa PAO1]
 gi|107100116|ref|ZP_01364034.1| hypothetical protein PaerPA_01001137 [Pseudomonas aeruginosa PACS2]
 gi|116052334|ref|YP_792645.1| hypothetical protein PA14_55860 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218893392|ref|YP_002442261.1| TadC [Pseudomonas aeruginosa LESB58]
 gi|254239030|ref|ZP_04932353.1| hypothetical protein PACG_05207 [Pseudomonas aeruginosa C3719]
 gi|254244889|ref|ZP_04938211.1| hypothetical protein PA2G_05762 [Pseudomonas aeruginosa 2192]
 gi|9950522|gb|AAG07688.1|AE004846_5 TadC [Pseudomonas aeruginosa PAO1]
 gi|115587555|gb|ABJ13570.1| putative pilus assembly protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126170961|gb|EAZ56472.1| hypothetical protein PACG_05207 [Pseudomonas aeruginosa C3719]
 gi|126198267|gb|EAZ62330.1| hypothetical protein PA2G_05762 [Pseudomonas aeruginosa 2192]
 gi|218773620|emb|CAW29434.1| TadC [Pseudomonas aeruginosa LESB58]
          Length = 303

 Score = 54.4 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 59/147 (40%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           +KH  K R A   D+    + +I     AGL V   + V+       +  +  E    + 
Sbjct: 141 LKHFAKARRALIADEMILFVQLIRILFDAGLTVEQTLRVVCLEGRGITPQLARELDLALT 200

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ L+E +  + R + +  ++    V+    + GG+    L  L ++  DR+    
Sbjct: 201 RADNGIDLAEELEALARRLQVDPLNDCCGVLRQMLRQGGSARSTLLTLKQLFEDRRLTTL 260

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +   + AK S  ++  L   +  ++
Sbjct: 261 QERIGKLSAKMSLVMMVLLFPALLIVL 287


>gi|295837158|ref|ZP_06824091.1| type II secretion system protein [Streptomyces sp. SPB74]
 gi|197699510|gb|EDY46443.1| type II secretion system protein [Streptomyces sp. SPB74]
          Length = 312

 Score = 54.4 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 63/156 (40%), Gaps = 4/156 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   + +           LD++  S+  G  + +A+      S        R  +    
Sbjct: 158 IRRDAQDKRRDLRRVIGAYLDLVAMSLAGGRGLPEALLAAAEVSDGWASRRIRDALHDAR 217

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           +   +   ++ R+   + ++E+   S+ +++ +  G  + E+LA+ +  +R R+  + + 
Sbjct: 218 ITGHTQWYALGRLGEELGIEELKELSSSLALVADDGAKVRESLASRAETMRHRELAEIE- 276

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
              S   K+ + +I  L  C   LV+   P  M V 
Sbjct: 277 --GSAGEKSQSMLIAQLLLCAGFLVFLIFPAAMRVF 310


>gi|296390999|ref|ZP_06880474.1| TadC [Pseudomonas aeruginosa PAb1]
 gi|313106819|ref|ZP_07793031.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016]
 gi|310879533|gb|EFQ38127.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016]
          Length = 303

 Score = 54.4 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 59/147 (40%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           +KH  K R A   D+    + +I     AGL V   + V+       +  +  E    + 
Sbjct: 141 LKHFAKARRALIADEMILFVQLIRILFDAGLTVEQTLRVVCLEGRGITPQLARELDLALT 200

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ L+E +  + R + +  ++    V+    + GG+    L  L ++  DR+    
Sbjct: 201 RADNGIDLAEELDALARRLQVDPLNDCCGVLRQMLRQGGSARSTLLTLKQLFEDRRLTTL 260

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +   + AK S  ++  L   +  ++
Sbjct: 261 QERIGKLSAKMSLVMMVLLFPALLIVL 287


>gi|302184976|ref|ZP_07261649.1| general secretion pathway protein F [Pseudomonas syringae pv.
           syringae 642]
          Length = 400

 Score = 54.4 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
               +    +   + AG P+  ++ +++ Q      ++   R+ E    G  LS ++   
Sbjct: 62  AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEE 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    S     +    + GG L   L  LS  L   + ++ +V    +      ++
Sbjct: 122 GSQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +  +   ++ L+ +  P ++ +  +   G  +  +    + +G  +
Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGEFL 217


>gi|293610167|ref|ZP_06692468.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827399|gb|EFF85763.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325124342|gb|ADY83865.1| general type II secretion pathway protein F [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 401

 Score = 54.4 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 11/163 (6%)

Query: 9   TAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLS 66
             KF   D       +   V A +P+ +A+  +  QS    V++    V      G SL+
Sbjct: 58  QKKFSAYDLALMTRQLSVLVAAAIPLEEALRAVSRQSEKTHVQNLLLSVRSRVLEGHSLA 117

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           + + +  R+                 +  G+L   L  LS    +R  M+ KVQ   +  
Sbjct: 118 QGMQQSGRFPD------LYIATVAAGERSGHLDLILDQLSDYTENRFAMQKKVQGAMIYP 171

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
                +   +   V  L+ +  P  +     +      + VA 
Sbjct: 172 IILMLMSFGI---VMGLMTYVVPEIVKTFDQNKDALPWITVAL 211


>gi|255319682|ref|ZP_05360890.1| general secretion pathway protein F [Acinetobacter radioresistens
           SK82]
 gi|262380035|ref|ZP_06073190.1| general secretion pathway protein F [Acinetobacter radioresistens
           SH164]
 gi|255303211|gb|EET82420.1| general secretion pathway protein F [Acinetobacter radioresistens
           SK82]
 gi|262298229|gb|EEY86143.1| general secretion pathway protein F [Acinetobacter radioresistens
           SH164]
          Length = 401

 Score = 54.4 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 65/192 (33%), Gaps = 23/192 (11%)

Query: 8   RTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSL 65
           R       D       +   V A +P+ +A+  +  QS    V++    V      G SL
Sbjct: 57  RKKGLNAYDLALMTRQLSVLVAAAIPLEEAIRAVGKQSEKVHVQNLLMSVRSKVLEGHSL 116

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           +++I +  R+                 +  G+L   L  L+    +R  M+ K+Q   + 
Sbjct: 117 AQAIQQSGRFPD------LYIATIAAGERSGHLDLILDQLADYTENRFAMQKKIQGAMVY 170

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA------------AFML 173
                 +  ++   V  L+ +  P  +       +    + V                ++
Sbjct: 171 PIILMLMSFAI---VMGLMTYVVPDIVKTFDQSKQALPAITVILMKTSDFIRQAWPFLLV 227

Query: 174 IGIMVMRLMINF 185
           I ++ + L+I F
Sbjct: 228 ISVVGIMLLIRF 239



 Score = 34.7 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 36/130 (27%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +    R+G+P+ DA+ +    S++ V  +   +   +        +      Y P 
Sbjct: 271 FASTLSILTRSGVPLVDALKIGAAVSNNWVIRDSVNLAAEKVTEGGNLATQLERAGYFPP 330

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G L   L   S +               +E      + G +  
Sbjct: 331 -----MMVQMIRSGEASGELDRMLERASTMQDREVATFISTLLALLEPLMLVVMAGIVLV 385

Query: 139 CVSTLVYFTS 148
            V  ++    
Sbjct: 386 IVIAVMLPIV 395


>gi|221197785|ref|ZP_03570831.1| type II secretion system protein [Burkholderia multivorans CGD2M]
 gi|221204657|ref|ZP_03577674.1| type II secretion system protein [Burkholderia multivorans CGD2]
 gi|221213135|ref|ZP_03586111.1| type II secretion system protein [Burkholderia multivorans CGD1]
 gi|221167348|gb|EED99818.1| type II secretion system protein [Burkholderia multivorans CGD1]
 gi|221175514|gb|EEE07944.1| type II secretion system protein [Burkholderia multivorans CGD2]
 gi|221181717|gb|EEE14118.1| type II secretion system protein [Burkholderia multivorans CGD2M]
          Length = 330

 Score = 54.4 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 56/145 (38%), Gaps = 5/145 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLSESIS 70
           ++ P  +D++      GL +  ++ V+          + SE          G +  +S+ 
Sbjct: 181 NELPLLVDMLRLLQGVGLSLDQSLQVVTNDFRGMLPVLSSEVGIAQRQFAAGRTREQSLQ 240

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           R+      +++     ++    + GG + E L      LR+ +    + +   +  K + 
Sbjct: 241 RLSSGFDNEDLRAVVRLMIQVDKHGGAVQEPLKQFGDRLRETRRALLRERIGRLTVKMTG 300

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155
            ++ +L   +  L+    PG + V+
Sbjct: 301 VMVLTLLPAL--LIVTAGPGMLAVM 323


>gi|330875838|gb|EGH09987.1| general secretion pathway protein F [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 400

 Score = 54.0 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
               +    +   + AG P+  ++ +++ Q      R+   R+ E    G  LS ++   
Sbjct: 62  AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGKPLSVALEEE 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    S     +    + GG L   L  LS  L   + ++ +V    +      ++
Sbjct: 122 GSQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +  +   ++ L+ +  P ++ +  +   G  +  +    + +G  +
Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILDLGQFL 217


>gi|325109734|ref|YP_004270802.1| type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324970002|gb|ADY60780.1| Type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 402

 Score = 54.0 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 10/174 (5%), Positives = 51/174 (29%), Gaps = 6/174 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                    +   +++G+P+  ++ ++          +  +++           +     
Sbjct: 62  RHLSVFYVQLADLLQSGVPLLRSLELL----EGKTPHQTLKLVLEDVRAQVADGNRLAEA 117

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +     +  +    + G  + + L  ++     ++ +K++V    +       I 
Sbjct: 118 MKRHERVFGDLAVSMVRAGEEGSFMEDVLKRIASFTEHQEELKSRVIGSMVYPFFLLSIG 177

Query: 134 GSLPFCVSTLVYFTSPGYMNVLI--NDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             +   + T            +          +  ++ + +L   + + ++I  
Sbjct: 178 TVVVAAMMTFFVPKFEPIFEGMAGRGSLPWATVALMSLSDVLQNYLWIVILILI 231



 Score = 40.1 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 42/133 (31%), Gaps = 5/133 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                  I+   ++ G+P+  ++ +    + + V S             SLS   +    
Sbjct: 268 AIARFCRILGTLLKNGVPILQSLRIAKDATGNRVLS-----RAIGQAAESLSAGEALANP 322

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                +       +    +   NL + L N++  +  +   + ++    +E     ++  
Sbjct: 323 LGASGQFPDEVVEMIAVGEEANNLEQVLINVADNMERQTERQLELFVRMLEPILLTFMAA 382

Query: 135 SLPFCVSTLVYFT 147
              F V  L+   
Sbjct: 383 ITLFVVVALMLPI 395


>gi|291613153|ref|YP_003523310.1| type II secretion system F domain protein [Sideroxydans
           lithotrophicus ES-1]
 gi|291583265|gb|ADE10923.1| Type II secretion system F domain protein [Sideroxydans
           lithotrophicus ES-1]
          Length = 400

 Score = 54.0 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 65/170 (38%), Gaps = 6/170 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73
           D       + + VRAG+P+ + +  +     +    E    ++E+   G  LS++++   
Sbjct: 60  DLITFFFNLEQLVRAGVPLLECLGDLRDTMEEATFREIIASMVESIESGKKLSQAMAEHP 119

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                      +  ++   +  G L E  A+L+  L+ +  M ++ + + +       ++
Sbjct: 120 NA-----FDKITVSLTRAGEDSGRLVEVFAHLTESLKWQDEMASQTKTMMIYPAFVGTVV 174

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            ++ F +   +      ++  +  D      + +A +   +    + L+ 
Sbjct: 175 LAITFFLMIYLVPQLVSFIKGMGQDIPIQTRMLLATSSFFVHYWYVLLLT 224


>gi|160895357|ref|ZP_02076128.1| hypothetical protein CLOL250_02916 [Clostridium sp. L2-50]
 gi|156863050|gb|EDO56481.1| hypothetical protein CLOL250_02916 [Clostridium sp. L2-50]
          Length = 402

 Score = 54.0 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 60/181 (33%), Gaps = 8/181 (4%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLG 62
           LIKK+      D           ++AG+ +  A+ ++  Q  +P ++            G
Sbjct: 53  LIKKKVK--SRDLGVFCKQFSAVIKAGVTIISALELMGDQIENPTLKRAVMDAKTYVEKG 110

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            +L++++       P          +    +L GNL   L  L         + +K++  
Sbjct: 111 GTLADALRVNSDVFPP-----IMINMVAAGELSGNLEVCLDRLVEHFEKDNALSSKIKGA 165

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
            +       ++  +   V   V          +         + VAA+  +I    + ++
Sbjct: 166 MVYPIVVFIVMIIVVIVVMIAVIPNFTSMFEDMGTKLPLATRMMVAASNFIIHKWYILII 225

Query: 183 I 183
           +
Sbjct: 226 V 226



 Score = 39.7 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/139 (9%), Positives = 48/139 (34%), Gaps = 10/139 (7%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+ + DAV  +     + +  +             +++ I        +
Sbjct: 269 FARTMSTLMASGISMIDAVEQVAKMMDNKIIRDGL-----MDAKTQVAKGIPLSKPLKDM 323

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           + +    + ++   +  G++ E L+ ++    +  +        +ME      +I  +  
Sbjct: 324 EVLPPMLSAMTKIGEETGDIEEMLSKVADYYDEEVDAATNKLTAAMEP-----LIMVILA 378

Query: 139 CVSTLVYFTSPGYMNVLIN 157
           C+  ++     G +  + +
Sbjct: 379 CIVGMIVAAVYGPIMSMYD 397


>gi|168186720|ref|ZP_02621355.1| bacterial type II secretion system protein F [Clostridium botulinum
           C str. Eklund]
 gi|169295347|gb|EDS77480.1| bacterial type II secretion system protein F [Clostridium botulinum
           C str. Eklund]
          Length = 402

 Score = 54.0 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 46/157 (29%), Gaps = 6/157 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D             AG  + ++V ++  Q+    ++     V E    G +LS  + +  
Sbjct: 64  DLAVFCRQFATLFDAGADILNSVDLLKKQTENPKLKDSLEVVYEEIQKGYTLSSCMDKFK 123

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
              P          +    +  G L   +  ++        + +K++   M       + 
Sbjct: 124 DVYPK-----LLVNMVRSGEETGQLGSVMEKMAEQYEREHRINSKIKGAFMYPIILVIVC 178

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
            S    + T V  T          +  G   + +  +
Sbjct: 179 VSAVTFLLTCVMPTFVQMFQDSGVELPGPTKVVMGIS 215



 Score = 40.1 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/147 (8%), Positives = 43/147 (29%), Gaps = 7/147 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +KK   K +         +  ++ +G+ + +A++++     + +               S
Sbjct: 259 VKKTMRKIIAM--RFSRGLSTTLYSGVSMINALSIVAKVIDNKLIELKIMKARE-----S 311

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           + + ++       + E       ++   +  G L + L   +           +     +
Sbjct: 312 VIKGVTLSESLREITEFPEMLFAMTKIGEESGRLDDILEKTASFYEQEVEESLEKMTTMI 371

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGY 151
           E      +   +   V  +       +
Sbjct: 372 EPILIVVMGILIGAIVVAMAMPMFDMF 398


>gi|78065138|ref|YP_367907.1| type II secretion system protein F [Burkholderia sp. 383]
 gi|77965883|gb|ABB07263.1| type II secretion system protein F [Burkholderia sp. 383]
          Length = 403

 Score = 54.0 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 43/143 (30%), Gaps = 6/143 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   ++AGLP++ ++ ++      D +      +      G   +E+++R 
Sbjct: 64  RDVTRFTRQLASLLQAGLPLAPSLEMLARTRPHDGLPRIAAGLAREIVGGRRFAEALARY 123

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G+L   L  L+           K++A      A    
Sbjct: 124 PSQFG-----TLYRQLIEVGEASGSLGIVLTRLAEHRERTDAQWRKLRAALAYPAAVILF 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155
             ++   +   V  T     +  
Sbjct: 179 GLAISAALMVWVVPTFRQIFDGF 201



 Score = 37.0 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 40/130 (30%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+P++DA A +   +           +      G  L++++     +  
Sbjct: 273 WCRSLATLLGAGVPLADAFATLERTAGHPVFEHATAHIAARVLRGARLADAMQSAGCFPD 332

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                         ++  G L   LA+++ +   + + +    A   E      +   + 
Sbjct: 333 DVVQP------IAVAEETGALDMMLADIAALCERQLDARLDALAALGEPLIVIVLGALVG 386

Query: 138 FCVSTLVYFT 147
             V  +    
Sbjct: 387 GLVIAMYLPI 396


>gi|302342771|ref|YP_003807300.1| Type II secretion system F domain protein [Desulfarculus baarsii
           DSM 2075]
 gi|301639384|gb|ADK84706.1| Type II secretion system F domain protein [Desulfarculus baarsii
           DSM 2075]
          Length = 359

 Score = 54.0 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 56/169 (33%), Gaps = 7/169 (4%)

Query: 7   KRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLS 64
           +R      ++  N  + +   V AGLP+   +  +     S  VR+    ++     G S
Sbjct: 12  RRAKPLRAEELCNFTEGLAVLVGAGLPLDHVLETVSFMHDSGRVRALTAEMLLAVRGGAS 71

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L+ +++           S     +    +L G L++ L  L++ LR    +K  +  + +
Sbjct: 72  LTRAMAE-----QNGVFSPAYLGLVQAGELSGALAKVLDELAKGLRRNLEIKRHLLTVLL 126

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
                  +       +   V  T  G  N +           +     +
Sbjct: 127 YPAVLLAVSFLAILFIMIYVLPTFVGVFNDMSTPLPPTAAFLLGLGSFM 175


>gi|167740289|ref|ZP_02413063.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei
           14]
          Length = 387

 Score = 54.0 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/153 (11%), Positives = 42/153 (27%), Gaps = 6/153 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AGL ++ ++ ++   +    +      +      G   S ++ R  R   
Sbjct: 53  FARQLAGLLHAGLALAPSLELLAQATQRSEMPRVAAGLAREIVAGRQFSAALRRYPRQFD 112

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                 F   +    +  G L+  L  L+          A+V+              ++ 
Sbjct: 113 P-----FFCQLVAVGETAGALAAVLTRLADDRERAAAQYARVKGALAYPATVLLFALAIT 167

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             +   V  T   +               +A +
Sbjct: 168 AALLVWVVPTFEQFFAGFGAPLPAPTRFVLALS 200


>gi|66046379|ref|YP_236220.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           B728a]
 gi|289679112|ref|ZP_06500002.1| general secretion pathway protein F [Pseudomonas syringae pv.
           syringae FF5]
 gi|63257086|gb|AAY38182.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           B728a]
          Length = 400

 Score = 54.0 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
               +    +   + AG P+  ++ +++ Q      ++   R+ E    G  LS ++   
Sbjct: 62  AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEE 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    S     +    + GG L   L  LS  L   + ++ +V    +      ++
Sbjct: 122 GSQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +  +   ++ L+ +  P ++ +  +   G  +  +    + +G  +
Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGEFL 217


>gi|323359116|ref|YP_004225512.1| Flp pilus assembly protein TadB [Microbacterium testaceum StLB037]
 gi|323275487|dbj|BAJ75632.1| Flp pilus assembly protein TadB [Microbacterium testaceum StLB037]
          Length = 300

 Score = 54.0 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 68/182 (37%), Gaps = 9/182 (4%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L+++R +    D  + +  +   + AGL  + A   +   +    R           + 
Sbjct: 1   MLVRRRASSTDADPLDTVLRLAVLLSAGLSAAAAWQHLAEDAEPIARDAAAAAAAGDDVA 60

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + L  +          Q     + V +V + +G  L++ L  +   LR+ +++   V+  
Sbjct: 61  VVLRRAG---------QGWLDIAAVWAVATSVGAPLADTLREVGTSLREARDIADDVRVA 111

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
             E  A+A ++  LP     L        + VL  DP G + L    A +++  +  R +
Sbjct: 112 LAEPAATARLLAGLPLVGVPLGAVLGFDTVRVLTADPVGRLCLAAGLALVVMARVWSRRL 171

Query: 183 IN 184
             
Sbjct: 172 AR 173


>gi|307545368|ref|YP_003897847.1| general secretion pathway protein F [Halomonas elongata DSM 2581]
 gi|307217392|emb|CBV42662.1| general secretion pathway protein F [Halomonas elongata DSM 2581]
          Length = 399

 Score = 54.0 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 51/160 (31%), Gaps = 9/160 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + AG P+  A+  +  Q            +           +          
Sbjct: 66  FTQQLATLIAAGQPLDKALTTLHRQLRGARPRALLEALRDDVKAGRPISA----ALARHA 121

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +  S F   +    +  G L E LA L   L   +N++ +V    +      +++  +  
Sbjct: 122 ETFSPFYVSLVRAGEASGVLDETLAQLGDDLERSQNLRGEVINAMIYPL---FLVVGVIG 178

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            V+ L+ +  P ++ +  +   G  L  V  A +     +
Sbjct: 179 SVALLLTYVVPQFVPIFRD--LGVPLPSVTRAILATSGFL 216


>gi|115350534|ref|YP_772373.1| type II secretion system protein [Burkholderia ambifaria AMMD]
 gi|115280522|gb|ABI86039.1| type II secretion system protein [Burkholderia ambifaria AMMD]
          Length = 404

 Score = 54.0 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/164 (9%), Positives = 45/164 (27%), Gaps = 6/164 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            +       +   ++AGLP++ ++ ++   ++ D +      +      G   + +++R 
Sbjct: 65  REVTRFTRQLASLLQAGLPLAPSLEMLARTRTRDGLPRIAAGLAREIVGGQRFAAALARY 124

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L  ++           K+ A      A    
Sbjct: 125 PSQFG-----TLYRQLIEVGEASGALGVVLTRVAEHRERADAQWRKLCAALAYPVAVIVF 179

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
             ++   +   V  T     +             +A +      
Sbjct: 180 ALAISAALMVWVVPTFRQIFDGFGAALPAPTRALLALSSATSAW 223



 Score = 37.4 bits (85), Expect = 0.88,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 41/130 (31%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+P++DA A +   +          ++      G  L++++     +  
Sbjct: 274 WCRSLATLLGAGVPLADAFATLERTAGHPVFEQATAQIAARVLRGARLADAMHAAGCFPD 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                         ++  G L   LA+++ +   + + +    A   E      +   + 
Sbjct: 334 DVVQP------IAVAEETGALDTMLADIAALCERQLDARLDALAALGEPLIVIVLGALVG 387

Query: 138 FCVSTLVYFT 147
             V  +    
Sbjct: 388 GLVIAMYLPI 397


>gi|167646053|ref|YP_001683716.1| type II secretion system protein [Caulobacter sp. K31]
 gi|167348483|gb|ABZ71218.1| type II secretion system protein [Caulobacter sp. K31]
          Length = 402

 Score = 54.0 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 62/192 (32%), Gaps = 28/192 (14%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSES 68
           A       NA+  +   + AGL +  A+AV V   ++  +++   +V +    G  LS +
Sbjct: 57  AAVRRAVVNAIGELAVLLGAGLSLDRALAVCVENATNPTLKAALAQVQKRVREGAPLSRA 116

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           ++              +  +    +  G LS AL+ L   L   + ++  V +  +    
Sbjct: 117 MTEAGGLFSP-----MAAAMVEAGEADGRLSVALSRLGETLDRAEALRQVVSSSMIYPAM 171

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR-------------------GHMLLGVAA 169
              + G     +  ++ F  P +  +  + P                    G  +L    
Sbjct: 172 LTVVTGG---VILMMLLFVVPQFEGLFADSPTQLPLATRMVMGASHLTRAYGLAILLGGG 228

Query: 170 AFMLIGIMVMRL 181
              +      R 
Sbjct: 229 VTGVAVWRWFRR 240


>gi|119715490|ref|YP_922455.1| type II secretion system protein [Nocardioides sp. JS614]
 gi|119536151|gb|ABL80768.1| type II secretion system protein [Nocardioides sp. JS614]
          Length = 312

 Score = 54.0 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 67/159 (42%), Gaps = 2/159 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   ++ R  + L +FP   +++  +V AG     A+  +V +S   + ++  RV+    
Sbjct: 156 LTSQVRARERRILAEFPTVAELLALAVAAGEGPVAALDRVVRRSGGELSADLARVLAEIR 215

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  ++ +   M     L  V+ F+  I+V  + G  L++ L   +  +R+    + ++ 
Sbjct: 216 TGEPVATAFDAMASASGLPLVARFAQGIAVAVERGTPLADVLHAQAADVRE--AGRRELI 273

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159
             +   +    +         T+++   PG + + +  P
Sbjct: 274 EAAARKEVFMMVPVVFLVLPITVLFAFWPGVVGLHLTTP 312


>gi|171059774|ref|YP_001792123.1| type II secretion system protein [Leptothrix cholodnii SP-6]
 gi|170777219|gb|ACB35358.1| type II secretion system protein [Leptothrix cholodnii SP-6]
          Length = 412

 Score = 54.0 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 49/168 (29%), Gaps = 4/168 (2%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           D       +   +RAG+P+  A+A +   +++         +      L    +   M  
Sbjct: 72  DLLLFSRQLNTLLRAGVPILRALAGLQESATNEKMK---STLAEVRHSLESGIA-LSMSL 127

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
               +    F   +    ++ G L E    L   L     M+ +V+A           + 
Sbjct: 128 AQQGKVFDPFYVALVRVGEMTGRLDEVFLRLFHHLEFESAMRQQVKAALRYPIFVVSAMV 187

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
                ++ +V                    + +A++   I    +  +
Sbjct: 188 VALGVINLMVIPAFAPVFEAAGTALPLPTRILMASSRFTIDWGWLMAI 235



 Score = 37.0 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/132 (10%), Positives = 42/132 (31%), Gaps = 5/132 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                     S+++G+P++ A++V+     +       R +E     +   +SI R    
Sbjct: 276 LARFARSFALSLKSGVPIAQALSVVAQTVDN---QHIARKVEGMRTSVERGDSILRSAAA 332

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                 +     +    +  G + E +  ++ +  +    + K     +E     ++   
Sbjct: 333 AG--VFTPVVLQMIAVGEETGAVDELMDEVAELYGNEVQYELKTLGQQIEPILIVFLGVL 390

Query: 136 LPFCVSTLVYFT 147
           +      +    
Sbjct: 391 VLMLALGVFLPV 402


>gi|157502153|ref|YP_001485252.1| hypothetical protein pBMB67_066 [Bacillus thuringiensis]
 gi|87133458|gb|ABD24368.1| hypothetical membrane protein [Bacillus thuringiensis]
          Length = 305

 Score = 54.0 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 65/175 (37%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +  K+      +     L+ +  ++ A    S A+  I+     P++ +    +     G
Sbjct: 113 YKKKRYELYVEEQLMLYLNSLANAMSAYENPSFAIKSILPLMQSPIKEDVENCLIVHLEG 172

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S+ ES   ++     + +  F  ++ + S+ G +    L  ++   + +K  KAK++A 
Sbjct: 173 TSIKESFEPLINKYKYKNLKLFHDMLDLISKTGKDEDGLLMRIADEFQQKKIYKAKLKAG 232

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
               ++S   I  +      +    +          P G ++L +     +I  +
Sbjct: 233 MEPKRSSFKKIAIMTASFPFMFLAVTADDYIAFAGTPTGKIILTLMILVNIICAV 287


>gi|330966306|gb|EGH66566.1| general secretion pathway protein F [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 400

 Score = 54.0 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
               +    +   + AG P+  ++ +++ Q      R+   R+ E    G  LS ++   
Sbjct: 62  AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGKPLSVALEEE 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    S     +    + GG L   L  LS  L   + ++ +V    +      ++
Sbjct: 122 GSQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +  +   ++ L+ +  P ++ +  +   G  +  +    + +G  +
Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILDLGQFL 217


>gi|88856328|ref|ZP_01130987.1| hypothetical protein A20C1_00270 [marine actinobacterium PHSC20C1]
 gi|88814412|gb|EAR24275.1| hypothetical protein A20C1_00270 [marine actinobacterium PHSC20C1]
          Length = 301

 Score = 54.0 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 49/125 (39%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
              + P  L+ +  S+ AG  + DAV  +   S   + +E  RV+ + + GL   E++  
Sbjct: 168 LTAELPVVLEFLALSLSAGEGILDAVRRVSQVSGGELSNELARVVASVNTGLPFGETLGA 227

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           + R + L   +     I      G  LSE L   ++  R+    +    A   E      
Sbjct: 228 LARELELPPFNRCVDQILGALDRGTPLSEVLQAQAQDAREESKRELLELAGKKEVAMLFP 287

Query: 132 IIGSL 136
           ++  L
Sbjct: 288 LVSGL 292


>gi|330938347|gb|EGH41975.1| type II secretion system protein [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 204

 Score = 54.0 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 68/157 (43%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  + ++R  + + +    + ++     +G+ V  A+ V+  +       +  E R V+ 
Sbjct: 44  LATVARRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLM 103

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL L E + +    + + E+S    +++     GG   ++L  L +++ DR+  + 
Sbjct: 104 RVDSGLELGEELRKTAALLDVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 163

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +     + AK S  ++  L   +  ++    PG+M +
Sbjct: 164 QEYISKLSAKMSVVMMVFLFPALLIVL--AGPGFMAI 198


>gi|167589644|ref|ZP_02382032.1| type II secretion system protein [Burkholderia ubonensis Bu]
          Length = 264

 Score = 54.0 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 59/143 (41%), Gaps = 5/143 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSLSESISRM 72
            P+ALD++V    AG  ++  V  +  +      P+  E     +   L   ++ +++  
Sbjct: 120 LPDALDLLVICTMAGNSLASGVRRVAHELARICPPLADELSVCADELTLSGDVAATLTHF 179

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              + L      +T ++   + G  +++AL  L+R  R  + +  + +A  +  K +  +
Sbjct: 180 ATRVDLPSARSLATTLTQSQRFGTPITQALRTLARTERTEQIVALEERAAKLAPKITLPM 239

Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155
           +  +   V   +    P  + +L
Sbjct: 240 MLFILPTVC--LIAAGPAAIRLL 260


>gi|262370046|ref|ZP_06063373.1| general secretion pathway protein F [Acinetobacter johnsonii SH046]
 gi|262315085|gb|EEY96125.1| general secretion pathway protein F [Acinetobacter johnsonii SH046]
          Length = 401

 Score = 54.0 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 53/163 (32%), Gaps = 11/163 (6%)

Query: 9   TAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66
             +    D       +   V A +P+ +A+  +  QS    V++    V      G SL+
Sbjct: 58  QKQITAYDLALLTRQLSVLVAAAIPLEEAIRAVGKQSEKAHVQNLLMSVRSKVLEGHSLA 117

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           + + +  R                  +  G+L   L  L+    +R  M+ K+Q   +  
Sbjct: 118 QGLQQSGR------FPELYIATIAAGERSGHLDLILDQLADYTENRFAMQKKIQGAMIYP 171

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
                +  ++   V  L+ +  P  +            + VA 
Sbjct: 172 IILMLMSFAI---VMGLMTYVVPDIVKTFDQSKDALPWITVAL 211


>gi|77359205|ref|YP_338780.1| general secretion pathway protein F [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874116|emb|CAI85337.1| putative general secretion pathway protein F [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 411

 Score = 54.0 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/172 (11%), Positives = 51/172 (29%), Gaps = 6/172 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   +++ LPV  AV  +  Q     ++     V      G +L++ +S 
Sbjct: 70  TSDLALITRQLATLIQSALPVEGAVMAVAEQCEKPRLKRMLMSVRSKVVEGYTLADGMSE 129

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    +  G+L + L  L+     R+ M++++    +       
Sbjct: 130 FP-----HVFDDLYRAMVAAGEKSGHLDQVLNRLADYTEQRQYMRSQITQAMVYPIILVV 184

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
              ++   +   V                      +A +  +     + L++
Sbjct: 185 FAIAIVSVLLGTVVPKILKTFEKTKQVLPWTTEWVMAGSHFVQNYWFISLIV 236


>gi|116048594|ref|YP_792607.1| putative type II secretion system protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296390958|ref|ZP_06880433.1| putative type II secretion system protein [Pseudomonas aeruginosa
           PAb1]
 gi|115583815|gb|ABJ09830.1| probable type II secretion system protein [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 404

 Score = 54.0 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/166 (11%), Positives = 55/166 (33%), Gaps = 6/166 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D   A   +   + A LP+  A++  + Q+    +      V      G+ L+++++   
Sbjct: 66  DLAWATRQLASLLAASLPLEAALSATLDQAERKHIAQTLSAVRSDVRGGMRLADALAARP 125

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R     +       +    +  G+L++ +  L+  + +R  ++ K+    +       + 
Sbjct: 126 R-----DFPEIYRALVAAGEESGDLAQVMERLADYIEERNALRGKILTAFIYPAVVGVVS 180

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             +   +   V        +    D        + A+  +     +
Sbjct: 181 IGIVIFLLGYVVPQVVSAFSQARQDLPALTRAMLQASDFVRAWGWL 226



 Score = 36.6 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 38/130 (29%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       ++  +             G+SL+ ++        
Sbjct: 273 FASTLAILGSAGVPLLRALDAARQTLANDCLAQAVEEATAQVREGVSLASALRT------ 326

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            Q      T +    +  G L   L   ++ L      +A      +E      + G + 
Sbjct: 327 RQVFPPILTHLIASGEKTGALPPMLDRAAQTLSRDIERRAMGMTALLEPLMIVVMGGVVL 386

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 387 TIVMAVLMPI 396


>gi|283788037|ref|YP_003367902.1| T2SS protein F [Citrobacter rodentium ICC168]
 gi|282951491|emb|CBG91190.1| putative T2SS protein F [Citrobacter rodentium ICC168]
          Length = 399

 Score = 54.0 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 53/163 (32%), Gaps = 6/163 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   + A LP+ +A+A+I  Q  +  + S    +      G SLS ++    
Sbjct: 61  DLTLFTRQLATLIAAALPLDEALAIIQQQKENKKLSSVINGLRLAVLEGQSLSRAMQNHP 120

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +    +  G L   L  L+     R+ M++K+    +       + 
Sbjct: 121 RL-----FDDVFCTLVKAGETVGQLGGVLERLADFNETRQRMRSKLTQALIYPVLLTTVA 175

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
             +   + T V          L ++      + +A +  L   
Sbjct: 176 ILVVAILLTTVVPKVAAQFLHLKHELPLTTRILLAISDFLSAW 218


>gi|312795078|ref|YP_004028000.1| Type IV pilus assembly protein tapC [Burkholderia rhizoxinica HKI
           454]
 gi|312166853|emb|CBW73856.1| Type IV pilus assembly protein tapC [Burkholderia rhizoxinica HKI
           454]
          Length = 414

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 5/157 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            D   A   +   +R+GL +  A+A++   +  P++  F  V+     G +LS ++ R  
Sbjct: 76  ADLTRATRHLAMLLRSGLSLQPALALVAQHAGMPLKPLFETVLRDITEGSTLSRALQRHD 135

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R  P          +   ++  G+L   LA L+         +A+++           + 
Sbjct: 136 RVFPAAYWR-----LVELAEHTGSLDTILAQLADTRDRVAAQRARLRNALWYPTLILALA 190

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             L   +   V  T         +       + VA +
Sbjct: 191 LGLCALLLAWVVPTFERVFAGFGSQLPRPTRIVVALS 227


>gi|302671410|ref|YP_003831370.1| type II secretion system protein F GspF [Butyrivibrio
           proteoclasticus B316]
 gi|302395883|gb|ADL34788.1| type II secretion system protein F GspF [Butyrivibrio
           proteoclasticus B316]
          Length = 351

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/147 (10%), Positives = 51/147 (34%), Gaps = 5/147 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           +  +    +   ++AG+  ++ + +++  + D   S  + +     +  S  +    +  
Sbjct: 14  EISSFCRQMALLIKAGISPAEGIEILLQDTHD--ASAQKLLSSISQVLHSGEKFHIALEM 71

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                E   +   +    +  G+L   + +LS      +N+ + +++         +++ 
Sbjct: 72  SGAFPE---YMIHMVTIGEESGSLDTVMNSLSEYYEREENISSSIKSAVSYPLIMVFMML 128

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRG 161
            +   + T V          L  +  G
Sbjct: 129 VVVIVLITKVLPIFEQVFAQLGTNMSG 155


>gi|37676258|ref|NP_936654.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
 gi|37200799|dbj|BAC96624.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
          Length = 292

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 49/137 (35%), Gaps = 2/137 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIET 58
           +       T       P  LD++   V  G+ +   +  +  +    D   +    V   
Sbjct: 135 ISSRANSITRHISSRLPFLLDLMNVCVHTGMTIEATLEYLANELQTVDKYLAFTVNVTVQ 194

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +   + +++++      +P  E   F   +    Q G ++ + L  L+  +R    M+ +
Sbjct: 195 RSKVIGINKALEEFYEMVPSSEAQSFVMTLIQSLQFGSSVGQVLGTLATDIRQINMMELE 254

Query: 119 VQALSMEAKASAWIIGS 135
            +   + AK S  +I  
Sbjct: 255 EKIGKLGAKMSIPMIVF 271


>gi|254244923|ref|ZP_04938245.1| hypothetical protein PA2G_05799 [Pseudomonas aeruginosa 2192]
 gi|126198301|gb|EAZ62364.1| hypothetical protein PA2G_05799 [Pseudomonas aeruginosa 2192]
          Length = 404

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/166 (11%), Positives = 55/166 (33%), Gaps = 6/166 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D   A   +   + A LP+  A++  + Q+    +      V      G+ L+++++   
Sbjct: 66  DLAWATRQLASLLAASLPLEAALSATLDQAERKHIAQTLSAVRSDVRGGMRLADALAARP 125

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R     +       +    +  G+L++ +  L+  + +R  ++ K+    +       + 
Sbjct: 126 R-----DFPEIYRALVAAGEESGDLAQVMERLADYIEERNALRGKILTAFIYPAVVGVVS 180

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             +   +   V        +    D        + A+  +     +
Sbjct: 181 IGIVIFLLGYVVPQVVSAFSQARQDLPALTRAMLQASDFVRAWGWL 226



 Score = 36.6 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 38/130 (29%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       ++  +             G+SL+ ++        
Sbjct: 273 FASTLAILGSAGVPLLRALDAARQTLANDCLAQAVEEATAQVREGVSLASALRT------ 326

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            Q      T +    +  G L   L   ++ L      +A      +E      + G + 
Sbjct: 327 RQVFPPILTHLIASGEKTGALPPMLDRAAQTLSRDIERRAMGMTALLEPLMIVVMGGVVL 386

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 387 TIVMAVLMPI 396


>gi|15595884|ref|NP_249378.1| type II secretion system protein [Pseudomonas aeruginosa PAO1]
 gi|107100153|ref|ZP_01364071.1| hypothetical protein PaerPA_01001174 [Pseudomonas aeruginosa PACS2]
 gi|218893355|ref|YP_002442224.1| putative type II secretion system protein [Pseudomonas aeruginosa
           LESB58]
 gi|254239065|ref|ZP_04932388.1| hypothetical protein PACG_05245 [Pseudomonas aeruginosa C3719]
 gi|9946567|gb|AAG04076.1|AE004503_14 probable type II secretion system protein [Pseudomonas aeruginosa
           PAO1]
 gi|126170996|gb|EAZ56507.1| hypothetical protein PACG_05245 [Pseudomonas aeruginosa C3719]
 gi|218773583|emb|CAW29397.1| probable type II secretion system protein [Pseudomonas aeruginosa
           LESB58]
          Length = 404

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/166 (11%), Positives = 55/166 (33%), Gaps = 6/166 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D   A   +   + A LP+  A++  + Q+    +      V      G+ L+++++   
Sbjct: 66  DLAWATRQLASLLAASLPLEAALSATLDQAERKHIAQTLSAVRSDVRGGMRLADALAARP 125

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R     +       +    +  G+L++ +  L+  + +R  ++ K+    +       + 
Sbjct: 126 R-----DFPEIYRALVAAGEESGDLAQVMERLADYIEERNALRGKILTAFIYPAVVGVVS 180

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             +   +   V        +    D        + A+  +     +
Sbjct: 181 IGIVIFLLGYVVPQVVSAFSQARQDLPALTRAMLQASDFVRAWGWL 226



 Score = 36.6 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 38/130 (29%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       ++  +             G+SL+ ++        
Sbjct: 273 FASTLAILGSAGVPLLRALDAARQTLANDCLAQAVEEATAQVREGVSLASALRT------ 326

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            Q      T +    +  G L   L   ++ L      +A      +E      + G + 
Sbjct: 327 RQVFPPILTHLIASGEKTGALPPMLDRAAQTLSRDIERRAMGMTALLEPLMIVVMGGVVL 386

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 387 TIVMAVLMPI 396


>gi|88861066|ref|ZP_01135701.1| putative general secretion pathway protein F [Pseudoalteromonas
           tunicata D2]
 gi|88816994|gb|EAR26814.1| putative general secretion pathway protein F [Pseudoalteromonas
           tunicata D2]
          Length = 405

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 48/144 (33%), Gaps = 9/144 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   +++ LPV  AV  +  QS    ++     V      G +L++ +  
Sbjct: 64  TSDLALVTRQLATLIQSALPVEAAVLAVAEQSEKPRLKRMLMAVRSKVVEGYTLADGLGE 123

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    +  G+L + L  L+     R++M++++    +       
Sbjct: 124 FP-----HIFDNLFRSMVAAGEKSGHLDQVLNRLADYTEQRQHMRSQITQAMVYPT---V 175

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL 155
           ++      V+ L+    P  +   
Sbjct: 176 LVVFAIGIVAILLGTVVPKILKTF 199


>gi|330954615|gb|EGH54875.1| type II secretion system protein [Pseudomonas syringae Cit 7]
          Length = 400

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
               +    +   + AG P+  ++ +++ Q      ++   R+ E    G  LS ++   
Sbjct: 62  AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEE 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    S     +    + GG L   L  LS  L   + ++ +V    +      ++
Sbjct: 122 GSQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +  +   ++ L+ +  P ++ +  +   G  +  +    + +G  +
Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGQFL 217


>gi|317133736|ref|YP_004089647.1| Type II secretion system F domain [Ruminococcus albus 7]
 gi|315450198|gb|ADU23761.1| Type II secretion system F domain [Ruminococcus albus 7]
          Length = 286

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 66/156 (42%), Gaps = 3/156 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +K+ A+F  + P  LD+   +++  LPV+ A+ +        +  E  R +    
Sbjct: 130 INDRAQKKKAQFESEIPRFLDLFQTAIKINLPVATAIKITAESIDGILSEELLRALVVTE 189

Query: 61  LGLSLSE-SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           LG S  + S+  + +   +   S F   I    Q G +++E++   SR ++    + AK 
Sbjct: 190 LGTSNWQDSLYDIAQKYEVDSFSDFVLDIVTAFQKGSDITESVERQSRSIKSSTLLSAKE 249

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           QA    +     ++      +  +++   P  M +L
Sbjct: 250 QAAKTTSLILIPVVVFKMIPLMIILFL--PVIMQIL 283


>gi|115358176|ref|YP_775314.1| type II secretion system protein [Burkholderia ambifaria AMMD]
 gi|115283464|gb|ABI88980.1| type II secretion system protein [Burkholderia ambifaria AMMD]
          Length = 314

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 57/135 (42%), Gaps = 3/135 (2%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSES 68
               FP+ALD++V    AG  ++  V  +  +      P+  E     +   L  ++SE+
Sbjct: 166 IAACFPDALDLLVICTMAGNSLASGVRRVARELQRICPPLADELTVCADELTLSGNVSEA 225

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           ++     +        +T ++   + G  +++AL  LSR  R  + +  + +A  +  K 
Sbjct: 226 LAHFALRVNFSSARSLATTLTQSQRFGTPITQALRTLSRSERTEQVVALEEKAAKLAPKI 285

Query: 129 SAWIIGSLPFCVSTL 143
           +  ++  +   V  +
Sbjct: 286 TVPMMLFILPTVGLI 300


>gi|30249238|ref|NP_841308.1| type II secretion system protein [Nitrosomonas europaea ATCC 19718]
 gi|30180557|emb|CAD85167.1| Bacterial type II secretion system protein [Nitrosomonas europaea
           ATCC 19718]
          Length = 406

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 60/178 (33%), Gaps = 12/178 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D     + I   V +GL +  A+ V+  Q  + P     R ++     G  LS+++   
Sbjct: 66  RDVALFCEQIGTMVGSGLNIEQALQVVSRQKGNRPSARMARHLLPRIQAGGPLSDALDI- 124

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                   +  +   +   ++ GG L+E L    R L+ + + +A++             
Sbjct: 125 -----EVGMPRYLPSMIRAAESGGRLAEGLETAGRYLQRQASTRAEIANALTYPVIVLVT 179

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-----IMVMRLMINF 185
           +      V T+V            +   G     +  + + +      ++ M  ++  
Sbjct: 180 VMIALLIVLTVVIPGFEPIFAGEEHRLPGMTRFVLWLSDLAVNHAITSLLWMGAILAI 237


>gi|189016767|ref|YP_001711806.1| hypothetical protein CMS_pCSL0077 [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|167728938|emb|CAQ03320.1| putative membrane protein [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 288

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/171 (9%), Positives = 49/171 (28%), Gaps = 2/171 (1%)

Query: 10  AKFLDDFPNALDIIVRSVRAG-LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
              L         +  +   G   + + + +    +   +R    R+        S +++
Sbjct: 95  RDLLSALEAWTRSLAATADTGTFTLREVIDLSRTAAPPILRVTVDRLNNRMSGSWSNTDA 154

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +      +           +   ++     LS AL  L+  L  +   +  +     + +
Sbjct: 155 LRAFADELDSAWADEVVIYLIQAAEFNAGGLSTALEGLADNLATQVKQRRLIYNERDKPR 214

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            +   +  +   V   +   S        + P G  +L V      + ++ 
Sbjct: 215 RTLVQMTGIVGFVLACIVVFSGSPQLASFSTPLGQSILVVIIGMFALILVW 265


>gi|28870480|ref|NP_793099.1| general secretion pathway protein F [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213970082|ref|ZP_03398214.1| general secretion pathway protein F [Pseudomonas syringae pv.
           tomato T1]
 gi|301381439|ref|ZP_07229857.1| general secretion pathway protein F [Pseudomonas syringae pv.
           tomato Max13]
 gi|302132993|ref|ZP_07258983.1| general secretion pathway protein F [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|28853727|gb|AAO56794.1| general secretion pathway protein F [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213925186|gb|EEB58749.1| general secretion pathway protein F [Pseudomonas syringae pv.
           tomato T1]
 gi|331017221|gb|EGH97277.1| general secretion pathway protein F [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 400

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
               +    +   + AG P+  ++ +++ Q      R+   R+ E    G  LS ++   
Sbjct: 62  AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGKPLSVALEEE 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    S     +    + GG L   L  LS  L   + ++ +V    +      ++
Sbjct: 122 GSQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +  +   ++ L+ +  P ++ +  +   G  +  +    + +G  +
Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILDLGQFL 217


>gi|253988608|ref|YP_003039964.1| type IV pilin biogenesis protein [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780058|emb|CAQ83219.1| protein transport protein hofc [Photorhabdus asymbiotica]
          Length = 399

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/139 (11%), Positives = 44/139 (31%), Gaps = 6/139 (4%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYM 76
           N +  +   + +G+P+ + + +++ + S+P+       + +    G S S S+       
Sbjct: 63  NFIRQLATLLSSGMPLLNCLNILIRECSNPLWHCVLSDISKRITRGESFSTSLKNYPFLF 122

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
           P          +    +L G L      L +    +  ++ K+            +   +
Sbjct: 123 PP-----LFYQLIAVGELTGQLEICCQLLIKQQEQQDKLQKKIAKALRYPLIIIVVANII 177

Query: 137 PFCVSTLVYFTSPGYMNVL 155
              +   V        +  
Sbjct: 178 ILLMLIFVLPEFEHIYHSF 196


>gi|228942720|ref|ZP_04105248.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228975831|ref|ZP_04136361.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228982328|ref|ZP_04142604.1| Hypothetical membrane protein [Bacillus thuringiensis Bt407]
 gi|228777433|gb|EEM25724.1| Hypothetical membrane protein [Bacillus thuringiensis Bt407]
 gi|228783857|gb|EEM31906.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228816931|gb|EEM63028.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 305

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 65/175 (37%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +  K+      +     L+ +  ++ A    S A+  I+     P++ +    +     G
Sbjct: 113 YKKKRYELYVEEQLMLYLNSLANAMSAYENPSFAIKSILPLMQSPIKEDVENCLIVHLEG 172

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S+ ES   ++     + +  F  ++ + S+ G +    L  ++   + +K  KAK++A 
Sbjct: 173 TSIKESFEPLINKYKYKNLKLFHDMLDLISKTGKDEDGLLMRIADEFQQKKIYKAKLKAG 232

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
               ++S   I  +      +    +          P G ++L +     +I  +
Sbjct: 233 MEPKRSSFKKIAIMTASFPFMFLAVTADDYIAFAGTPTGKIILTLMILVNIICAV 287


>gi|257790307|ref|YP_003180913.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|325830125|ref|ZP_08163582.1| type II secretion system protein F domain protein [Eggerthella sp.
           HGA1]
 gi|257474204|gb|ACV54524.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|325487592|gb|EGC90030.1| type II secretion system protein F domain protein [Eggerthella sp.
           HGA1]
          Length = 312

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/141 (11%), Positives = 43/141 (30%), Gaps = 1/141 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   ++R      D    L+++   +R+GL      A+        +            
Sbjct: 156 VKRAQRERADGLESDLSEMLEVVALGLRSGLSFDRGFALYGSHFDSDLARACVGAQHAWS 215

Query: 61  LG-LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           LG  +  +++  +         +     +    + G +L+E L + +   R     + + 
Sbjct: 216 LGLTNREDALRDLAASYDSPLFARVVENMVRSLRFGSSLAEGLESAAAEARAVHRAQVEE 275

Query: 120 QALSMEAKASAWIIGSLPFCV 140
           +      K        +   +
Sbjct: 276 RVAKAPVKMMVPTGTLILPAM 296


>gi|167760287|ref|ZP_02432414.1| hypothetical protein CLOSCI_02660 [Clostridium scindens ATCC 35704]
 gi|167662170|gb|EDS06300.1| hypothetical protein CLOSCI_02660 [Clostridium scindens ATCC 35704]
          Length = 382

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 51/157 (32%), Gaps = 9/157 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--------DPVRSEF 52
           ++   +++  + + D+P  ++ +   + AG+ V  A   +V                 E 
Sbjct: 221 IRKEGEEKKRQMMLDYPEIVNKLALFLGAGMTVKRAWRKVVEDYERHKTDGNARHAYEEM 280

Query: 53  RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANL-SRILRD 111
           ++       G+  +ES     R   +Q       ++S   + G      L  L S    +
Sbjct: 281 KKACYEMESGVMETESYENFGRRCNVQSYIRLGALLSQNLRKGTKGLTHLLRLESIQAFE 340

Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
            +  +AK        K    +   L   +  ++    
Sbjct: 341 ERKARAKRLGEEAGTKLLLPMFLMLAIVLIIVIVPAF 377


>gi|118475095|ref|YP_892177.1| type II secretion system protein [Campylobacter fetus subsp. fetus
           82-40]
 gi|118414321|gb|ABK82741.1| type II secretion system protein [Campylobacter fetus subsp. fetus
           82-40]
          Length = 413

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 64/167 (38%), Gaps = 8/167 (4%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPL 78
           +  +     AG+ + D++  ++  ++D      F  V +  + G+S++ES++        
Sbjct: 79  IRQLSVMTNAGISIHDSIKEVIKSTTDKRLKLIFENVNDDLNAGMSITESLNLYSD---- 134

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
            E+      +    +  GN++E+L  L+ IL++  + + K +            I     
Sbjct: 135 -ELGNVVIAMVRLGEESGNMAESLQKLAEILQEIWDNQRKFKKAIRYPTLVICAIAIAFV 193

Query: 139 CVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVMRLMI 183
            +  LV  T       L  +      +LL +       G + +  ++
Sbjct: 194 LLMVLVVPTFRDIFEQLNAELPLPTRILLNIEYLITNYGFICLGGIV 240


>gi|330889707|gb|EGH22368.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 400

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
               +    +   + AG P+  ++ +++ Q      ++   R+ E    G  LS ++   
Sbjct: 62  AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEE 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    S     +    + GG L   L  LS  L   + ++ +V    +      ++
Sbjct: 122 GTQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +  +   ++ L+ +  P ++ +  +   G  +  +    + +G  +
Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGQFL 217


>gi|323525750|ref|YP_004227903.1| Type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1001]
 gi|323382752|gb|ADX54843.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1001]
          Length = 367

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 58/144 (40%), Gaps = 5/144 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHLGLSLSESIS 70
           D+ P  +D++      GL +  ++ V+V         + SE          G +  +S+S
Sbjct: 217 DELPMLVDLLRLLQGVGLSLDQSLQVMVNDFRGVLPVLSSELDIAQRQFAAGRTREQSLS 276

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           R+      +++     ++    + GG + E L      LR+ +    + +   M  K + 
Sbjct: 277 RLASSFENEDLRAVVRLLIQVDRHGGAVQEPLKQFGDRLRETRRAMLRERIGRMAVKMTG 336

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNV 154
            +I +L   +  ++    PG ++V
Sbjct: 337 VMILTLLPAL--MIVTAGPGVLSV 358


>gi|183221064|ref|YP_001839060.1| general secretion pathway protein F [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189911158|ref|YP_001962713.1| type II secretory pathway protein F [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167775834|gb|ABZ94135.1| Type II secretory pathway component, protein F [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779486|gb|ABZ97784.1| General secretion pathway protein F [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 408

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/159 (10%), Positives = 42/159 (26%), Gaps = 4/159 (2%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + AG+P+   +  I+ Q  +       +V+      ++              
Sbjct: 72  FCKQLGTLIGAGIPLDKCLLSIIDQVENIYFK---KVLIEMRADIT-EGMSLSESMKKHK 127

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  GN    L  L+ +      +K+KVQ   +       +   +  
Sbjct: 128 TVFPDQYPSLISVGESTGNYENTLHRLAELEEKSSELKSKVQVAMIYPMIMGLLSLGVSI 187

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
            +  +V                      +  +++L    
Sbjct: 188 FLLVVVIPQIEQLFASFDAKLPLLTRAVIFLSYVLTNYW 226


>gi|157363368|ref|YP_001470135.1| type II secretion system protein [Thermotoga lettingae TMO]
 gi|157313972|gb|ABV33071.1| type II secretion system protein [Thermotoga lettingae TMO]
          Length = 397

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 61/173 (35%), Gaps = 12/173 (6%)

Query: 1   MKHLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRR 54
           ++ +  +++ + L+    +       +   V AG+ + DA++++  Q   S   R     
Sbjct: 42  VQQVSSRKSRELLNVSLSELVVFSRQLATMVGAGVRIKDALSILSNQVVFSSRFRKIINH 101

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           ++ +   G S SE++                  +    + GG L + L   +      K 
Sbjct: 102 LVVSLETGSSFSEALRNEG------VFDSIFINLVSAGEEGGVLDKTLDKAAEFYESSKR 155

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
           ++ +V++              + F +S  +     G    + +      L+GV
Sbjct: 156 LQDEVKSAMAYPMFVLVFAIGVIFVISFYILPRLIGAFGSIPSSGIIGFLMGV 208



 Score = 37.4 bits (85), Expect = 0.94,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 44/131 (33%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAV-IVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +     +G+ ++ A+ +     +S  +  + + V E    G SL +++        
Sbjct: 265 FCRTLSVLTGSGVLLTKAIEMSAAASNSPKMVKKSKIVSERVKEGASLRQAMIEA----- 319

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G L E LA ++    ++  +  K     +E    A + G + 
Sbjct: 320 -TIFPQIVYELVGTGEETGKLEEVLAKVADFYEEQVRIGVKKLVSLVEPMLIAGVGGFIA 378

Query: 138 FCVSTLVYFTS 148
           F   T+     
Sbjct: 379 FMAFTMYNTIF 389


>gi|300722074|ref|YP_003711354.1| type IV pilin biogenesis transmembrane protein [Xenorhabdus
           nematophila ATCC 19061]
 gi|297628571|emb|CBJ89145.1| component in type IV pilin biogenesis, transmembrane protein
           [Xenorhabdus nematophila ATCC 19061]
          Length = 399

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/198 (11%), Positives = 58/198 (29%), Gaps = 26/198 (13%)

Query: 2   KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           K +I  R  +       + +  +   + +G+P+   + +++        R   + +I+  
Sbjct: 48  KRMIHYREKEMTYRQ--HFIHQLSTLLTSGIPLLRGLIILLQDCKLALWRCVLKDMIQKI 105

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G S S +++   +       S     I    +  G L      +   L  +  ++ K+
Sbjct: 106 SQGESFSSTLAYYPKL-----FSPLFCQIIAVGEQTGQLENCCQLIISQLEQQNMLQKKI 160

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR----------------GHM 163
           Q         A++   +   +   V        +                       G  
Sbjct: 161 QKAYRYPLIVAFVTLLVILLMLIFVLPEFRQVYSSFNATLPLLTQWVLSGSDFLIHHGLF 220

Query: 164 LLGVAAAFMLIGIMVMRL 181
            L +    +  G + +R 
Sbjct: 221 TLLIIFILLT-GYLWLRK 237


>gi|71736449|ref|YP_275239.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557002|gb|AAZ36213.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320323741|gb|EFW79825.1| general secretion pathway protein F [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327883|gb|EFW83888.1| general secretion pathway protein F [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 400

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
               +    +   + AG P+  ++ +++ Q      ++   R+ E    G  LS ++   
Sbjct: 62  AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEE 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    S     +    + GG L   L  LS  L   + ++ +V    +      ++
Sbjct: 122 GTQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +  +   ++ L+ +  P ++ +  +   G  +  +    + +G  +
Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGQFL 217


>gi|331010776|gb|EGH90832.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 400

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
               +    +   + AG P+  ++ +++ Q      R+   R+ E    G  LS ++   
Sbjct: 62  AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGKPLSVALEEE 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    S     +    + GG L   L  LS  L   + ++ +V    +      ++
Sbjct: 122 GTQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +  +   ++ L+ +  P ++ +  +   G  +  +    + +G  +
Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGQFL 217


>gi|166154785|ref|YP_001654903.1| general secretion pathway protein F [Chlamydia trachomatis 434/Bu]
 gi|166155660|ref|YP_001653915.1| general secretion pathway protein F [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301336060|ref|ZP_07224304.1| general secretion pathway protein F [Chlamydia trachomatis L2tet1]
 gi|165930773|emb|CAP04270.1| general secretion pathway protein F [Chlamydia trachomatis 434/Bu]
 gi|165931648|emb|CAP07224.1| general secretion pathway protein F [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 391

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 58/193 (30%), Gaps = 15/193 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           ++ + ++       +       +   +R+G+ + DA+  +  Q     +      ++E  
Sbjct: 42  IRKVRERNYRVTTTELVIFTKQLALLLRSGISLYDALTSLRDQYQGHALAGVLTSLMEAL 101

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G   SE+++R            F        +  GNL  AL N+ ++L +++ +   +
Sbjct: 102 RSGGVFSEALARFP-----HIFDSFYQNSVRSGESIGNLEGALMNIIKVLEEKEKLSKSL 156

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG---------VAAA 170
            A             ++       V  T       +        +               
Sbjct: 157 AAALSYPAILLVFSCAVVVFFLIGVIPTLKETFEDMEMTRLTKAVFSCSTWFCRYKFLVL 216

Query: 171 FMLIGIMVMRLMI 183
              IG  +   ++
Sbjct: 217 LGGIGGAISLRIV 229


>gi|159042209|ref|YP_001541461.1| type II secretion system protein [Caldivirga maquilingensis IC-167]
 gi|157921044|gb|ABW02471.1| type II secretion system protein [Caldivirga maquilingensis IC-167]
          Length = 590

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/177 (11%), Positives = 57/177 (32%), Gaps = 8/177 (4%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSE 67
                  F + L       ++G      ++ +   +    +    + + +    G+ +  
Sbjct: 375 RRSLERAFSDFLRDFTELRKSGFTPEKIISTLADTRDYGALSRYLKDISKQIRYGIPIRV 434

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
            +S  +          F+ ++    + GG   E L +L+        +   + A     +
Sbjct: 435 VLSEFMNRTRSYYARVFAWLLLESIEYGGATPETLESLASFSSLMIRINDDLLARLKPLR 494

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP-------RGHMLLGVAAAFMLIGIM 177
              +I   +      ++ FT  G  +V ++ P        G   L +     ++G++
Sbjct: 495 FVPYIGAMILTLTLVIMVFTVVGLSSVFLHIPQYYVNYVVGSFALTIVVDSFVMGLV 551



 Score = 34.7 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 45/144 (31%), Gaps = 2/144 (1%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQHLGLSLSES 68
           K   + P     +    ++GL V+ A+  +          +     V++ + +G+    +
Sbjct: 117 KVDSELPFFAAYLAMISQSGLSVTSAIERLANIRLLEAIGKIAREIVVKNKAIGMDPLTA 176

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           ++      P               + GG++   L      + +    K +  A  +    
Sbjct: 177 LTESALSTPSHLFQNLIMGYVTNVRTGGDILHYLEIRLNEIVNDTLDKIRRGAEFLSTLM 236

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYM 152
            ++I   +   +   V + +    
Sbjct: 237 ESYIGAGVILLIGLNVLYLAQAIT 260


>gi|183602333|ref|ZP_02963700.1| hypothetical protein BIFLAC_00684 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219682691|ref|YP_002469074.1| type II secretion system protein [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|241190267|ref|YP_002967661.1| Flp pilus assembly protein [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241195673|ref|YP_002969228.1| Flp pilus assembly protein [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183218547|gb|EDT89191.1| hypothetical protein BIFLAC_00684 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219620341|gb|ACL28498.1| type II secretion system protein [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|240248659|gb|ACS45599.1| Flp pilus assembly protein [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250227|gb|ACS47166.1| Flp pilus assembly protein [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|295793254|gb|ADG32789.1| Flp pilus assembly protein [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 244

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 58/192 (30%), Gaps = 27/192 (14%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQ-------------------SSDPVRSEFRRVIETQ 59
            L  I+ S++AG  +  A+                         +S    +     +   
Sbjct: 49  MLSSIIASLQAGAALEPALERAFDSVFPERRCGGARARHMRDPTTSGDGHAVGVYAVCDG 108

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVIS--------VQSQLGGNLSEALANLSRILRD 111
              + +++            E +     ++        V  +LG   +  L  +      
Sbjct: 109 EGNVDVTQMARLFAACRLPHERASHCAQVACGVAVASAVSLELGCPAARCLEAVRAGYLR 168

Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
            +             K++A ++ +LP  V  L        + +L    +G  +L +    
Sbjct: 169 ARLQDDLRANAFAMPKSTARMLLALPAVVVFLGELLGADPLGMLFGSAQGRAMLCLGTIC 228

Query: 172 MLIGIMVMRLMI 183
            + G++ M+ ++
Sbjct: 229 YVGGLLWMQRLL 240


>gi|317489756|ref|ZP_07948255.1| hypothetical protein HMPREF1023_01954 [Eggerthella sp. 1_3_56FAA]
 gi|316911102|gb|EFV32712.1| hypothetical protein HMPREF1023_01954 [Eggerthella sp. 1_3_56FAA]
          Length = 312

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/141 (11%), Positives = 43/141 (30%), Gaps = 1/141 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   ++R      D    L+++   +R+GL      A+        +            
Sbjct: 156 VKRAQRERADGLESDLSEMLEVVALGLRSGLSFDRGFALYGSHFDSDLARACVGAQHAWS 215

Query: 61  LG-LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           LG  +  +++  +         +     +    + G +L+E L + +   R     + + 
Sbjct: 216 LGLTNREDALRDLAASYDSPLFARVVESMVRSLRFGSSLAEGLESAAAEARAVHRAQVEE 275

Query: 120 QALSMEAKASAWIIGSLPFCV 140
           +      K        +   +
Sbjct: 276 RVAKAPVKMMVPTGTLILPAM 296


>gi|298487498|ref|ZP_07005542.1| General secretion pathway protein F [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158013|gb|EFH99089.1| General secretion pathway protein F [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330987893|gb|EGH85996.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 400

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
               +    +   + AG P+  ++ +++ Q      ++   R+ E    G  LS ++   
Sbjct: 62  AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEE 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    S     +    + GG L   L  LS  L   + ++ +V    +      ++
Sbjct: 122 GTQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +  +   ++ L+ +  P ++ +  +   G  +  +    + +G  +
Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGQFL 217


>gi|291303312|ref|YP_003514590.1| type II secretion system protein [Stackebrandtia nassauensis DSM
           44728]
 gi|290572532|gb|ADD45497.1| type II secretion system protein [Stackebrandtia nassauensis DSM
           44728]
          Length = 220

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 58/144 (40%), Gaps = 4/144 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P ALD+    + +G P+  A++      +  + + FRR   +  LG +L+E+   +  +
Sbjct: 79  LPFALDVFAACLHSGAPLDRALSTCAEAVNPALANRFRRAARSLTLGATLAEA---LTEF 135

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII-G 134
             L +       I   +  G  L+++L  L++ LR  +   A   A          +   
Sbjct: 136 DSLADGHRLVQTIGRSADTGARLADSLHLLAKELRFDREQAALSHAHRAGVWMVLPLCLC 195

Query: 135 SLPFCVSTLVYFTSPGYMNVLIND 158
            LP  ++  +       ++ ++N 
Sbjct: 196 FLPAFIAAGLLPVVISSLDGILNT 219


>gi|153950854|ref|YP_001399939.1| general secretion pathway protein F [Yersinia pseudotuberculosis IP
           31758]
 gi|152962349|gb|ABS49810.1| general secretion pathway protein F [Yersinia pseudotuberculosis IP
           31758]
          Length = 400

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 62/207 (29%), Gaps = 34/207 (16%)

Query: 5   IKKRTAKFLD----------DFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFR 53
           IKKR   F            D       I   V A +P+ + + ++  Q S   +    +
Sbjct: 42  IKKRILLFNKYVVKKNSNKTDLVLITRQIATLVNASMPLDEVLDIVGKQNSKSKMIEIIQ 101

Query: 54  RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
           R+      G S ++++S           S     +    ++ G+L   L  L+  +   +
Sbjct: 102 RIRVNIQEGHSFADALSPFPA-----VFSPLYKTMVTAGEVSGHLGLVLVRLAEHIEQTQ 156

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML--------- 164
            ++ K+    +       ++      +  L+    P  +           L         
Sbjct: 157 KIQRKIIQALIYP---CVLVLISLSVIVILLTAVVPNIVEQFSFSETALPLSTKVLMILS 213

Query: 165 ------LGVAAAFMLIGIMVMRLMINF 185
                 +    A  +  ++ +  ++  
Sbjct: 214 YSIKENVIFIIAIGVSAVIFLNRLLKI 240


>gi|313893588|ref|ZP_07827157.1| type II secretion system protein F domain protein [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313441859|gb|EFR60282.1| type II secretion system protein F domain protein [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 391

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/177 (11%), Positives = 59/177 (33%), Gaps = 14/177 (7%)

Query: 1   MKHLIKKRTAKFLDDFP-NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           +   ++K+  K+      +    +   + +G+P+  A+ ++       + +     IE  
Sbjct: 42  ISLQVEKKKHKWNHAMVVDVTYQLGLLIESGVPLRRALQLLCQGKRGLLYTALYESIERG 101

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                       + + +  +     +  +    +  G L E+L  +SR     + ++ KV
Sbjct: 102 QT----------LSQALRSEGCPAIALALLESGEAAGTLGESLQYISRHYDWERQLRQKV 151

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            +         +++  +       + F  P +  V         L+  A   +  G+
Sbjct: 152 MSAISYPI---FLLLMMNVFFLVTILFIIPSFEKVFTTMHITLPLMTRALFALGQGL 205


>gi|152968689|ref|YP_001333798.1| type IV pilin biogenesis protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150953538|gb|ABR75568.1| component in type IV pilin biogenesis, transmembrane protein
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 401

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 46/156 (29%), Gaps = 4/156 (2%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
             +  +   ++AGLP+++ ++++  Q S          +  +                  
Sbjct: 62  ETIRQLATLLQAGLPLAEGLSLLAQQQSHAQWQALLEALGRELAQG----VAFSAALAQW 117

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            Q        +    +L G L      L+   ++++ + +KV+           +   + 
Sbjct: 118 PQAFPPLYLAMISTGELTGKLDICCLQLANQQQEQQRLASKVKKALRYPLIVLSLALLVV 177

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             +   V                    + VAA  ML
Sbjct: 178 LGMLYFVLPEFTAIYQTFSTPLPLLTRMVVAAGDML 213



 Score = 38.6 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 39/136 (28%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
                   I+  +  AG+     +  +    S    R    +       G  + +++SR 
Sbjct: 261 QQLSLIFTILALTQSAGISFLQGLQSVEESLSCPLWRQRLAQARALIVQGEPIWQALSRC 320

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             + P          +    +  G L + L NL+   R +   +A   A  +E       
Sbjct: 321 GGFTP------LCLQLIRTGESAGALDQMLENLAHHHRQQTYQRADSLAAHLEPMMLVIT 374

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V  +     
Sbjct: 375 GSLVGILVVAMYLPVF 390


>gi|160896747|ref|YP_001562329.1| type II secretion system protein [Delftia acidovorans SPH-1]
 gi|160362331|gb|ABX33944.1| type II secretion system protein [Delftia acidovorans SPH-1]
          Length = 405

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 59/183 (32%), Gaps = 8/183 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQH 60
           + L K R     DD       +   +RAGL + +A+ V+V  S         + V+++  
Sbjct: 56  RALKKGRIKA--DDIQGMTTELAIMMRAGLSLDNALKVLVEMSHKVQMQAMLQSVLDSVK 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ LS+++ +            F   +    +  G +S  L  L   +  ++ ++  V 
Sbjct: 114 AGMPLSQALGKHHDLFGD-----FYINMVRSGEASGQMSGVLNRLVEHMARQRALRDSVV 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           + ++       +       +   V        N + +         +             
Sbjct: 169 SATIYPAILLGVAVLSLVAMLGFVVPQFEQLFNDMGDALPLPTQFVMGLGHAFRSYGWAV 228

Query: 181 LMI 183
            ++
Sbjct: 229 FIV 231



 Score = 34.3 bits (77), Expect = 6.9,   Method: Composition-based stats.
 Identities = 15/133 (11%), Positives = 36/133 (27%), Gaps = 5/133 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                   +   +  G+ +  A+ +     S+    E         +G  + E       
Sbjct: 270 QLTLFSRSLGTLLGNGVTLLTALRIASDTVSNVAIRERLE-----KMGPMVKEGHRMAHA 324

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                E    +  +    +  G L + +  LS IL        K     +E      +  
Sbjct: 325 AQKTGEFEPLALNLVRVGEETGRLGDMMLELSNILNREVENAIKRLLTMLEPALILVLGI 384

Query: 135 SLPFCVSTLVYFT 147
            +   + +++   
Sbjct: 385 LIASIIVSILLGI 397


>gi|187476846|ref|YP_784870.1| general secretion pathway protein F [Bordetella avium 197N]
 gi|115421432|emb|CAJ47937.1| general secretion pathway protein F [Bordetella avium 197N]
          Length = 397

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/162 (12%), Positives = 53/162 (32%), Gaps = 6/162 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISR 71
             D       +   + A LP+  A+ + + Q+     +     V +    G  LS +++ 
Sbjct: 57  DADLAWLTRQLASLLAASLPLDAALTITLEQAEKRHIATTLTGVRDDVRAGHKLSSALAS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             R     +       +    +  G+LS+ +  L+  + +R  +++KV    +       
Sbjct: 117 RPR-----DFPEIYRALIGAGEESGDLSQVMEKLAHYIEERNALRSKVLTAFIYPVVVGA 171

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           +   +   +   V        +           + +A +  +
Sbjct: 172 VSVLIVIFLLGYVVPQVVSAFSHAKQQLPLLTRIMLALSDYV 213



 Score = 35.5 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 39/130 (30%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESISRMVRYMP 77
               +     +G+P+  A+       ++ V     +          SLS +++R      
Sbjct: 266 FASTLAILCGSGVPILAALDAARRTMTNDVLRTAVQEAAEHVGKGASLSGALAR------ 319

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +        +    +  G L E L   +R L      +A      +E      + G + 
Sbjct: 320 RKVFPPILIHLVASGEKTGQLPELLDQCARNLSRDLERRALAMTALLEPALILVMGGLVL 379

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 380 LIVLAVMMPI 389


>gi|238893085|ref|YP_002917819.1| type IV pilin biogenesis protein [Klebsiella pneumoniae NTUH-K2044]
 gi|238545401|dbj|BAH61752.1| type IV pilin biogenesis transmembrane protein [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 401

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 46/156 (29%), Gaps = 4/156 (2%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
             +  +   ++AGLP+++ ++++  Q S          +  +                  
Sbjct: 62  ETIRQLATLLQAGLPLAEGLSLLAQQQSHAQWQALLEALGRELAQG----VAFSAALAQW 117

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            Q        +    +L G L      L+   ++++ + +KV+           +   + 
Sbjct: 118 PQAFPPLYLAMISTGELTGKLDICCLQLANQQQEQQRLASKVKKALRYPLIVLSLALLVV 177

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             +   V                    + VAA  ML
Sbjct: 178 LGMLYFVLPEFTAIYQTFSTPLPLLTRMVVAAGDML 213



 Score = 38.6 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 39/136 (28%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
                   I+  +  AG+     +  +    S    R    +       G  + +++SR 
Sbjct: 261 QQLSLIFTILALTQSAGISFLQGLQSVEESLSCPLWRQRLAQARALIVQGEPIWQALSRC 320

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             + P          +    +  G L + L NL+   R +   +A   A  +E       
Sbjct: 321 GGFTP------LCLQLIRTGESAGALDQMLENLAHHHRQQTYQRADSLAAHLEPMMLVIT 374

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V  +     
Sbjct: 375 GSLVGILVVAMYLPVF 390


>gi|170696831|ref|ZP_02887931.1| type II secretion system protein [Burkholderia graminis C4D1M]
 gi|170138259|gb|EDT06487.1| type II secretion system protein [Burkholderia graminis C4D1M]
          Length = 372

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 59/147 (40%), Gaps = 5/147 (3%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHLGLSLSE 67
             +D+ P  +D++      GL +  ++ V+V         + SE          G +  +
Sbjct: 219 AVVDELPMLVDLLRLLQGVGLSLDQSLQVMVNDFRGVLPVLASELEIAQGQFAAGRTREQ 278

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           S+SR+      +++     ++    + GG + E L      LR+ +    + +   M  K
Sbjct: 279 SLSRLASSFDNEDLRAVVRLLIQVDRHGGAVQEPLKQFGDRLRETRRAMLRERIGRMAVK 338

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNV 154
            +  +I +L   +  ++    PG M+V
Sbjct: 339 MTGVMILTLLPAL--MIVTAGPGVMSV 363


>gi|219856774|ref|YP_002473896.1| hypothetical protein CKR_3431 [Clostridium kluyveri NBRC 12016]
 gi|219570498|dbj|BAH08482.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 298

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 64/177 (36%), Gaps = 2/177 (1%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSE 67
                 +   AL I+  +      +  AV   +   + PV   F+  +    L    + E
Sbjct: 117 KKDIAAELETALSIVTTAYLRSENILTAVEENLHYLNPPVHQVFKDFVLRVKLIDPDVLE 176

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +I  +   +  +    +   +        +L   L  +   L D + +  +++ L  E +
Sbjct: 177 AIKVLRTKIDNEVFREWCDALCDCQH-DRSLKVTLTPIVSKLSDMRIVNGELEYLVFEPR 235

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
               I+         L+Y  +  + + L++ P G ++L ++AA + +    +  +  
Sbjct: 236 KEFIIMVIFVIGNIPLMYLLNKSWYDTLMHTPLGQIILAISAALIFVSTACVLKLTK 292


>gi|330958211|gb|EGH58471.1| type II secretion system protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 400

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
               +    +   + AG P+  ++ +++ Q      R+   R+ E    G  LS ++   
Sbjct: 62  AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGKPLSVALEEE 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    S     +    + GG L   L  LS  L   + ++ +V    +      ++
Sbjct: 122 GSQ-----FSPLYISMVRAGEAGGALEGTLRQLSDYLERSQLLRGEVINALIYPA---FL 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +  +   ++ L+ +  P ++ +  +   G  +  +    + +G  +
Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILDLGQFL 217


>gi|266623926|ref|ZP_06116861.1| putative bacterial type II secretion system protein F domain
           protein [Clostridium hathewayi DSM 13479]
 gi|288864258|gb|EFC96556.1| putative bacterial type II secretion system protein F domain
           protein [Clostridium hathewayi DSM 13479]
          Length = 350

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 55/181 (30%), Gaps = 21/181 (11%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
            +       I   +RA +P+ + ++V+    + +  +     + E   LG   S  +  +
Sbjct: 12  RELSAFCLQISLLLRAAIPLDEGLSVMAEDAADEEEKKILLHMSEEVELGSPFSAVLQEV 71

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                      +   ++   +  G L + +A+LS        +   ++          ++
Sbjct: 72  G------SYPSYVIKMAKLGEETGTLDQMMASLSEYYEKEYILMKSIKNAVTYPIIMIFM 125

Query: 133 IGSLPFCVSTLVYFTSPGYMNV--------------LINDPRGHMLLGVAAAFMLIGIMV 178
           +  + F + T V                        L     G  L       ++ GI+ 
Sbjct: 126 LLVVLFVLFTKVMPIFESVYEQLGARLSPVSMAATRLGGMFSGVALAAGVLLAVVAGIIW 185

Query: 179 M 179
           +
Sbjct: 186 L 186


>gi|119472774|ref|ZP_01614711.1| putative general secretion pathway protein F [Alteromonadales
           bacterium TW-7]
 gi|119444733|gb|EAW26038.1| putative general secretion pathway protein F [Alteromonadales
           bacterium TW-7]
          Length = 411

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/172 (11%), Positives = 50/172 (29%), Gaps = 6/172 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
             +       +   +++ LPV  AV  +  Q     ++     V      G +L++ +S 
Sbjct: 70  TSELALITRQLATLIQSALPVEGAVMAVAEQCEKPRLKRMLMSVRSKVVEGYTLADGMSE 129

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    +  G+L + L  L+     R++M++++    +       
Sbjct: 130 FP-----HVFDDLYRSMVAAGEKSGHLDQVLNRLADYTEQRQHMRSQITQAMVYPTILVI 184

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
               +   +   V                      +A +  +     + L+ 
Sbjct: 185 FAIGIVSVLLGTVVPKILKTFEKTKQVLPWTTEWVMAGSHFVQNYWFISLLA 236


>gi|326943832|gb|AEA19722.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 316

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 65/175 (37%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +  K+      +     L+ +  ++ A    S A+  I+     P++ +    +     G
Sbjct: 124 YKKKRYELYVEEQLMLYLNSLANAMSAYENPSFAIKSILPLMQSPIKEDVENCLIVHLEG 183

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S+ ES   ++     + +  F  ++ + S+ G +    L  ++   + +K  KAK++A 
Sbjct: 184 TSIKESFEPLINKYKYKNLKLFHDMLDLISKTGKDEDGLLMRIADEFQQKKIYKAKLKAG 243

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
               ++S   I  +      +    +          P G ++L +     +I  +
Sbjct: 244 MEPKRSSFKKIAIMTASFPFMFLAVTADDYIAFAGTPTGKIILTLMILVNIICAV 298


>gi|302335344|ref|YP_003800551.1| Type II secretion system F domain protein [Olsenella uli DSM 7084]
 gi|301319184|gb|ADK67671.1| Type II secretion system F domain protein [Olsenella uli DSM 7084]
          Length = 213

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 53/132 (40%), Gaps = 1/132 (0%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMV 73
           + P  LD++   + AGL    ++ +        + SEF   + +  +  +   +++  + 
Sbjct: 71  ELPTMLDVVNLGLSAGLSFDASLELYCDNYETELSSEFGGALLSWRVGAVGRGDALLGLA 130

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
             + L  +  FST +    + G  L+E L   S ++R+ +  + + +   +  +    + 
Sbjct: 131 ERLDLAALRTFSTSVVQALEFGSPLAEVLERQSEVIREEQRSQVEEEIEKVPVRMLIPLG 190

Query: 134 GSLPFCVSTLVY 145
             +   +   + 
Sbjct: 191 TLIVPAMLVAIL 202


>gi|295395523|ref|ZP_06805717.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971542|gb|EFG47423.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 277

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 64/169 (37%), Gaps = 5/169 (2%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77
            +D  V+ ++ G+  + A+ ++     + V     R+V     LG    +++      + 
Sbjct: 106 VIDWAVQLLKVGIEPARAMTLVADLPDNEVVERVLRKVARAMELGEKPDQALRMYAGELG 165

Query: 78  LQEVSF---FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            ++       ++V  V  Q G   +E LA+ +   RDR +   +         ++  ++ 
Sbjct: 166 DEDARILTGMASVWFVSEQAGAPAAEMLASYASTCRDRADAMRERDVALAGPISTVMVLS 225

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            LP     L        +  L+    G + +      ++ G + MR M+
Sbjct: 226 WLPIMSLGLAVLVGADLVE-LVTSVPGALSICGGLVLLVAGRIWMRSML 273


>gi|289648896|ref|ZP_06480239.1| general secretion pathway protein F [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 400

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
               +    +   + AG P+  ++ +++ Q      ++   R+ E    G  LS ++   
Sbjct: 62  AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEE 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    S     +    + GG L   L  LS  L   + ++ +V    +      ++
Sbjct: 122 GTQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +  +   ++ L+ +  P ++ +  +   G  +  +    + +G  +
Sbjct: 174 VIGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGQFL 217


>gi|297564239|ref|YP_003683212.1| Type II secretion system F domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296848688|gb|ADH70706.1| Type II secretion system F domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 236

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 56/159 (35%), Gaps = 6/159 (3%)

Query: 2   KHLIKKRTAKF--LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           +     R+ +     D P  + ++   +RAG  V   +  +   +   +  E   V E  
Sbjct: 80  RRSAGSRSQRLPVTADLPVVIGLLASGIRAGATVPACLTAVSRATRGRLGEELAAVAEQL 139

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            LG + +E+  R     PL  V      ++  +  G  +++ L   +  LR     +   
Sbjct: 140 RLGAAPAEAWRRPALPEPLVPVGRD---LARAADTGAPVADLLDRHAVDLRRTLRARGTA 196

Query: 120 QALSMEAKASAWI-IGSLPFCVSTLVYFTSPGYMNVLIN 157
           +   +     A + +  LP  V   +   +   ++  + 
Sbjct: 197 RLERLGVLVVAPLGLCFLPAFVLIGIVPMAAELLSRALG 235


>gi|134294664|ref|YP_001118399.1| type II secretion system protein [Burkholderia vietnamiensis G4]
 gi|134137821|gb|ABO53564.1| type II secretion system protein [Burkholderia vietnamiensis G4]
          Length = 404

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/165 (10%), Positives = 44/165 (26%), Gaps = 6/165 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   ++AGLP++ ++ ++   ++ D +      +      G  L+ ++ R
Sbjct: 64  TRDVTRFTRQLASLLQAGLPLAPSLEMLARTRTRDGMPRIAAGLAREIVGGQRLAVALGR 123

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    +  G L   L  ++           K +       A   
Sbjct: 124 YPAQFG-----TLYRQLIEVGEASGALGTVLTRVAEHRERADAQWRKARVALTYPVAVIA 178

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
              ++   +   V  T     +             +A +      
Sbjct: 179 FALAISAALMVWVVPTFRQIFDGFGAALPAPTRALLAVSSATSAW 223



 Score = 37.4 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 41/130 (31%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+P++DA A +              ++      G+ L++++     +  
Sbjct: 274 WCRSLATLLGAGVPLADAFATLERASGHPVFERATEQIAARVLRGVRLADAMHAAGCFPD 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                         ++  G L   LA+++ +   + + +    A   E      +   + 
Sbjct: 334 DVVQP------IAVAEETGALDTMLADIASLCERQLDARLDALAALGEPLIVIVLGALVG 387

Query: 138 FCVSTLVYFT 147
             V  +    
Sbjct: 388 ALVIAMYLPI 397


>gi|284045233|ref|YP_003395573.1| type II secretion system F domain protein [Conexibacter woesei DSM
           14684]
 gi|283949454|gb|ADB52198.1| Type II secretion system F domain protein [Conexibacter woesei DSM
           14684]
          Length = 281

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 66/185 (35%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++   +     P     I  ++ AG  V  A+      +     +E         
Sbjct: 95  LHQRRRRYRVELERAAPAVARAIADALGAGHAVPGALVEAARGAEGAAAAELGAAAAALR 154

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G   +  + R+      +        I +Q + GG+L+  L  L+    +   +    +
Sbjct: 155 MGQPTAAVLERLRARADSRPYDTLVAAILLQREAGGDLATLLRELAAAQEESMRLLDDAR 214

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A + +A+ +  ++G +P   + L     PG + ++   P    L G A     + ++ +R
Sbjct: 215 ATTAQARFTGLVVGVMPIGAAALAELARPGALAMVAQVPLAAWLAGFAFFLQAVALVAIR 274

Query: 181 LMINF 185
            +   
Sbjct: 275 RLARV 279


>gi|116671913|ref|YP_832846.1| hypothetical protein Arth_3371 [Arthrobacter sp. FB24]
 gi|116612022|gb|ABK04746.1| hypothetical protein Arth_3371 [Arthrobacter sp. FB24]
          Length = 276

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/189 (12%), Positives = 56/189 (29%), Gaps = 23/189 (12%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVI-----VGQSSDPVRSEFRRVIETQHLGLSLSESISRM- 72
            +  +   ++ G   S     +     V + S     E   +       +S++ + +   
Sbjct: 82  VVQQLAALLKGGRTPSRLWDELWMVYSVEEPSGSGPREEPGLTAGSLSMVSVARAAALRG 141

Query: 73  -----------------VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                             +    +     +    + +  G  L++ L  L+  L    + 
Sbjct: 142 SPVAEAIRAAAAAAFPGSQNRERRIWGELAACFDIAAASGCPLADVLTRLAAQLEAEDDA 201

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           +A  Q      KA+  ++  LP     L        +++L+  P G   L       + G
Sbjct: 202 EAARQTALAGPKATVTLLTWLPLLGLGLGVALGVDPLSILLGTPFGMAALAAGVGLTVAG 261

Query: 176 IMVMRLMIN 184
            +    ++ 
Sbjct: 262 RIWSARLVR 270


>gi|329298069|ref|ZP_08255405.1| type IV pilin biogenesis protein [Plautia stali symbiont]
          Length = 165

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/151 (11%), Positives = 52/151 (34%), Gaps = 9/151 (5%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESISRMVRYMPL 78
           +  +   ++AGLP+++++ ++              +++ + +     S+++       P 
Sbjct: 1   MRQLATLLKAGLPLAESLTLLASGHPHAGWRVLLSLLQQRVMAGEPFSQALRAWPDIFPP 60

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +        +    +L G L E    L+     ++ ++ KV           +I+     
Sbjct: 61  R-----FPALMQVGELTGQLDECCRQLALQQSRQQFLRQKVVKTLRYPL---FILLVALA 112

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
             + ++ F  P ++ V  +            
Sbjct: 113 VSAGMLLFVLPEFVAVYASFDAPLPAFTAGV 143


>gi|222447018|pdb|3C1Q|A Chain A, The Three-Dimensional Structure Of The Cytoplasmic Domains
           Of Epsf From The Type 2 Secretion System Of Vibrio
           Cholerae
 gi|222447019|pdb|3C1Q|B Chain B, The Three-Dimensional Structure Of The Cytoplasmic Domains
           Of Epsf From The Type 2 Secretion System Of Vibrio
           Cholerae
          Length = 123

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 6/110 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   V++G P+ + +  +  QS    +R+    V      G +LS+S+    
Sbjct: 13  DLALITRQLATLVQSGXPLEECLRAVAEQSEKPRIRTXLVAVRAKVTEGYTLSDSLGDYP 72

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
                              +  G+L   L  L+    +R+  ++K+Q  S
Sbjct: 73  -----HVFDELFRSXVAAGEKSGHLDSVLERLADYAENRQKXRSKLQQAS 117


>gi|87120707|ref|ZP_01076600.1| general secretion pathway protein F [Marinomonas sp. MED121]
 gi|86163935|gb|EAQ65207.1| general secretion pathway protein F [Marinomonas sp. MED121]
          Length = 400

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 54/159 (33%), Gaps = 6/159 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AGLP+ +A+     Q + + +RS    +      G SL+E+++   +  P
Sbjct: 66  MTRQLATLIDAGLPIEEALTGGAQQATKNKIRSMLLSIRSKVMEGHSLAEALASYPKAFP 125

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +              +  G+L   L  L+     +K    K+Q   M       +   + 
Sbjct: 126 I-----LFRASVEAGEQSGHLHAVLMQLADFTERQKQNAQKIQMAMMYPAILTLVAIGIV 180

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
             +   V        +    +  G     ++ + ++ G 
Sbjct: 181 SFLLGSVMPDIVQVFDTQGAELPGITQFMLSLSNLITGY 219


>gi|297748700|gb|ADI51246.1| General secretion pathway protein F [Chlamydia trachomatis D-EC]
 gi|297749580|gb|ADI52258.1| General secretion pathway protein F [Chlamydia trachomatis D-LC]
          Length = 425

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/193 (12%), Positives = 59/193 (30%), Gaps = 15/193 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           ++ + ++       +       +V  +R+G+ + DA+  +  Q     +      ++E  
Sbjct: 76  IRKVRERNYRVTTTELVIFTKQLVLLLRSGISLYDALTSLRDQYQGRALAGVLTSLMEAL 135

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G   SE+++R            F        +  GNL  AL N+ ++L +++ +   +
Sbjct: 136 RSGGVFSEALARFP-----HIFDSFYQNSVRSGESIGNLEGALMNIIKVLEEKEKLSKSL 190

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG---------VAAA 170
            A             ++       V  T       +        +               
Sbjct: 191 AAALSYPVILLVFSCAVVVFFLIGVIPTLKETFEDMEMTRLTKAVFSCSTWFCRYKFLVL 250

Query: 171 FMLIGIMVMRLMI 183
              IG  +   ++
Sbjct: 251 LGGIGGAISLRIV 263


>gi|256829538|ref|YP_003158266.1| type II secretion system protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256578714|gb|ACU89850.1| type II secretion system protein [Desulfomicrobium baculatum DSM
           4028]
          Length = 401

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 46/161 (28%), Gaps = 7/161 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             D           + AG+P+  A+ ++  Q+ +P        +     G S        
Sbjct: 61  DRDMVVFSRQFATMINAGVPILQALQIMCEQTENPKLRRKLYAVRNDIEGGS----SLYE 116

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                        + +    + GG L + L  L+  +     +KAK++   +       +
Sbjct: 117 ALKKHPDIFDALYSNMVNAGETGGILDQVLIRLAEYIEKAAKLKAKIKGAMIYPGVVVTV 176

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             ++   +   V    P +  +         L       M 
Sbjct: 177 AVAVIAVILIFVI---PTFEQMFTESGGALPLPTQIVINMS 214



 Score = 41.3 bits (95), Expect = 0.069,   Method: Composition-based stats.
 Identities = 13/130 (10%), Positives = 38/130 (29%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   V +G+P+ +A+ ++   +S     E   +   + +    S +          
Sbjct: 270 FSRTLATMVSSGVPILNALDIVSR-TSGNKTVEKGVLEAKKSIAEGQSLAEP----LDDT 324

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G L   L  ++    D  ++        +E     ++   +  
Sbjct: 325 GVFPPMVIHMIAIGETTGALDSMLTKIADFYDDEVDVAVDALTSLIEPIMIVFLGVVVGG 384

Query: 139 CVSTLVYFTS 148
            V ++     
Sbjct: 385 LVISMYLPIF 394


>gi|206561783|ref|YP_002232548.1| type IV pilus assembly protein PilC [Burkholderia cenocepacia
           J2315]
 gi|198037825|emb|CAR53769.1| type IV pilus assembly protein PilC [Burkholderia cenocepacia
           J2315]
          Length = 401

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 44/138 (31%), Gaps = 6/138 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   ++AGLP++ ++ ++   ++ D V      +      G   +++++R      
Sbjct: 67  FTRQLASLLQAGLPLAPSLEMLARTRTRDGVPRIAAGLAREIVGGRRFADALARYPSQFG 126

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G+L   L  ++           K++A      A      ++ 
Sbjct: 127 -----TLYRQLIEVGEASGSLGIVLTRVAEHRERADAQWRKLRAALAYPAAVILFALAIS 181

Query: 138 FCVSTLVYFTSPGYMNVL 155
             +   V  T     +  
Sbjct: 182 AALMVWVVPTFRQIFDGF 199



 Score = 37.4 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 40/130 (30%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+P++DA A +   +           +      G+ L++++     +  
Sbjct: 271 WCRSLATLLGAGVPLADAFATLERTAGHPVFAHATAHIAARVLRGVRLADAMHSAGCFPD 330

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                         ++  G L   L +++ +   + + +    A   E      +   + 
Sbjct: 331 DVVQP------IAVAEETGALDSMLGDIAALCERQLDARLDALAALGEPLIVIVLGALVG 384

Query: 138 FCVSTLVYFT 147
             V  +    
Sbjct: 385 GLVIAMYLPI 394


>gi|302521144|ref|ZP_07273486.1| integral membrane protein [Streptomyces sp. SPB78]
 gi|318062248|ref|ZP_07980969.1| integral membrane protein [Streptomyces sp. SA3_actG]
 gi|318080604|ref|ZP_07987936.1| integral membrane protein [Streptomyces sp. SA3_actF]
 gi|302430039|gb|EFL01855.1| integral membrane protein [Streptomyces sp. SPB78]
          Length = 312

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 64/156 (41%), Gaps = 4/156 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   + +           LD++  S+  G  + +A+      S        R  ++   
Sbjct: 158 IRRDAQDKRRDLRRVIGAYLDLVAMSLAGGRGLPEALLAAAEVSDGWASRRIRDALQDAR 217

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           +   +   ++ R+   + ++E+   S+ +++ +  G  + E+LA+ +  +R R+  + + 
Sbjct: 218 ITGHTQWYALGRLGEELGIEELKELSSSLALVADDGAKVRESLASRAETMRHRELAEIE- 276

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
              S   K+ + +I  L  C   LV+   P  M V 
Sbjct: 277 --GSAGEKSQSMLIAQLLLCAGFLVFLIFPAAMRVF 310


>gi|308271306|emb|CBX27914.1| hypothetical protein N47_G32380 [uncultured Desulfobacterium sp.]
          Length = 411

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 63/188 (33%), Gaps = 19/188 (10%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISR 71
            +D  N    +   +R+G+ +  A  +++  +      E   R+I     G  ++++   
Sbjct: 72  DEDMYNIAREMSTLLRSGMRIDKAFDILIHATEKQDLREVLLRIIADIKAGKGVAQAFDN 131

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             R+ P          +   S+  G L EA  N++R LR +   +A+V+          +
Sbjct: 132 TGRFGP------LVISMIHVSEAVGELREAFENIARYLRFQIQFRAEVRNAMSYPAFLVF 185

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLIN------------DPRGHMLLGVAAAFMLIGIMVM 179
             G   F +   +                             +       A +++G +V+
Sbjct: 186 ASGVTFFVIFQFIVPRFFSIFGPQGTRLPLPAKALYAISGWFNFTSIGIMAGLVVGFLVL 245

Query: 180 RLMINFDV 187
           R +    +
Sbjct: 246 RRLNPVKI 253


>gi|303233432|ref|ZP_07320101.1| type II secretion system F domain protein [Atopobium vaginae
           PB189-T1-4]
 gi|302480561|gb|EFL43652.1| type II secretion system F domain protein [Atopobium vaginae
           PB189-T1-4]
          Length = 229

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 58/141 (41%), Gaps = 1/141 (0%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-S 64
           +KR    L   P  LD+++  + AGL    ++ +        +   F  V+  + LG+ S
Sbjct: 80  QKRRMVCLQQLPVLLDVVILGLSAGLSFDASLDLYCSHYQGALADAFSAVMLQERLGIVS 139

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             E++ ++ + M L  +S F + +    + G  L   LA  +  +RD +  + + Q   +
Sbjct: 140 KREALLKLDQDMKLDALSRFISSVVQALECGSPLVHILAGQAEAIRDAQRSELEEQIEKV 199

Query: 125 EAKASAWIIGSLPFCVSTLVY 145
             K    +   +   +   + 
Sbjct: 200 PVKMLIPMGTLIVPAMLISIV 220


>gi|237733725|ref|ZP_04564206.1| type II secretion system protein [Mollicutes bacterium D7]
 gi|229383323|gb|EEO33414.1| type II secretion system protein [Coprobacillus sp. D7]
          Length = 397

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 60/167 (35%), Gaps = 13/167 (7%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            +  N    I   + +GLP+   V+++   + +  +++ +  +      G +LS+++   
Sbjct: 58  KELANFCREIGTMMNSGLPLIRTVSILASREDNKKLKAIYNDIYVKLQQGQTLSDALKEQ 117

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +  P          +    +  GN+ + +  L+    +   +K KV++          +
Sbjct: 118 GKAFP-----DILIQMVRSGEASGNMQDTMMVLNNQFTNDNKIKNKVKSAMTYPV---IL 169

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
                  +  +     P + ++      G  L  +    ++I   +M
Sbjct: 170 GIVTIVVLLIVYTAVLPSFFSMF----EGMELPLITEINIIISKFIM 212


>gi|117918875|ref|YP_868067.1| type II secretion system protein [Shewanella sp. ANA-3]
 gi|117611207|gb|ABK46661.1| type II secretion system protein [Shewanella sp. ANA-3]
          Length = 423

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/172 (9%), Positives = 51/172 (29%), Gaps = 8/172 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMV 73
           D       I   + AG+P+   + ++          E    ++     G+ LS+S+    
Sbjct: 83  DIAMITRQIATMLAAGVPLVTTIELLGRGHEKAKMRELLGSILSEIQSGIPLSDSLR--- 139

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +        +    +  G+L      ++      + +K+K++       A   + 
Sbjct: 140 --PHRRYFDDLYVDLVAAGEHSGSLDVVFDRIATYREKSEALKSKIKKAMFYPAAVVVVA 197

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183
             +   +   V             +      ++L ++        + +  ++
Sbjct: 198 ILVTTLLLLFVVPQFEEIFKGFGAELPAFTQLVLHISRGLQSSWYIFLGAIV 249


>gi|66047622|ref|YP_237463.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           B728a]
 gi|63258329|gb|AAY39425.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           B728a]
          Length = 294

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 68/157 (43%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  + ++R  + + +    + ++     +G+ V  A+ V+  +       +  E R V+ 
Sbjct: 134 LAAVARRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLM 193

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL L E + +    + + E+S    +++     GG   ++L  L +++ DR+  + 
Sbjct: 194 RVDSGLELGEELRKTAALLDVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 253

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +     + AK S  ++  L   +  ++    PG+M +
Sbjct: 254 QEYISKLSAKMSVVMMVFLFPALLIVL--AGPGFMAI 288


>gi|217076182|ref|YP_002333898.1| type II secretion system protein [Thermosipho africanus TCF52B]
 gi|217036035|gb|ACJ74557.1| type II secretion system protein [Thermosipho africanus TCF52B]
          Length = 398

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 27/186 (14%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQHLGLSLSESISR 71
            D       +   V+AGL + +A+ ++  Q   S   RS    ++    +G SLSE+  +
Sbjct: 60  KDIVFFTRQLETMVKAGLRLREAIYILSNQEIFSKRFRSILVNIVSELDVGTSLSEAFKK 119

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                  +        +    + GG L E L  L+    +      +V++  +      +
Sbjct: 120 ------QKAFDDVFINMIKAGEEGGVLEETLEKLASYYENLNRTNQQVKSAMVYPT---F 170

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM----------------LLGVAAAFMLIG 175
           I+G     V  +  F  P   NV    P G +                ++      +L+G
Sbjct: 171 ILGFAVIVVVVISVFILPKLFNVFGTIPTGGIISFLISVNKVVTGNPFMVAFVIISLLVG 230

Query: 176 IMVMRL 181
           + +   
Sbjct: 231 MFLFLR 236



 Score = 38.6 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 17/146 (11%), Positives = 46/146 (31%), Gaps = 9/146 (6%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLG 62
           LI+K   K   +           + +G+ + D++ +    S++       + V E    G
Sbjct: 253 LIRKLQEKITYE--RFCRTFGVLIASGVSIIDSLEMAAKASNNLKFIMKIKNVSEKVKSG 310

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            +L +++         +        +    +  G L   +  ++    ++     K    
Sbjct: 311 STLKQALKS------EKVFPQIIYEMIGTGEETGKLDTIMEKVADFFDEQIQQDTKKLLS 364

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTS 148
            +E    A++   + F    +     
Sbjct: 365 MLEPLMIAFVGLFIAFLAYAMYSTIF 390


>gi|219669573|ref|YP_002460008.1| type II secretion system protein [Desulfitobacterium hafniense
           DCB-2]
 gi|219539833|gb|ACL21572.1| type II secretion system protein [Desulfitobacterium hafniense
           DCB-2]
          Length = 401

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/202 (12%), Positives = 56/202 (27%), Gaps = 27/202 (13%)

Query: 1   MKHLIKKRT--AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           +  L+ KR       +        +   VR+G  +   + V+  Q  D    E   +I  
Sbjct: 47  LNALLNKRIMTKVKYESISAFCSQLAMMVRSGANLVRGLEVLKLQLEDKELQEVLEIIVR 106

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
                                 +      +    +  GNL   L +++        ++ K
Sbjct: 107 GVSRGD----SLSQAMRDCRGALPDLLINLVAVGEESGNLESVLTSMAEYYDRENYIRKK 162

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML-------------- 164
           VQ+ S+       ++  L   +   + F  P    +L    +   L              
Sbjct: 163 VQSASIYPV---ILLTVLIGIIFFFMNFLLPEITGMLTESGQSLPLPTRMIINTADFFSN 219

Query: 165 ----LGVAAAFMLIGIMVMRLM 182
               L      ++ G+  +  +
Sbjct: 220 YGIYLLAGLIGLVFGLNWLFKI 241


>gi|308234328|ref|ZP_07665065.1| Type II secretion system F domain protein [Atopobium vaginae DSM
           15829]
          Length = 144

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 54/133 (40%), Gaps = 1/133 (0%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRM 72
            + P  LD+I   + +GL    ++ +     +  +   F+R +    L  +S   ++  +
Sbjct: 4   QELPTLLDVITLGLSSGLSFEASLDLYCMHYNGVLAQLFQRQLLQYRLGVISRRAALQDI 63

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              + +  ++ F++ +    + G  L   L++ ++ +RD +  + + +   +  K    +
Sbjct: 64  ADDLHIDALTRFTSTVIQALECGSPLVGVLSDQAQSIRDAQRFELEEEIEKIPVKMLIPM 123

Query: 133 IGSLPFCVSTLVY 145
              +   +   + 
Sbjct: 124 GVLIVPAMLISIM 136


>gi|295110973|emb|CBL27723.1| Type II secretory pathway, component PulF [Synergistetes bacterium
           SGP1]
          Length = 411

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 50/153 (32%), Gaps = 6/153 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +   V+AGL +S A+ +I  Q    V       V      G+ +S+++        
Sbjct: 78  FFRQMATMVQAGLTLSMAIDIIAEQERSMVFKDVLLDVKGRLDRGIPMSQAMRAHP---- 133

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               +     +    + GG L  +L  ++ +L  +  +K+K+++         +   ++ 
Sbjct: 134 -SVFNNMMISLVQAGEEGGLLDNSLERVAGLLEKQAALKSKIRSAMFYPSFVIFFAVAVV 192

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
                 +          +  +      +  +  
Sbjct: 193 VVFIAFILPKFQQVFRGMNIELPALTEMLFSLG 225


>gi|333025169|ref|ZP_08453233.1| putative integral membrane protein [Streptomyces sp. Tu6071]
 gi|332745021|gb|EGJ75462.1| putative integral membrane protein [Streptomyces sp. Tu6071]
          Length = 294

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 64/156 (41%), Gaps = 4/156 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   + +           LD++  S+  G  + +A+      S        R  ++   
Sbjct: 140 IRRDAQDKRRDLRRVIGAYLDLVAMSLAGGRGLPEALLAAAEVSDGWASRRIRDALQDAR 199

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           +   +   ++ R+   + ++E+   S+ +++ +  G  + E+LA+ +  +R R+  + + 
Sbjct: 200 ITGHTQWYALGRLGEELGIEELKELSSSLALVADDGAKVRESLASRAETMRHRELAEIE- 258

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
              S   K+ + +I  L  C   LV+   P  M V 
Sbjct: 259 --GSAGEKSQSMLIAQLLLCAGFLVFLIFPAAMRVF 292


>gi|302387444|ref|YP_003823266.1| hypothetical protein Closa_3110 [Clostridium saccharolyticum WM1]
 gi|302198072|gb|ADL05643.1| conserved hypothetical protein [Clostridium saccharolyticum WM1]
          Length = 309

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 64/177 (36%), Gaps = 2/177 (1%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSE 67
                 +   AL I+  +      +  AV   +   + PV   F+  +    L    + E
Sbjct: 128 KKDIAAELETALSIVTTAYLRSENILTAVEENLHYLNPPVHQVFKDFVLRVKLIDPDVLE 187

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +I  +   +  +    +   +        +L   L  +   L D + +  +++ L  E +
Sbjct: 188 AIKVLRTKIDNEVFREWCDALCDCQH-DRSLKVTLTPIVSKLSDMRIVNGELEYLVFEPR 246

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
               I+         L+Y  +  + + L++ P G ++L ++AA + I    +  +  
Sbjct: 247 KEFIIMVIFVIGNIPLMYLLNKSWYDTLMHTPLGQIILAISAALIFISTACVIRLTK 303


>gi|150401575|ref|YP_001325341.1| type II secretion system protein [Methanococcus aeolicus Nankai-3]
 gi|150014278|gb|ABR56729.1| type II secretion system protein [Methanococcus aeolicus Nankai-3]
          Length = 295

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 76/209 (36%), Gaps = 34/209 (16%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLS 66
           +  KF  + P AL ++  S+ +G  V++A+  ++    + V  EF +++        S  
Sbjct: 78  KIEKFEKNIPKALYVMTLSLDSGRSVTEAIEEVINAGVNGVDKEFMKILYLIIEKKYSFE 137

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++++ +              +I    + GG L+  L  L++ L D  N+K ++ + +   
Sbjct: 138 DAMTTITENSDSMVFRQIGRLIIENRKQGGELASTLRTLAKTLEDLMNIKQQLLSTTANG 197

Query: 127 KASAWIIGS--------LPFCVSTLVYFTSP---------------------GYMNVLIN 157
                +I          L     T++   SP                     G   +L +
Sbjct: 198 LVVGLVILCGVIPATAGLIGGYLTVLSTMSPNMPAPSPEQIAKCYELIQLGTGIFGLLFS 257

Query: 158 DPRGHM----LLGVAAAFMLIGIMVMRLM 182
            P   +    ++   A  M  GI+V   +
Sbjct: 258 IPLFGLNLSRMIITCAICMTGGIVVFYGI 286


>gi|307353959|ref|YP_003895010.1| type II secretion system F domain-containing protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307157192|gb|ADN36572.1| Type II secretion system F domain protein [Methanoplanus
           petrolearius DSM 11571]
          Length = 307

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 54/178 (30%), Gaps = 3/178 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLG 62
           L   R        P A++ I     AG+  ++   ++   +       E R +     + 
Sbjct: 122 LAGDRRRNIDSTLPYAINYITAMSTAGITPAEVFRLLGNSEIYGESAVEARYITREIDVF 181

Query: 63  L-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
              L +++    +Y P   +  F          G NL+E   N S           K   
Sbjct: 182 GKDLLDALRLAGQYTPSDRMRDFLQGAIASISSGSNLTEYFRNKSEQYMKENRQTQKTFL 241

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            ++   + +++   L      L+   S        + P    ++      +   + V+
Sbjct: 242 ETLGLISESYVTA-LVAGTLFLIILQSIMSTISSTSSPMFLYVVIYGIIPLGSIMFVI 298


>gi|186896485|ref|YP_001873597.1| type II secretion system protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|186699511|gb|ACC90140.1| type II secretion system protein [Yersinia pseudotuberculosis
           PB1/+]
          Length = 400

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 56/183 (30%), Gaps = 19/183 (10%)

Query: 5   IKKRTAKFLD----------DFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFR 53
           IKKR   F            D       I   V A +P+ + + ++  Q S   +    +
Sbjct: 42  IKKRILLFNKYVVKKNSNKTDLVLITRQIATLVNASMPLDEVLDIVGKQNSKSKMIEIIQ 101

Query: 54  RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
           R+      G S ++++S           S     +    ++ G+L   L  L+  +   +
Sbjct: 102 RIRVNIQEGHSFADALSPFPA-----VFSPLYKTMVTAGEVSGHLGLVLVRLADHIEQTQ 156

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
            ++ K+    +       ++      +  L+    P  +           L       + 
Sbjct: 157 KIQRKIIQALIYP---CVLVLISLSVIIILLTAVVPNIVEQFSFSETALPLSTKVLMILS 213

Query: 174 IGI 176
             I
Sbjct: 214 YSI 216


>gi|167721321|ref|ZP_02404557.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei
           DM98]
          Length = 345

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/153 (11%), Positives = 41/153 (26%), Gaps = 6/153 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AGL ++ ++ ++   +    +      +      G   S ++ R  R   
Sbjct: 11  FARQLAGLLHAGLALAPSLELLAQATQRSEMPRVAAGLAREIVAGRQFSAALRRYPRQFD 70

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                 F   +    +  G L+  L  L+          A+V+              ++ 
Sbjct: 71  P-----FFCQLVAVGETAGALAAVLTRLADDRERAAAQYARVKGALAYPATVLLFALAIT 125

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             +   V  T                   +A +
Sbjct: 126 AALLVWVVPTFEQIFAGFGAPLPAPTRFVLALS 158


>gi|153956470|ref|YP_001397235.1| hypothetical protein CKL_3887 [Clostridium kluyveri DSM 555]
 gi|146349328|gb|EDK35864.1| Hypothetical protein CKL_3887 [Clostridium kluyveri DSM 555]
          Length = 309

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 64/177 (36%), Gaps = 2/177 (1%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSE 67
                 +   AL I+  +      +  AV   +   + PV   F+  +    L    + E
Sbjct: 128 KKDIAAELETALSIVTTAYLRSENILTAVEENLHYLNPPVHQVFKDFVLRVKLIDPDVLE 187

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +I  +   +  +    +   +        +L   L  +   L D + +  +++ L  E +
Sbjct: 188 AIKVLRTKIDNEVFREWCDALCDCQH-DRSLKVTLTPIVSKLSDMRIVNGELEYLVFEPR 246

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
               I+         L+Y  +  + + L++ P G ++L ++AA + +    +  +  
Sbjct: 247 KEFIIMVIFVIGNIPLMYLLNKSWYDTLMHTPLGQIILAISAALIFVSTACVLKLTK 303


>gi|330011970|ref|ZP_08307208.1| bacterial type II secretion system protein F domain protein
           [Klebsiella sp. MS 92-3]
 gi|328534038|gb|EGF60689.1| bacterial type II secretion system protein F domain protein
           [Klebsiella sp. MS 92-3]
          Length = 236

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 46/156 (29%), Gaps = 4/156 (2%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
             +  +   ++AGLP+++ ++++  Q S          +  +                  
Sbjct: 62  ETIRQLATLLQAGLPLAEGLSLLAQQQSHAQWQALLEALGRELAQG----VAFSAALAQW 117

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            Q        +    +L G L      L+   ++++ + +KV+           +   + 
Sbjct: 118 PQAFPPLYLAMISTGELTGKLDICCLQLANQQQEQQRLASKVKKALRYPLIVLSLALLVV 177

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             +   V                    + VAA  ML
Sbjct: 178 LGMLYFVLPEFTAIYQTFSTPLPLMTRMVVAAGDML 213


>gi|262375108|ref|ZP_06068342.1| general secretion pathway protein F [Acinetobacter lwoffii SH145]
 gi|262310121|gb|EEY91250.1| general secretion pathway protein F [Acinetobacter lwoffii SH145]
          Length = 401

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 56/174 (32%), Gaps = 15/174 (8%)

Query: 2   KHLIKKRTAKFLD-----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRV 55
           K   + R   F       D       +   V A +P+ +A+  +  QS    V++    V
Sbjct: 47  KKDQQHRRKWFEKSITAYDLALMTRQLSVLVAAAIPLEEAIRAVGKQSEKVHVQNLLMSV 106

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                 G SL++ + +  R                  +  G+L   L  L+    +R  M
Sbjct: 107 RSKVLEGHSLAQGLQQSGR------FPELYIATIAAGERSGHLDLILDQLADYTENRFAM 160

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
           + K+Q   +       +  ++   V  L+ +  P  +            + VA 
Sbjct: 161 QKKIQGAMVYPIILMLMSFAI---VMGLMTYVVPDIVKTFDQSKDALPWITVAL 211


>gi|256824884|ref|YP_003148844.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547]
 gi|256688277|gb|ACV06079.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547]
          Length = 309

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 56/154 (36%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   + +R  + +++FP   +++  +V AG   + A+  +   S   +  E  + +    
Sbjct: 154 LARRVAQRERRVVEEFPAVAELLALAVAAGESATAALERVARLSRGELSRELTQALGEAR 213

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL  ++  +     +  V+ F   + +  + G  L++ L   +   R+        +
Sbjct: 214 TGASLPTALEGIAERTEVPSVARFVDGVIIAVERGTPLADVLRAQATDAREAARQHVIAE 273

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
               E      ++  +         +   G + V
Sbjct: 274 GGRREILMMIPVVFFVLPVTVVFAMYPGLGALQV 307


>gi|225375664|ref|ZP_03752885.1| hypothetical protein ROSEINA2194_01289 [Roseburia inulinivorans DSM
           16841]
 gi|225212521|gb|EEG94875.1| hypothetical protein ROSEINA2194_01289 [Roseburia inulinivorans DSM
           16841]
          Length = 203

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 64/185 (34%), Gaps = 2/185 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++            +   AL II  +      +  +V   +   + PV++ F   +    
Sbjct: 14  IRLTASHFKKDVSSELETALSIITTAYLRSEDILTSVEENLEYLNPPVKTVFADFVSRIR 73

Query: 61  L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           L    L  ++  +   +       +   +        +L   L  +   L D + + A++
Sbjct: 74  LIDPDLEAALEELKGKIENDVFMEWVDALKSCL-YDRSLKTTLTPIVAKLSDMRIVNAEL 132

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           + L  E +     +  L      L+YF +  + + L++   G ++L V  A + +    +
Sbjct: 133 EYLVFEPRKEFITMVVLAVGNIPLLYFLNQSWYDTLMHTIPGQIMLAVTGAIIFVSTACV 192

Query: 180 RLMIN 184
             +  
Sbjct: 193 IKLTK 197


>gi|4680723|gb|AAC23600.2| type IV pilin biogenesis protein [Vibrio vulnificus]
          Length = 409

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/129 (11%), Positives = 42/129 (32%), Gaps = 6/129 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +  G+P+  ++ ++        ++S    V +    G  LS+++   
Sbjct: 68  KDITLLTRQLATMLTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTPLSKALRSA 127

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                  +       +    +  GNL +    L+      + ++AKV    +       +
Sbjct: 128 S-----PQFDGIYVDLVATGEQSGNLDQVFERLAFYREKNEQLRAKVIKALIYPCMVVLV 182

Query: 133 IGSLPFCVS 141
              + + + 
Sbjct: 183 ALGVSYLML 191



 Score = 36.3 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/136 (8%), Positives = 37/136 (27%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
                    +  S  AG+P+  ++      + +   +     V      G+ +  ++   
Sbjct: 273 AAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAAGMPMYIAMRN- 331

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          + +  +  G + + L  ++ I     +         +E     ++
Sbjct: 332 -----SLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFL 386

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V+ +     
Sbjct: 387 GVVVGGLVTAMYLPIF 402


>gi|330976793|gb|EGH76829.1| type II secretion system protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 294

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 68/157 (43%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  + ++R  + + +    + ++     +G+ V  A+ V+  +       +  E R V+ 
Sbjct: 134 LATVARRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLM 193

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL L E + +    + + E+S    +++     GG   ++L  L +++ DR+  + 
Sbjct: 194 RVDSGLELGEELRKTAALLDVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 253

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +     + AK S  ++  L   +  ++    PG+M +
Sbjct: 254 QEYISKLSAKMSVVMMVFLFPALLIVL--AGPGFMAI 288


>gi|261338902|ref|ZP_05966760.1| hypothetical protein ENTCAN_05099 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318726|gb|EFC57664.1| protein transport protein HofC [Enterobacter cancerogenus ATCC
           35316]
          Length = 398

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 65/197 (32%), Gaps = 22/197 (11%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +K    ++  +    +      +   ++AGL +S ++A++  Q      R+  + + +  
Sbjct: 45  LKRRRLRQRWQIDHCYAIF-QQLATLLQAGLTLSHSLAMLAQQHPLPQWRALLQAIADDL 103

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G + SE++ +     P          +    +L G L      L++  + ++ ++AKV
Sbjct: 104 SEGCAFSEALKQWPEVFPP-----LYVAMVKTGELTGKLETCCRQLAQQQKSQQLLRAKV 158

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH---------------ML 164
                       +  ++   + TLV        +                        ++
Sbjct: 159 MKALRYPIIILTLAAAVVLAMVTLVLPEFAAIYSTFNTPLPWLTQSVMRLSAFIQHHAVV 218

Query: 165 LGVAAAFMLIGIMVMRL 181
           L V      IG   +R 
Sbjct: 219 LIVLFITPFIGAYGLRR 235


>gi|284989191|ref|YP_003407745.1| hypothetical protein Gobs_0593 [Geodermatophilus obscurus DSM
           43160]
 gi|284062436|gb|ADB73374.1| conserved hypothetical protein [Geodermatophilus obscurus DSM
           43160]
          Length = 264

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 63/172 (36%), Gaps = 6/172 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRM 72
                AL  +   +R+G  + +A    V   +D        R + +   G   ++    +
Sbjct: 94  AALVEALTGLGAELRSGRSLDEATRAAVAACADDDSGRALARAVRSPGDGAGEADDGGEL 153

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R +        +    + ++ G +L+  +  +   LR R   + ++++ +  ++ASA +
Sbjct: 154 GRALG-----RVAAAARLSARTGCSLAAVVGAVEDDLRARSRHRLELRSATAGSRASAAL 208

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +  LP     +          VL     G +LL       + G++    ++ 
Sbjct: 209 LAGLPVLGLVMGGGVGADPWRVLTTTGTGQLLLVAGVGLEVAGLVWSARLVR 260


>gi|261409010|ref|YP_003245251.1| Type II secretion system F domain-containing protein [Paenibacillus
           sp. Y412MC10]
 gi|261285473|gb|ACX67444.1| Type II secretion system F domain protein [Paenibacillus sp.
           Y412MC10]
          Length = 290

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 73/158 (46%), Gaps = 7/158 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           +   +  R    + + P  L+ IV  V AG  V  A+   V ++ D   P+ +E +R++ 
Sbjct: 134 LHKKVTLREQDIVMELPELLNKIVLLVGAGETVQRAIIHCVERNEDASHPLYAELKRMVL 193

Query: 58  TQHLGLSLSESISRMVRYMPLQEVS-FFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
               G    ++  +  +   +QEVS F +TV+    + G +   AL +LSR+L +++   
Sbjct: 194 EWEGGHPFQQAFEQFNKRCGVQEVSIFTTTVLLNFRRGGNDFVLALRDLSRVLWEKRKAI 253

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           A+ +     +K    ++  +   +  +V   +P +M +
Sbjct: 254 ARTRGEQASSKL---VLPMVVIFMIVIVLLGAPAFMMM 288


>gi|289525615|emb|CBJ15093.1| general secretion pathway protein F [Chlamydia trachomatis Sweden2]
 gi|296435176|gb|ADH17354.1| general secretion pathway protein F [Chlamydia trachomatis E/150]
 gi|296438896|gb|ADH21049.1| general secretion pathway protein F [Chlamydia trachomatis E/11023]
          Length = 391

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/193 (11%), Positives = 57/193 (29%), Gaps = 15/193 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           ++ + ++       +       +   +R+G+ + DA+  +  Q     +      ++E  
Sbjct: 42  IRKVRERNYRVTTTELVIFTKQLALLLRSGISLYDALTSLRDQYQGRALAGVLTSLMEAL 101

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G   SE+++R            F        +  GNL  AL N+ ++L +++ +   +
Sbjct: 102 RSGGVFSEALARFP-----HIFDSFYQNSVRSGESIGNLEGALMNIIKVLEEKEKLSKSL 156

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG---------VAAA 170
            A             ++       V          +        +               
Sbjct: 157 AAALSYPAILLVFSCAVVVFFLIGVIPILKETFEDMEMTRLTKAVFSCSTWFCRYKFLVL 216

Query: 171 FMLIGIMVMRLMI 183
              IG  +   ++
Sbjct: 217 LGGIGGAISLRIV 229


>gi|226939982|ref|YP_002795055.1| type II secretion system protein [Laribacter hongkongensis HLHK9]
 gi|226714908|gb|ACO74046.1| Bacterial type II secretion system protein [Laribacter
           hongkongensis HLHK9]
          Length = 401

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/186 (11%), Positives = 66/186 (35%), Gaps = 12/186 (6%)

Query: 1   MKHLIKK---RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57
           +  L +K   R  +      +    + +++RAG+P+ + +A +   +S P+  E   ++ 
Sbjct: 49  LDWLRRKTLPRQERI-----HFCFYLDQTLRAGVPLLEGLADLRDSASSPLFREILAMLV 103

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G                         +    +  G L + LA L+  L+ +  + A
Sbjct: 104 LDIEGGKR----LSEALAEHPSVFDSVFVNLVATGETTGALPDVLARLADQLKWQDELIA 159

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           + + + +       ++  +   + T +      ++  +  +      + +A + + +   
Sbjct: 160 QTRKILLYPAFVGTMLLLVIIFLMTYLVPQLVDFIRDIQKELPLQTRILLAVSDVFVHFG 219

Query: 178 VMRLMI 183
            +  ++
Sbjct: 220 WLMPLV 225


>gi|167033520|ref|YP_001668751.1| type II secretion system protein [Pseudomonas putida GB-1]
 gi|166860008|gb|ABY98415.1| type II secretion system protein [Pseudomonas putida GB-1]
          Length = 396

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 66/179 (36%), Gaps = 13/179 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           ++ +  +R A F  D       +   + AGLP+ DA+  +  ++     R     ++   
Sbjct: 47  LRGMAWRREAAF--DLVLFSQELSTLLNAGLPLIDALESLAEKAPSPATRKVLAELVRQL 104

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           + G SLS+++ +  R  P          +   S+  G L +ALA      +    ++ K+
Sbjct: 105 YEGRSLSQALGQQPRVFPP-----LYVALVQSSERTGALGDALARYISYRQRLDLVRQKL 159

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
              S+       + G +   +   V          +     G  L  ++   M IG+ +
Sbjct: 160 VGASVYPLLLLLVGGGVVLFLLGYVVPRFSQVFEGM-----GTELPWLSRVLMQIGLFL 213


>gi|15669474|ref|NP_248284.1| hypothetical protein MJ_1286 [Methanocaldococcus jannaschii DSM
           2661]
 gi|3025058|sp|Q58682|Y1286_METJA RecName: Full=Uncharacterized protein MJ1286
 gi|1591923|gb|AAB99288.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 595

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 67/183 (36%), Gaps = 9/183 (4%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
            +    +P  L+ +  +VR+G+ +  A+ V    +  P+    +++      G  ++E  
Sbjct: 390 NQKERYYPIFLNDLTMAVRSGMDIIRAMQVCARTNYGPLTKIVKKMAIQMSWGRPVNEVF 449

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
           + + R          ++++   +  GG++ + L +++        MK ++ A        
Sbjct: 450 ADLERTEKSLIAKRIASILKECAVSGGDVKDILTSVTVHAYKLSEMKREISARQFIYVVV 509

Query: 130 AWIIGSLPFCV-STLVYFTSPGYMN-------VLINDPRGHMLLGVAAAF-MLIGIMVMR 180
            ++   L       +V+   P  +            +     +L  +      +GI+  R
Sbjct: 510 IYLSFFLYIGTSYIMVHSLLPTLLKNIHGLSVEFYKNYLFQGILIYSIFSGASLGILTER 569

Query: 181 LMI 183
            +I
Sbjct: 570 SII 572


>gi|227494922|ref|ZP_03925238.1| type II secretion system protein [Actinomyces coleocanis DSM 15436]
 gi|226831374|gb|EEH63757.1| type II secretion system protein [Actinomyces coleocanis DSM 15436]
          Length = 293

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 61/158 (38%), Gaps = 10/158 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + + +   + K      +A +++   + AG  V  A+  +   S   + S+    +    
Sbjct: 140 LTYRVNTFSKKLNSQVADAAELLALVISAGESVPGALNRVAKVSGPQMASQLESALTQIA 199

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G ++S+++  +    P  ++      +    + G +LSE L + ++ LR+      +  
Sbjct: 200 QGTAVSKALKTLANKTPSVQLQRLLNTLVSGMERGSSLSEILRHQAKDLRE------ESL 253

Query: 121 ALSMEAKASAWIIGSLPFCVSTL----VYFTSPGYMNV 154
              +E+     I   +P     L    ++   PG + +
Sbjct: 254 RNLLESGGRKEIAMLIPVVFLILPVTVIFALYPGLIAL 291


>gi|310658165|ref|YP_003935886.1| type II secretion system protein [Clostridium sticklandii DSM 519]
 gi|308824943|emb|CBH20981.1| putative Type II secretion system protein [Clostridium sticklandii]
          Length = 348

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 56/171 (32%), Gaps = 7/171 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           D       +    ++G+P+ D + +      DP   E  +      +   L++  S    
Sbjct: 11  DLSLFCYQLSLIFKSGIPILDGMEIFAKDMMDPRLKEVAQ-----DMQQQLAQGYSLHSV 65

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
               +    +   +   ++  GNL + L  LS        +  K+++          ++ 
Sbjct: 66  IEKYKFFPVYLASMVKIAEQTGNLQDELERLSDYYEQTDRLNNKIKSAVTYPLILLVLMA 125

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMI 183
            +   +   V       +  L  D      +++ +A       + ++ ++I
Sbjct: 126 GVILFLVLKVLPMFHEILLSLGGDIPVSTKIMIDLANILKTYALAIIGVLI 176


>gi|317057045|ref|YP_004105512.1| type II secretion system F domain [Ruminococcus albus 7]
 gi|315449314|gb|ADU22878.1| Type II secretion system F domain [Ruminococcus albus 7]
          Length = 398

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 48/141 (34%), Gaps = 6/141 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISR 71
             +       +   + +GL +  A+ ++  +  +    E +++V E    G S S ++  
Sbjct: 58  TAELAYCCRQLSAMMSSGLTIVKALDILYKEEENKGAKEVWKQVYEEVQKGESFSGALDA 117

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P      F   +    ++ G+L   +  L     +   +  KV+   +       
Sbjct: 118 KRGCFP-----DFFISMVDAGEISGSLDITMKRLQEYYANTNKLNNKVKGAMIYPCVLLV 172

Query: 132 IIGSLPFCVSTLVYFTSPGYM 152
           ++ ++   +S  +       M
Sbjct: 173 LVIAVVILMSVKILPIFRSMM 193


>gi|162420196|ref|YP_001607615.1| general secretion pathway protein F [Yersinia pestis Angola]
 gi|162353011|gb|ABX86959.1| general secretion pathway protein F [Yersinia pestis Angola]
          Length = 400

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 56/183 (30%), Gaps = 19/183 (10%)

Query: 5   IKKRTAKFLD----------DFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFR 53
           IKKR   F            D       I   V A +P+ + + ++  Q S   +    +
Sbjct: 42  IKKRILLFNKYVVKKNSNKTDLVLITRQIATLVNASMPLDEVLDIVGKQNSKSKMIEIIQ 101

Query: 54  RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
           R+      G S ++++S           S     +    ++ G+L   L  L+  +   +
Sbjct: 102 RIRVNIQEGHSFADALSPFPA-----VFSPLYKTMVTAGEVSGHLGLVLVRLADHIEQTQ 156

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
            ++ K+    +       ++      +  L+    P  +           L       + 
Sbjct: 157 KIQRKIIQALIYP---CVLVLISLSVIIILLTAVVPNIVEQFSFSETALPLSTKVLMILS 213

Query: 174 IGI 176
             I
Sbjct: 214 YSI 216


>gi|297571776|ref|YP_003697550.1| type II secretion system protein F [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296932123|gb|ADH92931.1| Type II secretion system F domain protein [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 291

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 58/155 (37%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +  +       P+ +++I  +V AG PV  A+   V   S P+    R  +   H
Sbjct: 137 LTTAARATSRILTAQLPDVIELIALAVSAGEPVRPAIERAVRSGSGPLIEHLRTTLAHVH 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL  ++S +      Q VS F+  +    + GG L++ L N +R  RD        +
Sbjct: 197 AGKSLPAALSDLSVRAGNQNVSRFTDSLITAMEQGGGLAQTLHNQARDARDAARRDLLEE 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
               E      ++  +         F +   +  +
Sbjct: 257 GGKAEISMMIPVVFLILPITVIFTIFPALSQLTFM 291


>gi|298527741|ref|ZP_07015145.1| Type II secretion system F domain protein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511393|gb|EFI35295.1| Type II secretion system F domain protein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 419

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/167 (8%), Positives = 51/167 (30%), Gaps = 6/167 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
             D     + +   ++AG+ ++ ++A++   + +  +    + V      G  L +++  
Sbjct: 79  TKDLTAFTEHLGAMLKAGITMNKSLALLGDLTENRSLARVIKDVHSRIREGSHLYQALEE 138

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P          +    + GG L   L  LS  + +   ++  + +  +       
Sbjct: 139 HPEVFP-----EVFINMVRAGESGGILDVILERLSEFMNEMARLREHLVSSMIYPAILGL 193

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
              +    +  +V          +  +      + +     ++    
Sbjct: 194 TAAASMLVMLVVVIPRFADIFVDMGIEMPQATRVMLWCGNFIVHYWW 240



 Score = 34.3 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 11/137 (8%), Positives = 36/137 (26%), Gaps = 5/137 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
              +       +   + +G+ + +A+ ++ G   + V      V+        L +    
Sbjct: 281 LKLELARFSRTLGTLLNSGVSILEAMNIVSGVVGNTVLKNRLAVVYD-----DLKQGRML 335

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                        +  +    +  G ++  L  +  +         K      E      
Sbjct: 336 SGSLEQHGIFPPLAVNMLRVGEESGEMAVMLEKVGDMYDRDLRRAVKSFTSIFEPAVILV 395

Query: 132 IIGSLPFCVSTLVYFTS 148
           +   +   V +++    
Sbjct: 396 MGLVIGVMVVSMLMAVF 412


>gi|88798778|ref|ZP_01114361.1| general secretion pathway protein F [Reinekea sp. MED297]
 gi|88778541|gb|EAR09733.1| general secretion pathway protein F [Reinekea sp. MED297]
          Length = 404

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/170 (11%), Positives = 53/170 (31%), Gaps = 4/170 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            D       +   V +G+P+ + +     QS         R +        L        
Sbjct: 65  ADLALLTRQLSTLVGSGMPLEECLKAAAEQSE----KARVRGLLLSVRSKVLEGFSLASA 120

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +             +  G+L + L  L+  + D++ ++ ++Q  S+      ++ 
Sbjct: 121 LKEYPRAFPVLYQATVNAGEHSGHLDQVLDRLADYMEDQQQIRNQIQIASIYPSILIFVA 180

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             +   +   V     G +     +  G     +A++  +    +  L++
Sbjct: 181 IGIIVFLLKSVVPQIVGAITATGGELPGPTRWLLASSGWIETYWLHSLIV 230



 Score = 35.9 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/160 (11%), Positives = 41/160 (25%), Gaps = 19/160 (11%)

Query: 2   KHLIKKRTA------------KFLDDF--PNALDIIVRSVRAGLPVSDAVAVIVGQSSDP 47
               ++R              +    F     +  +     AG+P+ +A+ +     S+ 
Sbjct: 242 NRRKERRIRTHRLFLRLPLIGRISRGFNTSRFIGTVAMLSSAGVPLVEAMKIASQVVSNL 301

Query: 48  VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR 107
                          +S+SE  S                 +    +  G L + L+  + 
Sbjct: 302 EIQ-----ARVNRAAISVSEGGSLHKALSEAGYFRPMMLHMIGSGEASGELDKMLSKTAD 356

Query: 108 ILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
               +           ME      + G +   V  +V   
Sbjct: 357 AEDRQVKDLISTILGLMEPLMLIVMGGIVLIIVLAIVLPM 396


>gi|289675689|ref|ZP_06496579.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           FF5]
          Length = 96

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 51/94 (54%)

Query: 91  QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150
             + GGN SE + NL +++RDR+    +++A++ E + +A ++  LP  ++      +P 
Sbjct: 1   NHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETRMTAVVLALLPISMAGYFLAVNPN 60

Query: 151 YMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           Y+  + +D  G ++L  A A    G +V+  M+ 
Sbjct: 61  YLLHMWDDESGKIMLSAAFALQATGCVVLWRMLR 94


>gi|121599735|ref|YP_991803.1| type IV pilus biogenesis protein PilC [Burkholderia mallei SAVP1]
 gi|124384858|ref|YP_001027295.1| type IV pilus biogenesis protein PilC [Burkholderia mallei NCTC
           10229]
 gi|126449792|ref|YP_001082767.1| type IV pilus biogenesis protein PilC [Burkholderia mallei NCTC
           10247]
 gi|217425697|ref|ZP_03457187.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei
           576]
 gi|238561275|ref|ZP_00442358.2| type IV pilus biogenesis protein PilC [Burkholderia mallei GB8
           horse 4]
 gi|251766627|ref|ZP_02264476.2| type IV pilus biogenesis protein PilC [Burkholderia mallei PRL-20]
 gi|254178757|ref|ZP_04885411.1| type IV pilus biogenesis protein PilC [Burkholderia mallei ATCC
           10399]
 gi|254202797|ref|ZP_04909160.1| type IV pilus biogenesis protein PilC [Burkholderia mallei FMH]
 gi|254208139|ref|ZP_04914489.1| type IV pilus biogenesis protein PilC [Burkholderia mallei JHU]
 gi|254357657|ref|ZP_04973931.1| type IV pilus biogenesis protein PilC [Burkholderia mallei
           2002721280]
 gi|121228545|gb|ABM51063.1| type IV pilus biogenesis protein PilC [Burkholderia mallei SAVP1]
 gi|124292878|gb|ABN02147.1| type IV pilus biogenesis protein PilC [Burkholderia mallei NCTC
           10229]
 gi|126242662|gb|ABO05755.1| type IV pilus biogenesis protein PilC [Burkholderia mallei NCTC
           10247]
 gi|147747044|gb|EDK54121.1| type IV pilus biogenesis protein PilC [Burkholderia mallei FMH]
 gi|147752033|gb|EDK59100.1| type IV pilus biogenesis protein PilC [Burkholderia mallei JHU]
 gi|148026721|gb|EDK84806.1| type IV pilus biogenesis protein PilC [Burkholderia mallei
           2002721280]
 gi|160694671|gb|EDP84679.1| type IV pilus biogenesis protein PilC [Burkholderia mallei ATCC
           10399]
 gi|217391285|gb|EEC31317.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei
           576]
 gi|238524989|gb|EEP88419.1| type IV pilus biogenesis protein PilC [Burkholderia mallei GB8
           horse 4]
 gi|243065299|gb|EES47485.1| type IV pilus biogenesis protein PilC [Burkholderia mallei PRL-20]
          Length = 405

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/153 (11%), Positives = 41/153 (26%), Gaps = 6/153 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AGL ++ ++ ++   +    +      +      G   S ++ R  R   
Sbjct: 71  FARQLAGLLHAGLALAPSLELLAQATQRSEMPRVAAGLAREIVAGRQFSAALRRYPRQFD 130

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                 F   +    +  G L+  L  L+          A+V+              ++ 
Sbjct: 131 P-----FFCQLVAVGETAGALAAVLTRLADDRERAAAQYARVKGALAYPATVLLFALAIT 185

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             +   V  T                   +A +
Sbjct: 186 AALLVWVVPTFEQIFAGFGAPLPAPTRFVLALS 218


>gi|229588191|ref|YP_002870310.1| hypothetical protein PFLU0643 [Pseudomonas fluorescens SBW25]
 gi|229360057|emb|CAY46911.1| putative membrane protein [Pseudomonas fluorescens SBW25]
          Length = 298

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 60/147 (40%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +    K R      +    + ++     +G+ V  ++ V+  ++      +  E R ++ 
Sbjct: 137 LAAAAKHRQQAIAKEISTFIPLLRILFESGMAVEQSLRVLGNEAQRLLPHLTHELRLILA 196

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL L E + + V  + + E +    ++    Q GG   ++L  L ++L DR+  + 
Sbjct: 197 RVDSGLELGEELGKTVHVLEVDEFTDTCIILQQLIQQGGGAMKSLLALKQLLDDRRLTRL 256

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           +     M AK S  ++  L   +  ++
Sbjct: 257 QEYISKMSAKMSVVMMVFLFPALLIVL 283


>gi|226199615|ref|ZP_03795171.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei
           Pakistan 9]
 gi|237813901|ref|YP_002898352.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei
           MSHR346]
 gi|225928361|gb|EEH24392.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei
           Pakistan 9]
 gi|237503240|gb|ACQ95558.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei
           MSHR346]
          Length = 405

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/153 (11%), Positives = 41/153 (26%), Gaps = 6/153 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AGL ++ ++ ++   +    +      +      G   S ++ R  R   
Sbjct: 71  FARQLAGLLHAGLALAPSLELLAQATQRSEMPRVAAGLAREIVAGRQFSAALRRYPRQFD 130

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                 F   +    +  G L+  L  L+          A+V+              ++ 
Sbjct: 131 P-----FFCQLVAVGETAGALAAVLTRLADDRERAAAQYARVKGALAYPATVLLFALAIT 185

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             +   V  T                   +A +
Sbjct: 186 AALLVWVVPTFEQIFAGFGAPLPAPTRFVLALS 218


>gi|167755497|ref|ZP_02427624.1| hypothetical protein CLORAM_01011 [Clostridium ramosum DSM 1402]
 gi|167704436|gb|EDS19015.1| hypothetical protein CLORAM_01011 [Clostridium ramosum DSM 1402]
          Length = 397

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 60/167 (35%), Gaps = 13/167 (7%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            +  N    I   + +GLP+   V+++   + +  +++ +  +      G +LS+++   
Sbjct: 58  KELANFCREIGTMMNSGLPLIRTVSILASREDNKKLKAIYNDIYVKLQQGQTLSDALKEQ 117

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +  P          +    +  GN+ + +  L+    +   +K KV++          +
Sbjct: 118 GKAFP-----DILIQMVRSGEASGNMQDTMMVLNNQFTNDNKIKNKVKSAMTYPV---IL 169

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
                  +  +     P + ++      G  L  +    ++I   +M
Sbjct: 170 GIVTIVVLLIVYTAVLPSFFSMF----EGMELPLITEINIIISKFIM 212


>gi|255507168|ref|ZP_05382807.1| general secretion pathway protein F [Chlamydia trachomatis
           D(s)2923]
          Length = 391

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 58/193 (30%), Gaps = 15/193 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           ++ + ++       +       +   +R+G+ + DA+  +  Q     +      ++E  
Sbjct: 42  IRKVRERNYRVTTTELVIFTKQLALLLRSGISLYDALTSLRDQYQGRALAGVLTSLMEAL 101

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G   SE+++R            F        +  GNL  AL N+ ++L +++ +   +
Sbjct: 102 RSGGVFSEALARFP-----HIFDSFYQNSVRSGESIGNLEGALMNIIKVLEEKEKLSKSL 156

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG---------VAAA 170
            A             ++       V  T       +        +               
Sbjct: 157 AAALSYPAILLVFSCAVVVFFLIGVIPTLKETFEDMEMTRLTKAVFSCSTWFCRYKFLVL 216

Query: 171 FMLIGIMVMRLMI 183
              IG  +   ++
Sbjct: 217 LGGIGGAISLRIV 229


>gi|46200147|ref|YP_005814.1| general secretion pathway protein F [Thermus thermophilus HB27]
 gi|46197775|gb|AAS82187.1| general secretion pathway protein F [Thermus thermophilus HB27]
          Length = 396

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 52/159 (32%), Gaps = 4/159 (2%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           +    ++     V AG+PV+ A+  +  +S +P+  E  R +  +  G            
Sbjct: 57  ELVLFMEEFATLVGAGVPVAQALHTLSLESRNPLLKEAARGVRERVEGGE----ALAQAM 112

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
               +        +   +++GG L   L   +  L    +++ KV+   +       ++ 
Sbjct: 113 EHYPEVFPPLVRALVAAAEVGGALEVVLRRTAEYLDKSHDLREKVRTALLYPSFVVAVLV 172

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
            +   +   V             +        + A+F L
Sbjct: 173 LVVAVLLLFVIPVFSRLYGAAGAELPWPTRFLIGASFFL 211


>gi|57242547|ref|ZP_00370485.1| general secretory pathway protein F [Campylobacter upsaliensis
           RM3195]
 gi|57016832|gb|EAL53615.1| general secretory pathway protein F [Campylobacter upsaliensis
           RM3195]
          Length = 393

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 63/171 (36%), Gaps = 9/171 (5%)

Query: 1   MKHLIKKRTAKFLDDF-PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           +K L K+   K  D             + AGL + +A+ ++   SS  ++   + +    
Sbjct: 41  LKELKKQSRIKISDTLFCAFFKEFALLLNAGLSIKEALNLMSENSSKHLKDAAKELNVNL 100

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           + G +LS + S +   + L E+S          +  GNL+   + ++ +       K + 
Sbjct: 101 NSGQNLSVAFSNLALNLNLSELSL-----IKMGEKTGNLAYIFSQIAELRTKLILNKKRF 155

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           +           +  +L      L++F  P ++++  +      L+     
Sbjct: 156 KKAIHYP---CLVFLALFGAFLFLMFFVVPEFLDIFESLGANLPLMTQILL 203



 Score = 37.0 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/130 (10%), Positives = 40/130 (30%), Gaps = 5/130 (3%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               I    +++G  +S A  +      +    E  +      + LSL + +   + +  
Sbjct: 262 YFFMIFSLLLQSGNALSQAFHLASSSVENKFLKEKFK-----QIELSLGQGLELSLAFKK 316

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         +   +   G L    A ++    +++    ++    +E   +  +   + 
Sbjct: 317 VGIFDELVISLLHSAMKSGTLDLLSAKIAHFYEEKQEDFIEIFLKFLEPLMTLLVGILVL 376

Query: 138 FCVSTLVYFT 147
           F    +    
Sbjct: 377 FLALGIFLPM 386


>gi|298345868|ref|YP_003718555.1| hypothetical protein HMPREF0573_10742 [Mobiluncus curtisii ATCC
           43063]
 gi|304390427|ref|ZP_07372380.1| type II secretion system protein [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|298235929|gb|ADI67061.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 43063]
 gi|304326183|gb|EFL93428.1| type II secretion system protein [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 408

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 56/176 (31%), Gaps = 14/176 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI----------ETQHLGLSLSESISRM 72
           I   + AG  +++A    + +    +     +               H     +   + +
Sbjct: 87  IATRLEAGASIANAWDTTLHRLDARLDYAAIQAFVAHPRPGLWERFNHWRAGRTTETNPL 146

Query: 73  VRYMPLQEVSFFSTVISVQSQLGG----NLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
            R    +  +     + + +Q+       L+E L  ++  +       AK     +  KA
Sbjct: 147 ARVRHPEAAAQALRGMLIATQVATQVGAPLAEILNRVADGIAATLETAAKRHTAQVGPKA 206

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +A ++G LP     +  F     +++         +  +    M+ G +    MI 
Sbjct: 207 TARLLGVLPLAALGMAQFIGVDVIDMAFRGGINTWVFVIGLGLMVAGNLWSAAMIR 262


>gi|124486353|ref|YP_001030969.1| hypothetical protein Mlab_1538 [Methanocorpusculum labreanum Z]
 gi|124363894|gb|ABN07702.1| type II secretion system protein [Methanocorpusculum labreanum Z]
          Length = 601

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 55/152 (36%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           + ++   K     P  L  I      G+ +  A+++I G  +  + SE + V +    G 
Sbjct: 392 IRRRYVTKVEKQLPEFLREIADMRDIGMTLQGAISMISGNKTGVLSSEIKIVTKELSYGA 451

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            LS ++ RM   + L  V    +++   S++   + E L      L     MK+K   +S
Sbjct: 452 HLSNALVRMEERIGLVSVKRAISLLVKASEVTDYVREILTIAISDLEHYVKMKSKRLNVS 511

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
               A  ++   +    +  +           
Sbjct: 512 FVYLAVIYLSFGIYLYSAYQMNVAFISSFTSF 543



 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/174 (11%), Positives = 59/174 (33%), Gaps = 7/174 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQHLG 62
            + R  K   D P A+  + +++ + + + +    +         V  E   ++    L 
Sbjct: 97  AQGRKNKIEQDLPFAITYM-QALSSTITLYEIFRSVYEAADLYGEVSRECGLIVRDVELF 155

Query: 63  L-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
              L  +I   ++  P +        +++  + GGN+     + S   R+    +     
Sbjct: 156 GEDLLTAIENTIKITPSENFRELLNDLALVYRSGGNMRNFFNSKSESYREIARQQLDALL 215

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
             +E  A  ++   +   ++ ++   +         +  G+++  +     L  
Sbjct: 216 QFLEMIAEVYVTAFVAGPIAIMIMLVAQNLSG---QNTMGNIMPIMMVFLPLGA 266


>gi|187923649|ref|YP_001895291.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
 gi|187714843|gb|ACD16067.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
          Length = 336

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 60/157 (38%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           ++    KR    +D+ P  +D++      GL +  ++ V+V         +  E      
Sbjct: 173 LRRRAGKRRHAVVDELPLLVDLLRLLQGVGLSLDQSLQVVVNDFRGMLPVLAGELEIAQR 232

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S++R+      +++     ++      GG + E L      LR+ +    
Sbjct: 233 QFAAGRTREQSLNRLASSYDNEDLRAVVRLLVQVDLHGGAVQEPLKQFGDRLREARRAML 292

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           + +   +  K +  +I +L   +  ++    PG + V
Sbjct: 293 RERIGRLAVKMTGVMIVTLLPAL--MIVTAGPGVLAV 327


>gi|167760252|ref|ZP_02432379.1| hypothetical protein CLOSCI_02625 [Clostridium scindens ATCC 35704]
 gi|167662135|gb|EDS06265.1| hypothetical protein CLOSCI_02625 [Clostridium scindens ATCC 35704]
          Length = 349

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/147 (8%), Positives = 46/147 (31%), Gaps = 5/147 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           +  +    +   +++G+   + V++++  +      E   V+        L+ +      
Sbjct: 13  EIASFCSQMAMILKSGISSIEGVSIMLQDARGSDEKELLTVMNDV-----LTHTGILHEA 67

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                    +   +    +  G L + + +L+       ++   ++          +++ 
Sbjct: 68  LKKTGAFPGYLLNMVRIGEQTGRLDDVMQSLAEYYEKEASLAQTIKNAVTYPLIMIFMMI 127

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRG 161
            +   + T V          L ++  G
Sbjct: 128 LVIIVLITKVMPVFNQVFKQLGSEMTG 154


>gi|289177984|gb|ADC85230.1| hypothetical protein BIF_00599 [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 264

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 58/192 (30%), Gaps = 27/192 (14%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQ-------------------SSDPVRSEFRRVIETQ 59
            L  I+ S++AG  +  A+                         +S    +     +   
Sbjct: 69  MLSSIIASLQAGAALEPALERAFDSVFPERRCGGARARHMRDPTTSGDGHAVGVYAVCDG 128

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVIS--------VQSQLGGNLSEALANLSRILRD 111
              + +++            E +     ++        V  +LG   +  L  +      
Sbjct: 129 EGNVDVTQMARLFAACRLPHERASHCAQVACGVAVASAVSLELGCPAARCLEAVRAGYLR 188

Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
            +             K++A ++ +LP  V  L        + +L    +G  +L +    
Sbjct: 189 ARLQDDLRANAFAMPKSTARMLLALPAVVVFLGELLGADPLGMLFGSAQGRAMLCLGTIC 248

Query: 172 MLIGIMVMRLMI 183
            + G++ M+ ++
Sbjct: 249 YVGGLLWMQRLL 260


>gi|76800734|ref|YP_325742.1| transmembrane protein (type II secretion system proteins TadC)
           [Natronomonas pharaonis DSM 2160]
 gi|76556599|emb|CAI48170.1| transmembrane protein (homolog 4 to type II secretion system
           proteins TadC) [Natronomonas pharaonis DSM 2160]
          Length = 615

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 62/183 (33%), Gaps = 9/183 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQ 59
           ++  +  R        P A+  +           + +  +  Q +     +E RRV+   
Sbjct: 120 LRWRVDARRTAIERTLPGAVRYLRALADGSEGRREMLRRVAKQDAYGETSAELRRVLRKA 179

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTV-ISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            L  SL   +  + R  P +E+     +     +  G +  +    +   +   +  + +
Sbjct: 180 ELTGSLDSGLRSVARETPSRELLSPFLLKFREHANQGSDALQGYLRMESRMLSHQRSRER 239

Query: 119 VQ-----ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHMLLGVAAAF 171
            +      L  E      ++ +L   + T++   +PG    +    +P    LL   +A 
Sbjct: 240 QRAGDYLELLAELFIVLLVLPALLVIIVTVMSVLAPGLSRPVPIPGEPTMRALLVYGSAA 299

Query: 172 MLI 174
            ++
Sbjct: 300 FVL 302



 Score = 39.3 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 49/159 (30%), Gaps = 11/159 (6%)

Query: 8   RTAKFL----DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIET---- 58
           R A+       +  + +  +   V  G P  +AV  +  +    P++++   +       
Sbjct: 386 RRARLDDAKDREIRDFVHAVAGHVSLGKPFDEAVQTVAEEVDFGPLQADVDDLAFRLGLT 445

Query: 59  --QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
                G +  E++ R V  +          +++    +G +       L   +    + +
Sbjct: 446 TGTRDGGTRREALDRFVERVGTPLSEQTVGLVTGALSVGSDAETTFETLQTEIGSLYHQR 505

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            K+++      A  W    L   +   V          L
Sbjct: 506 KKLRSAMAVYVAVGWTTALLVVGIVVAVNAYVLDGFAQL 544


>gi|302389892|ref|YP_003825713.1| Type II secretion system F domain protein [Thermosediminibacter
           oceani DSM 16646]
 gi|302200520|gb|ADL08090.1| Type II secretion system F domain protein [Thermosediminibacter
           oceani DSM 16646]
          Length = 377

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 48/164 (29%), Gaps = 9/164 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
            +       +   + +G+PV + ++V+  Q S   +    RRVI     G +LSE+    
Sbjct: 40  RELAVFCRQMASMLESGIPVIECLSVMCQQNSHPGLTRALRRVIRDLKRGFTLSEAFRNQ 99

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P               ++ G L + L  L+         + +++           +
Sbjct: 100 PGIFP-----EILIYTVETGEIAGCLEDILKKLAVHFETMAKYRERLKTSMTYPA---IL 151

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
                           P Y N+         ++      +   +
Sbjct: 152 GAVALVVFYYTSNNILPVYSNMFEESGVYLPVITRIFMSVSTNM 195



 Score = 35.5 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/136 (10%), Positives = 33/136 (24%), Gaps = 6/136 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
              ++   +  G+P+  A+ ++     + V     +V                +   +  
Sbjct: 248 LCRVLAILISCGIPLVKAIEIVESAQKNQVFKRDLQVALENLRIG------KNLAVSLRD 301

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +       G L E L   +                     A   +   + F
Sbjct: 302 SSFPPLMLKMLQVGIESGKLEEMLFKTADFYDSEVEDMQSRLLSIAGPAALILMSLIIGF 361

Query: 139 CVSTLVYFTSPGYMNV 154
            V ++V      Y + 
Sbjct: 362 AVISIVLPMFNIYSSF 377


>gi|226309727|ref|YP_002769621.1| hypothetical protein BBR47_01400 [Brevibacillus brevis NBRC 100599]
 gi|226092675|dbj|BAH41117.1| hypothetical membrane protein [Brevibacillus brevis NBRC 100599]
          Length = 304

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 59/154 (38%), Gaps = 2/154 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  + K+  A+  +  P    I+   V AG+P+  AV     +    +  E   +   + 
Sbjct: 149 LDRVDKRAKAEIREQVPIFFSIVQSLVEAGMPLQQAVKQTARRFDARLGRELASLEMGEK 208

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
              +  +++  +     +  ++  +  ++   + G ++S+ L+        ++  +A   
Sbjct: 209 RHGNWRKALEELAFRWEVDSLTTIALEMNEAMKKGVSISQMLSVQVEEQVRQQEDEAATH 268

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
              +  +   ++I  +   +  LV    P ++ +
Sbjct: 269 MNRLNIRLLPFVIMLMGLPLLFLV--MGPAFIGI 300


>gi|254282483|ref|ZP_04957451.1| general secretion pathway protein F [gamma proteobacterium NOR51-B]
 gi|219678686|gb|EED35035.1| general secretion pathway protein F [gamma proteobacterium NOR51-B]
          Length = 406

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 54/164 (32%), Gaps = 9/164 (5%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLS 66
           R      +       +   V + LP+ + +  +  Q+          +V      G +L+
Sbjct: 61  RRRLGAAEIALITRQLATLVASALPLDECLQAVAEQTRKSSTKALLLQVRSKVAEGYTLA 120

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            S+S+                +    +  G L+  L  L+    +R++   K+Q   +  
Sbjct: 121 SSMSQFPGAFGD-----MYRAMVHAGEQAGQLAPVLEQLADYTENRQHTAQKLQMAMIYP 175

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
                +  +    V+ L+ F  P  + +  +  +    L VA  
Sbjct: 176 LVLVAVAIA---VVAALMVFVVPELVGIFAHTQKDLPALTVALI 216



 Score = 35.9 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 45/131 (34%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMP 77
               +   + +G+P+ DA+ +     S+ V  +  R +      G SL+ ++++   + P
Sbjct: 275 FSSTLSILMASGVPLLDALRIAGAVMSNLVLQDSSRAVAVRVQEGSSLNRALAQEPFFPP 334

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         +    +  G+L   LA  +        M         E     ++ G + 
Sbjct: 335 M------MVHMVGSGEASGDLETMLARSANNQERELEMTLGTVMGLFEPLMVVFMGGLVL 388

Query: 138 FCVSTLVYFTS 148
             V  ++    
Sbjct: 389 AIVLAILLPIF 399


>gi|307327612|ref|ZP_07606797.1| Type II secretion system F domain protein [Streptomyces
           violaceusniger Tu 4113]
 gi|306886724|gb|EFN17725.1| Type II secretion system F domain protein [Streptomyces
           violaceusniger Tu 4113]
          Length = 305

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/184 (9%), Positives = 55/184 (29%), Gaps = 4/184 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             + R  +        L+ +     AG+ ++  +      +  P+ +  + + E    G+
Sbjct: 104 AAQARIERLE-ALGQWLNHLAGVHTAGISLTQTIRASAKAAPAPIAANVQALAERLRAGM 162

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAKVQAL 122
               + +     +          +    +      L++AL  L+  +  +      V+A 
Sbjct: 163 DAHAAFALFADELADGVSDHVVLLFQSHAVYKGPGLADALEALAITIHQQAADARDVEAD 222

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
             + + ++  +  +   V            +     P G ++L          +  +R +
Sbjct: 223 RAKVRKASRQVSVVICVVVIGCMLN--QAWSGWYASPLGQIVLAALGGAFAWTLSWLRRI 280

Query: 183 INFD 186
               
Sbjct: 281 ARTK 284


>gi|107021655|ref|YP_619982.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
 gi|116688601|ref|YP_834224.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
 gi|105891844|gb|ABF75009.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
 gi|116646690|gb|ABK07331.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
          Length = 403

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 44/138 (31%), Gaps = 6/138 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   ++AGLP++ ++ ++   ++ D V      +      G   +++++R      
Sbjct: 69  FTRQLASLLQAGLPLAPSLEMLARTRTRDGVPRIAAGLAREIVGGRRFADALARYPSQFG 128

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G+L   L  ++           K++A      A      ++ 
Sbjct: 129 -----TLYRQLIEVGEASGSLGIVLTRVAEHRERADAQWRKLRAALAYPAAVILFALAIS 183

Query: 138 FCVSTLVYFTSPGYMNVL 155
             +   V  T     +  
Sbjct: 184 AALMVWVVPTFRQIFDGF 201



 Score = 37.4 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 41/130 (31%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+P++DA A +   +           +      G+ L++++     +  
Sbjct: 273 WCRSLATLLGAGVPLADAFATLERTAGHPVFAHATAHIAARVLRGVRLADAMHSAGCFPD 332

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                         ++  G L   LA+++ +   + + +    A   E      +   + 
Sbjct: 333 DVVQP------IAVAEETGALDTMLADIAALCERQLDARLDTLAALGEPLIVIVLGALVG 386

Query: 138 FCVSTLVYFT 147
             V  +    
Sbjct: 387 GLVIAMYLPI 396


>gi|315654444|ref|ZP_07907352.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333]
 gi|315491479|gb|EFU81096.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333]
          Length = 408

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 56/176 (31%), Gaps = 14/176 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI----------ETQHLGLSLSESISRM 72
           I   + AG  +++A    + +    +     +               H     +   + +
Sbjct: 87  IATRLEAGASIANAWDTTLHRLDTRLDYAAIQAFVAHPRSGLWERLNHWRAGRTAETNPL 146

Query: 73  VRYMPLQEVSFFSTVISVQSQLGG----NLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
            R    +  +     + + +Q+       L+E L  ++  +       AK     +  KA
Sbjct: 147 ARVRHPEAAAQALRGMLIATQVATQVGAPLAEILNRVADGIAATLETAAKRHTAQVGPKA 206

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +A ++G LP     +  F     +++         +  +    M+ G +    MI 
Sbjct: 207 TARLLGVLPLAALGMAQFIGVDVIDMAFQGGINTWVFVIGLGLMVAGNLWSAAMIR 262


>gi|254180565|ref|ZP_04887163.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei
           1655]
 gi|184211104|gb|EDU08147.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei
           1655]
          Length = 405

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 42/153 (27%), Gaps = 6/153 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AGL ++ ++ ++   +    +      +      G   S ++ R  R   
Sbjct: 71  FARQLAGLLHAGLALAPSLELLAQATQRSEMPRVAAGLAREIVAGRQFSAALRRYPRQFD 130

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                 F   +    +  G L+  L  L+          A+V+       A      ++ 
Sbjct: 131 P-----FFCQLVAVGETAGALAAVLTRLADDRERAAAQYARVKGALAYPAAVLLFALAIT 185

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             +   V  T                   +A +
Sbjct: 186 AALLVWVVPTFEQIFAGFGAPLPAPTRFVLALS 218


>gi|330981426|gb|EGH79529.1| type II secretion system protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 400

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
               +    +   + AG P+  ++ +++ Q      ++   R+ E    G  LS ++   
Sbjct: 62  AALVSFTQQLATLLGAGQPLERSLGILLKQPGQSQTKALIERIREQVKAGKPLSVALEEE 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    S     +    + GG L   L  LS  L   + ++ +V    +      ++
Sbjct: 122 GSQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +  +   ++ L+ +  P ++ +  +   G  +  +    + +G  +
Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGEFL 217


>gi|319786553|ref|YP_004146028.1| general secretion pathway protein F [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465065|gb|ADV26797.1| general secretion pathway protein F [Pseudoxanthomonas suwonensis
           11-1]
          Length = 399

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 55/167 (32%), Gaps = 7/167 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
            D       +   + A  P+ +A+  I  QS    VR     V      G  L++++   
Sbjct: 61  KDLALFTRQLST-LAASAPLEEALRTIASQSDRRGVRRVVGAVHAQLLEGFRLADAMGSA 119

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R  P          +    +  G L + L  L+ +L  ++ ++ K+ A  +   A A  
Sbjct: 120 GRSFPP-----LYRAMVAAGESSGALPQILERLAGLLERQQQVRGKLVAALVYPAALAVT 174

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             ++   + T V        + L  +        +  +    G   +
Sbjct: 175 AVAVVIALMTFVVPRVVEQFDSLGRELPWLTRAVIGMSEFSRGWGWL 221



 Score = 43.6 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 41/131 (31%), Gaps = 5/131 (3%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
            +    +   + +GLP+ + + +     ++ V  +  R +           +  R     
Sbjct: 266 AHMARTLAIMLGSGLPLVEGLRITARTVNNRVLQQATRTMADSIHEGGSLSAAMRHAAVF 325

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
           P          ++   +  G+L+  L   +  L    +  A      +E      + G +
Sbjct: 326 PP-----TLLYMTSSGENSGHLAPMLERAADYLEREFDTFANAGMSLLEPVIIVALGGVV 380

Query: 137 PFCVSTLVYFT 147
              V +++   
Sbjct: 381 ALIVLSILLPI 391


>gi|126441895|ref|YP_001060517.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei
           668]
 gi|126221388|gb|ABN84894.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei
           668]
          Length = 405

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 42/153 (27%), Gaps = 6/153 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AGL ++ ++ ++   +    +      +      G   S ++ R  R   
Sbjct: 71  FARQLAGLLHAGLALAPSLELLAQATQRSEMPRVAAGLAREIVAGRQFSAALRRYPRQFD 130

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                 F   +    +  G L+  L  L+          A+V+       A      ++ 
Sbjct: 131 P-----FFCQLVAVGETAGALAAVLTRLADDRERAAAQYARVKGALAYPAAVLLFALAIT 185

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             +   V  T                   +A +
Sbjct: 186 AALLVWVVPTFEQIFAGFGAPLPAPTRFVLALS 218


>gi|76808777|ref|YP_334898.1| type IV pilus assembly protein PilC [Burkholderia pseudomallei
           1710b]
 gi|126451673|ref|YP_001067768.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei
           1106a]
 gi|134280494|ref|ZP_01767205.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei
           305]
 gi|242315079|ref|ZP_04814095.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei
           1106b]
 gi|254190995|ref|ZP_04897501.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254199040|ref|ZP_04905455.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei
           S13]
 gi|254262026|ref|ZP_04953080.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei
           1710a]
 gi|254299347|ref|ZP_04966797.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei
           406e]
 gi|76578230|gb|ABA47705.1| type IV pilus assembly protein PilC [Burkholderia pseudomallei
           1710b]
 gi|126225315|gb|ABN88855.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei
           1106a]
 gi|134248501|gb|EBA48584.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei
           305]
 gi|157808972|gb|EDO86142.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei
           406e]
 gi|157938669|gb|EDO94339.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169656870|gb|EDS88267.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei
           S13]
 gi|242138318|gb|EES24720.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei
           1106b]
 gi|254220715|gb|EET10099.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei
           1710a]
          Length = 405

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 42/153 (27%), Gaps = 6/153 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AGL ++ ++ ++   +    +      +      G   S ++ R  R   
Sbjct: 71  FARQLAGLLHAGLALAPSLELLAQATQRSEMPRVAAGLAREIVAGRQFSAALRRYPRQFD 130

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                 F   +    +  G L+  L  L+          A+V+       A      ++ 
Sbjct: 131 P-----FFCQLVAVGETAGALAAVLTRLADDRERAAAQYARVKGALAYPAAVLLFALAIT 185

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             +   V  T                   +A +
Sbjct: 186 AALLVWVVPTFEQIFAGFGAPLPAPTRFVLALS 218


>gi|255514159|gb|EET90421.1| type II secretion system protein [Candidatus Micrarchaeum
           acidiphilum ARMAN-2]
          Length = 344

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 60/168 (35%), Gaps = 5/168 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + + I  R  K      +   I   ++R+G+ +  ++ +           + + +     
Sbjct: 81  INYKIDDRKTKMEGMLSDYFQIASANLRSGIAMDRSLLLAARPEFKFFADDIKEMNRQIF 140

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G ++   +  +        +     ++    + GG +++ L  LS+ +R+++ M+ +V 
Sbjct: 141 SGQTMESGLKYLAGRYKSFTLDHAIRMMIEAQRYGGAMADLLDQLSKDIRNQQLMQKEVA 200

Query: 121 ALSMEAKASAWIIGSLPFCVST-----LVYFTSPGYMNVLINDPRGHM 163
                        G +   V       ++  T   +  +L ++P G  
Sbjct: 201 GQLFMYSIFIAFAGLVAAPVLYGLTSQMITITDAVWKGILASNPGGLP 248


>gi|53720618|ref|YP_109604.1| type IV pilus assembly protein PilC [Burkholderia pseudomallei
           K96243]
 gi|52211032|emb|CAH37020.1| type IV pilus assembly protein PilC [Burkholderia pseudomallei
           K96243]
          Length = 405

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 42/153 (27%), Gaps = 6/153 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AGL ++ ++ ++   +    +      +      G   S ++ R  R   
Sbjct: 71  FARQLAGLLHAGLALAPSLELLAQATQRSEMPRVAAGLAREIVAGRQFSAALRRYPRQFD 130

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                 F   +    +  G L+  L  L+          A+V+       A      ++ 
Sbjct: 131 P-----FFCQLVAVGETAGALAAVLTRLADDRERAAAQYARVKGALAYPAAVLLFALAIT 185

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             +   V  T                   +A +
Sbjct: 186 AALLVWVVPTFEQIFAGFGAPLPAPTRFVLALS 218


>gi|15668960|ref|NP_247764.1| hypothetical protein MJ_0779 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2833584|sp|Q58189|Y779_METJA RecName: Full=Uncharacterized protein MJ0779
 gi|1499599|gb|AAB98769.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 299

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 66/143 (46%), Gaps = 1/143 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L + +     ++ P AL I++ ++ +G  +++A+  +V  +   V   FR+V+       
Sbjct: 75  LYENKIETLENNIPQALYIMILALESGRSINEALLEVVKSNIKEVSDIFRKVLYLMENQK 134

Query: 64  -SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S  ES++ +      + +   + ++    + GG+LS++L  L++ L D K  K ++ ++
Sbjct: 135 LSFEESMTIVSNLYDSKVLRMLARIMIENRKYGGDLSDSLKILAKTLEDFKMYKRQLLSV 194

Query: 123 SMEAKASAWIIGSLPFCVSTLVY 145
           +    A  +II          + 
Sbjct: 195 TASGLAIGFIILCGVIPAVAALL 217


>gi|53726066|ref|YP_104076.1| type IV pilus biogenesis protein PilC [Burkholderia mallei ATCC
           23344]
 gi|52429489|gb|AAU50082.1| type IV pilus biogenesis protein PilC [Burkholderia mallei ATCC
           23344]
          Length = 377

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/153 (11%), Positives = 41/153 (26%), Gaps = 6/153 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AGL ++ ++ ++   +    +      +      G   S ++ R  R   
Sbjct: 43  FARQLAGLLHAGLALAPSLELLAQATQRSEMPRVAAGLAREIVAGRQFSAALRRYPRQFD 102

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                 F   +    +  G L+  L  L+          A+V+              ++ 
Sbjct: 103 P-----FFCQLVAVGETAGALAAVLTRLADDRERAAAQYARVKGALAYPATVLLFALAIT 157

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             +   V  T                   +A +
Sbjct: 158 AALLVWVVPTFEQIFAGFGAPLPAPTRFVLALS 190


>gi|171316226|ref|ZP_02905449.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
 gi|171098640|gb|EDT43437.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
          Length = 404

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/164 (9%), Positives = 45/164 (27%), Gaps = 6/164 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            +       +   ++AGLP++ ++ ++   ++ D +      +      G   + +++R 
Sbjct: 65  REVTRFTRQLASLLQAGLPLAPSLEMLARTRTRDGLPRIAAGLAREIVGGQRFAAALARY 124

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L  ++           K+ A      A    
Sbjct: 125 PSQFG-----TLYRQLIEVGEASGALGTVLTRVAEHRECADAQWRKLCAALAYPVAVIVF 179

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
             ++   +   V  T     +             +A +      
Sbjct: 180 ALAISAALMVWVVPTFRQIFDGFGAALPAPTRALLALSSATSAW 223



 Score = 37.8 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 41/130 (31%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+P++DA A +   +          ++      G  L++++     +  
Sbjct: 274 WCRSLATLLGAGVPLADAFATLERTAGHPVFEQATAQIAARVLRGARLADAMHAAGCFPD 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                         ++  G L   LA+++ +   + + +    A   E      +   + 
Sbjct: 334 DVVQP------IAVAEETGALDTMLADIAALCERQLDARLDALAALGEPLIVIVLGALVG 387

Query: 138 FCVSTLVYFT 147
             V  +    
Sbjct: 388 GLVIAMYLPI 397


>gi|167463709|ref|ZP_02328798.1| type II secretion system protein [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 288

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 71/159 (44%), Gaps = 8/159 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI----VGQSSDPVRSEFRRVI 56
           +   +KK+    L + P  L+ I+  V AG  V  +          +   P+++E  +  
Sbjct: 132 LDQKLKKKKHSILIELPEFLNKIILLVDAGETVQASFIRCIDDRAEKPLSPLQAELIKCK 191

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTV-ISVQSQLGGNLSEALANLSRILRDRKNM 115
               + +SL++S+  + R   +QE+S F+T  +    + G +L+ AL NLS+ L +R+  
Sbjct: 192 RELLMNVSLNKSLGELTRRCSMQEISMFTTTVLLNYKRGGHDLTVALRNLSKDLWERRKA 251

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
            +++      +K    +       +  +V   +P  M +
Sbjct: 252 VSRILGEEASSKL---VFPMALIFLIVIVIVAAPAMMMM 287


>gi|114566084|ref|YP_753238.1| type II secretion system protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114337019|gb|ABI67867.1| type II secretion system protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 402

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 9/148 (6%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +  + AG  +  A  V+  ++ +  ++    ++ +    G +L  ++S+  +    
Sbjct: 69  TRQFLAMLTAGFSIIKAFKVMGQKNRNRTLKKALLKIHDDIEQGQALWVALSQHPK---- 124

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
              S     +    ++GG L   L NLS  L   +++ AK++A S+       I      
Sbjct: 125 -VFSSIYINMIKAGEMGGTLETVLKNLSHHLEREQDINAKIKAASIYPL---IITLMALL 180

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLG 166
            +  ++ F  P ++NV  +      L  
Sbjct: 181 VIFFIISFIMPAFVNVFASAGAEIPLPT 208



 Score = 40.1 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 41/133 (30%), Gaps = 7/133 (5%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            +   I+   ++AG+P+  A+ V  G   ++ V    R+       G S+S  +      
Sbjct: 269 AHFARIMAILLQAGIPILQALEVAGGVVGNEVVIQAIRQAGREISEGKSISVPLEATA-- 326

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                       +    +  G+L    A ++            +   ++E     ++   
Sbjct: 327 ----IFDTMFAQMIAIGEESGSLDSMFAQIADYYEQEVIYTINILLAAVEPVMIIFVAIL 382

Query: 136 LPFCVSTLVYFTS 148
           +   +   +    
Sbjct: 383 VTGIIIATILPVF 395


>gi|45442609|ref|NP_994148.1| putative general protein secretion protein [Yersinia pestis biovar
           Microtus str. 91001]
 gi|229837690|ref|ZP_04457850.1| General secretion pathway protein F / Type IIsecretory pathway,
           component PulF [Yersinia pestis Pestoides A]
 gi|45437474|gb|AAS63025.1| putative general protein secretion protein [Yersinia pestis biovar
           Microtus str. 91001]
 gi|229704067|gb|EEO91079.1| General secretion pathway protein F / Type IIsecretory pathway,
           component PulF [Yersinia pestis Pestoides A]
          Length = 402

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 56/183 (30%), Gaps = 19/183 (10%)

Query: 5   IKKRTAKFLD----------DFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFR 53
           IKKR   F            D       I   V A +P+ + + ++  Q S   +    +
Sbjct: 44  IKKRILLFNKYVVKKNSNKTDLVLITRQIATLVNASMPLDEVLDIVGKQNSKSKMIEIIQ 103

Query: 54  RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
           R+      G S ++++S           S     +    ++ G+L   L  L+  +   +
Sbjct: 104 RIRVNIQEGHSFADALSPFPA-----VFSPLYKTMVTAGEVSGHLGLVLVRLADHIEQTQ 158

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
            ++ K+    +       ++      +  L+    P  +           L       + 
Sbjct: 159 KIQRKIIQALIYP---CVLVLISLSVIIILLTAVVPNIVEQFSFSETALPLSTKVLMILS 215

Query: 174 IGI 176
             I
Sbjct: 216 YSI 218


>gi|239624654|ref|ZP_04667685.1| type II secretion system protein [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521040|gb|EEQ60906.1| type II secretion system protein [Clostridiales bacterium
           1_7_47FAA]
          Length = 403

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 52/157 (33%), Gaps = 6/157 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVR 74
            P     +   + AG+P+S A+AV    +   P+R    R+ E+ H G +L E++  M  
Sbjct: 68  LPPLCRQLSAMLAAGVPLSHALAVSYESAQDGPLRDNLMRLRESIHKGSTLFEAMEEMPG 127

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
             P          +    +  G L   L  ++      + M  KV+A          +  
Sbjct: 128 VFPN-----LLVYMIQTGESSGKLDVMLGTMAEYYDREEEMNGKVRAAMTYPVILLGVTI 182

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
                + T V       M          +L+  +   
Sbjct: 183 MSSVFMLTTVLPQFASMMKEQELPLLTRVLMSASLGL 219


>gi|221213259|ref|ZP_03586234.1| type IV fimbrial assembly protein PilC [Burkholderia multivorans
           CGD1]
 gi|221166711|gb|EED99182.1| type IV fimbrial assembly protein PilC [Burkholderia multivorans
           CGD1]
          Length = 401

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/145 (8%), Positives = 39/145 (26%), Gaps = 6/145 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   ++AGLP++ A+ ++   ++   +      +      G   + +++  
Sbjct: 62  RDVTRFTRQLASLLQAGLPLAPALDMLSRTRTHGGLPRIAAGLAREIVDGQRFAAALALY 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +    L   L  ++           K++A           
Sbjct: 122 PSQFG-----TLYRQLIEVGEASSALGTVLMRIAEHRERADAQWRKLRAALAYPAVVILF 176

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIN 157
             ++   +   V  T     +    
Sbjct: 177 ALAIAAALMVWVVPTFRQIFDGFGT 201



 Score = 35.9 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 41/130 (31%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+P++DA A +   +          ++      G  L++++     +  
Sbjct: 271 WCRSLATLLGAGVPLADAFATLERTAGHPVFERASTQIAARVLRGARLADAMQASGCFPD 330

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                         ++  G L   LA+++ +   + + +    A   E      +   + 
Sbjct: 331 DIVQP------IAVAEETGALDTILADIATLSEHQLDARIDTLAALGEPLIVIVLGALVG 384

Query: 138 FCVSTLVYFT 147
             V  +    
Sbjct: 385 GLVIAMYLPI 394


>gi|302185193|ref|ZP_07261866.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           642]
          Length = 294

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 68/157 (43%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  + ++R  + + +    + ++     +G+ V  A+ V+  +       +  E R V+ 
Sbjct: 134 LAAVARRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLM 193

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL L E + +    + + E+S    +++     GG   ++L  L +++ DR+  + 
Sbjct: 194 RVDSGLELGEELRKTAALLDVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 253

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +     + AK S  ++  L   +  ++    PG+M +
Sbjct: 254 QEYISKLSAKMSVVMMVFLFPALLIVL--AGPGFMAI 288


>gi|264680614|ref|YP_003280524.1| type II secretion system protein [Comamonas testosteroni CNB-2]
 gi|262211130|gb|ACY35228.1| type II secretion system protein [Comamonas testosteroni CNB-2]
          Length = 317

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 56/144 (38%), Gaps = 5/144 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISR 71
           + P  +D++      G+ +   + VI          +  E +   +    G +   S  R
Sbjct: 168 ELPLFVDLLGLLQGTGMSLDQTLQVIGSDFGNVMPVLSREIQLANQQYSRGSTRERSFGR 227

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M        ++  ++++    + GG + E L      LR+++  K K     +  K +A 
Sbjct: 228 MSEVYQNDNLANLTSLMIQIDRYGGAVQEPLRIFGERLREQRKAKMKELIGKISVKMTAV 287

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL 155
           ++ +L   +   +    PG++ V+
Sbjct: 288 MVVTLLPALI--IITAGPGFLAVI 309


>gi|308185675|ref|YP_003929806.1| Protein transport protein hofC [Pantoea vagans C9-1]
 gi|308056185|gb|ADO08357.1| Protein transport protein hofC [Pantoea vagans C9-1]
          Length = 399

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/179 (11%), Positives = 52/179 (29%), Gaps = 19/179 (10%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           + +  +   ++AGLP+++++A++               +        LS +         
Sbjct: 63  DLILQLATLLKAGLPLAESLALLAEGHPHAGWRALMLALH----HRVLSGAPFSQALREW 118

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            Q        +    +L G L    + L++    +  +  +V            +  ++ 
Sbjct: 119 PQIFPPLYPALMEVGELTGQLDVCCSELAQQQIRQHQLWHQVAKALRYPLFILLVAIAVT 178

Query: 138 FCVSTLVYFTS-----------PGYMNVLINDPRGHM----LLGVAAAFMLIGIMVMRL 181
             +   V               P +   ++           +L    + ML G   +R 
Sbjct: 179 CGMLLFVLPEFVAVYDSFDAPLPAFTAAVMQLSAALQEWGGVLAFGISLMLAGWHQLRR 237


>gi|307730002|ref|YP_003907226.1| type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1003]
 gi|307584537|gb|ADN57935.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1003]
          Length = 353

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 57/144 (39%), Gaps = 5/144 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHLGLSLSESIS 70
           D+ P  +D++      GL +  ++ V+V         +  E          G +  +S++
Sbjct: 203 DELPMLVDLLRLLQGVGLSLDQSLQVMVNDFRGVLPVLSGELEIAQRQFAAGRTREQSLA 262

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           R+      +++     ++    + GG + E L      LR+ +    + +   M  K + 
Sbjct: 263 RLASSFDNEDLRAVVRLLIQVDRHGGAVQEPLKQFGDRLRETRRAMLRERIGRMAVKMTG 322

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNV 154
            +I +L   +  ++    PG ++V
Sbjct: 323 VMILTLLPAL--MIVTAGPGVLSV 344


>gi|22127078|ref|NP_670501.1| general protein secretion protein [Yersinia pestis KIM 10]
 gi|108806452|ref|YP_650368.1| putative general protein secretion protein [Yersinia pestis
           Antiqua]
 gi|108813178|ref|YP_648945.1| general protein secretion protein [Yersinia pestis Nepal516]
 gi|229840716|ref|ZP_04460875.1| General secretion pathway protein F [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842728|ref|ZP_04462882.1| General secretion pathway protein F [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|294503005|ref|YP_003567067.1| general protein secretion protein [Yersinia pestis Z176003]
 gi|21960132|gb|AAM86752.1|AE013921_3 putative general protein secretion protein [Yersinia pestis KIM 10]
 gi|108776826|gb|ABG19345.1| general protein secretion protein [Yersinia pestis Nepal516]
 gi|108778365|gb|ABG12423.1| putative general protein secretion protein [Yersinia pestis
           Antiqua]
 gi|229690208|gb|EEO82263.1| General secretion pathway protein F [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697082|gb|EEO87129.1| General secretion pathway protein F [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|262361040|gb|ACY57761.1| general protein secretion protein [Yersinia pestis D106004]
 gi|262364984|gb|ACY61541.1| general protein secretion protein [Yersinia pestis D182038]
 gi|294353464|gb|ADE63805.1| general protein secretion protein [Yersinia pestis Z176003]
 gi|320014114|gb|ADV97685.1| General secretion pathway protein F [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 348

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 51/163 (31%), Gaps = 9/163 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       I   V A +P+ + + ++  Q S   +    +R+      G S ++++S   
Sbjct: 10  DLVLITRQIATLVNASMPLDEVLDIVGKQNSKSKMIEIIQRIRVNIQEGHSFADALSPFP 69

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +    ++ G+L   L  L+  +   + ++ K+    +       ++
Sbjct: 70  A-----VFSPLYKTMVTAGEVSGHLGLVLVRLADHIEQTQKIQRKIIQALIYP---CVLV 121

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
                 +  L+    P  +           L       +   I
Sbjct: 122 LISLSVIIILLTAVVPNIVEQFSFSETALPLSTKVLMILSYSI 164


>gi|229829728|ref|ZP_04455797.1| hypothetical protein GCWU000342_01825 [Shuttleworthia satelles DSM
           14600]
 gi|229791717|gb|EEP27831.1| hypothetical protein GCWU000342_01825 [Shuttleworthia satelles DSM
           14600]
          Length = 464

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 50/153 (32%), Gaps = 10/153 (6%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---------GQSSDPVRSEFRR 54
            +K+R      D+P+ +  I   + AG+ V +A+  I          GQ+          
Sbjct: 306 AVKRRRENADRDYPSIISEIALYLSAGVTVKNALERISAAYEERRKQGQTGHEGYEALSL 365

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRK 113
           ++     G+S  ++        P       S ++     +    L+E      +   +  
Sbjct: 366 LVRRMKEGISERQAYEDWPGLCPTASYRKLSMLLIQNLQRGNRRLAELFEEEKQRAEEAG 425

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
            ++ K        +    ++G L   +  L+  
Sbjct: 426 RLRCKKLGDEASTRLLIPMVGLLAVVLMILLAP 458


>gi|148547559|ref|YP_001267661.1| type II secretion system protein [Pseudomonas putida F1]
 gi|148511617|gb|ABQ78477.1| type II secretion system protein [Pseudomonas putida F1]
          Length = 396

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 65/179 (36%), Gaps = 13/179 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           ++ +  +R A F  D       +   + AGLP+ DA+  +  +S     R     ++   
Sbjct: 47  LRSMAWRREAAF--DLVLFSQELSTLLNAGLPLIDALESLAEKSPAATARKVLAELVRQL 104

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           + G SLS+++ +  R  P          +   S+  G L +AL       +    ++ K+
Sbjct: 105 YEGRSLSQALGQQPRVFPP-----LYVALVQSSERTGALGDALTRYISYRQRLDLVRQKL 159

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
              S+       + G +   +   V          +     G  L  ++   M +G+ +
Sbjct: 160 VGASVYPLLLLLVGGGVVLFLLGYVVPRFSQVFEGM-----GTELPWLSRVLMQVGLFL 213


>gi|291541366|emb|CBL14477.1| hypothetical protein RO1_43290 [Roseburia intestinalis XB6B4]
          Length = 309

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 64/185 (34%), Gaps = 2/185 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++            +   AL II  +      +  +V   +   + PV++ F   +    
Sbjct: 120 IRLTASHFKKDVSSELETALSIITTAYLRSEDILTSVEENLEYLNPPVKTVFADFVSRIR 179

Query: 61  L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           L    L  ++  +   +       +   +        +L   L  +   L D + + A++
Sbjct: 180 LIDPDLEAALEELKGKIENDVFMEWVDALKSCL-YDRSLKTTLTPIVVKLSDMRIVNAEL 238

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           + L  E +     +  L      L+YF +  + + L++   G ++L V  A + +    +
Sbjct: 239 EYLVFEPRKEFITMVVLAVGNIPLLYFLNQSWYDTLMHTIPGQIMLAVIGAIIFVSTACV 298

Query: 180 RLMIN 184
             +  
Sbjct: 299 IKLTK 303


>gi|167825910|ref|ZP_02457381.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei 9]
          Length = 387

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/153 (11%), Positives = 41/153 (26%), Gaps = 6/153 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AGL ++ ++ ++   +    +      +      G   S ++ R  R   
Sbjct: 53  FARQLAGLLHAGLALAPSLELLAQATQRSEMPRVAAGLAREIVAGRQFSAALRRYPRQFD 112

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                 F   +    +  G L+  L  L+          A+V+              ++ 
Sbjct: 113 P-----FFCQLVAVGETAGALAAVLTRLADDRERAAAQYARVKGALAYPATVLLFALAIT 167

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             +   V  T                   +A +
Sbjct: 168 AALLVWVVPTFEQIFAGFGAPLPAPTRFVLALS 200


>gi|302390459|ref|YP_003826280.1| Type II secretion system F domain protein [Thermosediminibacter
           oceani DSM 16646]
 gi|302201087|gb|ADL08657.1| Type II secretion system F domain protein [Thermosediminibacter
           oceani DSM 16646]
          Length = 404

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 61/150 (40%), Gaps = 9/150 (6%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65
           +R  K   D       +   + AGLP+  A+ ++  Q+ +  +R     ++ +   G + 
Sbjct: 58  RRVGK--QDLAVFCRQLATMLGAGLPIVPALQILAMQAENKILRRNIEEIVRSLEGGETF 115

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E+++R+  + P+   +  +  +      GG+L EAL  L+  L     ++ KV++    
Sbjct: 116 HEALARLQVFPPIMVHAIEAAEL------GGSLDEALEELAAHLEREHELQEKVKSALTY 169

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                 +  ++   +   V       +N L
Sbjct: 170 PALVVSVALAVLIVLLVFVLPAFQNMLNAL 199


>gi|254515202|ref|ZP_05127263.1| general secretion pathway protein F [gamma proteobacterium NOR5-3]
 gi|219677445|gb|EED33810.1| general secretion pathway protein F [gamma proteobacterium NOR5-3]
          Length = 406

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 54/161 (33%), Gaps = 6/161 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   V++ LP++D +     Q+    +++   +V      G +L+ +++  
Sbjct: 67  ADLALLTRQLATLVQSNLPLADCLQAAAEQTRRPRIKAMLLQVRSRVSEGHTLAYAMAEF 126

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    +     +    +  G L   L  L+     R++   +++   +       +
Sbjct: 127 PLA-----FNEMYRAMVTAGEHAGFLGPVLEQLADYAERRQHSGQQLRMAMIYPFILLAV 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             ++   +   V     G  +    +  G  +  +AA+   
Sbjct: 182 AVAVIVALMVFVVPELIGIFSQSNRELPGLTVALIAASDFF 222



 Score = 35.5 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 43/131 (32%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + +G+P+ +A+ +      +  +R+E   V      G SLS ++     + P
Sbjct: 275 FASTLSILMASGVPLLEALRIAGQVLVNLVLRAESEDVALRVQEGSSLSRALGNAGHFPP 334

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         +    +  G+L + L   +        M         E     ++ G + 
Sbjct: 335 M------MVHMVASGESSGSLEDMLERSANNQERELEMTLGTVMGLFEPLMVVFMGGMVL 388

Query: 138 FCVSTLVYFTS 148
             V  ++    
Sbjct: 389 LIVLAILLPIF 399


>gi|116626806|ref|YP_828962.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229968|gb|ABJ88677.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 404

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/186 (10%), Positives = 61/186 (32%), Gaps = 17/186 (9%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
                +R              +   + AG+P+  ++++    +     R     V+    
Sbjct: 58  SFRKGRRRDIL-----FFTQELSTLLNAGVPLDRSLSITAELTEKPAFRFIVLDVLRVLK 112

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +L++S++           S     +    +  G L+     L+   R R +++  + 
Sbjct: 113 GGRTLADSLATHPE-----YFSDLYVNMVRAGEASGALAIIFERLAEFERTRDDLRNYII 167

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGIM 177
           +  +     A +  +    ++ L+ F  P +  +  +      L   + +  + ++    
Sbjct: 168 SSMIYPALLACVGLAS---ITLLLTFVVPRFATIFSDSTMKIPLPTKIMLDVSNVVTAWW 224

Query: 178 VMRLMI 183
            +  + 
Sbjct: 225 WVAALA 230


>gi|330959999|gb|EGH60259.1| hypothetical protein PMA4326_15689 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 294

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 67/157 (42%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +    K+R  + + +    + ++     +G+ V  A+ V+  +       +  E R V+ 
Sbjct: 134 LAVAAKRRQKQVVLEISTFIPLLRILFESGMAVEQALRVLSSEGKELLPVLSDEIRVVLT 193

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL L E + +    + + E+S    +++     GG   ++L  L +++ DR+  + 
Sbjct: 194 RVDSGLELGEELRKTAALLAVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 253

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +     + AK S  ++  L   +  ++    PG++ +
Sbjct: 254 QEYISKLSAKMSMVMMAFLFPALLIVL--AGPGFIAI 288


>gi|322434575|ref|YP_004216787.1| Type II secretion system F domain protein [Acidobacterium sp.
           MP5ACTX9]
 gi|321162302|gb|ADW68007.1| Type II secretion system F domain protein [Acidobacterium sp.
           MP5ACTX9]
          Length = 399

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 54/176 (30%), Gaps = 20/176 (11%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMPLQ 79
              +  ++AGLP+  ++ ++  +            V      G S+S +           
Sbjct: 67  QQFLTLIKAGLPILGSLDLLARRQKVLNFRAQLEDVATRVKTGESISSAFEAQG------ 120

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                 T   +  +  GNL E L       R     + K++A  +       ++  L   
Sbjct: 121 GFPIVYTTTLLAGERSGNLEEVLQRFLDFQRVSLTFRKKLKASLIYPSLLIVMVIGLFIF 180

Query: 140 VSTLVYFTSPGYMNVLINDPRGHML-------------LGVAAAFMLIGIMVMRLM 182
           + T V        + L        +             L VAA   L+G ++ R M
Sbjct: 181 LITFVVPRFAQLYDQLNTHLPALTVFLLDLGRNAQTYGLYVAAVVGLVGYLIYRWM 236


>gi|257069699|ref|YP_003155954.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810]
 gi|256560517|gb|ACU86364.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810]
          Length = 361

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 65/177 (36%), Gaps = 5/177 (2%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R +    +  + ++ +   + +G  +  A A +     D    +  R   +       +
Sbjct: 33  RRESTGPLEMAHLVEQLATVISSGAGLRQAWAALGRSLPDGELRDLARAAASGADPRRAA 92

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +  R         ++  ST ++V  + G   +  L +L+  LRD  +     +      
Sbjct: 93  SARLRRTEM-----IASLSTALAVCERTGAPTAGMLQHLADALRDLHDAAQARRTAFAGP 147

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           +++A I+  LP     L        + +L+    G++L     A   +G   MR ++
Sbjct: 148 RSTARILLILPLAGLGLGMLLGGDPLRLLLTSGAGNLLALTGLALTALGWWWMRRLV 204


>gi|34556964|ref|NP_906779.1| MSHA biogenesis protein MshG [Wolinella succinogenes DSM 1740]
 gi|34482679|emb|CAE09679.1| MSHA BIOGENESIS PROTEIN MSHG [Wolinella succinogenes]
          Length = 415

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 68/195 (34%), Gaps = 27/195 (13%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLG 62
           +  K   K  D  P A   +   + AG+ +   +  +IV  +++ ++  FR V+   + G
Sbjct: 64  IRGKNRVKLEDMIP-AFRQMSLMLNAGISIHATIEDLIVFSANERLKLIFRDVLSGINSG 122

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            SLSE+          +++   S  +    +  G+LS ALA L+  L + ++  AK +  
Sbjct: 123 KSLSEAFGA-----YQEDLGSLSLSLISLGEQTGSLSHALAMLAETLEEIRSNMAKFKKA 177

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR----------------GHMLLG 166
                     +      +  +V        +    +                  G M+L 
Sbjct: 178 LRYPTMVIGAMAIAFVLLIVMVIPKFKAIFDSFNAELPLPTRFLLQTEHILSNYGWMILA 237

Query: 167 VAAAFMLIGIMVMRL 181
                   G+  ++ 
Sbjct: 238 GLIT----GVWWIKR 248


>gi|329947749|ref|ZP_08294766.1| hypothetical protein HMPREF9056_02681 [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328523577|gb|EGF50673.1| hypothetical protein HMPREF9056_02681 [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 219

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 41/100 (41%)

Query: 85  STVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144
                + + LG  L++ L  ++  + +  + +A  +A     + +A ++  LP     L 
Sbjct: 21  VASCRLSTALGAPLADILEAVAGGVAESGHAEASRRAALAGPRTTARLLACLPVVGLGLG 80

Query: 145 YFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                    +L++   G  +  +    M++G +V R +I 
Sbjct: 81  MLVGADPTALLLDGGLGSAVGVLGIVLMVVGHLVTRRLIR 120


>gi|170023255|ref|YP_001719760.1| type II secretion system protein [Yersinia pseudotuberculosis
           YPIII]
 gi|169749789|gb|ACA67307.1| type II secretion system protein [Yersinia pseudotuberculosis
           YPIII]
          Length = 400

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 56/183 (30%), Gaps = 19/183 (10%)

Query: 5   IKKRTAKFLD----------DFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFR 53
           IKKR   F            D       I   V A +P+ + + ++  Q S   +    +
Sbjct: 42  IKKRILLFNKYVVKKNSNKTDLVLITRQIATLVNASMPLDEVLDIVGKQNSKSKMIEIIQ 101

Query: 54  RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
           R+      G S ++++S           S     +    ++ G+L   L  L+  +   +
Sbjct: 102 RIRVNIQEGHSFADALSPFSA-----VFSPLYKTMVTAGEVSGHLGLVLVRLADHIEQTQ 156

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
            ++ K+    +       ++      +  L+    P  +           L       + 
Sbjct: 157 KIQRKIIQALIYP---CVLVLISLSVIIILLTAVVPNIVEQFSFSETALPLSTKVLMILS 213

Query: 174 IGI 176
             I
Sbjct: 214 YSI 216


>gi|313107717|ref|ZP_07793899.1| putative type II secretion system protein [Pseudomonas aeruginosa
           39016]
 gi|310880401|gb|EFQ38995.1| putative type II secretion system protein [Pseudomonas aeruginosa
           39016]
          Length = 395

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 72/177 (40%), Gaps = 13/177 (7%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQH 60
           ++L  +R  K  ++   A+  +   + AG+ ++DAV      +    + S  + +     
Sbjct: 46  RNLGSRRRLK-AEELNMAIHELATMLAAGVSMADAVEAQERGARHPKLISALQAMANGLR 104

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S    +          ++  +   +    ++ GNL+ AL + +  +   +  +A++Q
Sbjct: 105 QGQSFPVVLESAGL-----DLPRYVYQLVAAGEMTGNLAGALRDCATQMEYERRTRAELQ 159

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
              +       ++ S    V+TL  F  P + N+L    +   L  +A A + IG+ 
Sbjct: 160 GALIYPA---ILVLSGVLAVATLFVFVVPKFANLLNETAQ---LPWLAWAVLSIGVW 210


>gi|15597872|ref|NP_251366.1| type II secretion system protein [Pseudomonas aeruginosa PAO1]
 gi|296388862|ref|ZP_06878337.1| type II secretion system protein [Pseudomonas aeruginosa PAb1]
 gi|9948747|gb|AAG06064.1|AE004695_17 probable type II secretion system protein [Pseudomonas aeruginosa
           PAO1]
          Length = 395

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 72/177 (40%), Gaps = 13/177 (7%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQH 60
           ++L  +R  K  ++   A+  +   + AG+ ++DAV      +    + S  + +     
Sbjct: 46  RNLGSRRRLK-AEELNMAIHELATMLAAGVSMADAVEAQERGARHPKLISALQAMANGLR 104

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S    +          ++  +   +    ++ GNL+ AL + +  +   +  +A++Q
Sbjct: 105 QGQSFPVVLESAGL-----DLPRYVYQLVAAGEMTGNLAGALRDCATQMEYERRTRAELQ 159

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
              +       ++ S    V+TL  F  P + N+L    +   L  +A A + IG+ 
Sbjct: 160 GALIYPA---ILVLSGVLAVATLFVFVVPKFANLLNETAQ---LPWLAWAVLSIGVW 210


>gi|302535289|ref|ZP_07287631.1| predicted protein [Streptomyces sp. C]
 gi|302444184|gb|EFL16000.1| predicted protein [Streptomyces sp. C]
          Length = 306

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 64/170 (37%), Gaps = 3/170 (1%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR---VIETQHLGLSLSESISRMVR 74
                +V  +RAG     A+ V + +++            V+     G  ++ ++ +  R
Sbjct: 133 ELCGAVVGELRAGAQPGRALTVAIRRTAAGPGGPGAAETGVLAAAAFGGDVAGALHQAAR 192

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
               + ++  +    V    G  L+  L  L   LR  ++ +  ++A    A+++  ++ 
Sbjct: 193 EPGARGLAGMAACWRVSVDGGAGLAAGLDRLEGALRAERDREESLRAQLAGARSTTVVLA 252

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            LP     +        + VL++ P G   L        +G++  R ++ 
Sbjct: 253 LLPLVGLLMGTALGADPLRVLLHSPVGWGCLLAGGLLETLGLLWCRRIVR 302


>gi|146307946|ref|YP_001188411.1| general secretion pathway protein F [Pseudomonas mendocina ymp]
 gi|145576147|gb|ABP85679.1| general secretion pathway protein F [Pseudomonas mendocina ymp]
          Length = 405

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 45/164 (27%), Gaps = 6/164 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   V+A LP+ +A+       ++  ++     V      G SL+ S+   
Sbjct: 66  RDLALVTRQLATLVQAALPIEEALRAAAAQSTNARIQGMLLAVRARVLEGHSLAGSLREF 125

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P               +  G+L   L  L+     R+  + KVQ   +        
Sbjct: 126 PAAFP-----ELYRATVAAGEHAGHLGPVLEQLADYTEQRQQSRQKVQLALLYPLILMCA 180

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
              +   +   V                    + +A +  +   
Sbjct: 181 SLLIVGFLLGYVVPDVVKVFVDSGQTLPTLTRVLIAVSDWVKAW 224



 Score = 38.2 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 46/130 (35%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +    R+G+P+ +A+A+      + V   E     +    G SL+ S+    ++ P
Sbjct: 274 FASTLAILTRSGVPLVEALAIAGEVIGNRVIRGEVLVAAQKVREGGSLTRSLEATGQFPP 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         +    +  G L + LA  ++   +  + +  +     E     ++   + 
Sbjct: 334 M------MLHMIASGERSGELDQMLARTAKNQENDLSAQIALLVGLFEPFMLVFMGAVVL 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 VIVLAILLPI 397


>gi|167904369|ref|ZP_02491574.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei
           NCTC 13177]
          Length = 387

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 42/153 (27%), Gaps = 6/153 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AGL ++ ++ ++   +    +      +      G   S ++ R  R   
Sbjct: 53  FARQLAGLLHAGLALAPSLELLAQATQRSEMPRVAAGLAREIVAGRQFSAALRRYPRQFD 112

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                 F   +    +  G L+  L  L+          A+V+       A      ++ 
Sbjct: 113 P-----FFCQLVAVGETAGALAAVLTRLADDRERAAAQYARVKGALAYPAAVLLFALAIT 167

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             +   V  T                   +A +
Sbjct: 168 AALLVWVVPTFEQIFAGFGAPLPAPTRFVLALS 200


>gi|15605299|ref|NP_220085.1| general secretion pathway protein F [Chlamydia trachomatis
           D/UW-3/CX]
 gi|3329011|gb|AAC68172.1| Gen. Secretion Protein F [Chlamydia trachomatis D/UW-3/CX]
          Length = 391

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/193 (12%), Positives = 59/193 (30%), Gaps = 15/193 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           ++ + ++       +       +V  +R+G+ + DA+  +  Q     +      ++E  
Sbjct: 42  IRKVRERNYRVTTTELVIFTKQLVLLLRSGISLYDALTSLRDQYQGRALAGVLTSLMEAL 101

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G   SE+++R            F        +  GNL  AL N+ ++L +++ +   +
Sbjct: 102 RSGGVFSEALARFP-----HIFDSFYQNSVRSGESIGNLEGALMNIIKVLEEKEKLSKSL 156

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG---------VAAA 170
            A             ++       V  T       +        +               
Sbjct: 157 AAALSYPVILLVFSCAVVVFFLIGVIPTLKETFEDMEMTRLTKAVFSCSTWFCRYKFLVL 216

Query: 171 FMLIGIMVMRLMI 183
              IG  +   ++
Sbjct: 217 LGGIGGAISLRIV 229


>gi|269798144|ref|YP_003312044.1| type II secretion system protein [Veillonella parvula DSM 2008]
 gi|269094773|gb|ACZ24764.1| type II secretion system protein [Veillonella parvula DSM 2008]
          Length = 391

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 53/159 (33%), Gaps = 13/159 (8%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           +    +   + +G+P+  A+ ++       + +     IE              + + + 
Sbjct: 60  DVTYQLGLLIESGVPLRRALQLLCQGKRGLLYTALYESIERGQT----------LSQALR 109

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +     +  +    +  G L E+L  +SR     + +K KV +         +++  + 
Sbjct: 110 SEGCPPIALALLESGEAAGTLGESLQYISRHYDWERQLKQKVISAISYPL---FLLLMMN 166

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
                 + F  P + NV         L+  A   +  G+
Sbjct: 167 IFFLVTILFIIPSFENVFTTMHITLPLMTRALFVLGQGL 205


>gi|152985154|ref|YP_001346798.1| general secretion pathway protein F [Pseudomonas aeruginosa PA7]
 gi|150960312|gb|ABR82337.1| general secretion pathway protein F [Pseudomonas aeruginosa PA7]
          Length = 405

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 9/155 (5%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPL 78
              +   V+A LP+ + ++ +  Q     R      +      G  L+ ++    R  P 
Sbjct: 72  TRQLATLVQAALPLEEVLSAVAAQCEKRSRQGMLLAIRSRVLEGHGLARAMGEFPRAFP- 130

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                         +  G+L + L  L+     R+  + ++Q   +       ++ +   
Sbjct: 131 ----ALYRATVAAGERAGHLGQVLMQLADYTEARQAARQQIQLAMLYPG---ILLLAAFG 183

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
            V  L+ F  P  + V I+  +   +L      + 
Sbjct: 184 IVGFLLGFVVPDVVKVFIDSGQELPVLTRGLIALS 218



 Score = 39.3 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 44/130 (33%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
            +  +    R+G+P+ DA+ +     ++       + V  +   G  L+ ++ R   + P
Sbjct: 274 FVSTLAILGRSGVPLVDALEIAAEVVANQQIRTGLKDVARSVREGGGLTRALERSGHFPP 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         +    +  G L   L   +R    +   +  +     E     ++  S+ 
Sbjct: 334 M------MLYMIASGERSGELDAMLDRAARQQEAQLANRIAMLVGLFEPAMLVFMGASVL 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 LIVLAILMPI 397


>gi|172041535|ref|YP_001801249.1| hypothetical protein cur_1856 [Corynebacterium urealyticum DSM
           7109]
 gi|171852839|emb|CAQ05815.1| putative membrane protein [Corynebacterium urealyticum DSM 7109]
          Length = 386

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 59/208 (28%), Gaps = 31/208 (14%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            +++R  +   D  ++     R V AG  V+DAV                         L
Sbjct: 31  RVQRRQLELFRDLADSC---AREVAAGARVADAVESAAADCEGDEADAEGDTGTRLGGQL 87

Query: 64  SLSESISRMVRYMP----------------------------LQEVSFFSTVISVQSQLG 95
           +L  +  R+                                  Q+V  F  +  +  + G
Sbjct: 88  ALVAAQVRLGALPTAALRDRGEVGSEGDRDGASTGNGSAELVAQDVEEFCELWELAERTG 147

Query: 96  GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            + +    ++   L      + K  A    A+ +  ++ ++P     +          +L
Sbjct: 148 MSFAPLADSIVADLEAHSAQQEKTAAAMAGARLTEVLLLAMPVGAVGIGQSMGLDPGGIL 207

Query: 156 INDPRGHMLLGVAAAFMLIGIMVMRLMI 183
                G  LL V A     G++    + 
Sbjct: 208 FGSVIGLGLLLVGAMLACTGVLWTEALT 235


>gi|296130610|ref|YP_003637860.1| hypothetical protein Cfla_2776 [Cellulomonas flavigena DSM 20109]
 gi|296022425|gb|ADG75661.1| conserved hypothetical protein [Cellulomonas flavigena DSM 20109]
          Length = 243

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 60/172 (34%), Gaps = 14/172 (8%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAV-AVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
           +D  + L  +   VRAG P   A  AV+    +  V +             + + + + +
Sbjct: 80  EDLASVLHAVSARVRAGAPPGAAWGAVLGQTVTGDVPAVEALTAVVGDRSATRARARAVV 139

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                  E              G  L++ L +L+  +        ++++     +A+A +
Sbjct: 140 AGAHVAAE-------------TGAPLADVLEHLADAVAADAEQAGELESALAGPRATARV 186

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + +LP     +         +VL +   G  +       ++ G + ++ ++ 
Sbjct: 187 LAALPVLGLLVGAGMGARPWDVLTDGGFGSAVAVTGVGLLVAGQVWVQALLR 238


>gi|167847396|ref|ZP_02472904.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei
           B7210]
 gi|167895984|ref|ZP_02483386.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei
           7894]
 gi|167912629|ref|ZP_02499720.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei
           112]
 gi|167920597|ref|ZP_02507688.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei
           BCC215]
          Length = 387

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 42/153 (27%), Gaps = 6/153 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AGL ++ ++ ++   +    +      +      G   S ++ R  R   
Sbjct: 53  FARQLAGLLHAGLALAPSLELLAQATQRSEMPRVAAGLAREIVAGRQFSAALRRYPRQFD 112

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                 F   +    +  G L+  L  L+          A+V+       A      ++ 
Sbjct: 113 P-----FFCQLVAVGETAGALAAVLTRLADDRERAAAQYARVKGALAYPAAVLLFALAIT 167

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             +   V  T                   +A +
Sbjct: 168 AALLVWVVPTFEQIFAGFGAPLPAPTRFVLALS 200


>gi|329928959|ref|ZP_08282769.1| type II secretion system protein F domain protein [Paenibacillus
           sp. HGF5]
 gi|328937211|gb|EGG33638.1| type II secretion system protein F domain protein [Paenibacillus
           sp. HGF5]
          Length = 290

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 71/158 (44%), Gaps = 7/158 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIE 57
           +   +  R    + + P  L+ IV  V AG  V  A+   V     +S P+ +E +R++ 
Sbjct: 134 LHKKVTLREQDIVMELPELLNKIVLLVGAGETVQRAIIHCVERNKDTSHPLYAELKRMVL 193

Query: 58  TQHLGLSLSESISRMVRYMPLQEVS-FFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
               G    ++  +  +   +QEVS F +TV+    + G +   AL +LSR+L +++   
Sbjct: 194 EWEGGHPFQQAFEQFNKRCGVQEVSIFTTTVLLNFRRGGNDFVLALRDLSRVLWEKRKAI 253

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
            + +     +K    ++  +   +  +V   +P +M +
Sbjct: 254 TRTRGEQASSKL---VLPMVVIFMIVIVLLGAPAFMMM 288


>gi|326565934|gb|EGE16095.1| type IV pilus assembly protein PilC [Moraxella catarrhalis
           103P14B1]
 gi|326575416|gb|EGE25341.1| type IV pilus assembly protein PilC [Moraxella catarrhalis
           101P30B1]
          Length = 419

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/174 (9%), Positives = 58/174 (33%), Gaps = 7/174 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71
                 +L  +   + +G+ ++DA+ +     ++  + ++  ++ +    G + +++I+ 
Sbjct: 80  NKQILLSLRTLATLLTSGVVLTDALDIAAKTTTNGRLSNKLIQIKQCIEQGENFTQAIAS 139

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              +         +  +    +  G L   L   +     +   ++++        A A 
Sbjct: 140 HPEFG------SLALALIDAGEKSGTLDIMLERAAEHAEQQALRQSQLNQALRYPAAIAL 193

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
               +   +   V  +       + N+     L  ++ +  L       L++  
Sbjct: 194 TSLIVSTVMLLKVVPSFAASFGNMGNELPTITLWVLSLSQWLSANFWQLLLVAI 247


>gi|297159257|gb|ADI08969.1| hypothetical protein SBI_05849 [Streptomyces bingchenggensis BCW-1]
          Length = 268

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 39/130 (30%), Gaps = 3/130 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
              P A D++   + AG     A   +      P+     +      LG   S +  RM 
Sbjct: 125 RQLPLAADLLTACLEAGAGPYKAAEAVGRSLGGPIGERLAQAAAELRLGGEPSAAWGRMG 184

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                  ++     +      G    E+++ L+   R  +  +A  +       A+A + 
Sbjct: 185 ALPGAHGLAR---ALERAGTTGAPAVESMSRLAADCRAEQGRQADKRVERATVLATAPLG 241

Query: 134 GSLPFCVSTL 143
                    +
Sbjct: 242 ACYLPAFLLI 251


>gi|154151924|ref|YP_001405542.1| type II secretion system protein [Candidatus Methanoregula boonei
           6A8]
 gi|154000476|gb|ABS56899.1| type II secretion system protein [Methanoregula boonei 6A8]
          Length = 610

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 72/184 (39%), Gaps = 4/184 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQH 60
            + + R +K   D P A+  + +++   +   + V  I  +    + V  EF +V+    
Sbjct: 104 MIARGRKSKIDLDLPYAVSYM-QALSTTMSPFEVVKRIYEEKAMFNEVSLEFGQVVRDVE 162

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           L    L  ++  + +  P      F   + V  + GG+++  L+  +    ++   +  +
Sbjct: 163 LFGDDLITALHNLQKTTPSPLFRDFVNDLGVVYESGGDITAYLSAKTEFFHEQAKRELDL 222

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
              ++E  A  ++   +   ++ ++   + G  +          +  V     +I I ++
Sbjct: 223 LLKTIEIMAEVYVSAFVAGPIALIIMIVAQGMTSAATMTWLVPFMYLVIPVGAIIMIWML 282

Query: 180 RLMI 183
            LM+
Sbjct: 283 SLML 286



 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 48/147 (32%), Gaps = 4/147 (2%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
             ++ P  L  +   +  GL + DA+  I       + SE   V      G  ++ ++ R
Sbjct: 409 VENNIPEFLRELSDMIDIGLTLPDAIHRISNAKLGLLSSELAIVSRDVSTGAYVNSALVR 468

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   + +  V    +++   S++  NL +              ++++             
Sbjct: 469 MEERIGVISVKRAISLLVKASEVTSNLRDIFVIAITDFEHYLKLRSE----RANTAIVYV 524

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLIND 158
           +I  L F +     +   G      + 
Sbjct: 525 MIIYLSFGIYLYTAYQLNGPFMSSFSS 551


>gi|114571319|ref|YP_757999.1| type II secretion system protein [Maricaulis maris MCS10]
 gi|114341781|gb|ABI67061.1| type II secretion system protein [Maricaulis maris MCS10]
          Length = 400

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 59/169 (34%), Gaps = 14/169 (8%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
             +  + +   + A L + DA+A +   ++   +R    R+      G SLS S+     
Sbjct: 65  IADFTEDLAELLGAALSIHDALASLAEGETRRRLREFILRLEARVRGGHSLSASMKADPA 124

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
             P          ++   +  G L+  L++L+   R  + +K  +            ++ 
Sbjct: 125 TPP-----RILVAMTAAGEESGQLAATLSDLAVRFRAEQALKRDLAGQLAYPA---VLVC 176

Query: 135 SLPFCVSTLVYFTSPGYMNVLIND-----PRGHMLLGVAAAFMLIGIMV 178
            +   +  L +   P +  V  +      P    ++GV A      I +
Sbjct: 177 LIYLTLVFLAFIVLPQFEIVFADSAIEPPPETQFVIGVGAFLRTYAIWI 225


>gi|78066135|ref|YP_368904.1| Flp pilus assembly protein TadC [Burkholderia sp. 383]
 gi|77966880|gb|ABB08260.1| Flp pilus assembly protein TadC [Burkholderia sp. 383]
          Length = 332

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 55/147 (37%), Gaps = 5/147 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQHLGLSLSES 68
              + P  +D++      GL +  ++ V+V         +  E          G +  +S
Sbjct: 180 ISAELPLLVDMLRLLQGVGLSLDQSIQVVVHDFQTMLPVLSWELAVAQRQFAAGRTREQS 239

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           + R+      +++     ++    + GG + E L      LR+ +    + Q   +  K 
Sbjct: 240 LQRLTNSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREGRRATLREQIGRLTVKM 299

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  +I +L   +  L+    PG M VL
Sbjct: 300 TGVMIVTLLPAL--LIVTAGPGVMTVL 324


>gi|332535168|ref|ZP_08410975.1| general secretion pathway protein F [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332035387|gb|EGI71887.1| general secretion pathway protein F [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 411

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 43/135 (31%), Gaps = 6/135 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   +++ LPV  AV  +  Q     ++     V      G +L++ +S 
Sbjct: 70  TSDLALITRQLATLIQSALPVEGAVMAVAEQCEKPRLKRMLMSVRSKVVEGYTLADGLSE 129

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    +  G+L + L  L+     R++M++++    +       
Sbjct: 130 FP-----HVFDDLYRAMVAAGEKSGHLDQVLNRLADYTEQRQHMRSQITQAMVYPIILVV 184

Query: 132 IIGSLPFCVSTLVYF 146
               +   +   V  
Sbjct: 185 FAIGIVSVLLGTVVP 199


>gi|163801322|ref|ZP_02195221.1| hypothetical protein 1103602000598_AND4_10654 [Vibrio sp. AND4]
 gi|159174811|gb|EDP59611.1| hypothetical protein AND4_10654 [Vibrio sp. AND4]
          Length = 298

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 65/143 (45%), Gaps = 4/143 (2%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE--FRRVIETQHLGLSLSESISRM 72
           +F   LD++  + ++G+ V  A+  +     +   S   + ++          S +   +
Sbjct: 155 NFTYFLDLLATATKSGMTVELALVAVSEYIGNMSSSLSNYIKIYSNDISNNGFSIAGENL 214

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            + + L EV  F+ V+    + G  +++AL  LS+ +R+   ++ + +   + AK    +
Sbjct: 215 RKSLDLPEVRDFTAVLENALESGAPVTDALRVLSKEIRNFHFIETEEKIGKVNAKMGIPL 274

Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155
           I  + F +   +   +PG +N+L
Sbjct: 275 ILFIMFPIIVEI--IAPGVLNLL 295


>gi|225420076|ref|ZP_03762379.1| hypothetical protein CLOSTASPAR_06419 [Clostridium asparagiforme
           DSM 15981]
 gi|225041332|gb|EEG51578.1| hypothetical protein CLOSTASPAR_06419 [Clostridium asparagiforme
           DSM 15981]
          Length = 397

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 57/162 (35%), Gaps = 15/162 (9%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
            D  P     +   + AG+PVS A++V    + D  +     R+ ET   G +LSE+++ 
Sbjct: 59  SDAIPPFCRQMSTMLGAGVPVSRALSVCGSSTRDRSLGRILARLNETVQKGRTLSEAMAE 118

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M               ++   +L G+L   +A ++        ++ K+++          
Sbjct: 119 M-----NGIFPGLLVHMAAMGELNGSLDRVMAKMADHYSREAKLRKKIRSAMTYPAILLV 173

Query: 132 IIGSLPFCVSTLVYFTS---------PGYMNVLINDPRGHML 164
           +  +    + T V             P +   L+       +
Sbjct: 174 VTLAATAFMLTAVLPRFASLLSGTELPAFTRFLLGTSAFLKI 215


>gi|160872410|ref|ZP_02062542.1| pilus assembly protein PilC [Rickettsiella grylli]
 gi|159121209|gb|EDP46547.1| pilus assembly protein PilC [Rickettsiella grylli]
          Length = 374

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/178 (10%), Positives = 56/178 (31%), Gaps = 12/178 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
           + +       I R ++AG+P+   + ++   + +  +    +++I     G SLSE++  
Sbjct: 34  MRELLVFTHQIARLLKAGIPLLSILQLLKSTTKNTSLTHYIQKLIVNLEEGFSLSEALE- 92

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                     + F   +    +    L      ++        +++K+    +       
Sbjct: 93  ----GNKLYFNQFYCSLIALGERTATLGLMFDRIAVYQEKNMKLRSKITNALVYPLVVLS 148

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG------VAAAFMLIGIMVMRLMI 183
           +   +   +   V      + + +         +       +       G +V  ++I
Sbjct: 149 VAILVFIALLMGVVPQFEQFFSEVGAQLPFITRIIIYLSKNIGYISFTFGFLVSMIVI 206



 Score = 40.9 bits (94), Expect = 0.079,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 48/129 (37%), Gaps = 5/129 (3%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
              +  ++ AGLP+ DA+ ++   S + V    + ++++  L        +        +
Sbjct: 245 TRALSTALAAGLPLVDALQLVADLSGNFVYK--KAILKSCLLIRDGECFYAAFS---HQK 299

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                   +    ++G  L E L N + +  ++ N  A+  ++ +E     ++   +   
Sbjct: 300 LFPSDLLALIKVGEVGHCLVEILNNTADLYEEKINYFAENLSVLLEPILIIFLGLMISCL 359

Query: 140 VSTLVYFTS 148
           +  +     
Sbjct: 360 IIAMYLPIF 368


>gi|257793108|ref|YP_003186506.1| hypothetical protein Aaci_3121 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257479800|gb|ACV60117.1| hypothetical protein Aaci_3121 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 278

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 64/180 (35%), Gaps = 5/180 (2%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++   ++ D    A+++    V AG  V + +     +   P+++ F R  +     LS+
Sbjct: 98  ERWMVRYEDGVRQAVELGTGIVEAGGTVEEWILQGEREIEGPLQAVFARGAQQVRERLSV 157

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           ++ +       P    S+    +      GG+L      ++        ++ K + +  +
Sbjct: 158 ADWLRYTADTTPSNYWSYVCNGVLSHLDSGGDLVRFFVEVA----RELQVREKYRRVMAQ 213

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            +  A  +          +Y      ++ L+  +P   +L  +A    ++     R M  
Sbjct: 214 QRKEATQLLLAMLVSPAALYLMFRRTLDNLMQAEPFTQVLFAIALVGYVVLFWFARRMAR 273


>gi|116050662|ref|YP_790518.1| putative type II secretion system protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115585883|gb|ABJ11898.1| putative type II secretion system protein [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 395

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 72/177 (40%), Gaps = 13/177 (7%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQH 60
           ++L  +R  K  ++   A+  +   + AG+ ++DAV      +    + S  + +     
Sbjct: 46  RNLGSRRRLK-AEELNMAIHELATMLAAGVSMADAVEAQERGARHPKLISALQAMANGLR 104

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S    +          ++  +   +    ++ GNL+ AL + +  +   +  +A++Q
Sbjct: 105 QGQSFPVVLESAGL-----DLPRYVYQLVAAGEMTGNLAGALRDCATQMEYERRTRAELQ 159

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
              +       ++ S    V+TL  F  P + N+L    +   L  +A A + IG+ 
Sbjct: 160 GALIYPA---ILVLSGVLAVATLFVFVVPKFANLLNETAQ---LPWLAWAVLSIGVW 210


>gi|167836788|ref|ZP_02463671.1| type II secretion system protein [Burkholderia thailandensis
           MSMB43]
          Length = 267

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66
              +D+ P  +D++      GL +  ++ V+          + SE          G +  
Sbjct: 113 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTRE 172

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+ R+      +++     ++    + GG + E L      LR+ +    + +   +  
Sbjct: 173 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 232

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           K +  +I +L   +   +    PG + V
Sbjct: 233 KMTGVMILTLLPALF--IVTAGPGMLAV 258


>gi|32477853|ref|NP_870847.1| integral membrane protein [Rhodopirellula baltica SH 1]
 gi|32448410|emb|CAD77925.1| probable integral membrane protein [Rhodopirellula baltica SH 1]
          Length = 306

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 57/158 (36%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIET 58
           ++   + R  +   D P A+D+       GL    A+            + S  R     
Sbjct: 141 VRASRRARVLQVSRDLPLAMDLWATLSEGGLGFDAALDRWQRTQRPDRVLASACRGFQRD 200

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G+  S +  R+   + +  ++ F+  +    Q+G ++SE L   +  +R     + +
Sbjct: 201 LLGGMRRSVAFRRLAGRLDVPPLTRFTAAMIQSEQMGASVSETLRLQAEDVRAE---RRE 257

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
                 ++ A+  +I  +   +  L  +    +   L+
Sbjct: 258 KSMAFAQSLATKRVIPLVVCFLPGLFVWPLGPFFTQLL 295


>gi|107102197|ref|ZP_01366115.1| hypothetical protein PaerPA_01003248 [Pseudomonas aeruginosa PACS2]
          Length = 395

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 72/177 (40%), Gaps = 13/177 (7%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQH 60
           ++L  +R  K  ++   A+  +   + AG+ ++DAV      +    + +  + +     
Sbjct: 46  RNLGSRRRLK-AEELNMAIHELATMLAAGVSMADAVEAQERGARHPKLITALQAMANGLR 104

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S    +          ++  +   +    ++ GNL+ AL + +  +   +  +A++Q
Sbjct: 105 QGQSFPVVLESAGL-----DLPRYVYQLVAAGEMTGNLAGALRDCATQMEYERRTRAELQ 159

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
              +       ++ S    V+TL  F  P + N+L    +   L  +A A + IG+ 
Sbjct: 160 GALIYPA---ILVLSGVLAVATLFVFVVPKFANLLNETAQ---LPWLAWAVLSIGVW 210


>gi|76789307|ref|YP_328393.1| general secretion pathway protein F [Chlamydia trachomatis
           A/HAR-13]
 gi|237804921|ref|YP_002889075.1| general secretion pathway protein F [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255311389|ref|ZP_05353959.1| general secretion pathway protein F [Chlamydia trachomatis 6276]
 gi|255317690|ref|ZP_05358936.1| general secretion pathway protein F [Chlamydia trachomatis 6276s]
 gi|255348951|ref|ZP_05380958.1| general secretion pathway protein F [Chlamydia trachomatis 70]
 gi|255503490|ref|ZP_05381880.1| general secretion pathway protein F [Chlamydia trachomatis 70s]
 gi|76167837|gb|AAX50845.1| general secretion pathway protein F [Chlamydia trachomatis
           A/HAR-13]
 gi|231273221|emb|CAX10134.1| general secretion pathway protein F [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|296437032|gb|ADH19202.1| general secretion pathway protein F [Chlamydia trachomatis G/11222]
          Length = 391

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/193 (12%), Positives = 59/193 (30%), Gaps = 15/193 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           ++ + ++       +       +V  +R+G+ + DA+  +  Q     +      ++E  
Sbjct: 42  IRKVRERNYRVTTTELVIFTKQLVLLLRSGISLYDALTSLRDQYQGRALAGVLTSLMEAL 101

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G   SE+++R            F        +  GNL  AL N+ ++L +++ +   +
Sbjct: 102 RSGGVFSEALARFP-----HIFDSFYQNSVRSGESIGNLEGALMNIIKVLEEKEKLSKSL 156

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG---------VAAA 170
            A             ++       V  T       +        +               
Sbjct: 157 AAALSYPAILLVFSCAVVVFFLIGVIPTLKETFEDMEMTRLTKAVFSCSTWFCRYKFLVL 216

Query: 171 FMLIGIMVMRLMI 183
              IG  +   ++
Sbjct: 217 LGGIGGAISLRIV 229


>gi|296112335|ref|YP_003626273.1| type IV pilus assembly protein PilC [Moraxella catarrhalis RH4]
 gi|295920029|gb|ADG60380.1| type IV pilus assembly protein PilC [Moraxella catarrhalis RH4]
 gi|326569232|gb|EGE19293.1| type IV pilus assembly protein PilC [Moraxella catarrhalis BC7]
          Length = 419

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/174 (9%), Positives = 58/174 (33%), Gaps = 7/174 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71
                 +L  +   + +G+ ++DA+ +     ++  + ++  ++ +    G + +++I+ 
Sbjct: 80  NKQILLSLRTLATLLTSGVVLTDALDIAAKTTTNGRLSNKLIQIKQCIEQGENFTQAIAS 139

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              +         +  +    +  G L   L   +     +   ++++        A A 
Sbjct: 140 HPEFG------SLALALIDAGEKSGTLDIMLERAAEHAEQQALRQSQLNQALRYPAAIAL 193

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
               +   +   V  +       + N+     L  ++ +  L       L++  
Sbjct: 194 TSLIVSTVMLLKVVPSFAASFGNMGNELPTITLWVLSLSQWLSANFWQLLLVAI 247


>gi|148262760|ref|YP_001229466.1| general secretion pathway protein F [Geobacter uraniireducens Rf4]
 gi|146396260|gb|ABQ24893.1| general secretion pathway protein F [Geobacter uraniireducens Rf4]
          Length = 403

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/174 (11%), Positives = 57/174 (32%), Gaps = 6/174 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +       +   + + +PV +++  +  Q     +R    RV +    G SL+++++   
Sbjct: 65  ELSLMTRRLATLLGSSVPVYESINTLYDQERPGELRKMLGRVRDRLAEGTSLAKALAAEP 124

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           +       S     +    +  G L   L  L+  L D+  +++KV            + 
Sbjct: 125 QI-----FSDSYIGMVSAGEASGALEVVLERLAEFLEDQAAIRSKVITSLAYPILMVVVG 179

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
             +   +   V                   ++ +  + ++       +++ F +
Sbjct: 180 VVVMLFLLAFVVPKIVTVFEESKATLPLITIILIKVSNLVRKGWWALIILGFAI 233


>gi|326561846|gb|EGE12181.1| type IV pilus assembly protein PilC [Moraxella catarrhalis 7169]
 gi|326563279|gb|EGE13546.1| type IV pilus assembly protein PilC [Moraxella catarrhalis 46P47B1]
 gi|326563392|gb|EGE13657.1| type IV pilus assembly protein PilC [Moraxella catarrhalis 12P80B1]
 gi|326568930|gb|EGE18999.1| type IV pilus assembly protein PilC [Moraxella catarrhalis BC1]
 gi|326571904|gb|EGE21909.1| type IV pilus assembly protein PilC [Moraxella catarrhalis BC8]
 gi|326577966|gb|EGE27830.1| type IV pilus assembly protein PilC [Moraxella catarrhalis O35E]
          Length = 419

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/174 (9%), Positives = 58/174 (33%), Gaps = 7/174 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71
                 +L  +   + +G+ ++DA+ +     ++  + ++  ++ +    G + +++I+ 
Sbjct: 80  NKQILLSLRTLATLLTSGVVLTDALDIAAKTTTNGRLSNKLIQIKQCIEQGENFTQAIAS 139

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              +         +  +    +  G L   L   +     +   ++++        A A 
Sbjct: 140 HPEFG------SLALALIDAGEKSGTLDIMLERAAEHAEQQALRQSQLNQALRYPAAIAL 193

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
               +   +   V  +       + N+     L  ++ +  L       L++  
Sbjct: 194 TSLIVSTVMLLKVVPSFAASFGNMGNELPTITLWVLSLSQWLSANFWQLLLVAI 247


>gi|225874660|ref|YP_002756119.1| putative type 4 fimbrial assembly protein PilC [Acidobacterium
           capsulatum ATCC 51196]
 gi|225793983|gb|ACO34073.1| putative type 4 fimbrial assembly protein PilC [Acidobacterium
           capsulatum ATCC 51196]
          Length = 398

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 7/151 (4%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMPLQ 79
              V  ++AGLP+  +V ++     +P  +   + V      G S+S +      + P  
Sbjct: 64  QQFVTLIKAGLPILSSVEMLAQSQKNPHFAAQLQNVAARVRTGESISSAFDAQGGFPP-- 121

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                 T   +  +  GNL E L       R     + K+QA  +       ++  L   
Sbjct: 122 ----IYTTTLLAGERSGNLEEVLTRYLAFQRISLTFRKKLQASLIYPSMLIVLVFGLFIF 177

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           + + V        + + +   G  L  +A  
Sbjct: 178 LISFVVPRFAMLYDQMGSKLPGITLALLAFG 208


>gi|153812902|ref|ZP_01965570.1| hypothetical protein RUMOBE_03309 [Ruminococcus obeum ATCC 29174]
 gi|149830980|gb|EDM86070.1| hypothetical protein RUMOBE_03309 [Ruminococcus obeum ATCC 29174]
          Length = 289

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 54/151 (35%), Gaps = 1/151 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  +  R  + L D P  L  +   V +G+ + DA           +  E +       
Sbjct: 137 LQDKLTARRQEILMDLPQVLSKLTLLVNSGMVLRDAWKRTAITGERALYKEMQNTSLEID 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKV 119
            G+  +++         ++EV  F+++I     +    L+  L ++S  + + K  + K 
Sbjct: 197 NGIMEADAYRNFADRCSVKEVRKFTSLILQNLQKGNEELALFLGDMSTEMWEMKKNEVKQ 256

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150
           +     ++    +       +  ++     G
Sbjct: 257 KGEKANSRLLLPVFLIFIGILILILVPVMSG 287


>gi|58220036|gb|AAW67546.1| outer membrane secretion protein S [Pseudomonas alcaligenes]
          Length = 404

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/189 (12%), Positives = 45/189 (23%), Gaps = 16/189 (8%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R      D       +   + A LP+ +A+     QS  P        +        L  
Sbjct: 59  RRGLSARDLALVTRQLATLISAALPIEEALRAAAAQSRQPRLQSMLLAVR----AKVLEG 114

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
                                    +  G+L   L  L+     R+  + K+Q   +   
Sbjct: 115 HSLAKALATYPAAFPELYRATVAAGEHAGHLGPVLEQLADYTEQRQQSRQKIQMALLYPV 174

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR----GHMLL--------GVAAAFMLIG 175
                   +   +   V                    G + L         +A    ++G
Sbjct: 175 ILMLASLGIVGFLLGYVVPDVVRVFVDSGQTLPALTRGLIFLSELVKAWGALAIVLAVLG 234

Query: 176 IMVMRLMIN 184
           ++  R  + 
Sbjct: 235 VIGFRRALR 243



 Score = 37.8 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 45/130 (34%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77
               +   VR+G+P+ +A+A+     S+ +         +    G SLS ++    ++ P
Sbjct: 273 FASTLAILVRSGVPLVEALAIGAEVVSNLIIRSDVANATQRVREGGSLSRALEASRQFPP 332

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         +    +  G L + L+  +R   +       +     E     ++   + 
Sbjct: 333 M------MLHMIASGERSGELDQMLSRTARNQENDLAATIGLLVGLFEPFMLVFMGAVVL 386

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 387 VIVLAILLPI 396


>gi|15835473|ref|NP_297232.1| general secretion pathway protein F [Chlamydia muridarum Nigg]
 gi|270285653|ref|ZP_06195047.1| general secretion pathway protein F [Chlamydia muridarum Nigg]
 gi|270289662|ref|ZP_06195964.1| general secretion pathway protein F [Chlamydia muridarum Weiss]
 gi|301337049|ref|ZP_07225251.1| general secretion pathway protein F [Chlamydia muridarum MopnTet14]
 gi|7190885|gb|AAF39655.1| general secretion pathway protein F [Chlamydia muridarum Nigg]
          Length = 391

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/166 (11%), Positives = 56/166 (33%), Gaps = 6/166 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           ++ + ++       +       +   +R+G+ + D++A +  Q     +      ++E  
Sbjct: 42  IRKVRERNYRVPTSELVIFTKQLSLLLRSGVSLYDSLASLRDQYQGRALAGILTSLMEAL 101

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G   SE++++            F        +  GNL  AL N++++L +++ +   +
Sbjct: 102 RSGGVFSEALAKYP-----TIFDSFYQNSVRSGESVGNLEGALVNITKVLEEKEKLSKNI 156

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165
            A             ++       V  +       +       ++ 
Sbjct: 157 SAALSYPAILLVFSCAVIVFFLVGVIPSLKESFEDIETTGLTKIVF 202


>gi|293192038|ref|ZP_06609362.1| putative bacterial type II secretion system protein F domain
           protein [Actinomyces odontolyticus F0309]
 gi|292820386|gb|EFF79375.1| putative bacterial type II secretion system protein F domain
           protein [Actinomyces odontolyticus F0309]
          Length = 425

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 51/181 (28%), Gaps = 14/181 (7%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVI-----------VGQSSDPVRSEFRRVIETQHLG 62
            +    +  +   +RAG P S A  +            V  S   V  E+ R        
Sbjct: 102 RELSLLVAEVATRLRAGAPTSLAWGLALARIDAGGSVGVDDSYPAVLDEWARAPTRWRSL 161

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
                +       +     +  +        LG  L++ L  +   + D + ++   +  
Sbjct: 162 RRAERAPGVAASRV---SAASVALACRFSHDLGAPLADVLDAIGSAIDDAQALEEARRVA 218

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           +     SA ++ +LP                  +    G M   V       G+   R +
Sbjct: 219 AAGPLMSARVLAALPLVGIACALALGASPWQFYMGGTVGRMCAFVGGVAWAAGVASCRRI 278

Query: 183 I 183
           +
Sbjct: 279 L 279



 Score = 36.6 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 41/143 (28%), Gaps = 10/143 (6%)

Query: 3   HLIKKRTAKFLDDF--PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
             I  R  +  +      A D++  ++  G  +  A+  +   S             +  
Sbjct: 276 RRILARCRRVEEGIDGALACDLVASALACGAAIPRALDALADAS---TTEALTWAAASLR 332

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG + +++      +            +      G      LA  +   R  + + AK Q
Sbjct: 333 LGATWADAWEDTPEWSHPLRD-----ALEASWTSGTAPETLLARSAAWERRSRLVDAKAQ 387

Query: 121 ALSMEAKASAWIIGSLPFCVSTL 143
           A  +  +    +         +L
Sbjct: 388 AEELSVRLVGPLGVFFLPAFLSL 410


>gi|237802999|ref|YP_002888193.1| general secretion pathway protein F [Chlamydia trachomatis
           B/Jali20/OT]
 gi|231274233|emb|CAX11027.1| general secretion pathway protein F [Chlamydia trachomatis
           B/Jali20/OT]
          Length = 391

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/193 (12%), Positives = 59/193 (30%), Gaps = 15/193 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           ++ + ++       +       +V  +R+G+ + DA+  +  Q     +      ++E  
Sbjct: 42  IRKVRERNYRVTTTELVIFTKQLVLLLRSGISLYDALTSLRDQYQGRALAGVLTSLMEAL 101

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G   SE+++R            F        +  GNL  AL N+ ++L +++ +   +
Sbjct: 102 RSGGVFSEALARFP-----HIFDSFYQNSVRSGESIGNLEGALMNIIKVLEEKEKLSKSL 156

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG---------VAAA 170
            A             ++       V  T       +        +               
Sbjct: 157 AAALSYPAILLVFSCAVVVFFLIGVIPTLKETFEDMEMTRLTKAVFSCSTWFCRYKFLVL 216

Query: 171 FMLIGIMVMRLMI 183
              IG  +   ++
Sbjct: 217 LGGIGGAISLRIV 229


>gi|149191273|ref|ZP_01869528.1| type IV pilin biogenesis protein PilC [Vibrio shilonii AK1]
 gi|148834871|gb|EDL51853.1| type IV pilin biogenesis protein PilC [Vibrio shilonii AK1]
          Length = 408

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/149 (11%), Positives = 49/149 (32%), Gaps = 6/149 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   +   +P+  A+ +I    S   ++S   +V      G+ +++++  
Sbjct: 67  RKDITLFTRQLATLLTTRVPLVQALKLISESHSKAEMKSVLNQVASRVESGVPIAQALQA 126

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +  +        F   +    +  GN++  L  L+        +++KV    +       
Sbjct: 127 LSTH-----FDRFYIDMIATGESSGNIAVTLDRLATYREKHDALQSKVVKAMIYPSMVLI 181

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
           +  ++ + + T V             +  
Sbjct: 182 VSCAVTYLMLTSVIPEFESMFKGFNANLP 210


>gi|146343149|ref|YP_001208197.1| general secretion pathway protein F [Bradyrhizobium sp. ORS278]
 gi|146195955|emb|CAL79982.1| General secretion pathway protein F [Bradyrhizobium sp. ORS278]
          Length = 402

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 55/183 (30%), Gaps = 28/183 (15%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   ++AG  + DA+ ++   S    +R    R+      G S +++ +       
Sbjct: 68  FTRDLALLLKAGARLDDALDLLSNDSDIGRLRPVVARLRAAIMSGESFADAAAAQPLL-- 125

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               S     +    +  G L + L  L+      +  + K+           ++  +  
Sbjct: 126 ---FSPMYVALMRVGEASGTLDQVLTALAGERERSEATRRKLTDAMQYPA---FVFLAAI 179

Query: 138 FCVSTLVYFTSPGYMNVL------INDPRGHML-------------LGVAAAFMLIGIMV 178
             +   +    P +  VL       +   G  +                 AA ++ G  +
Sbjct: 180 GVMLFFLVAVLPNFSAVLRDFGGRADTALGFFMSLSDILRDNAAVITLGCAALLVAGWWL 239

Query: 179 MRL 181
           +R 
Sbjct: 240 LRQ 242


>gi|240145311|ref|ZP_04743912.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
 gi|257202606|gb|EEV00891.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
          Length = 309

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 64/185 (34%), Gaps = 2/185 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++            +   AL II  +      +  +V   +   + PV++ F   +    
Sbjct: 120 IRLTASHFKKDVSSELETALSIITTAYLRSEDILTSVEENLEYLNPPVKTVFADFVSRIR 179

Query: 61  L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           L    L  ++  +   +       +   +        +L   L  +   L D + + A++
Sbjct: 180 LIDPDLEAALEELKGKIENDVFMEWVDALKSCL-YDRSLKTTLTPIVAKLSDMRIVNAEL 238

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           + L  E +     +  L      L+YF +  + + L++   G ++L V  A + +    +
Sbjct: 239 EYLVFEPRKEFITMVVLAVGNIPLLYFLNQSWYDTLMHTIPGQIMLAVTGAIIFVSTACV 298

Query: 180 RLMIN 184
             +  
Sbjct: 299 IKLTK 303


>gi|258515847|ref|YP_003192069.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
           771]
 gi|257779552|gb|ACV63446.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 414

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 58/153 (37%), Gaps = 6/153 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            L  +   + AG+ +  ++ V+  QS +  ++     V      G +LS+++ +     P
Sbjct: 79  LLWQLAALITAGVSIVASLVVLEQQSRNRRLKFILSSVRRDVEAGKALSDAMIQFPGTFP 138

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +       T I    +  G L  A+  +++   +R  +  KV + S+       +   + 
Sbjct: 139 I-----MVTSILKTGETTGLLDTAMERVAKYWEERLELMRKVISSSLYPAIVLLVSLGVI 193

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             + + V      ++  +  +   +  L +  A
Sbjct: 194 IFMVSYVLPKLAPFLESMGGEMPWNTRLLIDIA 226



 Score = 37.8 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 48/134 (35%), Gaps = 6/134 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   V +G+ V +A+       S+  V+    R+++    G +LS+ + R   Y P
Sbjct: 282 FAKTLALLVSSGVSVLEALKATRETISNTAVKKVIERMVDRVLRGENLSDPLLRAGNYFP 341

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G++  +L  ++ I       K       ME      + G + 
Sbjct: 342 P-----MVGNMVKVGEETGSVDSSLLMVADIYGKLLQAKIDKMISLMEPILIVVLGGIVG 396

Query: 138 FCVSTLVYFTSPGY 151
           F  + LV     GY
Sbjct: 397 FIAAALVGAMVAGY 410


>gi|218782645|ref|YP_002433963.1| type II secretion system protein [Desulfatibacillum alkenivorans
           AK-01]
 gi|218764029|gb|ACL06495.1| Type II secretion system protein, PilC [Desulfatibacillum
           alkenivorans AK-01]
          Length = 406

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 44/141 (31%), Gaps = 6/141 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D           +RAG+P+ D   V      +  ++     + +    G SL +++ + 
Sbjct: 66  RDIILFTKQFATMLRAGIPIIDLFKVAESQTENPKLKKVIAVISKDIQEGASLHQAMKKH 125

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    S     +    +  G L + L  L  I+   + +K  ++   +       +
Sbjct: 126 P-----SVFSPLYLSMMRAGETSGALPQVLERLIYIIDHEEKVKKDIRGAMIYPALVTIV 180

Query: 133 IGSLPFCVSTLVYFTSPGYMN 153
           +    F +   V        +
Sbjct: 181 LTGAFFLLEIKVVPVFAKMFS 201


>gi|325695694|gb|EGD37593.1| bacterial type II secretion system protein F [Streptococcus
           sanguinis SK150]
          Length = 408

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/171 (11%), Positives = 51/171 (29%), Gaps = 4/171 (2%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
               L D       +   + +G+P+++AV ++  Q++        +++       S    
Sbjct: 57  KKIKLKDISLFCKQMSVMLESGIPLNNAVDILEQQATSKNLKSSLKIVSKSLKEGS---- 112

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                              +    +  G L E L  +S           +++   +    
Sbjct: 113 QLSKAMLDQEGMFPDLLIRMVQAGEKTGKLDEVLEKMSEHYNKELKTSRQIRGAMIYPAV 172

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            A++  +    +  +V  +  G       D      + +AA+  +     +
Sbjct: 173 LAFLAVAAVLALLYIVIPSFSGIFEQSGMDMPLPTRIVLAASNFVRSYWYI 223



 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+ +A+      +++ V  E  ++         L +           
Sbjct: 270 FASTLAILTSAGIPLVEAIESAAATTNNAVVIEKMKIANE-----GLQKGERLTGMITAT 324

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G+L   L   S    +      K     +E      +   +  
Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLIKTSDYYEEELETAIKQLLSLLEPAMIIVMGVIIGG 384

Query: 139 CVSTLVYFTS 148
            V++++    
Sbjct: 385 IVASVMLPMF 394


>gi|327538076|gb|EGF24766.1| type II secretion system protein [Rhodopirellula baltica WH47]
          Length = 306

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 57/158 (36%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIET 58
           ++   + R  +   D P A+D+       GL    A+            + S  R     
Sbjct: 141 VRASRRARVLQVSRDLPLAMDLWATLSEGGLGFDAALDRWQRTQRPDRVLASACRGFQRD 200

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G+  S +  R+   + +  ++ F+  +    Q+G ++SE L   +  +R     + +
Sbjct: 201 LLGGMRRSVAFRRLAGRLDVPPLTRFTAAMIQSEQMGASVSETLRLQAEDVRAE---RRE 257

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
                 ++ A+  +I  +   +  L  +    +   L+
Sbjct: 258 KSMAFAQSLATKRVIPLVVCFLPGLFVWPLGPFFTQLL 295


>gi|307297359|ref|ZP_07577165.1| Type II secretion system F domain protein [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916619|gb|EFN47001.1| Type II secretion system F domain protein [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 400

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 51/156 (32%), Gaps = 8/156 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQHLGLSLSESIS 70
             +       +   V +G+ + D++ V+  Q   S   R    RV+     G+S SES+ 
Sbjct: 61  QKEVSIFSRQLATMVSSGVRIRDSLQVLSTQVLFSRRFRKIISRVVLDIEGGMSFSESLE 120

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +   + P        T +    + GG L E+L  ++        ++ +V++         
Sbjct: 121 KTGVFEP------LFTNLVKAGEAGGVLDESLERVADFYEGMVELQNQVKSAMAYPLFMM 174

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
                +   +S  +                   +L 
Sbjct: 175 VFAVGIVGMISFFILPNLISAFGGNYEPEGTMAILL 210


>gi|158314421|ref|YP_001506929.1| integral membrane protein [Frankia sp. EAN1pec]
 gi|158109826|gb|ABW12023.1| integral membrane protein [Frankia sp. EAN1pec]
          Length = 302

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/181 (10%), Positives = 55/181 (30%), Gaps = 2/181 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             + R            + +  ++ A   +  A+      +   +R E   +    +   
Sbjct: 91  RAQARHVARTQGIAVWAEQLRDTLAAAAGLEQAILATAATAPAAIRGEIALLAARINRRE 150

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            LS ++  +   +           + +        LS  L  L+   R   +M  +++  
Sbjct: 151 RLSPALRGLADDLDDPLADLVIGALILAAEHQARQLSGLLGQLAATARAHVDMLGRIEVG 210

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
               + +  ++       +  +   +  ++    +   G ++L    A    G + +R M
Sbjct: 211 RARMRTTMRVVVVTSIVFAGGLVIFNRPFLAP-YSTAAGQLVLLAIGAIFAGGFVWLRRM 269

Query: 183 I 183
            
Sbjct: 270 A 270


>gi|120602837|ref|YP_967237.1| type II secretion system protein [Desulfovibrio vulgaris DP4]
 gi|120563066|gb|ABM28810.1| type II secretion system protein [Desulfovibrio vulgaris DP4]
          Length = 408

 Score = 51.7 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 49/159 (30%), Gaps = 7/159 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            +            +AG+P++  + V+  Q+           I  +     +  +     
Sbjct: 67  KELILFTKQFRTLFQAGIPITQLLQVLQNQTEHKRLKA----IAAEMSQAIMGGATLYDA 122

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +  S     +    +  G L E +  L  +L     +++ +++     K    ++
Sbjct: 123 FRAHPKVFSELYCSMMRAGEASGALGEVMNRLVYLLEHEHKIRSDIKSALRYPK---MVV 179

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
           G+L      L+    P + ++         L    A  M
Sbjct: 180 GALAVAFFVLLNLVIPKFADIFARAKIELPLPTRIAIGM 218


>gi|221208145|ref|ZP_03581150.1| type IV fimbrial assembly protein PilC [Burkholderia multivorans
           CGD2]
 gi|221172048|gb|EEE04490.1| type IV fimbrial assembly protein PilC [Burkholderia multivorans
           CGD2]
          Length = 403

 Score = 51.7 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/145 (9%), Positives = 39/145 (26%), Gaps = 6/145 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   ++AGLPV+ A+ ++   ++   +      +      G   + +++  
Sbjct: 64  RDVTRFTRQLASLLQAGLPVAPALDMLSRTRTHGGLPRIAAGLAREIVDGQRFAAALALY 123

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L  ++           K++            
Sbjct: 124 PSQFG-----TLYRQLIEVGEASGALGTVLMRIAEHRERADAQWRKLRTALAYPAVVILF 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIN 157
             ++   +   V  T     +    
Sbjct: 179 ALAIAAALMVWVVPTFRQIFDGFGT 203



 Score = 35.9 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 41/130 (31%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+P++DA A +   +          ++      G  L++++     +  
Sbjct: 273 WCRSLATLLGAGVPLADAFATLERTAGHPVFERASTQIAARVLRGARLADAMQASGCFPD 332

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                         ++  G L   LA+++ +   + + +    A   E      +   + 
Sbjct: 333 DIVQP------IAVAEETGALDTMLADIATLSEHQLDARIDTLAALGEPLIVIVLGALVG 386

Query: 138 FCVSTLVYFT 147
             V  +    
Sbjct: 387 GLVIAMYLPI 396


>gi|310765062|gb|ADP10012.1| General secretion pathway protein F (Pectic enzymes secretion
           protein OutF) [Erwinia sp. Ejp617]
          Length = 401

 Score = 51.7 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 50/179 (27%), Gaps = 20/179 (11%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   V A LP+  A+  +  Q++ P        I  +     L  +       +  
Sbjct: 67  MTRQLATLVGAALPLEQALLALERQTTKPAGRTMLHAIRQKV----LEGASLADAVGLYP 122

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G L   L  L+      + +K+K+    +       +  S+  
Sbjct: 123 ATFPPLYQAMIAAGEASGKLDNVLEQLADYSEKTQQIKSKLTQAMIYPLLLTLVAISVIT 182

Query: 139 CVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVMRL 181
            + T V  +       +                I    G  +L V      I  +++R 
Sbjct: 183 ILLTAVVPSVVEQFVHMKQALPLSTRLLMSISEITRAIGLPVLLVILLAGFIARVMLRR 241


>gi|282853288|ref|ZP_06262625.1| type II secretion system F domain protein [Propionibacterium acnes
           J139]
 gi|282582741|gb|EFB88121.1| type II secretion system F domain protein [Propionibacterium acnes
           J139]
          Length = 249

 Score = 51.7 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 56/148 (37%), Gaps = 5/148 (3%)

Query: 7   KRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +R  +      P AL ++  ++ AGLP+  AV  +      P   + RR+  +   G+  
Sbjct: 101 RRMEQHRAAQLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVPD 160

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S + + +     ++     +  +S     G  +SE L+  +  L+     KA+ +A    
Sbjct: 161 SRAWNDLA---SVEVWRDPAQDVSRAVNSGEGISELLSAHAAQLQVAAAEKAEKKARKAG 217

Query: 126 AK-ASAWIIGSLPFCVSTLVYFTSPGYM 152
                  +   LP  +   V     G +
Sbjct: 218 VDAIGPLVCCHLPAFLLVGVVPIIAGMV 245


>gi|258510584|ref|YP_003184018.1| hypothetical protein Aaci_0581 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477310|gb|ACV57629.1| hypothetical protein Aaci_0581 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 278

 Score = 51.7 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 64/180 (35%), Gaps = 5/180 (2%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++   ++ D    A+++    V AG  V + +     +   P+++ F R  +     LS+
Sbjct: 98  ERWMVRYEDGVRQAVELGTGIVEAGGTVEEWILQGEREIEGPLQAVFARGAQQVRERLSV 157

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           ++ +       P    S+    +      GG+L      ++        ++ K + +  +
Sbjct: 158 ADWLRYTADTTPSNYWSYVCNGVLSHLDSGGDLVRFFVEVA----RELQVREKYRRVMAQ 213

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            +  A  +          +Y      ++ L+  +P   +L  VA    ++     R M  
Sbjct: 214 QRKEATQLLLAMLVSPAALYLMFRRTLDNLMQAEPFTQVLFAVALVGYVVLFWFARRMAR 273


>gi|225022081|ref|ZP_03711273.1| hypothetical protein CORMATOL_02114 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945202|gb|EEG26411.1| hypothetical protein CORMATOL_02114 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 290

 Score = 51.7 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 58/168 (34%), Gaps = 5/168 (2%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
              L +IV  ++AG  +  A+   +   +   +R E          G S        +  
Sbjct: 99  ATMLTLIVGELQAGATMGAALTACLPTLTEPELRREITVAARRCATGGS----AGAELEQ 154

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P+  +S       +    G  L+  L N+   +  +   +++ +A    A A+A ++  
Sbjct: 155 SPILALSLMGHAWRIAETNGMALAGVLDNIRHRIDHQNRHESRTKAALQGANATAIVLAL 214

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           LP     + +         L     G ++L    +    GI+    +I
Sbjct: 215 LPLLGMVMGHAIGVNVPAFLTGGGVGGLILIAGVSAECAGILWSDHII 262


>gi|189349295|ref|YP_001944923.1| type IV pilus assembly protein [Burkholderia multivorans ATCC
           17616]
 gi|189333317|dbj|BAG42387.1| type IV pilus assembly protein [Burkholderia multivorans ATCC
           17616]
          Length = 403

 Score = 51.7 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/145 (9%), Positives = 40/145 (27%), Gaps = 6/145 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   ++AGLP++ A+ ++   ++   +      +      G   + +++  
Sbjct: 64  RDVTRFTRQLASLLQAGLPLAPALDMLSRTRTHGGLPRIAAGLAREIVDGQRFAAALALY 123

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L  ++           K++A           
Sbjct: 124 PSQFG-----TLYRQLIEVGEASGALGTVLMRIAEHRERADAQWRKLRAALAYPAVVILF 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIN 157
             ++   +   V  T     +    
Sbjct: 179 ALAIAAALMVWVVPTFRQIFDGFGT 203



 Score = 35.1 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 42/130 (32%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+P++DA A +   +   V      ++      G  L++++     +  
Sbjct: 273 WCRSLATLLGAGVPLADAFATLERTAGHHVFERASTQIAARVLRGARLADAMQASGCFPD 332

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                         ++  G L   LA+++ +   + + +    A   E      +   + 
Sbjct: 333 DIVQP------IAVAEETGALDTMLADIATLSEHQLDARIDTLAALGEPLIVIVLGALVG 386

Query: 138 FCVSTLVYFT 147
             V  +    
Sbjct: 387 GLVIAMYLPI 396


>gi|89895157|ref|YP_518644.1| hypothetical protein DSY2411 [Desulfitobacterium hafniense Y51]
 gi|89334605|dbj|BAE84200.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 401

 Score = 51.7 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 47/157 (29%), Gaps = 7/157 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +        +   VR+G  +   + V+  Q  D    +   +I                 
Sbjct: 62  ESISAFCSQLAMMVRSGANLVRGLEVLKLQLDDKQLQKVLEIIIQGVSRGD----SLSQA 117

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                  +      +    +  GNL   L +++        ++ K+Q+ S+       ++
Sbjct: 118 MRDCKGALPDLLINLVAVGEESGNLESVLTSMAEYYDRENFIRKKIQSASVYPA---ILL 174

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             L   +   + F  P  M +L  + +   L+     
Sbjct: 175 MVLIGIIVFFMNFLLPEIMGMLTENGQTLPLITQMII 211


>gi|288572882|ref|ZP_06391239.1| type II secretion system protein [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288568623|gb|EFC90180.1| type II secretion system protein [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 383

 Score = 51.7 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 56/160 (35%), Gaps = 8/160 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   ++AGLP+S+A+ ++  Q    +   +  + +    G  LS S+         
Sbjct: 65  FCRSLSTYLKAGLPLSEALKLLEKQGGKRLGLLYGSLRQAVEGGRRLSSSLRDAG----- 119

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    + GG L E L     +   + +++ ++Q           +   +  
Sbjct: 120 -CFDENLCSMVESGERGGTLDEVLTQAVGLFSMQASLRRRLQTAMTYPAIMMVVGLGVVA 178

Query: 139 CVSTLVYFTSPGYMNVLINDP--RGHMLLGVAAAFMLIGI 176
            + T V        + +         +L+G++ AF  +G 
Sbjct: 179 FLMTYVVPKVAVLFSDMGRALPIPTRILMGLSRAFQAMGF 218



 Score = 34.7 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 8/130 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   +R+G+P+  A+ +      DP +  +  + +    GL   +++ +       
Sbjct: 255 VCSNLGSLLRSGIPLVQALRMSA--VLDPRKDRWMAIADQVKGGLRFEKALEK------D 306

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                         ++GG+L+ AL  +++   DR        A  +E     ++   + F
Sbjct: 307 GTFDEDLVYFVRIGEIGGDLAGALEQIAQTRWDRARASMDRMANLIEPVMVLFLGLVVGF 366

Query: 139 CVSTLVYFTS 148
            V  ++    
Sbjct: 367 VVVAILLPIF 376


>gi|3978480|gb|AAC83357.1| outer membrane secretion protein S [Pseudomonas alcaligenes]
          Length = 404

 Score = 51.7 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/189 (12%), Positives = 46/189 (24%), Gaps = 16/189 (8%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R      D       +   + A LP+ +A+     QS  P        +        L  
Sbjct: 59  RRGLSARDLALVTRQLATLIGAALPIEEALRAAAAQSRQPRIQSMLLAVR----AKVLEG 114

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
                                    +  G+L+  L  L+     R+  + K+Q   +   
Sbjct: 115 HSLAKALASYPAAFPELYRATVAAGEHAGHLAPVLEQLADYTEQRQQSRQKIQMALLYPV 174

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR----GHMLL--------GVAAAFMLIG 175
                   +   +   V                    G + L         +A    ++G
Sbjct: 175 ILMLASLGIVGFLLGYVVPDVVRVFVDSGQTLPALTRGLIFLSELVKSWGALAIVLAVLG 234

Query: 176 IMVMRLMIN 184
           ++  R  + 
Sbjct: 235 VLAFRRALR 243



 Score = 37.0 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 45/130 (34%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77
               +   VR+G+P+ +A+A+     S+ +         +    G SLS ++    ++ P
Sbjct: 273 FASTLAILVRSGVPLVEALAIGAEVVSNLIIRSDVANATQRVREGGSLSRALEASRQFPP 332

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         +    +  G L + LA  +R   +       +     E     ++   + 
Sbjct: 333 M------MLHMIASGERSGELDQMLARTARNQENDLAATIGLLVGLFEPFMLVFMGAVVL 386

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 387 VIVLAILLPI 396


>gi|322384399|ref|ZP_08058085.1| hypothetical protein PL1_0931 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150757|gb|EFX44217.1| hypothetical protein PL1_0931 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 223

 Score = 51.7 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 71/159 (44%), Gaps = 8/159 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI----VGQSSDPVRSEFRRVI 56
           +   +KK+    L + P  L+ I+  V AG  V  +          +   P+++E  +  
Sbjct: 67  LDQKLKKKKHSILIELPEFLNKIILLVDAGETVQASFIRCIDDRAEKPLSPLQAELIKCK 126

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTV-ISVQSQLGGNLSEALANLSRILRDRKNM 115
               + +SL++S+  + R   +QE+S F+T  +    + G +L+ AL NLS+ L +R+  
Sbjct: 127 RELLMNVSLNKSLGELTRRCSMQEISMFTTTVLLNYKRGGHDLTVALRNLSKDLWERRKA 186

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
            +++      +K    +       +  +V   +P  M +
Sbjct: 187 VSRILGEEASSKL---VFPMALIFLIVIVIVAAPAMMMM 222


>gi|149177768|ref|ZP_01856368.1| General secretion pathway protein F [Planctomyces maris DSM 8797]
 gi|148843418|gb|EDL57781.1| General secretion pathway protein F [Planctomyces maris DSM 8797]
          Length = 362

 Score = 51.7 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 52/171 (30%), Gaps = 18/171 (10%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           I+  V+AG+P+   +  +  +  D +      +      G +L E+++      P     
Sbjct: 29  IISLVQAGIPLELGLREMGNELPDRLGRITADLATRMERGSTLPEAMAAEGACFP----- 83

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
               VI       G L+ AL  +S    +  +++ ++    +       +   L      
Sbjct: 84  RVYRVIVEAGIKSGKLTVALEEMSNYAWELFHLRRQIGMAMVYPLIVFSLAYGLFMIFLF 143

Query: 143 LVYFTSPGYMNVL-------------INDPRGHMLLGVAAAFMLIGIMVMR 180
            V        ++              +     +  +       L  I+ MR
Sbjct: 144 EVLSRFNAAYDIFRLSESKPLQLLNSMQSTVVYWGMVPPLVLFLFAILWMR 194


>gi|256810062|ref|YP_003127431.1| Type II secretion system F domain protein [Methanocaldococcus
           fervens AG86]
 gi|256793262|gb|ACV23931.1| Type II secretion system F domain protein [Methanocaldococcus
           fervens AG86]
          Length = 576

 Score = 51.7 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 67/183 (36%), Gaps = 9/183 (4%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
            +    +P  L+ +  +VR+G+ +  A+ V    +  P+    +++      G  ++E  
Sbjct: 371 NQKEKYYPIFLNDLTMAVRSGMDIIRAMQVCARTNYGPLTKIVKKMAVQMSWGRPINEVF 430

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
           + + +          ++++   +  GG++ + L +++        MK ++ +        
Sbjct: 431 ADLEKTEKSLIAKRIASILKECAVSGGDIKDILTSVTVHAYRLSEMKKEISSRQFIYVVV 490

Query: 130 AWIIGSLPFCV-STLVYFTSPGYMNV-------LINDPRGHMLLGVAAAF-MLIGIMVMR 180
            ++   L       +V+   P  +            +     +L  +      +GI+  R
Sbjct: 491 IYLTFFLYIGTSYIMVHSLLPTLLKNVQGLSVDFYRNYLFQGILIYSIFSGASLGILTER 550

Query: 181 LMI 183
            +I
Sbjct: 551 SII 553


>gi|255658143|ref|ZP_05403552.1| putative pilus assembly protein PilC [Mitsuokella multacida DSM
           20544]
 gi|260849450|gb|EEX69457.1| putative pilus assembly protein PilC [Mitsuokella multacida DSM
           20544]
          Length = 408

 Score = 51.7 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 55/156 (35%), Gaps = 6/156 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            L  +   ++AG+PV  A+ ++     + P +S  + +++    G  L E +++  +   
Sbjct: 74  FLRQMAAMMQAGMPVHQALEILSRSDGNPPYQSFLQDLLKGIMAGHPLHEMLAQHPQL-- 131

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               S     +    +  G+L++  A L+     R   +  +++  +       +     
Sbjct: 132 ---FSASLCGLVRAGEASGSLTQIFAQLADFEEHRYEAREALKSALLYPVILLVVAVVSL 188

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             ++  V       +  L  +      L +     +
Sbjct: 189 VLMTVFVLPAFAAMLQDLRAELPWTTKLLLTLMAFV 224


>gi|307352385|ref|YP_003893436.1| type II secretion system F domain-containing protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307155618|gb|ADN34998.1| Type II secretion system F domain protein [Methanoplanus
           petrolearius DSM 11571]
          Length = 646

 Score = 51.7 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 62/150 (41%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +++        P+ L+ +    R GL ++ A+ V+V  +   +  E RR+      G S+
Sbjct: 420 RRKLKSIESSIPDFLERLSGINRVGLTIAGAINVLVKANLGLISYEIRRIKRDLEWGASV 479

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           ++++ R    +    ++   T+I+  S++ G++ E L   S   R  + +K + Q     
Sbjct: 480 NDALIRFEERVNTAAIARTVTLITKASEMTGDIGEVLGIASADARMSETLKKERQGEMFI 539

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                ++   +   V  ++       +  L
Sbjct: 540 YTVIIYLAFFVFIFVVAVLNTNFLEILEQL 569


>gi|254241103|ref|ZP_04934425.1| hypothetical protein PA2G_01790 [Pseudomonas aeruginosa 2192]
 gi|126194481|gb|EAZ58544.1| hypothetical protein PA2G_01790 [Pseudomonas aeruginosa 2192]
          Length = 395

 Score = 51.7 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 72/177 (40%), Gaps = 13/177 (7%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQH 60
           ++L  +R  K  ++   A+  +   + AG+ ++DAV      +    + +  + +     
Sbjct: 46  RNLGSRRRLK-AEELNMAIHELATMLAAGVSMADAVEAQERGARHPKLITALQAMANGLR 104

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S    +          ++  +   +    ++ GNL+ AL + +  +   +  +A++Q
Sbjct: 105 QGQSFPVVLESAGL-----DLPRYVYQLVAAGEMTGNLAGALRDCATQMEYERRTRAELQ 159

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
              +       ++ S    V+TL  F  P + N+L    +   L  +A A + IG+ 
Sbjct: 160 GALIYPA---ILVLSGVLAVATLFVFVVPKFANLLNETAQ---LPWLAWAVLSIGVW 210


>gi|218891163|ref|YP_002440029.1| putative type II secretion system protein [Pseudomonas aeruginosa
           LESB58]
 gi|254235656|ref|ZP_04928979.1| hypothetical protein PACG_01590 [Pseudomonas aeruginosa C3719]
 gi|126167587|gb|EAZ53098.1| hypothetical protein PACG_01590 [Pseudomonas aeruginosa C3719]
 gi|218771388|emb|CAW27155.1| probable type II secretion system protein [Pseudomonas aeruginosa
           LESB58]
          Length = 395

 Score = 51.7 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 72/177 (40%), Gaps = 13/177 (7%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQH 60
           ++L  +R  K  ++   A+  +   + AG+ ++DAV      +    + +  + +     
Sbjct: 46  RNLGSRRRLK-AEELNMAIHELATMLAAGVSMADAVEAQERGARHPKLITALQAMANGLR 104

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S    +          ++  +   +    ++ GNL+ AL + +  +   +  +A++Q
Sbjct: 105 QGQSFPVVLESAGL-----DLPRYVYQLVAAGEMTGNLAGALRDCATQMEYERRTRAELQ 159

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
              +       ++ S    V+TL  F  P + N+L    +   L  +A A + IG+ 
Sbjct: 160 GALIYPA---ILVLSGVLAVATLFVFVVPKFANLLNETAQ---LPWLAWAVLSIGVW 210


>gi|326576496|gb|EGE26404.1| type IV pilus assembly protein PilC [Moraxella catarrhalis CO72]
          Length = 419

 Score = 51.7 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/174 (9%), Positives = 58/174 (33%), Gaps = 7/174 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71
                 +L  +   + +G+ ++DA+ +     ++  + ++  ++ +    G + +++I+ 
Sbjct: 80  NKQILLSLRTLATLLTSGVVLTDALDIAAKTTTNGRLSNKLIQIKQCIEQGENFTQAIAS 139

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              +         +  +    +  G L   L   +     +   ++++        A A 
Sbjct: 140 HPEFG------SLALALIDAGEKSGTLDIMLERAAEHAEQQALRQSQLNQALRYPAAIAL 193

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
               +   +   V  +       + N+     L  ++ +  L       L++  
Sbjct: 194 TSLIVSTVMLLKVVPSFAASFGNMGNELPTITLWVLSLSQWLSANFWQLLLVAI 247


>gi|294793881|ref|ZP_06759018.1| putative bacterial type II secretion system protein F domain
           protein [Veillonella sp. 3_1_44]
 gi|294455451|gb|EFG23823.1| putative bacterial type II secretion system protein F domain
           protein [Veillonella sp. 3_1_44]
          Length = 391

 Score = 51.7 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 52/159 (32%), Gaps = 13/159 (8%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           +    +   + +G+P+  A+ ++       + +     IE              + + + 
Sbjct: 60  DVTYQLGLLIESGVPLRRALQLLCQGKRGLLYTALYESIERGQT----------LSQALR 109

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +     +  +    +  G L E+L  +SR     + +K KV +         +++  + 
Sbjct: 110 SEGCPPIALALLESGEAAGTLGESLQYISRHYDWERQLKQKVMSAISYPL---FLLLMMN 166

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
                 + F  P +  V         L+  A   +  G+
Sbjct: 167 IFFLVTILFIIPSFEQVFTTMHITLPLMTRALFALGQGL 205


>gi|289192868|ref|YP_003458809.1| Type II secretion system F domain protein [Methanocaldococcus sp.
           FS406-22]
 gi|288939318|gb|ADC70073.1| Type II secretion system F domain protein [Methanocaldococcus sp.
           FS406-22]
          Length = 299

 Score = 51.7 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 66/143 (46%), Gaps = 1/143 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L + +     ++ P AL I++ ++ +G  +++A+  +V  +   V   FR+V+       
Sbjct: 75  LYENKIETLENNIPQALYIMILALESGRSINEALLEVVKSNIKEVSDIFRKVLYLMENQK 134

Query: 64  -SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S  ES++ +      + +   + ++    + GG+L+++L  L++ L D K  K ++ ++
Sbjct: 135 LSFEESMTIVSNLYDSKVLRMLARIMIENRKYGGDLADSLKILAKTLEDFKMYKKQLLSV 194

Query: 123 SMEAKASAWIIGSLPFCVSTLVY 145
           +    A  +II          + 
Sbjct: 195 TASGLAIGFIILCGVIPAVAALL 217


>gi|319944024|ref|ZP_08018304.1| exopolyphosphatase [Lautropia mirabilis ATCC 51599]
 gi|319742785|gb|EFV95192.1| exopolyphosphatase [Lautropia mirabilis ATCC 51599]
          Length = 402

 Score = 51.7 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 57/159 (35%), Gaps = 9/159 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISR 71
             D       +   + A LP+  A+  +V Q+      E F  V      G +L+ ++++
Sbjct: 62  DADLALCTRQLSSLLTARLPLEKALNAVVEQAESARVRERFAAVRSDVVSGQTLTAAMAK 121

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             R     +       +    +  G+L++ ++ L+  + +R  + +KV+         A 
Sbjct: 122 FPR-----DFPDTYRALISAGEQSGDLAQVMSRLAAYVENRTQLVSKVKMAFTYPIIVAV 176

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           +   +   +     +  P  + V     +   LL +   
Sbjct: 177 VAVLVIIALL---TYVVPQVVQVFNQTRQDLPLLTLILI 212



 Score = 36.6 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 36/130 (27%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +     +G+P+  A+       ++     E R  +     G  L+ ++       P
Sbjct: 271 FASTLAILTASGVPLIRALEAGADTLNNTAMKAEVREALGRVREGAPLARALGAGKTLPP 330

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     ++   +  G L + L   +  L      K       +E        G + 
Sbjct: 331 ------LLIHMTASGEATGELPQMLERAAETLSQEVERKTLTMTTLLEPILILITGGIVL 384

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 385 MIVLAVLLPI 394


>gi|148252840|ref|YP_001237425.1| general secretion pathway protein F [Bradyrhizobium sp. BTAi1]
 gi|146405013|gb|ABQ33519.1| General secretion pathway protein F [Bradyrhizobium sp. BTAi1]
          Length = 403

 Score = 51.7 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/182 (11%), Positives = 54/182 (29%), Gaps = 27/182 (14%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   ++AG  + DA+ ++ G S    +R    R+      G S +++ +   R   
Sbjct: 69  FTRDLALLLKAGARLDDALELLSGDSEVGRLRPVVARLRTAIMAGESFADAAAAQPRLFS 128

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G L   L  L+      +  + K+           ++  +  
Sbjct: 129 P-----MYVALMRVGEASGTLDHVLTALAGERERSEATRRKLTDAMQYPA---FVFLAAI 180

Query: 138 FCVSTLVYFTSPGYMNVL------INDPRGHML------------LGVAAAFMLIGIMVM 179
             +   +    P +  VL       +   G  +            + +  A ++  +  +
Sbjct: 181 GVMLFFLVAVLPNFSAVLRDFGGRADTALGFFMSLSDIVRANAAAITLGCAMLIAAVWWL 240

Query: 180 RL 181
             
Sbjct: 241 LR 242


>gi|161525988|ref|YP_001581000.1| type II secretion system protein [Burkholderia multivorans ATCC
           17616]
 gi|160343417|gb|ABX16503.1| type II secretion system protein [Burkholderia multivorans ATCC
           17616]
          Length = 405

 Score = 51.7 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/145 (9%), Positives = 40/145 (27%), Gaps = 6/145 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   ++AGLP++ A+ ++   ++   +      +      G   + +++  
Sbjct: 66  RDVTRFTRQLASLLQAGLPLAPALDMLSRTRTHGGLPRIAAGLAREIVDGQRFAAALALY 125

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G L   L  ++           K++A           
Sbjct: 126 PSQFG-----TLYRQLIEVGEASGALGTVLMRIAEHRERADAQWRKLRAALAYPAVVILF 180

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIN 157
             ++   +   V  T     +    
Sbjct: 181 ALAIAAALMVWVVPTFRQIFDGFGT 205



 Score = 34.7 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 42/130 (32%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+P++DA A +   +   V      ++      G  L++++     +  
Sbjct: 275 WCRSLATLLGAGVPLADAFATLERTAGHHVFERASTQIAARVLRGARLADAMQASGCFPD 334

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                         ++  G L   LA+++ +   + + +    A   E      +   + 
Sbjct: 335 DIVQP------IAVAEETGALDTMLADIATLSEHQLDARIDTLAALGEPLIVIVLGALVG 388

Query: 138 FCVSTLVYFT 147
             V  +    
Sbjct: 389 GLVIAMYLPI 398


>gi|23308787|ref|NP_599553.2| hypothetical protein NCgl0296 [Corynebacterium glutamicum ATCC
           13032]
 gi|62389199|ref|YP_224601.1| membrane protein [Corynebacterium glutamicum ATCC 13032]
 gi|41324532|emb|CAF18872.1| membrane protein [Corynebacterium glutamicum ATCC 13032]
          Length = 258

 Score = 51.7 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 60/183 (32%), Gaps = 7/183 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--PVRSEFRRVIETQH 60
           H   +RT +      + L +   ++RAG+ + DA+   +  ++    +    +       
Sbjct: 75  HAAAQRTKQ-SLQLASFLSLCAGNLRAGVTMVDAMDYALDNTTPDKFLSPTLQTAARQAR 133

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S    +          ++     +     + G  L   +  +   +  ++      +
Sbjct: 134 SGGSGPRVLIDASL----PDLQRLGHLWETSERHGIPLVALIDQMRSRISSKQRHGESTR 189

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A     +A+A I+  LP     +        + +L     G  LL +       G ++  
Sbjct: 190 AALQGPQATAVILTVLPLAGMLMGTAMGANPLGLLTGGGIGGFLLVIGVGLDAAGFVLTH 249

Query: 181 LMI 183
            ++
Sbjct: 250 KIL 252


>gi|256396008|ref|YP_003117572.1| integral membrane protein [Catenulispora acidiphila DSM 44928]
 gi|256362234|gb|ACU75731.1| putative integral membrane protein [Catenulispora acidiphila DSM
           44928]
          Length = 290

 Score = 51.7 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/172 (9%), Positives = 59/172 (34%), Gaps = 2/172 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +      +++   + +   +  AV      + + +      +          ++++  + 
Sbjct: 104 EAVAVWAEMLRDVLSSAAGLEQAVLASTTVAPEAIAGPLAALGSDLRARRPFADAMRALA 163

Query: 74  RYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           +    +    NL+E L  L+   R + ++  +V A   + + S   
Sbjct: 164 AQLGDATADQVIVSLIHAQKFQAKNLAELLGELAAAARAQVSLAVRVHAERAKHRTSQRA 223

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           I  +   ++  +    P ++    +   G M++ V  A     +  +++++ 
Sbjct: 224 ITVIFTLMALGLCVFYPKFLRP-YDTVGGQMVMAVVVAMFAGALCWIQIILR 274


>gi|254284153|ref|ZP_04959121.1| type II secretion system protein [gamma proteobacterium NOR51-B]
 gi|219680356|gb|EED36705.1| type II secretion system protein [gamma proteobacterium NOR51-B]
          Length = 397

 Score = 51.7 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 56/174 (32%), Gaps = 8/174 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71
             +  +    +   +RAGL +  A+ V++       +R+    V+++   G +LS ++  
Sbjct: 57  RQEILSMTSELSTLLRAGLSLDRALKVLIDMDGQPRMRAVISEVLKSVKGGKALSIALQP 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                       F   +    +  G LS  L  L   L   K  +  V +  +       
Sbjct: 117 FEASFG-----TFYLSMVRAGEASGQLSSVLDRLVEHLESAKTTRDSVISALIYPAILLV 171

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVMRLMI 183
           +       +   V          + +   P    ++G A      G  ++ ++ 
Sbjct: 172 VAVISIVVMLGFVVPQFETLFADMGDALPPMTKAVVGAAEFIKAWGFALLIVIA 225


>gi|254447703|ref|ZP_05061169.1| general secretion pathway protein F [gamma proteobacterium
           HTCC5015]
 gi|198263046|gb|EDY87325.1| general secretion pathway protein F [gamma proteobacterium
           HTCC5015]
          Length = 383

 Score = 51.7 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 60/163 (36%), Gaps = 6/163 (3%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSE 67
             ++   +P  +  + +   AG+P+++A+  +  ++         + +      G  LS+
Sbjct: 52  RRQWRQSWPLVVRQLRQLSAAGVPLAEAMDALSQEAEPVAWAQLLQDLARDLSAGQRLSQ 111

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +++R   ++P   +      +    +  G L   L  L++IL  R+  +++         
Sbjct: 112 ALARFEEHLPEPSM-----SLIQAGENSGTLERQLDTLAQILEWREARRSEAINALFYPA 166

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
            +A    +    +   +      ++  L  D   +     A +
Sbjct: 167 VAALATLAAAGFLLLYLVPKLAPFLRELGVDLPFYSRFLFAFS 209


>gi|238019095|ref|ZP_04599521.1| hypothetical protein VEIDISOL_00957 [Veillonella dispar ATCC 17748]
 gi|237864350|gb|EEP65640.1| hypothetical protein VEIDISOL_00957 [Veillonella dispar ATCC 17748]
          Length = 391

 Score = 51.7 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/159 (10%), Positives = 52/159 (32%), Gaps = 13/159 (8%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           +    +   + +G+P+  A+ ++       + +     IE              + + + 
Sbjct: 60  DVTYQLGLLIESGVPLRRALQLLCQGKRGLLYTALYESIERGQT----------LSQALR 109

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +     +  +    +  G L E+L  +SR     + ++ KV +         +++  + 
Sbjct: 110 SESCPAIALALLESGEAAGTLGESLQYISRHYDWERQLRQKVISAISYPL---FLLVLMN 166

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
                 + F  P +  V         ++  +   +  G+
Sbjct: 167 IFFLVTILFIIPSFEKVFTTMHITLPVMTRSLFALGQGL 205


>gi|237741036|ref|ZP_04571517.1| general secretion pathway protein F [Fusobacterium sp. 4_1_13]
 gi|229431080|gb|EEO41292.1| general secretion pathway protein F [Fusobacterium sp. 4_1_13]
          Length = 346

 Score = 51.7 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 66/170 (38%), Gaps = 13/170 (7%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGL 63
           +K +  K L       + +   +++GL  + A+ +I+ +  D    E  +++ +    G 
Sbjct: 1   MKNKKEKIL----FFTNELAIMLKSGLTFTTAIEIILKEEKDKNFKEVLKKIHKNLIAGK 56

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S+ ES     R             +    ++ G+++E L ++S+ L      + K+  + 
Sbjct: 57  SIFESFKNFDRIFGN-----TYLYMLKIGEVNGSIAERLEDISKSLEFDLANQKKLGGIL 111

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           +       +I      V+ L+ F  P ++ +   +     L+     F+ 
Sbjct: 112 VYPI---VVISLTFIIVTFLLTFILPDFITIFEENQVELPLITKILLFIS 158


>gi|227494419|ref|ZP_03924735.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
 gi|226832153|gb|EEH64536.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
          Length = 351

 Score = 51.7 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 46/157 (29%), Gaps = 18/157 (11%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           +R G+ V  A           V +E            S   +  ++   +          
Sbjct: 63  LRCGMSVPQAWEQACEDLQVGVDAEEVLNQPEFAQVASSIRAAGKVSAEIG--------- 113

Query: 87  VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
                      L++AL  +   L + +     ++      +A+  ++ +LP     L + 
Sbjct: 114 ---------VGLADALEAIVGSLEEAEENAKSLEVAFASTQATVRLLAALPAVGLGLAWL 164

Query: 147 TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
                   +     G ++        + G + +R ++
Sbjct: 165 LGADLPAFITGTFWGWLVAVAGGGLWVAGFVWVRRLV 201


>gi|167571329|ref|ZP_02364203.1| type IV pilus biogenesis protein PilC [Burkholderia oklahomensis
           C6786]
          Length = 405

 Score = 51.7 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/158 (11%), Positives = 43/158 (27%), Gaps = 6/158 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   + AGL ++ ++ ++   +    +      +      G   S ++ R 
Sbjct: 66  RDVTRFTRQLAGLLHAGLALAPSLELLAQATQRSEMPRIAAGLAREIIAGRQFSAALRRY 125

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R             +    +  G L++ LA L+          A+V+       A    
Sbjct: 126 PRQFDP-----LFCQLVAVGETAGALAKVLARLADDRERAAAQHARVRGALAYPVAVLLF 180

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             ++   +   V  T                   +  +
Sbjct: 181 ALAITAALLIWVVPTFEQIFAGFGAALPAPTRFILTLS 218


>gi|313498630|gb|ADR59996.1| Type II secretion system protein [Pseudomonas putida BIRD-1]
          Length = 396

 Score = 51.7 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 65/179 (36%), Gaps = 13/179 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           ++ +  +R A F  D       +   + AGLP+ DA+  +  +S     R     ++   
Sbjct: 47  LRGMAWRREAAF--DLVLFSQELSTLLNAGLPLIDALESLAEKSPAATARKVLAELVRQL 104

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           + G SLS+++ +  R  P          +   S+  G L +AL       +    ++ K+
Sbjct: 105 YEGRSLSQALGQQPRVFPP-----LYVALVQSSERTGALGDALTRYISYRQRLDLVRQKL 159

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
              S+       + G +   +   V          +     G  L  ++   M +G+ +
Sbjct: 160 VGASVYPLLLLLVGGGVVLFLLGYVVPRFSQVFEGM-----GTELPWLSRVLMQVGLFL 213


>gi|239629080|ref|ZP_04672111.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519226|gb|EEQ59092.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 418

 Score = 51.7 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 47/162 (29%), Gaps = 11/162 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV----------GQSSDPVRS 50
           +K    KR  + L D+   L  ++  + AG+ +  A   +            Q       
Sbjct: 256 VKKDENKRKHQLLLDYSEVLSRLIIFLGAGMSIRTAWDKVAFDYQKLVDDGKQKPRYAYQ 315

Query: 51  EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQS-QLGGNLSEALANLSRIL 109
           E          G+    +     R   LQ+    S+++         NL + L       
Sbjct: 316 EMYETSCQMRGGVPEGRAFMDFGRRCGLQQYMKLSSLLEQNRKNGSKNLRDTLKVEMAEA 375

Query: 110 RDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
            +++  +A+        K    +   L   +  +       +
Sbjct: 376 FEQRKHQARRLGEEAGTKLLLPLFMMLSVVMVVIAVPALMEF 417


>gi|28871970|ref|NP_794589.1| hypothetical protein PSPTO_4855 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213968012|ref|ZP_03396158.1| membrane protein [Pseudomonas syringae pv. tomato T1]
 gi|301383672|ref|ZP_07232090.1| hypothetical protein PsyrptM_13608 [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059959|ref|ZP_07251500.1| hypothetical protein PsyrptK_08205 [Pseudomonas syringae pv. tomato
           K40]
 gi|302131625|ref|ZP_07257615.1| hypothetical protein PsyrptN_09542 [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28855223|gb|AAO58284.1| membrane protein, putative [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213927355|gb|EEB60904.1| membrane protein [Pseudomonas syringae pv. tomato T1]
 gi|331014704|gb|EGH94760.1| hypothetical protein PLA106_02330 [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 294

 Score = 51.7 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 67/157 (42%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +    ++R  K + +    + ++     +G+ V  A+ V+  +       +  E R V+ 
Sbjct: 134 LAAAAQRRQKKVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSDEIRVVLT 193

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL L E + +    + + E+S    +++     GG   ++L  L +++ DR+  + 
Sbjct: 194 RVDSGLELGEELRKTAALLAVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 253

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +     + AK S  ++  L   +  ++    PG++ +
Sbjct: 254 QEYISKLSAKMSVVMMVFLFPALLIVL--AGPGFIAI 288


>gi|312114555|ref|YP_004012151.1| type II secretion system F domain protein [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311219684|gb|ADP71052.1| Type II secretion system F domain protein [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 396

 Score = 51.7 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 59/194 (30%), Gaps = 18/194 (9%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQH 60
           +     R   F     N    +   ++AGL + +++A++        +    R V+   +
Sbjct: 46  RSAASSRRPPF-KHIANFNRELTVLLQAGLSIPESLALLAVRPGQPRLEKALRLVLSEVN 104

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL E +S+                +    +  G L   L         +  M+A+V 
Sbjct: 105 RGGSLREGMSKA-----QGAFDADYIALVGTGEEAGALPNCLQRYQNYADLKMKMRAQVL 159

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH-----------MLLGVAA 169
                  A    + ++   +   V     G    L ++                 + +  
Sbjct: 160 KTMTYPAALLATLSAVLTFLFLEVIPNFIGMYRELGSELPAPTQILIAVERHFPAIAIGI 219

Query: 170 AFMLIGIMVMRLMI 183
              +IG+ ++  + 
Sbjct: 220 TAAVIGVWILDRIA 233


>gi|167620218|ref|ZP_02388849.1| hypothetical protein BthaB_28185 [Burkholderia thailandensis Bt4]
          Length = 268

 Score = 51.7 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66
              +D+ P  +D++      GL +  ++ V+          + SE          G +  
Sbjct: 114 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTRE 173

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+ R+      +++     ++    + GG + E L      LR+ +    + +   +  
Sbjct: 174 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 233

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           K +  +I +L   +   +    PG + V
Sbjct: 234 KMTGVMILTLLPALF--IVTAGPGMLAV 259


>gi|294055942|ref|YP_003549600.1| Type II secretion system F domain protein [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615275|gb|ADE55430.1| Type II secretion system F domain protein [Coraliomargarita
           akajimensis DSM 45221]
          Length = 428

 Score = 51.7 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 58/161 (36%), Gaps = 7/161 (4%)

Query: 28  RAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87
            +G+P+ DA+ V+  + S+P + E    I           +          +  +   + 
Sbjct: 102 SSGMPIGDAIKVLSQRISNPEQKELATAIWRDLS----EGATLATALNRQPRYFASSVSF 157

Query: 88  ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           +    +  G+L+  LA +   L +R  ++ K+ A              +     T++   
Sbjct: 158 VIEAGEATGSLAPILAKVIEYLEERDAIRKKMLASMAYPLVVCTFALGVVILFITVLLPR 217

Query: 148 SPGYMNVLINDPRGHMLLGVAAAFMLIG---IMVMRLMINF 185
               MN +  +      + +  +  LI     +++ L++ F
Sbjct: 218 IQDMMNKIGGEMTWSARILMDGSSFLINFGPYILIALILAF 258


>gi|261402628|ref|YP_003246852.1| Type II secretion system F domain protein [Methanocaldococcus
           vulcanius M7]
 gi|261369621|gb|ACX72370.1| Type II secretion system F domain protein [Methanocaldococcus
           vulcanius M7]
          Length = 562

 Score = 51.7 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 58/171 (33%), Gaps = 9/171 (5%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
            +    +P  L+ +  +VR+G+ +  A+ V    +  P+    +++      G  ++E  
Sbjct: 356 NQKEKYYPIFLNDLTMAVRSGMDIIRAMQVCAKTNYGPLTKIVKKMAIQMSWGRPVNEVF 415

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
             + R          ++++   +  GG++ + L +++        MK ++ A        
Sbjct: 416 EDLERTEKSLIAKRIASILKECAVSGGDIKDILTSVTVHAYKLSEMKREISARQFIYVVV 475

Query: 130 AWIIGSLPFCV-STLVYFTSPGYMN--------VLINDPRGHMLLGVAAAF 171
            ++   L       +++   P  +                   +L  A   
Sbjct: 476 IYLSFFLYLGTSYIMIHSLLPTLLKNVHGGLGIEFYKSYLFQGVLIYALFS 526


>gi|148259903|ref|YP_001234030.1| type II secretion system protein [Acidiphilium cryptum JF-5]
 gi|146401584|gb|ABQ30111.1| type II secretion system protein [Acidiphilium cryptum JF-5]
          Length = 406

 Score = 51.7 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 11/163 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
           D   +    +   + AGL +  A+    G  ++  VR+    + +    G +L  ++   
Sbjct: 67  DALADFTRELAAMLGAGLDLERALRFAAGTAATPRVRAIILAICDKVRDGAALWRALGHE 126

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R  P      F   +    +  G L+  L +L+ +L   ++++A + A        A  
Sbjct: 127 PRSFPP-----FYVGLVRAGEESGALAATLEDLAELLERNRSLRAAMIAGLTYPALLALA 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
                  +  L+    P ++ +   +  G  L       + IG
Sbjct: 182 ATG---AIVFLLTNVLPEFVPIFAEN--GVPLPATTRLLLTIG 219


>gi|154151444|ref|YP_001405062.1| type II secretion system protein [Candidatus Methanoregula boonei
           6A8]
 gi|153999996|gb|ABS56419.1| type II secretion system protein [Methanoregula boonei 6A8]
          Length = 224

 Score = 51.7 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 59/178 (33%), Gaps = 5/178 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGL-SL 65
           R        P A++ I     AG+  ++   ++           E R +     +    L
Sbjct: 43  RRRNIDATLPYAINYITSMSTAGITPAEIFRLLGDSPIYGESSVEARYIARELDIFGRDL 102

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++  +    P   +  F          GGNL+E     +           K+   ++ 
Sbjct: 103 IDALRIVSSSTPSLRMKEFLQGAMASISSGGNLTEYFRTKAAQYALENRQTQKLFLDTLA 162

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             + +++   +   +  ++       M+VL  D +   L  V    +  G M+  +MI
Sbjct: 163 LISESYVTAMVAGTLFLIIL---QSIMSVLGGDSKPIFLYVVIYLMIPFGTMMFIIMI 217


>gi|77917747|ref|YP_355562.1| type II secretory pathway, component PulF [Pelobacter carbinolicus
           DSM 2380]
 gi|77543830|gb|ABA87392.1| type II secretory pathway, component PulF [Pelobacter carbinolicus
           DSM 2380]
          Length = 401

 Score = 51.3 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 56/173 (32%), Gaps = 7/173 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
              F      ++  +R+GLP+   +   + +    P++   ++V E    G SLS +  +
Sbjct: 62  SRQFLTFNQEMLVLLRSGLPMLQVLDATLERLDAGPLQRSVQQVREAVKGGASLSSAFGQ 121

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             RY P               +  G+L+  +       +    +K KV+  +        
Sbjct: 122 FPRYFPY-----LYLAALQAGEQTGDLAVTIQRYVNYQKRIGQVKNKVKMAAFYPAMLCL 176

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRLMI 183
               +   +   V             D      L +  A +L G  + +  ++
Sbjct: 177 AAIGILVFMVLFVVPRFAEIFRDAKLDLPWVTRLLITLADLLTGHFLWLVPIV 229



 Score = 35.1 bits (79), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/137 (10%), Positives = 36/137 (26%), Gaps = 5/137 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
                 N    +   + +G+P+  A+ +     ++            +        S   
Sbjct: 264 LEYSLLNFTRTLATLMSSGIPLLPAMRMSRKTLNNRYLENHLEQAAERITEGKTPASALE 323

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              + P       +  +    +  G L E L  ++    D+   +    +  +E      
Sbjct: 324 EAGFFP-----SLALRMVKAGERSGALQEMLLEVAGYYEDQVEERLWRLSSMIEPLMMLL 378

Query: 132 IIGSLPFCVSTLVYFTS 148
           I   +   V  +     
Sbjct: 379 IGLLIGGVVVAMYIPIF 395


>gi|308068034|ref|YP_003869639.1| hypothetical protein PPE_01259 [Paenibacillus polymyxa E681]
 gi|305857313|gb|ADM69101.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 290

 Score = 51.3 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 62/148 (41%), Gaps = 5/148 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG----QSSDPVRSEFRRVI 56
           +   ++KR  + L + P  L  ++  V AG  V  A+   V      +  P+  E R+ +
Sbjct: 133 LHGKVQKRDQQILMELPELLSKMMLLVGAGETVQRALLHCVERKGADTEHPLYRELRQTV 192

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVS-FFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                G S  ++   + +   +QE++ F +TV+    + G +   AL  LS+ L  ++  
Sbjct: 193 AEWESGFSFQQAFEHLSKRCGIQEMTVFTTTVLLNMRRGGSDFVMALRELSQTLWGKRTS 252

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTL 143
            ++ +     +K    +   L   +  +
Sbjct: 253 ISRTRGEQASSKLVFPMALILLTVIVLV 280


>gi|303244717|ref|ZP_07331048.1| Type II secretion system F domain protein [Methanothermococcus
           okinawensis IH1]
 gi|302484931|gb|EFL47864.1| Type II secretion system F domain protein [Methanothermococcus
           okinawensis IH1]
          Length = 295

 Score = 51.3 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 83/197 (42%), Gaps = 17/197 (8%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLG 62
           + + +  KF  + P AL +++ S+ +G  V DA+  ++      V   F +++       
Sbjct: 75  MYESKIEKFERNLPKALYVMILSLESGRSVIDAINEVINSGIKEVDVIFLKIVALMTEKK 134

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           LS  +SI  +   +  +       +I    + GG L+E L  L++ L D +N+K ++ ++
Sbjct: 135 LSFEDSIILVSNSIDSKIFRQIGRLIIENRKHGGELAEVLKTLAKTLEDLQNLKNQLLSV 194

Query: 123 SME--AKASAWIIGSLPFCVSTL-------------VYFTSPGYMNVLINDP-RGHMLLG 166
           +    A     I G +P     +             +   +P  +   + +   G  + G
Sbjct: 195 TANGLAVGLIIICGVIPATAGIIGGYLNAISQVAPNIAAVTPEQLAKCMENVQIGTGIFG 254

Query: 167 VAAAFMLIGIMVMRLMI 183
           +  A  + G+ V R++I
Sbjct: 255 ILFAVPIFGLKVNRMII 271


>gi|291547183|emb|CBL20291.1| Type II secretory pathway, component PulF [Ruminococcus sp. SR1/5]
          Length = 347

 Score = 51.3 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 56/168 (33%), Gaps = 12/168 (7%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            +  +    +   + +G+  ++ + ++  +S  D  R     +I +     SLS ++   
Sbjct: 8   RELSSFCGQMGMLLHSGISTAEGLHILCDESKTDADRQILTPLIRSVEENGSLSRALDES 67

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                        T      +  G L E + +LS      + +  ++++          +
Sbjct: 68  G------IFPTSMTAYVRTGEETGCLDEIMESLSSHYEQEEEISGQIRSAVTYPLLMLGM 121

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           +  +   +   V        N +     G  + GV+   +  G ++ R
Sbjct: 122 MAVVILVLLIKVLPVFQQVFNQM-----GMEMNGVSRGLLNAGNVISR 164


>gi|300933725|ref|ZP_07148981.1| hypothetical protein CresD4_06604 [Corynebacterium resistens DSM
           45100]
          Length = 377

 Score = 51.3 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 62/191 (32%), Gaps = 10/191 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-----GQSSDPVRSEFRRV 55
           ++    +R  +   +F  A+    R  +AG    DAV            ++       R 
Sbjct: 26  LRDKRTRRKIELEREFIGAV---SRESQAGARPEDAVLAAAQFVDDEAIANGALQLVARY 82

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVS--FFSTVISVQSQLGGNLSEALANLSRILRDRK 113
             +      ++        +    + +  +F  +  + ++ G  LS      +  +    
Sbjct: 83  RLSIQGDKDVAADAGEGAEHGSSTQRNLGYFCQLWGIATERGIPLSVLAEAYACDIDAAL 142

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             + K ++    A+ +  ++ +LP     L      G     + +P G +L+ V +    
Sbjct: 143 ERREKYESAMAGARLTVTVLLALPIGAVILGQTMGLGTPQFFVRNPLGALLVLVGSVLGC 202

Query: 174 IGIMVMRLMIN 184
            G+     +  
Sbjct: 203 AGVQWTEFLTR 213


>gi|119719714|ref|YP_920209.1| type II secretion system protein [Thermofilum pendens Hrk 5]
 gi|119524834|gb|ABL78206.1| type II secretion system protein [Thermofilum pendens Hrk 5]
          Length = 295

 Score = 51.3 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 65/172 (37%), Gaps = 3/172 (1%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
                  P     +  +VR+GL + +A++ +       V    R+V+    +G++  E+I
Sbjct: 82  RSVESVLPELFKGLAEAVRSGLTLPEALSSVAETLGGEVGKMLRQVVLLTEMGVTFQEAI 141

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
           +R      L  +    +++    + GG + +AL   ++I    ++ + +          +
Sbjct: 142 ARAFSRYRLPSLDRLGSILLTAYESGGKVIDALETSAQIFGAIRSYEEERATTINPHVLT 201

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL---GVAAAFMLIGIMV 178
            +    L   +S  + +     ++ L   P     +     AA     G+M+
Sbjct: 202 IYAATILYVILSLTILYVFVMPLSRLQGIPGALGKINPGVYAAVMYYSGVMI 253


>gi|307352779|ref|YP_003893830.1| type II secretion system F domain-containing protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307156012|gb|ADN35392.1| Type II secretion system F domain protein [Methanoplanus
           petrolearius DSM 11571]
          Length = 603

 Score = 51.3 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/179 (11%), Positives = 61/179 (34%), Gaps = 4/179 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQHLGL-S 64
           R  +   D P A+  + +++   + +      +         V  E   +I         
Sbjct: 100 RKTRIELDLPYAVTYM-QALSTTMTLFSIFKSVSDNEDLYGEVSKECGMIIRDVEYFGDD 158

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L  ++  +    P    S     +++  + GG++++  A+ S   R+    + +    +M
Sbjct: 159 LLTAMRNVQESTPSPTFSELLNDLAMVFKTGGSMTDFFASKSAHYRETAMQELENTLKTM 218

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           E  A  ++   +   ++ ++   +         D    ++           I ++ +M+
Sbjct: 219 EIMAEIYVTAFVAGPIAIMIMVVAQNLSGQSTIDLLEPLMYIGLPIGASAMIFLLYIMM 277



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 53/146 (36%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
            KF    P  L  I      G+ +  A+ +I       + SE +   E   +G S+S ++
Sbjct: 398 KKFESQLPGFLREISDMKDMGMTLQSAIHIIAQSKIGVLTSEVKIASEEIKMGTSVSSAL 457

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            ++   + L  V    +++   S++  +L E LA     L     MK +   +S    A 
Sbjct: 458 YKLEERIGLVSVKRAISLVIKASEITDHLREILAIAISDLEHYLRMKNERFGVSFIYVAI 517

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVL 155
            ++   +    +  +  +        
Sbjct: 518 IYLSYGIFLYSAYELNVSFVQSFMDF 543


>gi|218886131|ref|YP_002435452.1| type II secretion system protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757085|gb|ACL07984.1| type II secretion system protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 405

 Score = 51.3 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/187 (10%), Positives = 57/187 (30%), Gaps = 28/187 (14%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            +            +AG+P++  + V+  Q+    ++     + ++   G +L ++    
Sbjct: 64  KELILFTKQFRTLFQAGIPITQLLQVLQNQTESKRLKQIAADMAQSIVGGSTLYDAFRAH 123

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R       S     +    +  G L + +  L  +L     +++ +++     K    +
Sbjct: 124 PR-----VFSELYCSMMRAGEASGALGDVMERLVYLLEHEHKIRSDIKSAMRYPK---MV 175

Query: 133 IGSLPFCVSTLVYFTSPGYMNVL------------------INDPRGHMLLGVAAAFMLI 174
           + +L      L+    P ++ +                           ++       + 
Sbjct: 176 VSALLAAFFILLNVVIPKFVVIFARAKIELPWPTQVAMGMHYIMTTYWPIVLGLLVAAIA 235

Query: 175 GI-MVMR 180
           G    +R
Sbjct: 236 GYKWWVR 242


>gi|167911130|ref|ZP_02498221.1| type II secretion system protein [Burkholderia pseudomallei 112]
          Length = 267

 Score = 51.3 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66
              +D+ P  +D++      GL +  ++ V+          + SE          G +  
Sbjct: 113 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 172

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+ R+      +++     ++    + GG + E L      LR+ +    + +   +  
Sbjct: 173 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 232

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           K +  +I +L   +   +    PG + V
Sbjct: 233 KMTGVMILTLLPALF--IVTAGPGMLAV 258


>gi|167738780|ref|ZP_02411554.1| type II secretion system protein [Burkholderia pseudomallei 14]
          Length = 271

 Score = 51.3 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66
              +D+ P  +D++      GL +  ++ V+          + SE          G +  
Sbjct: 117 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 176

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+ R+      +++     ++    + GG + E L      LR+ +    + +   +  
Sbjct: 177 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 236

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           K +  +I +L   +   +    PG + V
Sbjct: 237 KMTGVMILTLLPALF--IVTAGPGMLAV 262


>gi|163782961|ref|ZP_02177956.1| fimbrial assembly protein PilC2 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881641|gb|EDP75150.1| fimbrial assembly protein PilC2 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 397

 Score = 51.3 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 57/162 (35%), Gaps = 10/162 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
            ++    L  +   + AG+ ++ A+ ++  Q+ D  V S    +  +   G  LS +  R
Sbjct: 62  EEELSFVLLQLSVLIEAGISLARALELVASQTEDERVASALLEIKGSVERGEPLSSAFRR 121

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                       F + +   ++ G NL    A   + L    +MK+++            
Sbjct: 122 SGL------FPEFLSEMLTAAETGENLERIFAIAGKHLETVADMKSRIVGAITYPS---V 172

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           +IG   F +   + F  P    VL    R   L+      + 
Sbjct: 173 VIGFSIFALFVAIKFVVPKIAKVLEGFGRELPLVTKVVILLS 214


>gi|268679669|ref|YP_003304100.1| type II secretion system F domain protein [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617700|gb|ACZ12065.1| Type II secretion system F domain protein [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 413

 Score = 51.3 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 73/186 (39%), Gaps = 14/186 (7%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLS 66
           R    +     A+  +     AG+ + D+V  +   +    +++ F+ + +  + GLSL+
Sbjct: 66  RKKIKITSLIAAIRQLSVMTNAGISIHDSVKEVANATVDKTLKTIFQSINDDLNSGLSLT 125

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+          +V   +  +    +  GN++E+L  L+ IL + +  + K +      
Sbjct: 126 QSLMSYRE-----DVGDVTIAMVELGESTGNMAESLEKLAEILEEIEENRQKFKKALRYP 180

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-----IGIMVMRL 181
                ++ ++    + L+ +  P + ++         L      FM       G+ ++  
Sbjct: 181 TT---VVIAIAIAFTILMVYVVPKFKDIFSKLKAELPLPTKILLFMENMINHYGLYLLAG 237

Query: 182 MINFDV 187
           +I   V
Sbjct: 238 LIAIIV 243


>gi|320009994|gb|ADW04844.1| Type II secretion system F domain protein [Streptomyces
           flavogriseus ATCC 33331]
          Length = 270

 Score = 51.3 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 41/132 (31%), Gaps = 3/132 (2%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
                P   D++   + AG    +A   +    + PV     R      LG    E+  R
Sbjct: 125 IARQLPITADLLASCLSAGAGPREAAEAVGESVAGPVGERLARTAAVILLGGEPDEAWRR 184

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                     +  +  ++  S  G   +E ++ L+  +R  +   A  +A       +A 
Sbjct: 185 FGEL---PGAAPLARCMARASSTGAPAAEPVSGLADEIRAERASAAVARAQRAGVLITAP 241

Query: 132 IIGSLPFCVSTL 143
           +          +
Sbjct: 242 VGLCFLPAFLAV 253


>gi|217322869|ref|YP_002327089.1| pilin biogenesis protein (pilC) [Acinetobacter baumannii
           AB307-0294]
 gi|213985997|gb|ACJ56296.1| pilin biogenesis protein (pilC) [Acinetobacter baumannii
           AB307-0294]
          Length = 163

 Score = 51.3 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/122 (9%), Positives = 37/122 (30%), Gaps = 15/122 (12%)

Query: 1   MKHLIKKRTAKFL---------DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51
           ++ + +KR               D       +   ++AG+P+     ++     +P   E
Sbjct: 47  VRTIREKRKNILEGLFKKKVTTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMRE 106

Query: 52  FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
               +      G + + ++ +  ++            +    +  G L   L  ++    
Sbjct: 107 VVLGIKGEVEGGSTFASALRKYPQH-----FDNLFCSLVESGEQSGALETMLDRVAIYKE 161

Query: 111 DR 112
            +
Sbjct: 162 KK 163


>gi|21323066|dbj|BAB97695.1| Hypothetical membrane protein [Corynebacterium glutamicum ATCC
           13032]
          Length = 272

 Score = 51.3 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 60/183 (32%), Gaps = 7/183 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--PVRSEFRRVIETQH 60
           H   +RT +      + L +   ++RAG+ + DA+   +  ++    +    +       
Sbjct: 89  HAAAQRTKQ-SLQLASFLSLCAGNLRAGVTMVDAMDYALDNTTPDKFLSPTLQTAARQAR 147

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S    +          ++     +     + G  L   +  +   +  ++      +
Sbjct: 148 SGGSGPRVLIDASL----PDLQRLGHLWETSERHGIPLVALIDQMRSRISSKQRHGESTR 203

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A     +A+A I+  LP     +        + +L     G  LL +       G ++  
Sbjct: 204 AALQGPQATAVILTVLPLAGMLMGTAMGANPLGLLTGGGIGGFLLVIGVGLDAAGFVLTH 263

Query: 181 LMI 183
            ++
Sbjct: 264 KIL 266


>gi|46579682|ref|YP_010490.1| general secretion pathway protein F [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449097|gb|AAS95749.1| general secretion pathway protein F, putative [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311233478|gb|ADP86332.1| Type II secretion system F domain protein [Desulfovibrio vulgaris
           RCH1]
          Length = 408

 Score = 51.3 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/159 (11%), Positives = 48/159 (30%), Gaps = 7/159 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            +            +AG+P++  + V+  Q+           I  +     +  +     
Sbjct: 67  KELILFTKQFRTLFQAGIPITQLLQVLQNQTEHKRLKA----IAAEMSQAIMGGATLYDA 122

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +  S     +    +  G L E +  L  +L     +++ +++     K    ++
Sbjct: 123 FRAHPKVFSELYCSMMRAGEASGALGEVMDRLVYLLEHEHKIRSDIKSALRYPK---MVM 179

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
           G+L      L+    P ++ +              A  M
Sbjct: 180 GALAVAFFVLLNLVIPKFVLIFSQARITLPWPTKIAIGM 218


>gi|307824595|ref|ZP_07654819.1| Type II secretion system F domain protein [Methylobacter
           tundripaludum SV96]
 gi|307734249|gb|EFO05102.1| Type II secretion system F domain protein [Methylobacter
           tundripaludum SV96]
          Length = 408

 Score = 51.3 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/160 (11%), Positives = 52/160 (32%), Gaps = 7/160 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   ++AG+P+  A++ ++  + +  +      +  +   G  LS +++   +   
Sbjct: 71  FSRQMYTLLKAGIPIMSALSGLLSSTKNKALVKVISEICSSLDSGRELSAALNLHPK--- 127

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               + F   +    +  G L +    L   +   K M  +++A           +    
Sbjct: 128 --VFNGFYVSMIRVGETTGMLDKVFMRLFDHIEFEKFMGEQIKAALRYPTFVMIAMIVAV 185

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHM-LLGVAAAFMLIGI 176
             ++  V          L  +      +L   + FM+   
Sbjct: 186 VVINIFVIPAFAKVFQGLGAELPLMTRILLTCSDFMVTSW 225



 Score = 37.8 bits (86), Expect = 0.72,   Method: Composition-based stats.
 Identities = 13/132 (9%), Positives = 40/132 (30%), Gaps = 5/132 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                     S ++G+P+   + ++     +   ++    +E    G+   ESI R    
Sbjct: 271 LARFARSFALSSKSGVPIMSTLNLVAQTVDNDFIAQK---VEQMRAGVERGESILRTATN 327

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                 +     +    +  G L + +  ++ + +     + K     +E     ++   
Sbjct: 328 TG--VFNPLVLQMIAVGEESGALDDLMEEIADMYQRDVEYEIKTLGAKIEPIMIVFLGIL 385

Query: 136 LPFCVSTLVYFT 147
           +      +    
Sbjct: 386 VLILALGIFLPI 397


>gi|259907441|ref|YP_002647797.1| General secretion pathway protein F (Pectic enzymes secretion
           protein OutF) [Erwinia pyrifoliae Ep1/96]
 gi|224963063|emb|CAX54546.1| General secretion pathway protein F (Pectic enzymes secretion
           protein OutF) [Erwinia pyrifoliae Ep1/96]
 gi|283477273|emb|CAY73189.1| Type II secretion system protein outF [Erwinia pyrifoliae DSM
           12163]
          Length = 401

 Score = 51.3 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 50/179 (27%), Gaps = 20/179 (11%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   V A LP+  A+  +  Q++ P        I  +     L  +       +  
Sbjct: 67  MTRQLATLVGAALPLEQALLALERQTTKPAGRTMLHAIRQKV----LEGASLADAVGLYP 122

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G L   L  L+      + +K+K+    +       +  S+  
Sbjct: 123 ATFPPLYQAMIAAGEASGKLDNVLEQLADYSEKTQQIKSKLTQAMIYPLLLTLVAISVIT 182

Query: 139 CVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVMRL 181
            + T V  +       +                I    G  +L V      I  +++R 
Sbjct: 183 ILLTAVVPSVVEQFVHMKQALPLSTRLLMSISEITRAIGLPVLLVMLLAGFIARVMLRR 241


>gi|77456872|ref|YP_346377.1| type II secretion system protein [Pseudomonas fluorescens Pf0-1]
 gi|77380875|gb|ABA72388.1| putative type II secretion system protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 296

 Score = 51.3 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 61/147 (41%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +     +R  +   +    + ++     AG+ V  A+ V+  +       +  E R V+ 
Sbjct: 136 LAMAAGRRQKQLATEISTFIPLLRILFEAGMAVEQALRVLSHEGQTLLPVLTQELRLVLA 195

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL L E +++  R + + E +    ++    Q GG   ++L  L ++L DR+  + 
Sbjct: 196 RVDSGLELGEELNKATRLLAVDEFTDTCVILQQLLQQGGGAMKSLLALKQLLDDRRLTRL 255

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           +     M AK S  ++  L   +  ++
Sbjct: 256 QEYISKMSAKMSVVMMMFLFPALLIVL 282


>gi|317489280|ref|ZP_07947797.1| hypothetical protein HMPREF1023_01496 [Eggerthella sp. 1_3_56FAA]
 gi|316911681|gb|EFV33273.1| hypothetical protein HMPREF1023_01496 [Eggerthella sp. 1_3_56FAA]
          Length = 402

 Score = 51.3 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 59/183 (32%), Gaps = 21/183 (11%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSES 68
                +           + AG+P + A +++  Q +   ++     V      G SL+ES
Sbjct: 60  KAKQKNLAVMCAQFATILNAGVPAARATSLVADQVTDKYLKRVLADVAADVASGHSLAES 119

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                  +P               +  G+L E+   L      R  + AKVQ+       
Sbjct: 120 FQSKGENLP-----RVFIETVRAGEESGHLPESFQRLHGYFDKRAKVSAKVQSAMTYPIF 174

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH---------------MLLGVAAAFML 173
            A I   +   +  +V  +  G +  L  D                   +L+ V  A ++
Sbjct: 175 VAVIAVVVLAIMMVMVIPSMTGMIASLGADTPAMTQFLIDASNFVTDNFLLIAVVLALIV 234

Query: 174 IGI 176
           +G+
Sbjct: 235 VGV 237



 Score = 35.1 bits (79), Expect = 4.1,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 40/139 (28%), Gaps = 7/139 (5%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRY 75
               + +   V AGLP + AVA+     S+  +  E  R+      G +L E +      
Sbjct: 270 AQFANTMAMLVTAGLPATRAVAITSRVMSNYVLSREVGRLEAGLEEGRTLGEGLEA---- 325

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                +      +    +  G L E L  +     D            ME      +   
Sbjct: 326 --STYLPRTLVEMVAVGEHTGELEETLETMGAFYDDETQRVTNKAISIMEPALLVLMALF 383

Query: 136 LPFCVSTLVYFTSPGYMNV 154
             F V  L       Y  +
Sbjct: 384 AGFIVIALYLPMFSLYAAM 402


>gi|120612796|ref|YP_972474.1| type II secretion system protein [Acidovorax citrulli AAC00-1]
 gi|120591260|gb|ABM34700.1| type II secretion system protein [Acidovorax citrulli AAC00-1]
          Length = 427

 Score = 51.3 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 58/159 (36%), Gaps = 8/159 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +RAGL + +A+ V++       + +  + V++    G  LS ++++          
Sbjct: 97  LSIMLRAGLALDNALRVLIDMSHKPSMATLLQGVLDAVKGGTPLSRALAQHRDLFGD--- 153

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F   +    +  G +S  L  L   +  ++ ++  V + ++       +       + 
Sbjct: 154 --FYINMIRSGEASGQMSAVLERLVAHMERQRALRDSVISATIYPAILLGVAVLSLIAML 211

Query: 142 TLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMV 178
             V          + +       M++ +  AF   G+++
Sbjct: 212 GFVVPQFEKLFTDMGDALPLPTQMVMALGHAFTRYGLLI 250


>gi|256846649|ref|ZP_05552105.1| general secretion pathway protein F [Fusobacterium sp. 3_1_36A2]
 gi|294784358|ref|ZP_06749649.1| general secretion pathway protein F [Fusobacterium sp. 3_1_27]
 gi|256717869|gb|EEU31426.1| general secretion pathway protein F [Fusobacterium sp. 3_1_36A2]
 gi|294487930|gb|EFG35285.1| general secretion pathway protein F [Fusobacterium sp. 3_1_27]
          Length = 346

 Score = 51.3 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 66/170 (38%), Gaps = 13/170 (7%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGL 63
           +K +  K L       + +   +++GL  + A+ +I+ +  D    E  +++ +    G 
Sbjct: 1   MKNKKEKIL----FFTNELAIMLKSGLTFTTAIEIILKEEKDKNFKEVLKKIHKNLIAGK 56

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S+ ES     R             +    ++ G+++E L ++S+ L      + K+  + 
Sbjct: 57  SIFESFKNFDRIFGN-----TYLYMLKIGEVSGSIAERLEDISKSLEFDLANQKKLGGIL 111

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           +       +I      V+ L+ F  P ++ +   +     L+     F+ 
Sbjct: 112 VYPI---VVISLTFIIVTFLLTFILPDFITIFEENQVELPLITKILLFIS 158


>gi|159039934|ref|YP_001539187.1| type II secretion system protein [Salinispora arenicola CNS-205]
 gi|157918769|gb|ABW00197.1| type II secretion system protein [Salinispora arenicola CNS-205]
          Length = 255

 Score = 51.3 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 48/142 (33%), Gaps = 4/142 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P A D++   +RAG PV  +V  +      P+      V     LG   +E+ S +   
Sbjct: 117 LPLAADLLASVMRAGAPVDRSVLAVAEALDGPLAERLALVGRLLRLGAEPAEAWSTLAAV 176

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IG 134
                           +  G  L+ AL  L+  LR  +  + + +A          + + 
Sbjct: 177 ---PGAERLIAAALRSAASGATLAGALTRLADDLRADRATEVEAKARRSGVLIVLPLGLC 233

Query: 135 SLPFCVSTLVYFTSPGYMNVLI 156
            LP  +   +       +  ++
Sbjct: 234 FLPAFILAGLMPVIVAVLGDVL 255


>gi|296158799|ref|ZP_06841628.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
 gi|295891004|gb|EFG70793.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
          Length = 336

 Score = 51.3 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 61/157 (38%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           ++    KR    +D+ P  +D++      GL +  ++ V+V         +  E      
Sbjct: 173 LRRRAGKRRNGVVDELPLLVDLLRLLQGVGLSLDQSLQVVVNDFRGMLPVLAGELEIAQR 232

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S++R+      +++     ++    + GG + E L      LR+ +    
Sbjct: 233 QFAAGRTREQSLNRLATSYDNEDLRAVMRLLVQVDRHGGAVQEPLKQFGDRLRETRRAML 292

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           + +   +  K +  +I +L   +  ++    PG + V
Sbjct: 293 RERIGRLAVKMTGVMIVTLLPAL--MIVTAGPGVLAV 327


>gi|237786542|ref|YP_002907247.1| hypothetical protein ckrop_1996 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237759454|gb|ACR18704.1| hypothetical protein ckrop_1996 [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 216

 Score = 51.3 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 63/181 (34%), Gaps = 6/181 (3%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ------SSDPVRSEFRRVIETQHLG 62
             + +  +  A  +I   + AG     AV  +  +          V  E R ++      
Sbjct: 30  QRQVIAQWAQASSMIASELLAGASPLVAVRHVADEMDGADDMEGQVARELRTMVNHCAWL 89

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            +    +S              +    V  + G  L+E +   +  L+ + + + + +A 
Sbjct: 90  GAPCAPLSTWSSEPEQVGRQAIARAWLVSHRTGVPLAEVMQATAADLQAKLHHQERTEAS 149

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
               +AS  ++  LP     +      G ++ L+    G +LL V     ++G+   R +
Sbjct: 150 LAGPRASTRVLMFLPLVGVAMGQSMGAGSIHFLLTTQLGGLLLLVGVVLEVVGLEWSRAL 209

Query: 183 I 183
           +
Sbjct: 210 M 210


>gi|226325874|ref|ZP_03801392.1| hypothetical protein COPCOM_03687 [Coprococcus comes ATCC 27758]
 gi|225205998|gb|EEG88352.1| hypothetical protein COPCOM_03687 [Coprococcus comes ATCC 27758]
          Length = 141

 Score = 51.3 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 6/139 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRR 54
           ++   +K    F   F +AL  +   +  G  + +A+  +             +  EF  
Sbjct: 2   IRQAEEKGKRCFERQFQDALQSLEAQLNVGYSMENAIKEVQRDLQIMYDRHTLIVREFTY 61

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           ++   +L ++   +       + L EV  F TV S+  + GG+    + N  R L D+  
Sbjct: 62  MVRQLNLNVTAEAAWKDFAARVALPEVDTFVTVFSLAKRSGGDSILIIKNAVRQLGDKAE 121

Query: 115 MKAKVQALSMEAKASAWII 133
           +K ++  +    K +    
Sbjct: 122 VKREIDTVIAAKKWNFRSC 140


>gi|289449641|ref|YP_003475052.1| hypothetical protein HMPREF0868_0732 [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184188|gb|ADC90613.1| conserved hypothetical protein [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 545

 Score = 51.3 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 74/186 (39%), Gaps = 6/186 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA------VIVGQSSDPVRSEFRRVIE 57
           L  +R   +   F + L I+   +  G+  ++A        V++  + + +  +      
Sbjct: 62  LASRRARLYRLIFGHFLQIMSAELTGGMTFTNAFTGAIADLVLITGTRNRLMQQLCNASG 121

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                L  ++ +  +      +E      + S+Q +  GN++      + ++ D  + +A
Sbjct: 122 MLAAHLPAAQVLDELSNQSVCREAKPILKIFSLQLRNNGNMNNLCKFATTMVNDLNDTEA 181

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           ++ A S +    A+I+ ++P+ +S ++ F++  Y         G ++   +    +    
Sbjct: 182 QITADSNKQTVEAFIMAAMPYIMSAILQFSAGSYYAQASITTLGRVMKLASLFVAVTASA 241

Query: 178 VMRLMI 183
           +   ++
Sbjct: 242 LTFYIV 247



 Score = 35.9 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 51/149 (34%), Gaps = 5/149 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAV---IVGQSSDPVRSEFRRVIETQHLGLSLSES 68
            ++ FP    +I   + +G     A+ +   +    +D + +  R++      G +    
Sbjct: 399 LINKFPFFAGLINALLNSGFVPYRALEISINLYAGETDVLGNALRKINADMRRGENYCRG 458

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           +  + ++  + E+     +I+  +  G    +AL  L+        +         E   
Sbjct: 459 LVDLAKHSYVPEIQSALNLINQYAIQGNG--QALTLLAVQCNTCWQLSRNTMRKYREKST 516

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
              +I  +   +S ++   +P       +
Sbjct: 517 FKILIPMMLNLISIIILTVAPVIATFSFS 545


>gi|167845911|ref|ZP_02471419.1| type II secretion system protein [Burkholderia pseudomallei B7210]
          Length = 270

 Score = 50.9 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66
              +D+ P  +D++      GL +  ++ V+          + SE          G +  
Sbjct: 116 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 175

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+ R+      +++     ++    + GG + E L      LR+ +    + +   +  
Sbjct: 176 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 235

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           K +  +I +L   +   +    PG + V
Sbjct: 236 KMTGVMILTLLPALF--IVTAGPGMLAV 261


>gi|330873645|gb|EGH07794.1| hypothetical protein PSYMP_04415 [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330963434|gb|EGH63694.1| hypothetical protein PSYAC_02052 [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 294

 Score = 50.9 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 67/157 (42%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +    ++R  + + +    + ++     +G+ V  A+ V+  +       +  E R V+ 
Sbjct: 134 LAAAAQRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSDEIRVVLT 193

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL L E + +    + + E+S    +++     GG   ++L  L +++ DR+  + 
Sbjct: 194 RVDSGLELGEELRKTAALLAVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 253

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +     + AK S  ++  L   +  ++    PG++ +
Sbjct: 254 QEYISKLSAKMSVVMMVFLFPALLIVL--AGPGFIAI 288


>gi|282892148|ref|ZP_06300622.1| hypothetical protein pah_c209o016 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497949|gb|EFB40294.1| hypothetical protein pah_c209o016 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 392

 Score = 50.9 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 55/169 (32%), Gaps = 10/169 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
           DD       + + + AG+P+ +A+  I  Q  +    S    + +    G  LSE++   
Sbjct: 55  DDLLAFTFQLSQLLGAGVPLYEALIAIEEQYRNESFHSIILSLCDQIKAGTPLSEAMQNY 114

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    +     +    +  G L   L  LS +L  ++ ++ ++    +       +
Sbjct: 115 PDS-----FNRLYCSMVRAGESVGALDLVLEKLSLLLNKQQKLRKEITTAMIYPA---VL 166

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIN-DPRGHMLLGVAAAFMLIGIMVMR 180
                  +  L+ F  P    +  +    G     +A +        + 
Sbjct: 167 ACFALLVICLLLGFVVPSIEGIFADKQLNGFTQAVLAVSHFFRDYWWLY 215



 Score = 43.2 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 9/140 (6%), Positives = 34/140 (24%), Gaps = 5/140 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R              +      G+ + D++ +      +    E  +          + E
Sbjct: 250 RNLVIQAAVSRFCRTMATLQNGGVTMIDSLRIARETMRNATLEEEIK-----RAESKIIE 304

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
             S   + M  +      + +    +  G+    +  ++ +  D             +  
Sbjct: 305 GSSLSAQLMQSKYFPHMVSRMLAVGEDSGSSVIMMNKIADMYEDELEKTLSRVMALAQPV 364

Query: 128 ASAWIIGSLPFCVSTLVYFT 147
               +   +   +  ++   
Sbjct: 365 ILIVMGTVIGAVMMAVLLPL 384


>gi|326318814|ref|YP_004236486.1| Type II secretion system F domain-containing protein [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323375650|gb|ADX47919.1| Type II secretion system F domain protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 427

 Score = 50.9 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 65/178 (36%), Gaps = 25/178 (14%)

Query: 23  IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +RAGL + +A+ V++       +    + V++    G  LS ++S+          
Sbjct: 97  LSIMLRAGLALDNALRVLIDMSHKPSMAVLLQGVLDAVKGGTPLSRALSQHRDLFGD--- 153

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F   +    +  G +S  L  L   +  ++ ++  V + ++       ++G     + 
Sbjct: 154 --FYINMIRSGEASGQMSAVLERLVAHMERQRALRDSVISATIYPA---ILLGVAVLSLI 208

Query: 142 TLVYFTSPGYMNVLINDPRGHML----------------LGVAAAFMLIGIMVMRLMI 183
            ++ F  P +  +  +      L                L +  A + +G++V R + 
Sbjct: 209 AMLGFVVPQFEKLFTDMGDALPLPTQLVMALGHAFTRYGLLIGIAVLGLGLLVRRWVT 266


>gi|257789821|ref|YP_003180427.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|325832326|ref|ZP_08165325.1| type II secretion system protein F domain protein [Eggerthella sp.
           HGA1]
 gi|257473718|gb|ACV54038.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|325486162|gb|EGC88616.1| type II secretion system protein F domain protein [Eggerthella sp.
           HGA1]
          Length = 402

 Score = 50.9 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 59/183 (32%), Gaps = 21/183 (11%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSES 68
                +           + AG+P + A +++  Q +   ++     V      G SL+ES
Sbjct: 60  KAKQKNLAVMCAQFATILNAGVPAARATSLVADQVTDKYLKRVLADVAADVASGHSLAES 119

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                  +P               +  G+L E+   L      R  + AKVQ+       
Sbjct: 120 FQSKGENLP-----RVFIETVRAGEESGHLPESFQRLHGYFDKRAKVSAKVQSAVTYPIF 174

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH---------------MLLGVAAAFML 173
            A I   +   +  +V  +  G +  L  D                   +L+ V  A ++
Sbjct: 175 VAVIAVVVLAIMMVMVIPSMTGMIASLGADTPAMTQFLIDASNFVTDNFLLIAVVLALIV 234

Query: 174 IGI 176
           +G+
Sbjct: 235 VGV 237



 Score = 35.5 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 40/139 (28%), Gaps = 7/139 (5%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRY 75
               + +   V AGLP + AVA+     S+  +  E  R+      G +L E +      
Sbjct: 270 AQFANTMAMLVTAGLPATRAVAITSRVMSNYVLSREVGRLEAGLEEGRTLGEGLEA---- 325

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                +      +    +  G L E L  +     D            ME      +   
Sbjct: 326 --STYLPRTLVEMVTVGEHTGELEETLETMGAFYDDETQRVTNKAISIMEPALLVLMALF 383

Query: 136 LPFCVSTLVYFTSPGYMNV 154
             F V  L       Y  +
Sbjct: 384 AGFIVIALYLPMFSLYAAM 402


>gi|315125825|ref|YP_004067828.1| general secretion pathway protein F [Pseudoalteromonas sp. SM9913]
 gi|315014339|gb|ADT67677.1| general secretion pathway protein F [Pseudoalteromonas sp. SM9913]
          Length = 370

 Score = 50.9 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/172 (11%), Positives = 50/172 (29%), Gaps = 6/172 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   +++ LPV  AV  +  Q     ++     V      G +L++ +S 
Sbjct: 29  TSDLALITRQLATLIQSALPVEGAVMAVAEQCEKPRLKRMLMSVRSKVVEGYTLADGMSE 88

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                           +    +  G+L + L  L+     R++M++++    +       
Sbjct: 89  FP-----HVFDDLYRAMVAAGEKSGHLDQVLNRLADYTEQRQHMRSQITQAMVYPIILVV 143

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
               +   +   V                      +A +  +     + L+ 
Sbjct: 144 FAIGIVSVLLGTVVPKILKTFEKTKQVLPWTTEWVMAGSHFVQNYWFVSLLA 195


>gi|297627214|ref|YP_003688977.1| hypothetical protein PFREUD_20690 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922979|emb|CBL57561.1| Hypothetical membrane protein [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 247

 Score = 50.9 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 55/153 (35%), Gaps = 4/153 (2%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           + R    L   P  LD+I  +  AG P+  A   +   + +P  S  R V     +G S 
Sbjct: 98  RARREALLGQQPEVLDLIAAAQEAGSPLRRAAGEVAALAPEPSASVLREVDAHLRVGFSE 157

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           +E+   +            +  ++  ++ G  +++ +   +   R+        +A ++ 
Sbjct: 158 AEAWQSLADD---PVWGSTARDLARSARTGEAVADTIHLHATRTREAHRDHLNKKARTVA 214

Query: 126 AKAS-AWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
            K+    +   LP  +   V     G  +  + 
Sbjct: 215 VKSVGPMMACFLPAFILAGVVPIFVGIASRYLG 247


>gi|167570100|ref|ZP_02362974.1| hypothetical protein BoklC_09666 [Burkholderia oklahomensis C6786]
          Length = 261

 Score = 50.9 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66
              +D+ P  +D++      GL +  ++ V+          + SE          G +  
Sbjct: 107 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTRE 166

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+ R+      +++     ++    + GG + E L      LR+ +    + +   +  
Sbjct: 167 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 226

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           K +  +I +L   +   +    PG + V
Sbjct: 227 KMTGVMIVTLLPALF--IVTAGPGMLAV 252


>gi|284162413|ref|YP_003401036.1| type II secretion system protein [Archaeoglobus profundus DSM 5631]
 gi|284012410|gb|ADB58363.1| type II secretion system protein [Archaeoglobus profundus DSM 5631]
          Length = 628

 Score = 50.9 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/167 (10%), Positives = 55/167 (32%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  + ++   K  +  P+    +     AGL V + + V+       +  E   +     
Sbjct: 409 LVEIKERVMRKTEERIPDVFSELAMLNEAGLTVLEGLRVLSQTEMGLLTREIAVMRREIE 468

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  +  R+   +    +S    V+    +    + +A   ++R        K +++
Sbjct: 469 WGVLIPRAFIRLGIRVKSDILSKIVPVVVKALETAPTIKDAFNVVARYADTEVAFKKRMR 528

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
           + ++      ++   +    + ++  +       L     G   L  
Sbjct: 529 SSTLLYVIIIYMCIVVFLTTTYMIITSFFKPFVGLSGVSVGGYALSF 575



 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 67/186 (36%), Gaps = 7/186 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQH 60
            L K+R  +     P+A+ ++      G+P+ + +  +         +  EF  ++E   
Sbjct: 127 FLAKRRRNEIELYLPHAISMMYSMATGGIPIHNMIRTVAESKHIFGELSREFMIIVEMVD 186

Query: 61  LGLSLSESISRMVRY-MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           +         R VR   P  ++S F   +    + GG LSE L   S  L + +    + 
Sbjct: 187 VFKRNIYDGMRFVRDTTPSPQLSSFLDNMIFILEGGGRLSEFLRRKSEELSEERERTFES 246

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
               +   A  +I   +   +  L+  +    +  ++  P     + +     +   M M
Sbjct: 247 FIELLGMMAEVYIALFVVLPLFLLIVLS----VTRILGTPFEIYRIILIVTLPVATFMFM 302

Query: 180 RLMINF 185
            ++ + 
Sbjct: 303 YIIRSI 308


>gi|167824379|ref|ZP_02455850.1| type II secretion system protein [Burkholderia pseudomallei 9]
          Length = 266

 Score = 50.9 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66
              +D+ P  +D++      GL +  ++ V+          + SE          G +  
Sbjct: 112 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 171

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+ R+      +++     ++    + GG + E L      LR+ +    + +   +  
Sbjct: 172 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 231

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           K +  +I +L   +   +    PG + V
Sbjct: 232 KMTGVMILTLLPALF--IVTAGPGMLAV 257


>gi|312880041|ref|ZP_07739841.1| Type II secretion system F domain [Aminomonas paucivorans DSM
           12260]
 gi|310783332|gb|EFQ23730.1| Type II secretion system F domain [Aminomonas paucivorans DSM
           12260]
          Length = 407

 Score = 50.9 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 59/172 (34%), Gaps = 14/172 (8%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLS 66
           R          A   +   V AG+ V+ A+ ++  Q  +  + + F RV +    G SL 
Sbjct: 65  RIRLKDKAL--AFRQMSTMVAAGITVAGALNILEDQIQNKALAAAFTRVGKGVAAGFSLG 122

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            S+ R   + P          +    + GG L  +L  LS  L  ++ ++ KV +     
Sbjct: 123 TSLRREAAFSP------LMVALIQAGEEGGVLDLSLQRLSDFLEKQEALRRKVLSAVTYP 176

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                +   +   +  +V        + L     G  L  V  A     + +
Sbjct: 177 LVVLLVCALVMVLLVFVVIPKFSAVFSHL-----GVPLPWVTRAMFGSALWL 223



 Score = 43.2 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/140 (8%), Positives = 40/140 (28%), Gaps = 5/140 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
              +       V +G+P+   + +    + +   +     +           ++++  + 
Sbjct: 273 LARSFRTFGTLVASGVPLLQCLEMSSQVADNHHVARSYLTLRDAAEKGVPLHAVAKKNKL 332

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +  G L E L  ++         K K     +E     ++ G 
Sbjct: 333 FPP-----MVCHMMAIGEETGKLEEMLGKIADWYEMELEEKVKQLTSILEPVLILFVGGV 387

Query: 136 LPFCVSTLVYFTSPGYMNVL 155
           +      +    +    +++
Sbjct: 388 VALVALAIFLPITQAIQSMM 407


>gi|238563945|ref|ZP_00437984.2| type II secretion system protein [Burkholderia mallei GB8 horse 4]
 gi|238519622|gb|EEP83092.1| type II secretion system protein [Burkholderia mallei GB8 horse 4]
          Length = 268

 Score = 50.9 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66
              +D+ P  +D++      GL +  ++ V+          + SE          G +  
Sbjct: 114 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 173

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+ R+      +++     ++    + GG + E L      LR+ +    + +   +  
Sbjct: 174 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 233

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           K +  +I +L   +   +    PG + V
Sbjct: 234 KMTGVMILTLLPALF--IVTAGPGMLAV 259


>gi|167902893|ref|ZP_02490098.1| type II secretion system protein [Burkholderia pseudomallei NCTC
           13177]
          Length = 264

 Score = 50.9 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66
              +D+ P  +D++      GL +  ++ V+          + SE          G +  
Sbjct: 110 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 169

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+ R+      +++     ++    + GG + E L      LR+ +    + +   +  
Sbjct: 170 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 229

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           K +  +I +L   +   +    PG + V
Sbjct: 230 KMTGVMILTLLPALF--IVTAGPGMLAV 255


>gi|313683366|ref|YP_004061104.1| type ii secretion system f domain [Sulfuricurvum kujiense DSM
           16994]
 gi|313156226|gb|ADR34904.1| Type II secretion system F domain [Sulfuricurvum kujiense DSM
           16994]
          Length = 412

 Score = 50.9 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 57/154 (37%), Gaps = 9/154 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            LD +   + AG+P++  +A  V  +    + + F  V+     G SLS ++S+    + 
Sbjct: 77  FLDQLSVMLDAGMPINICLADTVDNTEDPMLHAIFSEVLSNIESGQSLSFALSKYQTQLG 136

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +  +    +  G L+ A+A LS I +   N +  ++  +       +II ++ 
Sbjct: 137 K-----LTLSMFELGEQTGTLNIAIAKLSTIFQQIHNNRQMLKKATRYPL---FIIIAMS 188

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
                ++ F  P +                   +
Sbjct: 189 IAFIIVITFIVPQFQTFFEQSGLELPFPTKILLW 222


>gi|330443955|ref|YP_004376941.1| general secretion pathway protein F [Chlamydophila pecorum E58]
 gi|328807065|gb|AEB41238.1| general secretion pathway protein F [Chlamydophila pecorum E58]
          Length = 391

 Score = 50.9 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 45/146 (30%), Gaps = 4/146 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R      +       +   +R+GLP+ +++A +  Q      +     + +  + +  S 
Sbjct: 49  RIRIKNTELIVLTKQLALLLRSGLPLYESLASLRDQYQGQGIA----TLLSSFMDVLRSG 104

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
                   +  +    F     +  +  G L E L N+  +L +R ++  K+ A      
Sbjct: 105 GALSEAMAVHPEIFDNFYCSAVIAGENVGALEECLNNVVTVLEERAHISKKLLAALSYPL 164

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMN 153
                   +       V  +      
Sbjct: 165 ILLSFSIMVILFFLLGVIPSLRESFE 190


>gi|167816004|ref|ZP_02447684.1| type II secretion system protein [Burkholderia pseudomallei 91]
          Length = 272

 Score = 50.9 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66
              +D+ P  +D++      GL +  ++ V+          + SE          G +  
Sbjct: 118 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 177

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+ R+      +++     ++    + GG + E L      LR+ +    + +   +  
Sbjct: 178 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 237

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           K +  +I +L   +   +    PG + V
Sbjct: 238 KMTGVMILTLLPALF--IVTAGPGMLAV 263


>gi|26990137|ref|NP_745562.1| type II secretion system protein [Pseudomonas putida KT2440]
 gi|24985071|gb|AAN69026.1|AE016534_9 type II secretion pathway protein XcpS [Pseudomonas putida KT2440]
          Length = 403

 Score = 50.9 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 65/179 (36%), Gaps = 13/179 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           ++ +  +R A F  D       +   + AGLP+ DA+  +  +S     R     ++   
Sbjct: 54  LRGMAWRREAAF--DLVLFSQELSTLLNAGLPLIDALESLAEKSPAATARKVLAELVRQL 111

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           + G SLS+++ +  R  P          +   S+  G L +AL       +    ++ K+
Sbjct: 112 YEGRSLSQALGQQPRVFPP-----LYVALVQSSERTGALGDALTRYISYRQRLDLVRQKL 166

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
              S+       + G +   +   V          +     G  L  ++   M +G+ +
Sbjct: 167 VGASVYPLLLLLVGGGVVLFLLGYVVPRFSQVFEGM-----GTELPWLSRVLMQVGLFL 220


>gi|298253207|ref|ZP_06976999.1| Flp pilus assembly protein TadB [Gardnerella vaginalis 5-1]
 gi|297532602|gb|EFH71488.1| Flp pilus assembly protein TadB [Gardnerella vaginalis 5-1]
          Length = 191

 Score = 50.9 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 59/181 (32%), Gaps = 13/181 (7%)

Query: 15  DFPNALDIIVRSVRAGLPVS----------DAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           D    L  ++ ++R+G   +            +      +    +  + R         +
Sbjct: 2   DIEEVLAGMIAALRSGSTFAMIVHSDSKSQQCICSSAVNTKIIYKWLYERCFPKNR---N 58

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           ++++  R +                + + LG  ++E +   +     +K  +     ++ 
Sbjct: 59  MNKNQRRQLEKHMHTVSESLMASYELSNTLGCAMAECVEATAASYHAQKRAEDLRADVAA 118

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
             KA+  ++ +LP              + +LI    G +LL +      +G+  +  M+ 
Sbjct: 119 MPKATIKLLTALPILALFAGELLGGHPILMLITTVNGWILLTIGGICYGLGLAWVSSMLQ 178

Query: 185 F 185
            
Sbjct: 179 I 179


>gi|167719782|ref|ZP_02403018.1| type II secretion system protein [Burkholderia pseudomallei DM98]
          Length = 273

 Score = 50.9 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66
              +D+ P  +D++      GL +  ++ V+          + SE          G +  
Sbjct: 119 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 178

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+ R+      +++     ++    + GG + E L      LR+ +    + +   +  
Sbjct: 179 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 238

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           K +  +I +L   +   +    PG + V
Sbjct: 239 KMTGVMILTLLPALF--IVTAGPGMLAV 264


>gi|168069635|ref|XP_001786522.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162661100|gb|EDQ48667.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 200

 Score = 50.9 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 8/159 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP----VRSEFRRVI 56
           +   + KR      +    L+ IV  V AG  V  A+     Q        +  E  R+I
Sbjct: 43  LHTKVDKRDQDITIELAELLNKIVLLVGAGETVQKAITRCARQKEAQRDHPLYKELIRMI 102

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNM 115
           +    G S  +S     +   +QEVS F+T + +   + G + + AL +LSR L +++  
Sbjct: 103 DDLEGGYSFQQSFENFSKRCAVQEVSAFTTAVLLNLRRGGSDFAMALNDLSRGLWEKRKA 162

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
             + +     +K    +   +   +  +V   +P +M +
Sbjct: 163 ITRTRGEQASSKL---VFPMMVIFMIVIVLVGTPAFMMM 198


>gi|297568749|ref|YP_003690093.1| Type II secretion system F domain protein [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924664|gb|ADH85474.1| Type II secretion system F domain protein [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 305

 Score = 50.9 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 56/143 (39%), Gaps = 5/143 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           + P    ++   + AGL +  A+  +     +       E   V+     G     ++  
Sbjct: 157 EVPMLAQLLRVLIEAGLGLDQALLTVATDNREIIPACSQELSVVMRQVEQGAERGTTLLA 216

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M R + +QE+     ++    + GGN+ + L     +L DR+ +K + +   +    +  
Sbjct: 217 MARTLDVQELQDLCEMLRQVYRYGGNVRDPLREFVALLYDRRRIKLQERVGKLAGSMTII 276

Query: 132 IIGSLPFCVSTLVYFTSPGYMNV 154
           +I      +  +V    PG++ +
Sbjct: 277 VIIFFFPALLAVV--AGPGFIAI 297


>gi|167894486|ref|ZP_02481888.1| type II secretion system protein [Burkholderia pseudomallei 7894]
          Length = 269

 Score = 50.9 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66
              +D+ P  +D++      GL +  ++ V+          + SE          G +  
Sbjct: 115 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 174

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+ R+      +++     ++    + GG + E L      LR+ +    + +   +  
Sbjct: 175 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 234

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           K +  +I +L   +   +    PG + V
Sbjct: 235 KMTGVMILTLLPALF--IVTAGPGMLAV 260


>gi|327478759|gb|AEA82069.1| general secretion pathway protein F [Pseudomonas stutzeri DSM 4166]
          Length = 404

 Score = 50.9 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 49/167 (29%), Gaps = 6/167 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   V+A LP+ +A+       +S  ++S    V      G SL+ ++   
Sbjct: 65  RDLALVTRQLATLVQAALPIEEALRAAAAQSTSAKIKSMLLAVRARVMEGHSLAAALREY 124

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P               +  G+L   L  L+     R+  + K+Q   +        
Sbjct: 125 PSAFP-----ELYRATVAAGEHAGHLGLVLDQLADYTDQRQQSRQKIQLALLYPVILMVA 179

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             ++   +   V             +        +A + ++     +
Sbjct: 180 SLAIVVLLLGYVVPDVVKVFVNTGQELPALTRGLIATSDVVKNWGWL 226



 Score = 38.2 bits (87), Expect = 0.48,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 44/130 (33%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +    R+G+P+ +A+++     ++    E      +    G SL+ ++     + P
Sbjct: 273 FASTLAILTRSGVPLVEALSIAAAVIANLRIRERVVEAAQKVREGSSLTRALDATGEFPP 332

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         +    +  G L + LA  +R   +    +  +     E     ++   + 
Sbjct: 333 M------MLHMIASGEKSGELDQMLARTARNQENDLAAQVSLLVGLFEPFMLVFMGAVVL 386

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 387 VIVLAILMPI 396


>gi|326403163|ref|YP_004283244.1| type II secretion system protein [Acidiphilium multivorum AIU301]
 gi|325050024|dbj|BAJ80362.1| type II secretion system protein [Acidiphilium multivorum AIU301]
          Length = 406

 Score = 50.9 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 57/163 (34%), Gaps = 11/163 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
           D   +    +   + AGL +  A+    G  ++  VR+    + +    G +L  ++   
Sbjct: 67  DALADFTRELAAMLGAGLDLERALRFAAGTAATPRVRAIILAICDKVRDGAALWRALGHE 126

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P      F   +    +  G L+  L +L+ +L   ++++A + A        A  
Sbjct: 127 PHSFPP-----FYVGLVRAGEESGALAATLEDLAELLERNRSLRAAMIAGLTYPALLALA 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
                  +  L+    P ++ +   +  G  L       + IG
Sbjct: 182 ATG---AIVFLLTNVLPEFVPIFAEN--GVPLPATTRLLLTIG 219


>gi|313892219|ref|ZP_07825812.1| type II secretion system protein F domain protein [Dialister
           microaerophilus UPII 345-E]
 gi|313119357|gb|EFR42556.1| type II secretion system protein F domain protein [Dialister
           microaerophilus UPII 345-E]
          Length = 392

 Score = 50.9 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 48/152 (31%), Gaps = 6/152 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            ++KR  K               + +GL V + + ++     +      R++  +   G 
Sbjct: 50  KLEKRVFKNYKTLYIFASEWASLIESGLSVIETLDILEMNRKEKEIKVIRKIKNSITSGF 109

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S+SES+ +        E   F   +    +  G L   L   +   +    M+ K+  L 
Sbjct: 110 SISESLEKTS------EFPSFFISMVKIGEATGTLPLQLETAADYYKKEHKMRKKLTELF 163

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                       + + + TLV          +
Sbjct: 164 AYPVTVLIFSLIVLYVIMTLVIPVFYELYQSM 195


>gi|146280522|ref|YP_001170675.1| general secretion pathway protein F [Pseudomonas stutzeri A1501]
 gi|145568727|gb|ABP77833.1| general secretion pathway protein F [Pseudomonas stutzeri A1501]
          Length = 404

 Score = 50.9 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 49/167 (29%), Gaps = 6/167 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   V+A LP+ +A+       +S  ++S    V      G SL+ ++   
Sbjct: 65  RDLALVTRQLATLVQAALPIEEALRAAAAQSTSAKIKSMLLAVRARVMEGHSLAAALREY 124

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P               +  G+L   L  L+     R+  + K+Q   +        
Sbjct: 125 PSAFP-----ELYRATVAAGEHAGHLGLVLDQLADYTDQRQQSRQKIQLALLYPVILMVA 179

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             ++   +   V             +        +A + ++     +
Sbjct: 180 SLAIVVLLLGYVVPDVVKVFVNTGQELPALTRGLIATSDVVKNWGWL 226



 Score = 38.2 bits (87), Expect = 0.48,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 44/130 (33%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +    R+G+P+ +A+++     ++    E      +    G SL+ ++     + P
Sbjct: 273 FASTLAILTRSGVPLVEALSIAAAVIANLRIRERVVEAAQKVREGSSLTRALDATGEFPP 332

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         +    +  G L + LA  +R   +    +  +     E     ++   + 
Sbjct: 333 M------MLHMIASGEKSGELDQMLARTARNQENDLAAQVSLLVGLFEPFMLVFMGAVVL 386

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 387 VIVLAILMPI 396


>gi|119503099|ref|ZP_01625184.1| general secretion pathway protein F [marine gamma proteobacterium
           HTCC2080]
 gi|119461445|gb|EAW42535.1| general secretion pathway protein F [marine gamma proteobacterium
           HTCC2080]
          Length = 396

 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 51/155 (32%), Gaps = 6/155 (3%)

Query: 23  IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +RAGLP+  A+ V++       +R+    +++    G SLS ++            
Sbjct: 66  LSVLLRAGLPLDRALKVLIDMDGQPRMRAVLADLLKAVKGGKSLSLALQPYDEIFGP--- 122

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F   +    +  G LS  L  L   L   K  +  + +  +       +       + 
Sbjct: 123 --FYLSMVRAGEASGQLSAVLERLVEHLESAKATRDSIVSALIYPAILLVVAVISVVVML 180

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
             V        N + +   G     +AAA  +   
Sbjct: 181 GFVVPQFETLFNDMGDALPGMTKAVIAAAEFIKAW 215


>gi|74316564|ref|YP_314304.1| type IV pilus assembly protein PilC [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056059|gb|AAZ96499.1| type IV pilus assembly protein PilC [Thiobacillus denitrificans
           ATCC 25259]
          Length = 401

 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 58/179 (32%), Gaps = 6/179 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLS 66
           R      D       +    RAG+P+ + +  +         R     ++E    G  LS
Sbjct: 54  RDRVTRRDLVTFCIHMRYITRAGIPLLEGLRDLRDSMDKRGFRDVLTALLEDLEGGKVLS 113

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++++                      +  G L      L+  L+ ++ + AK + L +  
Sbjct: 114 QALAAHPAVFG-----AVFVHSVKAGEQTGLLDAVFERLAESLKWQEEVAAKARRLMIYP 168

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
                ++G+    +   +       +  +        L+ +A +  +    ++ L++ F
Sbjct: 169 LLVLAVVGAAILFLLIYLVPQVLTLVETMGVVLPLPTLILMAVSEAVRSYWLIGLLLAF 227


>gi|83859121|ref|ZP_00952642.1| type II secretion system protein F [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852568|gb|EAP90421.1| type II secretion system protein F [Oceanicaulis alexandrii
           HTCC2633]
          Length = 411

 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 53/159 (33%), Gaps = 6/159 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
            DD       +   + AG+PV +AV ++ GQ+    V      V E    G  LS++++ 
Sbjct: 70  EDDLTGVTRQLATLIDAGMPVEEAVGLVGGQADKAQVGRVLMGVREKVTEGERLSDAMAL 129

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P          +    +  G L + L  L+  L     +K +V A  +       
Sbjct: 130 YPDSFPG-----VYRAMVAAGESAGGLGQVLERLADYLEKAGALKRRVGAALIYPSVLGV 184

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           +   +   +   +        + +         + +A +
Sbjct: 185 VALLVVCVLLVAIVPKIAEQFDTMNMTLPLITRVMIALS 223



 Score = 37.4 bits (85), Expect = 0.94,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMVRYMP 77
               +   + AG  + +A+      S +         VIE    G  L++++ +      
Sbjct: 279 FARTMAILINAGAVLPEALRAARRASDNLPFQAMLGEVIEQVETGKGLADALRQA----- 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +        +    +  G L+E     +  +    +    V    +E      +   + 
Sbjct: 334 -RWFPPLMVYMVAAGERSGRLAEMFQRSAEHMEAEVDGAITVGLSLLEPGIIIAMAVIVV 392

Query: 138 FCVSTLVYFT 147
             V +++   
Sbjct: 393 GIVLSILLPI 402


>gi|317050497|ref|YP_004111613.1| type II secretion system F domain-containing protein
           [Desulfurispirillum indicum S5]
 gi|316945581|gb|ADU65057.1| Type II secretion system F domain protein [Desulfurispirillum
           indicum S5]
          Length = 401

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 52/167 (31%), Gaps = 12/167 (7%)

Query: 5   IKKRTAKFLDDFP-----NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
             +RT       P       L  +   +  G+ ++ A++++      P    +  ++   
Sbjct: 49  AGRRTPLLPRVLPATERIFFLHQLSALLGCGISLATALSMLATSMESPT---WHTILTRM 105

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
              LS  +S S   R             +    +L G L E L   + I+  ++  + ++
Sbjct: 106 EQDLSRGQSASNTFRSHRYAFGD-LLPFLVEVGELSGRLEEMLLRAASIMESQREFRKRL 164

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
                       ++ SL       V    P + ++         LL 
Sbjct: 165 GDALRYPL---IVLTSLLGAFVFAVTMIIPRFADIFARSEATLPLLT 208



 Score = 40.5 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/125 (8%), Positives = 40/125 (32%), Gaps = 5/125 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   ++ G+P++ A+ ++   +++P+  +  ++        +   +              
Sbjct: 276 LKTMLQGGIPLAAAMEMVRDTTANPLLRQELQLAHELLNQGAPFHAALEA-----CTIFP 330

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
             +  ++   + GG L + L   +     +   K +  A   E          +      
Sbjct: 331 GLAVQMARTGEEGGTLEQMLEKTATFYEQQAQQKLRTLAGYTEPLLLLLSGVFVLILALG 390

Query: 143 LVYFT 147
           ++   
Sbjct: 391 ILLPM 395


>gi|115524668|ref|YP_781579.1| type II secretion system protein [Rhodopseudomonas palustris
           BisA53]
 gi|115518615|gb|ABJ06599.1| type II secretion system protein [Rhodopseudomonas palustris
           BisA53]
          Length = 400

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 52/147 (35%), Gaps = 8/147 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                  L  +   +R+GLP+ +A+ V     S  +     ++      G +L +++ R 
Sbjct: 62  QRAITAFLGELSLVLRSGLPLDEALDVTGRDLSPRLAGTATQLRHDIVAGSTLVQALGR- 120

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    S     ++  +++ G+L   LA ++        +  KVQ          ++
Sbjct: 121 ----HKDVFSDDIIAMTRVAEVTGDLDGVLAAIAGERERGHRLNEKVQGALRYPA---FL 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDP 159
           I S    +   +    P + N+  +  
Sbjct: 174 ISSAVLVLLFFLVQVIPQFSNLFNDSG 200


>gi|167919153|ref|ZP_02506244.1| type II secretion system protein [Burkholderia pseudomallei BCC215]
          Length = 274

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66
              +D+ P  +D++      GL +  ++ V+          + SE          G +  
Sbjct: 120 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 179

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+ R+      +++     ++    + GG + E L      LR+ +    + +   +  
Sbjct: 180 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 239

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           K +  +I +L   +   +    PG + V
Sbjct: 240 KMTGVMILTLLPALF--IVTAGPGMLAV 265


>gi|296328361|ref|ZP_06870888.1| general secretion pathway protein F [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154540|gb|EFG95330.1| general secretion pathway protein F [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 346

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 66/170 (38%), Gaps = 13/170 (7%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGL 63
           +K +  K L       + +   +++GL  + A+ +I+ +  +    E  +++ +    G 
Sbjct: 1   MKNKKEKIL----FFTNELAIMLKSGLTFTTAIEIILREEKEKNFKEVLKKIHKNLIAGK 56

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S+ ES     +             +    ++ G+++E L ++S+ L      + K+  + 
Sbjct: 57  SIFESFKNFDKIFGN-----TYLYMLKIGEVSGSIAERLEDISKSLEFDLANQKKLGGIL 111

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           +       +I      V+ L+ F  P ++ +   +     L+     F+ 
Sbjct: 112 VYPI---VVISLTLIIVTFLLTFILPNFITIFEENQVELPLITRILLFIS 158


>gi|261402163|ref|YP_003246387.1| Type II secretion system F domain protein [Methanocaldococcus
           vulcanius M7]
 gi|261369156|gb|ACX71905.1| Type II secretion system F domain protein [Methanocaldococcus
           vulcanius M7]
          Length = 301

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 72/155 (46%), Gaps = 1/155 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH-LG 62
           L + +     ++ P AL I++ ++ +G  +++A+  +V  +   V + F++V+       
Sbjct: 77  LYENKMETLENNIPQALYIMILTLESGRSINEALEEVVKNNIKEVSNVFKKVLYLMEKQK 136

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +S  E+++ +      + +   + ++    + GGNL+++L  L++ L D +  K ++ ++
Sbjct: 137 ISFEEAMTIVSNLYDSKVLKMLARIMIENRKYGGNLADSLRVLAKTLEDFRLYKRQLLSV 196

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           +    A  +II          +       ++ ++ 
Sbjct: 197 TASGLAVGFIILCGVIPAVAALLGAYLITISKMMG 231


>gi|260905508|ref|ZP_05913830.1| hypothetical protein BlinB_09270 [Brevibacterium linens BL2]
          Length = 225

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 61/167 (36%), Gaps = 4/167 (2%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           A++     ++ G+     +A +  Q +  +    R +   +  G +++   + +      
Sbjct: 59  AVENCAHLLKVGMTPQAVMATLSRQ-NAQLAPISRAISLGEEPGRAIATRGAELP-GAAA 116

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +  +  S+V +V  + G   ++ +   +R  R   +   +        KA+  ++  LP 
Sbjct: 117 EVFAGMSSVWTVSERSGAPAADMILRYARAQRSALDADRERHIAMAGPKATVRVLSWLPL 176

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM-RLMIN 184
               L           L +   G + +G      L+G   M R+M+ 
Sbjct: 177 IGVGLGLLIGVKPAE-LFSGLPGQLSIGGGIVLYLLGRWWMRRMMVR 222


>gi|315649137|ref|ZP_07902228.1| Type II secretion system F domain protein [Paenibacillus vortex
           V453]
 gi|315275453|gb|EFU38810.1| Type II secretion system F domain protein [Paenibacillus vortex
           V453]
          Length = 290

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 69/151 (45%), Gaps = 7/151 (4%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIETQHLGLS 64
           R  + + + P  L+ IV  V AG  V  AV   V      + P+ +E +R++     G  
Sbjct: 141 REQEIIMELPELLNKIVLLVGAGETVQRAVIHCVERNKDMNHPLYAELKRMVLEWEGGHP 200

Query: 65  LSESISRMVRYMPLQEVS-FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
             ++  +  +   +QEVS F +TV+    + G +   AL +LSR+L +++    + +   
Sbjct: 201 FQQAFEQFNKRCGVQEVSIFTTTVLLNFRRGGNDFVMALRDLSRVLWEKRKAIGRTRGEQ 260

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
             +K    ++  +   +  +V   +P +M +
Sbjct: 261 ASSKL---VLPMVVIFMIVIVLLGAPAFMMM 288


>gi|296436104|gb|ADH18278.1| general secretion pathway protein F [Chlamydia trachomatis G/9768]
 gi|296437964|gb|ADH20125.1| general secretion pathway protein F [Chlamydia trachomatis G/11074]
 gi|297140465|gb|ADH97223.1| general secretion pathway protein F [Chlamydia trachomatis G/9301]
          Length = 391

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/193 (12%), Positives = 59/193 (30%), Gaps = 15/193 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           ++ + ++       +       +V  +R+G+ + DA+  +  Q     +      ++E  
Sbjct: 42  IRKVRERNYRVTTTELVIFTKQLVLLLRSGISLYDALTSLRDQYQGRALAGVLTSLMEAL 101

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G   SE+++R            F        +  GNL  AL N+ ++L +++ +   +
Sbjct: 102 RSGGVFSEALARFP-----HIFDSFYQNSVRSGESIGNLEGALMNIIKVLEEKEKLSKSL 156

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG---------VAAA 170
            A             ++       V  T       +        +               
Sbjct: 157 AAALSYPAILLVFSCAVVVFFLIGVIPTLKETFEDIEMTRLTKAVFSCSTWFCRYKFLVL 216

Query: 171 FMLIGIMVMRLMI 183
              IG  +   ++
Sbjct: 217 LGGIGGAISLRIV 229


>gi|258650977|ref|YP_003200133.1| Flp pilus assembly protein TadB-like protein [Nakamurella
           multipartita DSM 44233]
 gi|258554202|gb|ACV77144.1| Flp pilus assembly protein TadB-like protein [Nakamurella
           multipartita DSM 44233]
          Length = 270

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 47/124 (37%)

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
              +  S + +      P   ++F S+   +  + G      +  ++  L D+       
Sbjct: 145 MRTVDESPARAARSPDDPAGVLAFLSSGWLLSRRHGVAFGRVVTAVADELSDQLAADQTR 204

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            A     + S +++ +LP     L        + VL+  P G++LL +  A +  G++  
Sbjct: 205 TAQLAGPRMSGYVMAALPLMGVVLGAGMGVDPVAVLLGSPLGNLLLVIGVALLCAGLLWS 264

Query: 180 RLMI 183
             ++
Sbjct: 265 ARIV 268


>gi|167582055|ref|ZP_02374929.1| hypothetical protein BthaT_28187 [Burkholderia thailandensis TXDOH]
          Length = 278

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66
              +D+ P  +D++      GL +  ++ V+          + SE          G +  
Sbjct: 124 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTRE 183

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+ R+      +++     ++    + GG + E L      LR+ +    + +   +  
Sbjct: 184 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 243

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           K +  +I +L   +   +    PG + V
Sbjct: 244 KMTGVMILTLLPALF--IVTAGPGMLAV 269


>gi|116694144|ref|YP_728355.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
 gi|113528643|emb|CAJ94990.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
          Length = 345

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 65/147 (44%), Gaps = 5/147 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR---SEFRRVIETQHLGLSLSES 68
             D+ P  +D++      GL +  ++ VIV +    +R    E  R  +    G S  ++
Sbjct: 191 VDDELPVLIDMLRLLQGVGLSIDQSLQVIVAEFGSMLRVLGPELARANQQFASGRSREQT 250

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           + R+ R    +++    T+++   + GG + E L      +++ +  + K +   +  K 
Sbjct: 251 LLRIGRLFDSEDLKSLITLLTQVDKHGGAVQEPLRQFGLRMQEARKSRLKDEIGRLTVKM 310

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +A ++ SL   +  L     PG++ V+
Sbjct: 311 TAVMVVSLLPVLLIL--TAGPGFLGVI 335


>gi|116619189|ref|YP_821345.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222351|gb|ABJ81060.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 402

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 7/151 (4%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
              V  +RAGLP+  A+ ++  + +   +    + V +    G  LS++           
Sbjct: 71  QQFVTLIRAGLPILKALDLLAERLTDPKLGPYVKSVRDEVRNGSLLSDAFRLQG------ 124

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                     +  +  G+L+E L       +    +K KV    M       ++  L   
Sbjct: 125 IFPKMYVTSVMAGEKSGSLTEVLDRYVTYQKMSLAVKKKVMVSLMYPAVLIVLVALLMVF 184

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           + T V  T     N +        +  +A  
Sbjct: 185 LVTYVVPTFANLYNSMQAKLPMMTVYLIAIG 215



 Score = 41.3 bits (95), Expect = 0.066,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 42/135 (31%), Gaps = 7/135 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
                  I+   +  G+P+  A+       +   ++       +    G  LS S+S+  
Sbjct: 267 QVAQLARILSTLLVGGIPLVQAMETAADSLNTPLLKRAVDAAGKNVREGQPLSGSLSQSK 326

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
            + P       +  +    +  G L   L +++    +  N K       +E      + 
Sbjct: 327 LFPP------LAIDMIEVGESTGALPSMLNSVAEFFEEDVNTKMAATLSLIEPAIMIVMG 380

Query: 134 GSLPFCVSTLVYFTS 148
           G + F +  L     
Sbjct: 381 GVVAFVLIALYLPIF 395


>gi|167817508|ref|ZP_02449188.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei
           91]
          Length = 247

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 42/153 (27%), Gaps = 6/153 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AGL ++ ++ ++   +    +      +      G   S ++ R  R   
Sbjct: 53  FARQLAGLLHAGLALAPSLELLAQATQRSEMPRVAAGLAREIVAGRQFSAALRRYPRQFD 112

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                 F   +    +  G L+  L  L+          A+V+       A      ++ 
Sbjct: 113 P-----FFCQLVAVGETAGALAAVLTRLADDRERAAAQYARVKGALAYPAAVLLFALAIT 167

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             +   V  T                   +A +
Sbjct: 168 AALLVWVVPTFEQIFAGFGAPLPAPTRFVLALS 200


>gi|226325183|ref|ZP_03800701.1| hypothetical protein COPCOM_02975 [Coprococcus comes ATCC 27758]
 gi|225206531|gb|EEG88885.1| hypothetical protein COPCOM_02975 [Coprococcus comes ATCC 27758]
          Length = 303

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 65/159 (40%), Gaps = 2/159 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQ 59
           + H  K R  +     P AL+++  SV AG+ V      +    +  P+  EF R     
Sbjct: 143 LSHAGKTRGEEIDRYLPPALELLTISVSAGVLVERGFRQLAENKALGPLADEFARTDMEI 202

Query: 60  -HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            HLG+S  +++  M R      + +F   +   ++ G ++S  L + +++ R  +     
Sbjct: 203 SHLGVSRVDALDHMRRRCDSPLMGYFCAALIEATRKGTSISGVLESQAKLARKARYDALT 262

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
            Q   +  K +  ++  L   +  ++        ++L+ 
Sbjct: 263 AQINKLSTKMAVPLVFFLIAVLVLILPPLIIPTASMLME 301


>gi|225850530|ref|YP_002730764.1| putative type II secretion system protein [Persephonella marina
           EX-H1]
 gi|225645276|gb|ACO03462.1| putative type II secretion system protein [Persephonella marina
           EX-H1]
          Length = 406

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/193 (12%), Positives = 64/193 (33%), Gaps = 18/193 (9%)

Query: 5   IKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLG 62
           I+K   +         L+ +   V++GLP++  +  +   + +P   E    +      G
Sbjct: 54  IRKYIYRIKRQEIIEVLENLHLIVKSGLPINTGLMDLAEDAENPSLKEMLFDMAFKIQAG 113

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            +LS++             S     +    +  G+L + L + +  L+  +++KAK +  
Sbjct: 114 ETLSQAAES-----YRDIFSDVVISLFKIGEETGSLDKTLKDAAEHLKKIEDLKAKTKQA 168

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTS-----------PGYMNVLINDPRGHMLLGVAAAF 171
            +    + + +          V               P     ++         G+    
Sbjct: 169 LIYPAFAFFSVLGAMIFWLVYVLPKIIDAFKDFNIELPATTVFIMKTSDFLRSYGIFLVV 228

Query: 172 MLIGIMVMRLMIN 184
           ++  + ++  M+ 
Sbjct: 229 VIFILFILLQMLR 241



 Score = 35.9 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 7/134 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMV 73
           ++    + +   ++AGLP+  A+ ++     + V     R       LG S S+S+ +  
Sbjct: 269 NYAFFAEYVRLMIQAGLPLYQALNIMENAIRNYVFKTAIRNSRNEIELGRSFSDSLKK-- 326

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +    +  G L E L  +S    ++    ++  A  +E      + 
Sbjct: 327 ----ENVFSPLIIRMISIGEQTGALDEQLDYISNYYYNKVEYISQNIAKMIEPIIIGVVG 382

Query: 134 GSLPFCVSTLVYFT 147
           G +   +   +   
Sbjct: 383 GFMLIVMLGFIGPI 396


>gi|320533996|ref|ZP_08034554.1| type II secretion system F domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133784|gb|EFW26174.1| type II secretion system F domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 291

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 69/184 (37%), Gaps = 6/184 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVR---AG-LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           +  K       AL     S+R   AG + +  A+   V  ++  +R +   + +   + +
Sbjct: 92  KQEKLAAAKIEALATWSESLRDTIAGAVGLEQAIPATVYAAAPVLREDLALLADRMRVRV 151

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            L  ++ +    +         + + +     G  L + L  L+   R   +M+ +V A 
Sbjct: 152 PLPTALRQFADDLDDPTADLIVSALIMNARLRGPGLRQLLGALADTARSELDMRQRVSAS 211

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
               + SA I+      V   +   +  ++    +  +G ++L V  A   +G++ MR +
Sbjct: 212 RAGTRRSAQIVVIFSIVVMLGLAVFNRSFVAP-YSSVQGQLVLVVVVALFAVGMLWMRRL 270

Query: 183 INFD 186
               
Sbjct: 271 AGVR 274


>gi|297243109|ref|ZP_06927047.1| hypothetical protein GVAMD_1121 [Gardnerella vaginalis AMD]
 gi|296889320|gb|EFH28054.1| hypothetical protein GVAMD_1121 [Gardnerella vaginalis AMD]
          Length = 191

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 60/181 (33%), Gaps = 13/181 (7%)

Query: 15  DFPNALDIIVRSVRAGLPVS----------DAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           D    L  ++ ++R+G   +            +      +    +  + R    +    +
Sbjct: 2   DIEEVLAGMIAALRSGSTFAMIVHSDSKSQQCICSSAVNTKIIYKWLYERCFPKKR---N 58

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           ++++  R +                + + LG  ++E +   +     +K  +     ++ 
Sbjct: 59  MNKNQRRQLEKHMHTVSESLMASYELSNTLGCAMAECVEATAASYHAQKRAEDLRADVAA 118

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
             KA+  ++ +LP              + +LI    G +LL +      +G+  +  M+ 
Sbjct: 119 MPKATIKLLTALPILALFAGELLGGHPILMLITTVNGWILLTIGGICYGLGLAWVSSMLQ 178

Query: 185 F 185
            
Sbjct: 179 I 179


>gi|291537887|emb|CBL10998.1| hypothetical protein RO1_01760 [Roseburia intestinalis XB6B4]
          Length = 309

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 63/185 (34%), Gaps = 2/185 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++                AL II  +      +  +V   +   + PV++ F   +    
Sbjct: 120 IRLTASHFKKDVSSKLETALSIITTAYLRSEDILTSVEENLEYLNPPVKTVFADFVSRIR 179

Query: 61  L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           L    L  ++  +   +       +   +        +L   L  +   L D + + A++
Sbjct: 180 LIDPDLEAALEELKGKIENDVFMEWVDALKSCL-YDRSLKTTLTPIVAKLSDMRIVNAEL 238

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           + L  E +     +  L      L+YF +  + + L++   G ++L V  A + +    +
Sbjct: 239 EYLVFEPRKEFITMVVLAVGNIPLLYFLNQSWYDTLMHTIPGQIMLAVTGAIIFVSTACV 298

Query: 180 RLMIN 184
             +  
Sbjct: 299 IKLTK 303


>gi|118579254|ref|YP_900504.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
 gi|118501964|gb|ABK98446.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
          Length = 414

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 47/139 (33%), Gaps = 6/139 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           D           +RAG  +  A+      ++   +R   +++ +    G S S +++   
Sbjct: 77  DLVIFFRQTAMMLRAGYTLVTALDASSEMTAKLRLRRTIKKMCDEIRKGGSFSGTLAGEK 136

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           +           + +    +  GNL + L  L+  +   K++K ++ A          + 
Sbjct: 137 KIFTP-----MVSNLIASGEKSGNLDDILDRLADSIERSKDIKRQLVAAMFYPLFVLLVS 191

Query: 134 GSLPFCVSTLVYFTSPGYM 152
             +   +   V      ++
Sbjct: 192 IGVVIFLVLGVIPRFATFL 210


>gi|167561752|ref|ZP_02354668.1| hypothetical protein BoklE_04253 [Burkholderia oklahomensis EO147]
          Length = 234

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66
              +D+ P  +D++      GL +  ++ V+          + SE          G +  
Sbjct: 80  QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTRE 139

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+ R+      +++     ++    + GG + E L      LR+ +    + +   +  
Sbjct: 140 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 199

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           K +  +I +L   +   +    PG + V
Sbjct: 200 KMTGVMIVTLLPALF--IVTAGPGMLAV 225


>gi|226944937|ref|YP_002800010.1| type II secretion system protein F [Azotobacter vinelandii DJ]
 gi|226719864|gb|ACO79035.1| Type II secretion system protein F [Azotobacter vinelandii DJ]
          Length = 396

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 58/177 (32%), Gaps = 12/177 (6%)

Query: 1   MKHLIKKR----TAKFLDDFPNAL--DIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFR 53
           +    ++R      +  + FP  L    +   + AGL + DA+  +   +S    R    
Sbjct: 39  LSLRAERRWSPLRWRRREAFPLVLFSQELTTLLNAGLALIDALESLAEKESDAQARKILA 98

Query: 54  RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
            ++   + G SLS+++       P          +   S+  G + +AL           
Sbjct: 99  DLVRLLYEGKSLSQALGEFPAVFPP-----LYVALVQSSEKTGAVGDALGRYVAYRTRMD 153

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
            ++ K+ + S+       +   +   +   V          L ++      + ++  
Sbjct: 154 EVRQKIVSASVYPLLLLVVGNGVLLFLIGYVVPRFSLVFEGLGSNLPWLSRVLLSVG 210


>gi|33599769|ref|NP_887329.1| putative type II secretion system protein [Bordetella
           bronchiseptica RB50]
 gi|33567366|emb|CAE31279.1| putative type II secretion system protein [Bordetella
           bronchiseptica RB50]
          Length = 417

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 11/160 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSLSESIS 70
            +    L  +     +G+P+ +AV  +  ++      V    RR++E    G  +SE++ 
Sbjct: 70  KELSGMLRDLAVMTGSGIPLLEAVRTVSEENASKRSNVARVGRRLLEDLDAGAPISEAVG 129

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           R     P          + +     G++   L   +  L     MKA  +   +      
Sbjct: 130 RQPDIFP-----ETVRNLILIGDETGSMDRMLLESAEHLERIAAMKADTRQALIYPA--- 181

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           ++  ++       +++  P  + +          L +A  
Sbjct: 182 FVFLAIFGAAGFWIHYVIPNLVGLFQQMNAKLPALTIAVL 221


>gi|219848635|ref|YP_002463068.1| hypothetical protein Cagg_1731 [Chloroflexus aggregans DSM 9485]
 gi|219542894|gb|ACL24632.1| conserved hypothetical protein [Chloroflexus aggregans DSM 9485]
          Length = 308

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 66/193 (34%), Gaps = 11/193 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHL-- 61
            ++   +   +   A+  +   +  GL +  A   ++      P+R E+  +I  Q    
Sbjct: 115 AQRYNRQLERELTPAIGRLSALLSGGLGLRTAFDRLLADMPSGPLRDEWSWLIRQQGALL 174

Query: 62  ----GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                 +L + I+ +         +     ++V +    +L       +         + 
Sbjct: 175 ADGSIATLRQVIAALAGQTLSVRHATLLNHLAVAADQPQDLQARRCAAAYAALQASERRR 234

Query: 118 KVQ-ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH---MLLGVAAAFML 173
           +       + + S   +G     ++  +  T    + V  + P G    +++ +A A  +
Sbjct: 235 EEALTELAQMRYSGLAVGGAGVLMAVYLGATQWERVRVAYSTPLGMVFAVIVSLALAAPI 294

Query: 174 IGIMVMRLMINFD 186
           IG + +  + + +
Sbjct: 295 IGGIWLSRVEDVE 307


>gi|51597377|ref|YP_071568.1| general secretion pathway protein F. [Yersinia pseudotuberculosis
           IP 32953]
 gi|51590659|emb|CAH22301.1| Putative general secretion pathway protein F [Yersinia
           pseudotuberculosis IP 32953]
          Length = 400

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 55/183 (30%), Gaps = 19/183 (10%)

Query: 5   IKKRTAKFLD----------DFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFR 53
           IKKR   F            D       I   V A +P+ + + +   Q S   +    +
Sbjct: 42  IKKRILLFNKYVVKKNSNKTDLVLITRQIATLVNASMPLDEVLDIFGKQNSKSKMIEIIQ 101

Query: 54  RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
           R+      G S ++++S           S     +    ++ G+L   L  L+  +   +
Sbjct: 102 RIRVNIQEGHSFADALSPFPA-----VFSPLYKTMVTAGEVSGHLGLVLVRLADHIEQTQ 156

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
            ++ K+    +       ++      +  L+    P  +           L       + 
Sbjct: 157 KIQRKIIQALIYP---CVLVLISLSVIIILLTAVVPNIVEQFSFSETALPLSTKVLMILS 213

Query: 174 IGI 176
             I
Sbjct: 214 YSI 216


>gi|291521740|emb|CBK80033.1| Bacterial type II secretion system protein F domain [Coprococcus
           catus GD/7]
          Length = 491

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 51/137 (37%), Gaps = 10/137 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---------SDPVRSE 51
           +K  +++R  + L  +P  +  ++  + AG+ V  +   ++  +          D +  E
Sbjct: 331 LKKRLEERNEQLLYAYPGFVHRMILMLGAGMTVRRSWNRLLDDNERLDSGHLEEDWLYRE 390

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANL-SRILR 110
            +        G+   ++     + M LQ+   FS ++    + G    +AL    +    
Sbjct: 391 MKYTRIQMESGVPEIQAYLEFGQRMELQQYKKFSQLLIQYIKRGSKGMQALMQQEAAEAE 450

Query: 111 DRKNMKAKVQALSMEAK 127
            ++   AK    +   K
Sbjct: 451 KQRRDLAKQLGETAGTK 467


>gi|238750504|ref|ZP_04612004.1| Type II secretion system protein [Yersinia rohdei ATCC 43380]
 gi|238711152|gb|EEQ03370.1| Type II secretion system protein [Yersinia rohdei ATCC 43380]
          Length = 374

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 56/185 (30%), Gaps = 23/185 (12%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
           +        +   ++AGLP+ +++ ++  +    P +   + +      G SLSE ++  
Sbjct: 34  ERLIVVTRQLATLLQAGLPLVNSLRMLAKEMDALPWQCLLQEISIQVSQGQSLSEVMALY 93

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P          +    ++ GNL +    L++    ++ ++ KV            I
Sbjct: 94  PHAFP-----RLYPPVIAMGEMTGNLEQCCLKLAQHQEQQQKLQKKVVKALKYPVFVCII 148

Query: 133 IGSLPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGI 176
              +   +  +V                                G  +  +    + IG 
Sbjct: 149 ALVVSIVMLVMVLPEFAQIYQSFDTPLPALTATLLLMSEYLTSYGVFI-ALLLISISIGY 207

Query: 177 MVMRL 181
             MR 
Sbjct: 208 QYMRR 212


>gi|121607680|ref|YP_995487.1| type II secretion system protein [Verminephrobacter eiseniae
           EF01-2]
 gi|121552320|gb|ABM56469.1| type II secretion system protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 416

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 49/157 (31%), Gaps = 6/157 (3%)

Query: 23  IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +RAGL + +A+ V++       V +  + +++    G  LS +++           
Sbjct: 86  LAIMLRAGLALDNALRVLIDMSHKPSVTALVQALLDAVKGGTPLSRALAA-----HGPLF 140

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F   +    +  G +S  L  L   +  ++ ++  V + ++       +       + 
Sbjct: 141 GDFYINMVRSGEASGQMSAVLDRLVEHMERQRALRDSVISATIYPAILLAVALLSLVAML 200

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             V          + +       L +           
Sbjct: 201 GFVVPQFEKLFTDMGDALPLPTRLVMGLGQAFTDYGW 237


>gi|307328261|ref|ZP_07607439.1| Type II secretion system F domain protein [Streptomyces
           violaceusniger Tu 4113]
 gi|306886095|gb|EFN17103.1| Type II secretion system F domain protein [Streptomyces
           violaceusniger Tu 4113]
          Length = 272

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 45/156 (28%), Gaps = 5/156 (3%)

Query: 7   KRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +R         P A D++   + AG     A   + G    PV     +      LG   
Sbjct: 120 RRLEALAARQIPLAADLLTACLAAGAGPRKAAEAVGGSLGGPVGERLAQTAAELRLGAEP 179

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK-NMKAKVQALSM 124
           + +  R+      Q ++     +      G    E ++ L+   R  +     K    + 
Sbjct: 180 AHAWGRIGALPGAQGLAR---ALERAGTTGAPAVEPVSRLAAECRAEQGRAAMKRADRTG 236

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
               +      LP  +   +     G    L+ D  
Sbjct: 237 VLVNAPLAGCFLPAFLLVGLAPVMIGLARGLMGDGP 272


>gi|291459838|ref|ZP_06599228.1| putative bacterial type II secretion system protein F domain
           protein [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417628|gb|EFE91347.1| putative bacterial type II secretion system protein F domain
           protein [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 285

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 48/130 (36%), Gaps = 1/130 (0%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KRTA    + P  +  +   V +G+ + DA  +I   S   +    R   E    G S +
Sbjct: 138 KRTADCELELPEVVSTMAILVNSGMVLRDAWRMIGESSEGAIYKLMREAGENMQNGYSDA 197

Query: 67  ESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           ++I    R     E+  F++ +     + G  L   LA  S  L   K  K         
Sbjct: 198 DAILLFGRATDSPEIIKFTSALLQSMEKGGSELPLFLAKESSELWSSKRQKTLQLGEKAS 257

Query: 126 AKASAWIIGS 135
           AK  A I+  
Sbjct: 258 AKLLAPIMLV 267


>gi|167842247|ref|ZP_02468931.1| General secretion pathway protein F [Burkholderia thailandensis
           MSMB43]
          Length = 167

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 43/144 (29%), Gaps = 6/144 (4%)

Query: 36  AVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQL 94
           ++AV+  Q+  + VR     +      G S + ++ +  R     +       +    + 
Sbjct: 1   SLAVLSEQAEREYVRELMAAIRAEVVGGHSFANALGQHPR-----DFPDIYRALVAAGEH 55

Query: 95  GGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
            G L   L+ L+  +     ++ K+            I   +   + + V          
Sbjct: 56  TGKLGVVLSRLADYIEQSNALRQKILLAFTYPAVVTLIAFGIVTFLLSYVVPQVANVFTS 115

Query: 155 LINDPRGHMLLGVAAAFMLIGIMV 178
                    ++ +A +  +     
Sbjct: 116 TKQPLPTLTVVMLALSDFVRRWWW 139


>gi|331269420|ref|YP_004395912.1| putative pilin biogenesis protein [Clostridium botulinum BKT015925]
 gi|329125970|gb|AEB75915.1| probable pilin biogenesis protein, putative [Clostridium botulinum
           BKT015925]
          Length = 396

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 54/151 (35%), Gaps = 6/151 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHL 61
           ++IK        D       +   ++AG+ +  A+ V+  Q  + + R   + +      
Sbjct: 49  NIIKLFKKVTSMDIGVMCKQLGELLKAGVNIETALEVLENQKINYLIRDSLKIIRRDIER 108

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G +L +SI++  +  P      F   +    +  GNL      L++   D+  MK K++ 
Sbjct: 109 GRTLFQSINKFSKIYP-----EFMRQMIFIGEKSGNLDNIFIKLAKYYMDQHRMKKKIKN 163

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
             M       +   +   ++  +        
Sbjct: 164 AIMYPLCVLIMTIIVTLFITFRIIPKFVDNF 194


>gi|19705384|ref|NP_602879.1| general secretion pathway protein F [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19713371|gb|AAL94178.1| General secretion pathway protein F [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 346

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 66/170 (38%), Gaps = 13/170 (7%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGL 63
           +K +  K L       + +   +++GL  + A+ +I+ +  D    E  +++ +    G 
Sbjct: 1   MKNKKEKIL----FFTNELSIMLKSGLTFTTAIEIILREEKDKNFKEVLKKIHKNLIAGK 56

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S+ ES     +             +    ++ G+++E L ++S+ L      + K+  + 
Sbjct: 57  SIFESFKNFDKIFGN-----TYLYMLKIGEVSGSIAERLEDISKSLEFDLANQKKLGGIL 111

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           +       II      V+ L+ F  P ++ +   +     L+     F+ 
Sbjct: 112 VYPI---VIISLTLIIVTFLLTFILPNFITIFEENQVELPLITRILLFIS 158


>gi|188592036|ref|YP_001796634.1| type II secretion system protein [Cupriavidus taiwanensis LMG
           19424]
 gi|170938410|emb|CAP63397.1| Type II secretion system protein [Cupriavidus taiwanensis LMG
           19424]
          Length = 356

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 65/147 (44%), Gaps = 5/147 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR---SEFRRVIETQHLGLSLSES 68
             D+ P  +D++      GL +  ++ VIV +    +R    E  R  +    G S  ++
Sbjct: 202 VDDELPVLIDMLRLLQGVGLSIDQSLQVIVAEFGSMLRVLGPELARANQQFASGRSREQT 261

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           + R+ R    +++    T+++   + GG + E L      +++ +  + K +   +  K 
Sbjct: 262 LLRIGRLFDSEDLKSLITLLTQVDKHGGAVQEPLRQFGLRMQEARKSRMKDEIGRLTVKM 321

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +A ++ SL   +  L     PG++ V+
Sbjct: 322 TAVMVVSLLPVLLIL--TAGPGFLGVI 346


>gi|171186311|ref|YP_001795230.1| type II secretion system protein [Thermoproteus neutrophilus
           V24Sta]
 gi|170935523|gb|ACB40784.1| type II secretion system protein [Thermoproteus neutrophilus
           V24Sta]
          Length = 262

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 67/193 (34%), Gaps = 10/193 (5%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHL 61
           HL+  R + F ++F   L +++  + AG+P+  AV  +   +    +  E         +
Sbjct: 70  HLVSARRSHFENNFVYTLSVLLPLLAAGVPLGRAVTRLAEVEDDRYIARELALAAREMVV 129

Query: 62  GL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
              S  E++      +P         V++  +++   +   L      +   K ++A+  
Sbjct: 130 MGSSPEEALRNSAARVPSPTYRETVEVLTKAARITQRVDLVLLARLDWMLRAKQVRAQSL 189

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV-----LINDPRGHMLLGVAAAFMLIG 175
             S+      +++  +   +   +   S   +       L  DP   M L       ++G
Sbjct: 190 VRSLSLMFEVFVVAVMLLPIMVYIVALSFSPLGALQIGGLALDPLTLMALIGLVYTPVVG 249

Query: 176 ---IMVMRLMINF 185
               +V   +   
Sbjct: 250 VVFYLVFDSITKI 262


>gi|314922440|gb|EFS86271.1| type II secretion system F domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314965661|gb|EFT09760.1| type II secretion system F domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314982825|gb|EFT26917.1| type II secretion system F domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315091476|gb|EFT63452.1| type II secretion system F domain protein [Propionibacterium acnes
           HL110PA4]
 gi|315094230|gb|EFT66206.1| type II secretion system F domain protein [Propionibacterium acnes
           HL060PA1]
 gi|315104882|gb|EFT76858.1| type II secretion system F domain protein [Propionibacterium acnes
           HL050PA2]
 gi|327329209|gb|EGE70969.1| putative bacterial type II secretion system protein F domain
           protein [Propionibacterium acnes HL103PA1]
          Length = 147

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 4/140 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
              P AL ++  ++ AGLP+  AV  +      P   + RR+  +   G+  S + + + 
Sbjct: 7   AQLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVPDSRAWNDLA 66

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK-ASAWI 132
               ++     +  +S     G  +SE L+  +  L+     KA+ +A           +
Sbjct: 67  ---SVEVWRDPAQDVSRAVNSGEGISELLSAHAAQLQVAAAEKAEKKARKAGVDAIGPLV 123

Query: 133 IGSLPFCVSTLVYFTSPGYM 152
              LP  +   V     G +
Sbjct: 124 CCHLPAFLLVGVVPIIAGMV 143


>gi|282850373|ref|ZP_06259752.1| type II secretion system F domain protein [Veillonella parvula ATCC
           17745]
 gi|282579866|gb|EFB85270.1| type II secretion system F domain protein [Veillonella parvula ATCC
           17745]
          Length = 335

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 54/159 (33%), Gaps = 13/159 (8%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           +    +   + +G+P+  A+ ++       + +     IE              + + + 
Sbjct: 4   DVTYQLGLLIESGVPLRRALQLLCQGKRGLLYTALYESIERGQT----------LSQALR 53

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +  S  +  +    +  G L E+L  +SR     + +K KV +         +++  + 
Sbjct: 54  SEGCSPIALALLESGEAAGTLGESLQYISRHYDWERQLKQKVISAISYPL---FLLLMMN 110

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
                 + F  P + NV         L+  A   +  G+
Sbjct: 111 IFFLVTILFIIPSFENVFTTMHITLPLMTRALFVLGQGL 149


>gi|257139285|ref|ZP_05587547.1| hypothetical protein BthaA_08776 [Burkholderia thailandensis E264]
          Length = 253

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66
              +D+ P  +D++      GL +  ++ V+          + SE          G +  
Sbjct: 99  QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTRE 158

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+ R+      +++     ++    + GG + E L      LR+ +    + +   +  
Sbjct: 159 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 218

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           K +  +I +L   +   +    PG + V
Sbjct: 219 KMTGVMILTLLPALF--IVTAGPGMLAV 244


>gi|94312590|ref|YP_585799.1| type II secretion system protein, transmembrane [Cupriavidus
           metallidurans CH34]
 gi|93356442|gb|ABF10530.1| type II secretion system protein, transmembrane [Cupriavidus
           metallidurans CH34]
          Length = 369

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 64/145 (44%), Gaps = 5/145 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR---SEFRRVIETQHLGLSLSESIS 70
           D+ P  +D++      GL +  ++ +IV +    ++    E +R  +    G S  +++ 
Sbjct: 217 DELPILIDMLRLLQGVGLSIDQSLQIIVTEFGSMLQVLGPELQRSNQQFASGRSREQTLL 276

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           R+ +    +++    T+++   + GG + E L      L+  +  + K +   +  K + 
Sbjct: 277 RIGKLFDDEDLKGLITLLTQVDRHGGAVQEPLRQFGERLQIARKARMKDKIGRLTVKMTG 336

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155
            ++ SL   +  L     PG++ V+
Sbjct: 337 VMVVSLLPVLLIL--TAGPGFLGVM 359


>gi|289191837|ref|YP_003457778.1| Type II secretion system F domain protein [Methanocaldococcus sp.
           FS406-22]
 gi|288938287|gb|ADC69042.1| Type II secretion system F domain protein [Methanocaldococcus sp.
           FS406-22]
          Length = 576

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/170 (11%), Positives = 60/170 (35%), Gaps = 8/170 (4%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
            +    +P  L+ +  +VR+G+ +  A+ V    +  P+    +++      G  ++E  
Sbjct: 371 NQKERYYPIFLNDLTMAVRSGMDIIRAMQVCARTNYGPLTKIIKKMAIQMSWGRPVNEVF 430

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
           + + R          ++++   +  GG++ + L +++        MK ++ A        
Sbjct: 431 ADLERTERSLIAKRIASILKECAVSGGDIKDILTSVTVHAYRLSEMKREISARQFIYVVV 490

Query: 130 AWIIGSLPFCV-STLVYFTSPGYMNV-------LINDPRGHMLLGVAAAF 171
            ++   L       +++   P  +            +     +L  +   
Sbjct: 491 IYLSFFLYLGTSYIMIHSLLPTLLKNVQGLGIEFYKNYLFQGILIYSIFS 540


>gi|118619399|ref|YP_907731.1| hypothetical protein MUL_4231 [Mycobacterium ulcerans Agy99]
 gi|118571509|gb|ABL06260.1| conserved hypothetical membrane protein [Mycobacterium ulcerans
           Agy99]
          Length = 264

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 51/141 (36%), Gaps = 1/141 (0%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
               AL+I+V  +R G     A  V   ++  PV +  R V     LG  ++  +    R
Sbjct: 93  ALEAALEILVGELRVGAHPVRAFGVAADETDGPVAAAMRGVAAHARLGADVTGGLRAAAR 152

Query: 75  YMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
              L       +    + S  G  ++  +    R +  R+   AKV A    A+ASA I+
Sbjct: 153 RSALPAHWERLAVYWQLASDHGLAIATLMRAAQRDVAQRQRFSAKVSAGLAGARASAGIL 212

Query: 134 GSLPFCVSTLVYFTSPGYMNV 154
             LP     L        +  
Sbjct: 213 AGLPVLGVVLGQLIGAQPLAF 233


>gi|145597999|ref|YP_001162075.1| general protein secretion protein [Yersinia pestis Pestoides F]
 gi|270487405|ref|ZP_06204479.1| type II secretion system F domain protein [Yersinia pestis KIM D27]
 gi|145209695|gb|ABP39102.1| general protein secretion protein [Yersinia pestis Pestoides F]
 gi|270335909|gb|EFA46686.1| type II secretion system F domain protein [Yersinia pestis KIM D27]
          Length = 338

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 50/158 (31%), Gaps = 9/158 (5%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
              I   V A +P+ + + ++  Q S   +    +R+      G S ++++S        
Sbjct: 5   TRQIATLVNASMPLDEVLDIVGKQNSKSKMIEIIQRIRVNIQEGHSFADALSPFPA---- 60

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
              S     +    ++ G+L   L  L+  +   + ++ K+    +       ++     
Sbjct: 61  -VFSPLYKTMVTAGEVSGHLGLVLVRLADHIEQTQKIQRKIIQALIYP---CVLVLISLS 116

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            +  L+    P  +           L       +   I
Sbjct: 117 VIIILLTAVVPNIVEQFSFSETALPLSTKVLMILSYSI 154


>gi|290512546|ref|ZP_06551912.1| protein transporter HofC [Klebsiella sp. 1_1_55]
 gi|289774887|gb|EFD82889.1| protein transporter HofC [Klebsiella sp. 1_1_55]
          Length = 401

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 54/158 (34%), Gaps = 6/158 (3%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRY 75
              +  +   ++AGLP++D ++++  Q      ++    +      G++ + ++++  + 
Sbjct: 61  SETIRQLATLLQAGLPLADGLSLLAQQQPHPQWQALLESLGRELAQGVAFTTALAQWPQA 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L      L+   ++++ +  KV+           +   
Sbjct: 121 FPP-----LYLAMISTGELTGKLDICCQQLANQQQEQQRLAGKVKKALRYPLIVLALALL 175

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           +   +   V                    + VAA  ML
Sbjct: 176 VVLGMLYFVLPEFTAIYQTFSTPLPLLTRMVVAAGDML 213



 Score = 38.2 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 41/136 (30%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                   I+  +  AG+     +  +    S    R    +       G  + +++SR 
Sbjct: 261 QQLSLIFTILALTQSAGISFLQGLQSVEATLSCPLWRQRLAQARTLIAQGEPIWQALSRC 320

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             + P          +    +  G L + L NL+   R++ + +A   A  +E       
Sbjct: 321 GGFTP------LCLQLIRTGESAGALDQMLENLAHHHREQTHQRADSLAAHLEPIMLVIT 374

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V  +     
Sbjct: 375 GSLVGILVVAMYLPVF 390


>gi|313905297|ref|ZP_07838664.1| Type II secretion system F domain [Eubacterium cellulosolvens 6]
 gi|313469908|gb|EFR65243.1| Type II secretion system F domain [Eubacterium cellulosolvens 6]
          Length = 351

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 7/157 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           +       +   ++AG+   + +A++   SSD    S    + +  H    L +++ +  
Sbjct: 15  ELSAFAGQMALILKAGISSLEGIAILKDDSSDKKYHSVLMSIQKEMHQSGYLYKALEKSG 74

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
            + P      +   ++   +  GNL   + +LS      + ++       +       I+
Sbjct: 75  SFPP------YMVQMTRIGEETGNLDTVMESLSFHYNREEQIRRNTINSVVYPALMTAIM 128

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
            ++   +   V          L     G  LL + A 
Sbjct: 129 LAVILVLIVRVMPIFEQVFRELGAVITGPALLFINAG 165


>gi|295112043|emb|CBL28793.1| Type II secretory pathway, component PulF [Synergistetes bacterium
           SGP1]
          Length = 382

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/163 (11%), Positives = 54/163 (33%), Gaps = 9/163 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   +++GLP++D++ ++  Q+ D  +     +++     G     +++       
Sbjct: 64  FCRSLASYLKSGLPLADSLRIMAKQARDRHMGPALEKLLAEVEGGRKFHTALAESGA--- 120

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     ++   +  G+L   LA  +   +    +  K++         A +   + 
Sbjct: 121 ---FRESLWRVAESGEQSGSLISVLAEAAEQFKLEDGLVRKIRGAMTYPIVMAVVGVGVV 177

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI--GIMV 178
             + T V          +         + +  +  +I  G+ V
Sbjct: 178 TFMLTYVVPKISSLFEDMHQTLPLPTRILIGLSSFIIDWGVWV 220



 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 48/142 (33%), Gaps = 11/142 (7%)

Query: 9   TAKFLDDFPNAL--DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
                +    AL    +   +R+G+P+  A+ +                         + 
Sbjct: 243 MRGINEQLTLALVTSHLSTLLRSGIPLVQALRMAS-SMDPR--------ARRWLDCAEMV 293

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++  R  R +           +    ++GG LS+AL+N+S   R+    + +  +  ME 
Sbjct: 294 KAGHRFDRALERTGFPEEIVAVVRVGEMGGELSQALSNVSGQCREIAQSRMERLSTLMEP 353

Query: 127 KASAWIIGSLPFCVSTLVYFTS 148
                +  S+ F V  ++    
Sbjct: 354 MMVLLLGVSVGFIVLAILTPVF 375


>gi|229825611|ref|ZP_04451680.1| hypothetical protein GCWU000182_00973 [Abiotrophia defectiva ATCC
           49176]
 gi|229790174|gb|EEP26288.1| hypothetical protein GCWU000182_00973 [Abiotrophia defectiva ATCC
           49176]
          Length = 347

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 64/173 (36%), Gaps = 13/173 (7%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRM 72
           ++     D I   +  G+P+ +   ++  +      +   ++V +    G+S +E++   
Sbjct: 10  EEISVFCDQIAMILNGGIPIFEGTHILYEEMDEGRTKDILKKVDDNVKSGMSFNEALKES 69

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                      +   +    ++ G L + + +LS        +K  ++++         +
Sbjct: 70  GA------FPNYMCEMVKIGEMTGKLEDIMRSLSGFYERENLVKNSIRSVISYPT---VL 120

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           +G +   +  LV    P + ++ +    G    G     M   I+V ++++  
Sbjct: 121 LGMMAVILMVLVGKILPMFEDIFLELDAGT---GTTVGIMNTSILVSKVIVCI 170


>gi|320108203|ref|YP_004183793.1| type II secretion system F domain-containing protein [Terriglobus
           saanensis SP1PR4]
 gi|319926724|gb|ADV83799.1| Type II secretion system F domain protein [Terriglobus saanensis
           SP1PR4]
          Length = 399

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 58/182 (31%), Gaps = 9/182 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGL 63
             KR    L+ F       V  ++AGLP+  ++ ++  +  D         + E    G 
Sbjct: 50  ASKRKKVKLESFLIFNQQFVTLIKAGLPIPGSLQLLGRRQKDLRLKAQLENIAERVKTGE 109

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           SLS +                 T   +  +  GNL E L       R     + K++A  
Sbjct: 110 SLSAAFDAQG------GFPLVYTTTLLAGERSGNLEEVLQRYLDFQRISLTFRKKLKASM 163

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG--VAAAFMLIGIMVMRL 181
           +       ++ SL   + T V        + L        +    V       GI +  +
Sbjct: 164 VYPVLLVTLVLSLFIFLITFVVPRFATLYDQLNTPLPAITVFLLHVGNIAQNYGIYIAVV 223

Query: 182 MI 183
           ++
Sbjct: 224 LV 225


>gi|302530824|ref|ZP_07283166.1| predicted protein [Streptomyces sp. AA4]
 gi|302439719|gb|EFL11535.1| predicted protein [Streptomyces sp. AA4]
          Length = 231

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 47/127 (37%), Gaps = 3/127 (2%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           LD++   +RAG+PV  A+A +   +     +          LG   + + + +       
Sbjct: 94  LDLLAACLRAGMPVPTALAAVAPGAPPDTENALHATANLLALGSDAAPAWAPLRARPGFA 153

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
           E    +   +  ++ G  L+    +L+R +RD   ++A+ +A       +  +       
Sbjct: 154 E---LAVAATRTARSGAALASTADDLARRVRDGLGVEAEERAERAGVALAMPVGLCFLPA 210

Query: 140 VSTLVYF 146
              L   
Sbjct: 211 FFALGVL 217


>gi|46447530|ref|YP_008895.1| putative protein of the general secretion pathway [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46401171|emb|CAF24620.1| putative protein of the general secretion pathway [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 395

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 55/180 (30%), Gaps = 8/180 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60
           K  I  +     +        + + V AG+P+ +++  I  QS           + E   
Sbjct: 45  KSKINGKQNLKGEALLAFTVQLSQLVNAGIPLYESLIAIEEQSRGESFHRVVLSLCEQIR 104

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+SLS +++                 +    +  G L   L  L+++L  +  +K ++ 
Sbjct: 105 TGMSLSGAMATYSES-----FDQLYCGMVAAGEAVGMLGPILEKLTQLLAKQMKLKKQIT 159

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
              +           +   +   V  +  G       +   + +L    +        + 
Sbjct: 160 TAMIYPCILGGFSLLIITLLLGFVVPSLEGIFAERKLNAFTNAIL--GLSHFFRNYWWLY 217



 Score = 35.1 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 10/137 (7%), Positives = 38/137 (27%), Gaps = 7/137 (5%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESIS 70
                      +   ++ GL + +++ +  G   +  +  E ++       G SLS+   
Sbjct: 256 IQTAVARFCRTMGTLLQGGLNMIESLRISRGVMHNVVLEKEIQQAEAKIIEGHSLSQ--- 312

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
                   + +    + +    +  G     L+ ++ +                +     
Sbjct: 313 ---ELGKSKYIPPLVSKMLAVGEESGTSIVMLSRIADMYEQEIEKTLDRVMALAQPVILI 369

Query: 131 WIIGSLPFCVSTLVYFT 147
            +   +   +  ++   
Sbjct: 370 VMGLVIGTVLLAIMLPL 386


>gi|314922439|gb|EFS86270.1| conserved hypothetical protein [Propionibacterium acnes HL001PA1]
          Length = 236

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 52/158 (32%), Gaps = 5/158 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            D   A   +   V  G   S A+  +             +      +G S+S+++    
Sbjct: 83  RDVARATRALAGRVSVGEIPSVALEHVADDVE-----VLAQARRAHAVGGSVSDALIATS 137

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R   +  +   +    + +  G  L+ A  +++     R  ++A + +    A+AS  I+
Sbjct: 138 RQPGMAGLVPLAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIM 197

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
           G LP     + +         L     G   L  +   
Sbjct: 198 GLLPLVGLLMGHVVGAHPTVFLTTTRLGRACLLGSTLL 235


>gi|6176560|gb|AAF05620.1|AF190908_1 XpsF [Xanthomonas oryzae pv. oryzae]
          Length = 156

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 40/120 (33%), Gaps = 7/120 (5%)

Query: 1   MKHLIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           ++ L+  R   F +         +   + AG P+  A+++++         E  R +   
Sbjct: 40  LRMLL--RKKPFDNAALVQFTQQLATLIGAGQPLDRALSILMD----LPEDEKSRRVIGD 93

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                   +             S     +    + GG++ + L  L+  L   + ++ KV
Sbjct: 94  VRDTVRGGAPLSSALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKV 153


>gi|257092074|ref|YP_003165715.1| type II secretion system protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044598|gb|ACV33786.1| type II secretion system protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 410

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/186 (12%), Positives = 59/186 (31%), Gaps = 21/186 (11%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   +RAG  + +A+       +   + S   R  +    G S S +++R
Sbjct: 71  NSDLMLFYRQMQLMLRAGHTILEALEAAGRLSARPRLSSLLDRCAQRISAGSSFSAALAR 130

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P       +  ++   +  G L      L+ +   R +++ ++            
Sbjct: 131 ESSTFP-----RLAVKLAEAGEASGELDAVFERLAVLTEKRADVRRQMMTALTYPAIVTL 185

Query: 132 IIGSLPFCVSTLVYFTSPGYMN-------------VLINDPRGHM--LLGVAAAFMLIGI 176
           +   +   +   V      ++              + + D  G     L +A   +++G 
Sbjct: 186 VSIGVISFLVGSVVPRFAVFLQARGKAVPWAARTMMEMADWLGRWGFTLVMALLGLVVGF 245

Query: 177 MVMRLM 182
           + +R +
Sbjct: 246 IALRRL 251


>gi|160931592|ref|ZP_02078987.1| hypothetical protein CLOLEP_00424 [Clostridium leptum DSM 753]
 gi|156869463|gb|EDO62835.1| hypothetical protein CLOLEP_00424 [Clostridium leptum DSM 753]
          Length = 346

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/175 (8%), Positives = 49/175 (28%), Gaps = 9/175 (5%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSL 65
           +R      +       +   V+AG+ + + + ++     +        ++ +    G S 
Sbjct: 3   RRKILSNSEISAFCGQLSLIVKAGISLQEGLLIMAEDDKNGRGGEIIEKLTDVMEAGGSF 62

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           + ++     +        +   +    +  G L E L +L         +   +++  + 
Sbjct: 63  AAALKESGEFPG------YMVTMVEIGEASGKLEEVLESLRAYYERNDAVSRSIRSSVIY 116

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN--DPRGHMLLGVAAAFMLIGIMV 178
                 ++ ++   +   V          L          L+          + +
Sbjct: 117 PLVMIVMMVAVILVIIIQVLPVFQQVFEQLGGEMSQFAQGLMSFGRGVSQYAVWI 171


>gi|73539235|ref|YP_299602.1| type II secretion system protein [Ralstonia eutropha JMP134]
 gi|72122572|gb|AAZ64758.1| type II secretion system protein [Ralstonia eutropha JMP134]
          Length = 344

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 65/147 (44%), Gaps = 5/147 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR---SEFRRVIETQHLGLSLSES 68
             D+ P  +D++      GL +  ++ +IV +    +R    E     +    G S  ++
Sbjct: 190 VEDELPIVIDMLRLLQGVGLSIDQSLQIIVSEFGGMLRVLGPELALSNQQFASGRSREQT 249

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           + R+ R    + +    T+++   + GG + E L    + +++ +  + K +   +  K 
Sbjct: 250 LLRIGRLFDSENLKSLITLLTQVDRHGGAVQEPLRLFGQRMQEARKSRMKDEIGRLTVKM 309

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +A ++ S+   +  L+    PG++ V+
Sbjct: 310 TAVMVVSMLPVL--LIITAGPGFLGVI 334


>gi|15895374|ref|NP_348723.1| general secretion pathway protein F [Clostridium acetobutylicum
           ATCC 824]
 gi|15025093|gb|AAK80063.1|AE007711_20 General secretion pathway protein F [Clostridium acetobutylicum
           ATCC 824]
 gi|325509519|gb|ADZ21155.1| General secretion pathway protein F [Clostridium acetobutylicum EA
           2018]
          Length = 396

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 65/196 (33%), Gaps = 25/196 (12%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +       +       +   + AG  + ++++++  +    +R   + + +    G S+ 
Sbjct: 52  RNKKVSSKELYIFSKQMSYMMNAGFNICESLSIMYDKFQGNMRRIIKCIEKGIENGNSIY 111

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+      +P      F   +    +  GNLSE   NL    +D+   + K++  +   
Sbjct: 112 KSVQYCGDSIPY-----FFKSMLFIGEESGNLSEVFRNLGEYYKDQWKTEEKIKNATTYP 166

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML----------------LGVAAA 170
                +       +  LV    P ++  L N   G +                      A
Sbjct: 167 A---IVFAFTIIILVFLVSKVIPRFVETL-NSLGGKLPKITEFILSVSFFIKDDFLGIIA 222

Query: 171 FMLIGIMVMRLMINFD 186
           F+LI   + + ++   
Sbjct: 223 FILIIYGISKKLLRVK 238


>gi|163857178|ref|YP_001631476.1| general secretion pathway protein F [Bordetella petrii DSM 12804]
 gi|163260906|emb|CAP43208.1| general secretion pathway protein F [Bordetella petrii]
          Length = 400

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/177 (11%), Positives = 59/177 (33%), Gaps = 8/177 (4%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62
            +++R +    +       +   + A LP+  A+   + Q+    V      V +    G
Sbjct: 53  RLQRRLS--DGELAWLTRQLASLLAARLPLDAALNATLEQAESRHVAGALAGVRDEVRAG 110

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             L+++++   R     +       +    +  G+L++ +  L+  + +R  ++ KV   
Sbjct: 111 YRLADALATRPR-----DFPEIYRALVAAGEESGDLAQVMEKLAGYIEERNALRGKVMTA 165

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            +     A +   +   +   V        +           + +A +  +     +
Sbjct: 166 FIYPAVVACVSVVIVAFLLGYVVPQVITAFDHAHQQLPLLTRIMLALSDFVRQWGWV 222



 Score = 35.1 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 38/130 (29%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +     +G+ +  A+        +D +R       E    G  L+ +++       
Sbjct: 269 FASTLAILSGSGVSLLGALNAARRTLGNDRLRRAVDEAAERVREGAPLASALAA------ 322

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +        +    +  G L E L   ++ L      +A      +E      + G + 
Sbjct: 323 QKVFPSLLIHLIASGEKTGRLPELLERGAQNLSRDLERRAMAMTALLEPLLILLMGGFVL 382

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 383 LIVLAVMMPI 392


>gi|134046668|ref|YP_001098153.1| type II secretion system protein [Methanococcus maripaludis C5]
 gi|132664293|gb|ABO35939.1| type II secretion system protein [Methanococcus maripaludis C5]
          Length = 298

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 80/197 (40%), Gaps = 17/197 (8%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLG 62
           + + +  KF  + P AL ++V S+ +G  V +A+  ++      V   F +V+       
Sbjct: 77  MYESKMDKFDKNIPKALYVMVLSLDSGRSVVEAINEVIRSGIPEVDVVFSKVVTLMTERK 136

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           LS  +++  +   +  +       +I    + GG L++ L  L++ L D +N+K+++ ++
Sbjct: 137 LSFEDAMILVSNSLDSKIFRQVGRLIIENRKYGGELADTLKKLAKTLEDLQNLKSQLMSV 196

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR----------------GHMLLG 166
           +    A   II       +  +       ++ L                     G  L G
Sbjct: 197 TANGLAVGLIILCGVIPATAGLIGGYLTVISQLAPTMPSVEASQISKAIETIQIGSGLFG 256

Query: 167 VAAAFMLIGIMVMRLMI 183
           +  A  L G+ + R++I
Sbjct: 257 LFFAVPLFGLKINRMII 273


>gi|317493265|ref|ZP_07951687.1| type II secretion system protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918658|gb|EFV39995.1| type II secretion system protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 397

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 47/137 (34%), Gaps = 6/137 (4%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           ++ +   + AGLP++  + ++         +   +R+    + G+ LSE++       P 
Sbjct: 64  IEQLATLLHAGLPLAKCLTLLAEGHPLRHWQCLLQRLASQINNGIPLSEAMMDYSSIFPP 123

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                 +T      +L G L E+   LS   + +  +KAK+            +   +  
Sbjct: 124 VYGKTIATA-----ELTGRLDESCLALSEQQKRQVELKAKIVKALRYPALLLSVTVIVIT 178

Query: 139 CVSTLVYFTSPGYMNVL 155
            +   V           
Sbjct: 179 IMLVWVLPQFAELYKNF 195


>gi|297617363|ref|YP_003702522.1| type II secretion system F domain protein [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297145200|gb|ADI01957.1| Type II secretion system F domain protein [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 402

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 48/159 (30%), Gaps = 8/159 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                     +   +R+G+ VSD + ++  Q SD +          +     LS      
Sbjct: 61  SQSLAVLCRQMAMVLRSGMGVSDGLELVSRQVSDRLLRREAL----RLYREVLSGRSLSE 116

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                   +      +    +  GNL + L N+S+  + R   + +V+   +       +
Sbjct: 117 AMMAEDSLIPGLLARMVATGEASGNLEQILHNMSQYYQQRYETEKRVKGALIYPALLMVV 176

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
              L   V   +       +  L++     + L      
Sbjct: 177 GIGLLAYVFAFLIPQ----VESLLHSAGARLPLVTRIIL 211


>gi|171059294|ref|YP_001791643.1| type II secretion system protein [Leptothrix cholodnii SP-6]
 gi|170776739|gb|ACB34878.1| type II secretion system protein [Leptothrix cholodnii SP-6]
          Length = 382

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 63/166 (37%), Gaps = 10/166 (6%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R A+  ++       +   +R+GL + +A+  +  +      +  +R++E    G +LS 
Sbjct: 38  RDARLDEE--QFSHDLALMLRSGLSLIEALRTVAERQHGSAATAMQRLLEALSQGETLST 95

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++    +       S         S+L G+L+++L   ++     + +++++ +  +   
Sbjct: 96  ALQSSGQ------FSTAMLACVKASELTGDLADSLGRFAQNATRMRQLRSRLVSACVYPG 149

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAF 171
               +   +   +   V       +     D  P   +L+ V  A 
Sbjct: 150 LLITVASLVVLFLLIYVVPRFAMVLEGAARDMSPMSRLLIDVGMAL 195


>gi|288931900|ref|YP_003435960.1| type II secretion system F domain protein [Ferroglobus placidus DSM
           10642]
 gi|288894148|gb|ADC65685.1| Type II secretion system F domain protein [Ferroglobus placidus DSM
           10642]
          Length = 634

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 55/156 (35%), Gaps = 3/156 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           +  K     P+ L  +     +GL +  A+ V+       +  E R++ +    G  ++E
Sbjct: 416 KLRKLEKHLPDFLRGLGSLNESGLNIVTAIKVLSATQLGVLTEEVRKIRKDIEWGRLVTE 475

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++ R    +    VS   ++I+       N+  A+   +  +    + + +++       
Sbjct: 476 ALERFEDRVGSSLVSKVVSIINKALMATSNVKAAILAAAADVELLLDFRERLKNAM---F 532

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
               II          V      +++V  N   G +
Sbjct: 533 TYMVIIYVTFAVFLFTVVVVLQNFISVFSNISVGQI 568



 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 67/182 (36%), Gaps = 6/182 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQ 59
             + + R AK      +   +++   + G P+ +    +  +   +  V  EF  ++   
Sbjct: 125 SFIARSRKAKIDATLYHVASLMLGMAKGGTPLLELFRTVAEERHVTGEVGKEFSIIVRNV 184

Query: 60  HLGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            +    +  SI  +    P Q++  F   ++   + G +LSE L      L + +    +
Sbjct: 185 TVFGKDIITSIKEVAATTPSQKLRDFLEDLAGVLEGGSSLSEFLEFKIAHLAEERERAYQ 244

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +   S E  A  ++   +   + +L+ F     MN++       M   V     + G+  
Sbjct: 245 LYISSYEILAEIYVAMLIVAPLFSLIVFVV---MNMIGESTINLMKAMVYLYIPIGGLFF 301

Query: 179 MR 180
           + 
Sbjct: 302 VY 303


>gi|149927029|ref|ZP_01915287.1| putative tight adherence tadc related transmembrane protein
           [Limnobacter sp. MED105]
 gi|149824250|gb|EDM83470.1| putative tight adherence tadc related transmembrane protein
           [Limnobacter sp. MED105]
          Length = 317

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 53/146 (36%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +K + + R A F  +    +D++      GL V  ++ V+  Q            RR   
Sbjct: 154 LKTVGEGREAAFERELVAVVDVMRLLQGVGLSVDQSIEVMTSQLYDLVPITGRMLRRSRA 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+     + RM       E   F  V+    + GG + E L   S  L +++   A
Sbjct: 214 QVKSGVPWIVMLKRMSSMYSSDEFKSFVQVLEQIEKFGGAVQEPLKQFSDRLVEKERANA 273

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           K     +  K +  ++ ++   +  +
Sbjct: 274 KETMGKLTVKLTGVMVITMLPALLIM 299


>gi|288937124|ref|YP_003441183.1| type II secretion system F domain protein [Klebsiella variicola
           At-22]
 gi|288891833|gb|ADC60151.1| Type II secretion system F domain protein [Klebsiella variicola
           At-22]
          Length = 401

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 54/158 (34%), Gaps = 6/158 (3%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRY 75
              +  +   ++AGLP++D ++++  Q      ++    +      G++ + ++++  + 
Sbjct: 61  SETIRQLATLLQAGLPLADGLSLLAQQQPHPQWQALLESLGRELAQGVAFTTALAQWPQA 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L      L+   ++++ +  KV+           +   
Sbjct: 121 FPP-----LYLAMISTGELTGKLDICCQQLANQQQEQQRLAGKVKQALRYPLIVLALALL 175

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           L   +   V                    + VAA  ML
Sbjct: 176 LVLGMLYFVLPEFTAIYQTFSTPLPLLTRMVVAAGDML 213



 Score = 37.8 bits (86), Expect = 0.63,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 41/136 (30%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                   I+  +  AG+     +  +    S    R    +       G  + +++SR 
Sbjct: 261 QQLSLIFTILALTQSAGISFLQGLQSVEATLSCPLWRQRLAQARTLIAQGEPIWQALSRC 320

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             + P          +    +  G L + L NL+   R++ + +A   A  +E       
Sbjct: 321 GGFTP------LCLQLIRTGESAGALDQMLENLAHHHREQTHQRADSLAAHLEPIMLVIT 374

Query: 133 IGSLPFCVSTLVYFTS 148
              +   +  +     
Sbjct: 375 GSLVGILLVAMYLPVF 390


>gi|254456692|ref|ZP_05070121.1| type II Secretion System PilC [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083694|gb|EDZ61120.1| type II Secretion System PilC [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 413

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 49/158 (31%), Gaps = 11/158 (6%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
                V+AGLP+ + + ++  Q     ++     V +    G++LS+   R  +      
Sbjct: 79  QFATMVKAGLPILNVLTMLRDQIEHPTMKEIIEDVRKNLEGGITLSKCFERYPKI----- 133

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
                  +    +  G L   L  L   L  R+ +K K++           +  ++   +
Sbjct: 134 FDSVYINLIKAGEASGKLDTFLLKLVESLEKREKVKKKIKGALTYPVVMFSVAITVMVFM 193

Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
              V          +     G  L    A  M     +
Sbjct: 194 LIKVVPVFAKMYEGM-----GVALPTPTAVIMTASNFM 226


>gi|206580419|ref|YP_002240423.1| protein transport protein HofC [Klebsiella pneumoniae 342]
 gi|206569477|gb|ACI11253.1| protein transport protein HofC [Klebsiella pneumoniae 342]
          Length = 401

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 54/158 (34%), Gaps = 6/158 (3%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRY 75
              +  +   ++AGLP++D ++++  Q      ++    +      G++ + ++++  + 
Sbjct: 61  SETIRQLATLLQAGLPLADGLSLLAQQQPHPQWQALLESLGRELAQGVAFTTALAQWPQA 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +    +L G L      L+   ++++ +  KV+           +   
Sbjct: 121 FPP-----LYLAMISTGELTGKLDICCQQLANQQQEQQRLAGKVKKALRYPLIVLALALL 175

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           +   +   V                    + VAA  ML
Sbjct: 176 VVLGMLYFVLPEFTAIYQTFSTPLPLLTRMVVAAGDML 213



 Score = 37.8 bits (86), Expect = 0.63,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 41/136 (30%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                   I+  +  AG+     +  +    S    R    +       G  + +++SR 
Sbjct: 261 QQLSLIFTILALTQSAGISFLQGLQSVEATLSCPLWRQRLAQARTLIAQGEPIWQALSRC 320

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             + P          +    +  G L + L NL+   R++ + +A   A  +E       
Sbjct: 321 GGFTP------LCLQLIRTGESAGALDQMLENLAHHHREQTHQRADSLAAHLEPIMLVIT 374

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V  +     
Sbjct: 375 GSLVGILVVAMYLPVF 390


>gi|293604905|ref|ZP_06687302.1| general secretion pathway protein F [Achromobacter piechaudii ATCC
           43553]
 gi|292816733|gb|EFF75817.1| general secretion pathway protein F [Achromobacter piechaudii ATCC
           43553]
          Length = 401

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/166 (10%), Positives = 50/166 (30%), Gaps = 4/166 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           RT     D       +   + A LP+  A++  + Q+     +     +         + 
Sbjct: 56  RTRLSDADLAWLTRQLASLLAARLPLDAALSATLEQAEKKHIAATLGAVRDDV----RAG 111

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
                      ++       +    +  G+L++ +  L+  + +R  +++KV    +   
Sbjct: 112 HRLSTALAARPRDFPEIYRALIGAGEESGDLAQVMEKLADYIEERNTLRSKVMTAFIYPA 171

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             A +   +   +   V        N           + +A +  +
Sbjct: 172 VVASVSVIIVIFLLGYVVPQVVSAFNHAKQQLPMLTRMMLALSDYV 217


>gi|291295428|ref|YP_003506826.1| type II secretion system protein [Meiothermus ruber DSM 1279]
 gi|290470387|gb|ADD27806.1| type II secretion system protein [Meiothermus ruber DSM 1279]
          Length = 399

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 6/160 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +     + +   VRAG+P+  A+  +     S  +R   R + E    G  L+ ++    
Sbjct: 59  ELVILTEQLATMVRAGVPLVQALHTLSLQAGSPSLREALRGLRERIEAGQGLARAMEDYP 118

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           +  P          +    +LGG+L   L  L+  L     ++ K +           ++
Sbjct: 119 QVFPP-----LMRHLVAAGELGGSLEVVLQRLAEYLDKSYELQEKTRTALFYPCFVLGVL 173

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           G +   +   V                G     ++++   
Sbjct: 174 GVVVAVLLVFVIPVFAQLYRETGVALPGPTQFLLSSSAFF 213


>gi|119476013|ref|ZP_01616365.1| general secretion pathway protein F [marine gamma proteobacterium
           HTCC2143]
 gi|119450640|gb|EAW31874.1| general secretion pathway protein F [marine gamma proteobacterium
           HTCC2143]
          Length = 410

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 53/161 (32%), Gaps = 9/161 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            +       +   +++ +P+ +A+  I  Q+  + +R     V      G SL+ S++  
Sbjct: 72  AELAVITRQLATLIQSAMPLEEALTAISQQTDSNKLRGIVLNVRSKVMEGHSLAHSMADY 131

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P               +  G+L   L  L+    +    + K +   +       +
Sbjct: 132 PNAFPG-----LFRATVAAGEHSGHLELVLNRLADYTENAYQSRQKTKLALLYPA---IL 183

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
                  VS L+ F  P  ++V I   +   LL      + 
Sbjct: 184 FFLAIAIVSGLMAFVVPDVVDVFIGQGQELPLLTRGLISLS 224



 Score = 38.6 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/127 (10%), Positives = 41/127 (32%), Gaps = 7/127 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +     +G+P+ +A+ +      +  ++       +    G S+ +++ +   + P    
Sbjct: 284 LSILTSSGVPLVEAMKIAAKVVENCFLQQAVHLATQQVREGGSMHQALEQSGYFPP---- 339

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L   L  +S   +   +          E     ++ G++   V 
Sbjct: 340 --IMIHMIASGEASGELDTMLERISDSQQKELDNLVATLIGIAEPVMLVFMGGAVLIIVV 397

Query: 142 TLVYFTS 148
            ++    
Sbjct: 398 AILQPIF 404


>gi|317123680|ref|YP_004097792.1| type II secretion system F domain [Intrasporangium calvum DSM
           43043]
 gi|315587768|gb|ADU47065.1| Type II secretion system F domain [Intrasporangium calvum DSM
           43043]
          Length = 266

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 52/169 (30%), Gaps = 4/169 (2%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET----QHLGLSLSESISRMVR 74
            L+ +  ++ AGL  S AV +        +     R++         G  ++        
Sbjct: 80  LLEGVAPALEAGLTPSVAVRLSGATLRSSIDPLTARLVAELTETSERGAHVAPVWRSWAG 139

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
               +E+ F +    +    G  L++A+      +   +    +V       +A+  ++ 
Sbjct: 140 AEGSEELRFVAAAWQLSEVTGAPLADAVRRAVASVHQARERARRVHVAVAGPRATVVVLT 199

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            LP                + +  P       +    + +G    R ++
Sbjct: 200 VLPLTGPLFGLACGVPPTELYLASPLSSAAAALGLVLIWVGRRWCRRLV 248


>gi|293392844|ref|ZP_06637162.1| protein transporter [Serratia odorifera DSM 4582]
 gi|291424703|gb|EFE97914.1| protein transporter [Serratia odorifera DSM 4582]
          Length = 399

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 51/162 (31%), Gaps = 6/162 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
           +        +   ++AGLP+ + + ++  +      R     +      G   SE+I+  
Sbjct: 59  EALIQFTRQLATLLQAGLPLVNTLQLLAQEHPCAAWRCLLADLGALVAQGQPFSEAIADY 118

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +  P          +    +L GNL      L++    ++ ++ KV A          +
Sbjct: 119 PQIFPQ-----VYRQLIAIGELTGNLDRCCWQLAQQQDQQQKLQKKVVAALRYPLFVCTV 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
              +   +  +V                      +A + +LI
Sbjct: 174 ALLVSIVMLVMVLPEFAKVYQSFDAPLPWFTQGLLALSSLLI 215


>gi|288921590|ref|ZP_06415862.1| hypothetical protein FrEUN1fDRAFT_5560 [Frankia sp. EUN1f]
 gi|288347008|gb|EFC81313.1| hypothetical protein FrEUN1fDRAFT_5560 [Frankia sp. EUN1f]
          Length = 294

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 62/175 (35%), Gaps = 2/175 (1%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           +  D      + I   + AG  +  A+A         +    +R+       + L +++ 
Sbjct: 99  RLGDAVATWAEQIREGLDAGQHLRAAIAASTDHPPAELADPLQRLAARLRSAMPLPDALW 158

Query: 71  RMVRYMPLQEVSFFSTVI-SVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            +   +P   +      +     +  G+L   +A+ +   R+   +     AL    + +
Sbjct: 159 ALRAEVPHPTLGPVIIALDVAYRRGAGDLPRLMASQTAATREATALLRDQHALRARHRRA 218

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
             ++ +L     T++    P ++     + +G + L V    +++ +  +  M  
Sbjct: 219 MTLLLALFTGAITVLLVAWPNFLAP-YRNLQGQLALTVIGGGVVLAVRALAAMSR 272


>gi|254293818|ref|YP_003059841.1| general secretion pathway protein F [Hirschia baltica ATCC 49814]
 gi|254042349|gb|ACT59144.1| general secretion pathway protein F [Hirschia baltica ATCC 49814]
          Length = 401

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 57/181 (31%), Gaps = 18/181 (9%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + +G PV +A+A +   S  + VRS    V      G  LS+++S      P
Sbjct: 66  LTRQLAMLISSGTPVEEALAAVGDTSRKNAVRSVLADVRSNVVEGQPLSDAMSSQSSAFP 125

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                   T I    +  G L   +A L+      + M+ KV +  +     A +   + 
Sbjct: 126 P-----LYTSIVAAGESAGALDAVMARLADYQEKSEEMRGKVVSALIYPMVVAVVALMVV 180

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGV---------AAAFM---LIGIMVMRLMINF 185
             +   V        + +         + V                  +G+ V+  M   
Sbjct: 181 VALLVFVVPRVVEQFDTMGQKLPLLTQIMVNISEFLQAYGLVLFGACAVGVFVLGHMSKV 240

Query: 186 D 186
           D
Sbjct: 241 D 241


>gi|153938465|ref|YP_001391230.1| type II secretion system protein F [Clostridium botulinum F str.
           Langeland]
 gi|152934361|gb|ABS39859.1| bacterial type II secretion system protein F [Clostridium botulinum
           F str. Langeland]
 gi|295319266|gb|ADF99643.1| bacterial type II secretion system protein F [Clostridium botulinum
           F str. 230613]
          Length = 396

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/186 (11%), Positives = 66/186 (35%), Gaps = 16/186 (8%)

Query: 2   KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           K+L K R+ K    +     + +   + +G+ ++DA+ ++    ++         I    
Sbjct: 45  KNLFKIRSEKITLKECSILCNKLYMLMASGINITDAINIVYEDFNNVHVKNSLYTIRNNI 104

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           L      +  +            F   +    +  G +   L++L     ++     +++
Sbjct: 105 LRGDSIYNSFK----GFSNIYPKFLLSMIYIGEESGRIQYVLSDLKNFYENKYKFNKEIK 160

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM-------LLGVAAAFML 173
              +       ++ +    +  L++   P ++  L N+  G +       +  +    ++
Sbjct: 161 NALIYPI---IVLIAFIIMLYILIHMVVPSFIG-LFNELGGSIPKKTLGMITAIKVFNVI 216

Query: 174 IGIMVM 179
           +GI+ +
Sbjct: 217 LGILFI 222



 Score = 37.0 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           N  + +   +++G+P++ ++ ++   + + +  E  +     +L  ++ +  S  +    
Sbjct: 265 NFSNSMNLMIKSGIPINKSLKLLEEVTDNYIFKENIK-----NLNKNIKDGKSISISLNK 319

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               +     +    +  G L E+  ++ +IL+     K KV    +E     ++   + 
Sbjct: 320 CGFSNKILLSMVHIGEESGRLEESFYSVYKILKKDLEEKLKVSVKLIEPTIIIFMSLIIC 379

Query: 138 FCVSTLVYFT 147
                +    
Sbjct: 380 IIFIYVFIPM 389


>gi|83718806|ref|YP_443055.1| hypothetical protein BTH_I2538 [Burkholderia thailandensis E264]
 gi|83652631|gb|ABC36694.1| membrane protein, putative [Burkholderia thailandensis E264]
          Length = 373

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66
              +D+ P  +D++      GL +  ++ V+          + SE          G +  
Sbjct: 219 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTRE 278

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+ R+      +++     ++    + GG + E L      LR+ +    + +   +  
Sbjct: 279 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 338

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           K +  +I +L   +   +    PG + V
Sbjct: 339 KMTGVMILTLLPALF--IVTAGPGMLAV 364


>gi|119872897|ref|YP_930904.1| type II secretion system protein [Pyrobaculum islandicum DSM 4184]
 gi|119674305|gb|ABL88561.1| type II secretion system protein [Pyrobaculum islandicum DSM 4184]
          Length = 262

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 66/177 (37%), Gaps = 5/177 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHL 61
           HL+  R + F ++F   L +++  + AG+P+  AV  +   +    +  E         +
Sbjct: 70  HLVSARRSHFENNFVYTLSVLLPLLAAGVPLGRAVTRLAEVEDDRYIARELALAAREMVV 129

Query: 62  GL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
              S  E++      +P         V++  +++   +   L      +   K ++A+  
Sbjct: 130 MGSSPEEALRNSAARVPSPTYRETVEVLTKAARITQRVDLVLLARLDWMLRAKQVRAQSL 189

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
             S+      +++  +   +   +   S    + L     G + L      +LIG++
Sbjct: 190 VRSLSLMFEVFVVAVMLLPIMVYIVALS---FSPLGALQVGGLALDPLTLMVLIGLV 243


>gi|56459562|ref|YP_154843.1| Type II secretory pathway, PulF-like [Idiomarina loihiensis L2TR]
 gi|56178572|gb|AAV81294.1| Type II secretory pathway, PulF-like [Idiomarina loihiensis L2TR]
          Length = 392

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 56/157 (35%), Gaps = 9/157 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNA---LDIIVRSVRAGLPVSDAVAV-IVGQSSDPVRSEFRRVI 56
           +K L K++              L      + +GLP+S+A+   I    S  +R      I
Sbjct: 41  IKRLSKRQRKLIRPKLSLWYILLQQTASLLESGLPLSEALRHSICETKSRSLRWLIEDCI 100

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
            +   G S S +++    ++P  +++  +       +  G L++AL  L  + + +  +K
Sbjct: 101 RSIEHGFSFSRALTYYEHWLPKADINAIAWA-----EQNGQLADALQQLQELEKRQHQLK 155

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153
            ++            +   + F +   V         
Sbjct: 156 KQLTKALRYPVIVLLVAAGVCFMMMGWVLPAFAQLFG 192


>gi|148508014|gb|ABQ75813.1| transmembrane protein [uncultured haloarchaeon]
          Length = 674

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 65/184 (35%), Gaps = 7/184 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQH 60
           ++  +R  K   + P A   +    R  + + D +  +     +   V  EF+ +  + H
Sbjct: 148 YIANERKRKININLPFATTFMYAMSRGSVTIIDVIEAVAEAEDTYGQVSVEFQSIANSIH 207

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                L  +I   +   P  ++S     +      G ++     + S    +    + K 
Sbjct: 208 YSTNDLRSAIKNEIEITPSAKLSELLEDLLNIIDTGSDMDTFFLHRSETYIEESKEEQKQ 267

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
               +E  +  +I+  +   +  LV       + + +    G++L  +A   + +G  V 
Sbjct: 268 ILDQLEVLSEVYIVLFVASPIFVLVINV----VMLFLGASNGNILYALAYLAIPLGGGVF 323

Query: 180 RLMI 183
             ++
Sbjct: 324 TAIV 327



 Score = 47.8 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 60/162 (37%), Gaps = 1/162 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L ++     L   P A      S   GL +SD+  V+   S+D + S+ +  I    
Sbjct: 449 LYELQQRNKKVVLRRIPEAFSTAAESNSQGLMLSDSFDVVAKNSTDYLSSKLQVAINESR 508

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
              S   ++ R    + +  +S    +I+  ++L G++   +   ++ ++    + A+  
Sbjct: 509 WTNSFERALIRFANELEVSRLSRTIKLITKANKLTGDIQGVVKIAAKDVKLMAELDAERV 568

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM-NVLINDPRG 161
             S       ++   +  C+   +  T    + +       G
Sbjct: 569 EQSYMQIIVIFVSYLISVCIIVSLNITFIQMLGDSAFQTGSG 610


>gi|327467690|gb|EGF13187.1| bacterial type II secretion system protein F [Streptococcus
           sanguinis SK330]
          Length = 408

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/171 (10%), Positives = 50/171 (29%), Gaps = 4/171 (2%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
               L D       +   + +G+P+++AV ++  Q++        +++       S    
Sbjct: 57  KKIKLKDISLFCKQMSVMLESGIPLNNAVDILEQQATSKNLKSSLKIVSKSLKEGS---- 112

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                              +    +  G L E L  +S           +++   +    
Sbjct: 113 QLSKAMLDQEGMFPDLLIRMVQAGEKTGKLDEVLEKMSEHYNKELKTSRQIRGAMIYPAV 172

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            A++  +    +  +V  +  G              + +AA+  +     +
Sbjct: 173 LAFLAVAAVLALLYIVIPSFSGIFEQSGMAMPLPTRIVLAASNFVRSYWYI 223



 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+ +A+      +++ V  E  ++         L +           
Sbjct: 270 FASTLAILTSAGIPLVEAIESAAATTNNAVVIEKMKIANE-----GLQKGERLTGMITAT 324

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G+L   L   S    +      K     +E      +   +  
Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLVKTSDYYEEELETAIKQLLSLLEPAMIIVMGVIIGG 384

Query: 139 CVSTLVYFTS 148
            V++++    
Sbjct: 385 IVASVMLPMF 394


>gi|152991618|ref|YP_001357339.1| type II secretion system protein F [Sulfurovum sp. NBC37-1]
 gi|151423479|dbj|BAF70982.1| type II secretion system protein F [Sulfurovum sp. NBC37-1]
          Length = 404

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/183 (11%), Positives = 60/183 (32%), Gaps = 16/183 (8%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +        +   + +G+ +  A+ ++  Q  +  +      + +    +   +S+   +
Sbjct: 60  EMLATFSRELSSYLNSGMTILTAIRLLENQHENEKKYVS--FLNSIRTMIDEGKSLYHAL 117

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
               +  +  F       +   G + E L N+      +  +K +V+   +       I 
Sbjct: 118 NTQKVYALPEFFVQSLNIAGQSGKMVEVLTNMGNFFSAQNKVKKQVKGAMVYPT---VIF 174

Query: 134 GSLPFCVSTLVYFTSPGYMNVLIND-----PRGHMLLGVAAAF------MLIGIMVMRLM 182
                  S L+ F  P    +  +      P    +L ++         ++IGI+++  +
Sbjct: 175 TVAIAMTSFLIAFVVPKITGIFEDTDQKLPPITQFVLNISDFLTHYYIHLVIGIVLVIAL 234

Query: 183 INF 185
              
Sbjct: 235 FKL 237


>gi|30249579|ref|NP_841649.1| type II secretion system protein [Nitrosomonas europaea ATCC 19718]
 gi|30138942|emb|CAD85521.1| Bacterial type II secretion system protein [Nitrosomonas europaea
           ATCC 19718]
          Length = 394

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 53/153 (34%), Gaps = 6/153 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVR 74
             +    ++  + AGL + + +  +V +  D V  E  ++++     G++ S ++    +
Sbjct: 58  LSDFSQELLALLTAGLSLVEGIETLVEKEEDSVTRELLQQILARLREGVTFSRALEFYPQ 117

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
             P              S+  G+L EAL+           ++ K+   S+       + G
Sbjct: 118 VFP-----SLYVATIRASEQTGDLGEALSRYLVYQSQMDLVRKKLVGASIYPVLLLVLGG 172

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
            +   +   V          +  D     +L +
Sbjct: 173 LVAIFLLVFVVPKFSAIYEDMGTDLPWMSMLLI 205


>gi|206895309|ref|YP_002247371.1| PilG, putative [Coprothermobacter proteolyticus DSM 5265]
 gi|206737926|gb|ACI17004.1| PilG, putative [Coprothermobacter proteolyticus DSM 5265]
          Length = 421

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 57/174 (32%), Gaps = 8/174 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   + +G  + +A+ V+    ++  V      +I   + G+S+S ++  
Sbjct: 80  ERDMYFFAFNLANFIESGFNMVEALTVVKERSANKKVSKVIDHLIFYINRGVSVSGAMQL 139

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              + P          +    +  G L  AL +LS   +    +++K+    +     + 
Sbjct: 140 TGAFSP------LFVNLVRSGETSGTLPLALKDLSDFYKTMLGLRSKITNAVLYPIIISV 193

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
                       V  T  G  +++         + +  A  +     + L++  
Sbjct: 194 AAVGAIIVYMLFVLPTLGGLYDMMGAQLPAPTRIVMGIADFIKNY-WIWLIVGI 246


>gi|315606116|ref|ZP_07881147.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312398|gb|EFU60484.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 298

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 54/147 (36%), Gaps = 1/147 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R        P+  +++  +V AG  +  A+  + G +  P+ SE         
Sbjct: 143 LSIKARRRQRAIDAAVPDCAELLALAVAAGESIPAAIERVAGCAGGPLGSELALTSAHIR 202

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G     +++ +V       ++  S  ++   + G  L+  L + +R  R+R       +
Sbjct: 203 NGTPSVRALAELVERTDSPSLTRLSRTLTTAIERGSPLASVLHDQARDQRERSLASLMEE 262

Query: 121 ALSME-AKASAWIIGSLPFCVSTLVYF 146
               E A     +   LP  V   +Y 
Sbjct: 263 GGRREIAMLLPVVFLILPVTVMFALYP 289


>gi|91783015|ref|YP_558221.1| putative tight adherence TadC related transmembrane protein
           [Burkholderia xenovorans LB400]
 gi|91686969|gb|ABE30169.1| Putative tight adherence TadC related transmembrane protein
           [Burkholderia xenovorans LB400]
          Length = 337

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 61/157 (38%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           ++    KR    +D+ P  +D++      GL +  ++ V+V         +  E      
Sbjct: 174 LRRRAGKRRNGVVDELPLLVDLLRLLQGVGLSLDQSLQVVVNDFRGMLPVLAGELEIAQR 233

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S++R+      +++     ++    + GG + E L      LR+ +    
Sbjct: 234 QFTAGRTREQSLNRLATSYDNEDLRAVMRLLVQVDRHGGAVQEPLKQFGDRLRETRRAML 293

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           + +   +  K +  +I +L   +  ++    PG + V
Sbjct: 294 RERIGRLAVKMTGVMIVTLLPAL--MIVTAGPGVLAV 328


>gi|326794279|ref|YP_004312099.1| general secretion pathway protein F [Marinomonas mediterranea
           MMB-1]
 gi|326545043|gb|ADZ90263.1| general secretion pathway protein F [Marinomonas mediterranea
           MMB-1]
          Length = 400

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 40/137 (29%), Gaps = 7/137 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + AG+P+ +A++ +  Q++          I        L             
Sbjct: 66  VTRQLATLIDAGMPIEEALSGVAQQTTKQRIRSMLLAIR----SKVLEGHPLASALAEYP 121

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +             +  G L + L  L+      +  + K+Q   +       +  S+  
Sbjct: 122 KAFPILFRASIKAGEESGGLPQVLMQLADYSERVRGNQQKLQMAMLYPAILTIVAISIVV 181

Query: 139 CVSTLVYFTSPGYMNVL 155
            +   V    P  ++V 
Sbjct: 182 FLLGSVM---PDIVSVF 195


>gi|16124430|ref|NP_418994.1| general secretion pathway protein F [Caulobacter crescentus CB15]
 gi|221233113|ref|YP_002515549.1| type II secretion pathway protein F [Caulobacter crescentus NA1000]
 gi|13421294|gb|AAK22162.1| general secretion pathway protein F [Caulobacter crescentus CB15]
 gi|220962285|gb|ACL93641.1| type II secretion pathway protein F [Caulobacter crescentus NA1000]
          Length = 403

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 49/163 (30%), Gaps = 9/163 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +         + +A+  I  Q+    ++     V      G  LS+++ R  +  P
Sbjct: 69  FTRQLATLTSV-STLEEALRTIALQADKPKLKQVIGEVHAAVLEGYRLSDAMGRPAKAFP 127

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G L   L  L+ +L  ++ ++AK+    +     A +   + 
Sbjct: 128 P-----LYRAMVAAGESSGALPAILDRLADLLEQQQQVRAKITTALVYPIVLAVVACLVV 182

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA--AFMLIGIMV 178
             +   V        + +         L +         G ++
Sbjct: 183 AALMVFVIPKVVEQFDSMGQTLPLLTRLVIGLSTGLQTFGWLI 225


>gi|330820178|ref|YP_004349040.1| type II secretion system protein [Burkholderia gladioli BSR3]
 gi|327372173|gb|AEA63528.1| type II secretion system protein [Burkholderia gladioli BSR3]
          Length = 396

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 52/169 (30%), Gaps = 9/169 (5%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--PVRSEFRRVIETQHLGLS 64
           +R  +F       L  +   + AGL + +A+  + GQ       +    RV+     G  
Sbjct: 53  RRQPRF--ALALFLQELSTLLDAGLVLIEALEALHGQRDGGRQAQQVIGRVLAVMVEGQP 110

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
            S +++R     P              ++  G L E L    +     + ++ +V    +
Sbjct: 111 FSAALARQPGIFP-----ALLVATIESAEGNGQLPEVLRRYQQYEHRIEQIRKRVTGAMV 165

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
                  +   +   ++  V          L   P    L+   +  + 
Sbjct: 166 YPGVVIGVGFCILLFMAFFVIPRFSAVFEALSTLPPTARLMLAWSGLLA 214


>gi|302559125|ref|ZP_07311467.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
 gi|302476743|gb|EFL39836.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
          Length = 308

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 62/156 (39%), Gaps = 4/156 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++     +           LD++  S+  G  + +A+      S        R  +    
Sbjct: 154 VRRDAADKRRDLRRVIGAYLDLVSMSLAGGRGLPEALMAAAEVSDGWATHRIRNALADAR 213

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           +   S  +++ ++   + ++E+   S  +++ +  G  + E+LA+ +  +R R+  + + 
Sbjct: 214 ITGISQWQALGQLGEELGVEELKDLSASLALVADDGAKVRESLASRAETMRHRELSEIE- 272

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
              S   K+ + ++  L  C   LV+   P  M V 
Sbjct: 273 --GSAGEKSQSMLVAQLLLCAGFLVFLIFPAAMRVF 306


>gi|218290610|ref|ZP_03494712.1| hypothetical protein AaLAA1DRAFT_2298 [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239394|gb|EED06591.1| hypothetical protein AaLAA1DRAFT_2298 [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 278

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 64/180 (35%), Gaps = 5/180 (2%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++   ++ D    A+++    V AG  V + +     +   P+++ F R  +     L++
Sbjct: 98  ERWMIRYEDGVRQAVELGTGIVEAGGTVEEWILQGEREIEGPLQAVFARGAQQVRERLAV 157

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           ++ +       P    S+    +      GG+L      ++        ++ K + +  +
Sbjct: 158 ADWLRYTADTTPSNYWSYVCNGVLSHLDSGGDLVRFFVEVA----RELQVREKYRRVMAQ 213

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            +  A  +          +Y      ++ L+  +P   +L  VA    ++     R M  
Sbjct: 214 QRKEATQLLLAMLVSPAALYLMFRRSLDNLMQAEPFMQVLFAVALVGYVVLFWFARRMAR 273


>gi|324009018|gb|EGB78237.1| general secretion pathway protein F [Escherichia coli MS 57-2]
          Length = 398

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 60/198 (30%), Gaps = 29/198 (14%)

Query: 5   IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLG 62
           +K R  +    +       +     A LP+ +++AVI  Q S++ +     +V      G
Sbjct: 49  VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNNRLADVLNQVRSAILEG 108

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             LS+++                  +    +  G L+  L  L+    +R+ +++K+   
Sbjct: 109 HPLSDALQHFPTL-----FDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQS 163

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND-------------------PRGHM 163
            +       +       V  L+    P      ++                      G  
Sbjct: 164 LIYP---CMLTTVAIVVVIILLTVVVPKITEQFVHMKQQLPLSTRILLGLSDTLQHTGPT 220

Query: 164 LLGVAAAFMLIGIMVMRL 181
           LL       +   + ++ 
Sbjct: 221 LLATVFIVAVGFWLWLKR 238


>gi|300023663|ref|YP_003756274.1| type II secretion system F domain protein [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299525484|gb|ADJ23953.1| Type II secretion system F domain protein [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 403

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 49/165 (29%), Gaps = 6/165 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRM 72
                    +   ++AGLP+  A+  +   + S  +     RV      G SL E++   
Sbjct: 66  RQITLFTRELGMLLKAGLPLDQALTFLERDAGSKSLARLIGRVGTEISSGKSLCEALEMQ 125

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P          +   ++  G L   L  ++      + +K+   +  +       +
Sbjct: 126 GGAFPPIYSR-----MVRVAEASGTLETVLERIAAGREKAQKLKSMALSELLYPCLLILM 180

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
             +    + T+V       +              + A+  LI   
Sbjct: 181 AIAAVTIMLTVVVPRFKDMIGNAGTQIPDQARFVIGASDWLIANW 225


>gi|327310804|ref|YP_004337701.1| type II secretion system protein [Thermoproteus uzoniensis 768-20]
 gi|326947283|gb|AEA12389.1| type II secretion system protein [Thermoproteus uzoniensis 768-20]
          Length = 250

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 73/190 (38%), Gaps = 15/190 (7%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE- 67
            A+     P+AL  I  +V  GL +  A  V+      P+   FRRV+    +G + +  
Sbjct: 32  RARLESQIPDALRAIADAVSGGLDLRSAFEVVSTLGLSPIADVFRRVVALSSVGGATAPD 91

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL----ANLSRILRDRKNMKAKVQALS 123
           ++  +   + +     F+ ++   ++ G  L E L       + ++  R+++ A+++   
Sbjct: 92  ALWSVAEELGVPNFKRFALIVVEAARSGAKLPEVLGTAARTFATVVEFRRDLSAQLRPYV 151

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL---------INDPRGHMLLGVAAAFML- 173
           +   A   +  +L   +   +          +         I+ P    +L + A     
Sbjct: 152 LLYYAVVGVFAALSDVLVYFMLPRLAQLTAQVSNAAIRPATISTPDALAVLLLTAILQAL 211

Query: 174 IGIMVMRLMI 183
           +G +V+  + 
Sbjct: 212 VGGLVVGRVT 221


>gi|325678255|ref|ZP_08157883.1| type II secretion system protein F domain protein [Ruminococcus
           albus 8]
 gi|324110018|gb|EGC04206.1| type II secretion system protein F domain protein [Ruminococcus
           albus 8]
          Length = 290

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 61/149 (40%), Gaps = 1/149 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            I+K    ++ DFPNA+  I   V  G+ + +A   +   S +P+  + R V++  + G+
Sbjct: 140 KIEKMNETYMRDFPNAVSTIALLVNGGMFLREAWKQVAISSDEPLYVQMRGVVDDMNNGV 199

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAKVQAL 122
           S  +++ R       +E+  FST I+   +    +L++ L   + +L + K      Q  
Sbjct: 200 SEIDALFRFANRCSTKEIRKFSTTITQAIESDGTHLADTLIKQADLLLNEKKQMVLQQGE 259

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
               K    I       +  ++       
Sbjct: 260 KASNKLMFPIGLIFIGVLVMIMVPILSNM 288


>gi|219882751|ref|YP_002477915.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
 gi|219861757|gb|ACL42098.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
          Length = 456

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 48/151 (31%), Gaps = 7/151 (4%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           L  +   +R G   + A+ ++  Q     + E  R            +        M  +
Sbjct: 117 LRALTMVLRVGESEARALEIVGEQ---YHKYEIGRAY-EHAAKTMREDGAGFKQALMAEE 172

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
            +      +   S     L + L   + +L + +N+K ++    ++      +   L   
Sbjct: 173 VLPRTVRELIEASHTSTALQKNLQVAATLLGESQNVKKELLMNLIQPGFMMAMCIGL--- 229

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           + T V    PG+++   +       + +   
Sbjct: 230 LFTAVTVIIPGFISTFASLGAETPPMTLVIL 260



 Score = 36.3 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/137 (8%), Positives = 43/137 (31%), Gaps = 5/137 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
              ++  ++  G+    ++        +            + L   L      +  ++  
Sbjct: 320 LFQLLSANLDTGIGEPQSLKSAANGCGNEALKHHCITHAEKMLNDGLP-----LKDFIKT 374

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           + V   +  +   +       E +  L+   R+  N++ K  + +++   +  + G    
Sbjct: 375 KLVPSDARNLLGSAPSIRQEIEIMNELAPEYRNEANVQLKTLSKTLDPIINYMVYGVAGL 434

Query: 139 CVSTLVYFTSPGYMNVL 155
            +  +V      Y  ++
Sbjct: 435 LIVAIVLPMYAIYPALM 451


>gi|304396577|ref|ZP_07378458.1| Type II secretion system F domain protein [Pantoea sp. aB]
 gi|304356086|gb|EFM20452.1| Type II secretion system F domain protein [Pantoea sp. aB]
          Length = 399

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/179 (10%), Positives = 53/179 (29%), Gaps = 19/179 (10%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           + +  +   ++AGLP+++++ ++               +        LS +         
Sbjct: 63  DLIRQLATLLKAGLPLAESLVLLAEGQPHAGWRALMLALH----HRVLSGAPFSQALREW 118

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            Q        +    +L G L    + L++    ++ +  +V            +  ++ 
Sbjct: 119 PQIFPALYPSLMEVGELTGQLDVCCSELAQQQIRQQQLWHQVGKALRYPLFILLVAMAVT 178

Query: 138 FCVSTLVYFTS-----------PGYMNVLINDPRGHM----LLGVAAAFMLIGIMVMRL 181
             +   V               P +   ++           +L +  + ML G   +R 
Sbjct: 179 CGMLLFVLPEFVAVYDAFDAPLPAFTAAVMQLSAALQEWGGVLTLGVSLMLTGWHQLRR 237


>gi|269128336|ref|YP_003301706.1| type II secretion system protein [Thermomonospora curvata DSM
           43183]
 gi|268313294|gb|ACY99668.1| type II secretion system protein [Thermomonospora curvata DSM
           43183]
          Length = 304

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 64/158 (40%), Gaps = 4/158 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++    +R   F       LD++  ++  G  V +A+               R  +    
Sbjct: 150 LRQEAAQRRRDFRHVVGAFLDLVAMNLAGGRGVPEALMTAAQVGDGWAMVRIREALANAR 209

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           +   +  +++ R+   + + E+   +  +++ +  G  + ++LA  +  +R R+  + + 
Sbjct: 210 IVGQTPWQALGRLGEEVNVAELRDLAAALTLVADDGAKIRQSLAARAASMRSRELSELEG 269

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           +      ++ + +I  L FC   LV+   P  + +L+ 
Sbjct: 270 K---AGERSQSMLIAQLLFCFGFLVFLGFPALIRILVT 304


>gi|34762869|ref|ZP_00143853.1| General secretion pathway protein F [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887477|gb|EAA24563.1| General secretion pathway protein F [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 346

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 66/170 (38%), Gaps = 13/170 (7%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGL 63
           +K +  K L       + +   +++GL  + A+ +I+ +  D    E  +++ +    G 
Sbjct: 1   MKNKKEKIL----FFTNELAIMLKSGLTFTTAIEIILKEEKDKNFKEVLKKIHKNLIAGK 56

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S+ ES     R             +    ++ G+++E L ++S+ L      + K+  + 
Sbjct: 57  SIFESFKNFDRIFGN-----TYLYMLKIGEVSGSIAERLEDISKSLEFDLANQKKLGGIL 111

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           +       +I      V+ L+ F  P ++ +   +     L+     F+ 
Sbjct: 112 VYPI---VVISLTFTIVTFLLTFILPNFITIFEENQVELPLITRILLFIS 158


>gi|167834845|ref|ZP_02461728.1| general secretion pathway protein F [Burkholderia thailandensis
           MSMB43]
          Length = 216

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 49/148 (33%), Gaps = 6/148 (4%)

Query: 36  AVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQL 94
           A+AV+  Q+  D +R     +      G SL+ ++++  R     +       +    + 
Sbjct: 1   ALAVLTEQAERDYIRELMAAIRAEVLGGHSLANALAQHPR-----DFPEIYRALVAAGEH 55

Query: 95  GGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
            G L   L+ L+  + +R  +K K+            I   +   + + V          
Sbjct: 56  TGKLGIVLSRLADYIEERNALKQKILLAFTYPAIVTVIAFGIVTFLLSYVVPQVVNVFAS 115

Query: 155 LINDPRGHMLLGVAAAFMLIGIMVMRLM 182
                    ++ +A +  +       L+
Sbjct: 116 TKQQLPLLTIVMMALSDFVRHWWWAILI 143


>gi|330465239|ref|YP_004402982.1| hypothetical protein VAB18032_06290 [Verrucosispora maris
           AB-18-032]
 gi|328808210|gb|AEB42382.1| hypothetical protein VAB18032_06290 [Verrucosispora maris
           AB-18-032]
          Length = 422

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 72/201 (35%), Gaps = 29/201 (14%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVS---DAV----------AVIVGQSSDPVRS 50
            ++ R  +        L  +   +RAGLPV    +A+            +   ++ P   
Sbjct: 221 RVRARRERLDQ-----LCALAADLRAGLPVPVAAEALGLVRSVSTVRRELAASATGPTAR 275

Query: 51  EFR---------RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEA 101
             R          V         LSES  R+       +++     + +  + G  L++ 
Sbjct: 276 AQRPDKPVLPDPVVPGNSTSTGDLSESAGRLAAPDRPGQLAQ--AAVRLADRTGAPLADL 333

Query: 102 LANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           +  +    R      A   A +  A+A+AW++ +LP     L Y      + VL++ P G
Sbjct: 334 IERIEADARSADRAVAAAAAQAAGARATAWLLAALPLGGIALGYGIGADPLQVLLHTPIG 393

Query: 162 HMLLGVAAAFMLIGIMVMRLM 182
                 A A  ++G++    +
Sbjct: 394 GACAVTAIALQVVGLLWADRL 414


>gi|218677457|ref|ZP_03525354.1| probable pilus assembly protein [Rhizobium etli CIAT 894]
          Length = 67

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/66 (65%), Positives = 54/66 (81%)

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           LSMEAKASA IIG+LPF V+TLVY TSP YM +L  DPRGH+++G++  +M IGI VMR 
Sbjct: 2   LSMEAKASAVIIGALPFIVATLVYLTSPNYMMILFTDPRGHLIMGISGIWMSIGIFVMRN 61

Query: 182 MINFDV 187
           M+NFD+
Sbjct: 62  MVNFDI 67


>gi|119714031|ref|YP_919173.1| integral membrane protein [Nocardioides sp. JS614]
 gi|119525940|gb|ABL79310.1| integral membrane protein [Nocardioides sp. JS614]
          Length = 302

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 54/147 (36%), Gaps = 1/147 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++    KR  +  D   + LD++V S+  G   +DA+  +    +          I+   
Sbjct: 148 LRETAGKRREELCDALSDFLDLVVMSMEGGRSHADALPTVAQIGTGWAFHTIYDAIDNAR 207

Query: 61  -LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G++  E++  +     + E+      +++    G ++   L   ++ +RD +   A  
Sbjct: 208 PNGMTPWEALGEVGERFGVVELLDLRASLNLAQDEGTSIRNTLIARAQSMRDARLADAHA 267

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146
           +A          ++       + ++  
Sbjct: 268 RANKSTDAMRNNLMVMALVAAAYVILA 294


>gi|162146307|ref|YP_001600766.1| general secretion pathway protein F [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209543690|ref|YP_002275919.1| type II secretion system protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|22128724|gb|AAM92869.1| LsdF [Gluconacetobacter diazotrophicus]
 gi|161784882|emb|CAP54425.1| putative general secretion pathway protein F [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531367|gb|ACI51304.1| type II secretion system protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 409

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/146 (9%), Positives = 41/146 (28%), Gaps = 7/146 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + AG  +  A+  +V              +  +        +          
Sbjct: 75  LTRELAVMLGAGQDIDRALRFLVESVPGARARAVLGGVRDRVRDGQTLHA----AMARYP 130

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +   ++ GG+L+  +  L+ +L   + + A VQ+  +       +  +   
Sbjct: 131 GSFPRLYIGMVRAAEAGGDLAPTMDRLATLLERERALAATVQSAMIYP---CILTLAACG 187

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHML 164
            +  L+    P +  +   +      
Sbjct: 188 SIVLLLTEVLPQFTPLFAQNGAELPA 213


>gi|188532947|ref|YP_001906744.1| type IV pilin biogenesis protein [Erwinia tasmaniensis Et1/99]
 gi|188027989|emb|CAO95846.1| Putative outer membrane protein export (MTB) system [Erwinia
           tasmaniensis Et1/99]
          Length = 399

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/152 (11%), Positives = 43/152 (28%), Gaps = 6/152 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMP 77
               +   ++AGLP+   + ++     +         + +    G   S+++       P
Sbjct: 64  FFRQLATLLKAGLPLPGCLQLLADGHPEAGWQALLLNLHQRISAGEPFSQALREWPDIFP 123

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +L G+L E    L+     ++ ++ KVQ           +   + 
Sbjct: 124 P-----LFPALVHIGELTGDLDECCLQLAIQQEQQQQLQHKVQKALRYPLFIIAVALLVS 178

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
             +   V                G     +A 
Sbjct: 179 IGMLVFVLPEFVAIYRSFNAPLPGFTKAVIAF 210


>gi|256027601|ref|ZP_05441435.1| general secretion pathway protein F [Fusobacterium sp. D11]
 gi|289765560|ref|ZP_06524938.1| general secretion pathway protein F [Fusobacterium sp. D11]
 gi|289717115|gb|EFD81127.1| general secretion pathway protein F [Fusobacterium sp. D11]
          Length = 346

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 66/170 (38%), Gaps = 13/170 (7%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGL 63
           +K +  K L       + +   +++GL  + A+ +I+ +  +    E  +++ +    G 
Sbjct: 1   MKNKKEKIL----FFTNELAIMLKSGLTFTAAIEIILREEKEKNFKEVLKKIHKNLIAGK 56

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S+ E+     +             +    ++ G+++E L ++SR L      + K+  + 
Sbjct: 57  SIFETFKNFDKIFGN-----TYLYMLKIGEVSGSITERLEDISRSLEFDLANQKKLGGIL 111

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           +       +I      V+ L+ F  P ++ +   +     L+     F+ 
Sbjct: 112 VYPI---VVISLTLIIVTFLLTFILPNFITIFEENQVELPLITRILLFIS 158


>gi|313888017|ref|ZP_07821695.1| type II secretion system F domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845972|gb|EFR33355.1| type II secretion system F domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 389

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/189 (11%), Positives = 63/189 (33%), Gaps = 21/189 (11%)

Query: 9   TAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
             KF  +D       +   + +G+ + +A  ++  Q +         + ++   G  LS+
Sbjct: 53  KKKFKNEDLYILFRQLSLFINSGINIENAFEILSSQFAKDKGKILSDIRDSLRSGSDLSD 112

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           S+         +        +    +   +L +    LS     ++  ++K+        
Sbjct: 113 SMK------MTRAFPSLVINMVYVGENTSSLGKIFDKLSDYYIKKRKTQSKIIEAMAYP- 165

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-----------AFMLIGI 176
               ++ +  F ++ L+    P +  +  ++     L                 F+++GI
Sbjct: 166 --CILLLTSIFIINFLIINVIPSFGEIFSDNNNLLPLPTRVLMGFSNFVYKNYFFIILGI 223

Query: 177 MVMRLMINF 185
           +++  +   
Sbjct: 224 LLVVAIAFI 232


>gi|53723518|ref|YP_102952.1| hypothetical protein BMA1286 [Burkholderia mallei ATCC 23344]
 gi|76808991|ref|YP_333345.1| hypothetical protein BURPS1710b_1946 [Burkholderia pseudomallei
           1710b]
 gi|121599511|ref|YP_993094.1| type II secretion system protein [Burkholderia mallei SAVP1]
 gi|124383879|ref|YP_001026129.1| hypothetical protein BMA10229_A0121 [Burkholderia mallei NCTC
           10229]
 gi|126450979|ref|YP_001080599.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
 gi|126452133|ref|YP_001066062.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
 gi|242317541|ref|ZP_04816557.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
 gi|254178228|ref|ZP_04884883.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
 gi|254206225|ref|ZP_04912577.1| type II secretion system protein [Burkholderia mallei JHU]
 gi|254261112|ref|ZP_04952166.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
 gi|254297789|ref|ZP_04965242.1| type II secretion system protein [Burkholderia pseudomallei 406e]
 gi|52426941|gb|AAU47534.1| membrane protein, putative [Burkholderia mallei ATCC 23344]
 gi|76578444|gb|ABA47919.1| membrane protein, putative [Burkholderia pseudomallei 1710b]
 gi|121228321|gb|ABM50839.1| type II secretion system protein [Burkholderia mallei SAVP1]
 gi|124291899|gb|ABN01168.1| putative membrane protein [Burkholderia mallei NCTC 10229]
 gi|126225775|gb|ABN89315.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
 gi|126243849|gb|ABO06942.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
 gi|147753668|gb|EDK60733.1| type II secretion system protein [Burkholderia mallei JHU]
 gi|157807302|gb|EDO84472.1| type II secretion system protein [Burkholderia pseudomallei 406e]
 gi|160699267|gb|EDP89237.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
 gi|242140780|gb|EES27182.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
 gi|254219801|gb|EET09185.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
          Length = 336

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66
              +D+ P  +D++      GL +  ++ V+          + SE          G +  
Sbjct: 182 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 241

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+ R+      +++     ++    + GG + E L      LR+ +    + +   +  
Sbjct: 242 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 301

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           K +  +I +L   +   +    PG + V
Sbjct: 302 KMTGVMILTLLPALF--IVTAGPGMLAV 327


>gi|292655314|ref|YP_003535211.1| type IV pilus biogenesis complex membrane subunit [Haloferax
           volcanii DS2]
 gi|291371306|gb|ADE03533.1| type IV pilus biogenesis complex membrane subunit [Haloferax
           volcanii DS2]
          Length = 680

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 56/178 (31%), Gaps = 9/178 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLP---VSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
              R  +      +A+  +      GL    + +A+A     +   V  EF+ +++    
Sbjct: 145 ASARKREINMLLSDAVSFMYALSVGGLNQLEILEAMAR-AEDTYGEVSREFQSIVQETEY 203

Query: 62  GL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                  +I +     P  E+S F T +      GG++   L +           + +  
Sbjct: 204 FGTDYRNAIRQQALLTPSDELSQFLTDMLSIVNSGGDMQGFLDDKKDKHLRTAKQQQEQT 263

Query: 121 ALSMEAKASAWII----GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
             +ME     ++       L   +  ++         +L     G + L      +L+
Sbjct: 264 LETMELFGEMYMTLSLFPLLLIIILVIMSMLGEAQSRLLYATVYGLIPLTGVGFLVLV 321


>gi|294792016|ref|ZP_06757164.1| putative bacterial type II secretion system protein F domain
           protein [Veillonella sp. 6_1_27]
 gi|294457246|gb|EFG25608.1| putative bacterial type II secretion system protein F domain
           protein [Veillonella sp. 6_1_27]
          Length = 390

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 56/159 (35%), Gaps = 13/159 (8%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           +    +   + +G+P+  A+ ++            +RV+    L  S+    + + + + 
Sbjct: 60  DVTYQLGLLIESGVPLRRALQLLCQ---------GKRVLLYTALYESIERGQT-LSQALR 109

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +     +  +    +  G L E+L  +SR     + +K KV +         +++  + 
Sbjct: 110 SEGCPPIALALLESGEAAGTLGESLQYISRHYDWERQLKQKVMSAISYPL---FLLLMMN 166

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
                 + F  P +  V         L+  A   +  G+
Sbjct: 167 IFFLVTILFIIPSFEKVFTTMHITLPLMTRALFALGQGL 205


>gi|88604392|ref|YP_504570.1| type II secretion system protein [Methanospirillum hungatei JF-1]
 gi|88189854|gb|ABD42851.1| type II secretion system protein [Methanospirillum hungatei JF-1]
          Length = 296

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/179 (11%), Positives = 57/179 (31%), Gaps = 5/179 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRSEFRRVIETQHLGLSL 65
           R        P A++ +     AG+  ++    +   +   +        ++E    G  L
Sbjct: 115 RRRDIETTLPYAINYLAAMSTAGITPAEVFRQLGNSTIYGESSVEARYIILEVDVFGRDL 174

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E++  +    P   +  F          G N+S+     +           K    ++ 
Sbjct: 175 IEALKNVSMSTPSPRMRDFLQGCIGSVAAGSNISDYFRTKAEQYTGENRQTQKQFLDTLA 234

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
             A +++   +   +  ++       M +L  +     L  +    +  G ++  ++I+
Sbjct: 235 LIAESYVTALVAGTLFMILI---QSIMAILSGESTPLFLYIIIYLIIPFGSVMFVVLID 290


>gi|322831065|ref|YP_004211092.1| general secretion pathway protein F [Rahnella sp. Y9602]
 gi|321166266|gb|ADW71965.1| general secretion pathway protein F [Rahnella sp. Y9602]
          Length = 405

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 51/174 (29%), Gaps = 6/174 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
                     +     A LPV  A+AVI  Q+    +      V      G +L++++S 
Sbjct: 65  SHAISLFSRQLATLTNAALPVEAALAVIARQTEHAGLTQVLTAVRNKVVEGHTLADALSD 124

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             R             +    +  G L   L  ++     R+ +K+K+    +       
Sbjct: 125 FPRLFDP-----MFRTLVTAGERTGQLGTVLEKMADYYEIRQQIKSKLSQAMIYPAMLTI 179

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           I   +   +   V          + +       + +  +  L     +  ++  
Sbjct: 180 IAILVIVILLVAVVPQIIEQFVHMKHTLPISTRILIGVSGFLERTWWVIAIVVI 233


>gi|292489336|ref|YP_003532223.1| type II secretion system protein OutF [Erwinia amylovora CFBP1430]
 gi|292898440|ref|YP_003537809.1| type II secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291198288|emb|CBJ45394.1| type II secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291554770|emb|CBA22572.1| Type II secretion system protein outF [Erwinia amylovora CFBP1430]
 gi|312173501|emb|CBX81755.1| Type II secretion system protein outF [Erwinia amylovora ATCC
           BAA-2158]
          Length = 401

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 48/179 (26%), Gaps = 20/179 (11%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   V A LP+  A+  +  Q++ P        I  +     L  +       +  
Sbjct: 67  MTRQLATLVGAALPLEQALLALEKQTTKPAGRTMLHAIRQKV----LEGASLADAVGLYP 122

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G L   L  L+      + +K K+    +       +  S+  
Sbjct: 123 ATFPPLYQAMIAAGEASGKLDNVLEQLADYSEKTQQIKGKLTQSMIYPLLLTLVAISVIT 182

Query: 139 CVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVMRL 181
            + T V  +       +                I    G  +L V         +++R 
Sbjct: 183 ILLTAVVPSVVEQFVHMKQALPLSTRLLMSISEITRAIGLPVLLVILLAGFCARIILRR 241


>gi|281354923|ref|ZP_06241417.1| Type II secretion system F domain protein [Victivallis vadensis
           ATCC BAA-548]
 gi|281317803|gb|EFB01823.1| Type II secretion system F domain protein [Victivallis vadensis
           ATCC BAA-548]
          Length = 400

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 58/162 (35%), Gaps = 4/162 (2%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                +   + A +P+  ++A+I   +SD    E R +  T   GL   +  S +VR   
Sbjct: 66  EFTSQLAPLLSANIPLERSLAIISESASD---DELRDLANTLRQGLHEGKKFSDLVRSYG 122

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                 F   +    +  G L E +  L R + + K M+  V + S+       I   + 
Sbjct: 123 -SVFPGFYANLIETGEETGCLPEVVEELQRFMSESKEMREFVVSSSIYPAVVLSITVMVA 181

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             + T+           +  +  G M+     + +++    +
Sbjct: 182 ILMFTVFVPRFAQIFADMGREQPGSMVFLTTVSTVIMHACWI 223


>gi|225414583|ref|ZP_03761772.1| hypothetical protein CLOSTASPAR_05806 [Clostridium asparagiforme
           DSM 15981]
 gi|225041899|gb|EEG52145.1| hypothetical protein CLOSTASPAR_05806 [Clostridium asparagiforme
           DSM 15981]
          Length = 403

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 52/162 (32%), Gaps = 7/162 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
                        + AG+P++  V +I GQS D  ++     V      G  L++S    
Sbjct: 64  KALSMVCSQFSVILAAGMPIAKCVGLIAGQSEDKRLKRILSNVARDVAAGYGLADSFETA 123

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +      +           +  G L  +  +LS     R   K KV A          I
Sbjct: 124 GKG----VLPLTFIETVRSGEQSGTLENSFESLSGFYERRYKTKQKVSAALTYPVFVMII 179

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFM 172
              +   V   V  T  G  + L  D  P    L+ V+A F 
Sbjct: 180 AVVVMIVVMVKVIPTVSGIFDELGGDMPPSTKALISVSAFFQ 221



 Score = 39.3 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 43/140 (30%), Gaps = 5/140 (3%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
               L+      + +   + AGLPV+ A+AV      + + S     +ET  +   L E 
Sbjct: 263 KISMLNASSQFANTMSTLLGAGLPVARALAVTAKTLDNYMLS-----LETSKMVTGLEEG 317

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                              + V  +  G L E L  + R   +      +     +E   
Sbjct: 318 RHLGTCMKECGCYPQTLNDMCVIGEETGELEETLKTIGRYFDNEAEHATQKALSKLEPAI 377

Query: 129 SAWIIGSLPFCVSTLVYFTS 148
              I G   F V ++     
Sbjct: 378 LVLIAGIAGFIVISIYLPIF 397


>gi|282165240|ref|YP_003357625.1| hypothetical protein MCP_2570 [Methanocella paludicola SANAE]
 gi|282157554|dbj|BAI62642.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 296

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 46/140 (32%), Gaps = 1/140 (0%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSES 68
           A+     P     +   V+A   +  A+  +       +  E  R++         ++ +
Sbjct: 75  AEVEAKAPELFYDLSEQVKASGSIVKALKRVSRHEYGTISDEVCRMLSEIEEEGYDIASA 134

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           +  M      + V    +VI        NL   L  ++   R  +++K + QA    +  
Sbjct: 135 LRAMALRTKNRYVDRSVSVIIEALTTSSNLESILKAVASEGRLAQSLKKERQAGISSSVF 194

Query: 129 SAWIIGSLPFCVSTLVYFTS 148
             +    +   V+ L   + 
Sbjct: 195 VIYFTAIIFLAVTMLCITSF 214


>gi|4680725|gb|AAA91205.2| VvpC [Vibrio vulnificus]
          Length = 409

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/129 (11%), Positives = 43/129 (33%), Gaps = 6/129 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   +  G+P+  ++ ++        ++S    V +    G  LS+++   
Sbjct: 68  KDITLLTRQLATMLTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTLLSKALRSA 127

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                  +       +    +  GNL +    L+      + ++AKV    + +     +
Sbjct: 128 S-----PQFDGIYVDLVATGEQSGNLDQVFERLAFYREKNEQLRAKVIKALIYSCMVVLV 182

Query: 133 IGSLPFCVS 141
              + + + 
Sbjct: 183 ALGVSYLML 191



 Score = 35.9 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/136 (8%), Positives = 37/136 (27%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
                    +  S  AG+P+  ++      + +   +     V      G+ +  ++   
Sbjct: 273 AAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAAGMPMYIAMRN- 331

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          + +  +  G + + L  ++ I     +         +E     ++
Sbjct: 332 -----SLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFL 386

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V+ +     
Sbjct: 387 GVVVGGLVTAMYLPIF 402


>gi|251767749|ref|ZP_02268267.2| type II secretion system protein [Burkholderia mallei PRL-20]
 gi|254188637|ref|ZP_04895148.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|157936316|gb|EDO91986.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|243061818|gb|EES44004.1| type II secretion system protein [Burkholderia mallei PRL-20]
          Length = 339

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66
              +D+ P  +D++      GL +  ++ V+          + SE          G +  
Sbjct: 185 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 244

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+ R+      +++     ++    + GG + E L      LR+ +    + +   +  
Sbjct: 245 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 304

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           K +  +I +L   +   +    PG + V
Sbjct: 305 KMTGVMILTLLPALF--IVTAGPGMLAV 330


>gi|329121629|ref|ZP_08250250.1| type IV pilus assembly protein [Dialister micraerophilus DSM 19965]
 gi|327468784|gb|EGF14261.1| type IV pilus assembly protein [Dialister micraerophilus DSM 19965]
          Length = 392

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 43/137 (31%), Gaps = 6/137 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
                   + +GL V + + ++     +      R++  +   G S+SES+ +       
Sbjct: 65  FASEWASLIESGLSVIETLDILEMNRKEKEIKVIRKIKNSITSGFSISESLEKTS----- 119

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
            E   F   +    +  G L   L   +   +    M+ K+  L             + +
Sbjct: 120 -EFPSFFISMVKIGEATGTLPLQLETAADYYKKEHKMRKKLTELFAYPVTVLIFSLIVLY 178

Query: 139 CVSTLVYFTSPGYMNVL 155
            + TLV          +
Sbjct: 179 VIMTLVIPVFYELYQSM 195


>gi|283782634|ref|YP_003373388.1| hypothetical protein HMPREF0424_0121 [Gardnerella vaginalis 409-05]
 gi|283441234|gb|ADB13700.1| conserved domain protein [Gardnerella vaginalis 409-05]
          Length = 191

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 60/181 (33%), Gaps = 13/181 (7%)

Query: 15  DFPNALDIIVRSVRAGLPVS----------DAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           D    L  ++ ++R+G   +            +      +    +  + R    +    +
Sbjct: 2   DIEEVLAGMIAALRSGSTFAMIVHSDSKSQQCICSNAVNTKIIYKWLYERCFPKKR---N 58

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           ++++  R +                + + LG  ++E +   +     +K  +     ++ 
Sbjct: 59  MNKTQRRQLEKHMHTVSESLMASYELSNTLGCVMAECVEATAASYHAQKRAEDLRADVAA 118

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
             KA+  ++ +LP              + +LI    G +LL +      +G+  +  M+ 
Sbjct: 119 MPKATIKLLTALPILALFAGELLGGHPILMLITTVNGWILLTIGGICYGLGLAWVSSMLQ 178

Query: 185 F 185
            
Sbjct: 179 I 179


>gi|226196329|ref|ZP_03791911.1| type II secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|225931546|gb|EEH27551.1| type II secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
          Length = 338

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66
              +D+ P  +D++      GL +  ++ V+          + SE          G +  
Sbjct: 184 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 243

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+ R+      +++     ++    + GG + E L      LR+ +    + +   +  
Sbjct: 244 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 303

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           K +  +I +L   +   +    PG + V
Sbjct: 304 KMTGVMILTLLPALF--IVTAGPGMLAV 329


>gi|126442067|ref|YP_001058811.1| type II secretion system protein [Burkholderia pseudomallei 668]
 gi|134282402|ref|ZP_01769107.1| type II secretion system protein [Burkholderia pseudomallei 305]
 gi|126221560|gb|ABN85066.1| type II secretion system protein [Burkholderia pseudomallei 668]
 gi|134246440|gb|EBA46529.1| type II secretion system protein [Burkholderia pseudomallei 305]
          Length = 340

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66
              +D+ P  +D++      GL +  ++ V+          + SE          G +  
Sbjct: 186 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 245

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+ R+      +++     ++    + GG + E L      LR+ +    + +   +  
Sbjct: 246 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 305

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           K +  +I +L   +   +    PG + V
Sbjct: 306 KMTGVMILTLLPALF--IVTAGPGMLAV 331


>gi|310826271|ref|YP_003958628.1| Tfp pilus biogenesis protein PilC [Eubacterium limosum KIST612]
 gi|308738005|gb|ADO35665.1| Tfp pilus biogenesis protein PilC [Eubacterium limosum KIST612]
          Length = 362

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/168 (11%), Positives = 55/168 (32%), Gaps = 8/168 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRM 72
                    +  ++ AG+ + DA+ +   +  +    E   +V      G S SE++   
Sbjct: 20  RMLGLFCRQMAITLSAGVSIIDALELSGREHKNSGFGEAVLQVKILVKHGNSFSEALRSF 79

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +  P          +    ++ G +   + NL      + ++++++            +
Sbjct: 80  PKVFP-----ELMVQMVRSGEMSGCMDLVMENLGIYYEGQADLRSRIAQAFFYPSLVMVV 134

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMV 178
              +   +   V          +  +      +L+GV+ A +  G  +
Sbjct: 135 AVGVVMYLMAGVLPVFVEIFESMEAELPLTTEILMGVSTALISSGGWI 182


>gi|154151893|ref|YP_001405511.1| type II secretion system protein [Candidatus Methanoregula boonei
           6A8]
 gi|154000445|gb|ABS56868.1| type II secretion system protein [Methanoregula boonei 6A8]
          Length = 652

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 68/168 (40%), Gaps = 5/168 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           +        P+ L+ +    R GL ++ A+ ++V  +   +  E RR+      G + SE
Sbjct: 423 KVKGIQSMIPDFLERMAGINRVGLTIAQAIGIMVNTNLGLLSYEIRRIKRDMDWGANFSE 482

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++ R  + +    ++   T+I+  S++ G + E LA  +   +  + +K +      E  
Sbjct: 483 ALMRFEQRISTASIARTVTLITKASEMTGQIGEVLAIAASDAKMSETLKKER---LAEMF 539

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
               I+    F    +V   S  ++ VL +   G   +  +     +G
Sbjct: 540 IYTAIVYLSFFVFLFVVAVLSTQFLPVLAH--IGTAGISGSGPLSGLG 585



 Score = 41.3 bits (95), Expect = 0.067,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 66/179 (36%), Gaps = 8/179 (4%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAG---LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL- 63
           R+ K      NA+  +    R G   + +  A++         V  EFR++         
Sbjct: 125 RSIKINLTLHNAVAYMYAMRRGGAELMSIFYALSENAP-IYGEVALEFRQITRDVDYFGS 183

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +  ++  +    P  ++  F   +    + GG+LSE LA+  R+ ++    + K     
Sbjct: 184 DMLTAMRHLSSTTPSAKLKDFLEDLLSVIESGGDLSEFLASRVRLYQEEARFEQKQFLTL 243

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           +   A +++   +   +  ++       M ++       + L V A   +   + + L+
Sbjct: 244 LSMVAESYVTLFVAGPLFLIIIMVV---MGMMGGSAVLQLSLVVYAIMPIGSFIFILLI 299


>gi|126640447|ref|YP_001083431.1| general secretion pathway protein F [Acinetobacter baumannii ATCC
           17978]
          Length = 333

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 10/152 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   V A +P+ +A+  +  QS    V++    V      G SL++ + +  R+  
Sbjct: 1   MTRQLSVLVAAAIPLEEALRAVSRQSEKAHVQNLLLSVRSKVLEGHSLAQGMQQSGRFPD 60

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                          +  G+L   L  LS    +R  M+ KVQ   +       +   + 
Sbjct: 61  ------LYIATVAAGERSGHLDLILDQLSDYTENRFAMQKKVQGAMIYPIILMLMSFGI- 113

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
             V  L+ +  P  +            + VA 
Sbjct: 114 --VMGLMTYVVPEIVKTFDQSKDALPWITVAL 143


>gi|325107203|ref|YP_004268271.1| type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324967471|gb|ADY58249.1| Type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 345

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/178 (10%), Positives = 47/178 (26%), Gaps = 14/178 (7%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                    +   + +G+    A  +      S  +R     +++    G  ++ S+   
Sbjct: 9   KSLALMCRSLSTLLDSGVAADKAFRIAGEKSGSATIRETSASIVDEIKRGNDIATSLEE- 67

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 Q        +   ++  G L E L  L+    +   ++               +
Sbjct: 68  -----QQVYPALMVSMVHVAEQTGTLPEILRGLADHYENLVRLRKDFYQAISWPVIQLVL 122

Query: 133 IGSLPFCVSTLVYFTS----PGYMNVLINDPRGHMLLGVAAAFMLIG---IMVMRLMI 183
              +   +  L+   +       ++VL     G          +  G     +   M+
Sbjct: 123 AVFVIAGLIFLLGMIADSNQSEPIDVLGWGLTGTSGALTWLGLVFGGAFSFFICYRML 180


>gi|289625308|ref|ZP_06458262.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647833|ref|ZP_06479176.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330867142|gb|EGH01851.1| type II secretion system, protein F domain [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330871030|gb|EGH05739.1| type II secretion system, protein F domain [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 294

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 67/157 (42%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           +  + ++R  + + +    + ++     +G+ V  A+ V+          +  E R V+ 
Sbjct: 134 LAAVAQRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSLEGKDLLPVLSEEIRVVLV 193

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL L E + +    + + E+S    +++     GG   ++L  L +++ DR+  + 
Sbjct: 194 RVDSGLELGEELRKTAALLAVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 253

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +     + AK S  ++  L   +  ++    PG++ +
Sbjct: 254 QEYISKLSAKMSVVMMVFLFPALLIVL--AGPGFIAI 288


>gi|239625545|ref|ZP_04668576.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519775|gb|EEQ59641.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 352

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/142 (7%), Positives = 40/142 (28%), Gaps = 5/142 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            +       +   + + +P+ + +A++   ++D    +    +                 
Sbjct: 14  RELAAFCLQVSLLLESAVPLDEGLAIMAEDAADKKEKDMLLYMAEGVELGDP-----FFK 68

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +    +   ++   Q  G + + + +LS        +   ++           ++
Sbjct: 69  VLEDTKVFPDYVVKMAKLGQSTGTMDQMMKSLSVYYEKEYRLIQAIKNAVTYPVMMVIML 128

Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155
             + F + T V          L
Sbjct: 129 LVVLFVLFTRVMPVFNKVYEQL 150


>gi|315037963|ref|YP_004031531.1| Competence protein [Lactobacillus amylovorus GRL 1112]
 gi|312276096|gb|ADQ58736.1| Competence protein [Lactobacillus amylovorus GRL 1112]
          Length = 333

 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/173 (12%), Positives = 61/173 (35%), Gaps = 14/173 (8%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            +     LD +  S+  G  + +++ +        + + + +  E         +  +  
Sbjct: 15  EEQLA-FLDYLKHSLDNGFSLINSIEL--------MPALWPKRKELMRKLAMRMKEGANF 65

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +     S  +      +   GNL+E L  L+ + R ++    K+++        A +
Sbjct: 66  SSELVKLGFSKTTVTQVNLALQQGNLTECLNQLATLNRLKQEQVKKLRSELSYPFVLAIM 125

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           +  L   + + +            ++  G +++ V    +L+GI  +  ++  
Sbjct: 126 MVVLLVFMQSFISTQFSD-----TSEHSGDLVMLVLIGLVLVGIYFLAKIVTL 173


>gi|53719505|ref|YP_108491.1| putative outer-membrane protein [Burkholderia pseudomallei K96243]
 gi|52209919|emb|CAH35891.1| putative outer-membrane protein [Burkholderia pseudomallei K96243]
          Length = 341

 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66
              +D+ P  +D++      GL +  ++ V+          + SE          G +  
Sbjct: 187 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 246

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+ R+      +++     ++    + GG + E L      LR+ +    + +   +  
Sbjct: 247 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 306

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           K +  +I +L   +   +    PG + V
Sbjct: 307 KMTGVMILTLLPALF--IVTAGPGMLAV 332


>gi|309389143|gb|ADO77023.1| Type II secretion system F domain protein [Halanaerobium praevalens
           DSM 2228]
          Length = 343

 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/150 (8%), Positives = 45/150 (30%), Gaps = 5/150 (3%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
            +   +++GL ++  + ++  QS     +E        +L  ++   ++        +  
Sbjct: 14  QLKIMLQSGLSLNRTLLIMAQQSRSEREAEIY-----SNLLKNIESGLTLASALKEEKIF 68

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 I    +  G+L   L +L    + +  +K +++            +    F + 
Sbjct: 69  KDLFIEIVRAGEKSGSLVSVLTSLEEYYKSKNELKKEIKKACFYPLTVIITLILAAFFIF 128

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
             +                    + ++ + 
Sbjct: 129 KFILPVFVDLFAEFNGQLPFLTRILLSLSL 158


>gi|291303313|ref|YP_003514591.1| hypothetical protein Snas_5869 [Stackebrandtia nassauensis DSM
           44728]
 gi|290572533|gb|ADD45498.1| hypothetical protein Snas_5869 [Stackebrandtia nassauensis DSM
           44728]
          Length = 242

 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 46/146 (31%)

Query: 38  AVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN 97
                Q+   + ++ R          +    ++     +  +        + +    G  
Sbjct: 88  RATARQAVASLAADLRAGANAAPAIAATRTHLAATDDPVCRRIRDRLDATVHITETAGAP 147

Query: 98  LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
            S  L  L+  LR    +   +   +    ASA ++ +LP     L        +  L++
Sbjct: 148 TSRLLDQLAEDLRAEARIATTLTTNTAGILASARLLAALPVAGLALGQALGTRPLETLLH 207

Query: 158 DPRGHMLLGVAAAFMLIGIMVMRLMI 183
            P G     VA    L G+   R ++
Sbjct: 208 TPVGAGCAAVAVTLQLAGLAWSRRIL 233


>gi|237743190|ref|ZP_04573671.1| general secretion pathway protein F [Fusobacterium sp. 7_1]
 gi|229433486|gb|EEO43698.1| general secretion pathway protein F [Fusobacterium sp. 7_1]
          Length = 346

 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 65/170 (38%), Gaps = 13/170 (7%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGL 63
           +K +  K L       + +   +++GL  + A+ +I+ +  D    E  R + +    G 
Sbjct: 1   MKNKKEKIL----FFTNELAIMLKSGLTFTTAIEIILKEEKDKNFKEVLRKIHKNLIAGK 56

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S+ ES     +             +    ++ G+++E L ++SR L      + K+  + 
Sbjct: 57  SIFESFKNFDKIFGN-----TYLYMLKIGEVSGSITERLEDISRSLEFDLANQKKLGGIL 111

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           +       +I      V+ L+ F  P ++ +   +     L+     F+ 
Sbjct: 112 VYPI---VVISLTLIIVTFLLTFILPNFITIFEENQVELPLITRILLFIS 158


>gi|217423679|ref|ZP_03455180.1| type II secretion system protein [Burkholderia pseudomallei 576]
 gi|217393537|gb|EEC33558.1| type II secretion system protein [Burkholderia pseudomallei 576]
          Length = 336

 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66
              +D+ P  +D++      GL +  ++ V+          + SE          G +  
Sbjct: 182 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 241

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+ R+      +++     ++    + GG + E L      LR+ +    + +   +  
Sbjct: 242 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 301

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           K +  +I +L   +   +    PG + V
Sbjct: 302 KMTGVMILTLLPALF--IVTAGPGMLAV 327


>gi|254179954|ref|ZP_04886553.1| type II secretion system protein [Burkholderia pseudomallei 1655]
 gi|184210494|gb|EDU07537.1| type II secretion system protein [Burkholderia pseudomallei 1655]
          Length = 340

 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66
              +D+ P  +D++      GL +  ++ V+          + SE          G +  
Sbjct: 186 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 245

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+ R+      +++     ++    + GG + E L      LR+ +    + +   +  
Sbjct: 246 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 305

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           K +  +I +L   +   +    PG + V
Sbjct: 306 KMTGVMILTLLPALF--IVTAGPGMLAV 331


>gi|71733529|ref|YP_276554.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257483343|ref|ZP_05637384.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|298488955|ref|ZP_07006978.1| Type II/IV secretion system protein TadC, associated with Flp pilus
           assembly [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|71554082|gb|AAZ33293.1| type II secretion system protein F domain protein [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|298156453|gb|EFH97550.1| Type II/IV secretion system protein TadC, associated with Flp pilus
           assembly [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|320322734|gb|EFW78827.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330481|gb|EFW86460.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330887979|gb|EGH20640.1| type II secretion system, protein F domain [Pseudomonas syringae
           pv. mori str. 301020]
 gi|330989172|gb|EGH87275.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331012562|gb|EGH92618.1| type II secretion system protein, F domain [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 294

 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 67/157 (42%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           +  + ++R  + + +    + ++     +G+ V  A+ V+          +  E R V+ 
Sbjct: 134 LAAVAQRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSLEGKDLLPVLSEEIRVVLV 193

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL L E + +    + + E+S    +++     GG   ++L  L +++ DR+  + 
Sbjct: 194 RVDSGLELGEELRKTAALLAVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 253

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +     + AK S  ++  L   +  ++    PG++ +
Sbjct: 254 QEYISKLSAKMSVVMMVFLFPALLIVL--AGPGFIAI 288


>gi|21222913|ref|NP_628692.1| integral membrane protein [Streptomyces coelicolor A3(2)]
 gi|7242745|emb|CAB77319.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
          Length = 302

 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 62/156 (39%), Gaps = 4/156 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++     +           LD++  S+  G  + +A+      S        R  +    
Sbjct: 148 VRRDAADKRRDLRRVIGAYLDLVSMSLAGGRGLPEALMAAAEVSDGWATHRIRNALADAR 207

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           +   S  +++ ++   + ++E+   S  +++ +  G  + E+LA+ +  +R R+  + + 
Sbjct: 208 ITGISQWQALGQLGEDLGVEELKDLSASLALVADDGAKVRESLASRAETMRHRELSEIE- 266

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
              S   K+ + ++  L  C   LV+   P  M V 
Sbjct: 267 --GSAGEKSQSMLVAQLLLCAGFLVFLIYPAAMRVF 300


>gi|197302282|ref|ZP_03167341.1| hypothetical protein RUMLAC_01009 [Ruminococcus lactaris ATCC
           29176]
 gi|197298713|gb|EDY33254.1| hypothetical protein RUMLAC_01009 [Ruminococcus lactaris ATCC
           29176]
          Length = 410

 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 40/146 (27%), Gaps = 9/146 (6%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--------SSDPVRSEFRRVIETQHLGL 63
              D+P  ++     + AG+ V +A   I                  E            
Sbjct: 260 MRRDYPQIINRFSLYIGAGMSVRNAWQRITEDYRKNKERTGRRKAYEEMIYTENQMKNKA 319

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + SE          L     F T++S    +    LSE L   +  + + +  +A+    
Sbjct: 320 AESECYEEYGIRCGLSVYRRFGTLLSQNLRKGSKGLSELLKRETGEMFEERKKQARKLGE 379

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTS 148
               K    +   L      ++    
Sbjct: 380 EAGTKLMIPLFMMLAVVFIIVIVPAF 405


>gi|299532823|ref|ZP_07046210.1| type II secretion system protein [Comamonas testosteroni S44]
 gi|298719047|gb|EFI60017.1| type II secretion system protein [Comamonas testosteroni S44]
          Length = 311

 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 62/158 (39%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           ++ +  +R A    + P  +D++      G+ +   + VI          +  E +   +
Sbjct: 148 LRSVAGRRRASVARELPLLVDLLGLLQGTGMSLDQTLQVIGSDFGNVMPVLSREIKLANQ 207

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   S  RM        ++  ++++    + GG + E L      LR+++  K 
Sbjct: 208 QYSRGSTRERSFGRMSEVYQNDNLANLTSLMIQIDRYGGAVQEPLRIFGERLREQRKAKM 267

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           K     +  K +A ++ +L   +   +    PG++ V+
Sbjct: 268 KELIGKISVKMTAVMVVTLLPALI--IITAGPGFLAVI 303


>gi|256785971|ref|ZP_05524402.1| integral membrane protein [Streptomyces lividans TK24]
 gi|289769863|ref|ZP_06529241.1| integral membrane protein [Streptomyces lividans TK24]
 gi|289700062|gb|EFD67491.1| integral membrane protein [Streptomyces lividans TK24]
          Length = 306

 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 62/156 (39%), Gaps = 4/156 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++     +           LD++  S+  G  + +A+      S        R  +    
Sbjct: 152 VRRDAADKRRDLRRVIGAYLDLVSMSLAGGRGLPEALMAAAEVSDGWATHRIRNALADAR 211

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           +   S  +++ ++   + ++E+   S  +++ +  G  + E+LA+ +  +R R+  + + 
Sbjct: 212 ITGISQWQALGQLGEDLGVEELKDLSASLALVADDGAKVRESLASRAETMRHRELSEIE- 270

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
              S   K+ + ++  L  C   LV+   P  M V 
Sbjct: 271 --GSAGEKSQSMLVAQLLLCAGFLVFLIYPAAMRVF 304


>gi|301632374|ref|XP_002945261.1| PREDICTED: type 4 fimbrial assembly protein pilC-like [Xenopus
           (Silurana) tropicalis]
          Length = 184

 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 10/109 (9%)

Query: 3   HLIKKRT---AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIE 57
            + K+R     K    D       +   ++AG+P+  A  ++   + +P V      +  
Sbjct: 51  KIKKRRMRAGKKIKPKDIALFTRQMATMMKAGVPLLQAFDIVGRGNPNPSVTKLLNDLRS 110

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLS 106
               G SL+ +  +          +     +    +  G L   L  LS
Sbjct: 111 DVETGSSLNVAFRKYPL-----YFNNLYCNLVEAGEAAGILEMLLDRLS 154


>gi|237812071|ref|YP_002896522.1| type II secretion system protein [Burkholderia pseudomallei
           MSHR346]
 gi|237506289|gb|ACQ98607.1| type II secretion system protein [Burkholderia pseudomallei
           MSHR346]
          Length = 340

 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66
              +D+ P  +D++      GL +  ++ V+          + SE          G +  
Sbjct: 186 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 245

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+ R+      +++     ++    + GG + E L      LR+ +    + +   +  
Sbjct: 246 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 305

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           K +  +I +L   +   +    PG + V
Sbjct: 306 KMTGVMILTLLPALF--IVTAGPGMLAV 331


>gi|254197742|ref|ZP_04904164.1| type II secretion system protein [Burkholderia pseudomallei S13]
 gi|169654483|gb|EDS87176.1| type II secretion system protein [Burkholderia pseudomallei S13]
          Length = 340

 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66
              +D+ P  +D++      GL +  ++ V+          + SE          G +  
Sbjct: 186 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 245

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+ R+      +++     ++    + GG + E L      LR+ +    + +   +  
Sbjct: 246 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 305

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           K +  +I +L   +   +    PG + V
Sbjct: 306 KMTGVMILTLLPALF--IVTAGPGMLAV 331


>gi|261854771|ref|YP_003262054.1| general secretion pathway protein F [Halothiobacillus neapolitanus
           c2]
 gi|261835240|gb|ACX95007.1| general secretion pathway protein F [Halothiobacillus neapolitanus
           c2]
          Length = 407

 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 57/176 (32%), Gaps = 8/176 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           +       I   + AGLP+  A++ I+ Q+    +R     V      G SL++ ++   
Sbjct: 69  ELALFTRQISTLIAAGLPIDAALSGIIRQTENPRIRRIVTAVRSKVVEGHSLAQGLATFP 128

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R       S          +  G+L   L  L+     R+    KVQ           + 
Sbjct: 129 RA-----FSELYRATVAAGEESGHLEAVLERLADYTEGRQATTQKVQMALFYPALLTLMA 183

Query: 134 GSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
            ++   + T V          +     P    L+ V+A        ++  M  F +
Sbjct: 184 VAVVIGLVTYVVPQVVQVFVQMKQTLPPLTRGLIAVSAFLREQWPWILLGMAAFAI 239


>gi|145591089|ref|YP_001153091.1| type II secretion system protein [Pyrobaculum arsenaticum DSM
           13514]
 gi|145282857|gb|ABP50439.1| type II secretion system protein [Pyrobaculum arsenaticum DSM
           13514]
          Length = 261

 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 63/174 (36%), Gaps = 2/174 (1%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ-H 60
           HL+  R + F ++    L +++  + AG+P+  AV  +   +    +  E          
Sbjct: 69  HLVSARRSHFENNLVYTLGVLLPLLAAGVPLGRAVTRLAEVEDDRYIARELALAAREMIV 128

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S  E++S     +P         +++  ++L   +   L      L   K +KA+  
Sbjct: 129 MGSSPEEALSHSAERVPSVTYRETVEMLTRSAKLTQRVDAVLLARLDWLLRAKQIKAQSL 188

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
             SM      +++ ++       +   S   + VL         L +     LI
Sbjct: 189 VRSMSLMFEIFVVVTILLPTLVYIVALSLSPLGVLELGGLALDPLTLMLLMSLI 242


>gi|170718924|ref|YP_001784093.1| type II secretion system protein [Haemophilus somnus 2336]
 gi|168827053|gb|ACA32424.1| type II secretion system protein [Haemophilus somnus 2336]
          Length = 406

 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 62/165 (37%), Gaps = 6/165 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           +F + L  +   +++ +P+ D++ +++    +  +    R +++    GLS S+S+++  
Sbjct: 59  EFCDLLTQLAMLLQSSIPLKDSLQILLRNCVNISLNQWVRYILKNLEGGLSFSQSVAQSG 118

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
            Y   QE       +    ++ G+L+     ++   +    ++ K+Q + +       I 
Sbjct: 119 LYFSYQER-----QLISVGEMTGDLASVCQQIAEHRQQALALQRKIQKILLYPMIVLSIS 173

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             L   +   +            ++      L +  +  L     
Sbjct: 174 VILTALLLIFIVPQFAEMYGSNQSELPFFTQLLLNISSFLQQYFF 218


>gi|183599887|ref|ZP_02961380.1| hypothetical protein PROSTU_03408 [Providencia stuartii ATCC 25827]
 gi|188022162|gb|EDU60202.1| hypothetical protein PROSTU_03408 [Providencia stuartii ATCC 25827]
          Length = 395

 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/160 (8%), Positives = 45/160 (28%), Gaps = 6/160 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   V +G+ +  ++ ++   +     +      I     G   S+S+ +      
Sbjct: 61  FFYQLNSLVSSGINLLQSLYILQKNTHSPFWQKIITSTITDLKKGNRFSDSLRKHPNIFT 120

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +   ++  GN       ++ +L+  +  K K+               +L 
Sbjct: 121 P-----TIISLISVAEKTGNYENNFKIIAGMLKHNEETKKKITKSLRYPIVLTLFSIALI 175

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           F +   V            ++      + +  + ++    
Sbjct: 176 FIMLVYVLPQFETIYQSFQHELPLITKIMIYLSNLITDYF 215



 Score = 38.6 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 46/149 (30%), Gaps = 13/149 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQ 59
           +K LIK        +       +  +++AGLP+++ +        +P+ + E   V    
Sbjct: 250 IKKLIK------NSNLNIFFLTLSSTLQAGLPLTECLKCTADTLHNPLYKKESLSVYHAV 303

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G SLS ++                  +   ++  G L   L  L      +     + 
Sbjct: 304 LKGESLSAAVKNSA------FFPSIVHQLIAVAEESGQLPHFLQYLFTHFSTQHTSLTEK 357

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTS 148
              ++E      +   +   +  +     
Sbjct: 358 SLKNLEPILLLLMAFLVGTIMVAMYLPIF 386


>gi|310640814|ref|YP_003945572.1| type ii secretion system f domain protein [Paenibacillus polymyxa
           SC2]
 gi|309245764|gb|ADO55331.1| Type II secretion system F domain protein [Paenibacillus polymyxa
           SC2]
          Length = 292

 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 61/148 (41%), Gaps = 5/148 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG----QSSDPVRSEFRRVI 56
           +   ++KR  + L + P  L  ++  V AG  V  A+   V      +  P+  E  + +
Sbjct: 135 LHGKVQKRDQQILMELPELLSKMMLLVGAGETVQRALLHCVERKGADTVHPLYRELLQTV 194

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVS-FFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                G S  ++   + +   +QEV+ F +TV+    + G +   AL  LS+ L  ++  
Sbjct: 195 GEWESGYSFQQAFEHLSKRCGIQEVTIFTTTVLLNMRRGGSDFVMALRELSQTLWSKRTS 254

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTL 143
            ++ +     +K    +   L   +  +
Sbjct: 255 ISRTRGEQASSKLVFPMALILLTVIVLV 282


>gi|260495328|ref|ZP_05815455.1| general secretion pathway protein F [Fusobacterium sp. 3_1_33]
 gi|260197106|gb|EEW94626.1| general secretion pathway protein F [Fusobacterium sp. 3_1_33]
          Length = 346

 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 65/170 (38%), Gaps = 13/170 (7%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGL 63
           +K +  K L       + +   +++GL  + A+ +I+ +  D    E  R + +    G 
Sbjct: 1   MKNKKEKIL----FFTNELAIMLKSGLTFTTAIEIILKEEKDKNFKEVLRKIHKNLIAGK 56

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S+ ES     +             +    ++ G+++E L ++S+ L      + K+  + 
Sbjct: 57  SIFESFKNFDKIFGN-----TYLYMLKIGEVSGSITERLEDISKSLEFDLTNQKKLGGIL 111

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           +       +I      V+ L+ F  P ++ +   +     L+     F+ 
Sbjct: 112 VYPI---VVISLTLIIVTFLLTFILPNFITIFEENQVELPLITRILLFIS 158


>gi|254168618|ref|ZP_04875461.1| Bacterial type II secretion system protein F domain
           [Aciduliprofundum boonei T469]
 gi|289595685|ref|YP_003482381.1| Type II secretion system F domain protein [Aciduliprofundum boonei
           T469]
 gi|197622452|gb|EDY35024.1| Bacterial type II secretion system protein F domain
           [Aciduliprofundum boonei T469]
 gi|289533472|gb|ADD07819.1| Type II secretion system F domain protein [Aciduliprofundum boonei
           T469]
          Length = 332

 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 54/177 (30%), Gaps = 2/177 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLG 62
             KKR        P A++ I     A + V+     +   +    +  E   +     L 
Sbjct: 142 KAKKRAKDIDTHLPTAVNFIAALSSADVTVASIFKELSTRKEYGEIAKEAEWITRDTELL 201

Query: 63  L-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
              +  +I    R  P  +   F   +   +  GG L     + S      K +  K   
Sbjct: 202 GKDILTAIEEASRRSPSVKWQEFLQGVITTATSGGRLKPFFMSKSEEYEKEKRLMLKKNM 261

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            S+   A  ++   + F +  +V       +N         +L  +    + + I V
Sbjct: 262 ESLGLFAEIYVTVGVAFPLFLVVIIAIMALINKNSAASTVMLLEIIVVVMIPVLIFV 318


>gi|226949206|ref|YP_002804297.1| bacterial type II secretion system protein F [Clostridium botulinum
           A2 str. Kyoto]
 gi|226841646|gb|ACO84312.1| bacterial type II secretion system protein F [Clostridium botulinum
           A2 str. Kyoto]
          Length = 396

 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 61/182 (33%), Gaps = 8/182 (4%)

Query: 2   KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           K++ K R+ K    D     + +   + +G+ ++DA+ ++    ++         I    
Sbjct: 45  KNIFKIRSEKITLKDCSILCNKLYMLMASGINITDAINIVYEDFNNVHVKNSLYTIRNNI 104

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           L      +  +            F   +    +  G +   L++L     ++     +++
Sbjct: 105 LRGDSIYNSFK----GFSNIYPKFLLSMIYIGEESGRIQYVLSDLKNFYENKYKFNKEIK 160

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA---FMLIGIM 177
              +           + + +  +V  +  G  N L        L  + A     +++GI+
Sbjct: 161 NALIYPIIVLIAFIIMLYILIHMVVPSFIGIFNELGGSIPKKTLGMITAIKVFNVILGIL 220

Query: 178 VM 179
            +
Sbjct: 221 FI 222



 Score = 37.4 bits (85), Expect = 0.88,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 48/130 (36%), Gaps = 5/130 (3%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           N  + +   +++G+P++ ++ ++   + + +  E  +     +L  ++ +  S       
Sbjct: 265 NFSNSMNLMIKSGIPINKSLKLLEEVTDNYIFKENIK-----NLNKNIKDGKSISTSLNK 319

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               +     +    +  G L E+  ++ +IL+     K KV    +E     ++   + 
Sbjct: 320 CGFSNKILLSMVHIGEESGRLEESFYSVYKILKKDLEEKLKVSVKLIEPTIIIFMSLIIC 379

Query: 138 FCVSTLVYFT 147
                +    
Sbjct: 380 IIFIYVFIPM 389


>gi|152981972|ref|YP_001355002.1| Flp pilus assembly protein TadC [Janthinobacterium sp. Marseille]
 gi|151282049|gb|ABR90459.1| Flp pilus assembly protein TadC [Janthinobacterium sp. Marseille]
          Length = 317

 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 59/136 (43%), Gaps = 3/136 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           M+   ++R  +  ++ P  +D++      G+ +  ++ V+  + S     +  E +   +
Sbjct: 152 MQIRARERRQQANEELPLLIDLLRLLQGVGMSIDQSLHVVENEFSTSLPVLGKELQIAAQ 211

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+ R       +++S  + +I    + GG + + L   S  LR+++ +  
Sbjct: 212 QYQNGRTREQSLRRFSSLFENEDMSAVARLIVQVDRYGGAVQQPLQQFSDRLREQRKLDM 271

Query: 118 KVQALSMEAKASAWII 133
           K +   +  K +  ++
Sbjct: 272 KEKVGKLTVKMTGVMV 287


>gi|297201341|ref|ZP_06918738.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
 gi|197712796|gb|EDY56830.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
          Length = 312

 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 61/185 (32%), Gaps = 19/185 (10%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-------------------DPVRSEFRRVIETQ 59
              ++   VRAG    +A+   V                                V+   
Sbjct: 123 LCALVAGEVRAGRQPGEALVRAVRDFEGPGRAGAGSGGSGLAAPEAGGFGETQASVLAAA 182

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G  +  +++   R    + +   +    V    G  L+  L  L   LR  ++ +A +
Sbjct: 183 RFGGDVPGALAAAARRPGAEGLLGLAACWRVAVDQGAGLAAGLDRLEGALRAERDQRADL 242

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +A    A+++ W++ +LP     L        ++VL++   G   L V      +G+   
Sbjct: 243 RAQLAGARSTVWMLAALPVLGLGLGAALGADPLHVLLHTGSGLGCLLVGGLLEGVGMWWA 302

Query: 180 RLMIN 184
             ++ 
Sbjct: 303 TRIVR 307


>gi|18313580|ref|NP_560247.1| hypothetical protein PAE2779 [Pyrobaculum aerophilum str. IM2]
 gi|18161124|gb|AAL64429.1| hypothetical protein PAE2779 [Pyrobaculum aerophilum str. IM2]
          Length = 261

 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 59/155 (38%), Gaps = 2/155 (1%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ-H 60
           HL+  R + F ++F   L +++  + AG+P+  AV  +   +    +  E          
Sbjct: 69  HLVSARRSHFENNFVYTLGVLLPLLAAGVPLGRAVTRLAEVEEDKYIARELALAAREMIV 128

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S  E+++     +P         V+   +++   +   L      L   K ++A+  
Sbjct: 129 MGASQEEALAHSAERVPSVTYRETVEVLIRSAKITQRVDAVLLARLDWLLRNKQVRAQSL 188

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
             S+      +++ ++   +   +   S   +  L
Sbjct: 189 IRSLSLMFEIFVVAAMLLPLMVYIVALSFSPLGAL 223


>gi|113460602|ref|YP_718667.1| protein transport protein [Haemophilus somnus 129PT]
 gi|112822645|gb|ABI24734.1| protein transport protein [Haemophilus somnus 129PT]
          Length = 406

 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 62/165 (37%), Gaps = 6/165 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           +F + L  +   +++ +P+ D++ +++    +  +    R +++    GLS S+S+++  
Sbjct: 59  EFCDLLTQLAMLLQSSIPLKDSLQILLRNCVNISLNQWVRYILKNLEGGLSFSQSVAQSG 118

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
            Y   QE       +    ++ G+L+     ++   +    ++ K+Q + +       I 
Sbjct: 119 LYFSYQER-----QLISVGEMTGDLASVCQQIAEHRQQALALQRKIQKILLYPMIVLSIS 173

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             L   +   +            ++      L +  +  L     
Sbjct: 174 IILTALLLIFIVPQFAEMYGSNQSELPFFTQLLLNISSFLQQYFF 218


>gi|320009993|gb|ADW04843.1| Type II secretion system F domain protein [Streptomyces
           flavogriseus ATCC 33331]
          Length = 289

 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 59/163 (36%), Gaps = 1/163 (0%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           ++  +RAG     A+ +    +   + +    V+     G  +  ++ +      L  ++
Sbjct: 124 VIGELRAGREPGQALLIAARAADA-LGTSGPAVLAAARFGGDVPAALLQASAGPGLDGLA 182

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
             +    V    G  L   LA L   LR  +  + +++A    A ++  ++  LP     
Sbjct: 183 GMAACWRVAVNGGAGLGAGLARLEGALRGERRRREELRAQLAGAWSTVVVLALLPMLGLG 242

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           L        + VL++ P G + L    A    G+     ++  
Sbjct: 243 LGAALGADPLTVLLHTPGGLVCLVTGGALEAAGLFWASRIVRV 285


>gi|320100494|ref|YP_004176086.1| type II secretion system F domain-containing protein
           [Desulfurococcus mucosus DSM 2162]
 gi|319752846|gb|ADV64604.1| Type II secretion system F domain protein [Desulfurococcus mucosus
           DSM 2162]
          Length = 580

 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 62/181 (34%), Gaps = 10/181 (5%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           ++   R  K        L  +V   + GLP   ++  +  +         R++     +G
Sbjct: 369 YIYSSREYKVTRGITRFLRDLVEVRKTGLPPERSIIELSPRDYGVFTPHLRKIAMELSIG 428

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + L      ++R +          +++   ++GG   E L NL+      + ++ + +  
Sbjct: 429 IPLRRITDEVMRKIRSWIGQVLLFILTDSIEVGGGTVEVLENLAWFAESVEAIEDERKRS 488

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL------INDPRGHMLLGVAAAFMLIGI 176
                   ++ G L       +     GYM  L       N   G +L  +     ++GI
Sbjct: 489 LRTLMIVPYMGGILSAVTVIYMV----GYMAKLPIQVGTFNQAAGVVLPSIVLNNYVMGI 544

Query: 177 M 177
           +
Sbjct: 545 V 545



 Score = 38.9 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 66/180 (36%), Gaps = 6/180 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS---EFRRVIETQHL 61
              R +    +FP     +   V +GL    A   I+  S+   R+     R ++  + L
Sbjct: 95  ASNRASSIDGEFPFLSSYLSTMVMSGLSPYIAFERILKGSTIFKRTSELAQRFILLNRIL 154

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G     +   + +  P   V    +      + GG++ + L   SR+L +   +  K+ A
Sbjct: 155 GRDPLTAFDELAKRTPSSRVKETLSGYIATVKAGGDVVDYLNKRSRLLFNEMLVGMKIIA 214

Query: 122 LSMEAKASAWIIGSLPFCV-STLVYFTSPGYMN--VLINDPRGHMLLGVAAAFMLIGIMV 178
             +     A++   L   +  T++YF + G+           G          +L G+++
Sbjct: 215 DRLGGLLEAYLAMILLTMISFTVLYFVTTGFAGVVPFGLSSEGMFFFLYIVMPLLSGVII 274


>gi|240143493|ref|ZP_04742094.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
 gi|257204527|gb|EEV02812.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
 gi|291537188|emb|CBL10300.1| Bacterial type II secretion system protein F domain [Roseburia
           intestinalis M50/1]
 gi|291540422|emb|CBL13533.1| Bacterial type II secretion system protein F domain [Roseburia
           intestinalis XB6B4]
          Length = 423

 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 41/151 (27%), Gaps = 11/151 (7%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ----------SSDPVRSEFRRVIETQHL 61
               + + +  +V  + AG+ VS A   +                 V  E +R       
Sbjct: 271 LELQYADMVSNLVLLLGAGMTVSKAWNRLTENYMNERQKRTICRKEVYEEMQRTSFEIKN 330

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           G+    +  R            F  +++    +    L+  L   +    + +   A+  
Sbjct: 331 GMGEERAYERFGERCGGYRYRKFGNLLAQNLRKGSRGLTRLLEQEAEDAFEERKSMARKL 390

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
                 K    +I  L   +  L +      
Sbjct: 391 GEEAGTKMLFPMILMLGAVMLILAFPAMRSM 421


>gi|260439392|ref|ZP_05793208.1| putative bacterial type II secretion system protein F domain
           protein [Butyrivibrio crossotus DSM 2876]
 gi|292808188|gb|EFF67393.1| putative bacterial type II secretion system protein F domain
           protein [Butyrivibrio crossotus DSM 2876]
          Length = 388

 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/155 (10%), Positives = 45/155 (29%), Gaps = 7/155 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-----DPVRSEFRRVIETQ 59
            +KR    + D+P  +  +   + AG+   +A   I           P        +   
Sbjct: 236 KEKRDKLLIADYPELVSKLSLLMGAGMSTYNAFIKITEDYRKTGKTKPAYELLSECLNRI 295

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G++ +++     +   +        +++     G +    L  L          +  +
Sbjct: 296 SSGITETDAYMEFGKRCNVMCYIKLGNLLAQNISKGTDNIFQL--LKEETEKAFEDRKAL 353

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
                E   +  ++         L+    P +M+ 
Sbjct: 354 AKKLGEEAGTKLLLPMTMMLSVVLIIIVIPAFMSF 388


>gi|188532937|ref|YP_001906734.1| General secretion pathway protein F (Pectic enzymes secretion
           protein outF) [Erwinia tasmaniensis Et1/99]
 gi|188027979|emb|CAO95836.1| General secretion pathway protein F (Pectic enzymes secretion
           protein outF) [Erwinia tasmaniensis Et1/99]
          Length = 401

 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/179 (12%), Positives = 49/179 (27%), Gaps = 20/179 (11%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   V A LP+  A+  +  Q++ P        I  +     L  +       +  
Sbjct: 67  MTRQLATLVGAALPLEQALLALEKQTTRPAGRTMLHAIRQKV----LEGASLADAVSLYP 122

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G L   L  L+      + +K+K+    +       +  S+  
Sbjct: 123 ATFPPLYQAMIAAGEASGKLDNVLEQLADYSEKTQQIKSKLTQAMIYPLLLTLVAISVIT 182

Query: 139 CVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVMRL 181
            + T V  +       +                +    G  +L V         +++R 
Sbjct: 183 ILLTAVVPSVVEQFVHMKQALPLSTRLLMAISEMTRAVGLPVLLVMLLAGFCARILLRR 241


>gi|154496359|ref|ZP_02035055.1| hypothetical protein BACCAP_00647 [Bacteroides capillosus ATCC
           29799]
 gi|150274442|gb|EDN01519.1| hypothetical protein BACCAP_00647 [Bacteroides capillosus ATCC
           29799]
          Length = 349

 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 59/184 (32%), Gaps = 19/184 (10%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
           D        +   + AG+   + V V+    +    ++    +      G  LSE++   
Sbjct: 13  DALSVFCYQLSLMMHAGIGSEEGVEVLAEDAADPRSKALLESLHAALLDGAPLSEALRAS 72

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +        +   +    Q  G L + L+ L+   R      + ++   +     A +
Sbjct: 73  GAFPG------YMVRMVEIGQAAGRLDQVLSALAAYYRRESETASAIRRAVLYPAVMAVL 126

Query: 133 IGSLPFCVSTLVYFTS------------PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           + ++   + T V                P    ++     G  + GV    + IG +V+ 
Sbjct: 127 VAAVFLVLMTRVLPVFQQVFQQLGLTLSPAAQALMTAGTAGQYVGGVLVVLLAIGAVVLL 186

Query: 181 LMIN 184
           ++  
Sbjct: 187 VLSR 190


>gi|332982951|ref|YP_004464392.1| Type II secretion system F domain-containing protein [Mahella
           australiensis 50-1 BON]
 gi|332700629|gb|AEE97570.1| Type II secretion system F domain protein [Mahella australiensis
           50-1 BON]
          Length = 279

 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 56/155 (36%), Gaps = 1/155 (0%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +  +    +KF    P  +D +++ +   +PV   ++ I    S  V    + + +    
Sbjct: 120 RSAVSTYKSKFESQLPAVIDSMIQGLAIEMPVEQVISYIADTKSGVVTPFLKELRDMLFT 179

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G SL  +++ +       +    + ++S +S+    +   L  +   +  R   +   +A
Sbjct: 180 GSSLESALTEVSAKTLSPDFERVARILSFRSETTAEMIHGLEQIRDNMETRLETQIMAKA 239

Query: 122 LSMEAKASAWIIGSLPFC-VSTLVYFTSPGYMNVL 155
            +ME      I+       +  ++Y      +   
Sbjct: 240 NNMENTMILPIMAGYVLPYLVIILYPMLSDLLKFF 274


>gi|319955828|ref|YP_004167091.1| type II secretion system f domain protein [Nitratifractor
           salsuginis DSM 16511]
 gi|319418232|gb|ADV45342.1| Type II secretion system F domain protein [Nitratifractor
           salsuginis DSM 16511]
          Length = 406

 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/159 (8%), Positives = 46/159 (28%), Gaps = 2/159 (1%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
              +    +   + +G+ +  A+ ++  +S       +   +      +    S+ + + 
Sbjct: 62  QLSDFSRELSSYLGSGMTILTALKLM--ESQHRDEKRYAAFLGEVRRKVDEGNSLYKALA 119

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
              + ++  F       +   G +SE L N+ +    +  ++ +V            +  
Sbjct: 120 EQNVYQLPDFFLQSLRVAGESGKVSEVLTNMGQFFSLQSRIRKQVLNALAYPLFIFVVAI 179

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
            +   + T V     G                +  +   
Sbjct: 180 GMTGFLITFVVPKITGIFEDTGQQLPAITRFVLGLSDFF 218



 Score = 36.3 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/136 (10%), Positives = 41/136 (30%), Gaps = 3/136 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             +      I+   + +G+  + AV +      +            + +  +   +   +
Sbjct: 266 NHELARFSYILSLMLDSGVSYAQAVQLAGTTFGNEALKAKFEKATQKVVEGNKLSNALHL 325

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +P   +           +    ++  + N+S++  +    K K+    ME      I
Sbjct: 326 AGGVP---LKRNFLQSLALGEESSEVASVMRNVSKLYSEENEDKIKILLSLMEPLMMLLI 382

Query: 133 IGSLPFCVSTLVYFTS 148
            G +   V  ++    
Sbjct: 383 GGIVGVIVMAMLLPIF 398


>gi|118580834|ref|YP_902084.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
 gi|118503544|gb|ABL00027.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
          Length = 402

 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 52/190 (27%), Gaps = 20/190 (10%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHL 61
             I +R              ++  V+AG+P+  A+  I+ +     +    R+V +    
Sbjct: 53  KRIGRRQLD-TRSLLTFNQEMLVLVKAGMPIMQALNTILQRQDGSRLTEVLRQVRDDVKG 111

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G SLS ++ R  R  P               +  G+L        + L+  + ++ KV +
Sbjct: 112 GASLSTALERHGRLFPH-----LYIASVRAGERTGDLINTTRRYIQYLKRVEAIRKKVVS 166

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTS-------------PGYMNVLINDPRGHMLLGVA 168
                     +       +   V  T              P  M +          L   
Sbjct: 167 AMFYPAIIVVVASLAVLLLLVYVVPTFSQIYADAGSQLPLPTQMLIAFTTFLKRFFLVGL 226

Query: 169 AAFMLIGIMV 178
                     
Sbjct: 227 VLLFAAAAWF 236


>gi|325290043|ref|YP_004266224.1| Type II secretion system F domain protein [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965444|gb|ADY56223.1| Type II secretion system F domain protein [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 387

 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 48/142 (33%), Gaps = 6/142 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73
                       ++A + +   +  IV Q  + +R   ++ V      G +LS+++    
Sbjct: 61  QLSLIARKFANLLQAEVSLLKVLDFIVKQEKNDLRKIQWQNVSLDVQSGHTLSQAVQE-- 118

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
               +     F+  +    +  G L+EA   ++    +    + KV+           + 
Sbjct: 119 ---NIPAFGSFAQALIQAGEKSGTLAEAFGRMAGQFEEEYFYREKVKTALFYPVLLFLVS 175

Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155
            ++   +STLV          L
Sbjct: 176 MAVLLMLSTLVLPMYESVFAAL 197



 Score = 37.4 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 45/135 (33%), Gaps = 5/135 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
               +   I+ R + AG+ V++++  +    + P     + +     L + L +      
Sbjct: 251 HQLIHFCGILGRLLEAGISVNESLEQLRKTVTGP-----KLLGFIDDLQVRLLQGQPLDS 305

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
            ++        +  I    +  G  +E L N+S I +     K +     +E      I 
Sbjct: 306 AFLANNYFPGETAEILAVGEQSGRFAETLLNISVIFKQELGTKMERMVKLIEPMMILGIS 365

Query: 134 GSLPFCVSTLVYFTS 148
             + F    ++    
Sbjct: 366 FLVGFVALGVLLPVF 380


>gi|304440372|ref|ZP_07400261.1| possible type II secretion system protein [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304371124|gb|EFM24741.1| possible type II secretion system protein [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 388

 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 58/158 (36%), Gaps = 9/158 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             + P     I   +R+G+ +  A  ++   S       F  V +   +G SL E     
Sbjct: 56  EGEIPLLFKEISIMLRSGIDLYGAFVLLKNSSDGKKYDFFSNVEKRLKMGESLGEIFEE- 114

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 +  S F       ++   NL E   N++  L++ +N++ +V+   +       +
Sbjct: 115 -----SKIFSKFVISSIKIAEESENLEETFTNMAEYLQELENIRQEVKKSLIYPI---IL 166

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           I +    V+ L+ F  P ++ +  +      L+     
Sbjct: 167 IFTTMLVVNFLIIFVVPTFVGLYASRDLELPLITKIVV 204


>gi|45357601|ref|NP_987158.1| type II secretion system protein [Methanococcus maripaludis S2]
 gi|45047161|emb|CAF29594.1| conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 298

 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 80/197 (40%), Gaps = 17/197 (8%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLG 62
           + + +  KF  + P AL ++V S+ +G  V +A+  ++      V   F +++       
Sbjct: 77  MYESKMDKFDKNIPKALYVMVLSLDSGRSVVEAINEVIRSGIPEVDVVFSKIVTLMTERK 136

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           LS  +++  +   +  +       +I    + GG L++ L  L++ L D +N+K+++ ++
Sbjct: 137 LSFEDAMILVSNSLDSKIFRQVGRLIIENRKYGGELADTLKKLAKTLDDLQNLKSQLLSV 196

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR----------------GHMLLG 166
           +    A   II       +  +       ++ L                     G  L G
Sbjct: 197 TANGLAVGLIILCGVIPATAGLIGGYLTVISQLAPTMPSVEASQISKAIETIQMGSGLFG 256

Query: 167 VAAAFMLIGIMVMRLMI 183
           +  A  L G+ V R++I
Sbjct: 257 LFFAVPLFGLKVNRMII 273


>gi|254302343|ref|ZP_04969701.1| MTB family outer membrane protein secretion main terminal branch
           protein [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148322535|gb|EDK87785.1| MTB family outer membrane protein secretion main terminal branch
           protein [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 346

 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 65/170 (38%), Gaps = 13/170 (7%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGL 63
           +K +  K L       + +   +++GL  + A+ +I+  +     +   +++ +    G 
Sbjct: 1   MKNKKEKIL----FFTNELAIMLKSGLTFTTAIEIILKEEKDKNFKDVLKKIHKNLIAGK 56

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S+ ES     +             +    ++ G+++E L ++S+ L      + K+  + 
Sbjct: 57  SIFESFKNFDKIFGN-----TYLYMLKIGEVSGSIAERLEDISKSLEFDLANQKKLGGIL 111

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           +       +I      V+ L+ F  P ++ +   +     L+     F+ 
Sbjct: 112 VYPI---VVISLTLIIVTFLLTFILPNFITIFEENQVELPLITRILLFIS 158


>gi|50954221|ref|YP_061509.1| integral membrane protein [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50950703|gb|AAT88404.1| integral membrane protein [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 256

 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 30/88 (34%)

Query: 97  NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
            LS  L      LRDR     +V+A     +A++ ++ +LP     +        +  + 
Sbjct: 42  ALSPVLRGAGASLRDRAETAREVEAALSGPRATSRLMTALPLVGLLMAAGLGIDVLGAIT 101

Query: 157 NDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
               G  LL         G   M  ++ 
Sbjct: 102 GSLIGWGLLVAGVGLTFAGRAWMSRLVR 129


>gi|148379869|ref|YP_001254410.1| type II secretion system protein F [Clostridium botulinum A str.
           ATCC 3502]
 gi|153933284|ref|YP_001384166.1| type II secretion system protein F [Clostridium botulinum A str.
           ATCC 19397]
 gi|153934559|ref|YP_001387707.1| type II secretion system protein F [Clostridium botulinum A str.
           Hall]
 gi|148289353|emb|CAL83449.1| general secretion pathway protein [Clostridium botulinum A str.
           ATCC 3502]
 gi|152929328|gb|ABS34828.1| bacterial type II secretion system protein F [Clostridium botulinum
           A str. ATCC 19397]
 gi|152930473|gb|ABS35972.1| bacterial type II secretion system protein F [Clostridium botulinum
           A str. Hall]
          Length = 396

 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 61/182 (33%), Gaps = 8/182 (4%)

Query: 2   KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           K++ K R+ K    D     + +   + +G+ ++DA+ ++    ++         I    
Sbjct: 45  KNIFKIRSEKITLKDCSILCNKLYMLMASGINITDAINIVYEDFNNVHVKNSLYTIRNNI 104

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           L      +  +            F   +    +  G +   L++L     ++     +++
Sbjct: 105 LRGDSIYNSFK----GFSNIYPKFLLSMIYIGEESGRIQYVLSDLKNFYENKYKFNKEIK 160

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA---FMLIGIM 177
              +           + + +  +V  +  G  N L        L  + A     +++GI+
Sbjct: 161 NALIYPIIVLIAFIIMLYILIHMVVPSFIGIFNELGGSIPKKTLGMITAIKVFNVILGIL 220

Query: 178 VM 179
            +
Sbjct: 221 FI 222



 Score = 37.4 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           N  + +   +++G+P++ ++ ++   + + +  E  +     +L  ++ +  S  +    
Sbjct: 265 NFSNSMNLMIKSGIPINKSLKLLEEVTDNYIFKENIK-----NLNKNIKDGKSISISLNK 319

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               +     +    +  G L E+  ++ +IL+     K KV    +E     ++   + 
Sbjct: 320 CGFSNKILLSMVHIGEESGRLEESFYSVYKILKKDLEEKLKVSVKLIEPTIIIFMSLIIC 379

Query: 138 FCVSTLVYFT 147
                +    
Sbjct: 380 IIFIYVFVPM 389


>gi|313835750|gb|EFS73464.1| type II secretion system F domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928423|gb|EFS92254.1| type II secretion system F domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314970120|gb|EFT14218.1| type II secretion system F domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328906759|gb|EGG26531.1| type II secretion system F domain protein [Propionibacterium sp.
           P08]
          Length = 147

 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 7/149 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +K+R A      P  L ++  ++ AGLP+  AV  +      P   + RR+      G+ 
Sbjct: 1   MKQRRAA---QLPETLLMLSSTMEAGLPLRAAVTTVAESLEGPCAEDLRRLASALAAGVP 57

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
            S++ + +            +  +S     G  +SE L+  +  L+     KA+ +A   
Sbjct: 58  DSKAWNDLAAVT---VWRDPAQDVSRAVDSGEGISELLSAHAAQLQVAAAEKAEKKARKA 114

Query: 125 EAKASAWIIGS-LPFCVSTLVYFTSPGYM 152
              A   +    LP  +   V     G +
Sbjct: 115 GVDAIGPLGCCHLPAFLLVGVVPIIAGMV 143


>gi|253576052|ref|ZP_04853385.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844627|gb|EES72642.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 285

 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/155 (7%), Positives = 48/155 (30%), Gaps = 1/155 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    K+R  +   D P  +  ++ ++  G      +  +   S   ++    R+     
Sbjct: 129 ITKAYKRRQEEITRDLPQLISKMMIALETGKSFLTTIQRLEETSGPRMKKMLARLNANIR 188

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +   L++++        +  +  F+  + +    G   ++   +  +    +  + A  +
Sbjct: 189 IMK-LTDAVDLFAAETDVPVMRDFAAAVKIGVNSGYGEAKKYFDSIKGDLRKLRLAALKE 247

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
               + +    +   +       V        + +
Sbjct: 248 VTRSQPEKIKMLYILVALHAFAAVIIAFIDIFSQI 282


>gi|289423267|ref|ZP_06425078.1| bacterial type II secretion system protein F [Peptostreptococcus
           anaerobius 653-L]
 gi|289156367|gb|EFD05021.1| bacterial type II secretion system protein F [Peptostreptococcus
           anaerobius 653-L]
          Length = 349

 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/151 (11%), Positives = 45/151 (29%), Gaps = 6/151 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
             I  R      +       +   + +G  +   + +++  SS  V    +R + +   G
Sbjct: 1   MRILSRKKINSKELKVISSQLSSMLGSGCDIITCLEILITSSSRTVEEGVKRTLRSIKNG 60

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            +L+ES +           + F   +    ++ G +      +S     +  +K+K+   
Sbjct: 61  KTLAESFAL------STYFTNFFVNMVRAGEISGKIDYVFNRMSFYYERQTKLKSKIIGA 114

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153
            +       +       +   V         
Sbjct: 115 CLYPIILLVVSIFSFVFMLVYVVPNFEQAFE 145


>gi|94313634|ref|YP_586843.1| Type II secretory pathway, gspf-related transmembrane protein
           [Cupriavidus metallidurans CH34]
 gi|93357486|gb|ABF11574.1| Type II secretory pathway, gspf-related transmembrane protein
           [Cupriavidus metallidurans CH34]
          Length = 413

 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 9/159 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+ V DA+  +      +     +  ++     G SLS ++       P
Sbjct: 80  FARELAALLDAGVGVIDALRTLGGNDRREASARVYGNLLRQLEEGHSLSAAMVNAANVFP 139

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                         S+  G L+++L   SR     + ++A+V + ++       +  +  
Sbjct: 140 D-----VLIACVKASEQTGGLADSLRRYSRNSATLQALRARVISAAIYPSVLLVVGMA-- 192

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
             V  L+ F  P +  +L +  R   L+          +
Sbjct: 193 -VVLFLLAFVVPRFAALLEHSGRELPLMSRWLMMWGGAV 230


>gi|271962055|ref|YP_003336251.1| hypothetical protein Sros_0482 [Streptosporangium roseum DSM 43021]
 gi|270505230|gb|ACZ83508.1| hypothetical protein Sros_0482 [Streptosporangium roseum DSM 43021]
          Length = 193

 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 61/154 (39%), Gaps = 4/154 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             ++   + + D P A D++V  +RAG P++ A+ V V     P+      V     LG 
Sbjct: 41  RARRERDRVVADLPLAADLMVACLRAGQPITGAIDVTVEAVGGPLGERLAWVSGQLRLGA 100

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           +   +   +    P   ++  + ++S  +  G  +++ L  LS   R      +   A  
Sbjct: 101 APESAWQALAAEPP---LAPLARMMSRAALSGAPVADVLTRLSDDSRHALRAASAAAARR 157

Query: 124 MEAKASAWI-IGSLPFCVSTLVYFTSPGYMNVLI 156
           +  +A A + +  LP  V   +     G    ++
Sbjct: 158 VGVQAVAPLGLCFLPAFVFLGIVPVVAGLAGEVL 191


>gi|256397305|ref|YP_003118869.1| type II secretion system protein [Catenulispora acidiphila DSM
           44928]
 gi|256363531|gb|ACU77028.1| type II secretion system protein [Catenulispora acidiphila DSM
           44928]
          Length = 304

 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 64/158 (40%), Gaps = 4/158 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K    ++   F       LD++  ++  G  + +A+      S        R  +    
Sbjct: 149 VKGQAAEKRRDFRRVLGAYLDLVAMNLAGGRGLPEALMAAAEVSDGWALRRIRDALTDAR 208

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           +   S   ++S++   + + E+      +++ ++ G  + E+LA  +  +R R+  + + 
Sbjct: 209 VTGISQWNALSQLGDALDVDELKDLGAALALVAEDGAKVRESLAARAETMRHRELSEIE- 267

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
              +  AK+ + ++  +  C   +V+   P    V+ +
Sbjct: 268 --GAAGAKSQSMLVAQMLLCAGFMVFLLYPAMARVMGS 303


>gi|309703739|emb|CBJ03080.1| putative general secretion pathway protein F (protein transport
           protein HofF) [Escherichia coli ETEC H10407]
          Length = 331

 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 55/179 (30%), Gaps = 28/179 (15%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +     A LP+ +++AVI  QSS+  +     +V      G  LS+++            
Sbjct: 1   MATLSAAALPLEESLAVIGQQSSNKRLGDVLNQVRSAILEGHPLSDALQHFPTL-----F 55

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L+  L  L+    +R+ +++K+    +       +       V 
Sbjct: 56  DSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQSLIYP---CMLTTVAIGVVI 112

Query: 142 TLVYFTSPGYMNVLINDP-------------------RGHMLLGVAAAFMLIGIMVMRL 181
            L+    P      ++                      G  LL       +   + ++ 
Sbjct: 113 ILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRTGPTLLATVFIVAVGFWLWLKR 171


>gi|147921248|ref|YP_684938.1| putative type II secretion system protein [uncultured methanogenic
           archaeon RC-I]
 gi|110620334|emb|CAJ35612.1| putative bacterial type II secretion system protein [uncultured
           methanogenic archaeon RC-I]
          Length = 652

 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 53/145 (36%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L  K+  K     P  L  +     +GL ++ A+  ++  +   + SE R++      G 
Sbjct: 425 LRSKKVRKMDAAVPEFLKRLASFNESGLTLTMAIKALLNSNMGVLNSEIRKIWTDIEWGA 484

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              E++ R    +    +    T+I+  S+  G++ E L   +      ++ + +     
Sbjct: 485 DAKEALIRFEYRVNTASIRRVVTLITKASESTGDIKETLFIAAADAAAIQSEREERFLNM 544

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTS 148
           +   +  +I   +   +   +    
Sbjct: 545 LLYLSIIYISFFVFLYILYTLSTVF 569



 Score = 48.2 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 65/179 (36%), Gaps = 6/179 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQH-LGLS 64
           R +      P+A+  +      G+ + D    I    +    V  EF+ V++    LG+ 
Sbjct: 134 RQSAIDQMLPHAVTFMHAMRSGGMSLLDIFRAINEHREIYGEVTLEFQAVVQGVELLGMD 193

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L  S+       P   +  F    +   + GG+L + L   +   +     + K     +
Sbjct: 194 LITSLRHAATITPSDHLKNFFESTATHMESGGDLEKFLRTRADQFQAIAVQEHKTLLELL 253

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
              A  ++   +   +  +    S   M ++ +   G + L V  A  L  +M + L+I
Sbjct: 254 SMLAEVYVTAFVAGPLFLITILVS---MGMVSSGNTGQIDLLVYIAIPLGSVMFIWLLI 309


>gi|322806159|emb|CBZ03727.1| late competence protein ComGB, access of DNA to ComEA [Clostridium
           botulinum H04402 065]
          Length = 396

 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 61/182 (33%), Gaps = 8/182 (4%)

Query: 2   KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           K++ K R+ K    D     + +   + +G+ ++DA+ ++    ++         I    
Sbjct: 45  KNIFKIRSEKITLKDCSILCNKLYMLMASGINITDAINIVYEDFNNVHVKNSLYTIRNNI 104

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           L      +  +            F   +    +  G +   L++L     ++     +++
Sbjct: 105 LRGDSIYNSFK----GFSNIYPKFLLSMIYIGEESGRIQYVLSDLKNFYENKYKFNKEIK 160

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA---FMLIGIM 177
              +           + + +  +V  +  G  N L        L  + A     +++GI+
Sbjct: 161 NALIYPIIVLIAFIIMLYILIHMVVPSFIGIFNELGGSIPKKTLGMITAIKVFNVILGIL 220

Query: 178 VM 179
            +
Sbjct: 221 FI 222



 Score = 36.3 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           N  + +   +++G+P++ ++ ++   + + +  E  +     +L  ++ +  S  +    
Sbjct: 265 NFSNSMNLMIKSGIPINKSLKLLEEVTDNYIFKENIK-----NLNKNIKDGKSISISLNK 319

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               +     +    +  G L E+  ++ +IL+     K KV    +E     ++   + 
Sbjct: 320 CGFSNKILLSMVHIGEESGRLEESFYSVYKILKKDLEEKLKVGVKLIEPTIIIFMSLIIC 379

Query: 138 FCVSTLVYFT 147
                +    
Sbjct: 380 IIFIYVFIPM 389


>gi|168180496|ref|ZP_02615160.1| bacterial type II secretion system protein F [Clostridium botulinum
           NCTC 2916]
 gi|182668647|gb|EDT80625.1| bacterial type II secretion system protein F [Clostridium botulinum
           NCTC 2916]
          Length = 396

 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 61/182 (33%), Gaps = 8/182 (4%)

Query: 2   KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           K++ K R+ K    D     + +   + +G+ ++DA+ ++    ++         I    
Sbjct: 45  KNIFKIRSEKITLKDCSILCNKLYMLMASGINITDAINIVYEDFNNVHVKNSLYTIRNNI 104

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           L      +  +            F   +    +  G +   L++L     ++     +++
Sbjct: 105 LRGDSIYNSFK----GFSNIYPKFLLSMIYIGEESGRIQYVLSDLKNFYENKYKFNKEIK 160

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA---FMLIGIM 177
              +           + + +  +V  +  G  N L        L  + A     +++GI+
Sbjct: 161 NALIYPIIVLIAFIIMLYILIHMVVPSFIGIFNELGGSIPKKTLGMITAIKVFNVILGIL 220

Query: 178 VM 179
            +
Sbjct: 221 FI 222



 Score = 37.0 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           N  + +   +++G+P++ ++ ++   + + +  E  +     +L  ++ +  S  +    
Sbjct: 265 NFSNSMNLMIKSGIPINKSLKLLEEVTDNYIFKENIK-----NLNKNIKDGKSISISLNK 319

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               +     +    +  G L E+  ++ +IL+     K KV    +E     ++   + 
Sbjct: 320 CGFSNKILLSMVHIGEESGRLEESFYSVYKILKKDLEEKLKVSVKLIEPTIIIFMSLIIC 379

Query: 138 FCVSTLVYFT 147
                +    
Sbjct: 380 IIFIYVFIPM 389


>gi|150399783|ref|YP_001323550.1| type II secretion system protein [Methanococcus vannielii SB]
 gi|150012486|gb|ABR54938.1| type II secretion system protein [Methanococcus vannielii SB]
          Length = 298

 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 68/158 (43%), Gaps = 1/158 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV-IETQHLG 62
           + + +  KF  + P AL ++V S+ +G  + +A+  ++      V S F ++ +      
Sbjct: 77  MYESKMEKFDSNLPKALYVMVLSLDSGRSIVEAINEVIRSGIPEVDSVFSKIVLLMTEKK 136

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           LS  +S+  +   +  +     S +I    + GG L+  L  L++ L D +N+K+++ ++
Sbjct: 137 LSFEDSMMLVSNSLDSKLFRQISRLIIENRKYGGELANTLKKLAKTLEDLQNLKSQLISV 196

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
           +    A   +I       +  +       ++ L     
Sbjct: 197 TGNGLAVGLVILCGVIPATAGLIGGYLTVISQLAPTMP 234


>gi|152991304|ref|YP_001357026.1| general secretory pathway protein F [Nitratiruptor sp. SB155-2]
 gi|151423165|dbj|BAF70669.1| general secretory pathway protein F [Nitratiruptor sp. SB155-2]
          Length = 412

 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 64/155 (41%), Gaps = 9/155 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            LD +   + AGLP++ ++   V  +    +++ F +++E    G+SL  S+ R  R + 
Sbjct: 77  LLDQLAIMLDAGLPLNFSLEETVKNEKDPMLKAIFTQILEDIESGMSLYASVERFKRQLG 136

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  S  +    +  G L+E +A+LS+I ++  + + K +  +       +II ++ 
Sbjct: 137 -----TLSLSLFRLGEETGTLAEQIAHLSQIYQEILDNRRKFRKATRYPI---FIIVAMS 188

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
              + +     P +            L      ++
Sbjct: 189 IAFAIVTILVIPQFEEFFKESGMQLPLPTRFLLWL 223


>gi|41615061|ref|NP_963559.1| hypothetical protein NEQ268 [Nanoarchaeum equitans Kin4-M]
 gi|40068785|gb|AAR39120.1| NEQ268 [Nanoarchaeum equitans Kin4-M]
          Length = 293

 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 65/187 (34%), Gaps = 5/187 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH-L 61
            I +R A    + P A   +      G P       +        +R E + ++E    L
Sbjct: 107 RIPQRKASIEKNLPYATLYMATIANTGAPPIAIFRFLSRMPDFGEIRQEAKDIVEMVDVL 166

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L  ++ +  +Y P ++ +     +    + GG+LSE L  +S +       K +   
Sbjct: 167 GQDLLRALDKKAKYSPSKQWAELLIGLKTILESGGDLSEYLYRMSDLYSRELRRKVQQFG 226

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI---MV 178
             +      ++   +      ++     G M   I   +   +L +     ++ I    +
Sbjct: 227 DLLMMVVEMYLTLVIVGGFFMIILSLIMGGMGGDIEAIKVMHILLLGLVIPIVSIGLAFM 286

Query: 179 MRLMINF 185
           ++ M+  
Sbjct: 287 IKSMLPI 293


>gi|332534353|ref|ZP_08410194.1| type II secretion system protein [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036172|gb|EGI72646.1| type II secretion system protein [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 271

 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 56/156 (35%), Gaps = 4/156 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQH 60
              +R     +     L +++  +RAG  +  + A+ V        P+  E +  +    
Sbjct: 109 RKNQRKTVINNSLEFFLRVLLVYMRAGFSLERSFALAVDHGLSQKHPLYKELKLFLFELS 168

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALA-NLSRILRDRKNMKAKV 119
            G     + + +     +  +   + ++ + S+LG  L +A+   L  +   +  + AK 
Sbjct: 169 AGKDREFAFNSLFERTGVLGIKKLTNLMLIGSKLGTPLIQAVEAQLEGLALKKNILLAKK 228

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                       I+   P  +  + +  +   MNVL
Sbjct: 229 VNKKAMHTTFPIILICFPMFLVLVFFPAALQVMNVL 264


>gi|307131441|ref|YP_003883457.1| general secretion pathway protein F [Dickeya dadantii 3937]
 gi|306528970|gb|ADM98900.1| General secretion pathway protein F [Dickeya dadantii 3937]
          Length = 406

 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/184 (11%), Positives = 58/184 (31%), Gaps = 7/184 (3%)

Query: 7   KRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +R  +    D       +   + AG+P+ +A+  + GQ+           +  Q     +
Sbjct: 60  RRYERLSTLDLALLTRQLASLLDAGIPLEEALTALAGQADKQAVGVVLNAVRQQL----I 115

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           +     M         +     +    +  G L+  L  L+  L  ++  K  +    + 
Sbjct: 116 AGVSFAMALQTLPHSFNRLYCAMVAAGEATGCLALVLIRLADYLDQQQKTKNTLIQALLY 175

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMI 183
               A +   +   + + V       +  +          LL ++      G +++ +++
Sbjct: 176 PALLAVMSIIVVSVLLSSVVPQVVTQLQQMHVALPLTTRALLTMSDLLNQYGWILLIVLV 235

Query: 184 NFDV 187
              V
Sbjct: 236 ALAV 239


>gi|288918386|ref|ZP_06412739.1| type II secretion system protein [Frankia sp. EUN1f]
 gi|288350281|gb|EFC84505.1| type II secretion system protein [Frankia sp. EUN1f]
          Length = 492

 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/219 (9%), Positives = 53/219 (24%), Gaps = 36/219 (16%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + ++ +  A+      + L  +   + AG    DA+   +   +            +   
Sbjct: 42  RWVVHRYEAELRGAAEDVLAAVATELDAGASPDDALRTALASVTGLPAHPHSGEAHSGDG 101

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEA---------------LANLS 106
                    R             +  + +                          L  L+
Sbjct: 102 RRGGGRQSRRSDSRRGGGRSGRAAGSLDLPRLRELLADADADDAPRLLSRCDAGALRQLA 161

Query: 107 RILRDRKNMKAKVQA---------------------LSMEAKASAWIIGSLPFCVSTLVY 145
              R  +    ++                            ++S  ++  LP     +  
Sbjct: 162 TAFRVCRLTGVRLAPVAVMLADAARSDAARADELAAALAGPRSSGRLVAGLPLLGVAMGI 221

Query: 146 FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                 ++VL   P G + L    +  L G+  +R + +
Sbjct: 222 LLGAAPVDVLTTSPVGTLCLAAGVSLDLAGLRWLRRISD 260


>gi|221133817|ref|ZP_03560122.1| type IV pilus biogenesis protein PilC [Glaciecola sp. HTCC2999]
          Length = 399

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 49/157 (31%), Gaps = 9/157 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       I   + AG+ +     +I  GQ+   V+     + +    G  +++S+ +  
Sbjct: 61  DIAIITRQIATMLCAGVNILKTFEMIAAGQTKPSVKKMLSEIADDVRAGNPIAQSLRKYP 120

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G L      LS      + +K+K++       A   ++
Sbjct: 121 SQ-----FDTLYCDLVDTGEQSGRLDTIFEQLSIYKEKAEALKSKIKKAMFYPLA---VV 172

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
                   TL+ F  P +  +  +      +L     
Sbjct: 173 IVALMVTVTLLVFVVPQFQMIFNSFGAELPVLTQMIL 209



 Score = 34.3 bits (77), Expect = 8.7,   Method: Composition-based stats.
 Identities = 10/136 (7%), Positives = 37/136 (27%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                    +  ++ AG+P+  A+        +   R     + +    G+ +  ++   
Sbjct: 264 AAIARFTRTLATTMTAGVPLITALDSAANASGNAVYRDAIGSMRKEVSSGIPMFVAMGA- 322

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G + + L  ++ I   + +         +E      +
Sbjct: 323 -----TNVFPDMVVQMIAIGEESGAIDDMLLKVTTIYEAQVDDMIDGLTSLLEPLIMTVL 377

Query: 133 IGSLPFCVSTLVYFTS 148
              +   ++ +     
Sbjct: 378 GLVIGGLITAMYLPIF 393


>gi|289747493|ref|ZP_06506871.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289688021|gb|EFD55509.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
          Length = 165

 Score = 48.2 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 39/105 (37%)

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +    + S  G  ++  +    R + +R+   A+V A    A+ASA I+  LP  
Sbjct: 57  YWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILPLL 116

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
              L        ++ L+    G  LL V       G++    + +
Sbjct: 117 GVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITD 161


>gi|332982942|ref|YP_004464383.1| Type II secretion system F domain-containing protein [Mahella
           australiensis 50-1 BON]
 gi|332700620|gb|AEE97561.1| Type II secretion system F domain protein [Mahella australiensis
           50-1 BON]
          Length = 250

 Score = 48.2 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 55/150 (36%), Gaps = 1/150 (0%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K+R  K  ++ P  ++++V+ +   +PV + +  I       +R   +  I+  +LG+ L
Sbjct: 97  KQRLMK-DNELPTVVNLLVQGLSVEMPVENILQYIADNKHGAMRDIIKGAIDNINLGIPL 155

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +S+         +     + +++   +    L+  L ++   + + +          ++
Sbjct: 156 EQSLQEAAEKSMNKYFQRVTRILTKSKESSKGLAAQLQDVLSDMEEERLNTKLSHVNMLD 215

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                 +       +  ++       M  L
Sbjct: 216 NALFFVVFLGYFLPLIVMILMPMITSMGFL 245


>gi|76803231|ref|YP_331326.1| transmembrane protein (type II secretion system proteins TadC)
           [Natronomonas pharaonis DSM 2160]
 gi|76559096|emb|CAI50694.1| transmembrane protein (homolog 5 to type II secretion system
           proteins TadC) [Natronomonas pharaonis DSM 2160]
          Length = 568

 Score = 48.2 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 57/178 (32%), Gaps = 7/178 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI-ETQHLG 62
             + RT  F +  P+AL ++ R V  G+ V  AVA    +        F       + L 
Sbjct: 338 AARDRTDAFDESLPDALYLVGRRVSDGVSVERAVADAAEELDGVAGEVFTDAARRQRRLR 397

Query: 63  LSLSESI---SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           + +  +       +  +  +     + +  V +  G     AL   +  L + + ++ + 
Sbjct: 398 VDIETAFRGSHGALEELTSRRAESAARLFGVAANAGAPAGRALIETADHLDELRRVETEA 457

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM---NVLINDPRGHMLLGVAAAFMLI 174
           +    +   +     +    +           +     L         +G+A  + ++
Sbjct: 458 RRDLGQVTTTLSNTAAFFGPLVGGATVALADSVGTAEALDGSVPETAGIGLAVGWYVL 515


>gi|311280916|ref|YP_003943147.1| Type II secretion system F domain-containing protein [Enterobacter
           cloacae SCF1]
 gi|308750111|gb|ADO49863.1| Type II secretion system F domain protein [Enterobacter cloacae
           SCF1]
          Length = 384

 Score = 48.2 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/158 (12%), Positives = 52/158 (32%), Gaps = 6/158 (3%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            + +  +   ++AGL +S+ + ++  Q      ++  + +      G  LSE++S     
Sbjct: 43  SDLMQQLATLLQAGLTLSEGLTLLSEQHPSAQWQALLQDMAVRLAQGSPLSEAMSEWPEV 102

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P    +          ++ G L     +L+R  + ++ +  KV            +  +
Sbjct: 103 FPPLYPAT-----IRAGEMTGRLEHCCFHLARQQQAQQRLAQKVAKALRYPLVVILLAVA 157

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           +   +   V                    + +A +  +
Sbjct: 158 VIIGMCGFVLPEFAQIYRTFNTPLPTLTRMVMALSVWV 195


>gi|20091915|ref|NP_617990.1| hypothetical protein MA3097 [Methanosarcina acetivorans C2A]
 gi|19917113|gb|AAM06470.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 383

 Score = 48.2 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 63/185 (34%), Gaps = 3/185 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + + +  +      + P AL  +      G    D +  +  +    +  E  +V+    
Sbjct: 190 LYNKVSNKNMNIQHEIPFALSYMSVLASGGSSPLDVIRRVAAEDYGEISRELSKVMYRID 249

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                 + ++S +++    + +      IS   Q GG L   L   S+ L + +    K 
Sbjct: 250 ALGEDGNTAMSYLIQNTSSEHLRAVCIDISNAMQAGGGLQAYLELKSKELMEMRRQAQKA 309

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN--DPRGHMLLGVAAAFMLIGIM 177
              S+      ++ G +   V  ++       + + +    PR      V  A   I +M
Sbjct: 310 FVDSLSIYGEGYLSGIVMSVVLVVLMIVICSALGIDLKIMTPRQLFNFFVYFALPFINLM 369

Query: 178 VMRLM 182
            + ++
Sbjct: 370 FILML 374


>gi|330502647|ref|YP_004379516.1| general secretion pathway protein F [Pseudomonas mendocina NK-01]
 gi|328916933|gb|AEB57764.1| general secretion pathway protein F [Pseudomonas mendocina NK-01]
          Length = 405

 Score = 48.2 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 51/161 (31%), Gaps = 9/161 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            D       +   ++A LP+ +A+       +S  ++     V      G SL+ S+   
Sbjct: 66  RDLALVTRQLATLIQAALPIEEALRAAAAQSTSSRIQGMLLAVRARVLEGHSLAGSLKEF 125

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P               +  G+L   L  L+      +  + KVQ   +       +
Sbjct: 126 PAAFP-----ELYRATVAAGEHAGHLGLVLEQLADYTEQHQQSRQKVQLALLYPV---IL 177

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           + +    V  L+ +  P  + V ++  +    L      + 
Sbjct: 178 MCASLLIVGFLLGYVVPDVVKVFVDSGQTLPALTRGLIALS 218



 Score = 37.8 bits (86), Expect = 0.67,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 46/130 (35%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
               +    R+G+P+ +A+A+      + V   E     +    G SL+ S+    ++ P
Sbjct: 274 FASTLAILTRSGVPLVEALAIAGEVIGNRVIRGEVVVAAQKVREGGSLTRSLEASGQFPP 333

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         +    +  G L + LA  ++   +  + +  +     E     ++   + 
Sbjct: 334 M------MLHMIASGERSGELDQMLARTAKNQENDLSAQIALLVGLFEPFMLVFMGAVVL 387

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 388 VIVLAILLPI 397


>gi|284031223|ref|YP_003381154.1| type II secretion system protein [Kribbella flavida DSM 17836]
 gi|283810516|gb|ADB32355.1| type II secretion system protein [Kribbella flavida DSM 17836]
          Length = 306

 Score = 48.2 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/154 (11%), Positives = 57/154 (37%), Gaps = 1/154 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   ++R   F     + LD++  ++  G  + +A+            +  R+ +    
Sbjct: 152 LRQEAEERRRDFRHVVGSFLDLVAMNLAGGRGLPEALMTASTIGDHWAMARIRQALANAR 211

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           L   +  ++++R+   + ++E+   ++ +++    G  +  +L   +  LR ++    + 
Sbjct: 212 LIGITPWDAMARLGDDLGVEELRDLASALALAGDEGAKIRASLLARAASLRRKELADVEG 271

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153
           +A           +      +  L Y      + 
Sbjct: 272 KAGERSQSMLVAQLVMCAAFMLFLGYPAGAAILG 305


>gi|332976168|gb|EGK13036.1| putative general secretion pathway protein F [Desmospora sp. 8437]
          Length = 350

 Score = 48.2 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 55/193 (28%), Gaps = 23/193 (11%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            K R     D        +   + AG P+  ++ ++  Q       E  R++ +   G S
Sbjct: 5   KKGRRKWNADRLTLFSQHLANLLEAGFPLVPSIRLLSEQG-VIGTREAERILGSLDQGKS 63

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           LS ++         + +    T +   ++  G+    L       R+R  +  ++     
Sbjct: 64  LSAALEA-------EGMPALFTSLIRAAEEHGDYGFGLKQCEVYYRERGRLIRELTRALT 116

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR---------------GHMLLGVAA 169
                  ++G     + T V          +                    G   L  A 
Sbjct: 117 YPMVVLMLVGLAFLFLMTTVVPRFSEMYETMGLTLPLYTRIFLRIHQSLQAGLFGLTAAL 176

Query: 170 AFMLIGIMVMRLM 182
               +  + +R +
Sbjct: 177 LLFGLICLYIRRL 189


>gi|226303994|ref|YP_002763952.1| hypothetical protein RER_05050 [Rhodococcus erythropolis PR4]
 gi|226183109|dbj|BAH31213.1| conserved hypothetical membrane protein [Rhodococcus erythropolis
           PR4]
          Length = 262

 Score = 48.2 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 67/164 (40%), Gaps = 1/164 (0%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           L++++  +  G   + A +V   + S  V + FR       LG S + +   +      +
Sbjct: 95  LEVLIAELSVGAHPAVASSVAGEECSGEVSAVFRSAGARARLGGS-AAAAFAVPDSCIER 153

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
           E S   +V  V  Q G  L+E L  +   +  R+  + + +A    A+A+A ++  LP  
Sbjct: 154 EFSRIGSVWRVADQHGLALAELLGAVRTDMLGRRRFRQRTEAGLAGARATAAVLAFLPLL 213

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
              L        + VL     G +LL +  A +  G++    + 
Sbjct: 214 GIGLGQLMGASPLRVLFGGGLGGVLLVIGTACVSAGLLWTDRIT 257


>gi|145631454|ref|ZP_01787224.1| putative type IV pilin secretion protein [Haemophilus influenzae
           R3021]
 gi|144982991|gb|EDJ90500.1| putative type IV pilin secretion protein [Haemophilus influenzae
           R3021]
          Length = 405

 Score = 48.2 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/162 (12%), Positives = 64/162 (39%), Gaps = 6/162 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71
             +    L+ +   +++ +P+ +++ ++    +  V +E+  R++++   GL+ S++I +
Sbjct: 56  NSEISELLNQLATLLQSAIPLKNSLQILQQNCTQIVLNEWLERLLQSIESGLAFSQAIEQ 115

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +Y+  QE       +    ++ G LS     ++        ++ K+Q + +       
Sbjct: 116 QGKYLTQQE-----IQLIQVGEMTGKLSVVCKRIATHRSQSLALQRKLQKIMLYPSMVLG 170

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           I   L   +   +        +    +      + ++ +  L
Sbjct: 171 ISLLLTLALLLFIVPQFAEMYSGNNAELPTITAILLSISNFL 212



 Score = 37.4 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 13/136 (9%), Positives = 43/136 (31%), Gaps = 3/136 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESIS--RM 72
             N    +   ++AG+P++ A+   + ++           ++  + +   L         
Sbjct: 263 LVNFSQSLQIMLQAGVPLNQALDSFLPRTQTWQTKTLVNDIVLDKEVRSILQWVSQGYAF 322

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +        +  I    +  G L+  L ++    +++ N +  + +  +E      I
Sbjct: 323 SDSVSSDLFPMEAQQILQIGEQSGKLALMLEHIVDNYQEKLNHQIDLLSQMLEPLMMVII 382

Query: 133 IGSLPFCVSTLVYFTS 148
              +   +  +     
Sbjct: 383 GSLIGIIMMGMYLPIF 398


>gi|290558836|gb|EFD92228.1| hypothetical protein BJBARM5_1029 [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 233

 Score = 48.2 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 51/113 (45%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K    KRT    +    A+  I+  V +G+P+ +A+  +   +   +  EF+  +E    
Sbjct: 112 KLQAVKRTKLIEEQVVFAIREIMIKVGSGVPIFNALLDVANGNYGIISDEFKLAVEEIES 171

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           G+  ++++  + R +P Q +     +I    + G +++  L  +  +L  ++ 
Sbjct: 172 GVPQNDALDHLARRVPSQSLRRAIDIILYAIKSGSDIAGTLELIHDMLIKKQQ 224


>gi|167766163|ref|ZP_02438216.1| hypothetical protein CLOSS21_00657 [Clostridium sp. SS2/1]
 gi|167712243|gb|EDS22822.1| hypothetical protein CLOSS21_00657 [Clostridium sp. SS2/1]
 gi|291560102|emb|CBL38902.1| Type II secretory pathway, component PulF [butyrate-producing
           bacterium SSC/2]
          Length = 346

 Score = 48.2 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/156 (8%), Positives = 45/156 (28%), Gaps = 5/156 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           +     ++       +   +++G+    ++  I        ++E + +++       L  
Sbjct: 2   KKKLSNEELITFCGQMALILKSGIS---SLEGIYIMEDGDAQTEGKEILKEIREE--LEM 56

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
                           ++  ++   +  G L E +  L+   +  +     V++      
Sbjct: 57  CGMLYPAMEKTGVFPEYALHMTEIGEQTGRLDETMEALAAYYQREEETLDAVKSAVTYPI 116

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
           A   ++  +   +   V          L  +  G  
Sbjct: 117 AMLGMLLVIVAVLFIKVMPVFEQVYMQLGQEMTGVA 152


>gi|327463769|gb|EGF10085.1| bacterial type II secretion system protein F [Streptococcus
           sanguinis SK1057]
          Length = 408

 Score = 48.2 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/171 (10%), Positives = 50/171 (29%), Gaps = 4/171 (2%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
               L D       +   + +G+P+++AV ++  Q++        +++       S    
Sbjct: 57  KKIKLKDISLFCKQMSVMLESGIPLNNAVDILEQQATSKNLKSSLKIVSKSLKEGS---- 112

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                              +    +  G L E L  +S           +++   +    
Sbjct: 113 QLSKAMIDQEGMFPDLLIRMVQAGEKTGKLDEVLEKMSEHYNKELKTSRQIRGAMIYPAV 172

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            A++  +    +  +V  +  G              + +AA+  +     +
Sbjct: 173 LAFLAVAAVLALLYVVIPSFSGIFEQSGMAMPLPTRIVLAASNFVRSYWYI 223



 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+ +A+      +++ V  E  ++         L +           
Sbjct: 270 FASTLAILTSAGIPLVEAIESAAATTNNAVVIEKMKIANE-----GLQKGERLTGMITAT 324

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G+L   L   S    +      K     +E      +   +  
Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLVKTSDYYEEELETAIKQLLSLLEPAMIIVMGVIIGG 384

Query: 139 CVSTLVYFTS 148
            V++++    
Sbjct: 385 IVASVMLPMF 394


>gi|324996179|gb|EGC28089.1| bacterial type II secretion system protein F [Streptococcus
           sanguinis SK678]
          Length = 408

 Score = 48.2 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/171 (10%), Positives = 50/171 (29%), Gaps = 4/171 (2%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
               L D       +   + +G+P+++AV ++  Q++        +++       S    
Sbjct: 57  KKIKLKDISLFCKQMSVMLESGIPLNNAVDILEQQATSKNLKSSLKIVSKSLKEGS---- 112

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                              +    +  G L E L  +S           +++   +    
Sbjct: 113 QLSKAMIDQEGMFPDLLIRMVQAGEKTGKLDEVLEKMSEHYNKELKTSRQIRGAMIYPAV 172

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            A++  +    +  +V  +  G              + +AA+  +     +
Sbjct: 173 LAFLAVAAVLALLYVVIPSFSGIFEQSGMAMPLPTRIVLAASNFVRSYWYI 223



 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+ +A+      +++ V  E  ++         L +           
Sbjct: 270 FASTLAILTSAGIPLVEAIESAAATTNNAVVIEKMKIANE-----GLQKGERLTGMITAT 324

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G+L   L   S    +      K     +E      +   +  
Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLVKTSDYYEEELETAIKQLLSLLEPAMIIVMGVIIGG 384

Query: 139 CVSTLVYFTS 148
            V++++    
Sbjct: 385 IVASVMLPMF 394


>gi|313682350|ref|YP_004060088.1| type ii secretion system f domain [Sulfuricurvum kujiense DSM
           16994]
 gi|313155210|gb|ADR33888.1| Type II secretion system F domain [Sulfuricurvum kujiense DSM
           16994]
          Length = 405

 Score = 48.2 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 59/167 (35%), Gaps = 5/167 (2%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R              +   + AG+P+  ++ ++  QS    R E  R  +T    +   
Sbjct: 56  RRDTLSSGALSQLSRDLAVYLNAGVPLVRSLTLLRHQSRSDSRME--RFYDTLIEHIHEG 113

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S ++ +       +  F       S+  G L++ L  LS  L  ++ +K ++    +  
Sbjct: 114 KSFAQALDMQEFYTLPVFYVGTLKISEDRGILAQVLNELSHYLNIQEKIKKQLSQAMVYP 173

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
               +II      +S ++    P   +V  +  +   +L        
Sbjct: 174 S---FIIIVAVLMISFMLTVVVPKITSVFESTGQPLPMLTQWVISSA 217


>gi|145632541|ref|ZP_01788275.1| putative type IV pilin secretion protein [Haemophilus influenzae
           3655]
 gi|229844999|ref|ZP_04465136.1| putative type IV pilin secretion protein [Haemophilus influenzae
           6P18H1]
 gi|144986736|gb|EDJ93288.1| putative type IV pilin secretion protein [Haemophilus influenzae
           3655]
 gi|229812133|gb|EEP47825.1| putative type IV pilin secretion protein [Haemophilus influenzae
           6P18H1]
          Length = 406

 Score = 48.2 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 64/162 (39%), Gaps = 6/162 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71
             +    L+ +   +++ +P+ +++ ++    +  + +E+  R++++   GL+ S++I +
Sbjct: 56  NSEISELLNQLATLLQSAIPLKNSLQILQQNCTHIMLNEWLERLLQSIEAGLAFSQAIEQ 115

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +Y+  QE       +    ++ G L+     ++        ++ K+Q + +       
Sbjct: 116 QGKYLTQQE-----IQLIQVGEMTGKLAVVCKKIATHRSQSLALQRKLQKIMLYPSMVLG 170

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           I   L   +   +        +    +      + ++ +  L
Sbjct: 171 ISLLLTLALLLFIVPQFAEMYSGNNAELPTITAILLSISNFL 212



 Score = 38.6 bits (88), Expect = 0.46,   Method: Composition-based stats.
 Identities = 12/137 (8%), Positives = 44/137 (32%), Gaps = 4/137 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS--EFRRVIETQHLGLSLSESIS--R 71
             N    +   ++AG+P++ A+   + ++            ++  + +   L        
Sbjct: 263 LVNFSQSLQIMLQAGVPLNQALDSFLPRTQTWQTKKTLVNDMVLDKEVRSILQWVSQGYA 322

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
               +        +  +    +  G L+  L +++   +++ N +  + +  +E      
Sbjct: 323 FSNSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIAENYQEKLNHQINLLSQMLEPLIMVI 382

Query: 132 IIGSLPFCVSTLVYFTS 148
           I   +   +  +     
Sbjct: 383 IGSLIGIIMMGMYLPIF 399


>gi|260596530|ref|YP_003209101.1| type IV pilin biogenesis protein [Cronobacter turicensis z3032]
 gi|260215707|emb|CBA28060.1| Protein transport protein hofC [Cronobacter turicensis z3032]
          Length = 406

 Score = 48.2 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/163 (11%), Positives = 53/163 (32%), Gaps = 6/163 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           A+  +   ++AG+ ++  +A++  Q      +++R +       L    + S  +R  P 
Sbjct: 69  AVRQLAALLQAGVSLTQGLAMLSSQHP---VAQWRALFAQLAKQLGRGVAFSETLRQWP- 124

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +L G L      L++   D++ ++ +V            +   L  
Sbjct: 125 DIFPPLYISLMRTGELTGKLDMCCQQLAQQQEDQQKLRKQVIKALRYPAFIFTVALLLTL 184

Query: 139 CVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVM 179
            ++  V                     ++ ++   M   +  +
Sbjct: 185 GMTCFVLPQFTAIYRSFNTPLPLVTRAVIALSEGLMQYAVWWL 227



 Score = 37.4 bits (85), Expect = 1.00,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 45/127 (35%), Gaps = 7/127 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +     AG+P+  +++ +    +S   R   RRV E    GL L  ++ +          
Sbjct: 276 LSLMQGAGIPLLQSLSSVEETLASPLWRQAVRRVKEGIASGLPLWRALEQ------ETVF 329

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           +     +    +  G+L   L  L+     + + +A+  A ++E      I   +   V 
Sbjct: 330 TALCIQLVRTGEETGSLDLMLEKLAGWHLAQTSERAQTLAATLEPLMMMVIGLIVGTLVV 389

Query: 142 TLVYFTS 148
            +     
Sbjct: 390 AMYLPIF 396


>gi|77919283|ref|YP_357098.1| type II secretory pathway, component PulF [Pelobacter carbinolicus
           DSM 2380]
 gi|77545366|gb|ABA88928.1| type II secretory pathway, component PulF [Pelobacter carbinolicus
           DSM 2380]
          Length = 402

 Score = 48.2 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 57/163 (34%), Gaps = 7/163 (4%)

Query: 23  IVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           ++  +++G+P+   +A ++  Q S   ++    V  +   G SLSE+ +    Y P    
Sbjct: 72  MLVLLKSGMPILQILASLVHDQDSANTKNVLTEVFTSVKGGRSLSEAFAGFPEYFPG--- 128

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                      +  G+L + LA      +    +K ++++ ++           +   + 
Sbjct: 129 --LYVASVASGEKTGDLPQTLARYLGYQKRMAQVKDRLKSAALYPLVLVAATILVLLFMV 186

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI-GIMVMRLMI 183
             V  +                   +  A +   G  V+ +++
Sbjct: 187 FFVIPSFVQIYADAQVSLPFLTRFVLGLADLAARGWFVVLVLV 229



 Score = 40.1 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 7/134 (5%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVR 74
             N        + +GLP+ +A+ +  G  ++ V  E   +VI   + G SL  ++ R   
Sbjct: 268 LVNFSRTTATILSSGLPLIEAMQLAGGVLNNTVLQEGVTKVIGAVNEGDSLGNALERHA- 326

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                     +  +    +  G L      ++       + K    A   E     ++  
Sbjct: 327 -----SFPQIAVRMIATGEKTGTLGLMFEEVAEYYESEIDHKLDRLAALAEPLILLFVGL 381

Query: 135 SLPFCVSTLVYFTS 148
            +   V  +     
Sbjct: 382 VIGGIVIAIYLPIF 395


>gi|158312181|ref|YP_001504689.1| type II secretion system protein [Frankia sp. EAN1pec]
 gi|158107586|gb|ABW09783.1| type II secretion system protein [Frankia sp. EAN1pec]
          Length = 519

 Score = 48.2 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 61/204 (29%), Gaps = 20/204 (9%)

Query: 1   MKHLIKKRTA-KFLDDFPNALDIIVRSVRAGLPVSDAVAVI------------------- 40
           ++    +R   +      + L  +   + AG    +A+                      
Sbjct: 50  IRRAADQRYEAELRGAAEDVLAALSTELDAGAAPDEALRTALYSVGDLPTRPGRRRRGAG 109

Query: 41  VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSE 100
            GQ+    ++     +      L  +E  +R++       +   +T   V    G  L+ 
Sbjct: 110 HGQAGVTGQAAGGLDLARLRELLPGAEDPARLLARCEAPALRQLATAYRVCRLAGVRLAP 169

Query: 101 ALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
               L+   R       ++ +     ++S  ++  LP     L        + VL+    
Sbjct: 170 VATMLADAARADAARADELASALAGPRSSGRLVAGLPLLGLALGALVGASPVEVLLTGSA 229

Query: 161 GHMLLGVAAAFMLIGIMVMRLMIN 184
           G   L       L G+  +R + +
Sbjct: 230 GRACLTAGVLLDLAGLRWLRRIAD 253


>gi|164686715|ref|ZP_02210743.1| hypothetical protein CLOBAR_00310 [Clostridium bartlettii DSM
           16795]
 gi|164604105|gb|EDQ97570.1| hypothetical protein CLOBAR_00310 [Clostridium bartlettii DSM
           16795]
          Length = 395

 Score = 48.2 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 54/162 (33%), Gaps = 9/162 (5%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L   R      D       I   + +G  ++    V+  Q++  ++   +++      
Sbjct: 46  RKLFSTRKKLSSKDLKILCKEIGILLESGSEITGLFQVLEKQANKKLKPVIKQISNGIQA 105

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S++ES             S F   +    +L  NL + +  LS        +K KV++
Sbjct: 106 GNSITESFRN------TNAFSKFFISMVHTGELSSNLDQVMYTLSDYYDKEARLKGKVKS 159

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
            S+       +  +    V  +++   P Y  V         
Sbjct: 160 ASVYPI---ILFVATILSVLAMLFLVIPKYEEVYSQSTVEMP 198



 Score = 34.3 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 12/126 (9%), Positives = 42/126 (33%), Gaps = 5/126 (3%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   +++G+ + +A+ +         +  +  +++  +     ++    +     +    
Sbjct: 269 LYILIKSGVEIVNAIEISAKVVDK--KYIYDVILDANNSIKEGNKVGESL---NDINLFP 323

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
                +    +  G L EAL  +++      + K +V     E   +  +   +   V  
Sbjct: 324 TMFITMVSVGEESGKLEEALEMINKFYEGEIDQKTEVTMKYFETGITLVMGLIVGVVVIA 383

Query: 143 LVYFTS 148
           +V    
Sbjct: 384 MVIPMF 389


>gi|317403490|gb|EFV83996.1| flp pilus assembly protein TadC [Achromobacter xylosoxidans C54]
          Length = 256

 Score = 48.2 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 58/129 (44%), Gaps = 5/129 (3%)

Query: 30  GLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           GL +  ++ V++ + +     +  E R   E    G +  +S++R+       ++S    
Sbjct: 121 GLSIDQSLQVLIKEFAQVLPVLAYELRLASELYVRGRTREQSLARLAAGFDNDDLSAICR 180

Query: 87  VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
           +I+   Q GG + E L      LR+++ ++ K +      K +A +I +L   +  L+  
Sbjct: 181 LIAQVDQHGGAVQEPLNRFGERLREKRRLELKEKVGKTTVKMTAVMIVTLLPAL--LIVT 238

Query: 147 TSPGYMNVL 155
              G++ VL
Sbjct: 239 GGAGFVAVL 247


>gi|168704472|ref|ZP_02736749.1| type 4 fimbrial assembly protein pilC [Gemmata obscuriglobus UQM
           2246]
          Length = 399

 Score = 48.2 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/169 (11%), Positives = 57/169 (33%), Gaps = 8/169 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                    +   + +G+P+  ++ ++    ++  ++S  R V      G  L++S++  
Sbjct: 62  RQVATMYAQLADLLHSGVPLLRSLELLERQSTNKLLQSVLRDVRARVADGTGLAQSMAAH 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +       +  +  +    Q GG L + L  ++  +  ++++K+KV          A  
Sbjct: 122 PK-----VFNELAVSMVRAGQEGGFLEDVLKRIAAFVEHQEDLKSKVVGAMAYPVFLALA 176

Query: 133 IGSLPFCVSTLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVM 179
              +   +              L   +       L +  +  + G   +
Sbjct: 177 GAGVVAVLMVFFVPKFEPIFEKLKEKDQMPDITSLLLDVSHFIQGYWWL 225



 Score = 36.3 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/135 (7%), Positives = 37/135 (27%), Gaps = 7/135 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                  I+   +  G+P+  ++ +    + + + S                 +  ++  
Sbjct: 268 ALSRFCRILGTMLHNGIPLLKSLTIAKDSTGNKLLSASIEKAAENV------TAGQKLAD 321

Query: 75  YMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
            +            +   ++    L + L +++  L  R     ++    +E      + 
Sbjct: 322 PLRKSGHFPNDLVEMITIAEEANTLEKVLVDVADGLDKRTARNLELMVKLLEPLMLLCMA 381

Query: 134 GSLPFCVSTLVYFTS 148
             +      L+    
Sbjct: 382 AVVGTIAVALLMPVF 396


>gi|327471793|gb|EGF17234.1| bacterial type II secretion system protein F [Streptococcus
           sanguinis SK408]
          Length = 408

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/171 (10%), Positives = 50/171 (29%), Gaps = 4/171 (2%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
               L D       +   + +G+P+++AV ++  Q++        +++       S    
Sbjct: 57  KKIKLKDISLFCKQMSVMLESGIPLNNAVDILEQQATSKNLKSSLKIVSKSLKEGS---- 112

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                              +    +  G L E L  +S           +++   +    
Sbjct: 113 QLSKAMLDQEGMFPDLLIRMVQAGEKTGKLDEVLEKMSEHYNKELKTSRQIRGAMIYPAV 172

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            A++  +    +  +V  +  G              + +AA+  +     +
Sbjct: 173 LAFLAVAAVLALLYVVIPSFSGIFEQSGMAMPLPTRIVLAASNFVRSYWYI 223



 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+ +A+      +++ V  E  ++         L +           
Sbjct: 270 FASTLAILTSAGIPLVEAIESAAATTNNAVVIEKMKIANE-----GLQKGERLTGMITAT 324

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G+L   L   S    +      K     +E      +   +  
Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLVKTSDYYEEELETAIKQLLSLLEPAMIIVMGVIIGG 384

Query: 139 CVSTLVYFTS 148
            V++++    
Sbjct: 385 IVASVMLPMF 394


>gi|302553402|ref|ZP_07305744.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
 gi|302471020|gb|EFL34113.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
          Length = 307

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 62/156 (39%), Gaps = 4/156 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++    ++           LD++  S+  G  + +A+      S        R  +    
Sbjct: 152 VRRDAAEKRRDLRRVIGAYLDLVSMSLAGGRGLPEALMAAAEVSDGWANQRIRNALSDAR 211

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           +   S  +++  +   + ++E+   S  +++ +  G  + E+LA+ +  +R R+  + + 
Sbjct: 212 ITGVSQWQALGALGEELGVEELKDLSASLALVADDGAKVRESLASRAETMRHRELAEIE- 270

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
              S   K+ + ++  L  C   LV+   P  M V 
Sbjct: 271 --GSAGEKSQSMLVAQLLLCAGFLVFLIFPAAMRVF 304


>gi|145628636|ref|ZP_01784436.1| putative type IV pilin secretion protein [Haemophilus influenzae
           22.1-21]
 gi|144979106|gb|EDJ88792.1| putative type IV pilin secretion protein [Haemophilus influenzae
           22.1-21]
          Length = 405

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 70/174 (40%), Gaps = 9/174 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71
             +    L+ +   +++ +P+ +++ ++    +  + +E+  R++++   GL+ S++I +
Sbjct: 56  NSEISELLNQLATLLQSAIPLKNSLQILQQNCTQIMLNEWLERLLQSIESGLAFSQAIEQ 115

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +Y+  QE       +    ++ G L+     ++        ++ K+Q + +       
Sbjct: 116 QGKYLTQQE-----IQLIQVGEMTGKLAVVCKKIATHRSQSLALQRKLQKIMLYPSMVLG 170

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML---IGIMVMRLM 182
           I   L   +   +        +    +      + ++ +  L   IGI++   +
Sbjct: 171 ISLLLTLALLLFIVPQFAEMYSGNNAELPTITAILLSISNFLKQNIGILLFFAL 224



 Score = 39.7 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/136 (8%), Positives = 44/136 (32%), Gaps = 3/136 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESIS--RM 72
             N    +   ++AG+P++ A+   + ++           ++  + +   L         
Sbjct: 263 LVNFSQSLQIMLQAGVPLNQALDSFLPRTQTWQTKTLVNDIVLDKEVRSILQWVSQGYAF 322

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +        +  +    +  G L+  L +++   +++ N +  + +  +E      I
Sbjct: 323 SDSISSDLFPMEAQQMLQIGEQSGKLALMLEHIADNYQEKLNHQIDLLSQMLEPLMMVII 382

Query: 133 IGSLPFCVSTLVYFTS 148
              +   +  +     
Sbjct: 383 GSLIGIIMMGMYLPIF 398


>gi|258511183|ref|YP_003184617.1| hypothetical protein Aaci_1197 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477909|gb|ACV58228.1| hypothetical protein Aaci_1197 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 293

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 61/172 (35%), Gaps = 7/172 (4%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--TQHLGLSLSESI 69
           F      A+ I + ++RA   +  A   +   + D        ++    + L ++  +++
Sbjct: 120 FDAILREAMPIAITTLRATNRLEAAFEDVARIARDKRLKTEFDMLAKTWRGLRVTPEQAL 179

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
                   ++E+   +      ++   +L+E        +   ++ + K++A ++  + +
Sbjct: 180 MLAASRWEIEEIVQLAKATEEATKYHADLAELWLKYREQIERDEDKRRKLRAKTLAGRRN 239

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
             I   +   +  L Y     YM      P  H+   V    ML    V+  
Sbjct: 240 GLIYAGIVVSMFGLAYPRVQRYM-----TPLAHIGFWVVLLIMLTCTWVIWR 286


>gi|225028137|ref|ZP_03717329.1| hypothetical protein EUBHAL_02409 [Eubacterium hallii DSM 3353]
 gi|224954449|gb|EEG35658.1| hypothetical protein EUBHAL_02409 [Eubacterium hallii DSM 3353]
          Length = 351

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/195 (9%), Positives = 55/195 (28%), Gaps = 18/195 (9%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +K R      +     +     + +GL + + ++++         +E++++ E   +   
Sbjct: 1   MKGRKMLSNSEVAVFCEQSGMILESGLSMLEGISIMEEDVE-LHNTEYKKMYEDMRMC-- 57

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L E+               +   ++   +  GNL   +  L+      +N    ++    
Sbjct: 58  LEETGIFHEALTKTGLFPSYVIQMTKIGEETGNLDVVMKGLAAYYEREENTMQDIKNAIS 117

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG---------------HMLLGVAA 169
                  ++ ++   +   V          L     G                ++  V  
Sbjct: 118 YPLMILCMLLAIMLVMVVKVVPVFNQVYEQLGTQITGPGAVLLKAGEALKQYWIIPTVLL 177

Query: 170 AFMLIGIMVMRLMIN 184
               +G+  +     
Sbjct: 178 CVFAVGVWWLLKTTK 192


>gi|150402959|ref|YP_001330253.1| type II secretion system protein [Methanococcus maripaludis C7]
 gi|150033989|gb|ABR66102.1| type II secretion system protein [Methanococcus maripaludis C7]
          Length = 298

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 79/197 (40%), Gaps = 17/197 (8%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLG 62
           + + +  KF  + P AL ++V S+ +G  V +A+  ++     +      + V+      
Sbjct: 77  MYESKMDKFDQNIPKALYVMVLSLDSGRSVVEAINEVIRSGIPEVDVVFSKVVVLMTERK 136

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           LS  +++  +   +  +       +I    + GG L++ L  L++ L D +N+K+++ ++
Sbjct: 137 LSFEDAMILVSNSLDSKIFRQVGRLIIENRKYGGELADTLKKLAKTLEDLQNLKSQLLSV 196

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR----------------GHMLLG 166
           +    A   II       +  +       ++ L                     G  L G
Sbjct: 197 TANGLAVGLIILCGVIPATAGLIGGYLTVISQLAPSMPSVEASQISKAIETIQIGSGLFG 256

Query: 167 VAAAFMLIGIMVMRLMI 183
           +  A  L G+ + R++I
Sbjct: 257 LFFAVPLFGLKLNRMII 273


>gi|87200664|ref|YP_497921.1| general secretion pathway protein F [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87136345|gb|ABD27087.1| General secretion pathway protein F [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 409

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/160 (10%), Positives = 38/160 (23%), Gaps = 8/160 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                    +   +    P+ + +  I  Q+  P                 +        
Sbjct: 70  KQLALFTRQLSSLMVV-SPLEETLRTIARQTEKPKAQAILT----NVHAGIVEGLPLAEA 124

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G+L      L+ +L  +  ++ K+ A          + 
Sbjct: 125 MRREEPSFPPIYRAMIAAGENSGSLPAIADRLADMLERQAQVRGKIIAALAYPI---VLS 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
                 V+ L+    P  +    N  R   +L      + 
Sbjct: 182 LVAIAVVTGLMISVVPRVVEQFDNASRQLPMLTRVVIGIS 221


>gi|82703025|ref|YP_412591.1| general secretion pathway protein F [Nitrosospira multiformis ATCC
           25196]
 gi|82411090|gb|ABB75199.1| General secretion pathway protein F [Nitrosospira multiformis ATCC
           25196]
          Length = 401

 Score = 47.8 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 6/131 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRM 72
           ++       +   + AGL V  ++A ++  + +P+  E    V      GLSLS ++   
Sbjct: 62  EELNLLTRQMATLLTAGLTVEQSLAALIESAEEPMTREVLGGVKTEVIAGLSLSAALGSY 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R  P      F   +    +  G L   L +L+  L  R+ +K K     +       I
Sbjct: 122 SRSFPD-----FYRALVHGGEESGTLPLVLRHLAEYLDARQTLKQKTSLALLYPALVTII 176

Query: 133 IGSLPFCVSTL 143
              +   +   
Sbjct: 177 AIIIVAGLLMY 187



 Score = 34.7 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 41/130 (31%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   V  G+P+  A++      S   +R      IE    G SLS ++        
Sbjct: 270 FASTLSILVGGGVPLLKALSSGARVMSSMVMRKAIENTIEQVREGASLSRALRE------ 323

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +        +    ++ G L E L   +++       +  V    +E      + G + 
Sbjct: 324 TRVFPPLLVHLVASGEMSGKLKEMLERAAQLEAQALERRLGVFLTLLEPVMILVMGGVVL 383

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 384 MIVLAILLPI 393


>gi|149174858|ref|ZP_01853482.1| MSHA biogenesis protein MshG [Planctomyces maris DSM 8797]
 gi|148846195|gb|EDL60534.1| MSHA biogenesis protein MshG [Planctomyces maris DSM 8797]
          Length = 368

 Score = 47.8 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 6/140 (4%)

Query: 8   RTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           R  K       +  D ++  +RAG+P+   +       +   +    ++      G SL 
Sbjct: 8   RMPKISIASLVDLNDELIAMIRAGIPLDQGLRNAAAHLNRDSKQFIEQLALKIEEGSSLE 67

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E+I      +P          +   +   G L EAL+  +   R R  ++ ++    +  
Sbjct: 68  EAIQLGADKLPP-----SYISLLKSAIRMGKLPEALSAYTSFARSRMELRQEIGMALLYP 122

Query: 127 KASAWIIGSLPFCVSTLVYF 146
                +   L      +++ 
Sbjct: 123 GIVLVMAFFLSLFACFIIFP 142


>gi|170720030|ref|YP_001747718.1| type II secretion system protein [Pseudomonas putida W619]
 gi|169758033|gb|ACA71349.1| type II secretion system protein [Pseudomonas putida W619]
          Length = 295

 Score = 47.8 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 60/147 (40%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +    ++R  +   +    + ++      GL V  A+ V+  +       +  E R+V++
Sbjct: 135 LAVAARRRQQRIALEVSLMIPLLRILFETGLAVEQALRVLSQEGQALLPEISEELRQVLQ 194

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL+L   + +  R + + E      ++      G    ++L  L  +L DR+  + 
Sbjct: 195 RVDSGLALGPELEKSARVLAVDEFIDTCVILQQLLVQGSGAMKSLLALKDLLDDRRLTRM 254

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +   M AK SA ++  L   +  ++
Sbjct: 255 QERVSKMSAKMSAVMMVFLFPALLIVL 281


>gi|326790819|ref|YP_004308640.1| type II secretion system F domain [Clostridium lentocellum DSM
           5427]
 gi|326541583|gb|ADZ83442.1| Type II secretion system F domain [Clostridium lentocellum DSM
           5427]
          Length = 404

 Score = 47.8 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 49/163 (30%), Gaps = 13/163 (7%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                   ++AG+ +   + +   Q S+  ++     +      G +LSE+         
Sbjct: 71  FCKQFASMIQAGISIGKGLNICAQQCSNKTLKKHLEHIHSQVTEGKTLSEATRE------ 124

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  GNL + L        ++  +  KV+           I+  + 
Sbjct: 125 ENIFPDILVSMIECGEASGNLDKVLQQTVDHFDNQLGVTKKVKKALAYPTIVLVIVAVVV 184

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGIM 177
             +   V    P +M +L        +   + +A +   I   
Sbjct: 185 VILMVKVI---PNFMGLLTETGAEIPIPTQIVIAVSNFCIAKW 224



 Score = 42.8 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/137 (11%), Positives = 44/137 (32%), Gaps = 5/137 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   V +G+P+  A+ +      + V  E   +       +SL +  S        
Sbjct: 273 FASTMSMLVESGIPMLQAIEITKKVIGNAVADEELDLA-----IISLKQGQSLYDSLSGS 327

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G L + L  +S   ++  ++      L +E   + ++   +  
Sbjct: 328 IIYPPIMYSMINIGEETGALDDMLIKISVYFKEEVDIAVDNMTLLIEPALTIFMAVIVGG 387

Query: 139 CVSTLVYFTSPGYMNVL 155
            +  ++  T      ++
Sbjct: 388 IMLAVMLPTFAAANAMM 404


>gi|90424502|ref|YP_532872.1| type II secretion system protein [Rhodopseudomonas palustris
           BisB18]
 gi|90106516|gb|ABD88553.1| type II secretion system protein [Rhodopseudomonas palustris
           BisB18]
          Length = 403

 Score = 47.8 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 54/179 (30%), Gaps = 21/179 (11%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   ++AG  ++DA+ ++        +R    ++      G S +E++ R     P
Sbjct: 69  LTRDLALLIKAGARLNDALELLANDMDVGRLRPVVLKIRTAILSGESFAEALERHPAQFP 128

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    ++ G L   L  L       + ++ KV              G + 
Sbjct: 129 -----AMYVALIRVGEMSGTLDRILETLGTERNRAEALRRKVTDALQYPAFVLLAAGGVL 183

Query: 138 FCVSTLVYFTSP--------------GYMNVLINDPRGHML-LGVAAAFMLIGIMVMRL 181
                 V                        L +  RGH + +   AA ++IG  ++  
Sbjct: 184 IFFVCFVLPQFSSVLRDFNAKLDPVMEMFMALSDLLRGHGIEVAATAAGIIIGGWLLWR 242


>gi|238027558|ref|YP_002911789.1| type II secretion system protein [Burkholderia glumae BGR1]
 gi|237876752|gb|ACR29085.1| Type II secretion system protein [Burkholderia glumae BGR1]
          Length = 330

 Score = 47.8 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 57/150 (38%), Gaps = 5/150 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHLGLSLS 66
               D+ P  +D++      GL +  ++ VI          +  E          G +  
Sbjct: 176 ESVADEMPLFVDMLRLLQGVGLSLDQSMQVITHDFTSMLPVLSWELGVAQRQFAAGRTRE 235

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S++R+      +++     ++    + GG + E L      LR+ +    + +   +  
Sbjct: 236 QSLARLTTSFDNEDLRAIVRLLIQVDKHGGAVQEPLRLFGDRLREGRRATLRERIGRLTV 295

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
           K +  +I +L   +  L+    PG M V++
Sbjct: 296 KMTGVMIVTLLPAL--LIVTAGPGIMTVVV 323


>gi|325956434|ref|YP_004291846.1| Competence protein [Lactobacillus acidophilus 30SC]
 gi|325332999|gb|ADZ06907.1| Competence protein [Lactobacillus acidophilus 30SC]
          Length = 333

 Score = 47.8 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 63/179 (35%), Gaps = 14/179 (7%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           K      +     LD +  S+  G  + +++ ++        +    ++      G + S
Sbjct: 9   KDKLNVEEQLA-FLDYLKHSLDNGFSLINSIELM-PALWPKRKELMGKLAMRMKEGANFS 66

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
             + ++         S  +      +   GNL+E L  L+ + R ++    K+++     
Sbjct: 67  SELVKLG-------FSKTTVTQVNLALQQGNLTECLNQLATLNRLKQEQVKKLRSELSYP 119

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              A ++  L   + + +            ++  G +++ V     L+GI  +  ++  
Sbjct: 120 FVLAIMMVVLLVFMQSFISTQFSD-----TSEHSGDLVMLVLIGLALVGIYFLAKIVTL 173


>gi|299066093|emb|CBJ37274.1| Type II secretory pathway [Ralstonia solanacearum CMR15]
          Length = 412

 Score = 47.8 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 55/148 (37%), Gaps = 9/148 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+ V DA+  +   +  +   + +R ++     G +LS ++       P
Sbjct: 79  FARELAALLDAGVSVIDALRTLGSNERREASAAVYRDLLRRLEEGHALSAALELADNVFP 138

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                         S+  G L+ +L   S+     + ++A+V + S+       +  S  
Sbjct: 139 P-----VLVACVKASEQTGGLAASLKRYSQNSATLQALRARVVSASIYPAVLLAVGAS-- 191

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLL 165
                L+ F  P +  +L +  R   +L
Sbjct: 192 -VALFLLAFVVPRFAGLLEHSGRELPML 218


>gi|302383559|ref|YP_003819382.1| type II secretion system F domain protein [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302194187|gb|ADL01759.1| Type II secretion system F domain protein [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 407

 Score = 47.8 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/176 (11%), Positives = 58/176 (32%), Gaps = 12/176 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                     +   + + + + +A+ +   Q+          V+ T      L       
Sbjct: 66  SKTLSAVTRQLSTLIGSDIRIEEALRIAAQQTEGQ----PIGVVLTDVRAAILEGRSFAS 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 +    F        +  G L+  LA+L+  + +++  + KVQ   +     A +
Sbjct: 122 ALARHPKVFPEFYRASIAAGEQSGKLATVLAHLTEFVGNQEKARRKVQLALLYPALLAVV 181

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHM-----LLGVAAAFMLIGIMVMRLMI 183
              +   ++ ++ +  P  + V ++           L+ ++A     G+ V+  + 
Sbjct: 182 SLLM---ITLMMVYVVPDIVKVFVSRGAELPFLTRALIALSAFVQAFGLYVLIALA 234



 Score = 39.7 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 38/131 (29%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMVRYMP 77
               +   VR+ +P+ +A+      + +    E    V      G SL  +++       
Sbjct: 275 FAGSLATLVRSDVPLVEALQASAAVTPNRYARERAFLVAARVREGASLRRAMAEA----- 329

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     I    +  G L   L   ++ L    +   +     +E      + G + 
Sbjct: 330 -DVFPPLLLAIVAAGEQSGKLGHGLERAAQDLEQELDSLVQALVSLVEPGVLLVMGGIVL 388

Query: 138 FCVSTLVYFTS 148
             V  ++    
Sbjct: 389 LMVLAILMPIV 399


>gi|301169007|emb|CBW28604.1| putative type IV pilin secretion protein [Haemophilus influenzae
           10810]
          Length = 405

 Score = 47.8 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 70/174 (40%), Gaps = 9/174 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71
             +    L+ +   +++ +P+ +++ ++    +  + +E+  R++++   GL+ S++I +
Sbjct: 56  NSEISELLNQLATLLQSAIPLKNSLQILQQNCTQIMLNEWLERLLQSIESGLAFSQAIEQ 115

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +Y+  QE       +    ++ G L+     ++        ++ K+Q + +       
Sbjct: 116 QGKYLTQQE-----IQLIQVGEMTGKLAVVCKKIATHRSQSLALQRKLQKIMLYPSMVLG 170

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML---IGIMVMRLM 182
           I   L   +   +        +    +      + ++ +  L   IGI++   +
Sbjct: 171 ISLLLTLALLLFIVPQFAEMYSGNNAELPTITAILLSISNFLKQNIGILLFFAL 224



 Score = 39.3 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/136 (9%), Positives = 44/136 (32%), Gaps = 3/136 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESIS--RM 72
             N    +   ++AG+P++ A+   + ++           +I  + +   L         
Sbjct: 263 LVNFSQSLQIMLQAGIPLNQALDSFLPRTQTWQTKTLVNDIILDKEVRSILQWVSQGYAF 322

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +        +  +    +  G L+  L +++   +++ N +  + +  +E      I
Sbjct: 323 SDSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIADNYQEKLNHQIDLLSQMLEPLMMVII 382

Query: 133 IGSLPFCVSTLVYFTS 148
              +   +  +     
Sbjct: 383 GSLIGIIMMGMYLPIF 398


>gi|319775834|ref|YP_004138322.1| putative type IV pilin secretion protein [Haemophilus influenzae
           F3047]
 gi|319896630|ref|YP_004134823.1| type iv pilin secretion protein [Haemophilus influenzae F3031]
 gi|317432132|emb|CBY80483.1| putative type IV pilin secretion protein [Haemophilus influenzae
           F3031]
 gi|317450425|emb|CBY86641.1| putative type IV pilin secretion protein [Haemophilus influenzae
           F3047]
          Length = 405

 Score = 47.8 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 70/174 (40%), Gaps = 9/174 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71
             +    L+ +   +++ +P+ +++ ++    +  + +E+  R++++   GL+ S++I +
Sbjct: 56  NSEISELLNQLATLLQSAIPLKNSLQILQQNCTQIMLNEWLERLLQSIESGLAFSQAIEQ 115

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +Y+  QE       +    ++ G L+     ++        ++ K+Q + +       
Sbjct: 116 QGKYLTQQE-----IQLIQVGEMTGKLAVVCKKIATHRSQSLALQRKLQKIMLYPSMVLG 170

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML---IGIMVMRLM 182
           I   L   +   +        +    +      + ++ +  L   IGI++   +
Sbjct: 171 ISLLLTLALLLFIVPQFAEMYSGNNAELPTITAILLSISNFLKQNIGILLFFAL 224



 Score = 38.2 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/136 (9%), Positives = 44/136 (32%), Gaps = 3/136 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESIS--RM 72
             N    +   ++AG+P++ A+   + ++           +I  + +   L         
Sbjct: 263 LVNFSHSLQIMLQAGVPLNQALDSFLPRTQTWQTKTLVNDIILDKEVRSILQWVSQGYAF 322

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +        +  +    +  G L+  L +++   +++ N +  + +  +E      I
Sbjct: 323 SDSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIADNYQEKLNHQIDLLSQMLEPLMMVII 382

Query: 133 IGSLPFCVSTLVYFTS 148
              +   +  +     
Sbjct: 383 GSLIGIIMMGMYLPIF 398


>gi|269216231|ref|ZP_06160085.1| putative TadC protein [Slackia exigua ATCC 700122]
 gi|269130490|gb|EEZ61568.1| putative TadC protein [Slackia exigua ATCC 700122]
          Length = 212

 Score = 47.8 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 43/136 (31%), Gaps = 1/136 (0%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESI 69
           +         D +   +RAGL    A A+   +  D +    R        G+ + +E++
Sbjct: 69  RIERHASELFDAVSLGMRAGLSFDAAFALYCTRFDDELAGVCRDAHRAWSTGVLTRAEAL 128

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
           + +        +  F+  +    + G  +   L  LSR        K + +      +  
Sbjct: 129 ASIASKARSPTLERFAANVERNVRFGSPMGRMLDALSRESSGAYRTKIEERVAKAPIEML 188

Query: 130 AWIIGSLPFCVSTLVY 145
                 +   +  ++ 
Sbjct: 189 IPTATLILPAMLIVIL 204


>gi|229494787|ref|ZP_04388543.1| bacterial type II secretion system protein F domain protein
           [Rhodococcus erythropolis SK121]
 gi|229318283|gb|EEN84148.1| bacterial type II secretion system protein F domain protein
           [Rhodococcus erythropolis SK121]
          Length = 262

 Score = 47.8 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 66/164 (40%), Gaps = 1/164 (0%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           L++++  +  G   + A +V   +    V + FR       LG S + +   +      +
Sbjct: 95  LEVLIAELSVGAHPAAASSVAGEECIGEVSAVFRSAGARARLGGS-AAAAFAVPDSCIER 153

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
           E S   +V  V  Q G  L+E L  +   +  R+  + + +A    A+A+A ++  LP  
Sbjct: 154 EFSRIGSVWRVADQHGLALAELLGAVRTDMLGRRRFRQRTEAGLAGARATAAVLAFLPLL 213

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
              L        + VL     G +LL +  A +  G++    + 
Sbjct: 214 GIGLGQLMGASPLRVLFGGGLGGVLLVIGTACVSAGLLWTDRIT 257


>gi|170731900|ref|YP_001763847.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
 gi|169815142|gb|ACA89725.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
          Length = 403

 Score = 47.8 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/138 (10%), Positives = 43/138 (31%), Gaps = 6/138 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   ++AGL ++ ++ ++   ++ D V      +      G   +++++R      
Sbjct: 69  FTRQLASLLQAGLLLAPSLEMLAHTRTRDGVPRIAAGLAREIVGGRRFADALARYPSQFG 128

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G+L   L  ++           K++A      A      ++ 
Sbjct: 129 -----TLYRQLIEVGEASGSLGIVLTRVAEHRERADAQWRKLRAALAYPAAVILFALAIS 183

Query: 138 FCVSTLVYFTSPGYMNVL 155
             +   V  T     +  
Sbjct: 184 AALMVWVVPTFRQIFDGF 201



 Score = 36.6 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 40/130 (30%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+P++DA A +   +           +      G+ L++++        
Sbjct: 273 WCRSLATLLGAGVPLADAFATLERTAGHPVFAHATAHIAARVLRGVRLADAMHSAG---- 328

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                         ++  G L   LA+++ +   + + +    A   E      +   + 
Sbjct: 329 --CFPEDVVQPIAVAEETGALDTMLADIAALCERQLDARLDTLAALGEPLIVIVLGALVG 386

Query: 138 FCVSTLVYFT 147
             V  +    
Sbjct: 387 GLVIAMYLPI 396


>gi|119714631|ref|YP_921596.1| type II secretion system protein [Nocardioides sp. JS614]
 gi|119535292|gb|ABL79909.1| type II secretion system protein [Nocardioides sp. JS614]
          Length = 240

 Score = 47.8 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 51/144 (35%), Gaps = 4/144 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             D P+ +D+   ++R G   +D +A++      P       V     LGL   +  S +
Sbjct: 98  RRDLPHVVDLFAATLRGGAAPADGIALVCTALPGPAADRLAGVAARLALGLDPGQVWSAL 157

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                   +      ++     G  +  A+  L+  L      + + +A ++  KA+  +
Sbjct: 158 ADDPH---LGRLGRTLARAHSSGAPVVAAVERLADDLARSARAETEERARAVGVKAALPL 214

Query: 133 -IGSLPFCVSTLVYFTSPGYMNVL 155
            +  LP  V   +       +  L
Sbjct: 215 GLCLLPAFVLIGIVPLVVALLASL 238


>gi|312879793|ref|ZP_07739593.1| Type II secretion system F domain [Aminomonas paucivorans DSM
           12260]
 gi|310783084|gb|EFQ23482.1| Type II secretion system F domain [Aminomonas paucivorans DSM
           12260]
          Length = 385

 Score = 47.8 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 59/163 (36%), Gaps = 10/163 (6%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIETQHLGLSLSESISRMVRY 75
                +   +++GLP++  + ++   SS    +   +R + E+   G SL+ ++     +
Sbjct: 64  QFCAALAGFLKSGLPLAQVLGLLERTSSKNQRLGDLYRTLRESVESGRSLAVALKESGLF 123

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +   ++    L E L   +R+  D   ++ K+Q+      A   I   
Sbjct: 124 RP------VLLGLVESAEASSKLPEILDRAARLFGDELKLRRKIQSAVTYPLAMLVIGVG 177

Query: 136 LPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGI 176
           +   + T V     G    +         +LLGVA     +  
Sbjct: 178 VVGFLLTYVVPRLTGLFAEIGAALPLPTRVLLGVAGVVKALAW 220



 Score = 37.8 bits (86), Expect = 0.80,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 50/141 (35%), Gaps = 8/141 (5%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  +           +   +++G+P+  A+ +      D  R  +R V E+  +G   S+
Sbjct: 246 RGTRQQLALALVFAHLSTLLKSGIPLVQALELTAPMDRDRNR--WRAVAESVRMGYRFSQ 303

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
            + R                +   ++LGG+L ++L  L     +R     +  A   E  
Sbjct: 304 GLERQG------GFPEDLLAVLRIAELGGDLPDSLERLGATCWERSQASLQRLADLAEPA 357

Query: 128 ASAWIIGSLPFCVSTLVYFTS 148
               + G + F V  ++    
Sbjct: 358 IIVVLGGMVAFVVVAVLLPVF 378


>gi|296268209|ref|YP_003650841.1| type II secretion system protein [Thermobispora bispora DSM 43833]
 gi|296090996|gb|ADG86948.1| type II secretion system protein [Thermobispora bispora DSM 43833]
          Length = 260

 Score = 47.8 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 4/140 (2%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           D P A+D++V  +RAG PV  AV V       P+      V     LG     + + +  
Sbjct: 119 DLPFAIDLLVACLRAGQPVDRAVEVTADAIGGPLAERMSWVAVQLRLGADPGTAWAGLAD 178

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-I 133
             P    + F+  +   ++ G  +++ L  L+   R      +   A  +  +  A + +
Sbjct: 179 EPP---AAPFARTMIRAAKGGAPVADVLVRLADDARQAARAASSAAARKVGVQVVAPLGL 235

Query: 134 GSLPFCVSTLVYFTSPGYMN 153
             LP  V   +     G + 
Sbjct: 236 CFLPAFVLLGIIPMIAGLIA 255


>gi|111225902|ref|YP_716696.1| hypothetical protein FRAAL6567 [Frankia alni ACN14a]
 gi|111153434|emb|CAJ65190.1| hypothetical protein; putative signal peptide [Frankia alni ACN14a]
          Length = 432

 Score = 47.8 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 52/172 (30%), Gaps = 6/172 (3%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-----VIETQHLGLSLSESISRM 72
           + L      + AG P   A+        D   +  +      +           +    +
Sbjct: 62  DFLAAFAAELDAGGPHGHALRAAARGIDDLGAAPGQHPDWIPLDRLADTLAGPEDPAVAL 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R               V + +G  L+ A   L+ + R       ++ A     ++S  +
Sbjct: 122 CRNEAGGV-RQLGIAYQVCTMVGARLAPATTMLATLARADAVRAGELAAALAGPRSSGRL 180

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + +LP     L        ++ L+  P G+  L       L G+  +R   +
Sbjct: 181 VAALPLAGIALGSLAGAQPLHTLLATPAGNACLLAGGLADLAGLRWLRSFAD 232


>gi|189424512|ref|YP_001951689.1| type II secretion system protein [Geobacter lovleyi SZ]
 gi|189420771|gb|ACD95169.1| type II secretion system protein [Geobacter lovleyi SZ]
          Length = 405

 Score = 47.8 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/164 (12%), Positives = 55/164 (33%), Gaps = 11/164 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHLGLSLSESI 69
             +       +V  +++G+P+   +  I+     +         +V E    G +LS ++
Sbjct: 63  NRELLAFNQELVVLLKSGMPIVPVLDAILEHRRKAGGTFAQVLGQVREDVKGGAALSTAL 122

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            R  R  P   ++          +  G + + +      L+  + ++ K+ +  +     
Sbjct: 123 ERHGRLFPPLYLAS-----VRAGERTGEVPQTIRRYILFLKRSEELRKKLISALIYPS-- 175

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             ++      +  L+ +  P + +V  +      LL        
Sbjct: 176 -ILVVVAVLAIMLLLIYVVPTFSHVYADSGSQLPLLTRLLISFT 218



 Score = 39.3 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 11/130 (8%), Positives = 46/130 (35%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+P+ +++ + +G  ++ +  +   +   Q              + MP 
Sbjct: 274 FSRTLATLLGSGIPIVESLRMSLGTLNNRLLEQGMVIAIHQVEEGGRLSVALEQQQLMPP 333

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                 +  +    +  G++ E L++++  L  +   + ++   ++E      +   +  
Sbjct: 334 -----LALRMLGVGEATGSMEEMLSDVAEHLEAQVEERLQLLTTAIEPAVMLIMGLVIGI 388

Query: 139 CVSTLVYFTS 148
            +  +     
Sbjct: 389 IIVAMYLPIF 398


>gi|77458199|ref|YP_347704.1| type II secretion system protein [Pseudomonas fluorescens Pf0-1]
 gi|77382202|gb|ABA73715.1| putative general secretion pathway protein F [Pseudomonas
           fluorescens Pf0-1]
          Length = 395

 Score = 47.8 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 57/160 (35%), Gaps = 6/160 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +       +   + AGLP+ DA+  +   +++   R     ++   + G S S+++ ++ 
Sbjct: 58  NLVLFSQELTTLLNAGLPLIDALESLAEKETAPAARKTLSELVRLLYEGKSFSQALGQLS 117

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
              P          +   S+  G + +AL       +    ++ K+ + S+       + 
Sbjct: 118 AVFPP-----LYVALVQSSEKTGAVGDALGRYVSYRQRMDEVRQKIVSASIYPLLLLVVG 172

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           G +   +   V          L ++      + +++   L
Sbjct: 173 GGVVLFLMGYVVPRFSLVFEGLGSNLPWLSQILMSSGMFL 212


>gi|327183251|gb|AEA31698.1| Competence protein [Lactobacillus amylovorus GRL 1118]
          Length = 333

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 62/173 (35%), Gaps = 14/173 (8%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            +     LD +  S+  G  +  ++ ++        +    ++      G + S  + ++
Sbjct: 15  EEQLA-FLDYLKHSLDNGFSLISSIELM-PALWPKRKELMGKLAMRMKEGANFSSELVKL 72

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    S  +      +   GNL+E L  L+ + R ++    K+++        A +
Sbjct: 73  G-------FSKTTVTQVNLALQQGNLTECLNQLATLNRLKQEQVKKLRSELSYPFVLAIM 125

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           +  L   + + +            ++  G +++ V    +L+GI  +  ++  
Sbjct: 126 MVVLLVFMQSFISTQFSD-----TSEHSGDLVMLVLIGLVLVGIYFLAKIVTL 173


>gi|126466360|ref|YP_001041469.1| type II secretion system protein [Staphylothermus marinus F1]
 gi|126015183|gb|ABN70561.1| type II secretion system protein [Staphylothermus marinus F1]
          Length = 591

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 66/177 (37%), Gaps = 6/177 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE---FRRVIETQHLGLS 64
           R      +FP     +   V +GL    A   I   S    +S     R ++  + LG  
Sbjct: 97  RAGGIEGEFPYTTAYLSMMVMSGLSPYVAFERITHASKVFTKSAELSQRFILLVRVLGRD 156

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
              + S +    P               + GG++++ L   +R+L     +K K+ A  +
Sbjct: 157 PLTAFSMLAHRTPSPTARDLLMGYVTTVRAGGDVADYLNKKARLLFSELLVKMKIIADRL 216

Query: 125 EAKASAWIIGSLPFCV-STLVYFTSPGYMN--VLINDPRGHMLLGVAAAFMLIGIMV 178
                A++   L   +  T++YF +  +++       P G  L+      M+ G+++
Sbjct: 217 AGLLEAYLALVLLSMISLTVMYFVTVSFISAVPFGLSPIGLFLVLYVLIPMISGMII 273



 Score = 42.0 bits (97), Expect = 0.040,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 50/140 (35%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  K +      L  +V   + GL    ++  +  ++        +++     LG+SLS 
Sbjct: 374 REYKVVTGITRFLRDLVEIRKTGLSPERSIIELSRRNYGVFTKYLKKMALQLSLGISLSR 433

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
            I  + + + +        V++   ++GG   E + +L+        ++ + +       
Sbjct: 434 IIQELFKKIIVWRAKVLLFVLTDTIEVGGGSVEIMEHLAWFAESVDAIEDEKKKNLRTLL 493

Query: 128 ASAWIIGSLPFCVSTLVYFT 147
              ++ G L      ++   
Sbjct: 494 IVPYMGGILTAATVIMLAAF 513


>gi|71082767|ref|YP_265486.1| type II secretion system PilC [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91762811|ref|ZP_01264776.1| Type II Secretion System PilC [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|71061880|gb|AAZ20883.1| Type II Secretion System PilC [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91718613|gb|EAS85263.1| Type II Secretion System PilC [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 410

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 56/170 (32%), Gaps = 7/170 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65
           K+  K  +            V+AGLP+   + ++  Q     ++     + ++   G++L
Sbjct: 63  KKKVKVEEIL-IFSKQFATMVKAGLPILQVLIMLRDQLESPALKDIIEDIRKSLEGGVNL 121

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S+   +  +             +    +  G L   L  +   L  ++ +K K++   M 
Sbjct: 122 SKCFEKYPQ-----YFDNIYVNLIKAGEASGKLDVFLLKIVDSLEKKEKIKKKIKGALMY 176

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
                 +  ++   +   V        + +  +        +A +  L G
Sbjct: 177 PAIMFTVAITVSAFMLIKVVPVFAKMYDGMGLELPAATATIMAMSDFLSG 226


>gi|293606486|ref|ZP_06688844.1| type II secretion system protein [Achromobacter piechaudii ATCC
           43553]
 gi|292815109|gb|EFF74232.1| type II secretion system protein [Achromobacter piechaudii ATCC
           43553]
          Length = 330

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 68/158 (43%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +   + +R     D+ P  +D++      GL +  ++ V++ + +     +  E R   E
Sbjct: 166 VSRRLARRKRMAGDELPLLIDLLRLLQGVGLSIDQSMQVLIKEFAQVLPVLSYELRLASE 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S++R+       ++S    +I+   Q GG + E L      LRD++ ++ 
Sbjct: 226 GYVRGRTREQSLARLATGFDNDDLSAICRLIAQVDQHGGAVQEPLNRFGERLRDKRRLEL 285

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           K +      K +  +I +L   +  L+     G++ VL
Sbjct: 286 KEKVAKTTVKMTGVMIVTLLPAL--LIVTGGAGFIAVL 321


>gi|307720189|ref|YP_003891329.1| Type II secretion system F domain-containing protein [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978282|gb|ADN08317.1| Type II secretion system F domain protein [Sulfurimonas
           autotrophica DSM 16294]
          Length = 399

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 65/171 (38%), Gaps = 6/171 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISR 71
            DDF   ++ +    ++G+P+  AV V+   +     +   + ++E    G  LS ++ +
Sbjct: 56  QDDFLAFIEELYYLTKSGMPIDKAVKVLSQTTKKAAYKRILKTILEELKAGEQLSTALKK 115

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                    +   +      ++  G+++  L  L   L  +K +++ V+           
Sbjct: 116 -ALKNENITIDSLAISFISTAEEVGSVTTGLYQLFEYLTFQKKIRSDVKQALAYPFFLIG 174

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           +   + F +  L+    P +  +   D     L G++ A +  G  +   M
Sbjct: 175 MSIVVSFLIFFLII---PRFSTIFSADEFAQ-LPGISYAVLSTGKFLNAHM 221


>gi|297567921|ref|YP_003686891.1| Type II secretion system F domain protein [Meiothermus silvanus DSM
           9946]
 gi|296852370|gb|ADH65383.1| Type II secretion system F domain protein [Meiothermus silvanus DSM
           9946]
          Length = 400

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/136 (10%), Positives = 43/136 (31%), Gaps = 3/136 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                 A+  +   +  G+P+ +A+  +   + + V     +V       + L       
Sbjct: 259 DRAISKAMRTLAMLLEGGIPILEALETVSKSTGNAVYD---QVFSAIKEEIGLRAKNVSE 315

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    +  +       +   +L E +  ++       +++A++    +E  +   +
Sbjct: 316 AFRTQEAYFTAAAMQQLRVGEQSSHLPEMMNYIAEDHEKESSLRARMLPKVIEPISIILL 375

Query: 133 IGSLPFCVSTLVYFTS 148
            G +   V+ L     
Sbjct: 376 GGMVGLIVAGLFLPLF 391


>gi|167837985|ref|ZP_02464844.1| type IV pilus biogenesis protein PilC [Burkholderia thailandensis
           MSMB43]
          Length = 389

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 44/156 (28%), Gaps = 6/156 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AGL ++ ++ ++   +    +      +      G   S ++ R  R   
Sbjct: 55  FARQLAGLLHAGLALAPSLELLAQATRRSEMPRIAAGLAREIVAGQQFSAALRRYPRQ-- 112

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                 F   +    +  G L+  LA L+          A+V+       A      ++ 
Sbjct: 113 ---FDSFFCQLVAVGETAGALAAVLARLADDRERAAAQYARVRGALAYPVAVLLFALAIT 169

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             +   V  T                   +A +  +
Sbjct: 170 AALLIWVVPTFEQIFAGFGATLPAPTRFILALSASV 205


>gi|168185181|ref|ZP_02619845.1| putative general secretion pathway protein F [Clostridium botulinum
           Bf]
 gi|182671776|gb|EDT83737.1| putative general secretion pathway protein F [Clostridium botulinum
           Bf]
          Length = 334

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 60/182 (32%), Gaps = 8/182 (4%)

Query: 2   KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           K++ K R+ K    D     + +   + +G+ ++DA+ +      +         I    
Sbjct: 45  KNVFKIRSEKITLKDCSILCNKLYMLMASGINITDAINIAYEDFHNVHVKNSLYTIRNNI 104

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           L      +  +            F   +    +  G +   L++L +   ++     +++
Sbjct: 105 LRGDSIYNSFK----GFSNIYPKFLLSMIYIGEESGRIQYVLSDLKKFYENKYKFNKEIK 160

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA---FMLIGIM 177
              +           + + +  +V  +  G  N L        L  + A     +++GI+
Sbjct: 161 NALIYPIIVLISFIIMLYILIHMVVPSFIGIFNELGGSIPKKTLGMITAIKVFNVILGIL 220

Query: 178 VM 179
            +
Sbjct: 221 FI 222


>gi|255594312|ref|XP_002536066.1| conserved hypothetical protein [Ricinus communis]
 gi|223521010|gb|EEF26318.1| conserved hypothetical protein [Ricinus communis]
          Length = 238

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 48/135 (35%), Gaps = 7/135 (5%)

Query: 8   RTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSL 65
           R  +            + + ++AG+P+  A+A +  Q+         R V      G  L
Sbjct: 30  RQPRVNTQTLILFCVQMEQLLQAGVPLLQALADLDEQNEHQGMKAALRNVQRDLEAGKLL 89

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S+++    +  P          +    +  G L E   +L+R L  +  ++++V+     
Sbjct: 90  SQALQAQPKIFPP-----LLGQLIDAGERTGQLPEIFGHLTRTLSWQAELRSQVRRGLTY 144

Query: 126 AKASAWIIGSLPFCV 140
                 ++    + +
Sbjct: 145 PAVLCVMVAIAAYVM 159


>gi|319937914|ref|ZP_08012314.1| hypothetical protein HMPREF9488_03150 [Coprobacillus sp. 29_1]
 gi|319806820|gb|EFW03459.1| hypothetical protein HMPREF9488_03150 [Coprobacillus sp. 29_1]
          Length = 291

 Score = 47.4 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 63/147 (42%), Gaps = 2/147 (1%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQH 60
           +++I  + ++F    P  ++ ++ S++ G+ + +A    +      + + E+ +++    
Sbjct: 136 QNIISTKNSQFDKSLPMFINQVILSIKCGVSLENAFGFALRGMDKTLVQREYAKMVAELK 195

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           +    + +    + R +  +E   F  +I    + G  +S+ L +    + D + +  K 
Sbjct: 196 IYSDDIPKVFMNLNRRVHTEECERFCNIIVSGLKNGNKMSDILKSEYERISDNQIVALKK 255

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146
           +A S +   +A  I  +   V  L+  
Sbjct: 256 KADSKKNLGTAINILLIFVPVILLLII 282


>gi|254521552|ref|ZP_05133607.1| type II secretion system protein [Stenotrophomonas sp. SKA14]
 gi|219719143|gb|EED37668.1| type II secretion system protein [Stenotrophomonas sp. SKA14]
          Length = 311

 Score = 47.4 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 57/147 (38%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           +   +K+R     ++ P  +D++      G  +  ++  +      +   +  E +    
Sbjct: 147 LSAWVKRRRRAVENELPLLIDLLRLLQGVGFSMDQSLQTLGDKLRDALPILGGELQEANV 206

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G + ++S+ R+       ++S    +I      GG + E L   S  LR+++    
Sbjct: 207 AYTHGRTRAQSLRRLSDVYGDDDLSSLVQLILQVHAHGGAVQEPLRQFSIRLREQRRNSL 266

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           K +   +  K +  ++ +L   +  ++
Sbjct: 267 KEKVGKLSVKMTVVMMLTLLPALMLVL 293


>gi|148825424|ref|YP_001290177.1| putative type IV pilin secretion protein [Haemophilus influenzae
           PittEE]
 gi|229846386|ref|ZP_04466494.1| putative type IV pilin secretion protein [Haemophilus influenzae
           7P49H1]
 gi|148715584|gb|ABQ97794.1| putative type IV pilin secretion protein [Haemophilus influenzae
           PittEE]
 gi|229810479|gb|EEP46197.1| putative type IV pilin secretion protein [Haemophilus influenzae
           7P49H1]
          Length = 405

 Score = 47.4 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 70/174 (40%), Gaps = 9/174 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71
             +    L+ +   +++ +P+ +++ ++    +  + +E+  R++++   GL+ S++I +
Sbjct: 56  NSEISELLNQLATLLQSAIPLKNSLQILQQNCTQIMLNEWLERLLQSIESGLAFSQAIEQ 115

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +Y+  QE       +    ++ G L+     ++        ++ K+Q + +       
Sbjct: 116 QGKYLTQQE-----IQLIQVGEMTGKLAVVCKKIATHRSQSLALQRKLQKIMLYPSMVLG 170

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML---IGIMVMRLM 182
           I   L   +   +        +    +      + ++ +  L   IGI++   +
Sbjct: 171 ISLLLTLALLLFIVPQFAEMYSGNNAELPTITAILLSISNFLKQNIGILLFFAL 224



 Score = 38.6 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/136 (9%), Positives = 44/136 (32%), Gaps = 3/136 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESIS--RM 72
             N    +   ++AG+P++ A+   + ++           +I  + +   L         
Sbjct: 263 LVNFSQSLQIMLQAGVPLNQALDSFLPRTQTWQTKTLVNDIILDKEVRSILQWVSQGYAF 322

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +        +  +    +  G L+  L +++   +++ N +  + +  +E      I
Sbjct: 323 SNSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIADNYQEKLNHQIDLLSQMLEPLMMVII 382

Query: 133 IGSLPFCVSTLVYFTS 148
              +   +  +     
Sbjct: 383 GSLIGIIMMGMYLPIF 398


>gi|237795338|ref|YP_002862890.1| general secretion pathway protein [Clostridium botulinum Ba4 str.
           657]
 gi|229264143|gb|ACQ55176.1| general secretion pathway protein [Clostridium botulinum Ba4 str.
           657]
          Length = 334

 Score = 47.4 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 60/182 (32%), Gaps = 8/182 (4%)

Query: 2   KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           K++ K R+ K    D     + +   + +G+ ++DA+ +      +         I    
Sbjct: 45  KNVFKIRSEKITLKDCSILCNKLYMLMASGINITDAINIAYEDFHNVHVKNSLYTIRNNI 104

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           L      +  +            F   +    +  G +   L++L +   ++     +++
Sbjct: 105 LRGDSIYNSFK----GFSNIYPKFLLSMIYIGEESGRIQYVLSDLKKFYENKYKFNKEIK 160

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA---FMLIGIM 177
              +           + + +  +V  +  G  N L        L  + A     +++GI+
Sbjct: 161 NALIYPIIVLISFIIMLYILIHMVIPSFIGIFNELGGSIPKKTLGMITAIKVFNVILGIL 220

Query: 178 VM 179
            +
Sbjct: 221 FI 222


>gi|227505650|ref|ZP_03935699.1| type II secretion system protein [Corynebacterium striatum ATCC
           6940]
 gi|227197803|gb|EEI77851.1| type II secretion system protein [Corynebacterium striatum ATCC
           6940]
          Length = 257

 Score = 47.4 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 53/187 (28%), Gaps = 8/187 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +    + R  +  +     L  +   +RAG   + A+   V               +   
Sbjct: 72  VNQARQARRGR--EHLATFLGTVAADLRAGATTAGALQRGVNSVPAECPAAVRLPLQTAA 129

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +            V     VI + +  G  L+  +      L   +    
Sbjct: 130 GMAAHGGHIHAPLVEAAD---PAVVRLGHVIRMSTAHGVALANLIEQAQAQLDAARRHAK 186

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
             ++     +A+A I+  LP     +        ++ L+    G +LL V  A    G  
Sbjct: 187 STESSLQGPQATALILACLPLAGIAMGGAMGADSLSFLLGGGLGGLLLDVGVALACAGFA 246

Query: 178 VMRLMIN 184
             R ++ 
Sbjct: 247 WSRYILR 253


>gi|84495076|ref|ZP_00994195.1| hypothetical protein JNB_09759 [Janibacter sp. HTCC2649]
 gi|84384569|gb|EAQ00449.1| hypothetical protein JNB_09759 [Janibacter sp. HTCC2649]
          Length = 204

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/126 (11%), Positives = 35/126 (27%), Gaps = 5/126 (3%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
            +AL +   ++R+GL   +A+  +       V  + R V      G   + S + +    
Sbjct: 66  ADALVLCALALRSGLGPIEALEAVADHVGGAVARQLRVVASAHRWGQDAATSWAHVGEAW 125

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
                   +       Q G   +  +   +  +R  +  + +             +    
Sbjct: 126 -----RPAALAWQAAEQSGAAPAGVVLAAAERMRREEASRVEAAVQRAGVLLVLPLGACF 180

Query: 137 PFCVST 142
                 
Sbjct: 181 LPGFVG 186


>gi|242281057|ref|YP_002993186.1| type II secretion system protein [Desulfovibrio salexigens DSM
           2638]
 gi|242123951|gb|ACS81647.1| type II secretion system protein [Desulfovibrio salexigens DSM
           2638]
          Length = 403

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/155 (10%), Positives = 50/155 (32%), Gaps = 5/155 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
              +   +   +++G  ++ ++ ++   S       +  + +    G S S  + +  + 
Sbjct: 70  LGESFYYLGILIQSGTALAQSLDMMARMSGGKASHTWMEIRDAVQSGESFSSCLGKYPKI 129

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P          +   ++  G L + L N+++   +R  +  ++    +       I   
Sbjct: 130 FPQ-----VYVGMVQVAESVGKLGDVLENIAKYEEERAEVSGRLMTAMVYPVVILLIGMG 184

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             + + + V     G       +      + VA  
Sbjct: 185 AVYFLLSEVLPKITGIFKAAKGELPTSTKIVVALG 219


>gi|296394990|ref|YP_003659874.1| transmembrane protein [Segniliparus rotundus DSM 44985]
 gi|296182137|gb|ADG99043.1| putative transmembrane protein [Segniliparus rotundus DSM 44985]
          Length = 285

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 60/185 (32%), Gaps = 15/185 (8%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-------DPVRSEFRRVIETQHLGLSL 65
                 AL  +V  +R G   + A A    + +         V    R V     LG  +
Sbjct: 97  EAAVQAALMAVVDELRVGAHPAHAFASAAQEGALAATCGGREVARTMREVAARARLGGDV 156

Query: 66  SE-------SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            +       +       +        ++   +  Q G  +++ L ++      R     +
Sbjct: 157 GQGLRRRAAAARSAGLGLGGAFWERLASCWELSHQEGVPIAQVLGSVRADAVQRVRFAER 216

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             A    A+A+A I+  LP     L        + VL +D  G  LL +   F+  G+  
Sbjct: 217 ADAALAGARATAKILSGLPLLCVVLGQSLGAQPLRVLFSDS-GSFLLMIGCGFLCAGLAW 275

Query: 179 MRLMI 183
            R + 
Sbjct: 276 SRRIT 280


>gi|238760526|ref|ZP_04621660.1| Type II secretion system protein [Yersinia aldovae ATCC 35236]
 gi|238701242|gb|EEP93825.1| Type II secretion system protein [Yersinia aldovae ATCC 35236]
          Length = 303

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 55/165 (33%), Gaps = 8/165 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
           +        +   ++AGLP+ +++ ++  +    P R     + +    G  LSE+++  
Sbjct: 48  ERLITVTRQLATLLQAGLPLVNSLQLLAKEMDALPWRCLLHEISQLVAQGKPLSEAMAHY 107

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +  P          +    +L GNL +    L +    ++ ++ KV            I
Sbjct: 108 PQTFP-----RLYPPVIAMGELTGNLEQCCTQLVQYQEQQQKLQKKVIKALKYPVFVCII 162

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHM--LLGVAAAFMLIG 175
              +   +  +V                     LL ++A   L G
Sbjct: 163 ALVVAVVMLVMVLPEFAQIYQSFDTPLPALTAGLLFISAFITLYG 207


>gi|187779487|ref|ZP_02995960.1| hypothetical protein CLOSPO_03083 [Clostridium sporogenes ATCC
           15579]
 gi|187773112|gb|EDU36914.1| hypothetical protein CLOSPO_03083 [Clostridium sporogenes ATCC
           15579]
          Length = 402

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 60/182 (32%), Gaps = 8/182 (4%)

Query: 2   KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           K++ K R+ K    D     + +   + +G+ ++DA+ ++    ++         I+   
Sbjct: 51  KNIFKIRSEKITLKDCSILCNKLYMLMASGINITDAINIVYEDFNNTPVKNSLYTIKNNI 110

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           L      +  R            F   +    +  G +    ++L     ++     +++
Sbjct: 111 LRGDSIYNSFRA----FSNIYPKFLLSMIYIGEESGRIQYVFSDLKNFYENKYKFNKEIK 166

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA---FMLIGIM 177
              +           + + +  +V  +  G  N L        L  + A      ++GI+
Sbjct: 167 NALIYPIIVLIAFIIMLYILIHMVVPSFIGIFNELGGSIPKKTLGMITAIKVFNAILGIL 226

Query: 178 VM 179
            +
Sbjct: 227 FI 228



 Score = 38.2 bits (87), Expect = 0.51,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 47/130 (36%), Gaps = 5/130 (3%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           N  + +   +++G+P++ ++ ++   + + +  E  +     +L  ++ +  S       
Sbjct: 271 NFSNSMNLMIKSGIPINKSLNLLEEITDNYIFKENIK-----NLNKNIKDGKSISFSLNK 325

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               +     +    +  G L E+  ++  IL+     K KV    +E     ++   + 
Sbjct: 326 CDFSNKILLSMVRVGEESGKLEESFYSVYNILKKDLEEKLKVSVKLIEPTIIIFMSLIIC 385

Query: 138 FCVSTLVYFT 147
                +    
Sbjct: 386 IIFLYVFIPM 395


>gi|307354354|ref|YP_003895405.1| type II secretion system F domain-containing protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307157587|gb|ADN36967.1| Type II secretion system F domain protein [Methanoplanus
           petrolearius DSM 11571]
          Length = 615

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 53/152 (34%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           +  +         P  L  I      G+ +  A+ +I    +  + SE R V +    G 
Sbjct: 406 IRSRYVRNVEKQLPELLREISDMRDIGMTLQSAITMISSSKNSVLSSEIRIVSDEMKYGS 465

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           SLS ++ RM   + L  V    +++   S++   + E LA     L     MK+K   +S
Sbjct: 466 SLSGALVRMEERVGLVSVKRAISLLVKASEVTDAIREILAIAISDLEHYLRMKSKRLNVS 525

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
               A  ++   +    +  +           
Sbjct: 526 FVYLAVIYLSFGIYLYSAYQMNVAFISSFTDF 557



 Score = 40.9 bits (94), Expect = 0.085,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 51/143 (35%), Gaps = 4/143 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQHLGL-S 64
           R  +   D P A+  + +++ + + + D    +         V  E   ++    L    
Sbjct: 114 RKNRIDMDLPYAITYM-QALSSTIVLYDIFRSVYEAEDLYGEVSRECGIIVRDVELFGED 172

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L  +++ +V   P +        + +  + GGNL+      S   R+    + +     +
Sbjct: 173 LLSAMNYVVTITPSERFKELIGDLILVYRSGGNLTNFFNAKSESYREIARQELEALLQFL 232

Query: 125 EAKASAWIIGSLPFCVSTLVYFT 147
           E  A  ++   +   ++ ++   
Sbjct: 233 EMIAEIYVTAFVAGPIAIIIMLV 255


>gi|254252517|ref|ZP_04945835.1| Type II secretion system protein [Burkholderia dolosa AUO158]
 gi|124895126|gb|EAY69006.1| Type II secretion system protein [Burkholderia dolosa AUO158]
          Length = 303

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 34/83 (40%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R  K +   P+ LD IVR V  G  V  A    +  + +P+RS    V     
Sbjct: 115 LASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQSALLTTEEPLRSCLDDVSRMLR 174

Query: 61  LGLSLSESISRMVRYMPLQEVSF 83
            G+ +  ++  + +     E   
Sbjct: 175 GGVEIDRAMMHVAKVYRTDESRT 197


>gi|83719565|ref|YP_441683.1| type IV pilus biogenesis protein PilC [Burkholderia thailandensis
           E264]
 gi|83653390|gb|ABC37453.1| type IV pilus biogenesis protein PilC [Burkholderia thailandensis
           E264]
          Length = 405

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 45/153 (29%), Gaps = 6/153 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AGL ++ ++ ++   +  + +      +      G   S ++ R  R   
Sbjct: 71  FARQLAGLLHAGLALAPSLELLAQATRRNEMPRIAAGLAREIVAGRQFSAALRRYPRQFD 130

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                 F   +    +  G L+  LA L+          A+V+       A   +  ++ 
Sbjct: 131 P-----FFCQLVAVGETAGALAAVLARLADDRERAAAQYARVRGALAYPVAVLLVALAIT 185

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             +   V  T                   +A +
Sbjct: 186 AALLIWVVPTFEQIFAGFGAALPAPTRFVLALS 218


>gi|170695306|ref|ZP_02886452.1| type II secretion system protein [Burkholderia graminis C4D1M]
 gi|170139706|gb|EDT07888.1| type II secretion system protein [Burkholderia graminis C4D1M]
          Length = 409

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 48/169 (28%), Gaps = 2/169 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R      +       +   +RAGLP++ A+ ++    +       R V          + 
Sbjct: 62  RPKANAAEVTLFTRQLSSLLRAGLPLAPALDLLAQPQNSRRAGMPRIVGALARDIT--AG 119

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
                  +    + +     +    +  G L   LA ++         +AKV+A      
Sbjct: 120 LRFSAALHGHPAQFNALYCQLVQVGEAAGALPAVLARIADDRERAAAQRAKVRAALTYPV 179

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
           A   +  ++   +   V  T     +             +A +  +   
Sbjct: 180 AILLLAVAITAALLVWVVPTFKQIFDGFGARLPAPTQFVLALSSGVATW 228


>gi|290890797|ref|ZP_06553864.1| hypothetical protein AWRIB429_1254 [Oenococcus oeni AWRIB429]
 gi|290479569|gb|EFD88226.1| hypothetical protein AWRIB429_1254 [Oenococcus oeni AWRIB429]
          Length = 392

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/184 (9%), Positives = 54/184 (29%), Gaps = 23/184 (12%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
                  L ++ + +++G  ++ A   +  I  +SS                 L+L  + 
Sbjct: 3   RRQQVEFLSLLGQLIQSGYSINQATNFIQQISRESS-------------WVKNLNLELAK 49

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            +   +     ++         +   GNL + L  L+         + K++ +       
Sbjct: 50  GKNFAFAIKPYLNNSLNFQIGMADRYGNLEKILLQLADFSEKCLKQENKIKQILRYPLVL 109

Query: 130 AWIIGSLPFCVSTLVYFTSPGY-----MNVLINDPRGHMLLGVAAAFMLIGIMV--MRLM 182
            +++  +   V   +      +     ++ +       +L  V    + +       + M
Sbjct: 110 VFLLIGIAVAVKIFLLPILSSWSNQQRVDFVDEYFWFKVLGVVLMTLLFLFYRWQSFKKM 169

Query: 183 INFD 186
               
Sbjct: 170 SKLK 173


>gi|251790889|ref|YP_003005610.1| type II secretion system protein [Dickeya zeae Ech1591]
 gi|247539510|gb|ACT08131.1| type II secretion system protein [Dickeya zeae Ech1591]
          Length = 401

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 44/127 (34%), Gaps = 6/127 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65
           +       +       +   + AG+P+ +A+  + GQ+    V      V E    G+S 
Sbjct: 56  RYERLSTLELALLTRQLASLLDAGIPLEEALTTLAGQADKPAVGVVLNAVREQLIAGVSF 115

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           ++++  +         +     +    +  G L+  L  L+  L  R+  K  +    + 
Sbjct: 116 AQALQTLP-----HSFNRLYCAMVAAGEATGGLALVLIRLADYLDQRQKTKNALIQALLY 170

Query: 126 AKASAWI 132
               A +
Sbjct: 171 PALLAVM 177


>gi|145634703|ref|ZP_01790412.1| putative type IV pilin secretion protein [Haemophilus influenzae
           PittAA]
 gi|145268248|gb|EDK08243.1| putative type IV pilin secretion protein [Haemophilus influenzae
           PittAA]
          Length = 406

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 70/174 (40%), Gaps = 9/174 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71
             +    L+ +   +++ +P+ +++ ++    +  + +E+  R++++   GL+ S++I +
Sbjct: 56  NSEISELLNQLATLLQSVIPLKNSLQILQQDCTQIMLNEWLERLLQSIESGLAFSQAIEQ 115

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +Y+  QE       +    ++ G L+     ++        ++ K+Q + +       
Sbjct: 116 QGKYLTQQE-----IQLIQVGEMTGKLAVVCKKIATHRSQSLALQRKLQKIMLYPSMVLG 170

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML---IGIMVMRLM 182
           I   L   +   +        +    +      + ++ +  L   IGI++   +
Sbjct: 171 ISLLLTLALLLFIVPQFAEMYSGNNAELPTITAILLSISNFLKQNIGILLFFAL 224



 Score = 38.6 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/137 (8%), Positives = 43/137 (31%), Gaps = 4/137 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS--EFRRVIETQHLGLSLSESIS--R 71
             N    +   ++AG+P++ A+   + ++            ++  + +   L        
Sbjct: 263 LVNFSHSLQIMLQAGVPLNQALDSFLPRTQTWQTKKTLVNDIVLDKEVRSILQWVSQGYA 322

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
               +           +    +  G L+  L +++   +++ N +  + +  +E      
Sbjct: 323 FSDSVSSDLFPMEVQQMLQIGEQSGKLALMLEHIADNYQEKLNHQIDLLSQMLEPLMMVI 382

Query: 132 IIGSLPFCVSTLVYFTS 148
           I   +   +  +     
Sbjct: 383 IGSLIGIIMMGMYLPIF 399


>gi|327400834|ref|YP_004341673.1| Type II secretion system F domain-containing protein [Archaeoglobus
           veneficus SNP6]
 gi|327316342|gb|AEA46958.1| Type II secretion system F domain protein [Archaeoglobus veneficus
           SNP6]
          Length = 635

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/157 (6%), Positives = 51/157 (32%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L ++   +     P     +     AGL + +A+ V+       +  E   +      G 
Sbjct: 421 LRERTVRQIEKRIPEIFKELAILNEAGLSIIEALKVLSTIELGVISKEINIIRRRIEWGE 480

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +++++  +   +  + ++    +     +      +A   ++        ++ ++++  
Sbjct: 481 PVTKALRLLELRVRSEIIAKVIPISVKALETSPTYKDAFQTVAAFASAEVGLRERIRSSM 540

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
           +      ++   +   +  ++          ++ +  
Sbjct: 541 LLYIIIIYLSIFVFLLIIYILINNILSAFGGVVTEGV 577



 Score = 37.0 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 67/181 (37%), Gaps = 4/181 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIE-T 58
             +  +R  +     P+A++++      G+   D +  +         +  EF  +I+ T
Sbjct: 133 SFISSRRRNEIDIYLPHAVNMMYGMAAGGIGTYDMIKSVAEAKFMFGELSKEFGTIIQLT 192

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
                 L  ++  +    P +++S F   +    + GGNLS  L N S    + + +   
Sbjct: 193 DVFKEDLLSAMRHVRDTTPSEKLSSFLDDLIFIIKGGGNLSAFLKNKSDEFFEEQEVSFT 252

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM-NVLINDPRGHMLLGVAAAFMLIGIM 177
                +      ++   L F +  L+       +   ++N  R  +L+ +  A +    +
Sbjct: 253 SYLDFLSVMTETYLAVFLLFPLFLLIVLVVMQIVGEDMLNTYRTGILILLPVATVFFTYL 312

Query: 178 V 178
           +
Sbjct: 313 I 313


>gi|294101766|ref|YP_003553624.1| Type II secretion system F domain protein [Aminobacterium
           colombiense DSM 12261]
 gi|293616746|gb|ADE56900.1| Type II secretion system F domain protein [Aminobacterium
           colombiense DSM 12261]
          Length = 396

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 63/182 (34%), Gaps = 9/182 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           M+     R    L++       +   +  G  +SD++ ++  +     +RS  +++ +  
Sbjct: 50  MRFFPSGRKNLSLEELCLFFTHLSAMISMGGTLSDSLYIMESELPQATLRSILQKIQDEL 109

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G S SES+          +       +    +  G L + L  LS     R+  + K+
Sbjct: 110 RGGKSFSESLGLSG------DWPPGVLAMVSAGEESGELLKMLRYLSSYFMQRRVFRKKL 163

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA--AFMLIGIM 177
               +     A +   +   +   V+      +  L         L ++    F+ +GI 
Sbjct: 164 IGALVYPAFVAIVSVVVLNILFFKVFPQIEAVLADLGIALPASTRLFLSFSKFFLTVGIG 223

Query: 178 VM 179
           ++
Sbjct: 224 II 225


>gi|296165927|ref|ZP_06848400.1| bacterial type II secretion system protein F domain protein
           [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898719|gb|EFG78252.1| bacterial type II secretion system protein F domain protein
           [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 130

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 40/105 (38%)

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +    + S  G  ++  +    R + +R+   A+V +    A+A+A I+ +LP  
Sbjct: 22  HWDRLALCWQLASDHGLAVATLMRAAQRDIAERQRFSARVASNMAGARATAAILAALPVL 81

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
              L        +  L++   G  LL   +    +G+     + +
Sbjct: 82  GLVLGQLIGARPLGFLLDGHAGGWLLVTGSTLACVGLWWADRITD 126


>gi|171463464|ref|YP_001797577.1| type II secretion system protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193002|gb|ACB43963.1| type II secretion system protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 140

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 41/113 (36%), Gaps = 6/113 (5%)

Query: 26  SVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMPLQEVSFF 84
            +R+GL +  ++ ++  Q  +P   E   ++      G SLS+S ++          +  
Sbjct: 1   MLRSGLSILPSLEMVRDQVENPTLKETVNQIYIDVESGSSLSQSFTKHPDI-----FNAI 55

Query: 85  STVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
              +    +  G L   L  L   +R    ++  +Q+  +       +   + 
Sbjct: 56  YINMVKAGESSGRLDIFLDKLVLSIRKTIKIRKSIQSAMLYPAILLIVATVVV 108


>gi|159905296|ref|YP_001548958.1| type II secretion system protein [Methanococcus maripaludis C6]
 gi|159886789|gb|ABX01726.1| type II secretion system protein [Methanococcus maripaludis C6]
          Length = 298

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 81/197 (41%), Gaps = 17/197 (8%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLG 62
           + + +  KF  + P AL ++V S+ +G  V +A+  ++      V + F + V+      
Sbjct: 77  MYESKMDKFDKNIPKALYVMVLSLDSGRSVVEAINEVIRSGILEVDAVFSKVVVLMTERK 136

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           LS  +++  +   +  +       +I    + GG L++ L  L++ L D +N+K+++ ++
Sbjct: 137 LSFEDAMILVSNSLDSKIFRQVGRLIIENRKYGGELADTLKKLAKTLEDLQNLKSQLMSV 196

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR----------------GHMLLG 166
           +    A   II       +  +       ++ L                     G  + G
Sbjct: 197 TANGLAVGLIILCGVIPATAGLIGGYLTVISQLAPSMPSVEASQISKAIETIQIGAGMFG 256

Query: 167 VAAAFMLIGIMVMRLMI 183
           +  A  L G+ + R++I
Sbjct: 257 LLFAVPLFGLKINRMII 273


>gi|88601624|ref|YP_501802.1| type II secretion system protein [Methanospirillum hungatei JF-1]
 gi|88187086|gb|ABD40083.1| type II secretion system protein [Methanospirillum hungatei JF-1]
          Length = 625

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 72/180 (40%), Gaps = 7/180 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQHLGL-S 64
           R +    D P A+  + +++   + + + +  I         V  EF  ++    +    
Sbjct: 101 RKSSIDLDLPYAITYM-QALSTTMTLYNVIRKIYEADDLFGEVGKEFGLIVRDVEVFGDD 159

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L  +I  + +  P + +  F   + + S  GG+++  L++ S   R+    + +    ++
Sbjct: 160 LYTAIRNLQKVTPSKNLEEFLNDLLLLSNSGGDVTNFLSSRSAYFRESAARELESILKTI 219

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-HMLLGVAAAFMLIGIMVMRLMI 183
           E  A  ++   +   ++ ++   +        +D  G   L+ +  A   IG++ +  ++
Sbjct: 220 EVMAEVYVTAFVAGPITMIIIIVAQNLGGK--SDLAGYMPLIIIGLALGSIGMIYILYLM 277



 Score = 40.9 bits (94), Expect = 0.083,   Method: Composition-based stats.
 Identities = 16/139 (11%), Positives = 44/139 (31%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
           P  L  +V     G+ +  A+++I       +  E     E    G +   ++ RM   +
Sbjct: 406 PEFLRQLVDMKDVGVTLQTAISLISNSKLGVLSQELVMTSEDIRRGATTINALVRMEDRI 465

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
            L  V    +++   S++   + + L            +K     +++      ++   +
Sbjct: 466 GLVSVKRAISLLVKASEVTDYIKDVLIIAINDFEHYLKLKKDRFNIAITYVMIVYLAVGI 525

Query: 137 PFCVSTLVYFTSPGYMNVL 155
               +  +  +        
Sbjct: 526 YMYTAYSLNVSFVSSFTNF 544


>gi|270263974|ref|ZP_06192242.1| type IV pilin biogenesis protein [Serratia odorifera 4Rx13]
 gi|270042167|gb|EFA15263.1| type IV pilin biogenesis protein [Serratia odorifera 4Rx13]
          Length = 399

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 55/169 (32%), Gaps = 8/169 (4%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYM 76
                +   ++AGLP+ + + ++  +          R + E    G   S+ I+      
Sbjct: 63  QFTRQLATLLQAGLPLVNGLQLLAEEHPSAAWRCLLREITEQVRQGQPFSDVIAGQRAIF 122

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
           PL         +    +L GNL      L++    ++ ++ KV            +   +
Sbjct: 123 PL-----IYRQLIAIGELTGNLDACCLQLAQQQEAQQKLQKKVIKALRYPLFICAVALLV 177

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183
              +  +V     G               LL ++A  +  G  ++ +M 
Sbjct: 178 SILMLVMVLPEFAGVYQSFDAPLPWFTQGLLNLSAILVHSGPWLVLIMA 226


>gi|170759525|ref|YP_001787248.1| general secretion pathway protein [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169406514|gb|ACA54925.1| general secretion pathway protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 334

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/170 (11%), Positives = 52/170 (30%), Gaps = 5/170 (2%)

Query: 2   KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           K++ K R+ K    D     + +   + +G+ ++DA+ +      +         I    
Sbjct: 45  KNVFKIRSEKITLKDCSILCNKLYMLMASGINITDAINIAYEDFHNVHVKNSLYTIRNNI 104

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           L      +  +            F   +    +  G +   L++L     ++     +++
Sbjct: 105 LRGDSIYNSFK----GFSNIYPKFLLSMIYIGEESGRIQYVLSDLKNFYENKYKFNKEIK 160

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
              +           + + +  +V  +  G  N L        L  + A 
Sbjct: 161 NALIYPIMVLITFIIMLYILIHMVVPSLIGIFNELGGSIPKKTLGMITAI 210


>gi|167580492|ref|ZP_02373366.1| type IV pilus biogenesis protein PilC [Burkholderia thailandensis
           TXDOH]
          Length = 405

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 45/153 (29%), Gaps = 6/153 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AGL ++ ++ ++   +  + +      +      G   S ++ R  R   
Sbjct: 71  FARQLAGLLHAGLALAPSLELLAQATRRNEMPRIAAGLAREIVAGRQFSAALRRYPRQFD 130

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                 F   +    +  G L+  LA L+          A+V+       A   +  ++ 
Sbjct: 131 P-----FFCQLVAVGETAGALAAVLARLADDRERAAAQYARVRGALAYPVAVLLVALAIT 185

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             +   V  T                   +A +
Sbjct: 186 AALLIWVVPTFEQIFAGFGAALPAPTRFVLALS 218


>gi|163846483|ref|YP_001634527.1| hypothetical protein Caur_0905 [Chloroflexus aurantiacus J-10-fl]
 gi|222524263|ref|YP_002568734.1| hypothetical protein Chy400_0986 [Chloroflexus sp. Y-400-fl]
 gi|163667772|gb|ABY34138.1| conserved hypothetical protein [Chloroflexus aurantiacus J-10-fl]
 gi|222448142|gb|ACM52408.1| conserved hypothetical protein [Chloroflexus sp. Y-400-fl]
          Length = 308

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/191 (11%), Positives = 64/191 (33%), Gaps = 11/191 (5%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLG--- 62
           +       +   A+  +   +  GL +  A+  ++      P+R E+R ++  Q      
Sbjct: 117 RYNRHLERELTPAIGRLSALLSGGLGLRTALERVLTDMGDGPLRDEWRWLLRQQGTPLAD 176

Query: 63  ---LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
               +L + I+ +         +     ++V +    +L       +         + + 
Sbjct: 177 GSIATLRQVIAALAAQTSASRHATLLNHLAVAADQPQDLQARRCAAAYAALQVSERRREE 236

Query: 120 Q-ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH---MLLGVAAAFMLIG 175
                 + + S   +G     ++  +  T    + +  + P G    +++ +A    +IG
Sbjct: 237 ALTELAQMRYSGLAVGGAGCLMALYLIATQWERVRIAYSTPLGMVFAVIVTLALLAPMIG 296

Query: 176 IMVMRLMINFD 186
             +   + + D
Sbjct: 297 GFLFSQVEDVD 307


>gi|295107881|emb|CBL21834.1| Bacterial type II secretion system protein F domain. [Ruminococcus
           obeum A2-162]
          Length = 341

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 51/155 (32%), Gaps = 8/155 (5%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-------SSDPVRSEFRRVIETQ 59
           KR  + L D+P+ +      ++AG+        +          +          +    
Sbjct: 187 KRAEQLLMDYPSLIMKFTLLIQAGMTARKVFQKMSADYMRNRSKTGRYAYEAITIMCHEM 246

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAK 118
             G++  E+  R        +   FST++     +    +++ L   +    D +  KA+
Sbjct: 247 DSGVAEMEAYRRFGERCGQMKYKTFSTILIQNLQKGSHRMADLLEKEALEAWDERKRKAR 306

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153
           V   +   K    +I  L   ++ ++      +  
Sbjct: 307 VLGETAATKLLVPMIMMLAVVMAIIMIPAFLSFYG 341


>gi|167949750|ref|ZP_02536824.1| putative type II secretion system protein [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 267

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 52/149 (34%), Gaps = 9/149 (6%)

Query: 26  SVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFF 84
            + +G+P S+A+      + +P +      +      G S+SE++    +       S  
Sbjct: 1   MLGSGIPASEALQEAAQGTENPTLALAMEDIRFYVEAGSSISEAVGLYPKI-----FSNT 55

Query: 85  STVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144
              +    +  G +  AL   +  L+  + +K+  +   +      +I+ ++   V    
Sbjct: 56  VLYLLRIGEETGRIDRALEVAATHLQRIEQIKSDTKQAMLYPS---FILVTMGAAVIFWF 112

Query: 145 YFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           Y+  P  + +          L  A   + 
Sbjct: 113 YYVVPQIVTLFTEMEVELPPLTKALIAIS 141


>gi|17547028|ref|NP_520430.1| GSPF-related transmembrane protein [Ralstonia solanacearum GMI1000]
 gi|17429329|emb|CAD16016.1| probable type II secretory pathway, gspf-related transmembrane
           protein [Ralstonia solanacearum GMI1000]
          Length = 400

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 57/148 (38%), Gaps = 9/148 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+ V DA+  +   +  +   + +R ++     G +LS ++       P
Sbjct: 67  FARELAALLDAGVSVIDALRTLGSNERREASAAVYRDLLRRLEEGHALSAALELADNVFP 126

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                         S+  G L+ +L   S+     + ++A+V + S+       + GS+ 
Sbjct: 127 P-----VLVACVKASEQTGGLAASLKRYSQNSATLQALRARVVSASIYPAVLLAVGGSVA 181

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLL 165
                L+ F  P +  +L +  R   +L
Sbjct: 182 V---FLLAFVVPRFAGLLEHSGRELPML 206


>gi|146298377|ref|YP_001192968.1| type II secretion system protein [Flavobacterium johnsoniae UW101]
 gi|146152795|gb|ABQ03649.1| GspF-like type II secretion system protein [Flavobacterium
           johnsoniae UW101]
          Length = 375

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/177 (11%), Positives = 57/177 (32%), Gaps = 16/177 (9%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   +++G+    A+ ++  QS+  +  E   ++E +   +S       M      
Sbjct: 41  FYRELGMLLKSGVDFKKALEILSNQSAHKLEKE--IILEIKEKVISGRSIYESMKETNQF 98

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
               ++S       +    L E L  L +    +  MK ++ ++         +   + +
Sbjct: 99  SAYEYYS---IQIGEETRKLEEVLGELQKYFNRKIQMKRQIVSVLTYPAIVMIVTVLVLY 155

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGV-----------AAAFMLIGIMVMRLMIN 184
            +   V            ++      + +               ++IG+++M  M+ 
Sbjct: 156 FMLNKVVPMFSSVFKQFGSELPKSTQVIIKISNHSGTIFSIVFAVIIGLVIMHTMLK 212


>gi|217977096|ref|YP_002361243.1| type II secretion system protein [Methylocella silvestris BL2]
 gi|217502472|gb|ACK49881.1| type II secretion system protein [Methylocella silvestris BL2]
          Length = 404

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 50/143 (34%), Gaps = 9/143 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
           ++       +   +R G  +++A+ ++   S    +R    ++      G S ++S++  
Sbjct: 65  EEVTFFTGDLALLLRTGARINEALELVATDSDVGRLRPTIAKLTAAILGGESFADSLAHH 124

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P          +    +  GNL   L  ++      + ++ KV           ++
Sbjct: 125 PALFPP-----MYVALVRVGETSGNLVPVLEAIAAERTRAEALRRKVGDALRYPA---FV 176

Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155
           + +    +   + F  P +  VL
Sbjct: 177 LSAAGAVLIFFLTFVLPQFGAVL 199


>gi|51891534|ref|YP_074225.1| hypothetical protein STH396 [Symbiobacterium thermophilum IAM
           14863]
 gi|51855223|dbj|BAD39381.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 273

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 49/147 (33%), Gaps = 3/147 (2%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
              D P  L  +     +G+ +  A+      ++ P+  E R  +    +G     ++  
Sbjct: 126 VQRDLPYFLFTLAVLAESGMQLLPALDHYARNAAAPLGREVRSALAEIRMGQPPGMALLE 185

Query: 72  MVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           M + + +++++     +     +    L+ AL   +    DR+   A+        K   
Sbjct: 186 MAQRLDVRDLTRAVGALVQTMEKGTEGLAAALRAQAAEAWDRRRRLAQEAGAQASVKLLV 245

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLIN 157
            ++  +   V  +     P     L  
Sbjct: 246 PLVLFVLPAVLAM--AAGPAIYAFLTQ 270


>gi|16272252|ref|NP_438464.1| putative type IV pilin secretion protein [Haemophilus influenzae Rd
           KW20]
 gi|260581234|ref|ZP_05849053.1| general secretion pathway protein F [Haemophilus influenzae RdAW]
 gi|1170331|sp|P44621|HOFC_HAEIN RecName: Full=Protein transport protein hofC homolog
 gi|1573265|gb|AAC21961.1| protein transport protein [Haemophilus influenzae Rd KW20]
 gi|260092159|gb|EEW76103.1| general secretion pathway protein F [Haemophilus influenzae RdAW]
          Length = 406

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 64/162 (39%), Gaps = 6/162 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71
             +    L+ +   +++ +P+ +++ ++    +  V +E+  R++++   GL+ S++I +
Sbjct: 56  NSEISELLNQLATLLQSAIPLKNSLQILQQNCTQIVLNEWLERLLQSIESGLAFSQAIEQ 115

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +Y+  QE       +    ++ G L+     ++        ++ K+Q + +       
Sbjct: 116 QGKYLTQQE-----IQLIQVGEMTGKLAVVCKKIATHRSQSLALQRKLQKIMLYPSMVLG 170

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           I   L   +   +        +    +      + ++ +  L
Sbjct: 171 ISLLLTLALLLFIVPQFAEMYSGNNAELPTITAILLSISNFL 212



 Score = 39.3 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/137 (8%), Positives = 44/137 (32%), Gaps = 4/137 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS--EFRRVIETQHLGLSLSESIS--R 71
             N    +   ++AG+P++ A+   + ++            ++  + +   L        
Sbjct: 263 LVNFSQSLQIMLQAGVPLNQALDSFLPRTQTWQTKKTLVNDIVLDKEVRSILQWVSQGYA 322

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
               +        +  +    +  G L+  L +++   +++ N +  + +  +E      
Sbjct: 323 FSNSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIAENYQEKLNHQIDLLSQMLEPLMMVI 382

Query: 132 IIGSLPFCVSTLVYFTS 148
           I   +   +  +     
Sbjct: 383 IGSLIGIIMMGMYLPIF 399


>gi|146338382|ref|YP_001203430.1| putative general secretion pathway protein F [Bradyrhizobium sp.
           ORS278]
 gi|146191188|emb|CAL75193.1| putative general secretion pathway protein F [Bradyrhizobium sp.
           ORS278]
          Length = 389

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 43/138 (31%), Gaps = 6/138 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   ++AG  + DA+ ++ G +    +R+   R+  +   G S +++++      P
Sbjct: 55  FTRDLALLLKAGARLEDALELLAGDADIGRLRAIVSRLRSSILAGESFADALAHHPTQFP 114

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G+L   L  L       + M+ K+                + 
Sbjct: 115 P-----MYLALVRVGEASGSLDHVLDVLGAERARAEAMRRKLGDALQYPLFVLVAAFLVM 169

Query: 138 FCVSTLVYFTSPGYMNVL 155
                +V       +   
Sbjct: 170 LFFFIVVLPQFSTVLRDF 187


>gi|296118088|ref|ZP_06836670.1| membrane protein [Corynebacterium ammoniagenes DSM 20306]
 gi|295968974|gb|EFG82217.1| membrane protein [Corynebacterium ammoniagenes DSM 20306]
          Length = 264

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 57/185 (30%), Gaps = 2/185 (1%)

Query: 1   MKHLIKKRTA-KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           +  +  KR   +  D     L  +   +RAG     A+     + +              
Sbjct: 75  LTQMHDKRVNLRAEDAIAQLLGTMTADLRAGATFPAALKRGADELAVSATVSMDIKAAIA 134

Query: 60  HLGLSL-SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              +          V      +++    + S+  + G  LS         +  RK  +A 
Sbjct: 135 TAAVIAHRGGSISTVLSTSHPQLTNLGALCSLNEKHGIPLSNVFEQAHNQIESRKRHRAA 194

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            +A     +A+A ++  LP     +           L     G +LL V  A    G + 
Sbjct: 195 TKASLQGPQATAIVLTLLPLAGIFMGTIMGANPAGFLFGGGLGGLLLVVGVALACAGFIW 254

Query: 179 MRLMI 183
            R++I
Sbjct: 255 SRMLI 259


>gi|238783682|ref|ZP_04627702.1| General secretion pathway protein [Yersinia bercovieri ATCC 43970]
 gi|238715395|gb|EEQ07387.1| General secretion pathway protein [Yersinia bercovieri ATCC 43970]
          Length = 389

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 62/190 (32%), Gaps = 24/190 (12%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
             D       +   V + +P+ + + +I  QS    V +    V +    G SLS+S+S 
Sbjct: 49  SADLVLLTRQMSILVSSDIPLDETLKIIEKQSKKRYVSTVIHDVRKKVVEGYSLSDSLSY 108

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             R       +     +    +L G+L   L+ L+  +   + ++ K+    +      +
Sbjct: 109 FPR-----VFNVLYRSMIAAGELSGHLGLVLSQLAEHIEQTQRLQRKIVQALIYPAILIF 163

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG--------------VAAAFMLIGIM 177
           I       +  L+    P  +     D +   L                +    + + + 
Sbjct: 164 ISAG---VIIILLSVVIPNIIESFSFDNQELPLSTRAIMNISYYLKNNMLLIVIIAVALW 220

Query: 178 V-MRLMINFD 186
           + +R  +   
Sbjct: 221 IGLRRALKIK 230


>gi|170739450|ref|YP_001768105.1| type II secretion system protein [Methylobacterium sp. 4-46]
 gi|168193724|gb|ACA15671.1| type II secretion system protein [Methylobacterium sp. 4-46]
          Length = 404

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 5/128 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L      + AGL V  A+ ++  QS   +R     V++    G SLS +++   +  P 
Sbjct: 71  FLKEFGTLLGAGLTVDRALRLVERQSPGALRPVLADVLQRVLAGASLSRAMAAHPQAFP- 129

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                         +  G L E +A L+  L  R  ++  + +  +       +      
Sbjct: 130 ----REMVDGLRAGEATGTLGEVVATLTASLERRDAVRRHLASAMIYPALLILMGLGTLG 185

Query: 139 CVSTLVYF 146
            V  ++  
Sbjct: 186 MVIGVLVP 193


>gi|295106650|emb|CBL04193.1| Type II secretory pathway, component PulF [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 350

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 48/159 (30%), Gaps = 8/159 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
             + +   + AG+   +AV+++         +     V      G  L++++        
Sbjct: 14  FCESVAIMLAAGIQTDEAVSLLGENMEDGAFKRACDAVYLRLIAGEPLAKALD------G 67

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    ++ G L   L  L+    +   + AK+++  +   A   ++  + 
Sbjct: 68  SGFFPRHVVDMVGAGEVSGRLEPTLRTLAVYYDEEGRLFAKMRSSIVYPAALLCVMSVIL 127

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
                ++          L  +           A + IG 
Sbjct: 128 AFTVAVILPVFVDVYESLSGNLAAGS-FNAVGASIGIGW 165


>gi|260582604|ref|ZP_05850394.1| general secretion pathway protein F [Haemophilus influenzae NT127]
 gi|260094415|gb|EEW78313.1| general secretion pathway protein F [Haemophilus influenzae NT127]
          Length = 406

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 64/162 (39%), Gaps = 6/162 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71
             +    L+ +   +++ +P+ +++ ++    +  V +E+  R++++   GL+ S++I +
Sbjct: 56  NSEISELLNQLATLLQSAIPLKNSLQILQQNCTQIVLNEWLERLLQSIEAGLAFSQAIEQ 115

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +Y+  QE       +    ++ G L+     ++        ++ K+Q + +       
Sbjct: 116 QGKYLTQQE-----IQLIQVGEMTGKLAVVCKKIATHRSQSLALQRKLQKIMLYPSMVLG 170

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           I   L   +   +        +    +      + ++ +  L
Sbjct: 171 ISLLLTLALLLFIVPQFAEMYSGNNAELPTITAILLSISNFL 212



 Score = 38.6 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 13/137 (9%), Positives = 44/137 (32%), Gaps = 4/137 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS--EFRRVIETQHLGLSLSESIS--R 71
             N    +   ++AG+P++ A+   + ++            +I  + +   L        
Sbjct: 263 LVNFSQSLQIMLQAGVPLNQALDSFLPRTQTWQTKKTLVNDIILDKEVRSILQWVSQGYA 322

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
               +        +  +    +  G L+  L +++   +++ N +  + +  +E      
Sbjct: 323 FSNSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIAENYQEKLNHQIDLLSQMLEPLMMVI 382

Query: 132 IIGSLPFCVSTLVYFTS 148
           I   +   +  +     
Sbjct: 383 IGSLIGIIMMGMYLPIF 399


>gi|171060549|ref|YP_001792898.1| type II secretion system protein [Leptothrix cholodnii SP-6]
 gi|170777994|gb|ACB36133.1| type II secretion system protein [Leptothrix cholodnii SP-6]
          Length = 397

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/154 (11%), Positives = 45/154 (29%), Gaps = 4/154 (2%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           D       +V  + AGL + +AV ++  + +    +    V+      L   +  S    
Sbjct: 60  DLELFSQELVSLLGAGLSLVEAVDLLAEKETGRSAAA---VLTELRTDLHRGQRFSD-AL 115

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                            S+  G++ EA++      +    ++ +V + S+       +  
Sbjct: 116 EHHPAVFPPMFVATVRASERTGDIQEAVSRFLAYHQQLDRIRRRVVSASVYPLMLMGVGL 175

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168
            +   +   V          +         L + 
Sbjct: 176 LVTAFMLLFVVPKFSRIYEEIGGQLPFLTRLLIG 209


>gi|149177813|ref|ZP_01856412.1| general secretion pathway protein F-putative pilus protein
           [Planctomyces maris DSM 8797]
 gi|148843303|gb|EDL57667.1| general secretion pathway protein F-putative pilus protein
           [Planctomyces maris DSM 8797]
          Length = 345

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/166 (9%), Positives = 54/166 (32%), Gaps = 11/166 (6%)

Query: 25  RSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSF 83
             + +G+ +  +  +   +     ++     ++     G  ++ ++ +   Y P      
Sbjct: 20  TMLESGVSIVKSFQLAGKKLGDHRLQQSVNDIVMELKSGNDVTSALQKQGNYYP-----E 74

Query: 84  FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143
               +   ++  G L E L  L+    +   M+     +         +   +   +  +
Sbjct: 75  LMVNMISVAEQSGGLPEVLKALAEHYDNLVQMRKNFLRMIAWPVFQFVVALLVIALMILI 134

Query: 144 VYFTSP-----GYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +   +        + + ++ P G M+        L  + V+  +++
Sbjct: 135 LGLIAQGGAAIDVLGLGLSGPSGAMIWLTCTFGSLFALYVLYQILD 180


>gi|145636569|ref|ZP_01792237.1| protein transport protein [Haemophilus influenzae PittHH]
 gi|145270394|gb|EDK10329.1| protein transport protein [Haemophilus influenzae PittHH]
          Length = 406

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/162 (12%), Positives = 64/162 (39%), Gaps = 6/162 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71
             +    L+ +   +++ +P+ +++ ++    +  V +E+  R++++   GL+ S++I +
Sbjct: 56  NSEISELLNQLATLLQSAIPLKNSLQILQQNCTQIVLNEWLERLLQSIESGLAFSQAIEQ 115

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +Y+  QE       +    ++ G L+     ++        ++ K+Q + +       
Sbjct: 116 QGKYLTQQE-----IQLIQVGEMTGKLAVVCKKIATHRSQSLALQRKLQKIMLYPSMVLG 170

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           I   L   +   +        N    +      + ++ +  L
Sbjct: 171 ISLLLTLTLLLFIVPQFAEMYNGNNAELPTITAILLSISNFL 212



 Score = 39.3 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/137 (9%), Positives = 44/137 (32%), Gaps = 4/137 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS--EFRRVIETQHLGLSLSESIS--R 71
             N    +   ++AG+P++ A+   + ++            +I  + +   L        
Sbjct: 263 LVNFSQSLQIMLQAGVPLNQALDSFLPRTQTWQTKKTLVNDIILDKEVRSILQWVSQGYA 322

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
               +        +  +    +  G L+  L +++   +++ N +  + +  +E      
Sbjct: 323 FSNSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIADNYQEKLNHQIDLLSQMLEPLMMVI 382

Query: 132 IIGSLPFCVSTLVYFTS 148
           I   +   +  +     
Sbjct: 383 IGSLIGIIMMGMYLPIF 399


>gi|84496011|ref|ZP_00994865.1| putative integral membrane protein [Janibacter sp. HTCC2649]
 gi|84382779|gb|EAP98660.1| putative integral membrane protein [Janibacter sp. HTCC2649]
          Length = 302

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 51/160 (31%), Gaps = 4/160 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   K+  A+F       +D++      G     A+          V       +    
Sbjct: 146 VRDDAKRARAEFSRSLGAYIDLVALERNNGAGPRQAMEAAAAGGDSWVFRRLSEELARTR 205

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
               +  E++  +   + L E+   + ++ +  + G  +   L   S  +R       K 
Sbjct: 206 WSGLTPWEALRALGDELGLPELDDLADIMRLSGEEGAQVYAQLRARSAGMRTAMLNTEKA 265

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159
           +A  +  + S  +       V  L    +P  + V+   P
Sbjct: 266 KANEIGERMSIPMS---LLGVIFLAILVAPALLRVMGGAP 302


>gi|325295626|ref|YP_004282140.1| type II secretion system F domain [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325066074|gb|ADY74081.1| Type II secretion system F domain [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 408

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 48/150 (32%), Gaps = 7/150 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSL 65
           +R      +  +      R++  G+ V + +  I   S +   R     + E    G SL
Sbjct: 60  QRRKISKQELADFCFYFGRALDMGISVLEILEDIGKSSKNKYFRKVMETLRERVTAGSSL 119

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           SE++     + P          +    +    L +   N +  L    +++ +V+     
Sbjct: 120 SEAMELTGAFPP------ELIGLVKVGESTDALPKVFLNYAEYLDWVISIEKEVKQALSY 173

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
               ++I+      +   +       +  +
Sbjct: 174 PIFVSFIMVFTIAIMFGYIIPQIIPAITAM 203



 Score = 37.4 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 47/130 (36%), Gaps = 8/130 (6%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPV--RSEFRRVIETQHLGLSLSESISRMVRYMP 77
           +  +    R+G  +  A+ +I+      +  +S F++V E   +G  LS ++ R      
Sbjct: 277 MRALAEVYRSGGTILRALDIIINHVEQNLYIKSIFQKVKENIMVGDMLSVAMERSG---- 332

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G L ++L  L+ I  D    K +   + +E      + G L 
Sbjct: 333 --FFQSTIIRMIKLGEETGALDKSLLRLAEIYEDDMRRKIQTMTVVIEPTLQLVLGGILG 390

Query: 138 FCVSTLVYFT 147
                ++   
Sbjct: 391 IVALGILLPV 400


>gi|119719362|ref|YP_919857.1| type II secretion system protein [Thermofilum pendens Hrk 5]
 gi|119524482|gb|ABL77854.1| type II secretion system protein [Thermofilum pendens Hrk 5]
          Length = 604

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/168 (11%), Positives = 51/168 (30%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
                   L  +V   + G+     +  +  +         R + +    G+SL     R
Sbjct: 393 IQYGLTRFLRDLVEVRKTGMAPEKCIINLKDRDYGKFTPYLRDIAKQVGWGVSLHTIFER 452

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             + M          ++    ++GG   + L  L+      + ++ + +A         +
Sbjct: 453 FSKGMKNWFALISMFLLVESIEVGGGTPQTLEALASYAETLEQVEKEKRAALRPLMLMPY 512

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   V  ++       +           L+G+    ++I   +M
Sbjct: 513 VGALIITVVVLILVEFMGSMLKFAGTAISTEQLVGMFLPPVIINSYMM 560


>gi|218663023|ref|ZP_03518953.1| putative tadC pilus assembly protein [Rhizobium etli IE4771]
          Length = 145

 Score = 46.7 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 62/144 (43%), Gaps = 4/144 (2%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSDPVRS---EFRRVIETQHLGLSLSESISRMVRYMPL 78
           +++  + AG+ +  A   +  +  D  +        ++     G  L E+++ +   + +
Sbjct: 1   MLIVCLDAGMSIEAAANRVAREFVDKQQDFGLHLSIMMLEVRGGRRLREALANLATRLRI 60

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL-P 137
            E    + +     +LG ++++ L   S+ +RD + ++A+ +A ++  K    +   L P
Sbjct: 61  DEARALAVLFRQSEELGTSVTQTLRVYSKEMRDLRIVRAEEKANALPVKMLLPLGAFLFP 120

Query: 138 FCVSTLVYFTSPGYMNVLINDPRG 161
             +  ++       +++LI    G
Sbjct: 121 VSLIIVLVPIVIRVVSLLIGLKPG 144


>gi|312898845|ref|ZP_07758233.1| type II secretion system F domain protein [Megasphaera
           micronuciformis F0359]
 gi|310620007|gb|EFQ03579.1| type II secretion system F domain protein [Megasphaera
           micronuciformis F0359]
          Length = 397

 Score = 46.7 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/159 (8%), Positives = 50/159 (31%), Gaps = 13/159 (8%)

Query: 26  SVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
            ++AG+P+++A  +I  +  +  + +            ++                   +
Sbjct: 71  LLKAGIPLTEAWHLISRRLKNRRKRQAVE-----GCITAMESGKRAAESMQDSGAFPQTA 125

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
             +    +  G++ +    L+       + +++++ + +      ++   +       + 
Sbjct: 126 CSLVQAGEHSGHMEDMTELLASYYERLCDERSQLRNMMIYPT---FLFVCINILFFGALV 182

Query: 146 FTSPGYMNVLINDPR-----GHMLLGVAAAFMLIGIMVM 179
           F  P + ++             MLL         G  ++
Sbjct: 183 FVIPVFSDLFAETGVPLPQSTRMLLAAGNFLYRYGPFLI 221


>gi|295094185|emb|CBK83276.1| Bacterial type II secretion system protein F domain. [Coprococcus
           sp. ART55/1]
          Length = 443

 Score = 46.7 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 60/164 (36%), Gaps = 12/164 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP----------VRS 50
           ++ + KKR+ + + ++P  +D +   + AG+ V  A A IV    +           +  
Sbjct: 282 IQGMEKKRSDELMSEYPELVDKLTLYLGAGVTVRGAFARIVKSGREDCAGTDQGGSVLTR 341

Query: 51  EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
           E    +     G+S SE+   M   + L       +++S          + L  ++   +
Sbjct: 342 ELIYTLNEIQAGVSESEAYYNMGHRINLPMYIKLMSLLSQNV--KKGTRDILIMMAGEEQ 399

Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +    + ++     E   +  ++  +      +V    P  +N 
Sbjct: 400 NAMQTRKEMAKRKGEEAGTKLLLPMVVLLGVVMVIVMLPAIINF 443


>gi|325983461|ref|YP_004295863.1| Type II secretion system F domain [Nitrosomonas sp. AL212]
 gi|325532980|gb|ADZ27701.1| Type II secretion system F domain [Nitrosomonas sp. AL212]
          Length = 394

 Score = 46.7 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 54/153 (35%), Gaps = 6/153 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
             +    ++    AGL + +++  ++  +     R   + +++  + G++ S+++    +
Sbjct: 58  LVHFSQELLSLQTAGLSLVESIETLLEKEQDASNRKIIQNILDRLYEGITFSQALEDYPQ 117

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
             P              S+  G+L+EAL            ++ K+   S+       +  
Sbjct: 118 AFPP-----LYIATVRASERTGDLAEALTRFITYQTQMDFVRKKLVGASIYPVLLLVVGL 172

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
            +   +   V        + + +D     LL +
Sbjct: 173 LVSIFLMVFVVPKFSAIYDDMGSDLPWLSLLLI 205


>gi|237653196|ref|YP_002889510.1| general secretion pathway protein F [Thauera sp. MZ1T]
 gi|237624443|gb|ACR01133.1| general secretion pathway protein F [Thauera sp. MZ1T]
          Length = 410

 Score = 46.7 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 51/171 (29%), Gaps = 6/171 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLG 62
            ++ R    +++           + AGL V  A++ ++ Q+  + V      +      G
Sbjct: 61  RVQARRRLPVNELALLSRQWATLLAAGLTVEHALSALIEQAESERVHDTLAAIRSDVVSG 120

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            SL  ++ R     P               +  G L+  +  L+  L    +++ K    
Sbjct: 121 HSLRIALDRHSGAFPP-----IYRAAIAAGEQSGELAAVMNQLADHLERGADLQRKTMQA 175

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
            +     A +   +   +   V     G              + +  +  +
Sbjct: 176 LIYPALVAMVALLVVTGLMVFVVPQVVGVFAQSKQALPLLTRIMIGVSNFI 226


>gi|327490355|gb|EGF22141.1| bacterial type II secretion system protein F [Streptococcus
           sanguinis SK1058]
          Length = 408

 Score = 46.7 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/162 (10%), Positives = 45/162 (27%), Gaps = 7/162 (4%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
               L D       +   + +G+P+++AV ++  Q++        +++       S    
Sbjct: 57  KKIKLKDISLFCKQMSVMLESGIPLNNAVDILEQQATSKNLKSSLKIVSKSLKEGS---- 112

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                              +    +  G L E L  +S           +++   +    
Sbjct: 113 QLSKAMLDQEGMFPDLLIRMVQAGEKTGKLDEVLEKMSEHYNKELKTSRQIRGAMIYPAV 172

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
            A++  +    +  +V    P +  +         L      
Sbjct: 173 LAFLAVAAVLALLYVVI---PSFSGIFEQSGMAMPLPTRIVL 211



 Score = 45.5 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+ +A+      +++ V  E  ++         L +           
Sbjct: 270 FASTLAILTSAGIPLVEAIESAAATTNNAVVIEKMKIANE-----GLQKGERLTGMITST 324

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G+L   L   S    +      K     +E      +   +  
Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLVKTSDYYEEELETAIKQLLSLLEPAMIIVMGVIIGG 384

Query: 139 CVSTLVYFTS 148
            V++++    
Sbjct: 385 IVASVMLPMF 394


>gi|283778971|ref|YP_003369726.1| type II secretion system protein [Pirellula staleyi DSM 6068]
 gi|283437424|gb|ADB15866.1| type II secretion system protein [Pirellula staleyi DSM 6068]
          Length = 309

 Score = 46.7 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 5/159 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIET 58
           +    +KR      D P  L+++     AGL    A+  I     +  P+ SEFR     
Sbjct: 141 VNRSRQKRVEMIEQDLPLTLELLATLSEAGLGFDAAMQRIQSTRLAVRPLASEFRSYQAD 200

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G   ++S+ R+   + +  +S F + +    QLG  +++ L   +  +RDR+  +A 
Sbjct: 201 LLAGRPRTQSLRRLSSRIQVPAISIFVSALVQAEQLGMGIAQVLRRQADDMRDRRRERA- 259

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
                  +     +I  +   +  L  +T   +   L  
Sbjct: 260 --NAFAMSLTVKRVIPLVVCFLPGLFVWTLGPFFVQLFQ 296


>gi|160937867|ref|ZP_02085225.1| hypothetical protein CLOBOL_02759 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439093|gb|EDP16847.1| hypothetical protein CLOBOL_02759 [Clostridium bolteae ATCC
           BAA-613]
          Length = 352

 Score = 46.7 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/165 (10%), Positives = 49/165 (29%), Gaps = 10/165 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           ++       I   + A +P+ + +A++   ++     +    +                 
Sbjct: 14  EELSAFCLQISLLLEAAVPLEEGLAIMAEDAASQGEKDMLLYMAEGVELGDP-----FFK 68

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                     +   ++   Q  G + + + +LS        +   ++           ++
Sbjct: 69  VMEDTGVFPAYVVRMAKLGQQTGTMDQMMKSLSDYYEKEYRLLRAIKNAVTYPVMMVVML 128

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             + F + + V          L     G  +  VAA+ M +G  +
Sbjct: 129 LVVLFVLFSKVMPVFNKVYEQL-----GAQMPPVAASAMRLGGWL 168


>gi|302669442|ref|YP_003829402.1| Flp pilus assembly protein TadC [Butyrivibrio proteoclasticus B316]
 gi|302393915|gb|ADL32820.1| Flp pilus assembly protein TadC [Butyrivibrio proteoclasticus B316]
          Length = 486

 Score = 46.7 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 10/137 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---------QSSDPVRSE 51
           +   I+KR    L D+P  +  +V  + AG+ + + +  +           Q       E
Sbjct: 326 LAKQIEKRNEGLLKDYPGLVSQMVLYLGAGMTMRNIIGKLSENYVAKLKAGQEKSFAYEE 385

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILR 110
             R       G S S++          Q+ +  ST++S    +    L   L   +R  +
Sbjct: 386 LLRTTRELAAGKSESDAYEEFGYRCGGQQYTRLSTLLSQNLRKGNSELLRLLNEEARKSQ 445

Query: 111 DRKNMKAKVQALSMEAK 127
           + +  +A+        K
Sbjct: 446 EDRLDRARKAGEEAGTK 462


>gi|83858598|ref|ZP_00952120.1| General secretion pathway protein F [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853421|gb|EAP91273.1| General secretion pathway protein F [Oceanicaulis alexandrii
           HTCC2633]
          Length = 399

 Score = 46.7 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 59/174 (33%), Gaps = 8/174 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQ 59
           ++ L   R  +      + +D +    +AG+P+  A+ V+ G++ +  V    R + +  
Sbjct: 49  LRFLDSARPGRLE--LADFMDDLAALHKAGVPLRRALDVLSGEAVTPRVARLARLMADRL 106

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G  LS         +        +  ++   +L G L   L   +++LR +     ++
Sbjct: 107 DAGAELS-----AAARVDDANDIQLAAELAKAGELSGELELTLRAGAKVLRSQAEFVKRL 161

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           ++          +       +S +        +    N     + + +     +
Sbjct: 162 RSAMAYPSFLLVLSLFAVIALSLVAGPALEPLLAETTNGKADGLRMVLGFGAFV 215


>gi|221069114|ref|ZP_03545219.1| general secretion pathway protein F [Comamonas testosteroni KF-1]
 gi|220714137|gb|EED69505.1| general secretion pathway protein F [Comamonas testosteroni KF-1]
          Length = 407

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 58/170 (34%), Gaps = 14/170 (8%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVR 74
                  +   V +GLP+  A+A +  ++ D         +    + G S + ++ +  R
Sbjct: 70  LAVWTRQLSGLVSSGLPIERALAALAEEAEDERQHQLVAALRAEVNAGSSFARALEQHPR 129

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                E S     +    +  G+L   L NL+  L  R+ +++K+   S+       +  
Sbjct: 130 -----EFSDIFCAVIGAGESSGSLGPVLENLADDLEARQALQSKLIGASLYPA---IVTL 181

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-----IGIMVM 179
                V  LV +  P    V     R    L V    +       G  ++
Sbjct: 182 VAIVIVVFLVSYVVPQVAGVFAGTKRALPFLTVVMLGISDFVRHYGWFML 231



 Score = 35.5 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/129 (11%), Positives = 33/129 (25%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+  A+       ++       R      L L    +          
Sbjct: 276 FAGTLAMLAGAGVPILKALQAAAETLNNR----ALRADAMDALVLVREGAPLASALAQKK 331

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +       + +   +  G L   L   +  L      +A   A  +E      +   +  
Sbjct: 332 R-FPGLVAMFARLGEQTGQLPLMLQRAATQLSTEVQRRAMHLATILEPLLIVVMGLVVML 390

Query: 139 CVSTLVYFT 147
            V  ++   
Sbjct: 391 IVLAVLMPI 399


>gi|30025011|gb|AAO61482.1| unknown [Legionella pneumophila]
          Length = 113

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/109 (11%), Positives = 26/109 (23%), Gaps = 4/109 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +     ++     D       +   + AG+PV +++  +  Q+      E    +     
Sbjct: 9   QRAASSKSKVSAADLALLTRQLATLLAAGIPVEESLRGVSEQTEKDKVRELIIGVR---- 64

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
              L                           +  G L   L  L+    
Sbjct: 65  SKVLEGYGLAQAMAQYPNAFPELYRATVGSGEQTGRLDVVLEKLADYTE 113


>gi|167618601|ref|ZP_02387232.1| type IV pilus biogenesis protein PilC [Burkholderia thailandensis
           Bt4]
 gi|257137852|ref|ZP_05586114.1| type IV pilus biogenesis protein PilC [Burkholderia thailandensis
           E264]
          Length = 387

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 45/153 (29%), Gaps = 6/153 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AGL ++ ++ ++   +  + +      +      G   S ++ R  R   
Sbjct: 53  FARQLAGLLHAGLALAPSLELLAQATRRNEMPRIAAGLAREIVAGRQFSAALRRYPRQFD 112

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                 F   +    +  G L+  LA L+          A+V+       A   +  ++ 
Sbjct: 113 P-----FFCQLVAVGETAGALAAVLARLADDRERAAAQYARVRGALAYPVAVLLVALAIT 167

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             +   V  T                   +A +
Sbjct: 168 AALLIWVVPTFEQIFAGFGAALPAPTRFVLALS 200


>gi|300696695|ref|YP_003747356.1| general secretion pathway protein F [Ralstonia solanacearum
           CFBP2957]
 gi|299073419|emb|CBJ52933.1| General secretion pathway protein F [Ralstonia solanacearum
           CFBP2957]
          Length = 395

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 8/147 (5%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLS 66
           R   F          ++  + AGL V +A+  +   +     RS    V+     G  LS
Sbjct: 53  RRHDFSLLL--FSQELLTLLEAGLSVFEALETLHEKEKRPFARSVLASVLARLSEGKPLS 110

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +   M    P        T I   ++   NL ++L+           ++AK+ + S+  
Sbjct: 111 TAFGEMPELFP-----ALYTSIIRTAERTSNLPQSLSRYVEYQTRLDGVRAKIASASIYP 165

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMN 153
              A +  ++   +   V         
Sbjct: 166 MVLAVVGAAVMLFLLGYVVPRFAVVYQ 192


>gi|330823243|ref|YP_004386546.1| type II secretion system F domain-containing protein
           [Alicycliphilus denitrificans K601]
 gi|329308615|gb|AEB83030.1| Type II secretion system F domain protein [Alicycliphilus
           denitrificans K601]
          Length = 403

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 52/161 (32%), Gaps = 6/161 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMP 77
               +    +A +P+  A+A++   + +     F   V E    G SL +S+    R   
Sbjct: 70  FTREMAHLKQANMPLDKALAMLRETAGNERIKAFLASVQEEVRGGKSLYQSLQPFER--- 126

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
             ++     V+    +  G+L   L  L+  L     ++  + +          +     
Sbjct: 127 --DLGRQYLVLIRAGEASGSLHTILQELTTQLEADDKLRNYIISSMTYPAILLVVAVLSV 184

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             +   V        + + +       L + A+  + G  +
Sbjct: 185 ILLLAFVVPQFRQIFDSMGDALPYSTQLVLQASDFVRGHWM 225


>gi|220927958|ref|YP_002504867.1| hypothetical protein Ccel_0505 [Clostridium cellulolyticum H10]
 gi|219998286|gb|ACL74887.1| hypothetical protein Ccel_0505 [Clostridium cellulolyticum H10]
          Length = 241

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV 41
           +   IKKR  +    FP+ ++ +   + AGL +S A   I 
Sbjct: 137 LSRKIKKRHLEIQLSFPDFINKLALMLNAGLTMSKAWEKIS 177


>gi|82703704|ref|YP_413270.1| type II secretion system protein [Nitrosospira multiformis ATCC
           25196]
 gi|82411769|gb|ABB75878.1| type II secretion system protein [Nitrosospira multiformis ATCC
           25196]
          Length = 394

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 50/153 (32%), Gaps = 6/153 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
             +    ++  + AGL + +++  +   +  +  R     ++   + G++LS ++    +
Sbjct: 58  LAHFSQELLSLLVAGLSLVESIETLADKEQDNGTRKIIEGLLARLYEGVTLSRALESFPQ 117

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
             P           +  S+  G+L EAL            ++ K+   S+       I  
Sbjct: 118 AFPP-----LYIATARASERTGDLPEALTRFIAYQTQMDLVRKKLIGASIYPVLLLIIGL 172

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
            +   +   V             D     +L +
Sbjct: 173 LVAIFLLIFVVPKFSAIYEDTGADLPFLSVLLI 205


>gi|160935909|ref|ZP_02083283.1| hypothetical protein CLOBOL_00802 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441151|gb|EDP18868.1| hypothetical protein CLOBOL_00802 [Clostridium bolteae ATCC
           BAA-613]
          Length = 426

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/161 (12%), Positives = 45/161 (27%), Gaps = 11/161 (6%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV----------GQSSDPVRSE 51
           ++  ++R  +   D+P  L  +   + AG+ +  A   I            +    V  E
Sbjct: 265 QNRTEERKRQLALDYPEVLSRLTIFLGAGMSIRTAWDKIALEYKMMVEQGRRRKRYVYEE 324

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQS-QLGGNLSEALANLSRILR 110
                     G+   ++     R   LQ       ++         NL   L        
Sbjct: 325 MYETSCQMKGGVPEGKAFEEFGRRCGLQSYMKLGGLLEQNRKNGSKNLRNLLRTEMTDAF 384

Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
           +++  +A+        K    +   L   +  +       +
Sbjct: 385 EQRKHQARRLGEEAGTKLLLPLFILLSVVMVMIAVPALMEF 425


>gi|134096981|ref|YP_001102642.1| type II secretion system protein [Saccharopolyspora erythraea NRRL
           2338]
 gi|291006274|ref|ZP_06564247.1| type II secretion system protein [Saccharopolyspora erythraea NRRL
           2338]
 gi|133909604|emb|CAL99716.1| type II secretion system protein [Saccharopolyspora erythraea NRRL
           2338]
          Length = 267

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 65/188 (34%), Gaps = 6/188 (3%)

Query: 2   KHLIKKRTA-----KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI 56
           +  ++ R +     +   +    + ++V  +RAG   + A       S+  +   FR + 
Sbjct: 74  RRYVRSRRSFRVGVERSAELSGGIRLLVAGLRAGAHPAVAAEGAAADSAPAISGVFRDLA 133

Query: 57  ETQHLGLSLSESISRMVRYMP-LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
               LG  +   +          Q ++       +  + G  L++ L  + R +  R   
Sbjct: 134 SAAKLGGDIPTVLDNGGHPAELRQPLARLGRAWRLAERHGVALADLLDAVRRDVDHRVAF 193

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
              +++     +A+A ++  LP     L        + VL     G  +L V  A +  G
Sbjct: 194 IRDLESKMAGPRATAAMLAGLPLLGLLLGEAVGAAPLAVLTGQAFGQAVLVVGVALLCAG 253

Query: 176 IMVMRLMI 183
           +     + 
Sbjct: 254 LFWTLRLT 261


>gi|194366101|ref|YP_002028711.1| type II secretion system protein [Stenotrophomonas maltophilia
           R551-3]
 gi|194348905|gb|ACF52028.1| type II secretion system protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 311

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 56/147 (38%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           +   +K+R      + P  +D++      G  +  ++  +      +   +  E +    
Sbjct: 147 LSSWVKRRRRAVDKELPLLIDLLRLLQGVGFSMDQSLQTLGDKLRDALPVLGGELQEANV 206

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G + ++S+ R+       ++S    +I      GG + E L   S  LR+++    
Sbjct: 207 AYTHGRTRAQSLRRLSEVYADDDLSSLMQLILQVHAHGGAVQEPLRQFSIRLREQRRNTL 266

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           K +   +  K +  ++ +L   +  ++
Sbjct: 267 KEKVGKLSVKMTVVMMLTLLPALMLVL 293


>gi|288930963|ref|YP_003435023.1| type II secretion system F domain protein [Ferroglobus placidus DSM
           10642]
 gi|288893211|gb|ADC64748.1| Type II secretion system F domain protein [Ferroglobus placidus DSM
           10642]
          Length = 635

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 50/148 (33%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
            K     P   + ++    AG   + A  +   ++  P+    +   E    G+S   + 
Sbjct: 413 EKLSAQLPLYFNRVLSLAEAGKDTTTAFKLAAEEARPPLSKYVKVFAEMLDRGISRDRAF 472

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
             + R  P  ++   + ++S    + G +++ L +L   L      + +  +++      
Sbjct: 473 QWLFRITPSTDLRLAARILSKTVDVSGRVTQVLISLVGELMRLNAFRKERDSVAKTYGGM 532

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
             +   L   ++  +     G    L  
Sbjct: 533 MVLAALLFLGIAVAISAMLLGQFEKLGQ 560



 Score = 35.9 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 60/180 (33%), Gaps = 6/180 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K  I  R      +       ++   +AG+ + +AV  +V      +  EF R+     
Sbjct: 164 LKGKISSRREDIDFNLHTLYITLLGFAKAGISIMEAVKELVTMDLGEISKEFARIYYAVR 223

Query: 61  L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
               +L  ++  +    P  +++     I    + GG+L   +      L   + +    
Sbjct: 224 YGNTTLKAAMLEVAATTPSAKLADLLRGIVGVMEAGGDLGRYMEERIESLEVERKIMYTE 283

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGY-----MNVLINDPRGHMLLGVAAAFMLI 174
               +E  A  ++  SL      +    +        ++++     G M L   A  + +
Sbjct: 284 YLKKLEMIAEVYLTVSLAIPTMVVSIQLAKSIAGQADISMVYGLVYGFMPLSSLALIIAL 343


>gi|110833084|ref|YP_691943.1| hypothetical protein ABO_0223 [Alcanivorax borkumensis SK2]
 gi|110646195|emb|CAL15671.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
          Length = 286

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS---LSESISRMVR 74
               ++   + AGL +  A  V   QS   +     R+     L  S      ++  +  
Sbjct: 143 EFAQLLSMLLEAGLSIERAFRVAAVQSRPMIPGLVHRLDRFNRLMESGAERGVALDEIGE 202

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
              +  +   + ++     LGG +SE++  L    +D +  + K +   + AK +  ++ 
Sbjct: 203 GKQIPVLHSLTRLLKQGGALGGAISESIEQLILEAQDVEKSRIKEEVNRVGAKMTVAMMI 262

Query: 135 SLPFCVSTLV 144
            +   +  +V
Sbjct: 263 FMMPALFIIV 272


>gi|255505483|ref|ZP_05346368.3| putative bacterial type II secretion system protein F domain
           protein [Bryantella formatexigens DSM 14469]
 gi|255267486|gb|EET60691.1| putative bacterial type II secretion system protein F domain
           protein [Bryantella formatexigens DSM 14469]
          Length = 490

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 44/127 (34%), Gaps = 9/127 (7%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-----GQSSDPVR--SEFRR 54
           +   + R  + L D+P+ L  +   + AGL + +A   I       ++ +      E   
Sbjct: 333 QQAQEHRRRQMLMDYPDLLFKLSMLLNAGLTMQNAFFKIALEYRDRETPEVRFAYEEMLT 392

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL--ANLSRILRDR 112
                  G+  + S     R   +   +   T++S   Q G      L     +  + +R
Sbjct: 393 SYYEMQSGVPEARSYENFGRRCGVGSYNKLGTMLSANLQKGSQGLAKLLQEEAAFSMEER 452

Query: 113 KNMKAKV 119
             M  K+
Sbjct: 453 SQMARKL 459


>gi|213582180|ref|ZP_03364006.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 105

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 36/103 (34%), Gaps = 6/103 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q          R +      G+  S ++  
Sbjct: 8   EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 67

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
             +  P          +    +L G L+E    L+R  + ++ 
Sbjct: 68  WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQ 105


>gi|118431778|ref|NP_148457.2| hypothetical protein APE_2206.1 [Aeropyrum pernix K1]
 gi|116063100|dbj|BAA81218.2| hypothetical protein [Aeropyrum pernix K1]
          Length = 284

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 68/192 (35%), Gaps = 10/192 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           + +          N L  I  + + GL    ++  +  +   P+    RR+  +  LG+S
Sbjct: 61  VTRANKGIGLAMSNFLRDIAETRKTGLSPEQSIISLSARDYGPLTKVVRRIATSLQLGMS 120

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRI----LRDRKNMKAKVQ 120
           L +S+ R VR +           +     +GG   E L  L+R     +  +   + + +
Sbjct: 121 LEDSVRRSVRRIKDWASLSALRFLVDSISVGGGSPEVLDALARYTYGLVSIQDEFRKRTR 180

Query: 121 ALSMEAKASAWIIGSLPFCVSTL----VYFTSPGYMNVLINDP--RGHMLLGVAAAFMLI 174
              +     A I+ +    +       +   +PG    ++  P   G + L +A   ML 
Sbjct: 181 IYIIMPYLGAIIVAASTLVMLGYTIKTLQVVNPGGETSVVAVPENIGVVGLILAIGVMLN 240

Query: 175 GIMVMRLMINFD 186
             M+  +     
Sbjct: 241 SWMMGLMAGKIR 252


>gi|145294433|ref|YP_001137254.1| hypothetical protein cgR_0388 [Corynebacterium glutamicum R]
 gi|140844353|dbj|BAF53352.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 258

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 61/183 (33%), Gaps = 7/183 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--PVRSEFRRVIETQH 60
           H   +RT +      + L +   ++RAG+ + DA+   +  ++    +    +       
Sbjct: 75  HAAAQRTKQ-SLQLASFLSLCAGNLRAGVTMVDAMDYALDNTTPDKFLSPTLQTAARQAR 133

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S    +          ++     +     + G  L   +  +   +  ++      +
Sbjct: 134 SGGSGPRVLIDASL----PDLQRLGHLWETSERHGIPLVALIDQMRSRISSKQRHGESTR 189

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A     +A+A I+  LP     +        + +L     G +LL +       G +V  
Sbjct: 190 AALQGPQATAVILTVLPLAGLLMGTAMGANPLGILTGGGIGGLLLVIGVGLDAAGFVVTH 249

Query: 181 LMI 183
            ++
Sbjct: 250 KIL 252


>gi|207739025|ref|YP_002257418.1| general secretion pathway gspf-related protein [Ralstonia
           solanacearum IPO1609]
 gi|206592396|emb|CAQ59302.1| general secretion pathway gspf-related protein [Ralstonia
           solanacearum IPO1609]
          Length = 407

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 72/188 (38%), Gaps = 15/188 (7%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            IK R  K           +   +RAGL VS+A+  +  +   P    +RR+ +    GL
Sbjct: 62  KIKNRRRKVDAGL--VCIELGGLLRAGLTVSEALDSLAHRDDHPNVDVYRRLYDGLLSGL 119

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            LSE++ ++    P              ++  G + +AL   ++  + ++ ++ KV + +
Sbjct: 120 PLSEAMKQVEGIFPG-----ILVAAIQANERSGRIPDALDEYAKYAQAQEALRKKVVSAA 174

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMN--VLINDPRGHMLLGVAAAF------MLIG 175
           +           +   +   V        +   +       +LL V          +L+G
Sbjct: 175 VYPATVIGFGLLVVLFLLAYVIPRFAMVYDGTAMQMSGPTRILLAVGHFIHEQGWGLLVG 234

Query: 176 IMVMRLMI 183
           I+++ +++
Sbjct: 235 IVLLGVIV 242



 Score = 35.5 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 33/129 (25%), Gaps = 5/129 (3%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
              +    R G    +A+ +          S   RV         L   +      M   
Sbjct: 278 CASLAMLTRGGYDFPEAMRLAS----PLAISASTRVQLDAARERILEGVLVSHA-LMQTD 332

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
               F+  I    +  G+L+ +   L++  R       +     +E      +   +   
Sbjct: 333 FSDGFAVRILQAGERVGDLAGSFDMLAQTYRRELETMLERTMRLVEPILLMTVASLIGAI 392

Query: 140 VSTLVYFTS 148
           V  +     
Sbjct: 393 VVLMYLPIF 401


>gi|149174857|ref|ZP_01853481.1| type II secretion system protein [Planctomyces maris DSM 8797]
 gi|148846194|gb|EDL60533.1| type II secretion system protein [Planctomyces maris DSM 8797]
          Length = 420

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/161 (9%), Positives = 48/161 (29%), Gaps = 13/161 (8%)

Query: 30  GLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVI 88
           G+P+S  +  +  +++   +   F+ +      G+    S  R ++ +P          +
Sbjct: 97  GIPLSACLLTLAEETNSRQLSRIFQNIANDLEQGVIPEHSFDRHLKSIPH-----HLESL 151

Query: 89  SVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
            +      +L   + +     R  K  + K+      +     +   L + +   V    
Sbjct: 152 ILAGAQTKHLESIIEDYIECQRYLKQSRHKILISLFYSGVLIAVSFLLFYFLMVKVVANF 211

Query: 149 PGYMNVLINDPRGHMLLGVAA-------AFMLIGIMVMRLM 182
                    +     +L              ++G  ++  +
Sbjct: 212 KSIFEGFGTELPSLTVLAFHISDVFSEYGLQMLGWFLLISI 252


>gi|146310314|ref|YP_001175388.1| type IV pilin biogenesis protein [Enterobacter sp. 638]
 gi|145317190|gb|ABP59337.1| type II secretion system protein [Enterobacter sp. 638]
          Length = 398

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 51/156 (32%), Gaps = 4/156 (2%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                +   ++AGL ++ ++ ++  Q       +++ ++      LS   + S  ++  P
Sbjct: 61  EIFRQLATLLQAGLTLAYSLQMLAEQHP---VKQWQALLNNLADDLSEGCAFSDALKKWP 117

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               S     +    +L G L E    L++  + ++ + AKV+           +   + 
Sbjct: 118 -DVFSPLYVSMMKTGELTGKLEECCRQLAQQQKLQQQLSAKVKKALRYPMIILALAVVVV 176

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             + T V                      +  A  +
Sbjct: 177 LAMVTFVLPEFAAIYKTFNTPLPMLTQWVMGFATFV 212


>gi|163857687|ref|YP_001631985.1| putative Flp pilus assembly protein [Bordetella petrii DSM 12804]
 gi|163261415|emb|CAP43717.1| putative Flp pilus assembly protein [Bordetella petrii]
          Length = 332

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR---SEFRRVIE 57
           +   +K R  +   + P  +D++      GL V  +++VIV   +  +     EF     
Sbjct: 167 LVRRVKARKKQAGKELPLLVDLLRLLQGVGLSVDQSLSVIVNDFTPVLPVLGHEFGVSTA 226

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S++R+ +     +++    ++    + GG + E L   ++ +RD++  + 
Sbjct: 227 VYARGRTREQSLARLSQGFDDDDLAAICRLLVQVDRHGGAVQEPLNRFAQRIRDKRRFEL 286

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           K +   +  K +  +I +L   +  +
Sbjct: 287 KEKIGRLTVKMTGVMIVTLLPALLIV 312


>gi|33152246|ref|NP_873599.1| pili/fimbriae biogenesis protein [Haemophilus ducreyi 35000HP]
 gi|33148468|gb|AAP95988.1| protein transport protein HofC-like protein [Haemophilus ducreyi
           35000HP]
          Length = 397

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/175 (11%), Positives = 57/175 (32%), Gaps = 15/175 (8%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71
            +     ++ +   + A +P+  ++ +++    +     +   +I     G + S S+++
Sbjct: 57  SEQITQLINQLAMLLNASVPLKQSLVMVLENVHNIKLYLWLSEIIMLLEAGHAFSASLTK 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M  Y+  QE       +    +  G L+  L N++++    + +  KV+ +         
Sbjct: 117 MNVYLTKQE-----IQLIQMGEQSGRLAIMLDNIAQVRNQSQKLANKVKKIMFYPAIILA 171

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG---------VAAAFMLIGIM 177
           +  S+   +   +                    L           A    + G+ 
Sbjct: 172 VSISVLIGLLLFIVPQFEDLYRNKDQSLPFITQLLFQLSNFLQQYAFILFIGGLF 226


>gi|325698100|gb|EGD39981.1| bacterial type II secretion system protein F [Streptococcus
           sanguinis SK160]
          Length = 408

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 45/162 (27%), Gaps = 7/162 (4%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
               L D       +   + +G+P+++AV ++  Q++        +++       S    
Sbjct: 57  KKIKLKDISLFCKQMSVMLESGIPLNNAVDILEQQATSKNLKSSLKIVSKSLKEGS---- 112

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                              +    +  G L E L  +S           ++Q   +    
Sbjct: 113 QLSKAMLDQEGMFPDLLIRMVQAGEKTGKLDEVLEKMSEHYTKELKTSRQIQGAMIYPAV 172

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
            A++  +    +  +V    P +  +         L      
Sbjct: 173 LAFLAVAAVLALLYVVI---PSFSGIFEQSGMAMPLPTRIVL 211



 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+ +A+      +++ V  E  ++         L +           
Sbjct: 270 FASTLAILTSAGIPLVEAIESAAATTNNAVVIEKMKIANE-----GLQKGERLTGMITST 324

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G+L   L   S    +      K     +E      +   +  
Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLVKTSDYYEEELETAIKQLLSLLEPAMIIVMGVIIGG 384

Query: 139 CVSTLVYFTS 148
            V++++    
Sbjct: 385 IVASVMLPMF 394


>gi|257388194|ref|YP_003177967.1| type II secretion system protein [Halomicrobium mukohataei DSM
           12286]
 gi|257170501|gb|ACV48260.1| type II secretion system protein [Halomicrobium mukohataei DSM
           12286]
          Length = 679

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/179 (11%), Positives = 53/179 (29%), Gaps = 7/179 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQH 60
                R  +      +++  +      GL   + +  +     +      EF+ ++    
Sbjct: 142 FRANAREREVNVLLSDSISFMYALSVGGLNQLEILQAMAKADDTYGECAKEFQSIVLETE 201

Query: 61  LG-LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                   +I       P  E+S F T +      GG+++  L +           + + 
Sbjct: 202 YFDTDYRTAIRNQALETPSDELSQFLTDMLSIINSGGDMTSFLEDQKDKHMRTAKQEQQK 261

Query: 120 QALSMEAKASAWII----GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
              ++E     ++       L   +  ++         +L     G + L  A   +L+
Sbjct: 262 MLDTLELFGEMYMTLSLFPLLLIIILVIMSMMGDAQNRLLYGTVYGLIPLTGAGFLVLV 320


>gi|207725097|ref|YP_002255494.1| general secretion pathway gspf-related protein [Ralstonia
           solanacearum MolK2]
 gi|206590327|emb|CAQ37288.1| general secretion pathway gspf-related protein [Ralstonia
           solanacearum MolK2]
          Length = 391

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 8/147 (5%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLS 66
           R   F          ++  + AGL V +A+  +   +     RS    V+     G  LS
Sbjct: 49  RRHDFSLLL--FSQELLTLLEAGLSVFEALETLHEKEKRPFARSVLASVLARLSEGKPLS 106

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +   M    P        T I   ++   NL ++L+           ++AK+ + S+  
Sbjct: 107 TAFGEMPELFP-----ALYTSIIRTAERTSNLPQSLSRYVEYQTRLDGVRAKIASASIYP 161

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMN 153
              A +  ++   +   V         
Sbjct: 162 MVLAVVGAAVMLFLLGYVVPRFAVVYQ 188


>gi|256393178|ref|YP_003114742.1| type II secretion system protein [Catenulispora acidiphila DSM
           44928]
 gi|256359404|gb|ACU72901.1| type II secretion system protein [Catenulispora acidiphila DSM
           44928]
          Length = 297

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 59/156 (37%), Gaps = 1/156 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++    +R    +      LD++  S+ AG  V  A+            +  R+ + T  
Sbjct: 142 IRAEAAERRKDMVRALSAFLDLVTLSLAAGGGVEAALKEASLVGDGWAFTALRKALATAE 201

Query: 61  -LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
              ++  +++ ++   + +  +   +  +++    G  +  +L+  +  LR     +A+ 
Sbjct: 202 ISRVAPWQTLGQLGAELDVPALGELAASLALAGSEGAKVRASLSAKAATLRANGLAEAQG 261

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +A +   + S  ++      +  + Y      MN L
Sbjct: 262 EANAASERMSLPVVVMGLGFMLLIGYPAMAHVMNGL 297


>gi|323350762|ref|ZP_08086422.1| bacterial type II secretion system protein F [Streptococcus
           sanguinis VMC66]
 gi|322123042|gb|EFX94741.1| bacterial type II secretion system protein F [Streptococcus
           sanguinis VMC66]
          Length = 408

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 45/162 (27%), Gaps = 7/162 (4%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
               L D       +   + +G+P+++AV ++  Q++        +++       S    
Sbjct: 57  KKIKLKDISLFCKQMSVMLESGIPLNNAVDILEQQATSKNLKSSLKIVSKSLKEGS---- 112

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                              +    +  G L E L  +S           ++Q   +    
Sbjct: 113 QLSKAMLDQEGMFPDLLIRMVQAGEKTGKLDEVLEKMSEHYTKELKTSRQIQGAMIYPAV 172

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
            A++  +    +  +V    P +  +         L      
Sbjct: 173 LAFLAVAAVLALLYVVI---PSFSGIFEQSGMAMPLPTRIVL 211



 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+ +A+      +++ V  E  ++         L +           
Sbjct: 270 FASTLAILTSAGIPLVEAIESAAATTNNAVVIEKMKIANE-----GLQKGERLTGMITST 324

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G+L   L   S    +      K     +E      +   +  
Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLVKTSDYYEEELETAIKQLLSLLEPAMIIVMGVIIGG 384

Query: 139 CVSTLVYFTS 148
            V++++    
Sbjct: 385 IVASVMLPMF 394


>gi|327458557|gb|EGF04907.1| bacterial type II secretion system protein F [Streptococcus
           sanguinis SK1]
          Length = 408

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 45/162 (27%), Gaps = 7/162 (4%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
               L D       +   + +G+P+++AV ++  Q++        +++       S    
Sbjct: 57  KKIKLKDISLFCKQMSVMLESGIPLNNAVDILEQQATSKNLKSSLKIVSKSLKEGS---- 112

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                              +    +  G L E L  +S           ++Q   +    
Sbjct: 113 QLSKAMLDQEGMFPDLLIRMVQAGEKTGKLDEVLEKMSEHYTKELKTSRQIQGAMIYPAV 172

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
            A++  +    +  +V    P +  +         L      
Sbjct: 173 LAFLAVAAVLALLYVVI---PSFSGIFEQSGMAMPLPTRIVL 211



 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+ +A+      +++ V  E  ++         L +           
Sbjct: 270 FASTLAILTSAGIPLVEAIESAAATTNNAVVIEKMKIANE-----GLQKGERLTGMITST 324

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G+L   L   S    +      K     +E      +   +  
Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLVKTSDYYEEELETAIKQLLSLLEPAMIIVMGVIIGG 384

Query: 139 CVSTLVYFTS 148
            V++++    
Sbjct: 385 IVASVMLPMF 394


>gi|309790163|ref|ZP_07684735.1| hypothetical protein OSCT_0686 [Oscillochloris trichoides DG6]
 gi|308227748|gb|EFO81404.1| hypothetical protein OSCT_0686 [Oscillochloris trichoides DG6]
          Length = 309

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 61/192 (31%), Gaps = 11/192 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59
           + +   +       D   A+  +   +++G     A+  I+      P+R E+  ++  Q
Sbjct: 112 LAYAKARYIHALDRDLTTAVGRLSALLKSGSGFRSAIERIIRDMPTCPLRDEWAFLLTRQ 171

Query: 60  HLG---LSLSESISRMVRYMPLQEVSFFSTVI----SVQSQLGGNLSEALANLSRILRDR 112
                  S++     +            +T++        Q    L+         ++D 
Sbjct: 172 GANLATGSIATPQQVVAALSLQTLSPRHATLLSHLSVAVGQPQDVLARRCEAAYSAIQDS 231

Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH---MLLGVAA 169
              + +      + + S   +G     ++  +  T    + +    P G    +L+  A 
Sbjct: 232 DRRREEAATELAQMRYSGIAVGLAGVLMAIYLTATQWERVLIAYQTPLGIIVGILVISAL 291

Query: 170 AFMLIGIMVMRL 181
              +IG  V+  
Sbjct: 292 LLPIIGGFVLAR 303


>gi|171320758|ref|ZP_02909768.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
 gi|171093996|gb|EDT39104.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
          Length = 394

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 55/176 (31%), Gaps = 12/176 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQHLGLSLSESISRM 72
                L  +   + AGL + +A+  +  ++      +    R++     G  LS ++++ 
Sbjct: 57  ALALFLQELSTLLDAGLVLIEALEALRDKADSGKDAKRVIDRILAVMTEGRPLSAALAQQ 116

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P              S+  G L   L    +     + ++ +V    +       +
Sbjct: 117 PALFPP-----LLVATIESSEGSGQLPVVLKRYQQYEVRIEQVRKRVTGALIYPAVVIGV 171

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR-GHMLLGVAAAF----MLIGIMVMRLMI 183
             ++   ++  V          L   P     +L  A+      M +G+ V   + 
Sbjct: 172 GIAILLFMAFFVIPRFAVVFESLATLPATARAMLWWASLLRENGMAVGLAVAASIA 227


>gi|332365027|gb|EGJ42792.1| bacterial type II secretion system protein F [Streptococcus
           sanguinis SK355]
          Length = 408

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 45/162 (27%), Gaps = 7/162 (4%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
               L D       +   + +G+P+++AV ++  Q++        +++       S    
Sbjct: 57  KKIKLKDISLFCKQMSVMLESGIPLNNAVDILEQQATSKNLKSSLKIVSKSLKEGS---- 112

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                              +    +  G L E L  +S           ++Q   +    
Sbjct: 113 QLSKAMLDQEGMFPDLLIRMVQAGEKTGKLDEVLEKMSEHYTKELKTSRQIQGAMIYPAV 172

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
            A++  +    +  +V    P +  +         L      
Sbjct: 173 LAFLAVAAVLALLYVVI---PSFSGIFEQSGMAMPLPTRIVL 211



 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+ +A+      +++ V  E  ++         L +           
Sbjct: 270 FASTLAILTSAGIPLVEAIESAAATTNNAVVIEKMKIANE-----GLQKGERLTGMITST 324

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G+L   L   S    +      K     +E      +   +  
Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLVKTSDYYEEELETAIKQLLSLLEPAMIIVMGVIIGG 384

Query: 139 CVSTLVYFTS 148
            V++++    
Sbjct: 385 IVASVMLPMF 394


>gi|229587496|ref|YP_002860534.1| putative bacterial type II secretion system protein F domain
           protein [Clostridium botulinum Ba4 str. 657]
 gi|229260234|gb|ACQ51271.1| putative bacterial type II secretion system protein F domain
           protein [Clostridium botulinum Ba4 str. 657]
          Length = 164

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 56/157 (35%), Gaps = 3/157 (1%)

Query: 1   MKHLIKKRTAKF--LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           +K  I K    F   ++ P  L+ +++ ++ G+PV   +  I               +  
Sbjct: 5   IKDPIDKYKESFLKDNELPAVLETLIQGLQIGMPVYPILLYISNNKKGNTADLINLCVTK 64

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK-NMKA 117
            + G+ +++++  +            + +I    +   NL + L  L + + + + N+K 
Sbjct: 65  VNSGMDINKALREVAEKSLNDYFLRMALIIEKTDRSVINLDKQLEYLQQDMEEERINIKT 124

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +       A     +IG     +  ++         +
Sbjct: 125 EHADKLDNALFFPMLIGYFIPLIIMILVPLLRQMTKL 161


>gi|148827451|ref|YP_001292204.1| putative type IV pilin secretion protein [Haemophilus influenzae
           PittGG]
 gi|148718693|gb|ABQ99820.1| putative type IV pilin secretion protein [Haemophilus influenzae
           PittGG]
          Length = 406

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 64/162 (39%), Gaps = 6/162 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71
             +    L+ +   +++ +P+ +++ ++    +  + +E+  R++++   GL+ S++I +
Sbjct: 56  NSEISELLNQLATLLQSAIPLKNSLQILQQNCTQIMLNEWLERLLQSIESGLAFSQAIEQ 115

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +Y+  QE       +    ++ G L+     ++        ++ K+Q + +       
Sbjct: 116 QEKYLTQQE-----IQLIQVGEMTGKLAIVCKKIATHRSQSLALQRKLQKIMLYPSMVLG 170

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           I   L   +   +        +    +      + ++ +  L
Sbjct: 171 ISLLLTLALLLFIVPQFAEMYSGNNAELPTITAILLSISNFL 212



 Score = 36.3 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/137 (8%), Positives = 43/137 (31%), Gaps = 4/137 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS--EFRRVIETQHLGLSLSESIS--R 71
             N    +   ++AG+P++ A+   + ++            ++  + +   L        
Sbjct: 263 LVNFSQSLQIMLQAGVPLNQALDSFLPRTQTWQTKKTLVNDMVLDKEVRSILQWVSQGYA 322

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
               +        +  +    +  G L+  L ++    +++ N +  + +  +E      
Sbjct: 323 FSNSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIVDNYQEKLNHQIDLLSQMLEPLMMVI 382

Query: 132 IIGSLPFCVSTLVYFTS 148
           I   +   +  +     
Sbjct: 383 IGSLIGIIMMGMYLPIF 399


>gi|83749454|ref|ZP_00946446.1| General secretion pathway protein F [Ralstonia solanacearum UW551]
 gi|207738421|ref|YP_002256814.1| general secretion pathway gspf-related protein [Ralstonia
           solanacearum IPO1609]
 gi|83723891|gb|EAP71077.1| General secretion pathway protein F [Ralstonia solanacearum UW551]
 gi|206591787|emb|CAQ58693.1| general secretion pathway gspf-related protein [Ralstonia
           solanacearum IPO1609]
          Length = 391

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 8/147 (5%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLS 66
           R   F          ++  + AGL V +A+  +   +     RS    V+     G  LS
Sbjct: 49  RRHDFSLLL--FSQELLTLLEAGLSVFEALETLHEKEKRPFARSVLASVLARLSEGKPLS 106

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +   M    P        T I   ++   NL ++L+           ++AK+ + S+  
Sbjct: 107 TAFGEMPELFP-----ALYTSIIRTAERTSNLPQSLSRYVEYQTRLDGVRAKIASASIYP 161

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMN 153
              A +  ++   +   V         
Sbjct: 162 MVLAVVGAAVMLFLLGYVVPRFAVVYQ 188


>gi|293400659|ref|ZP_06644804.1| putative bacterial type II secretion system protein F domain
           protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305685|gb|EFE46929.1| putative bacterial type II secretion system protein F domain
           protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 342

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/149 (10%), Positives = 46/149 (30%), Gaps = 5/149 (3%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
                ++AG  +   + +I  Q  +              L     +  +    +   +  
Sbjct: 14  QFGLILQAGYGLEQGLHLIAEQLDEQELKTLV-----CRLNEEREKQPTLADTFAACEVF 68

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F+  +    ++ GNL E + +L+   +    M  +++           ++  +   V+
Sbjct: 69  DDFTIHMISIGEISGNLDEVMLSLADYYQRMDEMSNQLRQALSYPMILLLMMLCVVGVVA 128

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             V       +  L +D     ++ +   
Sbjct: 129 WKVLPLFQDVLRSLGSDLSTQAVMFMQFG 157


>gi|225386976|ref|ZP_03756740.1| hypothetical protein CLOSTASPAR_00726 [Clostridium asparagiforme
           DSM 15981]
 gi|225046988|gb|EEG57234.1| hypothetical protein CLOSTASPAR_00726 [Clostridium asparagiforme
           DSM 15981]
          Length = 416

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 38/125 (30%), Gaps = 12/125 (9%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV----------GQSSDPVRSEF 52
              K+R  + L D+P  +  ++  + AG+ V  A   I            ++   V  E 
Sbjct: 256 KAAKQRENQLLMDYPEVVSKLMIFLGAGMTVRTAWERIAGDYRDMLGSGRRTPRHVYEEM 315

Query: 53  RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112
                    G+   ++     R   L       +++    + G      L      + + 
Sbjct: 316 YETCCQMSRGVPEGQAYGEFGRRCGLLPYMKLCSLLEQNRKNGSRNVRELLR--AEMTEA 373

Query: 113 KNMKA 117
             ++ 
Sbjct: 374 FELRK 378


>gi|78223072|ref|YP_384819.1| type II secretion system protein [Geobacter metallireducens GS-15]
 gi|78194327|gb|ABB32094.1| type II secretion system protein [Geobacter metallireducens GS-15]
          Length = 402

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 54/152 (35%), Gaps = 9/152 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           ++  ++AGLP+  A+  I+ +     +    + V E    G++LS+++ +  +  P    
Sbjct: 72  LLVLIKAGLPIIQALDTILERFDRGQLADILKEVRENVKGGMALSDALEKYPKAFPH--- 128

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                      +  G+L   +      L+  + ++ +  +  +       ++      ++
Sbjct: 129 --LYVASVRAGERTGDLPLTIRRYIAFLKRVEEVRKRFVSALVYPS---ILVTVATIAIA 183

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
            L+ +  P +  V  +      L         
Sbjct: 184 FLLVYVVPTFSQVYADAGSQLPLPTRILISFS 215



 Score = 36.3 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/135 (11%), Positives = 52/135 (38%), Gaps = 7/135 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
              +    +   + +G+P+ +++ + VG  ++  +     + +     G+SLS +I  + 
Sbjct: 267 AVASFTRTLATVIGSGIPIVESLKMSVGTLNNVVLERRLLQAVVKVEEGMSLSNAIESV- 325

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                + +   +  +    +  G+L E L+++S       + +  +   ++E      + 
Sbjct: 326 -----KFMPPLALRMLGVGETTGSLEEMLSDISEYFESDIDARLHLLTTAIEPAIMIVMG 380

Query: 134 GSLPFCVSTLVYFTS 148
             +   + T+     
Sbjct: 381 LVVGVIIITMYLPVF 395


>gi|83745828|ref|ZP_00942885.1| GspF-related protein [Ralstonia solanacearum UW551]
 gi|83727518|gb|EAP74639.1| GspF-related protein [Ralstonia solanacearum UW551]
          Length = 445

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 72/188 (38%), Gaps = 15/188 (7%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            IK R  K           +   +RAGL VS+A+  +  +   P    +RR+ +    GL
Sbjct: 100 KIKNRRRKVDAGL--VCIELGGLLRAGLTVSEALDSLAHRDDHPNVDVYRRLYDGLLSGL 157

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            LSE++ ++    P              ++  G + +AL   ++  + ++ ++ KV + +
Sbjct: 158 PLSEAMKQVEGIFPG-----ILVAAIQANERSGRIPDALDEYAKYAQAQEALRKKVVSAA 212

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMN--VLINDPRGHMLLGVAAAF------MLIG 175
           +           +   +   V        +   +       +LL V          +L+G
Sbjct: 213 VYPATVIGFGLLVVLFLLAYVIPRFAMVYDGTAMQMSGPTRILLAVGHFIHEQGWGLLVG 272

Query: 176 IMVMRLMI 183
           I+++ +++
Sbjct: 273 IVLLGVIV 280



 Score = 35.1 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 33/129 (25%), Gaps = 5/129 (3%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
              +    R G    +A+ +          S   RV         L   +      M   
Sbjct: 316 CASLAMLTRGGYDFPEAMRLAS----PLAISASTRVQLDAARERILEGVLVSHA-LMQTD 370

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
               F+  I    +  G+L+ +   L++  R       +     +E      +   +   
Sbjct: 371 FSDGFAVRILQAGERVGDLAGSFDMLAQTYRRELETMLERTMRLVEPILLMTVASLIGAI 430

Query: 140 VSTLVYFTS 148
           V  +     
Sbjct: 431 VVLMYLPIF 439


>gi|145638797|ref|ZP_01794406.1| putative type IV pilin secretion protein [Haemophilus influenzae
           PittII]
 gi|145272392|gb|EDK12300.1| putative type IV pilin secretion protein [Haemophilus influenzae
           PittII]
 gi|309750287|gb|ADO80271.1| Type II secretory pathway, component PilC [Haemophilus influenzae
           R2866]
          Length = 406

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 70/174 (40%), Gaps = 9/174 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71
             +    L+ +   +++ +P+ +++ ++    +  + +E+  R++++   GL+ S++I +
Sbjct: 56  NSEISELLNQLATLLQSVIPLKNSLQILQQNCTQIMLNEWLERLLQSIESGLAFSQAIEQ 115

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +Y+  QE       +    ++ G L+     ++        ++ K+Q + +       
Sbjct: 116 QGKYLTQQE-----IQLIQVGEMTGKLAVVCKKIATHRSQSLALQRKLQKIMVYPSMVLG 170

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML---IGIMVMRLM 182
           I   L   +   +        +    +      + ++ +  L   IGI++   +
Sbjct: 171 ISLLLTLALLLFIVPQFAEMYSGNNAELPTITAILLSISNFLKQNIGILLFFAL 224



 Score = 40.1 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/137 (8%), Positives = 44/137 (32%), Gaps = 4/137 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS--EFRRVIETQHLGLSLSESIS--R 71
             N    +   ++AG+P++ A+   + ++            ++  + +   L        
Sbjct: 263 LVNFSRSLQIMLQAGVPLNQALDSFLPRTQTWQTKKTLVNDIVLDKEVRSILQWVSQGYA 322

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
               +        +  +    +  G L+  L +++   +++ N +  + +  +E      
Sbjct: 323 FSDSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIADNYQEKLNHQIDLLSQMLEPLMMVI 382

Query: 132 IIGSLPFCVSTLVYFTS 148
           I   +   +  +     
Sbjct: 383 IGSLIGIIMMGMYLPIF 399


>gi|302380017|ref|ZP_07268496.1| type II secretion system F domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|302312243|gb|EFK94245.1| type II secretion system F domain protein [Finegoldia magna
           ACS-171-V-Col3]
          Length = 363

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 57/159 (35%), Gaps = 10/159 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            L      + A +P+ + + ++  Q     ++    ++ +  + G+S+SES         
Sbjct: 29  FLRQFSILLNAKIPIIEIINLLKEQKEFKQLKPSLDKISDNLNNGMSVSESF------CG 82

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +    F T +    +  G L + + +LS+      ++  K+Q   +       +  +  
Sbjct: 83  DKNFDMFFTSMMKLGEESGRLDKVVYDLSKYYERTYDINKKIQNAMIYPI---ILTVTGI 139

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
             +  ++    P ++++  +      L       +   I
Sbjct: 140 VMLIFMLKNVIPTFVDLFESSDMMLPLSTRILISVSNAI 178


>gi|258511163|ref|YP_003184597.1| Flp pilus assembly protein TadB-like protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477889|gb|ACV58208.1| Flp pilus assembly protein TadB-like protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 284

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 61/174 (35%), Gaps = 10/174 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  + K+           A  +I     AG P+  ++A     +S P++   R V     
Sbjct: 111 LNRVYKRARLLLKRQLRQARLLIALLTEAGAPIERSIAAAESVTSHPLKPYLRDVSIAIG 170

Query: 61  LGLSLSESISR----------MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
                 ++  R          M   + L E + F+ +++  ++    L + +     I  
Sbjct: 171 ASEDAKDAGMRVQTVVEAFMGMAERLHLPEATQFAQLLTQSARYNTPLVDMMFTSLDIEE 230

Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
             ++ +A+++  +  +K S      L   V   ++     Y   ++ +  G  L
Sbjct: 231 RIRDTEAELRYNNAISKISYISTLGLGIPVFGYLFLAVFSYALQILGNGFGISL 284


>gi|116491252|ref|YP_810796.1| Type II secretory pathway/competence component [Oenococcus oeni
           PSU-1]
 gi|116091977|gb|ABJ57131.1| Type II secretory pathway/competence component [Oenococcus oeni
           PSU-1]
          Length = 347

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/196 (9%), Positives = 57/196 (29%), Gaps = 23/196 (11%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57
           ++   K             L ++ + +++G  ++ A   +  I  +SS            
Sbjct: 10  LQKYTKSTKKLPRRQQVEFLSLLGQLIQSGYSINQATNFIQQISRESS------------ 57

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                L+L  +  +   +     ++         +   GNL + L  L+         + 
Sbjct: 58  -WVKNLNLELAKGKNFAFAIKPYLNNSLNFQIGMADRYGNLEKILLQLADFSEKCLKQEN 116

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY-----MNVLINDPRGHMLLGVAAAFM 172
           K++ +        +++  +   V   +      +     ++ +       +L  V    +
Sbjct: 117 KIKQILRYPLVLVFLLIGIAVAVKIFLLPILSSWSNQQRVDFVDEYFWFKVLGVVLMTLL 176

Query: 173 LIGIMV--MRLMINFD 186
            +       + M    
Sbjct: 177 FLFYRWQSFKKMSKLK 192


>gi|39996883|ref|NP_952834.1| type IV pilus biogenesis protein PilC [Geobacter sulfurreducens
           PCA]
 gi|39983771|gb|AAR35161.1| type IV pilus biogenesis protein PilC, putative [Geobacter
           sulfurreducens PCA]
 gi|298505896|gb|ADI84619.1| type II secretion system protein PulF [Geobacter sulfurreducens
           KN400]
          Length = 402

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/164 (10%), Positives = 51/164 (31%), Gaps = 6/164 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66
           R              ++  ++AGLP+  A+  ++ +     +      V E    G++LS
Sbjct: 57  RRKVDNKALLTLNQELLVLIKAGLPIIQALDTVLERVERGTLFDVLAVVREDVKGGMALS 116

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++ +  +  P               +  G+L   +      L+  + ++ +  +  +  
Sbjct: 117 DALEKHTKVFPH-----LYVASVRAGERTGDLQLTIRRYIAFLKRVEEVRKRFISALVYP 171

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
                +       +   V  T         +       + +A +
Sbjct: 172 AILVTVATLAITFLLVYVVPTFSQVYADAGSQLPLPTRILIAFS 215



 Score = 37.8 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 13/134 (9%), Positives = 47/134 (35%), Gaps = 5/134 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
              +    +   + +G+P+ +++ + VG  ++ V              + + E +S    
Sbjct: 267 AVSSFTRTLATVIGSGIPIVESLKMSVGTLNNRVLE-----RRMLEAVVKIEEGMSLSGA 321

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
               + +   +  +    +  G+L E L++++       + +  +   ++E      +  
Sbjct: 322 IESARIMPPLALRMLGVGESTGSLEEMLSDIAEYFEGEIDARLHLLTTAIEPAIMIVMGL 381

Query: 135 SLPFCVSTLVYFTS 148
            +   + T+     
Sbjct: 382 VVGVIIVTMYLPVF 395


>gi|145640234|ref|ZP_01795818.1| putative type IV pilin secretion protein [Haemophilus influenzae
           R3021]
 gi|145274820|gb|EDK14682.1| putative type IV pilin secretion protein [Haemophilus influenzae
           22.4-21]
          Length = 406

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 64/162 (39%), Gaps = 6/162 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71
             +    L+ +   +++ +P+ +++ ++    +  + +E+  +++++   GL+ S++I +
Sbjct: 56  NSEISELLNQLATLLQSAIPLKNSLQILQQNCTQIMLNEWLEQLLQSIESGLAFSQAIEQ 115

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +Y+  QE       +    ++ G LS     ++        ++ K+Q + +       
Sbjct: 116 QGKYLTQQE-----IQLIQVGEMTGKLSVVCKKIATHRSQSLALQRKLQKIMLYPSMVLG 170

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           I   L   +   +        +    +      + ++ +  L
Sbjct: 171 ISLLLTLALLLFIVPQFAEMYSGNNAELPTITAILLSISNFL 212



 Score = 36.6 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/137 (8%), Positives = 43/137 (31%), Gaps = 4/137 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS--EFRRVIETQHLGLSLSESISRMV 73
             N    +   ++AG+P++ A+   + ++            ++  + +   L        
Sbjct: 263 LVNFSQSLQIMMQAGVPLNQALDSFLPRTQTWQTKRTLVNDIVLDKEVRSILQWVSQGYA 322

Query: 74  RYMPLQE--VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
               +        +  +    +  G L+  L +++   + + N +  + +  +E      
Sbjct: 323 FSHSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIAENYQAKLNHQIDLLSQMLEPLMMVI 382

Query: 132 IIGSLPFCVSTLVYFTS 148
           I   +   +  +     
Sbjct: 383 IGSLIGIIMMGMYLPIF 399


>gi|221070078|ref|ZP_03546183.1| type II secretion system protein [Comamonas testosteroni KF-1]
 gi|220715101|gb|EED70469.1| type II secretion system protein [Comamonas testosteroni KF-1]
          Length = 317

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 51/129 (39%), Gaps = 5/129 (3%)

Query: 30  GLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           G+ +   + VI          +  E +   +    G +   S +RM        ++  ++
Sbjct: 183 GMSLDQTLQVIGSDFGNVMPVLSREIQLANQQYSRGGTRERSFARMSEVYQSDNLANLTS 242

Query: 87  VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
           +++   + GG + E L      LR+++  K K     +  K +  ++ +L   +   +  
Sbjct: 243 LMTQIDRYGGAVQEPLRIFGERLREQRKAKMKEMIGKISVKMTGVMVLTLLPALI--IVT 300

Query: 147 TSPGYMNVL 155
             PG++ V+
Sbjct: 301 AGPGFLAVM 309


>gi|310830508|ref|YP_003965609.1| hypothetical protein PPSC2_p0148 [Paenibacillus polymyxa SC2]
 gi|309249975|gb|ADO59541.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
          Length = 292

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 1/147 (0%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R AK + DFP+ + I    + A +P + AV+  V    D  +   +R +    L  SL+E
Sbjct: 144 RKAKLIADFPDFIRITEGYLTANVPFAKAVSECVKYVGDEWKPILQRFVVDCELK-SLNE 202

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++  + R + + E+  F  ++ +  + GG+  +     +  +R+ +     ++    +  
Sbjct: 203 ALDGLKRDVDMFEIREFVALVKLTLEQGGDAKDGFTAQADKIRELQMDMIAIKIGKRQTM 262

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNV 154
                   L   +      T     + 
Sbjct: 263 GIILQGPLLLCNLMVFGLPTVGSMTSF 289


>gi|219882771|ref|YP_002477935.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
 gi|219861777|gb|ACL42118.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
          Length = 419

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/172 (10%), Positives = 40/172 (23%), Gaps = 1/172 (0%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           K++         A   +   +  G     A+A I+              +      +S  
Sbjct: 65  KKSRPKARAMVAASRQLAMYLEVGYDERAAIAEILDDGE-IGDIVLAHGLSEVLKDMSSE 123

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
                              T        GG +++A   ++  L      +AKV+      
Sbjct: 124 GIKMHEAMAKHPYIFPDLMTKTLAAGDKGGFVADAANQVADDLESEDEQRAKVKKALTYP 183

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                +  ++   +   V          L +       L      +   +  
Sbjct: 184 MVVLVLSSAIFVFLMMYVVPKFGSMYTELSHGKAQLPFLTRLVMGVSAQMAW 235


>gi|303248829|ref|ZP_07335079.1| Type II secretion system F domain protein [Desulfovibrio
           fructosovorans JJ]
 gi|302489770|gb|EFL49701.1| Type II secretion system F domain protein [Desulfovibrio
           fructosovorans JJ]
          Length = 409

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/153 (11%), Positives = 42/153 (27%), Gaps = 4/153 (2%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           +    L  +   + AG P+  AV +   Q+          V+      L    +      
Sbjct: 71  ELAVTLRQLANLLSAGFPLLRAVTMAREQTR---SKALAHVLAQVEERLK-EGAALAQAL 126

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                        +   ++  G L   +  L+ I  ++  ++ K+            +  
Sbjct: 127 EEHPGVFPHIQVGLVRAAEASGTLEIVMGTLAGITEEQLALRRKLANALTYPLIMLVVGL 186

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
            +   + T V          L  +     ++ +
Sbjct: 187 GVVLLLVTFVVPRITRIFADLKQELPLATVVLI 219



 Score = 36.6 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 50/135 (37%), Gaps = 7/135 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMV 73
                  ++   +R G+PV  A+  +     + V  +    V      G+SL+ ++ R  
Sbjct: 274 ALTRFARMLGTVLRHGIPVPQALLAVTPVLGNVVLEQNLTEVRREVEEGVSLTLALGRKP 333

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R  P          ++   + GGNL + L ++S ++ +    +  +     E      + 
Sbjct: 334 RIPP------LLVQMAAAGEAGGNLDDMLLSVSAMMENELVSRLTILTALFEPAMILLLG 387

Query: 134 GSLPFCVSTLVYFTS 148
           G + F +  ++    
Sbjct: 388 GGVCFIIMAVLLPIF 402


>gi|302385704|ref|YP_003821526.1| Type II secretion system F domain protein [Clostridium
           saccharolyticum WM1]
 gi|302196332|gb|ADL03903.1| Type II secretion system F domain protein [Clostridium
           saccharolyticum WM1]
          Length = 350

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/153 (9%), Positives = 48/153 (31%), Gaps = 5/153 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
              K +      +       I   + + +P+ + ++V+   +   V  E ++++      
Sbjct: 1   MKTKAKKPYSSRELSAFCLQISILLHSAIPLDEGLSVMAEDA---VWEEEKKLLMQMAEE 57

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             L    S+++          +   ++   +  G L + + +L+        +   ++  
Sbjct: 58  AELGIPFSKVLE--HAGVYPSYVIRMAELGEETGTLDQIMESLAGYYEKEHVLLKNIRNA 115

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                   +++  +   + T V          L
Sbjct: 116 LTYPILMIFMLLVVLLVLFTKVMPVFENVYQQL 148


>gi|262184094|ref|ZP_06043515.1| hypothetical protein CaurA7_08891 [Corynebacterium aurimucosum ATCC
           700975]
          Length = 248

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 56/169 (33%), Gaps = 3/169 (1%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
             +    I   +RAG   + A+        D      R  +        L+         
Sbjct: 79  LASYFGSIAAELRAGSTTASALRRGTDALPDFTPESLRTAL---STAAGLAAQGGSPAVA 135

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
           +   EV  F+ ++++  + G  L+  +      L   +    +  A     +A+A I+  
Sbjct: 136 LTAPEVKRFAALLTLSGRHGVALANLIEQAQSQLDTARRHAGETAASLQGPQATAVILAC 195

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           LP     +        +  L+    G +LL V  A +  G    RL++ 
Sbjct: 196 LPLAGILMGRAMGADSLGFLLGGGLGGVLLDVGVALVCAGFAWSRLILR 244


>gi|254254047|ref|ZP_04947364.1| Type II secretory pathway component PulF [Burkholderia dolosa
           AUO158]
 gi|124898692|gb|EAY70535.1| Type II secretory pathway component PulF [Burkholderia dolosa
           AUO158]
          Length = 409

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 47/159 (29%), Gaps = 8/159 (5%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
               L  +   + AGL + +A+  +    ++    +    R+I     G S S +++   
Sbjct: 73  LALFLQELSTLLDAGLVLIEALEALRDKNEAGRTSKHVIDRIIAAMKQGQSFSTALAGQP 132

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
              P              S+  G L   L    +     + M+ +     +       + 
Sbjct: 133 DIFPP-----LLVATIASSEDSGQLPIVLKRYQQYEGRIEQMRKRATGALIYPSVVIGVG 187

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR-GHMLLGVAAAF 171
            ++   ++  V          LI  P     +L  A   
Sbjct: 188 IAILLFMAFFVIPRFAVVFESLITLPASAQAMLWWATVL 226


>gi|292654912|ref|YP_003534809.1| type IV pilus biogenesis complex membrane subunit [Haloferax
           volcanii DS2]
 gi|291370705|gb|ADE02932.1| type IV pilus biogenesis complex membrane subunit [Haloferax
           volcanii DS2]
          Length = 587

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 59/185 (31%), Gaps = 7/185 (3%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLG 62
           + R     D  P+AL ++ R+V  G  V  A+A            +  E   V     +G
Sbjct: 360 RARVRAVEDGLPDALYLVGRAVSEGEAVESALARAATSVPGETGDLLDEAVGVQRRLRVG 419

Query: 63  LSLSESISR-MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           +  S      ++   P   V+  +T++ + +  G     A+ +++  L     + A+ + 
Sbjct: 420 VVESFRGEYGVLESTPGPRVAGVATLLGLAASEGRPAGRAIVSMADQLSALARLDAEARR 479

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV---LINDPRGHMLLGVAAAFMLIGIMV 178
                  +     ++   +           M     L        L        +   ++
Sbjct: 480 ELASVTETLSNTAAVFGPLVAGATVALADGMAPAKTLDQTAVATPLSTADLGLAVGAYVL 539

Query: 179 MRLMI 183
           +  +I
Sbjct: 540 LSAVI 544


>gi|119872899|ref|YP_930906.1| type II secretion system protein [Pyrobaculum islandicum DSM 4184]
 gi|119674307|gb|ABL88563.1| type II secretion system protein [Pyrobaculum islandicum DSM 4184]
          Length = 248

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 2/142 (1%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESI 69
           +     P  L ++  +V AGL +  AV      +  P+    RRV+    +G  ++ E++
Sbjct: 30  RLEGQIPQVLRVLSDAVSAGLSLRGAVESAAALALRPMADVLRRVLTLSEVGGLTVEEAL 89

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM-EAKA 128
            R+   +P      F+ +++  ++ G  L E L   +R        +  V +        
Sbjct: 90  WRVAGEVPSPNFRRFALIVTEAARSGARLPEVLDVSARSFATVVEFRQSVASQLRPYVAL 149

Query: 129 SAWIIGSLPFCVSTLVYFTSPG 150
              I+  L      L+Y   P 
Sbjct: 150 YYAIVVVLAVLTDVLIYMLLPQ 171


>gi|293374829|ref|ZP_06621132.1| hypothetical protein CUW_2519 [Turicibacter sanguinis PC909]
 gi|292646551|gb|EFF64558.1| hypothetical protein CUW_2519 [Turicibacter sanguinis PC909]
          Length = 268

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/182 (8%), Positives = 51/182 (28%), Gaps = 3/182 (1%)

Query: 3   HLIKKRT---AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
            L++K+              + ++ + V A   + +A+  I      P++ +  ++I + 
Sbjct: 77  MLLRKKKLYNTHIRKQINLYMSLVSQMVSAKQTILNALITIAPNLQSPIKEDVYQLIRSI 136

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            +     +++ +                    +   G   + L+ L       +    + 
Sbjct: 137 EVDGYPYDALDKFSDKYSNDTYLRIFHNQLKLTFRHGGNEDILSELVDEHSSLEVYVDEY 196

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
                  K   +I  +       +            ++   G ++         +  M++
Sbjct: 197 SKKKGFYKNYTYIFMAYLLIFPIMFVIFQGSMYENYVSSTFGLIVSSGIYIITTLIAMIV 256

Query: 180 RL 181
             
Sbjct: 257 EK 258


>gi|190150206|ref|YP_001968731.1| fimbrial biogenesis protein [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307263544|ref|ZP_07545159.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|37929081|gb|AAO64353.1| fimbrial biogenesis protein [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|189915337|gb|ACE61589.1| fimbrial biogenesis protein [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306871187|gb|EFN02916.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 400

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/176 (10%), Positives = 62/176 (35%), Gaps = 11/176 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71
            +     +  +   + A +P+  A+ +++  +       +   +      G ++S S+++
Sbjct: 57  SESITQVIKQLALLLNAAVPLKQALNMLLENTYHIRIYMWLNDLNRLIESGYTMSSSLTK 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +  Y+   E       +    +  G L E L N++      + +  K++ +      +  
Sbjct: 117 LNLYLAKSE-----IQLVRIGEQSGRLGEILQNIAVNRHQTEKLHKKIKKIMFYPVVTLI 171

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           I  +L   +   +    P ++ +     R   L  +      + + +   ++   +
Sbjct: 172 ISVALSLAMLLFIV---PQFIELY--SGREKPLPLITQMLFTLSLFLQHSLLQVTI 222


>gi|260892678|ref|YP_003238775.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
 gi|260864819|gb|ACX51925.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
          Length = 297

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 45/134 (33%), Gaps = 5/134 (3%)

Query: 24  VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG---LSLSESISRMVRYMPLQE 80
              V AGL    A+         P+  E +R +E           +  +  +   + + E
Sbjct: 162 AVGVAAGLTPWAALKEAAQGGDGPLYREVKRALEEGEAQARSGPRTAVLGALAEELGVPE 221

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
            S F+ ++    +        ++ +   +R  + ++      + +   S  ++  L    
Sbjct: 222 FSSFAELVCQAIEY--GAEGFVSAIEDAVRHMREVRRAKLEAAAQKAQSKMLVPLLVLVG 279

Query: 141 STLVYFTSPGYMNV 154
           + + +   P +  V
Sbjct: 280 AMMCFLLGPLFARV 293


>gi|104781569|ref|YP_608067.1| type II secretion pathway protein F [Pseudomonas entomophila L48]
 gi|95110556|emb|CAK15264.1| putative type II secretion pathway protein F [Pseudomonas
           entomophila L48]
          Length = 396

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 11/165 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   + AGLP+ DA+  +  ++S    R     ++   + G SLS++++R  
Sbjct: 59  DLVLFSQELATLLNAGLPLIDALESLAEKASAGTPRKTLELLVRQLYEGRSLSQALARQP 118

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           +  P          +   S+  G L +ALA      +    ++ K+   S+       + 
Sbjct: 119 QVFP-----SLYVALVQSSERTGALGDALARYIGYRQRLDLVRQKLVGASVYPLLLLLVG 173

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           G +   +   V          +     G  L  ++   M IG+ +
Sbjct: 174 GGVVLFLLGYVVPRFSLVFEGM-----GTELPWLSRVLMQIGLFL 213


>gi|313902412|ref|ZP_07835815.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
           13965]
 gi|313467343|gb|EFR62854.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
           13965]
          Length = 300

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 38/120 (31%), Gaps = 1/120 (0%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P  L+ I  + R GL +  ++ V       P+  + R        G  L + +  + + 
Sbjct: 159 LPGWLEDIALAARGGLSLRQSIEVANDVGEGPLVDDARDAFARIRAGQPLRQPLLELAQL 218

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P  EV+     +      G  L + L    R++R     +   +           I   
Sbjct: 219 YPHPEVTVALRTLVEAEVRGLPLPQTLDEHVRLMRALLA-RRWQRQADSLPFWLTVITMG 277


>gi|295677744|ref|YP_003606268.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1002]
 gi|295437587|gb|ADG16757.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1002]
          Length = 412

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 49/152 (32%), Gaps = 1/152 (0%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   +RAGLP++ A+ ++    +   R    R++ T    ++ +            
Sbjct: 75  FTRQLSSLLRAGLPLAPALELLAQTPTSGQRQGMPRIVGTVARDIT-AGLRFSAALQRHP 133

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
            + +     +    +  G L   L+ L+         +AKV+A      A   +  ++  
Sbjct: 134 AQFNPLYCQLVEVGEAAGALVTVLSRLADDRERAAAQRAKVRAALTYPVAILLLAIAITA 193

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
            +   V  T     +             +A +
Sbjct: 194 ALLVWVVPTFKQIFDGFGAKLPAPTQFVLALS 225


>gi|251793168|ref|YP_003007896.1| PilC [Aggregatibacter aphrophilus NJ8700]
 gi|247534563|gb|ACS97809.1| PilC [Aggregatibacter aphrophilus NJ8700]
          Length = 412

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/142 (9%), Positives = 56/142 (39%), Gaps = 1/142 (0%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISR 71
             +    L  +   ++A +P+ +++ +++   ++   + + R +++    GL+ S+++ +
Sbjct: 57  NAEVCALLSQLATLLQAAVPLKNSLQILLQHCTNIALNAWLRQLLKDIESGLAFSQALEK 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                  Q +++    +    ++ G L      +++  +    ++ K++ + +       
Sbjct: 117 QNVEKQNQYLTYQDRQLIKVGEMTGKLPTVCHEIAQHKQQALALQRKIRKILLYPVLVLG 176

Query: 132 IIGSLPFCVSTLVYFTSPGYMN 153
           I   L   +   +        +
Sbjct: 177 ISLILTALLLLFIVPQFAAMYD 198



 Score = 40.9 bits (94), Expect = 0.077,   Method: Composition-based stats.
 Identities = 16/137 (11%), Positives = 45/137 (32%), Gaps = 4/137 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR----VIETQHLGLSLSESISR 71
                  +   ++AG+P++ A+   + Q+    RS   +    +IE     L   +    
Sbjct: 269 LVGFSRSLFLMLQAGVPLNQALQSFLPQNPSWQRSPNVQGDWLLIEEVQSILHWLQQGYA 328

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
               +        +  +    +  G L + L  ++   + + + +  + +  +E      
Sbjct: 329 FSASVSSHIFPLAAQQMLQVGEQSGQLPKMLQFIANDHQQQLDYQIDLLSQMLEPLLMVI 388

Query: 132 IIGSLPFCVSTLVYFTS 148
           I G +   +  +     
Sbjct: 389 IGGLIGLIMLGMYLPIF 405


>gi|311107627|ref|YP_003980480.1| type II secretion system protein F domain-containing protein 3
           [Achromobacter xylosoxidans A8]
 gi|310762316|gb|ADP17765.1| bacterial type II secretion system protein F domain protein 3
           [Achromobacter xylosoxidans A8]
          Length = 331

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 56/129 (43%), Gaps = 5/129 (3%)

Query: 30  GLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           GL +  ++ V+V +       +  E R   E    G +  +S++R+       ++S    
Sbjct: 196 GLSIDQSLQVLVKEFGQVLPVLAFELRLASELYVRGRTREQSLARLAAGFDNDDLSAICR 255

Query: 87  VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
           +I+   Q GG + E L      LRD++ ++ K +      K +  +I +L   +  L+  
Sbjct: 256 LIAQVDQHGGAVQEPLNRFGERLRDKRRLELKEKVGKTTVKMTGVMIVTLLPAL--LIVT 313

Query: 147 TSPGYMNVL 155
              G++ VL
Sbjct: 314 GGAGFIAVL 322


>gi|56476087|ref|YP_157676.1| type II secretion system protein [Aromatoleum aromaticum EbN1]
 gi|56312130|emb|CAI06775.1| Bacterial type II secretion system protein [Aromatoleum aromaticum
           EbN1]
          Length = 392

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 53/141 (37%), Gaps = 6/141 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           ++  +RAG+P+++A++ +   +    VR+   ++      G SLS ++       P    
Sbjct: 63  MLALLRAGIPLAEAISALAEGEGRRAVRAVLLKLQGALREGRSLSNALESASEAFP---- 118

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F   +   ++   +L  AL       +  + ++ K+ + ++       + G +   + 
Sbjct: 119 -SFYIAMVRAAERTSDLDLALERYIAYQQQVETLRGKLVSAAIYPVLLLAVGGLVVLFLL 177

Query: 142 TLVYFTSPGYMNVLINDPRGH 162
             V          + +D    
Sbjct: 178 GYVVPRFSHIYADVGSDLPWL 198



 Score = 35.9 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 41/142 (28%), Gaps = 8/142 (5%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR   F          +   +  G+P   A+ ++ G  S  +R      IE    G + S
Sbjct: 252 KRLKVF--QLARFYRTLGMLLSGGIPAITALRMVAGLLSPGLRGSLELAIEGIREGRAFS 309

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +++              +  +    +  GNL E L   +    +    + +        
Sbjct: 310 ATLAAHGLTT------RVALRMLEVGERAGNLGEMLTRSAEFHENDTARQVEWLTRLFGP 363

Query: 127 KASAWIIGSLPFCVSTLVYFTS 148
                I  ++   V  +     
Sbjct: 364 LLMLIIGCAIGLIVVLMYLPIF 385


>gi|15601951|ref|NP_245023.1| HofC [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12720296|gb|AAK02170.1| HofC [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 380

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 44/138 (31%), Gaps = 3/138 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAV-IVGQSSDPVRSE--FRRVIETQHLGLSLSESIS 70
            +  +    +   + +G+P+  A+   +  Q S   + E    R+ E   L L       
Sbjct: 237 HELIHFCRHLHLMLSSGMPLQQALQTFLPTQKSGIAKHELTEMRLAEEVQLMLKGIAQGY 296

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           R    +        +  +    +  G LSE L  ++   + +   +  + +  +E     
Sbjct: 297 RFSEVIGSNLFPEMAQQMLHVGEQTGRLSEMLQYIAESYQQKLEHQLDLLSQLLEPCLML 356

Query: 131 WIIGSLPFCVSTLVYFTS 148
            I   +   +  +     
Sbjct: 357 VIGSIIGVILLGMYLPMF 374


>gi|154249950|ref|YP_001410775.1| type II secretion system protein [Fervidobacterium nodosum Rt17-B1]
 gi|154153886|gb|ABS61118.1| type II secretion system protein [Fervidobacterium nodosum Rt17-B1]
          Length = 403

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 14/158 (8%)

Query: 7   KRTAKFLDDFPN---ALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQHL 61
           K+ A F     +       +   + AG+ ++DAV  +  Q   S   R   + V      
Sbjct: 55  KKKAVFQAKLKDIVLFARQLETMISAGIRLADAVITLSEQEVFSKKFRIALKEVASDMKA 114

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+S S+++ R                +    + GG L   +  ++        ++ +V++
Sbjct: 115 GVSFSDALERQG------IFDSIFINMVKAGEEGGILDVTMKKVANYYESVNRLREQVKS 168

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159
                    +I+G     V  +  F  P  ++V    P
Sbjct: 169 SMAYPM---FILGFAVVVVIVISVFILPRLISVFGTVP 203



 Score = 42.0 bits (97), Expect = 0.041,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 50/145 (34%), Gaps = 9/145 (6%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGL 63
           I+K   K  ++       +   + +G+P+ +A+ +    S++P   S   +VIE    G 
Sbjct: 259 IRKLRQKMSNE--RFTRTLGVLIGSGVPMVNALDMAAKASNNPRFISIISKVIEEVKAGS 316

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           +L  ++ R                +    +  G L   +  ++    +      K     
Sbjct: 317 NLKGALKRAG------IFPQIVYEMVGTGEETGKLDVVMEKVADFYEEEILSDTKKLVSL 370

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTS 148
           +E    A++   + F   T+     
Sbjct: 371 IEPALIAFVGLFIAFIAFTMYSTIF 395


>gi|329123678|ref|ZP_08252238.1| type IV pilus assembly protein PilC [Haemophilus aegyptius ATCC
           11116]
 gi|327469877|gb|EGF15342.1| type IV pilus assembly protein PilC [Haemophilus aegyptius ATCC
           11116]
          Length = 405

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 67/174 (38%), Gaps = 9/174 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
             +    L+ +   +++ +P+ +++ ++    +   +     R++++   GL+ S++I +
Sbjct: 56  NSEISELLNQLATLLQSVIPLKNSLQILQQNCTQIMLNKWLERLLQSIESGLAFSQAIEQ 115

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +Y+  QE       +    ++ G LS     ++        ++ K+Q + +       
Sbjct: 116 QGKYLTQQE-----IQLIQVGEMTGKLSAVCKKIATHRSQSLALQRKLQKIMLYPSMVLG 170

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML---IGIMVMRLM 182
           I   L   +   +        +    +      + ++ +  L   IGI++   +
Sbjct: 171 ISLLLTLALLLFIVPQFAEMYSGNNAELPTITAILLSISNFLKQNIGILLFFAL 224



 Score = 38.2 bits (87), Expect = 0.57,   Method: Composition-based stats.
 Identities = 13/136 (9%), Positives = 44/136 (32%), Gaps = 3/136 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESIS--RM 72
             N    +   ++AG+P++ A+   + ++           +I  + +   L         
Sbjct: 263 LVNFSHSLQIMLQAGVPLNQALDSFLPRTQTWQTKTLVNDIILDKEVRSILQWVSQGYAF 322

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +        +  +    +  G L+  L +++   +++ N +  + +  +E      I
Sbjct: 323 SNSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIADNYQEKLNHQIDLLSQMLEPLMMVII 382

Query: 133 IGSLPFCVSTLVYFTS 148
              +   +  +     
Sbjct: 383 GSLIGIIMMGMYLPIF 398


>gi|330953057|gb|EGH53317.1| type II secretion system protein [Pseudomonas syringae Cit 7]
          Length = 294

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 63/149 (42%), Gaps = 5/149 (3%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSL 65
             + + +    + ++     +G+ V  A+ V+  +       +  E R V+     GL L
Sbjct: 142 QKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLVRVDSGLEL 201

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E + +    + + E+S    +++     GG   ++L  L +++ DR+  + +     + 
Sbjct: 202 GEELRKTAALLAVDELSDTCVILNQLIHQGGGALKSLLMLKQLIDDRRLTRLQEYISKLS 261

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           AK S  ++  L   +  ++    PG+M +
Sbjct: 262 AKMSVVMMVFLFPALLIVL--AGPGFMAI 288


>gi|209518478|ref|ZP_03267300.1| type II secretion system protein [Burkholderia sp. H160]
 gi|209501111|gb|EEA01145.1| type II secretion system protein [Burkholderia sp. H160]
          Length = 399

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 11/161 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+ V DA+  +   +  +     +  ++     G SLS ++    R  P
Sbjct: 66  FARELAALLDAGVGVIDALRTLSGNERREASAEVYGDLLRQLEEGHSLSAALEHASRVFP 125

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                         S+  G L+ +L   SR       ++ +V + ++       + G++ 
Sbjct: 126 P-----ILVACVKASEQTGGLAGSLTRYSRNSALLHELRGRVVSAAIYPSVLLLVGGAVV 180

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             +   V       +        G  L  ++   M  G MV
Sbjct: 181 LFLLGFVVPRFATLLEQ-----SGRELPLLSQLLMAWGGMV 216


>gi|17548370|ref|NP_521710.1| general secretion pathway GSPF-like transmembrane protein
           [Ralstonia solanacearum GMI1000]
 gi|17430616|emb|CAD17300.1| probable general secretion pathway gspf-related transmembrane
           protein [Ralstonia solanacearum GMI1000]
          Length = 395

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 6/136 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               ++  + AGL V +A+  +   +     RS    V+     G  LS +   M    P
Sbjct: 62  FSQELLTLLEAGLSVFEALETLHEKEKRPFSRSVLASVLARLSEGKPLSTAFGEMPELFP 121

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                   T I   ++   NL ++L+           ++AK+ + S+     A +  ++ 
Sbjct: 122 -----ALYTSIIRTAERTSNLPQSLSRYVEYQTRLDGVRAKIASASIYPMVLAVVGAAVM 176

Query: 138 FCVSTLVYFTSPGYMN 153
             +   V         
Sbjct: 177 LFLLGYVVPRFAVVYQ 192


>gi|227893242|ref|ZP_04011047.1| competence protein [Lactobacillus ultunensis DSM 16047]
 gi|227864925|gb|EEJ72346.1| competence protein [Lactobacillus ultunensis DSM 16047]
          Length = 333

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 63/173 (36%), Gaps = 14/173 (8%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            +     LD +  S+  G  + +++ ++            +++ +    G S S  + ++
Sbjct: 15  EEQLA-FLDYLKHSLDNGFSLINSIELM-PALWPKREELMQKLADQMKEGASFSTELVKL 72

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    S  +      +   GNL+E L  L+ + R ++    K+++          +
Sbjct: 73  -------VFSKTTVTQVNLALQQGNLTECLNQLATLNRLKQEQVKKLRSELSYPL---VL 122

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              +   +  +  F S  + +   ++  G +++      ++ GI     ++N 
Sbjct: 123 AIMMVILLVFMQSFVSTQFSS--TSEHSGDIVMLGLIVLVMTGIYFFVRIVNL 173


>gi|147920826|ref|YP_685368.1| putative type II secretion system protein, C-terminal fragment
           [uncultured methanogenic archaeon RC-I]
 gi|110620764|emb|CAJ36042.1| putative bacterial type II secretion system protein, C-terminal
           fragment [uncultured methanogenic archaeon RC-I]
          Length = 297

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 47/146 (32%), Gaps = 1/146 (0%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESISRMVRY 75
           P     +   + AG  +  A+  +   S   +  E  RV+         L+ ++  M   
Sbjct: 80  PELFYDLSEYIGAGGSIIKALKRVSAGSYGTMSDEMSRVLSEVEDEGLDLAAAMKAMAAR 139

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
           +    +S    VI        +L   L  ++   R   ++  + ++  + A    ++   
Sbjct: 140 VNNAYISRSVAVICEALTSSSDLEGILKMVAADGRLSMSLLKERRSGLLAAVVVMYLTTI 199

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRG 161
           +   V +L   +       L     G
Sbjct: 200 ILLLVVSLCITSLVPMSQQLKALSGG 225


>gi|307245742|ref|ZP_07527828.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307254714|ref|ZP_07536541.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259155|ref|ZP_07540885.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|37929070|gb|AAO64348.1| fimbrial biogenesis protein [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306853444|gb|EFM85663.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862240|gb|EFM94207.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866822|gb|EFM98680.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 400

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/176 (10%), Positives = 62/176 (35%), Gaps = 11/176 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71
            +     +  +   + A +P+  A+ +++  +       +   +      G ++S S+++
Sbjct: 57  SESITQVIKQLALLLNAAVPLKQALNMLLENTYHIRIYMWLNDLNRLIESGYTMSSSLTK 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +  Y+   E       +    +  G L E L N++      + +  K++ +      +  
Sbjct: 117 LNLYLAKSE-----IQLVRIGEQSGRLGEILQNIAVNRYQTEKLHKKIKKIMFYPVVTLI 171

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           I  +L   +   +    P ++ +     R   L  +      + + +   ++   +
Sbjct: 172 ISVALSLAMLLFIV---PQFIELY--SGREKPLPLITQMLFTLSLFLQHSLLQVTI 222


>gi|332797852|ref|YP_004459352.1| archaeal flagella assembly protein [Acidianus hospitalis W1]
 gi|332695587|gb|AEE95054.1| archaeal flagella assembly protein [Acidianus hospitalis W1]
          Length = 612

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/182 (10%), Positives = 57/182 (31%), Gaps = 2/182 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQ 59
           +   I+ R      +      +    +R+GL        +    +   + S    V +  
Sbjct: 120 LSQKIESRRIGVDAELSAFTSVFAIFLRSGLTPRLMFDRLSSSSAFHYINSITLYVSKRI 179

Query: 60  HLGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
                S+ +++    +  P + +  F        + G  +   +   ++ + D+  ++A 
Sbjct: 180 RYLGESVEDAMLHASQISPSKLLKDFFLAYVTAVRTGAPVINTIEAKAKDILDQLQLRAS 239

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           + A  +   A +++I      +   +         V        + +       L+ I+ 
Sbjct: 240 LAADRLSGIAESYVIWLSSGYIMFFLMMVLEAIFPVGGTSMIPLLGVLAVTVLPLVNIVF 299

Query: 179 MR 180
           + 
Sbjct: 300 IY 301



 Score = 37.8 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 42/134 (31%), Gaps = 5/134 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            +  I   +RAGLP    +  I               +     LG  L ++  +    + 
Sbjct: 393 FMRAIAEGLRAGLPPETIIKNIKDSKEMGKFGKILNEIYAYITLGYPLKDAFRKGAERIM 452

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA----KVQALSMEAKASAWII 133
                     ++   ++G    E + +++R +  +  +K     KV+ L +       + 
Sbjct: 453 DFTSKISLVSLADMMEIGSMTPETVESIARQIESQIKIKRDYESKVKILLVTPYMGVILS 512

Query: 134 GSLPFCVSTLVYFT 147
                 + + +   
Sbjct: 513 LIASVLLGSAILSL 526


>gi|307720366|ref|YP_003891506.1| Type II secretion system F domain-containing protein [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978459|gb|ADN08494.1| Type II secretion system F domain protein [Sulfurimonas
           autotrophica DSM 16294]
          Length = 412

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 64/161 (39%), Gaps = 9/161 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71
            +     LD I   + AGLP++  +A  V  Q+ + +++ F ++      G SL  S   
Sbjct: 71  TEKLIAILDQIAIMLDAGLPLNYVLAEAVKNQNDEMIKAIFTKINNDIEGGKSLYNSAIT 130

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
               +        +  +    +  G LSE++++L+ IL++  + + K Q  +        
Sbjct: 131 FKEQLGF-----ITLSMFKLGEETGRLSESVSHLTSILQNIIDNRKKFQKATRYPL---I 182

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
           II ++    S ++ F  P + +          L      ++
Sbjct: 183 IIFAMGIAFSVVIIFVVPQFKSFFQQSNMELPLPTQFLLWI 223



 Score = 36.3 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 5/139 (3%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
            A         + +    V AG+P+ +A+ +      +    E  +      +  S+ E 
Sbjct: 271 KATLNAMISRFMYVFQVLVDAGIPMLEALNIASDIIENSYLKEKIK-----RISTSIEEG 325

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
            S    +   +        +    ++GG L + L  +++I +DR +      A  +E   
Sbjct: 326 KSLYQGFEKTEVFENMIVEMIKAGEIGGGLDKMLNKITKIYKDRFDYIVDNIATLIEPIL 385

Query: 129 SAWIIGSLPFCVSTLVYFT 147
            A I G +      +    
Sbjct: 386 IAAIAGFVMVLALGIFLPM 404


>gi|227832052|ref|YP_002833759.1| hypothetical protein cauri_0222 [Corynebacterium aurimucosum ATCC
           700975]
 gi|227453068|gb|ACP31821.1| putative membrane protein [Corynebacterium aurimucosum ATCC 700975]
          Length = 249

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 56/169 (33%), Gaps = 3/169 (1%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
             +    I   +RAG   + A+        D      R  +        L+         
Sbjct: 80  LASYFGSIAAELRAGSTTASALRRGTDALPDFTPESLRTAL---STAAGLAAQGGSPAVA 136

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
           +   EV  F+ ++++  + G  L+  +      L   +    +  A     +A+A I+  
Sbjct: 137 LTAPEVKRFAALLTLSGRHGVALANLIEQAQSQLDTARRHAGETAASLQGPQATAVILAC 196

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           LP     +        +  L+    G +LL V  A +  G    RL++ 
Sbjct: 197 LPLAGILMGRAMGADSLGFLLGGGLGGVLLDVGVALVCAGFAWSRLILR 245


>gi|150026347|ref|YP_001297173.1| hypothetical protein FP2317 [Flavobacterium psychrophilum JIP02/86]
 gi|149772888|emb|CAL44372.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
          Length = 378

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/152 (8%), Positives = 42/152 (27%), Gaps = 8/152 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   ++AG+ + +A+ +I+         E  +      +          + +    
Sbjct: 45  FYQELAVLLKAGITIKEALTLIIESLKKKADKELIQTALDDVINGKPFSEALLVSKSFSE 104

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
            E            +  G  ++    L      +   K  + A          ++ +   
Sbjct: 105 YEYYS-----LKIGEETGTTAQVCHKLGVFYERKNEQKRIIIAALTYPA---IVLTTALL 156

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
            V  ++ +  P + ++   +     +L     
Sbjct: 157 VVIFMLSYVVPMFQDIFKQNNVELPMLTRIIV 188


>gi|171186313|ref|YP_001795232.1| type II secretion system protein [Thermoproteus neutrophilus
           V24Sta]
 gi|170935525|gb|ACB40786.1| type II secretion system protein [Thermoproteus neutrophilus
           V24Sta]
          Length = 248

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 54/146 (36%), Gaps = 2/146 (1%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESI 69
           +     P  L ++  +V AGL +  AV      +  P+    R V+    +G  ++ E++
Sbjct: 30  RLEGQIPQVLRVLSDAVSAGLSLRGAVESAAALALRPMADVLRHVLTLSEMGGLTVEEAL 89

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM-EAKA 128
            R+   +P      F+ +++  ++ G  L E L   +R        +  V +        
Sbjct: 90  WRVAGEIPSPNFRRFALIVTEATRSGAKLPEVLDVSARSFATVVEFRQSVASQLRPYVAL 149

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNV 154
              I+  L      L+Y   P    +
Sbjct: 150 YYAIVVVLAVLTDVLIYMLLPQLAQL 175


>gi|190574783|ref|YP_001972628.1| putative transmembrane type II secretion protein [Stenotrophomonas
           maltophilia K279a]
 gi|190012705|emb|CAQ46333.1| putative transmembrane type II secretion protein [Stenotrophomonas
           maltophilia K279a]
          Length = 311

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 57/147 (38%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           +   +K+R     ++ P  +D++      G  +  ++  +      +   +  E +    
Sbjct: 147 LSSWVKRRRRAVDNELPLLIDLLRLLQGVGFSMDQSLQTLGDKLRDALPVLGGELQEANV 206

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G + ++S+ R+       +++    +I      GG + E L   S  LR+++    
Sbjct: 207 AYTHGRTRAQSLRRLSEVYADDDLTSLMQLILQVHAHGGAVQEPLRQFSIRLREQRRNTL 266

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           K +   +  K +  ++ +L   +  ++
Sbjct: 267 KEKVGKLSVKMTVVMMLTLLPALMLVL 293


>gi|156935375|ref|YP_001439291.1| type IV pilin biogenesis protein [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156533629|gb|ABU78455.1| hypothetical protein ESA_03233 [Cronobacter sakazakii ATCC BAA-894]
          Length = 399

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/167 (10%), Positives = 58/167 (34%), Gaps = 6/167 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           A+  +   ++AG+ ++  + ++  Q      +++R ++      L    + S  +R  P 
Sbjct: 62  AIRQLAALLQAGVSLTQGLMMLASQHP---IAQWRALLGELAKQLGRGVAFSETLRQWP- 117

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                   ++    ++ G L      L++   D++ ++ +V            +   L  
Sbjct: 118 AVFPPLYILLMRTGEMTGKLDVCCQQLAQQQEDQQKLRKQVIKALRYPAFIFNVALLLTL 177

Query: 139 CVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMI 183
            ++  V                     ++ ++ A +    + + +++
Sbjct: 178 GMTCFVLPQFTAIYRSFNTPLPLVTRAVIALSEALIQHAALWLSVLV 224



 Score = 38.6 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 45/136 (33%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72
                   ++    RAG+P+  ++  +    +S   +    RV  +   GL   +++ + 
Sbjct: 260 QQLSQIYTVLSLMQRAGIPLLQSLGSVEETLASPLWQQAVGRVKASIAGGLPFWKALEQE 319

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    +     +    +  G+L   L  L+     + + +A+  A ++E      I
Sbjct: 320 S------VFTALCIQLVRTGEETGSLDLMLEKLAEWHLGQTSERAQTLAATLEPLMMMVI 373

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V  +     
Sbjct: 374 GLIVGTLVVAMYLPIF 389


>gi|322514592|ref|ZP_08067625.1| HofF protein [Actinobacillus ureae ATCC 25976]
 gi|322119531|gb|EFX91618.1| HofF protein [Actinobacillus ureae ATCC 25976]
          Length = 397

 Score = 45.5 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 52/161 (32%), Gaps = 6/161 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
           D+    L  +   + A +P   A+ +     ++  +      +  +   G S S S++++
Sbjct: 58  DEVTQFLAQLALLINASIPFKQALMMQQENCTNIKLYQWLLALNASISSGYSFSASLAKL 117

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             Y+  QE       +    +  G L   L N+++       +  KV+ ++        I
Sbjct: 118 NLYLSKQE-----IQLIRMGEQSGKLGVVLENIAKTRNQADKLAKKVRKITFYPLIVLVI 172

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
              L   +   +             +      L  + +  L
Sbjct: 173 SCVLTLGLLVFIVPQFADLYMDKAQNLPWLTSLLFSLSAFL 213


>gi|297619917|ref|YP_003708022.1| Type II secretion system F domain-containing protein [Methanococcus
           voltae A3]
 gi|297378894|gb|ADI37049.1| Type II secretion system F domain protein [Methanococcus voltae A3]
          Length = 294

 Score = 45.5 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 70/158 (44%), Gaps = 1/158 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLG 62
           L + +  KF  + P AL I+V S+ +G  V +++  I+     +   +  + ++      
Sbjct: 73  LYENKIDKFEKNLPKALYIMVLSLNSGRSVIESINEIINSDIKEVNIAFSKIILLMSERK 132

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           LS  +S+  +   +  +       +I    + GGNL+E+L  L++ L D  N+K ++ ++
Sbjct: 133 LSFEDSVLIVSNSLDSKLFKQLGRLIIENRKYGGNLAESLNTLAKTLEDLTNLKNQLLSV 192

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
           +    +   II  +    +  +  +    ++ + +   
Sbjct: 193 ASNGLSVGIIILCIMIPATAGLVGSFLNLISAISSTAT 230


>gi|307256931|ref|ZP_07538709.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307261363|ref|ZP_07543038.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306864665|gb|EFM96570.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306869094|gb|EFN00896.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 400

 Score = 45.5 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/176 (10%), Positives = 62/176 (35%), Gaps = 11/176 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71
            +     +  +   + A +P+  A+ +++  +       +   +      G ++S S+++
Sbjct: 57  SESITQVIKQLALLLNAAVPLKQALNMLLENTYHIRIYMWLNDLNRLIESGYTMSSSLTK 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +  Y+   E       +    +  G L E L N++      + +  K++ +      +  
Sbjct: 117 LNLYLAKSE-----IQLVRIGEQSGRLGEILQNIAVNRYQTEKLHKKIKKIMFYPVVTLI 171

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           I  +L   +   +    P ++ +     R   L  +      + + +   ++   +
Sbjct: 172 ISVALSLAMLLFIV---PQFIELY--SGREKPLPLITQMLFTLSLFLQHSLLQVTI 222


>gi|256826296|ref|YP_003150256.1| Flp pilus assembly protein TadC [Kytococcus sedentarius DSM 20547]
 gi|256689689|gb|ACV07491.1| Flp pilus assembly protein TadC [Kytococcus sedentarius DSM 20547]
          Length = 211

 Score = 45.5 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 54/146 (36%), Gaps = 7/146 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           DD    LD++  ++ +G  V+DA+ ++  +  +P+    R+V+  +  G++ +++   + 
Sbjct: 70  DDLAAVLDLMALALDSGCAVTDALELVADEVPEPLAGHLRQVVAARRWGVTGADAWKGLP 129

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                      +  +++    G   +E +   +  LR  +    +  A  +       + 
Sbjct: 130 SQWGP-----VAQALTLAQLAGAPPAETIRRAAADLRRDRRAALERAAARLPVFLVIPLG 184

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDP 159
                    ++    P  + +     
Sbjct: 185 TVFMPA--FVLIAVVPLVVALATQTL 208


>gi|315500686|ref|YP_004089487.1| Type II secretion system F domain protein [Asticcacaulis
           excentricus CB 48]
 gi|315418698|gb|ADU15336.1| Type II secretion system F domain protein [Asticcacaulis
           excentricus CB 48]
          Length = 390

 Score = 45.5 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/167 (9%), Positives = 48/167 (28%), Gaps = 13/167 (7%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            D    L  +   +R G  +  A+ ++  +      +  +           LS S     
Sbjct: 57  ADLEALLTNLSVLLRTGADIRTALGILDDEGKGLKAAAGKI----------LSGSTIEAA 106

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G+L   L   +++L  R+ ++ ++           ++ 
Sbjct: 107 LTPLFPAGQAHLGALIAAGEARGDLPSGLEAAAKVLAARRLIRQQLIEALSYPA---FVF 163

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +    ++ ++    P    +L    +   +      +M   +    
Sbjct: 164 VTAVAALTVILLVVVPAIAPLLDETGQSVPVYFQIIVWMSQALQWGW 210


>gi|307731055|ref|YP_003908279.1| type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1003]
 gi|307585590|gb|ADN58988.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1003]
          Length = 409

 Score = 45.5 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 51/166 (30%), Gaps = 8/166 (4%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLS 64
           R      +       +   +RAGLP++ A+ ++    +     +      +      GL 
Sbjct: 62  RAKASAAEVTLFTRQLASLLRAGLPLAPALDLLAQPQNARRAGMPRIVGTLARDITAGLR 121

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
            S ++ R          +     +    +  G L   LA ++         +AKV+A   
Sbjct: 122 FSAALQRHPAQ-----FNALYCQLVEVGEAAGALPAVLARIADDRERAAAQRAKVRAALT 176

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
              A   +  ++   +   V  T     +          L  +A +
Sbjct: 177 YPLAILLLALTITAALLVWVVPTFKQIFDGFGARLPAPTLFVLALS 222


>gi|226326047|ref|ZP_03801565.1| hypothetical protein COPCOM_03865 [Coprococcus comes ATCC 27758]
 gi|225205589|gb|EEG87943.1| hypothetical protein COPCOM_03865 [Coprococcus comes ATCC 27758]
          Length = 353

 Score = 45.5 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/147 (8%), Positives = 44/147 (29%), Gaps = 5/147 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           +  +    +   +++G+   + V ++   +      E    I    +     +      +
Sbjct: 17  EIASFCSEMAMILKSGISSLEGVDLLREDAQTKAEKELLDEIYQSVMDTGRLDQALEETK 76

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
             P      +   ++   +  G L E + +L+      + ++  V++          ++ 
Sbjct: 77  VFP-----EYLIRMTQIGEETGTLDEVMESLAEHYDREEAIRRSVRSAISYPLLMIGMML 131

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRG 161
            +   + T V             +  G
Sbjct: 132 VIIIILMTKVMPVFDQVFRQFGQEMTG 158


>gi|218883478|ref|YP_002427860.1| type II secretion system protein [Desulfurococcus kamchatkensis
           1221n]
 gi|218765094|gb|ACL10493.1| type II secretion system protein [Desulfurococcus kamchatkensis
           1221n]
          Length = 562

 Score = 45.5 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 58/176 (32%), Gaps = 2/176 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L   R  K +      L  +V   + GLP   ++  +  +         R+      
Sbjct: 339 IYYLYVSREYKVVRGITRFLRDLVEVRKTGLPPERSIIELSSRDYGVFTQYLRKAAMELS 398

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L   I  +++ +          +++   ++GG   E L NL+      + ++ + +
Sbjct: 399 IGVPLRRIIDELMKKIRSWTGQVLLFILTDSIEVGGGTVEVLENLAWFAESVEAIEDEKK 458

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLI 174
                     ++ G L       +          +       G +L  +    +++
Sbjct: 459 RSLRTLMIVPYMGGILSAVTVIYMVSYMAKLPVQVGAFGQAAGLVLPSIVLTGLVL 514



 Score = 35.9 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 65/181 (35%), Gaps = 6/181 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQH 60
           +   R +    +FP     +   V +GL    A   ++  S           R ++ ++ 
Sbjct: 66  IATSRASSIDGEFPFLSAYLSTMVMSGLSPYIAFERVLRGSIIFKRSSELAQRFILLSRV 125

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG     +   + + +    V    +      + GG++ + L   SR+L +   +  K+ 
Sbjct: 126 LGRDPLTAFDELSQRVASSRVKETLSGYIATVKAGGDVIDYLNKRSRLLFNEMLVGMKII 185

Query: 121 ALSMEAKASAWIIGSLPFCV-STLVYFTSPGYMN--VLINDPRGHMLLGVAAAFMLIGIM 177
           A  +     A++   L   +  T++YF + G+           G          +L G++
Sbjct: 186 ADRLGGLLEAYLAMVLLTMISFTVLYFVTTGFAGVVPFGLSSGGMYFFLYIVMPLLSGVI 245

Query: 178 V 178
           +
Sbjct: 246 I 246


>gi|304405042|ref|ZP_07386702.1| Type II secretion system F domain protein [Paenibacillus
           curdlanolyticus YK9]
 gi|304345921|gb|EFM11755.1| Type II secretion system F domain protein [Paenibacillus
           curdlanolyticus YK9]
          Length = 268

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 61/168 (36%), Gaps = 20/168 (11%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG------------------ 42
           +   +++R    +   P+ L  ++  V AG  V  A+                       
Sbjct: 97  VAQQMERRRQDMVLALPDVLGKLMLLVGAGETVQRAIIRCADGREDVTGSSINKGKKRKK 156

Query: 43  -QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS-TVISVQSQLGGNLSE 100
            +   P+  E+ R+I +   G S ++SI    R   +QE S F+  V+    + G     
Sbjct: 157 AKLEHPLHVEWTRMIRSLENGQSFAQSIEAFSRRCAVQEASMFATVVLLHYRKGGDRFVL 216

Query: 101 ALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
           AL  LS  L +++   A+++     +K    + G     +  +     
Sbjct: 217 ALKELSFSLWEKRKATARMRGEEASSKLVFPLAGIFFLLLIAVAAPAV 264


>gi|126459955|ref|YP_001056233.1| type II secretion system protein [Pyrobaculum calidifontis JCM
           11548]
 gi|126249676|gb|ABO08767.1| type II secretion system protein [Pyrobaculum calidifontis JCM
           11548]
          Length = 261

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 70/183 (38%), Gaps = 7/183 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHL 61
           HL+  R + F ++F   L +++    AG+P+   +A +   ++   +  EF  V     +
Sbjct: 69  HLVSARRSHFENNFVYTLAVMLPLFAAGVPLGRVIARLAEVEADKYIAREFALVTREVVV 128

Query: 62  GL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
              + +E++      +P Q       +++  S++   + E L      +   K +KA+  
Sbjct: 129 MGATPTEALLHSAERVPSQAYRETVNLLAKASRVTERVDEVLLARLEWMLRGKQVKAQSL 188

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV-----LINDPRGHMLLGVAAAFMLIG 175
             S+      +++ ++   +   +   +   +          DP   + L       L+G
Sbjct: 189 VRSLALLFEIYVVAAMLLPILVAILALALSPLGALEVAGFALDPVTLIALTGLIYSPLVG 248

Query: 176 IMV 178
            + 
Sbjct: 249 AVF 251


>gi|323466888|gb|ADX70575.1| Competence protein [Lactobacillus helveticus H10]
          Length = 353

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 69/185 (37%), Gaps = 16/185 (8%)

Query: 1   MKHLIKKRTAKF--LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           +K++   +  +    +     LD +  S+  G  + +++ ++        +   +++++ 
Sbjct: 21  LKYMSNSKKDRLNSEEQLV-FLDYLKHSLENGFSLINSIELMPVLWPKK-KELMQKLVKR 78

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G S S  + ++         S  +      +   GNL E L  L+ + R ++    K
Sbjct: 79  MKEGNSFSVELIQLG-------FSKTTVTQVNLALQQGNLIECLNQLAILSRLKQEQVKK 131

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           ++A        A ++  L   + + +            ++  G +++      +L GI  
Sbjct: 132 LRAELSYPFVLAIMMVILLVFMQSFISTQFND-----GSEYSGDLIMLGLIGAVLAGIYF 186

Query: 179 MRLMI 183
           +  +I
Sbjct: 187 LARII 191


>gi|229827059|ref|ZP_04453128.1| hypothetical protein GCWU000182_02443 [Abiotrophia defectiva ATCC
           49176]
 gi|229788677|gb|EEP24791.1| hypothetical protein GCWU000182_02443 [Abiotrophia defectiva ATCC
           49176]
          Length = 310

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 67/184 (36%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K    +   K  ++   AL II  S      +  AV   +   ++PV+  F+  +   +
Sbjct: 121 VKFSSGRIEKKISEELETALSIITNSYIRSENIILAVEENINYINEPVKGIFQSFLNECN 180

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                 +S    +R      V        +Q Q    L   L  + + L + + + A++ 
Sbjct: 181 YINPDIKSNLATLRGRLSDPVFVEYCNALIQCQNDITLKSTLYGIVKKLSNIRIVTARLD 240

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L        +++ ++        Y  +  +  ++ +   GH+++  +A  ++   + + 
Sbjct: 241 GLIYAPVKEFFMMVTIYLVNLPAFYLLNKEWYRIVTDTTTGHIMVATSAGIIVFAALNVL 300

Query: 181 LMIN 184
            +  
Sbjct: 301 RLTR 304


>gi|225026645|ref|ZP_03715837.1| hypothetical protein EUBHAL_00896 [Eubacterium hallii DSM 3353]
 gi|224956015|gb|EEG37224.1| hypothetical protein EUBHAL_00896 [Eubacterium hallii DSM 3353]
          Length = 191

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 56/128 (43%), Gaps = 7/128 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDA-------VAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
              F N L  ++ S++AG  ++++       +  +    ++P+  + RR+I+   L ++L
Sbjct: 46  EKGFQNLLQSMMTSLQAGYSLNNSCRIALKELEELYQDQNNPMLRQMRRIIQGLDLHIAL 105

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +          L+E   F+ VI +    GGN+ E L    + L+ + + + +++ L   
Sbjct: 106 EQLFMEFAESTGLEEAKQFAVVIEIVRSTGGNMVEILKRTMQHLKYKMDTEEEIRVLLSG 165

Query: 126 AKASAWII 133
                 + 
Sbjct: 166 KLFEKTLC 173


>gi|169834895|ref|YP_001715935.1| type II secretion system protein F [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169409002|gb|ACA57412.1| bacterial type II secretion system protein F domain [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 250

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 57/157 (36%), Gaps = 3/157 (1%)

Query: 1   MKHLIKKRTAKF--LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           +K  I K    F   ++ P  L+ +++ ++ G+PV   +  I         +     +  
Sbjct: 91  IKDPIDKYKESFLKDNELPAVLETLIQGLQIGMPVYSILLYISNNKKGNTANLINLCVTK 150

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK-NMKA 117
            + G+ +++++  +            + +I    +   NL + L  L + + + + N+K 
Sbjct: 151 VNSGMDINKALREVAEKSLNDYFLRMALIIEKTDRSVMNLDKQLEYLQQDMEEERINIKT 210

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +       A     +IG     +  ++         +
Sbjct: 211 EHADKLDNALFFPMLIGYFIPLIIMILVPLLRQMTKL 247


>gi|309972542|gb|ADO95743.1| Type II secretory pathway, component PilC [Haemophilus influenzae
           R2846]
          Length = 405

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/174 (11%), Positives = 67/174 (38%), Gaps = 9/174 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
             +    L+ +   +++ +P+ +++ ++    +   +     R++++   GL+ S++I +
Sbjct: 56  NSEISELLNQLATLLQSVIPLKNSLQILQQNCTQIMLNKWLERLLQSIESGLAFSQAIEQ 115

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +Y+  QE       +    ++ G L+     ++        ++ K+Q + +       
Sbjct: 116 QGKYLTQQE-----IQLIQVGEMTGKLAVVCKKIATHRSQSLALQRKLQKIMLYPSMVLG 170

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML---IGIMVMRLM 182
           I   L   +   +        +    +      + ++ +  L   IGI++   +
Sbjct: 171 ISLLLTLALLLFIVPQFAEMYSGNNAELPTITAILLSISNFLKQNIGILLFFAL 224



 Score = 38.2 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/136 (9%), Positives = 44/136 (32%), Gaps = 3/136 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESIS--RM 72
             N    +   ++AG+P++ A+   + ++           +I  + +   L         
Sbjct: 263 LVNFSHSLQIMLQAGVPLNQALDSFLPRTQTWQTKTLVNDIILDKEVRSILQWVSQGYAF 322

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +        +  +    +  G L+  L +++   +++ N +  + +  +E      I
Sbjct: 323 SDSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIADNYQEKLNHQIDLLSQMLEPLMMVII 382

Query: 133 IGSLPFCVSTLVYFTS 148
              +   +  +     
Sbjct: 383 GSLIGIIMMGMYLPIF 398


>gi|224372075|ref|YP_002606447.1| putative general secretion pathway protein F [Nautilia profundicola
           AmH]
 gi|223589253|gb|ACM92989.1| putative general secretion pathway protein F [Nautilia profundicola
           AmH]
          Length = 399

 Score = 45.1 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/184 (10%), Positives = 52/184 (28%), Gaps = 18/184 (9%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             +     + +   ++A +P+  A+ +   Q+ +       + ++     +   +S    
Sbjct: 57  RKELSKLFNSLGLYLKASIPLISAINLSKNQTDNSK---IIKFLDYIQNSIKEGKSFYAS 113

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           +       +  + T      +  G L   L  +S+ L+D + + +K     +       +
Sbjct: 114 LESQNFINLPKYVTSTVKIGEESGKLDIVLVEISKFLKDEEKISSKTSQALVYPMFIIIV 173

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRG---------------HMLLGVAAAFMLIGIM 177
              +   + T V          L  D                     + +       G  
Sbjct: 174 AVFMISFMLTTVVPKIVKVFENLHQDLPAITKIVINTGNFLQHSWQAILILFIVFAAGFR 233

Query: 178 VMRL 181
           +M  
Sbjct: 234 IMYK 237


>gi|297526958|ref|YP_003668982.1| Type II secretion system F domain protein [Staphylothermus
           hellenicus DSM 12710]
 gi|297255874|gb|ADI32083.1| Type II secretion system F domain protein [Staphylothermus
           hellenicus DSM 12710]
          Length = 591

 Score = 45.1 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 65/177 (36%), Gaps = 6/177 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE---FRRVIETQHLGLS 64
           R      +FP     +   V +GL    A   I   S    ++     R ++  + LG  
Sbjct: 97  RAGGIEGEFPYTTAYLSMMVMSGLSPYVAFERITHASKVFTKTAELSQRFILLVRVLGRD 156

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
              + S + +  P               + GG++++ L   +R+L     ++ K+ A  +
Sbjct: 157 PLTAFSMLAQRTPSPTARDLLMGYVTTVRAGGDVADYLNKKARLLFSELIVRMKIIADRL 216

Query: 125 EAKASAWIIGSLPFCV-STLVYFTSPGYMN--VLINDPRGHMLLGVAAAFMLIGIMV 178
                A++   L   +   ++YF +  +++       P    L+      M+ G+++
Sbjct: 217 AGLLEAYLALVLLSLISLAVMYFVTVSFVSAVPFGLSPASLFLVLYILIPMISGMII 273



 Score = 43.2 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/174 (11%), Positives = 54/174 (31%), Gaps = 8/174 (4%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  K +      L  +V   + GL    ++  +  ++        R++     LG+ LS 
Sbjct: 374 REYKVITGITRFLRDLVEIRKTGLSPERSIIELSRRNYGVFTKYLRKIALQLSLGIPLSR 433

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
            I  + + + +        V++   ++GG   E + +L+        ++ + +       
Sbjct: 434 IIQELFKKIIVWRAKVLLFVLTDTIEVGGGSVEIMEHLAWFAESVDAIEDEKKKNLRTLL 493

Query: 128 ASAWIIGSLPFCVSTLVYFT--------SPGYMNVLINDPRGHMLLGVAAAFML 173
              ++ G L      ++              Y+          ++       + 
Sbjct: 494 IVPYMGGILTAATVIMLAVFMGSLQFGAGGSYIQAASTTLPAIVINTYLMGLVA 547


>gi|291455823|ref|ZP_06595213.1| conserved hypothetical protein [Bifidobacterium breve DSM 20213]
 gi|291382751|gb|EFE90269.1| conserved hypothetical protein [Bifidobacterium breve DSM 20213]
          Length = 155

 Score = 45.1 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 51/158 (32%), Gaps = 5/158 (3%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           +  G  + +A      Q         RR+   +   L     +    R   ++     + 
Sbjct: 1   MAGGGTLVEAFE---EQFGGRF--AVRRLTPQRLTDLFERRRLPDESRAQSVRAAMGAAA 55

Query: 87  VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
             +V  +LG      L  +  +    + M+          +A+  ++ +LP     L   
Sbjct: 56  AATVSEELGCRAVPCLEAVLDVYSHMRLMQNMRAQAFAVPQATVGLLSALPAIAVVLGEL 115

Query: 147 TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                +  L    RG + L       ++G++ MR ++ 
Sbjct: 116 MGAHPLLFLFGSQRGLVCLVSGGCCYVVGLVWMRALMR 153


>gi|305664070|ref|YP_003860358.1| Type II secretion system F domain [Ignisphaera aggregans DSM 17230]
 gi|304378639|gb|ADM28478.1| Type II secretion system F domain [Ignisphaera aggregans DSM 17230]
          Length = 596

 Score = 45.1 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/151 (11%), Positives = 48/151 (31%), Gaps = 2/151 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHL 61
           +I  R      + P  +  +    R G  +   +  +      S       R V   +  
Sbjct: 117 MISNRKNSVESELPFFMAYVSTMARGGYSLEKLIERVSQLKIFSGIRLEAQRIVTHMKMF 176

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G     ++ R+    P           +   + GG++   L   +R + + +  + +   
Sbjct: 177 GEDPITALDRVAMNHPSTRFRDVMLGYTTTLRSGGDVVHYLETRTREVFESRMNEIRALF 236

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
             + +    + +  +   ++  ++F   G +
Sbjct: 237 GRLASYLEVYTVFGVIMAIAVFIFFAVSGAL 267



 Score = 35.1 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 60/165 (36%), Gaps = 5/165 (3%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
            + L  +    + GL     + ++  ++   +     R      +GLSL E++ + +R +
Sbjct: 397 ADFLRDLSEIRKTGLSPEKCIILLSARNYKNLTPVVSRAGAALSIGLSLEEALRKALRGV 456

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRI----LRDRKNMKAKVQALSMEAKASAWI 132
                      ++    +GG   E +  L+R         +  + ++++        + +
Sbjct: 457 KEWFTIASFRFLTDSILVGGGSPEVIDTLARFTETLSELEEETRRRMRSQVFLPYFGSAM 516

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           + S+P  +   +  +        +      + LG A    L+GI+
Sbjct: 517 LSSMPIIIL-YMLLSIANIKLTAVAPLILILSLGAAINSFLMGII 560


>gi|158320934|ref|YP_001513441.1| hypothetical protein Clos_1905 [Alkaliphilus oremlandii OhILAs]
 gi|158141133|gb|ABW19445.1| hypothetical protein Clos_1905 [Alkaliphilus oremlandii OhILAs]
          Length = 281

 Score = 45.1 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 54/153 (35%), Gaps = 1/153 (0%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
              K R  K   +  N  D++    + G      +      + DP++     +     + 
Sbjct: 125 KKAKDRKNKIRLELCNIQDVMYFQNKIGTSEDIILTYAAEIAKDPLKEPLEYLAAAPKIK 184

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S+ +S+  + +   + E+    + I  Q Q  G+++E     S++++  K ++ K++  
Sbjct: 185 KSVEDSLENLRKVSDVVELQS-FSFILQQRQETGSVAENHKAQSQMMKRNKRLRRKIKRQ 243

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
               K     +      +  L        +  L
Sbjct: 244 YKRTKLIVASLMLFTCYILLLTVPLFAEALRSL 276


>gi|322368727|ref|ZP_08043294.1| flagellar assembly protein J [Haladaptatus paucihalophilus DX253]
 gi|320551458|gb|EFW93105.1| flagellar assembly protein J [Haladaptatus paucihalophilus DX253]
          Length = 576

 Score = 45.1 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 62/180 (34%), Gaps = 4/180 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           K L  +R  +  D     +  +     A +       ++  ++    +  E +R+++   
Sbjct: 84  KLLRDRRRKQIEDRLHLFITHMTVLSTANMDRVQVFRILSEEAEYKELALEMQRIVQLVD 143

Query: 61  -LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
               SL +++    + +P + +S F   ++     GG + + L +   ++        + 
Sbjct: 144 TWNQSLDDALQIRAKKVPSKPLSDFFDRLAYTIGSGGEIQDFLLSEQDVVIQNYVTIYEG 203

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
              ++E     ++   L    + +     P           G +++  A   M  G + M
Sbjct: 204 SLRNLEVMKDLYLSMILSVTFALVFATVLPILTGTNPTMTVGAVVVMFAFVQM--GFLFM 261


>gi|237738597|ref|ZP_04569078.1| general secretion pathway protein F [Fusobacterium sp. 2_1_31]
 gi|229424080|gb|EEO39127.1| general secretion pathway protein F [Fusobacterium sp. 2_1_31]
          Length = 345

 Score = 45.1 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 63/155 (40%), Gaps = 7/155 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
             + +   +++GL  + A+ +I+ +  +        +++  H  L++ ++I    +    
Sbjct: 11  FTNELALLIKSGLTFTKAIEIILKEEKNKKFK---DILKKIHKNLTMGKNIYDSFKPFEN 67

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
              S +  ++ +    G N+ E+L ++S+ L    + + K+  + +       ++     
Sbjct: 68  TFGSTYLYILKIGELSG-NIVESLEDISKSLDFDLSQRKKLGGILIYPI---VVVCLTFL 123

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
            VS L+ F  P ++ +   +     L+      + 
Sbjct: 124 IVSFLLIFILPSFITIFEENQIELPLVTRILLGIS 158


>gi|149177767|ref|ZP_01856367.1| type IV pilus assembly protein PilC [Planctomyces maris DSM 8797]
 gi|148843417|gb|EDL57780.1| type IV pilus assembly protein PilC [Planctomyces maris DSM 8797]
          Length = 411

 Score = 45.1 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 41/159 (25%), Gaps = 8/159 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           D +    RA LP+S  +  +  +     +RS  + +      G  L   ++         
Sbjct: 75  DHLSDLTRARLPLSTGLEAVSYEIESPRLRSAVQNLASQLDAGNDLETVLADSRA----- 129

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                   +       G +SE LA+     R    MK ++                +   
Sbjct: 130 --PRELCALVHAGTRSGKMSEILADYVAHTRQISEMKNQLLMALSYPLILMAFAMLMFLS 187

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +   +             +  G  L     +  L     
Sbjct: 188 IMLWILPAFESIYREFGIELPGMTLRLFELSLFLRTQWW 226


>gi|297587794|ref|ZP_06946438.1| pilin biogenesis protein [Finegoldia magna ATCC 53516]
 gi|297574483|gb|EFH93203.1| pilin biogenesis protein [Finegoldia magna ATCC 53516]
          Length = 363

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 58/159 (36%), Gaps = 10/159 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            L      + A +P+ + + ++  Q     ++    +V E  + G+S+SES +       
Sbjct: 29  FLRQFSILLNAKIPIIEIINLLKEQKEFKQLKPSLDKVSENLNNGMSVSESFAN------ 82

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +    F T +    +  G L + + +LS+      ++  KVQ   +       +  +  
Sbjct: 83  DKNFDMFFTSMIKLGEESGRLDKVVYDLSKYYERTYDINKKVQNAMIYPI---ILTVTGI 139

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
             +  ++    P ++++  +      L       +   I
Sbjct: 140 VMLIFMLKNVIPTFVDLFESSDMVLPLSTRILISVSTAI 178


>gi|169823948|ref|YP_001691559.1| putative pilin biogenesis protein [Finegoldia magna ATCC 29328]
 gi|167830753|dbj|BAG07669.1| putative pilin biogenesis protein [Finegoldia magna ATCC 29328]
          Length = 363

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 56/156 (35%), Gaps = 10/156 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            L      + A +P+ + + ++  Q     ++    +V E  + GLS+SES         
Sbjct: 29  FLRQFSILLNAKIPIIEIINLLKEQKEFKQLKPSLDKVSENLNNGLSVSESF------CG 82

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +    F T +    +  G L + + +LS+      ++  K+Q   +       +  +  
Sbjct: 83  DKNFDMFFTSMMKLGEESGRLDKVVYDLSKYYERTYDINKKIQNAMIYPI---ILTVTGI 139

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             +  ++    P ++++  +      L       + 
Sbjct: 140 VMLIFMLKNVIPTFVDLFESSDMVLPLSTRILISVS 175


>gi|119715779|ref|YP_922744.1| type II secretion system protein [Nocardioides sp. JS614]
 gi|119536440|gb|ABL81057.1| type II secretion system protein [Nocardioides sp. JS614]
          Length = 300

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 59/154 (38%), Gaps = 1/154 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR A+F       LD++  S++AG   S+A+       +    +  +  I+   
Sbjct: 146 LMDKAKKRRAEFRRTLSVYLDLVAMSMQAGRGHSEALPASAAIGTGWAFTHLQDAIDGAR 205

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
               +   ++ ++     ++E++   + +++ ++ G  +   L   +  LR  +   A+ 
Sbjct: 206 FSGTTPWHALGQLGDRFGIRELTDLDSALTLANEDGAKVRATLVARAETLRAERIADAEA 265

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153
            A          +I  +   ++  +Y +      
Sbjct: 266 AAAQATESMRFALIVMVFAFLTYELYPSVARLFA 299


>gi|223986753|ref|ZP_03636738.1| hypothetical protein HOLDEFILI_04061 [Holdemania filiformis DSM
           12042]
 gi|223961274|gb|EEF65801.1| hypothetical protein HOLDEFILI_04061 [Holdemania filiformis DSM
           12042]
          Length = 344

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 54/162 (33%), Gaps = 12/162 (7%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + +GL   D + V+     D  +     ++     LG +L++S+ R      
Sbjct: 12  LCQQLSMMISSGLSAEDGLGVVANDQPDAGLHDALLKIKNEMELGETLADSLER------ 65

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +    +   +    +  G L + L  L++  +  + ++  ++           ++  + 
Sbjct: 66  TEAFDAYMIRMVRIGEQTGYLDQVLDALAQYYQRMEKIRINLKNALTYPLILLIMVMVVV 125

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             +   V       +  L     G  L   A   M  G +++
Sbjct: 126 GVILFKVLPVFDEVLRNL-----GVSLTVPAQVLMQAGTVLI 162


>gi|303234414|ref|ZP_07321053.1| type II secretion system F domain protein [Finegoldia magna
           BVS033A4]
 gi|302494530|gb|EFL54297.1| type II secretion system F domain protein [Finegoldia magna
           BVS033A4]
          Length = 363

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 56/156 (35%), Gaps = 10/156 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            L      + A +P+ + + ++  Q     ++    +V E  + GLS+SES         
Sbjct: 29  FLRQFSILLNAKIPIIEIINLLKEQKEFKQLKPSLDKVSENLNNGLSVSESF------CG 82

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +    F T +    +  G L + + +LS+      ++  K+Q   +       +  +  
Sbjct: 83  NKNFDMFFTSMMKLGEESGRLDKVVYDLSKYYERTYDINKKIQNAMIYPI---ILTVTGI 139

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             +  ++    P ++++  +      L       + 
Sbjct: 140 VMLIFMLKNVIPTFVDLFESSDMVLPLSTRILISVS 175


>gi|308235609|ref|ZP_07666346.1| hypothetical protein GvagA14_05194 [Gardnerella vaginalis ATCC
           14018]
          Length = 212

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 51/128 (39%)

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
              +   +LS      VR    +      +V  + S +G ++++ +  +S      K + 
Sbjct: 71  RCSNRIKNLSARQRSKVRKDMRKVAQSLMSVYELSSSIGCSMTDCVQAVSDSYHANKRVN 130

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
                +    KA+  ++ +LPF             + ++    RG+ LLG+   F +IG+
Sbjct: 131 DLSSEVFAMPKATIRLLTALPFLALLTGQLLGVNPILMIFTSSRGYALLGIGLLFYVIGL 190

Query: 177 MVMRLMIN 184
           + +  ++ 
Sbjct: 191 LWVTWIMK 198


>gi|262200534|ref|YP_003271742.1| type II secretion system F domain-containing protein [Gordonia
           bronchialis DSM 43247]
 gi|262083881|gb|ACY19849.1| Type II secretion system F domain protein [Gordonia bronchialis DSM
           43247]
          Length = 264

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 60/184 (32%), Gaps = 9/184 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-----RRVIETQ 59
             +R          AL +++  +  G P + A  V V +                +    
Sbjct: 79  ADRRIDDMTR----ALSMMISELSVGTPPNRAAQVAVVELRRRGGDCQVADGLEGMACRA 134

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            LG ++ ++  +                     + G  +++ L  L   L  R+    + 
Sbjct: 135 ELGGAVIDAAEKWDATWGPVSWQRIGVAWQTAERHGLPMADLLGALRSDLLARRAFVDRT 194

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +A     +A+A ++  LP     L   T    + VL+    G +LL +  +    G++  
Sbjct: 195 RAGLAGPRATALVLAGLPVLGIALGQATGARPLGVLLGGGIGGLLLVIGTSLAATGLVWT 254

Query: 180 RLMI 183
             + 
Sbjct: 255 ERLT 258


>gi|220913901|ref|YP_002489210.1| hypothetical protein Achl_3160 [Arthrobacter chlorophenolicus A6]
 gi|219860779|gb|ACL41121.1| conserved hypothetical protein [Arthrobacter chlorophenolicus A6]
          Length = 271

 Score = 44.7 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 35/103 (33%)

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
            S  +    +    G  L++ L   +  L    +  A  Q      KA+  ++  LP   
Sbjct: 160 WSELAACFDIAEASGCPLADVLTRFAAQLEVESDADAARQTALAGPKATVTLLTWLPLMG 219

Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             L        + +L+  P G   L   AA  + G +    ++
Sbjct: 220 LGLGMALGVDPLAMLLGTPLGLAALLGGAALTVAGRLWSARLV 262


>gi|119963307|ref|YP_949041.1| type II secretion system protein F [Arthrobacter aurescens TC1]
 gi|119950166|gb|ABM09077.1| putative bacterial type II secretion system protein F domain
           [Arthrobacter aurescens TC1]
          Length = 305

 Score = 44.7 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 46/137 (33%), Gaps = 7/137 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L+++   + AG  +  A+ +I   +S P+R   R V+    +G     +          
Sbjct: 170 MLELVASMLDAGAGIGRALELIAKCASPPIRQSLRPVVAALAIGADWETAWRT--PTRQP 227

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME-----AKASAWII 133
            EV      ++  +  G   +  L   +   R  +   A+ +A ++            + 
Sbjct: 228 PEVVRLKDALAFAALTGAPSASILYAQAARERREQFRAAEKRAAALGVKLVVPLGLCSLP 287

Query: 134 GSLPFCVSTLVYFTSPG 150
             +   +  ++    P 
Sbjct: 288 AFICLGIVPVLIAMLPS 304


>gi|306835046|ref|ZP_07468091.1| membrane protein [Corynebacterium accolens ATCC 49726]
 gi|304569071|gb|EFM44591.1| membrane protein [Corynebacterium accolens ATCC 49726]
          Length = 259

 Score = 44.7 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 59/182 (32%), Gaps = 1/182 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           +  +   +  +       ++   +RAG  ++ A++            +    +E+    +
Sbjct: 74  MAARTRRRGREALAGYFGVVTADLRAGATLASALSRGAESLPATTPRDMSAALESTATAV 133

Query: 64  SL-SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +  +     +       E++    ++ + +Q G  ++         +   +       A 
Sbjct: 134 ARGAPPHVALSGAHADAELTRLGHLLELSTQHGIGVASLFEQAQSRMDALRRHHQSTAAG 193

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
               +A+A ++  LP     +        +  L+    G +LL +       G    R++
Sbjct: 194 LQGPQATATVLACLPIAGIAMGGAMGANSLGFLLGGGLGGILLVIGVGLACGGFAWSRVI 253

Query: 183 IN 184
           I 
Sbjct: 254 IR 255


>gi|311113937|ref|YP_003985158.1| hypothetical protein HMPREF0421_20049 [Gardnerella vaginalis ATCC
           14019]
 gi|310945431|gb|ADP38135.1| hypothetical protein HMPREF0421_20049 [Gardnerella vaginalis ATCC
           14019]
          Length = 222

 Score = 44.7 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 51/128 (39%)

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
              +   +LS      VR    +      +V  + S +G ++++ +  +S      K + 
Sbjct: 81  RCSNRIKNLSARQRSKVRKDMRKVAQSLMSVYELSSSIGCSMTDCVQAVSDSYHANKRVN 140

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
                +    KA+  ++ +LPF             + ++    RG+ LLG+   F +IG+
Sbjct: 141 DLSSEVFAMPKATIRLLTALPFLALLTGQLLGVNPILMIFTSSRGYALLGIGLLFYVIGL 200

Query: 177 MVMRLMIN 184
           + +  ++ 
Sbjct: 201 LWVTWIMK 208


>gi|223940800|ref|ZP_03632633.1| type II secretion system protein [bacterium Ellin514]
 gi|223890530|gb|EEF57058.1| type II secretion system protein [bacterium Ellin514]
          Length = 328

 Score = 44.7 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 58/154 (37%), Gaps = 8/154 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
           D+F      +   +R G+P+  A+  +     D  +++E + +      GLSL +++   
Sbjct: 4   DEFAFFNQQLAAMLREGIPLEGALHRLSADMRDKRLQTEIQLLEGDLRNGLSLRDALKA- 62

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 +++  F   + +    G +L   L  ++   +    +  +++ L +        
Sbjct: 63  ------RKLPDFYVQMLMVGVNGNDLLGVLLLVADYYQRANTIWTRLKGLLVYPLIVLIA 116

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
             +L   ++ L  +      + L   P   M++ 
Sbjct: 117 AFALSTFITILGTWLIGSDNSGLFQTPIPPMIMI 150


>gi|257464504|ref|ZP_05628875.1| pili/fimbriae biogenesis protein [Actinobacillus minor 202]
 gi|257450164|gb|EEV24207.1| pili/fimbriae biogenesis protein [Actinobacillus minor 202]
          Length = 398

 Score = 44.7 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 66/183 (36%), Gaps = 17/183 (9%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLSESISR 71
            ++    L  +   V+A +P+  A+A+I+   +      +   +     LG + S ++ +
Sbjct: 57  SEEITQVLSQLAMLVKAKIPLKSALAMILENCTQIKIYLWLEALIKWIELGYAFSMALEK 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +Y+P QE       +    ++ G L   L N+++  ++++    KV+ +         
Sbjct: 117 SEKYIPQQE-----IQLIKMGEISGKLETILQNIAKARKEKETTLKKVKKILFYPIVVLT 171

Query: 132 IIGSLPFCVSTLVYFTS-----------PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           I  SL   +   +               P    +L +             F  I IM++ 
Sbjct: 172 ISFSLSIGLLLFIVPQFAELYSAKEKSLPMITEILFSLSAFLQEYISEFIFFFIVIMLLF 231

Query: 181 LMI 183
             I
Sbjct: 232 RFI 234


>gi|284989192|ref|YP_003407746.1| Type II secretion system F domain-containing protein
           [Geodermatophilus obscurus DSM 43160]
 gi|284062437|gb|ADB73375.1| Type II secretion system F domain protein [Geodermatophilus
           obscurus DSM 43160]
          Length = 237

 Score = 44.7 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 53/146 (36%), Gaps = 6/146 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             D P A D++   + AGLPV  A+A +    + P+  E   V     LG +   + + +
Sbjct: 97  EADLPVACDLLAVCLEAGLPVGGALAAVAAALAGPLGPELTTVAGLYRLGAAPRRAWADV 156

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                  E++    V+    + G  +  AL +L+   R  +  +A            A +
Sbjct: 157 PA-----ELAVLGRVLVRAGESGSTVVPALRSLAGDARAEQRSRADAAVRRAGVWVLAPL 211

Query: 133 -IGSLPFCVSTLVYFTSPGYMNVLIN 157
            +  LP  +   V     G    +  
Sbjct: 212 GVCFLPAFLCLGVVPLVLGIAADVFG 237


>gi|154482609|ref|ZP_02025057.1| hypothetical protein EUBVEN_00276 [Eubacterium ventriosum ATCC
           27560]
 gi|149736509|gb|EDM52395.1| hypothetical protein EUBVEN_00276 [Eubacterium ventriosum ATCC
           27560]
          Length = 478

 Score = 44.7 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 18/163 (11%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS---------- 50
           +K  +KKR  +   D+P  L  I+    AGL +  ++  IV Q  D  +           
Sbjct: 315 LKSEVKKRNIQLQFDYPEILSKILLYSNAGLSIKSSIERIVRQYEDEKKKNPKEYHYAYE 374

Query: 51  EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-----LSEALANL 105
           E +        G+S   +I++      L      + +I    + G       L   L   
Sbjct: 375 ELKMATVKMKSGVSEINAINQYGERCGLHNYIKLANIIEQNIRRGTGELSFALENELNR- 433

Query: 106 SRILRDRKNMKA--KVQALSMEAKASAWIIGSLPFCVSTLVYF 146
           + + R    +K   ++    +       I+  +   V  L+  
Sbjct: 434 ALVERKNTALKRGSEISTKLLGPMTVMLIVALVILMVPALMSI 476


>gi|170721966|ref|YP_001749654.1| type II secretion system protein [Pseudomonas putida W619]
 gi|169759969|gb|ACA73285.1| type II secretion system protein [Pseudomonas putida W619]
          Length = 396

 Score = 44.7 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 57/168 (33%), Gaps = 8/168 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65
           +R   F          +   + AGLP+ DA+  +  ++     R     ++   + G SL
Sbjct: 53  RRQVAFDLLL--FSQELTTLLHAGLPLIDALESLAEKAPTAATRKVLAALVGQLYEGRSL 110

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S+++++  R  P          +   S+  G L +AL       +    ++ K+   S+ 
Sbjct: 111 SQALAQQPRIFPP-----LYVALVQSSERTGALGDALHRYIGYRQRLDLVRQKLVGASVY 165

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
                 + G +   +   V          + ++      + +     L
Sbjct: 166 PLLLLLVGGGVVLFLLGYVVPRFSLVFEGMGSELPWLSRMLMQIGLFL 213


>gi|302559338|ref|ZP_07311680.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
 gi|302476956|gb|EFL40049.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
          Length = 368

 Score = 44.7 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 39/133 (29%), Gaps = 3/133 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
              P A D++   + AG     A   +      PV     R      LG   + +  R+ 
Sbjct: 222 RQLPLAADLLSACIAAGAGPVLAAQAVGETLGGPVGEALARGAAEVRLGGEPAAAWHRLA 281

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
               +   +  + ++      G  L+  +  L+   R      A  +A       SA + 
Sbjct: 282 ---SVPGAAALARLLERADVSGLPLAAPVGRLAAEARAEWTRAATARARRAAVMVSAPVG 338

Query: 134 GSLPFCVSTLVYF 146
                   T+   
Sbjct: 339 LCFLPAFITVGVV 351


>gi|254483289|ref|ZP_05096521.1| Bacterial type II secretion system protein F domain [marine gamma
           proteobacterium HTCC2148]
 gi|214036512|gb|EEB77187.1| Bacterial type II secretion system protein F domain [marine gamma
           proteobacterium HTCC2148]
          Length = 296

 Score = 44.7 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 54/139 (38%), Gaps = 1/139 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     +R+       P ALD+ V  +  G  + + +  I  Q+   +  E R  +    
Sbjct: 141 LDSNATQRSRLIYRRIPYALDLSVLVLETGGTLREGLEEISLQNDP-LAEELRITLLEMD 199

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G + + ++  M + + L+ +    T I+   + G  +   L   + + R+R+  + +  
Sbjct: 200 SGSTQAAALRGMGQRVGLESLETILTAINRGEETGAPMVATLITQAEMFRERRLQEIEKM 259

Query: 121 ALSMEAKASAWIIGSLPFC 139
           A+    K +   +  +   
Sbjct: 260 AVEAPTKMTFPNMMIMVSV 278


>gi|118586742|ref|ZP_01544179.1| comG operon protein 2 [Oenococcus oeni ATCC BAA-1163]
 gi|118432830|gb|EAV39559.1| comG operon protein 2 [Oenococcus oeni ATCC BAA-1163]
          Length = 379

 Score = 44.7 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/196 (9%), Positives = 57/196 (29%), Gaps = 23/196 (11%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57
           ++   K             L ++ + +++G  ++ A   +  I  +SS            
Sbjct: 42  LQKYTKSTKKLPRRQQVEFLSLLGQLIQSGYSINQATNFIQQISRESS------------ 89

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                L+L  +  +   +     ++         +   GNL + L  L+         + 
Sbjct: 90  -WVKNLNLELAKGKNFAFAIKPYLNNSLNFQIGMADRYGNLEKILLQLADFSEKCLKQEN 148

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY-----MNVLINDPRGHMLLGVAAAFM 172
           K++ +        +++  +   V   +      +     ++ +       +L  V    +
Sbjct: 149 KIKQILRYPLVLVFLLIGIAVAVKIFLLPILSSWSNQQRVDFVDEYFWFKVLGVVLMTLL 208

Query: 173 LIGIMV--MRLMINFD 186
            +       + M    
Sbjct: 209 FLFYRWQSFKKMSKLK 224


>gi|311697136|gb|ADQ00008.1| type II secretion system protein-like protein [marine bacterium
           HP15]
          Length = 290

 Score = 44.7 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/141 (11%), Positives = 52/141 (36%), Gaps = 5/141 (3%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL---SLSESISRMVR 74
               +    V AGL    ++ +I  Q+ + +    RR+     +       + ++  + +
Sbjct: 147 ELCQMTRMLVEAGLSPERSLKLISHQARELMPRLIRRIDRFNRVMESGADRTVALDELGK 206

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
              L  +  + +++     LG  ++  L  +    +  +    K +   + A+ +  ++ 
Sbjct: 207 NRNLTVLRNYVSLMKQSGTLGSKVAGGLDQIVEEAQHEERSNLKEETNKIGARMTVIMMV 266

Query: 135 SLPFCVSTLVYFTSPGYMNVL 155
            +   +  L+    P  + ++
Sbjct: 267 FMLPSLFLLIG--GPAVLAIM 285


>gi|262066832|ref|ZP_06026444.1| general secretion pathway protein F [Fusobacterium periodonticum
           ATCC 33693]
 gi|291379444|gb|EFE86962.1| general secretion pathway protein F [Fusobacterium periodonticum
           ATCC 33693]
          Length = 345

 Score = 44.7 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 63/155 (40%), Gaps = 7/155 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
             + +   +++GL  + A+ +I+ +  +        +++  H  L++ ++I    +    
Sbjct: 11  FTNELALLIKSGLTFTKAIEIILKEEKNKKFK---DILKKIHKNLTIGKNIYDSFKPFEN 67

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
              S +  ++ +    G N+ E+L ++S+ L    + + K+  + +       +I     
Sbjct: 68  TFGSTYLYILKIGELSG-NIVESLEDISKSLDFDLSRRKKLGGILIYPI---VVICLTFL 123

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
            VS L+ +  P ++ +   +     L+      + 
Sbjct: 124 IVSFLLIYILPSFITIFEENQIELPLVTRILLSIS 158


>gi|330962485|gb|EGH62745.1| general secretion pathway protein F [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 324

 Score = 44.7 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 61/151 (40%), Gaps = 11/151 (7%)

Query: 29  AGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87
           AG P+  A+A+   QS    + S    ++E    G SLS ++         +  S F   
Sbjct: 1   AGQPLESALALQARQSDRPAMASLLNGLLERVKGGSSLSVAMGA-----EHRTFSNFYLS 55

Query: 88  ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           +    +  G L E L+ L+  L   + M++ + +  +      +++  +   +  L+ + 
Sbjct: 56  LVRAGEAAGMLGETLSQLATNLERSRAMRSDLISALIYPA---FLVCGVFGSLVLLLTYV 112

Query: 148 SPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            P ++ +  +      L+      M +GI +
Sbjct: 113 VPQFVPIFRDLNVPLPLITECI--MALGIFL 141


>gi|167755633|ref|ZP_02427760.1| hypothetical protein CLORAM_01148 [Clostridium ramosum DSM 1402]
 gi|167704572|gb|EDS19151.1| hypothetical protein CLORAM_01148 [Clostridium ramosum DSM 1402]
          Length = 342

 Score = 44.7 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 48/142 (33%), Gaps = 7/142 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
             + +   + +G  ++  V ++  +  D       + V +     +S SE+I        
Sbjct: 11  FCNQMAMILESGFSLNQGVTMVYEEMDDKNIKGVLQEVAKYLDEQVSFSEAIDL------ 64

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +    +   +    +  GNL + + +LS       ++  K++           ++  + 
Sbjct: 65  TKAFDDYMVNLVKVGETSGNLDDVMQSLSEYYARIDDITNKLKQALTYPIILIIMMVVVV 124

Query: 138 FCVSTLVYFTSPGYMNVLINDP 159
             +   V       +N L +D 
Sbjct: 125 GIIVFKVLPIFKDVLNGLGSDL 146


>gi|300697013|ref|YP_003747674.1| type II secretion system protein F (gspF) [Ralstonia solanacearum
           CFBP2957]
 gi|299073737|emb|CBJ53258.1| putative type II secretion system protein F (gspF) [Ralstonia
           solanacearum CFBP2957]
          Length = 399

 Score = 44.3 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 72/188 (38%), Gaps = 15/188 (7%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            +K R  K           +   +RAGL VS+A+  +  +   P    +RR+ +    GL
Sbjct: 54  KLKSRRRKVDAGL--VCIELGGLLRAGLTVSEALDSLAHRDDHPNVDVYRRLYDGLLSGL 111

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            LSE++ ++    P              ++  G + +AL   ++  + ++ ++ KV + +
Sbjct: 112 PLSEAMKQVEGIFPG-----ILVAAIQANERSGRIPDALDEYAKYAQAQEALRKKVVSAA 166

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMN--VLINDPRGHMLLGVAAAF------MLIG 175
           +           +   +   V        +   +       +LL V          +L+G
Sbjct: 167 VYPATVIGFGLLVVLFLLAYVIPRFAMVYDGTAMQMSGPTRILLAVGHFIHEQGWGLLVG 226

Query: 176 IMVMRLMI 183
           I+++ +++
Sbjct: 227 IVLLGVIV 234


>gi|207723663|ref|YP_002254061.1| type II secretory pathway, gspf-related protein [Ralstonia
           solanacearum MolK2]
 gi|206588867|emb|CAQ35829.1| type II secretory pathway, gspf-related protein [Ralstonia
           solanacearum MolK2]
          Length = 400

 Score = 44.3 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 47/147 (31%), Gaps = 7/147 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + AG+ V DA+  +        R E   V+    L              +  
Sbjct: 67  FARELAALLDAGVSVIDALRTLG----SNERREASAVVYRDLLRRLEEGHALSQALALAD 122

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                        S+  G L+ +L   S      + ++ +V + S+       + GS+  
Sbjct: 123 DVFPPVLVACVKASEQTGGLAASLKRYSHNSAALQALRTRVVSASIYPAVLLAVGGSVAV 182

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLL 165
               L+ F  P +  +L +  R   LL
Sbjct: 183 ---FLLAFVVPRFAGLLEHSGRELPLL 206


>gi|325109358|ref|YP_004270426.1| type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324969626|gb|ADY60404.1| Type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 337

 Score = 44.3 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 49/166 (29%), Gaps = 7/166 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           +     D++  +VR   P+ DA+ +    +    R   + V++    G SLS +++    
Sbjct: 8   ELVEFNDMLAGTVRGNAPLPDAIRLAQEGAGRRQRELQQFVLDRLERGQSLSAALAERPD 67

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
               +        +    + G +L   L   SR L     ++  +    +       I  
Sbjct: 68  LFDPR-----YQQVVAAGEEGNHLGAVLEAFSRYLWQLIELRRSLSRALLYPLLVTCIGY 122

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L   V  +       +            +L          +  + 
Sbjct: 123 VLFVFVGGITTSRFVSFYRD--TPMPLTPVLSALNVVYSNILYWVW 166


>gi|224826461|ref|ZP_03699563.1| type II secretion system protein [Lutiella nitroferrum 2002]
 gi|224601562|gb|EEG07743.1| type II secretion system protein [Lutiella nitroferrum 2002]
          Length = 396

 Score = 44.3 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 47/147 (31%), Gaps = 6/147 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                   ++  + AGL + +A+  +   +     R    R+I+  + G +LS ++ +  
Sbjct: 59  QLLLFTQELLSLLEAGLALVEAIEALNEKEPRPESRRVLERLIQRLYEGQTLSVALQQFP 118

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
              P              S+  G+L +AL            ++ K+   S+       + 
Sbjct: 119 DIFPP-----LYLATVRASEKTGDLEDALGRYVAYQTQADLVRKKMINASIYPGLLVTVG 173

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR 160
             +   + + V          +  +  
Sbjct: 174 CLVLVFLLSYVVPRFAHVYEAMGTELP 200



 Score = 43.2 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/134 (11%), Positives = 39/134 (29%), Gaps = 6/134 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                  ++   +  G PV  A+ ++ G     +R +  +       G S+S ++S    
Sbjct: 262 QLARFYRMLGMLLTGGTPVVQALGMVSGLLQASLREQLLQAARDIREGRSISLAMSSNGL 321

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                     +  +    +  G +   +  ++    +      +      E    A+I  
Sbjct: 322 TT------SVALRMLRVGERTGQMGGMMERIASFYEEEMAQAVERFTRLFEPALMAFIGL 375

Query: 135 SLPFCVSTLVYFTS 148
            +   V  +     
Sbjct: 376 VIGGVVILMYLPIF 389


>gi|126208354|ref|YP_001053579.1| fimbrial biogenesis protein [Actinobacillus pleuropneumoniae L20]
 gi|126097146|gb|ABN73974.1| fimbrial biogenesis protein [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 400

 Score = 44.3 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/155 (11%), Positives = 56/155 (36%), Gaps = 9/155 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71
            +     +  +   + A +P+  A+ +++  +       +   +      G ++S S+++
Sbjct: 57  SESITQVIKQLALLLNAAVPLKQALNMLLENTYHIRIYMWLNDLNRLIESGYTMSSSLTK 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +  Y+   E       +    +  G L E L N++      + +  K++ +      +  
Sbjct: 117 LNLYLAKSE-----IQLVRIGEQSGRLGEILQNIAVNRHQTEKLHKKIKKIMFYPVVTLI 171

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
           I  +L   +   +    P ++ +     +   L+ 
Sbjct: 172 ISVALSLAMLLFIV---PQFIELYSGREKALPLIT 203


>gi|237734380|ref|ZP_04564861.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229382610|gb|EEO32701.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 342

 Score = 44.3 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 48/142 (33%), Gaps = 7/142 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
             + +   + +G  ++  V ++  +  D       + V +     +S SE+I        
Sbjct: 11  FCNQMAMILESGFSLNQGVTMVYEEMDDKNIKGVLQEVAKYLDEQVSFSEAIDL------ 64

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +    +   +    +  GNL + + +LS       ++  K++           ++  + 
Sbjct: 65  TKAFDDYMVNLVKVGETSGNLDDVMQSLSEYYARIDDITNKLKQALTYPIILIIMMVVVV 124

Query: 138 FCVSTLVYFTSPGYMNVLINDP 159
             +   V       +N L +D 
Sbjct: 125 GIIVFKVLPIFKDVLNGLGSDL 146


>gi|330815460|ref|YP_004359165.1| Type IV pilus biogenesis protein PilC [Burkholderia gladioli BSR3]
 gi|327367853|gb|AEA59209.1| Type IV pilus biogenesis protein PilC [Burkholderia gladioli BSR3]
          Length = 402

 Score = 44.3 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 49/166 (29%), Gaps = 8/166 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISR 71
             +       +   +RAGLP++ A+ ++        +      +      G  LSE++  
Sbjct: 62  SREITRFAQQLSGLLRAGLPLAPALDLLAEAGGRRDLGRIAAGLARAIGAGRQLSEAMRH 121

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             R             +    +  G L+  LA L+         +A+V+       A   
Sbjct: 122 YPRQFDP-----MFRQLIAVGEASGQLAPLLARLAEDRERGAAQRARVRGALAYPLAVLG 176

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIG 175
               +   +   V  T                  +L ++   M+ G
Sbjct: 177 FALLITVALLAWVVPTFAQVFEGFGATLPAPTRFVLALSDGLMVFG 222


>gi|315650392|ref|ZP_07903463.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315487319|gb|EFU77630.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 409

 Score = 44.3 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 48/132 (36%), Gaps = 11/132 (8%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----------PVRSE 51
           +  ++KR  + L D+P+ +  ++  + AGL V  +   IV                   E
Sbjct: 248 RQKLEKRKRELLKDYPDIVSKLIVFIGAGLSVRQSWEGIVKDYESENKEKRYAKRYAYEE 307

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANL-SRILR 110
             + +     G   +       R   L++    ++++    + G +    L N+ ++   
Sbjct: 308 MSKSLARLKTGTQENIVYKDFGRSCLLRQYMKLASLLEQNRKSGISGLSTLLNMEAQSAW 367

Query: 111 DRKNMKAKVQAL 122
           + +   AK +  
Sbjct: 368 EERLNLAKREGE 379


>gi|327392739|dbj|BAK10161.1| protein transport protein HofC [Pantoea ananatis AJ13355]
          Length = 399

 Score = 44.3 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/178 (10%), Positives = 49/178 (27%), Gaps = 11/178 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           M+    K   K      + +  +   ++AGLP+S +++++    S          ++   
Sbjct: 51  MRRRDWKWQHKI-----DLIRQLATLLKAGLPLSQSLSLLAEGHSQTPWRALMLALQ--- 102

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
               L+            Q        +    +L G L      L+     ++++++KV 
Sbjct: 103 -HQILAGEPFSSALRQWPQIFPPLYPALMEVGELTGQLDVCCEQLALQQTRQQHLRSKVI 161

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA--FMLIGI 176
                      +  ++   +   V                      +  +      G 
Sbjct: 162 KALRYPLFILAVALTVTCGMLLFVLPEFVSVYASFNAPLPAFTAAVIGLSERLQAWGF 219


>gi|303251262|ref|ZP_07337440.1| protein transport protein HofC-like protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307252505|ref|ZP_07534401.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302649804|gb|EFL79982.1| protein transport protein HofC-like protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860097|gb|EFM92114.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 400

 Score = 44.3 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/176 (10%), Positives = 61/176 (34%), Gaps = 11/176 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71
            +     +  +   + A +P+  A+ +++  +       +   +      G ++S S+++
Sbjct: 57  SESITQVIKQLALLLNAAVPLKQALNMLLENTYHIRIYMWLNDLNRLIESGYTMSSSLTK 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +  Y+   E       +    +  G L E L N++      + +  K++ +      +  
Sbjct: 117 LNLYLAKSE-----IQLVRIGEQSGRLGEILQNIAVNRHQTEKLHKKIKKIMFYPVVTLI 171

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           I  +L   +   +    P ++ +     R   L  +      +   +   ++   +
Sbjct: 172 ISVALSLAMLLFIV---PQFIELY--SGREKPLPLITQMLFTLSHFLQHSLLQVTI 222


>gi|165976299|ref|YP_001651892.1| protein transport protein HofC-like protein [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165876400|gb|ABY69448.1| protein transport protein HofC-like protein [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 400

 Score = 44.3 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/176 (10%), Positives = 61/176 (34%), Gaps = 11/176 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71
            +     +  +   + A +P+  A+ +++  +       +   +      G ++S S+++
Sbjct: 57  SESITQVIKQLALLLNAAVPLKQALNMLLENTYHIRIYMWLNDLNRLIESGYTMSSSLTK 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +  Y+   E       +    +  G L E L N++      + +  K++ +      +  
Sbjct: 117 LNLYLAKSE-----IQLVRIGEQSGRLGEILQNIAVNRHQTEKLHKKIKKIMFYPVVTLI 171

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           I  +L   +   +    P ++ +     R   L  +      +   +   ++   +
Sbjct: 172 ISVALSLAMLLFIV---PQFIELY--SGREKPLPLITQMLFTLSHFLQHSLLQVTI 222


>gi|150016556|ref|YP_001308810.1| type II secretion system protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149903021|gb|ABR33854.1| type II secretion system protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 371

 Score = 44.3 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 9/154 (5%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQH 60
           K  IK +     +        + +  + G+ +++A+ ++    S  +  +    V+E   
Sbjct: 23  KKRIKFKHKVNEEQLALISGSLAQIYKDGIRITEALDLVADILSSKIYKDSLYGVLELIK 82

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SLS+  S      P      F   I    +  G L E L  LS        +K +++
Sbjct: 83  QGSSLSQGFSEFKDLYP-----EFFIGIISIGENTGKLYEVLKGLSVYYDKSLFIKKEIK 137

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
              +      +I  S+      LV    P +  +
Sbjct: 138 NACIYPM---FIFISMILLSIFLVNEVIPNFFEI 168


>gi|46143867|ref|ZP_00204586.1| COG1459: Type II secretory pathway, component PulF [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|303252876|ref|ZP_07339035.1| protein transport protein HofC-like protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307247866|ref|ZP_07529902.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307250118|ref|ZP_07532080.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|39932991|gb|AAR32669.1| type IV pilin biogenesis protein [Actinobacillus pleuropneumoniae]
 gi|302648306|gb|EFL78503.1| protein transport protein HofC-like protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306855668|gb|EFM87835.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306857849|gb|EFM89943.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 400

 Score = 44.3 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/176 (10%), Positives = 61/176 (34%), Gaps = 11/176 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71
            +     +  +   + A +P+  A+ +++  +       +   +      G ++S S+++
Sbjct: 57  SESITQVIKQLALLLNAAVPLKQALNMLLENTYHIRIYMWLNDLNRLIESGYTMSSSLTK 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +  Y+   E       +    +  G L E L N++      + +  K++ +      +  
Sbjct: 117 LNLYLAKSE-----IQLVRIGEQSGRLGEILQNIAVNRHQTEKLHKKIKKIMFYPVVTLI 171

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           I  +L   +   +    P ++ +     R   L  +      +   +   ++   +
Sbjct: 172 ISVALSLAMLLFIV---PQFIELY--SGREKPLPLITQMLFTLSHFLQHSLLQVTI 222


>gi|296242113|ref|YP_003649600.1| type II secretion system F domain-containing protein [Thermosphaera
           aggregans DSM 11486]
 gi|296094697|gb|ADG90648.1| Type II secretion system F domain protein [Thermosphaera aggregans
           DSM 11486]
          Length = 581

 Score = 44.3 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 49/139 (35%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R    ++     +  +V   + GLP   ++  +  +         +++     LG+SL +
Sbjct: 373 REYTIINGITRFIRDLVEVRKTGLPPEKSIIELSTRDYGVFSKYLKKISLELTLGVSLRK 432

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
            I  + + +          +++   ++GG   + L NL+      + ++A+ +       
Sbjct: 433 IIEELFKKIKPWRAKVLLFILTDSIEVGGGTVDVLENLAWFAESIEAIEAEKKRSMRTLM 492

Query: 128 ASAWIIGSLPFCVSTLVYF 146
              ++   L       +  
Sbjct: 493 IVPYLGAVLTAFTIVFMAV 511



 Score = 40.9 bits (94), Expect = 0.075,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 66/184 (35%), Gaps = 5/184 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIET 58
             +   R +    +FP  +  +   V +GL    A   I+  S           R V+  
Sbjct: 91  SMVAGSRASAIDGEFPYTISYLSIMVMSGLSPYIAFERILKGSIIFQKTGELAQRFVLLN 150

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           + LG     + + +    P   V    +      + GG++ + L   +R L +   +  K
Sbjct: 151 KILGKDPLTAFAMLSDRNPSSRVRETLSGYISTVKAGGDVIDYLNKRARALFNDLLVSMK 210

Query: 119 VQALSMEAKASAWIIGSLPFCV-STLVYFTSPGYMNVL-INDPRGHMLLGVAAAFMLIGI 176
           + A  +     +++   L   +  T++YF +  Y  V+      G M L +      I I
Sbjct: 211 IIADRLGGLLESYLAIVLLTMISFTVLYFVTASYSGVISFGIDTGTMSLLLYILMPFISI 270

Query: 177 MVMR 180
            ++ 
Sbjct: 271 AIIY 274


>gi|258646630|ref|ZP_05734099.1| putative bacterial type II secretion system protein F domain
           protein [Dialister invisus DSM 15470]
 gi|260404051|gb|EEW97598.1| putative bacterial type II secretion system protein F domain
           protein [Dialister invisus DSM 15470]
          Length = 390

 Score = 44.3 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 61/173 (35%), Gaps = 13/173 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R A   +++          + AG+PV++ + ++ G  S   +     +  T  
Sbjct: 50  VSLFKRRRLADLAEEWE-------SLLSAGIPVTETLDILGGGRSGKEKILLGEIKATIE 102

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S++ES +    + P      F T +    +L G + E L   +   R  +   A ++
Sbjct: 103 AGHSIAESFAGSRAFPP------FFTALLQVGELSGTIPEQLRLAAACYRKEEEFIAGMK 156

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           +         +    +   + T++  +     + L           +A    L
Sbjct: 157 SALSYPVFVLFFSFLVFALILTVILPSFAALFDALDIPLPAVTRAALALGLFL 209



 Score = 39.3 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/126 (11%), Positives = 36/126 (28%), Gaps = 6/126 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   +++G  +SDA+A I   + +    E    I+                + M      
Sbjct: 262 LSALLKSGKTLSDALADIADITDNSAVKEELLKIKKDIERGG------DFAQSMERSFGD 315

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
                +       G L   L   + ++ +    K       +E     ++       + +
Sbjct: 316 TALARMIHVGMESGRLPLFLERSAHLMTEETKRKLTGFRKILEPSLLLFVGLVTAAIIFS 375

Query: 143 LVYFTS 148
           ++    
Sbjct: 376 VLLPVF 381


>gi|283835166|ref|ZP_06354907.1| protein transport protein HofC [Citrobacter youngae ATCC 29220]
 gi|291069467|gb|EFE07576.1| protein transport protein HofC [Citrobacter youngae ATCC 29220]
          Length = 400

 Score = 44.3 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 50/164 (30%), Gaps = 6/164 (3%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRY 75
              +  +   ++AGL +S  ++++  Q          R +      G+SLS S+S     
Sbjct: 61  AETIHQLATLLKAGLTLSTGLSLLAEQHPSSQWQALLRTLAYDMEQGISLSTSLS----- 115

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                       +    +L G L +    L+R  + ++ +  KV+           +   
Sbjct: 116 HWQHVFPPLYQAMIRTGELTGKLDDCCFELARQQKHQQQLADKVKKALRYPIIIITMAVM 175

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           + F +   V                      +A A+       +
Sbjct: 176 VVFAMLQFVLPEFAAIYRTFNTPLPTLTRWIIAIAYYSRQWGWL 219


>gi|152964449|ref|YP_001360233.1| type II secretion system protein [Kineococcus radiotolerans
          SRS30216]
 gi|151358966|gb|ABS01969.1| type II secretion system protein [Kineococcus radiotolerans
          SRS30216]
          Length = 165

 Score = 44.3 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 6/94 (6%)

Query: 1  MKHLIKKRTAKFLDD----FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF--RR 54
          M++ + +R      +     P  LD++  +V AGLP   A+   V   +     E   RR
Sbjct: 1  MRNRLTQRRGSLRREPPVDVPLVLDLVAAAVEAGLPPGRALEAAVDALAGTGAEETALRR 60

Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVI 88
          V      G S  E+   +       +    + ++
Sbjct: 61 VAVQLSWGSSPEEAWRDLTGESERWDELAEALLL 94


>gi|296121549|ref|YP_003629327.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
 gi|296013889|gb|ADG67128.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
          Length = 347

 Score = 44.3 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 57/174 (32%), Gaps = 13/174 (7%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + +G+ +  A+ +   ++ D       +R+I+    G  LSE++       P
Sbjct: 15  WCRSLSTLLHSGVALIRALELAGKRAGDQRFGPVTQRLIQEVRSGNGLSEALIAEGSTFP 74

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  GNL E L +L+     +  M+    A        A     + 
Sbjct: 75  -----ALLVDMVSVGEQTGNLPEVLTSLAGHFDHQVQMRRTFIAAITWPVLQAVAAILIV 129

Query: 138 FCVSTLVYFTSP-------GYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
             +  ++   +          + V +    G +      A +L+   +   MIN
Sbjct: 130 AILIVVLGIVAQVTGSSPLDVLGVGLTGTTGAVAWLSGWAMLLVAGCIGWEMIN 183


>gi|311744547|ref|ZP_07718347.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
 gi|311312166|gb|EFQ82083.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
          Length = 232

 Score = 44.3 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 58/152 (38%), Gaps = 5/152 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             ++R A+ +   P ALD++V ++ AG     A AV+   +  P+  E R +     +  
Sbjct: 81  ARQRRQAEMVRLLPAALDLVVTALEAGRSPGGAFAVVADAAPAPLAEELRGLARRLEVAA 140

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              +    +VR      ++     +      G   +  +A ++  LR  +  +A++   S
Sbjct: 141 DPLDVWDALVRD---PTLAPVGRALRRSEVTGMPAARVVARVADDLRRTR--RAEIAHRS 195

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                +      L F  +  +    P  + ++
Sbjct: 196 RSVGVATAAPLGLCFLPAFFLVGIVPTVVGMV 227


>gi|126459953|ref|YP_001056231.1| type II secretion system protein [Pyrobaculum calidifontis JCM
           11548]
 gi|126249674|gb|ABO08765.1| type II secretion system protein [Pyrobaculum calidifontis JCM
           11548]
          Length = 256

 Score = 44.3 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 75/191 (39%), Gaps = 20/191 (10%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESI 69
           +     P  L ++  +V AG+ + +A  V+ G    P  + FRRV+    +G  ++ E++
Sbjct: 36  RLEGQIPQVLRMVADAVGAGMGLREAFEVVAGMGLYPANAVFRRVLSLAEVGGLAVDEAL 95

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL----ANLSRILRDRKNMKAKVQALSME 125
            R+   +P      F+ +++  ++ G  L E L     + + ++  R+ + ++++     
Sbjct: 96  WRVASELPSPNFRRFALIVAEGARSGARLGEVLGVAARSFAVVVDFRRELWSQLRPYVAL 155

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-------------HMLLGVAAAFM 172
             A   +   L   +   +  +   +       P G              +L   A    
Sbjct: 156 FYAVVAVYVVLADVLVYFLLPSVAKFSAS--GGPWGGVSASVPPREELVPVLFLTALVQS 213

Query: 173 LIGIMVMRLMI 183
           +IG +++  + 
Sbjct: 214 VIGGLIVGRLA 224


>gi|317046911|ref|YP_004114559.1| type II secretion system F domain-containing protein [Pantoea sp.
           At-9b]
 gi|316948528|gb|ADU68003.1| Type II secretion system F domain protein [Pantoea sp. At-9b]
          Length = 399

 Score = 44.3 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/155 (11%), Positives = 46/155 (29%), Gaps = 4/155 (2%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            +  +   ++AGLP+++++A++     D       R +        L+            
Sbjct: 64  LVQQLATLLKAGLPLAESLALLAEGHPDIGW----RTLLKGLQQQVLAGIPFSQALRGWP 119

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           Q        +    +L G L E    L++    ++ ++ KV            +  ++  
Sbjct: 120 QIFPPLFPALMQVGELTGQLDECCRQLAQQQTSQQLLRQKVVKALRYPLFIMLVAIAVST 179

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
            +   V                      +A + + 
Sbjct: 180 GMLLFVLPEFVAVYASFDAPLPALTASVMALSALF 214



 Score = 40.9 bits (94), Expect = 0.089,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 5/134 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                 DI+  + RAGL +  ++  +    +  +  E    ++       +S        
Sbjct: 264 QLTQIFDILQLTQRAGLTLLQSLQAVEVTLTSLLWREAISQLQQH-----ISAGAPLHQA 318

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
               Q  +     +    +  G L   L+ L+   R+    +A+  A ++E      I G
Sbjct: 319 LHQHQLFTPLCAQLIKVGEEVGALDVMLSRLAEWHRENTLGRAESLAAALEPMMMVVIGG 378

Query: 135 SLPFCVSTLVYFTS 148
            +   V  +     
Sbjct: 379 IVGTLVIAMYLPVF 392


>gi|163781953|ref|ZP_02176953.1| pilus assembly protein PilC [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883173|gb|EDP76677.1| pilus assembly protein PilC [Hydrogenivirga sp. 128-5-R1-1]
          Length = 407

 Score = 44.3 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/187 (10%), Positives = 58/187 (31%), Gaps = 18/187 (9%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           +     KR      D  +  + +    ++G+P+   +  +     +P ++     V    
Sbjct: 56  LHFRSVKRK-----DLIDLFENLHLLAQSGVPLGVGLWDLAEDMENPAIKDMLHDVAYRI 110

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             GLS+S++++R    +        +  +    +  G+L     ++S      ++  +KV
Sbjct: 111 QSGLSISDALARYEDVLG-----SIAVNLVRIGEETGSLDRVFKDISEHYARIEDFVSKV 165

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-------AFM 172
           +   +    + + +          V          L        ++ +            
Sbjct: 166 KQALIYPAFAVFTVTIALVFWLVYVLPKLAELFKGLNVQLPTITIVVMNISEFVKEYILY 225

Query: 173 LIGIMVM 179
           +    V+
Sbjct: 226 ISAFFVI 232



 Score = 34.7 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 42/133 (31%), Gaps = 5/133 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           ++    + +   V AG+ + + +  +     + V            +  S+S   S    
Sbjct: 269 NYAFFSEYMRLLVSAGVSLYETLQTLEESFHNRVFK-----RAMASMKESVSGGSSISES 323

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
               Q        +    +  G L + L  L+R   ++ +   +  A  +E      +  
Sbjct: 324 MRRTQLFPSLMLRMIAVGEETGGLDDQLDYLARYYYNKLDYITQNIAKIIEPLIIITVGL 383

Query: 135 SLPFCVSTLVYFT 147
            +   + +L+   
Sbjct: 384 FMAIIMISLLLPI 396


>gi|241763208|ref|ZP_04761267.1| type II secretion system protein [Acidovorax delafieldii 2AN]
 gi|241367707|gb|EER61973.1| type II secretion system protein [Acidovorax delafieldii 2AN]
          Length = 316

 Score = 44.3 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/144 (11%), Positives = 45/144 (31%)

Query: 44  SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALA 103
            SD    E +R +         + +          +E S     +    +  GNL   L 
Sbjct: 3   LSDEAEDERQRHLVAALRAEVNAGATFARALSQHPREFSDIYCAVIGAGEHSGNLGLVLE 62

Query: 104 NLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
            L+  L +R+ ++AK+   ++       +  ++   + + V                   
Sbjct: 63  RLADDLEERQALQAKLVGAALYPAIVTLVAIAIVLFLVSYVVPQVASVFAGTKRALPFLT 122

Query: 164 LLGVAAAFMLIGIMVMRLMINFDV 187
           +  +  + ++     + L+    +
Sbjct: 123 VAMLGLSALVRSYGWVLLIATIVI 146



 Score = 35.5 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       ++          +     G  L+ ++++  R+  
Sbjct: 185 FASTLAMLASAGVPILKALQAAAETLNNRAMRADALDALVLVREGAPLASALAQKKRFPG 244

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                   ++ +   +  G L   L   +  L      +A   A  +E      +   + 
Sbjct: 245 ------LLSMFARLGEQTGQLPVMLQRAATQLSTEVQRRAMQLATILEPLLIVAMGLVVM 298

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 299 LIVLAVLLPI 308


>gi|167584853|ref|ZP_02377241.1| type II secretion system protein [Burkholderia ubonensis Bu]
          Length = 259

 Score = 44.0 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 50/160 (31%), Gaps = 7/160 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--PVRSEFRRVIETQHLGLSLSESISRM 72
                L  +   + AGL + +A+  +  ++      +    R++     G  LS+++++ 
Sbjct: 62  ALALFLQELSTLLDAGLVLIEALEALRDKADAGKAAKHVIDRILAVMVEGQPLSKALAQQ 121

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P              S+  G L  AL    +     + ++ +V    +       +
Sbjct: 122 PEVFPP-----LLVATVESSEGSGQLPVALKRYQQYEVRIEQIRKRVMGALIYPAVVIGV 176

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
             ++   ++  V          L   P     +   A  +
Sbjct: 177 GVAILLFMAFFVIPRFAVVFESLTTLPATAQAMLWWATLL 216


>gi|297537652|ref|YP_003673421.1| Type II secretion system F domain-containing protein [Methylotenera
           sp. 301]
 gi|297256999|gb|ADI28844.1| Type II secretion system F domain protein [Methylotenera sp. 301]
          Length = 393

 Score = 44.0 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 44/147 (29%), Gaps = 6/147 (4%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                  +   + AGL   +A   +   ++    R     +I     G SLS ++ +   
Sbjct: 57  LVLFSQELYALLEAGLTQVEAFETMAEKETRTENRKMLVEIISKLREGHSLSTALQQFSS 116

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
             P              S+  G+LSE+L+           ++ K+ + S+       +  
Sbjct: 117 VFP-----ALYVSTIRASEKTGDLSESLSRYIAYQSQMDLVRKKIVSASIYPVLLIGVGS 171

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRG 161
            +   +   V          +  D   
Sbjct: 172 LVTLFLMLYVVPKFSKIYEDIGTDLPF 198



 Score = 37.0 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 33/100 (33%), Gaps = 6/100 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                   +   +R G+PV  A+ ++ G     +R +  +   +   G  +S ++ +   
Sbjct: 259 QLARFYRTLGMLLRGGIPVVSALEMVSGLLQPILRRQLVQASNSIREGKPISHAMEQFGL 318

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
             P       +  +    +  G + E    ++    D   
Sbjct: 319 TTP------VALRLLRVGERTGGMGEMTERIANFYDDEMA 352


>gi|320530649|ref|ZP_08031698.1| type II secretion system F domain protein [Selenomonas artemidis
           F0399]
 gi|320137100|gb|EFW29033.1| type II secretion system F domain protein [Selenomonas artemidis
           F0399]
          Length = 405

 Score = 44.0 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 45/144 (31%), Gaps = 7/144 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSD--PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             + +   + AG+PV +A+  I   +            +      G +LS+++ R  R  
Sbjct: 70  LFEELAALLAAGIPVHEALGQIAAGTDAASAYGRLVAALHADVLCGTALSQAMERRPR-- 127

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
                S     +    +  G L    A  +  L +   ++  +++            G  
Sbjct: 128 ---VFSPSVVGMVRAGEESGTLDHIFAETAAFLTEAHTLRESMKSALAYPLFLLVATGFS 184

Query: 137 PFCVSTLVYFTSPGYMNVLINDPR 160
              ++  +       +  L  +P 
Sbjct: 185 IVLMTMFILPVFASLLRDLGAEPP 208


>gi|317122037|ref|YP_004102040.1| type II secretion system F domain [Thermaerobacter marianensis DSM
           12885]
 gi|315592017|gb|ADU51313.1| Type II secretion system F domain [Thermaerobacter marianensis DSM
           12885]
          Length = 300

 Score = 44.0 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 1/120 (0%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P  L+ I  + R GL +  AV V       P+  + R        G  L + +  + R 
Sbjct: 159 LPGWLEDIALAARGGLNLRQAVEVANDVGEGPLIDDAREAFARVRAGQPLRQPLLELARL 218

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P  EV+     +      G  L++ L    R++R     + + +           I   
Sbjct: 219 YPDPEVTVALRTLVEAETRGLPLAQTLEEQVRLMRALAARRLQ-RHADSLPFWLTVITMG 277


>gi|269129022|ref|YP_003302392.1| type II secretion system protein [Thermomonospora curvata DSM
           43183]
 gi|268313980|gb|ACZ00355.1| type II secretion system protein [Thermomonospora curvata DSM
           43183]
          Length = 247

 Score = 44.0 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 53/172 (30%), Gaps = 5/172 (2%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVI-----VGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
              D +   + AG     A            S   +    R           +  ++ R+
Sbjct: 70  ELCDGVAAELHAGRTPEAAFTAAAAVLPAEVSVPLLAERRRGGPAGPPDPGDIPAALERL 129

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 + +        + +  G   +  +A+L+  LRD +  + +V A     +A+A +
Sbjct: 130 SARPGAEGLRLLGACWRIGADSGATFATVIADLAAALRDEEAQRREVAAQLAGPRATARL 189

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +  LP     +        +  L     G + L +     ++G+     +  
Sbjct: 190 LAGLPLLGLGMAAALGADPLAFLCGTLPGLICLTLGLGLDVLGLWWTNRLAR 241


>gi|227822842|ref|YP_002826814.1| general secretion pathway protein F, GspF [Sinorhizobium fredii
           NGR234]
 gi|227341843|gb|ACP26061.1| general secretion pathway protein F, GspF [Sinorhizobium fredii
           NGR234]
          Length = 404

 Score = 44.0 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 56/157 (35%), Gaps = 10/157 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
           DF      +   + AG  +  A+  +V        R E   ++     G S S + + M 
Sbjct: 66  DFGRFFSELQILLEAGFTIDAALKTVVDDREMAAGREELSNLVAAVMAGGSFSSAFAHMQ 125

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
              P        T + +  +  G L + +A+L++   D+K  +A+     +      +++
Sbjct: 126 NAPP------EVTALLLSGEQAGRLEQVVASLAQSFEDQKARRAEAIETLLYPA---FLL 176

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             + F +  +++   P    V         +L    +
Sbjct: 177 AVMLFSIGVIMFVLVPAIEPVFEGAEHARPMLISVLS 213


>gi|207724220|ref|YP_002254617.1| general secretion pathway gspf-related protein [Ralstonia
           solanacearum MolK2]
 gi|206589433|emb|CAQ36394.1| general secretion pathway gspf-related protein [Ralstonia
           solanacearum MolK2]
          Length = 399

 Score = 44.0 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 72/188 (38%), Gaps = 15/188 (7%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            +K R  K           +   +RAGL VS+A+  +  +   P    +RR+ +    GL
Sbjct: 54  KLKSRRRKVDAGL--VCIELGGLLRAGLTVSEALDSLAHRDDHPNVDVYRRLYDGLLSGL 111

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            LSE++ ++    P              ++  G + +AL   ++  + ++ ++ KV + +
Sbjct: 112 PLSEAMKQVEGIFPG-----ILVAAIQANERSGRIPDALDEYAKYAQAQEALRKKVVSAA 166

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMN--VLINDPRGHMLLGVAAAF------MLIG 175
           +           +   +   V        +   +       +LL V          +L+G
Sbjct: 167 VYPATVIGFGLLVVLFLLAYVIPRFAMVYDGTAMQMSGPTRILLAVGHFIHERGWGLLVG 226

Query: 176 IMVMRLMI 183
           I+++ +++
Sbjct: 227 IVLLGVIV 234


>gi|153810170|ref|ZP_01962838.1| hypothetical protein RUMOBE_00551 [Ruminococcus obeum ATCC 29174]
 gi|149833349|gb|EDM88430.1| hypothetical protein RUMOBE_00551 [Ruminococcus obeum ATCC 29174]
          Length = 347

 Score = 44.0 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 59/166 (35%), Gaps = 12/166 (7%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
            +  N    +   + +G+ V++ +A++  +S  D  R     ++ +     SL++++   
Sbjct: 8   RELSNFFGQLGMLIHSGISVTEGLAILQDESQTDTDREIITALLTSMEETGSLTQAMETS 67

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R+         S       +  G L E L +L+      + +  ++++          +
Sbjct: 68  GRFPH------SSVSYIKTGEETGCLDEILNSLTLHYEQEQEVSEQIRSAVTYPLIMLGM 121

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +G +   +   V          +     G  +  ++   +  G ++
Sbjct: 122 MGIVIVVLLVKVLPVFQQVFQQM-----GMEMNTLSLGLLKAGSIL 162


>gi|291561781|emb|CBL40581.1| hypothetical protein CK3_08150 [butyrate-producing bacterium SS3/4]
          Length = 408

 Score = 44.0 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 9/160 (5%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-------DPVRSEFRR 54
           K   K+   + + D+P  L   V    AG PV  A    V  +         PV  E R 
Sbjct: 251 KEAKKQWEDRMILDYPELLSDFVVLTGAGYPVRQAWKKQVVDAESKNTVLIHPVYREMRT 310

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
            +     G     +     R + L     F++++      GG     L  L   +     
Sbjct: 311 ALNQMETGTPEIRAYGEFGRRIGLGCYIKFASLLGNSVSTGGKDLRRL--LEEEMETAFR 368

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
            + ++     E  ++  +I         +V   +P ++++
Sbjct: 369 QRKELALRKGEEASTKLLIPMFLMLGVVMVMVVAPAFLSL 408


>gi|160878195|ref|YP_001557163.1| hypothetical protein Cphy_0034 [Clostridium phytofermentans ISDg]
 gi|160426861|gb|ABX40424.1| hypothetical protein Cphy_0034 [Clostridium phytofermentans ISDg]
          Length = 485

 Score = 44.0 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 50/172 (29%), Gaps = 27/172 (15%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---------------- 45
           +   +++  + L D+P  +      + AG+    A   IV   +                
Sbjct: 307 REREQQKQEQLLLDYPEIMMKYTLLLSAGMTTYGAWERIVKDYNTRRERELGGTRRNKKK 366

Query: 46  ----------DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQL 94
                          E         LG+S S +  R  R   L     FST+I     + 
Sbjct: 367 LSKSKSMKSMRYAYEEMIITKNEIDLGVSESVAYERFGRRCKLLSYLRFSTIIVQNMKKG 426

Query: 95  GGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
              +   L   S      +  +AK        K    ++G L   ++ L+  
Sbjct: 427 NKGMIPMLEAESVQALLDRKEQAKRLGERASTKMLMPMMGMLCIVIAILMVP 478


>gi|330813193|ref|YP_004357432.1| general secretion pathway protein F / Type II secretory pathway,
           component PulF / Type IV fimbrial assembly protein PilC
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486288|gb|AEA80693.1| general secretion pathway protein F / Type II secretory pathway,
           component PulF / Type IV fimbrial assembly protein PilC
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 330

 Score = 44.0 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 54/161 (33%), Gaps = 8/161 (4%)

Query: 26  SVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFF 84
            V+AGLP+   + ++  Q  +P ++     + +    G +LS+      +          
Sbjct: 1   MVKAGLPILQVLDMLGSQLENPSLKEIVVEIKKKLEGGTTLSKCFESYPKI-----FDNI 55

Query: 85  STVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144
              +    +  G L   L  L   L  ++ +K K++   M       +  ++   +   V
Sbjct: 56  YVNLIKAGEASGKLDVFLLKLVESLEKKERIKKKIKGALMYPAVMFTVAITVMVFMLIKV 115

Query: 145 YFTSPGYMNVLINDPRGHM--LLGVAAAFMLIGIMVMRLMI 183
                     +     G    +L  +      G ++  L+I
Sbjct: 116 VPVFAKMYEGMGIALPGATASILSASDFMRGTGGLMTFLII 156


>gi|225026644|ref|ZP_03715836.1| hypothetical protein EUBHAL_00895 [Eubacterium hallii DSM 3353]
 gi|224956014|gb|EEG37223.1| hypothetical protein EUBHAL_00895 [Eubacterium hallii DSM 3353]
          Length = 445

 Score = 44.0 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 50/164 (30%), Gaps = 10/164 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---------QSSDPVRSE 51
           ++   KK   +   DFP  + ++   + AGL    AV  I            S      +
Sbjct: 282 LQEEGKKCQEQAERDFPVIVHLLTLYMGAGLSFFSAVKRISQNYQKQRELDDSKKYAFEK 341

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANL-SRILR 110
             R+ +    G+S  E+                S ++      G   +  L     R   
Sbjct: 342 MMRMEQQMSNGVSQREACQDWGMQFRTDSYQKLSLILIQSFTKGSKEAAMLMEAEEREAF 401

Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
            ++  +AK +      +    +I  L   +  ++Y     +   
Sbjct: 402 HKRIDRAKKEGEEASTRLLFPMILLLCQVMLLVMYPALTRFQGF 445


>gi|68248899|ref|YP_248011.1| putative type IV pilin secretion protein [Haemophilus influenzae
           86-028NP]
 gi|59939220|gb|AAX12379.1| PilC [Haemophilus influenzae]
 gi|68057098|gb|AAX87351.1| putative type IV pilin secretion protein [Haemophilus influenzae
           86-028NP]
          Length = 406

 Score = 44.0 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/162 (10%), Positives = 61/162 (37%), Gaps = 6/162 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
             +    L+ +   +++ +P+ +++ ++    +   +     R++++   GL+ S++I +
Sbjct: 56  NSEISELLNQLATLLQSVIPLKNSLQILQQNCTQIMLNKWLERLLQSIESGLAFSQAIEQ 115

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +Y+  QE       +    ++ G L+     ++        ++ K+Q + +       
Sbjct: 116 QGKYLTQQE-----IQLIQVGEMTGKLAVVCKKIATHRSQSLALQRKLQKIMLYPSMVLG 170

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           I   L   +   +        +    +      + ++ +  L
Sbjct: 171 ISLLLTLALLLFIAPQFAEMYSGNNAELPTITAILLSISNFL 212



 Score = 38.6 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 12/137 (8%), Positives = 44/137 (32%), Gaps = 4/137 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS--EFRRVIETQHLGLSLSESIS--R 71
             N    +   ++AG+P++ A+   + ++            ++  + +   L        
Sbjct: 263 LVNFSQSLQIMLQAGVPLNQALDSFLPRTQTWQTKKTLVNDMVLDKEVRSILQWVSQGYA 322

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
               +        +  +    +  G L+  L +++   +++ N +  + +  +E      
Sbjct: 323 FSNSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIADNYQEKLNHQIDLLSQMLEPLMMVI 382

Query: 132 IIGSLPFCVSTLVYFTS 148
           I   +   +  +     
Sbjct: 383 IGSLIGIIMMGMYLPIF 399


>gi|227502474|ref|ZP_03932523.1| bacterial type II secretion system protein F domain protein
           [Corynebacterium accolens ATCC 49725]
 gi|227076843|gb|EEI14806.1| bacterial type II secretion system protein F domain protein
           [Corynebacterium accolens ATCC 49725]
          Length = 259

 Score = 44.0 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 59/182 (32%), Gaps = 1/182 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           ++ +   +  +       ++   +RAG  ++ A+             +    +E+    +
Sbjct: 74  MVARTRRRGREALAGYFGVVTADLRAGATLASALTRGAESLPATTPRDMSAALESTATAV 133

Query: 64  SL-SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +  +     +       E++    ++ + +Q G  ++         +   +       A 
Sbjct: 134 ARGAPPHVALSGAHADAELTRLGHLLELSTQHGIGVASLFEQAQSRMDALRRHHQSTAAG 193

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
               +A+A ++  LP     +        +  L+    G +LL +       G    R++
Sbjct: 194 LQGPQATATVLACLPIAGIAMGGAMGANSLGFLLGGGLGGILLVIGVGLACGGFAWSRVI 253

Query: 183 IN 184
           I 
Sbjct: 254 IR 255


>gi|110802764|ref|YP_699126.1| pilus biogenesis protein [Clostridium perfringens SM101]
 gi|110683265|gb|ABG86635.1| putative pilus biogenesis protein [Clostridium perfringens SM101]
          Length = 339

 Score = 44.0 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 54/144 (37%), Gaps = 9/144 (6%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESIS 70
           F D+       +   V++G+PV  ++ +I          E  +R+ +    G +LS++  
Sbjct: 4   FKDEASYICLNLSTYVKSGMPVGRSLDLIKNTVKGKKYKESLKRIEKKVLNGEALSKAFK 63

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
                 P          +    +  GNL E L   +R +   K +K K+        +  
Sbjct: 64  EEGNLYP-----DLMKDMMRIGEESGNLEEVLEKCARNILAEKEIKNKIIKSLRYPVS-- 116

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNV 154
            ++  L   +   + +  P ++++
Sbjct: 117 -LLIGLIIMIFGYITYILPQFVDM 139


>gi|167039382|ref|YP_001662367.1| hypothetical protein Teth514_0724 [Thermoanaerobacter sp. X514]
 gi|300914023|ref|ZP_07131340.1| Type II secretion system F domain protein [Thermoanaerobacter sp.
           X561]
 gi|307725292|ref|YP_003905043.1| type II secretion system F domain-containing protein
           [Thermoanaerobacter sp. X513]
 gi|166853622|gb|ABY92031.1| hypothetical protein Teth514_0724 [Thermoanaerobacter sp. X514]
 gi|300890708|gb|EFK85853.1| Type II secretion system F domain protein [Thermoanaerobacter sp.
           X561]
 gi|307582353|gb|ADN55752.1| Type II secretion system F domain protein [Thermoanaerobacter sp.
           X513]
          Length = 249

 Score = 44.0 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 47/145 (32%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            ++ P A++I +  +  G+   + ++ IV      VR            G SL ++++  
Sbjct: 103 EEELPAAIEIFINGLEVGMNKENIISYIVRTREGVVRDLLHEAQVRLDTGSSLKDALTYA 162

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                      F  +I+ +     ++ E L  L   +R+    K    A  ++      I
Sbjct: 163 ASKSLNDHFKRFVKIITGEFASEQDIKENLEELLDEVREINYNKKTESASVLDNSLFFPI 222

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIN 157
                  +  +        +    N
Sbjct: 223 FLGYFIPILIIFALPFVLSLKGFFN 247


>gi|296132333|ref|YP_003639580.1| hypothetical protein TherJR_0812 [Thermincola sp. JR]
 gi|296030911|gb|ADG81679.1| hypothetical protein TherJR_0812 [Thermincola potens JR]
          Length = 290

 Score = 44.0 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/176 (8%), Positives = 64/176 (36%), Gaps = 2/176 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   K+     +   P+   I++  +     +  A  +      +P+++  +  ++   
Sbjct: 99  VQRYKKRERMALMVAIPDFARILIARLVDHHSIVKAFEMTQKDCFEPMKTLAQEFVKDVG 158

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISV--QSQLGGNLSEALANLSRILRDRKNMKAK 118
           +G+ +  ++  +   +  ++ + F+  + +  Q         A+      +         
Sbjct: 159 VGIGVQLALENLKVKVSYRKFNTFTETLLLAHQEGYSTEALAAMKKAVESIESDIKAIEA 218

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +Q  + + K   + +    +    ++ F +    N+ ++   G +L+ +     ++
Sbjct: 219 LQITTRKKKRELFSVVIASWLFPVVLSFMNTDNTNIFLDTFSGKVLIFLYIISTMV 274


>gi|260913756|ref|ZP_05920232.1| type IV pilus assembly protein PilC [Pasteurella dagmatis ATCC
           43325]
 gi|260632295|gb|EEX50470.1| type IV pilus assembly protein PilC [Pasteurella dagmatis ATCC
           43325]
          Length = 404

 Score = 44.0 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 71/178 (39%), Gaps = 21/178 (11%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISR 71
             +  +   ++   +++ LP+ +A+  ++  +++   +++ R ++     G++ S +++ 
Sbjct: 57  QAELCDLFTLLATLLQSTLPLKEALQALLQNTTNIQLNQWLRNLLMQLESGVAFSVALAS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +  YM  QE+      +    ++ G L++    +++  +    ++ KVQ + +       
Sbjct: 117 LGSYMNYQEL-----QLIKVGEMTGRLAQVCQQIAQYRQQSLVLQRKVQKIMLYPSIIVG 171

Query: 132 IIGSLPFCVSTLVYFTS---------PGYMNVLINDPRGHM-----LLGVAAAFMLIG 175
           I   L   +   +             P +  +L N   G +     LL +    +  G
Sbjct: 172 ISLLLTLMLLLFIVPEFAVMYQNQKLPVFTELLFN-LSGWLSDNGFLLIILTVLISFG 228


>gi|294781781|ref|ZP_06747114.1| general secretion pathway protein F [Fusobacterium sp. 1_1_41FAA]
 gi|294481891|gb|EFG29659.1| general secretion pathway protein F [Fusobacterium sp. 1_1_41FAA]
          Length = 345

 Score = 44.0 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 62/152 (40%), Gaps = 7/152 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
             + +   +++GL  + A+ +I+ +  +        +++  H  L++ ++I    +    
Sbjct: 11  FTNELALLIKSGLTFTKAIEIILKEEKNKKFK---DILKKIHKNLTMGKNIYDSFKPFEN 67

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
              S +  ++ +    G N+ E+L ++S+ L    + + K+  + +       +I     
Sbjct: 68  TFGSTYLYILKIGELSG-NIVESLEDISKSLDFDLSRRKKLGGILIYPI---VVICLTFL 123

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
            VS L+ +  P ++ +   +     L+     
Sbjct: 124 IVSFLLIYILPSFITIFEENQIELPLVTRILL 155


>gi|167036498|ref|YP_001664076.1| hypothetical protein Teth39_0067 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116990|ref|YP_004187149.1| type II secretion system F domain-containing protein
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166855332|gb|ABY93740.1| hypothetical protein Teth39_0067 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319930081|gb|ADV80766.1| Type II secretion system F domain protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 249

 Score = 44.0 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 47/145 (32%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            ++ P A++I +  +  G+   + ++ IV      VR            G SL ++++  
Sbjct: 103 EEELPAAIEIFINGLEVGMNKENIISYIVRTREGVVRDLLHEAQVRLDTGSSLKDALTYA 162

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                      F  +I+ +     ++ E L  L   +R+    K    A  ++      I
Sbjct: 163 ASKSLNDHFKRFVKIITGEFASEQDIKENLEELLDEVREINYNKKTESASVLDNSLFFPI 222

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIN 157
                  +  +        +    N
Sbjct: 223 FLGYFIPILIIFALPFVLSLKGFFN 247


>gi|256833436|ref|YP_003162163.1| type II secretion system protein [Jonesia denitrificans DSM 20603]
 gi|256686967|gb|ACV09860.1| type II secretion system protein [Jonesia denitrificans DSM 20603]
          Length = 416

 Score = 43.6 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 52/155 (33%), Gaps = 8/155 (5%)

Query: 29  AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVI 88
           AG+PV  A+A           +E      T  +         +       Q         
Sbjct: 92  AGIPVVQALA--------HRLAEDDTAQRTVRVPPRDRCHSFQPADASAEQAARAVVAAC 143

Query: 89  SVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
            + S  G +L+  L   +  LR   + ++     +  A+A+A ++  LP     + Y   
Sbjct: 144 RLSSVTGLSLATVLDTTAAALRRATDARSARTTATAGAEATARLLLFLPLFGLLMGYALG 203

Query: 149 PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
              +  L   P G   L  A  F+L G   +  ++
Sbjct: 204 AQPLTWLTRTPLGWGSLIAAIVFLLAGRAWVARLL 238



 Score = 38.2 bits (87), Expect = 0.58,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 40/138 (28%), Gaps = 3/138 (2%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           LD++   + AG  +  A+  +     D   ++   V     LG S   + +         
Sbjct: 281 LDLLTTVMSAGHSIDSALDTVATHVPDLEVAQLGVVARLLLLGASWQRAWANAPARYAFL 340

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +      S +   L       + I +++ +   + Q LS        +     F 
Sbjct: 341 -GEALADGWQRGSSVIPTLIAT--RDAWIAQEQADAHQRAQRLSSMIVVPVGVCYLPAFV 397

Query: 140 VSTLVYFTSPGYMNVLIN 157
           +  +V       +     
Sbjct: 398 LVGVVPTAVSLGVATFFG 415


>gi|254361084|ref|ZP_04977229.1| possible IVSP family Type IV (conjugal DNA-protein transfer-VirB)
           secretory pathway pilin biogenesis protein PilC
           [Mannheimia haemolytica PHL213]
 gi|261493589|ref|ZP_05990109.1| pili/fimbriae biogenesis protein [Mannheimia haemolytica serotype
           A2 str. BOVINE]
 gi|153092570|gb|EDN73625.1| possible IVSP family Type IV (conjugal DNA-protein transfer-VirB)
           secretory pathway pilin biogenesis protein PilC
           [Mannheimia haemolytica PHL213]
 gi|261310771|gb|EEY11954.1| pili/fimbriae biogenesis protein [Mannheimia haemolytica serotype
           A2 str. BOVINE]
          Length = 398

 Score = 43.6 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 53/141 (37%), Gaps = 6/141 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRM 72
           ++  + L  +   V + +P+  A+++++    +     +   +I+    G + S+S+ ++
Sbjct: 58  EEVNSLLSQLALLVNSAMPLKQALSMLLQNCRNIRLYLWLNELIQHIESGYAFSQSLEKL 117

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             ++  QE       +    +  G L   L NL+      + +  KV+ +         I
Sbjct: 118 GEFVTNQE-----IQLIKMGEQSGKLGIMLTNLAESRAKLEKLAKKVKKILFYPVIVLLI 172

Query: 133 IGSLPFCVSTLVYFTSPGYMN 153
             +L   +  L+         
Sbjct: 173 SLALSIGLLVLIVPQFAQLYG 193


>gi|161507247|ref|YP_001577201.1| competence protein [Lactobacillus helveticus DPC 4571]
 gi|160348236|gb|ABX26910.1| Competence protein [Lactobacillus helveticus DPC 4571]
          Length = 334

 Score = 43.6 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 67/185 (36%), Gaps = 16/185 (8%)

Query: 1   MKHLIKKRTAKF--LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           +K++   +  +    +     LD +  S+  G  + +++ ++        +   +++++ 
Sbjct: 2   LKYMSNSKKDRLNSEEQL-FFLDYLKHSLENGFSLINSIELMPVLWPKK-KELMQKLVKR 59

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G S S  + ++         S  +      +   GNL E L  L+ + R ++    K
Sbjct: 60  MKEGNSFSVELIQLG-------FSKTTVTQVNLALQQGNLIECLNQLAILSRLKQEQVKK 112

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           ++A        A ++  L   + + +                G +++      +L GI  
Sbjct: 113 LRAELSYPFVLAIMMVILLVFMQSFISTQFNDRSEY-----SGDLIMLGLIGAVLAGIYF 167

Query: 179 MRLMI 183
           +  +I
Sbjct: 168 LARII 172


>gi|284176146|ref|YP_003406423.1| hypothetical protein Htur_5119 [Haloterrigena turkmenica DSM 5511]
 gi|284017803|gb|ADB63750.1| hypothetical protein Htur_5119 [Haloterrigena turkmenica DSM 5511]
          Length = 604

 Score = 43.6 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/190 (12%), Positives = 66/190 (34%), Gaps = 14/190 (7%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLG 62
            ++    +  D   +AL I+ R V  G  V  AV +   +      + F R     + L 
Sbjct: 374 AVRHYVREVEDHLTDALYIVGRQVSDGESVESAVDLAATRVPGETGAVFERAAGLQRRLQ 433

Query: 63  LSLSESI---SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           + +  +       +  +P       + ++++ S+ G     A+ +++  L +   ++A+ 
Sbjct: 434 IGVESAFLGPHGALEDVPSPRARGTAALLAIASKEGKPAGRAIVSMADHLEELSEVEAET 493

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN---VLIND-------PRGHMLLGVAA 169
           +    +   +     +    +   V       M    V  +        P   + + +  
Sbjct: 494 KRNLAKVTGTLDATAAYFAPMVAGVTVGMAAMMASQNVFTSSEVDAAAFPAEPLAIVIGI 553

Query: 170 AFMLIGIMVM 179
             +++  +++
Sbjct: 554 YLVMLCFILL 563


>gi|325109359|ref|YP_004270427.1| type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324969627|gb|ADY60405.1| Type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 402

 Score = 43.6 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 43/167 (25%), Gaps = 3/167 (1%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                +     +GLP+   + ++  +          R      L     E    +   + 
Sbjct: 65  ELASHLADLTSSGLPLESGLKMLAEEL-GGQGVIGIRQRRQLSLLARRLEQGESLDEALS 123

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            Q                G    ALA     LR   +++ +V            +   L 
Sbjct: 124 QQGAPPDLIAAVRGGMNSGQPGRALAEYVTYLRSISSLRGRVFLGLFYPLTLFAVSLVLV 183

Query: 138 FCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLM 182
             V   +             +      M++ V+A  +  GI  +  M
Sbjct: 184 TFVMVGIVPQFAEIFEGFGVELPVITKMIMEVSAGMVKNGISFLIAM 230


>gi|269129021|ref|YP_003302391.1| type II secretion system protein [Thermomonospora curvata DSM
           43183]
 gi|268313979|gb|ACZ00354.1| type II secretion system protein [Thermomonospora curvata DSM
           43183]
          Length = 208

 Score = 43.6 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 58/146 (39%), Gaps = 4/146 (2%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
            + D P A+ ++   +R GL   +AV  +      P+ +E R V     LG   + +   
Sbjct: 63  MVADLPIAIGLLAACLRGGLSWDEAVEAVCDAVGGPLGAELRAVAARVRLGADPAAAWLA 122

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           + +     E++  +  ++     G  L+ AL  L+   R      A  +A ++  +A A 
Sbjct: 123 LAQE---PELAPLARTVARAVDSGAALAPALTRLAADRRAAARAAAAARARAVGVRAVAP 179

Query: 132 I-IGSLPFCVSTLVYFTSPGYMNVLI 156
           + +  LP  +   V     G    L+
Sbjct: 180 LGLCFLPAFILLGVAPAVAGIAQTLL 205


>gi|92116354|ref|YP_576083.1| type II secretion system protein [Nitrobacter hamburgensis X14]
 gi|91799248|gb|ABE61623.1| type II secretion system protein [Nitrobacter hamburgensis X14]
          Length = 403

 Score = 43.6 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 47/138 (34%), Gaps = 9/138 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   ++A   + DA+ ++   +    +R    ++      G S +E+++      P
Sbjct: 69  FTRDLALLLKASARLDDALELLSNDADVGRLRPVVGKLRAALLGGESFAEAVAAHPILFP 128

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    ++ G L + L  L       + M+ K+           +++ +  
Sbjct: 129 P-----MYVALVRVGEVSGTLDQVLELLGAERARAEQMRRKLTDAMQYPL---FVLVAAG 180

Query: 138 FCVSTLVYFTSPGYMNVL 155
             +   + F  P +  VL
Sbjct: 181 GVMLFFILFVLPQFSVVL 198


>gi|291526238|emb|CBK91825.1| hypothetical protein EUR_28800 [Eubacterium rectale DSM 17629]
          Length = 408

 Score = 43.6 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/121 (13%), Positives = 37/121 (30%), Gaps = 11/121 (9%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV----------GQSSDPVRSEFRRV 55
           K+R  +   ++P  +  +   + +G+ V  A   I            ++  P   E    
Sbjct: 250 KERNIQLQLEYPEIVSKMAVLMGSGMTVEQAWNRITARYLDKRKNNDENIMPAYEEMLVT 309

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKN 114
                 G++  ++ +     + L        +I          + E L   S    D + 
Sbjct: 310 EREISDGVTGRKAYAGFAERVKLPCYQKLVRIILQSIHKGSKGVCEMLKKESEDAFDERR 369

Query: 115 M 115
           +
Sbjct: 370 L 370


>gi|224373390|ref|YP_002607762.1| msha biogenesis protein mshg [Nautilia profundicola AmH]
 gi|223589385|gb|ACM93121.1| msha biogenesis protein mshg [Nautilia profundicola AmH]
          Length = 405

 Score = 43.6 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 64/169 (37%), Gaps = 8/169 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
           +++   L+ +   + AGL +   V  I     +  +R  F  +      GLSL+ +  + 
Sbjct: 65  EEYIAVLEQMYVMLDAGLAIDMVVGNIKDTIKNKRLRQIFYSLENDIKAGLSLTSAFEKF 124

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +     E+   +  +    +  G+L+ A+ +LS IL +  + + +++  +       + 
Sbjct: 125 EK-----ELGKLTVSMIKLGEETGDLASAIKDLSVILHEILDNRKRLKKATRYPMFIVFA 179

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVM 179
           +      V   V          L  +       LL + A+    G+ ++
Sbjct: 180 MSIAFVIVILFVIPPFKSIFAQLNTELPLPTRFLLWIEASIQEYGLYIL 228


>gi|52424416|ref|YP_087553.1| HofF protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306468|gb|AAU36968.1| HofF protein [Mannheimia succiniciproducens MBEL55E]
          Length = 344

 Score = 43.6 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 60/161 (37%), Gaps = 6/161 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMP 77
            L+ +   + A +P+ +++ +++   S    +++ R ++     G + S+SI     Y+ 
Sbjct: 1   MLNQLATLLDAQIPLKESLHILIQNCSSIPLNQWLRNLLSQLERGFAFSKSIELQGLYLS 60

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            QE+      +    ++ G LS   + ++   + +  ++ K+Q + +       I  +L 
Sbjct: 61  AQEL-----QLIKVGEMSGKLSYVCSQIAHFRQQQLALQRKIQKILLYPLVVLVISATLT 115

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             +   +             D        +  +  L   + 
Sbjct: 116 LLLLIFIVPQFAEMYQDNNQDLPFITKFLLVLSHSLTHYIW 156


>gi|18310825|ref|NP_562759.1| fimbrial assembly protein [Clostridium perfringens str. 13]
 gi|18145507|dbj|BAB81549.1| probable fimbrial assembly protein [Clostridium perfringens str.
           13]
          Length = 339

 Score = 43.6 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 53/144 (36%), Gaps = 9/144 (6%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESIS 70
           F D+       +   V++G+ +  ++ +I     D    E  +R+      G +LS++  
Sbjct: 4   FKDEASYICLNLSTYVKSGMSIGRSLDLIKNTVKDKKYKESLKRIERKVLNGEALSKAFK 63

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
                 P          +    +  GNL E L   +R +   K +K K+        +  
Sbjct: 64  EEGNLYP-----DLMKDMMRIGEESGNLEEVLEKCARNILAEKEIKNKIIKSLRYPVS-- 116

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNV 154
            ++  L   +   V +  P ++++
Sbjct: 117 -LLIGLIIMIFGYVTYILPQFVDM 139


>gi|326390769|ref|ZP_08212322.1| Type II secretion system F domain [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325993163|gb|EGD51602.1| Type II secretion system F domain [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 255

 Score = 43.6 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 2/146 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59
           +  + K R  KF  + P  +D+      A +P+ D   +    +    VR+   ++    
Sbjct: 97  ISSVKKDRQEKFRREMPEIVDLFELGAAADVPLEDIFLITAQSAQAKEVRNALTKLAAEY 156

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            +      ++ R +  + L E +  +  +    + G  L E L+ LS  L +    K   
Sbjct: 157 IMTKEKEVALKRFINEVNLPEANVLAMALLQGERTGRTL-EILSTLSTSLFNTAASKIAR 215

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVY 145
           Q  SME K  A +   +   V+  +Y
Sbjct: 216 QDKSMEYKVLAAVFFLMASIVTLYIY 241


>gi|258510602|ref|YP_003184036.1| hypothetical protein Aaci_0599 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477328|gb|ACV57647.1| hypothetical protein Aaci_0599 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 268

 Score = 43.6 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 52/146 (35%), Gaps = 5/146 (3%)

Query: 7   KRTAKFLDDFPNALD----IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           ++  +F DD    L     ++      G+   D + +++  +   +R    R  +     
Sbjct: 108 QKRKRFEDDLRFGLRRVKMLMASLYERGITPEDMLPLLISATDGALRQLLERAYQRMQTT 167

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAKVQA 121
            +L+++++ M +   L E+   ++V     +    +L   L  ++   R +     + +A
Sbjct: 168 DTLADALTWMAQETGLAEMRQLASVWIQAGRYEGTSLETQLKQMAVDERAQFLFNLEKRA 227

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFT 147
                     +I  +      LV   
Sbjct: 228 ERKRMSVLFEVIAFIALPSIFLVGIL 253


>gi|238062112|ref|ZP_04606821.1| type II secretion system protein [Micromonospora sp. ATCC 39149]
 gi|237883923|gb|EEP72751.1| type II secretion system protein [Micromonospora sp. ATCC 39149]
          Length = 288

 Score = 43.6 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 43/142 (30%), Gaps = 1/142 (0%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSE 67
             +F       LD++   + A      A+          V       +   Q    S  +
Sbjct: 145 RDEFRQAVCTYLDLVALQLSAAHGPVQALERAAAVCDGWVFDRIRESLRIAQMQMHSPWD 204

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
            +  +   + + E+     ++      G  + E L + +  LRD+       +A ++ ++
Sbjct: 205 ELRELADRIGIPELGDVGAIMRSSGSEGAQVHETLRSRADSLRDQIRTDNLARAEAVTSR 264

Query: 128 ASAWIIGSLPFCVSTLVYFTSP 149
                   +   +   VY    
Sbjct: 265 LDIPGSLLVFVLLGFAVYPFIA 286


>gi|168206103|ref|ZP_02632108.1| putative pilus biogenesis protein [Clostridium perfringens E str.
           JGS1987]
 gi|169343782|ref|ZP_02864781.1| putative pilus biogenesis protein [Clostridium perfringens C str.
           JGS1495]
 gi|169298342|gb|EDS80432.1| putative pilus biogenesis protein [Clostridium perfringens C str.
           JGS1495]
 gi|170662446|gb|EDT15129.1| putative pilus biogenesis protein [Clostridium perfringens E str.
           JGS1987]
          Length = 339

 Score = 43.6 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 55/144 (38%), Gaps = 9/144 (6%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESIS 70
           F D+       +   V++G+ +  ++ +I     D    E  RR+ +    G +LS++  
Sbjct: 4   FKDEASYICLNLSTYVKSGMSIGRSLDLIKNTVKDKKYKESLRRIEKKVLNGEALSKAFK 63

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
              +  P          +    +  GNL E L   +R +   K +K K+        +  
Sbjct: 64  EEGKLYP-----DLMKDMMRIGEESGNLEEVLEKCARNILAEKEIKNKIIKSLRYPVS-- 116

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNV 154
            ++  L   +   V +  P ++++
Sbjct: 117 -LLIGLIIMIFGYVTYILPQFVDM 139


>gi|313667330|ref|YP_004049731.1| Type II secretion system F domain [Oceanithermus profundus DSM
           14977]
 gi|313153961|gb|ADR37811.1| Type II secretion system F domain [Oceanithermus profundus DSM
           14977]
          Length = 406

 Score = 43.2 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 70/184 (38%), Gaps = 11/184 (5%)

Query: 5   IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           IK+R+      D+      + + V AG P+ +A+  I   +      E  ++        
Sbjct: 53  IKRRSGPLRLVDYVELYRGLAQMVSAGAPLLEALETIEEST------ERPQLAAVVRELH 106

Query: 64  SLSESISRMVRYMPLQE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            L    +++   M +              ++  G L +AL +++  +   K++ AKV+  
Sbjct: 107 DLVRGGTKLAEAMRMTGKFPEAHIATVTAAEESGKLDKALYSMATAVDQLKDLYAKVKEA 166

Query: 123 SMEAKASAWIIGSLPFCVSTLVYF-TSPGYMNVLINDPRGHMLLGVAAAFML--IGIMVM 179
                    +   + + + T +       +M + +    G   + +A A  L   G++++
Sbjct: 167 MTYPLLILALTVGISYYLLTRLVPKILGQFMEIGLQQVPGPTKVTMAVADFLNRYGLILV 226

Query: 180 RLMI 183
            L++
Sbjct: 227 VLIV 230


>gi|331089203|ref|ZP_08338105.1| hypothetical protein HMPREF1025_01688 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330405755|gb|EGG85284.1| hypothetical protein HMPREF1025_01688 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 425

 Score = 43.2 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 46/156 (29%), Gaps = 17/156 (10%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR----------------SEFR 53
            +   D+P  ++     +++G+ +  A   I G+     +                 E  
Sbjct: 265 REMKLDYPQIINKFNLYIKSGMTIRKAWFKIAGEYEKDQKEKEQISAKACGRKKAYEEMV 324

Query: 54  RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDR 112
            V+     G S  E          L E   F  ++S    +    L+E L   +    ++
Sbjct: 325 NVMYKISGGASEGECYEEYGIRCNLSEYRKFGMMLSQNLRKGTRGLTELLEREAEDAFEQ 384

Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
           +   AK        K    +   L    + ++    
Sbjct: 385 RKNLAKKAGEEAGTKLMIPLFLMLIIVFAIVIVPAF 420


>gi|307721765|ref|YP_003892905.1| hypothetical protein Saut_1849 [Sulfurimonas autotrophica DSM
           16294]
 gi|306979858|gb|ADN09893.1| hypothetical protein Saut_1849 [Sulfurimonas autotrophica DSM
           16294]
          Length = 278

 Score = 43.2 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 58/150 (38%), Gaps = 5/150 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS----DPVRSEFRRVI 56
           ++  IK R  +  +D P  +D+++  +  G  +++A+  +  +        +  E ++  
Sbjct: 119 LQEQIKARIKRIENDLPIFIDLLIIILEGGGGLNNAIDKVTTEGESVLGPDLLEESKKFK 178

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
                  S   + + +V       ++     + +  + G  +     N ++ L+  + + 
Sbjct: 179 NEFITYSS-DIAYTNLVNRTGSDSIATIVGFMRLSEETGIGVKSIFENQAQELKSMEMLN 237

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
            + +A +M    +  +   +   V  ++ F
Sbjct: 238 IEKKAATMNIGITFVMFIFILPAVIAMIAF 267


>gi|220910052|ref|YP_002485363.1| type II secretion system protein [Cyanothece sp. PCC 7425]
 gi|219866663|gb|ACL47002.1| type II secretion system protein [Cyanothece sp. PCC 7425]
          Length = 406

 Score = 43.2 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 43/134 (32%), Gaps = 7/134 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
                    R+G+P+  ++ ++   + + + S       +    G  LS ++ R      
Sbjct: 275 FCRTFGSLSRSGVPILTSLEIVSETAGNQIISNAINEARKEVQSGGMLSTALQR------ 328

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +     +T +    +  G L + L  ++    D      K     ME    A + G + 
Sbjct: 329 EKIFPTLATQMISVGEETGELDKMLMKVADFYEDEVEQAVKALTSIMEPIMIAVLGGMVG 388

Query: 138 FCVSTLVYFTSPGY 151
             +  +       +
Sbjct: 389 SILVAMYLPMFKIF 402


>gi|182625667|ref|ZP_02953436.1| putative pilus biogenesis protein [Clostridium perfringens D str.
           JGS1721]
 gi|177909069|gb|EDT71544.1| putative pilus biogenesis protein [Clostridium perfringens D str.
           JGS1721]
          Length = 339

 Score = 43.2 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 55/144 (38%), Gaps = 9/144 (6%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESIS 70
           F D+       +   V++G+P+  ++ +I     D    E  +R+ +    G +LS++  
Sbjct: 4   FKDEASYICLNLSTYVKSGMPIGRSLDLIKNTVKDKKYKESLKRIEKKVLNGEALSKAFK 63

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
                 P          +    +  GNL E L   +R +   K +K K+        +  
Sbjct: 64  EEGNLYPDLMKD-----MMKIGEESGNLEEVLEKCARNILAEKEIKNKIIKSLRYPVS-- 116

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNV 154
            ++  L   +   V +  P ++++
Sbjct: 117 -LLIGLIIMIFGYVTYILPQFVDM 139


>gi|225017405|ref|ZP_03706597.1| hypothetical protein CLOSTMETH_01331 [Clostridium methylpentosum
           DSM 5476]
 gi|224949815|gb|EEG31024.1| hypothetical protein CLOSTMETH_01331 [Clostridium methylpentosum
           DSM 5476]
          Length = 329

 Score = 43.2 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/154 (11%), Positives = 52/154 (33%), Gaps = 2/154 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           ++++R  +   + P  ++ I + +RA   V + +      +   ++ E    I       
Sbjct: 176 IVQQRREEIEAELPRFVNTIEQELRASRDVLNILKSYQRNAGHAMKRELEITIADMAS-G 234

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           +   +++RM   +    +S     +    +    +      LS   +  +  K K++A+ 
Sbjct: 235 NEENALTRMESRIGSTMLSDVVRGLISVKRGDNGIM-YFQMLSMTFKQLELQKLKLEAMK 293

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
              K   +    L   +   +       +    +
Sbjct: 294 QPGKMRKYSFMLLGCFLLMYLGVLGYVVLEAFGD 327


>gi|302864763|ref|YP_003833400.1| Type II secretion system F domain-containing protein
           [Micromonospora aurantiaca ATCC 27029]
 gi|315501057|ref|YP_004079944.1| type ii secretion system f domain protein [Micromonospora sp. L5]
 gi|302567622|gb|ADL43824.1| Type II secretion system F domain [Micromonospora aurantiaca ATCC
           27029]
 gi|315407676|gb|ADU05793.1| Type II secretion system F domain protein [Micromonospora sp. L5]
          Length = 287

 Score = 43.2 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 44/140 (31%), Gaps = 1/140 (0%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSE 67
             +F       LD++   + A      ++          V    R  +    L + S  +
Sbjct: 144 RDEFRQAVCTYLDLVALQLSAAHGPVQSLERAAAVCDGWVFDRIREALRLAQLQMHSPWD 203

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
            +  +   + + E+     ++      G  + E L + +  LRD+       +A  + +K
Sbjct: 204 ELQELAERIGIPELGDVGAIMRSSGSEGAQVHETLRSRADSLRDQIRTDNLARAEGVTSK 263

Query: 128 ASAWIIGSLPFCVSTLVYFT 147
                   +   +   VY  
Sbjct: 264 LDIPGSLLVFVLLGFAVYPF 283


>gi|238922470|ref|YP_002935983.1| hypothetical protein EUBREC_0044 [Eubacterium rectale ATCC 33656]
 gi|238874142|gb|ACR73849.1| Hypothetical protein EUBREC_0044 [Eubacterium rectale ATCC 33656]
          Length = 408

 Score = 43.2 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/121 (13%), Positives = 36/121 (29%), Gaps = 11/121 (9%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSD---------PVRSEFRRV 55
           K+R  +   ++P  +  +   + +G+ V  A   I      +         P   E    
Sbjct: 250 KERNIQLQLEYPEIVSKMAVLMGSGMTVEQAWNRITARYLDERKNNDKNIMPAYEEMLVT 309

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKN 114
                 G++  ++ +     + L        +I          + E L   S    D + 
Sbjct: 310 EREISDGVTGRKAYAGFAERVKLPCYQKLVRIILQSIHKGSKGVCEMLEKESEDAFDERR 369

Query: 115 M 115
           +
Sbjct: 370 L 370


>gi|311112132|ref|YP_003983354.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
 gi|310943626|gb|ADP39920.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
          Length = 474

 Score = 43.2 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 45/140 (32%), Gaps = 6/140 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L+++   +RAGL ++ A+  +               +E   L L++S            
Sbjct: 336 MLELLAAQLRAGLGLTGALQALGRAL-AHEERAISDALEHITLTLTVSADWQAAWDGYDH 394

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME-----AKASAWII 133
             +   + +++     G   S  L + +   R  +   A+  +  +            + 
Sbjct: 395 PLLRELARILAPAYSAGTPSSALLRHCAATYRLEERRAAERASAKLAVALVLPLGLCSLP 454

Query: 134 GSLPFCVSTLVYFTSPGYMN 153
             +   +  +V    PG + 
Sbjct: 455 AFICCGIIPIVISLLPGLLA 474


>gi|239980168|ref|ZP_04702692.1| integral membrane protein [Streptomyces albus J1074]
 gi|291452022|ref|ZP_06591412.1| integral membrane protein [Streptomyces albus J1074]
 gi|291354971|gb|EFE81873.1| integral membrane protein [Streptomyces albus J1074]
          Length = 307

 Score = 43.2 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 58/137 (42%), Gaps = 4/137 (2%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESISRMVRYMPL 78
           LD++  S+  G  + +A+      S        R  +    +   S  +++  +   + +
Sbjct: 172 LDLVSMSLAGGRGLPEALMAAAEVSDGWAAKRIRNALNDARITGHSQWQALGELGEELGI 231

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +E+   +  +++ +  G  + E+LA+ +  +R R+  + +    +   K+ + ++  L  
Sbjct: 232 EELKDLAASLALVADDGAKVRESLASRAETMRHREMAEIE---GAAGEKSQSMLVAQLLL 288

Query: 139 CVSTLVYFTSPGYMNVL 155
           C   LV+   P  M V 
Sbjct: 289 CAGFLVFLIFPAAMRVF 305


>gi|156937801|ref|YP_001435597.1| type II secretion system protein [Ignicoccus hospitalis KIN4/I]
 gi|156566785|gb|ABU82190.1| type II secretion system protein [Ignicoccus hospitalis KIN4/I]
          Length = 311

 Score = 43.2 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 50/147 (34%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R    + + P  L  +  +VR+G+ V+ A   I  +    +    RR+    +L     
Sbjct: 72  RRVESVITNTPLMLQDLAVTVRSGVKVNAAFVEISDRDYGALSPYVRRIASMIYLLGLDL 131

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
               R+V     +E   +   I    + GG   E L   S + R  +  + + +      
Sbjct: 132 LDAIRLVIRELPKETRKYFYFIEEAYESGGRAMEVLDKASELARRIREFELEREKTLKNQ 191

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMN 153
                    +    + ++Y+ +     
Sbjct: 192 GFIILFSVLIFVATAAILYYLAVQMYA 218


>gi|157369021|ref|YP_001477010.1| type IV pilin biogenesis protein [Serratia proteamaculans 568]
 gi|157320785|gb|ABV39882.1| type II secretion system protein [Serratia proteamaculans 568]
          Length = 399

 Score = 43.2 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 42/141 (29%), Gaps = 6/141 (4%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVR 74
                  +   ++AGLP+   + ++  +          R + E    G   SE I+    
Sbjct: 61  LIQFTRQLATLLQAGLPLVSGLQLLAAEHPSAAWRCLLRDISEQVRQGQPFSEVIA---- 116

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                        +    +L G+L +    L++    ++ ++ KV            +  
Sbjct: 117 -GQHAIFPLIYRQLIAIGELTGHLEQCCLQLAQQQEAQQKLQKKVVKALRYPLFICAVAL 175

Query: 135 SLPFCVSTLVYFTSPGYMNVL 155
            +   +  +V     G     
Sbjct: 176 LVSILMLVMVLPEFAGVYQSF 196


>gi|153815435|ref|ZP_01968103.1| hypothetical protein RUMTOR_01670 [Ruminococcus torques ATCC 27756]
 gi|145847294|gb|EDK24212.1| hypothetical protein RUMTOR_01670 [Ruminococcus torques ATCC 27756]
          Length = 425

 Score = 43.2 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 46/156 (29%), Gaps = 17/156 (10%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR----------------SEFR 53
            +   D+P  ++     +++G+ +  A   I G+     +                 E  
Sbjct: 265 REMKLDYPQIINKFNLYIKSGMTIRKAWFKIAGEYEKDQKEKEQISAKACGRKKAYEEMV 324

Query: 54  RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDR 112
            V+     G S  E          L E   F  ++S    +    L+E L   +    ++
Sbjct: 325 NVMYKISGGASEGECYEEYGIRCNLSEYRKFGMMLSQNLRKGTRGLTELLEREAEDAFEQ 384

Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
           +   AK        K    +   L    + ++    
Sbjct: 385 RKNLAKKAGEEAGTKLMIPLFLMLIIVFAIVIVPAF 420


>gi|78484987|ref|YP_390912.1| type II secretion system protein [Thiomicrospira crunogena XCL-2]
 gi|78363273|gb|ABB41238.1| type II secretion system protein F homolog [Thiomicrospira
           crunogena XCL-2]
          Length = 401

 Score = 43.2 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 64/180 (35%), Gaps = 12/180 (6%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65
           KR      D       + + ++AG+P+ D +  +     +  V      + ++   G S 
Sbjct: 54  KRRKVTRRDVIVITSQLRQLLKAGVPLMDILDDLRRTYENEAVCEILSSIYKSMEGGESF 113

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S     +               +    +  G L + L NL   ++  +++ +K + + + 
Sbjct: 114 S-----LALKNYEAVFGKVYVSLVAVGEKTGQLDQVLENLENTMKWEESLASKAKKVMIY 168

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA------FMLIGIMVM 179
               A ++ ++   +   V      ++N +        +  +A +       + IG++++
Sbjct: 169 PAIVATVVLAVVVLLMVFVVPELLSFINEMDGSLGFATVSLIATSHFIREYIVFIGLLLI 228


>gi|283956846|ref|ZP_06374319.1| general secretory pathway protein F [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791572|gb|EFC30368.1| general secretory pathway protein F [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 393

 Score = 43.2 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 55/181 (30%), Gaps = 10/181 (5%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
                ++F      +      GL V +A+  +            +++++   L  +L+++
Sbjct: 50  QRLKDENFILFFKELALLCEVGLSVQEAIREL---YLMHSCKIMKKILDNLILAQNLNQA 106

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                       ++     +   ++  G +SE    +S++       + +++        
Sbjct: 107 FENA-----NFGLNRAELALIKTAEKTGKISEVFNQISKLREKSLETQKQLKKAFRYPTL 161

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMINFD 186
               I      +   V          L        H++L +       GI  + L + F 
Sbjct: 162 VFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFVTHVMLEIYNFLDGYGIFCILLFVIFI 221

Query: 187 V 187
           V
Sbjct: 222 V 222


>gi|330465091|ref|YP_004402834.1| type II secretion system protein [Verrucosispora maris AB-18-032]
 gi|328808062|gb|AEB42234.1| type II secretion system protein [Verrucosispora maris AB-18-032]
          Length = 287

 Score = 43.2 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/145 (10%), Positives = 44/145 (30%), Gaps = 1/145 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             +    +F       LD++   + A      ++          V       +    + +
Sbjct: 139 RAEAAREEFRQAVCTYLDLVALQLSAAHGPVQSLERAAAICDGWVFERISEALRMAQMQM 198

Query: 64  -SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S  + +  +   + + E+     ++      G  + E L + +  LRD+       +A 
Sbjct: 199 HSPWDELRDLADRIGIPELGDVGAIMQSSGSEGAQVHETLRSRADSLRDQIRTDNLARAE 258

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFT 147
            + ++        +   +   +Y  
Sbjct: 259 GVTSRLDIPGALLVFVLLGFAIYPF 283


>gi|317500897|ref|ZP_07959108.1| hypothetical protein HMPREF1026_01051 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316897695|gb|EFV19755.1| hypothetical protein HMPREF1026_01051 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 425

 Score = 43.2 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 46/156 (29%), Gaps = 17/156 (10%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR----------------SEFR 53
            +   D+P  ++     +++G+ +  A   I G+     +                 E  
Sbjct: 265 REMKLDYPQIINKFNLYIKSGMTIRKAWFKIAGEYEKDQKEKEQISAKACGRKKAYEEMV 324

Query: 54  RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDR 112
            V+     G S  E          L E   F  ++S    +    L+E L   +    ++
Sbjct: 325 NVMYKISGGASEGECYEEYGIRCNLSEYRKFGMMLSQNLRKGTRGLTELLEREAEDAFEQ 384

Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
           +   AK        K    +   L    + ++    
Sbjct: 385 RKNLAKKAGEEAGTKLMIPLFLMLIIVFAIVIVPAF 420


>gi|254246405|ref|ZP_04939726.1| Type II secretion system protein [Burkholderia cenocepacia PC184]
 gi|124871181|gb|EAY62897.1| Type II secretion system protein [Burkholderia cenocepacia PC184]
          Length = 404

 Score = 43.2 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 49/159 (30%), Gaps = 13/159 (8%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV---IETQHLGLSLSESISRMVRYMP 77
             +   ++AGLP++ +  ++V  S+     +       +    L  SL    S+  R +P
Sbjct: 71  RQLASLLQAGLPLAPSFEMLVRTSTREGVPDPTGSPQNLRRAALHRSLPRYPSKFGRCIP 130

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +  S  S  + +           L  ++           K++A      A      ++ 
Sbjct: 131 SRSRSAGSGSLGI----------VLTRIAEHRERADAQWRKLRAALAYPAAVILFALAIS 180

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
             +   V  T     +             +A     +G+
Sbjct: 181 AALMVWVVPTFRQIFDGFGAALPAPTRALLALYRRAVGM 219


>gi|238853651|ref|ZP_04644019.1| type II secretory pathway/competence component [Lactobacillus
           gasseri 202-4]
 gi|282851508|ref|ZP_06260873.1| type II secretion system F domain protein [Lactobacillus gasseri
           224-1]
 gi|238833689|gb|EEQ25958.1| type II secretory pathway/competence component [Lactobacillus
           gasseri 202-4]
 gi|282557476|gb|EFB63073.1| type II secretion system F domain protein [Lactobacillus gasseri
           224-1]
          Length = 326

 Score = 43.2 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 58/167 (34%), Gaps = 14/167 (8%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            +D + +++  G  ++ ++ ++    S           + +           ++   +  
Sbjct: 14  FIDYLRQALINGYSLNASLKLLPKIWSGDSNQLVYISKQVEEG--------RQLGDVLHE 65

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
              S         + + GNL   L  LS+++R +     K++           ++ +L  
Sbjct: 66  VGFSSTLAAQINMAIIDGNLLSCLDQLSKLIRLKNKQLKKLRGELAYPALLIGMMVTLLI 125

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           C+ T +            ND   +++LG     ++IG   +  +I  
Sbjct: 126 CMQTFLKTEMSD------NDWTSNVMLGGLVMLVIIGAFFISKVIRL 166


>gi|307132569|ref|YP_003884585.1| type 4 fimbrial assembly protein pilC [Dickeya dadantii 3937]
 gi|306530098|gb|ADN00029.1| Type 4 fimbrial assembly protein pilC [Dickeya dadantii 3937]
          Length = 401

 Score = 43.2 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 60/183 (32%), Gaps = 21/183 (11%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
                +  +   ++AGLP+ DA+ ++  Q      R   + + +    G +LSE ++   
Sbjct: 60  QLSVIIRQLATLLQAGLPLLDALDLLGRQHEKAGWRCLLQEIRQQVAQGRALSEVLADYP 119

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
              P+       + +    +L G L +  A L+    +++ +  KV            + 
Sbjct: 120 AAFPM-----MCSSLVAVGELTGKLDDCCARLANYQENQRQLTGKVIKALRYPAFVIAVG 174

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGH---------------MLLGVAAAFMLIGIMV 178
             +   + TLV     G                           MLL      +L+G   
Sbjct: 175 LLVALLMLTLVLPEFAGLYASFDAPLPWLTRMMLRLSDALSRHGMLLVTLPVVILLGYRQ 234

Query: 179 MRL 181
           +R 
Sbjct: 235 IRR 237


>gi|261495427|ref|ZP_05991875.1| pili/fimbriae biogenesis protein [Mannheimia haemolytica serotype
           A2 str. OVINE]
 gi|261308932|gb|EEY10187.1| pili/fimbriae biogenesis protein [Mannheimia haemolytica serotype
           A2 str. OVINE]
          Length = 369

 Score = 43.2 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 53/141 (37%), Gaps = 6/141 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRM 72
           ++  + L  +   V + +P+  A+++++    +     +   +I+    G + S+S+ ++
Sbjct: 29  EEVNSLLSQLALLVNSAMPLKQALSMLLQNCRNIRLYLWLNELIQHIERGYAFSQSLEKL 88

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             ++  QE       +    +  G L   L NL+      + +  KV+ +         I
Sbjct: 89  GEFVTNQE-----IQLIKMGEQSGKLGIMLTNLAESRAKLEKLAKKVKKILFYPVIVLLI 143

Query: 133 IGSLPFCVSTLVYFTSPGYMN 153
             +L   +  L+         
Sbjct: 144 SLALSIGLLVLIVPQFAQLYG 164


>gi|153953831|ref|YP_001394596.1| ExeF4 [Clostridium kluyveri DSM 555]
 gi|219854447|ref|YP_002471569.1| hypothetical protein CKR_1104 [Clostridium kluyveri NBRC 12016]
 gi|146346712|gb|EDK33248.1| ExeF4 [Clostridium kluyveri DSM 555]
 gi|219568171|dbj|BAH06155.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 328

 Score = 43.2 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 46/145 (31%), Gaps = 7/145 (4%)

Query: 26  SVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
            +  G+P+  A  ++  Q +        + ++   +  +                   F 
Sbjct: 1   MLNTGIPLFKAFEILETQYNKSRLKVALKTVKEDVIKGN----SIHESMKKVKNIFPQFM 56

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
                  +  G L E L  LS     + N+ A V+           I+ +    +  L+ 
Sbjct: 57  IETVKIGEEAGRLEEILKRLSSYYEKQYNIMAAVKNALTYPLL---ILITSIIVMIYLMT 113

Query: 146 FTSPGYMNVLINDPRGHMLLGVAAA 170
              P +++++++      +L  A  
Sbjct: 114 KIIPQFVDIILSAGGEVPILTKAVI 138


>gi|238787295|ref|ZP_04631094.1| General secretion pathway protein [Yersinia frederiksenii ATCC
           33641]
 gi|238724557|gb|EEQ16198.1| General secretion pathway protein [Yersinia frederiksenii ATCC
           33641]
          Length = 383

 Score = 43.2 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 55/180 (30%), Gaps = 12/180 (6%)

Query: 1   MKHLIKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIET 58
           +   + K   +    D       +   V A +P+ + + ++  QS    V++    +   
Sbjct: 36  LTTRVTKYFNRVSRVDLVLMTRQMSILVNAAIPLVEVLEIVEKQSVKGNVKNMIHEIRNK 95

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G S S+S+            +     +    ++ G+L   L+ L+  +     ++ K
Sbjct: 96  VIEGHSFSDSLLLYSN-----VFNTLYRAMITAGEVSGHLDIVLSKLAEHIEQTYRVQKK 150

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +    +       I   +   +  L+    P  +           L       M+    V
Sbjct: 151 IIQSLIYPGFLILISIGV---IVVLLSVVIPSLIEQF--SFYEQALPLSTRVLMVSSYWV 205


>gi|323702225|ref|ZP_08113891.1| hypothetical protein DesniDRAFT_1103 [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532715|gb|EGB22588.1| hypothetical protein DesniDRAFT_1103 [Desulfotomaculum nigrificans
           DSM 574]
          Length = 260

 Score = 42.8 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 58/182 (31%), Gaps = 1/182 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  + ++R  +  +   + +         G   ++ ++ +  +  +P+ SE   ++  +H
Sbjct: 74  INLVREERIRQVREKAKDFVMAASGLYSTGQSDTEVISTMSKRLPEPLASELHEMVVQRH 133

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +   +S                F +    +++        A AN    L     M++K+ 
Sbjct: 134 MNDQVSYPSMLRRLGEKYNVPEFAAASAIIEAGDIVGGPVAKANGLMKLGAAIRMRSKLL 193

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +A     I       V  L           L     G  LL +  AF +  I +  
Sbjct: 194 LERKKANLEPKIASMFVILVLGLGLMLDITIWRDLYQQS-GKFLLAIGLAFEIALIFIAI 252

Query: 181 LM 182
            +
Sbjct: 253 KL 254


>gi|115351485|ref|YP_773324.1| type II secretion system protein [Burkholderia ambifaria AMMD]
 gi|115281473|gb|ABI86990.1| type II secretion system protein [Burkholderia ambifaria AMMD]
          Length = 393

 Score = 42.8 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 55/171 (32%), Gaps = 12/171 (7%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQHLGLSLSESISRM 72
                L  +   + AGL + +A+  +  ++      +    R++     G  LS++++R 
Sbjct: 56  ALALFLQELSTLLDAGLVLFEALEALRDKADSGKDAKYVIDRLLAVMVEGQPLSKALARQ 115

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P              S+  G L   L    +     + ++ +V    +       +
Sbjct: 116 PAIFPP-----LLVATVESSEGSGQLPVVLKRYQQYEVRIEQVRKRVTGALIYPAVVIGV 170

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIN-DPRGHMLLGVAAAF----MLIGIMV 178
             ++   ++  V          L    P  H +L  A       M +G+ V
Sbjct: 171 GIAILLFMAFFVIPRFAVVFESLATLPPTAHAMLWWANLLRENGMAVGLAV 221


>gi|218280897|ref|ZP_03487515.1| hypothetical protein EUBIFOR_00073 [Eubacterium biforme DSM 3989]
 gi|218217784|gb|EEC91322.1| hypothetical protein EUBIFOR_00073 [Eubacterium biforme DSM 3989]
          Length = 332

 Score = 42.8 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 63/165 (38%), Gaps = 10/165 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +  ++  GL V D + ++VG     V    +++ +    G S ++++         
Sbjct: 10  FTSELALAISNGLQVEDGLKMLVG-FDADVSICAKKLEDIMKQGYSFTDALKE------S 62

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +E   +   + V  Q  GNL      LS     +K +  ++Q           +I  +  
Sbjct: 63  KEFDEYMIQMVVVGQSIGNLDVVFKELSTYYARQKELNYQIQDAITYPF---VLILMMFV 119

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            V+TL++   P + N+L        L+  A     IG  ++  ++
Sbjct: 120 IVATLIFKVFPIFENILSQMSMSLSLMYSARILSYIGFFILLFIL 164


>gi|168210794|ref|ZP_02636419.1| putative pilus biogenesis protein [Clostridium perfringens B str.
           ATCC 3626]
 gi|170711113|gb|EDT23295.1| putative pilus biogenesis protein [Clostridium perfringens B str.
           ATCC 3626]
          Length = 339

 Score = 42.8 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 55/144 (38%), Gaps = 9/144 (6%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESIS 70
           F D+       +   V++G+P+  ++ +I     D    E  +R+ +    G +LS++  
Sbjct: 4   FKDEASYICLNLSTYVKSGMPIGRSLDLIKNTVKDKKYKESLKRIEKKVLNGEALSKAFK 63

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
                 P          +    +  GNL E L   +R +   K +K K+        +  
Sbjct: 64  EEGNLYP-----DLMKDMMKIGEESGNLEEVLEKCARNILAEKEIKNKIIKSLRYPIS-- 116

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNV 154
            ++  L   +   V +  P ++++
Sbjct: 117 -LLIGLIIMIFGYVTYILPQFVDM 139


>gi|225570285|ref|ZP_03779310.1| hypothetical protein CLOHYLEM_06381 [Clostridium hylemonae DSM
           15053]
 gi|225160817|gb|EEG73436.1| hypothetical protein CLOHYLEM_06381 [Clostridium hylemonae DSM
           15053]
          Length = 349

 Score = 42.8 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/149 (10%), Positives = 44/149 (29%), Gaps = 5/149 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             +       +   +++G+   + V +++ +S  P   E   +   Q            +
Sbjct: 11  NMEISAFCSQMAMILQSGISSVEGVTLMLEESKSP--DEQELLTNMQKTLFETGSFYEAL 68

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           V      +   +   +    +  G L + + +LS        +   V+           +
Sbjct: 69  VSTCSFPD---YMLQMVNIGEQTGKLDDVMKSLSEHYDREAAIAQSVKNAVTYPLIMICM 125

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           +  +   + T V          L ++  G
Sbjct: 126 MLLVIVVLITKVMPIFNQVFRQLGSEMTG 154


>gi|168214417|ref|ZP_02640042.1| putative pilus biogenesis protein [Clostridium perfringens CPE str.
           F4969]
 gi|170714108|gb|EDT26290.1| putative pilus biogenesis protein [Clostridium perfringens CPE str.
           F4969]
          Length = 339

 Score = 42.8 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 55/144 (38%), Gaps = 9/144 (6%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESIS 70
           F D+       +   V++G+P+  ++ +I     D    E  +R+ +    G +LS++  
Sbjct: 4   FKDEASYICLNLSTYVKSGMPIGRSLDLIKNTVKDKKYKESLKRIEKKVLNGEALSKAFK 63

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
                 P          +    +  GNL E L   +R +   K +K K+        +  
Sbjct: 64  EEGNLYP-----DLMKDMMKIGEESGNLEEVLEKCARNILAEKEIKNKIIKSLRYPVS-- 116

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNV 154
            ++  L   +   V +  P ++++
Sbjct: 117 -LLIGLIIMIFGYVTYILPQFVDM 139


>gi|260102546|ref|ZP_05752783.1| competence protein [Lactobacillus helveticus DSM 20075]
 gi|260083640|gb|EEW67760.1| competence protein [Lactobacillus helveticus DSM 20075]
          Length = 330

 Score = 42.8 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 63/178 (35%), Gaps = 14/178 (7%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KK      +     LD +  S+  G  + +++ ++        +   +++++    G S 
Sbjct: 5   KKDRLNSEEQLV-FLDYLKHSLENGFSLINSIELMPVLWPKK-KELMQKLVKRMKEGNSF 62

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S  + ++         S  +      +   GNL E L  L+ + R ++    K++A    
Sbjct: 63  SVELIQLG-------FSKTTVTQVNLALQQGNLIECLNQLAILSRLKQEQVKKLRAELSY 115

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
               A ++  L   + + +                G +++      +L GI  +  +I
Sbjct: 116 PFVLAIMMVILLVFMQSFISTQFNDRSEY-----SGDLIMLGLIGAVLAGIYFLARII 168


>gi|149182919|ref|ZP_01861377.1| comG operon protein 2 [Bacillus sp. SG-1]
 gi|148849368|gb|EDL63560.1| comG operon protein 2 [Bacillus sp. SG-1]
          Length = 345

 Score = 42.8 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 44/131 (33%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77
               +   + +G+ ++ A+  +  QS  P+  E   R+I+   +G S  ES+     +  
Sbjct: 214 FSREMSYLLNSGMSINQALTEVGSQSYRPLFKELAERMIQDLRIGKSFPESVEYFGLFTD 273

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G L   L   S+   +   +  K     ++     +I   + 
Sbjct: 274 G------LIEVIRHGERRGQLPRELFTYSQFCMETLEVSGKKLLSVIQPAVFLFIGVFIL 327

Query: 138 FCVSTLVYFTS 148
               +++    
Sbjct: 328 LIYFSIMIPLF 338



 Score = 40.1 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 57/163 (34%), Gaps = 7/163 (4%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  K + D    L  +   +  G  +++A+  +            ++++     G SLS+
Sbjct: 4   RVKKTIKDKGAFLKRLGELLEIGYSLTEAIEFVFIGHYRQQDKLKQKMLFHLQNGSSLSD 63

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           S+  +   +               ++  G ++E L +    L  R+  +  +Q +     
Sbjct: 64  SLKYLGLPLQ-------VCSQIYFAEKHGRMAETLISAGEYLIARQKDRQALQKVMTYPI 116

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
              +I+  +   + ++++       + L   P   + + +   
Sbjct: 117 VLLFILVGVMILLKSVLFPQFHSLYSSLGYTPENRIGIILVFI 159


>gi|154508104|ref|ZP_02043746.1| hypothetical protein ACTODO_00597 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797738|gb|EDN80158.1| hypothetical protein ACTODO_00597 [Actinomyces odontolyticus ATCC
           17982]
          Length = 425

 Score = 42.8 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 53/181 (29%), Gaps = 14/181 (7%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVI-----------VGQSSDPVRSEFRRVIETQHLG 62
            +    +  +   +RAG P S A  +            V  S   V  E+ R        
Sbjct: 102 RELSLLVAEVATRLRAGAPTSLAWGLALARIDAGGSVGVDDSYPAVLDEWARAPTRWRSL 161

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             +  +       +     +  +        LG  L++ L  +   + D + ++   +  
Sbjct: 162 RRVERAPGVAASRV---SAASVALACRFSHDLGAPLADVLDAIGSAIDDAQALEEARRVA 218

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           +     SA ++ +LP                  +    G M   V  A    G+   R +
Sbjct: 219 AAGPLMSARVLAALPLVGIACALALGASPWQFYMGGAAGRMCAFVGVAAWAAGVASCRRI 278

Query: 183 I 183
           +
Sbjct: 279 L 279



 Score = 36.6 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 42/143 (29%), Gaps = 10/143 (6%)

Query: 3   HLIKKRTAKFLDDF--PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
             I  R  +  +      A D++  ++  G  +  A+  +   S             +  
Sbjct: 276 RRILARCRRVEEGIDGALACDLVASALACGAAIPRALDALADAS---TTEALTWAAASLR 332

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG + +++      +            +      G +    LA  +   R  + + AK Q
Sbjct: 333 LGATWADAWEDTPEWSHPLRD-----ALEASWTSGTSPETLLARSAAWERRSRLVDAKAQ 387

Query: 121 ALSMEAKASAWIIGSLPFCVSTL 143
           A  +  +    +         +L
Sbjct: 388 AEELSVRLVGPLGVFFLPAFLSL 410


>gi|90417995|ref|ZP_01225907.1| possible general secretory pathway protein [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337667|gb|EAS51318.1| possible general secretory pathway protein [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 404

 Score = 42.8 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 47/129 (36%), Gaps = 6/129 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
             + +   + AG+ +  A+ +I    +   +    R + +   +G SL+E+        P
Sbjct: 72  VTEDLSALLTAGVALDRAILIISQTATKPVIAVLLRDLHQAISMGQSLAEATGNHPTAFP 131

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     I   ++  G L E LA L+R  +  + ++ ++ +        A     + 
Sbjct: 132 -----ANYVKIVQVAEAAGTLPETLAVLARERQRSEELRRRISSALAYPGFLAAAAVGVL 186

Query: 138 FCVSTLVYF 146
             V  +V  
Sbjct: 187 AFVLAVVIP 195


>gi|222083143|ref|YP_002542508.1| cytochrome biogenesis protein [Agrobacterium radiobacter K84]
 gi|221727822|gb|ACM30911.1| cytochrome biogenesis protein [Agrobacterium radiobacter K84]
          Length = 385

 Score = 42.8 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 12/140 (8%), Positives = 39/140 (27%), Gaps = 5/140 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            +       I   + AGL +  A+  +     +        + +     L+  ++ S   
Sbjct: 46  ANLQRFFADIAMLMDAGLGLDRALKAVAADQGN---KANCMLAKELTERLASGKAPSEAF 102

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R +           +    +  G L      ++  L  ++  ++++            ++
Sbjct: 103 RAIGGAGQD--IAALIASGEQTGKLPVIFGVIANNLERQRAQRSQIAEAIAYPAFLILMM 160

Query: 134 GSLPFCVSTLVYFTSPGYMN 153
            +    V+  +         
Sbjct: 161 FAALLIVTFFLVPAILPIFE 180


>gi|293391603|ref|ZP_06635937.1| putative type IV pilin secretion protein [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|22001226|gb|AAM88346.1|AF521703_3 PilC [Aggregatibacter actinomycetemcomitans]
 gi|290952137|gb|EFE02256.1| putative type IV pilin secretion protein [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 407

 Score = 42.8 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 66/165 (40%), Gaps = 9/165 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV-IETQHLGLSLSESISR 71
             D    L  +   +RA +P+ +++ +++   ++   + + R  ++    GL+ S+++ +
Sbjct: 57  NADICTLLSQLATLLRAAVPLKNSLQILLQNCTNIALNRWLRCLLQEIESGLAFSQALEQ 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              Y+  QE       +    ++ G L+     +++  +    ++ K+Q + +       
Sbjct: 117 QGLYLTYQER-----QLIQVGEMTGKLAAVCHEIAQHKQQALALQRKIQKILLYPLL--- 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
           ++G      + L+ F  P +  +  N      +       +  G+
Sbjct: 169 VLGISLILTALLLLFIVPQFAAMYDNSNAQLPVFTQVLLALSQGL 213



 Score = 38.2 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 14/145 (9%), Positives = 45/145 (31%), Gaps = 5/145 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR----VIETQHLGL 63
           R  +           +   ++AG+P++ A+   + +         ++    +I      L
Sbjct: 257 RIVQLSR-LVGFSRSLFLMLQAGIPLNQALQSFLPKQQSWQSKPQQQGDWLLITEVQSAL 315

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              +        +  Q     +  +    +  G L + L  ++   + + + +  + +  
Sbjct: 316 HWIQQGYPFSASVSGQIFPPAAQQMLQVGEQSGQLPKMLQFIANDHQQQLDHQIDLLSQM 375

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTS 148
           +E      I G +   +  +     
Sbjct: 376 LEPLLMVIIGGLIGLIMLGMYLPIF 400


>gi|168215471|ref|ZP_02641096.1| putative pilus biogenesis protein [Clostridium perfringens NCTC
           8239]
 gi|182382167|gb|EDT79646.1| putative pilus biogenesis protein [Clostridium perfringens NCTC
           8239]
          Length = 339

 Score = 42.8 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 55/144 (38%), Gaps = 9/144 (6%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESIS 70
           F D+       +   V++G+P+  ++ +I     D    E  +R+ +    G +LS++  
Sbjct: 4   FKDEASYICLNLSTYVKSGMPIGRSLDLIKNTVKDKKYKESLKRIEKKVLNGEALSKAFK 63

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
                 P          +    +  GNL E L   +R +   K +K K+        +  
Sbjct: 64  EEGNLYP-----DLMKDMMKIGEESGNLEEVLEKCARNILAEKEIKNKIIKSLRYPVS-- 116

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNV 154
            ++  L   +   V +  P ++++
Sbjct: 117 -LLIGLIIMIFGYVTYILPQFVDM 139


>gi|110798866|ref|YP_696526.1| putative pilus biogenesis protein [Clostridium perfringens ATCC
           13124]
 gi|110673513|gb|ABG82500.1| putative pilus biogenesis protein [Clostridium perfringens ATCC
           13124]
          Length = 339

 Score = 42.8 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 55/144 (38%), Gaps = 9/144 (6%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESIS 70
           F D+       +   V++G+P+  ++ +I     D    E  +R+ +    G +LS++  
Sbjct: 4   FKDEASYICLNLSTYVKSGMPIGRSLDLIKNTVKDKKYKESLKRIEKKVLNGEALSKAFK 63

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
                 P          +    +  GNL E L   +R +   K +K K+        +  
Sbjct: 64  EEGNLYP-----DLMKDMMKIGEESGNLEEVLEKCARNILAEKEIKNKIIKSLRYPIS-- 116

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNV 154
            ++  L   +   V +  P ++++
Sbjct: 117 -LLIGLIIMIFGYVTYILPQFVDM 139


>gi|300742222|ref|ZP_07072243.1| putative bacterial type II secretion system protein F domain
           protein [Rothia dentocariosa M567]
 gi|300381407|gb|EFJ77969.1| putative bacterial type II secretion system protein F domain
           protein [Rothia dentocariosa M567]
          Length = 474

 Score = 42.8 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 45/140 (32%), Gaps = 6/140 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L+++   +RAGL ++ A+  +               IE   L L++S            
Sbjct: 336 MLELLAAQLRAGLGLTGALQALGRAL-AHEERAISDAIEHITLTLTVSADWQAAWDGYDH 394

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME-----AKASAWII 133
             +   + +++     G   S  L + +   R  +   A+  +  +            + 
Sbjct: 395 PLLRELARILAPAYSAGTPSSALLRHCAATYRLEERRAAERASAKLAVALVLPLGLCSLP 454

Query: 134 GSLPFCVSTLVYFTSPGYMN 153
             +   +  +V    PG + 
Sbjct: 455 AFICCGIIPIVISLLPGLLA 474


>gi|167038601|ref|YP_001666179.1| hypothetical protein Teth39_2222 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320114926|ref|YP_004185085.1| type II secretion system F domain-containing protein
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166857435|gb|ABY95843.1| hypothetical protein Teth39_2222 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928017|gb|ADV78702.1| Type II secretion system F domain protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 241

 Score = 42.8 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 48/137 (35%), Gaps = 2/137 (1%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            ++ P A++I +  +  G+   + ++ IV      VR            G SL ++++  
Sbjct: 103 EEELPAAIEIFINGLEVGMNKENIISYIVRTREGVVRDLLHEAQVRLDTGSSLKDALTYA 162

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM--EAKASA 130
                      F  +I+ +     ++ E L  L   +R+    K    A  +        
Sbjct: 163 ASKSLNDHFKRFVKIITGEFASEQDIKENLEELLDEVREINYNKKTESASVLDNSLFFPI 222

Query: 131 WIIGSLPFCVSTLVYFT 147
           ++   +P  +   + F 
Sbjct: 223 FLGYFIPILIIFALPFV 239


>gi|148656328|ref|YP_001276533.1| hypothetical protein RoseRS_2203 [Roseiflexus sp. RS-1]
 gi|148568438|gb|ABQ90583.1| hypothetical protein RoseRS_2203 [Roseiflexus sp. RS-1]
          Length = 316

 Score = 42.8 bits (99), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/192 (9%), Positives = 60/192 (31%), Gaps = 11/192 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIE-- 57
           +    ++  A+     P  +  +   VRAG  +  A+  ++      P+++E+   +E  
Sbjct: 119 LWFEEQRYIARIDAALPAFVGRLEAQVRAGSGLQPAIEKVIADMPASPLKAEWSWFLERL 178

Query: 58  -TQHLGLSLSESISRMVRYMPLQEVSFFSTVI----SVQSQLGGNLSEALANLSRILRDR 112
                   L+ + +              +T +        Q    L + +      ++  
Sbjct: 179 GQPIANGFLATAATVCAALRAQTPSRRHATFLSHLEIAIEQPHAALVQRIRAAYEAMQAS 238

Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM---LLGVAA 169
               + +     + + +   +  +   ++  ++               G +   +L +  
Sbjct: 239 DRRASMLATELSQMRNTGIALFLINVGITLYLFVVQNERFLTAYRSEPGLIVGAVLALVV 298

Query: 170 AFMLIGIMVMRL 181
           +  L+G  ++  
Sbjct: 299 SLPLVGGYLLGR 310


>gi|326330148|ref|ZP_08196459.1| putative integral membrane protein [Nocardioidaceae bacterium
           Broad-1]
 gi|325951961|gb|EGD43990.1| putative integral membrane protein [Nocardioidaceae bacterium
           Broad-1]
          Length = 298

 Score = 42.8 bits (99), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/153 (11%), Positives = 51/153 (33%), Gaps = 4/153 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL- 63
            K+   +F       +D++      G  V  A+          V +     +        
Sbjct: 148 AKRARLEFTRALGAYIDLVALERNNGSGVRQAMEAAAEVGDSWVFTRLTEELARSRWSGV 207

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              E++  +   + L ++  F+ ++ +  + G ++   L   S+ +R    +  ++   +
Sbjct: 208 PPWEALRTLAEELGLPDLEDFADIMRLSGEEGASVYTNLRARSQAMR-TAMLNDELTEAN 266

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
              +  +     L      L+   +P  + ++ 
Sbjct: 267 AVGERMSIPASLLGVVFMALL--LAPSLLRMVY 297


>gi|319785503|ref|YP_004144979.1| type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317171391|gb|ADV14929.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 405

 Score = 42.8 bits (99), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/183 (10%), Positives = 61/183 (33%), Gaps = 22/183 (12%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   + AG  V  A+  +  G+++   R + + V++    G  ++E+ + + 
Sbjct: 67  DLSRLFSELSVLLNAGFTVDRALGAVISGEANGQRRQQLQSVLDLTTGGRPIAEAFAGL- 125

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                + ++     +    +  G ++     L+         +A +            ++
Sbjct: 126 -----RGITSDVAALLASGERSGKMAYICQRLADTYEATAKRRAAIIEALAYPAFLLLVM 180

Query: 134 GSLPFCVSTLVYF---------TSPGYMNVLINDPRGHM------LLGVAAAFMLIGIMV 178
                 ++T++           ++P    + +    G +      +  +AA   L+  + 
Sbjct: 181 SGALVILATVLVPALEPIFEGSSAPKPFTMTVLSAFGTVFRDYPFVFPLAAVLGLLAWLF 240

Query: 179 MRL 181
           +  
Sbjct: 241 LSR 243


>gi|261868723|ref|YP_003256645.1| PilC [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261414055|gb|ACX83426.1| PilC [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 407

 Score = 42.8 bits (99), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/171 (12%), Positives = 64/171 (37%), Gaps = 6/171 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV-IETQHLGLSLSESISR 71
             D    L  +   ++A +P+ +++ +++   ++   + + R  ++    GL+ S+++ +
Sbjct: 57  NADICTLLSQLATLLQAAVPLKNSLQILLQNCTNIALNRWLRCLLQEIESGLAFSQALEQ 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              Y+  QE       +    ++ G L+     +++  +    ++ K+Q + +       
Sbjct: 117 QGLYLTYQER-----QLIQVGEMTGKLAAVCHEIAQHKQQALALQRKIQKILLYPLLVLG 171

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           I   L   +   +        +           + +A +  L G     LM
Sbjct: 172 ISLILTALLLLFIVPQFAAMYDNSNAQLPVFTQVLLALSQGLQGYWFALLM 222



 Score = 35.1 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/145 (10%), Positives = 46/145 (31%), Gaps = 5/145 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR----VIETQHLGL 63
           R  +           +   ++AG+P++ A+   + +         ++    +IE     L
Sbjct: 257 RIVQLSR-LVGFSHSLFLMLQAGIPLNQALQSFLPKQQSWQTKPQQQGDWLLIEGVQSAL 315

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              +        +  Q     +  +    +  G L + L  ++   + + + +  + +  
Sbjct: 316 HWIQQGYPFSASVSGQIFPPAAQQMLQVGEQSGQLPKMLQFIANDHQQQLDHQIDLLSQM 375

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTS 148
           +E      I G +   +  +     
Sbjct: 376 LEPLLMVIIGGLIGLIMLGMYLPIF 400


>gi|253996443|ref|YP_003048507.1| type II secretion system protein [Methylotenera mobilis JLW8]
 gi|253983122|gb|ACT47980.1| type II secretion system protein [Methylotenera mobilis JLW8]
          Length = 395

 Score = 42.8 bits (99), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/155 (12%), Positives = 53/155 (34%), Gaps = 6/155 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +       ++  + +GL + +A+  +   +     ++   +V+     GL LS ++ ++ 
Sbjct: 58  NLMLFSQELLALLESGLSLVEAIEALAEKEQQAESKAILNQVMGALFEGLPLSTALEKVP 117

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           +       +     +   S+  G++ +ALA           ++ K+   S+       + 
Sbjct: 118 Q-----VFTPLYIALIRASERTGDMVQALARHVAYQTQIDAVRKKIITASIYPVLLIIVG 172

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168
           G +   +   V             D      L ++
Sbjct: 173 GLVVLFLLGYVVPKFSTIYESASTDLPWMSQLLLS 207


>gi|91776770|ref|YP_546526.1| type II secretion system protein [Methylobacillus flagellatus KT]
 gi|91710757|gb|ABE50685.1| type II secretion system protein [Methylobacillus flagellatus KT]
          Length = 393

 Score = 42.4 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 54/151 (35%), Gaps = 6/151 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               ++  ++AGL + +++  I   +    +    + V++  + G + S +++      P
Sbjct: 60  FSQELLSLLKAGLGLVESLEGIAEKEQRPEIAQVLKGVLDALYRGQTFSAALAAYPSAFP 119

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                   T +   S+  G+L EAL       +  + ++ K+ A S+       + G + 
Sbjct: 120 G-----LYTSMVKASERTGDLPEALLRYIGYEQQVEVLRKKLIASSIYPFLLITVGGLVV 174

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168
             +   V             +    + L + 
Sbjct: 175 LFLLGYVVPRFSQIYADAGENQAWMLRLVLG 205


>gi|304321272|ref|YP_003854915.1| general secretion pathway protein F [Parvularcula bermudensis
           HTCC2503]
 gi|303300174|gb|ADM09773.1| general secretion pathway protein F [Parvularcula bermudensis
           HTCC2503]
          Length = 404

 Score = 42.4 bits (98), Expect = 0.026,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 54/179 (30%), Gaps = 21/179 (11%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           A   +   + A L V +A+  + GQS   P+      V      G  LS+++    +   
Sbjct: 70  ATRQLATLIDASLTVEEALNAVAGQSKGKPIADILLSVRMRIIEGWRLSDALGEYPKAFS 129

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     I    +  GNL   +  L+ +L   + M +K  +  +   A   +   + 
Sbjct: 130 P-----LYRGIVAAGESAGNLGPVMLRLADMLEKNRAMASKAMSALIYPAAIMVVAVLVV 184

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML---------------IGIMVMRL 181
             +   V          +  D      L +  + +                 G+  +R 
Sbjct: 185 VALMNFVVPQVVEQFVGMGEDLPAVTKLVIGVSDLFREWGLLLLVLVLALGAGVWQIRR 243


>gi|269955643|ref|YP_003325432.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304324|gb|ACZ29874.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
           15894]
          Length = 301

 Score = 42.4 bits (98), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 49/145 (33%), Gaps = 1/145 (0%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL- 63
            K+   +F       LD++    R+G  V  A+      +   V      V+        
Sbjct: 150 AKQARGQFRRALALYLDLVAVERRSGAGVRPAMEAAADVADSWVFRRLGEVLRRTQWSGQ 209

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              +++ +M   + L E+  F+ ++ + +  G    + L   S  LR     +    A +
Sbjct: 210 PPWDALEQMADELGLPELKDFADIVGLSATQGAAAYDHLRARSAALRSAILSEDLTAANN 269

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTS 148
           +  + +          ++ L+    
Sbjct: 270 IGERMAIPSSLLGVIFMALLIAPAV 294


>gi|315930981|gb|EFV09956.1| bacterial type II secretion system protein F domain protein
           [Campylobacter jejuni subsp. jejuni 327]
          Length = 300

 Score = 42.4 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 56/181 (30%), Gaps = 10/181 (5%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
                ++F      +      GL V +A+  +            +++++   L  +L+++
Sbjct: 50  QRLKDENFILFFKELALLCEVGLSVQEAIREL---YFMHSCKIMKKILDNLILAQNLNQA 106

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                       ++     +   ++  G +SE  + +S++       + +++        
Sbjct: 107 FENA-----NFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPTL 161

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMINFD 186
               I      +   V          L        H++L +       GI  + L + F 
Sbjct: 162 VFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFI 221

Query: 187 V 187
           V
Sbjct: 222 V 222


>gi|238917897|ref|YP_002931414.1| hypothetical protein EUBELI_01984 [Eubacterium eligens ATCC 27750]
 gi|238873257|gb|ACR72967.1| Hypothetical protein EUBELI_01984 [Eubacterium eligens ATCC 27750]
          Length = 417

 Score = 42.4 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 49/148 (33%), Gaps = 11/148 (7%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR----------SEFRRVIETQHLGLS 64
           D+   +  +   + AG+    A   IV   +   +           E          G+S
Sbjct: 268 DYSEIVSKLTLLLGAGMTTRMAWHKIVEDYNRKRQSGSIGVRPAYDEMYEADCNMQAGIS 327

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALS 123
            + +  R  +    +E    ++++    + G + L   L +      +++   AK++   
Sbjct: 328 EAAAYERFGKKCDTREYMKLASLLQTNIKKGTSQLRVLLEHEVNESFEKRKNIAKIKGEE 387

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGY 151
              K    ++  L   ++ ++      +
Sbjct: 388 ATTKLLFPMLLMLGVVMAIIMIPAVMKF 415


>gi|205356098|ref|ZP_03222865.1| hypothetical protein Cj8421_1512 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205345941|gb|EDZ32577.1| hypothetical protein Cj8421_1512 [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 393

 Score = 42.4 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/181 (11%), Positives = 55/181 (30%), Gaps = 10/181 (5%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
                ++F      +      GL V +A+  +            +++++   L  +L+++
Sbjct: 50  QRLKDENFILFFKELALLCEVGLSVQEAIREL---YLMHSCKIMKKILDNLILAQNLNQA 106

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                       ++     +   ++  G +SE  + +S++       + +++        
Sbjct: 107 FENA-----NFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPTL 161

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM--LLGVAAAFMLIGIMVMRLMINFD 186
               I      +   V          L          +L +       GI  + L + F+
Sbjct: 162 VFLSIIGAFLFLMLFVVPNFKDLFENLGTSLPFITHAMLEIYNFLDDYGIFCIFLFVIFN 221

Query: 187 V 187
           V
Sbjct: 222 V 222


>gi|163757223|ref|ZP_02164322.1| type II general secretion pathway (GSP) F protein [Kordia algicida
           OT-1]
 gi|161322801|gb|EDP94151.1| type II general secretion pathway (GSP) F protein [Kordia algicida
           OT-1]
          Length = 379

 Score = 42.4 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/165 (10%), Positives = 47/165 (28%), Gaps = 9/165 (5%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
           +    +   + AG+ + + + ++   Q     +     ++     G S+SE I     + 
Sbjct: 44  DFYTELAVLLSAGVSLKEGLELLYNSQKKKTAKQILGEIVAELIEGKSMSEVIHLQKAFT 103

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
             +  S          +  G L+  +  L      +   ++ V +              +
Sbjct: 104 EYEYYS------IKIGEETGTLAMVVKQLGAFYARKNQQRSDVISALTYPIIVFTTAFLV 157

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML--IGIMVM 179
              +   V             +  G     V  +  +   G+ ++
Sbjct: 158 VLFMLNFVVPMFQDIFKQNKVELPGITRFIVGVSEFIKTYGLFLI 202


>gi|145596964|ref|YP_001161261.1| type II secretion system protein [Salinispora tropica CNB-440]
 gi|145306301|gb|ABP56883.1| type II secretion system protein [Salinispora tropica CNB-440]
          Length = 288

 Score = 42.4 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 40/144 (27%), Gaps = 2/144 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLG 62
             +   ++F       LD++   + A      ++          V       +   Q   
Sbjct: 140 KAEAARSEFRAAVCTYLDLVALQLSAAHGPVQSLERAAEVCDGWVFDRIRESLRLAQLQM 199

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S  + +  +   + + E+     ++      G  + E L + +  LRD+      +   
Sbjct: 200 HSPWDELRELADQIGIPELGDVGAIMRSSGSEGAQVHETLRSRADSLRDQIRTDN-LARA 258

Query: 123 SMEAKASAWIIGSLPFCVSTLVYF 146
                        L F +     +
Sbjct: 259 EGVTGRLDIPGALLVFVLLGFATY 282


>gi|81428916|ref|YP_395916.1| putative type II secretion/competence system, protein comGB-like
           [Lactobacillus sakei subsp. sakei 23K]
 gi|78610558|emb|CAI55609.1| Putative Bacterial type II secretion/competence system, protein
           comGB-like [Lactobacillus sakei subsp. sakei 23K]
          Length = 335

 Score = 42.4 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 58/173 (33%), Gaps = 15/173 (8%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           + + L ++ R +  G  +  A A +       V  + R+ +   +  L   +S   +   
Sbjct: 11  YADFLQLLGRLLENGFSLQQAFAFL-----PIVFPKQRQWLNQVNQALEKGDS---LAVS 62

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
           +   +           ++L GNL + L +L RI   R+  + +++ +          +G 
Sbjct: 63  LAHADFPTDYVGQIELTELQGNLGQCLWHLGRIQSIRQKRRREIRGVLAYPLFLLAFLGG 122

Query: 136 LPFCVSTLVYFTSPGYM-------NVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L   +   +               + L        LL +    M  G+ ++  
Sbjct: 123 LIGLLRHYLLPEIAQITPESNQTGSPLSRIILWGFLLVLVLLIMGSGLFMVYR 175


>gi|319789873|ref|YP_004151506.1| Type II secretion system F domain protein [Thermovibrio
           ammonificans HB-1]
 gi|317114375|gb|ADU96865.1| Type II secretion system F domain protein [Thermovibrio
           ammonificans HB-1]
          Length = 403

 Score = 42.4 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 50/167 (29%), Gaps = 10/167 (5%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAV-IVGQSSDPVRSEFRRVIETQHLGLSLS 66
           R      +       +   + AG+P+ +AV   +   +   ++  +  V      G + +
Sbjct: 60  RRGPSNQELATFFKTLATLIDAGIPIVEAVESFVEKDTPPHLQLFYSAVAGALKEGATFT 119

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++ R          +     +    + G  L E L   + +L   +++K KV    +  
Sbjct: 120 EALKRAGLR------NETLLSLIYSGEKGALLPENLKLAALLLEKIESLKTKVAQALIYP 173

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
                +       V  ++    P  + +         L         
Sbjct: 174 A---ILFVVALGVVVFMMTAVIPKIVGIYTTAHLELPLSTRLVILFS 217



 Score = 41.3 bits (95), Expect = 0.057,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 48/134 (35%), Gaps = 7/134 (5%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVR 74
               L  +   + AG+PV +A+ + V    +       + V+E    G SLS+ +S +  
Sbjct: 268 LQRFLYTLGNLLNAGVPVVEALEIAVTTIPNLAVRLRVKPVVEHVKKGESLSKVLSEL-- 325

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                 +      +    +L GNL E     +  L    ++K K     +E      +  
Sbjct: 326 ----IPLPLVVYQLLKAGELSGNLGEMALKGAGYLETEIDVKVKSLTSLIEPVTMLIVGL 381

Query: 135 SLPFCVSTLVYFTS 148
            + F V  L+    
Sbjct: 382 MIGFIVYALLLPIV 395


>gi|290476438|ref|YP_003469343.1| type IV pilin biogenesis transmembrane protein [Xenorhabdus
           bovienii SS-2004]
 gi|289175776|emb|CBJ82579.1| component in type IV pilin biogenesis, transmembrane protein
           [Xenorhabdus bovienii SS-2004]
          Length = 399

 Score = 42.4 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 50/157 (31%), Gaps = 6/157 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
            +  +   + +G+P+   + +++ +    +       +I+    G S S ++    R   
Sbjct: 64  FIHQLSTLLASGIPLLKGLTLLLQECKQMLWRCVLTDIIQKISQGESFSTTLGHYPRL-- 121

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               S     +    +  G L      +   L  +  ++ K+Q         A++   + 
Sbjct: 122 ---FSPLFRQLIAVGEETGQLETCCQLIINRLEQQDILRKKIQKAYRYPLIVAFVTILVI 178

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
             +   V        +             ++A+ +LI
Sbjct: 179 LLMLIFVLPEFKQVYSSFNASLPLLTQWILSASDLLI 215


>gi|311110460|ref|ZP_07711857.1| competence protein [Lactobacillus gasseri MV-22]
 gi|311065614|gb|EFQ45954.1| competence protein [Lactobacillus gasseri MV-22]
          Length = 333

 Score = 42.4 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 58/167 (34%), Gaps = 14/167 (8%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            +D + +++  G  ++ ++ ++    S           + +           ++   +  
Sbjct: 21  FIDYLRQALINGYSLNASLKLLPKIWSGDSNQLVYISKQVEEG--------RQLGDVLHE 72

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
              S         + + GNL   L  LS+++R +     K++           ++ +L  
Sbjct: 73  VGFSSTLAAQINMAIIDGNLLSCLDQLSKLIRLKNKQLKKLRGELAYPALLIGMMVTLLI 132

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           C+ T +            ND   +++LG     ++IG   +  +I  
Sbjct: 133 CMQTFLKTEMSD------NDWTSNVMLGGLVMLVIIGAFFISKVIRL 173


>gi|300854277|ref|YP_003779261.1| putative general secretion pathway protein F [Clostridium
           ljungdahlii DSM 13528]
 gi|300434392|gb|ADK14159.1| predicted general secretion pathway protein F [Clostridium
           ljungdahlii DSM 13528]
          Length = 340

 Score = 42.4 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 48/155 (30%), Gaps = 7/155 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           D       +   + AG+ +S  +  +  Q +        + I+   +      S      
Sbjct: 2   DISVLCSQLSVMLGAGINISRVLDNLETQCNKSSLRLALKSIKEDVIKGQSIHS----SM 57

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                    F   +    +  G L E L  LS     + N+ + ++A  +    +     
Sbjct: 58  AKFKNIFPNFMIEMIRVGETSGKLDEVLIKLSEYYEKKNNIISTIKASLIYPVVT---FI 114

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
           +  F V  L+    P + +++ ++      L    
Sbjct: 115 TSIFIVMFLMIKIIPQFTDIIQSNGGEIPTLTRVV 149


>gi|257793130|ref|YP_003186528.1| hypothetical protein Aaci_3143 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257479822|gb|ACV60139.1| hypothetical protein Aaci_3143 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 268

 Score = 42.4 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 52/146 (35%), Gaps = 5/146 (3%)

Query: 7   KRTAKFLDDFPNALD----IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           ++  +F DD    L     ++      G+   D + +++  +   +R    R  +     
Sbjct: 108 QKRKRFEDDLRFGLRRVKMLMASLYERGITPEDMLPLLISATDGALRQLLERAYQRMQTT 167

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAKVQA 121
            +L+++++ M +   L E+   ++V     +    +L   L  ++   R +     + +A
Sbjct: 168 DTLADALTWMAQETGLAEMRQLASVWIQAGRYEGTSLETQLKQMAVDERAQFLFNLEKRA 227

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFT 147
                     +I  +      LV   
Sbjct: 228 ERKRMSVLFEVIAFIALPTIFLVGIL 253


>gi|116629903|ref|YP_815075.1| Type II secretory pathway/competence component [Lactobacillus
           gasseri ATCC 33323]
 gi|116095485|gb|ABJ60637.1| Type II secretory pathway/competence component [Lactobacillus
           gasseri ATCC 33323]
          Length = 339

 Score = 42.4 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 58/167 (34%), Gaps = 14/167 (8%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            +D + +++  G  ++ ++ ++    S           + +           ++   +  
Sbjct: 27  FIDYLRQALINGYSLNASLKLLPKIWSGDSNQLVYISKQVEEG--------RQLGDVLHE 78

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
              S         + + GNL   L  LS+++R +     K++           ++ +L  
Sbjct: 79  VGFSSTLAAQINMAIIDGNLLSCLDQLSKLIRLKNKQLKKLRGELAYPALLIGMMVTLLI 138

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           C+ T +            ND   +++LG     ++IG   +  +I  
Sbjct: 139 CMQTFLKTEMSD------NDWTSNVMLGGLVMLVIIGAFFISKVIRL 179


>gi|9587175|gb|AAF89190.1|AF268318_3 PilC [Aggregatibacter actinomycetemcomitans]
          Length = 407

 Score = 42.4 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 22/171 (12%), Positives = 64/171 (37%), Gaps = 6/171 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV-IETQHLGLSLSESISR 71
             D    L  +   ++A +P+ +++ +++   ++   + + R  ++    GL+ S+++ +
Sbjct: 57  NADICTLLSQLATLLQAAVPLKNSLQILLQNCTNIALNRWLRCLLQEIESGLAFSQALEQ 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              Y+  QE       +    ++ G L+     +++  +    ++ K+Q + +       
Sbjct: 117 QGLYLTYQER-----QLIQVGEMTGKLAAVCHEIAQHKQQALALQRKIQKILLYPLLVLG 171

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           I   L   +   +        +           + +A +  L G     LM
Sbjct: 172 ISLILTALLLLFIVPQFAAMYDNSNAQLPVFTQVLLALSQGLQGYWFALLM 222



 Score = 34.7 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/145 (9%), Positives = 45/145 (31%), Gaps = 5/145 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR----VIETQHLGL 63
           R  +           +   ++AG+P++ A+   + +         ++    +I      L
Sbjct: 257 RIVQLSR-LVGFSHSLFLMLQAGIPLNQALQSFLPKQQSWQTKPQQQGDWLLIAGVQSAL 315

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              +        +  Q     +  +    +  G L + L  ++   + + + +  + +  
Sbjct: 316 HWIQQGYPFSASVSGQIFQPAAQQMLQVGEQSGQLPKMLQFIANDHQQQLDHQIDLLSQM 375

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTS 148
           +E      I G +   +  +     
Sbjct: 376 LEPLLMVIIGGLIGLIMLGMYLPIF 400


>gi|320533995|ref|ZP_08034553.1| type II secretion system F domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133783|gb|EFW26173.1| type II secretion system F domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 307

 Score = 42.4 bits (98), Expect = 0.030,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 60/150 (40%), Gaps = 4/150 (2%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS-LSE 67
              F     + LD++  S+ AG  V +A+      S DP     R  ++   L       
Sbjct: 160 RRDFRHVVGSYLDLVAMSLSAGRGVPEALDAASSLSDDPAMLRIRDALDVARLRGDTPWA 219

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++ R+   + + E+   S  +++ ++ G  + E+L   +  +R R    A+ +       
Sbjct: 220 ALGRLGTQLRIDELRDLSAALALVAEDGAKIRESLGARASSMRRRDLSDAEGK---AGEN 276

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + + ++  L   +  +V+   P    ++ +
Sbjct: 277 SESMLVAQLVVAMGFIVFLVYPALTGIIGS 306


>gi|331092045|ref|ZP_08340876.1| hypothetical protein HMPREF9477_01519 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402246|gb|EGG81817.1| hypothetical protein HMPREF9477_01519 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 403

 Score = 42.4 bits (98), Expect = 0.031,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 45/129 (34%), Gaps = 8/129 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-------RVIETQHLGLSLSE 67
           D+P  +  +   + +G+ + +A   I+    +  + E R         +     G++ SE
Sbjct: 257 DYPEIISQLSLLIGSGMTIKNAWKKILFHYENRKKKEVRFAYEEIYCAMREMQGGMTESE 316

Query: 68  SISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           S  R  +   +       T +S    +    L+E L   ++   + +  +AK        
Sbjct: 317 SYERFGKRCGISSYMKLGTTLSQNVRKGAKGLTELLEKETKEALETRKQRAKQYGEKAGT 376

Query: 127 KASAWIIGS 135
           K    +   
Sbjct: 377 KLLLPMSMM 385


>gi|256811145|ref|YP_003128514.1| Type II secretion system F domain protein [Methanocaldococcus
           fervens AG86]
 gi|256794345|gb|ACV25014.1| Type II secretion system F domain protein [Methanocaldococcus
           fervens AG86]
          Length = 558

 Score = 42.4 bits (98), Expect = 0.031,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 54/157 (34%), Gaps = 2/157 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRA-GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
             +++  +    FP+ L  +  SV A G  + +++  +      P+  + +R+ +   L 
Sbjct: 319 REEEKVKRKESVFPDFLRSLGDSVSAKGGGMVESLEYLSNHDFGPLTKDIKRLYKRLALN 378

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +  ++S            +  FS + S     GG    A   +S   R    ++ K +  
Sbjct: 379 IDQNKSWRFFGLESCSYLIQLFSDMFSRCIYFGGEPKMAAEIISNNFRKIVQLR-KSKYQ 437

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159
           S++  A           ++          ++ L    
Sbjct: 438 SVQQFAGVIYGLGGGLALALFASLGVAKMVSDLYTSL 474


>gi|320531924|ref|ZP_08032831.1| hypothetical protein HMPREF9057_00698 [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320135860|gb|EFW27901.1| hypothetical protein HMPREF9057_00698 [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 215

 Score = 42.4 bits (98), Expect = 0.032,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 24/63 (38%)

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
                + +A ++  LP     L         ++L++   G  +  +    M +G +V R 
Sbjct: 2   ALAGPRTTARLLACLPVVGLGLGMLVGADPASLLLDGGVGSAVGALGIVLMAVGHLVTRR 61

Query: 182 MIN 184
           +I 
Sbjct: 62  LIR 64


>gi|227497417|ref|ZP_03927649.1| hypothetical protein HMPREF0058_1641 [Actinomyces urogenitalis DSM
           15434]
 gi|226833093|gb|EEH65476.1| hypothetical protein HMPREF0058_1641 [Actinomyces urogenitalis DSM
           15434]
          Length = 231

 Score = 42.4 bits (98), Expect = 0.033,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 44/148 (29%), Gaps = 1/148 (0%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAG-LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           R  +     P ALD++  +V  G  PV  A  ++V   +     E   ++      L   
Sbjct: 78  RRRQIEASLPEALDVLALAVDTGWQPVQGAERLMVSTFNAAFAHELAGILPPDGAPLIPE 137

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
                        +V           + G  LS  L   +  LR+R+  +   +     A
Sbjct: 138 LVSRLGAEPGASAQVLRLQRAFVSAPEGGEVLSGLLRAQAADLRERRRQQLARRVGCRLA 197

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154
             +A ++      +           +  
Sbjct: 198 FQAALVLLIQVPVMVVAFAVLVRALLEP 225


>gi|296132332|ref|YP_003639579.1| hypothetical protein TherJR_0811 [Thermincola sp. JR]
 gi|296030910|gb|ADG81678.1| hypothetical protein TherJR_0811 [Thermincola potens JR]
          Length = 303

 Score = 42.0 bits (97), Expect = 0.034,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 45/120 (37%), Gaps = 2/120 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   K    + + D P  +D +  S+ +G     A+  +   S   +     R+I    
Sbjct: 146 VKKRFKAWQNEVVKDIPELIDKMRISLASGKDYLSALKKVQENSGPRLSKIVERLINDMQ 205

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAKV 119
           +    ++++    +   L  +  F   + V  ++G        AN+   +RD + +  + 
Sbjct: 206 IMRP-TQALDEFAQAFGLPVMVKFVAALKVGMEVGYEQAESYFANIEDDIRDLRKLSLEE 264


>gi|296111128|ref|YP_003621509.1| ComGB [Leuconostoc kimchii IMSNU 11154]
 gi|295832659|gb|ADG40540.1| ComGB [Leuconostoc kimchii IMSNU 11154]
          Length = 348

 Score = 42.0 bits (97), Expect = 0.034,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 67/183 (36%), Gaps = 14/183 (7%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K L + +  K  +        +   +++G  +S ++ ++    S   +            
Sbjct: 11  KQLTRSKRFKIREQI-LFFQELGELLQSGYSISQSLDILASAHSKWYQWLT-----EVRY 64

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           GL+   ++  +++      VS    +    +   GNLSE L  + + L   +  + KV  
Sbjct: 65  GLNQGLALHLILQKN----VSSQILLQLKLADQHGNLSETLVAIGQNLAKLQQQQNKVMQ 120

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND----PRGHMLLGVAAAFMLIGIM 177
           +         I+G++   +  L+Y     + +   +     P      G  A  +L G++
Sbjct: 121 VMRYPLILLSILGAMLVGLKYLLYPILNQWQDKAASSDIPNPAYTYFFGGVACLLLFGLI 180

Query: 178 VMR 180
           ++ 
Sbjct: 181 IIW 183


>gi|158313207|ref|YP_001505715.1| hypothetical protein Franean1_1361 [Frankia sp. EAN1pec]
 gi|158108612|gb|ABW10809.1| hypothetical protein Franean1_1361 [Frankia sp. EAN1pec]
          Length = 287

 Score = 42.0 bits (97), Expect = 0.034,   Method: Composition-based stats.
 Identities = 19/176 (10%), Positives = 54/176 (30%), Gaps = 1/176 (0%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
             +  D      + +   + AG  +  A+          +    RR++    +       
Sbjct: 92  ITRLGDAVGTWAEQVREGLDAGQHLRAAIVASTDHPPAELAGPLRRLVARLDVLSLPDAL 151

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
            +              + +     +  G+L   +A+     R    +     AL    + 
Sbjct: 152 WAMRAEVPHPALGPMIAALDVAYRRGAGDLPRLMASQVEATRQSVALLRDQHALRARHRR 211

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +  ++  L    ++++  T P ++        G ++L V    +++ +  +  M  
Sbjct: 212 AMTLLLVLFTGSTSVLLVTWPAFLAP-YRTMSGQLVLAVIGGGVVLAVRALAAMSR 266


>gi|167466635|ref|ZP_02331339.1| putative general secretion pathway protein F. [Yersinia pestis
           FV-1]
          Length = 323

 Score = 42.0 bits (97), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 47/147 (31%), Gaps = 9/147 (6%)

Query: 31  LPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS 89
           +P+ + + ++  Q S   +    +R+      G S ++++S           S     + 
Sbjct: 1   MPLDEVLDIVGKQNSKSKMIEIIQRIRVNIQEGHSFADALSPFPA-----VFSPLYKTMV 55

Query: 90  VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149
              ++ G+L   L  L+  +   + ++ K+    +       ++      +  L+    P
Sbjct: 56  TAGEVSGHLGLVLVRLADHIEQTQKIQRKIIQALIYP---CVLVLISLSVIIILLTAVVP 112

Query: 150 GYMNVLINDPRGHMLLGVAAAFMLIGI 176
             +           L       +   I
Sbjct: 113 NIVEQFSFSETALPLSTKVLMILSYSI 139


>gi|145596548|ref|YP_001160845.1| type II secretion system protein [Salinispora tropica CNB-440]
 gi|145305885|gb|ABP56467.1| type II secretion system protein [Salinispora tropica CNB-440]
          Length = 253

 Score = 42.0 bits (97), Expect = 0.035,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 44/131 (33%), Gaps = 4/131 (3%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           +RAG PV  +V  +      P+     RV     LG   +E+ S +              
Sbjct: 126 MRAGAPVDRSVLAVAEALDGPLAERLARVGRLLRLGAEPAEAWSTLAAV---PGAERLVG 182

Query: 87  VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IGSLPFCVSTLVY 145
                +  G +L+ AL  L+  LR  +   A+  A          + +  LP  +   + 
Sbjct: 183 AALRSATSGASLAGALTRLADDLRADRTTAAEATAQRSGVLIVLPLGLCFLPAFILAGLV 242

Query: 146 FTSPGYMNVLI 156
                 +  ++
Sbjct: 243 PVIVAVLGDVL 253


>gi|225568583|ref|ZP_03777608.1| hypothetical protein CLOHYLEM_04660 [Clostridium hylemonae DSM
           15053]
 gi|225162599|gb|EEG75218.1| hypothetical protein CLOHYLEM_04660 [Clostridium hylemonae DSM
           15053]
          Length = 384

 Score = 42.0 bits (97), Expect = 0.035,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 50/167 (29%), Gaps = 6/167 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
                   L+ +     AG  + +AV+          ++E    +  ++     +   S 
Sbjct: 129 VDQQISTFLNSVKVLTSAGYSIDEAVSDAAEAG----KTESDVKLIDKNGNGGFAMPHSF 184

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           + +YMP   ++     I                L   +  R+     V    +       
Sbjct: 185 LFQYMPYIILAVLCYTIGYIMMAFRKKDVRQRMLCSSISGRRQNMQMVAGFVVIGAGFWG 244

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           I   LP  +    +   P  +  +IN      +L   +    IG++V
Sbjct: 245 ICMLLPLVMYPGQFLNDPNNIYYMINS--FLCVLVGLSIAFTIGVVV 289


>gi|222479408|ref|YP_002565645.1| type II secretion system protein [Halorubrum lacusprofundi ATCC
           49239]
 gi|222452310|gb|ACM56575.1| type II secretion system protein [Halorubrum lacusprofundi ATCC
           49239]
          Length = 680

 Score = 42.0 bits (97), Expect = 0.036,   Method: Composition-based stats.
 Identities = 20/178 (11%), Positives = 52/178 (29%), Gaps = 7/178 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQHL 61
               R  +      +++  +      GL   + +  +     +   V  EF+ ++     
Sbjct: 142 RASAREREINLLLADSVSFMYALSVGGLNQLEILRAMATAEDTYGEVSQEFQSIVNETEY 201

Query: 62  GL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                  +I +     P  E+S F   +      GGN+   L +           + ++ 
Sbjct: 202 FGTDYRNAIRQQSMETPSDELSQFLADMLSIVNSGGNMESFLKDKKEKHLRTSKQEREMT 261

Query: 121 ALSMEAKASAWII----GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
             ++E     ++       L   +  ++         +L       + L      +L+
Sbjct: 262 LETLELFGEMYMTLSLFPLLLIIILVIMGMMGESDDFLLYATVYALIPLTGVGFLVLV 319


>gi|290969006|ref|ZP_06560541.1| type II secretion system F domain protein [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290780962|gb|EFD93555.1| type II secretion system F domain protein [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 399

 Score = 42.0 bits (97), Expect = 0.037,   Method: Composition-based stats.
 Identities = 12/141 (8%), Positives = 31/141 (21%), Gaps = 5/141 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                   +   + +G+P+  A  ++          +  +          L + IS    
Sbjct: 61  QLIFWFQQMAVLLSSGIPLVQAWTLLCRDWRKAGEKQCLQ-----RGVFRLEQGISVTEV 115

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
               +        +    +  G L+E    L       +  K  V    +          
Sbjct: 116 LEESELFPVMVIPMVRAGEQSGQLAEIFQLLGTYYTYVEKQKQGVLQALLYPAFLCCCAL 175

Query: 135 SLPFCVSTLVYFTSPGYMNVL 155
                    +        + +
Sbjct: 176 GAAIFAIFFLLPVFENLFSQM 196


>gi|123443546|ref|YP_001007519.1| general secretion pathway protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090507|emb|CAL13376.1| general secretion pathway protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 402

 Score = 42.0 bits (97), Expect = 0.038,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   V A +P+ +A+A+I  Q +   V S   ++ +    G SLS+S+S+
Sbjct: 62  NRDLILITRQMSILVNAAIPLDEALALIENQSTKSKVDSVIHKIRKRVLEGHSLSDSLSQ 121

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                     +     +    +L G+L   L+NL+  +   + +K+K+    +       
Sbjct: 122 FPAI-----FNSLYRSMIAAGELSGHLGLVLSNLADHIEQARKVKSKIIQTLIYPAILVS 176

Query: 132 II 133
           + 
Sbjct: 177 VS 178


>gi|331003047|ref|ZP_08326559.1| hypothetical protein HMPREF0491_01421 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330413091|gb|EGG92466.1| hypothetical protein HMPREF0491_01421 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 409

 Score = 42.0 bits (97), Expect = 0.040,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 53/161 (32%), Gaps = 19/161 (11%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR---------SEF 52
           K  ++K   + + D+P+ +  ++  + AGL V  +   IV    +  R          E 
Sbjct: 249 KFNLEKIKRELMKDYPDIVSKLIVFIGAGLSVRQSWESIVKDYENEYRENNEKRYAYEEM 308

Query: 53  RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL---------- 102
            +  E    G   +       R   L++    ++++    + G +    L          
Sbjct: 309 AKAYERLKNGTHENIVYKDFGRSCSLRQYMKLASLLEQNRRSGISNLHTLLSMESQSAWD 368

Query: 103 ANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143
             L+   R+ + +  K+            ++  +P  +   
Sbjct: 369 ERLNLARREGEELNTKLLLPLFIMLLIVMMMIIVPALLIFY 409


>gi|74317451|ref|YP_315191.1| type II secretion system protein F [Thiobacillus denitrificans ATCC
           25259]
 gi|74056946|gb|AAZ97386.1| type II secretion system protein F [Thiobacillus denitrificans ATCC
           25259]
          Length = 392

 Score = 42.0 bits (97), Expect = 0.040,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 46/145 (31%), Gaps = 7/145 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               ++  + AGL +S+A+  +   +     R    R++ +   G   S +++    + P
Sbjct: 60  FTQELIALLDAGLTLSEALETLAEKEHRAESRQLIERLLASMREGRPFSAALAAQDAFPP 119

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                         ++  G+LS ALA           +K KV + ++       +   + 
Sbjct: 120 ------LYAATVRAAESTGDLSPALARYVSYQSQIDTVKKKVVSAAIYPMLLIAVGTLVV 173

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGH 162
             +   V             D    
Sbjct: 174 AFLLGYVVPRFATVYADTGRDLPWM 198


>gi|291333379|gb|ADD93084.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S05-C205]
          Length = 339

 Score = 42.0 bits (97), Expect = 0.040,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 52/185 (28%), Gaps = 8/185 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQ 59
           K   ++R +      P A         A    S     +         V  +   V    
Sbjct: 146 KREAERRGSMIEKYLPYAASYTAAMSAANATPSKIFRSLAMNKDIYGDVADDAAMVYRDV 205

Query: 60  HLGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            L    L  ++   V       ++ F   +      GG L     N +         + +
Sbjct: 206 TLLGYDLITAMKMSVDRAASVWLTEFFQGMVGTLTAGGQLKLYFLNRAEHYMRENRTRLQ 265

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +   S+   A ++I+ ++   +  +V         +      G  +       +++G + 
Sbjct: 266 MFLESIALLAESYIVVAVAMPLFLIVMLVI-----MFWVSGSGAQMSEGMLYGIVLGFVP 320

Query: 179 MRLMI 183
           M  + 
Sbjct: 321 MIHIA 325


>gi|283955074|ref|ZP_06372577.1| general secretory pathway protein F [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793441|gb|EFC32207.1| general secretory pathway protein F [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 392

 Score = 42.0 bits (97), Expect = 0.040,   Method: Composition-based stats.
 Identities = 19/177 (10%), Positives = 53/177 (29%), Gaps = 10/177 (5%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
                ++F      +      GL V +A+  +            +++++   L  SL+++
Sbjct: 50  QRLKDENFILFFKELALLCEVGLSVQEAIKEL---YLMHSCKIMKKILDNLILAQSLNQA 106

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                       ++     +   ++  G +SE  + +S++       + +++        
Sbjct: 107 FENA-----NFGLNRAELALIKTAENTGKISEIFSQISKLREKSMENQKQLKKALRYPTL 161

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM--LLGVAAAFMLIGIMVMRLMI 183
               I      +   V          L  +       +L +       GI    L++
Sbjct: 162 VFLGIIGAFLFLMLFVVPNFKDLFENLDANLPFITHAMLEIYNFLDTYGIFCTSLLV 218


>gi|116671912|ref|YP_832845.1| type II secretion system protein [Arthrobacter sp. FB24]
 gi|116612021|gb|ABK04745.1| type II secretion system protein [Arthrobacter sp. FB24]
          Length = 204

 Score = 42.0 bits (97), Expect = 0.042,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 46/139 (33%), Gaps = 2/139 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  + L D    L++I   + AG  +  A+ ++   +S   R   R V+    +G     
Sbjct: 57  RAGEGLRDTAMMLELIGAMLDAGSGIGRALELVADSASPEYRHSLRPVVSALAIGADWET 116

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +       +   E+      +   +  G   S  L   +  LR  +   A+ +A ++  +
Sbjct: 117 AWR--SSEVRTPELLVLRQALGFAALTGAPSSAILYAQAARLRRERFRAAEKRAAALGVR 174

Query: 128 ASAWIIGSLPFCVSTLVYF 146
               +          L   
Sbjct: 175 LVVPLGLCSLPAFVCLGVV 193


>gi|319934885|ref|ZP_08009330.1| hypothetical protein HMPREF9488_00161 [Coprobacillus sp. 29_1]
 gi|319810262|gb|EFW06624.1| hypothetical protein HMPREF9488_00161 [Coprobacillus sp. 29_1]
          Length = 342

 Score = 42.0 bits (97), Expect = 0.042,   Method: Composition-based stats.
 Identities = 17/172 (9%), Positives = 54/172 (31%), Gaps = 12/172 (6%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
              + +   ++AGL V   + ++     +        +     LG    ++   +     
Sbjct: 10  QFSNQMAMILKAGLSVQQGIEMMQQDLENQNLK----IALEAILGYMKEDAHLSLA-IER 64

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                 +   +    ++ G++ + + +L        +M +++Q           ++  + 
Sbjct: 65  TGMFDDYMVHLLKVGEVSGHIDDVMESLGEYYLRMDDMTSQLQQALTYPIILFIMMFVVV 124

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHML-------LGVAAAFMLIGIMVMRLM 182
             V   V       +  L +              +     FM++GI ++ ++
Sbjct: 125 GVVVFQVLPIFENVLMSLGSHLSSFASRFMNFGQIFSMLGFMILGIFMIMII 176


>gi|226363662|ref|YP_002781444.1| hypothetical protein ROP_42520 [Rhodococcus opacus B4]
 gi|226242151|dbj|BAH52499.1| hypothetical membrane protein [Rhodococcus opacus B4]
          Length = 194

 Score = 42.0 bits (97), Expect = 0.043,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 53/143 (37%), Gaps = 4/143 (2%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           A D++   +RAGLPV+ A   +   +  P+    RR  +   LG   + +          
Sbjct: 54  AFDLLAACLRAGLPVATAAQAVARSAPAPLSESLRRAADLLALGADAATAWEAAASDPAT 113

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IGSLP 137
           + ++  +      +  G +L+ ++  L+   R +    A   A       S  + +  LP
Sbjct: 114 ESLARMA---RRSAASGSSLAGSMTELAADARTQVEHLASASAERAGVLISGPLGLCFLP 170

Query: 138 FCVSTLVYFTSPGYMNVLINDPR 160
             +   +     G  + +++   
Sbjct: 171 AFICLGIIPVVVGLASRVLDGGL 193


>gi|163785985|ref|ZP_02180433.1| type II general secretion pathway (GSP) F protein [Flavobacteriales
           bacterium ALC-1]
 gi|159877845|gb|EDP71901.1| type II general secretion pathway (GSP) F protein [Flavobacteriales
           bacterium ALC-1]
          Length = 377

 Score = 41.6 bits (96), Expect = 0.043,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 59/182 (32%), Gaps = 24/182 (13%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
           +    +   ++AG+ +  A+ +I     +    +  + V+ +   G SLSESI     + 
Sbjct: 43  DFYTELSVLLKAGINLKQALELIKNSQKNKKTVAVLQTVLNSIVDGQSLSESIKEQKDFS 102

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
             +  S          +  G  ++    L      +   +  +            I+ + 
Sbjct: 103 DYEYYS------LKIGEETGTSAKIAEQLGEFYSRKNEQRKHLINALTYP---CIILSTA 153

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA--------------FMLIGIMVMRLM 182
              V  ++ F  P + ++          + V                   ++G++V R +
Sbjct: 154 VLVVIFMLQFVVPMFEDIFKQQNVELPAITVFVVNTSAFIKEYGWLILVFVLGLIVSRAV 213

Query: 183 IN 184
           +N
Sbjct: 214 LN 215


>gi|86149269|ref|ZP_01067500.1| general secretory pathway protein F [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88596137|ref|ZP_01099374.1| general secretory pathway protein F [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|157415694|ref|YP_001482950.1| general secretory pathway protein F [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|32765533|gb|AAP87276.1| CtsF [Campylobacter jejuni]
 gi|85840051|gb|EAQ57309.1| general secretory pathway protein F [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88190978|gb|EAQ94950.1| general secretory pathway protein F [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|157386658|gb|ABV52973.1| general secretory pathway protein F [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|284926677|gb|ADC29029.1| general secretory pathway protein F [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315927417|gb|EFV06755.1| bacterial type II secretion system protein F domain protein
           [Campylobacter jejuni subsp. jejuni DFVF1099]
 gi|315929007|gb|EFV08250.1| bacterial type II secretion system protein F domain protein
           [Campylobacter jejuni subsp. jejuni 305]
          Length = 393

 Score = 41.6 bits (96), Expect = 0.043,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 56/181 (30%), Gaps = 10/181 (5%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
                ++F      +      GL V +A+  +            +++++   L  +L+++
Sbjct: 50  QRLKDENFILFFKELALLCEVGLSVQEAIREL---YFMHSCKIMKKILDNLILAQNLNQA 106

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                       ++     +   ++  G +SE  + +S++       + +++        
Sbjct: 107 FENA-----NFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPTL 161

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMINFD 186
               I      +   V          L        H++L +       GI  + L + F 
Sbjct: 162 VFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFI 221

Query: 187 V 187
           V
Sbjct: 222 V 222


>gi|325964625|ref|YP_004242531.1| type II secretion system protein F [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470712|gb|ADX74397.1| type II secretion system protein F [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 204

 Score = 41.6 bits (96), Expect = 0.046,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 2/128 (1%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L+++   + AG  +  A+ ++ G +SD      R V+    +G     +       + L
Sbjct: 69  MLELVAAMLDAGSSIGRALELVSGSASDRYCRALRPVVSALAIGADWETAWRSSA--VRL 126

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
            EV      +   +  G   S  L   +  LR  +   A+ +A S+  K    +      
Sbjct: 127 PEVLELRDALGFAALTGAPSSAILYAQAARLRRERFRAAEKRAASLGVKLVVPLGLCSLP 186

Query: 139 CVSTLVYF 146
               L   
Sbjct: 187 AFICLGVV 194


>gi|317472141|ref|ZP_07931473.1| type II secretion system protein [Anaerostipes sp. 3_2_56FAA]
 gi|316900545|gb|EFV22527.1| type II secretion system protein [Anaerostipes sp. 3_2_56FAA]
          Length = 374

 Score = 41.6 bits (96), Expect = 0.047,   Method: Composition-based stats.
 Identities = 17/144 (11%), Positives = 49/144 (34%), Gaps = 2/144 (1%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
           ++++P  +   V  + AG+ +  AV  I             R  +     ++L  S ++ 
Sbjct: 230 MEEYPIIISRFVLLLGAGMTIQGAVHSIGSSFDRDHPKFVYRQFQQADKKIALGMSQAQA 289

Query: 73  VRYMPLQEVSFFS--TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +R +             + +   L     + L+ L     +  + + +      E  ++ 
Sbjct: 290 LRELGSSIQLPCYKKLSVLLSQSLLRGTRDLLSRLEEEETEAFSERKETARRKGEEASTK 349

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNV 154
            ++  +   +  L     P +++ 
Sbjct: 350 LLMPMILMLIVILTLLMVPAFLSF 373


>gi|292654784|ref|YP_003534681.1| type IV pilus biogenesis complex membrane subunit [Haloferax
           volcanii DS2]
 gi|291372968|gb|ADE05195.1| type IV pilus biogenesis complex membrane subunit [Haloferax
           volcanii DS2]
          Length = 639

 Score = 41.6 bits (96), Expect = 0.047,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 63/187 (33%), Gaps = 12/187 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ 59
           +  L   R        P A+  +             +  +    +       FR V+ T 
Sbjct: 140 LGWLATARRENIERTLPGAVRYLHVLSSGSDGPRGMLRRVAETDAYGETAIAFRSVLNTA 199

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTV-ISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            L  +++E + R+ R  P + +     +     +  G +       +   +   +  +A+
Sbjct: 200 SLTGNVNEGLRRVARDTPSEGMLAPFLLKFREHAGQGSDALRNYLRMESRMLGHRQDRAR 259

Query: 119 VQAL-----SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM----LLGVAA 169
            +A        E      ++ SL   V T++   +PG    +   P G      ++  ++
Sbjct: 260 ERAEGFLELLAELFIVLLVLPSLLVIVLTVMSVIAPGLSAPV-ATPLGQTTTRGVVVYSS 318

Query: 170 AFMLIGI 176
           A  ++G+
Sbjct: 319 AAFIVGV 325


>gi|171915860|ref|ZP_02931330.1| type II secretion system protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 332

 Score = 41.6 bits (96), Expect = 0.047,   Method: Composition-based stats.
 Identities = 20/161 (12%), Positives = 49/161 (30%), Gaps = 6/161 (3%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
             + + AG+ +  +V +++ Q        +   I+          S +  V       V+
Sbjct: 13  FAKLLGAGMHLDRSVDLLLEQGPPASMRSYLNGIKQGLAE---RLSFTESVARHNAGIVT 69

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
                +    + GG L  +  +L+     R+  + K     +       +    P     
Sbjct: 70  PLEISLLDAGEKGGRLEASCEHLAHYFELRQKSRDKAIGALIYPVLLLHVGALFPDFTR- 128

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
              +   G  + L+      +++  A A +      +  M 
Sbjct: 129 --MWNGGGLQDYLLQTGGRLLMIWAALAVLGACWWFVLKMA 167


>gi|167748319|ref|ZP_02420446.1| hypothetical protein ANACAC_03063 [Anaerostipes caccae DSM 14662]
 gi|167652311|gb|EDR96440.1| hypothetical protein ANACAC_03063 [Anaerostipes caccae DSM 14662]
          Length = 445

 Score = 41.6 bits (96), Expect = 0.047,   Method: Composition-based stats.
 Identities = 17/144 (11%), Positives = 49/144 (34%), Gaps = 2/144 (1%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
           ++++P  +   V  + AG+ +  AV  I             R  +     ++L  S ++ 
Sbjct: 301 MEEYPMIISRFVLLLGAGMTIQGAVHSIGSSFDRDHPKFVYRQFQQADKKIALGMSQAQA 360

Query: 73  VRYMPLQEVSFFS--TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +R +             + +   L     + L+ L     +  + + +      E  ++ 
Sbjct: 361 LRELGSSIQLPCYKKLSVLLSQSLLRGTRDLLSRLEEEETEAFSERKETARRKGEEASTK 420

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNV 154
            ++  +   +  L     P +++ 
Sbjct: 421 LLMPMILMLIVILTLLMVPAFLSF 444


>gi|269118870|ref|YP_003307047.1| type II secretion system protein [Sebaldella termitidis ATCC 33386]
 gi|268612748|gb|ACZ07116.1| type II secretion system protein [Sebaldella termitidis ATCC 33386]
          Length = 388

 Score = 41.6 bits (96), Expect = 0.049,   Method: Composition-based stats.
 Identities = 20/171 (11%), Positives = 54/171 (31%), Gaps = 7/171 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           +F   +  +   V+A + ++DA++++    S  ++             +S  ++   +  
Sbjct: 55  EFTTFITSLYFLVKADIRIADALSILAENFSGALKD-------NISNAVSALKAGKTLRE 107

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                            ++  GN+   L NL       + +K ++  LSM          
Sbjct: 108 GFAFITDDKIFLNTMEIAEESGNILLPLENLKNKYEFEQELKKEIINLSMYPALVLGTSI 167

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            +   +   V     G  N L  +      + +  + +     ++  +   
Sbjct: 168 IIISILFKFVVPKFSGIYNDLNKEIPLLTKIMIKLSNLYGKYFIIISISVI 218


>gi|254426916|ref|ZP_05040623.1| Bacterial type II secretion system protein F domain [Alcanivorax
           sp. DG881]
 gi|196193085|gb|EDX88044.1| Bacterial type II secretion system protein F domain [Alcanivorax
           sp. DG881]
          Length = 291

 Score = 41.6 bits (96), Expect = 0.049,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 50/130 (38%), Gaps = 3/130 (2%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS---LSESISRMVR 74
               +    + AGL +   + +I  Q    +     R+     L  S    ++++  +  
Sbjct: 148 ELCHMTRMLMEAGLSLERVLRIIGVQGRPLLPILIARIDRFNRLMKSGAERTQALDELGE 207

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
              +  +  +  ++   SQLG  +S +L  +    ++ +  + + +   + AK +  ++ 
Sbjct: 208 NKRIPVLRSYVVLMKQSSQLGAGVSHSLDQIIDEAQNVERNRIREETNRIGAKMTVIMMA 267

Query: 135 SLPFCVSTLV 144
            +   +  L+
Sbjct: 268 FMLPALFILI 277


>gi|149177766|ref|ZP_01856366.1| probable type IV pilus assembly protein TapC [Planctomyces maris
           DSM 8797]
 gi|148843416|gb|EDL57779.1| probable type IV pilus assembly protein TapC [Planctomyces maris
           DSM 8797]
          Length = 370

 Score = 41.6 bits (96), Expect = 0.049,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 7/133 (5%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           P+ L  +  +  +G P+  A   +   + +  + + F  ++E  H G     S+      
Sbjct: 237 PDVLRFLHITTESGRPLLGAFETLSHTTKNPYLSARFNAILEDVHKGNDCWTSLHDYSLL 296

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P +        +   +Q  GNLS AL  +++ +  R N +  +    +E      +   
Sbjct: 297 TPSEVR------LLQSAQRAGNLSWALKAIAKGIERRINYRLALIREYLEPAFILSVGCL 350

Query: 136 LPFCVSTLVYFTS 148
           +   V  L     
Sbjct: 351 VGIFVIGLFLPLV 363


>gi|86152581|ref|ZP_01070786.1| general secretory pathway protein F [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|85843466|gb|EAQ60676.1| general secretory pathway protein F [Campylobacter jejuni subsp.
           jejuni HB93-13]
          Length = 393

 Score = 41.6 bits (96), Expect = 0.049,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 56/181 (30%), Gaps = 10/181 (5%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
                ++F      +      GL V +A+  +            +++++   L  +L+++
Sbjct: 50  QRLKDENFILFFKELALLCEVGLSVQEAIKEL---YLMHSCKIMKKILDNLILAQNLNQA 106

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                       ++     +   ++  G +SE  + +S++       + +++        
Sbjct: 107 FENA-----NFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPTL 161

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMINFD 186
               I      +   V          L        H++L +       GI  + L + F 
Sbjct: 162 VFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDSYGIFCIFLFVVFI 221

Query: 187 V 187
           V
Sbjct: 222 V 222


>gi|313896089|ref|ZP_07829643.1| type II secretion system protein F domain protein [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312975514|gb|EFR40975.1| type II secretion system protein F domain protein [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 405

 Score = 41.6 bits (96), Expect = 0.050,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 46/144 (31%), Gaps = 7/144 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR--SEFRRVIETQHLGLSLSESISRMVRYM 76
             + +   + AG+PV +A+  I   +            +      G +LS+++ R  R  
Sbjct: 70  LFEELAALLAAGMPVHEALGQIAAGADAASAYGRLVAVLHADVLCGTALSQAMERRPR-- 127

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
                S     +    +  G L    A  +  L +   ++  +++            G L
Sbjct: 128 ---VFSPSVVGMVRAGEESGTLDHIFAETAAFLTEAHTLRESMKSALAYPLFLLVATGFL 184

Query: 137 PFCVSTLVYFTSPGYMNVLINDPR 160
              ++  +       +  L  +P 
Sbjct: 185 IVLMTMFILPVFASLLRDLGAEPP 208


>gi|307748335|gb|ADN91605.1| General secretory pathway protein F [Campylobacter jejuni subsp.
           jejuni M1]
          Length = 393

 Score = 41.6 bits (96), Expect = 0.051,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 56/181 (30%), Gaps = 10/181 (5%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
                ++F      +      GL V +A+  +            +++++   L  +L+++
Sbjct: 50  QRLKDENFILFFKELALLCEVGLSVQEAIREL---YFMYSCKIMKKILDNLILAQNLNQA 106

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                       ++     +   ++  G +SE  + +S++       + +++        
Sbjct: 107 FENA-----NFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPTL 161

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMINFD 186
               I      +   V          L        H++L +       GI  + L + F 
Sbjct: 162 VFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFI 221

Query: 187 V 187
           V
Sbjct: 222 V 222


>gi|227484638|ref|ZP_03914954.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
           51172]
 gi|227237358|gb|EEI87373.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
           51172]
          Length = 366

 Score = 41.6 bits (96), Expect = 0.051,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 47/147 (31%), Gaps = 9/147 (6%)

Query: 28  RAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
            +G+ + D++ +I  Q +   V      VI     GL   ES       +  +  S    
Sbjct: 39  NSGISLYDSLNIINQQGTDKKVIKAISLVIAGLKKGLDPYESF-----CLANEYFSPLVL 93

Query: 87  VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
                    G L + L +LS  + +    K+ V+           ++      +  L+ F
Sbjct: 94  AFIKTGTKTGYLGKILRDLSDFIFEESKNKSTVKQAMTYPIL---VLVVSILVIIALIKF 150

Query: 147 TSPGYMNVLINDPRGHMLLGVAAAFML 173
             P ++ +         L      F+ 
Sbjct: 151 VMPSFIEIFDKSEITLPLPTRILLFVS 177


>gi|229816457|ref|ZP_04446758.1| hypothetical protein COLINT_03511 [Collinsella intestinalis DSM
           13280]
 gi|229807999|gb|EEP43800.1| hypothetical protein COLINT_03511 [Collinsella intestinalis DSM
           13280]
          Length = 222

 Score = 41.6 bits (96), Expect = 0.052,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 52/146 (35%), Gaps = 1/146 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ L  +     + +     DI+   + AGL    ++++     S  +     + +    
Sbjct: 67  LEMLRPRSRGIGMGEVAEMTDIVRLGLSAGLSFDASLSLYCEGRSGELAQLMEKALFCWQ 126

Query: 61  L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           +   S  E++ R+ +   ++ +  F+  +S   +LG  L+E L    R +R       + 
Sbjct: 127 VGVTSRDEALDRVAQDAGVRALGSFAAAVSQALELGAPLAETLEGQGREMRAAHRAHVER 186

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVY 145
           +      K        +   +   + 
Sbjct: 187 EIERAPVKLLIPTGTLILPALLLSIV 212


>gi|13475688|ref|NP_107255.1| general secretion proteinF [Mesorhizobium loti MAFF303099]
 gi|14026444|dbj|BAB53041.1| general secretion protein F [Mesorhizobium loti MAFF303099]
          Length = 405

 Score = 41.6 bits (96), Expect = 0.052,   Method: Composition-based stats.
 Identities = 15/140 (10%), Positives = 44/140 (31%), Gaps = 7/140 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           D       +   + AG  V  A+  +  G+++   R + + V++    G  ++E+ + + 
Sbjct: 67  DLSRLFSELSVLLNAGFTVDRALGAVISGEANRQRRQQLQSVLDLTTGGRPIAEAFAALP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
              P          +    +  G ++     L+         +A +            ++
Sbjct: 127 GITP------DVAALLASGERSGKMAFICQRLADTFEATAKRRAAIIEALAYPAFLLLVM 180

Query: 134 GSLPFCVSTLVYFTSPGYMN 153
                 ++T++         
Sbjct: 181 SGALVILATVLVPALEPIFE 200


>gi|330863524|emb|CBX73640.1| hypothetical protein YEW_CV11520 [Yersinia enterocolitica W22703]
          Length = 402

 Score = 41.6 bits (96), Expect = 0.053,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   V A +P+ +A+A+I  Q +   V S   ++ +    G SLS+S+S+
Sbjct: 62  NRDLILITRQMSILVNAAIPLDEALALIENQSTKSKVDSVIHKIRKRVLEGHSLSDSLSQ 121

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                     +     +    +L G+L   L+NL+  +   + +K+K+    +       
Sbjct: 122 FPAI-----FNSLYRSMIAAGELSGHLGLVLSNLADHIEQTRKVKSKITQTLIYPAILVL 176

Query: 132 II 133
           + 
Sbjct: 177 VS 178


>gi|307595026|ref|YP_003901343.1| type II secretion system F domain-containing protein [Vulcanisaeta
           distributa DSM 14429]
 gi|307550227|gb|ADN50292.1| Type II secretion system F domain protein [Vulcanisaeta distributa
           DSM 14429]
          Length = 507

 Score = 41.6 bits (96), Expect = 0.053,   Method: Composition-based stats.
 Identities = 17/162 (10%), Positives = 46/162 (28%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
                 + P  + ++      G  ++ A  V        +  E+  +        S++++
Sbjct: 75  KENIEWELPFFVVLLDIIHDVGGDITHAFEVSGRIGLKWISREWSLIRRYSLTTNSITKA 134

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           +    R  P  E   F           G+L   + ++        + +    +  +    
Sbjct: 135 MQLRARLHPSIEFQRFINGYVSVWGYSGDLGNYVRSVESTYLSTLSNRLSSLSKQIIDIV 194

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
            A +   +   +  ++         +L   P   +LL     
Sbjct: 195 VAIVSSLIVLILFVIITTILGMNYAILYLMPAIALLLPAIIL 236


>gi|327310830|ref|YP_004337727.1| hypothetical protein TUZN_0932 [Thermoproteus uzoniensis 768-20]
 gi|326947309|gb|AEA12415.1| hypothetical protein TUZN_0932 [Thermoproteus uzoniensis 768-20]
          Length = 563

 Score = 41.6 bits (96), Expect = 0.053,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 52/157 (33%), Gaps = 8/157 (5%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQHLGLSL 65
           R        P     +   V+ GL  + AV  I+ +   +       + V+     G + 
Sbjct: 338 RRWNITAALPFFTRDLSELVKTGLSPAQAVVRIMERKTYNKQFDRFMKGVMRQIASGKTF 397

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM----KAKVQA 121
            E++  M         +      + +++  G   E  A L+   R+  ++    ++ V+ 
Sbjct: 398 YEAM--MAEGSKAPWFARVVLSATAEAERLGARHEIFAELADTSRELVDILKAARSNVRG 455

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158
             +    +  II  +   V   + F    Y + +   
Sbjct: 456 AVIFGLMTIAIIAVMLGGVVKTLLFQVADYASGITTT 492


>gi|332160536|ref|YP_004297113.1| general secretion pathway protein F [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664766|gb|ADZ41410.1| general secretion pathway protein F [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 402

 Score = 41.6 bits (96), Expect = 0.053,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   V A +P+ +A+A+I  Q +   V S   ++ +    G SLS+S+S+
Sbjct: 62  NRDLILITRQMSILVNAAIPLDEALALIENQSTKSKVDSVIHKIRKRVLEGHSLSDSLSQ 121

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                     +     +    +L G+L   L+NL+  +   + +K+K+    +       
Sbjct: 122 FPAI-----FNSLYRSMIAAGELSGHLGLVLSNLADHIEQTRKVKSKITQTLIYPAILVL 176

Query: 132 II 133
           + 
Sbjct: 177 VS 178


>gi|255994749|ref|ZP_05427884.1| putative bacterial type II secretion system protein F domain
           protein [Eubacterium saphenum ATCC 49989]
 gi|255993462|gb|EEU03551.1| putative bacterial type II secretion system protein F domain
           protein [Eubacterium saphenum ATCC 49989]
          Length = 353

 Score = 41.6 bits (96), Expect = 0.053,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 58/160 (36%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS------EFRR 54
           ++ + K+     L + P+ ++  +  + AG    DA+        +              
Sbjct: 197 LEKIRKESHQDVLMNLPSFINRYILLINAGAMPEDAMKRASESEKNMFGKGYFSELITDL 256

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
               +    SLS+ +      + + +    +++I+     G ++S  L   +++L   + 
Sbjct: 257 YDRAEKSKSSLSKELYDAALRLGIWQFIRVTSIITDSMYTGSDMSHKLTREAKMLWFERK 316

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
             A+ +    E K +  ++      +  ++    P  M++
Sbjct: 317 KLAESRGRLAEVKLTMPLLLL---LLVLMIVTIGPATMDM 353


>gi|146303434|ref|YP_001190750.1| type II secretion system protein [Metallosphaera sedula DSM 5348]
 gi|145701684|gb|ABP94826.1| type II secretion system protein [Metallosphaera sedula DSM 5348]
          Length = 615

 Score = 41.6 bits (96), Expect = 0.053,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 51/172 (29%), Gaps = 12/172 (6%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
           N L  I   +RAGL     +  I        +    +R+     LG  L ++  +    +
Sbjct: 395 NLLRAISEGIRAGLSPETIIKNIKESQEMGKLSYILKRIYAYISLGYPLRDAFLKGAEEI 454

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA----KVQALSMEAKASAWI 132
                      ++    +G    E++ +L+  +  +  +K     KV+ L         I
Sbjct: 455 VDFTSRISLVSMADMIDIGSLTPESIESLAEQVETQIKIKREYESKVKILLYTPYIGVII 514

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRG-------HMLLGVAAAFMLIGIM 177
                  +S  +     G      +   G         +   A A M+    
Sbjct: 515 SIIAVNLLSAAILGLITGNAYAFSSGALGEARVLLPQAVYITAIASMINAFF 566


>gi|28211266|ref|NP_782210.1| putative general secretion pathway protein F [Clostridium tetani
           E88]
 gi|28203706|gb|AAO36147.1| putative general secretion pathway protein F [Clostridium tetani
           E88]
          Length = 351

 Score = 41.6 bits (96), Expect = 0.053,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 51/138 (36%), Gaps = 6/138 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + +G+ V+DA+ +     +   V+S    + +  +LG ++SE++S      P
Sbjct: 14  FCKQLKLLMASGMNVTDALEITGDFFTRKSVKSSIEEIRKKVYLGENISEAMSYFRGIYP 73

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                 F   +    +  G L+E L  L     ++  +  K++ + +      +    + 
Sbjct: 74  -----SFLINMIKLGEDNGILTEVLEKLELYYENQCKISNKIKEIIIYPLFLIFFSIIIS 128

Query: 138 FCVSTLVYFTSPGYMNVL 155
             +S  +       +   
Sbjct: 129 LFLSGFILPQFESILRDF 146


>gi|17548688|ref|NP_522028.1| putative general secretion pathway GSPF-related transmembrane
           protein [Ralstonia solanacearum GMI1000]
 gi|17430936|emb|CAD17618.1| putative general secretion pathway gspf-related transmembrane
           protein [Ralstonia solanacearum GMI1000]
          Length = 397

 Score = 41.6 bits (96), Expect = 0.054,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 9/170 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   ++ R  K           +   +RAGL VS+A+  +  +   P    +R++ +   
Sbjct: 49  LARSLQSRRRKVDAGL--VCIELGGLLRAGLTVSEALDSLAHRDDHPNVGVYRQLYDGLL 106

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            GL LSES+ ++    P              ++  G + +AL   ++  + ++ ++ KV 
Sbjct: 107 SGLPLSESMKQVEGGFPG-----ILVAAIQANERSGRIPDALDEYAKYAQAQEALRKKVV 161

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN--VLINDPRGHMLLGVA 168
           + ++           +   +   V        +   +       +LL V 
Sbjct: 162 SAAVYPATVIGFGLLVVLFLLAYVIPRFAMVYDGTAMQMSGPTRILLAVG 211


>gi|117929187|ref|YP_873738.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
 gi|117649650|gb|ABK53752.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
          Length = 203

 Score = 41.6 bits (96), Expect = 0.055,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 48/143 (33%), Gaps = 5/143 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
            P A D++   +  G+    A+ ++V     D + +    V     LG S  ++ + +  
Sbjct: 62  LPLACDLLAACLETGVTSRRALELVVEALGRDSLNTPLPAVSSALRLGASAVQAWAEVPA 121

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-I 133
            +   EV+            G  L+  L  L+   R      A         + +  + +
Sbjct: 122 ELGWTEVAR---AFGQAENSGLALAGTLTRLADERRRTVRAWAAQATARAGVRMALPLGV 178

Query: 134 GSLPFCVSTLVYFTSPGYMNVLI 156
             LP  +   V     G+ + L 
Sbjct: 179 CFLPAFLLVGVLPVIFGFAHSLW 201


>gi|167947283|ref|ZP_02534357.1| type IV pilin biogenesis protein PilC [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 151

 Score = 41.3 bits (95), Expect = 0.056,   Method: Composition-based stats.
 Identities = 14/135 (10%), Positives = 41/135 (30%), Gaps = 5/135 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                    +     AG+P+ +A+  + G + + V SE         +   ++   S  +
Sbjct: 14  AAIARFARTLSTMSSAGVPLVEALESVSGATGNVVYSEAVL-----RMREDVATGQSLQL 68

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +    +  G+L + L+ ++    ++ +      +  +E      + 
Sbjct: 69  AMRQRHIFPNMVIQMVSIGEESGSLDDMLSKVADFFEEQVDNAVDALSSLLEPLIMVILG 128

Query: 134 GSLPFCVSTLVYFTS 148
             +   V  +     
Sbjct: 129 TLIGGLVVAMYLPIF 143


>gi|300779982|ref|ZP_07089838.1| membrane protein [Corynebacterium genitalium ATCC 33030]
 gi|300534092|gb|EFK55151.1| membrane protein [Corynebacterium genitalium ATCC 33030]
          Length = 232

 Score = 41.3 bits (95), Expect = 0.057,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 66/164 (40%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           L  +V ++RAG  V++A A    Q++D   ++    +           S + ++   PL 
Sbjct: 64  LGHLVAALRAGSSVAEACARAAEQTADNAPADLASELRRVAAHTRSGGSGAAILAASPLP 123

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
           E+     +  + ++LG  +++ L +    L +    +    A     +A+A ++  LP  
Sbjct: 124 ELRDVGVLWGLSAKLGIPVADLLGSARSRLDNAVRHRNATTAALAGPRATAVVLSVLPLA 183

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
              +        + +L     G +LL V  A +  G    + +I
Sbjct: 184 GILMGQAMGARPVALLTGGGLGGLLLLVGTALVCAGFATSQAII 227


>gi|153953739|ref|YP_001394504.1| ExeF3 [Clostridium kluyveri DSM 555]
 gi|219854357|ref|YP_002471479.1| hypothetical protein CKR_1014 [Clostridium kluyveri NBRC 12016]
 gi|146346620|gb|EDK33156.1| ExeF3 [Clostridium kluyveri DSM 555]
 gi|219568081|dbj|BAH06065.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 397

 Score = 41.3 bits (95), Expect = 0.059,   Method: Composition-based stats.
 Identities = 22/202 (10%), Positives = 61/202 (30%), Gaps = 35/202 (17%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
            +   N        + +G+ +   + +I  Q+ +  ++    R+IE    G +L+ES+  
Sbjct: 60  EEVLANFCGQTAMILNSGVNLLSGLEIIQQQTKNQNMKKVILRIIEGIKKGKNLAESMRA 119

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                  ++       + +  ++ GN+   L N+    +   +M  K++  S+       
Sbjct: 120 ------CEKFPKLLIDMVMTGEVSGNVDTVLYNMESFYKREASMNNKIKNASLYPTLILV 173

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML------------------ 173
           +   +    +  VY            +     ++ +     L                  
Sbjct: 174 VAVGMMLFFNFFVYPEIRDLFT--GENLPAVTIIVLGIMNFLNNNYLYIITGIIILIGIL 231

Query: 174 --------IGIMVMRLMINFDV 187
                   +     + ++   V
Sbjct: 232 KYMSTIPKVAYFWGKTVLKIPV 253


>gi|255657253|ref|ZP_05402662.1| putative type IV pilus-assembly protein [Clostridium difficile
           QCD-23m63]
 gi|296451908|ref|ZP_06893624.1| probable type IV pilus-assembly protein [Clostridium difficile
           NAP08]
 gi|296879699|ref|ZP_06903674.1| probable type IV pilus-assembly protein [Clostridium difficile
           NAP07]
 gi|296259222|gb|EFH06101.1| probable type IV pilus-assembly protein [Clostridium difficile
           NAP08]
 gi|296429288|gb|EFH15160.1| probable type IV pilus-assembly protein [Clostridium difficile
           NAP07]
          Length = 361

 Score = 41.3 bits (95), Expect = 0.060,   Method: Composition-based stats.
 Identities = 14/148 (9%), Positives = 45/148 (30%), Gaps = 6/148 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR  + +         +   + +G+ + +A+ +      +    E  ++        +  
Sbjct: 220 KRINQLVAT-TRFSRALSILISSGIQIVEAIDMSASVIDNEFIYERLKISNNYIKKGNSI 278

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
                +    P          ++   +  G L ++L  +++   +  N K +     +E 
Sbjct: 279 GKSLNLANIFPK-----LFISMTNTGEESGKLDKSLDVINKFYENELNNKIEQIMKFIEP 333

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154
               ++   +   V  +V        + 
Sbjct: 334 VLIVFMGLIIGIFVLAMVVPMFDAITSF 361


>gi|187925425|ref|YP_001897067.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
 gi|187716619|gb|ACD17843.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
          Length = 409

 Score = 41.3 bits (95), Expect = 0.060,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 46/156 (29%), Gaps = 2/156 (1%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   +RAGLP++ A+ ++    +   +   R V                       
Sbjct: 73  FTRQLASLLRAGLPLAPALDLLAQAETSRRQGMARIVGALARDITG--GLRFSAALQRHP 130

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
            + +     +    +  G L+  LA ++         +AKV+A      A   +  ++  
Sbjct: 131 AQFNALYCQLVEVGEAAGALAAVLARIADDRERAAAQRAKVRAALTYPVAILVLAMAITA 190

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
            +   V  T     +             +A +  + 
Sbjct: 191 ALLVWVVPTFKQIFDGFGARLPAPTQFVLALSSGVA 226


>gi|330893149|gb|EGH25810.1| type II secretion system, protein F domain [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 179

 Score = 41.3 bits (95), Expect = 0.061,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 49/101 (48%)

Query: 47  PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLS 106
           P++    R+     LG+SL ++           E   F+  + V  + GGN SE + NL 
Sbjct: 2   PLKDGMSRIERNVQLGVSLPDAARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLI 61

Query: 107 RILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           +++RDR+    +++A++ E + +A ++  LP  ++      
Sbjct: 62  KLIRDREQAGRQLRAMTGETRMTALVLALLPVGMAGYFLTV 102


>gi|300690940|ref|YP_003751935.1| type II secretion system protein F (gspF) [Ralstonia solanacearum
           PSI07]
 gi|299078000|emb|CBJ50642.1| putative type II secretion system protein F (gspF) [Ralstonia
           solanacearum PSI07]
          Length = 397

 Score = 41.3 bits (95), Expect = 0.061,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 9/170 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   ++ R  K           +   +RAGL VS+A+  +  +   P    +R++ +   
Sbjct: 49  LARSLQNRRRKVDAGL--VCIELGGLLRAGLTVSEALDSLAHRDDHPNVGVYRQLYDGLL 106

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            GL LSES+ ++    P              ++  G + +AL   ++  + ++ ++ KV 
Sbjct: 107 SGLPLSESMKQVEGVFPG-----ILVAAIQANERSGRIPDALDEYAKYAQAQEALRKKVV 161

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN--VLINDPRGHMLLGVA 168
           + ++           +   +   V        +   +       +LL V 
Sbjct: 162 SAAVYPATVIGFGLLVVLFLLAYVIPRFAMVYDGTAMQMSGPTRILLAVG 211


>gi|227825202|ref|ZP_03990034.1| predicted protein [Acidaminococcus sp. D21]
 gi|226905701|gb|EEH91619.1| predicted protein [Acidaminococcus sp. D21]
          Length = 395

 Score = 41.3 bits (95), Expect = 0.061,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 55/146 (37%), Gaps = 6/146 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   +++ +P+  A+ ++  + +  V    RR+ E    G SLS+++ R  + +      
Sbjct: 68  LGILLKSEIPILRALDIMGLRGNAKVAFLCRRIGEELKKGRSLSKALLRYEQAIG----- 122

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
             + V+    +  G  S     LS   R ++ +  ++            + G +      
Sbjct: 123 ALAPVLLEAGEKSGRTSVLCLRLSDSYRRKRELWKEMMGALFYPLLVLGLGGLVVLYFII 182

Query: 143 LVYFTSPGYMNVL-INDPRGHMLLGV 167
            +     G    L ++ P G  L+ +
Sbjct: 183 AILPLFVGLYGELNLSVPTGLSLMMI 208


>gi|315605668|ref|ZP_07880701.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312623|gb|EFU60707.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 425

 Score = 41.3 bits (95), Expect = 0.061,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 47/158 (29%), Gaps = 7/158 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVI-----VGQSSDPVRSEFRRVIETQHLGLSLSES 68
            +    +  +   +R+G P ++A  +       G + +  +    R++            
Sbjct: 103 RELSLLVAEVSTRLRSGSPAAEAWRLALGRIGAGGAEEQGQDSCPRIVAQWARTQGGWSL 162

Query: 69  ISRMVRYMPLQEVSFF--STVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            S   R       S F          +LG  L++ L  +   + D + +    +  S   
Sbjct: 163 PSARSRSPDAARSSAFSIVVACRYSHRLGAPLADVLDAIGGAIDDAQAVSEARRVASAGP 222

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
             SA ++ +LP       Y               G + 
Sbjct: 223 LMSARVLSALPLVGIVAAYSLGASPWAFYTGGGAGSLC 260


>gi|153951437|ref|YP_001398771.1| general secretory pathway protein F [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152938883|gb|ABS43624.1| general secretory pathway protein F [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 392

 Score = 41.3 bits (95), Expect = 0.061,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 56/181 (30%), Gaps = 10/181 (5%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
                ++F      +      GL V +A+  +            +++++   L  +L+++
Sbjct: 50  QRLKDENFILFFKELALLCEVGLSVQEAIKEL---YLMHSCKIMKKILDNLILAQNLNQA 106

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                       ++     +   ++  G +SE  + +S++       + +++        
Sbjct: 107 FENA-----NFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPTL 161

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMINFD 186
               I      +   V          L        H++L +       GI  + L + F 
Sbjct: 162 VFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDSYGIFCIFLFVVFI 221

Query: 187 V 187
           V
Sbjct: 222 V 222


>gi|111026115|ref|YP_708398.1| hypothetical protein RHA1_ro10047 [Rhodococcus jostii RHA1]
 gi|110824958|gb|ABH00240.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 299

 Score = 41.3 bits (95), Expect = 0.062,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 51/137 (37%), Gaps = 1/137 (0%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESI 69
           +F     + +D++    R G+  + ++          V       + E    G +   ++
Sbjct: 156 EFAQALSSYIDLVALCRRGGIGTTQSLERAAQVGDSWVFLRLDEELYEAGRSGEAPWNAL 215

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
           +R+ + + L E+   + ++++    G ++  +L   +  LR  +    +  A     K +
Sbjct: 216 TRVSQELGLTELGDLADIMNMTGDKGASVYASLRAKAAGLRSAQASAEQGAAAEATEKLA 275

Query: 130 AWIIGSLPFCVSTLVYF 146
             + G     +  L+  
Sbjct: 276 MPLAGLAGLFIMLLLIP 292


>gi|21228399|ref|NP_634321.1| hypothetical protein MM_2297 [Methanosarcina mazei Go1]
 gi|20906873|gb|AAM31993.1| conserved protein [Methanosarcina mazei Go1]
          Length = 645

 Score = 41.3 bits (95), Expect = 0.063,   Method: Composition-based stats.
 Identities = 14/162 (8%), Positives = 48/162 (29%), Gaps = 7/162 (4%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-------FRRV 55
             I+ R  +   +F ++L ++ R +  G    +A A            E           
Sbjct: 389 KKIRDRIKQMEQEFADSLFVLGRRISEGKAPEEAFAHTARTMEGSKIGEAYEGISMNLLS 448

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           + T        E           +  +          +       ++  L+  L++  ++
Sbjct: 449 MRTNLKDAVFDEEFGAFRHVYSERIRNTMLLFTESVHKNHEAAGASIIKLADHLKELSDV 508

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + +++    +  ++     ++   +   +       +  ++N
Sbjct: 509 EERIRRSLYDVTSTMRTTAAIFAPLIAGITLALSEVITKILN 550


>gi|304315797|ref|YP_003850942.1| type II secretion system F domain [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777299|gb|ADL67858.1| Type II secretion system F domain [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 275

 Score = 41.3 bits (95), Expect = 0.064,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 58/146 (39%), Gaps = 2/146 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQ 59
           ++ + K R  KF  + P  +D+      A +P+ D   +    + S  VR+   ++    
Sbjct: 117 IQSVRKDRIEKFRREMPEIVDLFELGATADVPLEDIFLITAQSAKSKEVRNAITKLAAEY 176

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            +      ++ +    + L E +  +  +    + G  + + L+ LS  L +    K   
Sbjct: 177 IMTREKEVALRKFANEVSLPEANVLAMALLQGDRTGRTV-DILSTLSSSLFNTAASKVAR 235

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVY 145
           Q  SME K  + I   +   V+  +Y
Sbjct: 236 QDKSMEYKVLSAIFFLMASIVTLYIY 261


>gi|154246051|ref|YP_001417009.1| type II secretion system protein [Xanthobacter autotrophicus Py2]
 gi|154160136|gb|ABS67352.1| type II secretion system protein [Xanthobacter autotrophicus Py2]
          Length = 403

 Score = 41.3 bits (95), Expect = 0.064,   Method: Composition-based stats.
 Identities = 17/143 (11%), Positives = 47/143 (32%), Gaps = 6/143 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
           +D       +   ++AG  + +A+ ++ G +    +R+  R++      G S +E+ +  
Sbjct: 64  EDVTLFTRDLALLLKAGARLDEALELLSGDADLGRMRAVVRKLRADVLAGQSFAEAAAGE 123

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +  P          +    +  G +   L  L++     + ++ K+             
Sbjct: 124 PKLFPP-----VYVALVRVGEASGTMDRILDLLAQERARAEQLRRKLMEALQYPAFVLAA 178

Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155
            G +       V       +  +
Sbjct: 179 AGGVLVFFLLFVLPQFSTVLRDM 201


>gi|84495077|ref|ZP_00994196.1| hypothetical protein JNB_09764 [Janibacter sp. HTCC2649]
 gi|84384570|gb|EAQ00450.1| hypothetical protein JNB_09764 [Janibacter sp. HTCC2649]
          Length = 246

 Score = 41.3 bits (95), Expect = 0.064,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 61/173 (35%), Gaps = 8/173 (4%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVG-----QSSDPVRSEFRRVIETQHLGLSLSESISR 71
            +  ++    + AGLP ++A  +         +         ++   Q  G  + + + R
Sbjct: 68  ADFAELSAVGLDAGLPAAEAARLACDVGGSAATRPEFAVLGEQITAAQGRGSPIGQCLLR 127

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +      ++++F +   S+  + G   + A    + +LR+R     +   L+   +AS W
Sbjct: 128 VAE--GDRDLAFLAAAWSLTDEFGVAAAPAARASAAVLRERAESDDRRMVLAAGPRASMW 185

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           ++  LP     +        +  +       +   V       G +  R ++ 
Sbjct: 186 LLTLLPLTGPLVALVLGL-PVGDVYGSTASLVAAVVGLVLTGCGWLWSRTVLR 237


>gi|255324192|ref|ZP_05365314.1| putative membrane protein [Corynebacterium tuberculostearicum
           SK141]
 gi|255298708|gb|EET78003.1| putative membrane protein [Corynebacterium tuberculostearicum
           SK141]
          Length = 198

 Score = 41.3 bits (95), Expect = 0.065,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 41/124 (33%), Gaps = 3/124 (2%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           +++    + AGL V  A   +   +    +  +  V     +G+    +   M  +  L+
Sbjct: 64  VELFAACLAAGLSVHGATTAVARTADAQTKELWETVAALLGVGVPAQSAWGHMKSHAGLE 123

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
           +    + ++ +  Q G  ++     +   LR   +  A  QA       +  +       
Sbjct: 124 D---LAQLVIMSGQSGATIAAGCQRICTSLRAEASAHATAQAERAGVFIALPLAVCFLPA 180

Query: 140 VSTL 143
              L
Sbjct: 181 FIVL 184


>gi|291614290|ref|YP_003524447.1| type II secretion system F domain protein [Sideroxydans
           lithotrophicus ES-1]
 gi|291584402|gb|ADE12060.1| Type II secretion system F domain protein [Sideroxydans
           lithotrophicus ES-1]
          Length = 396

 Score = 41.3 bits (95), Expect = 0.065,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 49/147 (33%), Gaps = 6/147 (4%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                  +   + AGL   +A+  ++  +     R+  +RVI + + G +LS ++ +   
Sbjct: 60  LMLFSQELRALLDAGLTQVEALETMVEKERHPHNRNILQRVILSLYEGHALSHALQQFPE 119

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
             P              S+  G+L E+LA           ++ KV + S+          
Sbjct: 120 IFPP-----LYIATIHASEKTGDLDESLARYIDYQSRMDVVRKKVVSASIYPMLLLGTGA 174

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRG 161
            +   +   V          + +D   
Sbjct: 175 LVTLFLMLYVVPRFSKVYEDIGSDLPF 201



 Score = 40.1 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/134 (11%), Positives = 39/134 (29%), Gaps = 6/134 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                   +   +R G+P+  A+ ++ G     +R +     +    G  +S ++     
Sbjct: 262 QLARFYRTLGMLLRGGIPIVMALEMVSGLLEQALRKQLALASDCIREGQPISYAMETYGL 321

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
             P       +  +    +  G + E    ++    +             E    A+I  
Sbjct: 322 TTP------VALRLLRVGEHTGGMGEMTERIANFYDEEMARWVDWFTRLFEPLLMAFIGL 375

Query: 135 SLPFCVSTLVYFTS 148
            +   V  + +   
Sbjct: 376 VIGGIVILMYFPIF 389


>gi|220927574|ref|YP_002504483.1| hypothetical protein Ccel_0115 [Clostridium cellulolyticum H10]
 gi|219997902|gb|ACL74503.1| hypothetical protein Ccel_0115 [Clostridium cellulolyticum H10]
          Length = 319

 Score = 41.3 bits (95), Expect = 0.065,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 64/183 (34%), Gaps = 12/183 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+ IK+R        P  +D    S  +   +  A+      S+  +     RV ++  
Sbjct: 148 LKYSIKQRI-------PAFIDSFRSSFVSHNRIKPALQECCSNSNKHLGRIMLRVSDSSD 200

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           L  SL     R+         + F T++    + GG L   L  L++ +    N++ K  
Sbjct: 201 LNDSLRAVRDRISDTW----FNIFVTLLVNYRENGGELINQLYKLNKTITRYNNIEKKKN 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY-FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
              +  +            V  L+        M +  N  +    + + +   LI + ++
Sbjct: 257 RRLIWYEFFTLGASIFSLPVIMLINRMILGTNMRLYYNTAQASGKIAIYSISALIVVRIL 316

Query: 180 RLM 182
           R +
Sbjct: 317 RRL 319


>gi|320120323|gb|EFE28506.2| type IV pilus biogenesis protein PilC [Filifactor alocis ATCC
           35896]
          Length = 361

 Score = 41.3 bits (95), Expect = 0.066,   Method: Composition-based stats.
 Identities = 15/169 (8%), Positives = 52/169 (30%), Gaps = 4/169 (2%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
                   +++G+ ++ ++ V+  QS      +    +       +              
Sbjct: 27  FCRQESIMLKSGMDLNRSLDVLAKQSKSKKLKKNLFHLSDSVKKGT----ELSKSMENQG 82

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
               +         ++ G ++E +  ++        ++ K++   M     A+I+ +   
Sbjct: 83  NAFPYLLKRTVQAGEMSGQMAEIIEKMAVHYEKDMKLRRKIRGAMMYPIILAFIVVAAVA 142

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
            + T V             +        +  + +L+   +  L++ F +
Sbjct: 143 ILLTQVMPNFVKMFEGADMELPALTRFVMNLSDLLVHNWIWILLVLFAI 191



 Score = 38.9 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 9/130 (6%), Positives = 32/130 (24%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+P+  A+      + +          + +     + + +    +    
Sbjct: 230 FTRTLSTMLYSGIPMIQALRAAGETTGNKFVE-----SKIEETVEGIEKGMGMTAQLAAT 284

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G L E L   +    +      +     +E      +   +  
Sbjct: 285 NIFPPMMLSMIGIGEESGRLDEMLEKTAEYYDEEMEAALEALVTMLEPLLIVIMGVVIGT 344

Query: 139 CVSTLVYFTS 148
            V  +     
Sbjct: 345 IVIAMYLPMF 354


>gi|109899536|ref|YP_662791.1| type II secretion system protein [Pseudoalteromonas atlantica T6c]
 gi|109701817|gb|ABG41737.1| type II secretion system protein [Pseudoalteromonas atlantica T6c]
          Length = 396

 Score = 41.3 bits (95), Expect = 0.066,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 54/190 (28%), Gaps = 25/190 (13%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65
           +R        P  L  +     +G+ + DA+  +        +   F  +      G SL
Sbjct: 53  RRVKVTDLVIP--LQELATLTSSGVALIDAIKALGQNKEHPNLAKGFMLMASRIEGGESL 110

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S ++       P      +   +    +LGG L  AL N S  L   + +K  V+     
Sbjct: 111 SAALMASGLPFPQ-----YVAHLVSAGELGGQLPIALTNASEQLNYEQAIKNDVRGALTY 165

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMN-----------------VLINDPRGHMLLGVA 168
                    +    +   V       ++                  + + P   +   V 
Sbjct: 166 PLVLIGSGLAAMLIIFFAVVPKFSHLLDGEKELPALAYLVLTAGQAVNDSPYTVLAFIVG 225

Query: 169 AAFMLIGIMV 178
              ++  I +
Sbjct: 226 IVILIASIFM 235


>gi|297543560|ref|YP_003675862.1| Type II secretion system F domain-containing protein
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296841335|gb|ADH59851.1| Type II secretion system F domain protein [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 274

 Score = 41.3 bits (95), Expect = 0.067,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 2/156 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59
           +  + K R  KF  + P  +D+      A +P+ D   +    +    VR+   ++    
Sbjct: 116 ISSVKKDRQEKFRREMPEIVDLFELGAAADVPLEDIFLITAQSAQAKEVRNALTKLAAEY 175

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            +       + R    + L E +  +  +    + G  L E L+ LS  L +    K   
Sbjct: 176 IMTREKEGCLKRFCNEVNLPEANILAMALLQGERTGRTL-EILSVLSSSLFNTAAAKIAR 234

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           Q  +ME K  A     +   V+  +Y         L
Sbjct: 235 QDKAMEYKVLAATFFLMASIVTLYMYPYFTNIQGGL 270


>gi|121998800|ref|YP_001003587.1| type II secretion system protein [Halorhodospira halophila SL1]
 gi|121590205|gb|ABM62785.1| type II secretion system protein [Halorhodospira halophila SL1]
          Length = 396

 Score = 41.3 bits (95), Expect = 0.067,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 48/160 (30%), Gaps = 7/160 (4%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           L  +   + AG P+S+A+ V   Q+ D       R +       +               
Sbjct: 63  LRRLASVLEAGAPLSEALRVTAAQAPDAALRNGLRGVRYAVERGT----DLATAFGTEFP 118

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
            +      +       G+L  AL +++  +     + A+++           + G+    
Sbjct: 119 GLRPAHRALLAAGTWTGDLPAALGSVAAEIEREAAIVAQLRRALTYPA---VVAGAALTL 175

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           ++ L+    P +  +             A      G  V+
Sbjct: 176 IALLLTAVVPRFAGLFEQSGEPLPAPTRAVLAASEGFAVV 215



 Score = 33.9 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 38/137 (27%), Gaps = 5/137 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
                      + R   AG+P+ DA+      +         R+        +       
Sbjct: 259 LEAALSRWSATLARLHGAGVPLLDALPRAAEAARG--ADLEPRLAHLGQRIGAGESLAEA 316

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           + + +P    S   + +    +  G L E L   + + + R   + +     +E      
Sbjct: 317 LRKSLPE---SREISQLVAIGERSGRLEELLHEAATLHQQRLEARLQRAGALLEPALILL 373

Query: 132 IIGSLPFCVSTLVYFTS 148
           +       V+ L     
Sbjct: 374 LGAITAGVVAALYLPVF 390


>gi|311741045|ref|ZP_07714870.1| membrane protein [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311303847|gb|EFQ79925.1| membrane protein [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 198

 Score = 41.3 bits (95), Expect = 0.068,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 41/124 (33%), Gaps = 3/124 (2%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           +++    + AGL V  A   +   +    +  +  V     +G+    +   M  +  L+
Sbjct: 64  VELFAACLAAGLSVHGATTAVARTADAQTKELWETVAALLGVGVPAQSAWGHMKGHAGLE 123

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
           +    + ++ +  Q G  ++     +   LR   +  A  QA       +  +       
Sbjct: 124 D---LAQLVIMSGQSGATIAAGCHRICTSLRAEASAHATAQAERAGVFIALPLAVCFLPA 180

Query: 140 VSTL 143
              L
Sbjct: 181 FIVL 184


>gi|213966042|ref|ZP_03394231.1| type II secretion system protein [Corynebacterium amycolatum SK46]
 gi|213951337|gb|EEB62730.1| type II secretion system protein [Corynebacterium amycolatum SK46]
          Length = 217

 Score = 41.3 bits (95), Expect = 0.070,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 50/140 (35%), Gaps = 6/140 (4%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           II   + +G+P+S A+      ++  +    R+      +G     + S          +
Sbjct: 81  IIGACLSSGMPLSQAMEAAADGANPELAEPLRQCSARLAVG-----AHSAWDSLAATPAL 135

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IGSLPFCV 140
              +T     S+ G  L++AL + +   R + +  A+  A       +  + +  LP  V
Sbjct: 136 EPLATAGRRASESGTVLAQALEDTAATYRSQAHDAAQAVAEKAGVLIAGPLALCFLPAFV 195

Query: 141 STLVYFTSPGYMNVLINDPR 160
              +  T  G  + +     
Sbjct: 196 VLGLVPTIAGLADEMFAGLM 215


>gi|94968603|ref|YP_590651.1| type II secretion system protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94550653|gb|ABF40577.1| type II secretion system protein [Candidatus Koribacter versatilis
           Ellin345]
          Length = 403

 Score = 41.3 bits (95), Expect = 0.070,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 50/164 (30%), Gaps = 7/164 (4%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLS 66
           R       F       +  VRAGLP+  ++ +++ +  +   +     V +    G  LS
Sbjct: 56  RRKVSAQQFLIFNQQFLTLVRAGLPIVQSMELLMRRQKNQYFQKVLEDVRDRLKGGSLLS 115

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E+                 T   +  +  GNL E +       R   + + K+ A  +  
Sbjct: 116 EAFEAQG------IFPKIYTTTLLAGEKSGNLEEVVGRYIAFQRLLLSFRKKLIASLIYP 169

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
                 +  L   + T V          L +D        +A  
Sbjct: 170 SILVCGVVVLFSMLITWVVPRFALLFQDLGSDLPAITKFVLAFG 213



 Score = 35.5 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 39/138 (28%), Gaps = 7/138 (5%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESIS 70
                     ++   +  GLP+  ++        S  +    R   ++   G SL+ S+ 
Sbjct: 262 LKSQVSTFSRMLSTLLGGGLPLVPSLETAAASIGSKTLARGIRTASKSVREGRSLARSLE 321

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
               +         S  +    +  G L + L +++    +            +E     
Sbjct: 322 ATAAFPD------LSVEMIEVGESTGALPQMLVSVAEFYEEDVQNALAAAMSLVEPVILI 375

Query: 131 WIIGSLPFCVSTLVYFTS 148
            +   + F +  L     
Sbjct: 376 IMGMVVGFILIALYLPIF 393


>gi|307352531|ref|YP_003893582.1| type II secretion system F domain-containing protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307155764|gb|ADN35144.1| Type II secretion system F domain protein [Methanoplanus
           petrolearius DSM 11571]
          Length = 600

 Score = 41.3 bits (95), Expect = 0.072,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 46/129 (35%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
            +     P  L  I      G+ +  A+ ++       + SE +        G S+S ++
Sbjct: 397 RRVEAQMPEFLRDIADMKDLGMTLQTAIEMVSSSKLGLLSSELKIASREVKWGYSVSSAL 456

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            RM   + L  V    ++I   S++   L + L      L     M++K   +S    A 
Sbjct: 457 VRMEERIGLVSVKRAISLIVKASEITDQLRDILTIAISDLDHYLKMQSKRFNVSFVYLAV 516

Query: 130 AWIIGSLPF 138
            ++   +  
Sbjct: 517 IYLSFGIYL 525


>gi|328461764|gb|EGF34000.1| competence protein [Lactobacillus helveticus MTCC 5463]
          Length = 319

 Score = 41.3 bits (95), Expect = 0.072,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 60/167 (35%), Gaps = 13/167 (7%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
              LD +  S+  G  + +++ ++        +   +++++    G S S  + ++    
Sbjct: 4   SFFLDYLKHSLENGFSLINSIELMPVLWPKK-KELMQKLVKRMKEGNSFSVELIQLG--- 59

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
                S  +      +   GNL E L  L+ + R ++    K++A        A ++  L
Sbjct: 60  ----FSKTTVTQVNLALQQGNLIECLNQLAILSRLKQEQVKKLRAELSYPFVLAIMMVIL 115

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
              + + +                G +++      +L GI  +  +I
Sbjct: 116 LVFMQSFISTQFNDRSEY-----SGDLIMLGLIGAVLAGIYFLARII 157


>gi|270284549|ref|ZP_05966317.2| conserved hypothetical protein [Bifidobacterium gallicum DSM 20093]
 gi|270276411|gb|EFA22265.1| conserved hypothetical protein [Bifidobacterium gallicum DSM 20093]
          Length = 273

 Score = 41.3 bits (95), Expect = 0.072,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 48/153 (31%), Gaps = 8/153 (5%)

Query: 39  VIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNL 98
            +   S    ++     I      +      + + ++  + +     T+++        L
Sbjct: 116 QLAHSSHRVTQAHQPMRIRDSMGRMQPHLLRAMLAQHCSVADSDQQLTLVAQGLLAAHML 175

Query: 99  SEALA-NLSRILRDRKNMKAKVQ-------ALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150
           S  L    +      +   A+++             +++  ++  LP     L       
Sbjct: 176 SAQLGCRAAVCCEAVRLAHARMRLQADLTANAFAMPRSTVRVLSVLPALTLLLGELLGAH 235

Query: 151 YMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            +  L     G + L V A    +G+  MR+++
Sbjct: 236 PIAFLCGSVLGWVCLCVGALCWGVGLWWMRMLL 268


>gi|311744032|ref|ZP_07717838.1| integral membrane protein [Aeromicrobium marinum DSM 15272]
 gi|311313162|gb|EFQ83073.1| integral membrane protein [Aeromicrobium marinum DSM 15272]
          Length = 304

 Score = 41.3 bits (95), Expect = 0.073,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 62/155 (40%), Gaps = 1/155 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    K+R   F       LD++  ++  G  V +A++   G S        R  +E+  
Sbjct: 150 LSTEAKERRRDFRHVVSAFLDLVSMNLAGGRGVPEALSAAAGLSDGWAMVRLRDAMESAR 209

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           L   +   ++  +   M ++E+S  +  +++ ++ G  + ++LA  +  +R R+   A+ 
Sbjct: 210 LQGVTPWAALGDLGDEMAVKELSDLAAALALVAEDGAKVRQSLAARAASMRQRELTDAEG 269

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +A           +      +  L+Y      + V
Sbjct: 270 RAEQQSQSMLVAQLLLCLGFLLFLIYPAIANVVGV 304


>gi|195953607|ref|YP_002121897.1| type II secretion system protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195933219|gb|ACG57919.1| type II secretion system protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 359

 Score = 41.3 bits (95), Expect = 0.073,   Method: Composition-based stats.
 Identities = 19/163 (11%), Positives = 51/163 (31%), Gaps = 8/163 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71
             D   +L  I   + AG  +  A+ + +  Q    ++  ++ + +   +G  L  + ++
Sbjct: 26  RKDIAFSLKQIYELINAGANLYTAIDIAIDLQDKPILKELYQNIKKDIEMGKPLHIAFAK 85

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                         + +   ++   NL      +   L +  + K+KV + ++       
Sbjct: 86  KPLPP-------ILSNMLYAAETSENLENVFKTVGDFLENMDSYKSKVISKAVYPSIVTL 138

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
                 F     V       +           +  +  A M++
Sbjct: 139 FSILAVFISVNYVIPRIEDVLKSFNAKLPFITIFLMYFAKMVV 181


>gi|119719687|ref|YP_920182.1| type II secretion system protein [Thermofilum pendens Hrk 5]
 gi|119524807|gb|ABL78179.1| type II secretion system protein [Thermofilum pendens Hrk 5]
          Length = 284

 Score = 40.9 bits (94), Expect = 0.077,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 59/164 (35%), Gaps = 9/164 (5%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAV-IVGQSSDPVRSEFRRVIETQHL 61
           + +  R      D P     +     +G+ +   +   ++ +S+  ++ E   ++     
Sbjct: 94  YRVYSRRITIEKDLPFTASYMAALSSSGMGLERLLERAVLYESNKEIKREIALILRDIKA 153

Query: 62  GL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL--RDRKNMKAK 118
                  ++SR     P + ++     +       GN    L++ S +L     ++++  
Sbjct: 154 YGLDTLTALSRAALRSPSRSLAMLWLGLRETYITSGNFKSYLSHFSGVLLSEKTQSLRRV 213

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162
              +SM A+    ++ + P    T++       M++L     G 
Sbjct: 214 TNTISMMAEVYTTLMVAAPLMFVTMLVI-----MDMLGGTVFGL 252


>gi|254773479|ref|ZP_05214995.1| hypothetical protein MaviaA2_02210 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 97

 Score = 40.9 bits (94), Expect = 0.078,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 39/93 (41%)

Query: 92  SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
              G  ++  +    R + +R+   A+V +    A+A+A I+ +LP     L        
Sbjct: 1   GDHGLGIATLMRAAQRDIAERQRFSARVSSSLAGARATAAILAALPVLGVLLGQLIGARP 60

Query: 152 MNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           ++ L+    G  LL V A     G++    +++
Sbjct: 61  LDFLLGGQVGGWLLLVGATLACAGLLWADRIVD 93


>gi|322421239|ref|YP_004200462.1| general secretion pathway protein F [Geobacter sp. M18]
 gi|320127626|gb|ADW15186.1| general secretion pathway protein F [Geobacter sp. M18]
          Length = 400

 Score = 40.9 bits (94), Expect = 0.079,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 59/186 (31%), Gaps = 24/186 (12%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           D   A   +   + + +PV ++VA +   ++   ++    RV +    G  L+++++   
Sbjct: 62  DLSLATRRLATLLGSAVPVYESVATLWEQEAPGELKRVLGRVRDRLAEGQGLAQALAAEP 121

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           +       S     +    +  G L   L  L+    D+  ++++V    +       + 
Sbjct: 122 Q-----VFSESYVGMVAAGEASGALEVVLERLAEFQEDQAEVRSRVITALIYPAIMVVVG 176

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR---------------GHMLLGVAAAFMLIGIMV 178
             +   +   V                               G   LG+AA   + G   
Sbjct: 177 IGVMMVLLGFVVPKISAVFESNKATLPLVTVLLIKASTLVRKGWWALGIAAIAAVAGW-- 234

Query: 179 MRLMIN 184
            + M+ 
Sbjct: 235 -KRMMR 239


>gi|159039935|ref|YP_001539188.1| hypothetical protein Sare_4420 [Salinispora arenicola CNS-205]
 gi|157918770|gb|ABW00198.1| conserved hypothetical protein [Salinispora arenicola CNS-205]
          Length = 330

 Score = 40.9 bits (94), Expect = 0.080,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 41  VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSE 100
                     +   +      GL + ++        P   +      + +  + G  L+E
Sbjct: 182 AEGLRRRHLDQLCDLAADLRAGLPVGQAAPLPAGGEPGSTLLR--AAVRLADRTGAPLAE 239

Query: 101 ALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
            L  +    R      A   A +  A+A+AW++ +LP     L +      + VL++   
Sbjct: 240 LLDRIDADARAADRGLAAAAAQAAGARATAWLLAALPLGGIGLGFGIGVDPVAVLLHSTA 299

Query: 161 GHMLLGVAAAFMLIGIMVMRLMINFD 186
           G   L +A    + G+     +    
Sbjct: 300 GVACLLLAVVLQVAGLFWAERLTAIR 325


>gi|315634801|ref|ZP_07890083.1| type IV pilus assembly protein PilC [Aggregatibacter segnis ATCC
           33393]
 gi|315476353|gb|EFU67103.1| type IV pilus assembly protein PilC [Aggregatibacter segnis ATCC
           33393]
          Length = 407

 Score = 40.9 bits (94), Expect = 0.082,   Method: Composition-based stats.
 Identities = 19/172 (11%), Positives = 63/172 (36%), Gaps = 6/172 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
             +    L  +   ++A +P+  ++ +++   ++  +    R ++     GL+ S+++ +
Sbjct: 57  NAEICALLSQLATLLQASVPLKHSLQILLQNCTNIALNQWLRLLLRDIERGLAFSQALEQ 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              Y+  QE       +    ++ G L+     +++  +    ++ K+Q + +       
Sbjct: 117 QGLYLTYQER-----QLIQVGEMTGKLAAVCHEIAQHKQQALALQRKMQKILLYPVLVLG 171

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           I  +L   +   +        +           L +  +  L    +  L++
Sbjct: 172 ISLTLTVLLLLFIVPQFAAMYDNNSAQLPAFTQLLLTLSQGLQNYWLALLIV 223



 Score = 37.4 bits (85), Expect = 0.97,   Method: Composition-based stats.
 Identities = 13/137 (9%), Positives = 43/137 (31%), Gaps = 4/137 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR----VIETQHLGLSLSESISR 71
             +    +   ++AG+P++ A+   + +          +    +I      L   +    
Sbjct: 264 LVSFSRSLFLMLQAGIPLNQALQSFLPKQQSWQTKPQLQGDLVLIAEVQSTLHWIQQGYP 323

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
               +  Q     +  +    +  G L + L  ++   + + + +  + +  +E      
Sbjct: 324 FSASVSGQIFPPAAQQMLQVGEQSGQLPKMLQFIANDHQQQLDHQIDLLSQMLEPLLMVI 383

Query: 132 IIGSLPFCVSTLVYFTS 148
           I G +   +  +     
Sbjct: 384 IGGLIGLIMLGMYLPIF 400


>gi|315186872|gb|EFU20630.1| Type II secretion system F domain [Spirochaeta thermophila DSM
           6578]
          Length = 398

 Score = 40.9 bits (94), Expect = 0.085,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 44/146 (30%), Gaps = 7/146 (4%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESI 69
               +  +    +    + G+ V +A+ V      +  +R E  R       G SL+E +
Sbjct: 259 AMKREMFDFCFAMEVLSKGGVSVDEALGVAAESVENAALREEVSRARARVMKGASLAEVL 318

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
                      +           +  G   E  A++ R   +    +  V    ME   S
Sbjct: 319 G------GSSLIPAVVRQWVGVGERTGATEEVFAHMRRFFGEELEQEISVLLNLMEPLTS 372

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVL 155
             I   +   V   +      Y ++L
Sbjct: 373 VIIGMFILILVLVFIVPIFTTYGSLL 398


>gi|222478632|ref|YP_002564869.1| hypothetical protein Hlac_0194 [Halorubrum lacusprofundi ATCC
           49239]
 gi|222451534|gb|ACM55799.1| conserved hypothetical protein [Halorubrum lacusprofundi ATCC
           49239]
          Length = 608

 Score = 40.9 bits (94), Expect = 0.085,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 47/146 (32%), Gaps = 9/146 (6%)

Query: 6   KKR-----TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++R             P+A+ +I   V  G+ V  A+A    +        F R      
Sbjct: 339 RRRAVLSNVRAVERSLPDAMTVIGGDVAEGVAVETAIANAGERLDGATGELFERAGRRSD 398

Query: 61  -LGLSLSESISRM---VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
            L + + E+          +P   V     +++V  + G    + L  L+  L + + ++
Sbjct: 399 TLRVDVREAFLGRGGPAVPVPSPRVQGAVALLAVAGREGRPAGDVLLELADQLEELRELE 458

Query: 117 AKVQALSMEAKASAWIIGSLPFCVST 142
              +        +     ++   +  
Sbjct: 459 NDARRQLATVTGTLTNTAAVFAPLVG 484


>gi|296118089|ref|ZP_06836671.1| membrane protein [Corynebacterium ammoniagenes DSM 20306]
 gi|295968975|gb|EFG82218.1| membrane protein [Corynebacterium ammoniagenes DSM 20306]
          Length = 208

 Score = 40.9 bits (94), Expect = 0.089,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 4/130 (3%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           +++ V  VRAGL +  A + +   + +P  + +++V     LG+    +   M    P+ 
Sbjct: 74  IELFVACVRAGLSIQQATSAVSVVAEEPTVTYWKQVNSLLALGVEPERAWVHM---QPVP 130

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IGSLPF 138
            +   + ++ +    G  ++     L   LR      A  +A       S  + +  LP 
Sbjct: 131 GLQELARLVMMSEHSGAAIASGCQRLVDTLRADATSSAIAKAERAGVFISLPLALCFLPA 190

Query: 139 CVSTLVYFTS 148
            +   +    
Sbjct: 191 FIILGLVPVV 200


>gi|226349292|ref|YP_002776406.1| hypothetical membrane protein [Rhodococcus opacus B4]
 gi|226245207|dbj|BAH55554.1| hypothetical membrane protein [Rhodococcus opacus B4]
          Length = 299

 Score = 40.9 bits (94), Expect = 0.093,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 50/137 (36%), Gaps = 1/137 (0%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESI 69
           +F     + +D++    R G+  + ++          V       + E    G +   ++
Sbjct: 156 EFAQALSSYIDLVALCRRGGIGTTQSLERAAQVGDSWVFLRLDEELYEAGRSGEAPWNAL 215

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
           +R+   + L E+   + ++++    G ++  +L   +  LR  +    +  A     K +
Sbjct: 216 TRVSHELGLTELGDLADIMNMTGDKGASVYASLRAKAAGLRSAQASAEQGAAAEATEKLA 275

Query: 130 AWIIGSLPFCVSTLVYF 146
             + G     +  L+  
Sbjct: 276 MPLAGLAGLFIMLLLIP 292


>gi|55378590|ref|YP_136440.1| hypothetical protein rrnAC1849 [Haloarcula marismortui ATCC 43049]
 gi|55231315|gb|AAV46734.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 360

 Score = 40.9 bits (94), Expect = 0.094,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 49/154 (31%), Gaps = 6/154 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGL 63
           ++ R        PNAL  + R +  G  V  A+   V ++               +HLG 
Sbjct: 138 VRGRITDIEAGLPNALSAVGRRLDRGQSVEAALVEAVDETPKPTSAVIKAAAARQEHLGT 197

Query: 64  SLSESIS----RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           S+  +       +      +     +T++   + +G     ++  +   L   + ++ + 
Sbjct: 198 SVEGAFLGPGGALADVPSHRAC-RVATLLDTAAAIGPPAGASVTTMGEHLDALRTIERET 256

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153
           +    +   +     +L   +         G M 
Sbjct: 257 RRDLSQITETLSNTAALFGPLVGGATVALAGSMG 290


>gi|220929813|ref|YP_002506722.1| type II secretion system protein [Clostridium cellulolyticum H10]
 gi|220000141|gb|ACL76742.1| type II secretion system protein [Clostridium cellulolyticum H10]
          Length = 405

 Score = 40.9 bits (94), Expect = 0.095,   Method: Composition-based stats.
 Identities = 15/136 (11%), Positives = 42/136 (30%), Gaps = 5/136 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   +++G+ +  A+ V+ G  ++ + S     ++      S+    +       +
Sbjct: 273 FTRTLSTLLKSGVSLVHALEVVDGVVNNQIVSRGLIKVKE-----SIKMGSNLAAPLEKM 327

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                  T +    +  G+L   +  ++    +            ME      +   + F
Sbjct: 328 GIFPLMVTHMISVGEEAGSLDSIMEKVADFYDEEVETSVSKLVAMMEPLLMMVLAIIVGF 387

Query: 139 CVSTLVYFTSPGYMNV 154
            V  ++      Y  V
Sbjct: 388 IVVAMILPIFSMYQGV 403


>gi|254409511|ref|ZP_05023292.1| Bacterial type II secretion system protein F domain [Microcoleus
           chthonoplastes PCC 7420]
 gi|196183508|gb|EDX78491.1| Bacterial type II secretion system protein F domain [Microcoleus
           chthonoplastes PCC 7420]
          Length = 312

 Score = 40.5 bits (93), Expect = 0.096,   Method: Composition-based stats.
 Identities = 11/165 (6%), Positives = 48/165 (29%), Gaps = 15/165 (9%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                     + + + +G+ +  ++ ++    +  V+   ++V      G   + ++   
Sbjct: 3   NRQNAKIFSQLAKLLNSGINLQQSLTLVGNDLNPAVKRYLQKVSLAVGSGQDFATAL--- 59

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 +  + ++  +   ++  G+L +    L+     +   +       +        
Sbjct: 60  --TCERRYFNRWTISLIRLAEYSGSLPQTCQILAEDAETQARQER------LYGSVKRSA 111

Query: 133 IGSLPFCVSTLVYFTSPGYMNV----LINDPRGHMLLGVAAAFML 173
           I ++   +       +P    +             LL      ++
Sbjct: 112 IATIWGFLVLTAAIFNPNATGIIKPEFWLRGLAIALLLWVMIVLV 156


>gi|85058440|ref|YP_454142.1| hypothetical protein SG0462 [Sodalis glossinidius str. 'morsitans']
 gi|84778960|dbj|BAE73737.1| hypothetical protein [Sodalis glossinidius str. 'morsitans']
          Length = 411

 Score = 40.5 bits (93), Expect = 0.096,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 6/113 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71
                   D +   + AGLP+ +++ ++  +      R    ++      GL+LS + + 
Sbjct: 161 RRALITLTDRLASLLHAGLPLRESLTLLAAEYPRAGWRCLLAQIGADIERGLTLSRACAA 220

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             +  P          +    +L G L    A L++       ++ +V    +
Sbjct: 221 WPQVFPPVW-----CAMFALGELTGRLDSCCAELAQSEARLWRIRQQVMRSLL 268


>gi|91775695|ref|YP_545451.1| type II secretion system protein [Methylobacillus flagellatus KT]
 gi|91709682|gb|ABE49610.1| type II secretion system protein [Methylobacillus flagellatus KT]
          Length = 395

 Score = 40.5 bits (93), Expect = 0.097,   Method: Composition-based stats.
 Identities = 10/134 (7%), Positives = 34/134 (25%), Gaps = 6/134 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                   +   ++ G+P+   + ++       ++ + +        G  LS ++     
Sbjct: 261 QLARFYRTLGMLLQGGIPLVTGMQMVASLLQPSLKHQLQLAEHDIREGKPLSSAMEEHGM 320

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                     +  +    +  G + E +  +     +            +E      I  
Sbjct: 321 TT------SIALRMLRVGERTGRMGEMMERIGSFYDEEIARAVDWFTRLLEPLLMVVIGL 374

Query: 135 SLPFCVSTLVYFTS 148
            +   V  +     
Sbjct: 375 IIGVVVVLMYMPIF 388


>gi|115376375|ref|ZP_01463612.1| flp pilus assembling protein [Stigmatella aurantiaca DW4/3-1]
 gi|115366582|gb|EAU65580.1| flp pilus assembling protein [Stigmatella aurantiaca DW4/3-1]
          Length = 90

 Score = 40.5 bits (93), Expect = 0.097,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 53/90 (58%)

Query: 98  LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           ++E    +S ++R+R  ++ K+ AL+ + K   WI+ S+P  +  ++    P  M  +++
Sbjct: 1   MAEMFETISMVIRERFRLEGKIDALTSQGKLQGWIVASMPAVLGMVLNSMRPDLMEPMMD 60

Query: 158 DPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
              G++L+ V A   ++GI+++R ++N D+
Sbjct: 61  HMFGYVLVTVIAIMEILGILIIRRIVNIDI 90


>gi|323694362|ref|ZP_08108535.1| hypothetical protein HMPREF9475_03399 [Clostridium symbiosum
           WAL-14673]
 gi|323501602|gb|EGB17491.1| hypothetical protein HMPREF9475_03399 [Clostridium symbiosum
           WAL-14673]
          Length = 404

 Score = 40.5 bits (93), Expect = 0.099,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 51/161 (31%), Gaps = 10/161 (6%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET--- 58
           +   KKR  + + D+   L  +V  + AGLPV  A A IV           +R       
Sbjct: 244 QEAKKKRECQMMMDYSEILSRLVVFLGAGLPVRKAWAKIVEDYRRTEEKAGKRAAYEEMA 303

Query: 59  -----QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
                   G+   ++ S       +      + ++    + G      +  L   +    
Sbjct: 304 AAYYLMQRGVPEIQAYSEFGNRCRVLPYRKLAGILEQNVKNGSKSLTPV--LEAEMEAAF 361

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
             +  +     E  ++  ++      +  +V  T P ++  
Sbjct: 362 EQRKNLARRLGEEASTKLLLPLFMMLLIVMVMITVPAFLAF 402


>gi|257051104|ref|YP_003128937.1| type II secretion system protein [Halorhabdus utahensis DSM 12940]
 gi|256689867|gb|ACV10204.1| type II secretion system protein [Halorhabdus utahensis DSM 12940]
          Length = 568

 Score = 40.5 bits (93), Expect = 0.100,   Method: Composition-based stats.
 Identities = 21/187 (11%), Positives = 63/187 (33%), Gaps = 12/187 (6%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGL 63
           ++        +  +AL +  R V  G  V  A+     Q          +     + L L
Sbjct: 341 VRTYIRDVESNLTDALYLTGRLVDDGKSVETAIQRAGDQVPAATGELLEQAAGLQRRLHL 400

Query: 64  SLSESISRMV---RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           S+ ++          +P   V     ++++ ++ G     A+ +++  L + ++++A+ +
Sbjct: 401 SVHDAFLGEYGVVSDVPSPRVRATVELLAIAAEQGAPAGRAIVSMADHLDELRDVEARTR 460

Query: 121 ALSM--------EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
                        A     ++      ++  +       +      P   + L + A  +
Sbjct: 461 RQLSTITETIDHTATFFGPMVAGATVGLAGGLSGDGTTAIEGATTLPTDQLGLVIGAYVV 520

Query: 173 LIGIMVM 179
            +  +++
Sbjct: 521 SLSFILV 527


>gi|90961402|ref|YP_535318.1| ComG operon protein 2 [Lactobacillus salivarius UCC118]
 gi|90820596|gb|ABD99235.1| ComG operon protein 2 [Lactobacillus salivarius UCC118]
          Length = 357

 Score = 40.5 bits (93), Expect = 0.100,   Method: Composition-based stats.
 Identities = 17/168 (10%), Positives = 60/168 (35%), Gaps = 10/168 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
              I+   + AG  +  ++  I         S   +V +   +G  +S+++         
Sbjct: 34  FFSILSDLLSAGFSLRQSLISI-QNIMPEFYSVSHKVKKNLLMGTKISDALKE------- 85

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    + + ++  G + +++  L  +L  R   + K+++L +      +++  +  
Sbjct: 86  NISKSTYYQLLI-AEQHGEMEKSIKQLGSLLERRVEQQNKLKSLMVYPMILFFMLIIIML 144

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVA-AAFMLIGIMVMRLMINF 185
            +   +  T   +    +          V   + +L+ ++++  ++  
Sbjct: 145 GIKFWLKPTINNFGEDSVKTSSIINWTAVGKYSLILVALIIVLYVLKI 192


>gi|315926213|ref|ZP_07922412.1| type IV pilus assembly protein [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315620473|gb|EFV00455.1| type IV pilus assembly protein [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 362

 Score = 40.5 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 55/163 (33%), Gaps = 7/163 (4%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                  +   + AG+ +  A+  I   + +  ++ +  +V +    G  L++++     
Sbjct: 22  LAIFCGQLGTMLSAGVGILPALRTIAGREHAPHLQDQLHQVAQAIARGHPLADALED--- 78

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
             P    S F   I    +  G L   L NL      + +++  +  + +       +  
Sbjct: 79  --PAIGASPFLINIIRTGEATGELDRVLFNLETFYSRQSDIRNNLFQIFIYPIFVLCLTV 136

Query: 135 SLPFCVSTLVYFTSPGYMNVLIND-PRGHMLLGVAAAFMLIGI 176
           ++   +   V       +  +    P G  LL   +  +  G+
Sbjct: 137 AVTHYLVRTVMPVLLDSLTSMDRSVPPGSRLLITLSRGLSWGL 179



 Score = 37.4 bits (85), Expect = 0.83,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 53/164 (32%), Gaps = 19/164 (11%)

Query: 3   HLIKKRTAKFLDDFPN------------ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS 50
           + +++R  +     P               D +   VR+G+ +  A+ ++     +    
Sbjct: 200 NALRQRLHRLALHLPLIGRLFYLRSMEIFADSLAMMVRSGVALIPALQIVCQNLQNDFLR 259

Query: 51  EF-RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL 109
               R       G+SL+ES+ R      +  +      +    +  G+L++ L+  +   
Sbjct: 260 ARLSRTAALIESGMSLTESLER------IDVLDAEFFQLIQVGESAGSLAQVLSKAAAYY 313

Query: 110 RDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153
                 + K  +  +E      +   +   V + +      Y  
Sbjct: 314 HKTYQKRFKRLSAVLEPAVLVIVGVLVAVVVLSFMSILYAIYTG 357


>gi|303241409|ref|ZP_07327912.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
 gi|302591018|gb|EFL60763.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
          Length = 295

 Score = 40.5 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/154 (11%), Positives = 51/154 (33%), Gaps = 2/154 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           +++++  +   + P  +  + +S++A   V   +      + +  + E    I       
Sbjct: 142 IVRQKREEIEYELPRFVSNLTQSLKATRDVPAILKSYQKSAGEKFKQEIEVTIADMKS-G 200

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           +   +++R+   +    +S     +    +    +      L+   +  +  K K+ A+ 
Sbjct: 201 NEETALTRLESRIGSAMLSDVVRGLISVKRGDNGVI-YFEMLNHDFKQLEIQKLKLLAMK 259

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
              K   +    L   +   +       M  L N
Sbjct: 260 QPGKIKKYSFMMLGCFLLIYLGILGYEIMRALGN 293


>gi|296137197|ref|YP_003644439.1| general secretion pathway protein F [Thiomonas intermedia K12]
 gi|295797319|gb|ADG32109.1| general secretion pathway protein F [Thiomonas intermedia K12]
          Length = 404

 Score = 40.5 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 56/182 (30%), Gaps = 6/182 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +   ++               +   + +GLPV      +   + D  R+E   ++     
Sbjct: 55  RRFARRVFNNQERTL--FTRQLAGLLVSGLPVE---KALAALAEDADRAEIGNLLSNLKS 109

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
            +S   S+         +E       +    +  G+L   +  LS  L D++ ++ K+  
Sbjct: 110 EVSAGHSLGD-ALAQYPREFKPIYRALVSAGEDSGDLGLVMERLSDYLEDQQALRGKLVQ 168

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
                     +  ++   + T V     G             +  +A +  +     + L
Sbjct: 169 AFAYPAIVVLVAVTVVVLLLTYVVPQVVGVFQGAHQKLPLLTVGLIAVSDFMRAWGWLIL 228

Query: 182 MI 183
           ++
Sbjct: 229 IV 230



 Score = 36.6 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/129 (10%), Positives = 33/129 (25%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+  A+       S+ +          + + L    +       +  
Sbjct: 273 FASTLGILGAAGVPILRALQAAADTLSNSLLKA----DAEEAIALVREGATLAQSLALHK 328

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +             +  G L + L   +         +A      +E      + G +  
Sbjct: 329 RFPP-VLITFIRLGEQTGTLPQMLDRAAVQHAQEVQRRAMTLTTILEPLLILVMGGMVLL 387

Query: 139 CVSTLVYFT 147
            V  ++   
Sbjct: 388 IVLAVMMPI 396


>gi|57238493|ref|YP_179624.1| general secretory pathway protein F [Campylobacter jejuni RM1221]
 gi|57167297|gb|AAW36076.1| general secretory pathway protein F [Campylobacter jejuni RM1221]
 gi|315058924|gb|ADT73253.1| MSHA biogenesis protein MshG [Campylobacter jejuni subsp. jejuni
           S3]
          Length = 393

 Score = 40.5 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 56/181 (30%), Gaps = 10/181 (5%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
                ++F      +      GL V +A+  +            +++++   L  +L+++
Sbjct: 50  QRLKDENFILFFKELALLCEVGLSVQEAIREL---YLMHSCKIMKKILDNLILAQNLNQA 106

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                       ++     +   ++  G +SE  + +S++       + +++        
Sbjct: 107 FENA-----NFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPTL 161

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMINFD 186
               I      +   V          L        H++L +       GI  + L + F 
Sbjct: 162 VFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVVFI 221

Query: 187 V 187
           V
Sbjct: 222 V 222


>gi|320102340|ref|YP_004177931.1| type II secretion system F domain-containing protein [Isosphaera
           pallida ATCC 43644]
 gi|319749622|gb|ADV61382.1| Type II secretion system F domain protein [Isosphaera pallida ATCC
           43644]
          Length = 357

 Score = 40.5 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 46/128 (35%), Gaps = 3/128 (2%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   +  GLP   A+ +  G  +    +  +R++E     +   E +S ++R    
Sbjct: 221 FARSLSVLLDGGLPPDQALELTAGTLN---LTGSQRIVEDLRQAVLDGEEMSPVLRIRAE 277

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  G L EALA  +++       + K  +  ++   +  +   + F
Sbjct: 278 DWWGPELADVVENGEETGQLPEALARQAKVDEHDLEQRVKNLSTLVKPLITIALGLLVLF 337

Query: 139 CVSTLVYF 146
            V  +V  
Sbjct: 338 IVLAVVVP 345


>gi|289706182|ref|ZP_06502546.1| type II secretion system F domain protein [Micrococcus luteus SK58]
 gi|289557094|gb|EFD50421.1| type II secretion system F domain protein [Micrococcus luteus SK58]
          Length = 375

 Score = 40.5 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 37/141 (26%), Gaps = 7/141 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            LD++   + AG  +  A+  +               +         + +          
Sbjct: 241 VLDVLAALLSAGRALPAALDDLGRTLPGAPGLRATAALLLWGRDWDEAWAGLD-----TD 295

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                 +  +    + G   +  LA  +  +R +     +  A  +  +    +   L  
Sbjct: 296 PVWIETAARLRPLHRSGMAGARTLAETAAAVRQQTRRADERAAEELAVRLVMPLGLCLLP 355

Query: 139 CVSTLVYFTSPGYMNVLINDP 159
                 +   P  M +L   P
Sbjct: 356 AFVC--WGVVPVVMALLGAGP 374


>gi|302384578|ref|YP_003820400.1| hypothetical protein Closa_0134 [Clostridium saccharolyticum WM1]
 gi|302195206|gb|ADL02777.1| conserved hypothetical protein [Clostridium saccharolyticum WM1]
          Length = 420

 Score = 40.5 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 52/162 (32%), Gaps = 11/162 (6%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI----------VGQSSDPVRSE 51
           K+  + R  + L D+   +  +V  + AGL V  A   I            +S  P   E
Sbjct: 259 KNQARVRERQLLFDYSEVVSKLVVYMGAGLTVRGAWERITAGYKDGVKQGKRSVRPAYEE 318

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILR 110
             +       GLS  ++ S   R   +Q     S ++   Q      L  AL        
Sbjct: 319 MVKTAAQLGSGLSEGKAYSEFGRRCGVQVYIKLSALLEQSQKNGSRQLRPALELEMVSAF 378

Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
           +++   AK        K    ++  L   +  +V      + 
Sbjct: 379 EQRKNLAKKLGEEAGTKLLLPLLMMLGVVMVMIVVPAFLSFY 420


>gi|294341495|emb|CAZ89912.1| Putative General secretion pathway protein F [Thiomonas sp. 3As]
          Length = 404

 Score = 40.5 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 56/182 (30%), Gaps = 6/182 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +   ++               +   + +GLPV      +   + D  R+E   ++     
Sbjct: 55  RRFARRVFNNQERTL--FTRQLAGLLVSGLPVE---KALAALAEDADRAEIGNLLSNLKS 109

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
            +S   S+         +E       +    +  G+L   +  LS  L D++ ++ K+  
Sbjct: 110 EVSAGHSLGD-ALAQYPREFKPIYRALVSAGEDSGDLGLVMERLSDYLEDQQALRGKLVQ 168

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
                     +  ++   + T V     G             L  +A +  +     + L
Sbjct: 169 AFAYPAIVVLVAVTVVVLLLTYVVPQVVGVFQGAHQKLPLLTLGLIAVSDFMRAWGWLIL 228

Query: 182 MI 183
           ++
Sbjct: 229 IV 230



 Score = 36.3 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/129 (10%), Positives = 33/129 (25%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +     AG+P+  A+       S+ +          + + L    +       +  
Sbjct: 273 FASTLGILGAAGVPILRALQAAADTLSNSLLKA----DAEEAIALVREGATLAQSLALHK 328

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +             +  G L + L   +         +A      +E      + G +  
Sbjct: 329 RFPP-VLITFIRLGEQTGTLPQMLDRAAVQHAQEVQRRAMTLTTILEPLLILVMGGMVLL 387

Query: 139 CVSTLVYFT 147
            V  ++   
Sbjct: 388 IVLAVMMPI 396


>gi|289675690|ref|ZP_06496580.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           FF5]
          Length = 184

 Score = 40.5 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 34/76 (44%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    + R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     
Sbjct: 109 VSWRYEVRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQ 168

Query: 61  LGLSLSESISRMVRYM 76
           LG+SL ++        
Sbjct: 169 LGVSLPDAARDFAELY 184


>gi|227828862|ref|YP_002830642.1| type II secretion system protein [Sulfolobus islandicus M.14.25]
 gi|227460658|gb|ACP39344.1| type II secretion system protein [Sulfolobus islandicus M.14.25]
          Length = 658

 Score = 40.5 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 52/177 (29%), Gaps = 3/177 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +      +  P  L  I    + G  +S A+  +        R EF RV++      S+ 
Sbjct: 428 REINDIENSLPQFLRDITEFRKIGYDLSRAIKTLA--GEKKYRREFNRVLDEIVKQDSMG 485

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
             I+R           F  T + +  + G    + L  L+    +    K +  +     
Sbjct: 486 IPITRAKINTRSWLGKFSLTTVQILIEGGAVRPDLLEYLTEFTLNFIQSKREAFSRMRAY 545

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV-LINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           +    +   L      +       +  V L  +  G           ++   ++  M
Sbjct: 546 QVLGILTPILLIVTILIAIVIISSFTVVTLPANTLGIPQFPNIITQFILSSFILAEM 602



 Score = 35.1 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 58/175 (33%), Gaps = 5/175 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60
           K   ++      D+ P  + +I     +G  + + +  IV       ++ E   +I    
Sbjct: 193 KSRAREVRDSIQDEIPFFVTLITIINASGTTIYEGMRKIVQFPLFKAMKKEALLIIRDID 252

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
               S  +++    R    ++ S+F    +   + GG++   L   +R   +    + + 
Sbjct: 253 FFGKSPLDALEHRARLTFNRDYSWFLAGYTSIIRSGGDIEAYLFQKAREFLNWLQFRWRF 312

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
            +          +I  L F +  +V      + N  +      + +       +I
Sbjct: 313 YSERTSFLGELIVILFLIFPMFLIVLAF---FTNGAVISFLLVIPILFGTILYII 364


>gi|326204947|ref|ZP_08194799.1| Type II secretion system F domain [Clostridium papyrosolvens DSM
           2782]
 gi|325984876|gb|EGD45720.1| Type II secretion system F domain [Clostridium papyrosolvens DSM
           2782]
          Length = 405

 Score = 40.5 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/136 (11%), Positives = 42/136 (30%), Gaps = 5/136 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   +++G+ +  A+ V+ G  ++ + S     ++      S+    +       +
Sbjct: 273 FTRTLSTLLKSGVSLIHALEVVDGVVNNQIVSRGLIKVKE-----SIKMGSNLAAPLEKM 327

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                  T +    +  G+L   +  ++    +            ME      +   + F
Sbjct: 328 GIFPLMVTHMISVGEEAGSLDSIMEKVADFYDEEVETSVSKLVAMMEPLLMMVLAIIVGF 387

Query: 139 CVSTLVYFTSPGYMNV 154
            V  ++      Y  V
Sbjct: 388 IVVAMILPIFSMYQGV 403


>gi|119716452|ref|YP_923417.1| type II secretion system protein [Nocardioides sp. JS614]
 gi|119537113|gb|ABL81730.1| type II secretion system protein [Nocardioides sp. JS614]
          Length = 303

 Score = 40.5 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 46/142 (32%), Gaps = 2/142 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGL 63
            KK   +F       +D++   VR G     A+          V       +   +++  
Sbjct: 154 AKKARIEFSRALGAYIDMVATGVRDGSSGQQALRSAAEVGDKWVFKRIESELRRARYMTR 213

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           +  +S+  +   + + E+   + ++    Q G  +   L   +  L     + A+V   +
Sbjct: 214 APWDSLHGLADELAVPELDDLADIMQQSGQDGAQIYNNLRARAAAL-RSAMLSAEVGKAN 272

Query: 124 MEAKASAWIIGSLPFCVSTLVY 145
             ++        L      ++ 
Sbjct: 273 ATSERMYIPASLLGIVFMAILV 294


>gi|261402229|ref|YP_003246453.1| Type II secretion system F domain protein [Methanocaldococcus
           vulcanius M7]
 gi|261369222|gb|ACX71971.1| Type II secretion system F domain protein [Methanocaldococcus
           vulcanius M7]
          Length = 559

 Score = 40.5 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 57/160 (35%), Gaps = 2/160 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRA-GLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           +    ++R  +    FP  L  +  SV A G  +  ++  +      P+ ++ +R+ +  
Sbjct: 317 ISLREEERVKRKEFVFPEFLRSLGDSVSAKGGGMVSSLEYLSNHDFGPLTNDIKRLYKRL 376

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            LG+  ++S            +  FS + S     GG+   A   +S+  R    ++ K 
Sbjct: 377 ALGIDSNKSWRFFGFDSCSYLIQLFSDIFSRCIYFGGDPKTAAEIISKNFRKIVQLR-KS 435

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159
           +  +++              ++          +N L +  
Sbjct: 436 KYQNIQQFVGVVYGLGGGLSLALFASLGVAKMINDLYSSL 475


>gi|292655372|ref|YP_003535269.1| flagella biogenesis protein FlaJ [Haloferax volcanii DS2]
 gi|291370948|gb|ADE03175.1| flagella biogenesis protein FlaJ (probable flagellin secretion
           system protein FlaJ) [Haloferax volcanii DS2]
          Length = 580

 Score = 40.5 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/183 (9%), Positives = 58/183 (31%), Gaps = 3/183 (1%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIET-Q 59
           + L+++      +     +  +       +        +  +     + +E  R+++   
Sbjct: 83  RLLVEQTRRSLENQLHLLITHMTVLSTTNIDRVAVFRTLAREEEYGELATEMNRIVQLVD 142

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
               SL ++  R  R +P + ++ F   ++     G ++ + L      +  +     + 
Sbjct: 143 AWNQSLDDACQRRAREVPSKPLADFLDRLAYSINAGQSIDDFLLGEQNAMIQKYITVYES 202

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
              ++E     ++   L    + +     P           G +++      +     V+
Sbjct: 203 ALGNLEVMKDLYLSMILSMTFAIINAIVLPILTGTDATMTIGAVIVLFVFVQLGF-YFVI 261

Query: 180 RLM 182
           R M
Sbjct: 262 RTM 264


>gi|296123622|ref|YP_003631400.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
 gi|296015962|gb|ADG69201.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
          Length = 362

 Score = 40.5 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 41/124 (33%), Gaps = 5/124 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   +RAG+P+      +   SS  +     R+ E    G +L  +I+           +
Sbjct: 21  LALLIRAGIPLEIGFQQLGRGSSSDLARLAERIGERLQQGQALDLAIASENTPE-----A 75

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
                I       G L E L +++ +      ++ +   +++       +   L   ++ 
Sbjct: 76  RLYATIVQLGIRSGRLPEMLESMAHLGDQMSAVREEFHRVAIYPTIVVVLTYLLICGLAI 135

Query: 143 LVYF 146
               
Sbjct: 136 WFIP 139


>gi|16081952|ref|NP_394362.1| hypothetical protein Ta0903 [Thermoplasma acidophilum DSM 1728]
 gi|10640180|emb|CAC12032.1| hypothetical membrane protein [Thermoplasma acidophilum]
          Length = 238

 Score = 40.5 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/163 (11%), Positives = 51/163 (31%), Gaps = 9/163 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
             P+ +  +      GL +   + +I  +   P++ E  + +     G ++ E    + +
Sbjct: 48  QVPSLVRDLSGYSSYGLSLYSVLRMIKNEDLGPIKEEVDKAMAMMKNGNTIEEVSQYLQK 107

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                      + +   +   G   E L  LS  + +R      V        +  ++  
Sbjct: 108 NSSPD--LALVSAVLKNADNTGRAGETLQFLSTYMNERSTNHKNVTQ-----TSENYVGL 160

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
            +   +  ++      +    +      M+L  +   M+   +
Sbjct: 161 VIGSFLIFVLVMVVVDFY--FLKSNGHAMVLLSSVIMMVQSYV 201


>gi|300214267|gb|ADJ78683.1| ComG operon protein 2 [Lactobacillus salivarius CECT 5713]
          Length = 333

 Score = 40.5 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/168 (10%), Positives = 60/168 (35%), Gaps = 10/168 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
              I+   + AG  +  ++  I         S   +V +   +G  +S+++         
Sbjct: 10  FFSILSDLLSAGFSLRQSLISI-QNIMPEFYSVSHKVKKNLLMGTKISDALKE------- 61

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    + + ++  G + +++  L  +L  R   + K+++L +      +++  +  
Sbjct: 62  NISKSTYYQLLI-AEQHGEMEKSIKQLGSLLERRVEQQNKLKSLMVYPMILFFMLIIIML 120

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVA-AAFMLIGIMVMRLMINF 185
            +   +  T   +    +          V   + +L+ ++++  ++  
Sbjct: 121 GIKFWLKPTINNFGEDSVKTSSIINWTAVGKYSLILVALIIVLYVLKI 168


>gi|224418844|ref|ZP_03656850.1| transcription regulator AsnC [Helicobacter canadensis MIT 98-5491]
 gi|253828167|ref|ZP_04871052.1| secretion system protein [Helicobacter canadensis MIT 98-5491]
 gi|313142362|ref|ZP_07804555.1| predicted protein [Helicobacter canadensis MIT 98-5491]
 gi|253511573|gb|EES90232.1| secretion system protein [Helicobacter canadensis MIT 98-5491]
 gi|313131393|gb|EFR49010.1| predicted protein [Helicobacter canadensis MIT 98-5491]
          Length = 398

 Score = 40.5 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/181 (11%), Positives = 53/181 (29%), Gaps = 18/181 (9%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            +  NA   +   ++A LP+ D +  I   + +         +               + 
Sbjct: 59  KEISNAFYQLKFGLKANLPLKDLLESIQKYAKNNYLKMQFLKVSNSLHQG------KELA 112

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S F   +    Q  G L E++  +   L++R+     ++ +         ++
Sbjct: 113 DCFKDAGFSDFICAMIGIGQKSGRLVESVEFILLDLQNRQKNHKLLRKILFYPLFMVCVM 172

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR-------GHMLLG-----VAAAFMLIGIMVMRL 181
             +   ++  V          L               +L      +     ++G+ ++R 
Sbjct: 173 VLVFLGITLFVLPQFESLFASLDTSLPLASQSLLFMRVLVLNYGILIVGASILGLWLLRK 232

Query: 182 M 182
           +
Sbjct: 233 L 233


>gi|296394989|ref|YP_003659873.1| type II secretion system F domain-containing protein [Segniliparus
           rotundus DSM 44985]
 gi|296182136|gb|ADG99042.1| Type II secretion system F domain protein [Segniliparus rotundus
           DSM 44985]
          Length = 192

 Score = 40.5 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 9/158 (5%)

Query: 5   IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             +RTA+        + D++  S+RAGLP S A+  +   + +P+     +      LG 
Sbjct: 38  ASRRTARLDQLGLAASYDLLAVSLRAGLPTSVAMRAVAQSAPEPLAGALAKAASLLALGA 97

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA-- 121
               +          +  +  + +    ++ G  L+E L  L+   R     +A  +A  
Sbjct: 98  GPRTAWEEAAAL---EVTAPLARMAIRSARSGTALAEGLGELASGARAEALDQAAAEASR 154

Query: 122 ---LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
              L        ++       V  ++     G M    
Sbjct: 155 AAVLLAGPLGLCFLPAFFCLGVMPVIVGLGSGVMRDAW 192


>gi|213966025|ref|ZP_03394214.1| bacterial type II secretion system protein F domain protein
           [Corynebacterium amycolatum SK46]
 gi|213951320|gb|EEB62713.1| bacterial type II secretion system protein F domain protein
           [Corynebacterium amycolatum SK46]
          Length = 290

 Score = 40.5 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 65/185 (35%), Gaps = 4/185 (2%)

Query: 1   MKHLIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           ++ + ++R  +   D    AL+ +   +RAG   S   A+    +      +   + +  
Sbjct: 103 VRAVGERRCERREADSAAVALETLTAQLRAGAAASR--ALNAAAAEVRRAEDMTVLADHL 160

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                 +            +++     + +V  Q G +L+  L      L+ R+  +++ 
Sbjct: 161 AHAAHRANFADPWETEESSEQLRRIGRMWTVAQQHGLSLAGLLDCARGDLQARQAHRSQT 220

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            A     + +  I+ SLP     +           L +   G ++L +    +  GI   
Sbjct: 221 SAALAGPRMTIAILASLPVFGLIMGQAFGASPFEFL-SRGIGGIVLVIGVGLVCAGIEWA 279

Query: 180 RLMIN 184
             +I+
Sbjct: 280 VAIID 284


>gi|12247886|gb|AAG50079.1|AF333250_12 FlaJ [Methanothermococcus thermolithotrophicus]
          Length = 559

 Score = 40.5 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 57/164 (34%), Gaps = 2/164 (1%)

Query: 13  LDDFPNALDIIVRSVRA-GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
             +FP+ L  +  SV A G  +++++  +      P+  +  R+ +   + +  +++   
Sbjct: 329 EYNFPDFLRSLGNSVSAKGGGMTESLKYLSSHDFGPLTKDLERLYKRISIRIDNNKAWRY 388

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                    +  FS +    + LGG+  +A   +    R   N++ K +  S+   +   
Sbjct: 389 FGFDTCSYLIQLFSEMFERCTFLGGDPGKASEIIGTNFRKIINLR-KSKYQSVAQFSGII 447

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
                   +S    +     ++ L         +      M  G
Sbjct: 448 YGLGGGMALSLYASYGVAQMVSNLYTTLDIPEAMISVINIMSPG 491


>gi|294635024|ref|ZP_06713541.1| protein transport protein HofC [Edwardsiella tarda ATCC 23685]
 gi|291091623|gb|EFE24184.1| protein transport protein HofC [Edwardsiella tarda ATCC 23685]
          Length = 399

 Score = 40.5 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 54/160 (33%), Gaps = 8/160 (5%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
           + +  +   + AGL ++  +A++ G       ++  R++ +    GLS S+++       
Sbjct: 62  DFIAQLAELLDAGLALAPVLALMAGGHPYPEWQALIRQLHQAITTGLSFSQALHEHGTIF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
           P               +  G L+     L+R  RD  +++ ++            +  S+
Sbjct: 122 PPLYARTLVAA-----EQSGELAAVCRQLARQQRDALDLRQRLLRALRYPLFLLTVALSI 176

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHM--LLGVAAAFMLI 174
              +   +          L          LL +AA    I
Sbjct: 177 TLAMLFTLLPQFALLYASLDAPLPWLTQRLLALAAGLRSI 216


>gi|325577721|ref|ZP_08147996.1| type IV pilus assembly protein PilC [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160466|gb|EGC72592.1| type IV pilus assembly protein PilC [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 407

 Score = 40.5 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 59/162 (36%), Gaps = 9/162 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
             +    L+ +   + + +P+ +A+ ++    +   +      +IE    G+S S+S+  
Sbjct: 57  NAEISALLNQLATLLSSAIPLKNALHILQDNCTQLGLHQWLGALIELIESGISFSQSLEI 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +Y+  QE       +    ++ G L+E    ++        ++ K+Q + +       
Sbjct: 117 QGKYLNFQE-----IQLIQVGEMTGKLAEVCTKIAERRTQSLTLQRKLQKIMLYPA---M 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           ++G        L+ F  P +  +   +      L      M 
Sbjct: 169 VLGISLSLTLILLLFVVPQFAEMYGENSAELPTLTAVLLAMS 210


>gi|301154754|emb|CBW14217.1| unnamed protein product [Haemophilus parainfluenzae T3T1]
          Length = 407

 Score = 40.5 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 58/162 (35%), Gaps = 9/162 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
             +    L+ +   + + +P+ +A+ ++    +   +      +IE    GL  S+S+  
Sbjct: 57  NAEISALLNQLATLLSSAIPLKNALHILQDNCTQLGLHQWLGALIELIESGLPFSQSLEI 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +Y+  QE       +    ++ G L+E    ++        ++ K+Q + +       
Sbjct: 117 QGKYLNFQE-----IQLIQVGEMTGKLAEVCTKIAERRTQSLTLQRKLQKIMLYPA---M 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           ++G        L+ F  P +  +   +      L      M 
Sbjct: 169 VLGISLSLTLILLLFVVPQFAEMYGENSAELPTLTAVLLAMS 210


>gi|16331160|ref|NP_441888.1| pilin biogenesis protein [Synechocystis sp. PCC 6803]
 gi|1653654|dbj|BAA18566.1| pilin biogenesis protein [Synechocystis sp. PCC 6803]
          Length = 298

 Score = 40.1 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/134 (9%), Positives = 40/134 (29%), Gaps = 7/134 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
              +     R+G+P+  ++ ++     +  +       I     G  +S ++ +      
Sbjct: 167 FCRVFGTLTRSGVPIIQSLEIVCNTVPNKVISDAIAGAISEIQQGGMMSLALQQ------ 220

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +     +  +    +  G L   +  ++    D      K     +E      I G + 
Sbjct: 221 SKVFPSLAIQMISIGEETGELDAMMMKVADFYEDEVEQTVKALTSIIEPAMMVLIAGMVG 280

Query: 138 FCVSTLVYFTSPGY 151
             + ++       +
Sbjct: 281 TILLSMYLPMFAIF 294


>gi|121612272|ref|YP_001001119.1| general secretory pathway protein F [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167006012|ref|ZP_02271770.1| general secretory pathway protein F [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|32765531|gb|AAP87275.1| CtsF [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87249843|gb|EAQ72802.1| general secretory pathway protein F [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 392

 Score = 40.1 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 56/181 (30%), Gaps = 10/181 (5%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
                ++F      +      GL V +A+  +            +++++   L  +L+++
Sbjct: 50  QRLKDENFILFFKELALLCEVGLSVQEAIREL---YFMHSCKIMKKILDNLILAQNLNQA 106

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                       ++     +   ++  G +SE  + +S++       + +++        
Sbjct: 107 FENA-----NFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPTL 161

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMINFD 186
               I      +   V          L        H++L +       GI  + L + F 
Sbjct: 162 VFLSIIGAFLFLMLFVVPNFKDLFENLGVSLPFITHVMLEIYNFLDDYGIFCIFLFVIFI 221

Query: 187 V 187
           V
Sbjct: 222 V 222


>gi|307244466|ref|ZP_07526575.1| type II secretion system F domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492159|gb|EFM64203.1| type II secretion system F domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 351

 Score = 40.1 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 49/160 (30%), Gaps = 8/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           MK L++K+      +       I    ++G  +      I+  SS  V      V     
Sbjct: 1   MKILLQKKIR--DKELKLICQQIASMEKSGCDLMTIFDTIINTSSKKVSGVMAMVKRNIE 58

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +++E+             S F   +    ++ GN+      ++        +K K+ 
Sbjct: 59  RGRTMTEAFYL------TNAFSVFFISMIRAGEVSGNIDFVFEKMTAYYDREYRLKNKLI 112

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
           A ++      ++       +   V         V ++   
Sbjct: 113 AAAIYPMILVFVTLLCLVFMLVFVVPNFESAFAVDMDQLP 152



 Score = 34.3 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 9/131 (6%), Positives = 38/131 (29%), Gaps = 5/131 (3%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           N    +   + +G+ + +++ +      +       +++               +    P
Sbjct: 218 NFSRAMAILLGSGIHIGESIDITTRLLDNSYIERKMKMVGDHIKKGKSVTRSLELSGIFP 277

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     + +  +  GN  ++L   S       +++ +     +E      +   + 
Sbjct: 278 Q-----VFISMLMSGEESGNFDKSLEMASSYYEKELDLELENLVKIVEPALILLMGLIIG 332

Query: 138 FCVSTLVYFTS 148
            C+  ++    
Sbjct: 333 GCLYAILSPMF 343


>gi|323486497|ref|ZP_08091820.1| hypothetical protein HMPREF9474_03571 [Clostridium symbiosum
           WAL-14163]
 gi|323400200|gb|EGA92575.1| hypothetical protein HMPREF9474_03571 [Clostridium symbiosum
           WAL-14163]
          Length = 404

 Score = 40.1 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 51/161 (31%), Gaps = 10/161 (6%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET--- 58
           +   KKR  + + D+   L  +V  + AGLPV  A A IV           +R       
Sbjct: 244 QEAKKKRECQMMMDYSEILSRLVVFLGAGLPVRKAWAKIVKDYRRTEEKAGKRAAYEEMA 303

Query: 59  -----QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
                   G+   ++ S       +      + ++    + G      +  L   +    
Sbjct: 304 AAYYLMQRGVPEIQAYSEFGNRCRVLPYRKLAGILEQNVKNGSKSLTPV--LEAEMEAAF 361

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
             +  +     E  ++  ++      +  +V  T P ++  
Sbjct: 362 EQRKNLARRLGEEASTKLLLPLFMMLLIVMVMITVPAFLAF 402


>gi|271502027|ref|YP_003335053.1| Type II secretion system F domain-containing protein [Dickeya
           dadantii Ech586]
 gi|270345582|gb|ACZ78347.1| Type II secretion system F domain protein [Dickeya dadantii Ech586]
          Length = 401

 Score = 40.1 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 49/157 (31%), Gaps = 6/157 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73
                +  +   ++AGLP+ DA+ ++  Q      R   + +      G  LSE +S   
Sbjct: 60  QLSIIVRQLSTLLQAGLPLLDALELLGRQHEKAGWRCLLQDIRLQVSQGRPLSEVLSEYP 119

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
              P+         +    +L G L E  A L+     ++ +   V            + 
Sbjct: 120 TIFPV-----MCRSLVAVGELTGKLDECCARLADYQEMQRQLTGTVIKALRYPIFVVAVG 174

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             +   + TLV                    + +A +
Sbjct: 175 LLVTLLMLTLVLPEFAELYASFGAPLPWLTRMMLALS 211


>gi|222478656|ref|YP_002564893.1| type II secretion system protein [Halorubrum lacusprofundi ATCC
           49239]
 gi|222451558|gb|ACM55823.1| type II secretion system protein [Halorubrum lacusprofundi ATCC
           49239]
          Length = 664

 Score = 40.1 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 58/188 (30%), Gaps = 14/188 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGL-PVSDAVA-VIVGQSSDPVRSEFRRVIET 58
           ++ L   R        P A+  +   + AG       V       +     +  R+ +  
Sbjct: 149 LRWLTATRRTDIERTLPPAVRYL-ELLAAGSDGPRKMVEKAAANDAYGGTATSLRKALNA 207

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFS------TVISVQSQLGGNLSEALANLSRILRDR 112
             L  SL E + R+ R  P +E+             +  + L   L      L+      
Sbjct: 208 ARLAGSLDEGLRRVARDTPSRELLAPFLLKFRKHAATGDAALAEYLRTESRMLAHRQDRA 267

Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG----HMLLGVA 168
           +    +   L  E      ++ +L    +T +    P  +  + + P G      ++   
Sbjct: 268 RKRARRFLELLTELFVVVLVLPALLVIAATALTVVVPELLPPV-DTPVGVVPTRAVVLYG 326

Query: 169 AAFMLIGI 176
           A   L+ I
Sbjct: 327 AVVFLVAI 334


>gi|220913900|ref|YP_002489209.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
 gi|219860778|gb|ACL41120.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
          Length = 200

 Score = 40.1 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 40/128 (31%), Gaps = 2/128 (1%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L+++   + AG  +  A+ ++   +S       R V+    +G     +       +  
Sbjct: 64  MLELVAAMLDAGSSIGRALELVSMSASARYSESLRPVVSALAIGADWETAWRSSA--VRQ 121

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
             +      +   +  G   S  L   +  LR  +   A+ +A S+  K    +      
Sbjct: 122 PGILELRDALGFAALTGAPSSAILYAQAARLRRERFRAAEKRAASLGVKLVIPLGLCSLP 181

Query: 139 CVSTLVYF 146
               L   
Sbjct: 182 AFICLGVV 189


>gi|159041008|ref|YP_001540260.1| type II secretion system protein [Caldivirga maquilingensis IC-167]
 gi|157919843|gb|ABW01270.1| type II secretion system protein [Caldivirga maquilingensis IC-167]
          Length = 271

 Score = 40.1 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 73/180 (40%), Gaps = 1/180 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLG 62
           +++ R  KF       L  ++  + +G P+ +    +   +    V  EFRR++   + G
Sbjct: 87  MLRSRARKFEKSMTTILLTMIPLMASGEPLVNVFNYLALIKIEPEVNEEFRRLVSEAYSG 146

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             +  +I R +  +P +  +   +++     + G++++ LA     +  R+    K +  
Sbjct: 147 FDIVSAIKRSIERVPSRVYNDVMSILVESYGVSGSIADVLALKLDSIIRREQSTFKSRTQ 206

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           ++      +++ +    +  ++   S   +  +  +P   +LL        IG +   +M
Sbjct: 207 ALSLMMEVYVVSAQLLPILLIILTISLAPLGSVPINPEALILLMFLIYVPAIGSVFYIIM 266


>gi|77454610|ref|YP_345478.1| hypothetical protein pREL1_0043 [Rhodococcus erythropolis PR4]
 gi|77019610|dbj|BAE45986.1| conserved hypothetical membrane protein [Rhodococcus erythropolis
           PR4]
          Length = 299

 Score = 40.1 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 54/139 (38%), Gaps = 1/139 (0%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESI 69
           +F     + +D++    R G+  + ++ +        V       + E    G +   ++
Sbjct: 156 EFAQALSSYIDLVALCRRGGIGSTQSLEIAAQVGDSWVFLRLDEELYEAGRSGEAPWSAL 215

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
           +R+ + + L E+   + ++++    G ++  +L   +  LR  +    +  A+    K +
Sbjct: 216 TRVSQQLGLAELGDLADIMTMTGDKGASVYTSLRAKAASLRSAQTSAEQSAAVEATEKLA 275

Query: 130 AWIIGSLPFCVSTLVYFTS 148
             + G     ++ L+    
Sbjct: 276 MPLAGLAGLFMALLLIPAV 294


>gi|238927928|ref|ZP_04659688.1| general secretion pathway protein F [Selenomonas flueggei ATCC
           43531]
 gi|238884261|gb|EEQ47899.1| general secretion pathway protein F [Selenomonas flueggei ATCC
           43531]
          Length = 402

 Score = 40.1 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/155 (11%), Positives = 41/155 (26%), Gaps = 4/155 (2%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L  +   +  G+PV  A+  ++            R +    +              M  
Sbjct: 68  FLQELSVLLAVGIPVHCALERLLAGEHGTSMGRVIRTLHRAVMHG----MSLSQAMSMQR 123

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           Q  S     +    +  G L   L   +  L +    +  V++  +           +  
Sbjct: 124 QVFSSVLVGMVRAGEESGALDVVLRAAASFLTEVHRTREAVRSALLYPCFLLAATLLVLA 183

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
            ++  V       +  L         L +A +  +
Sbjct: 184 LMTVFVLPIFAVLLADLHTALPLPTRLLLAVSAQM 218


>gi|238621054|ref|YP_002915880.1| type II secretion system protein [Sulfolobus islandicus M.16.4]
 gi|238382124|gb|ACR43212.1| type II secretion system protein [Sulfolobus islandicus M.16.4]
          Length = 658

 Score = 40.1 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 52/177 (29%), Gaps = 3/177 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +      +  P  L  I    + G  +S A+  +        R EF RV++      S+ 
Sbjct: 428 REINDIENSLPQFLRDITEFRKIGYDLSRAIKTLA--GEKKYRREFNRVLDEIVKQDSMG 485

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
             I+R           F  T + +  + G    + L  L+    +    K +  +     
Sbjct: 486 IPITRAKINTRSWLGKFSLTTVQILIEGGAVRPDLLEYLTEFTLNFIQSKREAFSRMRAY 545

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV-LINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           +    +   L      +       +  V L  +  G           ++   ++  M
Sbjct: 546 QVLGILTPILLIATILIAIVIISSFTVVTLPANTLGIPQFPNIITQFILSSFILAEM 602



 Score = 35.1 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 58/175 (33%), Gaps = 5/175 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60
           K   ++      D+ P  + +I     +G  + + +  IV       ++ E   +I    
Sbjct: 193 KSRAREVRDSIQDEIPFFVTLITIINASGTTIYEGMRKIVQFPLFKAMKKEALLIIRDID 252

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
               S  +++    R    ++ S+F    +   + GG++   L   +R   +    + + 
Sbjct: 253 FFGKSPLDALEHRARLTFNRDYSWFLAGYTSIIRSGGDIEAYLFQKAREFLNWLQFRWRF 312

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
            +          +I  L F +  +V      + N  +      + +       +I
Sbjct: 313 YSERTSFLGELIVILFLIFPMFLIVLAF---FTNGAVISFLLVIPILFGTILYII 364


>gi|210629926|ref|ZP_03296173.1| hypothetical protein COLSTE_00056 [Collinsella stercoris DSM 13279]
 gi|210160743|gb|EEA91714.1| hypothetical protein COLSTE_00056 [Collinsella stercoris DSM 13279]
          Length = 218

 Score = 40.1 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 1/126 (0%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS-LSESISRMV 73
           +    +DI+   + AGL    A+ +     S P+     R   +   GLS   + +  + 
Sbjct: 77  EVSEMVDIVRLGLSAGLSFDAALELYCDGRSGPLAVRLARAHVSWQSGLSTREDELRLVA 136

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R   ++ +  F+  +S   +LG  L+E L    R +R     + + +      K      
Sbjct: 137 RETGVRALETFAIAVSQALELGAPLAETLEGQGREMRAAHRAEVERRIERAPVKLIIPTG 196

Query: 134 GSLPFC 139
             +   
Sbjct: 197 TLILPA 202


>gi|283797137|ref|ZP_06346290.1| hypothetical protein CLOM621_07103 [Clostridium sp. M62/1]
 gi|291075553|gb|EFE12917.1| hypothetical protein CLOM621_07103 [Clostridium sp. M62/1]
          Length = 463

 Score = 40.1 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 46/134 (34%), Gaps = 12/134 (8%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV----------RSE 51
           +   KKR  + L D+ + +  +   + AGLPV  A   +  +  + +            E
Sbjct: 301 REEQKKRNRELLFDYSDIVSGLCVYLNAGLPVRKAWERLAEEYREGLELPGSRRRAGYEE 360

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111
               +   + G+   ++     R   L+     + +++   + G      L +L   +  
Sbjct: 361 IAASVSAMNQGMPELKAYGEFGRSCGLRSYRKLAGLMTQYVKNGSG--SLLKSLEEEMES 418

Query: 112 RKNMKAKVQALSME 125
               + +    + E
Sbjct: 419 AFEERKEAARRAGE 432


>gi|266621095|ref|ZP_06114030.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
 gi|288867251|gb|EFC99549.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
          Length = 411

 Score = 39.7 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/163 (11%), Positives = 50/163 (30%), Gaps = 12/163 (7%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR----------SE 51
           +++ K+R    L D+   +   +  + AG+ +  A   I       V+           E
Sbjct: 250 QNVKKQREQLLLLDYSEIVSKFMVFISAGMTIRTAWERIAAGYEKTVQTGNRKARPAYEE 309

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111
               I     G++   +     R   LQ     + ++    + G    ++   L   +  
Sbjct: 310 MCHTISQLKSGMAEGRAYGEFGRRCGLQPYVKLAALLEQNRKTGSKNLKSALEL--EMVS 367

Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
               +  +     E   +  ++         ++    P ++ +
Sbjct: 368 AFEQRKNLAKKLGEEAGTKLLLPLFLMLGVVMIMIVVPAFLAI 410


>gi|283779989|ref|YP_003370744.1| type II secretion system protein [Pirellula staleyi DSM 6068]
 gi|283438442|gb|ADB16884.1| type II secretion system protein [Pirellula staleyi DSM 6068]
          Length = 342

 Score = 39.7 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/166 (9%), Positives = 41/166 (24%), Gaps = 12/166 (7%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                     +  + ++G+ +     +   Q     ++    ++     G  L+ ++   
Sbjct: 6   TRRLVELCHRVATATKSGVDIRRIWEIESRQGPAAQQAAASEILRRISGGDPLAVAMR-- 63

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 +        ++   +  G L E L  L         M+               I
Sbjct: 64  ----DTRFFPPLVVEMTDVGERTGKLDEVLFRLGEHYDHGLKMRQTFLIGIAWPVLELAI 119

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
              +   V  +    +            G  +LG+        ++ 
Sbjct: 120 SVLVIGGVIYITGVINDQP------GAPGVDILGLGLTGASGALIW 159


>gi|147920584|ref|YP_685619.1| hypothetical protein RCIX950 [uncultured methanogenic archaeon
           RC-I]
 gi|110621015|emb|CAJ36293.1| conserved hypothetical protein [uncultured methanogenic archaeon
           RC-I]
          Length = 630

 Score = 39.7 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/165 (11%), Positives = 50/165 (30%), Gaps = 7/165 (4%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-------RSEFRRV 55
            LI+ R      +F ++L ++ R +  G    +A A      +           +   R 
Sbjct: 375 KLIRDRIVAMEGEFADSLFVLGRRISEGRSPEEAFAYTARIVTGTTIGKAYARAAYNIRC 434

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           + T      L             +  +  + ++      G     ++  L+  L++ + +
Sbjct: 435 LRTTLSEAVLDPDYGAFSDVYSDRIRATINMLVETSGMSGEVAGTSVIVLADHLKELQAI 494

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
           + +V+ +     +               V     G +  +I +  
Sbjct: 495 EQEVRKMLFTMTSMLRTTCIAFAPFIGGVTLALSGAVTAVIAETA 539


>gi|83589193|ref|YP_429202.1| hypothetical protein Moth_0325 [Moorella thermoacetica ATCC 39073]
 gi|83572107|gb|ABC18659.1| hypothetical protein Moth_0325 [Moorella thermoacetica ATCC 39073]
          Length = 261

 Score = 39.7 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/184 (10%), Positives = 56/184 (30%), Gaps = 8/184 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV--IET 58
           MK    +R  +      + +        A L   + +  +  +   P+  E   +     
Sbjct: 74  MKMRENRRKERLRQVAKDIIVAAGGMFSANLMTGEVIKTLAERIPAPLGRELADIKARRE 133

Query: 59  QHLGLSLSESISRMVRYMPLQEVS--FFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
            +   +  + ++ +     L E+         + ++      ++ L  L   LR R  + 
Sbjct: 134 LNSYNTYPQLLNGLAEKYDLMEIKAMAAVLAAAERAGGPAAAAKGLKRLGAALRLRDRLI 193

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            + +  + E    + +   +   +                      +L+  +A    +G+
Sbjct: 194 QERKVATYE----SRLAAVVVIMILAAGLLFDATAWREAYTGSGKLILVAASALITGMGL 249

Query: 177 MVMR 180
            V++
Sbjct: 250 FVVK 253


>gi|330815109|ref|YP_004358814.1| type II secretion system protein F [Burkholderia gladioli BSR3]
 gi|327367502|gb|AEA58858.1| type II secretion system protein F [Burkholderia gladioli BSR3]
          Length = 395

 Score = 39.7 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/139 (11%), Positives = 42/139 (30%), Gaps = 6/139 (4%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                  ++  ++AGL + + +  ++  +    +R    R++     G   S  +     
Sbjct: 59  LVLFSQELLALLKAGLSIVEGLEALLEREGGARLRGVLERILAGLREGKRFSSLLGEQPD 118

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
             P          I   ++   +L  AL            ++ K+ + ++       + G
Sbjct: 119 VFPP-----LYVGIVRAAEGTSDLPRALQRYVDYQERIDTVRNKLVSSAIYPSILLVVGG 173

Query: 135 SLPFCVSTLVYFTSPGYMN 153
            +   + T V         
Sbjct: 174 GVSTFLITYVVPRFATIYE 192


>gi|238760626|ref|ZP_04621754.1| hypothetical protein yaldo0001_40360 [Yersinia aldovae ATCC 35236]
 gi|238701159|gb|EEP93748.1| hypothetical protein yaldo0001_40360 [Yersinia aldovae ATCC 35236]
          Length = 294

 Score = 39.7 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 56/161 (34%), Gaps = 9/161 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
           +D       +   V A LP+ +A+  +  QS     R+   +V      GL L+++++  
Sbjct: 66  NDLVLLTRQLSTLVAAALPLEEALLALAQQSEKPRHRALLEQVRNKILEGLPLADALASF 125

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +       S     +    +  G+L + L  L+      + +K+K+    +       +
Sbjct: 126 PKT-----FSSLFRTMVAAGEASGHLDKVLLRLADNAEQSQKLKSKMLQALIYPL---VL 177

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
                  V+ L+    P  +   I+  +   L       + 
Sbjct: 178 TVVAISVVAILLTAVVPKVIEQFIHMQQALPLSTRLLISLS 218


>gi|256851415|ref|ZP_05556804.1| competence protein [Lactobacillus jensenii 27-2-CHN]
 gi|260660836|ref|ZP_05861751.1| competence protein [Lactobacillus jensenii 115-3-CHN]
 gi|282933135|ref|ZP_06338522.1| competence protein [Lactobacillus jensenii 208-1]
 gi|297206229|ref|ZP_06923624.1| competence protein [Lactobacillus jensenii JV-V16]
 gi|256616477|gb|EEU21665.1| competence protein [Lactobacillus jensenii 27-2-CHN]
 gi|260548558|gb|EEX24533.1| competence protein [Lactobacillus jensenii 115-3-CHN]
 gi|281302639|gb|EFA94854.1| competence protein [Lactobacillus jensenii 208-1]
 gi|297149355|gb|EFH29653.1| competence protein [Lactobacillus jensenii JV-V16]
          Length = 333

 Score = 39.7 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 54/165 (32%), Gaps = 17/165 (10%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            +     L+ +  S++ GL +++++ V        + + + +          L E     
Sbjct: 16  REQL-EFLEYLAMSLKNGLSLAESLQV--------MPALWSKKQRLLRKLTYLMEQGVNF 66

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            + +               + + GNL+E L  L  I R ++    K++A           
Sbjct: 67  SQILRQMGFGKTIASQVDLAMMQGNLNECLNQLVIINRLKEEQLKKLKAELSYP------ 120

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
                F +   +      ++N  +    G   L  A   ++  ++
Sbjct: 121 --ITLFVLMIFMLLFMQNFLNGQLGQEDGTANLVFAILIVVASVL 163


>gi|227891631|ref|ZP_04009436.1| type II secretory pathway/competence component protein
           [Lactobacillus salivarius ATCC 11741]
 gi|227866547|gb|EEJ73968.1| type II secretory pathway/competence component protein
           [Lactobacillus salivarius ATCC 11741]
          Length = 357

 Score = 39.7 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/133 (11%), Positives = 48/133 (36%), Gaps = 9/133 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
              I+   + AG  +  ++  I         S   +V +   +G  +S+++         
Sbjct: 34  FFSILSDLLSAGFSLRQSLISI-QNIMPEFYSVSHKVKKNLLMGTKISDALKE------- 85

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    + + ++  G + +++  L  +L  R   + K+++L +      +++  +  
Sbjct: 86  NISKSTYYQLLI-AEQHGEMEKSIKQLGSLLERRVEQQNKLKSLMVYPMILFFMLIIIML 144

Query: 139 CVSTLVYFTSPGY 151
            +   +  T   +
Sbjct: 145 GIKFWLKPTINNF 157


>gi|257057540|ref|YP_003135372.1| Flp pilus assembly protein TadC [Saccharomonospora viridis DSM
           43017]
 gi|256587412|gb|ACU98545.1| Flp pilus assembly protein TadC [Saccharomonospora viridis DSM
           43017]
          Length = 212

 Score = 39.7 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 51/140 (36%), Gaps = 4/140 (2%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
           D++   + AGLPV  AV+ +   ++ PV    R       LG S   +      +    E
Sbjct: 76  DLLGACLIAGLPVPTAVSTVADVATGPVAEVLRSTGNALALGASAESAWQHARNHPDTAE 135

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IGSLPFC 139
           ++  +      +  G  L+     L+  +R+    + + +A       +  + +  LP  
Sbjct: 136 LARAAC---RTASSGSALAAQAFALAERIRNAATDRVEARAQRASVLVAGPLGLCFLPAF 192

Query: 140 VSTLVYFTSPGYMNVLINDP 159
           +   V     G  + L   P
Sbjct: 193 LCLGVIPVVLGLADHLTVTP 212


>gi|227832053|ref|YP_002833760.1| hypothetical protein cauri_0223 [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184093|ref|ZP_06043514.1| hypothetical protein CaurA7_08886 [Corynebacterium aurimucosum ATCC
           700975]
 gi|227453069|gb|ACP31822.1| putative membrane protein [Corynebacterium aurimucosum ATCC 700975]
          Length = 185

 Score = 39.7 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 48/138 (34%), Gaps = 9/138 (6%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           L++    + AGL    AV  +   S      ++        +G+ ++ + S +     L+
Sbjct: 56  LELFAACLEAGLSTRSAVLAVAEASP-----QWSEAAALIGVGVPMNTAWSALASQPHLE 110

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IGSLPF 138
           E+   +    +  + G  ++     L   LR   + +A  +A       +A + +  LP 
Sbjct: 111 ELVRLT---QLSGESGAAMATGCHRLVAQLRAEASAQATARAERAGVFIAAPLAVCFLPA 167

Query: 139 CVSTLVYFTSPGYMNVLI 156
            +   +          L 
Sbjct: 168 FLVLGLIPVLISLGQQLF 185


>gi|239918297|ref|YP_002957855.1| type II secretion system protein F [Micrococcus luteus NCTC 2665]
 gi|239839504|gb|ACS31301.1| type II secretion system protein F [Micrococcus luteus NCTC 2665]
          Length = 339

 Score = 39.7 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 36/141 (25%), Gaps = 7/141 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            LD++   + AG  +  A+  +               +         + +          
Sbjct: 205 VLDVLAALLSAGRSLPAALDDLGRTLPGARGLRATAALLLWGRDWDEAWAGLD-----TD 259

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                 +  +    + G   +  LA  +  +R +     +  A  +       +   L  
Sbjct: 260 PVWIETAARLRPLHRSGMAGARTLAETAAAVRQQTRRADERAAEELAVCLVMPLGLCLLP 319

Query: 139 CVSTLVYFTSPGYMNVLINDP 159
                 +   P  M +L   P
Sbjct: 320 AFVC--WGVVPVVMALLRAGP 338


>gi|309787221|ref|ZP_07681833.1| bacterial type II secretion system F domain protein [Shigella
           dysenteriae 1617]
 gi|308924799|gb|EFP70294.1| bacterial type II secretion system F domain protein [Shigella
           dysenteriae 1617]
          Length = 272

 Score = 39.7 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/110 (12%), Positives = 31/110 (28%), Gaps = 16/110 (14%)

Query: 88  ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           +    +L G L E    L+R  R ++ +  KV++          +   +   +   V   
Sbjct: 1   MIRTGELTGKLDECCFELARQQRAQRQLTDKVKSALRYPIIILAMAIMVVVAMLHFVLPE 60

Query: 148 SPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVMRL 181
                                    +   G +L+       +   ++MR 
Sbjct: 61  FAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGFLLAIANKLLMRR 110


>gi|302388992|ref|YP_003824813.1| Type II secretion system F domain protein [Thermosediminibacter
           oceani DSM 16646]
 gi|302199620|gb|ADL07190.1| Type II secretion system F domain protein [Thermosediminibacter
           oceani DSM 16646]
          Length = 274

 Score = 39.7 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 54/156 (34%), Gaps = 2/156 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +    K+R   F  + P  +D+      A +P+ D   +    +    VR+   R+    
Sbjct: 116 IHFAKKERLEAFRREMPEIVDLFELGAAADVPLEDIFLITAESAQTKEVRNALTRLAAEY 175

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            +       + R    + L E +  +  +    + G  L E L+ LS  L +    K   
Sbjct: 176 VMTREKEGCLRRFCNEVNLPEANILAMALLQGERTGRTL-EILSTLSSSLFNTATAKIAR 234

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           Q  +ME K  A     +   V+  +Y         L
Sbjct: 235 QDKAMEYKVLAATFFLMASIVTLYMYPYFTNIQGGL 270


>gi|229492933|ref|ZP_04386729.1| bacterial type II secretion system protein F domain protein
           [Rhodococcus erythropolis SK121]
 gi|229320207|gb|EEN86032.1| bacterial type II secretion system protein F domain protein
           [Rhodococcus erythropolis SK121]
          Length = 299

 Score = 39.7 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 54/139 (38%), Gaps = 1/139 (0%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESI 69
           +F     + +D++    R G+  + ++ +        V       + E    G +   ++
Sbjct: 156 EFAQALSSYIDLVALCRRGGVGSTQSLEIAAQVGDSWVFLRLDEELYEAGRSGEAPWSAL 215

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
           +R+ + + L E+   + ++++    G ++  +L   +  LR  +    +  A+    K +
Sbjct: 216 TRVSQQLGLAELGDLADIMTMTGDKGASVYTSLRAKAASLRSAQTSAEQSAAVEATEKLA 275

Query: 130 AWIIGSLPFCVSTLVYFTS 148
             + G     ++ L+    
Sbjct: 276 MPLAGLAGLFMALLLIPAV 294


>gi|262044851|ref|ZP_06017894.1| protein transporter HofC [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037820|gb|EEW39048.1| protein transporter HofC [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 155

 Score = 39.7 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 40/136 (29%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
                   I+  +  AG+     +  +    S    R    +       G  + +++SR 
Sbjct: 15  QQLSLIFTILALTQSAGISFLQGLQSVEESLSCPLWRQRLAQARALIVQGEPIWQALSRC 74

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             + P          +    +  G L + L NL+   R++   +A   A  +E       
Sbjct: 75  GGFTP------LCLQLIRTGESAGALDQMLENLAHHHREQTYQRADSLAAHLEPMMLVIT 128

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V  +     
Sbjct: 129 GSLVGILVVAMYLPVF 144


>gi|289192729|ref|YP_003458670.1| Type II secretion system F domain protein [Methanocaldococcus sp.
           FS406-22]
 gi|288939179|gb|ADC69934.1| Type II secretion system F domain protein [Methanocaldococcus sp.
           FS406-22]
          Length = 559

 Score = 39.7 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 52/145 (35%), Gaps = 2/145 (1%)

Query: 16  FPNALDIIVRSVRA-GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           FP+ L  +  SV A G  +  ++  +      P+  + +++ +   LG+  ++S      
Sbjct: 332 FPDFLRSLGDSVSAKGGGMVSSLEYLSNHDFGPLTHDIKKLYKRLALGIDSNKSWRLFGF 391

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                 +  FS + S     GG+   A   +S+  R    ++ K +  +++         
Sbjct: 392 DSCSYLIQLFSDIFSRCIYFGGDPKTAAEIISKNFRKIVQLR-KSKYQNIQQFVGVVYGL 450

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDP 159
                ++          +N L +  
Sbjct: 451 GGGITLALFASLGVAKMINELYSSL 475


>gi|309805401|ref|ZP_07699449.1| type II secretion system F domain protein [Lactobacillus iners
           LactinV 09V1-c]
 gi|308165286|gb|EFO67521.1| type II secretion system F domain protein [Lactobacillus iners
           LactinV 09V1-c]
          Length = 331

 Score = 39.7 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 58/161 (36%), Gaps = 16/161 (9%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            LD + +S+  G   + ++ ++       V +E   +I+     ++       + + +  
Sbjct: 19  FLDYLQQSLNNGFSFNQSLKIL-----PHVWNEKVNIIQKLSSNIAQGN---DIGQSLVA 70

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
              S         +   GNL E+L+ L++I+R +     K+++             ++  
Sbjct: 71  IGFSRMIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIKSEMAYP--------AVLI 122

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            +   +      +++  ++          A    LIGI  +
Sbjct: 123 VMMVSLLIAMQTFLHSELSSDSSSSDFIFAIIISLIGIFFI 163


>gi|312874397|ref|ZP_07734427.1| type II secretion system F domain protein [Lactobacillus iners LEAF
           2052A-d]
 gi|311090009|gb|EFQ48423.1| type II secretion system F domain protein [Lactobacillus iners LEAF
           2052A-d]
          Length = 331

 Score = 39.7 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 58/161 (36%), Gaps = 16/161 (9%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            LD + +S+  G   + ++ ++       V +E   +I+     ++       + + +  
Sbjct: 19  FLDYLQQSLNNGFSFNQSLKIL-----PHVWNEKVNIIQKLSSNIAQGN---DIGQSLVA 70

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
              S         +   GNL E+L+ L++I+R +     K+++             ++  
Sbjct: 71  IGFSRMIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIKSEMAYP--------AVLI 122

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            +   +      +++  ++          A    LIGI  +
Sbjct: 123 VMMVSLLIAMQTFLHSELSSDSSSSDFIFAIIISLIGIFFI 163


>gi|159040452|ref|YP_001539705.1| type II secretion system protein [Salinispora arenicola CNS-205]
 gi|157919287|gb|ABW00715.1| type II secretion system protein [Salinispora arenicola CNS-205]
          Length = 288

 Score = 39.7 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 38/131 (29%), Gaps = 1/131 (0%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMPL 78
           LD++   + A      ++          V       +   Q    S  + +  +   + +
Sbjct: 156 LDLVALQLSAAHGPVQSLERAAEVCDGWVFDRIRESLRLAQLQMHSPWDELRDLADRIGI 215

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
            E+     ++      G  + E L + +  LRD+       +A  +  +        +  
Sbjct: 216 PELGDVGAIMRSSGSEGAQVHETLRSRADSLRDQIRTDNLARAEGVTGRLDIPGALLVFV 275

Query: 139 CVSTLVYFTSP 149
            +    Y    
Sbjct: 276 LLGFGTYPFVA 286


>gi|148807352|gb|ABR13426.1| hypothetical protein [Pseudomonas aeruginosa]
          Length = 328

 Score = 39.7 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 57/174 (32%), Gaps = 10/174 (5%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHLGLSL 65
           R  +         + +   +  G+P+ DAVA +                +   + L    
Sbjct: 19  RKERLQ-----FYESMSTLLENGVPLKDAVAEVHKIFAHEGQHPFHPVAIASREALMGLS 73

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           +         + L         +    ++ GNL +A+ +   ++  +  ++A +    + 
Sbjct: 74  NGKRLATAMALYLPAQER---ALIEAGEMSGNLVQAMGDAVSLVEAQARIRATIWQALLY 130

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             A + ++  L   V+  +  +     + +        L  +A+     GI V+
Sbjct: 131 PLALSAMMVFLLCIVAYRMVPSLARLSDPVTWTGPLATLNAIASFVTGPGIYVL 184


>gi|104779904|ref|YP_606402.1| type II/IV secretion system membrane protein [Pseudomonas
           entomophila L48]
 gi|95108891|emb|CAK13587.1| putative type II/IV secretion system membrane protein [Pseudomonas
           entomophila L48]
          Length = 295

 Score = 39.3 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 54/133 (40%), Gaps = 3/133 (2%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISR 71
           +    + ++      GL V  A+ V+  +       +  E R V++    GL+L   + +
Sbjct: 149 EVSVLIPLLRILFETGLAVEQALRVLAQEGRSLVPNISDELRLVLQRVDSGLALGPELEK 208

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             R + + E+     ++      G    ++L  L  +L DR+    + +   M AK SA 
Sbjct: 209 SARLLAVDELIDTCVILQQLLVQGSGSMKSLLALKELLDDRRLTGLQERVSKMSAKMSAV 268

Query: 132 IIGSLPFCVSTLV 144
           ++  L   +  ++
Sbjct: 269 MMVFLFPALLIVL 281


>gi|323478676|gb|ADX83914.1| type II secretion system protein [Sulfolobus islandicus HVE10/4]
          Length = 658

 Score = 39.3 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 52/177 (29%), Gaps = 3/177 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +      +  P  L  I    + G  +S A+  +        R EF RV++      S+ 
Sbjct: 428 REINDVENSLPQFLRDITEFRKIGYDLSRAIKTLA--GEKKYRREFNRVLDEIVKQDSMG 485

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
             I+R           F  T + +  + G    + L  L+    +    K +  +     
Sbjct: 486 IPITRAKINTRSWLGKFSLTTVQILIEGGAVRPDLLEYLTEFTLNFIQSKREAFSRMRAY 545

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV-LINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           +    +   L      +       +  V L     G        A  ++   ++  M
Sbjct: 546 QVLGILTPILLIATILIAIVIISSFTVVTLPASTLGVPQFPNIIAQFILSSFILAEM 602



 Score = 35.1 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 24/175 (13%), Positives = 58/175 (33%), Gaps = 5/175 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60
           K   ++      D+ P  + +I     +G  + + +  IV       ++ E   +I    
Sbjct: 193 KSRAREVRDSIQDEIPFFVTLITIINASGTTIYEGMRKIVQFPLFKAMKKEALLIIRDID 252

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           L   S  +++    R    ++ S+F    +   + GG++   L   +R   +    + + 
Sbjct: 253 LFGKSPLDALEHRARLTFNRDYSWFLAGYTSIIRSGGDIEAYLFQKAREFLNWLQFRWRF 312

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
            +          +I  L F +  +V      + N  +      + +        I
Sbjct: 313 YSERTSFLGELIVILFLIFPMFLIVLAF---FTNGAVISFLLVIPILFGTILYTI 364


>gi|315653337|ref|ZP_07906259.1| competence protein [Lactobacillus iners ATCC 55195]
 gi|315489262|gb|EFU78902.1| competence protein [Lactobacillus iners ATCC 55195]
          Length = 331

 Score = 39.3 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 58/161 (36%), Gaps = 16/161 (9%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            LD + +S+  G   + ++ ++       V +E   +I+     ++       + + +  
Sbjct: 19  FLDYLQQSLNNGFSFNQSLKIL-----PHVWNEKVNIIQKLSSNIAQGN---DIGQSLVA 70

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
              S         +   GNL E+L+ L++I+R +     K+++             ++  
Sbjct: 71  IGFSRMIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIKSEMAYP--------AVLI 122

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            +   +      +++  ++          A    LIGI  +
Sbjct: 123 VMMVSLLIAMQTFLHSELSSDSSSSDFIFAIIISLIGIFFI 163


>gi|126700914|ref|YP_001089811.1| putative type IV pilus-assembly protein [Clostridium difficile 630]
 gi|254976894|ref|ZP_05273366.1| putative type IV pilus-assembly protein [Clostridium difficile
           QCD-66c26]
 gi|255094281|ref|ZP_05323759.1| putative type IV pilus-assembly protein [Clostridium difficile CIP
           107932]
 gi|255316034|ref|ZP_05357617.1| putative type IV pilus-assembly protein [Clostridium difficile
           QCD-76w55]
 gi|255518691|ref|ZP_05386367.1| putative type IV pilus-assembly protein [Clostridium difficile
           QCD-97b34]
 gi|255651813|ref|ZP_05398715.1| putative type IV pilus-assembly protein [Clostridium difficile
           QCD-37x79]
 gi|260684839|ref|YP_003216124.1| putative type IV pilus-assembly protein [Clostridium difficile
           CD196]
 gi|260688497|ref|YP_003219631.1| putative type IV pilus-assembly protein [Clostridium difficile
           R20291]
 gi|306521601|ref|ZP_07407948.1| putative type IV pilus-assembly protein [Clostridium difficile
           QCD-32g58]
 gi|115252351|emb|CAJ70192.1| putative type II secretion system protein [Clostridium difficile]
 gi|260211002|emb|CBA66306.1| putative type IV pilus-assembly protein [Clostridium difficile
           CD196]
 gi|260214514|emb|CBE07020.1| putative type IV pilus-assembly protein [Clostridium difficile
           R20291]
          Length = 361

 Score = 39.3 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/136 (8%), Positives = 41/136 (30%), Gaps = 5/136 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+ + +A+ +      +    E  ++        +       +    P 
Sbjct: 231 FSRALSVLISSGIQIVEAIDMSASVIDNEFIYERLKISNNYIKKGNSIGKSLNLANVFPK 290

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    ++   +  G L ++L  +++   +  N K +     +E     ++   +  
Sbjct: 291 -----LFISMANTGEESGKLDKSLNVINKFYENELNNKIEQIMKFIEPMLIVFMGLIIGT 345

Query: 139 CVSTLVYFTSPGYMNV 154
            +  +V        N 
Sbjct: 346 FILAMVVPMFDAITNF 361


>gi|215405704|ref|ZP_03417885.1| transmembrane protein [Mycobacterium tuberculosis 02_1987]
          Length = 87

 Score = 39.3 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 33/83 (39%)

Query: 102 LANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           +    R + +R+   A+V A    A+ASA I+  LP     L        ++ L+    G
Sbjct: 1   MRAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVG 60

Query: 162 HMLLGVAAAFMLIGIMVMRLMIN 184
             LL V       G++    + +
Sbjct: 61  GWLLVVGLTLACAGLLWSDRITD 83


>gi|322371246|ref|ZP_08045798.1| type II secretion system protein [Haladaptatus paucihalophilus
           DX253]
 gi|320549236|gb|EFW90898.1| type II secretion system protein [Haladaptatus paucihalophilus
           DX253]
          Length = 640

 Score = 39.3 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 44/157 (28%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-----DPVRSEFRRV 55
           +     +R      +  + +  +   V  G P S AV  +            V       
Sbjct: 409 VSVRRSRRDDAKDREIKDFVHAVSSHVSLGRPFSTAVERVARDVDLGALQPNVNDLAFSS 468

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
             T   G    +++SR V  +          +++    +GG+       L   +    + 
Sbjct: 469 NLTSREGDLRRDALSRFVEDVGTPLADQTIGLVTGTLDVGGDTETVFDTLQVEIGRLYHQ 528

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
           K  +++  +      W+   L   +   V        
Sbjct: 529 KKSLRSNMLVYVVVGWMTALLVVGIMVAVNAYVLDSF 565



 Score = 38.2 bits (87), Expect = 0.60,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 58/195 (29%), Gaps = 22/195 (11%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIET 58
           +      R +      P A+  +         +   +  +    +S       FR+V+  
Sbjct: 142 LGWAASARRSNIERTLPGAVRYLQALSSGSDDLLAMLRKVADREESYGETAVAFRKVLNK 201

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTV-ISVQSQLGGNLSEAL-----ANLSRILRDR 112
             L  S+ + +  + R  P ++V     +     ++ G +  E         LS      
Sbjct: 202 AALTGSVDDGLRIVARDTPSRDVLAPFLLKFREHAEQGPDALEQYLQMEGRMLSHRQSRS 261

Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV--------------LIND 158
                    L  E      ++ +L   V T++   +PG                  +   
Sbjct: 262 HEQAQDFLELLAEMFIVLLVVPALLVIVLTVMSVLAPGLSKPAPPPFGGFSVRTFIVYAS 321

Query: 159 PRGHMLLGVAAAFML 173
               +++G  AA ++
Sbjct: 322 GAFILVIGAGAAVLV 336


>gi|309803910|ref|ZP_07697994.1| type II secretion system F domain protein [Lactobacillus iners
           LactinV 11V1-d]
 gi|309809545|ref|ZP_07703403.1| type II secretion system F domain protein [Lactobacillus iners SPIN
           2503V10-D]
 gi|308164005|gb|EFO66268.1| type II secretion system F domain protein [Lactobacillus iners
           LactinV 11V1-d]
 gi|308170217|gb|EFO72252.1| type II secretion system F domain protein [Lactobacillus iners SPIN
           2503V10-D]
          Length = 331

 Score = 39.3 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 58/161 (36%), Gaps = 16/161 (9%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            LD + +S+  G   + ++ ++       V +E   +I+     ++       + + +  
Sbjct: 19  FLDYLQQSLNNGFSFNQSLKIL-----PHVWNEKVNIIQKLSSNIAQGN---DIGQSLVA 70

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
              S         +   GNL E+L+ L++I+R +     K+++             ++  
Sbjct: 71  IGFSRTIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIKSEMAYP--------AVLI 122

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            +   +      +++  ++          A    LIGI  +
Sbjct: 123 VMMVSLLIAMQTFLHSELSSDSSSSDFIFAIIISLIGIFFI 163


>gi|255308367|ref|ZP_05352538.1| putative type IV pilus-assembly protein [Clostridium difficile ATCC
           43255]
          Length = 361

 Score = 39.3 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 12/136 (8%), Positives = 41/136 (30%), Gaps = 5/136 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+ + +A+ +      +    E  ++        +       +    P 
Sbjct: 231 FSRALSVLISSGIQIVEAIDMSASVIDNEFIYERLKISNNYIKKGNSIGKSLNLANIFPK 290

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    ++   +  G L ++L  +++   +  N K +     +E     ++   +  
Sbjct: 291 -----LFISMANTGEESGKLDKSLNVINKFYENELNNKIEQIMKFIEPMLIVFMGLIIGT 345

Query: 139 CVSTLVYFTSPGYMNV 154
            +  +V        N 
Sbjct: 346 FILAMVVPMFDAITNF 361


>gi|124027108|ref|YP_001012428.1| hypothetical protein Hbut_0211 [Hyperthermus butylicus DSM 5456]
 gi|123977802|gb|ABM80083.1| hypothetical protein Hbut_0211 [Hyperthermus butylicus DSM 5456]
          Length = 297

 Score = 39.3 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 52/170 (30%), Gaps = 1/170 (0%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
             F +     L I+   + A    +DA+         P  S   R+         L  + 
Sbjct: 87  RMFEEQLIEFLLILPGMLAASPSTADALLRTARMLRPPFNSYVERMARIYASTGDLERAF 146

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
           +      P +     +  +   ++ GG++   L+ ++      + +    +A   E K  
Sbjct: 147 NEAFTAAPSKV-RILARSVVTAAKTGGHIHIVLSKVAAYADASRRLVGLAEARLSEYKMI 205

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           A +        + +          V +      +  GV A      ++++
Sbjct: 206 AGLAAVAYALTAGVTVALVAQATAVPLPGMTTRIDTGVLAGLYFYSLIMI 255


>gi|182678560|ref|YP_001832706.1| type II secretion system protein [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182634443|gb|ACB95217.1| type II secretion system protein [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 398

 Score = 39.3 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 52/156 (33%), Gaps = 5/156 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L+ +   +R+GLP+ +A+ +       P+      +      G S S+++ +       
Sbjct: 66  FLNELALLLRSGLPLVEALDLGAHGLPKPLARAVTSLRGALLEGKSFSQALRQRPEVFGP 125

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    ++  ++  G+L   LA +++     + +  KV A              +  
Sbjct: 126 -----LIAALAEVAETVGDLDGMLAAVAKQRASDQALSDKVSAALRYPAFLTISAFLVLL 180

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
                V     G ++    DP   +      +  L+
Sbjct: 181 FFLLQVIPQFDGVVSEGSGDPGVLVATVFGLSHWLV 216


>gi|323475960|gb|ADX86566.1| type II secretion system protein [Sulfolobus islandicus REY15A]
          Length = 658

 Score = 39.3 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 52/177 (29%), Gaps = 3/177 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +      +  P  L  I    + G  +S A+  +        R EF RV++      S+ 
Sbjct: 428 REINDVENSLPQFLRDITEFRKIGYDLSRAIKTLA--GEKKYRREFNRVLDEIVKQDSMG 485

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
             I+R           F  T + +  + G    + L  L+    +    K +  +     
Sbjct: 486 IPITRAKINTRSWLGKFSLTTVQILIEGGAVRPDLLEYLTEFTLNFIQSKREAFSRMRAY 545

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV-LINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           +    +   L      +       +  V L     G        A  ++   ++  M
Sbjct: 546 QVLGILTPILLIATILIAIVIISSFTVVTLPASTLGVPQFPNIIAQFILSSFILAEM 602



 Score = 34.7 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 57/175 (32%), Gaps = 5/175 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60
           K   ++      D+ P  + +I     +G  + + +  IV       ++ E   +I    
Sbjct: 193 KSRAREVRDSIQDEIPFFVTLITIINASGTTIYEGMRKIVQFPLFKAMKKEALLIIRDID 252

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
               S  +++    R    ++ S+F    +   + GG++   L   +R   +    + + 
Sbjct: 253 FFGKSPLDALEHRARLTFNRDYSWFLAGYTSIIRSGGDIEAYLFQKAREFLNWLQFRWRF 312

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
            +          +I  L F +  +V      + N  +      + +        I
Sbjct: 313 YSERTSFLGELIVILFLIFPMFLIVLAF---FTNGAVISFLLVIPILFGTILYTI 364


>gi|170077322|ref|YP_001733960.1| type IV pilus biogenesis protein [Synechococcus sp. PCC 7002]
 gi|169884991|gb|ACA98704.1| type IV pilus biogenesis protein [Synechococcus sp. PCC 7002]
          Length = 412

 Score = 39.3 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/137 (10%), Positives = 41/137 (29%), Gaps = 7/137 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
              I     R+G+P+ ++  ++   + +  +             G  LS ++ R      
Sbjct: 281 FCRIFGTLTRSGVPILNSFDIVGATAGNVVIAKAINDAKSEIQEGGMLSVALDR------ 334

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +     +  +    +  G L   +  ++    D      K     +E      I   + 
Sbjct: 335 DRVFPILAIQMMTIGEETGELDSMMMKVADFYEDEVEQTVKALTSILEPAMMVIIAAMVG 394

Query: 138 FCVSTLVYFTSPGYMNV 154
             + ++       + ++
Sbjct: 395 VILLSMYLPMFKVFEDL 411


>gi|319651530|ref|ZP_08005658.1| hypothetical protein HMPREF1013_02270 [Bacillus sp. 2_A_57_CT2]
 gi|317396845|gb|EFV77555.1| hypothetical protein HMPREF1013_02270 [Bacillus sp. 2_A_57_CT2]
          Length = 343

 Score = 39.3 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 52/178 (29%), Gaps = 17/178 (9%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L      +  G P+S+A+  ++ Q     + E  + +     G    + ++ M      
Sbjct: 14  FLKNTGELLSRGYPLSEALESMMHQLPPKRKHEISQCLSQLKEGFPFYQILANM------ 67

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
              +         ++  G L+ A    S ++  +     K+Q L        +I   L  
Sbjct: 68  -NFNNNLIGYVFFAEQHGGLASAFLEGSEMVLRKGKDIQKLQKLMTYPIFLMFITAFLFV 126

Query: 139 CV----------STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
            V            +     P +    +      + L +      +  +++     F 
Sbjct: 127 FVDKVLLPRFSSLFVSMHLKPNFFTKAVYLFGDLLPLFILIVLFGLVTLLIYYFFRFR 184


>gi|312872427|ref|ZP_07732496.1| type II secretion system F domain protein [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092009|gb|EFQ50384.1| type II secretion system F domain protein [Lactobacillus iners LEAF
           2062A-h1]
          Length = 331

 Score = 39.3 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 58/161 (36%), Gaps = 16/161 (9%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            LD + +S+  G   + ++ ++       V +E   +I+     ++       + + +  
Sbjct: 19  FLDYLQQSLNNGFSFNQSLKIL-----PHVWNEKVNIIQKLSSNIAQGN---DIGQSLVA 70

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
              S         +   GNL E+L+ L++I+R +     K+++             ++  
Sbjct: 71  IGFSRMIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIKSEMAYP--------AVLI 122

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            +   +      +++  ++          A    LIGI  +
Sbjct: 123 VMMVSLLIAMQTFLHSELSSDSSSSDFIFAIIISLIGIFFI 163


>gi|238918693|ref|YP_002932207.1| protein transport protein HofC [Edwardsiella ictaluri 93-146]
 gi|238868261|gb|ACR67972.1| protein transport protein HofC [Edwardsiella ictaluri 93-146]
          Length = 398

 Score = 39.3 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/140 (10%), Positives = 42/140 (30%), Gaps = 6/140 (4%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRY 75
            + +  +   + AG+P+  A+ ++              ++      GL+LS+++      
Sbjct: 61  SDFIAQLADLLEAGVPLLSALDLMANGHPHTEWRVLIHQLSREVADGLTLSQALRGQPAI 120

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P       +       +  G L++    L+R  +    +  ++            +   
Sbjct: 121 FPALYSRTLAAA-----EQSGALADVCRQLARQQQQAHALHQRLLRALRYPLFLLSVALL 175

Query: 136 LPFCVSTLVYFTSPGYMNVL 155
           +   +   +          L
Sbjct: 176 IALGMLLTLLPQFAQLYASL 195



 Score = 35.9 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/132 (11%), Positives = 33/132 (25%), Gaps = 5/132 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                 ++   ++AG+ +  A+                     +     L  +  R    
Sbjct: 264 LAQLFQMLSLMLQAGITLPAALNCCRRSLPLAAYRRALHTGVLRLRQGELLSAALRDPHL 323

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P Q        +  Q +  G L+    +L    R     +++  A   E          
Sbjct: 324 FPPQ-----CRQLIRQGEAAGRLAAVSHHLGEFYRHSAQRRSETLASLAEPAMLVISATL 378

Query: 136 LPFCVSTLVYFT 147
           +   V  +    
Sbjct: 379 IALLVLAMYLPI 390


>gi|170079287|ref|YP_001735925.1| Type II secretory pathway, putative [Synechococcus sp. PCC 7002]
 gi|169886956|gb|ACB00670.1| Type II secretory pathway, putative [Synechococcus sp. PCC 7002]
          Length = 308

 Score = 39.3 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 52/158 (32%), Gaps = 6/158 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                     +  +++AG+ +  AVA+ +G+     R  ++ VI     G  L ES   +
Sbjct: 3   EQQQALFFRQLGATLKAGMGLGQAVALAMGEIPRRAREPWQGVILQLERGHGLRESWLPV 62

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                  + S ++  +   ++  G L     ++S  L +    +  ++ + +        
Sbjct: 63  -----RSQFSAWAIALLEIAETSGALVSVCRDVSDTLVEMAERRRLIRGILLRG-LVMVW 116

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
              +   +       +  +    +      M+    A 
Sbjct: 117 SWVMVIYLLLGGSLLAGDFGATALTTAIALMVFLYGAI 154


>gi|330011992|ref|ZP_08307209.1| bacterial type II secretion system protein F domain protein
           [Klebsiella sp. MS 92-3]
 gi|328533981|gb|EGF60633.1| bacterial type II secretion system protein F domain protein
           [Klebsiella sp. MS 92-3]
          Length = 163

 Score = 39.3 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 40/136 (29%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
                   I+  +  AG+     +  +    S    R    +       G  + +++SR 
Sbjct: 23  QQLSLIFTILALTQSAGISFLQGLQSVEESLSCPLWRQRLAQARALIVQGEPIWQALSRC 82

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             + P          +    +  G L + L NL+   R++   +A   A  +E       
Sbjct: 83  GGFTP------LCLQLIRTGESAGALDQMLENLAHHHREQTYQRADSLAAHLEPMMLVIT 136

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V  +     
Sbjct: 137 GSLVGILVVAMYLPVF 152


>gi|237756396|ref|ZP_04584940.1| pilin biogenesis protein [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691447|gb|EEP60511.1| pilin biogenesis protein [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 250

 Score = 39.3 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 7/84 (8%)

Query: 108 ILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
                  ++ K+ + S    A   I   +   + T V  T          +      + +
Sbjct: 2   YYEKLAAIRRKIISASWYPAAVLIIATVIVLGLLTFVVPTFAEIYASFGGELPFLTQILI 61

Query: 168 AA-------AFMLIGIMVMRLMIN 184
                       ++G  V+ ++IN
Sbjct: 62  NISNILKENILYVMGFFVILVIIN 85


>gi|271962853|ref|YP_003337049.1| hypothetical protein Sros_1308 [Streptosporangium roseum DSM 43021]
 gi|270506028|gb|ACZ84306.1| hypothetical protein Sros_1308 [Streptosporangium roseum DSM 43021]
          Length = 311

 Score = 39.3 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 62/166 (37%), Gaps = 12/166 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K    +    F       LD++  ++  G  V +A+ + V   S     E       + 
Sbjct: 149 IKRDAARMRRDFRHVVGAFLDLVAMNLAGGRGVPEALMMAVSVGSPGADDEGANWAMNRI 208

Query: 61  LG---------LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111
                      ++  +++ ++   + + E+   S  + + +  G  +  +L   +  LR 
Sbjct: 209 REALGNARIVGITPWQALGQLGDEINVDELRDLSAALGLVADDGAKVRASLTARAATLRR 268

Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           R+  + +        ++ + ++  L  C   +++ + P  M +L +
Sbjct: 269 RELAEVE---GQAGERSQSMLVAQLLLCAGFVIFLSFPAAMKMLGS 311


>gi|300790608|ref|YP_003770899.1| type II secretion system protein [Amycolatopsis mediterranei U32]
 gi|299800122|gb|ADJ50497.1| type II secretion system protein [Amycolatopsis mediterranei U32]
          Length = 252

 Score = 39.3 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 56/173 (32%), Gaps = 15/173 (8%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             AL  +V  +R+G                   +    V        +L+ + +R+   +
Sbjct: 92  ATALRTMVAELRSGA-----------HPVTAAEAAAEVVPAVAGDLRALATA-ARLDTEV 139

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
           P   +   +   ++  + G  +++ L    R          +++A     +ASA ++  L
Sbjct: 140 PAPALPRLAAAWTLAKRHGLPMADVLDAARRDAEAGLAFGRRMRAKLAGPRASAAVLTGL 199

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM---INFD 186
           P     L        ++VL     G +LL      +  G    R +   +   
Sbjct: 200 PVLCVLLGQAMGAAPLSVLTGSTPGQVLLVAGCVLLWAGTAWCRALSGRVRIR 252


>gi|145588373|ref|YP_001154970.1| type II secretion system protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046779|gb|ABP33406.1| type II secretion system protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 348

 Score = 39.3 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 40/133 (30%), Gaps = 1/133 (0%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                  +   + +GLP+ DA+ V    S+  +  +    +              +    
Sbjct: 211 LTYWCRTLGHLLESGLPLPDALRVTAQSSNHWLSHDCSAEVFKHLTQGWPLGEALKRGDP 270

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                      ++ + S+ G  LS+ L   +  L  + + +    + ++E      +   
Sbjct: 271 KSRLFDHETLQLLHIASESGC-LSQMLNKRAMTLGSQLSNRLNSLSQTLEPLLIIVVGFI 329

Query: 136 LPFCVSTLVYFTS 148
           +   V  L     
Sbjct: 330 IGSLVIILYLPIF 342


>gi|86151953|ref|ZP_01070166.1| general secretory pathway protein F [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315124905|ref|YP_004066909.1| general secretory pathway protein F [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85841061|gb|EAQ58310.1| general secretory pathway protein F [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315018627|gb|ADT66720.1| general secretory pathway protein F [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 392

 Score = 38.9 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 56/181 (30%), Gaps = 10/181 (5%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
                ++F      +      GL V +A+  +            +++++   L  +L+++
Sbjct: 50  QRLKDENFILFFKELALLCEVGLSVQEAIREL---YLMHSCKIMKKILDNLILAQNLNQA 106

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                       ++     +   ++  G +SE  + +S++       + +++        
Sbjct: 107 FENA-----NFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPTL 161

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMINFD 186
               I      +   V          L        H++L +       GI  + L + F 
Sbjct: 162 VFLSIIGAFLFLMLFVVPNFKDLFENLGVSLPFITHVMLEIYNFLDDYGIFCIFLFVIFI 221

Query: 187 V 187
           V
Sbjct: 222 V 222


>gi|291546645|emb|CBL19753.1| Bacterial type II secretion system protein F domain [Ruminococcus
           sp. SR1/5]
          Length = 151

 Score = 38.9 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 50/150 (33%), Gaps = 8/150 (5%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIV----GQSSDPVRSEFRRV---IETQHLGLS 64
            L D+P  +      V+AGL    A   I      +     R  +  +         G+S
Sbjct: 1   MLMDYPGLIMKFTLLVQAGLTARKAFQKIALDYGKREDGKKREAYEEIRVACYEMDSGIS 60

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +E+  R        +    ST++     +    L++ L   S    + +  KA+V   +
Sbjct: 61  EAEAYRRFGERCGQVKYKTLSTLLIQNLQKGSRYLADLLEKESVEAWEERKRKARVLGDT 120

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153
              K    ++  L   ++ ++      +  
Sbjct: 121 AATKLLLPMVLMLLVVMAVIMLPACLSFYG 150


>gi|28493667|ref|NP_787828.1| hypothetical protein TWT700 [Tropheryma whipplei str. Twist]
 gi|28572860|ref|NP_789640.1| integral membrane protein [Tropheryma whipplei TW08/27]
 gi|28410993|emb|CAD67378.1| putative integral membrane protein [Tropheryma whipplei TW08/27]
 gi|28476709|gb|AAO44797.1| unknown [Tropheryma whipplei str. Twist]
          Length = 310

 Score = 38.9 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 57/164 (34%), Gaps = 3/164 (1%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET---QHLGLSLSESISRMVRYMPLQ 79
           +   +  G+  + A       + +  +      +     + +   + ES    +      
Sbjct: 22  LAVLLDGGITPASAWKHASHTTDNYPKQFTAACLAAGSGRDIAAGIRESDFSGLESPEKH 81

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +    V ++ G N++ +L +LSR      +++ + Q       ++A I+G LP  
Sbjct: 82  AWFALAAAWWVGTRSGANMANSLLSLSRAFSHIASVQREAQVAMAGPSSTAKIVGFLPIF 141

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
              L      G +NVL+    G + L      M I       MI
Sbjct: 142 SLVLSAALGFGALNVLLFSIPGLLCLSGGLLLMFIYKRWTGSMI 185


>gi|227831596|ref|YP_002833376.1| type II secretion system protein [Sulfolobus islandicus L.S.2.15]
 gi|284999148|ref|YP_003420916.1| type II secretion system protein [Sulfolobus islandicus L.D.8.5]
 gi|227458044|gb|ACP36731.1| type II secretion system protein [Sulfolobus islandicus L.S.2.15]
 gi|284447044|gb|ADB88546.1| type II secretion system protein [Sulfolobus islandicus L.D.8.5]
          Length = 658

 Score = 38.9 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 51/177 (28%), Gaps = 3/177 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +      +  P  L  I    + G  +S A+  +        R EF RV++      S+ 
Sbjct: 428 REINDVENSLPQFLRDITEFRKIGYDLSRAIKTLA--GEKKYRREFNRVLDEIVKQDSMG 485

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
             I+R           F  T + +  + G    + L  L+    +    K +  +     
Sbjct: 486 IPITRAKINTRSWLGKFSLTTVQILIEGGAVRPDLLEYLTEFTLNFIQSKREAFSRMRAY 545

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV-LINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           +    +   L      +       +  V L     G           ++   ++  M
Sbjct: 546 QVLGILTPILLIATILIAIVIISSFTVVTLPASTLGVPQFPNIITQFILSSFILAEM 602



 Score = 35.1 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 57/175 (32%), Gaps = 5/175 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60
           K   ++      D+ P  + +I     +G  + + +  IV       ++ E   +I    
Sbjct: 193 KSRAREVRDSIQDEIPFFVTLITIINASGTTIYEGMRKIVQFPLFKAMKKEALLIIRDID 252

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
               S  +++    R    ++ S+F    +   + GG++   L   +R   +    + + 
Sbjct: 253 FFGKSPLDALEHRARLTFNRDYSWFLAGYTSIIRSGGDIEAYLFQKAREFLNWLQFRWRF 312

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
            +          +I  L F +  +V      + N  +      + +        I
Sbjct: 313 YSERTSFLGELIVILFLIFPMFLIVLAF---FTNGAVISFLLVIPILFGTILYTI 364


>gi|255102462|ref|ZP_05331439.1| putative type IV pilus-assembly protein [Clostridium difficile
           QCD-63q42]
          Length = 361

 Score = 38.9 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 12/136 (8%), Positives = 41/136 (30%), Gaps = 5/136 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + +G+ + +A+ +      +    E  ++        +       +    P 
Sbjct: 231 FSRALSVLISSGIQIVEAIDMSASVVDNEFIYERLKISNNYIKKGNSIGKSLNLANIFPK 290

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    ++   +  G L ++L  +++   +  N K +     +E     ++   +  
Sbjct: 291 -----LFISMANTGEESGKLDKSLNVINKFYENELNNKIEQIMKFIEPMLIVFMGLIIGT 345

Query: 139 CVSTLVYFTSPGYMNV 154
            +  +V        N 
Sbjct: 346 FILAMVVPMFDAITNF 361


>gi|253681650|ref|ZP_04862447.1| bacterial type II secretion system protein F [Clostridium botulinum
           D str. 1873]
 gi|253561362|gb|EES90814.1| bacterial type II secretion system protein F [Clostridium botulinum
           D str. 1873]
          Length = 396

 Score = 38.9 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 51/138 (36%), Gaps = 6/138 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   ++AG+ +  A+ VI  Q  + +     + +      G +L +SI++  +  P
Sbjct: 65  VCKQLGELLKAGVNIETALEVIENQKINYLIGDSLKTIRRDIEKGRTLFQSINKFSKIYP 124

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                 F   + +  +  GNL +    L++   D+  +K K++   M       +   + 
Sbjct: 125 -----EFMRQMILIGEKSGNLEDIFLKLAKYYTDKHKIKKKIKNAIMYPLCVLIMTIIVT 179

Query: 138 FCVSTLVYFTSPGYMNVL 155
             ++  +          L
Sbjct: 180 LFITFRIIPKFATNFIKL 197


>gi|229580548|ref|YP_002838948.1| type II secretion system protein [Sulfolobus islandicus Y.G.57.14]
 gi|229583406|ref|YP_002841805.1| type II secretion system protein [Sulfolobus islandicus Y.N.15.51]
 gi|228011264|gb|ACP47026.1| type II secretion system protein [Sulfolobus islandicus Y.G.57.14]
 gi|228014122|gb|ACP49883.1| type II secretion system protein [Sulfolobus islandicus Y.N.15.51]
          Length = 658

 Score = 38.9 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 51/177 (28%), Gaps = 3/177 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +      +  P  L  I    + G  +S A+  +        R EF RV++      S+ 
Sbjct: 428 REINDVENSLPQFLRDITEFRKIGYDLSRAIKTLA--GEKKYRREFNRVLDEIVKQDSMG 485

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
             I+R           F  T + +  + G    + L  L+    +    K +  +     
Sbjct: 486 IPITRAKINTRSWLGKFSLTTVQILIEGGAVRPDLLEYLTEFTLNFIQSKREAFSRMRAY 545

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV-LINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           +    +   L      +       +  V L     G           ++   ++  M
Sbjct: 546 QVLGILTPILLIATILIAIVIISSFTVVTLPASTLGVPQFPNIITQFILSSFILAEM 602



 Score = 35.1 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 57/175 (32%), Gaps = 5/175 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60
           K   ++      D+ P  + +I     +G  + + +  IV       ++ E   +I    
Sbjct: 193 KSRAREVRDSIQDEIPFFVTLITIINASGTTIYEGMRKIVQFPLFKAMKKEALLIIRDID 252

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
               S  +++    R    ++ S+F    +   + GG++   L   +R   +    + + 
Sbjct: 253 FFGKSPLDALEHRARLTFNRDYSWFLAGYTSIIRSGGDIEAYLFQKAREFLNWLQFRWRF 312

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
            +          +I  L F +  +V      + N  +      + +        I
Sbjct: 313 YSERTSFLGELIVILFLIFPMFLIVLAF---FTNGAVISFLLVIPILFGTILYTI 364


>gi|167758849|ref|ZP_02430976.1| hypothetical protein CLOSCI_01192 [Clostridium scindens ATCC 35704]
 gi|167663589|gb|EDS07719.1| hypothetical protein CLOSCI_01192 [Clostridium scindens ATCC 35704]
          Length = 386

 Score = 38.9 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 53/167 (31%), Gaps = 6/167 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
                   L+ +     +G  + +A+A +   + +P        +  ++         S 
Sbjct: 129 VDQQIDTFLNNVRVLTASGFSLPEAIAEVKENAKEP----ADITLIDKNGHGGRRTMYSF 184

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M +YMP   +S     ++               L   +  ++     +   ++   A   
Sbjct: 185 MYQYMPYILLSILCYSLTYIMIAFNKPDVKRRMLCSAVSGKRQNAQLILGYAVIGLAVWV 244

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +   LP  +    +   P   + L N     ++L   +   L+G +V
Sbjct: 245 LCNMLPVLMYGKEFLKDPHLPHYLFNS--FLLMLVSLSISFLVGSLV 289


>gi|213852420|ref|ZP_03381952.1| general secretory pathway component, cryptic [Salmonella enterica
          subsp. enterica serovar Typhi str. M223]
          Length = 92

 Score = 38.9 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 5  IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62
          +K R  +    +       +     A LP+ +++AVI  QSS+  +     +V      G
Sbjct: 10 VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLGDVLNQVRSAILEG 69

Query: 63 LSLSESISRMV 73
            LS+++    
Sbjct: 70 HPLSDALQHFP 80


>gi|229586069|ref|YP_002844571.1| type II secretion system protein [Sulfolobus islandicus M.16.27]
 gi|228021119|gb|ACP56526.1| type II secretion system protein [Sulfolobus islandicus M.16.27]
          Length = 658

 Score = 38.9 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 51/177 (28%), Gaps = 3/177 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +      +  P  L  I    + G  +S A+  +        R EF RV++      S+ 
Sbjct: 428 REINDVENSLPQFLRDITEFRKIGYDLSRAIKTLA--GEKKYRREFNRVLDEIVKQDSMG 485

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
             I+R           F  T + +  + G    + L  L+    +    K +  +     
Sbjct: 486 IPITRAKINTRSWLGKFSLTTVQILIEGGAVRPDLLEYLTEFTLNFIQSKREAFSRMRAY 545

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV-LINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           +    +   L      +       +  V L     G           ++   ++  M
Sbjct: 546 QVLGILTPILLIATILIAIVIISSFTVVTLPASTLGVPQFPNIITQFILSSFILAEM 602



 Score = 35.1 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 57/175 (32%), Gaps = 5/175 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60
           K   ++      D+ P  + +I     +G  + + +  IV       ++ E   +I    
Sbjct: 193 KSRAREVRDSIQDEIPFFVTLITIINASGTTIYEGMRKIVQFPLFKAMKKEALLIIRDID 252

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
               S  +++    R    ++ S+F    +   + GG++   L   +R   +    + + 
Sbjct: 253 FFGKSPLDALEHRARLTFNRDYSWFLAGYTSIIRSGGDIEAYLFQKAREFLNWLQFRWRF 312

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
            +          +I  L F +  +V      + N  +      + +        I
Sbjct: 313 YSERTSFLGELIVILFLIFPMFLIVLAF---FTNGAVISFLLVIPILFGTILYTI 364


>gi|254478362|ref|ZP_05091741.1| hypothetical protein CDSM653_1507 [Carboxydibrachium pacificum DSM
           12653]
 gi|214035720|gb|EEB76415.1| hypothetical protein CDSM653_1507 [Carboxydibrachium pacificum DSM
           12653]
          Length = 249

 Score = 38.9 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 48/145 (33%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            ++ P AL+I +  +  G+   + ++ IV      VR            G SL ++++  
Sbjct: 103 EEELPAALEIFISGLEVGMNKENIISYIVRTREGVVRDLLYEAQIRLDTGSSLKDALTFA 162

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                      F   I+ + +   ++ E L  L   + ++   +   +A  ++      I
Sbjct: 163 ADKSLNDHFRRFVKAITGEYESVKDMRENLEELLEEVEEKNYNQKIERAAVLDNSLFFPI 222

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIN 157
                  +  +        +    N
Sbjct: 223 FLGYFVPILIMFALPFVISLRSFFN 247


>gi|254167666|ref|ZP_04874517.1| Bacterial type II secretion system protein F domain
           [Aciduliprofundum boonei T469]
 gi|197623475|gb|EDY36039.1| Bacterial type II secretion system protein F domain
           [Aciduliprofundum boonei T469]
          Length = 550

 Score = 38.9 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/149 (10%), Positives = 48/149 (32%), Gaps = 2/149 (1%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH-LGL 63
           +KR  +        +  +       LP  +   ++   +    +  E  ++        L
Sbjct: 73  EKRKKEIERYMHLFITRMAVLASTRLPRKEIFRILSEVREYGALSDEVAKIYNLMEYWNL 132

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           SL ++   + +  P  E++ F   ++  +  G +    L     ++ +   +K +     
Sbjct: 133 SLPDATRIVAKKCPSVELADFLDRLAHSADAGEDFEVFLEKERTVVMETYAIKYEAALSQ 192

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
           M+     ++   +      +     P + 
Sbjct: 193 MDVYKETFVSMLISMLFFAVFVAILPMFT 221


>gi|238764792|ref|ZP_04625734.1| General secretion pathway protein [Yersinia kristensenii ATCC
           33638]
 gi|238696990|gb|EEP89765.1| General secretion pathway protein [Yersinia kristensenii ATCC
           33638]
          Length = 377

 Score = 38.9 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 43/115 (37%), Gaps = 6/115 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   V A +P+ + + +I  Q + + V S    + +    G S S+S+S+
Sbjct: 37  NMDLVLITRQMSILVNASIPLDETLEIIEKQGAKNNVNSVIHEIRKKILEGHSFSDSLSQ 96

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
                     +     +    +L G+L   L+ L+  +     ++ K+    +  
Sbjct: 97  FP-----VVFNSLYRSMIAAGELSGHLGLVLSKLADHIEQAYKVRNKIIQALVYP 146


>gi|302038134|ref|YP_003798456.1| general secretion pathway protein F [Candidatus Nitrospira
           defluvii]
 gi|300606198|emb|CBK42531.1| General secretion pathway protein F [Candidatus Nitrospira
           defluvii]
          Length = 404

 Score = 38.9 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 46/151 (30%), Gaps = 7/151 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           ++  ++AGLPV     +++ ++      E  + +           + +           S
Sbjct: 74  LLALIKAGLPVLRVWDLLIDRTQRAPFREALKAVRQDI----RGGASASEALGKHSSYFS 129

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
                     +  GNL+E L      L+    ++ KV            +  +    V  
Sbjct: 130 DLYLATIRAGEQSGNLAEVLQRYIAYLKLMIGLRQKVTKALAYPAFLVVVGVA---VVGF 186

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           L+ +  P +++V                 ++
Sbjct: 187 LLSYVMPTFISVYGESSANLPTATRMLISVI 217


>gi|257386199|ref|YP_003175972.1| type II secretion system protein [Halomicrobium mukohataei DSM
           12286]
 gi|257168506|gb|ACV46265.1| type II secretion system protein [Halomicrobium mukohataei DSM
           12286]
          Length = 630

 Score = 38.9 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 60/185 (32%), Gaps = 8/185 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQ 59
           ++ + K R +      P A+  +             +  +  Q +       F+R++   
Sbjct: 130 LRWVGKARRSDIEATLPGAVRYLRVLASGEHDQRAMLGRVADQDAYGETAVAFQRILNRA 189

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTV-ISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            L  SL E +  +    P +++     +     +    +  E    +   L   +  +  
Sbjct: 190 ALTGSLDEGLEHVASETPSRDLLAPFLLKFREHANQSADALEGYLQMEGRLLSHEQSRRH 249

Query: 119 VQ-----ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
            +      L  E      ++ +L   + T++   SPG    +   P G M +     +  
Sbjct: 250 ERATGFLELLAELFVVLLVLPALLVLIVTIMGVLSPGLSEQV-ATPAGPMTVRSVLVYGS 308

Query: 174 IGIMV 178
            G ++
Sbjct: 309 AGFVL 313



 Score = 36.3 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/172 (11%), Positives = 46/172 (26%), Gaps = 15/172 (8%)

Query: 8   RTAKFL----DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---------SSDPVRSEFRR 54
           R AK       +  + +  +   V  G P S+AV  +  +               +    
Sbjct: 399 RRAKVDDAKDREIQDFVHAVSGHVSLGRPFSEAVERVAEEVDLGALQSDVDQLAFTLGLT 458

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
                      + ++ R V  +          ++      G +  +    L   +    +
Sbjct: 459 ASPDDDATDGRAAALDRFVERVGTPMAEQTIGLVVGALDAGSDAEDVFETLQTEIGKLYH 518

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHML 164
            +  +++  +   A  W    L   +   V          L  ++   G  +
Sbjct: 519 ERKALRSSLLVYVAVGWTTALLVVGIVVAVNAYVLDGFAQLSTVSSGPGITI 570


>gi|238792810|ref|ZP_04636441.1| General secretion pathway protein [Yersinia intermedia ATCC 29909]
 gi|238727918|gb|EEQ19441.1| General secretion pathway protein [Yersinia intermedia ATCC 29909]
          Length = 389

 Score = 38.9 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 38/123 (30%), Gaps = 4/123 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            DD       +   V A +P+ + + VI  Q     ++    +I      + +       
Sbjct: 49  NDDLVLITRQMSTLVNAAIPLDEVLEVIEKQ---NKKNIMNGIIRDIRKKV-VEGYSLSD 104

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    +     +    ++ G+L   L+ L+  +   + +K K+    +       +
Sbjct: 105 SLSHHSNVFNPLYRSMITAGEISGHLGMILSRLADHIEQTQKVKRKLGQTLIYPAILIIV 164

Query: 133 IGS 135
              
Sbjct: 165 SLG 167


>gi|227826590|ref|YP_002828369.1| type II secretion system protein [Sulfolobus islandicus M.14.25]
 gi|229583754|ref|YP_002842255.1| type II secretion system protein [Sulfolobus islandicus M.16.27]
 gi|238618676|ref|YP_002913501.1| type II secretion system protein [Sulfolobus islandicus M.16.4]
 gi|227458385|gb|ACP37071.1| type II secretion system protein [Sulfolobus islandicus M.14.25]
 gi|228018803|gb|ACP54210.1| type II secretion system protein [Sulfolobus islandicus M.16.27]
 gi|238379745|gb|ACR40833.1| type II secretion system protein [Sulfolobus islandicus M.16.4]
          Length = 616

 Score = 38.9 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/183 (11%), Positives = 58/183 (31%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L + R      + P    +    +R+GL        +   ++    S+    +  + 
Sbjct: 117 LSQLTENRRIGLDSEAPAFAAVFNVFLRSGLSARYVFDYLSKSTAMQYASQIASYVNKRV 176

Query: 61  LG--LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
                 +  +I   + Y P +  + F T      + G  + + +   ++ +       A 
Sbjct: 177 KYLGEGVESAIVESLNYSPSKIFNEFLTTYVTAVRTGAPVLDTMEAKTKDILKNIETLAS 236

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM-LIGIM 177
             A ++   A  ++I      ++  +          L       ++   A   + LI ++
Sbjct: 237 TAAENLSGIAEGFVIWLSSGFITFFLVLLLQAIFPSLFGSVPFPIMAIFAMIMIPLINLL 296

Query: 178 VMR 180
            + 
Sbjct: 297 FIW 299


>gi|300173922|ref|YP_003773088.1| ComG operon protein 2 [Leuconostoc gasicomitatum LMG 18811]
 gi|299888301|emb|CBL92269.1| ComG operon protein 2 [Leuconostoc gasicomitatum LMG 18811]
          Length = 344

 Score = 38.9 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 67/182 (36%), Gaps = 12/182 (6%)

Query: 1   MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           +    KKR   F   +       +   +++G  +S ++ ++   +    +   RRVI+  
Sbjct: 5   LTKFQKKRVKHFKTSEQVLFFQELGELLQSGYSISQSLDILA-SAHTKWQHWLRRVIKEL 63

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           + G +L   + +        +VS    +    +   GNL+E L  +   L   +  + KV
Sbjct: 64  NQGFALHVILRK--------DVSNQILLQLKLADQHGNLTETLVAIGENLAKLQQQQNKV 115

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGY--MNVLINDPRGHMLLGVAAAFMLIGIM 177
             +         ++G +   +   +Y     +   + +      + L  +    +L  ++
Sbjct: 116 TQVMRYPIILFGLLGMMFVGLKYFLYPILNQWQDTSTIGTKESHNYLYFIVGMIILFSLV 175

Query: 178 VM 179
           ++
Sbjct: 176 II 177



 Score = 37.0 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/130 (6%), Positives = 36/130 (27%), Gaps = 3/130 (2%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                +   + +GL + + +  I        +S    +I   H      +  +     + 
Sbjct: 209 QVTQQLSTLLSSGLTIPEILDEISQ---GDEKSNRMTIILANHARQHFQKGYTIESYILK 265

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               +        +      L++ L+  ++        +      +++      I  ++ 
Sbjct: 266 QPYFNRSLAGYFSRGHEPKVLADYLSYYAKTQFQLLMQQTDRLIGTLQPLFFGVIGVAIV 325

Query: 138 FCVSTLVYFT 147
               +++   
Sbjct: 326 ILYMSMLLPM 335


>gi|254478244|ref|ZP_05091625.1| Bacterial type II secretion system protein F domain
           [Carboxydibrachium pacificum DSM 12653]
 gi|214035840|gb|EEB76533.1| Bacterial type II secretion system protein F domain
           [Carboxydibrachium pacificum DSM 12653]
          Length = 249

 Score = 38.9 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 48/145 (33%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            ++ P AL+I +  +  G+   + +  IV      VR            G SL +++   
Sbjct: 103 EEELPAALEIFISGLEVGMTAENIIGYIVRTRKGVVRDLLYEAQVRIDTGSSLKDALLSA 162

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                      F+  ++ + +   ++ E L  L   + ++   +   +A +++      I
Sbjct: 163 ADKSLNDHFKRFAKAVTGEYESVKDMRENLEELLEEVEEKNYNQKIKRAGTLDNSLFFPI 222

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIN 157
                  +  +        +    N
Sbjct: 223 FLGYFVPILIMFALPFVISLRSFFN 247


>gi|160902099|ref|YP_001567680.1| type II secretion system protein [Petrotoga mobilis SJ95]
 gi|160359743|gb|ABX31357.1| type II secretion system protein [Petrotoga mobilis SJ95]
          Length = 382

 Score = 38.9 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 55/173 (31%), Gaps = 11/173 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           +D   + +D +   V +GL + +A+  +V   Q    +R    +       GL    +  
Sbjct: 58  MDQMISLVDNLYLLVNSGLTLFEAMEFLVFNEQVDKFIRGVVFKGYFLVKKGLDYKTA-- 115

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
                    E+  +       S+    L E L+NL     + K  ++  +   +      
Sbjct: 116 -----FDFPEIDNYFRYTINISKTTLILRENLSNLKDYYNNVKLSRSTAEKSLIYPLLIL 170

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI--MVMRL 181
             I  L F ++  V       +   IN      +L     F   G+    +  
Sbjct: 171 SSILVLLFLLNFWVIPQFSTLLGYDINLNLSTYMLISMLIFFFFGLITFWIGK 223


>gi|289596991|ref|YP_003483687.1| Type II secretion system F domain protein [Aciduliprofundum boonei
           T469]
 gi|289534778|gb|ADD09125.1| Type II secretion system F domain protein [Aciduliprofundum boonei
           T469]
          Length = 554

 Score = 38.9 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/149 (10%), Positives = 48/149 (32%), Gaps = 2/149 (1%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH-LGL 63
           +KR  +        +  +       LP  +   ++   +    +  E  ++        L
Sbjct: 77  EKRKKEIERYMHLFITRMAVLASTRLPRKEIFRILSEVREYGALSDEVAKIYNLMEYWNL 136

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           SL ++   + +  P  E++ F   ++  +  G +    L     ++ +   +K +     
Sbjct: 137 SLPDATRIVAKKCPSVELADFLDRLAHSADAGEDFEVFLEKERTVVMETYAIKYEAALSQ 196

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
           M+     ++   +      +     P + 
Sbjct: 197 MDVYKETFVSMLISMLFFAVFVAILPMFT 225


>gi|56964272|ref|YP_176003.1| late competence protein ComGB [Bacillus clausii KSM-K16]
 gi|56910515|dbj|BAD65042.1| late competence protein ComGB [Bacillus clausii KSM-K16]
          Length = 345

 Score = 38.9 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 34/127 (26%), Gaps = 5/127 (3%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
            + R +  G+ +  A+ V  GQ       E  R      +   L    S +         
Sbjct: 217 QLGRLLETGMSLQQALNVFEGQDYLRFFKEEARW-----MNNELERGESFIAYIKEKPYY 271

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 I       G ++  L   S  L    + + +   + ++      I   +     
Sbjct: 272 LDELAAIVENGMRTGTIASDLQQYSEWLYQEMDDRLQKGVVWLQPVLLLAIGAFVFGLFL 331

Query: 142 TLVYFTS 148
            ++    
Sbjct: 332 VVMLPMF 338


>gi|295395524|ref|ZP_06805718.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971543|gb|EFG47424.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 217

 Score = 38.6 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 46/144 (31%), Gaps = 8/144 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +     LD++   +RAGLP+  A  +    + D         +      L+L    +   
Sbjct: 74  EQLAFDLDLVAICLRAGLPIPRAFELAARATQDRSG------LGRLGRSLALGSVDNAFA 127

Query: 74  RYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                         +       G  L+  L+ L+  +R  +  + ++ A  +       +
Sbjct: 128 GVQDPVGEHRTVVSLVEFSRSTGVALAPLLSGLASDMRRAERRRRQMAAAKLGVHLVIPL 187

Query: 133 -IGSLPFCVSTLVYFTSPGYMNVL 155
            +  LP  + T V       +  +
Sbjct: 188 GVCVLPSVILTGVVPVVITLVGDM 211


>gi|254167116|ref|ZP_04873969.1| Bacterial type II secretion system protein F domain
           [Aciduliprofundum boonei T469]
 gi|197623972|gb|EDY36534.1| Bacterial type II secretion system protein F domain
           [Aciduliprofundum boonei T469]
          Length = 550

 Score = 38.6 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/149 (10%), Positives = 47/149 (31%), Gaps = 2/149 (1%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH-LGL 63
           +KR  +        +  +       LP  +   ++   +    +  E  ++        L
Sbjct: 73  EKRKKEIERYMHLFITRMAVLASTRLPRKEIFRILSEVREYGALSDEVAKIYNLMEYWNL 132

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           SL ++   + +  P  E++     ++  +  G +    L     ++ +   +K +     
Sbjct: 133 SLPDATRIVAKKCPSVELADLLDRLAHSADAGEDFEVFLEKERTVVMETYAIKYEAALSQ 192

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
           M+     ++   +      +     P + 
Sbjct: 193 MDVYKETFVSMLISMLFFAVFVAILPMFT 221


>gi|145596549|ref|YP_001160846.1| hypothetical protein Strop_4038 [Salinispora tropica CNB-440]
 gi|145305886|gb|ABP56468.1| hypothetical protein Strop_4038 [Salinispora tropica CNB-440]
          Length = 331

 Score = 38.6 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 51/146 (34%), Gaps = 2/146 (1%)

Query: 41  VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSE 100
             Q       +   +      GLS+ +S +          +   +  ++   + G  L++
Sbjct: 183 ADQLRRRHLDQLCDLAADLRAGLSVGQSTALSAAGRSGSTLIRSAVRLA--DRTGAPLAD 240

Query: 101 ALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
            L  +    R     +A   A +  A+A+AW++ +LP     L Y      + VL++   
Sbjct: 241 LLERIDVDARAADRGRATAAAQAAGARATAWLLAALPLGGIGLGYGIGVDPVAVLLHSAV 300

Query: 161 GHMLLGVAAAFMLIGIMVMRLMINFD 186
           G     +A    + G+     +    
Sbjct: 301 GGSCAVLAVMLQVAGLFWAERLTAIR 326


>gi|55378880|ref|YP_136730.1| flagellar assembly protein J [Haloarcula marismortui ATCC 43049]
 gi|55231605|gb|AAV47024.1| flagella accessory protein J [Haloarcula marismortui ATCC 43049]
          Length = 582

 Score = 38.6 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 63/187 (33%), Gaps = 9/187 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           K L+ +R  +  + F   +  +       +   +    +  +     +  E  R+++   
Sbjct: 83  KILLSQRKRELNNRFHLLITHMTVLATTKIDRMEVFRTLAEEDEYGELAMEMHRIVQLVD 142

Query: 61  -LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
              LSL ++  R  + +P + VS F   ++     G  L + L      +    +   K 
Sbjct: 143 TWNLSLDDACRRRAKQVPSRAVSDFFDRLAYTLGAGQGLDDYLLTEQEQIIQHYSTVYKS 202

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI--GIM 177
              S+E     ++   L    + +     P    VL        +  V   F+ +  G  
Sbjct: 203 SLDSLEVMKDLYLSMILSMTFALVFAVVLP----VLTGTNPTMTVSAVIVMFVFVQTGFY 258

Query: 178 V-MRLMI 183
           + +R M 
Sbjct: 259 LAIRSMA 265


>gi|323702759|ref|ZP_08114419.1| stage III sporulation protein AB [Desulfotomaculum nigrificans DSM
           574]
 gi|323532276|gb|EGB22155.1| stage III sporulation protein AB [Desulfotomaculum nigrificans DSM
           574]
          Length = 172

 Score = 38.6 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 50/145 (34%), Gaps = 5/145 (3%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGL-PVSDAVAVIVGQSSDPVRSEFRRVIET---QHLG 62
           +R  +      NAL ++   +  G  P+ +A+A++  +    V   FRR  E        
Sbjct: 27  RRPGEI-RALRNALQMLETEISYGATPLPEALALVAERCDSRVAQLFRRASEELLTMRGV 85

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            +     + +  Y P   ++     I  +      +S+    +  ++  ++ ++ +    
Sbjct: 86  TAREAWETAIADYYPKSALNRCDRAILQELGNALGISDREDQVKHLVLTKEQLQMEQAKA 145

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFT 147
              +  +  +   L F     +   
Sbjct: 146 EDASARNTKVYNYLGFLGGLTIVLI 170


>gi|294501237|ref|YP_003564937.1| ComG operon protein [Bacillus megaterium QM B1551]
 gi|294351174|gb|ADE71503.1| ComG operon protein [Bacillus megaterium QM B1551]
          Length = 348

 Score = 38.6 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 59/154 (38%), Gaps = 7/154 (4%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           L  + + +  G  +S A++ +  Q S+  +++  + +E    G SL ++  ++       
Sbjct: 20  LKQVSKLLEKGYTLSQALSFLTFQVSNKEKTDIEKCLEQLKRGESLHDAFVKL------- 72

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
           +           ++  GNL  AL   S ++ ++   + K Q L          I S+ F 
Sbjct: 73  QFHRDILSYLYFAEQHGNLQFALKESSSMIEEKVRHRKKFQKLVQYPVLLLLFILSILFV 132

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           +ST++            N     +LL + A    
Sbjct: 133 LSTVLLPQFEALYLSFGNKQSSFILLFMQAMSFF 166


>gi|283779917|ref|YP_003370672.1| type II secretion system protein [Pirellula staleyi DSM 6068]
 gi|283438370|gb|ADB16812.1| type II secretion system protein [Pirellula staleyi DSM 6068]
          Length = 355

 Score = 38.6 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 41/129 (31%), Gaps = 5/129 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +      D I    RA LP+ DA+          + +  R V      G SL +++  + 
Sbjct: 12  EQLACLHDEIAAISRAKLPLGDALTAFGNDVPGKLGAAAREVGSRIASGESLEQAVGAVS 71

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
            + P        + +       G L  AL  ++ + R     +  V +  +      ++ 
Sbjct: 72  SHWPQ-----AYSAVVKIGVRVGRLPAALEAIADVSRTIVAARRAVLSAMIPPLFVFFLG 126

Query: 134 GSLPFCVST 142
             L      
Sbjct: 127 YGLLLFFIA 135


>gi|318606997|emb|CBY28495.1| general secretion pathway protein F [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 161

 Score = 38.6 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 6/105 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISR 71
             D       +   V A +P+ +A+A+I  Q +   V S   ++ +    G SLS+S+S+
Sbjct: 62  NRDLILITRQMSILVNAAIPLDEALALIENQSTKSKVDSVIHKIRKRVLEGHSLSDSLSQ 121

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
                     +     +    +L G+L   L+NL+  +   + +K
Sbjct: 122 FPAI-----FNSLYRSMIAAGELSGHLGLVLSNLADHIEQTRKVK 161


>gi|312875135|ref|ZP_07735150.1| type II secretion system F domain protein [Lactobacillus iners LEAF
           2053A-b]
 gi|311089341|gb|EFQ47770.1| type II secretion system F domain protein [Lactobacillus iners LEAF
           2053A-b]
          Length = 331

 Score = 38.6 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 58/161 (36%), Gaps = 16/161 (9%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            LD + +S+  G   + ++ ++       V +E   +I+     ++       + + +  
Sbjct: 19  FLDYLQQSLNNGFSFNQSLKIL-----PHVWNEKVNIIQKLSSNIAQGN---DIGQSLVA 70

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
              S         +   GNL E+L+ L++I+R +     K+++             ++  
Sbjct: 71  IGFSRTIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIKSEMAYP--------AVLI 122

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            +   +      +++  ++          A    L+GI  +
Sbjct: 123 VMMVSLLIAMQTFLHSELSSDSSSSDFIFAIIVSLLGIFFI 163


>gi|167769280|ref|ZP_02441333.1| hypothetical protein ANACOL_00603 [Anaerotruncus colihominis DSM
           17241]
 gi|167668248|gb|EDS12378.1| hypothetical protein ANACOL_00603 [Anaerotruncus colihominis DSM
           17241]
          Length = 290

 Score = 38.6 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 49/150 (32%), Gaps = 2/150 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           +  +   + P  +  I + + A   V   +     Q+S PV S    V+       S   
Sbjct: 141 KRDEIEAELPRFVATITQELAASRDVLSMIEH-YKQNSGPVFSAELDVLTADMRSGSYEA 199

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +++R         +S     +    +    +      LS  ++  +  + K +A+ +  K
Sbjct: 200 ALTRFEARFNSPLLSDIVRGLIGVLRGDNGVH-YFQMLSHDMKQLELQRLKAKAMKIPPK 258

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
              +    L   + T +       ++ L  
Sbjct: 259 IRVFSFVLLMCFLVTYLSIIIYEIIHSLGG 288


>gi|323140863|ref|ZP_08075776.1| bacterial type II secretion system protein F domain
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414601|gb|EFY05407.1| bacterial type II secretion system protein F domain
           [Phascolarctobacterium sp. YIT 12067]
          Length = 346

 Score = 38.6 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 46/143 (32%), Gaps = 5/143 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   +R+GLP+ +A+ ++    S        R+ +    G SL+++++        
Sbjct: 17  FYRQLAVILRSGLPLLNALQLLQKHGSAKQMLLCYRLQQRLRRGSSLAQALAAEADCC-- 74

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
              +  +  +    +  G L+  L  L+     +  ++  VQ               +  
Sbjct: 75  ---TQLAVTLVAVGEESGELATLLEQLADYYSRQLKLRRFVQRAVTYPAFLLLASFCVLL 131

Query: 139 CVSTLVYFTSPGYMNVLINDPRG 161
                +        + +   P G
Sbjct: 132 LFLLYILPVLADTYSAMGVLPMG 154


>gi|309806178|ref|ZP_07700194.1| type II secretion system F domain protein [Lactobacillus iners
           LactinV 03V1-b]
 gi|308167397|gb|EFO69560.1| type II secretion system F domain protein [Lactobacillus iners
           LactinV 03V1-b]
          Length = 331

 Score = 38.6 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 58/161 (36%), Gaps = 16/161 (9%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            LD + +S+  G   + ++ ++       V +E   +I+     ++       + + +  
Sbjct: 19  FLDYLQQSLNNGFSFNQSLKIL-----PHVWNEKVNIIKKLSSNIAQGN---DIGQSLVA 70

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
              S         +   GNL E+L+ L++I+R +     K+++             ++  
Sbjct: 71  IGFSRTIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIKSEMAYP--------AVLI 122

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            +   +      +++  ++          A    L+GI  +
Sbjct: 123 VMMVSLLIAMQTFLHSELSSDSSSSDFIFAIIVSLLGIFFI 163


>gi|228982433|ref|ZP_04142692.1| hypothetical protein bthur0002_55660 [Bacillus thuringiensis Bt407]
 gi|228776616|gb|EEM24924.1| hypothetical protein bthur0002_55660 [Bacillus thuringiensis Bt407]
          Length = 274

 Score = 38.6 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 57/146 (39%), Gaps = 4/146 (2%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
             K L  FP+ + I    + A +  + AV   +    D  R   +  I    +  S+ ++
Sbjct: 127 KEKLLGGFPDFIRITRGYLTADISFTKAVEGSIPYVGDAWRPLLQEFIVNCDIH-SVEKA 185

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           I ++   + +  V    +++ +  + G ++ E+       +   + M+ +     +  + 
Sbjct: 186 IDKLKDQVDVFAVKELLSLVRLNLEQGVDVRESFER---QIDKVREMQLEAIMNRIAKRQ 242

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNV 154
              ++   P  ++ +  F  P + ++
Sbjct: 243 LLAMVLQGPLLLTLIGAFGLPTFYSM 268


>gi|295706584|ref|YP_003599659.1| ComG operon protein [Bacillus megaterium DSM 319]
 gi|294804243|gb|ADF41309.1| ComG operon protein [Bacillus megaterium DSM 319]
          Length = 348

 Score = 38.6 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 59/154 (38%), Gaps = 7/154 (4%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           L  + + +  G  +S A++ +  Q S+  +++  + +E    G SL ++  ++       
Sbjct: 20  LKQVSKLLEKGYTLSQALSFLTFQVSNKEKTDIEKCLEQLKRGESLHDAFVKL------- 72

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
           +           ++  GNL  AL   S ++ ++   + K Q L          I S+ F 
Sbjct: 73  QFHRDILSYLYFAEQHGNLQFALKESSSMIEEKVRHRKKFQKLVQYPVLLLLFILSILFV 132

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           +ST++            N     +LL + A    
Sbjct: 133 LSTVLLPQFEALYLSFGNKQSSFILLFMQAMSFF 166


>gi|259501490|ref|ZP_05744392.1| competence protein [Lactobacillus iners DSM 13335]
 gi|302191536|ref|ZP_07267790.1| Type II secretory pathway/competence component [Lactobacillus iners
           AB-1]
 gi|312871496|ref|ZP_07731590.1| type II secretion system F domain protein [Lactobacillus iners LEAF
           3008A-a]
 gi|325913082|ref|ZP_08175453.1| type II secretion system protein F domain protein [Lactobacillus
           iners UPII 60-B]
 gi|259167008|gb|EEW51503.1| competence protein [Lactobacillus iners DSM 13335]
 gi|311093016|gb|EFQ51366.1| type II secretion system F domain protein [Lactobacillus iners LEAF
           3008A-a]
 gi|325477638|gb|EGC80779.1| type II secretion system protein F domain protein [Lactobacillus
           iners UPII 60-B]
          Length = 331

 Score = 38.6 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 58/161 (36%), Gaps = 16/161 (9%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            LD + +S+  G   + ++ ++       V +E   +I+     ++       + + +  
Sbjct: 19  FLDYLQQSLNNGFSFNQSLKIL-----PHVWNEKVNIIKKLSSNIAQGN---DIGQSLVA 70

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
              S         +   GNL E+L+ L++I+R +     K+++             ++  
Sbjct: 71  IGFSRMIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIKSEMAYP--------AVLI 122

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            +   +      +++  ++          A    L+GI  +
Sbjct: 123 VMMVSLLIAMQTFLHSELSSDSSSSDFIFAIIISLLGIFFI 163


>gi|15606501|ref|NP_213881.1| fimbrial assembly protein PilC2 [Aquifex aeolicus VF5]
 gi|2983710|gb|AAC07273.1| fimbrial assembly protein PilC2 [Aquifex aeolicus VF5]
          Length = 394

 Score = 38.6 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 10/145 (6%)

Query: 30  GLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVI 88
           G+P++ A+ ++  Q+ +  +++ F +V E    G SL+E+  R            F T +
Sbjct: 76  GIPLTRALELVSSQTENENLKNAFFQVKEYVEKGYSLAEAFKRTG------VFPEFLTEM 129

Query: 89  SVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
               Q G NL          L+     K KV           ++I      +   V F  
Sbjct: 130 LTGVQRGENLEYVFQVAGEYLQKVAEFKNKVITSITYPA---FVITFSFLSLFVAVKFVV 186

Query: 149 PGYMNVLINDPRGHMLLGVAAAFML 173
           P    VL    +   L+        
Sbjct: 187 PRIAKVLEGFGKELPLITKLVILFS 211



 Score = 37.4 bits (85), Expect = 0.90,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 48/141 (34%), Gaps = 7/141 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           +       +   + A +P+S A+++ V   S+  +R +   ++     G S S       
Sbjct: 258 NLSRFSRTLSMLLEASVPLSTALSIAVKSVSNVYLRKKLESLVSEVEKGKSFS------A 311

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                  +      +    ++ G L + L  L+++   + +         +E  A   I 
Sbjct: 312 LLSRENVLPELFVNLVETGEVSGELEKTLNLLAQVYEKQSDRLISFWLRLVEPLAILVIG 371

Query: 134 GSLPFCVSTLVYFTSPGYMNV 154
            ++     +++   +   M  
Sbjct: 372 ITVGIIAFSVILPLTEISMGF 392


>gi|254381325|ref|ZP_04996690.1| integral membrane protein [Streptomyces sp. Mg1]
 gi|194340235|gb|EDX21201.1| integral membrane protein [Streptomyces sp. Mg1]
          Length = 293

 Score = 38.6 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 43/114 (37%), Gaps = 3/114 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAG-LPVSDAVAVIVGQSSDPVR-SEFRRVIET 58
           ++   K+  A+F       LD++    RAG +    A+                  +  +
Sbjct: 139 LRDKAKRARAEFAHAMAAYLDLVA-LRRAGNVSAEQAMEQAAQVGRGWAFLRIQTALARS 197

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112
           +   +   ES++R+   + L  +   + ++   +  G ++   L + ++ LR  
Sbjct: 198 RVDKVPHWESLTRLTAELDLPVLDDLAAIMRQSADDGASVYATLRSRAKNLRTE 251


>gi|110667294|ref|YP_657105.1| type II secretion system, transmembrane protein TadC [Haloquadratum
           walsbyi DSM 16790]
 gi|109625041|emb|CAJ51457.1| type II secretion system, transmembrane protein TadC [Haloquadratum
           walsbyi DSM 16790]
          Length = 645

 Score = 38.6 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 63/186 (33%), Gaps = 10/186 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ 59
           ++ +   R A      P+A+  +             +  +    +     +  R V+ T 
Sbjct: 147 LRWVTTARRAAIDRTLPSAVRYLNVLSSGSDNRRAMLRRVADTDAYGETATSIRTVLNTA 206

Query: 60  HLGLSLSESISRMVRYMPLQEV--SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
            +  +++E + R+ R  P QE    F         Q    L   L+  SR+LR R++ + 
Sbjct: 207 AMTGNINEGLRRVARDTPAQETLGPFLLKFREHADQGEDALGNYLSMESRMLRYRQDSER 266

Query: 118 KVQALSME-------AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           +     +E              +  +   V +L+       +  ++       ++   +A
Sbjct: 267 QRAQGFLELLAELFVVLLVLPALVVIIITVMSLLSPGLAAPIQTIVGVVTIQEVIVYGSA 326

Query: 171 FMLIGI 176
             ++ +
Sbjct: 327 VFILAV 332


>gi|330719879|gb|EGG98361.1| MSHA biogenesis protein MshG [gamma proteobacterium IMCC2047]
          Length = 151

 Score = 38.6 bits (88), Expect = 0.44,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 39/134 (29%), Gaps = 7/134 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +             AG+P+  A+ V+     +  V     ++  +   G S S + +   
Sbjct: 16  NLGRFARTYATVTNAGVPIIQALKVVANAVGNAYVADRIAKMSSSIERGESFSRTATNSG 75

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
            + P          +    +  GN+ E L  ++       +   K     +E      + 
Sbjct: 76  LFSP------LVLQMIAVGEETGNMDELLDEVADFYEQEVDYDLKKLGDRIEPILLIVVA 129

Query: 134 GSLPFCVSTLVYFT 147
           G +      +    
Sbjct: 130 GMVLILALGVFLPM 143


>gi|302329928|gb|ADL20122.1| Putative type II secretion system protein [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275612|gb|ADO25511.1| Putative type II secretion system protein [Corynebacterium
           pseudotuberculosis I19]
          Length = 217

 Score = 38.6 bits (88), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 8/129 (6%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSE---FRRVIETQHLGLSLSESISRMVR 74
           LD+    V++GL  S +   +    +SS         +  V     +G+    +   +  
Sbjct: 77  LDLFAACVQSGLTPSQSAFAVAATEESSPRDARVRSGWLEVAMMLEMGMPAERAWQSLAE 136

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                 +    TV     + G  L+EA   L+R LR R +  +  +A       +  +  
Sbjct: 137 ---HPALGDLVTVARASERSGATLAEACERLARQLRARASDLSLARAERAGVLIALPLTV 193

Query: 135 SLPFCVSTL 143
                   L
Sbjct: 194 CFLPAFFLL 202


>gi|291460201|ref|ZP_06599591.1| putative type II secretion system protein F [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291417148|gb|EFE90867.1| putative type II secretion system protein F [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 483

 Score = 38.6 bits (88), Expect = 0.44,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 11/138 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS---------- 50
           ++   KKR    L D+ + +  ++  + AGL + +A   I        R           
Sbjct: 319 LRERAKKRELSLLLDYSDLVSKLLLYLGAGLSLRNAFEKISEHYEALPREGPGEERALSG 378

Query: 51  EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRIL 109
           E R ++      +S SE+     R + L+  +    +I   +     NL EAL       
Sbjct: 379 ELRTMLLQLKSNVSESEAYRSFARRISLKPYARLIALIEQKRRNGSRNLREALKLEMEDA 438

Query: 110 RDRKNMKAKVQALSMEAK 127
            + +   AK        K
Sbjct: 439 FECRKNTAKRLGEEASTK 456


>gi|329919944|ref|ZP_08276846.1| type II secretion system protein F domain protein [Lactobacillus
           iners SPIN 1401G]
 gi|328936831|gb|EGG33267.1| type II secretion system protein F domain protein [Lactobacillus
           iners SPIN 1401G]
          Length = 331

 Score = 38.6 bits (88), Expect = 0.45,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 58/161 (36%), Gaps = 16/161 (9%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            LD + +S+  G   + ++ ++       V +E   +I+     ++       + + +  
Sbjct: 19  FLDYLQQSLNNGFSFNQSLKIL-----PHVWNEKVNIIKKLSSNIAQGN---DIGQSLVA 70

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
              S         +   GNL E+L+ L++I+R +     K+++             ++  
Sbjct: 71  IGFSRMIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIKSEMAYP--------AVLI 122

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            +   +      +++  ++          A    L+GI  +
Sbjct: 123 VMMVSLLIAMQTFLHSELSSDSSSSDFIFAIIISLLGIFFI 163


>gi|327539154|gb|EGF25783.1| general secretion pathway protein F-putative pilus protein
           [Rhodopirellula baltica WH47]
          Length = 341

 Score = 38.6 bits (88), Expect = 0.45,   Method: Composition-based stats.
 Identities = 19/175 (10%), Positives = 46/175 (26%), Gaps = 16/175 (9%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           +        + AG  +   +       S   R    ++ E    G ++SE          
Sbjct: 8   DFCRRFGVGLGAGADLLKLLESEAKHGSAQQRVAMTKIREGAKDGHAISEM-----MRHQ 62

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                    V++   +  G L   +  LS     +  ++               I   + 
Sbjct: 63  KPFFPPLMVVMTRVGETTGKLERTMLALSEHYAQQYTLRQNFLRAIAWPGLQLLIGIGVV 122

Query: 138 FCVSTLVYFTSP-------GYMNVLINDPRGHML----LGVAAAFMLIGIMVMRL 181
             +  ++   +          +   +  P+G ++    + V  A        +R 
Sbjct: 123 SLMIWIMGVLTAPTGGQMTDMLGFGLRGPKGVLIFWSYIAVVVAVFGGIYFAVRK 177


>gi|11498653|ref|NP_069881.1| flagellar assembly protein J [Archaeoglobus fulgidus DSM 4304]
 gi|2649538|gb|AAB90189.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 541

 Score = 38.6 bits (88), Expect = 0.45,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 57/165 (34%), Gaps = 4/165 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDII-VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           +  +  ++ +K  + F   +  +      AG+ V++A++ I  ++   +R    ++    
Sbjct: 283 LARIDDQKISKRDEAFTAFIRSLGAIKSGAGVSVAEALSRIDQKNLGELRELVMQLYRRL 342

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            +GL    S  R V       +S  + +    + LGG+       +S    +   ++ K 
Sbjct: 343 SMGLDAKLSWERFVGESGSYLISKLTAIFVDATDLGGDADVVGEIVSSSNLEMVLLRLKR 402

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVY---FTSPGYMNVLINDPRG 161
             +S         +      +   +         Y++ L     G
Sbjct: 403 DLISSGFINLIIPLHLAMVGLVLFITQILAIFSDYISNLFASQLG 447



 Score = 34.7 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 17/170 (10%), Positives = 48/170 (28%), Gaps = 7/170 (4%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESIS 70
             +D    L  +     A L       ++  +        F +V + TQ      + +  
Sbjct: 34  MDNDLLFTLTYMASLSTANLSRDKIFEMVSEKKEYAPSRYFSKVKDLTQKWHYDYATACD 93

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN------LSRILRDRKNMKAKVQALSM 124
            +   +  + +      ++     G   +E L          R     +N+++  +    
Sbjct: 94  LIAEKIKHERLKKLFNRMANAIAAGEPDNEFLEREWRAFKTIRKDEYERNLESLRKWSDA 153

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
                          + +++ +++      L      +  + +   FML 
Sbjct: 154 YTSLLVSASLISVVVLLSVIIYSAGDPGATLTASAFANFAISLFGVFMLF 203


>gi|326202875|ref|ZP_08192742.1| hypothetical protein Cpap_2184 [Clostridium papyrosolvens DSM 2782]
 gi|325986952|gb|EGD47781.1| hypothetical protein Cpap_2184 [Clostridium papyrosolvens DSM 2782]
          Length = 319

 Score = 38.6 bits (88), Expect = 0.45,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 65/183 (35%), Gaps = 12/183 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++ IK+R        P+ +D    S  +   +  A+      ++  +     RV ++  
Sbjct: 148 LRYSIKQRI-------PSFIDSFRSSFVSQNRIKPALQECCSNANKHLARIMLRVSDSSD 200

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +  SL     R+         + F T++    + GG L   L  L++ +    N++ K  
Sbjct: 201 INDSLCAVRGRINDIW----FNIFVTLLINYRENGGELINQLYKLNKTITRYNNIEKKKN 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY-FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
              +  +            V  L+        M +  N  +    + + +   LI + V+
Sbjct: 257 RRLIWYEFFTLGASIFSLPVIMLINRMILGANMRLYYNTAQAAGKIAIYSLSALIIVRVL 316

Query: 180 RLM 182
           R +
Sbjct: 317 RRL 319


>gi|120555558|ref|YP_959909.1| type II secretion system protein [Marinobacter aquaeolei VT8]
 gi|120325407|gb|ABM19722.1| type II secretion system protein [Marinobacter aquaeolei VT8]
          Length = 398

 Score = 38.6 bits (88), Expect = 0.45,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 58/156 (37%), Gaps = 10/156 (6%)

Query: 28  RAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87
           R+G+ + DA+  +   +     +  + V +    GL   ES S  +R   +    +    
Sbjct: 74  RSGVSLKDAIDSL---TGGERAAAMQSVFDRWSSGLRQGESFSDALRASGVPVPEYLF-Q 129

Query: 88  ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           +    +L G + ++L      +   K +  +++   +       +  S    V  +  F 
Sbjct: 130 LVKAGELTGEMGDSLQTAVSQMEYEKQIATEMKNALVYPA---ILCFSGVGAVLLVFTFV 186

Query: 148 SPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            P + N+L +   G  L  +A A +  G  V   M 
Sbjct: 187 VPQFQNLLEH---GDKLPWLAWAVLATGKWVNANMA 219


>gi|89897875|ref|YP_514985.1| general secretion pathway protein F [Chlamydophila felis Fe/C-56]
 gi|89331247|dbj|BAE80840.1| general secretion pathway protein F [Chlamydophila felis Fe/C-56]
          Length = 391

 Score = 38.6 bits (88), Expect = 0.46,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 62/169 (36%), Gaps = 6/169 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQ 59
           ++ +  +R     ++       ++  +R+GLP+ ++++ +  Q      S      +E  
Sbjct: 42  IREVAPRRVRVKNNELIVFSKQMLLLLRSGLPLYESLSSLRDQYQGQAMSGLLTAFMENL 101

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G +LS++++             F     +  +  GNL   L N+  +L +R+ M  K+
Sbjct: 102 RSGGALSQAMAAYPDI-----FDNFYRSAILAGESVGNLEGCLQNIIVVLEEREQMSKKL 156

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168
            A             ++     T V  +       +  +    ++  ++
Sbjct: 157 TAALSYPIVLLVFSLAVVLFFLTGVIPSLKETFENMEPNTLTSIVFSLS 205


>gi|163841487|ref|YP_001625892.1| hypothetical protein RSal33209_2753 [Renibacterium salmoninarum
           ATCC 33209]
 gi|162954963|gb|ABY24478.1| hypothetical protein RSal33209_2753 [Renibacterium salmoninarum
           ATCC 33209]
          Length = 246

 Score = 38.6 bits (88), Expect = 0.47,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 55/177 (31%), Gaps = 8/177 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI----- 69
           +       ++  +R+G     A+      + +                L LS S      
Sbjct: 65  EIAVLTRRVIALLRSGCH-EQALWRAARDAGESSNLWPALAKAAALAELGLSPSAAFRPV 123

Query: 70  --SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
               +      + +   +  + V  Q G  L E L   +    D  +M+A         K
Sbjct: 124 PNKSLSNNPSQRALVELAACLEVAEQSGAQLVEVLDRAAEHFDDSIDMQALRNTALAGPK 183

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           A+A ++  LP       Y      +++L   P G++ L       L+  + M  +  
Sbjct: 184 ATASLLSWLPLLGLGAGYLMGISPISILFGTPAGNLALLAGGTLTLLARLWMSWLAK 240


>gi|309808611|ref|ZP_07702503.1| type II secretion system F domain protein [Lactobacillus iners
           LactinV 01V1-a]
 gi|308168085|gb|EFO70211.1| type II secretion system F domain protein [Lactobacillus iners
           LactinV 01V1-a]
          Length = 332

 Score = 38.6 bits (88), Expect = 0.47,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 58/161 (36%), Gaps = 16/161 (9%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            LD + +S+  G   + ++ ++       V +E   +I+     ++       + + +  
Sbjct: 20  FLDYLQQSLNNGFSFNQSLKIL-----PHVWNEKVNIIQKLSSNIAQGN---DIGQSLVA 71

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
              S         +   GNL E+L+ L++I+R +     K+++             ++  
Sbjct: 72  IGFSRTIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIKSEMAYP--------AVLI 123

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            +   +      +++  ++          A    L+GI  +
Sbjct: 124 VMMVSLLIAMQTFLHSELSSDSSSSDFIFAIIVSLLGIFFI 164


>gi|300790607|ref|YP_003770898.1| hypothetical protein AMED_8803 [Amycolatopsis mediterranei U32]
 gi|299800121|gb|ADJ50496.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
          Length = 238

 Score = 38.2 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 41/131 (31%), Gaps = 3/131 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
               LD++   +RAGLPV  A+  + G +     +          LG    E+       
Sbjct: 97  LAGTLDLLAACLRAGLPVPSALEAVAGSAPAAASTALSSTAGLLALGSPPHEAW---APV 153

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                +   +      S+ G   + A  +L+   RD    +A+ +A       +  +   
Sbjct: 154 QAAPGLGELAAAAIRTSRSGAAFAAAAGDLAGRFRDELATEAEERAERAGVALALPVGLC 213

Query: 136 LPFCVSTLVYF 146
                  L   
Sbjct: 214 FLPAFFCLGVL 224


>gi|22297663|ref|NP_680910.1| putatiave fimbrial assembly protein [Thermosynechococcus elongatus
           BP-1]
 gi|22293840|dbj|BAC07672.1| pilC [Thermosynechococcus elongatus BP-1]
          Length = 233

 Score = 38.2 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 44/134 (32%), Gaps = 7/134 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                    R+G+P+  ++ ++   + +  + +   R  +    G  LS ++ +      
Sbjct: 102 FCRTFGSLSRSGVPILRSLEIVSATAGNQVISNAIDRAAKEVQTGGMLSLALQK------ 155

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +     +T +    +  G L + L  ++    D      K     ME    A + G + 
Sbjct: 156 ERVFPVLATQMINVGEETGELDKMLMKVADFYEDEVEQAVKSLTSVMEPLMIAVLGGMVG 215

Query: 138 FCVSTLVYFTSPGY 151
             +  +       +
Sbjct: 216 SILVAMYLPMFKIF 229


>gi|73671137|ref|YP_307152.1| hypothetical protein Mbar_A3709 [Methanosarcina barkeri str.
           Fusaro]
 gi|72398299|gb|AAZ72572.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 646

 Score = 38.2 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 15/162 (9%), Positives = 48/162 (29%), Gaps = 7/162 (4%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
             I+ R  K   +F ++L ++ R +  G    +A A            E  + I    L 
Sbjct: 390 KKIRDRIKKMEQEFADSLFVLGRRISEGKAPEEAFAHTARTMEGSKIGEAFQEISMNLLS 449

Query: 63  LS-------LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           +          E           +  +          +       ++  L+  L++   +
Sbjct: 450 MRTNLKAAIFDEDFGAFRHVYSERIRNTMLLFTESVHKNHEAAGASIIKLADHLKELGTV 509

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + +++    +  ++      +   +   +       +  +++
Sbjct: 510 EERIRRSLYDVTSTMRSTAVIFAPLIAGITLALSEVITKILS 551


>gi|284173203|ref|ZP_06387172.1| hypothetical protein Ssol98_00900 [Sulfolobus solfataricus 98/2]
 gi|261601170|gb|ACX90773.1| Type II secretion system F domain protein [Sulfolobus solfataricus
           98/2]
          Length = 658

 Score = 38.2 bits (87), Expect = 0.50,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 54/177 (30%), Gaps = 3/177 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +      +  P  L  I    + G  +S A+  +  +     R EF RV+       S+ 
Sbjct: 428 REINDVENSLPQFLRDITEFRKIGYDLSRAIKTLAEE--KRYRREFNRVLNEITKQDSMG 485

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
             I+R           F  T + +  + G    + L  L+    +    K +  +     
Sbjct: 486 IPITRAKINTRSWLGKFSLTTVQILIESGAVRPDLLEYLTEFTLNFIQSKKEAFSRMRAY 545

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGY-MNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           +    +   L      +       + +  L  +  G        +  ++  +++  M
Sbjct: 546 QVLGILTPLLLIATILIAIVIIDSFTIVTLPTNTVGLPQFPNIISQFILSPVILAEM 602


>gi|226325871|ref|ZP_03801389.1| hypothetical protein COPCOM_03684 [Coprococcus comes ATCC 27758]
 gi|225205995|gb|EEG88349.1| hypothetical protein COPCOM_03684 [Coprococcus comes ATCC 27758]
          Length = 281

 Score = 38.2 bits (87), Expect = 0.50,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 38/136 (27%), Gaps = 10/136 (7%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---------SDPVRSEF 52
            +  K R  + + D+P  +        AG+   +    I                   E 
Sbjct: 120 NNQKKTRKEQMMLDYPEIITEFTMLTGAGMTAKNVWKRIAEDYGITRGKTGRKREAYEEI 179

Query: 53  RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRD 111
            +  +    G+   E   R  R   L        ++S    +    +SE L   +    +
Sbjct: 180 WKTWQEMKSGIPEMECYERFARRCDLIPYMKMGALLSQNLKKGAKGISEMLRMEAVQALE 239

Query: 112 RKNMKAKVQALSMEAK 127
            +  +A+        +
Sbjct: 240 DRKSRARQLGEEAGTR 255


>gi|296109004|ref|YP_003615953.1| Type II secretion system F domain protein [Methanocaldococcus
           infernus ME]
 gi|295433818|gb|ADG12989.1| Type II secretion system F domain protein [Methanocaldococcus
           infernus ME]
          Length = 345

 Score = 38.2 bits (87), Expect = 0.51,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 57/173 (32%), Gaps = 4/173 (2%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSE 67
             +        L  +   ++AG  + + +  +   +    +  E   +I   + G++  +
Sbjct: 169 KGEIKLQILLGLLYMTSLLKAGASLPEILTGLARSREYGVLSYEAALIIRDINSGMTFED 228

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME-- 125
           ++ R +    +  +      + +     GNLS  L  L   +      K       ++  
Sbjct: 229 ALRRAIIRTTIPLLRKVFDQMII-GYNKGNLSLLLEKLYEEIVRESLSKLDTSKFMIQNL 287

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
              +  +   +PF    +    S    + ++N     ML       ++ G+ V
Sbjct: 288 GNLAFGVGLIMPFSGLIMSAMISNQGFSGILNAVNFLMLNLGPILAIIFGVFV 340


>gi|239929827|ref|ZP_04686780.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
          Length = 263

 Score = 38.2 bits (87), Expect = 0.51,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 18/59 (30%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
             P A D++   + AG     A   +      PV     R      LG     +  R+ 
Sbjct: 120 QLPLAADLLSACIAAGAGPVTAAQAVGEALGGPVGEALARGAAEVRLGGEPDAAWQRLA 178


>gi|223935104|ref|ZP_03627022.1| type II secretion system protein [bacterium Ellin514]
 gi|223895988|gb|EEF62431.1| type II secretion system protein [bacterium Ellin514]
          Length = 334

 Score = 38.2 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 52/154 (33%), Gaps = 10/154 (6%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
            I + V +G+ +  A+ +I         R    RV+E  + G + ++++           
Sbjct: 19  QIAQLVASGIGLISALQLIQRNPPSTAFRKHIERVLEHLNHGSTFTDAMRATG-----SW 73

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
           +  F   +   ++  G L      L     D   ++ ++ +          +       +
Sbjct: 74  LPSFDVYLIEAAENSGRLDSVFKMLGDYYADTARLQKQMLSDLAYPALVLHMA----VFL 129

Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
             L+ +   G   + +    G ++   A  F L+
Sbjct: 130 FPLIDYFKNGSGALFLIKTAGVIVPLYAIIFGLL 163


>gi|225387976|ref|ZP_03757700.1| hypothetical protein CLOSTASPAR_01708 [Clostridium asparagiforme
           DSM 15981]
 gi|225045958|gb|EEG56204.1| hypothetical protein CLOSTASPAR_01708 [Clostridium asparagiforme
           DSM 15981]
          Length = 351

 Score = 38.2 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 17/160 (10%), Positives = 44/160 (27%), Gaps = 7/160 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            +       I   + A +P+ + +A++   +      +    +            +    
Sbjct: 13  QELSAFCLQIGLLLEAAVPLDEGLAIMAEDAGCEDEKQLLLYMAEGAELGDPFFKVLEDA 72

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
              PL     +   ++   Q  G L + + +LS        +   V+           ++
Sbjct: 73  GTFPL-----YVVRMAKLGQQSGTLDQMMKSLSDYYEKEYRLLVNVKNALTYPIMMVVML 127

Query: 134 GSLPFCVSTLVYFTSPGYMNVLIN--DPRGHMLLGVAAAF 171
             + F + + V          L     P     + +   F
Sbjct: 128 LVVLFVLFSKVMPVFDQVYEQLGAKMSPAARSAIRLGGLF 167


>gi|229174918|ref|ZP_04302438.1| ComG operon protein 2 [Bacillus cereus MM3]
 gi|228608586|gb|EEK65888.1| ComG operon protein 2 [Bacillus cereus MM3]
          Length = 315

 Score = 38.2 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 44/132 (33%), Gaps = 7/132 (5%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
                +   ++ GL V +A+ ++V Q      + E  R+      G  L   I++     
Sbjct: 184 YFAAQLSGLLQGGLSVLEALTIMVEQHYHPFFQYEAGRIERQLIAGEPLQSIIAKSG--- 240

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
                    + I    Q  GNL+  L + S  +  +   K K   + ++      I G +
Sbjct: 241 ---YYEKELSYIITHGQANGNLAIELGDYSDHIMGKMEQKVKRMLVIIQPILFTCIGGIV 297

Query: 137 PFCVSTLVYFTS 148
                 ++    
Sbjct: 298 VLMYLAMIMPMF 309


>gi|20090162|ref|NP_616237.1| hypothetical protein MA1298 [Methanosarcina acetivorans C2A]
 gi|19915147|gb|AAM04717.1| predicted protein [Methanosarcina acetivorans C2A]
          Length = 645

 Score = 38.2 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/162 (8%), Positives = 47/162 (29%), Gaps = 7/162 (4%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-------V 55
             I+ R  +   +F ++L ++ R +  G    +A A            E           
Sbjct: 389 KKIRDRIKQMELEFADSLFVLGRRISEGKAPEEAFAHTSRTMEGSKIGEAFEEISMNLFS 448

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           + T        E           +  +          +       ++  L+  L++   +
Sbjct: 449 MRTNLRDAIFDEEFGAFRHIYSERIRNTMLLFTESVHKNHEAAGASIIKLADHLKELSAV 508

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + +++    +  ++     ++   +   +       +  ++N
Sbjct: 509 EERIRRSLYDVTSTMRSTAAIFAPLIAGITLALSEVITKILN 550


>gi|331694288|ref|YP_004330527.1| Type II secretion system F domain-containing protein
           [Pseudonocardia dioxanivorans CB1190]
 gi|326948977|gb|AEA22674.1| Type II secretion system F domain protein [Pseudonocardia
           dioxanivorans CB1190]
          Length = 269

 Score = 38.2 bits (87), Expect = 0.56,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 58/170 (34%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           +   AL  I   +RAG     A+A I    +    +    +   +      +        
Sbjct: 95  ELAEALARICDELRAGAHPGAALAGIDADGAAARAALRPALGAAELGETVPTALARAAAP 154

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                +V   +   ++  + G  L+  LA ++  LR R     +V+A     +A+A ++ 
Sbjct: 155 AGLAADVDRVTAAWTLSDRHGVPLATVLAAVAADLRWRVEFGNRVRAELAGPRATATVLT 214

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            LP              + VL +   G +LLG        G+     ++ 
Sbjct: 215 LLPLLGLAFGQLMGADPLGVLRDGLLGTLLLGCGTLLTAAGVAWSEHILR 264


>gi|15899402|ref|NP_344007.1| hypothetical protein SSO2679 [Sulfolobus solfataricus P2]
 gi|13816000|gb|AAK42797.1| Hypothetical protein SSO2679 [Sulfolobus solfataricus P2]
          Length = 662

 Score = 38.2 bits (87), Expect = 0.56,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 54/177 (30%), Gaps = 3/177 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +      +  P  L  I    + G  +S A+  +  +     R EF RV+       S+ 
Sbjct: 432 REINDVENSLPQFLRDITEFRKIGYDLSRAIKTLAEE--KRYRREFNRVLNEITKQDSMG 489

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
             I+R           F  T + +  + G    + L  L+    +    K +  +     
Sbjct: 490 IPITRAKINTRSWLGKFSLTTVQILIESGAVRPDLLEYLTEFTLNFIQSKKEAFSRMRAY 549

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGY-MNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           +    +   L      +       + +  L  +  G        +  ++  +++  M
Sbjct: 550 QVLGILTPLLLIATILIAIVIIDSFTIVTLPTNTVGLPQFPNIISQFILSPVILAEM 606


>gi|226325873|ref|ZP_03801391.1| hypothetical protein COPCOM_03686 [Coprococcus comes ATCC 27758]
 gi|225205997|gb|EEG88351.1| hypothetical protein COPCOM_03686 [Coprococcus comes ATCC 27758]
          Length = 55

 Score = 38.2 bits (87), Expect = 0.57,   Method: Composition-based stats.
 Identities = 6/55 (10%), Positives = 21/55 (38%)

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           +  +P  +   +  + P +M  L  +  G + + +     +    +   ++  +V
Sbjct: 1   MSVIPLGIIGYMRLSFPEFMAGLYGNLPGAVFMSICLGAYIAAWRLGCKIVEIEV 55


>gi|66476351|gb|AAY51449.1| pilin biogenesis protein [Microcystis aeruginosa PCC 7806]
 gi|159026048|emb|CAO86289.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 404

 Score = 38.2 bits (87), Expect = 0.57,   Method: Composition-based stats.
 Identities = 11/133 (8%), Positives = 38/133 (28%), Gaps = 5/133 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
              +     R+G+P+ +++ ++     + V +      + +     +     +     P 
Sbjct: 273 FCRVFGTLTRSGVPILNSLDIVSNTVGNQVIANTIATAKREIQQGGMMSFALQKANVFPP 332

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                 +  +    +  G L   +  ++    D      K     +E      I   +  
Sbjct: 333 -----LAIQMISIGEETGELDTMMMKVADFYEDEVEQAVKALTSIIEPLMMVAIGVMVGT 387

Query: 139 CVSTLVYFTSPGY 151
            + ++       +
Sbjct: 388 ILVSMYLPMFKVF 400


>gi|325969463|ref|YP_004245655.1| type II secretion system protein [Vulcanisaeta moutnovskia 768-28]
 gi|323708666|gb|ADY02153.1| type II secretion system protein [Vulcanisaeta moutnovskia 768-28]
          Length = 276

 Score = 38.2 bits (87), Expect = 0.58,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 70/182 (38%), Gaps = 7/182 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLS-- 64
           RT+ F     N L I+   V +G+ + + +  +   +    +  EF+ +++    G    
Sbjct: 87  RTSHFERYLANTLMIMTPLVASGVTLEELIDTLAIIERDPYIAREFKIILKDAREGGMDI 146

Query: 65  ---LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
              L  S++R+      +  S  +    + + L   L   L  L R   ++     +V +
Sbjct: 147 LTALRASLNRVPSRTYNEVFSLITETYLISANLADILMLKLEYLVRNKYNKLRSATQVLS 206

Query: 122 LSMEAKASAWIIGSLPFCVSTL-VYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           L ME      ++  +   +  + +    P Y+  +   P   +L+       ++G ++  
Sbjct: 207 LFMEVYLVTALLLPILLVLIIVTISPLGPIYLGSITLSPTLVLLITTLIYSPVMGYVMYL 266

Query: 181 LM 182
           L+
Sbjct: 267 LI 268


>gi|237786541|ref|YP_002907246.1| hypothetical protein ckrop_1995 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237759453|gb|ACR18703.1| hypothetical protein ckrop_1995 [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 158

 Score = 38.2 bits (87), Expect = 0.58,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 50/137 (36%), Gaps = 4/137 (2%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           LD++   +  GLPV  AV  +           ++       +G+    + +       L 
Sbjct: 24  LDLVKACLSCGLPVGAAVGAVADSGGSQFVDVWKGTANRLAMGVDSDIAWALCAENEVLG 83

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IGSLPF 138
           + +  +      ++ G  L+  +  LS  +R R   +A  +A       +  +    LP 
Sbjct: 84  DFARRARR---SARSGAQLAADIGALSMHMRHRATDQAVAEAEKASVYVALPLSFCFLPA 140

Query: 139 CVSTLVYFTSPGYMNVL 155
            ++  +   + G ++ L
Sbjct: 141 FIAVGLVPIAIGLLSGL 157


>gi|307265042|ref|ZP_07546603.1| Type II secretion system F domain protein [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306920027|gb|EFN50240.1| Type II secretion system F domain protein [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 249

 Score = 38.2 bits (87), Expect = 0.58,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 48/145 (33%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            ++ P AL++ +  +  G+   + +  IV      VR            G SL ++++  
Sbjct: 103 EEELPAALEVFISGLEVGMNKENIIGYIVRTRKGVVRDLLYEAQVRIDTGSSLKDALTFA 162

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                      F   ++ + +   ++ E L  L   + +R   +   +A +++      I
Sbjct: 163 ADKSLNDHFKRFVKAVTGEYESVKDMRENLEELLEEVEERNYNQKIERAGTLDNSLFFPI 222

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIN 157
                  +  +        +    N
Sbjct: 223 FLGYFVPILVMFALPFVISLRSFFN 247


>gi|304438674|ref|ZP_07398612.1| possible general secretion pathway protein F [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304368323|gb|EFM22010.1| possible general secretion pathway protein F [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 407

 Score = 38.2 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/140 (10%), Positives = 34/140 (24%), Gaps = 3/140 (2%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   +  GLP+  A+  +         S              +             
Sbjct: 72  FFQELSALLAVGLPLHRALERLRDGVGATSSSGRLLHALHHAAMQGM---PLSQAMETKR 128

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           Q  S     +    +  G+L   L   +  L +   M+  + +  +        +     
Sbjct: 129 QIFSPVLIGMVRAGEESGSLDVVLGAAASFLTEEYRMREALWSALLYPLFLLAAVVLSIV 188

Query: 139 CVSTLVYFTSPGYMNVLIND 158
            ++  +       +  L  D
Sbjct: 189 LMTVFILPIFAALLADLHAD 208


>gi|269958190|ref|YP_003327978.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
           15894]
 gi|269306871|gb|ACZ32420.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
           15894]
          Length = 303

 Score = 38.2 bits (87), Expect = 0.62,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 47/159 (29%), Gaps = 5/159 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   +K   +F        D++      G     A+ +      + V       +    
Sbjct: 149 VRDDARKARVEFGRALGAYTDLVALERLGGSGTRQAMELAAEVGDNWVFRRLSEELARSR 208

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
               +  +++  +   + L E+   + ++ +  +    +   L   S  LR      A  
Sbjct: 209 WSGLAPWDAMHVLADELGLPELDDLADIMRLSKEGSQ-VYAQLRARSEGLRSAMLNAA-- 265

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158
                 A      I      +  LV   +P  + ++  +
Sbjct: 266 -LGKSNAAGERMTIPMALLSIMFLVILITPSLLRLMGGE 303


>gi|257389095|ref|YP_003178868.1| hypothetical protein Hmuk_3056 [Halomicrobium mukohataei DSM 12286]
 gi|257171402|gb|ACV49161.1| conserved hypothetical protein [Halomicrobium mukohataei DSM 12286]
          Length = 564

 Score = 37.8 bits (86), Expect = 0.62,   Method: Composition-based stats.
 Identities = 21/178 (11%), Positives = 57/178 (32%), Gaps = 6/178 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI-ETQHLGLSLSES 68
                  P+AL +I R V  G     AV  +         +    V    + LG+ L  +
Sbjct: 346 EAVEAGLPDALSLIGRRVTRGTATERAVEDVATAVPGATGTVLAEVAGRQRRLGVDLRTA 405

Query: 69  I---SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
                  +  +P +     ++++++ ++ G    +AL  ++  L+     +   +    +
Sbjct: 406 FVGERGALATVPSERAESAASLLALSAREGRPAGDALLAMADHLQTIDEAEQANRRAVAQ 465

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
              +     ++   +           M      P G  +        +   +++  ++
Sbjct: 466 VTNTLSNTAAVFAPLVGGATVALSAAMGS--AGPLGGSVATADLGLAVGWYVLVLAIV 521


>gi|86130928|ref|ZP_01049527.1| general secretion pathway protein F [Dokdonia donghaensis MED134]
 gi|85818339|gb|EAQ39499.1| general secretion pathway protein F [Dokdonia donghaensis MED134]
          Length = 376

 Score = 37.8 bits (86), Expect = 0.65,   Method: Composition-based stats.
 Identities = 18/160 (11%), Positives = 52/160 (32%), Gaps = 11/160 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   + +G+ + DA+ +I         + F + +    +              M  +E +
Sbjct: 47  LSVLLNSGIRLKDALYLISESQKKKEDALFFKKLRDHIIAGD-----DFSKVLMGQKEFT 101

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
            +        +  G L+   ++LS   + +   +  + +          ++G+    V  
Sbjct: 102 RYEEHSIRIGEQSGTLTSVSSSLSDFYKRKNEQRRNIVSALTYPA---IVLGTAMLAVIF 158

Query: 143 LVYFTSPGYMNVLINDPRGHMLLG--VAAAFMLIG-IMVM 179
           ++ F  P + +    +      +   V A    +G    +
Sbjct: 159 MLQFVVPMFKDTFRQNNVELPAITKAVIAVSEGVGNYGWI 198


>gi|149174856|ref|ZP_01853480.1| fimbrial assembly protein PilC [Planctomyces maris DSM 8797]
 gi|148846193|gb|EDL60532.1| fimbrial assembly protein PilC [Planctomyces maris DSM 8797]
          Length = 507

 Score = 37.8 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 44/139 (31%), Gaps = 7/139 (5%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM-VRY 75
           P+ L  I +S+ A      A++             +  V        +       +    
Sbjct: 374 PDCLRQIAQSISAQQQPQIALSSASQ------YHLWADVRIRSESVKNRVNQGENLWASL 427

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
              + +S     + V ++  GNL E L  L+  +  R+N K +V A  ++      +   
Sbjct: 428 QHAKIISRSEAALCVTAERVGNLPEVLRALALSIEQRRNRKLRVLADLLKPVIVCTLGLV 487

Query: 136 LPFCVSTLVYFTSPGYMNV 154
           +   V  L         + 
Sbjct: 488 VGLFVIALFIPIVQLIFDF 506


>gi|86742016|ref|YP_482416.1| type II secretion system protein [Frankia sp. CcI3]
 gi|86568878|gb|ABD12687.1| type II secretion system protein [Frankia sp. CcI3]
          Length = 294

 Score = 37.8 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 8/71 (11%), Positives = 20/71 (28%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +      R  +        LD++   +  GL +  A+            +E R  ++   
Sbjct: 137 LHRRASARRQETRLAVAAYLDLVRILLVGGLSLHTALQTAADAGRGWAFTEIRAALQWAR 196

Query: 61  LGLSLSESISR 71
                 ++   
Sbjct: 197 ARHVPPDAGLN 207


>gi|330947086|gb|EGH47866.1| type II secretion system protein [Pseudomonas syringae pv. pisi
           str. 1704B]
 gi|330948094|gb|EGH48354.1| type II secretion system protein [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 51

 Score = 37.8 bits (86), Expect = 0.69,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 25/49 (51%)

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +P  ++      +P Y+  + +D  G ++L VA A  + G +V+  M+ 
Sbjct: 1   MPISMAGYFLAVNPSYLLHMWDDESGKIMLSVAFALQVTGCVVLWRMLR 49


>gi|306821269|ref|ZP_07454881.1| type IV pilus-assembly protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550669|gb|EFM38648.1| type IV pilus-assembly protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 335

 Score = 37.8 bits (86), Expect = 0.69,   Method: Composition-based stats.
 Identities = 16/148 (10%), Positives = 46/148 (31%), Gaps = 10/148 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
             + +    ++G+P+  ++ ++    +   ++  + V +  + G  LS+++S        
Sbjct: 12  FFESLYELTKSGIPLLKSMDIV----NTKNKAMVQEVKDQLNNGELLSKALSDTGL---- 63

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
              S  +  I    +  GN       L +        +  +           + I  L  
Sbjct: 64  --FSDTALSIIKTGEWTGNFELCFEKLYKYYERMNETRKNIIISLFYPAILVFSIFFLLI 121

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLG 166
            ++           ++  N      L+ 
Sbjct: 122 FINFYFIPQISSLYDMNKNTSAFVSLMF 149


>gi|238854828|ref|ZP_04645158.1| competence protein [Lactobacillus jensenii 269-3]
 gi|260664115|ref|ZP_05864968.1| competence protein [Lactobacillus jensenii SJ-7A-US]
 gi|282933906|ref|ZP_06339254.1| competence protein [Lactobacillus jensenii 208-1]
 gi|313472331|ref|ZP_07812823.1| competence protein [Lactobacillus jensenii 1153]
 gi|238832618|gb|EEQ24925.1| competence protein [Lactobacillus jensenii 269-3]
 gi|239529813|gb|EEQ68814.1| competence protein [Lactobacillus jensenii 1153]
 gi|260562001|gb|EEX27970.1| competence protein [Lactobacillus jensenii SJ-7A-US]
 gi|281301995|gb|EFA94249.1| competence protein [Lactobacillus jensenii 208-1]
          Length = 333

 Score = 37.8 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 59/171 (34%), Gaps = 16/171 (9%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +K      +     L+ +  S++ GL +++++ V        + + + +          L
Sbjct: 9   RKDKLTAQEQL-EFLEYLAMSLKNGLSLAESLQV--------MPALWSKKQMLLKKITYL 59

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +      + +               + + GNL+E L+ L  I R ++    K++A    
Sbjct: 60  MKQGVNFSQILQQMGFGKTIASQVDLAMMQGNLNECLSQLVIINRLKEQQVKKLKAELSY 119

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
                    +L   +  ++ F      + L  +     L+  +   M +GI
Sbjct: 120 P-------ITLFVLMIFMLLFMQNFLSSQLGQEDGTANLVFASLIIMALGI 163


>gi|78045324|ref|YP_361574.1| putative PilR-like integral membrane protein [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|78033828|emb|CAJ19827.1| putative PilR-like integral membrane protein [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 365

 Score = 37.8 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 15/129 (11%), Positives = 43/129 (33%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L  +   + AG+P+  A+  +   ++  +R      +     G +  +++       P 
Sbjct: 238 FLLNVSALLAAGIPLEQALIDMARYANAYLRERIDDTLRGIKTGANFGQALHFTEHDFPD 297

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           ++       ++ +      L +           ++NMK   ++ ++       I   +  
Sbjct: 298 KDTVRNVKTLAEKKGFEVALEKFTKR-----WLKQNMKLMERSAAILRLIMLLIGAYVIV 352

Query: 139 CVSTLVYFT 147
            +   VY  
Sbjct: 353 TMFQGVYGI 361


>gi|261417704|ref|YP_003251386.1| type II secretion system protein F [Geobacillus sp. Y412MC61]
 gi|319767487|ref|YP_004132988.1| type II secretion system F domain protein [Geobacillus sp.
           Y412MC52]
 gi|261374161|gb|ACX76904.1| Type II secretion system F domain protein [Geobacillus sp.
           Y412MC61]
 gi|317112353|gb|ADU94845.1| Type II secretion system F domain protein [Geobacillus sp.
           Y412MC52]
          Length = 342

 Score = 37.8 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 54/154 (35%), Gaps = 12/154 (7%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               + R +  G P+  A+  +  Q+    R E  R ++    GL L  ++  +      
Sbjct: 14  FFTRLGRLLERGYPLGQALEFLAIQAPTHRRLEIERCLQQLRAGLPLFAAVEALS----- 68

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
             V   +  +   ++  G+L   +A     L  +     +++  S       +++  L  
Sbjct: 69  --VDRMAVNLLFFAERHGDLPRGMAETGETLAQKARFHEQLRRFSRYPM---FLLSLLII 123

Query: 139 CVSTLVYFTSPGY--MNVLINDPRGHMLLGVAAA 170
            +  + ++  P +       +  RGH    +A  
Sbjct: 124 MLVLMEWWLLPQFERAAAAFSPQRGHTAWLLAVV 157


>gi|83592054|ref|YP_425806.1| Mg2+ transporter protein, CorA-like [Rhodospirillum rubrum ATCC
           11170]
 gi|83574968|gb|ABC21519.1| Mg2+ transporter protein, CorA-like [Rhodospirillum rubrum ATCC
           11170]
          Length = 346

 Score = 37.8 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 52/146 (35%), Gaps = 6/146 (4%)

Query: 40  IVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL----QEVSFFSTVISVQSQLG 95
           +  +  + +      ++  +        +++R++ +       Q+       ++  ++  
Sbjct: 198 VEEEIEEGLHQSRIDIVSLRRYLAPQQAALTRLMGHPHPALSAQDREILGAALATFTRYV 257

Query: 96  GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            +L ++L   + +LRDR   +A+ +      K +      LP    T +   + G M   
Sbjct: 258 EDL-DSLREQAALLRDRIQQRAQQRINRSIYKMTLLAGIFLPLTFFTGLLGVNLGGM-PG 315

Query: 156 INDPRGHMLLGVAAAFMLIGIMVMRL 181
              P G  +L      + IG  +   
Sbjct: 316 AQSPFGFWILVGLLVALAIGEFLYIR 341


>gi|326383472|ref|ZP_08205159.1| Type II secretion system F domain-containing protein [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326197878|gb|EGD55065.1| Type II secretion system F domain-containing protein [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 188

 Score = 37.8 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 3/137 (2%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
           D +   +RAGLP++ A AV    +   +RS F R  +   LG    ++           +
Sbjct: 51  DTLAVCLRAGLPLATAAAVAAETAPPELRSSFTRAADLLALGADPDQAW--APVDADSVD 108

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IGSLPFC 139
            +  + +IS  S+ G  L++++   +   R R    +   A     K S  + +  LP  
Sbjct: 109 FAELAALISRASRAGSALADSVGGFADATRRRAENASLEAAERAGVKISGPLGLCFLPAF 168

Query: 140 VSTLVYFTSPGYMNVLI 156
           V   +     G  + L+
Sbjct: 169 VCLGIVPVVIGLASSLL 185


>gi|159905381|ref|YP_001549043.1| flagellar assembly protein J [Methanococcus maripaludis C6]
 gi|159886874|gb|ABX01811.1| type II secretion system protein [Methanococcus maripaludis C6]
          Length = 558

 Score = 37.8 bits (86), Expect = 0.72,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 66/181 (36%), Gaps = 13/181 (7%)

Query: 15  DFPNALDIIVRSVRA-GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +FP+ L  +  SV A G  ++D++  +      P+  +   + +   + ++  ++     
Sbjct: 331 NFPDFLRSLGDSVSAKGGGMTDSLEYLSSNDFGPLTKDLEGLYKRVSIRVNSQKAWRYFG 390

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                  +  FS +    + LGGN   A   + +  R   N++ K +  S+   +     
Sbjct: 391 YDTCSYMIQLFSEMFERCTFLGGNAGLAAHMIGKNFRKIINLR-KAKYQSVSQFSGIMYG 449

Query: 134 GSLPFCVSTLVYFTSPGYMNVLIND---PRGHMLLG-------VAAAFMLI-GIMVMRLM 182
            S    ++          +N L      P   + L         +    LI G++V+  +
Sbjct: 450 LSGGMALTLYASAGVADMVNGLYTTLDIPDTMISLVNIITPEDFSLIAYLIYGVLVIYSI 509

Query: 183 I 183
           +
Sbjct: 510 V 510


>gi|85704681|ref|ZP_01035783.1| general secretion pathway protein F [Roseovarius sp. 217]
 gi|85671089|gb|EAQ25948.1| general secretion pathway protein F [Roseovarius sp. 217]
          Length = 403

 Score = 37.8 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 49/177 (27%), Gaps = 12/177 (6%)

Query: 4   LIKKRTAKFLDDF-PNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHL 61
           L + R  +   D        +   + + L    A+  I    +S  + +           
Sbjct: 53  LARSRRTRLNADMRAVFTRQMAVLLSSDLSAEMALETIRSSGTSPVIEAAAAEAKAALMD 112

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  LS S+ +     P      F        +  G+++     L+  L      +A++  
Sbjct: 113 GQPLSVSLDKANAGFP-----RFYIAAVRAGETSGDVAVVFEGLADYLETVGADRAQLAT 167

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             +      ++          L+   +P    +     R    L      M I   +
Sbjct: 168 ALIYPA---FVAAVSLLVCGILMVNVAPEIAAMFAVSGRELPPLTQVV--MAISDWI 219


>gi|297529397|ref|YP_003670672.1| type II secretion system F domain protein [Geobacillus sp. C56-T3]
 gi|297252649|gb|ADI26095.1| Type II secretion system F domain protein [Geobacillus sp. C56-T3]
          Length = 342

 Score = 37.8 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 54/154 (35%), Gaps = 12/154 (7%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               + R +  G P+  A+  +  Q+    R E  R ++    GL L  ++  +      
Sbjct: 14  FFTRLGRLLERGYPLGQALEFLAIQAPTHRRLEIERCLQQLRAGLPLFAAVEALS----- 68

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
             V   +  +   ++  G+L   +A     L  +     +++  S       +++  L  
Sbjct: 69  --VDRMAVNLLFFAERHGDLPRGMAETGETLAQKARFHEQLRRFSRYPM---FLLSLLII 123

Query: 139 CVSTLVYFTSPGY--MNVLINDPRGHMLLGVAAA 170
            +  + ++  P +       +  RGH    +A  
Sbjct: 124 MLVLMEWWLLPQFERAAAAFSPQRGHTAWLLAVI 157


>gi|281415508|ref|ZP_06247250.1| type II secretion system protein F [Micrococcus luteus NCTC 2665]
          Length = 239

 Score = 37.8 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 36/141 (25%), Gaps = 7/141 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            LD++   + AG  +  A+  +               +         + +          
Sbjct: 105 VLDVLAALLSAGRSLPAALDDLGRTLPGARGLRATAALLLWGRDWDEAWAGLD-----TD 159

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                 +  +    + G   +  LA  +  +R +     +  A  +       +   L  
Sbjct: 160 PVWIETAARLRPLHRSGMAGARTLAETAAAVRQQTRRADERAAEELAVCLVMPLGLCLLP 219

Query: 139 CVSTLVYFTSPGYMNVLINDP 159
                 +   P  M +L   P
Sbjct: 220 AFVC--WGVVPVVMALLRAGP 238


>gi|228916876|ref|ZP_04080439.1| ComG operon protein 2 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228842799|gb|EEM87884.1| ComG operon protein 2 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 315

 Score = 37.8 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 7/132 (5%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
                +   +  GL V +A+ +++ Q      + E  R+      G  L   I++     
Sbjct: 184 YFATQLSGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIAGEPLQSIIAKSG--- 240

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
                    + I    Q  GNL+  L + S ++ ++   K K   + ++      I G +
Sbjct: 241 ---YYEEELSYIITHGQANGNLAIELGDYSDLIMEKMEQKMKRMLVIIQPILFTCIGGIV 297

Query: 137 PFCVSTLVYFTS 148
                 ++    
Sbjct: 298 VLMYLAMIMPMF 309


>gi|32477191|ref|NP_870185.1| general secretion pathway protein F- pilus protein [Rhodopirellula
           baltica SH 1]
 gi|32447742|emb|CAD77260.1| general secretion pathway protein F-putative pilus protein
           [Rhodopirellula baltica SH 1]
          Length = 346

 Score = 37.8 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 19/175 (10%), Positives = 46/175 (26%), Gaps = 16/175 (9%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           +        + AG  +   +       S   R    ++ E    G ++SE          
Sbjct: 13  DFCRRFGVGLGAGADLLKLLESEAKHGSAQQRVAMTKIREGAKDGHAISEM-----MRHQ 67

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                    V++   +  G L   +  LS     +  ++               I   + 
Sbjct: 68  KPFFPPLMVVMTRVGETTGKLERTMLALSEHYAQQYTLRQNFLRAIAWPGLQLLIGIGVV 127

Query: 138 FCVSTLVYFTSP-------GYMNVLINDPRGHML----LGVAAAFMLIGIMVMRL 181
             +  ++   +          +   +  P+G ++    + V  A        +R 
Sbjct: 128 SLMIWIMGVLTAPTGGQMTDMLGFGLRGPKGVLIFWSYIAVVVAVFGGIYFAVRK 182


>gi|312126627|ref|YP_003991501.1| hypothetical protein Calhy_0384 [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776646|gb|ADQ06132.1| hypothetical protein Calhy_0384 [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 252

 Score = 37.8 bits (86), Expect = 0.74,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 54/155 (34%), Gaps = 1/155 (0%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQH 60
           K + + R  K      +   +    ++AGL +    AVI         +  F +   T  
Sbjct: 92  KEIERTRKNKLRSSIADIALMCELGLKAGLSLDRIFAVIAETIVEPRYKDAFLQAAATYK 151

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
              ++ +  + +   + L E+      +    ++G +  ++L   S++    K  +   +
Sbjct: 152 TTHNIEDCFTILRSQLDLPELEILKRALLEVEKVGLSGIQSLEVFSQVETMNKIEQIYKK 211

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +    +  +  I+  +   +S   +       + L
Sbjct: 212 SDKARSYTTYAIVAMVFALISIYFFPLFKLATDTL 246


>gi|15920738|ref|NP_376407.1| hypothetical protein ST0521 [Sulfolobus tokodaii str. 7]
 gi|15621521|dbj|BAB65516.1| 634aa long hypothetical protein [Sulfolobus tokodaii str. 7]
          Length = 634

 Score = 37.8 bits (86), Expect = 0.76,   Method: Composition-based stats.
 Identities = 17/182 (9%), Positives = 60/182 (32%), Gaps = 2/182 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQ 59
           +   ++ R      +      + +  +R+GL        +    + + + S  + +++  
Sbjct: 125 VSQKVESRRIGVEAETLAFSALFLVFLRSGLSPRLLFENLSKTKAFNYMNSIAKYIVKRI 184

Query: 60  HLGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +    S+ ++I    + +P +  +          + G  + E + +  + +     ++A 
Sbjct: 185 NFLGESVEKAIDESTKIVPSKLYNDLMVTYITAIRTGAPVFETMQSKIKDILKNMELQAS 244

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             A ++      ++       +S  +          L   P G +         ++ I+ 
Sbjct: 245 KAADNLSGVGEGYVTWLASGFISFFLILILEAVFPQLHVLPIGILGAFAVLGIPIVNILF 304

Query: 179 MR 180
           + 
Sbjct: 305 VW 306



 Score = 37.0 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 43/122 (35%), Gaps = 1/122 (0%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            L  I    RAGL     +  +        +++  RRV    +LG+ + ++  +    + 
Sbjct: 415 FLRAIGEGSRAGLSPEAVIKNLKDSKELGKLQNILRRVYAYINLGIPIKDAFRKASDIII 474

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                   T ++   ++G    E++  L+  L  +  ++ +  A         ++   L 
Sbjct: 475 DFSTKIAFTSLADMIEIGSLTPESVETLADQLDAQIRIRREYYAKIKILLYMPYVGSILA 534

Query: 138 FC 139
             
Sbjct: 535 LI 536


>gi|307945538|ref|ZP_07660874.1| insertion sequence transposase protein [Roseibium sp. TrichSKD4]
 gi|307946349|ref|ZP_07661684.1| insertion sequence transposase protein [Roseibium sp. TrichSKD4]
 gi|307770013|gb|EFO29239.1| insertion sequence transposase protein [Roseibium sp. TrichSKD4]
 gi|307771411|gb|EFO30636.1| insertion sequence transposase protein [Roseibium sp. TrichSKD4]
          Length = 410

 Score = 37.8 bits (86), Expect = 0.77,   Method: Composition-based stats.
 Identities = 14/114 (12%), Positives = 30/114 (26%), Gaps = 1/114 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             ++R    L+   +   +I   +  G PV  A                 R      L  
Sbjct: 32  KKRRRRLTVLNQLDDFNRLIAALLDYGRPVRAAFEATGNYHRALAYRL-GRAGFEVKLVS 90

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
           S++ + +R        +       + +     GN       +     D + +  
Sbjct: 91  SVALARTREALNNSWDKNDPKDAQVILHMMQIGNEQFYHDPMLCGTNDLQELSK 144


>gi|300857636|ref|YP_003782619.1| hypothetical protein cpfrc_00219 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685090|gb|ADK28012.1| hypothetical protein cpfrc_00219 [Corynebacterium
           pseudotuberculosis FRC41]
          Length = 207

 Score = 37.8 bits (86), Expect = 0.77,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 8/129 (6%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSE---FRRVIETQHLGLSLSESISRMVR 74
           LD+    V++GL  S +   +    +SS         +  V     +G+    +   +  
Sbjct: 67  LDLFAACVQSGLTPSQSAFAVAATEESSPRDARVRSGWLEVAMMLEMGMPAERAWQSLAE 126

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                 +    TV     + G  L+EA   L+R LR R +  +  +A       +  +  
Sbjct: 127 ---HPALGDLVTVARASERSGATLAEACERLARQLRARASDLSLARAERAGVLIALPLTV 183

Query: 135 SLPFCVSTL 143
                   L
Sbjct: 184 CFLPAFFLL 192


>gi|256396007|ref|YP_003117571.1| type II secretion system protein [Catenulispora acidiphila DSM
           44928]
 gi|256362233|gb|ACU75730.1| type II secretion system protein [Catenulispora acidiphila DSM
           44928]
          Length = 297

 Score = 37.8 bits (86), Expect = 0.77,   Method: Composition-based stats.
 Identities = 14/127 (11%), Positives = 43/127 (33%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            LD    ++  G  +  A+           R+    + +++         +  + + + +
Sbjct: 161 FLDQAATTLAGGAGIEQALVAAADGHGPVFRAIRDSITDSRLAREPAWPHLDALGKRLGI 220

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +E+   +   ++    G  +  ++A  +R +R+R+         +   + +         
Sbjct: 221 RELCELAAACTLAGAEGAKVKSSIAAKARSMREREFAAQTEAVEADSERLAMPGGLLGMS 280

Query: 139 CVSTLVY 145
            V  L Y
Sbjct: 281 FVCFLTY 287


>gi|218905379|ref|YP_002453213.1| comG operon protein 2 [Bacillus cereus AH820]
 gi|218539897|gb|ACK92295.1| comG operon protein 2 [Bacillus cereus AH820]
          Length = 343

 Score = 37.8 bits (86), Expect = 0.77,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 7/132 (5%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
                +   +  GL V +A+ +++ Q      + E  R+      G  L   I++     
Sbjct: 212 YFATQLSGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIAGEPLQSIIAK----- 266

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
             +      + I    Q  GNL+  L + S ++ ++   K K   + ++      I G +
Sbjct: 267 -SEYYEEELSYIITHGQANGNLAIELGDYSDLIMEKMEQKIKRMLVIIQPILFTCIGGIV 325

Query: 137 PFCVSTLVYFTS 148
                 ++    
Sbjct: 326 VLMYLAMIMPMF 337


>gi|322371097|ref|ZP_08045649.1| type II secretion system protein [Haladaptatus paucihalophilus
           DX253]
 gi|320549087|gb|EFW90749.1| type II secretion system protein [Haladaptatus paucihalophilus
           DX253]
          Length = 570

 Score = 37.8 bits (86), Expect = 0.78,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 58/183 (31%), Gaps = 12/183 (6%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR---RVIETQH 60
           L++ R      D  +AL ++ R V+ GL V  A+     +      + F    R+     
Sbjct: 345 LVRNRVRAVEADLTDALYLVGRRVKEGLAVETAIVAAADEIGGETGAVFERATRIQRQLR 404

Query: 61  LGLSLSESISRMVRYM-PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           +G+  S           P         ++++ +  G     A+  ++  L D ++++ + 
Sbjct: 405 MGVRESFLGDYGALSTVPSPRARSAVALLALAADEGRPAGGAVLAMADHLDDLQSVEREA 464

Query: 120 QALSMEAK--------ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
           +    +              ++      ++  +      + +    D  G  +       
Sbjct: 465 RRELSQVTETLRHTAAIFGPLVSGATVALAGGMSGMGGSFGSAFPVDVLGLAVGIYVLCL 524

Query: 172 MLI 174
             I
Sbjct: 525 SAI 527


>gi|189424037|ref|YP_001951214.1| type II secretion system protein [Geobacter lovleyi SZ]
 gi|189420296|gb|ACD94694.1| type II secretion system protein [Geobacter lovleyi SZ]
          Length = 387

 Score = 37.8 bits (86), Expect = 0.78,   Method: Composition-based stats.
 Identities = 11/137 (8%), Positives = 37/137 (27%), Gaps = 3/137 (2%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
                +    L  I   ++AG+P+S  +   +                   +        
Sbjct: 48  KAKRKELAAVLVAIGDLLQAGVPLSKTLETTIQSLPRASSLITILNAIKTAVQQGRE--- 104

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
                          +  +    +  G L+E+L   ++ + + +  +++++         
Sbjct: 105 LSSAMTAYHSVFGSTTISMIQAGEKSGRLAESLLGAAQYITNIEASQSEMKKTLSYPLVI 164

Query: 130 AWIIGSLPFCVSTLVYF 146
             +        + +V  
Sbjct: 165 FIVSVIALVVNTQVVIP 181


>gi|159041006|ref|YP_001540258.1| hypothetical protein Cmaq_0423 [Caldivirga maquilingensis IC-167]
 gi|157919841|gb|ABW01268.1| hypothetical protein Cmaq_0423 [Caldivirga maquilingensis IC-167]
          Length = 307

 Score = 37.8 bits (86), Expect = 0.80,   Method: Composition-based stats.
 Identities = 19/176 (10%), Positives = 61/176 (34%), Gaps = 4/176 (2%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
              + P  + +I   +  GL +++ + +   Q     R    R+  +      LS ++  
Sbjct: 83  ITGELPIFIRVIRDGLSTGLTITETINLTFKQGGVLARELGGRLRLSVVGPGELSAALMG 142

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEAL----ANLSRILRDRKNMKAKVQALSMEAK 127
           +   +  + +   S V+    + G   +E L      L  ++ +  +    ++     A 
Sbjct: 143 LAHELNNRYLELASIVLESALRSGTKAAEVLDLAYRELDNVVVNELDKVNSLKPYIALAY 202

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
               I   L   +  ++        + +++     ++   + +  +I  + +  ++
Sbjct: 203 TIIIIYVFLGSVILAILIPRLISVTSTIVSSLPTGLISFGSLSINVINSLFVYSIM 258


>gi|307295329|ref|ZP_07575168.1| Type II secretion system F domain protein [Sphingobium
           chlorophenolicum L-1]
 gi|306878832|gb|EFN10051.1| Type II secretion system F domain protein [Sphingobium
           chlorophenolicum L-1]
          Length = 287

 Score = 37.4 bits (85), Expect = 0.81,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 51/154 (33%), Gaps = 6/154 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSES 68
            + +FP  LD+++  + +G+ +      I    +            ++     G+    +
Sbjct: 135 IMAEFPFLLDLMLMMLESGVSLDQCFRSIARDEAIAVPHHARLIAMLVADLERGMRYDLA 194

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           + R    + +      + +       G  L+ AL    R    R+ M+A+     M    
Sbjct: 195 LDRWAARVAVSGARELAALFRQALFQGVELAPALREFVREFTQRRVMRAREA---MGGIT 251

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162
              ++  + F +  L        +  + +  RG 
Sbjct: 252 VRMVVLMILFFMPALFVVLGGPPVVAIFDTLRGI 285


>gi|260886328|ref|ZP_05897591.1| general secretion pathway protein F [Selenomonas sputigena ATCC
           35185]
 gi|330839698|ref|YP_004414278.1| Type II secretion system F domain protein [Selenomonas sputigena
           ATCC 35185]
 gi|260864047|gb|EEX78547.1| general secretion pathway protein F [Selenomonas sputigena ATCC
           35185]
 gi|329747462|gb|AEC00819.1| Type II secretion system F domain protein [Selenomonas sputigena
           ATCC 35185]
          Length = 397

 Score = 37.4 bits (85), Expect = 0.81,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 45/140 (32%), Gaps = 8/140 (5%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSE 67
             +   +     D +   + +G  + +A+A   G   +  + + F R       G +L+ 
Sbjct: 256 RLRLDLELMTLFDTLAVLMESGSALHEALAASEGVVQNRFLAALFSRTRREVERGGTLAA 315

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +++          V      +    +  G L+  L   +   R    M+A+     +E  
Sbjct: 316 ALA-------GSVVPPLVWELVRAGEHTGELAAMLEKAADFCRFAGEMRAERMEAMLEPL 368

Query: 128 ASAWIIGSLPFCVSTLVYFT 147
              ++   +   V  +    
Sbjct: 369 LVLFLGAVVGTVVLAVALPL 388



 Score = 37.0 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 57/171 (33%), Gaps = 6/171 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           HL ++R A            +   + AGL  ++++ ++   +    R+    +      G
Sbjct: 49  HLARRRAADRKYAMV-FCRELALMLAAGLAANESLQLLAADAPQKRRAMLSDMARRMAHG 107

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            +L+E++++     P        + +    + GG+L   L  L+        ++ K+Q  
Sbjct: 108 ATLAEAMAQHGEVFPP-----AISSLVRAGEAGGSLEPLLKRLADKEEKSWRVREKLQTA 162

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
            +     A         +   V       ++ L  +      L +    + 
Sbjct: 163 LVYPALLALAAMFAVTFIFIFVLPNFVHMLDGLAVELPLPTRLVLGIGSLF 213


>gi|332098317|gb|EGJ03290.1| transport protein hofC domain protein [Shigella dysenteriae 155-74]
          Length = 207

 Score = 37.4 bits (85), Expect = 0.81,   Method: Composition-based stats.
 Identities = 13/110 (11%), Positives = 31/110 (28%), Gaps = 16/110 (14%)

Query: 88  ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           +    +L G L E    L+R  + ++ +  KV++          +   +   +   V   
Sbjct: 1   MIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIMVVVAMLHFVLPE 60

Query: 148 SPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVMRL 181
                                    +   G +L+       +   ++MR 
Sbjct: 61  FAAIYKTFNTPLPALTQGIMTLADFSGKWGWLLVLFGFLLAIANKLLMRR 110


>gi|124021732|ref|YP_001016039.1| pili biogenesis protein [Prochlorococcus marinus str. MIT 9303]
 gi|123962018|gb|ABM76774.1| pili biogenesis protein [Prochlorococcus marinus str. MIT 9303]
          Length = 426

 Score = 37.4 bits (85), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/135 (9%), Positives = 41/135 (30%), Gaps = 5/135 (3%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
                I    +RAG+P+  ++ +    + + + S+      T      L          +
Sbjct: 293 AQFCRIFSSLIRAGVPILMSLEIASETAGNAIISDAILESRTLVQEGVL-----LSAALI 347

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
             + +   +  +    +  G + + L+ ++    D  +   K     +E      +   +
Sbjct: 348 RQKVLPDMALNMLAIGEETGEMDQMLSKVADFYEDEVSTSVKALTSMLEPAMIVVVGVIV 407

Query: 137 PFCVSTLVYFTSPGY 151
              +  +       +
Sbjct: 408 GSILLAMYLPMFTVF 422


>gi|291525764|emb|CBK91351.1| hypothetical protein EUR_23630 [Eubacterium rectale DSM 17629]
          Length = 290

 Score = 37.4 bits (85), Expect = 0.83,   Method: Composition-based stats.
 Identities = 15/154 (9%), Positives = 47/154 (30%), Gaps = 2/154 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           ++K++  +  ++    +  I + ++    V   +      +    R E   V        
Sbjct: 137 MLKEKREQIEEELYRFVSTITQELKNSRDVLSMLEHYKENAGAAFRKELDIVCADMRS-S 195

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S   +++R    +   ++S     +    +           L+   +  +  + K +A  
Sbjct: 196 SYEAALTRFEARLNSPQLSDVVRGLIGVLRGDDGAV-YFQMLTHDFKQTEFQRLKAKAAK 254

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           +  K   +    L   ++T         +  +  
Sbjct: 255 IPPKIRVYSFAMLMCFLATYFAIIIYEIIRSMGT 288


>gi|41615076|ref|NP_963574.1| hypothetical protein NEQ285 [Nanoarchaeum equitans Kin4-M]
 gi|40068800|gb|AAR39135.1| NEQ285 [Nanoarchaeum equitans Kin4-M]
          Length = 606

 Score = 37.4 bits (85), Expect = 0.83,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 48/147 (32%), Gaps = 2/147 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLS 66
           +  K ++     L+ +   V  G  +  A+++   +     +      +    +    L 
Sbjct: 346 KIKKMVNQLIIFLETLKSYVSLGYSLERALSLTSKKLQGLEIAELLYNIENKINENKPLD 405

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAKVQALSME 125
            ++   ++      +     +I      G  +LSE L +L   LR       + + L  E
Sbjct: 406 IAVKEALKKYNNPIIETIFDIIIANYNKGLTSLSELLDSLLDYLRKVNAALERTKDLLSE 465

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYM 152
           A +   +   +   V   +      +M
Sbjct: 466 AISEMKMQIIMLIPVMLGIIVGIGNFM 492


>gi|15669091|ref|NP_247896.1| flagellar assembly protein J [Methanocaldococcus jannaschii DSM
           2661]
 gi|3024920|sp|Q58311|FLAJ_METJA RecName: Full=Flagella accessory protein J
 gi|1591576|gb|AAB98904.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 562

 Score = 37.4 bits (85), Expect = 0.83,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 52/145 (35%), Gaps = 2/145 (1%)

Query: 16  FPNALDIIVRSVRA-GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           FP+ L  +  SV A G  +  ++  +      P+  + +R+ +   LG+  ++S      
Sbjct: 335 FPDFLRSLGDSVSAKGGGMVSSLEYLSNHDFGPLTHDIKRLYKRLALGIDSNKSWRLFGF 394

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                 +  FS + S     GG+   A   +S+  R    ++ K +  +++         
Sbjct: 395 DSCSYLIQLFSDIFSRCIYFGGDPKTAAEIISKNFRKIVQLR-KSKYQNIQQFVGVVYGL 453

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDP 159
                ++          +N L +  
Sbjct: 454 GGGLALALFASLGVAKMINDLYSSL 478


>gi|289549030|ref|YP_003474018.1| type II secretion system F domain protein [Thermocrinis albus DSM
           14484]
 gi|289182647|gb|ADC89891.1| Type II secretion system F domain protein [Thermocrinis albus DSM
           14484]
          Length = 384

 Score = 37.4 bits (85), Expect = 0.85,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 56/154 (36%), Gaps = 8/154 (5%)

Query: 26  SVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
            +R+G+P++ AV  +  Q  D +     ++ E+   G ++ E+ +             F 
Sbjct: 65  MLRSGMPLAQAVESLALQ-EDKLSGPLLQIKESLEKGNAIPEAFASAG------VFPSFL 117

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
             +   ++ G NL + L    + L+    +KAK             +        S +V 
Sbjct: 118 IEMLRAAERGENLEKILETAGQFLQRMGQIKAKAIGSLAYPLFVLALSFLSLVVSSQMVV 177

Query: 146 FTSPGYMNVLIND-PRGHMLLGVAAAFMLIGIMV 178
                 +  +  D P    ++ + +     G++V
Sbjct: 178 PKIASVLKDMGKDLPLITKMVLLTSTVAFYGLLV 211


>gi|260775491|ref|ZP_05884388.1| type 4 fimbrial assembly protein PilC [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608672|gb|EEX34837.1| type 4 fimbrial assembly protein PilC [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 378

 Score = 37.4 bits (85), Expect = 0.86,   Method: Composition-based stats.
 Identities = 15/133 (11%), Positives = 45/133 (33%), Gaps = 5/133 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                  +  S+ +GLP+  ++ +    + +     ++R+IE     +S   +++  +R 
Sbjct: 244 LARFSHTLAISLNSGLPIISSLNIAARTTDN---RHYQRIIEQVTQQVSTGVALNAAMRR 300

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                +      + +  +  G L + L  ++           +    ++E      + G 
Sbjct: 301 SGN--IPELLLQMIMIGEESGQLDKMLNQIANQYEAEVESVIENLGKAIEPMLILLLGGL 358

Query: 136 LPFCVSTLVYFTS 148
           +   V  +     
Sbjct: 359 VGSLVIAMYLPIF 371


>gi|331086801|ref|ZP_08335878.1| hypothetical protein HMPREF0987_02181 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409967|gb|EGG89402.1| hypothetical protein HMPREF0987_02181 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 431

 Score = 37.4 bits (85), Expect = 0.88,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 36/130 (27%), Gaps = 9/130 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--------PVRSEFRRVIETQHLGLSLS 66
           D+P  L+  V  + AG+ V  A   I                  E    +     G S  
Sbjct: 284 DYPEILNKFVLFLGAGMTVKAAWQKISSDYEKGKIMGKERFAYEEMAYTLREMQAGGSEK 343

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANL-SRILRDRKNMKAKVQALSME 125
           E      +         F  ++S   + G      L  L +    + +   AK     + 
Sbjct: 344 ECYEHFGKRCEAVCYMRFGALLSQNLKRGSKGLADLLRLEAVNAFEERKRAAKKAGEEVG 403

Query: 126 AKASAWIIGS 135
            K  A +   
Sbjct: 404 TKLLAPMFFM 413


>gi|325911824|ref|ZP_08174228.1| type II secretion system protein F domain protein [Lactobacillus
           iners UPII 143-D]
 gi|325476330|gb|EGC79492.1| type II secretion system protein F domain protein [Lactobacillus
           iners UPII 143-D]
          Length = 331

 Score = 37.4 bits (85), Expect = 0.88,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 59/161 (36%), Gaps = 16/161 (9%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            LD + +S+  G   + ++ ++       V +E   +I+     ++       + + +  
Sbjct: 19  FLDYLQQSLNNGFSFNQSLKIL-----PHVWNEKVNIIKKLSSNIAQGN---DIGQSLVA 70

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
              S         +   GNL E+L+ L++I+R +     K+++  +          ++  
Sbjct: 71  IGFSRMIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIKSEMVYP--------AVLI 122

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            +   +      +++  ++          A    L+GI  +
Sbjct: 123 VMMVSLLIAMQTFLHSELSSDSSSSDFIFAIIVSLLGIFFI 163


>gi|164661407|ref|XP_001731826.1| hypothetical protein MGL_1094 [Malassezia globosa CBS 7966]
 gi|159105727|gb|EDP44612.1| hypothetical protein MGL_1094 [Malassezia globosa CBS 7966]
          Length = 465

 Score = 37.4 bits (85), Expect = 0.88,   Method: Composition-based stats.
 Identities = 12/99 (12%), Positives = 26/99 (26%), Gaps = 3/99 (3%)

Query: 8   RTAKFLDDFPN---ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           R  +    FP    A+  +V  ++ G  V DA+  +   +                    
Sbjct: 257 REKQQEAAFPTMEHAMKELVECMKPGESVLDALQRLGKATKSAKEQASSDQQSRAQFERL 316

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALA 103
              +   M +Y  +         +    +    + E   
Sbjct: 317 THIAGVLMSQYGHMNVYDDVYEGLVRMVRRARLVPEDWD 355


>gi|331694287|ref|YP_004330526.1| Type II secretion system F domain-containing protein
           [Pseudonocardia dioxanivorans CB1190]
 gi|326948976|gb|AEA22673.1| Type II secretion system F domain protein [Pseudonocardia
           dioxanivorans CB1190]
          Length = 243

 Score = 37.4 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 51/157 (32%), Gaps = 20/157 (12%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
           +++   + AG+PVS AV     Q   P     RRV     LG   +E+   +     L  
Sbjct: 107 ELLAVCLEAGMPVSTAVEAGAAQLDGPSGRALRRVAGLLELGADPAEAWQAVDGRPALVA 166

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
            +  +   +       +++           + + ++A+    +      A +  + P  +
Sbjct: 167 FARAARRSAATGAGIAHVART---------EAQRLRAETVDSARARAQRAAVTITGPLGL 217

Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
             L     P ++        G   + V  A   +   
Sbjct: 218 CFL-----PAFL------VLGIAPVVVGLAGDALARW 243


>gi|52141255|ref|YP_085574.1| comG operon protein 2 [Bacillus cereus E33L]
 gi|51974724|gb|AAU16274.1| comG operon protein 2 [Bacillus cereus E33L]
          Length = 343

 Score = 37.4 bits (85), Expect = 0.90,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 7/132 (5%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
                +   +  GL V +A+ +++ Q      + E  R+      G  L   I++     
Sbjct: 212 YFATQLSGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIAGEPLQSIIAKSG--- 268

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
                    + I    Q  GNL+  L + S ++ ++   K K   + ++      I G +
Sbjct: 269 ---YYEEELSYIITHGQANGNLAIELGDYSDLIMEKMEQKIKRMLVIIQPILFTCIGGIV 325

Query: 137 PFCVSTLVYFTS 148
                 ++    
Sbjct: 326 VLMYLAMIMPMF 337


>gi|15899139|ref|NP_343744.1| hypothetical protein SSO2386 [Sulfolobus solfataricus P2]
 gi|284173746|ref|ZP_06387715.1| hypothetical protein Ssol98_03698 [Sulfolobus solfataricus 98/2]
 gi|13815688|gb|AAK42534.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|261600888|gb|ACX90491.1| Type II secretion system F domain protein [Sulfolobus solfataricus
           98/2]
          Length = 616

 Score = 37.4 bits (85), Expect = 0.91,   Method: Composition-based stats.
 Identities = 22/183 (12%), Positives = 58/183 (31%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    + R      + P    +    +R+GL        +   ++    S+    +  + 
Sbjct: 117 LSQSTENRRIGLDSEAPAFAAVFNVFLRSGLSARYVFDYLSKSTAMQYASQIASYVNKRV 176

Query: 61  LG--LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
                S+  +I   + Y P +  + F T      + G  + E +   ++ +       A 
Sbjct: 177 KYLGESVESAIVESLNYSPSKIFNEFLTTYVTAVRTGAPVLETMEAKTKDILKNIETLAS 236

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM-LIGIM 177
             A ++   A  ++I      ++  +          L       ++   A   + LI ++
Sbjct: 237 TAAENLSGIAEGFVIWLSSGFITFFLVLLLQAIFPSLFGSVPFPVMAIFAMIMIPLINLL 296

Query: 178 VMR 180
            + 
Sbjct: 297 FIW 299


>gi|170702930|ref|ZP_02893770.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
 gi|170132169|gb|EDT00657.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
          Length = 149

 Score = 37.4 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 13/130 (10%), Positives = 39/130 (30%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+P++DA A +   +          ++      G  L++++     +  
Sbjct: 19  WCRSLATLLGAGVPLADAFATLERTAGHPVFEQATAQIAARVLRGARLADAMHAAGCFPD 78

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                         ++  G L   L +++ +   + + +        E      +   + 
Sbjct: 79  DVVQP------IAVAEETGALDTMLTDIAALCERQLDARLDALTALGEPLIVIVLGALVG 132

Query: 138 FCVSTLVYFT 147
             V  +    
Sbjct: 133 GLVIAMYLPI 142


>gi|111021318|ref|YP_704290.1| hypothetical protein RHA1_ro04342 [Rhodococcus jostii RHA1]
 gi|110820848|gb|ABG96132.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 196

 Score = 37.4 bits (85), Expect = 0.95,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 52/147 (35%), Gaps = 4/147 (2%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                 D++   +RAGLPV+ A   +   +  P+    RR  +   LG   + +      
Sbjct: 52  AIAATFDLLAACLRAGLPVATAAQAVSRTAPAPLSESLRRAADLLSLGADAATAWEAAAS 111

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-I 133
               + ++  +      +  G +L+ ++  L+   R +    A   A       S  + +
Sbjct: 112 DPATESLARMA---RRSAASGSSLAGSMTELAADGRIQVEHLAAAAAERAGVLISGPLGL 168

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR 160
             LP  +   +     G  + +++   
Sbjct: 169 CFLPAFICLGIIPVVVGLASRVLDGGL 195


>gi|52550503|gb|AAU84352.1| conserved hypothetical protein [uncultured archaeon GZfos9D8]
          Length = 266

 Score = 37.4 bits (85), Expect = 0.95,   Method: Composition-based stats.
 Identities = 20/181 (11%), Positives = 59/181 (32%), Gaps = 7/181 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS--EFRRVIETQHLGL-S 64
           R  K     P A+  I      G+   +    +     +   +  E ++++    L    
Sbjct: 83  RRRKIDGVLPYAVGYIASMAVIGVIPYEIFKKLSESEEEYKEASIEAKQIVRDVELFGFD 142

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
              ++  +      Q +S F       +  GG L     N  +        + +     +
Sbjct: 143 FVVALRNLASTTASQNLSAFLQGAVTTTLSGGELRMYFINKEKEYMAESRKEQEDFIALL 202

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
              +  +++G +   +  +V +T      +++      +L+ +    + +G +   ++ +
Sbjct: 203 GMISEMYVVGLVATPLFVIVMYT----TMLMLEGASPVILVAIIYGMIPLGSIAFIMLTD 258

Query: 185 F 185
            
Sbjct: 259 V 259


>gi|196034944|ref|ZP_03102351.1| comG operon protein 2 [Bacillus cereus W]
 gi|195992483|gb|EDX56444.1| comG operon protein 2 [Bacillus cereus W]
          Length = 343

 Score = 37.4 bits (85), Expect = 0.96,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 7/132 (5%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
                +   +  GL V +A+ +++ Q      + E  R+      G  L   I++     
Sbjct: 212 YFATQLSGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIAGEPLQSIIAKSG--- 268

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
                    + I    Q  GNL+  L + S ++ ++   K K   + ++      I G +
Sbjct: 269 ---YYEEELSYIITHGQANGNLAIELGDYSDLIMEKMEQKIKRMLVIIQPILFTCIGGIV 325

Query: 137 PFCVSTLVYFTS 148
                 ++    
Sbjct: 326 VLMYLAMIMPMF 337


>gi|326772540|ref|ZP_08231824.1| bacterial type II secretion system protein F domain-containing
           protein [Actinomyces viscosus C505]
 gi|326637172|gb|EGE38074.1| bacterial type II secretion system protein F domain-containing
           protein [Actinomyces viscosus C505]
          Length = 203

 Score = 37.4 bits (85), Expect = 0.97,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 21/52 (40%)

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +  LP     L         ++L++   G  +  +    M++G +V R +I 
Sbjct: 1   MACLPVVGLGLGMLVGADPASLLLDGGLGSAVGALGVGLMVVGHLVTRRLIR 52


>gi|291616286|ref|YP_003519028.1| HofC [Pantoea ananatis LMG 20103]
 gi|291151316|gb|ADD75900.1| HofC [Pantoea ananatis LMG 20103]
          Length = 404

 Score = 37.4 bits (85), Expect = 1.00,   Method: Composition-based stats.
 Identities = 19/178 (10%), Positives = 50/178 (28%), Gaps = 11/178 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           M+    K   K      + +  +   ++AGLP+S +++++    S          ++   
Sbjct: 56  MRRRDWKWQHKI-----DLIRQLATLLKAGLPLSQSLSLLAEGHSQTPWRALMLALQ--- 107

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
               L+            Q        +    +L G L      L++    ++++++KV 
Sbjct: 108 -HQILAGEPFSSALRQWPQIFPPLYPALMEVGELTGQLDVCCEQLAQQQTRQQHLRSKVI 166

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA--FMLIGI 176
                      +  ++   +   V                      +  +      G 
Sbjct: 167 KALRYPLFILAVALTVTCGMLLFVLPEFVSVYASFNAPLPAFTAAVIGLSERLQAWGF 224



 Score = 34.3 bits (77), Expect = 7.7,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 50/156 (32%), Gaps = 19/156 (12%)

Query: 6   KKRTAKFLDDFPNA--------LDIIVRSVR----AGLPVSDAVAVIVGQSSDPVRSEFR 53
           ++R  + L   P          L  I   ++    AGL +   +       S  +  +  
Sbjct: 248 QRREQRVLMHIPIVGGLWQGNQLTQIYSVLQLTQQAGLTLLQGLEAAKVTLSSRLWQDAI 307

Query: 54  RVIETQHLGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112
           R+++        L  ++S    + P        + +    +  G L   LA L+     +
Sbjct: 308 RLLQNHIAQGNPLYLALSNHPLFSP------LCSQLIQVGEEAGALDVMLARLAEWHEGQ 361

Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
             M+A   A S+E      I G +   V  +     
Sbjct: 362 TLMRADNLAASLEPVMMVVIGGIVGTLVIAMYLPVF 397


>gi|317027811|ref|XP_001400044.2| AT DNA binding protein [Aspergillus niger CBS 513.88]
          Length = 1192

 Score = 37.4 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/119 (10%), Positives = 35/119 (29%), Gaps = 13/119 (10%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSD--AVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
             +    F +    + + ++AGL +    A   +  +     ++E   V        +  
Sbjct: 563 RKRLEHVFGDLTPQVQQELQAGLALGQELAKRRLEREMEQRRQTELEEVTAENTARETRE 622

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            S S                 +   +  G   +     +    R+R+ +  ++Q  +  
Sbjct: 623 WSGSSSPHQ-----------TLPETTDYGTPGTFMKRRMEEWQREREAISREIQMANSS 670


>gi|134056972|emb|CAK44319.1| unnamed protein product [Aspergillus niger]
          Length = 1271

 Score = 37.4 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/119 (10%), Positives = 35/119 (29%), Gaps = 13/119 (10%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSD--AVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
             +    F +    + + ++AGL +    A   +  +     ++E   V        +  
Sbjct: 642 RKRLEHVFGDLTPQVQQELQAGLALGQELAKRRLEREMEQRRQTELEEVTAENTARETRE 701

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            S S                 +   +  G   +     +    R+R+ +  ++Q  +  
Sbjct: 702 WSGSSSPHQ-----------TLPETTDYGTPGTFMKRRMEEWQREREAISREIQMANSS 749


>gi|225866225|ref|YP_002751603.1| comG operon protein 2 [Bacillus cereus 03BB102]
 gi|225787671|gb|ACO27888.1| comG operon protein 2 [Bacillus cereus 03BB102]
          Length = 343

 Score = 37.4 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 7/132 (5%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
                +   +  GL V +A+ +++ Q      + E  R+      G  L   I++     
Sbjct: 212 YFATQLSGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIAGEPLQSIIAKSG--- 268

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
                    + I    Q  GNL+  L + S ++ ++   K K   + ++      I G +
Sbjct: 269 ---YYEEELSYIITHGQANGNLAIELGDYSDLIMEKMEQKIKRMLVIIQPILFTCIGGIV 325

Query: 137 PFCVSTLVYFTS 148
                 ++    
Sbjct: 326 VLMYLAMIMPMF 337


>gi|196046275|ref|ZP_03113501.1| comG operon protein 2 [Bacillus cereus 03BB108]
 gi|196022745|gb|EDX61426.1| comG operon protein 2 [Bacillus cereus 03BB108]
          Length = 343

 Score = 37.4 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 7/132 (5%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
                +   +  GL V +A+ +++ Q      + E  R+      G  L   I++     
Sbjct: 212 YFATQLSGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIAGEPLQSIIAKSG--- 268

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
                    + I    Q  GNL+  L + S ++ ++   K K   + ++      I G +
Sbjct: 269 ---YYEEELSYIITHGQANGNLAIELGDYSDLIMEKMEQKIKRMLVIIQPILFTCIGGIV 325

Query: 137 PFCVSTLVYFTS 148
                 ++    
Sbjct: 326 VLMYLAMIMPMF 337


>gi|209527066|ref|ZP_03275581.1| type II secretion system protein [Arthrospira maxima CS-328]
 gi|209492494|gb|EDZ92834.1| type II secretion system protein [Arthrospira maxima CS-328]
          Length = 314

 Score = 37.4 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 59/164 (35%), Gaps = 17/164 (10%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   + +GL V  ++ VI  +S+  +     +VI++   G  LS +  R  R        
Sbjct: 29  LAVLLESGLTVYQSLIVIAKKSNPRLGRYLGKVIKSLGRGEDLSVAFRRAPRIFDW---- 84

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
            ++  +   +   G L E L  L+  +  ++  +         A A+      L      
Sbjct: 85  -WTASLLDIAATSGALPEMLLQLA-EIEKQQTHRQNFYRSVTIAAATTAFSLLLLLATIL 142

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM----VMRLM 182
             +  +       +ND    M +     FM+  ++    ++R +
Sbjct: 143 YTHEAN-------LNDWLLWMFIAGVVGFMVYKLIPRLPLIRRI 179


>gi|328954942|ref|YP_004372275.1| Type II secretion system F domain protein [Coriobacterium glomerans
           PW2]
 gi|328455266|gb|AEB06460.1| Type II secretion system F domain protein [Coriobacterium glomerans
           PW2]
          Length = 221

 Score = 37.4 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 45/126 (35%), Gaps = 1/126 (0%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAV-IVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +    +DI+   + AGL    A+ +    +++   R   +  +  +    +   +++   
Sbjct: 80  EVSEMIDIVRLGLSAGLSFDAALELFCANRATSLARRMAQASLAWRIGSATRETALAGAA 139

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
             +  + +  F+  +S    LG  L+E LA  SR +R     + +        K      
Sbjct: 140 TDLGARSLESFAVAVSQALALGAPLTETLAGQSREIRAAHRAEVERDIERAPIKLLIPTS 199

Query: 134 GSLPFC 139
             +   
Sbjct: 200 ALILPA 205


>gi|217961733|ref|YP_002340303.1| comG operon protein 2 [Bacillus cereus AH187]
 gi|222097686|ref|YP_002531743.1| comg operon protein 2 [Bacillus cereus Q1]
 gi|217066668|gb|ACJ80918.1| comG operon protein 2 [Bacillus cereus AH187]
 gi|221241744|gb|ACM14454.1| comG operon protein 2 [Bacillus cereus Q1]
          Length = 343

 Score = 37.4 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 7/132 (5%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
                +   +  GL V +A+ +++ Q      + E  RV      G  L   I++     
Sbjct: 212 YFATQLSSLLHGGLSVLEALTIMMEQKYQPFFQYEAGRVKHQLIAGEPLQSIIAKSG--- 268

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
                    + I    Q  GNL+  L + S ++ ++   K K   + ++      I   +
Sbjct: 269 ---YYEEELSYIITHGQANGNLAIELGDYSDLIMEKMEQKIKRMLVIIQPILFTCIGAIV 325

Query: 137 PFCVSTLVYFTS 148
                 ++    
Sbjct: 326 VLMYLAMIMPMF 337


>gi|55378674|ref|YP_136524.1| hypothetical protein rrnAC1950 [Haloarcula marismortui ATCC 43049]
 gi|55231399|gb|AAV46818.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 559

 Score = 37.4 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 61/190 (32%), Gaps = 14/190 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQ 59
           +  +   R A      P A+  +           + +  +  Q +       FRR +   
Sbjct: 59  LSWVASARRADIAATLPGAVRYLRVLASGTHDRREMLRAVAEQDAYGETAVAFRRALNQG 118

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTV-ISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            L  SL   I R+    P +++     +     +       E    +   L   +  +  
Sbjct: 119 ILTGSLDTGIERVASETPSRDLLAPFLLKFREHANQSAEALEGYLEMEGRLLSHEQSRQH 178

Query: 119 VQ-----ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG------HMLLGV 167
            +      L  E      ++ +L   + T++   +PG  + +   P G       ++ G 
Sbjct: 179 ERATGYLELLAELFVVLLVLPALVVLIVTVMGILAPGLSDPV-ATPLGETTVRAIVVYGS 237

Query: 168 AAAFMLIGIM 177
           AA  M  G++
Sbjct: 238 AAFVMAAGLL 247


>gi|291565892|dbj|BAI88164.1| type II secretion system protein F domain protein [Arthrospira
           platensis NIES-39]
          Length = 298

 Score = 37.0 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 17/164 (10%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   + +GL V  ++ VI  +S+  +     +VI++   G  LS +  R  R        
Sbjct: 13  LAVLLESGLTVYQSLIVIAKKSNPRLGRYLGKVIKSLGRGEDLSVAFRRAPRIFDW---- 68

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
            ++  +   +   G L E L  L+  +  ++  +         A A+      L      
Sbjct: 69  -WTASLLDIAATSGALPEMLLQLA-EIEKQQTHRQNFYRSVTIAAATTAFSLLLLLATIL 126

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM----VMRLM 182
             +  +       +ND    M L     FM+  ++    ++R +
Sbjct: 127 YTHEAN-------LNDWLLWMFLAGVVGFMVYKLIPRLPLIRRI 163


>gi|325284396|ref|YP_004256936.1| Type II secretion system F domain-containing protein [Deinococcus
           proteolyticus MRP]
 gi|324316460|gb|ADY27573.1| Type II secretion system F domain protein [Deinococcus
           proteolyticus MRP]
          Length = 412

 Score = 37.0 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/139 (9%), Positives = 39/139 (28%), Gaps = 6/139 (4%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESIS 70
            L         +   +  G+  + A+ +    + +  +             G  L E + 
Sbjct: 272 LLSALSRISRTLATMLENGMSNTQAIELSARAAGNAVLADIMLEGKRHIEHGGKLFEVLE 331

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           R        E     T +    +    L+  +  ++     +   +A+  A  +    + 
Sbjct: 332 RYP-----SEFPATITGMVETGEESAQLAPMIDRIADFYESQVESEARNLAQRINPILTV 386

Query: 131 WIIGSLPFCVSTLVYFTSP 149
            +   +   +  ++   S 
Sbjct: 387 GLALVVGVIMMAVMAPMSA 405


>gi|228929286|ref|ZP_04092313.1| ComG operon protein 2 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228947957|ref|ZP_04110244.1| ComG operon protein 2 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229123760|ref|ZP_04252955.1| ComG operon protein 2 [Bacillus cereus 95/8201]
 gi|228659895|gb|EEL15540.1| ComG operon protein 2 [Bacillus cereus 95/8201]
 gi|228811944|gb|EEM58278.1| ComG operon protein 2 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228830576|gb|EEM76186.1| ComG operon protein 2 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 315

 Score = 37.0 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 7/132 (5%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
                +   +  GL V +A+ +++ Q      + E  R+      G  L   I++     
Sbjct: 184 YFATQLSGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIAGEPLQSIIAKSG--- 240

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
                    + I    Q  GNL+  L + S ++ ++   K K   + ++      I G +
Sbjct: 241 ---YYEEELSYIITHGQANGNLAIELGDYSDLIMEKMEQKIKRMLVIIQPILFTCIGGIV 297

Query: 137 PFCVSTLVYFTS 148
                 ++    
Sbjct: 298 VLMYLAMIMPMF 309


>gi|227541577|ref|ZP_03971626.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227182545|gb|EEI63517.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 213

 Score = 37.0 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 37/113 (32%)

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            + +     +      + SV    G  L+  L ++   +  +     +  A       +A
Sbjct: 96  ALYQPEKAPDSPQVRALGSVAETYGVPLAGLLESVQATMDRQLQHDKQTVAQLQGPITTA 155

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            I+ +LP     +        +  L+    G ++L      +  G++    +I
Sbjct: 156 GILTALPVIGIIMGAAIGADSVTYLLGGGTGGIVLVAGTGCIAAGVLWSARII 208


>gi|217969314|ref|YP_002354548.1| type II secretion system protein [Thauera sp. MZ1T]
 gi|217506641|gb|ACK53652.1| type II secretion system protein [Thauera sp. MZ1T]
          Length = 400

 Score = 37.0 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/179 (11%), Positives = 59/179 (32%), Gaps = 6/179 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLS 66
           R      +       + + + AG+P  +++A++    +   ++     +I     GL LS
Sbjct: 53  RRRIARRELIPFCYHLEQLLAAGVPPFESLALLRDAGAEPRLQQVIGALIADVERGLPLS 112

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            + +R          S  +  +    +  G L EA+ ++   L   + + +  + +++  
Sbjct: 113 GAAARQPEA-----FSAVAVSLLRAGEQAGRLPEAIRDIGAALAQEEELASHARRIAIYP 167

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              A ++ +        V       +            + V  +  +       L++  
Sbjct: 168 AIVATVLLAAVVVALIHVVPELERLLRGTGQRLPLQTRILVGLSAAVRDWGWAMLLVTL 226


>gi|168186176|ref|ZP_02620811.1| bacterial type II secretion system protein F domain [Clostridium
           botulinum C str. Eklund]
 gi|169295777|gb|EDS77910.1| bacterial type II secretion system protein F domain [Clostridium
           botulinum C str. Eklund]
          Length = 396

 Score = 37.0 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 44/128 (34%), Gaps = 5/128 (3%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           +  +   + +G+ +  A+ +I+    + +    + V    ++   +S + S     M   
Sbjct: 266 IQSLSILLSSGISLVSALDIILNSVDNKIVK-NKIVNVISNIKEGMSFADSLKREKM--- 321

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
             + F   +    +  GN+ E + N   I  +           S+E      +   + F 
Sbjct: 322 -FNEFFICMISVGEKIGNIEELIDNAVTIKEEDIESLTNKLIKSIEPVTILMLGLIVTFI 380

Query: 140 VSTLVYFT 147
           +  ++   
Sbjct: 381 MMNILLPM 388


>gi|170016619|ref|YP_001727538.1| Type II secretory pathway, component PulF [Leuconostoc citreum
           KM20]
 gi|169803476|gb|ACA82094.1| Type II secretory pathway, component PulF [Leuconostoc citreum
           KM20]
          Length = 338

 Score = 37.0 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 58/169 (34%), Gaps = 22/169 (13%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   +++G  ++ ++  +               +        LS+    +      
Sbjct: 15  FFQSLGALLQSGYDMAQSLDTL--------------FLAHHSWRSWLSDIQKDLAAGQSF 60

Query: 79  QEVSFFSTVI-----SVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
            +       +        +   GNLSE+L  + + LR  +  K K++ +         I+
Sbjct: 61  SDSLRPYVSLDILLQLRLADQHGNLSESLILIGKNLRQIQRQKNKIKQVMRYPMILLIIL 120

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGIMVM 179
           G+L   +   +      + NV +++ +   +     V    +++ +MVM
Sbjct: 121 GALLVGIKYFISPILNQWQNVDMSENKSLFVSMPFVVTTILLIVSVMVM 169


>gi|251788265|ref|YP_003002986.1| type IV pilin biogenesis protein [Dickeya zeae Ech1591]
 gi|247536886|gb|ACT05507.1| type II secretion system protein [Dickeya zeae Ech1591]
          Length = 401

 Score = 37.0 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 52/167 (31%), Gaps = 6/167 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                +  +   ++AGLP+ DA+ ++  Q           +++   L +S   ++S +  
Sbjct: 60  QLAIIIRQLATLLQAGLPLLDALDLLGRQHEKAGWRC---LLQEIRLQVSQGRALSEV-L 115

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                      + +    +L G L E  A L+     ++ +   V            +  
Sbjct: 116 SDYPAAFPVMCSSLISVGELTGKLDECCARLANYQDMQRQLTGAVIKALRYPAFVIAVGM 175

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVM 179
            +   +  LV                     LL ++      G++ +
Sbjct: 176 MVTLLMLMLVLPEFAELYASFDAPLPWLTRTLLALSDVLGRYGVLFI 222


>gi|110667162|ref|YP_656973.1| hypothetical protein HQ1189A [Haloquadratum walsbyi DSM 16790]
 gi|109624909|emb|CAJ51319.1| conserved hypothetical protein [Haloquadratum walsbyi DSM 16790]
          Length = 611

 Score = 37.0 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 51/154 (33%), Gaps = 4/154 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLG 62
            ++K+ A       +A  +I R V AG  V  ++      +     + F+        L 
Sbjct: 360 AVRKQVADIESGLADATAVIGRRVGAGEAVETSLTAAADATIGETSTVFKTAAGVQHRLR 419

Query: 63  LSLSESI---SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           + + ++       +  +P       + +I V ++ G    E L  L+  LR  +  ++  
Sbjct: 420 VDIQQAFLGPYGALSDVPSDRARATAVLIGVAAREGRPAGETLQTLADHLRTVQQTESAA 479

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153
           +        +     +L   +      +    M 
Sbjct: 480 RRELASITGTLSHTAALFGPLVGGATVSMATKMA 513


>gi|225157634|ref|ZP_03725024.1| Type II secretory pathway component PulF-like protein [Opitutaceae
           bacterium TAV2]
 gi|224802701|gb|EEG20954.1| Type II secretory pathway component PulF-like protein [Opitutaceae
           bacterium TAV2]
          Length = 321

 Score = 37.0 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 34/118 (28%), Gaps = 5/118 (4%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  +      +    +   + AG P+ DA       S  P      R I     G  L  
Sbjct: 179 RRYRREQALADFCFALGNLLDAGAPIGDAWIAAGRSSRSPALIAAARSIRDTVQGGGLPG 238

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           +        P          +    +  G L   +  L+ + +D    + K+ +L   
Sbjct: 239 TRLEEFSCFPDD-----FVTMYRTGETAGQLDSNMIRLAGLHQDYAGARLKMASLFYP 291


>gi|329943284|ref|ZP_08292058.1| bacterial type II secretion system F domain protein [Chlamydophila
           psittaci Cal10]
 gi|332287862|ref|YP_004422763.1| putative general secretion pathway protein F [Chlamydophila
           psittaci 6BC]
 gi|313848434|emb|CBY17438.1| general secretion pathway protein F [Chlamydophila psittaci RD1]
 gi|325507373|gb|ADZ19011.1| putative general secretion pathway protein F [Chlamydophila
           psittaci 6BC]
 gi|328814831|gb|EGF84821.1| bacterial type II secretion system F domain protein [Chlamydophila
           psittaci Cal10]
 gi|328915124|gb|AEB55957.1| general secretion pathway protein F, putative [Chlamydophila
           psittaci 6BC]
          Length = 391

 Score = 37.0 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 50/162 (30%), Gaps = 4/162 (2%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R      +       ++  +R+GLP+ + ++ +  Q      S    V      G    
Sbjct: 48  RRVRLKNSELIIFSRQMLLLLRSGLPLYETLSSLRDQYQGQALSGLLTVFMENLRGGG-- 105

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
                    M       F     +  +  GNL   L N+  +L +R+ M  K+ A     
Sbjct: 106 --SLSQAMAMYPGIFDNFYRSAVLAGESVGNLEGCLQNIIIVLEEREQMTKKLTAALSYP 163

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168
                    +     T V  +       +  +    ++ G++
Sbjct: 164 IVLLVFSLVVILFFLTGVIPSLKETFENMEPNTLTSIVFGLS 205


>gi|227487256|ref|ZP_03917572.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227092914|gb|EEI28226.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51867]
          Length = 213

 Score = 37.0 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 37/113 (32%)

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            + +     +      + SV    G  L+  L ++   +  +     +  A       +A
Sbjct: 96  ALYQPEKAPDSPQVRALGSVAETYGIPLAGLLESVQATMDRQLQHDKQTVAQLQGPITTA 155

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            I+ +LP     +        +  L+    G ++L      +  G++    +I
Sbjct: 156 GILTALPVIGIIMGAAIGADSVTYLLGGGTGGIVLVAGTGCIAAGVLWSARII 208


>gi|107099846|ref|ZP_01363764.1| hypothetical protein PaerPA_01000866 [Pseudomonas aeruginosa PACS2]
 gi|116052610|ref|YP_792925.1| type IV B pilus protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|32481692|gb|AAP84206.1| PilR2 [Pseudomonas aeruginosa PA14]
 gi|37955693|gb|AAP22532.1| PilR [Pseudomonas aeruginosa]
 gi|115587831|gb|ABJ13846.1| type IV B pilus Protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 359

 Score = 37.0 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 57/174 (32%), Gaps = 10/174 (5%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHLGLSL 65
           R  +         + +   +  G+P+ DAVA +                +   + L    
Sbjct: 19  RKERLQ-----FYESMSTLLENGVPLKDAVAEVHKIFAHEGQHPFHPVAIASREALMGLS 73

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           +         + L         +    ++ GNL +A+ +   ++  +  ++A +    + 
Sbjct: 74  NGKRLATAMALYLPAQER---ALIEAGEMSGNLVQAMGDAVSLVEAQARIRATIWQALLY 130

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             A + ++  L   V+  +  +     + +        L  +A+     GI V+
Sbjct: 131 PSALSAMMVFLLCIVAYRMVPSLARLSDPVTWTGPLATLNAIASFVTGPGIYVL 184


>gi|323527413|ref|YP_004229566.1| Type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1001]
 gi|323384415|gb|ADX56506.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1001]
          Length = 409

 Score = 37.0 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 51/156 (32%), Gaps = 2/156 (1%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   +RAGLP++ A   ++ Q+    R    R++ T    ++ +            
Sbjct: 73  FTRQLASLLRAGLPLAPA-LDLLAQAPGSRRMGMPRIVGTLARDIT-AGLRFSAALQRHP 130

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
            + +     +    +  G L+  LA ++         ++KV+A      A   +  ++  
Sbjct: 131 AQFNALYCQLVEVGEAAGALAGVLARIADDRERAAAQRSKVRAALTYPLAILLLALAITA 190

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
            +   V  T     +             +A +  + 
Sbjct: 191 ALLVWVVPTFKQIFDGFGARLPAPTQFVLALSSGVA 226


>gi|228935563|ref|ZP_04098379.1| ComG operon protein 2 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229186483|ref|ZP_04313646.1| ComG operon protein 2 [Bacillus cereus BGSC 6E1]
 gi|228596997|gb|EEK54654.1| ComG operon protein 2 [Bacillus cereus BGSC 6E1]
 gi|228824101|gb|EEM69917.1| ComG operon protein 2 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 315

 Score = 37.0 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 7/132 (5%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
                +   +  GL V +A+ +++ Q      + E  R+      G  L   I++     
Sbjct: 184 YFATQLSGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIAGEPLQSIIAKSG--- 240

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
                    + I    Q  GNL+  L + S ++ ++   K K   + ++      I G +
Sbjct: 241 ---YYEEELSYIITHGQANGNLAIELGDYSDLIMEKMEQKIKRMLVIIQPILFTCIGGIV 297

Query: 137 PFCVSTLVYFTS 148
                 ++    
Sbjct: 298 VLMYLAMIMPMF 309


>gi|119898387|ref|YP_933600.1| general secretion pathway protein F [Azoarcus sp. BH72]
 gi|119670800|emb|CAL94713.1| general secretion pathway protein F [Azoarcus sp. BH72]
          Length = 390

 Score = 37.0 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/134 (11%), Positives = 41/134 (30%), Gaps = 6/134 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                   +   +  G+PV  A+ ++ G  +  +R+     I+    G   + +++    
Sbjct: 256 QLARFYRTLGMLLSGGIPVVPALGMVAGLLTHGLRASLDGAIDRVREGRGFAWTLASAGL 315

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
             P       +  +    +  GNL E L   +    +    + +            +I  
Sbjct: 316 TTP------VALRMLEVGERAGNLGEMLTRAAEFHEEDTARQVEWLTRLFGPLLMLFIGC 369

Query: 135 SLPFCVSTLVYFTS 148
           ++   V  +     
Sbjct: 370 AIGLIVVLMYLPIF 383


>gi|229031891|ref|ZP_04187879.1| ComG operon protein 2 [Bacillus cereus AH1271]
 gi|228729509|gb|EEL80498.1| ComG operon protein 2 [Bacillus cereus AH1271]
          Length = 330

 Score = 37.0 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 7/132 (5%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
                +   +  GL V +A+ +++ Q      + E  R+      G  L   I++     
Sbjct: 199 YFATQLSGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIAGEPLQSIIAKSG--- 255

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
                    + I    Q  GNL+  L + S ++ ++   K K   + ++      I G +
Sbjct: 256 ---YYEEELSYIITHGQANGNLAIELGDYSDLIMEKMEQKVKRMLVIIQPILFTCIGGMI 312

Query: 137 PFCVSTLVYFTS 148
                 ++    
Sbjct: 313 VLMYLAMIMPMF 324


>gi|284166668|ref|YP_003404947.1| type II secretion system F domain protein [Haloterrigena turkmenica
           DSM 5511]
 gi|284016323|gb|ADB62274.1| Type II secretion system F domain protein [Haloterrigena turkmenica
           DSM 5511]
          Length = 577

 Score = 37.0 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/166 (9%), Positives = 44/166 (26%), Gaps = 2/166 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR--RVIETQHLGLS 64
           ++  +    F   L  I       +   +    +  +      +E     V        S
Sbjct: 91  RKRKQVRQRFHLFLTHITILSMTNINHVEIFRTLAEEDEYDALAEEMGYLVALVDTWNQS 150

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L ++     +      ++ F   ++     G  +SE L +    +  +   + +     +
Sbjct: 151 LDDACRLRAKQTTSPLLTDFLERLAYTVGGGQQISEFLMDEQDTIIQQFVTRYESDLAKL 210

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           +     ++   L      +     P  +        G  +   A  
Sbjct: 211 DVMKELYMSMMLSVAFILVFAIVLPILIGTSPTLLIGGTIAMFAIV 256


>gi|317498623|ref|ZP_07956916.1| bacterial type II secretion system protein F domain-containing
           protein [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894110|gb|EFV16299.1| bacterial type II secretion system protein F domain-containing
           protein [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 434

 Score = 37.0 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/104 (10%), Positives = 35/104 (33%), Gaps = 13/104 (12%)

Query: 5   IKKRTAKFLD---DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS----------E 51
            ++R         ++P  ++ ++  +  G+ V  A+  +  +     R           +
Sbjct: 273 KEQRIQTLEQSMVEYPQIIEHLILFLGTGMSVVAALEAVATEYEKEQRRGNKKEIFVYEQ 332

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG 95
            ++       G+  +++   M + + L      S ++      G
Sbjct: 333 IKKTCRQISFGVPQTKAFGEMGKKIGLSSYQKLSVLLVQSITRG 376


>gi|33862291|ref|NP_893851.1| pili biogenesis protein [Prochlorococcus marinus str. MIT 9313]
 gi|33640404|emb|CAE20193.1| pili biogenesis protein [Prochlorococcus marinus str. MIT 9313]
          Length = 426

 Score = 37.0 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/135 (8%), Positives = 41/135 (30%), Gaps = 5/135 (3%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
                I    ++AG+P+  ++ +    + + + S+      T      L          +
Sbjct: 293 AQFCRIFSSLIKAGVPILMSLEIASETAGNAIISDAILESRTLVQEGVL-----LSAALI 347

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
             + +   +  +    +  G + + L+ ++    D  +   K     +E      +   +
Sbjct: 348 RQKVLPDMALNMLAIGEETGEMDQMLSKVADFYEDEVSSSVKTLTSMLEPAMIVVVGVIV 407

Query: 137 PFCVSTLVYFTSPGY 151
              +  +       +
Sbjct: 408 GSILLAMYLPMFTVF 422


>gi|118479420|ref|YP_896571.1| comG operon protein 2 [Bacillus thuringiensis str. Al Hakam]
 gi|118418645|gb|ABK87064.1| comG operon protein 2 [Bacillus thuringiensis str. Al Hakam]
          Length = 345

 Score = 37.0 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 7/132 (5%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
                +   +  GL V +A+ +++ Q      + E  R+      G  L   I++     
Sbjct: 214 YFATQLSGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIAGEPLQSIIAKSG--- 270

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
                    + I    Q  GNL+  L + S ++ ++   K K   + ++      I G +
Sbjct: 271 ---YYEEELSYIITHGQANGNLAIELGDYSDLIMEKMEQKIKRMLVIIQPILFTCIGGIV 327

Query: 137 PFCVSTLVYFTS 148
                 ++    
Sbjct: 328 VLMYLAMIMPMF 339


>gi|307595210|ref|YP_003901527.1| type II secretion system F domain-containing protein [Vulcanisaeta
           distributa DSM 14429]
 gi|307550411|gb|ADN50476.1| Type II secretion system F domain protein [Vulcanisaeta distributa
           DSM 14429]
          Length = 302

 Score = 37.0 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 58/156 (37%), Gaps = 2/156 (1%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSES 68
            + L D P  + +I   + +G P+     ++       +       + +      ++ E 
Sbjct: 77  NEILVDMPAVVRVIRDGLGSGQPLVGVAEMLTRVGKGRLGRIIAEAITKESMGITTMKEG 136

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           ++ + R +    ++  + ++    + G  L E L    + L D  + + +         A
Sbjct: 137 LAEVSRELGNNYLAVLAVILDTAIRSGARLQETLDMAYKSLEDMVSYQLEKANQVKPYLA 196

Query: 129 SAWIIGSLPFCVS-TLVYFTSPGYMNVLINDPRGHM 163
             +++ ++   ++  ++Y   P    + I+   G +
Sbjct: 197 LIYVVMAIYVVLAGIIIYLMMPSIGKIAISTSAGAI 232


>gi|229140977|ref|ZP_04269521.1| ComG operon protein 2 [Bacillus cereus BDRD-ST26]
 gi|228642553|gb|EEK98840.1| ComG operon protein 2 [Bacillus cereus BDRD-ST26]
          Length = 315

 Score = 37.0 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 7/132 (5%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
                +   +  GL V +A+ +++ Q      + E  RV      G  L   I++     
Sbjct: 184 YFATQLSSLLHGGLSVLEALTIMMEQKYQPFFQYEAGRVKHQLIAGEPLQSIIAKSG--- 240

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
                    + I    Q  GNL+  L + S ++ ++   K K   + ++      I   +
Sbjct: 241 ---YYEEELSYIITHGQANGNLAIELGDYSDLIMEKMEQKIKRMLVIIQPILFTCIGAIV 297

Query: 137 PFCVSTLVYFTS 148
                 ++    
Sbjct: 298 VLMYLAMIMPMF 309


>gi|167767551|ref|ZP_02439604.1| hypothetical protein CLOSS21_02070 [Clostridium sp. SS2/1]
 gi|167710843|gb|EDS21422.1| hypothetical protein CLOSS21_02070 [Clostridium sp. SS2/1]
          Length = 445

 Score = 37.0 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/104 (10%), Positives = 35/104 (33%), Gaps = 13/104 (12%)

Query: 5   IKKRTAKFLD---DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS----------E 51
            ++R         ++P  ++ ++  +  G+ V  A+  +  +     R           +
Sbjct: 284 KEQRIQTLEQSMVEYPQIIEHLILFLGTGMSVVAALEAVATEYEKEQRRGNKKEIFVYEQ 343

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG 95
            ++       G+  +++   M + + L      S ++      G
Sbjct: 344 IKKTCRQISFGVPQTKAFGEMGKKIGLSSYQKLSVLLVQSITRG 387


>gi|166363152|ref|YP_001655425.1| pilin biogenesis protein [Microcystis aeruginosa NIES-843]
 gi|166085525|dbj|BAG00233.1| pilin biogenesis protein [Microcystis aeruginosa NIES-843]
          Length = 404

 Score = 37.0 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/134 (8%), Positives = 39/134 (29%), Gaps = 7/134 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
              +     R+G+P+  ++ ++     +  + +           G  +S ++ +      
Sbjct: 273 FCRVFGTLTRSGVPILSSLDIVCNTVGNQVIANAIAGAKAEIQQGGMMSLALQKA----- 327

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +  +    +  G L   +  ++    D      K     +E      + G + 
Sbjct: 328 -NVFPPLAIQMISIGEETGELDAMMMKVADFYEDEVEQAVKALTSIIEPLMMIGVAGMVG 386

Query: 138 FCVSTLVYFTSPGY 151
             + ++       +
Sbjct: 387 IILLSMYLPMFKIF 400


>gi|107099889|ref|ZP_01363807.1| hypothetical protein PaerPA_01000910 [Pseudomonas aeruginosa PACS2]
          Length = 128

 Score = 37.0 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 40/126 (31%), Gaps = 5/126 (3%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +  +  AG+P+ DA+  + G + + V            +   +S  +             
Sbjct: 1   MSTTFAAGVPLVDALDSVSGATGNIVFK-----NAVSKIKQDVSTGMQLNFSMRTTSVFP 55

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
             +  ++   +  G+L E L+ ++    +  +         ME    A +   +   +  
Sbjct: 56  NMAIQMTAIGEESGSLDEMLSKVASYYEEEVDNAVDNLTTLMEPMIMAVLGVLVGGLIVA 115

Query: 143 LVYFTS 148
           +     
Sbjct: 116 MYLPIF 121


>gi|261402162|ref|YP_003246386.1| Type II secretion system F domain protein [Methanocaldococcus
           vulcanius M7]
 gi|261369155|gb|ACX71904.1| Type II secretion system F domain protein [Methanocaldococcus
           vulcanius M7]
          Length = 344

 Score = 37.0 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 47/139 (33%), Gaps = 3/139 (2%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGL-SLS 66
             +       AL  +V  +RAG  + + +  I   +    V  E R +I   ++   SL 
Sbjct: 167 RGEVKLQVLFALLYMVSILRAGASLPEVLESISKSEEYGIVSFEVRSIIRDVNIAGYSLV 226

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++ R      +  +      + +     GNL   L  L   +  +  MK       ++ 
Sbjct: 227 EALERAKLRTEIPLLKKLYDQMII-GYNKGNLPMLLEKLYEDIVRQSMMKLDTSKFLIQN 285

Query: 127 KASAWIIGSLPFCVSTLVY 145
             +      L    S ++ 
Sbjct: 286 LGNLAFGVGLILPFSGMIL 304


>gi|21241468|ref|NP_641050.1| type II secretion system protein F [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21106810|gb|AAM35586.1| type II secretion system protein F [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 402

 Score = 37.0 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/129 (10%), Positives = 36/129 (27%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   V +GLP+ + + +      +         + T  +  ++ E  S        
Sbjct: 270 MARTLAIMVNSGLPLMEGLMIAARTVDNRALR-----LATDSMVTAIREGGSLAAAMKRA 324

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    ++   +  G L+  L   +  L              +E      + G +  
Sbjct: 325 GVFPPTLLYMASSGENSGRLAPMLERAADYLEREFEAFTTAAMSLLEPAIIVLLGGVVAV 384

Query: 139 CVSTLVYFT 147
            V +++   
Sbjct: 385 IVLSILLPI 393


>gi|49480953|ref|YP_038303.1| comG operon protein 2 [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49332509|gb|AAT63155.1| comG operon protein 2 [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 343

 Score = 37.0 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 7/132 (5%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
                +   +  GL V +A+ +++ Q      + E  R+      G +L   I++     
Sbjct: 212 YFATQLSGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIAGEALQSIIAKSG--- 268

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
                    + I    Q  GNL+  L + S ++ ++   K K   + ++      I G +
Sbjct: 269 ---YYEEELSYIITHGQANGNLAIELGDYSDLIMEKMEQKMKRMLVIIQPILFTCIGGIV 325

Query: 137 PFCVSTLVYFTS 148
                 ++    
Sbjct: 326 VLMYLAMIMPMF 337


>gi|206977996|ref|ZP_03238882.1| comG operon protein 2 [Bacillus cereus H3081.97]
 gi|206743796|gb|EDZ55217.1| comG operon protein 2 [Bacillus cereus H3081.97]
          Length = 343

 Score = 37.0 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 44/132 (33%), Gaps = 7/132 (5%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
                +   +  GL V +A+ +++ Q      + E  RV      G  L   I++   Y 
Sbjct: 212 YFATQLSSLLHGGLSVLEALTIMMEQKYQPFFQYEAGRVKHQLIAGEPLQSIIAKSGYYE 271

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
                      I    Q  GNL+  L + S ++ ++   K K   + ++      I   +
Sbjct: 272 EEPSY------IITHGQANGNLAIELGDYSDLIMEKMEQKIKRMLVIIQPILFTCIGAIV 325

Query: 137 PFCVSTLVYFTS 148
                 ++    
Sbjct: 326 VLMYLAMIMPMF 337


>gi|153876990|ref|ZP_02004027.1| General secretion pathway protein F [Beggiatoa sp. PS]
 gi|152066546|gb|EDN65973.1| General secretion pathway protein F [Beggiatoa sp. PS]
          Length = 199

 Score = 37.0 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 41/131 (31%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + +G+P+ +A+ +     S+ + R       +    G SL  ++     + P
Sbjct: 68  FTRTLSILIESGVPMLEALQITAQVLSNRLIRQATVEATQKVREGSSLHNALKHSGLFPP 127

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         +    +  G+L + L   + +          V     E      + G + 
Sbjct: 128 MTVY------LIASGESSGHLEQMLERAAIMQERELEALIGVLLGLFEPLLILLMGGIVL 181

Query: 138 FCVSTLVYFTS 148
             V  ++    
Sbjct: 182 TIVLAILMPIF 192


>gi|325663219|ref|ZP_08151669.1| hypothetical protein HMPREF0490_02410 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470673|gb|EGC73903.1| hypothetical protein HMPREF0490_02410 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 394

 Score = 36.6 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 35/130 (26%), Gaps = 9/130 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--------PVRSEFRRVIETQHLGLSLS 66
           D+P  L+  V  + AG+    A   I                  E    +     G S  
Sbjct: 247 DYPEILNKFVLFLGAGMTAKAAWQKISSDYEKGKIMGKERFAYEEMAYTLREMQAGGSEK 306

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANL-SRILRDRKNMKAKVQALSME 125
           E      +         F  ++S   + G      L  L +    + +   AK     + 
Sbjct: 307 ECYEHFGKRCEAVCYMRFGALLSQNLKRGSKGLADLLRLEAVNAFEERKRAAKKAGEEVG 366

Query: 126 AKASAWIIGS 135
            K  A +   
Sbjct: 367 TKLLAPMFFM 376


>gi|325969839|ref|YP_004246031.1| type II secretion system protein [Vulcanisaeta moutnovskia 768-28]
 gi|323709042|gb|ADY02529.1| type II secretion system protein [Vulcanisaeta moutnovskia 768-28]
          Length = 620

 Score = 36.6 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/139 (10%), Positives = 49/139 (35%), Gaps = 1/139 (0%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESI 69
           +   ++   L  +    ++G         +   +          ++++    G+ + E +
Sbjct: 388 EIDREYAEFLRDVTELRKSGFTPEKTFETLRYTRKYGAFDQYLDKMVKQIRYGVPIREVL 447

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
           S ++  +       F+ +++    LGG   + L  L+       +++  ++A     +  
Sbjct: 448 SSIMPKLHSYYSKVFTFLLTETIDLGGASPQVLDMLASFASSIVSVQENMRARLRPLRYV 507

Query: 130 AWIIGSLPFCVSTLVYFTS 148
            +I   +      ++ F+ 
Sbjct: 508 PYIGAIILIVTLVVLIFSV 526


>gi|229494799|ref|ZP_04388555.1| bacterial type II secretion system protein F domain protein
           [Rhodococcus erythropolis SK121]
 gi|229318295|gb|EEN84160.1| bacterial type II secretion system protein F domain protein
           [Rhodococcus erythropolis SK121]
          Length = 189

 Score = 36.6 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 29/65 (44%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           LD++   +RAGLPVS A+  +   +  P+    RRV +   LG     + S        +
Sbjct: 50  LDLLGACLRAGLPVSAAITAMASTAPKPMADSLRRVADLLALGADPDAAWSEAALDPDTE 109

Query: 80  EVSFF 84
            ++  
Sbjct: 110 ALARM 114


>gi|257793110|ref|YP_003186508.1| hypothetical protein Aaci_3123 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257479802|gb|ACV60119.1| hypothetical protein Aaci_3123 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 294

 Score = 36.6 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 50/167 (29%), Gaps = 4/167 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL- 61
             I+ R               V  +R  +P+ +A+  I   ++       RR +      
Sbjct: 129 RRIQARRRDAAWQVRQLKRRFVSLLRRRIPLEEALWQIARDAAAQRTDFGRRFVARMQEA 188

Query: 62  -GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
               L +++  +     + E++ F   I        +L      L   +RD      ++ 
Sbjct: 189 RVRPLGDALHDLAEEFRVPELTRFVQAIRHAE--ANSLGSLADILETQIRDESAQLDELV 246

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
                A      + S+   V  L +     +         G  +LG+
Sbjct: 247 DAEKNAMQLKLRMMSVVMFVYILGWAGYFAFAVFRHQIQTGQGILGL 293


>gi|138896010|ref|YP_001126463.1| ComG operon protein 2 [Geobacillus thermodenitrificans NG80-2]
 gi|134267523|gb|ABO67718.1| ComG operon protein 2 [Geobacillus thermodenitrificans NG80-2]
          Length = 342

 Score = 36.6 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 52/161 (32%), Gaps = 7/161 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               + R +  G P+  A+  +  Q+    R E  R ++    GL L  +I  +      
Sbjct: 14  FFARLGRLLERGYPLGQALEFLAIQAPMKRRLELERCLQQLRAGLPLFAAIEELP----- 68

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
             V   +  +   ++  G+L   +A     L  +     +++           ++  +  
Sbjct: 69  --VDRLAVSLLFFAERHGDLPRGMAEAGAALAQKARFGEQLRRFGRYPLFLFALLIVMLL 126

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            +   +          L  +     LL    A   + ++V+
Sbjct: 127 LMERWLLPQFERTAAALSPENEQTSLLIALIAHAPMALVVI 167


>gi|227529719|ref|ZP_03959768.1| competence protein [Lactobacillus vaginalis ATCC 49540]
 gi|227350385|gb|EEJ40676.1| competence protein [Lactobacillus vaginalis ATCC 49540]
          Length = 336

 Score = 36.6 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/172 (12%), Positives = 61/172 (35%), Gaps = 17/172 (9%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
              L +I   +R+G  +  A+     + S  +    + + +  +L +   +        +
Sbjct: 15  AEWLLLIADLLRSGFSLRHAI-----EFSGAILKRHQILFQEINLAM---QDGKSFAECL 66

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
                      + + ++  G+L E L  + +++  ++  + K+  L         ++ SL
Sbjct: 67  KPHIKPNLYYQL-LFAEQHGSLEECLQEIGKLMLHQEKQRQKLMTLLQYPLILLGLLVSL 125

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLL--------GVAAAFMLIGIMVMR 180
              +   V+     +      +   + LL        G+    +L+G+  ++
Sbjct: 126 MVTLKIFVFPELSQWGTGNSQNWADYYLLEIIAYLSGGILVTSLLVGLRWLK 177


>gi|42783366|ref|NP_980613.1| comG operon protein 2 [Bacillus cereus ATCC 10987]
 gi|42739294|gb|AAS43221.1| comG operon protein 2 [Bacillus cereus ATCC 10987]
          Length = 343

 Score = 36.6 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 7/132 (5%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
                +   +  GL V +A+ +++ Q      + E  RV      G  L   I++     
Sbjct: 212 YFATQLSGLLHGGLSVLEALTIMMEQKYQPFFQYEAGRVKHQLIAGEPLQSIIAKSG--- 268

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
                    + I    Q  GNL+  L + S ++ ++   K K   + ++      I   +
Sbjct: 269 ---YYEEELSYIITHGQANGNLAIELGDYSDLIMEKMEQKIKRMLVIIQPILFTCIGAIV 325

Query: 137 PFCVSTLVYFTS 148
                 ++    
Sbjct: 326 VLMYLAMIMPMF 337


>gi|311065087|ref|YP_003971813.1| hypothetical protein BBPR_1759 [Bifidobacterium bifidum PRL2010]
 gi|310867407|gb|ADP36776.1| Conserved hypothetical protein, TadC-like protein [Bifidobacterium
           bifidum PRL2010]
          Length = 141

 Score = 36.6 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/139 (11%), Positives = 44/139 (31%), Gaps = 1/139 (0%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P  + ++  S+R+G+ V+ ++  +       +      V +  H G S  ++ +     
Sbjct: 3   LPLLIGLLSVSLRSGMSVTRSLEGVGEAVGGALGGGLCAVADALHRGSSWKDAWNAADFG 62

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIG 134
              +  +     +      G +    L   S + +   +    +  A           + 
Sbjct: 63  DYAETSAILRGALEPSWTRGVSPIGRLTTASEQWMEGERTAIEQESASLSVKLLLPTGLC 122

Query: 135 SLPFCVSTLVYFTSPGYMN 153
            LP  V   +  +   ++ 
Sbjct: 123 MLPAFVFLGILPSVMAFVG 141


>gi|240949019|ref|ZP_04753373.1| pili/fimbriae biogenesis protein [Actinobacillus minor NM305]
 gi|240296606|gb|EER47224.1| pili/fimbriae biogenesis protein [Actinobacillus minor NM305]
          Length = 398

 Score = 36.6 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 56/162 (34%), Gaps = 6/162 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLSESISR 71
            ++    L  +   V+A +P+  A+ +I+   +      +   +     LG + S ++ R
Sbjct: 57  SEEITQVLSQLAMLVKAKIPLKSALTMILENCTQIKIYLWLETLIKWIELGYAFSAALGR 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              Y+P QE       +    ++ G L   L N+++   +++    KV+ +         
Sbjct: 117 SETYIPQQE-----IQLIKMGEVSGKLETILQNIAKARTEKEKTLKKVKKILFYPIVVLT 171

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           I  SL   +   +                    +  + +  L
Sbjct: 172 ISFSLSIGLLLFIVPQFAELYGAKDKSLPMITEILFSLSAFL 213


>gi|254442237|ref|ZP_05055713.1| Bacterial type II secretion system protein F domain
           [Verrucomicrobiae bacterium DG1235]
 gi|198256545|gb|EDY80853.1| Bacterial type II secretion system protein F domain
           [Verrucomicrobiae bacterium DG1235]
          Length = 318

 Score = 36.6 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 56/166 (33%), Gaps = 18/166 (10%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
               L+ +   + AG+  S+AV+ +       +      +      G S  E+       
Sbjct: 9   LAEWLEQVSDGLDAGMAASNAVS-LAKTLPSGMSE---GLESGFRAGKSWGEAFEETGLP 64

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
           +   E       +   +++ G L   +  ++   R++  +K +V+               
Sbjct: 65  LSFAEQ-----SMLKAAEVSGRLPAMMRRIAEGRREQAKVKRRVRLALAYPAFLLHFAA- 118

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLL---GVAAAFMLIGIMV 178
               V ++ Y  +    +  ++   G +++    +AA F  I  + 
Sbjct: 119 ---FVFSITYLVNGDTWSFFVS--AGMVVVPVWLLAAFFYSITRVW 159


>gi|21232852|ref|NP_638769.1| type II secretion system protein F [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767077|ref|YP_241839.1| type II secretion system protein F [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21114680|gb|AAM42693.1| type II secretion system protein F [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572409|gb|AAY47819.1| type II secretion system protein F [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 398

 Score = 36.6 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 39/130 (30%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMP 77
               +   V +GLP+ + + +      +         ++     G SL  ++ R   + P
Sbjct: 266 MARTLAIMVNSGLPLMEGLMIAARTVDNHALRLATDSMVTAIREGGSLGAAMKRAGVFPP 325

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     ++   +  G L+  L   +  L              +E      + G + 
Sbjct: 326 ------TLLYMASSGENSGRLAPMLERAADYLEREFESFTTAAMSLLEPLIIVLLGGVVA 379

Query: 138 FCVSTLVYFT 147
             V +++   
Sbjct: 380 VIVLSILLPI 389


>gi|163785888|ref|ZP_02180344.1| bacterial type II secretion system protein F [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159878844|gb|EDP72892.1| bacterial type II secretion system protein F [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 197

 Score = 36.6 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/119 (10%), Positives = 39/119 (32%), Gaps = 7/119 (5%)

Query: 31  LPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS 89
           + ++ A+ ++  Q       E   +       G S++++   +      +    F   + 
Sbjct: 82  VHITSALEIVAKQQEGAELKEKLLKTKALIAEGKSIADAFEEV------KIFPKFLIEMI 135

Query: 90  VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
              +  G LS    + S  +  + + K+++    +       +       +  +V  T 
Sbjct: 136 KAGEASGALSSIFLSASNFIEKQNSFKSQIINALIYPSIVIGVGFLALIIIMNVVVPTV 194


>gi|188990169|ref|YP_001902179.1| type II protein secretion system protein F [Xanthomonas campestris
           pv. campestris str. B100]
 gi|167731929|emb|CAP50115.1| type II protein secretion system protein F [Xanthomonas campestris
           pv. campestris]
          Length = 398

 Score = 36.6 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 39/130 (30%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMP 77
               +   V +GLP+ + + +      +         ++     G SL  ++ R   + P
Sbjct: 266 MARTLAIMVNSGLPLMEGLMIAARTVDNHALRLATDSMVTAIREGGSLGAAMKRAGVFPP 325

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     ++   +  G L+  L   +  L              +E      + G + 
Sbjct: 326 ------TLLYMASSGENSGRLAPMLERAADYLEREFESFTTAAMSLLEPLIIVLLGGVVA 379

Query: 138 FCVSTLVYFT 147
             V +++   
Sbjct: 380 VIVLSILLPI 389


>gi|139438670|ref|ZP_01772154.1| Hypothetical protein COLAER_01155 [Collinsella aerofaciens ATCC
           25986]
 gi|133775750|gb|EBA39570.1| Hypothetical protein COLAER_01155 [Collinsella aerofaciens ATCC
           25986]
          Length = 213

 Score = 36.6 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 48/142 (33%), Gaps = 1/142 (0%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAV-IVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +    +D++   + AGL    A+ +    + S       R  +  Q    +  + +    
Sbjct: 72  EVSEMIDVVRLGLSAGLSFDAALEIFCANRRSVLALRLERACMAWQVGVGTREDELLAAA 131

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R + ++ +  F+  +     LG  L+E LA  SR +R       + +      K      
Sbjct: 132 RDLDVRALETFAITVGQALALGAPLAETLAAQSREIRAAHRAAVEREIERAPIKLLIPTG 191

Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155
             +   +   +     G   ++
Sbjct: 192 TLILPALLLSILGPLLGAGGMM 213


>gi|294146460|ref|YP_003559126.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
 gi|292676877|dbj|BAI98394.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
          Length = 287

 Score = 36.6 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 50/153 (32%), Gaps = 6/153 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSES 68
            + +FP  LD+++  + +G+ +      I    +            ++     G+   ++
Sbjct: 135 IMAEFPFLLDLMLMMLESGISLDQCFRSIARDEAIAVPHHARLIAMLVADLDRGMRYEQA 194

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           + R    + +      + +       G  L+ AL    R    R+   A+     M    
Sbjct: 195 LDRWAARVAVNGAKELAALFRQALFQGVELAPALREFVREFTQRRVANAREA---MGGIT 251

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
              ++  + F +  L        +  + +  RG
Sbjct: 252 VRMVVLMILFFMPALFVVLGGPPVVAIFDTLRG 284


>gi|196248903|ref|ZP_03147603.1| type II secretion system protein [Geobacillus sp. G11MC16]
 gi|196211779|gb|EDY06538.1| type II secretion system protein [Geobacillus sp. G11MC16]
          Length = 342

 Score = 36.6 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 52/161 (32%), Gaps = 7/161 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               + R +  G P+  A+  +  Q+    R E  R ++    GL L  +I  +      
Sbjct: 14  FFTRLGRLLERGYPLGQALEFLAIQAPMKRRLELERCLQQLRAGLPLFAAIEELP----- 68

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
             V   +  +   ++  G+L   +A     L  +     +++           ++  +  
Sbjct: 69  --VDRLAVSLLFFAERHGDLPRGMAEAGAALAQKARFGEQLRRFGRYPLFLFALLIVMLL 126

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            +   +          L  +     LL    A   + ++V+
Sbjct: 127 LMERWLLPQFERTAAALSPENEQTSLLIALIAHAPMALVVI 167


>gi|150399788|ref|YP_001323555.1| hypothetical protein Mevan_1041 [Methanococcus vannielii SB]
 gi|150399793|ref|YP_001323560.1| hypothetical protein Mevan_1047 [Methanococcus vannielii SB]
 gi|150399798|ref|YP_001323565.1| hypothetical protein Mevan_1053 [Methanococcus vannielii SB]
 gi|150012491|gb|ABR54943.1| conserved hypothetical protein [Methanococcus vannielii SB]
 gi|150012496|gb|ABR54948.1| conserved hypothetical protein [Methanococcus vannielii SB]
 gi|150012501|gb|ABR54953.1| conserved hypothetical protein [Methanococcus vannielii SB]
          Length = 198

 Score = 36.6 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 45/102 (44%), Gaps = 1/102 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV-IETQHLG 62
           + + +  KF  + P AL ++V S+ +G  + +A+  ++      V S F ++ +      
Sbjct: 77  MYESKMEKFDSNLPKALYVMVLSLDSGRSIVEAINEVIRSGIPEVDSVFSKIVLLMTEKK 136

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN 104
           LS  +S+  +   +  +     S +I    + GG L+  L  
Sbjct: 137 LSFEDSMMLVSNSLDSKLFRQISRLIIENRKYGGELANTLNM 178


>gi|152988769|ref|YP_001349825.1| type IV B pilus protein [Pseudomonas aeruginosa PA7]
 gi|254244612|ref|ZP_04937934.1| PilR [Pseudomonas aeruginosa 2192]
 gi|126197990|gb|EAZ62053.1| PilR [Pseudomonas aeruginosa 2192]
 gi|150963927|gb|ABR85952.1| type IV B pilus Protein [Pseudomonas aeruginosa PA7]
          Length = 359

 Score = 36.6 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 57/174 (32%), Gaps = 10/174 (5%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHLGLSL 65
           R  +         + +   +  G+P+ DAVA +                +   + L    
Sbjct: 19  RKERLQ-----FYESMSTLLENGVPLKDAVAEVHKIFAHEGQHPFHPVAIASREALMGLS 73

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           +         + L         +    ++ GNL +A+ +   ++  +  ++A +    + 
Sbjct: 74  NGKRLATAMALYLPAQER---ALIEAGEMSGNLVQAMGDAVSLVEAQARIRATIWQALLY 130

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             A + ++  L   V+  +  +     + +        L  +A+     GI V+
Sbjct: 131 PSALSAMMVFLLCIVAYRMVPSLARLSDPVTWTGPLATLNAIASFVTGPGIYVL 184


>gi|307595208|ref|YP_003901525.1| type II secretion system F domain-containing protein [Vulcanisaeta
           distributa DSM 14429]
 gi|307550409|gb|ADN50474.1| Type II secretion system F domain protein [Vulcanisaeta distributa
           DSM 14429]
          Length = 265

 Score = 36.6 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 70/182 (38%), Gaps = 7/182 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLS-- 64
           R++ F     N L I++  + +G+ + + ++ +   +    +  EFR ++     G    
Sbjct: 76  RSSHFERYLINTLMIMIPLIASGVTLEELISTLATIERDPYIAREFRLILRDAREGGMDI 135

Query: 65  ---LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
              L  SISR+      +     +    + + L   L   L  L R   +R     +V  
Sbjct: 136 LTALRASISRVPSRTYGEIFGLIAETYLISANLADVLMLKLEYLVRNKYNRLRSATQVLG 195

Query: 122 LSMEAKASAWIIGSLPFCVSTL-VYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           L ME      ++  +   +  + +    P Y+  ++  P   +++       ++G ++  
Sbjct: 196 LFMEIYLVVALLLPILLVLIVITLSPLGPIYLGPIVLSPTLALIITTLIYSPVMGYVMYI 255

Query: 181 LM 182
           L+
Sbjct: 256 LI 257


>gi|325288256|ref|YP_004264437.1| hypothetical protein Sgly_0062 [Syntrophobotulus glycolicus DSM
           8271]
 gi|324963657|gb|ADY54436.1| hypothetical protein Sgly_0062 [Syntrophobotulus glycolicus DSM
           8271]
          Length = 290

 Score = 36.6 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/150 (11%), Positives = 46/150 (30%), Gaps = 2/150 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           +  K   + P  +  I + ++A   V   +      + +   +E   +        S   
Sbjct: 141 KRGKIEQELPRFVATITQELKASRDVLSMLENFKRNAGEDFSAELDILTADMRS-SSYEA 199

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +++R         +S  +  +    +           L+  ++  +  + K QA+ +  K
Sbjct: 200 ALTRFESRFNSPMLSDITRGLIGVLRGDDG-GMYFQMLAHDMKQLELQRLKAQAMKIPPK 258

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
              +    L   + T +       +  L  
Sbjct: 259 IRVFSFAMLMCFLMTYMAIIVYEIITSLGG 288


>gi|89892802|ref|YP_516289.1| hypothetical protein DSY0056 [Desulfitobacterium hafniense Y51]
 gi|89332250|dbj|BAE81845.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 256

 Score = 36.6 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/150 (11%), Positives = 46/150 (30%), Gaps = 2/150 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           +  K   + P  +  I + ++A   V   +      + +   +E   +        S   
Sbjct: 107 KRGKIEQELPRFVATITQELKASRDVLSMLENFKRNAGEDFAAELDILTADMRS-SSYEA 165

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +++R         +S  +  +    +           L+  ++  +  + K QA+ +  K
Sbjct: 166 ALTRFEARFNSPMLSDITRGLIGVLRGDDG-GMYFQMLAHDMKQLELQRLKAQAMKIPPK 224

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
              +    L   + T +       +  L  
Sbjct: 225 IRVFSFAMLMCFLMTYMAIIVYEIVTSLGG 254


>gi|78046314|ref|YP_362489.1| type II secretion system protein F [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78034744|emb|CAJ22389.1| type II secretion system protein F [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 400

 Score = 36.6 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 40/130 (30%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMP 77
               +   V +GLP+ + + +      +         ++     G SL+ ++ R   + P
Sbjct: 268 MARTLAIMVNSGLPLMEGLMIAARTVDNRALRLATDGMVTAIREGGSLAAAMKRAGVFPP 327

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     ++   +  G L+  L   +  L              +E      + G + 
Sbjct: 328 ------TLLYMASSGENSGRLAPMLERAADYLEREFETFTAAAMSLLEPAIIVLLGGVVA 381

Query: 138 FCVSTLVYFT 147
             V +++   
Sbjct: 382 VIVLSILLPI 391


>gi|16081951|ref|NP_394361.1| hypothetical protein Ta0902 [Thermoplasma acidophilum DSM 1728]
 gi|10640179|emb|CAC12031.1| conserved hypothetical membrane protein [Thermoplasma acidophilum]
          Length = 284

 Score = 36.6 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 64/178 (35%), Gaps = 7/178 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIE-TQHL 61
            +K   +      P+AL +      +G+P    ++ + G         E +RV      +
Sbjct: 102 RVKSIKSNIEHVMPDALAVAYGLSLSGVPADTMISELAGIKELGEFAKESQRVNSFMYAM 161

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G     ++ R  +     + S F   I +   L  +L+  L +        +  K+K+  
Sbjct: 162 GYDFLSALERSEKVSASPDFSRFVAGIRLSIILNSDLTAFLRDRLDYYVRVQENKSKLSL 221

Query: 122 LSMEAKASAWIIGSLPFCVSTLVY--FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
            S+   A +++  ++ F +   +     S    +VL        ++ +  +  ++G  
Sbjct: 222 DSLGLAAESYVAVAIAFPILLYLTGSIISIKNSSVLFFVLS---MMVLVVSAAVMGYF 276


>gi|30264314|ref|NP_846691.1| comG operon protein 2 [Bacillus anthracis str. Ames]
 gi|47529759|ref|YP_021108.1| ComG operon protein 2 [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187141|ref|YP_030393.1| comG operon protein 2 [Bacillus anthracis str. Sterne]
 gi|167634651|ref|ZP_02392971.1| comG operon protein 2 [Bacillus anthracis str. A0442]
 gi|170687358|ref|ZP_02878575.1| comG operon protein 2 [Bacillus anthracis str. A0465]
 gi|177655900|ref|ZP_02937092.1| comG operon protein 2 [Bacillus anthracis str. A0174]
 gi|190565781|ref|ZP_03018700.1| comG operon protein 2 [Bacillus anthracis Tsiankovskii-I]
 gi|196041546|ref|ZP_03108838.1| comG operon protein 2 [Bacillus cereus NVH0597-99]
 gi|227817017|ref|YP_002817026.1| comG operon protein 2 [Bacillus anthracis str. CDC 684]
 gi|229600387|ref|YP_002868533.1| comG operon protein 2 [Bacillus anthracis str. A0248]
 gi|254684002|ref|ZP_05147862.1| comG operon protein 2 [Bacillus anthracis str. CNEVA-9066]
 gi|254721836|ref|ZP_05183625.1| comG operon protein 2 [Bacillus anthracis str. A1055]
 gi|254736350|ref|ZP_05194056.1| comG operon protein 2 [Bacillus anthracis str. Western North
           America USA6153]
 gi|254741388|ref|ZP_05199075.1| comG operon protein 2 [Bacillus anthracis str. Kruger B]
 gi|254753977|ref|ZP_05206012.1| comG operon protein 2 [Bacillus anthracis str. Vollum]
 gi|254757848|ref|ZP_05209875.1| comG operon protein 2 [Bacillus anthracis str. Australia 94]
 gi|30258959|gb|AAP28177.1| comG operon protein 2 [Bacillus anthracis str. Ames]
 gi|47504907|gb|AAT33583.1| comG operon protein 2 [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181068|gb|AAT56444.1| comG operon protein 2 [Bacillus anthracis str. Sterne]
 gi|167530103|gb|EDR92838.1| comG operon protein 2 [Bacillus anthracis str. A0442]
 gi|170668553|gb|EDT19299.1| comG operon protein 2 [Bacillus anthracis str. A0465]
 gi|172079933|gb|EDT65038.1| comG operon protein 2 [Bacillus anthracis str. A0174]
 gi|190562700|gb|EDV16666.1| comG operon protein 2 [Bacillus anthracis Tsiankovskii-I]
 gi|196027534|gb|EDX66149.1| comG operon protein 2 [Bacillus cereus NVH0597-99]
 gi|227006721|gb|ACP16464.1| comG operon protein 2 [Bacillus anthracis str. CDC 684]
 gi|229264795|gb|ACQ46432.1| comG operon protein 2 [Bacillus anthracis str. A0248]
          Length = 343

 Score = 36.6 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 7/132 (5%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
                +   +  GL V +A+ +++ Q      + E  R+      G  L   I++     
Sbjct: 212 YFATQLSGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIAGEPLQSIIAK----- 266

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
             +      + I    Q  GNL+  L + S ++ ++   K K   + ++      I G +
Sbjct: 267 -SEYYEEELSYIITHGQANGNLAIELGDYSDLIMEKMERKIKRMLVIIQPILFTCIGGIV 325

Query: 137 PFCVSTLVYFTS 148
                 ++    
Sbjct: 326 VLMYLAMIMPMF 337


>gi|303244213|ref|ZP_07330550.1| Type II secretion system F domain protein [Methanothermococcus
           okinawensis IH1]
 gi|302485340|gb|EFL48267.1| Type II secretion system F domain protein [Methanothermococcus
           okinawensis IH1]
          Length = 559

 Score = 36.6 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 60/176 (34%), Gaps = 6/176 (3%)

Query: 5   IKKRTAKF----LDDFPNALDIIVRSVRA-GLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           + KR          +FP+ L  +  SV A G  + D++  +      P+  +  ++ +  
Sbjct: 317 VAKREESLVIRKEYNFPDFLRSLGDSVSAKGGGMEDSLKYLSSHDFGPLTKDLEQLYKRV 376

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            + +  +++            +  FS +    + LGG+  +A   +    R   N++ K 
Sbjct: 377 SIRIDNNKAWRLFGFETCSYLIQLFSEMFERCTFLGGDPGKASEIIGNNFRKIINLR-KS 435

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           +  S+E  A           ++    +     +N L         +      +  G
Sbjct: 436 KYQSVEQFAGIMYGLGGGLALALYTSYGVAHMVNNLYTSLEIPEAMITVINVIAPG 491


>gi|293603722|ref|ZP_06686141.1| type II secretion pathway protein XcpS [Achromobacter piechaudii
           ATCC 43553]
 gi|292817896|gb|EFF76958.1| type II secretion pathway protein XcpS [Achromobacter piechaudii
           ATCC 43553]
          Length = 397

 Score = 36.6 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/135 (11%), Positives = 44/135 (32%), Gaps = 8/135 (5%)

Query: 29  AGLPVSDAVAVIVG---QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           AGL + +A+  +     + +  +++   +++ + + G  LS+++       P        
Sbjct: 73  AGLALIEALEALSDKAGRGNKALQASLGQLLRSLYQGQPLSKAMEAQPLVYP-----ALL 127

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
                 ++  G L   L          +N++ KV    +       +   +   +   V 
Sbjct: 128 VATVASAEGSGQLPVVLRRYQYYETRIENIRKKVVGALVYPLVVIAVGFGILLFMLFFVV 187

Query: 146 FTSPGYMNVLINDPR 160
                    + + P 
Sbjct: 188 PRFAVVFESMRSLPA 202


>gi|307265192|ref|ZP_07546751.1| Type II secretion system F domain protein [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306919814|gb|EFN50029.1| Type II secretion system F domain protein [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 218

 Score = 36.6 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 7/134 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+P+  A+ V+     + V +E  ++  E    GL LSE + R+  + P
Sbjct: 86  FTRTLGTLISAGVPLMKAMEVVEKVMGNTVVAEGLKKAQEDIKKGLPLSEPLKRIGIFPP 145

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +         +    +  G+L   L   +       +         +E      +   + 
Sbjct: 146 M------VIQMISIGESSGSLDSILNKTADFYDGEVDTAVSQMTTLLEPLIIVMLATVVG 199

Query: 138 FCVSTLVYFTSPGY 151
           F V ++V      Y
Sbjct: 200 FIVISIVMPLFQLY 213


>gi|294666184|ref|ZP_06731439.1| type II secretion system protein F [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604049|gb|EFF47445.1| type II secretion system protein F [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 400

 Score = 36.6 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 40/130 (30%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMP 77
               +   V +GLP+ + + +      +         ++     G SL+ ++ R   + P
Sbjct: 268 MARTLAIMVNSGLPLMEGLMIAARTVDNRALRLATDTMVTAIREGGSLAAALKRAAVFPP 327

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     ++   +  G L+  L   +  L              +E      + G + 
Sbjct: 328 ------TLLYMASSGENSGRLAPMLERAADYLEREFEAFTTAAMSLLEPAIIVLLGGVVA 381

Query: 138 FCVSTLVYFT 147
             V +++   
Sbjct: 382 VIVLSILLPI 391


>gi|171463004|ref|YP_001797117.1| type II secretion system protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171192542|gb|ACB43503.1| type II secretion system protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 280

 Score = 36.6 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 45/133 (33%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
                  +   +++ LP+ DA+ V    S+  +  +F   I  +HL    S   + +   
Sbjct: 142 LTYWCRTLGHLLKSSLPLPDALRVTAQSSNHWLSHDFSAEIFIKHLTRGWSLGDAIIKAD 201

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                    +  +   +   G L++ L   + IL  + + +    + S+E      +   
Sbjct: 202 PRHSLFDLETLQLLRIASESGALADMLQRRATILSSQLSNRLNTLSHSLEPLLIIVVGLI 261

Query: 136 LPFCVSTLVYFTS 148
           +   V  L     
Sbjct: 262 IGSLVIILYLPIF 274


>gi|226303995|ref|YP_002763953.1| hypothetical protein RER_05060 [Rhodococcus erythropolis PR4]
 gi|226183110|dbj|BAH31214.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 194

 Score = 36.6 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           LD++   +RAGLPVS A+  +   +  P+     RV +   LG     + S        +
Sbjct: 55  LDLLGACLRAGLPVSAAITAMASTAPKPMADTLSRVADLLTLGADPDAAWSEAALDPDTE 114

Query: 80  EVSFF 84
            ++  
Sbjct: 115 ALARM 119


>gi|327412695|emb|CAX67691.1| putative Type IV pilus integral membrane protein (PilR) [Yersinia
           enterocolitica]
          Length = 369

 Score = 36.6 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 61/187 (32%), Gaps = 20/187 (10%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHLGLSLSES 68
           ++   F +AL  +   +  G P+  A+ +I             +  +++     LS + +
Sbjct: 30  RYRLQFYDALRFL---LENGNPLGVALQMIAEVHTDFGKHWHPYGDLVDDCLESLSDNGA 86

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                  +        +  +       G L EAL    +++  R+ +   V  +S+    
Sbjct: 87  GRTFENVLAAWGPLEEA-ALISAGMRSGKLPEALLQAGKLVEARRRILTLVSKMSLYPLL 145

Query: 129 SAWIIGSLPFCVSTLVYFTSP------------GYMNVL--INDPRGHMLLGVAAAFMLI 174
              + G +       +  T              G+M+ L    D +G   +G  A  + +
Sbjct: 146 LFCLGGGMLVINGAYLIPTLRKLSDPQDWSGALGFMHALTNFTDRQGIAAMGAVAILIGL 205

Query: 175 GIMVMRL 181
            +  +  
Sbjct: 206 VLWSIPR 212


>gi|148238355|ref|YP_001223742.1| Type II secretory pathway, component PulF [Synechococcus sp. WH
           7803]
 gi|147846894|emb|CAK22445.1| Type II secretory pathway, component PulF [Synechococcus sp. WH
           7803]
          Length = 411

 Score = 36.6 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/136 (11%), Positives = 44/136 (32%), Gaps = 7/136 (5%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRY 75
                I     RAG+P+  ++ +    + +  +             G+ LS +++R    
Sbjct: 278 AQFCRIFSSLTRAGVPILMSLEISSETAGNSIISDAILESRGLVQEGVLLSTALTR---- 333

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
              + +   +  +    +  G + + L+ ++    D  +   K     +E      + G 
Sbjct: 334 --QKVLPEMALSMLSIGEETGEMDQMLSKVADFYEDEVSASVKALTSMLEPAMIVVVGGI 391

Query: 136 LPFCVSTLVYFTSPGY 151
           +   +  +       +
Sbjct: 392 VGSILLAMYLPMFTVF 407


>gi|146351306|ref|YP_001210533.1| putative typeII /IV secretion system integral membrane protein,
           TadC related [Arthrobacter nitroguajacolicus]
 gi|146218870|emb|CAL09941.1| putative typeII /IV secretion system integral membrane protein,
           TadC related [Arthrobacter nitroguajacolicus]
          Length = 294

 Score = 36.6 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/147 (10%), Positives = 50/147 (34%), Gaps = 1/147 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQ 59
           +K    +   +F        +++    R G P   A++   G +   V R   + ++   
Sbjct: 140 VKQQAVEAREEFSRAVATYFELVAAERRRGSPAQHALSEAAGVADSWVFRRIRQELLRAS 199

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                   ++  +   + ++E+   + ++ +  +    + E+L    + LR +       
Sbjct: 200 LQSQMPWNALRELSEEIGVKELRDLADIMQLSGEEDAAVYESLRARGKSLRSQMVTDEHQ 259

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146
           +      + +  +       ++ L+  
Sbjct: 260 EGNKQTERMTVPMTLLGAVFMAILITA 286


>gi|83649539|ref|YP_437974.1| pilus-assembl protein PilC [Hahella chejuensis KCTC 2396]
 gi|83637582|gb|ABC33549.1| probable pilus-assembl protein PilC [Hahella chejuensis KCTC 2396]
          Length = 326

 Score = 36.6 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/172 (11%), Positives = 56/172 (32%), Gaps = 5/172 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             +    L  +   V+ GL +  A+A +        + +  ++ +     +SL  +    
Sbjct: 8   NSNLSQLLRHLNHQVQQGLSLEQALARLEPLLPAHAQPQVEQLKKVLQGDVSLHATPY-- 65

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN-MKAKVQALSMEAKASAW 131
            +  P  ++S  + ++  +        E   + S  +      +   VQ+L     A   
Sbjct: 66  -QDSPFYDLSRLAAIVRAKGGSLSGFLERYISHSHAMEVSWRGVWDGVQSLLGYVFALLM 124

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           +   +   +   V      + + +  +      L + +       + + ++I
Sbjct: 125 VAIIVFSVLLIKVLPGFQAFYSEMNMELPAFT-LTLISGMETFQSVWIFVLI 175


>gi|14325280|dbj|BAB60184.1| TVG1068265 [Thermoplasma volcanium GSS1]
          Length = 279

 Score = 36.6 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 57/182 (31%), Gaps = 8/182 (4%)

Query: 8   RTAKFLDDFP----NALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ-HL 61
           R             + L I      +G+PV   +  I    S   +  E +R++     L
Sbjct: 96  RQKWIARQVSLRITDFLAITYSLSLSGIPVDRILRDISNMDSLGEIAKESKRIVVMMDRL 155

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G     ++ +  +     ++S     + +   L  ++     +        +  K+K+  
Sbjct: 156 GYDFLTALEKAEKITASDDLSRIWAGLRLSILLDTDIVAYFRDRIDYYSRVQENKSKLSL 215

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            S+   + +++   + F +   +  +     N  ++     + L +      +       
Sbjct: 216 DSLGLASESFVALVIAFPLLIFMTGSIISIKN--LSTIFFVISLIIVLGASAVMFYFTSK 273

Query: 182 MI 183
           + 
Sbjct: 274 IT 275


>gi|307325196|ref|ZP_07604399.1| Type II secretion system F domain protein [Streptomyces
           violaceusniger Tu 4113]
 gi|306889000|gb|EFN19983.1| Type II secretion system F domain protein [Streptomyces
           violaceusniger Tu 4113]
          Length = 299

 Score = 36.6 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 40/103 (38%), Gaps = 1/103 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++    +R  +        LD+ V S+  G  V  A+   V        S+ R  +    
Sbjct: 144 VRKAAAERRRQMRHTLTLILDLTVISLAGGAGVQQALTDAVQAPHGWAASKLRHALRVAQ 203

Query: 61  L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102
           L   S  + +  + +++ + +++  +  +S+    G  +  +L
Sbjct: 204 LTRTSPWQHLGDLGQHLQVSDLTELAATLSLAGTEGAKVRASL 246


>gi|313140674|ref|ZP_07802867.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|313133184|gb|EFR50801.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 171

 Score = 36.6 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 45/139 (32%), Gaps = 1/139 (0%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P  + ++  S+R+G+ V+ ++  +       +      V +  H G S  ++ +     
Sbjct: 33  LPLLIGLLSVSLRSGMSVTRSLEGVGEAVGGALGGGLCAVADALHRGSSWKDAWNAADFG 92

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIG 134
              +  +    V+      G +    L   S + +   +    +  A           + 
Sbjct: 93  DYAETSAILRGVLEPSWTRGVSPIGPLTTASEQWMEGERTAIEQESASLSVKLLLPTGLC 152

Query: 135 SLPFCVSTLVYFTSPGYMN 153
            LP  V   +  +   ++ 
Sbjct: 153 MLPAFVFLGILPSVMAFVG 171


>gi|254513427|ref|ZP_05125492.1| Bacterial type II secretion system protein F domain
           [Rhodobacteraceae bacterium KLH11]
 gi|221532431|gb|EEE35427.1| Bacterial type II secretion system protein F domain
           [Rhodobacteraceae bacterium KLH11]
          Length = 347

 Score = 36.6 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 57/159 (35%), Gaps = 7/159 (4%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
            ++   V AGL +SDA+      S +  +     ++     G+   E   R+  Y P  E
Sbjct: 24  RLVADLVEAGLLLSDALETAATVSREQGKGVVADILLDIREGVRDDEFEDRINLYAPGDE 83

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
                  +   +  G           R+   +  +    ++   +      ++G++ + +
Sbjct: 84  ------ALLFHNIAGAGAEAVFRAARRLAELQDKVHRAFRSALAQPLLGFVLLGAVAYML 137

Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            T  + T    ++ + N P G  L+   + +    I ++
Sbjct: 138 GTSFFPTMQQ-ISPMANWPLGGQLIARFSIWFSANIWIV 175


>gi|325922193|ref|ZP_08183980.1| type II secretion system protein F [Xanthomonas gardneri ATCC
           19865]
 gi|325547312|gb|EGD18379.1| type II secretion system protein F [Xanthomonas gardneri ATCC
           19865]
          Length = 400

 Score = 36.3 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/129 (10%), Positives = 37/129 (28%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   V +GLP+ + + +      +         + T ++  ++ E  S        
Sbjct: 268 MARTLAIMVNSGLPLMEGLMIAARTVDNRALR-----LATDNMVTAIREGGSLAAAMKRA 322

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    ++   +  G L+  L   +  L              +E      + G +  
Sbjct: 323 GVFPPTLLYMASSGENSGRLAPMLERAADYLEREFESFTTAAMSLLEPAIIVLLGGVVAV 382

Query: 139 CVSTLVYFT 147
            V +++   
Sbjct: 383 IVLSILLPI 391


>gi|332297953|ref|YP_004439875.1| Type II secretion system F domain protein [Treponema brennaborense
           DSM 12168]
 gi|332181056|gb|AEE16744.1| Type II secretion system F domain protein [Treponema brennaborense
           DSM 12168]
          Length = 317

 Score = 36.3 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 41/135 (30%), Gaps = 5/135 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            LDI++  + +GL +  A+AV+   +          +I     G   S+S          
Sbjct: 10  FLDILISLLESGLELPAALAVV--NTQKRTAFYADGIIREMKQGKPFSQS---FAAVCSG 64

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                  T + V     G L+  +  +   +RD        +  ++        I     
Sbjct: 65  PLKRNRFTTVYVPLIRAGELTGTVLPVLVFIRDEIQQDTDERKNTLTVLLYPAAIMLCAL 124

Query: 139 CVSTLVYFTSPGYMN 153
             +  +      Y+ 
Sbjct: 125 IGTVFLLTAGIPYLE 139


>gi|13541844|ref|NP_111532.1| hypothetical protein TVN1013 [Thermoplasma volcanium GSS1]
          Length = 282

 Score = 36.3 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 57/182 (31%), Gaps = 8/182 (4%)

Query: 8   RTAKFLDDFP----NALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ-HL 61
           R             + L I      +G+PV   +  I    S   +  E +R++     L
Sbjct: 99  RQKWIARQVSLRITDFLAITYSLSLSGIPVDRILRDISNMDSLGEIAKESKRIVVMMDRL 158

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G     ++ +  +     ++S     + +   L  ++     +        +  K+K+  
Sbjct: 159 GYDFLTALEKAEKITASDDLSRIWAGLRLSILLDTDIVAYFRDRIDYYSRVQENKSKLSL 218

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            S+   + +++   + F +   +  +     N  ++     + L +      +       
Sbjct: 219 DSLGLASESFVALVIAFPLLIFMTGSIISIKN--LSTIFFVISLIIVLGASAVMFYFTSK 276

Query: 182 MI 183
           + 
Sbjct: 277 IT 278


>gi|238062253|ref|ZP_04606962.1| hypothetical protein MCAG_03219 [Micromonospora sp. ATCC 39149]
 gi|237884064|gb|EEP72892.1| hypothetical protein MCAG_03219 [Micromonospora sp. ATCC 39149]
          Length = 312

 Score = 36.3 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 39/97 (40%)

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
             + +  + G  L+E L  +    R      A   A +  A+A+AW++ +LP     L Y
Sbjct: 207 AAVRLADRTGAPLAELLERIEADARAADRGLAAAAAQAAGARATAWLLAALPLGGIGLGY 266

Query: 146 FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
                 + VL++ P G      A     +G++    +
Sbjct: 267 GVGVDPVAVLLHTPVGGGCAVAAVVLQFVGLLWTERL 303


>gi|254453217|ref|ZP_05066654.1| transposase [Octadecabacter antarcticus 238]
 gi|198267623|gb|EDY91893.1| transposase [Octadecabacter antarcticus 238]
          Length = 188

 Score = 36.3 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/114 (13%), Positives = 32/114 (28%), Gaps = 1/114 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             ++R    L++  +   +I      G PV  A           +            L  
Sbjct: 32  KKRRRRLTVLNELADFTRLITALKDYGRPVRAAFEATGNYHRA-LAYHLTTAGFEVKLVS 90

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
           S++ + +R   +    +       + +     GN       L R   D + +  
Sbjct: 91  SVALARTREALHNSWDKNDPKDAQVILHMMEIGNEQFYHDPLVRGTNDIQELSK 144


>gi|119025149|ref|YP_908994.1| hypothetical protein BAD_0131 [Bifidobacterium adolescentis ATCC
           15703]
 gi|154486515|ref|ZP_02027922.1| hypothetical protein BIFADO_00330 [Bifidobacterium adolescentis
           L2-32]
 gi|118764733|dbj|BAF38912.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
 gi|154084378|gb|EDN83423.1| hypothetical protein BIFADO_00330 [Bifidobacterium adolescentis
           L2-32]
          Length = 171

 Score = 36.3 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/141 (12%), Positives = 47/141 (33%), Gaps = 10/141 (7%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P  L+++  ++R G  +  A+  +            R   E  + G+  +E+       
Sbjct: 40  LPLILEMLSVAIRQGASIPRALITVGNIVEGEFGGGLRSAGERLNSGMPWNEA------- 92

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD-RKNMKAKVQALSMEAKASAWIIG 134
               +    + V    S    + S  +  L+  +     + +++++  + +      +  
Sbjct: 93  --WPDDDDCAVVRDAFSSSWSSGSSPVNRLATAIEQLDWDERSRIEQSAAKLSIRLLLPT 150

Query: 135 SLPFCVSTLVYFTSPGYMNVL 155
            L    + +     P  M+ L
Sbjct: 151 GLCMLPAFVAIGVIPAVMSFL 171


>gi|238026149|ref|YP_002910380.1| type IV pilus biogenesis protein PilC [Burkholderia glumae BGR1]
 gi|237875343|gb|ACR27676.1| Type IV pilus biogenesis protein PilC [Burkholderia glumae BGR1]
          Length = 402

 Score = 36.3 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 47/156 (30%), Gaps = 6/156 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   +RAGLP++ A+ ++        +      +      G  LSE++ +  R   
Sbjct: 68  FTHQLGGLLRAGLPLAPALELLADAGGHRDLPRIAAGLARAIGAGRQLSEAMRQYPRQFD 127

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G L+  LA ++         +A+V+       A      ++ 
Sbjct: 128 P-----MFRQLVAVGEASGTLAPLLARVAADRERGAAQRARVRTALAYPLAVLAFSLAIS 182

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             +   V  T     +             +  +  +
Sbjct: 183 AALLVWVVPTFAQIFDGFGARLPAPTRFVLTLSATV 218



 Score = 34.3 bits (77), Expect = 7.7,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 41/128 (32%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +   +RAG P++DA   +   + +PV       I  + L         R     P + 
Sbjct: 274 RTLGTLLRAGTPLADAFDSLAQATGNPVFDRATDAIAARLLRGERLAQAMRAAGCFPDEV 333

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
           V   +       +  G L   LA+++ +   + + +  +     E      +   +   V
Sbjct: 334 VQPVAVA-----EESGTLDAMLADIATLCERQVDEQIALLTSLCEPLVVIVLGALVGGLV 388

Query: 141 STLVYFTS 148
             +     
Sbjct: 389 VAMYLPIV 396


>gi|123443755|ref|YP_001007726.1| general secretion pathway protein F [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090716|emb|CAL13592.1| general secretion pathway protein F [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 405

 Score = 36.3 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 55/161 (34%), Gaps = 9/161 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
           +D       +   V A LP+ +A+  +  QS     R+   +V      G  L+++++  
Sbjct: 66  NDLVLLTRQLSTLVAAALPLEEALLALAQQSEKPRHRALLEQVRNKILEGQPLADALASF 125

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +       +     +    +  G+L   L  L+      + +K+K+    +       +
Sbjct: 126 PKT-----FTLLFRTMVAAGEASGHLDNVLLRLADNAEQSQKLKSKMLQAMIYPL---VL 177

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
                  V+ L+    P  +   I+  +   L   A   + 
Sbjct: 178 TVVAIAVVAILLTAVVPKVIEQFIHMQQALPLSTRALISLS 218


>gi|332283579|ref|YP_004415490.1| type II secretion system protein F [Pusillimonas sp. T7-7]
 gi|330427532|gb|AEC18866.1| type II secretion system protein F [Pusillimonas sp. T7-7]
          Length = 370

 Score = 36.3 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 3/125 (2%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L       ++G+P+  A+A +   ++  +++     +     G +L  S        P 
Sbjct: 241 FLYTFAVLQKSGIPIQTALASLAQNANPWLKTRISAAMYGVRQGYNLGTSFRNAGHDFPD 300

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
            E       +   S     L E   N    L D  N   K          +   +  L  
Sbjct: 301 WEALPVMETMGSLSGSDDALIEYAEN---WLEDTANQIQKFSRRLSAISMAWVAVCILLL 357

Query: 139 CVSTL 143
            +S +
Sbjct: 358 ALSVI 362


>gi|160893679|ref|ZP_02074463.1| hypothetical protein CLOL250_01233 [Clostridium sp. L2-50]
 gi|156864664|gb|EDO58095.1| hypothetical protein CLOL250_01233 [Clostridium sp. L2-50]
          Length = 290

 Score = 36.3 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/142 (10%), Positives = 46/142 (32%), Gaps = 2/142 (1%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K +  +   + P  +  + + ++A   V   +    G +   +  E   ++       + 
Sbjct: 139 KAKREEIEGELPRMVATMEQELKASRNVIGMLERFKGNAGPALTGELDILLADMRS-SNY 197

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             +++R    +    +S     +    +   + +     L+   +  +  + K QA  + 
Sbjct: 198 EAALTRFEARLNSPMLSDVVRGLIGVLRGDDS-TVYFQMLAHDFKQIELQRLKAQAQKIP 256

Query: 126 AKASAWIIGSLPFCVSTLVYFT 147
            K   +    L   + T +   
Sbjct: 257 PKIRVFSFVMLVCFLLTYLAII 278


>gi|254513604|ref|ZP_05125668.1| hypothetical protein RKLH11_4282 [Rhodobacteraceae bacterium KLH11]
 gi|221532113|gb|EEE35110.1| hypothetical protein RKLH11_4282 [Rhodobacteraceae bacterium KLH11]
          Length = 348

 Score = 36.3 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 59/163 (36%), Gaps = 6/163 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
            ++   + +GL +SDA+      + +  +     V+     G+  +E   R+ RY P  E
Sbjct: 24  RLVADLMDSGLMLSDALETAADVAREQRKDTVAAVLLDIREGIPRAEFEERVSRYAPGAE 83

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
                  +   ++    +  A+   ++    R+ ++  +    +       +   L   +
Sbjct: 84  --ALLFRMVGSAESSRVVRAAMRLAAQSDTLRRALRTALARPILMLVLVGVVFQMLGTSL 141

Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVA----AAFMLIGIMVM 179
             ++  T+P     L     G   +  +    A  + IG+ ++
Sbjct: 142 YPVLAQTAPMSQWPLPAQWLGAFCIWFSANQWAVLVCIGLAII 184


>gi|116074293|ref|ZP_01471555.1| pili biogenesis protein [Synechococcus sp. RS9916]
 gi|116069598|gb|EAU75350.1| pili biogenesis protein [Synechococcus sp. RS9916]
          Length = 424

 Score = 36.3 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/135 (10%), Positives = 41/135 (30%), Gaps = 5/135 (3%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
                I     RAG+P+  ++ +    + + + ++      T      L          +
Sbjct: 291 AQFCRIFSSLTRAGVPILMSLEISSETAGNSIIADAILESRTLVQEGVL-----LSTALI 345

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
             Q +   +  +    +  G + + L+ ++    D  +   K     +E      + G +
Sbjct: 346 RQQVLPEMALSMLAIGEETGEMDQMLSKVADFYEDEVSAAVKALTSMLEPAMIVVVGGIV 405

Query: 137 PFCVSTLVYFTSPGY 151
              +  +       +
Sbjct: 406 GSILLAMYLPMFTVF 420


>gi|229093305|ref|ZP_04224420.1| ComG operon protein 2 [Bacillus cereus Rock3-42]
 gi|228690088|gb|EEL43885.1| ComG operon protein 2 [Bacillus cereus Rock3-42]
          Length = 315

 Score = 36.3 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 7/132 (5%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
                +   +  GL V +A+ +++ Q      + E  R+      G  L   I++     
Sbjct: 184 YFATQLSGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIAGEPLQSIIAK----- 238

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
             +      + I    Q  GNL+  L + S ++ ++   K K   + ++      I G +
Sbjct: 239 -SEYYEEELSYIITHGQANGNLAIELGDYSDLIMEKMERKIKRMLVIIQPILFTCIGGIV 297

Query: 137 PFCVSTLVYFTS 148
                 ++    
Sbjct: 298 VLMYLAMIMPMF 309


>gi|89897405|ref|YP_520892.1| hypothetical protein DSY4659 [Desulfitobacterium hafniense Y51]
 gi|89336853|dbj|BAE86448.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 316

 Score = 36.3 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/152 (10%), Positives = 48/152 (31%), Gaps = 2/152 (1%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K++  +   + P  +  I ++++A   V   +      +      E   +        S 
Sbjct: 165 KEKREQIEGELPRFVSTIEQTLKASRDVLAMMENYKKNAGPAFARELDVLTADMRS-SSY 223

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             +++R    +    +S     +    +   + +     L+   +  +  + K  A  + 
Sbjct: 224 EAALTRFEARLNSPMLSDVVRGLIGVLRGDDS-TVYFQMLAHDFKALELQRLKSLAQKIP 282

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
            K   +    L   + T +   +   ++ L  
Sbjct: 283 PKIRIFSFIMLMCFLLTYLAIIAMEILSSLGT 314


>gi|65321622|ref|ZP_00394581.1| COG1459: Type II secretory pathway, component PulF [Bacillus
           anthracis str. A2012]
 gi|165873272|ref|ZP_02217881.1| comG operon protein 2 [Bacillus anthracis str. A0488]
 gi|167638556|ref|ZP_02396832.1| comG operon protein 2 [Bacillus anthracis str. A0193]
 gi|170709330|ref|ZP_02899746.1| comG operon protein 2 [Bacillus anthracis str. A0389]
 gi|164710989|gb|EDR16557.1| comG operon protein 2 [Bacillus anthracis str. A0488]
 gi|167513404|gb|EDR88774.1| comG operon protein 2 [Bacillus anthracis str. A0193]
 gi|170125756|gb|EDS94667.1| comG operon protein 2 [Bacillus anthracis str. A0389]
          Length = 345

 Score = 36.3 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 7/132 (5%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
                +   +  GL V +A+ +++ Q      + E  R+      G  L   I++     
Sbjct: 214 YFATQLSGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIAGEPLQSIIAK----- 268

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
             +      + I    Q  GNL+  L + S ++ ++   K K   + ++      I G +
Sbjct: 269 -SEYYEEELSYIITHGQANGNLAIELGDYSDLIMEKMERKIKRMLVIIQPILFTCIGGIV 327

Query: 137 PFCVSTLVYFTS 148
                 ++    
Sbjct: 328 VLMYLAMIMPMF 339


>gi|70732017|ref|YP_261762.1| integral membrane protein [Pseudomonas fluorescens Pf-5]
 gi|68346316|gb|AAY93922.1| integral membrane protein, putative [Pseudomonas fluorescens Pf-5]
          Length = 388

 Score = 36.3 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/126 (10%), Positives = 44/126 (34%), Gaps = 2/126 (1%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L  +   +R+G+   DA+ ++   +   +R     +      G +  +++       P 
Sbjct: 255 FLMNMSVMLRSGINQLDALTILKRGAPPWLRERLDAIHYGVRSGKNFGQALKLAGHRFPD 314

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                +  V++V+     ++    +    + +  + ++A  + L   +     ++  L  
Sbjct: 315 AMAIHYLEVLAVRKGFAESMERFASR--WLEQTLRKVEATSKFLIAFSSVCMGVLMILVV 372

Query: 139 CVSTLV 144
                +
Sbjct: 373 VGIFQM 378


>gi|33864557|ref|NP_896116.1| pili biogenesis protein [Synechococcus sp. WH 8102]
 gi|33632080|emb|CAE06533.1| pili biogenesis protein [Synechococcus sp. WH 8102]
          Length = 357

 Score = 36.3 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/135 (9%), Positives = 39/135 (28%), Gaps = 5/135 (3%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
                I     RAG+P+  ++ +    + + + S+             L          +
Sbjct: 224 AQFCRIFSSLTRAGVPILMSMEISSQTAGNSIISDAILASREMVQEGVL-----LSTALI 278

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
             + +   +  +    +  G + + L+ ++    D      K     +E      + G +
Sbjct: 279 RQKVLPDMALNMLAIGEETGEMDKMLSKVADFYEDEVGAMVKALTSMLEPAMIVVVGGIV 338

Query: 137 PFCVSTLVYFTSPGY 151
              +  +       +
Sbjct: 339 GSILLAMYLPMFTVF 353


>gi|332238623|ref|XP_003268503.1| PREDICTED: fibronectin type III and SPRY domain-containing protein
           2 [Nomascus leucogenys]
          Length = 750

 Score = 36.3 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/105 (12%), Positives = 37/105 (35%), Gaps = 11/105 (10%)

Query: 31  LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISV 90
           +P+++A+     +    +    +++IE ++    L E    +      QE +        
Sbjct: 204 IPLNEALESAKDEIHKNMYKLEKQIIEMENFANHLEEVFITVEENFGKQEQN-------- 255

Query: 91  QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                 + +E L  L++   ++     + +   +EA     +   
Sbjct: 256 ---FESHYNEILETLAQKYEEKIQALGEKKKEKLEALYGQLVSCG 297


>gi|229198371|ref|ZP_04325077.1| ComG operon protein 2 [Bacillus cereus m1293]
 gi|228585071|gb|EEK43183.1| ComG operon protein 2 [Bacillus cereus m1293]
          Length = 315

 Score = 36.3 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 7/132 (5%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
                +   +  GL V +A+ +++ Q      + E  RV      G  L   I++     
Sbjct: 184 YFATQLSGLLHGGLSVLEALTIMMEQKYQPFFQYEAGRVKHQLIAGEPLQSIIAKSG--- 240

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
                    + I    Q  GNL+  L + S ++ ++   K K   + ++      I   +
Sbjct: 241 ---YYEEELSYIITHGQANGNLAIELGDYSDLIMEKMEQKIKRMLVIIQPILFTCIGAIV 297

Query: 137 PFCVSTLVYFTS 148
                 ++    
Sbjct: 298 VLMYLAMIMPMF 309


>gi|258510585|ref|YP_003184019.1| hypothetical protein Aaci_0582 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477311|gb|ACV57630.1| hypothetical protein Aaci_0582 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 294

 Score = 36.3 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/166 (9%), Positives = 44/166 (26%), Gaps = 2/166 (1%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL- 61
             I+ R               V  +R  +P+ +A+  I   ++       RR +      
Sbjct: 129 RRIQARRRDAAWQVRQLKRRFVSLLRRRIPLEEALWQIAKDAAAQRTDFGRRFVARMQEA 188

Query: 62  -GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
              +L +++  +     + E++ F   I             +          +  +    
Sbjct: 189 RVRALGDALHDLAEEFRVPELTRFVQAIRHAEANSLGSLADILETQIRDESAQLDELVEA 248

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
             +        +   +   +     + +       I   +G + L 
Sbjct: 249 EKNAMQLKLRMMSVVMFVYILGWAGYFAFAVFRHQIQTGQGILGLF 294


>gi|219521259|gb|AAI44182.1| FSD2 protein [Homo sapiens]
          Length = 704

 Score = 36.3 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/105 (12%), Positives = 37/105 (35%), Gaps = 11/105 (10%)

Query: 31  LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISV 90
           +P+++A+     +    +    +++IE ++    L E    +      QE +        
Sbjct: 203 IPLNEALESAKDEIHKNMYKLEKQIIEMENFANHLEEVFITVEENFGKQEQN-------- 254

Query: 91  QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                 + +E L  L++   ++     + +   +EA     +   
Sbjct: 255 ---FESHYNEILETLAQKYEEKIQALGEKKKEKLEALYGQLVSCG 296


>gi|219521257|gb|AAI44176.1| FSD2 protein [Homo sapiens]
          Length = 704

 Score = 36.3 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/105 (12%), Positives = 37/105 (35%), Gaps = 11/105 (10%)

Query: 31  LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISV 90
           +P+++A+     +    +    +++IE ++    L E    +      QE +        
Sbjct: 203 IPLNEALESAKDEIHKNMYKLEKQIIEMENFANHLEEVFITVEENFGKQEQN-------- 254

Query: 91  QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                 + +E L  L++   ++     + +   +EA     +   
Sbjct: 255 ---FESHYNEILETLAQKYEEKIQALGEKKKEKLEALYGQLVSCG 296


>gi|119582843|gb|EAW62439.1| hCG2039359 [Homo sapiens]
          Length = 768

 Score = 36.3 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/105 (12%), Positives = 37/105 (35%), Gaps = 11/105 (10%)

Query: 31  LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISV 90
           +P+++A+     +    +    +++IE ++    L E    +      QE +        
Sbjct: 222 IPLNEALESAKDEIHKNMYKLEKQIIEMENFANHLEEVFITVEENFGKQEQN-------- 273

Query: 91  QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                 + +E L  L++   ++     + +   +EA     +   
Sbjct: 274 ---FESHYNEILETLAQKYEEKIQALGEKKKEKLEALYGQLVSCG 315


>gi|55741632|ref|NP_001007123.1| fibronectin type III and SPRY domain-containing protein 2 [Homo
           sapiens]
 gi|166988404|sp|A1L4K1|FSD2_HUMAN RecName: Full=Fibronectin type III and SPRY domain-containing
           protein 2; AltName: Full=SPRY domain-containing protein
           1
 gi|120660424|gb|AAI30570.1| Fibronectin type III and SPRY domain containing 2 [Homo sapiens]
 gi|193783791|dbj|BAG53773.1| unnamed protein product [Homo sapiens]
 gi|313883842|gb|ADR83407.1| fibronectin type III and SPRY domain containing 2 [synthetic
           construct]
          Length = 749

 Score = 36.3 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/105 (12%), Positives = 37/105 (35%), Gaps = 11/105 (10%)

Query: 31  LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISV 90
           +P+++A+     +    +    +++IE ++    L E    +      QE +        
Sbjct: 203 IPLNEALESAKDEIHKNMYKLEKQIIEMENFANHLEEVFITVEENFGKQEQN-------- 254

Query: 91  QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                 + +E L  L++   ++     + +   +EA     +   
Sbjct: 255 ---FESHYNEILETLAQKYEEKIQALGEKKKEKLEALYGQLVSCG 296


>gi|302387179|ref|YP_003823001.1| hypothetical protein Closa_2837 [Clostridium saccharolyticum WM1]
 gi|302197807|gb|ADL05378.1| conserved hypothetical protein [Clostridium saccharolyticum WM1]
          Length = 290

 Score = 36.3 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 47/148 (31%), Gaps = 2/148 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           + AK   + P  +  I + ++A   V   +      + +    E   +        S   
Sbjct: 141 KRAKIESELPRFVATITQELKASRDVLGMLENYKKNAGEEFAVELDILTADMRS-SSYEA 199

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +++R    +    +S  +  +    +           L+  ++  +  + K QA+ +  K
Sbjct: 200 ALTRFEARINSPMLSDLTRGLIGVLRGDDGAM-YFQMLAHDMKQLELQRLKAQAMKIPPK 258

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
              +    L   + T +       +  L
Sbjct: 259 IRVFSFIMLMCFLLTYIAVIVFEILRSL 286


>gi|308235608|ref|ZP_07666345.1| hypothetical protein GvagA14_05189 [Gardnerella vaginalis ATCC
           14018]
 gi|311113936|ref|YP_003985157.1| hypothetical protein HMPREF0421_20048 [Gardnerella vaginalis ATCC
           14019]
 gi|310945430|gb|ADP38134.1| conserved hypothetical protein [Gardnerella vaginalis ATCC 14019]
          Length = 205

 Score = 36.3 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/143 (11%), Positives = 48/143 (33%), Gaps = 10/143 (6%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSD----PVRSEFRRVIETQHLGLSLSESISRMVRY 75
           L +++ ++++G+ ++ A+  +           +R+  + ++       + S       + 
Sbjct: 62  LQMMIVALKSGVAITRALDAVGSSIPGGKGIWLRNVSKALLSGDTWIEAWSAPYVCFDKK 121

Query: 76  MPLQEVSFFSTVISVQSQLG------GNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
                 SF  ++   QS           +   +A L    +  +N+  K  +        
Sbjct: 122 DKNPSASFVLSMWLRQSLRESWSCGSSPVPVLIAILQNYEQSMRNVAKKESSRLSVRLLL 181

Query: 130 AWIIGSLPFCVSTLVYFTSPGYM 152
              +  LP  +   +  T   +M
Sbjct: 182 PVGLCFLPAFIFVGILPTVSAFM 204


>gi|307595736|ref|YP_003902053.1| type II secretion system F domain-containing protein [Vulcanisaeta
           distributa DSM 14429]
 gi|307550937|gb|ADN51002.1| Type II secretion system F domain protein [Vulcanisaeta distributa
           DSM 14429]
          Length = 620

 Score = 36.3 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/148 (9%), Positives = 48/148 (32%), Gaps = 1/148 (0%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQH 60
              +     +   ++   L  +    ++G         +   +           ++    
Sbjct: 379 SMRVVSERWEIDREYAEFLRDVTELRKSGFTPEKTFETLKYTRRYGAFDKYLDTMVRQIR 438

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ + E +S ++  +       F+ +++    LGG   + L  L+       +++  ++
Sbjct: 439 YGVPIREVLSSIMPKLHSYYSKVFTFLLTETIDLGGASPQVLDMLASFASSIVSVQENMR 498

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTS 148
           A     +   +I   +      ++ F+ 
Sbjct: 499 ARLRPLRYVPYIGAVILIVTLVVLIFSV 526


>gi|313105514|ref|ZP_07791783.1| putative type II secretion system protein [Pseudomonas aeruginosa
           39016]
 gi|310878285|gb|EFQ36879.1| putative type II secretion system protein [Pseudomonas aeruginosa
           39016]
          Length = 298

 Score = 36.3 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 8/107 (7%), Positives = 31/107 (28%)

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 ++       +    +  G+L++ +  L+  + +R  ++ K+    +       +
Sbjct: 14  ALAARPRDFPEIYRALVAAGEESGDLAQVMERLADYIEERNALRGKILTAFIYPAVVGVV 73

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
              +   +   V        +    D        + A+  +     +
Sbjct: 74  SIGIVIFLLGYVVPQVVSAFSQARQDLPALTRAMLQASDFVRAWGWL 120



 Score = 35.5 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 38/130 (29%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+  A+       ++  +             G+SL+ ++        
Sbjct: 167 FASTLAILGSAGVPLLRALDAARQTLANDCLAQAVEEATAQVREGVSLASALRT------ 220

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            Q      T +    +  G L   L   ++ L      +A      +E      + G + 
Sbjct: 221 RQVFPPILTHLIASGEKTGALPPMLDRAAQTLSRDIERRAMGMTALLEPLMIVVMGGVVL 280

Query: 138 FCVSTLVYFT 147
             V  ++   
Sbjct: 281 TIVMAVLMPI 290


>gi|58337050|ref|YP_193635.1| competence protein [Lactobacillus acidophilus NCFM]
 gi|227903613|ref|ZP_04021418.1| competence protein [Lactobacillus acidophilus ATCC 4796]
 gi|58254367|gb|AAV42604.1| competence protein [Lactobacillus acidophilus NCFM]
 gi|227868500|gb|EEJ75921.1| competence protein [Lactobacillus acidophilus ATCC 4796]
          Length = 334

 Score = 36.3 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 63/173 (36%), Gaps = 14/173 (8%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            +     LD +  S+  G  +S+++ ++        R    ++      G SLSE + ++
Sbjct: 16  EEQLA-FLDYLKNSLNNGFSLSNSIELMPVLWPKQ-RVLMGKLARRMKNGASLSEELIKL 73

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                    S         S   GNL+E L  L+ + R ++    K++A        A +
Sbjct: 74  G-------FSRTMVTQVNLSLQQGNLTECLEQLAILSRLKQEQIKKLRAELSYPLVLAIM 126

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           +  L   + + +            ++  G +++ +    +  GI     +I+ 
Sbjct: 127 MIVLLMFMQSFISMQFNN-----TSEHSGDLVILILIILIGSGIYFFTRIISL 174


>gi|78043922|ref|YP_359488.1| type IV pilus assembly protein PilC [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996037|gb|ABB14936.1| type IV pilus assembly protein PilC [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 402

 Score = 36.3 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/131 (9%), Positives = 43/131 (32%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   V+ G+P+  ++ V+     +  ++       +    G SL+  +++      
Sbjct: 271 FSRTMATLVQGGVPMLQSLRVVQKTLGNGEMQKVLELAEDKVREGESLATFLAQ------ 324

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +      T + +  +  G L   L   +       +      +  +E     ++ G + 
Sbjct: 325 SRWFPPLLTQMMLVGEETGQLDAMLTKAADFYEAEVDAAVGRLSSIIEPVLILFMGGIVG 384

Query: 138 FCVSTLVYFTS 148
             + +++    
Sbjct: 385 LIIVSIMLPMF 395


>gi|92113785|ref|YP_573713.1| type II secretion system protein [Chromohalobacter salexigens DSM
           3043]
 gi|91796875|gb|ABE59014.1| type II secretion system protein [Chromohalobacter salexigens DSM
           3043]
          Length = 297

 Score = 36.3 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 56/154 (36%), Gaps = 3/154 (1%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIETQHLGLSLSES 68
             ++    L +      AG+ +   +  ++     ++     E R V      G +  E+
Sbjct: 144 LDEEIGLVLQVTRMLWEAGMTLESVLQGLIDNLANTAPETVRELRSVTHKIEAGQAREEA 203

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           +  +      + +     +++  S  GG   ++L  L+ +LRDR+  + +     +  K 
Sbjct: 204 LEEVAGIQASEGLGDLLKLLAQVSASGGGARDSLRTLADLLRDRRRTRLQEAVTRLSGKM 263

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162
           S  ++  L   +  ++   +   +   +    G 
Sbjct: 264 SLVMMVFLFPALLIVLAGPAVLNLAGALATLGGQ 297


>gi|171909897|ref|ZP_02925367.1| Pilus tip-associated protein [Verrucomicrobium spinosum DSM 4136]
          Length = 409

 Score = 36.3 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 42/129 (32%), Gaps = 1/129 (0%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
              +   + A + +S A+A+    S      EF   + +  + +  +   S ++    L 
Sbjct: 271 FRCLAMLLEANVRLSSALAITAEASWHWQYKEFFERLASH-INVGRTMHESFLIESHWLG 329

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
           E       +   +   G  +E L  ++    D  +  A      +E     ++   + F 
Sbjct: 330 EDGRSICGLIELASETGAGTEMLNEIADDYEDELDGLANQVDKIIEPITIMFLGLMVGFL 389

Query: 140 VSTLVYFTS 148
           V  +     
Sbjct: 390 VYAIYAPIF 398


>gi|284052287|ref|ZP_06382497.1| hypothetical protein AplaP_12538 [Arthrospira platensis str.
           Paraca]
          Length = 196

 Score = 36.3 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 17/164 (10%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   + +GL V  ++ VI  +S+  +     +VI++   G  LS +  R  R        
Sbjct: 13  LAVLLESGLTVYQSLIVIAKKSNPRLGRYLGKVIKSLGRGEDLSVAFRRAPRIFDW---- 68

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
            ++  +   +   G L E L  L+  +  ++  +         A A+      L      
Sbjct: 69  -WTASLLDIAATSGALPEMLLQLA-EIEKQQTHRQNFYRSVTIAAATTAFSLLLLLATIL 126

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM----VMRLM 182
             +  +       +ND    M L     FM+  ++    ++R +
Sbjct: 127 YTHEAN-------LNDWLLWMFLAGVVGFMVYKLIPRLPLIRRI 163


>gi|57169052|ref|ZP_00368179.1| general secretory pathway protein F [Campylobacter coli RM2228]
 gi|57019510|gb|EAL56201.1| general secretory pathway protein F [Campylobacter coli RM2228]
          Length = 391

 Score = 36.3 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 52/170 (30%), Gaps = 9/170 (5%)

Query: 1   MKHLIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           +K + K    +  D  F      +      G+ + DA+  +             ++ +  
Sbjct: 40  IKEIQKASFKRLDDARFILFFQELSLLCEVGISIKDALKEL---DKIYSHKMIAKLCDNL 96

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           +LG +LS +       +   E+      +   SQ  G LSE    +SR+ ++    + +V
Sbjct: 97  NLGQNLSLAFENANFGLTHAEL-----ALIKTSQNTGKLSEFFMQISRLSQNNVENEQRV 151

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
           +            + +    +   V          L         L +  
Sbjct: 152 KKALRYPLIVFLSVCAAFVLLMLFVVPNFKDLFEDLNLALPFITELIIYI 201


>gi|121583254|ref|YP_973690.1| hypothetical protein Pnap_4884 [Polaromonas naphthalenivorans CJ2]
 gi|120596512|gb|ABM39948.1| hypothetical protein Pnap_4884 [Polaromonas naphthalenivorans CJ2]
          Length = 164

 Score = 36.3 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 9/116 (7%), Positives = 29/116 (25%), Gaps = 14/116 (12%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
             LD +  +V AGL                    F+    T+    + ++++        
Sbjct: 63  QMLDSMTAAVEAGLGTPATF--------------FKDFFTTEQDVQNFADALDDYSAEET 108

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +      +     ++  +R+    + +    + +      + 
Sbjct: 109 FWVNDRHFNAFIHATNSSEENAVTYPAMAGHIRELFESEREKAKKTAKPTYKKNVN 164


>gi|254238769|ref|ZP_04932092.1| type IV pilus protein PilR [Pseudomonas aeruginosa C3719]
 gi|126170700|gb|EAZ56211.1| type IV pilus protein PilR [Pseudomonas aeruginosa C3719]
          Length = 359

 Score = 36.3 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/170 (12%), Positives = 55/170 (32%), Gaps = 12/170 (7%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHLGLSL 65
           R  +         + +   +  G+P+ DAVA +                +   + L    
Sbjct: 19  RKERLQ-----FYESMSTLLENGVPLKDAVAEVHKIFAHEGQHPFHPVAIASREALMGLS 73

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           +         + L         +    ++ GNL +A+ +   ++  +  ++A +    + 
Sbjct: 74  NGKRLATAMALYLPAQER---ALIEAGEMSGNLVQAMGDAVSLVEAQARIRATIWQALLY 130

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
             A + ++  L   V+  +  +     + +     G +    A A  + G
Sbjct: 131 PSALSAMMVFLLCIVAYRMVPSLARLSDPV--TWTGPLATLNAIASFVTG 178


>gi|332844585|ref|XP_003314887.1| PREDICTED: LOW QUALITY PROTEIN: fibronectin type III and SPRY
           domain-containing protein 2-like, partial [Pan
           troglodytes]
          Length = 701

 Score = 36.3 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/105 (12%), Positives = 37/105 (35%), Gaps = 11/105 (10%)

Query: 31  LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISV 90
           +P+++A+     +    +    +++IE ++    L E    +      QE +        
Sbjct: 203 IPLNEALESAKDEIHKNMYKLEKQIIEMENFANHLEEVFITVEENFGKQEQN-------- 254

Query: 91  QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                 + +E L  L++   ++     + +   +EA     +   
Sbjct: 255 ---FESHYTEILETLAQKYEEKIQALGEKKKEKLEALYGQLVSCG 296


>gi|325264355|ref|ZP_08131086.1| putative bacterial type II secretion system protein F domain
           protein [Clostridium sp. D5]
 gi|324030426|gb|EGB91710.1| putative bacterial type II secretion system protein F domain
           protein [Clostridium sp. D5]
          Length = 350

 Score = 35.9 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/176 (10%), Positives = 58/176 (32%), Gaps = 9/176 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISR 71
             +  +    I   +++G+   + + +++  + S   +   + V E      S+ +++ +
Sbjct: 12  NMEVSSFCGQIALILKSGISSLEGITIMLEDASSADEKDILQAVFEYMQETGSMYQALEK 71

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                       +   +    +  G L E ++ LS       ++   ++         A 
Sbjct: 72  TGL------FPSYMLHMIQIGEETGTLDEVMSALSEHYDREDSIAKSIKNAVTYPLIMAG 125

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMINF 185
           ++  +   +   V          L  +  G    L+G+  A     I+ + ++   
Sbjct: 126 MMVVVIIVLLVKVMPIFNQVFIQLGTEMTGFSRTLMGIGNAINRYSIVFIVILAVI 181


>gi|297560196|ref|YP_003679170.1| type II secretion system F domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296844644|gb|ADH66664.1| Type II secretion system F domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 297

 Score = 35.9 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/158 (10%), Positives = 49/158 (31%), Gaps = 4/158 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPV-SDAVAVIVGQSSDPVRSEFRRVIETQ 59
           ++    KR  +      +  D++V S+  G  V           +   +      + +  
Sbjct: 142 LRDEANKRREQMRRALASFADLVVVSLAGGAGVNGALADAGAAGNGWAMARIRESLRQAT 201

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            +  S   ++  +       E +  +  + +    G  +  +LA  ++ LR +   +   
Sbjct: 202 LMRQSPWTALRDLGERYDTPEFAELAASLQLAGADGARIRSSLAAKAKTLRTQFLAEM-- 259

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
                ++      +  +      L     P   N++ +
Sbjct: 260 -DAEAQSATERMSLPVILLFAGFLALLGYPAMSNIMFS 296


>gi|118431779|ref|NP_148458.2| hypothetical protein APE_2207.1 [Aeropyrum pernix K1]
 gi|116063101|dbj|BAA81219.2| hypothetical protein [Aeropyrum pernix K1]
          Length = 332

 Score = 35.9 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 62/181 (34%), Gaps = 9/181 (4%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGL-SL 65
           R      + P     +    R G+PVS  +  +   +    +R E   +     L   + 
Sbjct: 134 RKEGIETELPFFAAYLSIMGRGGVPVSLVIDRVASLKIFKALREEAEMIRTKIRLLGKNP 193

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++   V   P      F    +   ++G ++   L   ++ L +R+    ++ A  M 
Sbjct: 194 LDALEEHVLDSPSSVFRDFILGYTTAVKVGSDVIHYLEIRTQDLFERRLNDIRLLAERMT 253

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND-------PRGHMLLGVAAAFMLIGIMV 178
                +++ ++   +   ++FT     +  +             ++L        I +++
Sbjct: 254 LYLEIYLVVAVIATIVFYIFFTISSVFHGNLGGVASAQYASTTQLILYSFLVLPTINVIM 313

Query: 179 M 179
           +
Sbjct: 314 L 314


>gi|45359239|ref|NP_988796.1| flagellar assembly protein J [Methanococcus maripaludis S2]
 gi|45048114|emb|CAF31232.1| flagella accessory protein J [Methanococcus maripaludis S2]
          Length = 558

 Score = 35.9 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 66/181 (36%), Gaps = 13/181 (7%)

Query: 15  DFPNALDIIVRSVRA-GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +FP+ L  +  SV A G  ++D++  +      P+  +   + +   + ++  ++     
Sbjct: 331 NFPDFLRSLGDSVSAKGGGMTDSLEYLSSNDFGPLTKDLEGLYKRVSIRVNSQKAWRYFG 390

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                  +  FS +    + LGGN   A   + +  R   N++ K +  S+   +     
Sbjct: 391 YDTCSYMIQLFSEMFERCTFLGGNAGVAAHMIGKNFRKIINLR-KAKYQSVSQFSGIMYG 449

Query: 134 GSLPFCVSTLVYFTSPGYMNVLIND---PRGHMLLG-------VAAAFMLI-GIMVMRLM 182
            +    ++          +N L      P   + +         +    LI G++V+  +
Sbjct: 450 LAGGMALTLYASAGVANMVNGLYTSLDIPDTMISIVNIITPEDFSLIAYLIYGVLVIYSI 509

Query: 183 I 183
           +
Sbjct: 510 V 510


>gi|307105835|gb|EFN54083.1| hypothetical protein CHLNCDRAFT_136204 [Chlorella variabilis]
          Length = 658

 Score = 35.9 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 6/89 (6%), Positives = 20/89 (22%), Gaps = 2/89 (2%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL--GLSLSESISRMVRY 75
           + L  ++    +GL +  A+  +  +                 +     +  +       
Sbjct: 201 DLLAQLILDYESGLSIEAAIQRVRTRMEAWRVQVLLDFYGMSRIGGQHRVLPADVEAAAK 260

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALAN 104
                    +T +     +       L  
Sbjct: 261 HDWPLPFLSATYVRTMLDVHMEERRQLKR 289


>gi|282856392|ref|ZP_06265671.1| general secretion pathway protein F [Pyramidobacter piscolens
           W5455]
 gi|282585763|gb|EFB91052.1| general secretion pathway protein F [Pyramidobacter piscolens
           W5455]
          Length = 407

 Score = 35.9 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 52/138 (37%), Gaps = 7/138 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +     AG+P+S ++  +   S   P+  + RRV    + G S+S ++       P
Sbjct: 74  FFRELALFTAAGIPLSVSLQRLAETSRCVPMIKKIRRVCRGVNGGQSMSRAMRDGRFCEP 133

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +        ++    +  G LSE+L  ++     R+ +++K+ +         +   ++ 
Sbjct: 134 VD------RMMLSVGEETGRLSESLTLVAERYERRERLRSKILSALAYPALVLFFSLAVL 187

Query: 138 FCVSTLVYFTSPGYMNVL 155
             +   V     G    L
Sbjct: 188 LVMFVFVLPKFHGIFARL 205


>gi|229152442|ref|ZP_04280634.1| ComG operon protein 2 [Bacillus cereus m1550]
 gi|228631050|gb|EEK87687.1| ComG operon protein 2 [Bacillus cereus m1550]
          Length = 330

 Score = 35.9 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 60/174 (34%), Gaps = 20/174 (11%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L  +   +  G  +  A+  +  Q     + + +R+IE    G SL +S  ++  +  +
Sbjct: 1   MLKRLGELLEKGYSLLQALEFLQFQLPVEKKVQLQRMIEELKDGKSLHDSFHQLKFHQDM 60

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
               F++       +  G++S AL   S +L  +   +  +  +        + +  + F
Sbjct: 61  LSYLFYA-------EQHGDISFALQQGSALLYKKDKYRRDMMKIMQYPMFLMFFLLIMLF 113

Query: 139 CVSTLVYFTSPGYMNVLINDPRGH-------------MLLGVAAAFMLIGIMVM 179
               ++        +   ++                 ++L      ++ GI+ M
Sbjct: 114 IFKLILLPQVEIVYSSFGSNTPLLTEKILSAIKLLPYIILVAILTVIIGGILYM 167


>gi|12247873|gb|AAG50067.1|AF333233_11 FlaJ [Methanococcus maripaludis]
          Length = 558

 Score = 35.9 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 66/181 (36%), Gaps = 13/181 (7%)

Query: 15  DFPNALDIIVRSVRA-GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +FP+ L  +  SV A G  ++D++  +      P+  +   + +   + ++  ++     
Sbjct: 331 NFPDFLRSLGDSVSAKGGGMTDSLEYLSSNDFGPLTKDLEGLYKRVSIRVNSQKAWRYFG 390

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                  +  FS +    + LGGN   A   + +  R   N++ K +  S+   +     
Sbjct: 391 YDTCSYMIQLFSEMFERCTFLGGNAGVAAHMIGKNFRKIINLR-KAKYQSVSQFSGIMYG 449

Query: 134 GSLPFCVSTLVYFTSPGYMNVLIND---PRGHMLLG-------VAAAFMLI-GIMVMRLM 182
            +    ++          +N L      P   + +         +    LI G++V+  +
Sbjct: 450 LAGGMALTLYASAGVANMVNGLYTSLDIPDTMISIVNIITPEDFSLIAYLIYGVLVIYSI 509

Query: 183 I 183
           +
Sbjct: 510 V 510


>gi|311030866|ref|ZP_07708956.1| comG operon protein 2 [Bacillus sp. m3-13]
          Length = 326

 Score = 35.9 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/151 (9%), Positives = 48/151 (31%), Gaps = 7/151 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +      G  + +A+ ++        +      IE    G S+ + +  +         +
Sbjct: 1   MGDLYTNGYSLLEALELMSIHFEAEKKRSLLEAIEELKKGYSVHQVLESL-------HFN 53

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
                +   SQ  GNL +A  +   +L  ++  + K+ ++        +++  +   V  
Sbjct: 54  QDILSLLFFSQKHGNLGQAFRSGGALLERKRFYRDKIFSILRYPIMLLFLVTIMLVFVQL 113

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           ++        + +       + +       +
Sbjct: 114 VLLPQFHLLFSQMNISLSPIISVFFFLVVQI 144


>gi|29840701|ref|NP_829807.1| general secretion pathway protein F [Chlamydophila caviae GPIC]
 gi|29835051|gb|AAP05685.1| general secretion pathway protein F [Chlamydophila caviae GPIC]
          Length = 391

 Score = 35.9 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 58/171 (33%), Gaps = 8/171 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65
           +R      +       ++  +R+GLP+ ++++ +  Q     +       +E    G SL
Sbjct: 48  RRVRVKNSELIIFSKQMLLLLRSGLPLYESLSSLRYQYQGQRISGLLTAFMENLRSGGSL 107

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S++++             F     +  +  GNL   L N+  +L +R+ M  K+ A    
Sbjct: 108 SQAMAAYPD-----VFDTFYRSAVLAGESVGNLEGCLQNIIVVLEEREQMSKKLMAALSY 162

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
                    ++       V  +       +  +P     +  + +  +   
Sbjct: 163 PIVLLVFSVAVILFFLMGVIPSLKETFENM--EPNTLTSIVFSLSDFVCNY 211


>gi|254492278|ref|ZP_05105452.1| Bacterial type II secretion system protein F domain [Methylophaga
           thiooxidans DMS010]
 gi|224462603|gb|EEF78878.1| Bacterial type II secretion system protein F domain [Methylophaga
           thiooxydans DMS010]
          Length = 217

 Score = 35.9 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/136 (12%), Positives = 42/136 (30%), Gaps = 7/136 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRM 72
                         +AG+P+ +A+  + G + + V  E    + +    G  L++++   
Sbjct: 82  AAIARFSRTFSTMFKAGVPMVEAMTSVAGATGNVVYGEATLDMRDEVSTGTQLNKAML-- 139

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 +        +    +  G+L   LA ++       +         ME     ++
Sbjct: 140 ----DTELFPNMVVQMVAIGEESGSLDSMLAKVADFFEREVDDAVDNMTALMEPIIMVFL 195

Query: 133 IGSLPFCVSTLVYFTS 148
            G +   V  +     
Sbjct: 196 GGIVGTLVIAMYLPIF 211


>gi|56420969|ref|YP_148287.1| DNA transport protein [Geobacillus kaustophilus HTA426]
 gi|56380811|dbj|BAD76719.1| DNA transport machinery [Geobacillus kaustophilus HTA426]
          Length = 338

 Score = 35.9 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 42/137 (30%), Gaps = 7/137 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               + R +  G P+  A+  +  Q+    R E  R ++    GL L  ++  +      
Sbjct: 10  FFTRLGRLLERGYPLGQALEFLAIQAPTHRRMEVERCLQQLRAGLPLFAAVEALS----- 64

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
             V   +  +   ++  G+L   +A     L  +     ++   S        ++  +  
Sbjct: 65  --VDRMAVNLLFFAERHGDLPRGMAETGEALAQKARFHEQLHRFSRYPLFLLSLLIIMLV 122

Query: 139 CVSTLVYFTSPGYMNVL 155
            +   +           
Sbjct: 123 LMEWWLLPQFERAAAAF 139


>gi|240141997|ref|YP_002966507.1| putative Type II secretion system protein [Methylobacterium
           extorquens AM1]
 gi|240011941|gb|ACS43166.1| putative Type II secretion system protein [Methylobacterium
           extorquens AM1]
          Length = 411

 Score = 35.9 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 52/145 (35%), Gaps = 7/145 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           ++    L    R +  GL ++DAVA+                + T               
Sbjct: 70  NEIQLLLTEWARCLDVGLTIADAVAISADGRMGTKLGRTADAVRTALHQG----VPLHRA 125

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                  ++  +  +    +  G L+  L++L+  L ++  +++++++  +      +++
Sbjct: 126 MAEHTPRLTSAALSVIEVGERSGQLASTLSHLTERLGNQGRLRSEIRSALVYPA---FVV 182

Query: 134 GSLPFCVSTLVYFTSPGYMNVLIND 158
            +    V+ L+    P    ++ + 
Sbjct: 183 LTAFAVVAILLQAVVPAIDEIVGDH 207


>gi|294627650|ref|ZP_06706232.1| type II secretion system protein F [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598002|gb|EFF42157.1| type II secretion system protein F [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 400

 Score = 35.9 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMP 77
               +   V +GLP+ + + +      +         ++     G SL+ ++ R   + P
Sbjct: 268 MARTLAIMVNSGLPLMEGLMIAARTVDNRALRLATDTMVTAIREGGSLAAALKRAAVFPP 327

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     ++   +  G L+  L   +  L              +       + G + 
Sbjct: 328 ------TLLYMASSGENSGRLAPMLERAADYLEREFEAFTTAAMSLLGPAIIVLLGGVVA 381

Query: 138 FCVSTLVYFT 147
             V +++   
Sbjct: 382 VIVLSILLPI 391


>gi|149925602|ref|ZP_01913866.1| General secretion pathway protein F [Limnobacter sp. MED105]
 gi|149825719|gb|EDM84927.1| General secretion pathway protein F [Limnobacter sp. MED105]
          Length = 404

 Score = 35.9 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 68/187 (36%), Gaps = 11/187 (5%)

Query: 3   HLIKKRTAKFLDDFPN-----ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVI 56
            +  K+  +F  +  N         +   ++A L ++ A+A +V Q+  P+  E    + 
Sbjct: 49  KMTGKKAGRFDRELSNREVVLLTRQLASLLQARLALAQALAALVEQAEKPLIRERINSIR 108

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
                G  LS+++++  +  P               +  G+L   L+ L+  L  R+ ++
Sbjct: 109 SEVVSGTPLSQALAQYPKAFP-----EMYVATVAAGENTGDLGGVLSKLADALEARQALQ 163

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            KV A  +       +   +   + T V             +     ++ +A + +L   
Sbjct: 164 QKVSAAFIYPAIVTLVALMVVIGLLTYVVPQVVSVFESSNQELPTLTVVMIALSDLLRDW 223

Query: 177 MVMRLMI 183
             +  ++
Sbjct: 224 GWLMALV 230



 Score = 34.3 bits (77), Expect = 8.8,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 40/126 (31%), Gaps = 7/126 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V +G+P+  A+A       +         V E    G  LS+++ +   + P    
Sbjct: 277 LSILVGSGVPILKALAAANRTLGNSALQLAMVDVQERVKEGSGLSKAMGKSGLFPP---- 332

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
               T +    +  G L+  L   S   R     KA      ME      +   +   V 
Sbjct: 333 --VLTHLVASGEATGQLAAMLERASESQRTEVERKAMWLTSLMEPILILVMGLIVLLIVL 390

Query: 142 TLVYFT 147
            ++   
Sbjct: 391 AVMMPI 396


>gi|195402457|ref|XP_002059821.1| GJ15030 [Drosophila virilis]
 gi|194140687|gb|EDW57158.1| GJ15030 [Drosophila virilis]
          Length = 2200

 Score = 35.9 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 5/106 (4%)

Query: 13   LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             +    A   +VR++ AG+ +      I    S  +   F   +        +  +  ++
Sbjct: 1242 ENRMRTAAHQMVRNLAAGMAMITGKDEIARAISQNLHKAFMAALTGVQSMADMQAASMQL 1301

Query: 73   VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
                   E          ++    +  E    LS     RK  + +
Sbjct: 1302 AN-----ENVELVCAFIQKTSAEKSALEIDRRLSTDFETRKIAREE 1342


>gi|124514590|gb|EAY56102.1| putative type IV pilus biosynthesis protein [Leptospirillum
           rubarum]
          Length = 362

 Score = 35.9 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
             L  +   + AG+PV  A   I  QSS  +R+    V+        L E++ R     P
Sbjct: 228 EFLTGLSAMLEAGIPVIRAFDQIRRQSSPYLRARIEPVMRIYKRTGKLGEAMDRAGTGFP 287

Query: 78  LQE 80
            +E
Sbjct: 288 SRE 290


>gi|88809346|ref|ZP_01124854.1| pili biogenesis protein [Synechococcus sp. WH 7805]
 gi|88786565|gb|EAR17724.1| pili biogenesis protein [Synechococcus sp. WH 7805]
          Length = 417

 Score = 35.9 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/136 (11%), Positives = 44/136 (32%), Gaps = 7/136 (5%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRY 75
                I     RAG+P+  ++ +    + +  +             G+ LS +++R    
Sbjct: 284 AQFCRIFSSLTRAGVPILMSLEISSETAGNSIISDAILESRALVQEGVLLSTALTR---- 339

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
              + +   +  +    +  G + + L+ ++    D  +   K     +E      + G 
Sbjct: 340 --QKVLPDMALSMLSIGEETGEMDQMLSKVADFYEDEVSASVKALTSMLEPAMIVVVGGI 397

Query: 136 LPFCVSTLVYFTSPGY 151
           +   +  +       +
Sbjct: 398 VGSILLAMYLPMFTVF 413


>gi|297297125|ref|XP_002804967.1| PREDICTED: fibronectin type III and SPRY domain-containing protein
           2 isoform 2 [Macaca mulatta]
 gi|297297127|ref|XP_002804968.1| PREDICTED: fibronectin type III and SPRY domain-containing protein
           2 isoform 3 [Macaca mulatta]
          Length = 682

 Score = 35.9 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/105 (11%), Positives = 37/105 (35%), Gaps = 11/105 (10%)

Query: 31  LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISV 90
           +P+++A+     +    +    +++I+ ++    L E    +      QE +        
Sbjct: 181 IPLNEALESAKDEIHKNMYKLEKQIIQMENFANHLEEVFITVEENFGKQEQN-------- 232

Query: 91  QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                 + +E L  L++   ++     + +   +EA     +   
Sbjct: 233 ---FESHYNEILETLAQKYEEKIQALGEKKKEKLEALYGQLVSCG 274


>gi|134046757|ref|YP_001098242.1| flagellar assembly protein J [Methanococcus maripaludis C5]
 gi|132664382|gb|ABO36028.1| type II secretion system protein [Methanococcus maripaludis C5]
          Length = 558

 Score = 35.9 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 50/146 (34%), Gaps = 2/146 (1%)

Query: 15  DFPNALDIIVRSVRA-GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +FP+ L  +  SV A G  ++D++  +      P+  +   + +   + ++  ++     
Sbjct: 331 NFPDFLRSLGDSVSAKGGGMTDSLEYLSSNDFGPLTKDLEGLYKRVSIRVNSQKAWRYFG 390

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                  +  FS +    + LGGN   A   + +  R   N++        +     + +
Sbjct: 391 YDTCSYMIQLFSEMFERCTFLGGNAGLAAHMIGKNFRKIINLRRSKYQSVSQFSGIMYGL 450

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDP 159
                 ++          +N L    
Sbjct: 451 SGGM-ALTLYASAGVANMVNGLYTTL 475


>gi|109082192|ref|XP_001082154.1| PREDICTED: fibronectin type III and SPRY domain-containing protein
           2 isoform 1 [Macaca mulatta]
          Length = 727

 Score = 35.9 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/105 (11%), Positives = 37/105 (35%), Gaps = 11/105 (10%)

Query: 31  LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISV 90
           +P+++A+     +    +    +++I+ ++    L E    +      QE +        
Sbjct: 181 IPLNEALESAKDEIHKNMYKLEKQIIQMENFANHLEEVFITVEENFGKQEQN-------- 232

Query: 91  QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                 + +E L  L++   ++     + +   +EA     +   
Sbjct: 233 ---FESHYNEILETLAQKYEEKIQALGEKKKEKLEALYGQLVSCG 274


>gi|152976636|ref|YP_001376153.1| type II secretion system protein [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152025388|gb|ABS23158.1| type II secretion system protein [Bacillus cytotoxicus NVH 391-98]
          Length = 344

 Score = 35.9 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 44/128 (34%), Gaps = 7/128 (5%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
            +   ++ GL V +A+ ++  Q      + E  R+ E    G  L   I +         
Sbjct: 217 QLSGLLQGGLSVLEALTLMSKQRHHPFFQYEAARIEERLMAGEPLDSIIMKSG------Y 270

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
                + +    Q  GNL+  L + S ++ ++   K     + ++      I   + F  
Sbjct: 271 YEADLSYVIAHGQKNGNLAAELGDYSELMIEKMEGKMNRIFVVIQPLLFVCIGIIVVFMY 330

Query: 141 STLVYFTS 148
             ++    
Sbjct: 331 LAMIMPMF 338



 Score = 34.3 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 55/154 (35%), Gaps = 8/154 (5%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           ++  +  +     L  +   +  G  +  A+  +  Q S   R + + + E    G SL 
Sbjct: 4   RKKWRLDEQV-MLLKRLGDLLEKGYSLLQALEFLQFQLSSQKRLQLQHMTEELKNGQSLH 62

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++  +++ +  +    F++       Q  G++S AL   S +L+ +   + ++  +    
Sbjct: 63  DAFHQLMFHPDILSYLFYA-------QKHGDISFALRQGSLLLQRKNKHQKEMIKVLRYP 115

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
              +  +  +      ++        + L     
Sbjct: 116 IFLSVFLIGILAVFHFILLPQFEILYSSLRTSTT 149


>gi|221202533|ref|ZP_03575563.1| type IV fimbrial assembly protein PilC [Burkholderia multivorans
           CGD2M]
 gi|221177628|gb|EEE10045.1| type IV fimbrial assembly protein PilC [Burkholderia multivorans
           CGD2M]
          Length = 313

 Score = 35.9 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 41/130 (31%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   + AG+P++DA A +   +          ++      G  L++++     +  
Sbjct: 183 WCRSLATLLGAGVPLADAFATLERTAGHPVFERASTQIAARVLRGARLADAMQASGCFPD 242

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                         ++  G L   LA+++ +   + + +    A   E      +   + 
Sbjct: 243 DIVQP------IAVAEETGALDTMLADIATLSEHQLDARIDTLAALGEPLIVIVLGALVG 296

Query: 138 FCVSTLVYFT 147
             V  +    
Sbjct: 297 GLVIAMYLPI 306


>gi|172056918|ref|YP_001813378.1| type II secretion system protein [Exiguobacterium sibiricum 255-15]
 gi|171989439|gb|ACB60361.1| type II secretion system protein [Exiguobacterium sibiricum 255-15]
          Length = 312

 Score = 35.9 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 54/162 (33%), Gaps = 16/162 (9%)

Query: 30  GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS 89
           G+   +A+ +++      +    R + E    G  LS ++  +        +      + 
Sbjct: 4   GISTKEALDILIRFEDPLLIPVIREIQERLQQGNRLSFALEPL-------NLPTALQQLL 56

Query: 90  VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF--- 146
                       L  + R+L     MK K   ++      A  +  L    +  V+    
Sbjct: 57  RVGDQTERPLMILRQVIRLLELESQMKKKFWKMARYPIVLAVSLLLLFMFYALYVFPSLL 116

Query: 147 ------TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
                 T P ++  LI+    +++       M+  I+++R +
Sbjct: 117 EMSNPATLPPFVRPLIHPSAKYVMAFAPLTTMVGLILLIRRI 158



 Score = 34.3 bits (77), Expect = 7.7,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 43/145 (29%), Gaps = 11/145 (7%)

Query: 8   RTAKFLDDFPN-----ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           R                   +   + AG  + +A   +    +   +  ++ +   Q  G
Sbjct: 165 RMKMIQKMLRLYYSYLFTIEVGSFIDAGFSLEEAFHALEQGQTGKKKQMYQMLHHRQKSG 224

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             LSE++           +   +  +   ++  G+L   L   + +L +    + + + L
Sbjct: 225 QPLSEAMQ------DENIIDVETVGLVHIARESGDLGPLLLEQAALLHESIEEEVEKKLL 278

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFT 147
            +E      +          L Y  
Sbjct: 279 LIEPALYGGLTVMTGTLFLILYYPI 303


>gi|71899811|ref|ZP_00681961.1| type II secretion system protein [Xylella fastidiosa Ann-1]
 gi|71730402|gb|EAO32483.1| type II secretion system protein [Xylella fastidiosa Ann-1]
          Length = 297

 Score = 35.9 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 44/136 (32%), Gaps = 5/136 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                        + RAG+P+ +A+ ++ G + +     +   +      +S+  SI+  
Sbjct: 160 NSALARFSRTTAVTFRAGVPLVEALGIVAGATGN---KVYSDAVFRMRDDVSVGYSINMS 216

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           +R + +         ++   +  G L   L  ++       +      +  +E     +I
Sbjct: 217 MRQVGI--FPHMVVQMASIGEEAGALDAMLFKVAEYYEQEVSNAVDGLSSLLEPLIMVFI 274

Query: 133 IGSLPFCVSTLVYFTS 148
              +   V  +     
Sbjct: 275 GVIVGGMVIAMYLPIF 290


>gi|187933799|ref|YP_001886614.1| pilus biogenesis protein [Clostridium botulinum B str. Eklund 17B]
 gi|187721952|gb|ACD23173.1| bacterial type II secretion system protein F [Clostridium botulinum
           B str. Eklund 17B]
          Length = 358

 Score = 35.9 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 53/158 (33%), Gaps = 7/158 (4%)

Query: 6   KKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGL 63
           KKR  K   ++       + +  + G+ +++A+ +I     +   +     +++    G+
Sbjct: 12  KKRYKKINYNELSLISGSLAQLYKDGIKINEALNLIKEVVLTKEYKRSISDIVKNIENGM 71

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           +LS +        P      F   I    +  G L EAL  L      R  +   + +  
Sbjct: 72  TLSNAFDEKRELYPK-----FFIGIISIGENSGKLYEALKTLKNYYGKRSFINKYIISSL 126

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
                    I +L   ++ +V     G    +   P  
Sbjct: 127 TYPMILMISILALMVFLTLVVIPNFRGIYLSIGIKPPF 164


>gi|218234987|ref|YP_002369047.1| comG operon protein 2 [Bacillus cereus B4264]
 gi|218162944|gb|ACK62936.1| comG operon protein 2 [Bacillus cereus B4264]
          Length = 343

 Score = 35.9 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 60/174 (34%), Gaps = 20/174 (11%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L  +   +  G  +  A+  +  Q     + + +R+IE    G SL +S  ++  +  +
Sbjct: 14  LLKRLGELLEKGYSLLQALEFLQFQLPVEKKVQLQRMIEELKDGKSLHDSFHQLKFHQDM 73

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
               F++       +  G++S AL   S +L  +   +  +  +        + +  + F
Sbjct: 74  LSYLFYA-------EQHGDISFALQQGSALLYKKDKYRRDMMKIMQYPMFLMFFLLIMLF 126

Query: 139 CVSTLVYFTSPGYMNVLINDPRGH-------------MLLGVAAAFMLIGIMVM 179
               ++        +   ++                 ++L      ++ GI+ M
Sbjct: 127 IFKLILLPQVEIVYSSFGSNTPLLTEKILSAIKLLPYIILVAILTVIIGGILYM 180


>gi|217322870|ref|YP_002327090.1| pilin biogenesis protein (pilC) [Acinetobacter baumannii
           AB307-0294]
 gi|213986017|gb|ACJ56316.1| pilin biogenesis protein (pilC) [Acinetobacter baumannii
           AB307-0294]
          Length = 235

 Score = 35.9 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 40/129 (31%), Gaps = 7/129 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +  +  AG+P+ DA+    G +++ +      ++ E    G  L  ++    R     
Sbjct: 107 RTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVATGQQLQFAMRVSNR----- 161

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +  +    +  G L   L  ++    +  +         ME    A +   +   
Sbjct: 162 -FPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGL 220

Query: 140 VSTLVYFTS 148
           V  +     
Sbjct: 221 VIAMYLPIF 229


>gi|284166396|ref|YP_003404675.1| hypothetical protein Htur_3137 [Haloterrigena turkmenica DSM 5511]
 gi|284016051|gb|ADB62002.1| protein of unknown function DUF6 transmembrane [Haloterrigena
           turkmenica DSM 5511]
          Length = 331

 Score = 35.9 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 18/49 (36%)

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
              +   +  +    SP    +L  D  G  +L   A    +G +++R 
Sbjct: 128 AVGMGLGLLGVALVVSPDPAALLGGDAFGRAILFAGAICAALGAVLIRR 176


>gi|305432261|ref|ZP_07401424.1| general secretory pathway protein F [Campylobacter coli JV20]
 gi|304444609|gb|EFM37259.1| general secretory pathway protein F [Campylobacter coli JV20]
          Length = 391

 Score = 35.9 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 52/170 (30%), Gaps = 9/170 (5%)

Query: 1   MKHLIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           +K + K    +  D  F      +      G+ + DA+  +             ++ +  
Sbjct: 40  IKEIQKASFKRLDDARFILFFQELSLLCEVGISIKDALKEL---DKIYSHKMIAKLCDNL 96

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           +LG +LS +       +   E+      +   SQ  G LSE    +SR+ ++    + +V
Sbjct: 97  NLGQNLSLAFENANFGLTHAEL-----ALIKTSQNTGKLSEIFMQISRLRQNNVENEQRV 151

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
           +            + +    +   V          L         L +  
Sbjct: 152 KKALRYPLIVFLSVCAAFVLLMLFVVPNFKDLFEDLNLALPFITELIIYI 201


>gi|196231664|ref|ZP_03130521.1| type II secretion system protein [Chthoniobacter flavus Ellin428]
 gi|196224136|gb|EDY18649.1| type II secretion system protein [Chthoniobacter flavus Ellin428]
          Length = 326

 Score = 35.9 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 45/154 (29%), Gaps = 11/154 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           + + VR G+P   A+  +   +    R       ++   G ++ E+ + M   +   E  
Sbjct: 15  LAQLVRQGIPFPAALNKLAPGARGDTRRLIEAARKSLASGHTVGEAFTAMPSVVSSLE-- 72

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
              + +    +  G L   L +LS         +                +  L F +  
Sbjct: 73  ---SAVVSAVEKSGQLDRGLRDLSEYFAALDKARRDFVMRCAYP------VFMLHFGILL 123

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
           L   T             G   L V A   +I  
Sbjct: 124 LNAPTLFTQSAAAYGRQVGTAFLFVYACVAVIAF 157


>gi|163785074|ref|ZP_02179791.1| fimbrial assembly protein PilC [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879655|gb|EDP73442.1| fimbrial assembly protein PilC [Hydrogenivirga sp. 128-5-R1-1]
          Length = 171

 Score = 35.9 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 9/100 (9%), Positives = 24/100 (24%), Gaps = 6/100 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                       +  G+P+  A+ +    + + +  E                S      
Sbjct: 36  AIAKFARTFATLIAGGVPIIRALEIASKTTGNIIIEEAIMKARDDVEQGKPLWSSL---- 91

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
               +        +    +  G + E L  ++    D  +
Sbjct: 92  --DPKIFPPIFISMLKVGEETGRMDEMLDTIAEFFEDEVD 129


>gi|269302608|gb|ACZ32708.1| putative general secretion pathway protein F [Chlamydophila
           pneumoniae LPCoLN]
          Length = 391

 Score = 35.9 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 62/197 (31%), Gaps = 20/197 (10%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ- 59
           ++ +  +R +    +       ++  +R+GLP+ +++  +  Q                 
Sbjct: 42  IREVALRRMSIKSTELIVFTKQLLLLLRSGLPLYESLVSLRDQYHGQKMGLLLTSFMETL 101

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G SLS++++             F        +  GNL   L N+  +L +R  +  K+
Sbjct: 102 RSGGSLSQAMAAHPNIFDH-----FYCSGVAAGESVGNLEGCLQNIIVVLEERAQITKKM 156

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML--------------L 165
                          ++       V          +       ++              L
Sbjct: 157 IGALSYPCVLLVFSFAVMLFFLLGVIPALKETFENMEVKGLTKIVFGVSDCLSAYRYLFL 216

Query: 166 GVAAAFMLIGIMVMRLM 182
           G A+A + +GI++   +
Sbjct: 217 GFASALITVGILMRHRI 233


>gi|239934067|ref|ZP_04691020.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
 gi|291442506|ref|ZP_06581896.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
 gi|291345401|gb|EFE72357.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
          Length = 294

 Score = 35.9 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/105 (9%), Positives = 34/105 (32%), Gaps = 1/105 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   K+   +F       LD++     A    ++A+               +  +    
Sbjct: 140 VRDQAKRAREEFAHALAAYLDLVALKRAADAGPTEALERAAAVGQGWPFLYLQSALRRAR 199

Query: 61  -LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN 104
              +   ++++ +     L  +   + ++   +  G  + +AL  
Sbjct: 200 LEKIPPYQALTDLAEEYDLPVLDDVADIMRGSATDGAAVYKALRA 244


>gi|62185515|ref|YP_220300.1| general secretion pathway protein F [Chlamydophila abortus S26/3]
 gi|62148582|emb|CAH64354.1| general secretion pathway protein F [Chlamydophila abortus S26/3]
          Length = 391

 Score = 35.9 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 58/185 (31%), Gaps = 12/185 (6%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R      +       ++  +R+GLP+ + ++ +  Q      S    V   +  G    
Sbjct: 48  RRVRLKNSELIIFSKQMLLLLRSGLPLYETLSSLRDQYQGQSMSGLLTVFMEKLRGGG-- 105

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
                            F     +  +  GNL   L N+  +L +R+ M  K+ A     
Sbjct: 106 --SLSQAMATYPGIFDNFYRSAVLAGESVGNLEGCLQNIIIVLEEREQMTKKLTAALSYP 163

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--------AAFMLIGIMV 178
                   ++     T V  +       +  +    ++ G++             +G+ +
Sbjct: 164 IVLLVFSLAVILFFLTGVIPSLKETFENMEPNTLTSIVFGLSDFVCKYKYLILGFLGLGM 223

Query: 179 MRLMI 183
           + ++ 
Sbjct: 224 VSIIA 228


>gi|89099208|ref|ZP_01172086.1| ComG operon protein 2 [Bacillus sp. NRRL B-14911]
 gi|89086054|gb|EAR65177.1| ComG operon protein 2 [Bacillus sp. NRRL B-14911]
          Length = 343

 Score = 35.9 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/171 (11%), Positives = 52/171 (30%), Gaps = 9/171 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++ R     +     L      ++ G P+S+A+  +     D  ++     +     G  
Sbjct: 1   MRTRKWTLDEQ-AGFLKRTGELLQRGYPLSEAIESLAYHLPDYRKAAISNSLNDLKEGHP 59

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
               ++ +         +         ++  G L+EA  + S I+  R    + ++ +  
Sbjct: 60  FYRVLTNLK-------FNPTLIGYVYFAEQHGGLAEAFIDGSAIMEKRSKEISSLRKILY 112

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL-INDPRGHMLLGVAAAFMLI 174
                      L F V   +        + + ++       + +A     I
Sbjct: 113 YPLFLMSATSILFFIVQQTLLPRFTSLFSSMDLDTNFFTEAVMLAGTLFPI 163


>gi|307106352|gb|EFN54598.1| hypothetical protein CHLNCDRAFT_58125 [Chlorella variabilis]
          Length = 1063

 Score = 35.5 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 6/89 (6%), Positives = 20/89 (22%), Gaps = 2/89 (2%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL--GLSLSESISRMVRY 75
           + L  ++    +GL +  A+  +  +                 +     +  +       
Sbjct: 201 DLLAQLILDYESGLSIEAAIQRVRTRMEAWRVQVLLDFYGMSRIGGQHRVLPADVEAAAK 260

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALAN 104
                    +T +     +       L  
Sbjct: 261 HDWPLPFLSATYVRTMLDVHMEERRQLKR 289


>gi|269138010|ref|YP_003294710.1| type II secretory pathway component PulF [Edwardsiella tarda
           EIB202]
 gi|267983670|gb|ACY83499.1| type II secretory pathway component PulF [Edwardsiella tarda
           EIB202]
 gi|304558057|gb|ADM40721.1| Type IV fimbrial assembly protein PilC [Edwardsiella tarda FL6-60]
          Length = 380

 Score = 35.5 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/140 (11%), Positives = 45/140 (32%), Gaps = 6/140 (4%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            + +  +   + AG+P+  A+ ++         R+   ++      GL+LS+++      
Sbjct: 43  SDFIAQLADLLEAGVPLLSALDLMANGHPHAEWRALIHQLSHEVADGLTLSQALRGQSAI 102

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P       +       +  G L+E    L+R  +    ++ ++            +   
Sbjct: 103 FPPLYGRALAAA-----EQSGALAEVCRQLARQQQQAHALRQRLLRALRYPLFLLSVALL 157

Query: 136 LPFCVSTLVYFTSPGYMNVL 155
           +   +   +          L
Sbjct: 158 IALGMLLTLLPQFAQLYASL 177


>gi|156741387|ref|YP_001431516.1| hypothetical protein Rcas_1403 [Roseiflexus castenholzii DSM 13941]
 gi|156232715|gb|ABU57498.1| conserved hypothetical protein [Roseiflexus castenholzii DSM 13941]
          Length = 316

 Score = 35.5 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/192 (8%), Positives = 60/192 (31%), Gaps = 11/192 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIET- 58
           +    ++   +     P  +  +   +RAG  +  A+  ++      P+++E+   +E  
Sbjct: 119 LWFEEQRYATRIDATLPATVGRLEAQLRAGSGLQPAIEKVIADMPASPLKAEWSWFLERL 178

Query: 59  -----QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDR 112
                     + +   + +    P +  + F + + +        L + +      ++  
Sbjct: 179 GQPLAAGALATATMVCAALRAQTPSRRHATFLSHLEIAIDQPHAALVQRVRAAYEAMQAS 238

Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH---MLLGVAA 169
               + +     + + +   +  +   ++  ++               G     +L +  
Sbjct: 239 DRRASMLATELAQMRNTGIALFLINVGITLYLFIVQHERFLTAYRSNIGVGVGAVLALVV 298

Query: 170 AFMLIGIMVMRL 181
              LIG  ++  
Sbjct: 299 GAPLIGGYLLGR 310


>gi|325915068|ref|ZP_08177397.1| Type II secretion system protein F [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538766|gb|EGD10433.1| Type II secretion system protein F [Xanthomonas vesicatoria ATCC
           35937]
          Length = 401

 Score = 35.5 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/129 (11%), Positives = 37/129 (28%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   V +GLP+ + + +      +         + T  +  ++ E  S        
Sbjct: 269 MARTLAIMVNSGLPLMEGLMIAARTVDNRALR-----LATDSMVTAIREGGSLAAAMKRA 323

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    ++   + GG L+  L   +  L              +E      + G +  
Sbjct: 324 GVFPPTLLYMASSGEKGGRLAPMLERAADYLEREFESFTTAAMSLLEPAIIVLLGGVVAV 383

Query: 139 CVSTLVYFT 147
            V +++   
Sbjct: 384 IVLSILLPI 392


>gi|311244924|ref|XP_003121626.1| PREDICTED: LOW QUALITY PROTEIN: spectrin beta chain, brain 4-like
            [Sus scrofa]
          Length = 3724

 Score = 35.5 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/138 (9%), Positives = 42/138 (30%), Gaps = 10/138 (7%)

Query: 7    KRTAKFLDDFPNALDIIVRSVRAGLPV------SDAVAVIVGQSSDPVRSEFRRVIETQH 60
            +R      +       +   +  G  +        A+AV   Q +     E  ++   Q 
Sbjct: 2019 RRQEGLERELVGTERQLRELLETGGTMQKLGPRPQALAVQQRQQALEQAWEALKLHVEQR 2078

Query: 61   LGLSLSESISRMVRYMPLQEVSFFSTVIS---VQSQLGGNLSEALANLSRILRDRKNMKA 117
                L ++      +  + + + +   +       +       +L  LS   + +  ++A
Sbjct: 2079 RTH-LEQAQLLAHFHTAVWDYTSWVASVWPELQDGESSQEPHNSLLKLSAHQQLQAELQA 2137

Query: 118  KVQALSMEAKASAWIIGS 135
            + +      +    ++ +
Sbjct: 2138 REELHQHATQLGQQVLLA 2155


>gi|15895249|ref|NP_348598.1| hypothetical protein CA_C1978 [Clostridium acetobutylicum ATCC 824]
 gi|15024959|gb|AAK79938.1|AE007702_5 Predicted membrane protein [Clostridium acetobutylicum ATCC 824]
 gi|325509395|gb|ADZ21031.1| membrane protein [Clostridium acetobutylicum EA 2018]
          Length = 279

 Score = 35.5 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSE 67
             K   D  +  D+I     AG+ +  A+  +     S  ++    R+    +L  ++ +
Sbjct: 128 KNKIRLDLADVYDLITIQTIAGVSIGHALLEVNTVCKSKRLKKSLIRLAAKINLSKNIEK 187

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++    +   + E+  F  VI      G +  EAL + S  L+   +     +   ++  
Sbjct: 188 ALDEFNQEYDMHEIDAFVAVIKESITSGVS-EEALDDQSSALKTINSFYTASETEKIDIH 246

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMN 153
                +  L   + T+ Y      M 
Sbjct: 247 VLIISMLLLGGIICTIYYCIGSDLMQ 272


>gi|325280179|ref|YP_004252721.1| Type II secretion system F domain [Odoribacter splanchnicus DSM
           20712]
 gi|324311988|gb|ADY32541.1| Type II secretion system F domain [Odoribacter splanchnicus DSM
           20712]
          Length = 350

 Score = 35.5 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/130 (10%), Positives = 33/130 (25%), Gaps = 4/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
              ++     +G+P+  A+ ++    +     +   VI        L  +          
Sbjct: 218 FCKLLRLLYGSGVPLLHALELLRDIITFYPYRQSFGVIGEVLRRGGLFAAGLA----RFP 273

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +   +L E L      L      + K     +E      + G +  
Sbjct: 274 HIYDRKLCALLRVGEETNHLGEMLGRQGDRLTQELEYRLKQLGGFLEPVLILGVGGLVAL 333

Query: 139 CVSTLVYFTS 148
            +  +     
Sbjct: 334 VLIAMYLPMF 343


>gi|302387861|ref|YP_003823683.1| hypothetical protein Closa_3535 [Clostridium saccharolyticum WM1]
 gi|302198489|gb|ADL06060.1| conserved hypothetical protein [Clostridium saccharolyticum WM1]
          Length = 291

 Score = 35.5 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/153 (11%), Positives = 46/153 (30%), Gaps = 2/153 (1%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            LI  R      + P  +  +V+ ++A   V   +      +   +++E           
Sbjct: 137 KLITARRQDIEYELPRFVSTLVQELKASRDVLSILEHYQKNAGKAMKNELAITTSDMR-T 195

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            +   +++R    +    +S     +    +    +      LS  L+  +  + K  A+
Sbjct: 196 GNYEGALARFEARVSSAMLSDIVRGLIGVLRGDDGVV-FFQMLSHDLKQLELQRLKRLAM 254

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
               K   +    L   +   +       +  +
Sbjct: 255 ERPPKIRKFSFLLLGCMLLLYMGVMGYQILGAM 287


>gi|289650992|ref|ZP_06482335.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 228

 Score = 35.5 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 38/128 (29%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +  +  AG+P+ +A+  + G + + V          Q +   +S  +           
Sbjct: 100 RTLSTTFAAGVPLVEALDSVAGATGNVVFK-----NAVQKVKQDVSTGMQLNFSMRSTGV 154

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
               +  ++   +  G L   L  ++    D  +         ME    A +   +   V
Sbjct: 155 FPTLAIQMTAIGEESGALDTMLDKVATYYEDEVDNMVDNLTSLMEPMIMAVLGVIVGGLV 214

Query: 141 STLVYFTS 148
             +     
Sbjct: 215 IAMYLPIF 222


>gi|258514754|ref|YP_003190976.1| hypothetical protein Dtox_1489 [Desulfotomaculum acetoxidans DSM
           771]
 gi|257778459|gb|ACV62353.1| hypothetical protein Dtox_1489 [Desulfotomaculum acetoxidans DSM
           771]
          Length = 289

 Score = 35.5 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/154 (11%), Positives = 49/154 (31%), Gaps = 2/154 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            +K++  +   + P  +  I ++++A   V   +      +      E   +        
Sbjct: 136 RLKEKREQIEGELPRFVSTIEQTLKASRDVLAMMENYKKNAGPAFAGELDVLTADMRS-S 194

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S   +++R    +    +S     +    +   +       L+   +  +  + K QA  
Sbjct: 195 SYEAALTRFEARLNSPMLSDVVRGLIGVLRGDDSAV-YFQMLAHDFKALELQRLKGQAQK 253

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           +  K   +    L   + T +   +   ++ L  
Sbjct: 254 IPPKIRIFSFIMLMCFLLTYMAIIAMQILSSLGT 287


>gi|290559354|gb|EFD92688.1| hypothetical protein BJBARM5_0600 [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 705

 Score = 35.5 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/161 (9%), Positives = 49/161 (30%), Gaps = 7/161 (4%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
                 F  A+  +   +  G P    +  +         S+F  +       L +S   
Sbjct: 437 NSIESSFGAAMSQMSSFLSQGYPPEATLVKVEENMKGTPVSDFFEITVNNIRKLGMSLKD 496

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN-------LSRILRDRKNMKAKVQAL 122
           +                +++       + ++++ N       +S+ L + + ++ +V++L
Sbjct: 497 AFFNATNGSTRFFPSPMILASTKIFLSSAAKSVRNASVATLYVSKHLANLRRIEQQVRSL 556

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
             E  +   +   L       +       +  ++    G +
Sbjct: 557 LEEVTSGMRVEVGLISPAMAGIVIGLTTLIGTVLTSLSGSI 597


>gi|190571855|ref|YP_001967632.1| putative membrane protein [Bifidobacterium breve]
 gi|160213024|gb|ABX10956.1| putative membrane protein [Bifidobacterium breve]
          Length = 197

 Score = 35.5 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 7/68 (10%)

Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           +    +AK +A   +   S  +  +L +    ++ F        L  D  G + L VA  
Sbjct: 10  ETAKAQAKQEAKKNQPDVSGTVGLTLVWLAVIVLPFM-------LHADIIGWLALAVAVI 62

Query: 171 FMLIGIMV 178
            ++ GI  
Sbjct: 63  LLVAGIFW 70


>gi|258540644|ref|YP_003175143.1| ABC transporter permease [Lactobacillus rhamnosus Lc 705]
 gi|257152320|emb|CAR91292.1| ABC transporter, permease protein [Lactobacillus rhamnosus Lc 705]
          Length = 352

 Score = 35.5 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 3/75 (4%)

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             +A + AL  +    A    ++   +  L  F  P  M     +P   + +  A   M 
Sbjct: 271 RTRAIIAALFWQILMLAVTGVAIGAGLLGLTQFILPKAM-PFYANPPLFIAIAAALILMS 329

Query: 174 I--GIMVMRLMINFD 186
           +  G+  +R +++ D
Sbjct: 330 LVGGLFSLRRILHID 344


>gi|123443691|ref|YP_001007662.1| type IV pilus integral membrane protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090652|emb|CAL13523.1| type IV pilus integral membrane protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 369

 Score = 35.5 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 61/187 (32%), Gaps = 20/187 (10%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHLGLSLSES 68
           ++   F +AL  +   +  G P+  A+ +I             +  +++     LS + +
Sbjct: 30  RYRLQFYDALRFL---LENGNPLGVALQMIAEVHTDFGKHWHPYGDLVDDCLESLSDNGA 86

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                  +        +  +       G L EAL    +++  R+ +   V  +S+    
Sbjct: 87  GRTFENVLAAWGPLEEA-ALISAGMRSGKLPEALLQAGKLVEARRRILMLVSKMSLYPLL 145

Query: 129 SAWIIGSLPFCVSTLVYFTSP------------GYMNVL--INDPRGHMLLGVAAAFMLI 174
              + G +       +  T              G+M+ L    D +G   +G  A  + +
Sbjct: 146 LFCLGGGMLVINGAYLIPTLRKLSDPQDWSGALGFMHALANFTDRQGTAAVGAVAILIGL 205

Query: 175 GIMVMRL 181
            +  +  
Sbjct: 206 VLWSIPR 212


>gi|113955237|ref|YP_729258.1| type IV pilus assembly protein PilC [Synechococcus sp. CC9311]
 gi|113882588|gb|ABI47546.1| type IV pilus assembly protein PilC [Synechococcus sp. CC9311]
          Length = 426

 Score = 35.5 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/136 (11%), Positives = 43/136 (31%), Gaps = 7/136 (5%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRY 75
                I     RAG+P+  ++ +    + +  +             G+ LS +++R    
Sbjct: 293 AQFCRIFSSLTRAGVPILMSMEISSETAGNSIISDAILDSRTLVQEGVLLSTALTR---- 348

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
              + +   +  +    +  G +   L+ ++    D  +   K     +E      + G 
Sbjct: 349 --QKVLPDMALSMLSIGEETGEMDRMLSKVADFYEDEVSTSVKALTSMLEPAMIVVVGGI 406

Query: 136 LPFCVSTLVYFTSPGY 151
           +   +  +       +
Sbjct: 407 VGSILLAMYLPMFTVF 422


>gi|91785276|ref|YP_560482.1| type II secretion system, subunit F / Type IV pilus assembly
           protein TapC/PilC [Burkholderia xenovorans LB400]
 gi|91689230|gb|ABE32430.1| type II secretion system, subunit F / Type IV pilus assembly
           protein TapC/PilC [Burkholderia xenovorans LB400]
          Length = 409

 Score = 35.5 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 46/158 (29%), Gaps = 2/158 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            D       +   +RAGLP++ A+ ++    +   +   R V                  
Sbjct: 68  ADITLFTRQLASLLRAGLPLAPALDLLAQAQASRRQGMPRIVGALARDITG--GLRFSAA 125

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                 + +     +    +  G L+  LA ++         +AKV+A      A   + 
Sbjct: 126 LQRHPAQFNALYCQLVEVGEAAGALAAVLARIAEDRERAAAQRAKVRAALTYPVAILVLA 185

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
            ++   +   V  T     +             +A + 
Sbjct: 186 LAITAALLVWVVPTFQQIFDGFGARLPAPTQFVLALSS 223


>gi|269986816|gb|EEZ93094.1| hypothetical protein BJBARM4_0292 [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 705

 Score = 35.5 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/160 (10%), Positives = 49/160 (30%), Gaps = 7/160 (4%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
                F  A+  +   +  G P    +  +         +EF  V       L +S   +
Sbjct: 438 AIESSFGAAMSQMSSFLSQGYPPEATLVKVEENMKGTPVAEFFDVTINNIRKLGMSLKDA 497

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN-------LSRILRDRKNMKAKVQALS 123
                           +++       + ++++ N       +S+ L + + ++ +V+++ 
Sbjct: 498 FFNPTNGSTRFFPSPLILASTKIFLSSAAKSVRNASVATSYVSKHLANLRKIEEQVRSML 557

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
            E  +   +   L       +       +  ++    G +
Sbjct: 558 EEVTSGMRVEVGLISPAMAGIVVGLTTLIGTVLTSLSGSI 597


>gi|197285900|ref|YP_002151772.1| protein transport protein [Proteus mirabilis HI4320]
 gi|194683387|emb|CAR44111.1| protein transport protein [Proteus mirabilis HI4320]
          Length = 399

 Score = 35.5 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 40/134 (29%), Gaps = 5/134 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                   I+  + +AGLP+   + +I  Q      S ++R +      ++  +S+S  +
Sbjct: 263 HQLHIIFQIMTITQQAGLPLLQGLKIITEQL---THSLYQRALTDMIAHITQGKSLSSFM 319

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R             +   ++  G L      L+     +   +       +E      I 
Sbjct: 320 R--HNPLFPPICYQLISSAENSGQLQFFCQQLTHWFYHQLEERLDSVKTWLEPILMTLIA 377

Query: 134 GSLPFCVSTLVYFT 147
                 +  +    
Sbjct: 378 LITGTLIIAMYLPV 391


>gi|253998558|ref|YP_003050621.1| type II secretion system protein [Methylovorus sp. SIP3-4]
 gi|253985237|gb|ACT50094.1| type II secretion system protein [Methylovorus sp. SIP3-4]
          Length = 395

 Score = 35.5 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/98 (11%), Positives = 29/98 (29%), Gaps = 6/98 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                   +   +R G+P+  A+ ++       +R+    V      G  LS ++     
Sbjct: 261 QLARFYRTLGMLLRGGIPLVTAMQMVSSLLQPALRNSLALVERDIREGKPLSSAMEEHGM 320

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112
                     +  +    +  G + E +  +     + 
Sbjct: 321 TT------SIAIRMLRVGERTGRMGEMMERIGVFYDEE 352


>gi|313200632|ref|YP_004039290.1| type II secretion system protein [Methylovorus sp. MP688]
 gi|312439948|gb|ADQ84054.1| type II secretion system protein [Methylovorus sp. MP688]
          Length = 395

 Score = 35.5 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/98 (11%), Positives = 29/98 (29%), Gaps = 6/98 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                   +   +R G+P+  A+ ++       +R+    V      G  LS ++     
Sbjct: 261 QLARFYRTLGMLLRGGIPLVTAMQMVSSLLQPALRNSLALVERDIREGKPLSSAMEEHGM 320

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112
                     +  +    +  G + E +  +     + 
Sbjct: 321 TT------SIAIRMLRVGERTGRMGEMMERIGVFYDEE 352


>gi|310827090|ref|YP_003959447.1| hypothetical protein ELI_1498 [Eubacterium limosum KIST612]
 gi|308738824|gb|ADO36484.1| hypothetical protein ELI_1498 [Eubacterium limosum KIST612]
          Length = 1426

 Score = 35.5 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/154 (9%), Positives = 45/154 (29%), Gaps = 27/154 (17%)

Query: 4   LIKKRTAKFLDDFPNALDII------VRSVR----------------AGLPVSDAVAVIV 41
             +K   +  + F   +  +      +R +                 +G+P+ +   +  
Sbjct: 493 RAQKEKERIEEYFQTVVRNLPGGVAVIRCLEDGRMMPEYISDGFAELSGMPLDEVWRICE 552

Query: 42  GQS-----SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG 96
             +      +       R+ E      +  E   R+ +          +  +   S    
Sbjct: 553 KDAMAGVHPEDRARVNERMAEYIRNDENYCEMAYRLRKGDGSSLWVKNTLSLIQGSGGEK 612

Query: 97  NLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            +     +++R   ++++M+ K   L ++     
Sbjct: 613 RIYAGYHDITREREEQEHMRKKYNDLILQHYRRP 646


>gi|153930642|ref|YP_001393316.1| type II secretion system protein F [Yersinia pseudotuberculosis IP
           31758]
 gi|152958183|gb|ABS45645.1| bacterial type II secretion system protein F domain [Yersinia
           pseudotuberculosis IP 31758]
          Length = 359

 Score = 35.5 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 44/137 (32%), Gaps = 6/137 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L  I   + AG+ + +A+ +I   SS  +       +     G+ L +++   +     
Sbjct: 228 FLLNISVMMSAGIQMQEALRIISNGSSPWLMQRVNSAL----FGIGLGKNLGEALEISGY 283

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                 +          GNL E L + +      +     +  ++    +   I+  L  
Sbjct: 284 DFPDRKAIPFISILADTGNLDEVLPDYAN--EWLEESVRNIDTIANWMLSIGLILIGLVI 341

Query: 139 CVSTLVYFTSPGYMNVL 155
            +  +       YM  +
Sbjct: 342 ALIMIGTNEISNYMQTM 358


>gi|218290609|ref|ZP_03494711.1| hypothetical protein AaLAA1DRAFT_2297 [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239393|gb|EED06590.1| hypothetical protein AaLAA1DRAFT_2297 [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 294

 Score = 35.5 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/166 (9%), Positives = 44/166 (26%), Gaps = 2/166 (1%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL- 61
             I+ R               V  +R  +P+ +A+  I   ++       RR +      
Sbjct: 129 RRIQTRRRDAAWQVRQLKRRFVSLLRRRIPLEEALWQIARDAAAQRTDFGRRFVARMQEV 188

Query: 62  -GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
              +L +++  +     + E++ F   I             +          +  +    
Sbjct: 189 RVRALGDALHDLAEEFRVPELTRFVQAIRHAEANSLGSLADILETQIRDESAQLDELVEA 248

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
             +        +   +   +     + +       I   +G + L 
Sbjct: 249 EKNAMQLKLRMMSVVMFVYILGWAGYFAFAVFRHQIQTGQGILGLF 294


>gi|319645034|ref|ZP_07999267.1| ComGB protein [Bacillus sp. BT1B_CT2]
 gi|317392843|gb|EFV73637.1| ComGB protein [Bacillus sp. BT1B_CT2]
          Length = 340

 Score = 35.5 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/163 (8%), Positives = 50/163 (30%), Gaps = 20/163 (12%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            +  + L  +   +++G  + DA++++             ++   +     L+ ++ ++ 
Sbjct: 6   REQADLLKKLGDMMQSGYTILDALSML-------------KLQLNERRRADLTFAMEKLT 52

Query: 74  RYMP------LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
              P      +      +  I   ++  GNL  A      +L  +     K++  +    
Sbjct: 53  EGCPVFQVLEMISFHKDAVTIVYFAEQHGNLPFAFRQSGELLHRKIAQSEKLKKAARYPL 112

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVL-INDPRGHMLLGVAA 169
                +  +   + + +          + +       L+    
Sbjct: 113 FLVLTVCVIISIMKSAIVPQFSAIYESMNVETSFATTLIFYVF 155


>gi|146305723|ref|YP_001186188.1| type II secretion system protein [Pseudomonas mendocina ymp]
 gi|145573924|gb|ABP83456.1| type II secretion system protein [Pseudomonas mendocina ymp]
          Length = 333

 Score = 35.5 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 43/151 (28%), Gaps = 11/151 (7%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAV-AVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
             D  N  D +   + AG+PV DA+      Q +  +R +F  +      G SL+ +   
Sbjct: 193 RADLSNFCDSLGLLLEAGMPVLDALPRACAAQGNARLRRDFANLAPRVAAGQSLARAFDA 252

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +               +    +  G   EAL   +R+   +             A     
Sbjct: 253 LA-----FPGKPMLMAVLNTGEATGRPGEALLRFARLQAQQLAA-----RQQALATWLPR 302

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162
           +              T  G+   L     G 
Sbjct: 303 LFYLAVAGWMAYGLLTGGGFFPALPAGLAGR 333


>gi|307109775|gb|EFN58012.1| hypothetical protein CHLNCDRAFT_57086 [Chlorella variabilis]
          Length = 2107

 Score = 35.5 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 6/89 (6%), Positives = 20/89 (22%), Gaps = 2/89 (2%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL--GLSLSESISRMVRY 75
           + L  ++    +GL +  A+  +  +                 +     +  +       
Sbjct: 201 DLLAQLILDYESGLSIEAAIQRVRTRMEAWRVQVLLDFYGMSRIGGQHRVLPADVEAAAE 260

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALAN 104
                    +T +     +       L  
Sbjct: 261 HDWPLPFLSATYVRTMLDVHMEERRQLKR 289


>gi|224283519|ref|ZP_03646841.1| Flp pilus assembly protein [Bifidobacterium bifidum NCIMB 41171]
          Length = 182

 Score = 35.5 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 45/139 (32%), Gaps = 1/139 (0%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P  + ++  S+R+G+ V+ ++  +       +      V +  H G S  ++ +     
Sbjct: 44  LPLLIGLLSVSLRSGMSVTRSLEGVGEAVGGALGGGLCAVADALHRGSSWKDAWNAADFG 103

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIG 134
              +  +    V+      G +    L   S + +   +    +  A           + 
Sbjct: 104 DYAETSAILRGVLEPSWTRGVSPIGPLTTASEQWMEGERTAIEQESASLSVKLLLPTGLC 163

Query: 135 SLPFCVSTLVYFTSPGYMN 153
            LP  V   +  +   ++ 
Sbjct: 164 MLPAFVFLGILPSVMAFVG 182


>gi|258509445|ref|YP_003172196.1| ABC transporter permease [Lactobacillus rhamnosus GG]
 gi|257149372|emb|CAR88345.1| ABC transporter, permease protein [Lactobacillus rhamnosus GG]
 gi|259650725|dbj|BAI42887.1| antimicrobial peptide ABC transporter permease component
           [Lactobacillus rhamnosus GG]
          Length = 352

 Score = 35.5 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 3/75 (4%)

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             +A + AL  +    A    ++   +  L  F  P  M     +P   + +  A   M 
Sbjct: 271 RTRAIIAALFWQILMLAVTGVAIGAGLLGLTQFILPKAM-PFYANPPLFIAIAAALILMS 329

Query: 174 I--GIMVMRLMINFD 186
           +  G+  +R +++ D
Sbjct: 330 LVGGLFSLRRILHID 344


>gi|268591741|ref|ZP_06125962.1| putative protein transport protein HofC [Providencia rettgeri DSM
           1131]
 gi|291312702|gb|EFE53155.1| putative protein transport protein HofC [Providencia rettgeri DSM
           1131]
          Length = 395

 Score = 35.1 bits (79), Expect = 4.1,   Method: Composition-based stats.
 Identities = 13/156 (8%), Positives = 42/156 (26%), Gaps = 9/156 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +     +G+ +   + ++                I     G   S+ + +      
Sbjct: 61  FFHQLSLLSSSGINLVQCLKILHTNCQLPFWIDIIENSIVHIEKGEKFSQYLKKHP---- 116

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               +     I   ++  G   ++ + ++ IL     +   +            +     
Sbjct: 117 -TIFNDTIISIITIAEKTGQYEQSFSTINSILDHNNKVSLLISKSIRYPI---ILSSFSI 172

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             +  ++ +  P + N+  N      L+     F+ 
Sbjct: 173 MLLIIMMVYVVPQFENIYQNTKHELPLVTKIITFIS 208


>gi|47095929|ref|ZP_00233532.1| comG operon protein 2 [Listeria monocytogenes str. 1/2a F6854]
 gi|224499926|ref|ZP_03668275.1| hypothetical protein LmonF1_09694 [Listeria monocytogenes Finland
           1988]
 gi|254827607|ref|ZP_05232294.1| comG operon protein 2 [Listeria monocytogenes FSL N3-165]
 gi|254829897|ref|ZP_05234552.1| hypothetical protein Lmon1_01010 [Listeria monocytogenes 10403S]
 gi|254898489|ref|ZP_05258413.1| hypothetical protein LmonJ_01700 [Listeria monocytogenes J0161]
 gi|254912020|ref|ZP_05262032.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254936347|ref|ZP_05268044.1| comG operon protein 2 [Listeria monocytogenes F6900]
 gi|47015675|gb|EAL06605.1| comG operon protein 2 [Listeria monocytogenes str. 1/2a F6854]
 gi|258599984|gb|EEW13309.1| comG operon protein 2 [Listeria monocytogenes FSL N3-165]
 gi|258608937|gb|EEW21545.1| comG operon protein 2 [Listeria monocytogenes F6900]
 gi|293589985|gb|EFF98319.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 343

 Score = 35.1 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/128 (11%), Positives = 42/128 (32%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +   +++GL ++  + +   + S     E  R      +  +L + +S       +  
Sbjct: 215 RELGYLLKSGLSITHIMHLFAQEESPAFFQEIAR-----QILPTLEQGLSLTKALEKMPI 269

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
                  I++  +  GNL+E       +   +   K +     ++      I   +    
Sbjct: 270 FEKELYYIAIHGEKNGNLAEEFLFYYNLCHQKSLQKTEKLFSFIQPIVFIVIGILIVSIY 329

Query: 141 STLVYFTS 148
            +++Y   
Sbjct: 330 LSILYPMF 337


>gi|256810974|ref|YP_003128343.1| Type II secretion system F domain protein [Methanocaldococcus
           fervens AG86]
 gi|256794174|gb|ACV24843.1| Type II secretion system F domain protein [Methanocaldococcus
           fervens AG86]
          Length = 344

 Score = 35.1 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 57/178 (32%), Gaps = 5/178 (2%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGL-SLS 66
             +        L  +V  +RAG  + + +  I   +    +  E R +I   ++   +L 
Sbjct: 167 KEEVKLQVLFTLLYMVSILRAGASLPEILETISKSNEYGFISFEARSIIRDVNVSGYTLV 226

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME- 125
           E++ R      +  +      + +     GNLS  L  L   +      K       ++ 
Sbjct: 227 EALERAKLRTEIPLLKKLYDQMII-GYNKGNLSMLLEKLYEDIVRDSLSKLDSSKFMIQN 285

Query: 126 -AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
               +  +   LPF    L    S      ++N     +        ++ GI V   +
Sbjct: 286 LGNLTFGVGLILPFAGMILSTMISNQGFPGILNTLDLLLTKIGPLLTLIFGIFVKLKI 343


>gi|327399287|ref|YP_004340156.1| Type II secretion system F domain-containing protein [Hippea
           maritima DSM 10411]
 gi|327181916|gb|AEA34097.1| Type II secretion system F domain protein [Hippea maritima DSM
           10411]
          Length = 405

 Score = 35.1 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/132 (9%), Positives = 42/132 (31%), Gaps = 5/132 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
               + I+    ++GL ++ ++ ++   + + V  +    I +     +      +   +
Sbjct: 271 LSRIMRILGLLYKSGLAITTSLDIVAEATGNDVAKQAILAIRSYVESGATISRPIKSSEF 330

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P        + +    +  G L E L  +S    +  +      + ++E     +I   
Sbjct: 331 FP-----DIVSDMVAVGEETGRLDEMLFKVSDYFDEEISYAINNLSTAIEPILLVFIAAM 385

Query: 136 LPFCVSTLVYFT 147
           +      +    
Sbjct: 386 VLLLALGVFLPM 397


>gi|160940639|ref|ZP_02087982.1| hypothetical protein CLOBOL_05533 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436374|gb|EDP14141.1| hypothetical protein CLOBOL_05533 [Clostridium bolteae ATCC
           BAA-613]
          Length = 292

 Score = 35.1 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 45/151 (29%), Gaps = 2/151 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +KKR      + P     I +S+     V   +      +   +  E    I       +
Sbjct: 140 VKKRKVLIEQELPRLAVSIQQSLANDRDVLKLLVSYRRIAGPELGKELDTTIADMK-TGN 198

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
              ++ R    +    +S     +   +  G +       L+  +R  +    K +A   
Sbjct: 199 YENALLRFQNRIGSTMLSDIVRGLI-GTLRGDDQQMYFRMLAFDMRQMEQSNLKKEAAKR 257

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
             +   + +  L   +   V   +   ++ L
Sbjct: 258 PKQMQKYSMMMLFCILLIYVVVLTVEVISSL 288


>gi|157283961|ref|YP_001468229.1| type II secretion system protein [Kineococcus radiotolerans
           SRS30216]
 gi|151363103|gb|ABS06105.1| type II secretion system protein [Kineococcus radiotolerans
           SRS30216]
          Length = 305

 Score = 35.1 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 53/152 (34%), Gaps = 1/152 (0%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL- 63
            + R A F     + +D++     +G   S+A+A           +  R  +    +   
Sbjct: 154 AESRRADFRAAITSYMDLVAMRAASGAGASEALADAARIGRGWPFARVRLALADARISGY 213

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           + + ++ R+   + + E+   S  + +    G      L   +R LRD +   A+ +A  
Sbjct: 214 TPARALGRLGEEIGMHELQDLSAQLLLADATGAQAEVTLRERARSLRDAQLAVAQGKAGE 273

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                    +      +  ++Y     +M  L
Sbjct: 274 RSQTMVIAQLLLALGFMLFVLYPPVSNFMTAL 305


>gi|242215781|ref|XP_002473703.1| predicted protein [Postia placenta Mad-698-R]
 gi|220727188|gb|EED81115.1| predicted protein [Postia placenta Mad-698-R]
          Length = 412

 Score = 35.1 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 24/204 (11%), Positives = 60/204 (29%), Gaps = 27/204 (13%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGL--PVSDAVAV--------------IVGQSS 45
           + ++++   +          ++V ++ AGL   V  A  V              ++ Q S
Sbjct: 143 RDMVRRWKDEIDSQL-----LMVGTLTAGLFSTVITAFNVEYYRTLKPSADISDVIQQLS 197

Query: 46  DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG--GNLSEALA 103
           + + +      E      S+ ++ +     +     S     ++  S             
Sbjct: 198 EQMSNFTSNSTEASTAAQSIQKAPTLSATCINAFWFSSLVLTLATGSIGILVKQWLNNYT 257

Query: 104 NLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-- 161
           +    L ++  +    ++  +       II  LP  +   +     G + +L        
Sbjct: 258 DHIPALPNKSVLTWHERSTGLAKWRVGRIIAILPVLLQIAIALFLVGLVQLLWTLSAAVF 317

Query: 162 --HMLLGVAAAFMLIGIMVMRLMI 183
                L  A     I   V+  ++
Sbjct: 318 GIVFALVAALLLFSISSAVIPSIM 341


>gi|330501687|ref|YP_004378556.1| type II secretion system protein [Pseudomonas mendocina NK-01]
 gi|328915973|gb|AEB56804.1| type II secretion system protein [Pseudomonas mendocina NK-01]
          Length = 333

 Score = 35.1 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 42/152 (27%), Gaps = 13/152 (8%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             D  N  D +   + AG+PV DA+       S+       R+            +   +
Sbjct: 193 RADIRNFCDSLGLLLEAGMPVLDALPRASSAVSN------ARLRRDFANLAPRVAAGQSL 246

Query: 73  VRYMPLQEVS--FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           VR               +    +  G   EAL   +R+   +     ++      A  + 
Sbjct: 247 VRAFDGLSFPGKAMLIGVLNTGEASGRPGEALLRFARLQAQQLATNQQML-----ASWAP 301

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162
            +              T  G+   L  +  G 
Sbjct: 302 RLFYLAVAIWMAYGLLTGGGFFPALPAELAGR 333


>gi|237756012|ref|ZP_04584595.1| single-stranded-DNA-specific exonuclease RecJ [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691828|gb|EEP60853.1| single-stranded-DNA-specific exonuclease RecJ [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 574

 Score = 35.1 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
                P  +S  +   +P + +  + +P    L  V  AF LI   ++R ++N D+
Sbjct: 176 WQNYTPPFLSEKINIINPKFYSDKLINPLFKHLATVGIAFYLIA--IIRRLLNIDI 229


>gi|284801731|ref|YP_003413596.1| hypothetical protein LM5578_1485 [Listeria monocytogenes 08-5578]
 gi|284994873|ref|YP_003416641.1| hypothetical protein LM5923_1438 [Listeria monocytogenes 08-5923]
 gi|284057293|gb|ADB68234.1| hypothetical protein LM5578_1485 [Listeria monocytogenes 08-5578]
 gi|284060340|gb|ADB71279.1| hypothetical protein LM5923_1438 [Listeria monocytogenes 08-5923]
          Length = 343

 Score = 35.1 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/128 (11%), Positives = 42/128 (32%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +   +++GL ++  + +   + S     E  R      +  +L + +S       +  
Sbjct: 215 RELGYLLKSGLSITHIMHLFAQEESPAFFQEIAR-----QILPTLEQGLSLTKALEKMPI 269

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
                  I++  +  GNL+E       +   +   K +     ++      I   +    
Sbjct: 270 FEKELYYIAIHGEKNGNLAEEFLFYYNLCHQKSLQKTEKLFSFIQPIVFIVIGILIVSIY 329

Query: 141 STLVYFTS 148
            +++Y   
Sbjct: 330 LSILYPMF 337


>gi|16803386|ref|NP_464871.1| hypothetical protein lmo1346 [Listeria monocytogenes EGD-e]
 gi|224501711|ref|ZP_03670018.1| hypothetical protein LmonFR_04212 [Listeria monocytogenes FSL
           R2-561]
 gi|16410762|emb|CAC99424.1| comGB [Listeria monocytogenes EGD-e]
          Length = 343

 Score = 35.1 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/128 (11%), Positives = 42/128 (32%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +   +++GL ++  + +   + S     E  R      +  +L + +S       +  
Sbjct: 215 RELGYLLKSGLSITHIMHLFAQEESPAFFQEIAR-----QILPTLEQGLSLTKALEKMPI 269

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
                  I++  +  GNL+E       +   +   K +     ++      I   +    
Sbjct: 270 FEKELYYIAIHGEKNGNLAEEFLFYYNLCHQKSLQKTEKLFSFIQPIVFIVIGILIVSIY 329

Query: 141 STLVYFTS 148
            +++Y   
Sbjct: 330 LSILYPMF 337


>gi|188582052|ref|YP_001925497.1| glycosyl transferase group 1 [Methylobacterium populi BJ001]
 gi|179345550|gb|ACB80962.1| glycosyl transferase group 1 [Methylobacterium populi BJ001]
          Length = 412

 Score = 35.1 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 11/103 (10%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            + +R         + LD + R   AG+P   A++ I          E  R    +    
Sbjct: 214 RVDRRKGVL-----DFLDALERLWEAGVPFDAAISGIGPDV------EAARARADEIGFT 262

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLS 106
           S     +    Y  + ++   + V    +   G  +  L  ++
Sbjct: 263 SAQVRFTGYADYDTVPDLYREADVFVSPTYAEGFSNTILEAMA 305


>gi|330969402|gb|EGH69468.1| type II secretion system protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 220

 Score = 35.1 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 6/56 (10%), Positives = 23/56 (41%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI 56
           +  + ++R  + + +    + ++     +G+ V  A+ V+  +  D +      + 
Sbjct: 134 LATVARRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIR 189


>gi|52081008|ref|YP_079799.1| DNA transport protein ComGB [Bacillus licheniformis ATCC 14580]
 gi|52786385|ref|YP_092214.1| ComGB [Bacillus licheniformis ATCC 14580]
 gi|52004219|gb|AAU24161.1| probably part of the DNA transport machinery ComGB [Bacillus
           licheniformis ATCC 14580]
 gi|52348887|gb|AAU41521.1| ComGB [Bacillus licheniformis ATCC 14580]
          Length = 344

 Score = 35.1 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/163 (8%), Positives = 50/163 (30%), Gaps = 20/163 (12%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            +  + L  +   +++G  + DA++++             ++   +     L+ ++ ++ 
Sbjct: 10  REQADLLKKLGDMMQSGYTILDALSML-------------KLQLNERRRADLTFAMEKLT 56

Query: 74  RYMP------LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
              P      +      +  I   ++  GNL  A      +L  +     K++  +    
Sbjct: 57  EGCPVFQVLEMISFHKDAVTIVYFAEQHGNLPFAFRQSGELLHRKIAQSEKLKKAARYPL 116

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVL-INDPRGHMLLGVAA 169
                +  +   + + +          + +       L+    
Sbjct: 117 FLVLTVCVIISIMKSAIVPQFSAIYESMNVETSFATTLIFYVF 159


>gi|81051975|gb|ABB55329.1| hypothetical protein 12.t00047 [Asparagus officinalis]
          Length = 304

 Score = 35.1 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/142 (9%), Positives = 40/142 (28%), Gaps = 22/142 (15%)

Query: 1   MKHLIKKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           +    ++R  +     F  ALD +                               + + Q
Sbjct: 127 LSKRARQRQRQHLARQFAKALDQM---------------------DGLHYQADLELRKRQ 165

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
              LS   +     R    + V    T  +++ +     + +    +++   R+ ++ +V
Sbjct: 166 VANLSPRPASESSSRSPINEWVRVQRTRSTLEERTQKRRALSAQARAQVQEARRRLQKEV 225

Query: 120 QALSMEAKASAWIIGSLPFCVS 141
                    ++    +L   + 
Sbjct: 226 AKKPPPTHQNSPFQSNLSILII 247


>gi|301066049|ref|YP_003788072.1| type II secretory pathway/competence component [Lactobacillus casei
           str. Zhang]
 gi|300438456|gb|ADK18222.1| Type II secretory pathway/competence component [Lactobacillus casei
           str. Zhang]
          Length = 317

 Score = 35.1 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 52/161 (32%), Gaps = 12/161 (7%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
                   + AG  + D  A +   S    R  + R+      G+ L E++         
Sbjct: 11  FCRQSAALIAAGFSLPDVFAYL-RVSLPKYRPIWERIETDLASGIGLPEAVDHQALAP-- 67

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                        +Q+ G+L++ALA     L  R   + ++  L +       ++ +L  
Sbjct: 68  -----ILFQQLQLAQVHGDLAKALAVAGDYLGLRVRNRQRIGQLLIYPLVLLGMLVTLQV 122

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            V   V        + L++      L+ +        ++ +
Sbjct: 123 VVVFGVLPALALPQSHLVHT----QLMTMGGGLAAGLLIWL 159


>gi|87119647|ref|ZP_01075544.1| hypothetical protein MED121_06900 [Marinomonas sp. MED121]
 gi|86165123|gb|EAQ66391.1| hypothetical protein MED121_06900 [Marinomonas sp. MED121]
          Length = 312

 Score = 35.1 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 2/97 (2%)

Query: 16  FPNALDIIVRS--VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
             +A D +  S   RAG+P   A+++I           F   +        L+  I    
Sbjct: 164 LCDAFDAMTSSRPYRAGMPQEKALSIIANNKGTQFDCVFADALIALGEEGKLAHIIGHSD 223

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
             +PLQ        I VQS+            +    
Sbjct: 224 EGIPLQSCPTCGPTIVVQSEHKAGDHLHCPKCAGSFE 260


>gi|229819119|ref|YP_002880645.1| type II secretion system protein [Beutenbergia cavernae DSM 12333]
 gi|229565032|gb|ACQ78883.1| type II secretion system protein [Beutenbergia cavernae DSM 12333]
          Length = 179

 Score = 35.1 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 43/141 (30%), Gaps = 6/141 (4%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
                 D   A +++   + AG  V  A+  +            R       LG S SE+
Sbjct: 34  RRAVRVDAAVACELVAAVLDAGAAVPTALDALGRAIDGDDGRALRSCGGALLLGASWSEA 93

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
            S +     + E       +      G     AL   +  +R R+   AK  A  +  + 
Sbjct: 94  WSGVPGRWAIVER-----ALEPAWTDGVAPGPALRAAADGVRARRAELAKEAAARLGVRL 148

Query: 129 SAWI-IGSLPFCVSTLVYFTS 148
              + +  LP  V   +    
Sbjct: 149 VLPLGLCYLPAFVLLGLLPVV 169


>gi|229552743|ref|ZP_04441468.1| ABC superfamily ATP binding cassette transporter, membrane protein
           [Lactobacillus rhamnosus LMS2-1]
 gi|229313848|gb|EEN79821.1| ABC superfamily ATP binding cassette transporter, membrane protein
           [Lactobacillus rhamnosus LMS2-1]
          Length = 357

 Score = 35.1 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 3/75 (4%)

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             +A + AL  +    A    ++   +  L  F  P  M     +P   + +  A   M 
Sbjct: 276 RTRAIIAALFWQILMLAVTGVAIGAGLLGLTQFILPKAM-PFYANPPLFIAIAAALILMS 334

Query: 174 I--GIMVMRLMINFD 186
           +  G+  +R +++ D
Sbjct: 335 LVGGLFSLRRILHID 349


>gi|210621720|ref|ZP_03292769.1| hypothetical protein CLOHIR_00714 [Clostridium hiranonis DSM 13275]
 gi|210154602|gb|EEA85608.1| hypothetical protein CLOHIR_00714 [Clostridium hiranonis DSM 13275]
          Length = 374

 Score = 35.1 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 8/136 (5%), Positives = 38/136 (27%), Gaps = 5/136 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   +++G+P+ +A+ +    + +        +        +       +    P 
Sbjct: 244 FSRNMYIMLKSGIPLVEAIDIASDITGNVYIQRKLEISIRYINKGNSISKSIELSSIFP- 302

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +  GN+  +   ++    +  ++        +E   +  +   +  
Sbjct: 303 ----DMFVSMIKNGEESGNIERSFQYINDFFENELDIMTDRIVRLVEPIITIIMGIVIGA 358

Query: 139 CVSTLVYFTSPGYMNV 154
            +  +V         +
Sbjct: 359 LIIAIVMPMFDAITAI 374


>gi|74317312|ref|YP_315052.1| type II secretion system protein F [Thiobacillus denitrificans ATCC
           25259]
 gi|74056807|gb|AAZ97247.1| type II secretion system protein F [Thiobacillus denitrificans ATCC
           25259]
          Length = 389

 Score = 35.1 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 13/134 (9%), Positives = 33/134 (24%), Gaps = 6/134 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                   +   +  G+ +  A+ +  G     +R    R       G  +S ++     
Sbjct: 255 QLARFYRTLGMLLAGGVSIVPALDMASGILHASLRDGLARAGARIREGQPISFAMEANGL 314

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                     +  +    +  G + E +  ++    +             E    A I  
Sbjct: 315 TTQ------VALRMLRVGERTGQMGEMMERIAAFYDEEMARWVDWFTKLFEPLLMAVIGV 368

Query: 135 SLPFCVSTLVYFTS 148
            +   V  +     
Sbjct: 369 VIGALVVLMYMPIF 382


>gi|301055733|ref|YP_003793944.1| ComG operon protein 2 [Bacillus anthracis CI]
 gi|300377902|gb|ADK06806.1| comG operon protein 2 [Bacillus cereus biovar anthracis str. CI]
          Length = 345

 Score = 35.1 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 7/132 (5%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
                +   +  GL V +A+ +++ Q      + E  R+      G  L   I++     
Sbjct: 214 YFATQLSGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIAGEPLQSIIAKSG--- 270

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
                    + I    Q  GNL+  L + S ++ ++   K K   + ++      I G +
Sbjct: 271 ---YYEEELSYIITHGQANGNLAIELGDYSDLIMEKMERKIKRMLVIIQPILFTCIGGIV 327

Query: 137 PFCVSTLVYFTS 148
                 ++    
Sbjct: 328 VLMYLAMIMPMF 339


>gi|302063752|ref|ZP_07255293.1| general secretion pathway protein F [Pseudomonas syringae pv.
           tomato K40]
          Length = 123

 Score = 35.1 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISR 71
               +    +   + AG P+  ++ +++ Q      R+   R+ E    G  LS ++  
Sbjct: 62  AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGKPLSVALEE 120


>gi|199598870|ref|ZP_03212281.1| ABC-type antimicrobial peptide transport system, permease component
           [Lactobacillus rhamnosus HN001]
 gi|199590282|gb|EDY98377.1| ABC-type antimicrobial peptide transport system, permease component
           [Lactobacillus rhamnosus HN001]
          Length = 352

 Score = 35.1 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 3/75 (4%)

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             +A + AL  +    A    ++   +  L  F  P  M     +P   + +  A   M 
Sbjct: 271 RTRAIIAALFWQILMLAVTGVAIGAGLLGLTQFILPKAM-PFYANPPLFIAIAAALISMS 329

Query: 174 I--GIMVMRLMINFD 186
           +  G+  +R +++ D
Sbjct: 330 LVGGLFSLRRILHID 344


>gi|70608026|ref|YP_256896.1| hypothetical protein Saci_2318 [Sulfolobus acidocaldarius DSM 639]
 gi|68568674|gb|AAY81603.1| conserved Archaeal membrane protein [Sulfolobus acidocaldarius DSM
           639]
          Length = 611

 Score = 35.1 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 57/177 (32%), Gaps = 5/177 (2%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65
           +  + F +     L+ I   + AGL     V  +         R   R+V     LG  L
Sbjct: 380 REKSGFEEYAVKFLNAISEGLLAGLTFESIVTRLKDAQEMGKFREVLRKVDGYLKLGYPL 439

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD----RKNMKAKVQA 121
           + ++ R    +           +S   ++G    + +  L+  +      R+  + KV+ 
Sbjct: 440 TIALKRGADSINEFTSRIALYTLSDMIEIGSMTPDNVRALADQINSQLVVRREYQGKVKP 499

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           L     A   +     F +++ +       + V      G + +        I  ++
Sbjct: 500 LIATPYAGVLVSLIATFLLASGILSMLNSGIAVYGPIATGLVSIPQIIFITAISGIL 556


>gi|68535787|ref|YP_250492.1| hypothetical protein jk0712 [Corynebacterium jeikeium K411]
 gi|260578125|ref|ZP_05846046.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
 gi|68263386|emb|CAI36874.1| hypothetical protein jk0712 [Corynebacterium jeikeium K411]
 gi|258603764|gb|EEW17020.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
          Length = 242

 Score = 35.1 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 6/67 (8%), Positives = 23/67 (34%)

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           + + +     +  +++         ++     G  N  I +    +++ V    +  G+ 
Sbjct: 133 EKRFVRDWIDSRRYMMNFFLPLALLVIVIMIFGMSNPSIANLASLVMMIVFLIMIAEGLW 192

Query: 178 VMRLMIN 184
           + R +  
Sbjct: 193 LGRRINR 199


>gi|325969263|ref|YP_004245455.1| type II secretion system F domain-containing protein [Vulcanisaeta
           moutnovskia 768-28]
 gi|323708466|gb|ADY01953.1| type II secretion system F domain-containing protein [Vulcanisaeta
           moutnovskia 768-28]
          Length = 514

 Score = 34.7 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 16/159 (10%), Positives = 47/159 (29%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
              + P  + ++      G  ++ A  +        +  E+  +        S++ ++  
Sbjct: 85  VEWELPFFVVLLDIIHDIGGNITHAFEISNKVGLKWIGREWSLIKVFSLTTNSVTNAMQL 144

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             R+ P  E   F           G+++  + ++        + K    +  +     A 
Sbjct: 145 RARFHPSIEFQRFINGYVSVWGYSGDVNTYVRSVENTYLSILSNKLSALSKQIIDVVIAI 204

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           +   +   +  ++         +L   P   +LL     
Sbjct: 205 VSSLIVLILFVIIATILGMNYAILYIMPAMALLLPALIV 243


>gi|117925819|ref|YP_866436.1| Mg2+ transporter protein, CorA family protein [Magnetococcus sp.
           MC-1]
 gi|117609575|gb|ABK45030.1| Mg2+ transporter protein, CorA family protein [Magnetococcus sp.
           MC-1]
          Length = 326

 Score = 34.7 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 42/143 (29%), Gaps = 3/143 (2%)

Query: 42  GQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEA 101
               + +    R+VI  +        +++ + +  P       +  I             
Sbjct: 180 ESLREELLMLRRKVINLRRYLAPQKIALALLSKSPPSWLNKGRTRQIREVEHELQRYLGD 239

Query: 102 LANL---SRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158
           L +    + ++R+  N +  V+        S      LP    T +   + G M    N 
Sbjct: 240 LESYRERAVVIREEINNQMNVRMNRAMYMLSLITGIFLPLGFLTGLLGINVGGMPGADNP 299

Query: 159 PRGHMLLGVAAAFMLIGIMVMRL 181
               ++  +  A   I + V   
Sbjct: 300 WAFWLVCLLMIAVTAINLFVFYR 322


>gi|228987491|ref|ZP_04147610.1| ComG operon protein 2 [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228772223|gb|EEM20670.1| ComG operon protein 2 [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 315

 Score = 34.7 bits (78), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 45/132 (34%), Gaps = 7/132 (5%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
                +   +  GL V +A+ +++ Q      + E RR+      G  L   I++     
Sbjct: 184 YFATQLSGLLHGGLSVLEALTIMMEQKYHPFFQYEARRIEHQLIAGEPLQSIIAKSG--- 240

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
                    + +    Q  GNL+  L + S ++ ++   K     + ++      I G +
Sbjct: 241 ---YYEEELSYVITHGQANGNLAIELGDYSDLIMEKMEQKINRMLVIIQPILFTCIGGIV 297

Query: 137 PFCVSTLVYFTS 148
                 ++    
Sbjct: 298 VLMYLAMIMPMF 309


>gi|296160524|ref|ZP_06843340.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
 gi|295889273|gb|EFG69075.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
          Length = 409

 Score = 34.7 bits (78), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 45/152 (29%), Gaps = 2/152 (1%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   +RAGLP++ A+ ++    +   +   R V                       
Sbjct: 73  FTRQLASLLRAGLPLAPALDLLAQAQASRRQGMPRIVGALARDITG--GLRFSAALQRHP 130

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
            + +     +    +  G L+  LA ++         +AKV+A      A   +  ++  
Sbjct: 131 AQFNALYCQLVEVGEAAGALAAVLARIAEDRERAAAQRAKVRAALTYPVAILVLALAITA 190

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
            +   V  T     +             +A +
Sbjct: 191 ALLVWVVPTFQQIFDGFGARLPAPTQFVLALS 222


>gi|330718415|ref|ZP_08313015.1| Type II secretory pathway/competence component [Leuconostoc fallax
           KCTC 3537]
          Length = 244

 Score = 34.7 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/155 (8%), Positives = 51/155 (32%), Gaps = 9/155 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   +++G  ++ ++ ++     +                ++L     + +  +  
Sbjct: 19  FFQELGELLKSGYSINQSLDILALAHQNWQTRLQE---------MNLKLVNGQTLPDVLA 69

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           + V     +    +   G+L + L  +   L   +  + K++ +         I+G++  
Sbjct: 70  KVVKSNILLQLRLAHQHGDLIDTLIVMGDNLEQFQVQQNKIRQILRYPAILLLILGAMAA 129

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
            +   +Y     +     +    H+ + +    M+
Sbjct: 130 GLRLFLYPLLAQWQTTPTSHVDNHIRVSIYIILMV 164


>gi|300361338|ref|ZP_07057515.1| competence protein [Lactobacillus gasseri JV-V03]
 gi|300353957|gb|EFJ69828.1| competence protein [Lactobacillus gasseri JV-V03]
          Length = 326

 Score = 34.7 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 60/165 (36%), Gaps = 14/165 (8%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            +D + +++  G  ++ ++ ++    S           + +           ++   +  
Sbjct: 14  FIDYLKQALINGYSLNASLKLLPKIWSGNSSQLVYISKQVEEG--------RQLGDVLHE 65

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
              S   +     + + GNL   L  LS+++R +     K++           ++ +L  
Sbjct: 66  VGFSSTLSAQINMAIIDGNLLSCLDQLSKLIRLKNKQLKKLRGELAYPALLIGMMVTLLI 125

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           C+ T +            ND   +++LG     ++IG  ++  +I
Sbjct: 126 CMQTFLKTEMSD------NDWTSNLMLGGLVLLVIIGAFLISKII 164


>gi|199597324|ref|ZP_03210755.1| Type II secretory pathway/competence component [Lactobacillus
           rhamnosus HN001]
 gi|199591840|gb|EDY99915.1| Type II secretory pathway/competence component [Lactobacillus
           rhamnosus HN001]
          Length = 317

 Score = 34.7 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 54/159 (33%), Gaps = 8/159 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
                   ++AG  +SD  A +           ++ +      G++ S++++R       
Sbjct: 11  FCRQSAALMKAGFNLSDVFAYLQVSLPKHTA-IWKGIENELANGMAFSDAVAR------- 62

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           Q+++         +Q+ G+L++AL   +  L  R   + ++  L +       ++  L  
Sbjct: 63  QDLAPILFQQLQLAQVHGDLAKALTIAADYLHLRVRNRQRIVQLLVYPCLLLAMLVVLQI 122

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
            V   V        + L+      + +      +     
Sbjct: 123 VVVFGVLPALSLPQSNLVALQLIGLGVVTVIGLLGYCYW 161


>gi|150399724|ref|YP_001323491.1| flagellar assembly protein J [Methanococcus vannielii SB]
 gi|150012427|gb|ABR54879.1| type II secretion system protein [Methanococcus vannielii SB]
          Length = 558

 Score = 34.7 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 55/150 (36%), Gaps = 6/150 (4%)

Query: 13  LDDFPNALDIIVRSVRA-GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
             +FP+ L  +  SV A G  +++++  +      P+  +   + +   + +   ++   
Sbjct: 329 ELNFPDFLRSLGDSVCAKGGGMTESLQYLSSNDFGPLTKDLEGLYKRVSIRIDSQKAWRY 388

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                    +  FS +    + LGGN  EA   + +  R   N++             A 
Sbjct: 389 FGYDTCSYLIQLFSEMFERCTYLGGNAGEASNIIGKNFRKIINLRRSKYQN---VNQFAG 445

Query: 132 IIGSLPFCVSTLVYFTS--PGYMNVLINDP 159
           I+  L   ++  +Y +S     +N L    
Sbjct: 446 IMYGLAGGMALTLYASSGVASMVNGLYTSL 475


>gi|71899812|ref|ZP_00681962.1| fimbrial assembly protein [Xylella fastidiosa Ann-1]
 gi|71730403|gb|EAO32484.1| fimbrial assembly protein [Xylella fastidiosa Ann-1]
          Length = 176

 Score = 34.7 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 6/37 (16%), Positives = 15/37 (40%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS 50
            D       +   ++AG+P+  A+ ++     +P   
Sbjct: 123 KDIAFFSRQMATMMKAGVPIVGALDILANGQKNPRMR 159


>gi|307107739|gb|EFN55981.1| hypothetical protein CHLNCDRAFT_145340 [Chlorella variabilis]
          Length = 1469

 Score = 34.7 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 6/89 (6%), Positives = 20/89 (22%), Gaps = 2/89 (2%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL--GLSLSESISRMVRY 75
           + L  ++    +GL +  A+  +  +                 +     +  +       
Sbjct: 429 DLLAQLILDYESGLSIEAAIQRVRTRMEAWRVQVLLDFYGMSRIGGQHRVLPADVEAAAK 488

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALAN 104
                    +T +     +       L  
Sbjct: 489 HDWPLPFLSATYVRTMLDVHMEERRQLKR 517


>gi|268319773|ref|YP_003293429.1| competence protein ComGB [Lactobacillus johnsonii FI9785]
 gi|262398148|emb|CAX67162.1| competence protein ComGB [Lactobacillus johnsonii FI9785]
          Length = 333

 Score = 34.7 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 64/185 (34%), Gaps = 15/185 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + + +KK      D     +D + +++  G  ++ ++ ++           +R       
Sbjct: 4   LSNFLKKDKLNSADQL-IFIDYLRQALINGYSLNASLRLL--------PKIWRGNSRQLL 54

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                 E  S++   +     S         + + GNL   L  +S+++R +     K++
Sbjct: 55  YVNQRVEEGSQLGDVLQEVGFSSTLAAQINLAIIDGNLLSCLDQMSKLIRLKNKQLKKLK 114

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
                      ++ +L  C+ T +            ND   +++LG     +++ +  + 
Sbjct: 115 GELAYPALLVGMMVTLLICMQTFLKTEMSD------NDWTSNVMLGGLVLLVIVAVFFIS 168

Query: 181 LMINF 185
             I  
Sbjct: 169 KTIRL 173


>gi|227535498|ref|ZP_03965547.1| type II secretory pathway/competence component [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227186820|gb|EEI66887.1| type II secretory pathway/competence component [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 274

 Score = 34.7 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 53/161 (32%), Gaps = 12/161 (7%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
                   + AG  + D  A +   S    R  + R+      G+ L          +  
Sbjct: 9   FCRQSAALIAAGFSLPDVFAYL-RVSLPKYRPIWERIETDLASGIGL-------PEAVGH 60

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           Q ++         +Q+ G+L++ALA     L  R   + ++  L +       ++ +L  
Sbjct: 61  QALAPILFQQLQLAQVHGDLAKALAVAGDYLGLRVRNRQRIGQLLIYPLVLLGMLVTLQV 120

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            V   V        + L++      L+ +        ++ +
Sbjct: 121 VVVFGVLPALALPQSHLVHT----QLMTMGGGLAAGLLIWL 157


>gi|330952551|gb|EGH52811.1| type II secretion system protein [Pseudomonas syringae Cit 7]
          Length = 363

 Score = 34.7 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 41/139 (29%), Gaps = 5/139 (3%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
              L  I   +RA +   +A+  +   ++  +R           +G +  E++       
Sbjct: 228 STFLLNIAVMLRANIDPLEALDTLKRGANPWLRERLEAAHYGVRMGKNFGEALDLSGHRF 287

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
           P  E   F  V+S        +               ++K   +     +  S  +IG L
Sbjct: 288 PDHEAIQFLIVLSTTHSFSAAVHRYSLR-----WLEISLKQVERYAKSLSLVSMVLIGLL 342

Query: 137 PFCVSTLVYFTSPGYMNVL 155
              V    Y  +      +
Sbjct: 343 MILVMVGAYSMTGNATQGM 361


>gi|284008394|emb|CBA74813.1| protein transport protein [Arsenophonus nasoniae]
          Length = 338

 Score = 34.7 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 12/152 (7%), Positives = 47/152 (30%), Gaps = 4/152 (2%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            +  +   +++ + +  ++ +I  +      S ++ ++      ++  E+ S  ++  P 
Sbjct: 3   FMYQLSVLLKSNISLIQSLNIIQKECH---MSVWKCILAEIIKRINQGEAFSATLKCYPK 59

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    +   +L +    + + L+ ++ +K K+            I   +  
Sbjct: 60  L-FPEIIYRLIEIGEHTNSLEKNCQLIYQQLQQQQILKQKITKALQYPCIILIIASIVVS 118

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
            +   V                    L +  +
Sbjct: 119 LMLFFVLPEFKAIYQTFNAQLPIATRLLIIIS 150


>gi|42518831|ref|NP_964761.1| hypothetical protein LJ0906 [Lactobacillus johnsonii NCC 533]
 gi|41583117|gb|AAS08727.1| hypothetical protein LJ_0906 [Lactobacillus johnsonii NCC 533]
          Length = 333

 Score = 34.7 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 63/185 (34%), Gaps = 15/185 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + + +KK      D     +D + +++  G  ++ ++ ++           +R       
Sbjct: 4   LSNFLKKDKLNSADQL-IFIDYLRQALINGYSLNASLRLL--------PKIWRGNSRQLL 54

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                 E  S++   +     S         + + GNL   L  +S+++R +     K++
Sbjct: 55  YVNQRVEEGSQLGDVLQEVGFSSTLAAQINLAVIDGNLLSCLDQMSKLIRLKNKQLKKLK 114

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
                      ++ +L  C+ T +            ND   +++LG     ++  +  + 
Sbjct: 115 GELAYPALLVGMMVTLLICMQTFLKTEMSD------NDLTSNVMLGGLILLVITAVFFIS 168

Query: 181 LMINF 185
             I  
Sbjct: 169 KTIRL 173


>gi|238796140|ref|ZP_04639651.1| hypothetical protein ymoll0001_4790 [Yersinia mollaretii ATCC
           43969]
 gi|238720085|gb|EEQ11890.1| hypothetical protein ymoll0001_4790 [Yersinia mollaretii ATCC
           43969]
          Length = 364

 Score = 34.7 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 48/159 (30%), Gaps = 7/159 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           D       +   V A LP+ +A+  +  QS         R +  Q     L         
Sbjct: 26  DLVLLTRQLSTLVAAALPLEEALLALAQQSE----KPRHRALLQQVRNKILEGQPLAEAL 81

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
               +  S     +    +  G+L + L  L+      + +K+K+    +       + G
Sbjct: 82  ACFPKTFSSLFRTMIAAGEASGHLDQVLLRLADNAEQSQKLKSKMLQALIYPL---VLTG 138

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
                V+ L+    P  +   I+  +   L       + 
Sbjct: 139 VAITVVAILLTAVVPKVVEQFIHMQQALPLSTRLLISLS 177


>gi|15668961|ref|NP_247765.1| hypothetical protein MJ_0780 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2833585|sp|Q58190|Y780_METJA RecName: Full=Uncharacterized protein MJ0780
 gi|1499600|gb|AAB98779.1| hypothetical protein MJ_0780 [Methanocaldococcus jannaschii DSM
           2661]
          Length = 335

 Score = 34.7 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 59/178 (33%), Gaps = 5/178 (2%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGL-SLS 66
             +        L  ++  +RAG  + + +  I   +    V  E + +I   ++G  +L 
Sbjct: 158 KGEIKLQILFTLIYMISILRAGASLPEVLESISKSREYGVVAFEAKSIIRDVNIGGYNLV 217

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME- 125
           E++ R      +  +      + V     GNL   L  L   +     +K       ++ 
Sbjct: 218 EALERAKMRTRIPILKKLYDQMIV-GYNKGNLPLLLGKLYEDIVRESMVKLDSSKFMIQN 276

Query: 126 -AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
               +  +   LPF    L         + +++     +L       ++ GI V   +
Sbjct: 277 LGNLAFGVGLILPFTGMILSTMIGNQGFSGILSTINLLLLKIGPLLTLIFGIFVKLKI 334


>gi|296504739|ref|YP_003666439.1| ComG operon protein 2 [Bacillus thuringiensis BMB171]
 gi|296325791|gb|ADH08719.1| ComG operon protein 2 [Bacillus thuringiensis BMB171]
          Length = 343

 Score = 34.7 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 60/174 (34%), Gaps = 20/174 (11%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L  +   +  G  +  A+  +  Q     + + +R+IE    G SL +S  ++  +  +
Sbjct: 14  LLKRLGELLEKGYSLLQALEFLQFQLPVEKKVQLQRMIEGLKDGKSLHDSFHQLKFHQDM 73

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
               F++       +  G++S AL   S +L  +   +  +  +        + +  + F
Sbjct: 74  LSYLFYA-------EQHGDISFALQQGSGLLYKKDKYRRDMMKIMHYPMFLMFFLLIMLF 126

Query: 139 CVSTLVYFTSPGYMNVLINDPRGH-------------MLLGVAAAFMLIGIMVM 179
               ++        +   ++                 ++L      ++ GI+ M
Sbjct: 127 IFKLILLPQVEMVYSSFGSNTPLLTEKILSAIKLLPYIILTAILTVIIGGILYM 180


>gi|305664034|ref|YP_003860322.1| Type II secretion system F domain [Ignisphaera aggregans DSM 17230]
 gi|304378603|gb|ADM28442.1| Type II secretion system F domain [Ignisphaera aggregans DSM 17230]
          Length = 536

 Score = 34.7 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 9/164 (5%), Positives = 43/164 (26%), Gaps = 3/164 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           +       F   +  +  +       + ++  I+      +    +R+      G+  + 
Sbjct: 299 KVKNIESFFTVFIRSLGLAFTTLRNYAQSLRSILRTDFGELTKPLQRLYSRLRNGVDRNI 358

Query: 68  SISRMVRYMPLQEVSFFSTVI---SVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           ++   +     + V     +             + E L+   + + + +  + ++     
Sbjct: 359 AMYFFIGETGSETVRRGMDIFYDAVESGGDPTKVGEILSTTIQRIINLRKQREQIARAFQ 418

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168
                  I+      +   +       +  +   P   + +   
Sbjct: 419 GVIYILHILTVALAEIVFTLVILFQQLIQAMGTMPIQIIPMTYI 462


>gi|295695363|ref|YP_003588601.1| Type II secretion system F domain protein [Bacillus tusciae DSM
           2912]
 gi|295410965|gb|ADG05457.1| Type II secretion system F domain protein [Bacillus tusciae DSM
           2912]
          Length = 327

 Score = 34.7 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 44/126 (34%), Gaps = 7/126 (5%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           ++   + AG+ + + +A +       V    R V +    G SLSE++ R  +    +E+
Sbjct: 200 LLGTMLAAGVSLEETLAHLG-SLRTRVSGAARYVRQRMSEGESLSEALGRWPQCT--EEL 256

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                +     Q+   L      ++     R+  + ++    +E   +  I   +     
Sbjct: 257 RRVVELALWTGQMDTALLVLAERIAT----RQRRRTELWIRWLEPALTGVIGVLILGIFL 312

Query: 142 TLVYFT 147
            L    
Sbjct: 313 LLYLPI 318


>gi|191637965|ref|YP_001987131.1| Type II secretory pathway/competence component [Lactobacillus casei
           BL23]
 gi|190712267|emb|CAQ66273.1| Type II secretory pathway/competence component [Lactobacillus casei
           BL23]
          Length = 315

 Score = 34.7 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 53/161 (32%), Gaps = 12/161 (7%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
                   + AG  + D  A +   S    R  + R+      G+ L          +  
Sbjct: 9   FCRQSAALIAAGFSLPDVFAYL-RVSLPKYRPIWERIETDLASGIGL-------PEAVGH 60

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           Q ++         +Q+ G+L++ALA     L  R   + ++  L +       ++ +L  
Sbjct: 61  QALAPILFQQLQLAQVHGDLAKALAVAGDYLGLRVRNRQRIGQLLIYPLVLLGMLVTLQV 120

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            V   V        + L++      L+ +        ++ +
Sbjct: 121 VVVFGVLPALALPQSHLVHT----QLMTMGGGLAAGLLIWL 157


>gi|195475066|ref|XP_002089806.1| GE22247 [Drosophila yakuba]
 gi|194175907|gb|EDW89518.1| GE22247 [Drosophila yakuba]
          Length = 2172

 Score = 34.7 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 29/106 (27%), Gaps = 5/106 (4%)

Query: 13   LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             +    A   +VR++ AG+ +      I    S  +       +         S +  + 
Sbjct: 1211 ENRMRTAAHQMVRNLAAGMAMITGKDEIARAISQNLHKALLSAL-----NGMPSMAEIQA 1265

Query: 73   VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
                   E          ++      +E    LS     RK  + +
Sbjct: 1266 AAMQLASENVELVCAFIQKTSAEKAAAEIDRRLSTDFETRKIAREE 1311


>gi|157692971|ref|YP_001487433.1| competence protein GB [Bacillus pumilus SAFR-032]
 gi|157681729|gb|ABV62873.1| competence protein GB [Bacillus pumilus SAFR-032]
          Length = 346

 Score = 34.7 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 48/139 (34%), Gaps = 7/139 (5%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
              L  + + ++AG  + +A+ ++  Q S+  + +    I+    G      + ++    
Sbjct: 15  AECLSKLSQLIQAGYTLIEALTMVNIQLSNKQQQQLTPGIQWLLEGEPFYIVLEKL---- 70

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
              +       I   S+  G+L+ AL   +R L  +       + +        + +  +
Sbjct: 71  ---QFQREVIAILSFSEKHGSLATALEQSARFLEKKIKQTDTFKRMLRYPIFLIFTVSIV 127

Query: 137 PFCVSTLVYFTSPGYMNVL 155
              V  ++        + +
Sbjct: 128 LILVQQMIIPQFSLLYSSM 146


>gi|154706584|ref|YP_001425262.1| type 4 pili biogenesis protein (plasma membrane protein) [Coxiella
           burnetii Dugway 5J108-111]
 gi|154355870|gb|ABS77332.1| type 4 pili biogenesis protein (plasma membrane protein) [Coxiella
           burnetii Dugway 5J108-111]
          Length = 351

 Score = 34.7 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 46/131 (35%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            + ++     AG+P++ A+        +  +R    ++      G+S S +I R   +  
Sbjct: 221 WIKVLATLSAAGIPLNKALITANHIIRNHALRQALDKLPCWISEGVSFSTAIERCGFFSH 280

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +  +    +  G L+E L  ++ I ++  + +    +  +E      +   + 
Sbjct: 281 Q------AIQLIHIGENSGTLNEMLNKVAVIYQEEIDERYDRLSECLEPAIMIVLALLIG 334

Query: 138 FCVSTLVYFTS 148
             +  +     
Sbjct: 335 GLIIAMYLPVF 345


>gi|299823012|ref|ZP_07054898.1| general secretion pathway protein F [Listeria grayi DSM 20601]
 gi|299816541|gb|EFI83779.1| general secretion pathway protein F [Listeria grayi DSM 20601]
          Length = 343

 Score = 34.7 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 18/173 (10%), Positives = 43/173 (24%), Gaps = 13/173 (7%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           + L  I + +  GLP+  A++ +              + E          +       + 
Sbjct: 14  DFLIRIAKLLEQGLPLETAISFLSITLPKERARFQYIIAEL--------RAGKEFAVSLK 65

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                 F       S   G     L      +  + +   K++            + ++ 
Sbjct: 66  NASFPDFICAQIFYSNRHGYFITTLRETGEHMLRKADELKKLRKTFQYPVILCVTLSTVF 125

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-----AFMLIGIMVMRLMINF 185
             +   +        N L         L           + + + +  L+I F
Sbjct: 126 ILLRLFLLPKFDLLFNQLQKQDIATTSLLYFLLEKLPLLIGVIMFISALLITF 178


>gi|227889670|ref|ZP_04007475.1| type II secretory pathway/competence component [Lactobacillus
           johnsonii ATCC 33200]
 gi|227849813|gb|EEJ59899.1| type II secretory pathway/competence component [Lactobacillus
           johnsonii ATCC 33200]
          Length = 333

 Score = 34.7 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 64/185 (34%), Gaps = 15/185 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + + +KK      D     +D + +++  G  ++ ++ ++           +R       
Sbjct: 4   LSNFLKKDKLNSADQL-IFIDYLRQALINGYSLNASLRLL--------PKIWRGNSRQLL 54

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                 E  S++   +     S         + + GNL   L  +S+++R +     K++
Sbjct: 55  YVNQRVEEGSQLGDVLQEVGFSSTLAAQINLAIIDGNLLSCLDQMSKLIRLKNKQLKKLK 114

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
                      ++ +L  C+ T +            ND   +++LG     +++ +  + 
Sbjct: 115 GELAYPALLVGMMVTLLICMQTFLKTEMSD------NDWTSNVMLGGLVLLVIVAVFFIS 168

Query: 181 LMINF 185
             I  
Sbjct: 169 KTIRL 173


>gi|15618726|ref|NP_225012.1| general secretion protein F [Chlamydophila pneumoniae CWL029]
 gi|15836350|ref|NP_300874.1| general secretion protein F [Chlamydophila pneumoniae J138]
 gi|16752223|ref|NP_445591.1| general secretion pathway protein F [Chlamydophila pneumoniae AR39]
 gi|33242177|ref|NP_877118.1| XcpS [Chlamydophila pneumoniae TW-183]
 gi|4377129|gb|AAD18955.1| General Secretion Protein F [Chlamydophila pneumoniae CWL029]
 gi|7189967|gb|AAF38827.1| general secretion pathway protein F [Chlamydophila pneumoniae AR39]
 gi|8979191|dbj|BAA99025.1| general secretion protein F [Chlamydophila pneumoniae J138]
 gi|33236688|gb|AAP98775.1| XcpS [Chlamydophila pneumoniae TW-183]
          Length = 391

 Score = 34.7 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 64/197 (32%), Gaps = 20/197 (10%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ- 59
           ++ +  +R +    +       ++  +R+GLP+ +++  +  Q  +              
Sbjct: 42  IREVALRRMSIKSTELIVFTKQLLLLLRSGLPLYESLVSLRDQYHEQKMGLLLTSFMETL 101

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G SLS++++             F        +  GNL   L N+  +L +R  +  K+
Sbjct: 102 RSGGSLSQAMAAHPNIFDH-----FYCSGVAAGESVGNLEGCLQNIIVVLEERAQITKKM 156

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML--------------L 165
                          ++       V  +       +       ++              L
Sbjct: 157 VGALSYPCVLLVFSFAVMLFFLLGVIPSLKETFENMEVKGLTKIVFGVSDCLSAYRYLFL 216

Query: 166 GVAAAFMLIGIMVMRLM 182
           G A+A + +GI++   +
Sbjct: 217 GFASALITVGILMRHRI 233


>gi|167032606|ref|YP_001667837.1| Mg2 transporter protein CorA family protein [Pseudomonas putida
           GB-1]
 gi|166859094|gb|ABY97501.1| Mg2 transporter protein CorA family protein [Pseudomonas putida
           GB-1]
          Length = 331

 Score = 34.7 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 15/142 (10%), Positives = 37/142 (26%), Gaps = 5/142 (3%)

Query: 45  SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALA- 103
              ++   RR    +       E  +++ R          +   +  +       E L  
Sbjct: 188 QGSLQQIRRRAAGLRRFLAPQREIYAQLSRSKWSWFADADADYWNELNNSLIRYLEELEL 247

Query: 104 ---NLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
                + +L      +++    +M  +        LP    T +   + G +    N   
Sbjct: 248 TRERAALVLESEDRRRSERMNRTMY-RFGIITCIFLPMSFITGLLGINVGGIPGADNPLG 306

Query: 161 GHMLLGVAAAFMLIGIMVMRLM 182
                 V     +    + R +
Sbjct: 307 FLFACIVVLGLAVGQWWLFRRL 328


>gi|46907572|ref|YP_013961.1| general secretion pathway protein F [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47093624|ref|ZP_00231381.1| comG operon protein 2 [Listeria monocytogenes str. 4b H7858]
 gi|226223947|ref|YP_002758054.1| comG operon protein 2 (ComGB) [Listeria monocytogenes Clip81459]
 gi|254824595|ref|ZP_05229596.1| general secretion pathway protein F [Listeria monocytogenes FSL
           J1-194]
 gi|254852605|ref|ZP_05241953.1| general secretion pathway protein F [Listeria monocytogenes FSL
           R2-503]
 gi|254932339|ref|ZP_05265698.1| general secretion pathway protein F [Listeria monocytogenes
           HPB2262]
 gi|254992319|ref|ZP_05274509.1| comG operon protein 2 (ComGB) [Listeria monocytogenes FSL J2-064]
 gi|255520220|ref|ZP_05387457.1| comG operon protein 2 (ComGB) [Listeria monocytogenes FSL J1-175]
 gi|300765414|ref|ZP_07075396.1| hypothetical protein LMHG_12545 [Listeria monocytogenes FSL N1-017]
 gi|46880840|gb|AAT04138.1| general secretion pathway protein F [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47018000|gb|EAL08776.1| comG operon protein 2 [Listeria monocytogenes str. 4b H7858]
 gi|225876409|emb|CAS05118.1| Putative comG operon protein 2 (ComGB) [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258605919|gb|EEW18527.1| general secretion pathway protein F [Listeria monocytogenes FSL
           R2-503]
 gi|293583895|gb|EFF95927.1| general secretion pathway protein F [Listeria monocytogenes
           HPB2262]
 gi|293593833|gb|EFG01594.1| general secretion pathway protein F [Listeria monocytogenes FSL
           J1-194]
 gi|300513851|gb|EFK40916.1| hypothetical protein LMHG_12545 [Listeria monocytogenes FSL N1-017]
 gi|332311787|gb|EGJ24882.1| General secretion pathway protein [Listeria monocytogenes str.
           Scott A]
          Length = 343

 Score = 34.7 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 14/128 (10%), Positives = 41/128 (32%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +   +++GL ++  + +   + S        R      +  +L + +S       +  
Sbjct: 215 RELGYLLKSGLSITHIMHLFAQEESPAFFQAIAR-----QILPTLEQGLSLTKALEKMPI 269

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
                  I++  +  GNL+E       +   +   K +     ++      I   +    
Sbjct: 270 FERELYYIAIHGEKNGNLAEEFLFYYNLCHQKSLQKTEKLFSFIQPIVFIVIGILIVSIY 329

Query: 141 STLVYFTS 148
            +++Y   
Sbjct: 330 LSILYPMF 337


>gi|313200814|ref|YP_004039472.1| type II secretion system protein [Methylovorus sp. MP688]
 gi|312440130|gb|ADQ84236.1| type II secretion system protein [Methylovorus sp. MP688]
          Length = 395

 Score = 34.7 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 45/145 (31%), Gaps = 8/145 (5%)

Query: 35  DAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ 93
           +A+  +   +    VR   R  +   + G  LS+++       P              S+
Sbjct: 78  EAMEALSEKEQRPQVRDTLRATLRLLNEGQPLSQAMEASPEAFPP-----LYVAALRASE 132

Query: 94  LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153
             G + EAL          + +K KV + S+       + G +   +   V         
Sbjct: 133 KTGGMPEALQRYIAYQSQVEEVKKKVISASIYPVMLIVVGGLVVMFLMGFVVPRFAHIYE 192

Query: 154 VLINDPRG--HMLLGVAAAFMLIGI 176
            +  D      +LL +       G+
Sbjct: 193 DMNGDMPFMSQLLLALGGFIETHGM 217


>gi|229129521|ref|ZP_04258492.1| ComG operon protein 2 [Bacillus cereus BDRD-Cer4]
 gi|228654126|gb|EEL09993.1| ComG operon protein 2 [Bacillus cereus BDRD-Cer4]
          Length = 330

 Score = 34.7 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 60/174 (34%), Gaps = 20/174 (11%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L  +   +  G  +  A+  +  Q     + + +R+IE    G SL +S  ++  +  +
Sbjct: 1   MLKRLGELLEKGYSLLQALEFLQFQLPVEKKVQLQRMIEGLKDGKSLHDSFHQLKFHQDM 60

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
               F++       +  G++S AL   S +L  +   +  +  +        + +  + F
Sbjct: 61  LSYLFYA-------EQHGDISFALQQGSALLYKKDKYRRDMMKIMQYPMFLMFFLLIMLF 113

Query: 139 CVSTLVYFTSPGYMNVLINDPRGH-------------MLLGVAAAFMLIGIMVM 179
               ++        +   ++                 ++L      ++ GI+ M
Sbjct: 114 IFKLILLPQVEMVYSSFGSNTPLLTEQILSAIKLLPYIILTAILTVIIGGILYM 167


>gi|222823428|ref|YP_002575002.1| type II protein secretion system F protein CtsF [Campylobacter lari
           RM2100]
 gi|222538650|gb|ACM63751.1| putative type II protein secretion system F protein CtsF
           [Campylobacter lari RM2100]
          Length = 321

 Score = 34.7 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 11/129 (8%), Positives = 35/129 (27%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
              I    ++AG+ +  A  +      +          +   +  S    +     +  +
Sbjct: 191 FFLIFSYLLKAGVDIKRAFDLACEGIENQFFK-----NKMFIIKTSFESGLDLDQAFFKI 245

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +    F   +   +     L E+   L+     +K    +     +E   + ++   +  
Sbjct: 246 KLFEPFVIRMLKLALKSSKLDESTYELALFYEHKKENYTQRLLSVLEPLMTIFMASLILV 305

Query: 139 CVSTLVYFT 147
               +    
Sbjct: 306 LALGVFLPM 314


>gi|29653512|ref|NP_819204.1| type 4 pili biogenesis protein (plasma membrane protein) [Coxiella
           burnetii RSA 493]
 gi|29540774|gb|AAO89718.1| type 4 pili biogenesis protein (plasma membrane protein) [Coxiella
           burnetii RSA 493]
          Length = 351

 Score = 34.7 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 46/131 (35%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            + ++     AG+P++ A+        +  +R    ++      G+S S +I R   +  
Sbjct: 221 WIKVLATLSAAGIPLNKALITANHIIRNHALRQALDKLPCWISEGVSFSTAIERCGFFPH 280

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +  I    +  G L+E L  ++ I ++  + +    +  +E      +   + 
Sbjct: 281 Q------AIQIIHIGENSGTLNEMLNKVAVIYQEEIDERYDRLSECLEPAIMIVLALLIG 334

Query: 138 FCVSTLVYFTS 148
             +  +     
Sbjct: 335 GLIIAMYLPVF 345


>gi|296273939|ref|YP_003656570.1| Type II secretion system F domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098113|gb|ADG94063.1| Type II secretion system F domain protein [Arcobacter nitrofigilis
           DSM 7299]
          Length = 398

 Score = 34.7 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 16/161 (9%), Positives = 52/161 (32%), Gaps = 7/161 (4%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
               +        +   + + + + DA+ ++     +        ++ +    L    +I
Sbjct: 52  KASEEQIIELFIQLSIMLDSNILLIDAIKILQKSIKNSH---LSDILNSMESALQNGRAI 108

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            +       ++++          +  GN+   +A LS +L+ R   K  ++         
Sbjct: 109 YK-ALEKYEKDLNPIIIPFFKIFEKNGNIKAVIAALSTLLKIRLKNKKDLKNSLRYPI-- 165

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             ++ +    +S +  F  P + N+ +       +  +   
Sbjct: 166 -IVMVTFILALSMIFIFVVPKFENIFLQYHMQLPISTILLL 205


>gi|163942002|ref|YP_001646886.1| type II secretion system protein [Bacillus weihenstephanensis
           KBAB4]
 gi|163864199|gb|ABY45258.1| type II secretion system protein [Bacillus weihenstephanensis
           KBAB4]
          Length = 345

 Score = 34.3 bits (77), Expect = 6.9,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 43/128 (33%), Gaps = 7/128 (5%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
            +   +  GL V +A+ +++ Q+     + E  R+      G  L   I +         
Sbjct: 218 QLSGLLHGGLSVHEALTIMMKQNYHPFFQYEADRIERQLIAGEPLQSIIDKSG------Y 271

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
                + I    Q  GNL+  L + S ++ ++   K K     ++      +   +    
Sbjct: 272 YEKELSYIITHGQANGNLANELGDYSELIIEKVEQKIKRMLFVIQPILFTCLGVIVILMY 331

Query: 141 STLVYFTS 148
             ++    
Sbjct: 332 LAMIMPMF 339



 Score = 34.3 bits (77), Expect = 8.8,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 62/184 (33%), Gaps = 11/184 (5%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR     D        +   +  G  +  A+  +  Q     + + +R+IE    G SL 
Sbjct: 5   KRKWSLSDQ-ALLCKRLSDLLEKGYSLLQALEFLQLQLPLGKKLQLQRMIEGLKNGQSLH 63

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            S  ++                   ++  G++S AL   S +L  +   +  +  +    
Sbjct: 64  ASFHQL-------MFHSEMLSYLFYAERHGDISFALQQGSVLLYKKDKYRKDMMKVMRYP 116

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLIND---PRGHMLLGVAAAFMLIGIMVMRLMI 183
              ++ +  +    + ++        + L +        +L+ +      I ++V+ ++ 
Sbjct: 117 MFLSFFLMIMLSVFNLILLPQFEMMYSSLRSTAPPLTEQILVAIKLLPYFIYMIVLIVIT 176

Query: 184 NFDV 187
            F +
Sbjct: 177 GFSI 180


>gi|194858469|ref|XP_001969185.1| GG25279 [Drosophila erecta]
 gi|190661052|gb|EDV58244.1| GG25279 [Drosophila erecta]
          Length = 2175

 Score = 34.3 bits (77), Expect = 6.9,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 29/106 (27%), Gaps = 5/106 (4%)

Query: 13   LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             +    A   +VR++ AG+ +      I    S  +       +         S +  + 
Sbjct: 1214 ENRMRTAAHQMVRNLAAGMAMITGKDEIARAISQNLHKALLSAL-----NGMPSMAEIQA 1268

Query: 73   VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
                   E          ++      +E    LS     RK  + +
Sbjct: 1269 AAMQLASENVELVCAFIQKTSAEKAAAEIDRRLSTDFETRKIAREE 1314


>gi|294812767|ref|ZP_06771410.1| Putative sodium:solute symporter [Streptomyces clavuligerus ATCC
           27064]
 gi|294325366|gb|EFG07009.1| Putative sodium:solute symporter [Streptomyces clavuligerus ATCC
           27064]
          Length = 577

 Score = 34.3 bits (77), Expect = 7.0,   Method: Composition-based stats.
 Identities = 9/77 (11%), Positives = 24/77 (31%), Gaps = 1/77 (1%)

Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY-MNVLINDPRGHMLLGVAAA 170
            +  ++K + L    +   W+       +      T  G  +        G M++ +   
Sbjct: 61  MRRARSKSEFLVAGRRLGPWMYSGTMAAIVLGGASTIGGVGLGYKYGLSGGWMVVTIGLG 120

Query: 171 FMLIGIMVMRLMINFDV 187
            + + I+    +    V
Sbjct: 121 LLALSILFSARIARLKV 137


>gi|229551836|ref|ZP_04440561.1| type II secretory pathway/competence component protein
           [Lactobacillus rhamnosus LMS2-1]
 gi|258539237|ref|YP_003173736.1| type II secretory pathway/competence component [Lactobacillus
           rhamnosus Lc 705]
 gi|229314780|gb|EEN80753.1| type II secretory pathway/competence component protein
           [Lactobacillus rhamnosus LMS2-1]
 gi|257150913|emb|CAR89885.1| Type II secretory pathway/competence component [Lactobacillus
           rhamnosus Lc 705]
          Length = 317

 Score = 34.3 bits (77), Expect = 7.0,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 55/159 (34%), Gaps = 8/159 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
                   ++AG  +SD  A +           ++ +      G++ S++++R       
Sbjct: 11  FCRQSAALMKAGFNLSDVFAYLQVSLPKHTA-IWQGIENELANGIAFSDAVAR------- 62

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           Q+++         +Q+ G+L++AL   +  L  R   + ++  L +       ++  L  
Sbjct: 63  QDLAPILFQQLQLAQVHGDLAKALTIAADYLHLRVRNRQRIVQLLVYPCLLLAMLVVLQI 122

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
            V   V        + L+      + +     F+     
Sbjct: 123 VVVFGVLPALSLPQSNLVALQLIGLGVVTVIGFLGYCYW 161


>gi|195119672|ref|XP_002004353.1| GI19666 [Drosophila mojavensis]
 gi|193909421|gb|EDW08288.1| GI19666 [Drosophila mojavensis]
          Length = 2181

 Score = 34.3 bits (77), Expect = 7.0,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 5/106 (4%)

Query: 13   LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             +    A   +VR++ AG+ +      I    S  +   F   +        +  +  ++
Sbjct: 1203 ENRMRTAAHQMVRNLAAGMAMITGKDEIARAISQNLHKAFMAALTGVPSMSDIQAASMQL 1262

Query: 73   VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
                   E          ++    +  E    LS     RK  + +
Sbjct: 1263 AN-----ENVELVCAFIQKTSAEKSALEIDRRLSTDFETRKIAREE 1303


>gi|256374433|ref|YP_003098093.1| type II secretion system protein [Actinosynnema mirum DSM 43827]
 gi|255918736|gb|ACU34247.1| type II secretion system protein [Actinosynnema mirum DSM 43827]
          Length = 185

 Score = 34.3 bits (77), Expect = 7.1,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 51/142 (35%), Gaps = 4/142 (2%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                 D+   ++R+GLPV  A+  ++  +         +V +   LG   + +      
Sbjct: 45  ALAETWDLFAAALRSGLPVPSALHAVLPGTPPGPAERLGQVRDLLALGADPATAWDPA-- 102

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII- 133
            +     +  +      ++ G  L++ +A+L+  LR      A+ +A       +  +  
Sbjct: 103 -LDHPATAPLARSARRTARSGAALADQVADLAARLRASAADDAESRAQRAAVLVAGPLSL 161

Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155
             LP  +   V     G  + L
Sbjct: 162 CFLPAFLCLGVAPVLIGIASGL 183


>gi|215435046|gb|ACJ66890.1| hypothetical protein Bsb_10 [Bacillus subtilis]
          Length = 255

 Score = 34.3 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 62/181 (34%), Gaps = 3/181 (1%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           ++   KR    L D       +   +++G  +  A+       S+ ++++  RV+++   
Sbjct: 65  RNKKMKREIALLKDLNTYATTMTFFLQSGKNLRAALEATRPSLSERLQNDIERVLKSLDE 124

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
             SLS  +S   +Y     +  F+ V+ +    GG+ S     ++  +        ++  
Sbjct: 125 D-SLSPDMSVFDKYKFSP-IKAFNDVLIISRDEGGDKSTMFNRVNENINFAITKHDEMVR 182

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML-LGVAAAFMLIGIMVMR 180
                    + I      +  ++   S      + +    + + +     F  + I  + 
Sbjct: 183 GKKIVAKQIYFIIGAMLSIPVMLSCLSTFLSTQMYDQFLFYPISIVGVIIFFAVMITWLF 242

Query: 181 L 181
            
Sbjct: 243 K 243


>gi|327382041|gb|AEA53517.1| ComG operon protein 1 [Lactobacillus casei LC2W]
 gi|327385195|gb|AEA56669.1| ComG operon protein 1 [Lactobacillus casei BD-II]
          Length = 317

 Score = 34.3 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 53/161 (32%), Gaps = 12/161 (7%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
                   + AG  + D  A +   S    R  + R+      G+ L          +  
Sbjct: 11  FCRQSAALIAAGFSLPDVFAYL-RVSLPKYRPIWERIETDLASGIGL-------PEAVGH 62

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           Q ++         +Q+ G+L++ALA     L  R   + ++  L +       ++ +L  
Sbjct: 63  QALAPILFQQLQLAQVHGDLAKALAVAGDYLGLRVRNRQRIGQLLIYPLVLLGMLVTLQV 122

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            V   V        + L++      L+ +        ++ +
Sbjct: 123 VVVFGVLPALALPQSHLVHT----QLMTMGGGLAAGLLIWL 159


>gi|90407997|ref|ZP_01216170.1| putative iron permease [Psychromonas sp. CNPT3]
 gi|90310935|gb|EAS39047.1| putative iron permease [Psychromonas sp. CNPT3]
          Length = 627

 Score = 34.3 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 59/178 (33%), Gaps = 25/178 (14%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            I  R A F  +  ++   IV  +RAG  V  A+                   E   L +
Sbjct: 307 KIGARDATFKAELESSFTKIVSLIRAGKSV-RAIED-----------------EIDKLEI 348

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           +L+ ++  + +        F  +++ +  +    +    A ++ +++++   K  +   S
Sbjct: 349 NLNIAVQMLSKENQTPWSLFLYSLMIIVREGLEAMLVVAAIIAYLIKNKHEDKLTIVKNS 408

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           +     A ++ +L F             +        G  +L  A     +   ++  
Sbjct: 409 VVVALVASVVTALIFKFILDNSGAKQEILE-------GVTMLLAALVLFFVSYWLIAK 459


>gi|161830293|ref|YP_001596123.1| type IV-A pilus assembly protein PilC [Coxiella burnetii RSA 331]
 gi|161762160|gb|ABX77802.1| type IV-A pilus assembly protein PilC [Coxiella burnetii RSA 331]
          Length = 351

 Score = 34.3 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 46/131 (35%), Gaps = 7/131 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            + ++     AG+P++ A+        +  +R    ++      G+S S +I R   +  
Sbjct: 221 WIKVLATLSAAGIPLNKALITANHIIRNHALRQALDKLPCWISEGVSFSTAIERCGFFSH 280

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +  +    +  G L+E L  ++ I ++  + +    +  +E      +   + 
Sbjct: 281 Q------AIQLIHIGENSGTLNEMLNKVAVIYQEEIDERYDRLSECLEPAIMIVLALLIG 334

Query: 138 FCVSTLVYFTS 148
             +  +     
Sbjct: 335 GLIIAMYLPVF 345


>gi|83590101|ref|YP_430110.1| O-antigen polymerase [Moorella thermoacetica ATCC 39073]
 gi|83573015|gb|ABC19567.1| O-antigen polymerase [Moorella thermoacetica ATCC 39073]
          Length = 832

 Score = 34.3 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 1/67 (1%)

Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
           R+  + +V   +         + +L F    L+ F  P +   L         L +AA  
Sbjct: 48  RRRTEDQVAEETFWPDKGNRTLFALAFSGLILLLF-YPPFFRGLFFPVEQRWTLILAAVI 106

Query: 172 MLIGIMV 178
                + 
Sbjct: 107 FFFAYLW 113


>gi|227875718|ref|ZP_03993846.1| possible cell divisionFtsK/SpoIIIE [Mobiluncus mulieris ATCC 35243]
 gi|269976733|ref|ZP_06183709.1| FHA domain-containing protein [Mobiluncus mulieris 28-1]
 gi|227843660|gb|EEJ53841.1| possible cell divisionFtsK/SpoIIIE [Mobiluncus mulieris ATCC 35243]
 gi|269935098|gb|EEZ91656.1| FHA domain-containing protein [Mobiluncus mulieris 28-1]
          Length = 1124

 Score = 34.3 bits (77), Expect = 7.5,   Method: Composition-based stats.
 Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV-MRLMINF 185
           P  +  +++   P    + +    G  +L +      + +   MR + N 
Sbjct: 123 PGSLRWMLFMFLPLVFMLGLGAFIGWRVLVIFVLLAGVALWWFMRRLSNI 172


>gi|283797115|ref|ZP_06346268.1| conserved hypothetical protein [Clostridium sp. M62/1]
 gi|291075532|gb|EFE12896.1| conserved hypothetical protein [Clostridium sp. M62/1]
          Length = 290

 Score = 34.3 bits (77), Expect = 7.5,   Method: Composition-based stats.
 Identities = 13/144 (9%), Positives = 46/144 (31%), Gaps = 2/144 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            +K +  +   + P  +  I + +++   V   +      +   +  E   ++       
Sbjct: 137 KLKAKREEIEGELPRMVATIEQELKSSRNVIGMLERFKTNAGPALTGELDILLADMRS-S 195

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           +   +++R    +    +S     +    +   ++      L+   +  +  + K +A  
Sbjct: 196 NYEAALTRFEARLNSPMLSDVVRGLIGVLRGDDSVV-YFQMLAHDFKQIELQRLKAEAQK 254

Query: 124 MEAKASAWIIGSLPFCVSTLVYFT 147
           +  K   +    L   + T +   
Sbjct: 255 IPPKIRVFSFAMLMCFLLTYLAII 278


>gi|116494527|ref|YP_806261.1| Type II secretory pathway/competence component [Lactobacillus casei
           ATCC 334]
 gi|116104677|gb|ABJ69819.1| Type II secretory pathway/competence component [Lactobacillus casei
           ATCC 334]
          Length = 317

 Score = 34.3 bits (77), Expect = 7.5,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 53/161 (32%), Gaps = 12/161 (7%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
                   + AG  + D  A +   S    R  + R+      G+ L          +  
Sbjct: 11  FCRQSAALIAAGFSLPDVFAYL-RVSLPKYRPIWERIETDLASGIGL-------PEAVGH 62

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           Q ++         +Q+ G+L++ALA     L  R   + ++  L +       ++ +L  
Sbjct: 63  QALAPILFQQLQLAQVHGDLAKALAVAGDYLGLRVRNRQRIGQLLIYPLVLLGMLVTLQV 122

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            V   V        + L++      L+ +        ++ +
Sbjct: 123 VVVFGVLPALALPQSHLVHT----QLMTMGGGLAAGLLIWL 159


>gi|227356406|ref|ZP_03840794.1| type IV pilin biogenesis protein [Proteus mirabilis ATCC 29906]
 gi|227163516|gb|EEI48437.1| type IV pilin biogenesis protein [Proteus mirabilis ATCC 29906]
          Length = 399

 Score = 34.3 bits (77), Expect = 7.7,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 39/134 (29%), Gaps = 5/134 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                   I+  + +AGLP+   + +I  Q      S ++R +      ++  +S+S  +
Sbjct: 263 HQLHIIFQIMTITQQAGLPLLQGLKIITEQL---THSLYQRALTDMIAHITQGKSLSSFM 319

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R                 ++  G L      L+     +   +       +E      I 
Sbjct: 320 R--HNPLFPPICYQFISSAENSGQLQFFCQQLTHWFYHQLEERLDSVKTWLEPILMTLIA 377

Query: 134 GSLPFCVSTLVYFT 147
                 +  +    
Sbjct: 378 LITGTLIIAMYLPV 391


>gi|194017667|ref|ZP_03056277.1| ComG operon protein 2 [Bacillus pumilus ATCC 7061]
 gi|194010567|gb|EDW20139.1| ComG operon protein 2 [Bacillus pumilus ATCC 7061]
          Length = 346

 Score = 34.3 bits (77), Expect = 7.7,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 48/139 (34%), Gaps = 7/139 (5%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
              L  + + ++AG  + +A+ ++  Q S+  + +    I+    G      + R+    
Sbjct: 15  AECLSKLAQLIQAGYTLIEALTMLNIQLSNKQQQQLAPGIQWLLEGEPFYVVLERL---- 70

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
                      I   S+  G+L++AL   +R L  +       + +        + +  +
Sbjct: 71  ---HFQREVIAILSFSEKHGSLAKALEQSARFLEKKIKQVDTFKRILRYPIFLIFTVLIV 127

Query: 137 PFCVSTLVYFTSPGYMNVL 155
              V  ++        + +
Sbjct: 128 LILVQQMIIPQFSLLYSSM 146


>gi|296420228|ref|XP_002839677.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295635871|emb|CAZ83868.1| unnamed protein product [Tuber melanosporum]
          Length = 534

 Score = 34.3 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 20/179 (11%), Positives = 52/179 (29%), Gaps = 21/179 (11%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
               + F   L +++  +  G         +V  S   +   + R++   H    +  +I
Sbjct: 258 NAIRNSFSFFL-LLIVCMGYG---------VVKPSLGAMMK-WVRILALAHFLFGMVYAI 306

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
           + +              ++ + + L       L +L   ++D  + K  V+ L  +    
Sbjct: 307 ASLTITPDNAGPLVMLVILPLAATLTAFYIWTLNSLKLTMKDLLDRKQNVKLLMFKRLWW 366

Query: 130 AWIIGSLPFCVSTLVYFT------SPGYMNVLIND----PRGHMLLGVAAAFMLIGIMV 178
             +   +       +         SP ++            G + L       +I  + 
Sbjct: 367 VLVGSIMVIFAFFFLNSFTFTRHGSPDFVPTHWKTRWFVLDGWLNLVYLVDLSVIAYLW 425


>gi|294676508|ref|YP_003577123.1| type I restriction-modification system RcaSBIP subunit R [Rhodobacter
            capsulatus SB 1003]
 gi|294475328|gb|ADE84716.1| type I restriction-modification system RcaSBIP, R subunit
            [Rhodobacter capsulatus SB 1003]
          Length = 1135

 Score = 34.3 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 32/114 (28%)

Query: 18   NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            + LD     VR+ +    A+ ++V +  +  R E R++             I R      
Sbjct: 971  DFLDAFATFVRSNVNTIAALKIVVQRPQELTREELRQLRLELDAAGFTDSKIRRAWADAN 1030

Query: 78   LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              E++        Q+ LG  L      +   +      +               
Sbjct: 1031 NVEIAASIIGYIRQAALGDPLVPYSDRVRHAVDTILRQRQWTDVQRKWIDRIGR 1084


>gi|167772242|ref|ZP_02444295.1| hypothetical protein ANACOL_03617 [Anaerotruncus colihominis DSM
           17241]
 gi|167665345|gb|EDS09475.1| hypothetical protein ANACOL_03617 [Anaerotruncus colihominis DSM
           17241]
          Length = 292

 Score = 34.3 bits (77), Expect = 8.3,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 47/150 (31%), Gaps = 2/150 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           +  +   + P  +  I + +     V   +     Q +    S    V+       S   
Sbjct: 143 KRDEIEAELPRFVATITQELAVSRDVLSMIEH-YKQHAGETFSAELDVLTADMRSGSYEA 201

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +++R         +S     +    +    +      LS  ++  +  + K +A+ +  K
Sbjct: 202 ALTRFEARFNSPLLSDIVRGLIGVLRGDNGI-NYFQMLSHDMKQLELQRLKAKAMKIPPK 260

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
             A+ +  L   + T +       ++ L  
Sbjct: 261 IRAFSLTLLMCFLGTYLAIIIYEIIHSLGG 290


>gi|302787178|ref|XP_002975359.1| hypothetical protein SELMODRAFT_103269 [Selaginella moellendorffii]
 gi|300156933|gb|EFJ23560.1| hypothetical protein SELMODRAFT_103269 [Selaginella moellendorffii]
          Length = 786

 Score = 34.3 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 8/108 (7%), Positives = 28/108 (25%)

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
           E+  ++ ++ V           +      +      + +V       +        L   
Sbjct: 225 ELWKWTVMVLVALSGRLLSGWIIHVAVFFIERNFLWRKRVLYFVYGLRKGVQTALWLTLA 284

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           +   +    P       N+     +  V    ++   + +  ++   V
Sbjct: 285 LVAWLLLFDPKVERSTKNNRALLYVTKVLICLLIAAFVWLAKLLFVKV 332


>gi|260654170|ref|ZP_05859660.1| type II secretion pathway protein XcpS [Jonquetella anthropi E3_33
           E1]
 gi|260631155|gb|EEX49349.1| type II secretion pathway protein XcpS [Jonquetella anthropi E3_33
           E1]
          Length = 342

 Score = 34.3 bits (77), Expect = 8.5,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 57/174 (32%), Gaps = 22/174 (12%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L  + + +  G+PV  A+  +         +   R+  +   G S ++++ R       
Sbjct: 15  FLQALSQFLSCGVPVDQALKDL-----PVGGALASRLRRSLLSGFSFADALER------E 63

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
            E    +  +    +  G L +AL   + +   R+ +++   + S+       + G +  
Sbjct: 64  NEFDPVTVALVRAGEAHGALVQALNQAADVRCRRQKLRSAAVSASVYPAFVLALAGVVTA 123

Query: 139 CVSTLVYFTS-----------PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            +  +V               P     L++      +       +L  + ++  
Sbjct: 124 VMGGVVLPRFRQAFERLGVQLPQATRFLMSVGPAFAVALPVVILLLGTVALLAR 177


>gi|229135064|ref|ZP_04263869.1| ComG operon protein 2 [Bacillus cereus BDRD-ST196]
 gi|228648449|gb|EEL04479.1| ComG operon protein 2 [Bacillus cereus BDRD-ST196]
          Length = 315

 Score = 34.3 bits (77), Expect = 8.5,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 42/128 (32%), Gaps = 7/128 (5%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
            +   +  GL V +A+ +++ Q      + E  R+      G  L   I +         
Sbjct: 188 QLSGLLHGGLSVHEALTIMMKQKYHPFFQYEADRIERQLIAGEPLQSIIDKSG------Y 241

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
                + I    Q  GNL+  L + S ++ ++   K K     ++      +   +    
Sbjct: 242 YEKELSYIITHGQANGNLANELGDYSELIIEKVEQKIKRMLFMIQPILFTCLGVIVILMY 301

Query: 141 STLVYFTS 148
             ++    
Sbjct: 302 LAMIMPMF 309


>gi|328475064|gb|EGF45852.1| comG operon protein 2 (ComGB) [Listeria monocytogenes 220]
          Length = 314

 Score = 34.3 bits (77), Expect = 8.5,   Method: Composition-based stats.
 Identities = 14/128 (10%), Positives = 41/128 (32%), Gaps = 5/128 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +   +++GL ++  + +   + S        R      +  +L + +S       +  
Sbjct: 186 RELGYLLKSGLSITHIMHLFAQEESPAFFQAIAR-----QILPTLEQGLSLTKALEKMPI 240

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
                  I++  +  GNL+E       +   +   K +     ++      I   +    
Sbjct: 241 FERELYYIAIHGEKNGNLAEEFLFYYNLCHQKSLQKTEKLFSFIQPIVFIVIGILIVSIY 300

Query: 141 STLVYFTS 148
            +++Y   
Sbjct: 301 LSILYPMF 308


>gi|253998736|ref|YP_003050799.1| type II secretion system protein [Methylovorus sp. SIP3-4]
 gi|253985415|gb|ACT50272.1| type II secretion system protein [Methylovorus sp. SIP3-4]
          Length = 395

 Score = 34.3 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 45/145 (31%), Gaps = 8/145 (5%)

Query: 35  DAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ 93
           +A+  +   +    VR   R  +   + G  LS+++       P              S+
Sbjct: 78  EAMEALSEKEQRPQVRDTLRATLRLLNEGQPLSQAMEASPEAFPP-----LYVAALRASE 132

Query: 94  LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153
             G + EAL          + +K KV + S+       + G +   +   V         
Sbjct: 133 KTGGMPEALQRYIAYQSQVEEVKKKVISASIYPVLLIVVGGLVVMFLMGFVVPRFAHIYE 192

Query: 154 VLINDPRG--HMLLGVAAAFMLIGI 176
            +  D      +LL +       G+
Sbjct: 193 DMNGDMPFMSQLLLALGGFIETHGM 217


>gi|306818993|ref|ZP_07452710.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|304648186|gb|EFM45494.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
          Length = 1050

 Score = 34.3 bits (77), Expect = 8.7,   Method: Composition-based stats.
 Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV-MRLMINF 185
           P  +  +++   P    + +    G  +L +      + +   MR + N 
Sbjct: 49  PGSLRWMLFMFLPLVFMLGLGVFIGWRVLVIFVLLAGVALWWFMRRLSNI 98


>gi|297537917|ref|YP_003673686.1| Type II secretion system F domain-containing protein [Methylotenera
           sp. 301]
 gi|297257264|gb|ADI29109.1| Type II secretion system F domain protein [Methylotenera sp. 301]
          Length = 393

 Score = 34.3 bits (77), Expect = 8.7,   Method: Composition-based stats.
 Identities = 14/144 (9%), Positives = 33/144 (22%), Gaps = 6/144 (4%)

Query: 34  SDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ 93
            +A+  +  +            +                                   S+
Sbjct: 75  VEAIETLAEKEQGNQIKHTLDALLQALYQGQ----TFSSALEQQPLIFPVLYIATVRASE 130

Query: 94  LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153
             G+L EAL+      +    ++ K+ + S+       + G +   +   V         
Sbjct: 131 KTGDLPEALSRYVSYEQQLGLVRKKIVSSSIYPILLMAVGGLVILFLLGFVVPKFSRIYE 190

Query: 154 VLINDPRG--HMLLGVAAAFMLIG 175
               +      +LL         G
Sbjct: 191 GTGGNLPFLSQVLLAWGLFLESHG 214


>gi|258507983|ref|YP_003170734.1| type II secretory pathway/competence component [Lactobacillus
           rhamnosus GG]
 gi|257147910|emb|CAR86883.1| Type II secretory pathway/competence component [Lactobacillus
           rhamnosus GG]
 gi|259649310|dbj|BAI41472.1| type II secretion system protein [Lactobacillus rhamnosus GG]
          Length = 317

 Score = 34.3 bits (77), Expect = 8.7,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 54/159 (33%), Gaps = 8/159 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
                   + AG  +SD  A +         + ++ +      G++ S++++R       
Sbjct: 11  FCRQSAALMTAGFNLSDVFAYLQVSLPKH-AAIWQGIENELANGMAFSDAVAR------- 62

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           Q+++         +Q+ G+L++AL   +  L  R   + ++  L +       ++  L  
Sbjct: 63  QDLAPILFQQLQLAQVHGDLAKALTIAADYLHLRVRNRQRIVQLLVYPCLLLAMLVVLQI 122

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
            V   V        + L+      + +      +     
Sbjct: 123 VVVFGVLPALSLPQSNLVALQLIGLGVVTVIGLLGYCYW 161


>gi|254389724|ref|ZP_05004949.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
 gi|197703436|gb|EDY49248.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
          Length = 184

 Score = 34.3 bits (77), Expect = 8.7,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 48/154 (31%), Gaps = 1/154 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQ 59
           +K    +    F       L ++     A    + A+          V       +   +
Sbjct: 30  LKQQAVEAKEDFRHAVKAYLRLVQLERAADAAPTQALKKAAEVGEGWVFAKIRDTITRAE 89

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G+S  E + R+   + + E+   + +I++  + G  + + L   ++ L       AK 
Sbjct: 90  LEGISPWEGLKRLSIELDVPELGAPADIIAIAGEEGAAVGDTLGAQAKSLSGALVTSAKA 149

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153
           QA     K    +   +      + Y      M 
Sbjct: 150 QANMASEKMVMPVAMLVLIMTVYIGYPALSRIMA 183


>gi|296109771|ref|YP_003616720.1| Type II secretion system F domain protein [Methanocaldococcus
           infernus ME]
 gi|295434585|gb|ADG13756.1| Type II secretion system F domain protein [Methanocaldococcus
           infernus ME]
          Length = 557

 Score = 34.3 bits (77), Expect = 8.8,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 60/159 (37%), Gaps = 2/159 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRA-GLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           + H+ + +  +    FP  L  +  SV A G  + +++  +      P+  + +R+ +  
Sbjct: 315 ISHIEESKVKRKEFVFPEFLRSLGSSVAAKGGGLKESLKYLTLHDFGPLTEDLKRLYKRI 374

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            L +  +++            +  FS + +  + LGG+   A   +S+  +    ++ K 
Sbjct: 375 ALSIDSNKAWRYFGFESCSYLIQLFSDMYARCTYLGGDPKIASEIISKNFKRIIQLR-KA 433

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158
           +  S++              ++     +    ++ + N 
Sbjct: 434 KYQSVQQFVGIVYGLGGGLALALFSSLSVSKAISDIYNS 472


>gi|120555398|ref|YP_959749.1| hypothetical protein Maqu_2487 [Marinobacter aquaeolei VT8]
 gi|120325247|gb|ABM19562.1| conserved hypothetical protein [Marinobacter aquaeolei VT8]
          Length = 815

 Score = 34.3 bits (77), Expect = 8.8,   Method: Composition-based stats.
 Identities = 9/71 (12%), Positives = 23/71 (32%), Gaps = 1/71 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            ++R           L+ +  +V +GLP   A+  +     +      R     +     
Sbjct: 195 KQQRQETLEL-LQQTLNQLKAAVPSGLPSESALDALQKTQENRWLEATRDTQVEKQEQKQ 253

Query: 65  LSESISRMVRY 75
             +++  +  Y
Sbjct: 254 YEQAMLALRNY 264


>gi|307700356|ref|ZP_07637396.1| FtsK/SpoIIIE family protein [Mobiluncus mulieris FB024-16]
 gi|307614567|gb|EFN93796.1| FtsK/SpoIIIE family protein [Mobiluncus mulieris FB024-16]
          Length = 1124

 Score = 34.3 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV-MRLMINF 185
           P  +  +++   P    + +    G  +L +      + +   MR + N 
Sbjct: 123 PGSLRWMLFMFLPLVFMLGLGVFIGWRVLVIFVLLAGVALWWFMRRLSNI 172


>gi|170740265|ref|YP_001768920.1| type II secretion system protein [Methylobacterium sp. 4-46]
 gi|168194539|gb|ACA16486.1| type II secretion system protein [Methylobacterium sp. 4-46]
          Length = 403

 Score = 34.3 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 40/130 (30%), Gaps = 7/130 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   V  G+ +S A+ +I G        +E  RVI     G  LSE++ +      
Sbjct: 272 FCRTLAILVGGGVDISTALRLIRGVVRLPGAGAEIDRVIADVRQGQRLSEALGQ------ 325

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G L ++   ++     +           +       +   + 
Sbjct: 326 RPLFPRHVVQMLRVGEEAGELPDSAERVAAFYEVKLESALGRLIAIVGPAVMVLVSVLIA 385

Query: 138 FCVSTLVYFT 147
           + + +++   
Sbjct: 386 WLIISVMTAL 395


>gi|320094936|ref|ZP_08026662.1| hypothetical protein HMPREF9005_1274 [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319978135|gb|EFW09752.1| hypothetical protein HMPREF9005_1274 [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 165

 Score = 33.9 bits (76), Expect = 9.0,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 44/158 (27%), Gaps = 12/158 (7%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            ++ R     +    A D+++  +R G  +  A+A + G           R+     LG 
Sbjct: 19  RLRSRDGAVDEAI--ACDLVLAGLRCGASIPQALAALGG---AVGSDGLVRISRELRLGA 73

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
             + +                   +      G +    L   +   R  +   AK  A  
Sbjct: 74  GWAAAWDPAP-----PGTELLREGLEAAWLQGVSPEAQLRRAAAQTRRHRISDAKKAAEE 128

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           +     A +   L      L     P  +++      G
Sbjct: 129 LGISLVAPLGALLLPAFVLLG--LVPIVIHMFAGILGG 164


>gi|302762026|ref|XP_002964435.1| hypothetical protein SELMODRAFT_81632 [Selaginella moellendorffii]
 gi|300168164|gb|EFJ34768.1| hypothetical protein SELMODRAFT_81632 [Selaginella moellendorffii]
          Length = 786

 Score = 33.9 bits (76), Expect = 9.0,   Method: Composition-based stats.
 Identities = 8/108 (7%), Positives = 28/108 (25%)

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
           E+  ++ ++ V           +      +      + +V       +        L   
Sbjct: 225 ELWKWTVMVLVALSGRLLSGWIIHVAVFFIERNFLWRKRVLYFVYGLRKGVQTALWLTLA 284

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           +   +    P       N+     +  V    ++   + +  ++   V
Sbjct: 285 LVAWLLLFDPKVERSTKNNRALLYVTKVLICLLIAAFVWLAKLLFVKV 332


>gi|313127312|ref|YP_004037582.1| archaeal flagella assembly protein j [Halogeometricum borinquense
           DSM 11551]
 gi|312293677|gb|ADQ68137.1| archaeal flagella assembly protein J [Halogeometricum borinquense
           DSM 11551]
          Length = 636

 Score = 33.9 bits (76), Expect = 9.2,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 61/188 (32%), Gaps = 12/188 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ 59
           +  +   R A      P A+  +             +  +    +        R+ + T 
Sbjct: 137 LGWIAAARRANIDRMLPGAVRYLHVLASGSDGRRTMLRRVADTDAYGETAVSLRKALNTA 196

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTV-ISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            +  +++E + R+ R  P +       +     +  G +       +   +   +  +A+
Sbjct: 197 AMTGNINEGLRRVARDTPAENTLAPFLLKFREHADQGSDALRNYLRMESRMLGHQQDRAR 256

Query: 119 VQAL-----SMEAKASAWIIGSLPFCVSTLVYFTSPGY-----MNVLINDPRGHMLLGVA 168
            +A        E      ++ +L   + T++   +PG        V     RG ++ G  
Sbjct: 257 RRAEGFLELLAEIFIVLLVLPALLVIILTVMSVIAPGLSTTVPTPVGTTTLRGVIVYGSG 316

Query: 169 AAFMLIGI 176
           A  + +G+
Sbjct: 317 AFIIAVGL 324


>gi|85712517|ref|ZP_01043565.1| Type II secretory pathway, PulF-like [Idiomarina baltica OS145]
 gi|85693651|gb|EAQ31601.1| Type II secretory pathway, PulF-like [Idiomarina baltica OS145]
          Length = 348

 Score = 33.9 bits (76), Expect = 9.2,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 62/149 (41%), Gaps = 7/149 (4%)

Query: 7   KRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLS 64
           +R  +F    +  AL+ + + +  GLP++ A+ V+  Q+    ++  ++ +  +   G+S
Sbjct: 5   RRYNQFSTTQWYLALNRLEQLITGGLPLALALGVVAKQTHQPALKRHYQYLQHSVQAGIS 64

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L+E++S   R          +      ++  G L   + +L    + ++++ A V+    
Sbjct: 65  LAEALSIEKRR-----ALKAAQAGIAVAEQTGQLPLVMQSLVASWKRQRHISALVKNALR 119

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMN 153
              A  ++   +     T V  T     +
Sbjct: 120 YPVALLFMALIIITVFVTWVLPTIQQLFD 148


>gi|91977297|ref|YP_569956.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisB5]
 gi|91683753|gb|ABE40055.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisB5]
          Length = 633

 Score = 33.9 bits (76), Expect = 9.3,   Method: Composition-based stats.
 Identities = 13/136 (9%), Positives = 40/136 (29%), Gaps = 7/136 (5%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +++ ++R              I  ++ AGL  S+ + ++  Q  +  R+     +    +
Sbjct: 153 RYIAEQRKVALRRQ-------IAGTITAGLAPSNTMLLVASQFQNEQRAIDYLKLTDAQV 205

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G     S   +  +    +  F +      + +                D + +  + + 
Sbjct: 206 GTIEPPSAEALAAFYEDHKAQFRAPEYRKVAFVALTPESIAKWTDVSDADARKLFDERKD 265

Query: 122 LSMEAKASAWIIGSLP 137
                +    +    P
Sbjct: 266 KLSTPEKRQVLQIVFP 281


>gi|152978291|ref|YP_001343920.1| type II secretion system protein [Actinobacillus succinogenes 130Z]
 gi|150840014|gb|ABR73985.1| type II secretion system protein [Actinobacillus succinogenes 130Z]
          Length = 403

 Score = 33.9 bits (76), Expect = 9.3,   Method: Composition-based stats.
 Identities = 14/124 (11%), Positives = 52/124 (41%), Gaps = 6/124 (4%)

Query: 31  LPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS 89
           +P+ +++ +++   ++ P+    ++++     GL+ S++++R  +++  QE       + 
Sbjct: 74  VPLKNSLHILLSNCANIPLYQWLQQLLRDIESGLAFSQTLNRQQKFLTHQE-----CQLI 128

Query: 90  VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149
              ++ G L++    ++   +    ++ K+Q + +       I   L   +   +     
Sbjct: 129 RVGEMTGQLAKVCQQIALSKQQGLALQRKIQKILLYPMMILIISLILTALLLIFIVPQFA 188

Query: 150 GYMN 153
               
Sbjct: 189 EMYG 192



 Score = 33.9 bits (76), Expect = 9.5,   Method: Composition-based stats.
 Identities = 15/134 (11%), Positives = 40/134 (29%), Gaps = 1/134 (0%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAV-IVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                  +   + AG+P+  A+   +    SD V      +I+     L   +       
Sbjct: 263 LVRFCRSLHLMLHAGVPLHQALLSFLPTDKSDTVIRYDVALIQEVQFMLQGIQKGFAFSA 322

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            +        +  +    +  G L   L +++   + + + K  + +  +E      I  
Sbjct: 323 CVGSALFPMQAQQMLQVGERAGKLPLMLQHIADNYQQQLDHKIDLLSQMLEPFLMLIIGS 382

Query: 135 SLPFCVSTLVYFTS 148
            +   +  +     
Sbjct: 383 IIGLIMLGMYLPIF 396


>gi|326445374|ref|ZP_08220108.1| putative integral membrane protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 299

 Score = 33.9 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 48/154 (31%), Gaps = 1/154 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQ 59
           +K    +    F       L ++     A    + A+          V       +   +
Sbjct: 145 LKQQAVEAKEDFRHAVKAYLRLVQLERAADAAPTQALKKAAEVGEGWVFAKIRDTITRAE 204

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G+S  E + R+   + + E+   + +I++  + G  + + L   ++ L       AK 
Sbjct: 205 LEGISPWEGLKRLSIELDVPELGAPADIIAIAGEEGAAVGDTLGAQAKSLSGALVTSAKA 264

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153
           QA     K    +   +      + Y      M 
Sbjct: 265 QANMASEKMVMPVAMLVLIMTVYIGYPALSRIMA 298


>gi|30022321|ref|NP_833952.1| ComG operon protein 2 [Bacillus cereus ATCC 14579]
 gi|29897878|gb|AAP11153.1| ComG operon protein 2 [Bacillus cereus ATCC 14579]
          Length = 345

 Score = 33.9 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 60/174 (34%), Gaps = 20/174 (11%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L  +   +  G  +  A+  +  Q     + + +R+IE    G SL +S  ++  +  +
Sbjct: 16  LLKRLGELLEKGYSLLQALEFLQFQLPVEKKVQLQRMIEGLKDGKSLHDSFHQLKFHQDM 75

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
               F++       +  G++S AL   S +L  +   +  +  +        + +  + F
Sbjct: 76  LSYLFYA-------EQHGDISFALQQGSALLYKKDKYRRDMMKIMQYPMFLMFFLLIMLF 128

Query: 139 CVSTLVYFTSPGYMNVLINDPRGH-------------MLLGVAAAFMLIGIMVM 179
               ++        +   ++                 ++L      ++ GI+ M
Sbjct: 129 IFKLILLPQVEMVYSSFGSNTPLLTEQILSAIKLLPYIILTAILTVIIGGILYM 182


>gi|325916236|ref|ZP_08178517.1| type II secretory pathway, component PulF [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325537530|gb|EGD09245.1| type II secretory pathway, component PulF [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 154

 Score = 33.9 bits (76), Expect = 9.5,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
                  + +AG+P+ +A++++ G + + V       +              + V   P 
Sbjct: 23  FARTTAVTFKAGVPLVEALSIVAGATGNSVYEAAVLRMRDDVSVGYPVNVAMKQVNLFPH 82

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    ++   +  G L   L  ++       N      +  +E     +I   +  
Sbjct: 83  -----MVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVGG 137

Query: 139 CVSTLVYFTS 148
            V  +     
Sbjct: 138 MVIGMYLPIF 147


>gi|262044850|ref|ZP_06017893.1| protein transporter HofC [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037819|gb|EEW39047.1| protein transporter HofC [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 247

 Score = 33.9 bits (76), Expect = 9.5,   Method: Composition-based stats.
 Identities = 10/90 (11%), Positives = 26/90 (28%), Gaps = 4/90 (4%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
             +  +   ++A LP+++ ++++  Q S          +  +                  
Sbjct: 62  ETIRQLASLLQASLPLAEGLSLLAQQQSHAQWQALLEALGRELAQG----VAFSAALAQW 117

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSR 107
            Q        +    +L G L      L+ 
Sbjct: 118 PQAFPPLYLAMISTGELTGKLDICCLQLAN 147


>gi|229013461|ref|ZP_04170598.1| ComG operon protein 2 [Bacillus mycoides DSM 2048]
 gi|228747873|gb|EEL97739.1| ComG operon protein 2 [Bacillus mycoides DSM 2048]
          Length = 294

 Score = 33.9 bits (76), Expect = 9.5,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 42/128 (32%), Gaps = 7/128 (5%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
            +   +  GL V +A+ +++ Q      + E  R+      G  L   I +         
Sbjct: 167 QLSGLLHGGLSVHEALTIMMKQKYHPFFQYEADRIERQLIAGEPLQSIIDKSG------Y 220

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
                + I    Q  GNL+  L + S ++ ++   K K     ++      +   +    
Sbjct: 221 YEKELSYIITHGQANGNLANELGDYSELIIEKVEQKIKRMLFVIQPILFTCLGVIVILMY 280

Query: 141 STLVYFTS 148
             ++    
Sbjct: 281 LAMIMPMF 288


>gi|229098713|ref|ZP_04229653.1| ComG operon protein 2 [Bacillus cereus Rock3-29]
 gi|229117738|ref|ZP_04247107.1| ComG operon protein 2 [Bacillus cereus Rock1-3]
 gi|228665715|gb|EEL21188.1| ComG operon protein 2 [Bacillus cereus Rock1-3]
 gi|228684792|gb|EEL38730.1| ComG operon protein 2 [Bacillus cereus Rock3-29]
          Length = 329

 Score = 33.9 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 7/128 (5%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQE 80
            +   +  GL V +A+ +++ Q  +     E  R+      G SL   I++         
Sbjct: 202 QLSGLLYGGLSVLEALTIMMEQKYNRFFQYEAARIERQLIAGESLQSIIAKSG------Y 255

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
                + I    Q  GNL+  L + S ++ ++   K K   + ++      I G +    
Sbjct: 256 YEKELSYIIRHGQANGNLAVELEDYSDLVIEKMEQKMKRMLVIIQPILFTCIGGIVVLMY 315

Query: 141 STLVYFTS 148
             ++    
Sbjct: 316 LAMIMPMF 323


>gi|239631876|ref|ZP_04674907.1| type II secretory pathway/competence [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|239526341|gb|EEQ65342.1| type II secretory pathway/competence [Lactobacillus paracasei
           subsp. paracasei 8700:2]
          Length = 307

 Score = 33.9 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 53/161 (32%), Gaps = 12/161 (7%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
                   + AG  + D  A +   S    R  + R+      G+ L          +  
Sbjct: 11  FCRQSAALIAAGFSLPDVFAYL-RVSLPKYRPIWERIETDLASGIGL-------PEAVGH 62

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           Q ++         +Q+ G+L++ALA     L  R   + ++  L +       ++ +L  
Sbjct: 63  QALAPILFQQLQLAQVHGDLAKALAVAGDYLGLRVRNRQRIGQLLIYPLVLLGMLVTLQV 122

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            V   V        + L++      L+ +        ++ +
Sbjct: 123 VVVFGVLPALALPQSHLVHT----QLMTMGGGLAAGLLIWL 159


>gi|162147676|ref|YP_001602137.1| cobalamin biosynthesis protein cobT [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209542301|ref|YP_002274530.1| cobalt chelatase, pCobT subunit [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786253|emb|CAP55835.1| putative cobalamin biosynthesis protein cobT [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209529978|gb|ACI49915.1| cobalt chelatase, pCobT subunit [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 633

 Score = 33.9 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 9   TAKFLDDFPN--ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
            A+  D  P   AL ++ R    G PV +++  +  Q    +     R ++         
Sbjct: 147 RAQARDQIPVQVALSLLARERMTGEPVPESMRAMAEQWRAHLGPSALRALDDMAAHQDDQ 206

Query: 67  ESISRMVRY 75
            + SR  + 
Sbjct: 207 MAFSRAAKR 215


>gi|317128387|ref|YP_004094669.1| type II secretion system F domain [Bacillus cellulosilyticus DSM
           2522]
 gi|315473335|gb|ADU29938.1| Type II secretion system F domain [Bacillus cellulosilyticus DSM
           2522]
          Length = 340

 Score = 33.9 bits (76), Expect = 9.8,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 36/130 (27%), Gaps = 5/130 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            +  +   ++ G  + +A+ VIV  S            E   +   L +  S        
Sbjct: 210 FVTQLSPLLKNGFSLYNALKVIVESSHMKFLQI-----EASAMIGKLLDGYSLQQIIKER 264

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                  T +    +  G L E        + +++  K        +    + I   +  
Sbjct: 265 GIYDERLTAVIYLGESKGKLGEEFERFGNFIYNKQQEKIYKVISVAQPVIVSVIGLIVLV 324

Query: 139 CVSTLVYFTS 148
              +++    
Sbjct: 325 LFLSIMVPIF 334


>gi|255316491|ref|ZP_05358074.1| hypothetical protein CdifQCD-7_19182 [Clostridium difficile
           QCD-76w55]
          Length = 298

 Score = 33.9 bits (76), Expect = 9.8,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 70/159 (44%), Gaps = 10/159 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+ +K++  K L  FP+ ++++   + + + +  A+      S   V +E+ ++ +   
Sbjct: 146 LKNAVKEKKLKILSGFPDFINVVQGFLVSDMTLVKAI----ESSIPYVGTEWSKLAQEFV 201

Query: 61  LGL---SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
           +     S  + I  +   + + EV    ++I + S+ G N+ E  +N ++ + D   +  
Sbjct: 202 IDSKTNSQEKCIEIIYEKIDIFEVRELWSLIKLNSEQGINIKECFSNQAKKITD---LNM 258

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
           ++    +  +     +   P  +  L+  + P    +LI
Sbjct: 259 ELIHKKINTRQIMATLVQAPLLLLLLIAISLPMVSQMLI 297


>gi|47567800|ref|ZP_00238508.1| competence protein ComGB, putative [Bacillus cereus G9241]
 gi|47555477|gb|EAL13820.1| competence protein ComGB, putative [Bacillus cereus G9241]
          Length = 343

 Score = 33.9 bits (76), Expect = 9.8,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 44/132 (33%), Gaps = 7/132 (5%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
                +   +  GL V +A+ +++ Q      + E  R+      G  L   I++     
Sbjct: 212 YFATQLSGLIHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIAGEPLQSIIAKSG--- 268

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
                    + +    Q  GNL+  L + S ++ ++   K     + ++      I G +
Sbjct: 269 ---YYEEELSYVITHGQANGNLAIELGDYSDLIMEKMEQKINRMLVIIQPILFTCIGGIV 325

Query: 137 PFCVSTLVYFTS 148
                 ++    
Sbjct: 326 VLMYLAMIMPMF 337


>gi|303244718|ref|ZP_07331049.1| Type II secretion system F domain protein [Methanothermococcus
           okinawensis IH1]
 gi|302484932|gb|EFL47865.1| Type II secretion system F domain protein [Methanothermococcus
           okinawensis IH1]
          Length = 384

 Score = 33.9 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 54/176 (30%), Gaps = 3/176 (1%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIET-QHLGLSLS 66
             +       ++  ++ S+ +G+ + +A+  I           EF+ +I      G S  
Sbjct: 207 RGEIKIQILISILHMISSLNSGMSLQEAMKNISENPEYGIASFEFKNIIYDINRGGYSFK 266

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ES+ R      +  +      + + +   G     L NL   +      K       +  
Sbjct: 267 ESLERAKIRTKIPLMKKLYAQLIISAN-KGGAQLLLKNLYNEVIRESISKIDSSKFQISN 325

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
             +      +    + ++  +  G M         ++LL   A    I   +   M
Sbjct: 326 LGNLVFGVGMILPFAGMLLSSLQGGMGFSGIINTTNLLLTKIAPMATIVFTIFIKM 381


>gi|229019463|ref|ZP_04176284.1| ComG operon protein 2 [Bacillus cereus AH1273]
 gi|229025706|ref|ZP_04182110.1| ComG operon protein 2 [Bacillus cereus AH1272]
 gi|228735581|gb|EEL86172.1| ComG operon protein 2 [Bacillus cereus AH1272]
 gi|228741818|gb|EEL91997.1| ComG operon protein 2 [Bacillus cereus AH1273]
          Length = 315

 Score = 33.9 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 42/132 (31%), Gaps = 7/132 (5%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
                +   +  GL V +A+ +++ Q      + E  R+      G  L   I +     
Sbjct: 184 YFSAQLSGLLHGGLSVHEALTIMMKQKYHPFFQYEAARIERQLIAGEPLQSIIDKSG--- 240

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
                    + I    Q  GNL+  L + S ++ ++   K K     ++      +   +
Sbjct: 241 ---CYEKELSYIITHGQANGNLANELGDYSELIIEKVEQKIKRMLFVIQPILFTCLGLIV 297

Query: 137 PFCVSTLVYFTS 148
                 ++    
Sbjct: 298 ILMYLAMIMPMF 309


>gi|72160530|ref|YP_288187.1| integral membrane protein [Thermobifida fusca YX]
 gi|71914262|gb|AAZ54164.1| putative integral membrane protein [Thermobifida fusca YX]
          Length = 246

 Score = 33.9 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 45/128 (35%), Gaps = 4/128 (3%)

Query: 30  GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS 89
           G   +D VA +      P+ +    V     LG   + +   +       E++     ++
Sbjct: 120 GAHPTDMVAAVAQALGGPLGTALDGVARQLRLGADPARAWQSL---HAPAELAAVGRALA 176

Query: 90  VQSQLGGNLSEALANLSRILRD-RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
             S  G  L++ + + +   R   +    ++   +  A      +  LP  V   V   +
Sbjct: 177 RASHTGAPLADVVESHAADCRRTARATALELAHRTGVAVVIPLGVCFLPAFVLLGVVPLA 236

Query: 149 PGYMNVLI 156
            G ++ L+
Sbjct: 237 AGLVSGLV 244


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.310    0.129    0.294 

Lambda     K      H
   0.267   0.0397    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,021,731,102
Number of Sequences: 14124377
Number of extensions: 28397022
Number of successful extensions: 336700
Number of sequences better than 10.0: 5292
Number of HSP's better than 10.0 without gapping: 3591
Number of HSP's successfully gapped in prelim test: 1701
Number of HSP's that attempted gapping in prelim test: 328744
Number of HSP's gapped (non-prelim): 7416
length of query: 187
length of database: 4,842,793,630
effective HSP length: 131
effective length of query: 56
effective length of database: 2,992,500,243
effective search space: 167580013608
effective search space used: 167580013608
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.9 bits)
S2: 77 (34.3 bits)