BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780722|ref|YP_003065135.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] (187 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|13474664|ref|NP_106233.1| hypothetical protein mlr5603 [Mesorhizobium loti MAFF303099] gi|14025419|dbj|BAB52019.1| mlr5603 [Mesorhizobium loti MAFF303099] Length = 337 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 108/187 (57%), Positives = 144/187 (77%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R FL++FPNALDIIVR+V++GLP++DAV +I +S +PV++EFRR++++Q Sbjct: 151 VSFRRARRVKAFLNEFPNALDIIVRAVKSGLPLNDAVRLIANESPEPVKAEFRRIVDSQQ 210 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+S+ ++ RM MP E SFF VI +QSQ GGNLSEAL NLSR+LRDRK MKAKVQ Sbjct: 211 MGISIPDATLRMPETMPCTEASFFGIVIQIQSQAGGNLSEALGNLSRVLRDRKKMKAKVQ 270 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASA IIG+LPF V+ LVY +SP Y+ L N G+++LG AA +M IGI+VMR Sbjct: 271 ALSMEAKASAAIIGALPFIVAFLVYLSSPDYLMPLFNTSVGNLILGCAAVWMSIGILVMR 330 Query: 181 LMINFDV 187 M+NF+V Sbjct: 331 KMMNFEV 337 >gi|260461945|ref|ZP_05810190.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] gi|259032192|gb|EEW33458.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] Length = 337 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 107/187 (57%), Positives = 144/187 (77%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R FL++FPNALDIIVR+V++GLP++DAV +I ++ +PV++EFRR++++Q Sbjct: 151 VSFRRSRRVKAFLNEFPNALDIIVRAVKSGLPLNDAVRLIANEAPEPVKTEFRRIVDSQQ 210 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GLS+ ++ RM MP E SFF VI +QSQ GGNLSEAL NLSR+LRDRK MKAKVQ Sbjct: 211 MGLSIPDATLRMPETMPCTEASFFGIVIQIQSQAGGNLSEALGNLSRVLRDRKKMKAKVQ 270 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASA IIG+LPF V+ LVY +SP Y+ L N G+++LG +A +M IGI+VMR Sbjct: 271 ALSMEAKASAAIIGALPFIVAFLVYLSSPSYLMPLFNTSVGNLILGCSAVWMSIGILVMR 330 Query: 181 LMINFDV 187 M+NF+V Sbjct: 331 KMMNFEV 337 >gi|302391032|ref|YP_003826852.1| type II secretion system F domain protein [Acetohalobium arabaticum DSM 5501] gi|302203109|gb|ADL11787.1| Type II secretion system F domain protein [Acetohalobium arabaticum DSM 5501] Length = 327 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 105/187 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ KKR KF + ++L II S++AG A+ ++ + P+ E RV++ + Sbjct: 141 LKYSQKKRLDKFNEQINDSLTIISNSLKAGYSFFQALEMVAKEMPPPISEEITRVLKEMN 200 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S ++++ + + ++ T + +Q Q+GGNLSE L N+S +R+R +K ++Q Sbjct: 201 LGASPQDALTALTDRVESDDLELVVTAVLIQRQVGGNLSEILDNISDTIRERIKIKGEIQ 260 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + + S IIG LP + +++ SP YM L P G ++GV ++G ++++ Sbjct: 261 TLTAQGRMSGLIIGLLPVGLGGMLFLISPDYMAPLFGHPLGQTMIGVGIISQILGAVLIK 320 Query: 181 LMINFDV 187 +I+ +V Sbjct: 321 KIIDIEV 327 >gi|86748903|ref|YP_485399.1| type II secretion system protein [Rhodopseudomonas palustris HaA2] gi|86571931|gb|ABD06488.1| type II secretion system protein [Rhodopseudomonas palustris HaA2] Length = 324 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 94/186 (50%), Positives = 132/186 (70%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R KF++ P+A+D+IVR ++AGLP+ D++ V+ S +P++SEF +IETQ Sbjct: 138 LGFLKKRREKKFINALPDAVDVIVRGIKAGLPLFDSLKVVAADSPEPLKSEFNAIIETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ +R+ MPL E +FF VIS+Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPLGEACARLYDRMPLPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY ++P Y+ +L P G ++L +M GI+VM+ Sbjct: 258 AMSMEAKASAAIIGSLPPIVMLLVYLSTPDYIALLWTHPTGRLMLAGCVVWMSAGILVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|115525753|ref|YP_782664.1| type II secretion system protein [Rhodopseudomonas palustris BisA53] gi|115519700|gb|ABJ07684.1| type II secretion system protein [Rhodopseudomonas palustris BisA53] Length = 324 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 92/186 (49%), Positives = 129/186 (69%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R FL P+A+D+IVR ++AGLP+ D++ V+ + +P+R+EF +++TQ Sbjct: 138 LSFLKKRRERNFLKALPDAVDVIVRGIKAGLPLYDSIKVVAADAPEPLRTEFLTILDTQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ R+ MPL E +FF VI++Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPLGEACGRLYERMPLPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKRMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY T+P Y+ +L P G M+L +M IG+ VM+ Sbjct: 258 AMSMEAKASAGIIGSLPPIVMFLVYLTTPDYIALLWTHPTGQMMLAGCVLWMSIGVFVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|260776711|ref|ZP_05885606.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC BAA-450] gi|260607934|gb|EEX34199.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC BAA-450] Length = 322 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 63/187 (33%), Positives = 102/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I R + F P ALDI+ R ++AG PV+ A + + + P+ EF+ + Sbjct: 136 LSKKISDRLSAFEGQLPEALDIMRRMLQAGQPVTQAFSEVGEEMPAPIGVEFKNTFNLLN 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + +I +M P + FS+ + +Q + GGNLSE L +SR+LR R ++ K++ Sbjct: 196 YGYDMRMAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSRVLRARFKLQRKIK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E++ SAWI+ PF + + F +PGY+ L DPRG L+ + IG + +R Sbjct: 256 TLSAESRLSAWILVLSPFVLFLFLSFVNPGYVEPLYTDPRGMKLISGGVVSLFIGSLWIR 315 Query: 181 LMINFDV 187 +INF+V Sbjct: 316 KIINFEV 322 >gi|187927683|ref|YP_001898170.1| type II secretion system protein [Ralstonia pickettii 12J] gi|187724573|gb|ACD25738.1| type II secretion system protein [Ralstonia pickettii 12J] Length = 325 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 59/187 (31%), Positives = 111/187 (59%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR K P+A+D+I R++RAG + A+ ++ + +P+ EF E + Sbjct: 139 IASQRRKRLKKLEAQLPDAVDMIARALRAGHSFASALGMVGQEIKEPMGPEFHTTFEEIN 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+SL E+++ + + +P+ ++ +F + +Q + GGNL+E L + ++R+R + K++ Sbjct: 199 YGVSLDEALTNLAKRVPVNDLRYFVIAVLIQRESGGNLAEILDTIGNLVRERLKLYDKIR 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + SAWI+G LPFC + ++ +P +M VL DP G ++G+A M++G++ MR Sbjct: 259 VLSAEGRLSAWILGLLPFCTAGMILLVNPDFMKVLWTDPMGLKMIGLALFNMVMGLIWMR 318 Query: 181 LMINFDV 187 +I V Sbjct: 319 KIIRIRV 325 >gi|90425201|ref|YP_533571.1| type II secretion system protein [Rhodopseudomonas palustris BisB18] gi|90107215|gb|ABD89252.1| type II secretion system protein [Rhodopseudomonas palustris BisB18] Length = 324 Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 92/186 (49%), Positives = 131/186 (70%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R FL P+A+D+IVR ++AGLP+ D++ V+ + +P++SEF ++ETQ Sbjct: 138 LNFLKKRREKNFLKALPDAVDVIVRGIKAGLPLFDSLKVVAADAPEPLKSEFLAILETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ +R+ MPL E +FF VI++Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPLGEACARLYERMPLPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKRMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY ++P Y+++L P G ++L +M IGI VM+ Sbjct: 258 AMSMEAKASAGIIGSLPPIVMLLVYLSTPDYISLLWTHPTGQLMLAGCVLWMAIGIFVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 QMINFD 323 >gi|222147178|ref|YP_002548135.1| component of type IV pilus [Agrobacterium vitis S4] gi|221734168|gb|ACM35131.1| component of type IV pilus [Agrobacterium vitis S4] Length = 334 Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 113/187 (60%), Positives = 152/187 (81%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + LI++R KFL +FPNALD++VRS+++GLP++DA+ +I + +PV++EFRRV++ Q Sbjct: 148 VSFLIRRRQEKFLTEFPNALDVMVRSIKSGLPLNDALRMIAVDAQEPVKTEFRRVVDAQQ 207 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+++ E+ RM MPLQEVSFF+ VI++QSQ GGNLSEAL+NLS++LR+R+ MKAKV Sbjct: 208 LGITVPEACGRMFNSMPLQEVSFFAIVIAIQSQAGGNLSEALSNLSKVLRERRKMKAKVS 267 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASA IIG+LPF V+ LVY +SP Y+ VL DPRGHM+LG +A +M IGI VMR Sbjct: 268 ALSMEAKASAVIIGALPFIVAFLVYISSPAYIMVLFTDPRGHMILGFSAFWMSIGIFVMR 327 Query: 181 LMINFDV 187 MINFD+ Sbjct: 328 NMINFDI 334 >gi|319785604|ref|YP_004145080.1| type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171492|gb|ADV15030.1| Type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 337 Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 107/187 (57%), Positives = 143/187 (76%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R FL++FPNALDIIVR+V++GLP++DAV +I +S +PV++EFRR++++Q Sbjct: 151 VTFRRARRVKAFLNEFPNALDIIVRAVKSGLPLNDAVRLIANESPEPVKTEFRRIVDSQQ 210 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GLS+ ++ RM MP E SFF VI +QSQ GGNLSEAL NLSR+LRDRK MKAKV Sbjct: 211 MGLSIPDATLRMPETMPCTEASFFGIVIQIQSQAGGNLSEALGNLSRVLRDRKKMKAKVA 270 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASA IIG+LPF V+ LVY +SP Y+ L N G+++LG +A +M IGI+VMR Sbjct: 271 ALSMEAKASAAIIGALPFIVAFLVYLSSPAYLMPLFNTSVGNLILGCSAVWMSIGILVMR 330 Query: 181 LMINFDV 187 M+NF+V Sbjct: 331 KMMNFEV 337 >gi|315121887|ref|YP_004062376.1| pilus assembly protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495289|gb|ADR51888.1| pilus assembly protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 328 Score = 131 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 142/187 (75%), Positives = 174/187 (93%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++LIKKRTAKFL++FPNALDIIVRSVR+GLPVSDA+++IVGQSSDPVRSEFRRV+E QH Sbjct: 142 LQYLIKKRTAKFLNEFPNALDIIVRSVRSGLPVSDAISIIVGQSSDPVRSEFRRVVEAQH 201 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGLS+SES++RMVRYMPLQEVSFFSTVIS+Q+Q GGNLSEAL+NLS ILR+RK MK KVQ Sbjct: 202 LGLSVSESVARMVRYMPLQEVSFFSTVISIQAQSGGNLSEALSNLSGILRERKKMKGKVQ 261 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+MEAK+SAWIIGSLPF VS+LV+FTSPGY+++L D RGH++LG+AA M++G ++MR Sbjct: 262 ALAMEAKSSAWIIGSLPFFVSSLVHFTSPGYIDILFLDSRGHIILGIAAFLMVLGAVIMR 321 Query: 181 LMINFDV 187 MINFD+ Sbjct: 322 TMINFDM 328 >gi|148258239|ref|YP_001242824.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1] gi|146410412|gb|ABQ38918.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1] Length = 324 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 92/186 (49%), Positives = 132/186 (70%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R KFL P+A+D+IVR ++AGLP+ +++ V+ + +P+RSEF +IETQ Sbjct: 138 LNFLKKRREKKFLAALPDAVDVIVRGIKAGLPLFESIKVVAADAPEPLRSEFLAIIETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ +R+ MPL E +FF V+++Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPLGEACARLYERMPLPEANFFGIVVAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY ++P Y+++L P G ++L +M +GI VM+ Sbjct: 258 AMSMEAKASAGIIGSLPPIVMLLVYLSTPDYISLLWTHPTGQLMLVGCVVWMSMGIFVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|222084473|ref|YP_002543002.1| pilus assembly protein [Agrobacterium radiobacter K84] gi|221721921|gb|ACM25077.1| pilus assembly protein [Agrobacterium radiobacter K84] Length = 335 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 111/187 (59%), Positives = 154/187 (82%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + LIK+R KFL++FPNALD+I RS+R+GLP++DAV ++ ++ +PVR+EFRRV+ETQ Sbjct: 149 VGFLIKRRQNKFLEEFPNALDLITRSIRSGLPLNDAVRLVASEAREPVRTEFRRVVETQQ 208 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GLS++++ +RM +MPLQEV+FFS VI++Q+Q GGNLSEAL NL+++LR+RK MKAKV Sbjct: 209 VGLSMTDACARMNNHMPLQEVNFFSIVIAIQAQAGGNLSEALGNLAKVLRERKKMKAKVV 268 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASA IIG+LPF V LVY TSP YM +L DPRGH+++ +A +M G+++MR Sbjct: 269 ALSMEAKASAVIIGALPFIVMLLVYLTSPQYMMILFTDPRGHLIMLLAGIWMAFGVIIMR 328 Query: 181 LMINFDV 187 M+NFD+ Sbjct: 329 QMVNFDI 335 >gi|21673274|ref|NP_661339.1| TadB protein [Chlorobium tepidum TLS] gi|21646363|gb|AAM71681.1| tadB protein [Chlorobium tepidum TLS] Length = 305 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 65/187 (34%), Positives = 107/187 (57%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR F P ALD I RS+RAG +S A+ +I + DP+ EF+ V + + Sbjct: 119 LSRKAKKRRMAFEAKLPEALDYISRSLRAGHSLSSAIGMIGKEFPDPLGGEFKTVFDEMN 178 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ E+ + + + ++SFF + +Q + GGNL+E L L+ +R+R ++ KV+ Sbjct: 179 FGIPFKEAFAHLSNRIRSNDISFFVIALMIQHETGGNLAELLGGLATTIRERFKLRGKVR 238 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + SA ++GS+PF +T++ +P Y+ L N P+GH LL +A ML+G+ V+ Sbjct: 239 TLSSEGRISALVLGSMPFVFATIISLINPRYILPLFNTPQGHTLLYIAGGLMLVGMYVLN 298 Query: 181 LMINFDV 187 M+ V Sbjct: 299 NMVKIKV 305 >gi|84498180|ref|ZP_00996977.1| putative membrane protein [Janibacter sp. HTCC2649] gi|84381680|gb|EAP97563.1| putative membrane protein [Janibacter sp. HTCC2649] Length = 654 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 101/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ L +R KF P+ L ++ ++ +G ++ A+ + S+ P EF R + Sbjct: 468 LRMLAGRRAKKFEQMLPDILMLVATTLASGFSLTQALDAVARDSAQPAGKEFSRTLAETR 527 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G +S+++ M M + + + + I +Q +GGNL++ L + LR+R+++K +V Sbjct: 528 IGADVSDALENMSVRMDSEAMRWTTMAIRIQRDVGGNLADTLRTTAHTLRERESLKRQVN 587 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +LS E + SA+I+ LP + + +++P Y ++L G ++L + M+IG + MR Sbjct: 588 SLSAEGRLSAYILLGLPILLFVYMAWSNPAYTSLLWTRTVGILMLLGSGVSMVIGTLWMR 647 Query: 181 LMINFDV 187 +I +V Sbjct: 648 KVIQIEV 654 >gi|145219379|ref|YP_001130088.1| type II secretion system protein [Prosthecochloris vibrioformis DSM 265] gi|145205543|gb|ABP36586.1| type II secretion system protein [Chlorobium phaeovibrioides DSM 265] Length = 322 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 107/187 (57%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L +R F D P ALD I R++RAG ++ A+ ++ + DP+ EF+ V + Sbjct: 136 LLKLADRRRRAFEDKLPEALDHISRALRAGHSLAPAMGMVGQEFGDPIGYEFKIVFDEIG 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ E+I R+ + +++FF +++Q + GGNL+E L+R +R R ++ K++ Sbjct: 196 FGIPFKEAIGRLAERVQSNDLNFFVISLTIQHETGGNLTELFDGLARTIRHRIKLRGKIR 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E +AS W++GS+PF + ++ +P Y+ L P+G+ ++ + A M +G +V++ Sbjct: 256 ILSSEGRASGWVLGSMPFVLMAVLSLINPEYIAQLWTTPQGNTMMMIGAGLMSVGFVVLK 315 Query: 181 LMINFDV 187 ++ V Sbjct: 316 RIVQIKV 322 >gi|114705451|ref|ZP_01438359.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506] gi|114540236|gb|EAU43356.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506] Length = 335 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 98/187 (52%), Positives = 146/187 (78%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KKR F + FP A+D+IVR V+AGLP++D + +V DPV SEF++V+E Q Sbjct: 149 LSNRRKKRINDFSNSFPTAIDLIVRGVKAGLPLNDTLRTVVSDVPDPVSSEFQKVVEAQQ 208 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G++L ++ R+ + +PL E +FF+ VI++QSQ GGNLSEAL NLSR+LR+RK M+ K+Q Sbjct: 209 MGVTLGDACDRLYKQVPLPETNFFAIVIAIQSQAGGNLSEALGNLSRVLRERKKMRQKIQ 268 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGS+P V++++Y TSP Y+NVL++DPRG+++L +A +MLIG+++M+ Sbjct: 269 AVSMEAKASASIIGSIPVLVASMIYMTSPDYLNVLLHDPRGNIVLIASAVWMLIGVLIMK 328 Query: 181 LMINFDV 187 MINFD+ Sbjct: 329 KMINFDI 335 >gi|299132290|ref|ZP_07025485.1| Type II secretion system F domain protein [Afipia sp. 1NLS2] gi|298592427|gb|EFI52627.1| Type II secretion system F domain protein [Afipia sp. 1NLS2] Length = 323 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 97/186 (52%), Positives = 136/186 (73%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L ++R +FL+ P+A+D+IVR V+AGLP+ D++ V+V S +P+RSEFR +IETQ Sbjct: 137 LSYLKRRREKQFLEALPDAVDVIVRGVKAGLPLFDSLKVVVNDSPEPLRSEFRAIIETQS 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ R+ MPL E +FF VI +Q++ GGNLSEAL NLS++LRDRK M+AK+Q Sbjct: 197 IGMPLGEACMRLYERMPLPEANFFGIVIGIQTKSGGNLSEALGNLSKVLRDRKKMRAKIQ 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIG+LP V +VY SP Y+++L P G +L A +M GI+VM+ Sbjct: 257 AMSMEAKASAAIIGALPPVVMIIVYIMSPDYISLLWTHPTGRFMLACCAVWMTAGILVMK 316 Query: 181 LMINFD 186 MINFD Sbjct: 317 KMINFD 322 >gi|261252091|ref|ZP_05944664.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891] gi|260935482|gb|EEX91471.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891] Length = 322 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 62/187 (33%), Positives = 102/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I R A F + P ALDI+ R ++AG PV+ A + + P+ EF+ + + Sbjct: 136 LGKKISDRLAAFEEQLPEALDIMRRMLQAGQPVTQAFNEVGLEMPAPIGVEFKNMFNLLN 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + +I +M P + FS+ + +Q + GGNLSE L +S++LR R ++ K++ Sbjct: 196 YGYDMRMAIMQMAERTPTVSMLAFSSAVILQKETGGNLSENLEKVSKVLRSRFKLQRKIK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E++ SAWI+ PF + + +PGY+ L DPRG L+ + IG + +R Sbjct: 256 TLSAESRLSAWILVLSPFVLFLFLSVINPGYVEPLYTDPRGMKLVSGGVVSLFIGSLWIR 315 Query: 181 LMINFDV 187 +INF+V Sbjct: 316 KIINFEV 322 >gi|209886534|ref|YP_002290391.1| type II secretion system protein [Oligotropha carboxidovorans OM5] gi|209874730|gb|ACI94526.1| type II secretion system protein [Oligotropha carboxidovorans OM5] Length = 325 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 102/186 (54%), Positives = 139/186 (74%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R KFLD P+A+D+IVR V+AGLP+ D++ V+V S +P+RSEFR +IETQ Sbjct: 139 LNFLKKRREKKFLDALPDAVDVIVRGVKAGLPLFDSLKVVVNDSPEPLRSEFRAIIETQS 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ R+ MPL E +FF V+ +Q + GGNLSEAL NLS++LRDRK MKAK+Q Sbjct: 199 IGMPLGEACMRLYERMPLPEANFFGIVVGIQMKSGGNLSEALGNLSKVLRDRKKMKAKIQ 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V +VYF SP Y+++L +P G ++L V+ A+M G+M+M+ Sbjct: 259 AMSMEAKASAGIIGSLPPAVMMIVYFMSPDYISLLWTEPAGRVMLAVSGAWMFAGVMIMK 318 Query: 181 LMINFD 186 MINFD Sbjct: 319 KMINFD 324 >gi|90419768|ref|ZP_01227677.1| putative Flp pilus assembly protein TadB, type II/IV secretion system [Aurantimonas manganoxydans SI85-9A1] gi|90335809|gb|EAS49557.1| putative Flp pilus assembly protein TadB, type II/IV secretion system [Aurantimonas manganoxydans SI85-9A1] Length = 335 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 98/186 (52%), Positives = 142/186 (76%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR KF ++FPNA+D+IVR V++GLP++D + ++ G++ DPVRSEFR++IE+Q Sbjct: 149 LSRARKKRFHKFGEEFPNAIDLIVRGVKSGLPLNDTLRIVSGETLDPVRSEFRKIIESQQ 208 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ +SE++ ++ R +P E +FF+ VI++QSQ GGNLSEAL NLS +LRDRK M+AKVQ Sbjct: 209 MGVPISEAVEKLYRNIPTPEANFFAIVIAIQSQAGGNLSEALGNLSNVLRDRKKMRAKVQ 268 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKAS IIG+LP V+ LVY T+P Y++VL GH++L V+ +M G+ VM+ Sbjct: 269 AMSMEAKASGGIIGALPVVVAGLVYITTPDYISVLFTTGTGHLILAVSGLWMATGVFVMK 328 Query: 181 LMINFD 186 MI+FD Sbjct: 329 KMISFD 334 >gi|316933035|ref|YP_004108017.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1] gi|315600749|gb|ADU43284.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1] Length = 324 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 94/186 (50%), Positives = 135/186 (72%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R KFL P+A+D+IVR ++AGLP+ D++ V+ + +P+RSEF +IETQ Sbjct: 138 LGFLKRRREKKFLAALPDAVDVIVRGIKAGLPLFDSIKVVAADAPEPLRSEFNAIIETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L+++ +R+ MPL E +FF VI++Q + GGNLSEAL+NLS++LRDRK M K+Q Sbjct: 198 IGMPLADACARLYERMPLPEANFFGIVIAIQQKSGGNLSEALSNLSKVLRDRKKMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIG+LP V LVY T+P Y+++L P G +LL +A +M GI VM+ Sbjct: 258 AMSMEAKASATIIGALPLIVMLLVYLTTPDYISLLWTHPTGRLLLAGSALWMSAGIFVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|146338119|ref|YP_001203167.1| putative pilus assembly protein membrane protein [Bradyrhizobium sp. ORS278] gi|146190925|emb|CAL74930.1| putative pilus assembly protein; putative membrane protein [Bradyrhizobium sp. ORS278] Length = 324 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 93/186 (50%), Positives = 134/186 (72%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L K+R KFL P+A+D+IVR ++AGLP+ +++ V+ + +P+RSEF +IETQ Sbjct: 138 LGYLKKRREKKFLAALPDAVDVIVRGIKAGLPLFESIKVVAADAPEPLRSEFLAIIETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ +R+ MPL E +FF VI++Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPLGEACARLYERMPLPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY ++P Y+++L P G ++L +M +GI+VM+ Sbjct: 258 AMSMEAKASAGIIGSLPPIVMLLVYLSTPDYISLLWTHPTGQLMLVGCVVWMSMGILVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|154250693|ref|YP_001411517.1| type II secretion system protein [Parvibaculum lavamentivorans DS-1] gi|154154643|gb|ABS61860.1| type II secretion system protein [Parvibaculum lavamentivorans DS-1] Length = 328 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 91/186 (48%), Positives = 140/186 (75%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +LIK+R F ++F NA+D+IVR V++GLPV+D + +I +S +PVR+EF+ ++E Q Sbjct: 142 LSYLIKRRQKAFTEEFANAIDVIVRGVKSGLPVNDCLKLIATESPEPVRTEFQGIVEGQR 201 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G++L + ++++ MPL EV+FF V+++Q + GGNLSEAL NLS++LR+RK M+ K+Q Sbjct: 202 VGVTLEQGLAKIYERMPLPEVNFFQIVLAIQQKTGGNLSEALGNLSKVLRERKKMRGKIQ 261 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S EAKASA IIGSLP V L+YF+SPGYM+VL + G+M++ +M IG++VM+ Sbjct: 262 AMSQEAKASAGIIGSLPPGVMLLIYFSSPGYMDVLFSTTAGNMIIVGGIMWMAIGVLVMK 321 Query: 181 LMINFD 186 MI+F Sbjct: 322 KMIDFK 327 >gi|153008063|ref|YP_001369278.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188] gi|151559951|gb|ABS13449.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188] Length = 337 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 108/185 (58%), Positives = 141/185 (76%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 K+R KFL++FPNALD+IVR+ RAGLP++D + +I ++ +PV+SEF++V+E Q +G Sbjct: 153 QKRKRRLKKFLEEFPNALDVIVRATRAGLPLNDGLRLIASEAVEPVKSEFKKVVEAQQIG 212 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS+ E++ +M MP E +FF+ VI +Q+Q GGNLSEAL NLS++LRDRK MKAKV AL Sbjct: 213 LSIPEAVGKMPDSMPCPETNFFAIVIQIQAQAGGNLSEALNNLSKVLRDRKKMKAKVDAL 272 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 SMEAKASA IIG+LPF V LVY TSP YM +L GHMLLG+AA ML GI +M+ M Sbjct: 273 SMEAKASAAIIGALPFIVMVLVYLTSPQYMTLLFTSSTGHMLLGIAAVLMLTGIFIMKNM 332 Query: 183 INFDV 187 INFD+ Sbjct: 333 INFDM 337 >gi|39936744|ref|NP_949020.1| type II secretion system protein [Rhodopseudomonas palustris CGA009] gi|39650600|emb|CAE29123.1| conserved unknown protein [Rhodopseudomonas palustris CGA009] Length = 324 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 96/186 (51%), Positives = 134/186 (72%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L ++R KFL P+A+DIIVR ++AGLP+ D++ ++ S +P+RSEF +IETQ Sbjct: 138 LGYLKRRREKKFLAALPDAVDIIVRGIKAGLPLFDSIKMVAADSPEPLRSEFNAIIETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ + E+ +R+ MP+ E +FF VIS+Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPIGEACARLYERMPIPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY T+P Y+++L P G +LL +A +M GI VM+ Sbjct: 258 AMSMEAKASAAIIGSLPIIVMMLVYVTTPDYISLLWTHPTGRILLAASALWMSAGIFVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|150398545|ref|YP_001329012.1| type II secretion system protein [Sinorhizobium medicae WSM419] gi|150030060|gb|ABR62177.1| type II secretion system protein [Sinorhizobium medicae WSM419] Length = 336 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 111/187 (59%), Positives = 153/187 (81%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + IK+R KFLD+FPNALD++VRS+++GLP++DA+ +I +PVR+EFRRV+E+Q Sbjct: 150 VGSRIKRRCRKFLDEFPNALDVMVRSIKSGLPLNDALRLIASDGQEPVRTEFRRVVESQQ 209 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GL++ E+ +RM+ +PL EV+FF+ VI++Q+Q GGNLSEAL NLS++LR+R+ MKAKV Sbjct: 210 VGLNVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVN 269 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH+++G +A +M IGI +MR Sbjct: 270 ALSMEAKASACIIGALPFIVATLVYLTSPAYMAILFTDPRGHLIMGASAVWMSIGIWMMR 329 Query: 181 LMINFDV 187 MINFD+ Sbjct: 330 NMINFDI 336 >gi|260771471|ref|ZP_05880396.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972] gi|260613597|gb|EEX38791.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972] Length = 321 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 60/187 (32%), Positives = 104/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I R +KF + P+ALDII R ++AG P++ + + + P+ EF+ + Sbjct: 135 LQKKISDRLSKFEEQLPDALDIIRRMLQAGQPLTQSFNEVGNEMPAPIGVEFKNTFNLLN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I +M P + FS+ + +Q + GGNLSE L +S++LR R + K++ Sbjct: 195 YGYDLRLAIMQMADRTPTVSMLAFSSAVLLQKETGGNLSENLDKVSKVLRARFKLARKIK 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +S E++ SAWI+ PF + ++ PGY++ L DPRG ++ + +G + MR Sbjct: 255 TISAESRMSAWILVLSPFVLFIVMSLIHPGYVSPLYEDPRGVGVISYGIVSLFLGSLWMR 314 Query: 181 LMINFDV 187 +INF+V Sbjct: 315 HIINFEV 321 >gi|193213110|ref|YP_001999063.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327] gi|193086587|gb|ACF11863.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327] Length = 322 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 104/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR F + P ALD + RS+RAG ++ A+ ++ + P+ EF+ V + Sbjct: 136 LSRQANKRRQAFSEKLPEALDYVTRSLRAGHSLTSAIGIVGKEFPGPIGQEFKIVFDEIS 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ E++ R+ + +++FF + +Q + GGNL+E L L++ +R+R ++ KV+ Sbjct: 196 FGIPFKEAMDRLADRVESVDLNFFVISLEIQHETGGNLTELLEGLAKTIRERFKLRGKVR 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + SA ++GS+PF ++ ++ +P Y +VL + P+GH L+ V A M +G + Sbjct: 256 TLSAEGRISALVLGSMPFILTAILTVINPEYTSVLWSTPQGHTLIMVMAVLMALGFFSLN 315 Query: 181 LMINFDV 187 + V Sbjct: 316 RISQIKV 322 >gi|27376546|ref|NP_768075.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] gi|27349687|dbj|BAC46700.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] Length = 340 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 98/186 (52%), Positives = 135/186 (72%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R +KFL P+A+D+IVR ++AGLP+ +++ V+ S +P+RSEF +IETQ Sbjct: 154 LSFLKKRRESKFLAALPDAVDVIVRGIKAGLPLFESIKVVAADSPEPLRSEFLAIIETQA 213 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ SR+ MPL E +FF VIS+Q + GGNLSEAL NLS++LRDRK M+ K+Q Sbjct: 214 IGMPLGEACSRLYDRMPLPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMREKIQ 273 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY T+P Y+++L P G ++L +M +GIMVM+ Sbjct: 274 AMSMEAKASAAIIGSLPPIVMFLVYLTTPHYISLLWTHPTGQLMLVGCVVWMSVGIMVMK 333 Query: 181 LMINFD 186 MINFD Sbjct: 334 KMINFD 339 >gi|192292570|ref|YP_001993175.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1] gi|192286319|gb|ACF02700.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1] Length = 324 Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 95/186 (51%), Positives = 134/186 (72%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L ++R +FL P+A+DIIVR ++AGLP+ D++ ++ S +P+RSEF +IETQ Sbjct: 138 LGYLKRRREKRFLAALPDAVDIIVRGIKAGLPLFDSIKMVAADSPEPLRSEFNAIIETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ + E+ +R+ MP+ E +FF VIS+Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPIGEACARLYERMPIPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY T+P Y+++L P G +LL +A +M GI VM+ Sbjct: 258 AMSMEAKASAAIIGSLPIIVMMLVYVTTPDYISLLWTHPTGRILLAASALWMSAGIFVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|239833233|ref|ZP_04681562.1| type II secretion system protein [Ochrobactrum intermedium LMG 3301] gi|239825500|gb|EEQ97068.1| type II secretion system protein [Ochrobactrum intermedium LMG 3301] Length = 336 Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 110/185 (59%), Positives = 142/185 (76%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 H K+R KFL++FPNALD+IVR+ RAGLP++D + +I ++ +PV+SEF++V+E Q +G Sbjct: 152 HRRKQRLKKFLEEFPNALDVIVRATRAGLPLNDGLRLIASEAVEPVKSEFKKVVEAQQIG 211 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS+ E++ +M MP E +FF+ VI +Q+Q GGNLSEAL NLS++LRDRK MKAKV AL Sbjct: 212 LSIPEAVGKMPDSMPCPETNFFAIVIQIQAQAGGNLSEALNNLSKVLRDRKKMKAKVNAL 271 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 SMEAKASA IIG+LPF V LVY TSP YM +L GHMLLGVAA ML GI +M+ M Sbjct: 272 SMEAKASAAIIGALPFIVMVLVYLTSPLYMTLLFTSSTGHMLLGVAAVLMLTGIFIMKNM 331 Query: 183 INFDV 187 INFD+ Sbjct: 332 INFDM 336 >gi|323137429|ref|ZP_08072507.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242] gi|322397416|gb|EFX99939.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242] Length = 326 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 99/187 (52%), Positives = 135/187 (72%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R +KF+++FP ++D+I+R V+AGLPV+D VI + +PVR EFRR+IE+Q Sbjct: 140 LSFLRKRRISKFIEEFPGSIDVIIRGVKAGLPVADCFRVIASEGQEPVRGEFRRIIESQA 199 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GLS+ E++ R +P+ E SFFS VI++Q + GGNLSEAL NLSR+LRDRK MK KV+ Sbjct: 200 IGLSVGEAVERFAERVPVPEASFFSIVINIQQKSGGNLSEALGNLSRVLRDRKKMKGKVK 259 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S EAKASA IIGSLPF V VY T+P YM VL G +++ +M IG+ +MR Sbjct: 260 AMSSEAKASAGIIGSLPFLVGGAVYLTTPSYMMVLFTTNIGKIIIACGLLWMAIGVFIMR 319 Query: 181 LMINFDV 187 MINFD+ Sbjct: 320 KMINFDI 326 >gi|194335918|ref|YP_002017712.1| type II secretion system protein [Pelodictyon phaeoclathratiforme BU-1] gi|194308395|gb|ACF43095.1| type II secretion system protein [Pelodictyon phaeoclathratiforme BU-1] Length = 332 Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 59/187 (31%), Positives = 109/187 (58%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + K+R F D P ALD I R++RAG ++ A+ ++ + DP+ EF+ V + Sbjct: 146 LLRQAKQRRKVFGDKLPEALDYISRAMRAGHSLTSAIGMVGKELPDPIGYEFKTVFDEIS 205 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ ++I + + +++FF + +Q + GGNL+E L L++ +R+R ++ KV+ Sbjct: 206 FGIPFKDAIGHLADRIQSNDLNFFVISLKIQHETGGNLAELLHGLAKTIRERVKLRGKVR 265 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E +ASAWI+G++PF + ++ +PGY++VL + P+G L+ + M +GI V+ Sbjct: 266 TLSSEGRASAWILGTMPFVFAGILMLINPGYISVLWSTPQGQNLMFIGCGLMAVGIFVLS 325 Query: 181 LMINFDV 187 ++ V Sbjct: 326 RIVQIKV 332 >gi|328953759|ref|YP_004371093.1| Type II secretion system F domain protein [Desulfobacca acetoxidans DSM 11109] gi|328454083|gb|AEB09912.1| Type II secretion system F domain protein [Desulfobacca acetoxidans DSM 11109] Length = 339 Score = 127 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 106/187 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + K R KF P AL ++ RS++AG + ++ + +P+ EF + + + Sbjct: 153 LHMKKKYRLKKFEKQLPEALGLMARSLKAGHSFPSTMQLVADEMPNPIGIEFFKTFKEFN 212 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 GL +S +++ + + + LQ++ FF T I++Q + GGNL E L ++ ++RDR + ++ Sbjct: 213 YGLDMSSALANLQKRIDLQDLKFFVTAINIQRETGGNLVEILEKIASLIRDRFKLVNHIK 272 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + S I+ LP ++ ++YF + YM +LI P G M++GVA L+G +++ Sbjct: 273 AITSEGRFSGLILTCLPPGMAIILYFLNKKYMLLLITHPWGKMMVGVALTMQLLGYLMIH 332 Query: 181 LMINFDV 187 ++N V Sbjct: 333 KIVNIKV 339 >gi|315497461|ref|YP_004086265.1| type II secretion system f domain protein [Asticcacaulis excentricus CB 48] gi|315415473|gb|ADU12114.1| Type II secretion system F domain protein [Asticcacaulis excentricus CB 48] Length = 326 Score = 127 bits (318), Expect = 8e-28, Method: Composition-based stats. Identities = 87/186 (46%), Positives = 125/186 (67%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+RT KF +F +A+DI+VR +++GLPV D + +I + P+ EF+R+ E Sbjct: 140 LSFLAKRRTTKFTANFADAIDILVRGIKSGLPVHDGLKIIAKELPAPLGPEFQRLNENIS 199 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L S+ +M MP E+ FF+ VI++Q + GGNL+EAL NLS +LR R+ M+ K++ Sbjct: 200 IGMGLDMSLEKMCERMPTPELRFFTIVIAIQQKTGGNLAEALGNLSHVLRSRRMMREKIK 259 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EA ASA IIG LP V ++Y T+PGYM L+ DPRG+ +L A +ML GI +MR Sbjct: 260 ALSSEAIASASIIGVLPPGVGIMIYITNPGYMGPLLTDPRGNFMLLGGAVWMLCGIFMMR 319 Query: 181 LMINFD 186 MINF Sbjct: 320 KMINFK 325 >gi|91977989|ref|YP_570648.1| type II secretion system protein [Rhodopseudomonas palustris BisB5] gi|91684445|gb|ABE40747.1| type II secretion system protein [Rhodopseudomonas palustris BisB5] Length = 324 Score = 127 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 90/186 (48%), Positives = 132/186 (70%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R +FL+ P+A+D+IVR ++AGLP+ D++ V+ S +P+++EF +IETQ Sbjct: 138 LGFLKKRREKRFLNALPDAVDVIVRGIKAGLPLFDSIKVVAADSPEPLKTEFNAIIETQT 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ + E+ +R+ MP+ E +FF VI++Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPIGEACARLYDRMPVPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKRMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY ++P Y+ +L P G ++L +M GI+VM+ Sbjct: 258 AMSMEAKASAAIIGSLPPIVMLLVYMSTPDYIALLWTHPTGRLMLAGCVVWMAAGILVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|218516696|ref|ZP_03513536.1| probable pilus assembly protein [Rhizobium etli 8C-3] Length = 335 Score = 127 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 113/187 (60%), Positives = 155/187 (82%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + LIK+R KFL++ PNALD+I RS+++GLP++DA+ +I + ++PV+SEFRRVIE Q Sbjct: 149 LGFLIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIGTEGTEPVKSEFRRVIEAQQ 208 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GLS+ ++ +RM +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV Sbjct: 209 VGLSIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVS 268 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH+++G++A +M IGI VMR Sbjct: 269 ALSMEAKASAVIIGALPFIVATLVYLTSPNYMMILFTDPRGHLIMGISAVWMSIGIFVMR 328 Query: 181 LMINFDV 187 M+NFD+ Sbjct: 329 NMVNFDI 335 >gi|322434107|ref|YP_004216319.1| Type II secretion system F domain protein [Acidobacterium sp. MP5ACTX9] gi|321161834|gb|ADW67539.1| Type II secretion system F domain protein [Acidobacterium sp. MP5ACTX9] Length = 320 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 112/187 (59%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K R KF + P+A+D++ R++RAG +S A+ V+ +S++P+ EF V + Q Sbjct: 134 LKWKKSSRLGKFEEALPDAIDLMARALRAGHAMSSAIEVVAEESAEPLAGEFAIVFQQQK 193 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 GL +++ ++ +P +++SF T I VQ + GG+L++ L +R++R+R ++ +++ Sbjct: 194 FGLQFRDALLQLGDRVPSKDLSFLITAILVQKETGGDLTDVLDRTTRVIRERIRIQGEIR 253 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + + + WI+ +LP + L+ +PGY ++L +DP G +LLG +LIG ++ Sbjct: 254 TYTAQGRLTGWILSALPVVMLCLINVATPGYSHILFHDPTGQLLLGAGGVLILIGGFIIS 313 Query: 181 LMINFDV 187 +++ V Sbjct: 314 RVVDIKV 320 >gi|194288829|ref|YP_002004736.1| tad secretion system, secretion accessory protein [Cupriavidus taiwanensis LMG 19424] gi|193222664|emb|CAQ68667.1| Tad secretion system, secretion accessory protein [Cupriavidus taiwanensis LMG 19424] Length = 325 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 62/185 (33%), Positives = 109/185 (58%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 HL KR + P+A+D+I R++RAG S A++++ + P+ EFR E + G Sbjct: 141 HLRAKRLKQLEAQLPDAVDMISRALRAGHSFSGALSMVGQEMKAPIGPEFRTTFEEINYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++L E+++ + +P+ ++ +F + +Q + GGNL+E L + ++R+R + K++ L Sbjct: 201 VALDEAMTNLAMRVPVADLRYFVIAVLIQRESGGNLAEILDTIGTMVRERLKLFDKIRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E K SAW++G LPF + ++ +PG+MNVL DP G ++G A M G++ MR + Sbjct: 261 SAEGKLSAWVLGLLPFGTAGMILVINPGFMNVLWEDPLGLRMIGGALVSMTFGVLWMRKI 320 Query: 183 INFDV 187 I V Sbjct: 321 IRIRV 325 >gi|227823975|ref|YP_002827948.1| putative type II/IV secretion system protein TadB, Flp pilus assembly protein TadB [Sinorhizobium fredii NGR234] gi|227342977|gb|ACP27195.1| putative type II/IV secretion system protein TadB, Flp pilus assembly protein TadB [Sinorhizobium fredii NGR234] Length = 336 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 111/184 (60%), Positives = 154/184 (83%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++K+R KFLD+FPNALD++VRS+++GLP++DA+ +I +PV++EFRRV+E+Q +GL Sbjct: 153 MVKRRCKKFLDEFPNALDVMVRSIKSGLPLNDALRLIASDGQEPVKTEFRRVVESQQVGL 212 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++ ++ +RM++ +PL EV+FF+ VI++Q+Q GGNLSEAL NLS++LR+RK MKAKV ALS Sbjct: 213 NVPDACARMIQSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERKKMKAKVGALS 272 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LPF V+TLVY TSP YM VL DPRGH+++G +A +M IGI VMR MI Sbjct: 273 MEAKASACIIGALPFIVATLVYLTSPEYMMVLFTDPRGHLIMGASAVWMSIGIFVMRNMI 332 Query: 184 NFDV 187 NFD+ Sbjct: 333 NFDI 336 >gi|254780722|ref|YP_003065135.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040399|gb|ACT57195.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] Length = 187 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 187/187 (100%), Positives = 187/187 (100%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH Sbjct: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ Sbjct: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR Sbjct: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 Query: 181 LMINFDV 187 LMINFDV Sbjct: 181 LMINFDV 187 >gi|225872757|ref|YP_002754214.1| bacterial type II secretion system protein F domain protein [Acidobacterium capsulatum ATCC 51196] gi|225792618|gb|ACO32708.1| bacterial type II secretion system protein F domain protein [Acidobacterium capsulatum ATCC 51196] Length = 323 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 98/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R KF P+++D++ R++RAG V+ A+ V+ Q +PV SEF V Q+ Sbjct: 137 LNFQRAQRLKKFNAALPDSIDLLGRALRAGHSVASAIEVVSEQGQEPVASEFGEVFRAQN 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 GL +++ ++ +P ++ F T + VQ + GGNL+E L + ++R+R ++ +V+ Sbjct: 197 FGLPFRDAMLQLAERVPSSDLRFLVTAMMVQKETGGNLTEILDRTTYVIRERLRIQGEVK 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + + + I+ LP + L+ +P Y L DP G +L A + +G + Sbjct: 257 TKTAQGRLTGVILALLPIILGILINVINPDYAKPLFTDPLGKKMLYAGAGLISVGAFFIN 316 Query: 181 LMINFDV 187 ++ +V Sbjct: 317 KIVKIEV 323 >gi|190889885|ref|YP_001976427.1| pilus assembly protein [Rhizobium etli CIAT 652] gi|190695164|gb|ACE89249.1| probable pilus assembly protein [Rhizobium etli CIAT 652] gi|327194690|gb|EGE61536.1| putative pilus assembly protein [Rhizobium etli CNPAF512] Length = 335 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 113/187 (60%), Positives = 155/187 (82%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + LIK+R KFL++ PNALD+I RS+++GLP++DA+ +I + ++PV+SEFRRVIE Q Sbjct: 149 LGFLIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIGTEGTEPVKSEFRRVIEAQQ 208 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GLS+ ++ +RM +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV Sbjct: 209 VGLSIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVS 268 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH+++G++A +M IGI VMR Sbjct: 269 ALSMEAKASAVIIGALPFIVATLVYLTSPNYMMILFTDPRGHLIMGISAVWMSIGIFVMR 328 Query: 181 LMINFDV 187 M+NFD+ Sbjct: 329 NMVNFDI 335 >gi|15963898|ref|NP_384251.1| hypothetical protein SMc02821 [Sinorhizobium meliloti 1021] gi|307315795|ref|ZP_07595309.1| Type II secretion system F domain protein [Sinorhizobium meliloti BL225C] gi|15073073|emb|CAC41532.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021] gi|306898563|gb|EFN29236.1| Type II secretion system F domain protein [Sinorhizobium meliloti BL225C] Length = 336 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 111/187 (59%), Positives = 154/187 (82%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++K+R KFLD+FPN+LD++VRS+++GLP++DA+ +I +PVR+EFRRV+E+Q Sbjct: 150 VGSMVKRRCRKFLDEFPNSLDVMVRSIKSGLPLNDALRLIASDGQEPVRTEFRRVVESQQ 209 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GL++ E+ +RM+ +PL EV+FF+ VI++Q+Q GGNLSEAL NLS++LR+R+ MKAKV Sbjct: 210 VGLNVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVS 269 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASA IIG+LPF V+TLVY TSP YM VL DPRGH+++G +A +M IGI VMR Sbjct: 270 ALSMEAKASACIIGALPFIVATLVYLTSPDYMMVLFTDPRGHIIMGASAVWMSIGIWVMR 329 Query: 181 LMINFDV 187 MINFD+ Sbjct: 330 NMINFDI 336 >gi|148976657|ref|ZP_01813344.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3] gi|145964008|gb|EDK29266.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3] Length = 321 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 58/187 (31%), Positives = 106/187 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ + R A+F + P ALDII R+++AG P+ + + + +P+ EF+ + Sbjct: 135 VQNRVTYRMARFEEQLPEALDIIRRALQAGQPIVQSFNEVGEEMPEPIGVEFKNTYNLLN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I +M +P + FS+ + +Q + GGNLSE L +S +LR R ++ K++ Sbjct: 195 YGYDLRLAIMQMTERVPTVSMLAFSSAVMLQKETGGNLSENLQKVSEVLRARFKLERKIK 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E++ SAWI+ PF + + F +P Y+ L +DPRG ++ + + IG + +R Sbjct: 255 TLSAESRLSAWILTLSPFVLFFGLKFVNPEYIEPLYSDPRGISMVSIGVILLAIGALWIR 314 Query: 181 LMINFDV 187 +IN ++ Sbjct: 315 KIINIEI 321 >gi|315181053|gb|ADT87967.1| Flp pilus assembly protein TadB [Vibrio furnissii NCTC 11218] Length = 321 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 61/187 (32%), Positives = 103/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I R +KF + P+ALDII R ++AG P++ + + + P+ EF+ + Sbjct: 135 LQKKISDRLSKFEEQLPDALDIIRRMLQAGQPLTQSFNEVGNEMPAPIGVEFKNTFNLLN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I +M P + FS+ + +Q + GGNLSE L +S++LR R + K++ Sbjct: 195 YGYDLRLAIMQMADRTPTVSMLAFSSAVLLQKETGGNLSENLDKVSKVLRARFKLARKIK 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +S E++ SAWI+ PF + + PGY++ L DPRG L+ + +G + MR Sbjct: 255 TISAESRMSAWILVLSPFVLFIAMSIIHPGYVSPLYEDPRGVGLISYGIVSLFMGSLWMR 314 Query: 181 LMINFDV 187 +INF+V Sbjct: 315 HIINFEV 321 >gi|92116009|ref|YP_575738.1| type II secretion system protein [Nitrobacter hamburgensis X14] gi|91798903|gb|ABE61278.1| type II secretion system protein [Nitrobacter hamburgensis X14] Length = 324 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 91/186 (48%), Positives = 128/186 (68%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L +R FL P+A+D+IVR ++AGLP+ +++ V+ S +P++SEF +IETQ Sbjct: 138 LGFLKTRREKAFLRALPDAVDVIVRGIKAGLPLFESIKVVAADSPEPLKSEFAAIIETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ +R+ MP+ E +FF VI++Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPLGEACARLYERMPVPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY T+P Y+ +L P G ++L +M GI VM+ Sbjct: 258 AMSMEAKASAAIIGSLPPVVMMLVYLTTPDYIAMLWTHPTGRLMLAGCVLWMSAGIFVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|307320430|ref|ZP_07599847.1| Type II secretion system F domain protein [Sinorhizobium meliloti AK83] gi|306893996|gb|EFN24765.1| Type II secretion system F domain protein [Sinorhizobium meliloti AK83] Length = 336 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 111/187 (59%), Positives = 154/187 (82%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++K+R KFLD+FPN+LD++VRS+++GLP++DA+ +I +PVR+EFRRV+E+Q Sbjct: 150 VGSMVKRRCRKFLDEFPNSLDVMVRSIKSGLPLNDALRLIASDGQEPVRTEFRRVVESQQ 209 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GL++ E+ +RM+ +PL EV+FF+ VI++Q+Q GGNLSEAL NLS++LR+R+ MKAKV Sbjct: 210 VGLNVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVG 269 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASA IIG+LPF V+TLVY TSP YM VL DPRGH+++G +A +M IGI VMR Sbjct: 270 ALSMEAKASACIIGALPFIVATLVYLTSPDYMMVLFTDPRGHIIMGASAVWMSIGIWVMR 329 Query: 181 LMINFDV 187 MINFD+ Sbjct: 330 NMINFDI 336 >gi|323491539|ref|ZP_08096718.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546] gi|323314115|gb|EGA67200.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546] Length = 322 Score = 126 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 62/187 (33%), Positives = 100/187 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I R A F + P ALDI+ R ++AG PV+ A + + P+ EF+ + Sbjct: 136 LGKKISDRLAAFEEQLPEALDIMRRMLQAGQPVTQAFNEVGVEMPAPIGIEFKNTFNLLN 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + +I +M P + FS+ + +Q + GGNLSE L +SR+LR R ++ K++ Sbjct: 196 YGYDMRMAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSRVLRARFKLQRKIK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E++ SAWI+ PF + + +PGY+ L DPRG L+ + G + +R Sbjct: 256 TLSAESRLSAWILVLSPFVLFIFLSVINPGYVEPLYTDPRGMKLVSGGVVSLFFGSLWIR 315 Query: 181 LMINFDV 187 +INF+V Sbjct: 316 KIINFEV 322 >gi|218461009|ref|ZP_03501100.1| probable pilus assembly protein [Rhizobium etli Kim 5] gi|218662450|ref|ZP_03518380.1| probable pilus assembly protein [Rhizobium etli IE4771] Length = 335 Score = 126 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 113/187 (60%), Positives = 154/187 (82%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + LIK+R KFL++ PNALD+I RS+++GLP++DA+ +I + ++PV+SEFRR+IE Q Sbjct: 149 LGFLIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIGTEGTEPVKSEFRRIIEAQQ 208 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GLS+ ++ +RM +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV Sbjct: 209 VGLSIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVS 268 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH ++GV+A +M IGI VMR Sbjct: 269 ALSMEAKASAVIIGALPFIVATLVYLTSPNYMMILFTDPRGHFIMGVSAIWMSIGIFVMR 328 Query: 181 LMINFDV 187 M+NFD+ Sbjct: 329 NMVNFDI 335 >gi|269126092|ref|YP_003299462.1| type II secretion system protein [Thermomonospora curvata DSM 43183] gi|268311050|gb|ACY97424.1| type II secretion system protein [Thermomonospora curvata DSM 43183] Length = 660 Score = 126 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 99/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ ++R F D P+AL ++ S+R+G V+ +V + G P+ E R + Sbjct: 474 LRGRAERRLTAFADQLPDALQLVAGSLRSGFSVAQSVERLAGLELQPMGQEMARAVAQTR 533 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+S +++ + M +++ + I +Q ++GGNLSE + + +R+R ++ +++ Sbjct: 534 LGVSTEDALRSVADRMNCRDLHWVVLAIQIQREVGGNLSEVIETTAETMRERTRLRRQIR 593 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + SA+++ +LP L+ + P YM L P G ++ +A + +G + + Sbjct: 594 ALSAEGRLSAYVLIALPVITGGLLTVSRPDYMRPLYTTPMGIGMICLAVFLVALGWLWLS 653 Query: 181 LMINFDV 187 ++ +V Sbjct: 654 KVVKVEV 660 >gi|254473793|ref|ZP_05087188.1| type II secretion system protein [Pseudovibrio sp. JE062] gi|211957179|gb|EEA92384.1| type II secretion system protein [Pseudovibrio sp. JE062] Length = 339 Score = 126 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 85/187 (45%), Positives = 135/187 (72%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR +FL++FPNA+DIIVR +++G+P+ D + + ++ DPV +EF V++ Sbjct: 153 VSRARKKRFNRFLEEFPNAVDIIVRGIKSGMPLGDCMHIAASEAKDPVGTEFSLVLDKMQ 212 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L+E+I + + +PLQE +F + V+++Q+Q GG+LSEAL NLS+ LR RK MK K++ Sbjct: 213 MGMPLAEAIQSLPKRVPLQETNFLAIVVTIQAQAGGSLSEALGNLSKTLRQRKEMKGKIR 272 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S EAK+SA IIGSLPF V+ L++ SP Y+ +L++ G +L+G+ +M IGI+VMR Sbjct: 273 AVSQEAKSSAAIIGSLPFIVTALLFVLSPDYIKLLVDTDIGLVLIGIGLFWMSIGILVMR 332 Query: 181 LMINFDV 187 MI+F + Sbjct: 333 KMIDFKI 339 >gi|187919328|ref|YP_001888359.1| type II secretion system protein [Burkholderia phytofirmans PsJN] gi|187717766|gb|ACD18989.1| type II secretion system protein [Burkholderia phytofirmans PsJN] Length = 325 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 110/185 (59%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 KR + P+A D+I R++RAG A+ ++ + +P+ EF V + + G Sbjct: 141 RKRTKRVLQLERQLPDAADLIARALRAGHSFPAALGMVGEELPNPLGGEFALVFDEINYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +S+S+++ MV +P++++ +F + +Q + GGNL+E L +++ I+R+R + KV+ L Sbjct: 201 VSMSDALLNMVNRVPVEDLRYFVIAVLIQREAGGNLAEILGSIAGIIRERLKLLGKVRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAW++G LPF + L+ +PGY++V DP G + GVA A ML GI+ MR + Sbjct: 261 SAEGRLSAWVLGVLPFAILGLLSVLNPGYISVFWKDPAGPQIAGVAIAMMLFGILWMRKV 320 Query: 183 INFDV 187 + V Sbjct: 321 VRIRV 325 >gi|163757631|ref|ZP_02164720.1| hypothetical protein HPDFL43_19512 [Hoeflea phototrophica DFL-43] gi|162285133|gb|EDQ35415.1| hypothetical protein HPDFL43_19512 [Hoeflea phototrophica DFL-43] Length = 336 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 105/187 (56%), Positives = 149/187 (79%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L +R FL +FPNALDI+VRS+++GLP++DA+ +I + +PVR+EF+R++++Q Sbjct: 150 VGYLRNRRLKAFLSEFPNALDIMVRSIKSGLPLNDAIRMISAEGQEPVRTEFKRIVDSQQ 209 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+++ E+ +R+ +PL E +FFS VI++Q+Q GGNLSEAL NLSR+LRDRK MKAK+ Sbjct: 210 MGMNIPEACARLYSRIPLSEANFFSIVIAIQAQAGGNLSEALGNLSRVLRDRKKMKAKIN 269 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASA IIG+LPF V+ LVY TSP Y+ +L D RGH++LG +A +M IGI+VMR Sbjct: 270 ALSMEAKASAAIIGALPFIVALLVYLTSPDYIMILFTDTRGHLILGASAIWMSIGILVMR 329 Query: 181 LMINFDV 187 MINFD+ Sbjct: 330 NMINFDI 336 >gi|91788418|ref|YP_549370.1| type II secretion system protein [Polaromonas sp. JS666] gi|91697643|gb|ABE44472.1| type II secretion system protein [Polaromonas sp. JS666] Length = 325 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 61/187 (32%), Positives = 108/187 (57%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR + P+ALD++ R++RAG A+ ++ + +DP+ EFR + + Sbjct: 139 VTRAKRKRLDRIEHQLPDALDLMGRALRAGHAFPTALKMVGDEMNDPLAGEFRIAFDEVN 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+++ +++ M +P ++ +F + +Q + GGNLSE L ++S I+RDR + +V+ Sbjct: 199 FGIAMPDALMNMATRVPSTDLRYFVIAVLIQRETGGNLSELLTSISAIIRDRIKLMGQVR 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E K SAW++ LPF + ++ T+P ++ VL DP G +L A M +GI+VMR Sbjct: 259 VLSAEGKMSAWVLSLLPFGAAFMIQLTNPKFLEVLYTDPAGRKMLAAAIVMMALGILVMR 318 Query: 181 LMINFDV 187 +I V Sbjct: 319 KIIRIRV 325 >gi|209551763|ref|YP_002283680.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537519|gb|ACI57454.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 335 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 114/187 (60%), Positives = 154/187 (82%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + LIK+R KFL++ PNALD+I RS+++GLP++DA+ +I + ++PV+SEFRRVIE Q Sbjct: 149 VGFLIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIATEGTEPVKSEFRRVIEAQQ 208 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GLS+ ++ +RM +MPLQEVSFF+ VI++QSQ GGNLSEA+ NLS+++R+R+ MKAKV Sbjct: 209 VGLSIPDACARMTAHMPLQEVSFFAIVIAIQSQAGGNLSEAIGNLSKVIRERRKMKAKVS 268 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH ++GV+A +M IGI VMR Sbjct: 269 ALSMEAKASAVIIGALPFIVATLVYLTSPSYMMILFTDPRGHFIMGVSAIWMSIGIFVMR 328 Query: 181 LMINFDV 187 M+NFD+ Sbjct: 329 NMVNFDI 335 >gi|86355868|ref|YP_467760.1| pilus assembly protein [Rhizobium etli CFN 42] gi|86279970|gb|ABC89033.1| probable pilus assembly protein [Rhizobium etli CFN 42] Length = 335 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 115/187 (61%), Positives = 155/187 (82%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + LIK+R KFL++FPNALD+I RS+++GLP++DA+ +I + ++PV+SEFRRVIE Q Sbjct: 149 IGFLIKRRQNKFLNEFPNALDVITRSIKSGLPLNDAIRLIATEGTEPVKSEFRRVIEAQQ 208 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GLS+ ++ +RM +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV Sbjct: 209 VGLSIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVS 268 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASA IIG+LPF V+TLVY TSP YM VL DPRGH ++G +A +M IGI+VMR Sbjct: 269 ALSMEAKASAVIIGALPFIVATLVYLTSPNYMIVLFTDPRGHFIMGASAVWMSIGILVMR 328 Query: 181 LMINFDV 187 M+NFD+ Sbjct: 329 NMVNFDI 335 >gi|241207161|ref|YP_002978257.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861051|gb|ACS58718.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 335 Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 114/187 (60%), Positives = 154/187 (82%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + LIK+R KFL++ PNALD+I RS+++GLP++DA+ +I + ++PV+SEF RVIE Q Sbjct: 149 VGFLIKRRQTKFLNELPNALDVITRSIKSGLPLNDAIRLIATEGTEPVKSEFLRVIEAQQ 208 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GLS+ ++ +RM +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKVQ Sbjct: 209 VGLSIPDACARMTIHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVQ 268 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH ++GV+A +M IGI VMR Sbjct: 269 ALSMEAKASAVIIGALPFIVATLVYMTSPNYMMILFTDPRGHFIMGVSAIWMSIGIFVMR 328 Query: 181 LMINFDV 187 M+NFD+ Sbjct: 329 NMVNFDI 335 >gi|116249985|ref|YP_765823.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] gi|115254633|emb|CAK05707.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] Length = 335 Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 114/187 (60%), Positives = 154/187 (82%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + LIK+R KFL++FPNALD+I RS+++GLP++DA+ +I + ++PV+SEF RVIE Q Sbjct: 149 VGFLIKRRQTKFLNEFPNALDVITRSIKSGLPLNDAIRLIATEGTEPVKSEFLRVIEAQQ 208 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GLS+ ++ +RM +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV Sbjct: 209 VGLSIPDACARMTIHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVS 268 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH ++GV+A +M IGI VMR Sbjct: 269 ALSMEAKASAVIIGALPFIVATLVYMTSPNYMMILFTDPRGHFIMGVSAIWMSIGIFVMR 328 Query: 181 LMINFDV 187 M+NFD+ Sbjct: 329 NMVNFDI 335 >gi|295690794|ref|YP_003594487.1| type II secretion system F domain-containing protein [Caulobacter segnis ATCC 21756] gi|295432697|gb|ADG11869.1| Type II secretion system F domain protein [Caulobacter segnis ATCC 21756] Length = 325 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 88/186 (47%), Positives = 125/186 (67%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L + R KF + F +A+DIIVR +++GLP+ D + +I +S +P+ EFR + E Sbjct: 139 LSILAQGRIRKFTEAFSDAIDIIVRGIKSGLPLHDCLRIIGQESPEPLAGEFRMLTENVA 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L ++ +M MP E+ FF+ V+++Q + GGNL+EAL NLS +LR RK MK K++ Sbjct: 199 MGVPLDAALDKMHERMPTNELRFFAIVLAIQQKTGGNLAEALGNLSTVLRSRKMMKEKIK 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EA ASA IIG+LP V L+ TSP YM L DPRGH++L AA +M IG++VMR Sbjct: 259 ALSAEAVASALIIGALPPGVIVLISVTSPAYMQPLFTDPRGHLMLLAAAIWMGIGVLVMR 318 Query: 181 LMINFD 186 MINF Sbjct: 319 KMINFK 324 >gi|170750193|ref|YP_001756453.1| type II secretion system protein [Methylobacterium radiotolerans JCM 2831] gi|170656715|gb|ACB25770.1| type II secretion system protein [Methylobacterium radiotolerans JCM 2831] Length = 325 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 94/186 (50%), Positives = 130/186 (69%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++HL KR AKF + PNA+D++VR +R G+PV D ++ ++ +PVRSEFR V+ETQ Sbjct: 139 LRHLRLKRIAKFNKELPNAVDVVVRGIRTGIPVGDCFRMVSREAEEPVRSEFRTVVETQA 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GLSL E+ +R+ +P EV+FF+ VI++Q Q GGNLSEAL NLS +LRDR M+ KVQ Sbjct: 199 MGLSLGEACTRLFERVPTAEVNFFAIVINIQQQSGGNLSEALNNLSTVLRDRAKMRGKVQ 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA II LPF V+ + TSP Y+++L G + L AA +M IGI ++ Sbjct: 259 AMSMEAKASASIIACLPFAVAGITALTSPDYISLLWTTDTGKIALVGAAIWMSIGIFTIK 318 Query: 181 LMINFD 186 MI F+ Sbjct: 319 KMIAFE 324 >gi|86147460|ref|ZP_01065772.1| Flp pilus assembly protein TadB [Vibrio sp. MED222] gi|85834753|gb|EAQ52899.1| Flp pilus assembly protein TadB [Vibrio sp. MED222] Length = 321 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 58/187 (31%), Positives = 104/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ + R A+F + P ALDII R+++AG P+ + + + +P+ EF+ + Sbjct: 135 VQNRVTYRMARFEEQLPEALDIIRRALQAGQPLVQSFNEVGEEMPEPIGVEFKNTYNLLN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I +M P + FS+ + +Q + GGNLSE L +S +LR R ++ K++ Sbjct: 195 YGYDLRLAIMQMTERAPTVSMLAFSSAVMLQKETGGNLSENLQKVSEVLRARFKLERKIK 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E++ SAWI+ PF + + F +P Y+ L DPRG ++ + + IG + +R Sbjct: 255 TLSAESRLSAWILTLSPFVLFFGLKFVNPEYIEPLYTDPRGISMVSIGVILLAIGALWIR 314 Query: 181 LMINFDV 187 +IN ++ Sbjct: 315 KIINIEI 321 >gi|75674495|ref|YP_316916.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255] gi|74419365|gb|ABA03564.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255] Length = 324 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 92/186 (49%), Positives = 132/186 (70%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R FL P+A+D+IVR ++AGLP+ +++ V+ S +P++SEF +IETQ Sbjct: 138 LGFLKKRRETAFLRALPDAVDVIVRGIKAGLPLFESLKVVAADSPEPLKSEFAAIIETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ SR+ MP+ E +FF VI++Q + GGNLSEAL NLS++LRDRK M K++ Sbjct: 198 IGMPLGEACSRLYERMPVPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIK 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY ++P Y+ +L P G ++L +A +M GI+VM+ Sbjct: 258 AVSMEAKASAAIIGSLPPIVMLLVYLSTPDYIALLWTHPTGRLMLAGSALWMTAGILVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|300021858|ref|YP_003754469.1| type II secretion system protein F [Hyphomicrobium denitrificans ATCC 51888] gi|299523679|gb|ADJ22148.1| Type II secretion system F domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 332 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 89/186 (47%), Positives = 128/186 (68%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R AKF NA+D++VR V++GLP+++ + VI +S +P+ EFR V+E Q Sbjct: 146 VAKLTKRRQAKFTSHLANAIDVVVRGVKSGLPLNECLQVIARESPEPLAGEFRSVMEQQR 205 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L++++ RM MPL EV F + VI++Q Q GGNLSEAL+NLS +LRDR+ + KV+ Sbjct: 206 LGVPLADALDRMYDRMPLAEVRFLTIVIAIQQQAGGNLSEALSNLSGVLRDRQMLALKVK 265 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EAKASA ++ SLP V +VY +SPGYM L G ++ + A +M IG++VM+ Sbjct: 266 ALSAEAKASAMVLASLPPGVMFMVYMSSPGYMMPLFTTTPGRFMMALGATWMTIGVLVMK 325 Query: 181 LMINFD 186 MINF Sbjct: 326 KMINFK 331 >gi|78186532|ref|YP_374575.1| TadB protein [Chlorobium luteolum DSM 273] gi|78166434|gb|ABB23532.1| TadB protein [Chlorobium luteolum DSM 273] Length = 322 Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 57/187 (30%), Positives = 108/187 (57%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L +R F D P ALD I R++RAG ++ A+ ++ + +P+ EF+ V + Sbjct: 136 LMQLADRRLRAFEDKLPEALDHISRALRAGHSLAPAMGMVGQEFGEPIGYEFKIVFDEIG 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ E+I R+ M +++FF +++Q + GGNL+E L+R +R R ++ K++ Sbjct: 196 FGIPFKEAIGRLAERMQSTDLNFFVISLTIQHETGGNLTELFDGLARTIRHRIKLRGKIR 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E +AS W++GS+PF + ++ +P Y+++L RG+ L+ + A M +G +V++ Sbjct: 256 TLSSEGRASGWVLGSMPFVLMMVLSLINPEYISLLWTTSRGNNLMLIGAGLMSVGFVVLK 315 Query: 181 LMINFDV 187 ++ V Sbjct: 316 RIVQIKV 322 >gi|110632960|ref|YP_673168.1| type II secretion system protein [Mesorhizobium sp. BNC1] gi|110283944|gb|ABG62003.1| type II secretion system protein [Chelativorans sp. BNC1] Length = 338 Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 88/186 (47%), Positives = 136/186 (73%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + K+R +F ++F NA+D+IVR +++GLPV D + +I ++ +PV+SEF +++ Q Sbjct: 152 VASRRKRRFKQFTNEFSNAVDVIVRGLKSGLPVGDCLRIIAAEAQEPVKSEFVAIVQDQT 211 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+SL E++ R+ +PL E +FF+ V+ +QS+ GG+L+EAL NLS++LR+RK M AK++ Sbjct: 212 LGISLDEAVQRLWERVPLAEANFFAIVVGLQSRTGGSLAEALGNLSKVLRERKKMSAKIR 271 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S EAK+SA IIG+LPF VS +Y TSP YM++L + G ++L A +M +GI+VMR Sbjct: 272 AMSSEAKSSAGIIGALPFFVSAAIYLTSPDYMSLLFSTLTGKLVLAGCALWMGMGILVMR 331 Query: 181 LMINFD 186 MINFD Sbjct: 332 KMINFD 337 >gi|225181995|ref|ZP_03735427.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] gi|225167280|gb|EEG76099.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] Length = 319 Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 55/186 (29%), Positives = 101/186 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ KR KF D +AL I+ S+RAG A+ + + P+ +EF R ++ Sbjct: 133 LKNAKMKRLQKFNDQLGDALGIMSNSLRAGFSFLQAMDSLSKELPPPISTEFGRALKEMR 192 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG E+++ M + ++ T +++Q Q+GGNL+E L N+ + +R MK +++ Sbjct: 193 LGTPTEEALANMTERIRSDDLDLIVTAVNIQRQVGGNLAEILDNIGNTISERVRMKGEIK 252 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + + S I+ LP + ++ +P Y+ +L P G +L+G A LIGIM+++ Sbjct: 253 TLTAQGRISGTIVALLPVFLVGVISVMNPSYIGLLFTHPLGLILIGGAVISELIGIMLIK 312 Query: 181 LMINFD 186 +IN + Sbjct: 313 KVINIE 318 >gi|325673437|ref|ZP_08153128.1| type II secretion system protein [Rhodococcus equi ATCC 33707] gi|325555458|gb|EGD25129.1| type II secretion system protein [Rhodococcus equi ATCC 33707] Length = 623 Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 104/186 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + +R A F D ++L ++ ++RAG + A+ + ++ P EF R++ Sbjct: 437 LRVMAGRRRAAFADQLDDSLQLLASNLRAGHSMLRALDSLSREAEVPTSEEFARIVNETR 496 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G L+ES+ + R M + ++ + I++ ++GG+L+E L + +R+R ++ +V+ Sbjct: 497 VGRDLNESLDDVARRMRSDDFNWIAQAIAINREVGGDLAEVLDQVGNTIRERNQIRRQVK 556 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ E K SA+++ +LPF ++ + ++P Y++ L G++++ V + +G + M Sbjct: 557 ALAAEGKLSAYVLMALPFGLTAFLLVSNPDYLSKLTGSAIGYVMIAVGLVMLTVGGLWMN 616 Query: 181 LMINFD 186 +++ Sbjct: 617 KVVSVK 622 >gi|219883049|ref|YP_002478213.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] gi|219862055|gb|ACL42396.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] Length = 309 Score = 124 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 48/186 (25%), Positives = 99/186 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L KR KF D ++L ++ +RAG + AV + Q+ P EF R++ Sbjct: 123 LSFLAGKRRKKFADQLDDSLQLLSGGLRAGHSLQRAVDAVSQQAPSPTAEEFSRIMNETR 182 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G L++++ + M ++ S+ S I + ++GG+L++ L + R +R+R ++ +V+ Sbjct: 183 IGRDLTDAMDQTAERMKSEDFSWVSQAIGIHREVGGDLADVLDQVGRTIRERNQIQRQVK 242 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E K SA+++ +LP + ++ SP Y+ + P G ++ M +G + ++ Sbjct: 243 ALSAEGKMSAYVLMALPVLIIGVLAIISPSYIVSFGSSPLGWGMVAGGILMMTVGGLWLK 302 Query: 181 LMINFD 186 +++F Sbjct: 303 KIVSFK 308 >gi|312139258|ref|YP_004006594.1| type ii secretion system integral membrane subunit [Rhodococcus equi 103S] gi|311888597|emb|CBH47909.1| putative type II secretion system integral membrane subunit [Rhodococcus equi 103S] Length = 622 Score = 124 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 104/186 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + +R A F D ++L ++ ++RAG + A+ + ++ P EF R++ Sbjct: 436 LRVMAGRRRAAFADQLDDSLQLLASNLRAGHSMLRALDSLSREAEVPTSEEFARIVNETR 495 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G L+ES+ + R M + ++ + I++ ++GG+L+E L + +R+R ++ +V+ Sbjct: 496 VGRDLNESLDDVARRMRSDDFNWIAQAIAINREVGGDLAEVLDQVGNTIRERNQIRRQVK 555 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ E K SA+++ +LPF ++ + ++P Y++ L G++++ V + +G + M Sbjct: 556 ALAAEGKLSAYVLMALPFGLTAFLLVSNPDYLSKLTGSAIGYVMIAVGLVMLTVGGLWMN 615 Query: 181 LMINFD 186 +++ Sbjct: 616 KVVSVK 621 >gi|218710399|ref|YP_002418020.1| Flp pilus assembly protein TadB [Vibrio splendidus LGP32] gi|218323418|emb|CAV19595.1| Flp pilus assembly protein TadB [Vibrio splendidus LGP32] Length = 321 Score = 124 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 58/187 (31%), Positives = 106/187 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ + R A+F + P ALDII R+++AG P+ + + + DP+ +EF+ + Sbjct: 135 VQNRVSYRMARFEEQLPEALDIIRRALQAGQPLIQSFNEVGEELPDPIGAEFKNTYNLLN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I +M +P + FS+ + +Q + GGNLSE L +S +LR R ++ K++ Sbjct: 195 YGYDLRLAILQMAERVPTVSMLAFSSAVMLQKETGGNLSENLQKVSEVLRSRFKLERKIK 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E++ SAWI+ PF + + +P Y+ L NDPRG ++ V + IG + ++ Sbjct: 255 TLSAESRLSAWILTLSPFGLFFALKVANPDYIEPLYNDPRGVSMVSVGIVLLAIGALWIK 314 Query: 181 LMINFDV 187 +I+ ++ Sbjct: 315 RIISIEI 321 >gi|85713509|ref|ZP_01044499.1| type II secretion system protein [Nitrobacter sp. Nb-311A] gi|85699413|gb|EAQ37280.1| type II secretion system protein [Nitrobacter sp. Nb-311A] Length = 324 Score = 124 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 92/186 (49%), Positives = 132/186 (70%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R FL P+A+D+IVR ++AGLP+ +++ V+V S +P++SEF +IETQ Sbjct: 138 LGFLKQRRETAFLRALPDAVDVIVRGIKAGLPLFESLKVVVADSPEPLKSEFAAIIETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ SR+ MP+ E +FF VI++Q + GGNLSEAL NLS++LRDRK M K++ Sbjct: 198 VGMPLGEACSRLYERMPVPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIK 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S EAKASA IIGSLP V LVY ++P Y+ +L P G ++L +A +M GI+VMR Sbjct: 258 AVSTEAKASAAIIGSLPPIVMLLVYLSTPDYIALLWTHPTGRLMLAGSALWMSAGILVMR 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|83859361|ref|ZP_00952882.1| hypothetical protein OA2633_13190 [Oceanicaulis alexandrii HTCC2633] gi|83852808|gb|EAP90661.1| hypothetical protein OA2633_13190 [Oceanicaulis alexandrii HTCC2633] Length = 331 Score = 124 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 93/187 (49%), Positives = 128/187 (68%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + K R KF ++F +ALDIIVR V++GLP+++ + +I + PV+ EF+ ++E Sbjct: 145 LGMMRKGRQKKFTENFADALDIIVRGVKSGLPLNETLKIIAQEGEAPVKQEFQLLVEGLA 204 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ + E + RM R MPL E+SFF+TV+++Q + GGNL+EAL NLS +LR RK M+ KV Sbjct: 205 VGVDVEEGMRRMHRRMPLPELSFFTTVLAIQQKTGGNLAEALNNLSAVLRARKMMREKVS 264 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EAKASAWIIGSLP V +V SP YM L+ P GH LL +ML GI+VMR Sbjct: 265 ALSSEAKASAWIIGSLPPGVGVMVSIMSPDYMTPLLTTPMGHFLLLGGGVWMLTGILVMR 324 Query: 181 LMINFDV 187 MINF + Sbjct: 325 SMINFKM 331 >gi|254293218|ref|YP_003059241.1| type II secretion system protein [Hirschia baltica ATCC 49814] gi|254041749|gb|ACT58544.1| type II secretion system protein [Hirschia baltica ATCC 49814] Length = 331 Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats. Identities = 90/183 (49%), Positives = 121/183 (66%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R KF F + +D+IVR V++GLP+ + + +I +S P+ +EF+RVI+ +G + Sbjct: 149 ISARQKKFTQQFSDGIDVIVRGVKSGLPLIECLRIIASESPAPLGTEFKRVIDAIQMGTT 208 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + +S+S M MPL EV+FF VI +Q Q GGNLSEAL NLS +LR RK + KV+ALS Sbjct: 209 VEKSLSNMYNRMPLPEVNFFGIVIGIQQQSGGNLSEALGNLSEVLRSRKMLAEKVKALSS 268 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EAKASA IIG+LP V LVYF+SP Y+ +L P GH +L V A M GI VM+ M+ Sbjct: 269 EAKASAMIIGALPIAVMILVYFSSPDYITLLFTHPTGHFMLMVGAGLMGAGIFVMKQMMK 328 Query: 185 FDV 187 DV Sbjct: 329 LDV 331 >gi|121534345|ref|ZP_01666169.1| type II secretion system protein [Thermosinus carboxydivorans Nor1] gi|121307115|gb|EAX48033.1| type II secretion system protein [Thermosinus carboxydivorans Nor1] Length = 324 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 108/187 (57%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +++RT F D +AL +I S+R G ++ ++ + P+ +EF RV+ + Sbjct: 138 LRVKVERRTKAFNDQLGDALILIANSLRTGYSFLQSIEMVSREMLPPIATEFARVLREMN 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG++ E+++ + + + ++ T + +Q Q+GGNL+E L N++ +R R +K +++ Sbjct: 198 LGVTTEEALNNLAKRVDSDDLDLVVTAVLIQRQVGGNLAEVLENIAGTIRSRIKIKGEIK 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + + S IIG LP + ++Y +PGYM +L P G L+ A LIG++++R Sbjct: 258 TLTAQGRISGVIIGLLPVALGLVIYALNPGYMQILFTHPLGRALVAGAIVSQLIGVLLIR 317 Query: 181 LMINFDV 187 ++N DV Sbjct: 318 RIVNIDV 324 >gi|15887569|ref|NP_353250.1| components of type IV pilus [Agrobacterium tumefaciens str. C58] gi|15155106|gb|AAK86035.1| components of type IV pilus [Agrobacterium tumefaciens str. C58] Length = 334 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 109/187 (58%), Positives = 151/187 (80%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L+K+R KFL++FPNALD++ RS+++GLP++DAV +I +PV++EF+RV++ Q Sbjct: 148 LAFLLKRRQKKFLEEFPNALDVMCRSIKSGLPLNDAVRLIASDGQEPVKTEFQRVVDAQQ 207 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ + + I RM+ MPL EVSFFS VI++Q+Q GGNLSEAL+NLSR+LRDR+ M+AKV Sbjct: 208 VGIGIPQGIERMMLTMPLFEVSFFSIVINIQAQAGGNLSEALSNLSRVLRDRRKMRAKVN 267 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASA IIG+LPF V LV+FTSP Y+++L D RGH++LG +A +MLIGI +MR Sbjct: 268 ALSMEAKASAVIIGALPFIVMLLVHFTSPDYLSILFTDTRGHLILGASAIWMLIGIFIMR 327 Query: 181 LMINFDV 187 MINFD+ Sbjct: 328 QMINFDI 334 >gi|82703470|ref|YP_413036.1| type II secretion system protein [Nitrosospira multiformis ATCC 25196] gi|82411535|gb|ABB75644.1| type II secretion system protein [Nitrosospira multiformis ATCC 25196] Length = 323 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 57/184 (30%), Positives = 102/184 (55%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +KR K P +D++ R+++AG S A+ + +P EFR + + G+ Sbjct: 140 AKRKRLEKIERQLPEVIDLMARALKAGHAFSGALQMASTDGPEPAADEFRLTFDEINFGV 199 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S+ +++ + +P+ ++ +F + +Q + GGNL+E L +S ++R R + K++ LS Sbjct: 200 SVQDALMNLATRVPITDLRYFVIAVLIQRESGGNLAELLDKISGLIRARLTLLGKIRVLS 259 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAWI+ LPF + ++ +PG++ VL DP G M++G A M+IGI VM +I Sbjct: 260 AEGRLSAWILSCLPFATALMINLVNPGFLTVLWTDPIGVMMVGTALGMMVIGIFVMSRII 319 Query: 184 NFDV 187 V Sbjct: 320 KIRV 323 >gi|16127171|ref|NP_421735.1| hypothetical protein CC_2941 [Caulobacter crescentus CB15] gi|221235972|ref|YP_002518409.1| TadB-like pilus assembly protein [Caulobacter crescentus NA1000] gi|7208429|gb|AAF40196.1|AF229646_8 TadB [Caulobacter crescentus CB15] gi|13424567|gb|AAK24903.1| hypothetical protein CC_2941 [Caulobacter crescentus CB15] gi|220965145|gb|ACL96501.1| TadB-related pilus assembly protein [Caulobacter crescentus NA1000] Length = 325 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 89/186 (47%), Positives = 125/186 (67%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K RT KF + F +A+DIIVR +++GLPV D + +I + +P+ EFR + E Sbjct: 139 LGFLAKGRTQKFTEAFADAVDIIVRGIKSGLPVHDCLKIIGKECPEPLAGEFRILTENVA 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ + ++ +M MP E+ FF+ V+++Q + GGNL+EAL NLS +LR RK MK K++ Sbjct: 199 MGVPMDAALEKMYERMPTNELRFFAIVLAIQQKTGGNLAEALGNLSAVLRSRKLMKEKIK 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EA ASA+IIG LP V TL+ TSP YM + DPRGH++L +A +M IGI VMR Sbjct: 259 ALSAEAVASAFIIGCLPPGVVTLISVTSPAYMAPMFTDPRGHLMLLASAIWMSIGIFVMR 318 Query: 181 LMINFD 186 MINF Sbjct: 319 NMINFK 324 >gi|118589707|ref|ZP_01547112.1| hypothetical protein SIAM614_04685 [Stappia aggregata IAM 12614] gi|118437793|gb|EAV44429.1| hypothetical protein SIAM614_04685 [Stappia aggregata IAM 12614] Length = 340 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 89/186 (47%), Positives = 132/186 (70%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + K+R FL++ PN +DIIVR V+AGLP+SD + V+ ++ DPV +EFR++ ETQ Sbjct: 154 VASKRKRRFNAFLEELPNGVDIIVRGVKAGLPLSDCIKVVAREARDPVATEFRKITETQI 213 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+SL++++ ++ +PL E +FF+ V+++Q + GG L+EAL NLS++LR RK MK K++ Sbjct: 214 MGISLADAVGKLPERVPLPEANFFAIVVAIQQKAGGGLAEALNNLSKVLRGRKAMKRKIK 273 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EAK+SA IIGSLPF V ++Y SP Y+ VL G++++ +M GIMVMR Sbjct: 274 ALSAEAKSSAGIIGSLPFFVGGIMYLISPKYIMVLFETTAGNIIIAGGLFWMFCGIMVMR 333 Query: 181 LMINFD 186 MINFD Sbjct: 334 AMINFD 339 >gi|116671472|ref|YP_832405.1| type II secretion system protein [Arthrobacter sp. FB24] gi|116611581|gb|ABK04305.1| type II secretion system protein [Arthrobacter sp. FB24] Length = 316 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 54/186 (29%), Positives = 99/186 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R A+F + L ++ +RAG V A+ + ++S+P +EF RV+ Sbjct: 130 LSFLTQRRRARFEAQLGDTLTMVSGGLRAGHSVLRAIDAVAQEASEPTATEFSRVVNETR 189 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG L +S++ + M ++ ++ + I + ++GG+L+E + +R+R +K V+ Sbjct: 190 LGRDLQDSLNDVSLRMKSEDFNWMAQAIEINREVGGDLAEVFDQVGETIRERSQIKGMVK 249 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E K SA I+ +LP + L+ +P Y L P G M+LG+A M IG + +R Sbjct: 250 ALSAEGKLSAIILMALPVLLFILIGLANPKYSGQLTGHPIGWMMLGIAVVMMTIGGLWIR 309 Query: 181 LMINFD 186 + + Sbjct: 310 KISDLK 315 >gi|325291655|ref|YP_004277519.1| components of type IV pilus [Agrobacterium sp. H13-3] gi|325059508|gb|ADY63199.1| components of type IV pilus [Agrobacterium sp. H13-3] Length = 334 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 107/187 (57%), Positives = 152/187 (81%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++K+R KFL++FPNALD++ RS+++GLP++DAV +I +PV++EF+RV++ Q Sbjct: 148 LGFILKRRQKKFLEEFPNALDVMCRSIKSGLPLNDAVRLIASDGQEPVKTEFQRVVDAQQ 207 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ + + I RM+ +PL EVSFFSTVI++Q+Q GGNLSEAL+NLS++LR+R+ M+AKV Sbjct: 208 VGIGIPQGIERMMLTVPLFEVSFFSTVINIQAQAGGNLSEALSNLSKVLRERRKMRAKVN 267 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASA IIG+LPF V LV+FTSP Y++VL D RGH++LGV+ +MLIGI +MR Sbjct: 268 ALSMEAKASAVIIGALPFIVMLLVHFTSPDYLSVLFTDMRGHIILGVSGLWMLIGIFIMR 327 Query: 181 LMINFDV 187 MINFD+ Sbjct: 328 QMINFDI 334 >gi|299532600|ref|ZP_07045989.1| type II secretion system protein [Comamonas testosteroni S44] gi|298719403|gb|EFI60371.1| type II secretion system protein [Comamonas testosteroni S44] Length = 329 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 61/187 (32%), Positives = 114/187 (60%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +R + P ALD+I R++RAG S ++ + + ++P+ EFR V + + Sbjct: 143 LQRKRLQRLKRMERQLPEALDLIARALRAGHAFSASLQMAGEELTEPIAGEFRLVHDEIN 202 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL ++++ + +P+ ++ +F + +Q + GGNL+E L+NLSR++R+R + AKV+ Sbjct: 203 YGTSLHQALTNLGERVPITDLRYFIVAVLIQRESGGNLTEMLSNLSRLIRERLKLHAKVR 262 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS + + SAWI+G +PF ++ L+ +P +M+ L DP G +L AA M+IG++++R Sbjct: 263 VLSADGRMSAWILGLMPFGLAALLNLMNPEFMHPLWTDPIGISILKWLAALMVIGLLLLR 322 Query: 181 LMINFDV 187 + V Sbjct: 323 RIARIRV 329 >gi|258621454|ref|ZP_05716488.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573] gi|258586842|gb|EEW11557.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573] Length = 232 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 57/187 (30%), Positives = 102/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I R ++F + P+ALDII R ++AG PV+ A + + + P+ EF+ + Sbjct: 46 LQKRIADRLSRFEEQLPDALDIIRRMLQAGQPVTQAFNEVGKEMAAPIGLEFKNTFNLLN 105 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + +I +M P + F++ + +Q + GGNLSE L + ++LR R + K++ Sbjct: 106 YGYDMRLAIMQMAERTPTVSMLAFASAVMLQKETGGNLSENLEKVGKVLRQRFKLTRKIK 165 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E++ SAWI+ PF + + F +P Y+ L D RG ++ V + G + +R Sbjct: 166 TLSAESRLSAWILVLSPFVLFIGLMFINPDYVTPLYQDARGMEMVSVGMVSLFFGAIWIR 225 Query: 181 LMINFDV 187 +I+F+V Sbjct: 226 KIISFEV 232 >gi|113866737|ref|YP_725226.1| flp pilus assembly protein TadB [Ralstonia eutropha H16] gi|113525513|emb|CAJ91858.1| flp pilus assembly protein TadB [Ralstonia eutropha H16] Length = 325 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 59/185 (31%), Positives = 104/185 (56%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 KR + +A+D+I R++RAG S A+ ++ + P+ EFR E + G Sbjct: 141 RQRAKRIKRMEAQLADAVDMISRALRAGHSFSGALGMVGQEMKAPIGPEFRTTFEEINYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++L E+++ + +P+ ++ +F + +Q + GGNL+E L + ++R+R + K++ L Sbjct: 201 VALDEAMTNLAIRVPVGDLRYFVIAVLIQRESGGNLAEILDTIGTMVRERLKLFDKIRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E K SAW++G LPF + L+ +PG+M VL DP G ++G A M G++ MR + Sbjct: 261 SAEGKMSAWVLGLLPFGTAGLILVVNPGFMKVLWEDPIGLRMIGGALVSMTFGVLWMRKI 320 Query: 183 INFDV 187 I V Sbjct: 321 IRIRV 325 >gi|304392380|ref|ZP_07374321.1| type II secretion system protein [Ahrensia sp. R2A130] gi|303295484|gb|EFL89843.1| type II secretion system protein [Ahrensia sp. R2A130] Length = 332 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 89/186 (47%), Positives = 125/186 (67%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K KKR A F FPNA+D+IVR +++GLP++D + +I S +PVR EFR++IE Sbjct: 146 VKRKRKKRFAAFTKTFPNAIDVIVRGIKSGLPLNDCLRIIATDSDEPVRGEFRKLIEAAQ 205 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ + E+ R+ + +P E +FFS VI++QS GGNLSEAL NLS++LR+R+ M K+Q Sbjct: 206 MGIPVPEACERLYKSIPTSETNFFSIVIAIQSSAGGNLSEALGNLSKVLRERRKMADKIQ 265 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A S EAK S IIG+LPF V+ +V+ TSP Y+ L GH +L A M GI+VM+ Sbjct: 266 AFSSEAKTSTMIIGALPFVVAIMVFATSPYYLVPLWTTTGGHKVLFFCAVSMGFGILVMK 325 Query: 181 LMINFD 186 MINF Sbjct: 326 KMINFK 331 >gi|94309585|ref|YP_582795.1| type II secretion system protein [Cupriavidus metallidurans CH34] gi|93353437|gb|ABF07526.1| flp pilus assembly protein TadB [Cupriavidus metallidurans CH34] Length = 325 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 60/185 (32%), Positives = 107/185 (57%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L KR + P+A+D+I R++RAG + A+ ++ + P+ EFR E + G Sbjct: 141 RLRTKRLKQMEVQLPDAVDMISRALRAGHSFAGALGMVGQEIKAPLGPEFRTTFEEINYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++L E+++ + +P+ ++ +F + +Q + GGNL+E L + ++R+R + K++ L Sbjct: 201 VALDEAMTNLAMRVPVGDLRYFVIAVLIQRESGGNLAEILDTIGTMVRERLKLFDKIRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAWI+G LPF + L+ +PG+M VL DP G ++G A M+ G++ MR + Sbjct: 261 SAEGRLSAWILGLLPFGTAGLIMVVNPGFMRVLWEDPIGWRMVGAAMTSMIFGVLWMRKI 320 Query: 183 INFDV 187 I V Sbjct: 321 IRIRV 325 >gi|220913394|ref|YP_002488703.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] gi|219860272|gb|ACL40614.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] Length = 310 Score = 122 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 94/186 (50%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L KR A F + L ++ +RAG + A+ +S P E RRVI Sbjct: 124 VGFLAGKRRAAFDGQLGDTLQLLSGGLRAGHSILRAIDAAAAESQKPTSEEMRRVITETS 183 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG L +++ M ++ + S I + ++GGNL++ L ++ +R+R +K ++ Sbjct: 184 LGRDLLAALNDTADRMKNEDFVWISQAIQINREVGGNLADVLDQVNETIRERAEIKGHIK 243 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ E K SA+I+ ++PF + ++ SP YMN + P G ++ + M +G + MR Sbjct: 244 ALAAEGKFSAYILIAMPFGIVAMLLAVSPTYMNSMFTHPLGWAMIVASFVLMTVGALWMR 303 Query: 181 LMINFD 186 +I+ Sbjct: 304 KIIDLK 309 >gi|114568974|ref|YP_755654.1| type II secretion system protein [Maricaulis maris MCS10] gi|114339436|gb|ABI64716.1| type II secretion system protein [Maricaulis maris MCS10] Length = 327 Score = 122 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 85/187 (45%), Positives = 126/187 (67%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L +R +F +F NALD+I R V++GLP+++ + ++ +S +PV++EF +++E Sbjct: 141 LGFLRGRRQKQFSGEFANALDVITRGVKSGLPLNECLKILSVESPEPVKTEFAKLVEGIA 200 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+SL + + RM MPL E++FF TV+ +Q + GGNL+E L NLS +LR RK M+ K+ Sbjct: 201 VGVSLPDGLDRMCERMPLPELNFFRTVLIIQQKTGGNLAETLGNLSVVLRSRKMMREKIG 260 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EAK+SA IIGSLP V +VY T+P YM + P G ++L +M IGIMVMR Sbjct: 261 ALSSEAKSSAAIIGSLPPGVMGIVYATTPSYMGQMFTHPTGQLMLLGGLTWMFIGIMVMR 320 Query: 181 LMINFDV 187 MINF + Sbjct: 321 GMINFKI 327 >gi|325964125|ref|YP_004242031.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans Sphe3] gi|323470212|gb|ADX73897.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans Sphe3] Length = 310 Score = 122 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 55/186 (29%), Positives = 95/186 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L KR A F + L ++ +RAG + A+ +S P E RRVI Sbjct: 124 LGFLAGKRRAAFDSQLGDTLQLLSGGLRAGHSILRAIDAAAAESQKPTSEEMRRVITETS 183 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG L +++ M ++ + S I + ++GGNL++ L +R+R +K ++ Sbjct: 184 LGRDLLAALNDTAERMQNEDFVWISQAIQINREVGGNLADVLDQTGETIRERSEIKGHIK 243 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ E K SA+I+ ++PF + ++ SP YMN + + P G ++GV+ M IG + MR Sbjct: 244 ALAAEGKFSAYILIAMPFGIVAMLVAMSPTYMNSMFSHPLGWAMIGVSFVLMTIGALWMR 303 Query: 181 LMINFD 186 +I+ Sbjct: 304 KIIDLK 309 >gi|53723214|ref|YP_112199.1| hypothetical protein BPSS2197 [Burkholderia pseudomallei K96243] gi|126444529|ref|YP_001064083.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|126455490|ref|YP_001076996.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|167725255|ref|ZP_02408491.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei DM98] gi|167744182|ref|ZP_02416956.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 14] gi|167821381|ref|ZP_02453061.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 91] gi|167829723|ref|ZP_02461194.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 9] gi|226194129|ref|ZP_03789729.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|237509857|ref|ZP_04522572.1| putative membrane protein [Burkholderia pseudomallei MSHR346] gi|242313100|ref|ZP_04812117.1| type II secretion system protein [Burkholderia pseudomallei 1106b] gi|52213628|emb|CAH39682.1| putative membrane protein [Burkholderia pseudomallei K96243] gi|126224020|gb|ABN87525.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|126229258|gb|ABN92671.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|225933822|gb|EEH29809.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|235002062|gb|EEP51486.1| putative membrane protein [Burkholderia pseudomallei MSHR346] gi|242136339|gb|EES22742.1| type II secretion system protein [Burkholderia pseudomallei 1106b] Length = 325 Score = 122 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 61/185 (32%), Positives = 109/185 (58%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R K P+A D+I R++RAG S A++++ G+ ++P+ EFR + + G Sbjct: 141 RCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +SL E++ + +P+ ++ +F + +Q + GGNL+E L +++++R+R + K++ L Sbjct: 201 VSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E K SA I+ LPF + L+ +P +++VL DP G +L+GV A M GI+ MR + Sbjct: 261 SAEGKLSALILTLLPFGTAALLSIMNPDFISVLWEDPAGVLLVGVTIASMAFGILWMRHI 320 Query: 183 INFDV 187 I V Sbjct: 321 IRIRV 325 >gi|114798049|ref|YP_761687.1| secretion system protein [Hyphomonas neptunium ATCC 15444] gi|114738223|gb|ABI76348.1| secretion system protein [Hyphomonas neptunium ATCC 15444] Length = 339 Score = 122 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 90/187 (48%), Positives = 127/187 (67%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + LIK R K ++ F +ALDIIVR VR+GLP+++ + VI +S +P+R EF + Sbjct: 153 LNFLIKGRHTKMINQFADALDIIVRGVRSGLPLNECIRVIAKESPEPLRKEFLTFADNLA 212 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G L S++ + + +PLQE++FF+ V+ +QS+ GGNLSEAL NLS ++R RK M+ KV+ Sbjct: 213 MGAGLERSLAALYKRLPLQEINFFAIVLIIQSKAGGNLSEALHNLSTVIRSRKMMREKVK 272 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EAKASA IIGSLP V +V+ T+P Y+ L GH++L VA M GI VMR Sbjct: 273 ALSSEAKASAMIIGSLPIAVGVMVFLTTPDYIMTLFTTETGHVILVVAVGMMGSGITVMR 332 Query: 181 LMINFDV 187 M+NFD+ Sbjct: 333 NMMNFDM 339 >gi|134281818|ref|ZP_01768525.1| type II secretion system protein [Burkholderia pseudomallei 305] gi|167908137|ref|ZP_02495342.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei NCTC 13177] gi|134246880|gb|EBA46967.1| type II secretion system protein [Burkholderia pseudomallei 305] Length = 325 Score = 122 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 61/185 (32%), Positives = 109/185 (58%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R K P+A D+I R++RAG S A++++ G+ ++P+ EFR + + G Sbjct: 141 RCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +SL E++ + +P+ ++ +F + +Q + GGNL+E L +++++R+R + K++ L Sbjct: 201 VSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E K SA I+ LPF + L+ +P +++VL DP G +L+GV A M GI+ MR + Sbjct: 261 SAEGKLSALILTLLPFGTAALLSIMNPDFISVLWEDPAGMLLVGVTIASMAFGILWMRHI 320 Query: 183 INFDV 187 I V Sbjct: 321 IRIRV 325 >gi|56477521|ref|YP_159110.1| putative Flp pilus assembly protein [Aromatoleum aromaticum EbN1] gi|56313564|emb|CAI08209.1| putative Flp pilus assembly protein [Aromatoleum aromaticum EbN1] Length = 324 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 58/185 (31%), Positives = 100/185 (54%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + +F P ALD++ R++RAG A+ ++ + DP+ EFR + + + G Sbjct: 140 RARNQHMQRFELQLPEALDLMGRALRAGHAFPTAIKMVAEEMKDPIGGEFRILFDEMNYG 199 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + ++ + ++S+F + +Q GGNL+E L N+S+I+R R + +++ L Sbjct: 200 VPQQTAMLNLASRTDSTDLSYFVIAVLIQRDSGGNLAELLDNISKIVRARLKLYGEIRTL 259 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E K SAWI+G LPF + L+ +PG+M VL DP G + A M++G++ MR + Sbjct: 260 SAEGKLSAWILGCLPFATAALINIVNPGFMKVLWEDPAGINFIYGAMGMMVLGVVWMRKI 319 Query: 183 INFDV 187 I V Sbjct: 320 IRIRV 324 >gi|76818607|ref|YP_336474.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 1710b] gi|167851190|ref|ZP_02476698.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei B7210] gi|167899820|ref|ZP_02487221.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 7894] gi|167916484|ref|ZP_02503575.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 112] gi|167924341|ref|ZP_02511432.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei BCC215] gi|254187128|ref|ZP_04893643.1| type II secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|254263188|ref|ZP_04954053.1| type II secretion system protein [Burkholderia pseudomallei 1710a] gi|254296490|ref|ZP_04963946.1| type II secretion system protein [Burkholderia pseudomallei 406e] gi|76583080|gb|ABA52554.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 1710b] gi|157806462|gb|EDO83632.1| type II secretion system protein [Burkholderia pseudomallei 406e] gi|157934811|gb|EDO90481.1| type II secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|254214190|gb|EET03575.1| type II secretion system protein [Burkholderia pseudomallei 1710a] Length = 325 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 61/185 (32%), Positives = 109/185 (58%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R K P+A D+I R++RAG S A++++ G+ ++P+ EFR + + G Sbjct: 141 RCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +SL E++ + +P+ ++ +F + +Q + GGNL+E L +++++R+R + K++ L Sbjct: 201 VSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E K SA I+ LPF + L+ +P +++VL DP G +L+GV A M GI+ MR + Sbjct: 261 SAEGKLSALILTLLPFGTAALLSIMNPDFISVLWEDPAGVLLVGVTIASMAFGILWMRHI 320 Query: 183 INFDV 187 I V Sbjct: 321 IRIRV 325 >gi|296122168|ref|YP_003629946.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] gi|296014508|gb|ADG67747.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] Length = 321 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 104/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR +F P+A++++ R++R+G ++ + ++ + P+ FR ETQ+ Sbjct: 135 LSFRRKKRFKQFAKQLPDAMELMGRALRSGHSLASGLHLVCDEMPPPISQVFRSAYETQN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ + ++ ++ MP + FF T +++Q Q GG+L+E L +S ++R+R + VQ Sbjct: 195 LGVPVESALKESLKKMPNLDYKFFVTAVAIQRQTGGDLAEILDKISEVIRERFKILGTVQ 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ E + S ++ ++P + VY+ +P Y+ VL G ++ V ++G + ++ Sbjct: 255 ALTGEGRLSGAVLMAMPIAIFFAVYYLNPNYVMVLFTTDLGKKMIAVGIVMQILGAVAIK 314 Query: 181 LMINFDV 187 +I+ V Sbjct: 315 KIIDIKV 321 >gi|73542333|ref|YP_296853.1| type II secretion system protein [Ralstonia eutropha JMP134] gi|72119746|gb|AAZ62009.1| type II secretion system protein [Ralstonia eutropha JMP134] Length = 325 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 59/187 (31%), Positives = 108/187 (57%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L KR + P+A+D+I R++RAG S A+ ++ + P+ EFR E + Sbjct: 139 IMRLRAKRIQQMESQLPDAVDMIARALRAGHSFSGALGMVGQEMKAPIAPEFRTTFEEIN 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G++L E+++ + +P+ ++ +F + +Q + GGNL+E L + ++R+R + AK++ Sbjct: 199 YGIALDEAMTNLAIRVPVGDLRYFVIAVLIQRESGGNLAEILDTIGNMVRERLKLFAKIR 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + SAW++G LPF ++ +P +M VL DP G ++G A M++G++ MR Sbjct: 259 VLSAEGRMSAWVLGLLPFATGGMILVVNPDFMKVLWEDPIGLKMVGAAVGMMMLGVLWMR 318 Query: 181 LMINFDV 187 +I V Sbjct: 319 KIIRIRV 325 >gi|329847257|ref|ZP_08262285.1| bacterial type II secretion system protein F domain protein [Asticcacaulis biprosthecum C19] gi|328842320|gb|EGF91889.1| bacterial type II secretion system protein F domain protein [Asticcacaulis biprosthecum C19] Length = 337 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 81/186 (43%), Positives = 123/186 (66%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + R KF ++FPNA+DI+VR +++GLPV D + +I +S P+ EF R++E Sbjct: 151 LGMMATGRLKKFTEEFPNAMDILVRGIKSGLPVHDGLKIISKESPAPLGPEFLRLVENVG 210 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+S+ ++ +M +P E+ FF+ VI++Q++ GGNL+EAL NLS +LR RK M+ K++ Sbjct: 211 VGMSVEGALEKMSERIPSPELRFFTIVIAIQAKTGGNLAEALNNLSTVLRARKMMREKIK 270 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EA ASA IIG LP V ++ T P Y+ + DPRG ++L A +M +GI +MR Sbjct: 271 ALSSEAIASASIIGVLPPGVGVMISLTRPEYIGGMFTDPRGQIMLLGGAIWMALGIFMMR 330 Query: 181 LMINFD 186 MINF Sbjct: 331 KMINFK 336 >gi|149186258|ref|ZP_01864572.1| hypothetical protein ED21_31014 [Erythrobacter sp. SD-21] gi|148830289|gb|EDL48726.1| hypothetical protein ED21_31014 [Erythrobacter sp. SD-21] Length = 323 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 67/187 (35%), Positives = 118/187 (63%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + IKKRT +F F +A++++VR +R+GLPV++ + V+ + PV EF+ ++E Sbjct: 137 VGRAIKKRTNQFNVKFADAIELLVRGLRSGLPVTETLNVVSQEIPGPVGEEFKSIVERIK 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G ++ ES+ + + E +FF +++Q + GGNL+E L+NL+ +LR R MK K++ Sbjct: 197 IGRTMEESLQETADRLGIPEFNFFCITLAIQRETGGNLAETLSNLADVLRKRTQMKLKIK 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E+KASA+I+GSLPF V L+++ +P Y+ D R + +M IG+ +M Sbjct: 257 AMSSESKASAYIVGSLPFIVFGLIFWINPEYLGGFFTDDRLIVTGLGGLTWMGIGVFIMA 316 Query: 181 LMINFDV 187 M++F++ Sbjct: 317 KMVSFEI 323 >gi|311743552|ref|ZP_07717358.1| type II secretion system protein [Aeromicrobium marinum DSM 15272] gi|311312682|gb|EFQ82593.1| type II secretion system protein [Aeromicrobium marinum DSM 15272] Length = 314 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 94/187 (50%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K KR +F L ++ S+RAG A+ + P++ E R++ Sbjct: 128 VKMRTAKRRREFNAQLDGMLQMLASSMRAGQSFQQAMGSCARDADSPMQDELTRILNENR 187 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + S++ M ++ + + + + + GGNL+E + +++++RDR ++ KV Sbjct: 188 LGRDIIASMNDTAERMECEDFVWLAEAVELTRESGGNLNEIIDRVAQMIRDRSEIREKVH 247 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A + E + S++I+ SLP ++ F +PGY++ L + G L+G + I + MR Sbjct: 248 AYASEGRFSSYILMSLPLLIAVAYSFITPGYLDPLFSTGLGLALVGGSVVMYTIAFLWMR 307 Query: 181 LMINFDV 187 ++++ V Sbjct: 308 IIVDIKV 314 >gi|167648148|ref|YP_001685811.1| type II secretion system protein [Caulobacter sp. K31] gi|167350578|gb|ABZ73313.1| type II secretion system protein [Caulobacter sp. K31] Length = 325 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 87/186 (46%), Positives = 129/186 (69%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + K RT KF + F +A+DIIVR +++GLPV+D + +I + +P+ EFR ++E Sbjct: 139 VGMMAKARTKKFTEAFSDAIDIIVRGIKSGLPVNDCLKIIGKECPEPLAGEFRVLVENTG 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+S+ +++ RM MP E+ FF+ V+++Q++ GGNL+EAL NLS +LR RK M K++ Sbjct: 199 MGMSMDQALERMYERMPTNELRFFTIVLTIQAKTGGNLAEALGNLSTVLRARKLMGEKIK 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EA ASA+IIG+LP V L+ T+P YM + D RGH++L VAA +M +GI VMR Sbjct: 259 ALSAEAVASAFIIGALPPGVVILISVTAPTYMAPMFTDQRGHLMLMVAAFWMTVGIFVMR 318 Query: 181 LMINFD 186 MINF Sbjct: 319 KMINFK 324 >gi|239908017|ref|YP_002954758.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1] gi|239797883|dbj|BAH76872.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1] Length = 326 Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 57/185 (30%), Positives = 114/185 (61%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 KR A F P AL+++ R++RAG + + ++V + +DP+R EF+ +E + G Sbjct: 142 MRKDKRMADFERQLPEALELVGRALRAGHTFTSGMGMVVSEFADPIRVEFQTTLEEINFG 201 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + ++ ++ ++ + +++FF + +Q++ GGNL+E + N+S ++R+R +K ++Q L Sbjct: 202 MGVTTALDNLMDRVDCPDLNFFVVSVKIQNESGGNLAEIIGNISGLIRERFKLKGRIQVL 261 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + +AW++ LPF V+ ++ F +PGY+ +L DP G ++ A + +GI+V+R M Sbjct: 262 SAEGRMAAWVLCLLPFGVAAVIQFVNPGYLGLLFTDPMGRIMSYGVAGLITMGILVIRKM 321 Query: 183 INFDV 187 + +V Sbjct: 322 VRIEV 326 >gi|217424158|ref|ZP_03455657.1| type II secretion system protein [Burkholderia pseudomallei 576] gi|254192376|ref|ZP_04898815.1| type II secretion system protein [Burkholderia pseudomallei S13] gi|169649134|gb|EDS81827.1| type II secretion system protein [Burkholderia pseudomallei S13] gi|217392623|gb|EEC32646.1| type II secretion system protein [Burkholderia pseudomallei 576] Length = 330 Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 61/185 (32%), Positives = 109/185 (58%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R K P+A D+I R++RAG S A++++ G+ ++P+ EFR + + G Sbjct: 146 RCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYG 205 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +SL E++ + +P+ ++ +F + +Q + GGNL+E L +++++R+R + K++ L Sbjct: 206 VSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVL 265 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E K SA I+ LPF + L+ +P +++VL DP G +L+GV A M GI+ MR + Sbjct: 266 SAEGKLSALILTLLPFGTAALLSIMNPDFISVLWEDPAGVLLVGVTIASMAFGILWMRHI 325 Query: 183 INFDV 187 I V Sbjct: 326 IRIRV 330 >gi|260462612|ref|ZP_05810818.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] gi|259031518|gb|EEW32788.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] Length = 324 Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 62/186 (33%), Positives = 110/186 (59%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ KR KF P+ALD+IVRS+RAG P + A+ ++ + DP+ +EF V + Sbjct: 138 LRRARNKRIQKFAAQLPDALDMIVRSLRAGHPTTVAIGLVAREMPDPLGTEFGIVSDEIT 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 GLSL +++ ++ + + + + S +S+Q++ GGNL+E LANLS +LR+R+ ++ K++ Sbjct: 198 FGLSLEQAVRKLSQRVGFEGLHLLSVSLSIQAKTGGNLTEILANLSSVLRERRKLRMKIK 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + SAWII P + ++ +P + + + P + + + L+G +M Sbjct: 258 ALSAEGRMSAWIISLFPVVMFGILLLVAPKFYGEVWDSPLILPVFVIFGLWALLGDFIMY 317 Query: 181 LMINFD 186 M+NFD Sbjct: 318 RMVNFD 323 >gi|304320651|ref|YP_003854294.1| hypothetical protein PB2503_05392 [Parvularcula bermudensis HTCC2503] gi|303299553|gb|ADM09152.1| hypothetical protein PB2503_05392 [Parvularcula bermudensis HTCC2503] Length = 330 Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 85/187 (45%), Positives = 128/187 (68%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR KF ++F NA+D+IVR V++GLPV++ + +I + PV+ EF+ ++E Q Sbjct: 144 LYQTRRKRQKKFENEFSNAIDVIVRGVKSGLPVNECLKIISRDAQSPVKEEFQLLVEGQR 203 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GL+L +S+ R+ MP+ +V+FF+ V+ +Q Q GGNL++AL NLS +LR RK M K+ Sbjct: 204 IGLTLEQSLERLYNRMPISDVNFFAIVLVIQQQTGGNLADALGNLSTVLRSRKTMLGKIA 263 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASA I+ ++PF VS LVY +P Y+ L + G +L A +MLIGI+VM+ Sbjct: 264 ALSMEAKASAAILAAMPFFVSGLVYLAAPDYIAPLFSTQTGQFMLMGAGMWMLIGIVVMK 323 Query: 181 LMINFDV 187 MI+ V Sbjct: 324 NMISIKV 330 >gi|317123666|ref|YP_004097778.1| type II secretion system F domain [Intrasporangium calvum DSM 43043] gi|315587754|gb|ADU47051.1| Type II secretion system F domain [Intrasporangium calvum DSM 43043] Length = 652 Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 96/172 (55%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P +L ++ S+R+G + A+ I + DP+ EF R + +G +++++ RM Sbjct: 481 LPQSLMLVSTSLRSGFGLPQALDSIAKDAPDPLAKEFSRGLAETRIGTDIADALERMADR 540 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 M + + I +Q ++GGNL+E L +R LR+R+++ +V+ALS E + SA+I+ + Sbjct: 541 MGSRSMRMAVMAIRIQREVGGNLAETLETTARTLRERESLHRQVRALSAEGRLSAYILIA 600 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 LP + + + + GY+++L P G M+L ++ GI MR ++ +V Sbjct: 601 LPIGLFFYMMWVNYGYISLLWTHPLGLMMLVGGIVLLIGGIFWMRQVVKIEV 652 >gi|149911402|ref|ZP_01900020.1| hypothetical Flp pilus assembly protein TadB [Moritella sp. PE36] gi|149805510|gb|EDM65515.1| hypothetical Flp pilus assembly protein TadB [Moritella sp. PE36] Length = 321 Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 59/187 (31%), Positives = 100/187 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I KR + FP ALDI+ R ++AG SD++ ++ + + EF+ + + Sbjct: 135 LNRNINKRMERIEQQFPEALDILKRGLQAGYAFSDSIKLVYEELEGELSDEFKLMFNRIN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + ++ V+ +P F + +S+ + GGNL+E + NLSRI+R R K +V+ Sbjct: 195 FGNDVHTALLSFVKRVPSTSAMAFCSSVSIHKETGGNLAENIDNLSRIIRQRFTFKRRVK 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + S W++ PF + ++Y +SP Y ++LIN P G LL ML+GI + Sbjct: 255 TLSAEGRLSGWVLVLTPFVLFAVLYISSPDYASILINTPEGLNLLKWGGIGMLLGIWWIS 314 Query: 181 LMINFDV 187 +I +V Sbjct: 315 KLIKIEV 321 >gi|317122044|ref|YP_004102047.1| type II secretion system F domain [Thermaerobacter marianensis DSM 12885] gi|315592024|gb|ADU51320.1| Type II secretion system F domain [Thermaerobacter marianensis DSM 12885] Length = 401 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 100/187 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R F P+AL ++ ++++G A V+ + P+ EF +++ Sbjct: 215 VARRYRQRLQAFDAQLPDALTLMANALKSGYSFLQAADVVAREMPAPIAEEFGWLVKETR 274 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + + L ++++ ++ +P ++ T + +Q Q+GGNL+ L + +R+R ++ +++ Sbjct: 275 VNIPLEDALANLLDRVPSPDLDLVVTAVLIQKQVGGNLAGVLERTAETIRERVRLQGQIR 334 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + + S WI+GSLP + L+ +P Y+ L+ P G MLLG + G++V+R Sbjct: 335 TLTAQGRLSGWIVGSLPVALLVLLSAMNPAYLQPLLATPVGWMLLGAGVVMEVAGVLVIR 394 Query: 181 LMINFDV 187 +I D+ Sbjct: 395 ALIRVDI 401 >gi|168702878|ref|ZP_02735155.1| secretion system protein TadB [Gemmata obscuriglobus UQM 2246] Length = 319 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 103/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + R F P+A++++ R++RAG ++ + V+ + P+ EF RV E Q+ Sbjct: 133 LHMKRSSRLKAFAAQLPDAMELVARALRAGHSLAAGMHVVAEEMPAPICKEFGRVYEEQN 192 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L E++ M +P ++ FF T +++Q Q GG+L+E L + I+R+R + +V+ Sbjct: 193 LGIPLEEALKGMCDRVPNLDLKFFVTSVAIQRQTGGDLAEILDRIGHIIRERFKILGQVK 252 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ E + S ++ +LP + ++ +T P Y+ +L D G + A MLIG ++ Sbjct: 253 ALTAEGRLSGVVLIALPIGLFVMMLWTKPDYVEMLWKDDLGIKMSIGAIVLMLIGSYAIK 312 Query: 181 LMINFDV 187 +++ V Sbjct: 313 KIVDIKV 319 >gi|78186666|ref|YP_374709.1| TadB protein [Chlorobium luteolum DSM 273] gi|78166568|gb|ABB23666.1| TadB protein [Chlorobium luteolum DSM 273] Length = 322 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 60/176 (34%), Positives = 103/176 (58%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 F D P ALD I RS+RAG ++ A+ ++ + DP+ EF+ V + G+ ++I Sbjct: 147 FGDKLPEALDYISRSMRAGHSLTSAIGMLGTEFRDPIGHEFKTVFDEIGFGIPFKDAIGE 206 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + +++FF + +Q + GGNL+E L LS +R R ++ K++ LS E +ASAW Sbjct: 207 LADRVQSTDLNFFVISLQIQHETGGNLTELLDGLSNTIRQRIKLRGKIRTLSSEGRASAW 266 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 ++GS+PF + ++ +PGY++VL P GH L A M +G +++ ++NF V Sbjct: 267 VLGSMPFALVAILTLINPGYISVLWTTPEGHKLTLSALGLMSVGFFLLKRIVNFKV 322 >gi|254506705|ref|ZP_05118845.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16] gi|219550286|gb|EED27271.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16] Length = 322 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 63/187 (33%), Positives = 103/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I R A F + P ALDI+ R ++AG PV+ A + + DP+ +EF+ + Sbjct: 136 LNKRISDRLASFEEQLPEALDIMRRMLQAGQPVTQAFNEVGNEMPDPIGTEFKNTFNLLN 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + +I +M P + FS+ + +Q + GGNLSE L +S++LR R ++ K++ Sbjct: 196 FGYDMRMAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSKVLRSRFKLQRKIK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E++ SAWI+ PF + + F +P Y+ L DPRG L+ + IG + +R Sbjct: 256 TLSAESRLSAWILVLSPFLLFLFLTFINPSYVEPLYTDPRGMTLVSGGIISLFIGSIWIR 315 Query: 181 LMINFDV 187 +INF+V Sbjct: 316 NIINFEV 322 >gi|254182576|ref|ZP_04889170.1| type II secretion system protein [Burkholderia pseudomallei 1655] gi|184213111|gb|EDU10154.1| type II secretion system protein [Burkholderia pseudomallei 1655] Length = 330 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 61/185 (32%), Positives = 109/185 (58%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R K P+A D+I R++RAG S A++++ G+ ++P+ EFR + + G Sbjct: 146 RCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYG 205 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +SL E++ + +P+ ++ +F + +Q + GGNL+E L +++++R+R + K++ L Sbjct: 206 VSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVL 265 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E K SA I+ LPF + L+ +P +++VL DP G +L+GV A M GI+ MR + Sbjct: 266 SAEGKLSALILTLLPFATAALLSIMNPDFISVLWEDPAGVLLVGVTIASMAFGILWMRHI 325 Query: 183 INFDV 187 I V Sbjct: 326 IRIRV 330 >gi|99082190|ref|YP_614344.1| type II secretion system protein [Ruegeria sp. TM1040] gi|99038470|gb|ABF65082.1| hypothetical protein TM1040_2350 [Ruegeria sp. TM1040] Length = 322 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 98/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR AK + P+ ++++VRS+R G P S AV ++ + DP+ +EF + + Sbjct: 136 VNSKAKKRMAKIEEQLPDGVELMVRSLRVGHPFSSAVQIVAKEVEDPLATEFGIIADECA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+ Sbjct: 196 YGRDVGEALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ S + P V + P Y + +I+ P + + I VMR Sbjct: 256 AITAEAQWSGKFLSGFPLFVLAGTLVSDPHYYDNVIDHPWFMPACFIVGGMLTANIFVMR 315 Query: 181 LMINFDV 187 + N V Sbjct: 316 KLTNIQV 322 >gi|239814536|ref|YP_002943446.1| type II secretion system protein [Variovorax paradoxus S110] gi|239801113|gb|ACS18180.1| type II secretion system protein [Variovorax paradoxus S110] Length = 330 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 64/187 (34%), Positives = 110/187 (58%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H +R A P+ALD++ R++RAG + +V +I + S+P+ EFR V + Sbjct: 144 LNHRRSRRLAHLERQLPDALDLVTRALRAGHSFASSVQMIGDEMSEPIAGEFRMVADEVG 203 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+SL ++++ M +PL ++ +F + +Q GGNL+E L NLSR++RDR + A+V+ Sbjct: 204 FGVSLQQALTNMSERVPLTDLRYFVVSVLIQRDSGGNLTEVLGNLSRLIRDRLKLLARVR 263 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + SAWI+G +PF + L+ +P +M+ L DP G + M+IG +++R Sbjct: 264 VLSAEGRLSAWILGLMPFALVALLNAFNPEFMSPLWTDPIGITAVKYMLGLMVIGAVILR 323 Query: 181 LMINFDV 187 ++ V Sbjct: 324 KIVKIRV 330 >gi|323499917|ref|ZP_08104876.1| Flp pilus assembly protein TadB [Vibrio sinaloensis DSM 21326] gi|323315158|gb|EGA68210.1| Flp pilus assembly protein TadB [Vibrio sinaloensis DSM 21326] Length = 322 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 63/187 (33%), Positives = 103/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I R ++F + P ALDI+ R ++AG PV+ A + + DP+ +EF+ + Sbjct: 136 LNKRISDRLSQFEEQLPEALDIMRRMLQAGQPVTQAFNEVGNEMPDPIGTEFKNTFNLLN 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + +I +M P + FS+ + +Q + GGNLSE L +SR+LR R ++ K++ Sbjct: 196 FGYDMRMAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSRVLRSRFKLQRKIK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E++ SAWI+ PF + + +P Y+ L DPRG L+ + IG M +R Sbjct: 256 TLSAESRLSAWILVLSPFLLFLFLSIINPTYVEPLYTDPRGMTLVSGGIVSLFIGSMWIR 315 Query: 181 LMINFDV 187 +INF+V Sbjct: 316 NIINFEV 322 >gi|307943149|ref|ZP_07658494.1| type II secretion system protein [Roseibium sp. TrichSKD4] gi|307773945|gb|EFO33161.1| type II secretion system protein [Roseibium sp. TrichSKD4] Length = 340 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 88/186 (47%), Positives = 132/186 (70%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR F+++ PN +DIIVR V+AGLP+ D V V+ ++ DPV +EF +++ETQ Sbjct: 154 INRRRKKRFTAFMEELPNGVDIIVRGVKAGLPLGDCVRVVSTEAKDPVSTEFAKILETQK 213 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+SL+E+ ++ +PL E +FF+ V+++Q GG LSEAL NLSR+LR RK +K K+ Sbjct: 214 MGVSLAEAFMKLPERVPLPEANFFAIVVAIQQSSGGGLSEALNNLSRVLRGRKALKRKIV 273 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EAK+SA IIG++P +S ++F +P Y+N+L+ GH+++ +MLIGI+VMR Sbjct: 274 ALSSEAKSSAGIIGAMPVLISLALFFIAPDYINILLTTTAGHIVIAGCITWMLIGILVMR 333 Query: 181 LMINFD 186 MINFD Sbjct: 334 QMINFD 339 >gi|27365113|ref|NP_760641.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6] gi|37680836|ref|NP_935445.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016] gi|320155496|ref|YP_004187875.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O] gi|27361259|gb|AAO10168.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6] gi|37199585|dbj|BAC95416.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016] gi|319930808|gb|ADV85672.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O] Length = 321 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 58/187 (31%), Positives = 101/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I R +F + P+ALDII R ++AG PV+ A + + + P+ EF+ + Sbjct: 135 LQKRITDRLNRFEEQLPDALDIIRRMLQAGQPVTQAFNEVGNEMAPPIGIEFKNTFNLLN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + +I +M P + FS+ + +Q + GGNLSE L + ++LR R + K++ Sbjct: 195 YGYDMRLAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVGKVLRQRFKLTRKIK 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +S E++ SAWI+ PF + + F +P Y+ L D RG L+ + + G + +R Sbjct: 255 TISAESRLSAWILVLSPFVLFVGLMFINPEYVKPLYQDERGMELVTMGIVSLFFGAIWIR 314 Query: 181 LMINFDV 187 +INF+V Sbjct: 315 NIINFEV 321 >gi|220922535|ref|YP_002497837.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] gi|219947142|gb|ACL57534.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] Length = 314 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 60/187 (32%), Positives = 107/187 (57%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 M +L ++R A F + P L+I+VRS+RAG P+ A + Q DP SE + Sbjct: 128 MYYLRRRRVAAFGEQLPELLEIMVRSLRAGHPLVVAFTLAAKQMPDPAGSEIGITADEIG 187 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + ++ + R + +++ FF+T +++Q+Q GGNL+E LA L+ +LR+R ++ +V+ Sbjct: 188 YGRDVGAALYNLYRRVGFEDLRFFATAVTIQAQTGGNLAEILARLATLLRERARLRQRVR 247 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + SA + PF ++ L+ +P Y + +P + L VA ++IG +V+ Sbjct: 248 ALSAEGRLSALALSLFPFLLAGLITLLNPDYYGSVWGNPLFDLALTVAGGMLIIGNIVLY 307 Query: 181 LMINFDV 187 ++NF + Sbjct: 308 RIVNFRI 314 >gi|221067369|ref|ZP_03543474.1| type II secretion system protein [Comamonas testosteroni KF-1] gi|220712392|gb|EED67760.1| type II secretion system protein [Comamonas testosteroni KF-1] Length = 329 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 62/187 (33%), Positives = 114/187 (60%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +R P ALD+I R++RAG S + + + S+P+ EFR V + + Sbjct: 143 LQRKRNQRLGLLERQIPEALDLIARALRAGHAFSAGLQMAGEELSEPIAGEFRLVHDEIN 202 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL ++++ + +P+ ++ +F + +Q + GGNL+E L+NLSR++R+R + AK++ Sbjct: 203 YGTSLQQALNNLGERIPITDLRYFIVAVLIQRESGGNLTEMLSNLSRLIRERLKLHAKIR 262 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + SAWI+G +PF ++ L+ F +P +M+ L DP G ++L A M+IG++++R Sbjct: 263 VLSSEGRMSAWILGLMPFALAALLNFVNPEFMSTLWTDPIGIVILQWLAGLMVIGMLMLR 322 Query: 181 LMINFDV 187 ++ V Sbjct: 323 RIVRIRV 329 >gi|261856882|ref|YP_003264165.1| type II secretion system F domain protein [Halothiobacillus neapolitanus c2] gi|261837351|gb|ACX97118.1| Type II secretion system F domain protein [Halothiobacillus neapolitanus c2] Length = 284 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 47/185 (25%), Positives = 98/185 (52%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L ++R K P+ L ++ S+RAGL + A+ + + P+ EF V+ Q +G Sbjct: 100 WLKQRRIDKIQQQLPDGLMMVSGSMRAGLGFTAALESLARDTDPPLAQEFALVLREQRMG 159 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L +++ +P+Q+V+ F + +++ ++GGNL+E+L +L+ LR R M+ KV++L Sbjct: 160 VKLEDALLHFNDRVPVQDVTLFVSAVNISREVGGNLAESLTSLASTLRRRLIMEGKVKSL 219 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + + ++ +P + T + P M+ L + P G ++ VA +G + + Sbjct: 220 TAQGRLQGIVMALMPVGLLTFLTLAYPDTMHDLYHTPLGWGIIAVAVVMEYLGYRMSLKI 279 Query: 183 INFDV 187 + D+ Sbjct: 280 VTIDI 284 >gi|87312289|ref|ZP_01094387.1| secretion system protein TadB [Blastopirellula marina DSM 3645] gi|87284993|gb|EAQ76929.1| secretion system protein TadB [Blastopirellula marina DSM 3645] Length = 320 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 65/187 (34%), Positives = 108/187 (57%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + K R AKF P+AL++I R++RAG + ++ +S DP+ EF +V E Q+ Sbjct: 134 VHFKRKARLAKFGKQLPDALELISRALRAGHSLGAGFRLVSEESDDPIGREFAKVFEAQN 193 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+SL ++I+ M +P ++ FF T I +Q Q GG+L+E L + R++R R + +Q Sbjct: 194 LGVSLEDAITDMTERVPNLDLKFFGTAIILQRQTGGDLAEILDKIGRLVRQRLELFGTIQ 253 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ E + S ++ LP + ++ +PGY+ L DP G+ +L VA LIG V++ Sbjct: 254 ALTGEGRISGIVLLGLPPALFVALWRLNPGYVMTLFTDPLGNKMLAVAIVMQLIGAWVIQ 313 Query: 181 LMINFDV 187 +I+ V Sbjct: 314 KIIDIKV 320 >gi|303248307|ref|ZP_07334569.1| Type II secretion system F domain protein [Desulfovibrio fructosovorans JJ] gi|302490332|gb|EFL50244.1| Type II secretion system F domain protein [Desulfovibrio fructosovorans JJ] Length = 326 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 113/187 (60%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR +F P ALD++ R++RAG + + ++V + ++P+ SEFR +E + Sbjct: 140 IAMRKAKRMTEFERQLPEALDLVGRALRAGHTFTSGMGMVVSEFAEPISSEFRTTLEEIN 199 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ ++ ++ ++ + +++FF + +Q++ GGNL+E + N++ ++R+R +K +++ Sbjct: 200 FGMGVTVALDNLMDRVDCPDLNFFVISVKIQNETGGNLAEIIGNIASLIRERLKLKGRIR 259 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + +AW++ LPF V V +PGY+ +L +P G +L+ V M +G++V+R Sbjct: 260 VLSAEGRMAAWVLCLLPFFVCGAVQVLNPGYLGLLFTEPLGRILIYVVMGLMTLGVLVIR 319 Query: 181 LMINFDV 187 M+ +V Sbjct: 320 KMVRIEV 326 >gi|167842455|ref|ZP_02469139.1| Flp pilus assembly protein TadB [Burkholderia thailandensis MSMB43] Length = 325 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 60/185 (32%), Positives = 105/185 (56%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 H +R K P+ D I R++RAG S A++++ G+ ++P+ EFR + + G Sbjct: 141 HCRTRRLRKLERQLPDTCDTIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L E++ + +P+ ++ +F + +Q + GGNL+E L ++ ++R+R + KV+ L Sbjct: 201 VPLQEALLNLATRVPVPDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKVRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E K SA I+ LPF + L+ +P ++ VL DP G +L+G+ A M GI+ MR + Sbjct: 261 SAEGKLSALILTLLPFGTAGLLSVMNPDFIAVLWQDPAGILLVGMTIASMAFGILWMRHI 320 Query: 183 INFDV 187 I V Sbjct: 321 IRIRV 325 >gi|222111306|ref|YP_002553570.1| type II secretion system protein [Acidovorax ebreus TPSY] gi|221730750|gb|ACM33570.1| type II secretion system protein [Acidovorax ebreus TPSY] Length = 279 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 104/185 (56%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +L ++R AK ++ P+AL+++ S+R+G ++ A+ ++ ++ P E V+ Q LG Sbjct: 95 YLKRRREAKLIEQMPDALNMLAGSLRSGASLAIAMDLVATETPPPFSQELSLVLREQKLG 154 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +SL ++ + + L++V+ + I++ +GGNLSE L L+ LR + M+ K++AL Sbjct: 155 VSLEDAFESFAKRVNLEDVNLLVSAITISKDVGGNLSEVLERLASTLRAKAAMEGKIRAL 214 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + K ++G LP + +++ P M L + G ++ V A +++G + ++ + Sbjct: 215 TSQGKLQGIVVGLLPVFLGFVLFQMEPEAMAPLFSTYYGWAVMAVVAVLLIMGGVFIKKI 274 Query: 183 INFDV 187 + DV Sbjct: 275 VTIDV 279 >gi|116671480|ref|YP_832413.1| type II secretion system protein [Arthrobacter sp. FB24] gi|116611589|gb|ABK04313.1| type II secretion system protein [Arthrobacter sp. FB24] Length = 310 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 53/186 (28%), Positives = 96/186 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L KR A+F + L ++ +RAG + A+ +S P E RRVI Sbjct: 124 LGFLAGKRRARFDQQLGDTLQLLAGGLRAGHSILRAIDAAAAESQSPTSEEMRRVITETS 183 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG L S++ M ++ + + I + ++GGNL+E L ++ +R+R +K ++ Sbjct: 184 LGRDLLASLTDTSERMKNEDFVWIAQAIQINREVGGNLAEVLDQVNETIRERSEIKGHIK 243 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ E K SA+I+ ++P + ++ +PGYM+ + P G ++ + FM IG + MR Sbjct: 244 ALAAEGKFSAYILIAMPIGIVLMLMAVNPGYMDAMFTHPLGWAMIAASVVFMTIGSLWMR 303 Query: 181 LMINFD 186 +I+ Sbjct: 304 KIIDLK 309 >gi|308050052|ref|YP_003913618.1| Type II secretion system F domain protein [Ferrimonas balearica DSM 9799] gi|307632242|gb|ADN76544.1| Type II secretion system F domain protein [Ferrimonas balearica DSM 9799] Length = 324 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 58/187 (31%), Positives = 96/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR K + FP ALDI+ R ++AG DA+ + + P+ EF+ + + Sbjct: 138 LNRDFNKRMEKIEEQFPEALDILRRGIQAGYAFPDAIKLTYEEMDGPIAYEFKVMFAEIN 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++ + +P FST + VQ + GGNL+E L NL+RI+R R + +V+ Sbjct: 198 YGKDTRRALLHFIERVPSVSAMAFSTAVQVQKETGGNLAENLENLTRIIRKRFRFQRQVK 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 S + + SAW++ +P + +Y +SP Y L + G+ LL +A MLIGI + Sbjct: 258 TFSAQGRMSAWVLVCVPLALFGYLYLSSPTYARELTDTEIGNTLLTIAGIGMLIGIYWIS 317 Query: 181 LMINFDV 187 +I +V Sbjct: 318 RLIRIEV 324 >gi|264678229|ref|YP_003278136.1| type II secretion system protein [Comamonas testosteroni CNB-2] gi|262208742|gb|ACY32840.1| type II secretion system protein [Comamonas testosteroni CNB-2] Length = 329 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 60/187 (32%), Positives = 112/187 (59%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ R + P ALD+I R++RAG S ++ + + ++P+ EFR V + + Sbjct: 143 LQRKRLLRLKRMERQLPEALDLIARALRAGHAFSASLQMAGEELTEPIADEFRLVHDEIN 202 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL ++++ + +P+ ++ +F + +Q + GGNL+E L+NLSR++R+R + AKV+ Sbjct: 203 YGTSLQQALTNLGERVPITDLRYFIVAVLIQRESGGNLTEMLSNLSRLIRERLKLHAKVR 262 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS + + SAW +G +PF ++ L+ +P +M+ L DP G +L AA M+IG++++R Sbjct: 263 VLSADGRMSAWFLGLMPFGLAALLNLMNPEFMHPLWTDPIGITILKWLAALMVIGLLLLR 322 Query: 181 LMINFDV 187 + V Sbjct: 323 RIARIRV 329 >gi|254505024|ref|ZP_05117175.1| Bacterial type II secretion system protein F domain [Labrenzia alexandrii DFL-11] gi|222441095|gb|EEE47774.1| Bacterial type II secretion system protein F domain [Labrenzia alexandrii DFL-11] Length = 339 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 93/186 (50%), Positives = 134/186 (72%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + K+R FL++ PN +DIIVR V+AGLP+SD V V+ ++ +PV +EFR+V ETQ Sbjct: 153 IGNKRKRRFNAFLNELPNGIDIIVRGVKAGLPLSDCVKVVAREAREPVATEFRKVTETQV 212 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+SL+E++S+M +PL E +F + V+S+Q + GG L+EAL NLSR+LR RK MKAK++ Sbjct: 213 MGVSLAEALSKMPDRVPLPETNFLAIVVSIQQKAGGGLAEALGNLSRVLRQRKAMKAKIK 272 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EAK+SA IIG+LPF V +++F +P YM +L G +++ +M GIMVMR Sbjct: 273 ALSSEAKSSAAIIGALPFVVGGILFFIAPDYMMILFTATTGKIIVAGCLFWMFCGIMVMR 332 Query: 181 LMINFD 186 MINFD Sbjct: 333 SMINFD 338 >gi|16263304|ref|NP_436097.1| Pilus assembly protein [Sinorhizobium meliloti 1021] gi|307304377|ref|ZP_07584128.1| Type II secretion system F domain protein [Sinorhizobium meliloti BL225C] gi|14523983|gb|AAK65509.1| Pilus assembly protein [Sinorhizobium meliloti 1021] gi|306902579|gb|EFN33173.1| Type II secretion system F domain protein [Sinorhizobium meliloti BL225C] Length = 333 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 88/186 (47%), Positives = 130/186 (69%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + R +F +FPNA+D+IVR ++AGLP+ D + VI ++ +PV+ EF +++ Q Sbjct: 147 VNMKRNARFTRFAAEFPNAVDVIVRGLKAGLPMPDCLRVIAMEAQEPVKGEFLAIVQDQT 206 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ + E++ RM MPL E +FF+ V+++QS+ GG+LSEAL NLS++LR+RK MK K++ Sbjct: 207 LGIPVDEAVKRMSERMPLAEANFFAIVVAIQSRTGGSLSEALGNLSKVLRERKKMKGKIK 266 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S EAK+SA IIG+LPF V+ VYF SP YM +L G +++ +M IGI+VMR Sbjct: 267 AMSSEAKSSAGIIGALPFLVAGAVYFMSPDYMALLFTTMIGKVVVVGCGLWMGIGILVMR 326 Query: 181 LMINFD 186 MINFD Sbjct: 327 KMINFD 332 >gi|83716413|ref|YP_440463.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264] gi|167617238|ref|ZP_02385869.1| Flp pilus assembly protein TadB [Burkholderia thailandensis Bt4] gi|257141111|ref|ZP_05589373.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264] gi|83650238|gb|ABC34302.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264] Length = 325 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 58/185 (31%), Positives = 104/185 (56%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R K P+A D+I R++RAG S A++++ G+ +DP+ EFR + + G Sbjct: 141 RCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFADPMGGEFRITFDEINYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L E++ + +P+ ++ +F + +Q + GGNL+E L ++ ++R+R + K++ L Sbjct: 201 VPLQEALLNLATRVPVPDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKIRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E K SA I+ LPF + L+ +P +++VL D G +L+G M GI+ MR + Sbjct: 261 SAEGKLSALILTLLPFGTAALLAIMNPDFISVLWEDSAGVLLVGATVTSMAFGILWMRHI 320 Query: 183 INFDV 187 I V Sbjct: 321 IRIRV 325 >gi|167579123|ref|ZP_02371997.1| Flp pilus assembly protein TadB [Burkholderia thailandensis TXDOH] Length = 325 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 58/185 (31%), Positives = 104/185 (56%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R K P+A D+I R++RAG S A++++ G+ +DP+ EFR + + G Sbjct: 141 RCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFADPMGGEFRITFDEINYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L E++ + +P+ ++ +F + +Q + GGNL+E L ++ ++R+R + K++ L Sbjct: 201 VPLQEALLNLATRVPVPDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKIRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E K SA I+ LPF + L+ +P +++VL D G +L+G M GI+ MR + Sbjct: 261 SAEGKLSALILTLLPFGTAALLAIMNPDFISVLWEDSAGVLLVGATVTSMAFGILWMRHI 320 Query: 183 INFDV 187 I V Sbjct: 321 IRIRV 325 >gi|269960463|ref|ZP_06174835.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834540|gb|EEZ88627.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 322 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 98/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +I R KF + P ALDII R ++AG P++ A + + S P+ EF + Sbjct: 136 LQKMIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGNEMSAPLGPEFLNTFNMLN 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I +M P + FS+ + +Q + GGNL E + LS+ILR R + K++ Sbjct: 196 YGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSQILRARFKLARKIK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +S E++ SAW++ PF + ++ P Y+ +L P G ++ + IG + +R Sbjct: 256 TISAESRMSAWVLVLAPFGLYVIISLIRPEYIELLHTTPMGVKMIIGGMVSLFIGTIWIR 315 Query: 181 LMINFDV 187 ++N +V Sbjct: 316 KIVNIEV 322 >gi|254229336|ref|ZP_04922753.1| bacterial type II secretion system protein F domain [Vibrio sp. Ex25] gi|262393423|ref|YP_003285277.1| flp pilus assembly protein TadB [Vibrio sp. Ex25] gi|151938144|gb|EDN56985.1| bacterial type II secretion system protein F domain [Vibrio sp. Ex25] gi|262337017|gb|ACY50812.1| flp pilus assembly protein TadB [Vibrio sp. Ex25] Length = 322 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 96/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I R KF + P ALDII R ++AG P++ A + + S P+ EF + Sbjct: 136 LQKRIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGREVSAPLGPEFMNTFNLLN 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I +M P + FS+ + +Q + GGNL E + LS ILR R + K++ Sbjct: 196 YGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKLARKIK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +S E++ SAW++ PF + ++ P Y+ +L P G ++ + IG + +R Sbjct: 256 TISAESRMSAWVLVLAPFGLYVIISLVRPEYIELLHTHPMGIKMVIGGMVALFIGTLWIR 315 Query: 181 LMINFDV 187 ++N +V Sbjct: 316 KIVNIEV 322 >gi|307318084|ref|ZP_07597520.1| Type II secretion system F domain protein [Sinorhizobium meliloti AK83] gi|306896125|gb|EFN26875.1| Type II secretion system F domain protein [Sinorhizobium meliloti AK83] Length = 333 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 88/186 (47%), Positives = 130/186 (69%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + R +F +FPNA+D+IVR ++AGLP+ D + VI ++ +PV+ EF +++ Q Sbjct: 147 VNMKRNARFTRFAAEFPNAVDVIVRGLKAGLPMPDCLRVIAMEAQEPVKGEFLAIVQDQT 206 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ + E++ RM MPL E +FF+ V+++QS+ GG+LSEAL NLS++LR+RK MK K++ Sbjct: 207 LGIPVDEAVKRMSERMPLAEANFFAIVVAIQSRTGGSLSEALGNLSKVLRERKKMKGKIK 266 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S EAK+SA IIG+LPF V+ VYF SP YM +L G +++ +M IGI+VMR Sbjct: 267 AMSSEAKSSAGIIGALPFLVAGAVYFMSPDYMALLFTTMIGKVVVVGCGLWMGIGILVMR 326 Query: 181 LMINFD 186 MINFD Sbjct: 327 KMINFD 332 >gi|85373128|ref|YP_457190.1| hypothetical protein ELI_01505 [Erythrobacter litoralis HTCC2594] gi|84786211|gb|ABC62393.1| hypothetical protein ELI_01505 [Erythrobacter litoralis HTCC2594] Length = 323 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 67/187 (35%), Positives = 119/187 (63%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I KRTA F FP+A++++VR +R+GLPV++ +AV+ + PV EF+ ++E Sbjct: 137 VGFFINKRTADFNSKFPDAIELLVRGLRSGLPVTETLAVVAQEVPGPVGVEFKSIVERIK 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G ++ E + + + E +FF +++Q + GGNL+E L+NLS +LR R MK K++ Sbjct: 197 IGKTMEEGLQDTADKLNIPEFNFFCITLAIQRETGGNLAETLSNLSEVLRKRGQMKLKIR 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E+KASA+I+G+LPF V ++++ +P Y++ D R ++ +M IG +M Sbjct: 257 AMSSESKASAYIVGALPFIVFAMIWWINPTYIDGFFTDERLIVIGLGGMVWMSIGAFIMA 316 Query: 181 LMINFDV 187 M++F++ Sbjct: 317 KMVSFEI 323 >gi|259417689|ref|ZP_05741608.1| type II secretion system protein [Silicibacter sp. TrichCH4B] gi|259346595|gb|EEW58409.1| type II secretion system protein [Silicibacter sp. TrichCH4B] Length = 322 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 96/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR AK + P+ ++++VRS+R G P S AV ++ + DP+ +EF + + Sbjct: 136 VNSKAKKRMAKLEEQLPDGVELMVRSLRVGHPFSSAVQIVAKEVDDPLATEFGIIADECS 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+ Sbjct: 196 YGRDVGEALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ S + P P Y + +++ P + + I VMR Sbjct: 256 AITAEAQWSGKFLSGFPLFTLGGTLVMDPHYYDSVLDHPWFMPACFIVGGMLTANIFVMR 315 Query: 181 LMINFDV 187 + + V Sbjct: 316 KLTDIQV 322 >gi|258627497|ref|ZP_05722278.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603] gi|262165915|ref|ZP_06033652.1| flp pilus assembly protein TadB [Vibrio mimicus VM223] gi|262171239|ref|ZP_06038917.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451] gi|258580303|gb|EEW05271.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603] gi|261892315|gb|EEY38301.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451] gi|262025631|gb|EEY44299.1| flp pilus assembly protein TadB [Vibrio mimicus VM223] Length = 321 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 57/187 (30%), Positives = 102/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I R ++F + P+ALDII R ++AG PV+ A + + + P+ EF+ + Sbjct: 135 LQKRIADRLSRFEEQLPDALDIIRRMLQAGQPVTQAFNEVGKEMAAPIGLEFKNTFNLLN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + +I +M P + F++ + +Q + GGNLSE L + ++LR R + K++ Sbjct: 195 YGYDMRLAIMQMAERTPTVSMLAFASAVMLQKETGGNLSENLEKVGKVLRQRFKLTRKIK 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E++ SAWI+ PF + + F +P Y+ L D RG ++ V + G + +R Sbjct: 255 TLSAESRLSAWILVLSPFVLFIGLMFINPDYVTPLYQDARGMEMVSVGMVSLFFGAIWIR 314 Query: 181 LMINFDV 187 +I+F+V Sbjct: 315 KIISFEV 321 >gi|218530658|ref|YP_002421474.1| type II secretion system protein [Methylobacterium chloromethanicum CM4] gi|218522961|gb|ACK83546.1| type II secretion system protein [Methylobacterium chloromethanicum CM4] Length = 323 Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 92/187 (49%), Positives = 134/187 (71%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K K+R F+++ PNA+D++VR +R+G+P+ D + +I ++ +P+RSEFR +E+Q Sbjct: 137 LKRRQKRRVEAFIEELPNAMDVVVRGLRSGIPLGDCLRMIAREAKEPLRSEFRVTMESQA 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGLS+S++I RM +P+ EV+FFS VI +Q + GGNLSEAL NLSR+LR+RK M K+Q Sbjct: 197 LGLSMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQ 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIG+LPF V Y +SP Y +L G + L ++ +ML G+ VM+ Sbjct: 257 AMSMEAKASAAIIGALPFVVGGGTYLSSPDYTALLWTTSFGKIALVISGLWMLTGVFVMK 316 Query: 181 LMINFDV 187 MINFD+ Sbjct: 317 KMINFDI 323 >gi|163851907|ref|YP_001639950.1| type II secretion system protein [Methylobacterium extorquens PA1] gi|163663512|gb|ABY30879.1| type II secretion system protein [Methylobacterium extorquens PA1] Length = 323 Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 92/187 (49%), Positives = 134/187 (71%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K K+R F+++ PNA+D++VR +R+G+P+ D + +I ++ +P+RSEFR +E+Q Sbjct: 137 LKRRQKRRVEAFIEELPNAMDVVVRGLRSGIPLGDCLRMIAREAKEPLRSEFRVTMESQA 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGLS+S++I RM +P+ EV+FFS VI +Q + GGNLSEAL NLSR+LR+RK M K+Q Sbjct: 197 LGLSMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQ 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIG+LPF V Y +SP Y +L G + L ++ +ML G+ VM+ Sbjct: 257 AMSMEAKASAAIIGALPFVVGGGTYLSSPDYTALLWTTSFGKIALVISGLWMLTGVFVMK 316 Query: 181 LMINFDV 187 MINFD+ Sbjct: 317 KMINFDI 323 >gi|153834070|ref|ZP_01986737.1| Flp pilus assembly protein TadB [Vibrio harveyi HY01] gi|148869625|gb|EDL68615.1| Flp pilus assembly protein TadB [Vibrio harveyi HY01] Length = 322 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 57/187 (30%), Positives = 98/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +I R KF + P ALDII R ++AG P++ A + + S P+ EF + Sbjct: 136 LQKMIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGREVSAPLGPEFLNTFNLLN 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I +M P + FS+ + +Q + GGNL E + LSRILR R + K++ Sbjct: 196 YGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSRILRARFKLARKIK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +S E++ SAW++ PF + ++ P Y+ +L P G ++ + IG + +R Sbjct: 256 TISAESRMSAWVLVLAPFGLYIIISLVRPDYIELLHTSPMGIKMVIGGMISLFIGTLWIR 315 Query: 181 LMINFDV 187 ++N +V Sbjct: 316 KIVNIEV 322 >gi|220923699|ref|YP_002499001.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] gi|219948306|gb|ACL58698.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] Length = 327 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 88/172 (51%), Positives = 126/172 (73%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 +FPNA+D+IVR V+AGLP+ D + ++ ++ +PV+SEFR ++E Q LG+ L +++ R+ Sbjct: 155 EFPNAIDVIVRGVKAGLPLVDCLNIVAAEAQEPVKSEFRALVEDQTLGMPLQDAVERLPE 214 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 MPL E FF+ VI++QS+ GG+LSEAL NLSR+LR+RK M+ K++A+S EAKASA II Sbjct: 215 RMPLSEARFFAIVIAIQSRTGGSLSEALGNLSRVLRERKKMQGKIKAVSSEAKASAGIIA 274 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +LP V +LVY TSP YM +L P G +L +ML+G ++MR MINFD Sbjct: 275 ALPIVVGSLVYLTSPAYMALLFTTPIGKAVLAGCVVWMLLGTLMMRKMINFD 326 >gi|84501672|ref|ZP_00999844.1| type II/IV secretion system protein, TadC subfamily protein [Oceanicola batsensis HTCC2597] gi|84390293|gb|EAQ02852.1| type II/IV secretion system protein, TadC subfamily protein [Oceanicola batsensis HTCC2597] Length = 322 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 102/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR + + P+A++++VRS+R G P S A+ ++ + +DP+ SEF + + Sbjct: 136 VNSKAKKRMSLIEEQLPDAVELMVRSLRVGHPFSSAIQIVSREVADPLGSEFGIIADENA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ + + LQ++ F + +++Q Q GGNL+E LA L+ ++R R + +V+ Sbjct: 196 YGRDMGEALKDLAERIGLQDLRFLAVAVTIQQQSGGNLAEILAGLANVIRARFRLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ S + + P + P Y + +++ P A F+ + ++VMR Sbjct: 256 AITAEAQWSGMFLSAFPIVALIAINVMDPHYYDEVMDHPFFLPACFAVAGFLGVNLIVMR 315 Query: 181 LMINFDV 187 +++ V Sbjct: 316 KLVDIKV 322 >gi|269926133|ref|YP_003322756.1| type II secretion system protein [Thermobaculum terrenum ATCC BAA-798] gi|269789793|gb|ACZ41934.1| type II secretion system protein [Thermobaculum terrenum ATCC BAA-798] Length = 336 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 108/187 (57%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + K+R + P A+D++ ++ AG ++ A+ + + S+P+ E +V+ Q Sbjct: 150 LALRRKRRLSALERQLPGAIDVLAGALEAGSSLAQAMMLAAREMSNPISDELIKVVRDQE 209 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGLS E++ RM+ P +++ T I++Q ++GG+L+ L ++S +R+R +K +++ Sbjct: 210 LGLSQEEALRRMLERCPSEDLDMMITAINIQYRVGGSLAHVLKSISTTIRERLRIKGEIK 269 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + + SA+I+ ++PF ++ +++ + Y+ L G ++L VA A +++G +MR Sbjct: 270 VLTAQGRISAYIVTAIPFLLTAVIFLLNRSYIMPLFTTNMGRIMLAVALAGIMMGYYMMR 329 Query: 181 LMINFDV 187 +I V Sbjct: 330 RIIAIKV 336 >gi|254255260|ref|ZP_04948576.1| Flp pilus assembly protein TadB [Burkholderia dolosa AUO158] gi|124900997|gb|EAY71747.1| Flp pilus assembly protein TadB [Burkholderia dolosa AUO158] Length = 325 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 50/181 (27%), Positives = 101/181 (55%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R K P+ D+I R++R+G + + ++ + DP+ EFR + + G+ L+ Sbjct: 145 RRMRKLQRQLPDVCDMIARALRSGHSFTSTLGMVGDEFPDPMGGEFRVTFDEVNYGVPLN 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + +P Q++ +F + +Q + GGNL+E L +++ ++R+R + KV+ LS E Sbjct: 205 DALKNLATRVPAQDLRYFVIAVLIQRETGGNLAELLDSIAALIRERFKLFDKVRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWI+G LPF ++ + +++VL DP G ++G M G++ +R ++ Sbjct: 265 RLSAWILGLLPFGTGAVMALVNREFLSVLWQDPAGIRMVGTMLVSMAFGLLWIRRIVRIR 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|254464012|ref|ZP_05077423.1| type II secretion system protein [Rhodobacterales bacterium Y4I] gi|206684920|gb|EDZ45402.1| type II secretion system protein [Rhodobacterales bacterium Y4I] Length = 322 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 96/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR A + P+A++++VRS+R G P + AV ++ + DP+ +EF + + Sbjct: 136 VNKKAAKRMAMIEEQLPDAVELMVRSLRVGHPFTSAVQIVANEVEDPLATEFGIISDECA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+ Sbjct: 196 YGRDIGEALKEMAERLDMQDMRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ S + P + P Y + +++ P + + VMR Sbjct: 256 AITAEAQWSGKFLSGFPLFCLAGILVKDPNYYDKVLDHPWFIPACFTVGVMLTANLFVMR 315 Query: 181 LMINFDV 187 ++ N V Sbjct: 316 MLTNIKV 322 >gi|240139030|ref|YP_002963505.1| Pilus assembly protein, type II secretion protein [Methylobacterium extorquens AM1] gi|240009002|gb|ACS40228.1| Pilus assembly protein, type II secretion protein [Methylobacterium extorquens AM1] Length = 323 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 92/187 (49%), Positives = 134/187 (71%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K K+R F+++ PNA+D++VR +R+G+P+ D + +I ++ +P+RSEFR +E+Q Sbjct: 137 LKRRQKRRVEAFIEELPNAMDVVVRGLRSGIPLGDCLRMIAREAKEPLRSEFRVTMESQA 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGLS+S++I RM +P+ EV+FFS VI +Q + GGNLSEAL NLSR+LR+RK M K+Q Sbjct: 197 LGLSMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQ 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIG+LPF V Y +SP Y +L G + L ++ +ML G+ VM+ Sbjct: 257 AMSMEAKASAAIIGALPFVVGGGTYLSSPDYTALLWTTSFGKIALVISGLWMLTGVFVMK 316 Query: 181 LMINFDV 187 MINFD+ Sbjct: 317 KMINFDI 323 >gi|84387238|ref|ZP_00990259.1| Flp pilus assembly protein TadB [Vibrio splendidus 12B01] gi|84377885|gb|EAP94747.1| Flp pilus assembly protein TadB [Vibrio splendidus 12B01] Length = 321 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 58/187 (31%), Positives = 104/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ + R A+F + P ALDII R+++AG P+ + + + DP+ EF+ + Sbjct: 135 VQNRVTYRMARFEEQLPEALDIIRRALQAGQPLVQSFNEVGEELPDPIGVEFKNTYNLLN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I +M +P + FS+ + +Q + GGNLSE L +S +LR R ++ K++ Sbjct: 195 YGYDLRLAILQMTERVPTVSMLAFSSAVMLQKETGGNLSENLQKVSEVLRARFKLERKIK 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E++ SAWI+ PF + + SP Y+ L DPRG ++ V + IG + ++ Sbjct: 255 TLSAESRLSAWILTLSPFGLFFALRVASPEYIEPLYKDPRGLSMVSVGIVLLAIGALWIK 314 Query: 181 LMINFDV 187 +I+ ++ Sbjct: 315 KIISIEI 321 >gi|301165544|emb|CBW25115.1| putative pilus assembly-related protein [Bacteriovorax marinus SJ] Length = 296 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 90/187 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L+ +R + +AL ++ +RAGL V A+ ++V + PV EF +++ Sbjct: 110 INYLVDRRINAYSAQMVDALTLLSNGIRAGLSVPQAIGMVVDEMPAPVSQEFNMILQQNR 169 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E + + +P ++ F + I++ + GGNL+E + ++R+R +K K+ Sbjct: 170 IGVPLEECFDNLSKRIPTEDNDMFVSSINILRETGGNLAEVFDTIVDVIRERVRLKQKID 229 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + I +P+ + + + + P + + P G +L A AF G V+ Sbjct: 230 TFTAQGMFQGLTIFLMPYGIGLIYFVSDPESVKPMFTHPLGIILTLAALAFDFAGGFVIL 289 Query: 181 LMINFDV 187 ++ V Sbjct: 290 KIVKIKV 296 >gi|170734861|ref|YP_001773975.1| type II secretion system protein [Burkholderia cenocepacia MC0-3] gi|169820899|gb|ACA95480.1| type II secretion system protein [Burkholderia cenocepacia MC0-3] Length = 325 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 52/185 (28%), Positives = 104/185 (56%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 KR K P+ D+I R++R+G + + ++ + +P+ EFR + + G Sbjct: 141 RCRAKRMRKLERQLPDICDMIARALRSGHSFTSTLGMVGDEFPEPMGGEFRVTFDEVNYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +SL ++++ + +P+Q++ +F + +Q + GGNL+E L +++ ++R+R + KV+ L Sbjct: 201 VSLHDALTNLATRVPVQDLRYFVIAVLIQRETGGNLAELLESIAGLIRERFKLFDKVRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAWI+G LPF + ++ + +++VL DP G ++G ML G+ +R + Sbjct: 261 SAEGRLSAWILGLLPFGTAAVMALLNREFLSVLWEDPAGIRMVGTMLVSMLFGLFWIRRI 320 Query: 183 INFDV 187 + V Sbjct: 321 VRIRV 325 >gi|302037433|ref|YP_003797755.1| pilus assembly protein TadB [Candidatus Nitrospira defluvii] gi|300605497|emb|CBK41830.1| Pilus assembly protein TadB [Candidatus Nitrospira defluvii] Length = 313 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 62/186 (33%), Positives = 105/186 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + R A F P+ALD++ RS+RAG + ++ + P+ +EFR V+E Sbjct: 127 LSWRAAARRAHFQRQLPDALDMMARSLRAGHAFLAGMKIVAEEFPAPIGAEFRSVVEEVA 186 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+S++E++ R+ + ++FF T + +Q + GGNL+E L +SR+ R R + AKV+ Sbjct: 187 FGVSVTEALQRLTARVDSPALNFFVTSVLIQRESGGNLAEILNTISRMTRKRFELAAKVR 246 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SA I+ +LPF + L+ +P Y+ +L DP G ++ V MLIG +V + Sbjct: 247 AVSAEGRLSAVILFALPFALGGLLLIINPDYVLLLFRDPIGRAMVTVGGVLMLIGGVVTK 306 Query: 181 LMINFD 186 M+ Sbjct: 307 RMVTVR 312 >gi|13475421|ref|NP_106985.1| hypothetical protein mlr6484 [Mesorhizobium loti MAFF303099] gi|14026173|dbj|BAB52771.1| mlr6484 [Mesorhizobium loti MAFF303099] Length = 323 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 62/186 (33%), Positives = 111/186 (59%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ KR KF P+ALD+IVRS+RAG P + A+A++ + DP+ +EF V + Sbjct: 137 LRSARDKRIKKFAVQLPDALDMIVRSLRAGHPTTVAIALVAREMPDPLGTEFGIVSDEIS 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 GLSL +++ ++ + + + S +S+Q++ GGNL+E L+NLS +LR+R+ ++ K++ Sbjct: 197 FGLSLEQAVRKLSERVGFEGLHLLSVSLSIQAKTGGNLTEILSNLSSVLRERRKLRMKIR 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + SAWII P + ++ +P + + +P + + ++ L+G +M Sbjct: 257 ALSAEGRMSAWIISLFPLLMLGVLSIAAPSFYGDVWGNPIVVPVFVIFGSWALLGDFIMY 316 Query: 181 LMINFD 186 M+NFD Sbjct: 317 RMVNFD 322 >gi|227818620|ref|YP_002822591.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234] gi|36958876|gb|AAQ87301.1| TadB-like protein involved in pilus formation and/or protein secretion [Sinorhizobium fredii NGR234] gi|227337619|gb|ACP21838.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234] Length = 332 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 91/186 (48%), Positives = 132/186 (70%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R +F +FPNA+D+IVR ++AGLP++D + VI ++ +PV+ EF + Q Sbjct: 146 VNTTRNRRLKRFTAEFPNAVDVIVRGLKAGLPMTDCLRVIAAEAQEPVKGEFLTIAHDQT 205 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGL + E++ R+ MPL E FF+ VI++QS+ GG+LSEAL NLS++LR+RK MKAK++ Sbjct: 206 LGLPVDEAVERLCERMPLPEARFFAIVITIQSRTGGSLSEALGNLSKVLRERKKMKAKIK 265 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S EAK+SA IIG+LPF V+ VY TSP YM++L G M+L +A +M IG ++MR Sbjct: 266 AMSAEAKSSAGIIGALPFFVAGAVYLTSPDYMSLLFTTMTGKMVLVGSALWMGIGTLLMR 325 Query: 181 LMINFD 186 MINFD Sbjct: 326 KMINFD 331 >gi|328474277|gb|EGF45082.1| putative tight adherence TadB-like transmembrane protein [Vibrio parahaemolyticus 10329] Length = 322 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 96/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I R KF + P ALDII R ++AG P++ A + + S P+ EF + Sbjct: 136 LQKKIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGREVSAPLGPEFLNTFNLLN 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I +M P + FS+ + +Q + GGNL E + LS ILR R + K++ Sbjct: 196 YGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKLARKIK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +S E++ SAW++ PF + ++ P Y+ +L P G ++ + IG + +R Sbjct: 256 TISAESRMSAWVLVLAPFALYVIISLVRPEYIELLHTHPMGIKMVIGGMVALFIGTLWIR 315 Query: 181 LMINFDV 187 ++N +V Sbjct: 316 KIVNIEV 322 >gi|28899185|ref|NP_798790.1| putative tight adherence TadB-like transmembrane protein [Vibrio parahaemolyticus RIMD 2210633] gi|153836794|ref|ZP_01989461.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810] gi|260361576|ref|ZP_05774603.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030] gi|260876733|ref|ZP_05889088.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034] gi|260898189|ref|ZP_05906685.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466] gi|260900404|ref|ZP_05908799.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037] gi|28807409|dbj|BAC60674.1| putative tight adherence TadB-related transmembrane protein [Vibrio parahaemolyticus RIMD 2210633] gi|149749940|gb|EDM60685.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810] gi|308089098|gb|EFO38793.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466] gi|308091412|gb|EFO41107.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034] gi|308109112|gb|EFO46652.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037] gi|308114015|gb|EFO51555.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030] Length = 322 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 96/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I R KF + P ALDII R ++AG P++ A + + S P+ EF + Sbjct: 136 LQKKIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGREVSAPLGPEFLNTFNLLN 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I +M P + FS+ + +Q + GGNL E + LS ILR R + K++ Sbjct: 196 YGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKLARKIK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +S E++ SAW++ PF + ++ P Y+ +L P G ++ + IG + +R Sbjct: 256 TISAESRMSAWVLVLAPFALYVIISLVRPEYIELLHTHPMGIKMVIGGMVALFIGTLWIR 315 Query: 181 LMINFDV 187 ++N +V Sbjct: 316 KIVNIEV 322 >gi|254561625|ref|YP_003068720.1| Pilus assembly protein, type II secretion protein [Methylobacterium extorquens DM4] gi|254268903|emb|CAX24864.1| Pilus assembly protein, type II secretion protein [Methylobacterium extorquens DM4] Length = 323 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 91/187 (48%), Positives = 134/187 (71%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K ++R F+++ PNA+D++VR +R+G+P+ D + +I ++ +P+RSEFR +E+Q Sbjct: 137 LKRRQRRRVEAFIEELPNAMDVVVRGLRSGIPLGDCLRMIAREAKEPLRSEFRVTMESQA 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGLS+S++I RM +P+ EV+FFS VI +Q + GGNLSEAL NLSR+LR+RK M K+Q Sbjct: 197 LGLSMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQ 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIG+LPF V Y +SP Y +L G + L ++ +ML G+ VM+ Sbjct: 257 AMSMEAKASAAIIGALPFVVGGGTYLSSPDYTALLWTTSFGKIALVISGLWMLTGVFVMK 316 Query: 181 LMINFDV 187 MINFD+ Sbjct: 317 KMINFDI 323 >gi|116687152|ref|YP_840399.1| type II secretion system protein [Burkholderia cenocepacia HI2424] gi|116652867|gb|ABK13506.1| type II secretion system protein [Burkholderia cenocepacia HI2424] Length = 325 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 53/185 (28%), Positives = 105/185 (56%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 KR K P+ D+I R++R+G + + ++ + S+P+ EFR + + G Sbjct: 141 RCRAKRMRKLERQLPDICDMIARALRSGHSFTSTLGMVGDEFSEPMGGEFRVTFDEVNYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +SL ++++ + +P+Q++ +F + +Q + GGNL+E L +++ ++R+R + KV+ L Sbjct: 201 VSLHDALTNLATRVPVQDLRYFVIAVLIQRETGGNLAELLESIAGLIRERFKLFDKVRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAWI+G LPF + ++ + +++VL DP G ++G ML G+ +R + Sbjct: 261 SAEGRLSAWILGLLPFGTAAVMALLNREFLSVLWEDPAGIRMVGTMLVSMLFGLFWIRRI 320 Query: 183 INFDV 187 + V Sbjct: 321 VRIRV 325 >gi|330811032|ref|YP_004355494.1| type II secretion system protein; membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379140|gb|AEA70490.1| putative type II secretion system protein; putative membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 328 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 65/183 (35%), Positives = 102/183 (55%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 KR A F + P+ALD + R++RAG P ++ + ++ + PV EF + G Sbjct: 146 RNKRFAAFEEGLPDALDAMCRALRAGHPFNETLRLVAEEHKGPVAQEFGMTFSDINYGND 205 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ ++ MP V T I + + GGNL+E L LSR++R R + K++ LS Sbjct: 206 VRRAMLGLLERMPSMTVMMLVTSILIHRETGGNLTEVLERLSRLIRGRFRFQRKIRTLSA 265 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E + SAW++ ++PF ++ + TSP YM VLINDP GH L+ A MLIGI ++ +I Sbjct: 266 EGRMSAWVLVAIPFVLAIAIVLTSPSYMPVLINDPIGHKLIIGAFCAMLIGIFWIKKIIR 325 Query: 185 FDV 187 V Sbjct: 326 IQV 328 >gi|134299963|ref|YP_001113459.1| type II secretion system protein [Desulfotomaculum reducens MI-1] gi|134052663|gb|ABO50634.1| type II secretion system protein [Desulfotomaculum reducens MI-1] Length = 323 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 108/187 (57%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +KR AKF +AL I+ S+R+G A+ ++ + +P+ EF R + + Sbjct: 137 IRIKRQKRLAKFNSQISDALVIMSNSLRSGFSFLQAMDMVRKELPNPISKEFGRTFQEMN 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG E++ M + + ++ T + +Q Q+GGNL+E + N++ +R+R +K +++ Sbjct: 197 LGTQAEEALENMAQRVKSDDLDLLITAVLIQRQVGGNLAEVMDNIADTIRERVRVKGQIR 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + + S ++IG LPF ++T++ SP Y+ L N G +++G+A +IG+M ++ Sbjct: 257 TLTAQGRISGFVIGLLPFGLTTVMITISPSYILTLFNSQLGLLMMGMAIISEVIGVMFIK 316 Query: 181 LMINFDV 187 ++N +V Sbjct: 317 KIVNIEV 323 >gi|296158516|ref|ZP_06841346.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] gi|295891084|gb|EFG70872.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] Length = 282 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 100/187 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K + KKR P+AL ++ ++RAG A+ +V +++ P+ EF ++ Sbjct: 96 LKRMRKKRIEALEKQLPDALLMMSGALRAGASFPSALEAVVHETTPPISQEFDLLMREIR 155 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L ++ + + +P+ ++ + +++ ++GGNL+EAL +++R LR++ M+ K++ Sbjct: 156 LGIDLDIAMRNVEKRIPIPDLLMMTAAVTIAREVGGNLAEALESVARTLREKLQMEGKIR 215 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + + ++ LP + ++ F P M L N+P G L V +G + + Sbjct: 216 ALTSQGRMQGIVMTCLPLFLMLVLRFMEPKAMAPLFNEPVGWATLAVIGVMEFLGYVWIT 275 Query: 181 LMINFDV 187 + N DV Sbjct: 276 KITNIDV 282 >gi|197106462|ref|YP_002131839.1| Flp pilus assembly protein TadB [Phenylobacterium zucineum HLK1] gi|196479882|gb|ACG79410.1| Flp pilus assembly protein TadB [Phenylobacterium zucineum HLK1] Length = 305 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 74/184 (40%), Positives = 113/184 (61%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L+ +R +FL F A+ +IVR +RAGLPV++ V V+ + PV EFRRV + LG Sbjct: 122 LMGRRRGRFLKTFAEAIALIVRGLRAGLPVTETVGVVGREIEGPVGEEFRRVADEVRLGA 181 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++ R + L E F + ++VQ + GGNL+E+L NL ILR R+ M+ K++A+S Sbjct: 182 PIEGAMGEAARRIGLPEFDFLAICLAVQRETGGNLAESLENLEHILRRRQQMRLKIKAMS 241 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA ASA IIG LPF ++ L+ SP YM VL P G +++ A + +G ++MR M+ Sbjct: 242 SEATASALIIGVLPFAMAVLMSIASPDYMRVLFTGPLGRLMIAAGLASLAVGGLIMRKMV 301 Query: 184 NFDV 187 F++ Sbjct: 302 RFEI 305 >gi|32473986|ref|NP_866980.1| secretion system protein TadB [Rhodopirellula baltica SH 1] gi|32444523|emb|CAD74522.1| secretion system protein TadB [Rhodopirellula baltica SH 1] Length = 347 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 56/185 (30%), Positives = 102/185 (55%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 K+R +F + P AL+++ RS+RAG ++ ++ + P+ +EFRR E Q G Sbjct: 163 FKRKRRLKRFGEQIPEALELLGRSLRAGHSLNAGFGLVGDEMEAPLATEFRRCFEEQKFG 222 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L ESI M +P ++ FF+T + +Q Q GG+LSE L + ++R+R + +QAL Sbjct: 223 IPLDESIEDMAERVPNMDLRFFATAVILQRQTGGDLSEILDKIGHLVRERLQILGTIQAL 282 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + S ++ +LP + ++ + Y+ +L D G M LG+A ++G + ++ + Sbjct: 283 TGEGRMSGAVLLALPPVLFLVMLKINAEYVLMLFTDELGRMALGMALVTQVLGALAIKKI 342 Query: 183 INFDV 187 I V Sbjct: 343 ITIKV 347 >gi|329935279|ref|ZP_08285245.1| type II secretion system F protein [Streptomyces griseoaurantiacus M045] gi|329305102|gb|EGG48961.1| type II secretion system F protein [Streptomyces griseoaurantiacus M045] Length = 315 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 94/187 (50%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR F++ P+ ++ + AGL + A+A+ + P E RV + + Sbjct: 129 LNWQRQKRIEAFINQLPDVARLLANATAAGLALRTALAMAAEELEAPAGEELARVADQLN 188 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG ++ +++ + +P +E+ T + + ++ GG++ +L NL++ L DRK + +V+ Sbjct: 189 LGRTVDDALGELAERLPSRELIVLVTTLVLSNKAGGSVVSSLRNLTQTLEDRKETRREVR 248 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + E A+A+ + L LV ++ G + + P G L+ ++ A +G +V+R Sbjct: 249 TMLSEVNATAFTVPMLGLGSLVLVNSSNEGALERVTGSPLGQALVLISLALYTVGFLVIR 308 Query: 181 LMINFDV 187 + +V Sbjct: 309 RLGRIEV 315 >gi|84687273|ref|ZP_01015153.1| Putative Flp pilus assembly protein TadB [Maritimibacter alkaliphilus HTCC2654] gi|84664706|gb|EAQ11190.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium HTCC2654] Length = 322 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 94/187 (50%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR A F + P+A++++VRS+R G P S A+ ++ + DP+ SE + + Sbjct: 136 INGKAKKRMAMFEEQLPDAVELMVRSLRVGHPFSSAIQIVAKEVPDPLGSEIGIIADESA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + +S+ M M +Q++ F + +++Q GGNL+E L L++++R R + +V+ Sbjct: 196 YGRDIGDSLKAMAERMDMQDLRFLAVAVTIQQTSGGNLAEILDGLAKVIRSRFKLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EAK S + P ++ P Y + + V F++ VM+ Sbjct: 256 AITAEAKWSGTFLSGFPILAIVMINVIQPNYYDDVKETGFFIPAALVCLGFLIANYFVMK 315 Query: 181 LMINFDV 187 + N V Sbjct: 316 ALTNIKV 322 >gi|296134294|ref|YP_003641541.1| Type II secretion system F domain protein [Thermincola sp. JR] gi|296032872|gb|ADG83640.1| Type II secretion system F domain protein [Thermincola potens JR] Length = 320 Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 103/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K +KR A+F +AL I+ S+RAG A+ ++ + P+ EF R + + Sbjct: 134 VKAAKQKRVARFNAQIGDALIIMANSLRAGFSFLQAMELVSKEMPAPISVEFARALREMN 193 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + E++ + + +++ T + +Q Q+GGNLS+ L +S +R+R +K +++ Sbjct: 194 LGTATEEALQNLCNRVESEDLDLVITAVLIQRQVGGNLSQILEGISHTIRERVRIKGEIK 253 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + + S I+G+LP + ++ +PGY+ +L +D G +L+ LIG+ +++ Sbjct: 254 TLTAQGRISGMIVGALPVGMGLILAVINPGYIGILFSDSLGLVLIVAGVILQLIGVALIK 313 Query: 181 LMINFDV 187 +++ V Sbjct: 314 KIVDIKV 320 >gi|197295160|ref|YP_002153701.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] gi|195944639|emb|CAR57243.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] Length = 325 Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 52/185 (28%), Positives = 104/185 (56%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R K P+ D+I R++R+G + + ++ + S+P+ EFR + + G Sbjct: 141 RCRARRMRKLERQLPDICDMIARALRSGHSFTSTLGMVGDEFSEPMGGEFRVTFDEVNYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +SL +++ + +P+Q++ +F + +Q + GGNL+E L +++ ++R+R + KV+ L Sbjct: 201 VSLHDALMNLATRVPVQDLRYFVIAVLIQRETGGNLAELLDSIAGLIRERFKLFDKVRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAWI+G LPF + ++ + +++VL DP G ++G ML G+ +R + Sbjct: 261 SAEGRLSAWILGLLPFGTAAVMALLNREFLSVLWEDPAGIRMVGTMLVSMLFGLFWIRRI 320 Query: 183 INFDV 187 + V Sbjct: 321 VRIRV 325 >gi|224824219|ref|ZP_03697327.1| type II secretion system protein [Lutiella nitroferrum 2002] gi|224603638|gb|EEG09813.1| type II secretion system protein [Lutiella nitroferrum 2002] Length = 324 Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 62/185 (33%), Positives = 106/185 (57%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 KR AKF + P+A+D++ R++RAG + ++ +I + SDP+ EFR + + G Sbjct: 140 RFRHKRLAKFEEQLPDAIDLMCRALRAGHALPQSLKMIGDEMSDPISGEFRTTFDEVNYG 199 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 SL E++ + +P ++ + + +Q + GGNL+E L N+S ++R R + ++ L Sbjct: 200 FSLQEAMMNLATRIPSTDLRYMVIAVLIQRETGGNLAELLGNISALIRARLKLYGTIRVL 259 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E K SAWI+ LPF V+ +++ +PG+M VL D G M++ + ML GI MR + Sbjct: 260 AAEGKLSAWILTILPFAVALVIHLLNPGFMKVLWEDQTGLMMVSIIGLMMLAGIFWMRQI 319 Query: 183 INFDV 187 I V Sbjct: 320 IKIQV 324 >gi|299067811|emb|CBJ39022.1| Tad secretion system, pilus assembly protein [Ralstonia solanacearum CMR15] Length = 325 Score = 117 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 95/185 (51%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 KR + + P A D++ R++RAG + A+ + + P+ +E V + G Sbjct: 141 RCRAKRLLRLEEQLPEAADLLSRALRAGHSLPSALDMAGSELPAPIGAELALVFSEINYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + ++++ + +P++++ + + +Q + GGNL+E L N+ ++R R + KV+ L Sbjct: 201 VPMGDALTGLTDRVPIEDLHYLVIAVLIQRESGGNLAEILDNVGSLIRKRLQLLDKVRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + WI+ LP V +VY +P ++ L DP G +L A +G++ +R + Sbjct: 261 SAEGRMGGWILTLLPPVVGVIVYELNPDLISTLWKDPTGLKMLWYAITMTCVGVIWIRQI 320 Query: 183 INFDV 187 + + Sbjct: 321 VRIHI 325 >gi|153006802|ref|YP_001381127.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5] gi|152030375|gb|ABS28143.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5] Length = 320 Score = 117 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 64/185 (34%), Positives = 105/185 (56%), Gaps = 1/185 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +R+ K + P AL+++ RS+RAG ++ A V+ G+ +PV EF R + Q LGL Sbjct: 136 ARSRRSQKISEQLPEALEMMARSLRAGHALTSAFQVVAGEMPEPVCVEFARSYDEQRLGL 195 Query: 64 SLSESISRMVRYMP-LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 SL +++ M P +V F+ +Q + GGNL+E L +S +R R K++AL Sbjct: 196 SLEQAVLHMAERCPGNSDVKIFAVSAVIQRETGGNLAEILEKISDTIRQRYRFYGKLRAL 255 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E +ASAW++G LPF V+ V +PGY+ L +P GH ++G A +GI+ +R + Sbjct: 256 TGEGRASAWVLGLLPFIVALAVSVMNPGYLRTLAENPSGHWIVGYAIVSWAVGIVWLRRL 315 Query: 183 INFDV 187 ++ Sbjct: 316 TQLEI 320 >gi|110636325|ref|YP_676533.1| type II secretion system protein [Mesorhizobium sp. BNC1] gi|110287309|gb|ABG65368.1| type II secretion system protein [Chelativorans sp. BNC1] Length = 337 Score = 117 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 107/187 (57%), Positives = 147/187 (78%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L ++R FL++FPNALDIIVR+V++GLP++DAV +I ++ +PVR+EFRR++E Q Sbjct: 151 IAYLRRRRVQAFLNEFPNALDIIVRAVKSGLPLNDAVRMIAVEAQEPVRTEFRRLVEAQQ 210 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGL ++E+ RM MP EV+FF V+ +QSQ GGNLSEAL NLSR+LR+RK +KA+VQ Sbjct: 211 LGLPMAEAAMRMSETMPCPEVNFFGIVLQIQSQAGGNLSEALGNLSRVLRERKKIKARVQ 270 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASA IIG+LP V+ LVY TSP Y+ L ++ GH++LG++A +M IGI VMR Sbjct: 271 ALSMEAKASAVIIGALPIVVAALVYITSPAYIMPLFSESVGHLILGLSAVWMSIGIFVMR 330 Query: 181 LMINFDV 187 M+NF+V Sbjct: 331 QMMNFEV 337 >gi|54302282|ref|YP_132275.1| Flp pilus assembly protein TadB [Photobacterium profundum SS9] gi|46915704|emb|CAG22475.1| hypothetical Flp pilus assembly protein TadB [Photobacterium profundum SS9] Length = 288 Score = 117 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 106/187 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ +KR F + F ALD++ R++ G P ++ + + + P+ EF + + Sbjct: 102 LKYKAEKRLCLFEEQFVEALDVMKRALLVGYPFTEVMKTVSQEMPAPISVEFGKTFSELN 161 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + +++ + + P V F++ + +Q + GGNL+E L NLS ++R R + KV+ Sbjct: 162 YGVDIKVALANLAQRNPSISVLAFNSAVIIQKETGGNLAETLENLSEVIRGRFRLLRKVR 221 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +LS E + SAWI+ +PF + ++Y ++P Y++ L RG LL + M++G++ +R Sbjct: 222 SLSAEGRMSAWILMCVPFVLVIMIYLSTPDYLDPLFESDRGANLLMITGVCMILGMIWIR 281 Query: 181 LMINFDV 187 ++ +V Sbjct: 282 KILRIEV 288 >gi|220922783|ref|YP_002498085.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] gi|219947390|gb|ACL57782.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] Length = 322 Score = 117 bits (292), Expect = 8e-25, Method: Composition-based stats. Identities = 88/187 (47%), Positives = 137/187 (73%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L K+R A+F+ + PNA+D+IVR +++GLP+ D + +I ++ DPV++EFR ++E+Q Sbjct: 136 LAYLRKRRMARFVLELPNAMDVIVRGIKSGLPIGDCLRIIAREAPDPVKTEFRAIVESQA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GL L E+ +++ MP+ E +FF+ VI +QS+ GGNLSEAL NLSR+LRDR+ M KV Sbjct: 196 IGLPLPEAAAKLYERMPIPEANFFAIVIGIQSKSGGNLSEALGNLSRVLRDRRRMADKVS 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEA+ASA II SLPF V+ L Y +SP Y+++L G + + + +MLIG++VM+ Sbjct: 256 AMSMEARASAAIIASLPFAVAILCYLSSPDYISLLWTTQVGQIAIAASGLWMLIGVLVMK 315 Query: 181 LMINFDV 187 MI F++ Sbjct: 316 RMITFEI 322 >gi|186474107|ref|YP_001861449.1| type II secretion system protein [Burkholderia phymatum STM815] gi|184196439|gb|ACC74403.1| type II secretion system protein [Burkholderia phymatum STM815] Length = 326 Score = 117 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 60/187 (32%), Positives = 106/187 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ KR + P+A D+I R++RAG A+ ++ + P+ EFR + + Sbjct: 140 LRSRRAKRVVQLERLLPDAADLIARALRAGHSFPAALGMVADELPQPLGGEFRIAFDEIN 199 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+S+++++ +V +P+ +V +F + +Q + GGNL+E L N++ I+R+R + AKV+ Sbjct: 200 CGVSMNDALMNLVSRVPVDDVRYFVIAVLIQREAGGNLAEILGNIATIIRERLKLLAKVR 259 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + SAWI+G LPF V + +PGY V D G + GVA + M +G++ +R Sbjct: 260 VLSAEGRLSAWILGLLPFIVIAALSVLNPGYCKVFWEDETGQKIAGVALSMMALGVLWLR 319 Query: 181 LMINFDV 187 + V Sbjct: 320 KTVRIRV 326 >gi|296444391|ref|ZP_06886356.1| Type II secretion system F domain protein [Methylosinus trichosporium OB3b] gi|296258038|gb|EFH05100.1| Type II secretion system F domain protein [Methylosinus trichosporium OB3b] Length = 322 Score = 117 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 93/187 (49%), Positives = 138/187 (73%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R AKF++ FP ++DII+R ++AGLPV D +I ++ +PVRSEFR+++E+Q Sbjct: 136 LGFLARRRVAKFIEAFPGSVDIIIRGIKAGLPVGDCFRMIASEADEPVRSEFRQIVESQT 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GLS+ E+ R MP+ E SFFS VIS+Q + GGNLSEAL+NL+ +LR+RK MKAKV+ Sbjct: 196 IGLSIGEATERFAERMPVAEASFFSIVISLQEKSGGNLSEALSNLAGVLRERKKMKAKVR 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S EAKASA IIGSLPF V V+FT+ YM VL + G+M++ + +M +G+ +M+ Sbjct: 256 AMSAEAKASAGIIGSLPFLVGLAVWFTNKPYMAVLFDTTVGNMIIAGSLLWMAVGVFIMK 315 Query: 181 LMINFDV 187 MI+F++ Sbjct: 316 NMIDFEI 322 >gi|269966899|ref|ZP_06180972.1| putative tight adherence TadB-related transmembrane protein [Vibrio alginolyticus 40B] gi|269828566|gb|EEZ82827.1| putative tight adherence TadB-related transmembrane protein [Vibrio alginolyticus 40B] Length = 322 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 95/187 (50%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I R KF + P ALDII R ++AG P++ + + S P+ EF + Sbjct: 136 IQKRIADRLMKFEEQLPEALDIIKRVLQAGQPITQGFGEVGREVSAPLGPEFMNTFNLLN 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I +M P + FS+ + +Q + GGNL E + LS ILR R + K++ Sbjct: 196 YGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKLARKIK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +S E++ SAW++ PF + ++ P Y+ +L P G ++ + IG + +R Sbjct: 256 TISAESRMSAWVLVLAPFGLYVIISLVRPEYIELLHTHPMGIKMVIGGMVALFIGTLWIR 315 Query: 181 LMINFDV 187 ++N +V Sbjct: 316 KIVNIEV 322 >gi|107028241|ref|YP_625336.1| type II secretion system protein [Burkholderia cenocepacia AU 1054] gi|105897405|gb|ABF80363.1| type II secretion system protein [Burkholderia cenocepacia AU 1054] Length = 325 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 53/185 (28%), Positives = 104/185 (56%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 KR K P+ D+I R++R+G + + ++ + S+P+ EFR + + G Sbjct: 141 RCRAKRMRKLERQLPDICDMIARALRSGHSFTSTLGMVGDEFSEPMGGEFRVTFDEVNYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +SL ++++ + +P+Q++ +F + +Q + GGNL+E L +++ ++R+R + KV+ L Sbjct: 201 VSLHDALTNLATRVPVQDLRYFVIAVLIQRETGGNLAELLESIAGLIRERFKLFDKVRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAWI+G LPF + ++ + ++ VL DP G ++G ML G+ +R + Sbjct: 261 SAEGRLSAWILGLLPFGTAAVMALLNREFLLVLWEDPAGIRMVGTMLVSMLFGLFWIRRI 320 Query: 183 INFDV 187 + V Sbjct: 321 VRIRV 325 >gi|78060307|ref|YP_366882.1| Flp pilus assembly protein TadB [Burkholderia sp. 383] gi|77964857|gb|ABB06238.1| Flp pilus assembly protein TadB [Burkholderia sp. 383] Length = 325 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 54/181 (29%), Positives = 102/181 (56%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR K P+ D+I R++R+G + + ++ + DP+ EFR + + G+SL Sbjct: 145 KRMRKLERQLPDICDMISRALRSGHSFTSTLGMVGDEFPDPMGGEFRVTFDEVNYGVSLH 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + +P+Q++ +F + +Q + GGNL+E L +S ++R+R + KV+ LS E Sbjct: 205 DALMNLATRVPVQDLRYFVIAVLIQRETGGNLAELLDCISALIRERFKLFDKVRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWI+G LPF + ++ + +++VL DP G ++G ML G+ +R ++ Sbjct: 265 RLSAWILGLLPFGTAAVMALLNREFLSVLWEDPAGIRMVGGMLVSMLFGLFWIRRIVRIR 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|167584965|ref|ZP_02377353.1| type II secretion system protein [Burkholderia ubonensis Bu] Length = 325 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 51/183 (27%), Positives = 102/183 (55%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +R K P+ D+I R++R+G + A+ ++ + SDP+ EFR + + G+S Sbjct: 143 RARRMRKLERQLPDVCDMIARALRSGHAFTSAIGMVSDEFSDPMGGEFRITFDEINYGVS 202 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +++ + +P++++ +F + +Q + GGNL+E L +++ ++R+R + K++ LS Sbjct: 203 LHDALMNLANRVPVRDLRYFVIAVLIQRETGGNLAELLDSIAALIRERFKLFDKIRVLSA 262 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E + SAW++G LPF + + +P ++ VL D G ++ M G++ MR +I Sbjct: 263 EGRMSAWVLGLLPFATAGAMMVLNPEFLAVLWQDSAGIKMVATTLVSMAFGVLWMRRIIR 322 Query: 185 FDV 187 V Sbjct: 323 IHV 325 >gi|91777215|ref|YP_552423.1| putative type II secretion system protein F [Burkholderia xenovorans LB400] gi|91689875|gb|ABE33073.1| Putative type II secretion system protein F [Burkholderia xenovorans LB400] Length = 282 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 98/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K + KKR P+AL ++ ++RAG A+ +V +++ P+ EF ++ Sbjct: 96 LKRMRKKRIEALEKQLPDALLMMSGALRAGASFPAALEAVVYETAPPISQEFDLLMREIR 155 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L ++ + + +P+ ++ + +++ ++GGNL+EAL +++R LR++ M+ K++ Sbjct: 156 LGIDLDIAMRNVEKRIPIPDLLMMTAAVTIAREVGGNLAEALESVARTLREKLQMEGKIR 215 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + + ++ LP + ++ F M L ++P G L V +G + Sbjct: 216 ALTSQGRMQGIVMTCLPLFLMLVLRFMEAKAMAPLFSEPVGWATLAVIGVMECLGYFWIS 275 Query: 181 LMINFDV 187 + N DV Sbjct: 276 RITNIDV 282 >gi|144897190|emb|CAM74054.1| pilus assembly protein TadB [Magnetospirillum gryphiswaldense MSR-1] Length = 279 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 87/186 (46%), Positives = 122/186 (65%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R A+F F +ALDI+VR +R+GLP+ + +A+I + +P+ EFR V+E Q Sbjct: 93 VGWLGKRRIARFTTLFADALDIVVRGLRSGLPLGECMAIIGREVPEPLGPEFRLVMEGQK 152 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGLSL ES++R V P + +F+ V+ +Q Q GGNL+E LA LS +LR RK M+ K++ Sbjct: 153 LGLSLEESLARAVERTPTADFKYFAIVLGIQQQTGGNLAETLAKLSEVLRARKRMRDKIK 212 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A S EA ASA IIGSLP V+ L+ P Y+ +L + P GH+LL M +G +VMR Sbjct: 213 AFSSEATASAMIIGSLPVVVALLLTAVGPDYIGILFSTPTGHLLLASGGLLMGMGALVMR 272 Query: 181 LMINFD 186 MINFD Sbjct: 273 KMINFD 278 >gi|296156493|ref|ZP_06839331.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] gi|295893092|gb|EFG72872.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] Length = 325 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 105/177 (59%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 + P+A D+I R++RAG + ++ + DP+ EF V + + G+S+++++ Sbjct: 149 QLERQLPDAADLIARALRAGHSFPATLGMVGQELPDPLGGEFALVFDEINYGVSMNDALL 208 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 MV +P++++ +F + +Q + GGNL+E L ++S I+R+R + KV+ LS E + SA Sbjct: 209 NMVSRVPVEDLRYFVIAVLIQREAGGNLAEILGSISGIIRERLKLLGKVRVLSAEGRLSA 268 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 W++ LPF + L+ +PGY++V DP G L GVA ML GI+ MR ++ + Sbjct: 269 WVLAVLPFAILGLLTVLNPGYISVFWKDPAGVQLAGVAITMMLFGILWMRKIVRIHI 325 >gi|85707699|ref|ZP_01038765.1| hypothetical protein NAP1_00650 [Erythrobacter sp. NAP1] gi|85689233|gb|EAQ29236.1| hypothetical protein NAP1_00650 [Erythrobacter sp. NAP1] Length = 323 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 67/187 (35%), Positives = 117/187 (62%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + IKKRT F F + ++++VR +R+GLPV++ +AV+ + PV EF+ ++E Sbjct: 137 VSFFIKKRTNDFNAKFADGIELLVRGLRSGLPVTETLAVVAQEVPGPVGLEFKGIVERIK 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G ++ +S+ + + E +FF+ +++Q + GGNL+E L+NL+ +LR R MK K++ Sbjct: 197 IGKTMEDSLQETADRLGIPEFNFFTITLAIQRETGGNLAETLSNLADVLRKRTQMKLKIK 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E+KASA+I+GSLPF V L+Y +P Y+ + R + +M IGI +M Sbjct: 257 AMSSESKASAYIVGSLPFIVFGLIYSVNPSYIGGFFVEERLMVTGLGGLVWMSIGIFIMA 316 Query: 181 LMINFDV 187 M++F++ Sbjct: 317 KMVSFEI 323 >gi|90411199|ref|ZP_01219212.1| hypothetical Flp pilus assembly protein TadB [Photobacterium profundum 3TCK] gi|90328045|gb|EAS44366.1| hypothetical Flp pilus assembly protein TadB [Photobacterium profundum 3TCK] Length = 324 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 107/187 (57%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ +KR F + F ALD++ R++ G P ++ + + + PV EF + + Sbjct: 138 LKYKAEKRLCLFEEQFVEALDVMKRALLVGYPFTEVMKTVSQEMPAPVSVEFGKTFSELN 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + +++ + + P V F++ + +Q + GGNL+E L NLS ++R R + KV+ Sbjct: 198 YGVDIKVALANLAQRNPSVSVLAFNSAVIIQKETGGNLAETLENLSEVIRGRFRLLRKVR 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +LS E + SAWI+ +PF + ++Y ++P Y++ L RG LL + A ML+G++ +R Sbjct: 258 SLSAEGRMSAWILMCVPFVLVIMIYLSTPDYLDPLFESDRGANLLMITAVCMLVGMIWIR 317 Query: 181 LMINFDV 187 ++ +V Sbjct: 318 KILRIEV 324 >gi|114764950|ref|ZP_01444123.1| type II/IV secretion system protein, TadC subfamily [Pelagibaca bermudensis HTCC2601] gi|114542662|gb|EAU45686.1| type II/IV secretion system protein, TadC subfamily [Roseovarius sp. HTCC2601] Length = 321 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 57/187 (30%), Positives = 106/187 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR A + P+A++++VRS+R G P S A+AV+ + DP+ +EF + + Sbjct: 135 VNGKAKKRLALIEEQLPDAVELMVRSLRVGHPFSSAIAVVSKEIKDPLATEFGVIADEST 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + ES+ M + +Q++ F + +S+Q Q GGNL+E L L++++R R + +V+ Sbjct: 195 YGRDIGESLKHMAERLDMQDLRFLAVAVSIQQQSGGNLAEILEGLAKVIRARFRLFRRVK 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ S + P V ++ T P Y + +++ P + A F+ + +MVMR Sbjct: 255 AITAEAQWSGKFLSGFPVGVLLVIQLTDPHYYDEVLDHPWFVPACFIVAVFLALNLMVMR 314 Query: 181 LMINFDV 187 +++N V Sbjct: 315 MLVNIKV 321 >gi|283779213|ref|YP_003369968.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283437666|gb|ADB16108.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 321 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 58/185 (31%), Positives = 102/185 (55%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R A F P AL++I R++RAG ++ ++ + P+ EF R E Q+LG Sbjct: 137 MKRNRRLAHFARQLPEALELISRALRAGHSLASGFKLVADELGGPIAVEFERCYEAQNLG 196 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L E+I M +P ++ FF+T + +Q Q GG+L+E L + ++R+R + ++QAL Sbjct: 197 VPLEEAIDEMTVRVPNLDLRFFATAVILQRQTGGDLAEILDKIGHLVRERYKIWGQIQAL 256 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + S ++ +LP + +++ + Y L DP GH +L A LIG +V+R + Sbjct: 257 TGEGRLSGIVLLALPPVLFVVMWRLNQQYCMALFTDPMGHQMLAGAVVMQLIGALVIRKI 316 Query: 183 INFDV 187 +N V Sbjct: 317 VNIKV 321 >gi|146276357|ref|YP_001166516.1| type II secretion system protein [Rhodobacter sphaeroides ATCC 17025] gi|145554598|gb|ABP69211.1| type II secretion system protein [Rhodobacter sphaeroides ATCC 17025] Length = 322 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 100/187 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KKR A + P+A++++VRS+R G P S A+ ++ + DP+ +EF + + Sbjct: 136 VNNKAKKRMALIEEQLPDAVELMVRSLRVGHPFSSAIQIVAKEVPDPLGTEFGVIADEAA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++E I M Q++ F + +++Q Q GGNL+E L L++++R R + +V+ Sbjct: 196 YGRDVAECIRAFAERMDSQDLRFLAVAVNIQQQSGGNLAEILEGLAKVIRSRFKLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EAK S + + P ++ P Y + + P V AF++ ++ M+ Sbjct: 256 AITAEAKWSGTFLSAFPIVALVMISVLKPDYYDGVKETPLFIPAALVVGAFLVANVIFMK 315 Query: 181 LMINFDV 187 +M+N V Sbjct: 316 IMVNIKV 322 >gi|326388861|ref|ZP_08210443.1| type II secretion system protein [Novosphingobium nitrogenifigens DSM 19370] gi|326206461|gb|EGD57296.1| type II secretion system protein [Novosphingobium nitrogenifigens DSM 19370] Length = 323 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 69/187 (36%), Positives = 114/187 (60%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I KR F+ FP+AL+++VR +R+GLP+S+ + V+ + PV EF+ V + Sbjct: 137 VSWAINKRINNFITRFPDALELLVRGLRSGLPISETLVVVANELPGPVSEEFKIVTDRIR 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG ++ +++ + L E SFF +++Q + GGNL+E LANL+ +LR R MK K++ Sbjct: 197 LGRTMEDALQETADRLDLAEFSFFCITLAIQRETGGNLAETLANLADVLRKRAQMKLKIK 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E+KASA+I+GSLPF V L+Y +P Y+ D R + ++ +G +M Sbjct: 257 AMSSESKASAYIVGSLPFIVFALIYSINPRYLGQFFVDERLMVAGIGGLIWLSMGAFIMS 316 Query: 181 LMINFDV 187 M+NF++ Sbjct: 317 RMVNFEI 323 >gi|300856046|ref|YP_003781030.1| putative type II secretion system protein [Clostridium ljungdahlii DSM 13528] gi|300436161|gb|ADK15928.1| putative type II secretion system protein [Clostridium ljungdahlii DSM 13528] Length = 320 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 104/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ K R F + + II S++AG A+AV+ ++SDP EF+++++ Sbjct: 134 IRKRKKDRIKHFDSELNEGITIISNSLKAGYSFLQAIAVVSEETSDPFSKEFKKLLKEMS 193 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+S +++ ++ + +++ VI +Q +GGNLSE L N+S +R+R+ +K++++ Sbjct: 194 LGISEEDALKNLLSRVESEDLRLIVNVILIQKDIGGNLSEVLDNISETIRERQKIKSELK 253 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + + S I+ +P + +Y + Y+ +L G +++ A +G++++R Sbjct: 254 TLTAQGRLSGIILMLIPIFLGVTIYLFNKEYILLLFTTSIGLIMVAAAVLSEFLGLLIIR 313 Query: 181 LMINFDV 187 +IN D+ Sbjct: 314 KIINIDM 320 >gi|294140781|ref|YP_003556759.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12] gi|293327250|dbj|BAJ01981.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12] Length = 325 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 97/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR DFP+ LD+I R+++AG +DA+ + + P+ EF+ + + Sbjct: 139 LNRDTNKRMDTIEADFPDGLDVIRRALQAGYSFTDAIKLATEELEGPLAKEFKLMFVNIN 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + ++ ++ +P F++ + VQ + GGNL+E + NL+R++R R + +V+ Sbjct: 199 YTKDIKRALLGFIQRVPSVSALAFASAVMVQRETGGNLAENIENLTRVIRQRFKFRRRVK 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + SAWI+ LPF + ++Y +P Y+ L GH LL A M IG + Sbjct: 259 TLSAEGRLSAWILILLPFVLFAVIYLQTPSYVGELTGTEAGHKLLMWGAVGMTIGGWWIS 318 Query: 181 LMINFDV 187 +I DV Sbjct: 319 RIIKIDV 325 >gi|332188385|ref|ZP_08390110.1| bacterial type II secretion system F domain protein [Sphingomonas sp. S17] gi|332011614|gb|EGI53694.1| bacterial type II secretion system F domain protein [Sphingomonas sp. S17] Length = 327 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 68/187 (36%), Positives = 117/187 (62%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I +RT KF+ FP+A++++VR +R+GLP+++ ++V+ + PV EFR V + Sbjct: 141 VSMTINRRTTKFIARFPDAIELLVRGLRSGLPITETMSVVGQEIPGPVGDEFRAVSDRMK 200 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G ++ ++ + E FF I++Q + GGNL+E L+NL+ +LR R MK K++ Sbjct: 201 IGRTMDAALQETADRLETPEFQFFVIAIAIQRETGGNLAETLSNLAEVLRKRAQMKLKIK 260 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E+KASA+IIG+LPF V +++ + YM DPR ++ G +M +G+ +M Sbjct: 261 AMSSESKASAYIIGALPFVVFAMIWMINAPYMARFFVDPRLMIIGGGGLLWMALGVFIMS 320 Query: 181 LMINFDV 187 MINF++ Sbjct: 321 RMINFEI 327 >gi|157375502|ref|YP_001474102.1| Flp pilus assembly protein TadB [Shewanella sediminis HAW-EB3] gi|157317876|gb|ABV36974.1| conserved hypothetical Flp pilus assembly protein TadB [Shewanella sediminis HAW-EB3] Length = 325 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 96/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR FP+ALD++ R+++AG SDA+ + + P+ EF+ + + Sbjct: 139 LSRDTNKRMDAIEASFPDALDVVRRALQAGYSFSDAIKLATEELEGPIAKEFKLMFANIN 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + ++ + +P F++ + VQ + GGNL+E + +LSR++R+R + +V+ Sbjct: 199 YTKDVKRALLGFIERVPSISAMAFASAVMVQKETGGNLAENIESLSRVIRERFTFRRRVK 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + SAWI+ LPF + ++Y +P Y+ L G LL A M IG + Sbjct: 259 TLSAEGRLSAWILILLPFVLFAVIYLQTPSYVGELTGTEGGKKLLMWGAIGMTIGGWWIS 318 Query: 181 LMINFDV 187 +I D+ Sbjct: 319 KIIRIDM 325 >gi|163738366|ref|ZP_02145781.1| type II secretion system protein [Phaeobacter gallaeciensis BS107] gi|163742217|ref|ZP_02149605.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter gallaeciensis 2.10] gi|161384547|gb|EDQ08928.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter gallaeciensis 2.10] gi|161388287|gb|EDQ12641.1| type II secretion system protein [Phaeobacter gallaeciensis BS107] Length = 322 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 100/187 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR A + P+A++++VRS+R G P S AV ++ + DP+ +EF + + Sbjct: 136 VNKKAAKRMAMIEEQLPDAVELMVRSLRVGHPFSSAVQIVANEVEDPLATEFGVIADESA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+ Sbjct: 196 YGRDVGEALKEMAERLDMQDMRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ S + P + PGY + +I+ P V A + + + VMR Sbjct: 256 AITAEAQWSGKFLSGFPLFCLGGILAKDPGYYDSVIDHPWFIPACFVVGAMLTVNLFVMR 315 Query: 181 LMINFDV 187 ++ N V Sbjct: 316 MLTNIKV 322 >gi|89899610|ref|YP_522081.1| type II secretion system protein [Rhodoferax ferrireducens T118] gi|89344347|gb|ABD68550.1| type II secretion system protein [Rhodoferax ferrireducens T118] Length = 322 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 61/173 (35%), Positives = 106/173 (61%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 FP ALD++ R++RAG AV ++ + +DP+ +FR + + + G+ +++++ + Sbjct: 150 QFPEALDLMSRAMRAGHSFPSAVKMVADEMTDPLGHDFRVLFDEMNYGVPTNDALANLAE 209 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 +P+ +VS+F + +Q + GGNL+E L +S I+R+R + +V+ LS E K SA I+ Sbjct: 210 RVPVPDVSYFVVAVMIQRESGGNLAELLDKISLIVRERLKLLGEVRTLSAEGKLSAIILT 269 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 +LPF V +V +P +M VL DP G ++G+A ML+GI+ MR +I V Sbjct: 270 ALPFGVGLVVNLVNPKFMAVLWTDPAGLRMVGLALFMMLLGILWMRSIIRIRV 322 >gi|159043674|ref|YP_001532468.1| type II secretion system protein [Dinoroseobacter shibae DFL 12] gi|157911434|gb|ABV92867.1| type II secretion system protein [Dinoroseobacter shibae DFL 12] Length = 322 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 103/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + K+R A + P+A++++VRS+R G P S A+ ++ + +DP+ +EF + + Sbjct: 136 VNKKAKQRLAMIEEQLPDAVELMVRSLRVGHPFSSAINIVAKEVADPLGTEFGMIADEAA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++E++ + M +Q++ F + +S+QSQ GGNL+E L L++++R R + +V+ Sbjct: 196 YGRDVTEALKELAERMDMQDLRFLAVAVSIQSQSGGNLAEILDGLAKVIRARFKLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EAK S + PF + P Y + + P V A F+ I I+ M+ Sbjct: 256 AITAEAKWSGMFLSGFPFLALVGINLMEPDYYADVKDTPAFIPACVVVAVFLTINIIFMK 315 Query: 181 LMINFDV 187 +M+N V Sbjct: 316 MMVNIKV 322 >gi|302343415|ref|YP_003807944.1| Type II secretion system F domain protein [Desulfarculus baarsii DSM 2075] gi|301640028|gb|ADK85350.1| Type II secretion system F domain protein [Desulfarculus baarsii DSM 2075] Length = 322 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 59/187 (31%), Positives = 116/187 (62%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KR + F FP A++++ R++RAG S + ++ + +PV SEF + E Sbjct: 136 VSKIKAKRLSVFESQFPEAVELVGRALRAGHSFSAGLRMVGEELGEPVASEFNKTFEDYS 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++ E+++ +VR + L++V FF++ +S+Q + GGNL+E L N++ I+R+R ++ V+ Sbjct: 196 FGKTMEEALTGLVRRVELEDVKFFASAVSLQRETGGNLTEILDNIAYIIRERFRLQRTVR 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + S WI+ +P + ++Y+++P Y+N+ + +P G +L A ++GI+V++ Sbjct: 256 ALSAEGRLSGWILSLMPPALFAMLYWSTPEYINMALGNPIGQTILLSGACLEVLGIVVIK 315 Query: 181 LMINFDV 187 +I V Sbjct: 316 QIIKMRV 322 >gi|150377236|ref|YP_001313831.1| type II secretion system protein [Sinorhizobium medicae WSM419] gi|150031783|gb|ABR63898.1| type II secretion system protein [Sinorhizobium medicae WSM419] Length = 332 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 93/186 (50%), Positives = 131/186 (70%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + R AKF +FPNA+D+IVR ++AGLP+ D + VI ++ +PV+ EF +++ Q Sbjct: 146 VNIKRNARFAKFTAEFPNAVDVIVRGLKAGLPMPDCLRVIATEAQEPVKGEFLAIVQDQT 205 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ + E++ RM MPL E FF+ VI++QS+ GG+LSEAL NLS++LR+RK MKAK++ Sbjct: 206 LGIPVDEAVKRMSERMPLAEAHFFAIVIAIQSRTGGSLSEALGNLSKVLRERKKMKAKIK 265 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S EAK+SA IIG+LPF V+ VYF SP YM +L G ++L +M IGI+VMR Sbjct: 266 AMSSEAKSSAGIIGALPFLVAGAVYFASPDYMALLFATVTGKIVLVGCGLWMGIGILVMR 325 Query: 181 LMINFD 186 MINFD Sbjct: 326 KMINFD 331 >gi|327543263|gb|EGF29696.1| Flp pilus assembly protein TadB [Rhodopirellula baltica WH47] Length = 321 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 56/185 (30%), Positives = 102/185 (55%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 K+R +F + P AL+++ RS+RAG ++ ++ + P+ +EFRR E Q G Sbjct: 137 FKRKRRLKRFGEQIPEALELLGRSLRAGHSLNAGFGLVGDEMEAPLATEFRRCFEEQKFG 196 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L ESI M +P ++ FF+T + +Q Q GG+LSE L + ++R+R + +QAL Sbjct: 197 IPLDESIEDMAERVPNMDLRFFATAVILQRQTGGDLSEILDKIGHLVRERLQILGTIQAL 256 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + S ++ +LP + ++ + Y+ +L D G M LG+A ++G + ++ + Sbjct: 257 TGEGRMSGAVLLALPPVLFLVMLKINAEYVLMLFTDELGRMALGMALVTQVLGALAIKKI 316 Query: 183 INFDV 187 I V Sbjct: 317 ITIKV 321 >gi|328545275|ref|YP_004305384.1| Bacterial type II secretion system protein F domain [polymorphum gilvum SL003B-26A1] gi|326415017|gb|ADZ72080.1| Bacterial type II secretion system protein F domain [Polymorphum gilvum SL003B-26A1] Length = 339 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 88/186 (47%), Positives = 132/186 (70%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR FL++ PNA+DIIVR V+AGLP+ D + ++ ++ DPV EFR+++E Q Sbjct: 153 LARRRRKRFDAFLNELPNAVDIIVRGVKAGLPLGDCIKIVASEARDPVAGEFRKIVEAQV 212 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GL+L+E++ R+ +PL E +FF+ V+++Q Q GG LSEAL NL ++LR RK +K K++ Sbjct: 213 MGLTLTEAVGRLPDRVPLAEANFFAIVVAIQQQAGGGLSEALGNLGKVLRGRKTLKGKIR 272 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EAK+SA IIGSLPF VS ++Y +P Y+ +L + G+M++ +M IG MVM+ Sbjct: 273 ALSSEAKSSAAIIGSLPFIVSLILYLIAPDYIMLLFTETAGNMIIAGGLLWMFIGSMVMK 332 Query: 181 LMINFD 186 MINFD Sbjct: 333 NMINFD 338 >gi|254476377|ref|ZP_05089763.1| type II secretion system protein [Ruegeria sp. R11] gi|214030620|gb|EEB71455.1| type II secretion system protein [Ruegeria sp. R11] Length = 322 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 51/187 (27%), Positives = 100/187 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR + + P+A++++VRS+R G P + AV ++ + DP+ +EF + + Sbjct: 136 VNKKAAKRMSMIEEQLPDAVELMVRSLRVGHPFASAVQIVANEVEDPLATEFGIIADESA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+ Sbjct: 196 YGRDVGEALKEMAERLDMQDMRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ S + P + PGY + +I+ P V A + + + VMR Sbjct: 256 AITAEAQWSGKFLSGFPLFCLGGILAKDPGYYDSVIDHPWFIPACFVVGAMLTVNLFVMR 315 Query: 181 LMINFDV 187 ++ N V Sbjct: 316 MLTNIKV 322 >gi|17545370|ref|NP_518772.1| tight adherence TadB-related transmembrane protein [Ralstonia solanacearum GMI1000] gi|17427662|emb|CAD14181.1| probable pilus assembly tadb transmembrane protein [Ralstonia solanacearum GMI1000] Length = 325 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 96/185 (51%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 KR + + P A D++ R++RAG + A+ + + P+ +E V + G Sbjct: 141 RCRAKRLLRLEEQLPEAADLLSRALRAGHSLPSALDMAGSELPAPIGAELALVFSEINYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + ++++++ + +P++++ + + +Q + GGNL+E L N+ ++R R + KV+ L Sbjct: 201 VPMNDALAGLTDRVPIEDLHYLVIAVLIQRESGGNLAEILDNVGSLIRKRLQLLDKVRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + WI+ LP V +VY +P ++ L DP G +L A +G++ +R + Sbjct: 261 SAEGRMGGWILTLLPPVVGVIVYELNPDLISTLWKDPTGLKMLWYAITMTCVGVIWIRQI 320 Query: 183 INFDV 187 + + Sbjct: 321 VRIHI 325 >gi|77919351|ref|YP_357166.1| Flp pilus assembly protein TadB [Pelobacter carbinolicus DSM 2380] gi|77545434|gb|ABA88996.1| Flp pilus assembly protein TadB [Pelobacter carbinolicus DSM 2380] Length = 325 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 104/177 (58%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 A+F D P ALD++ R++R+G ++ + ++ + P+ SEF ++ +LGL+ E+ Sbjct: 148 ARFQDQLPEALDLLARALRSGHAMTSGLEMVAAEMDPPISSEFGAAVDEINLGLTFQEAF 207 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + +P ++ FF+ + +Q + GGN++E L ++SR++R+R K +V+AL+ E + S Sbjct: 208 ENLCERVPSTDLRFFAISVIIQRETGGNVAEILDSISRLIRERIQFKRQVKALTAEGRLS 267 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 A ++ LP + ++F + Y+++L +P G +L A ++G +++ ++ + Sbjct: 268 AMVLIGLPIALFGYIFFVNHQYLSLLWTEPLGQYMLAGAIVLQILGAFIIKKIVTIE 324 >gi|116748936|ref|YP_845623.1| type II secretion system protein [Syntrophobacter fumaroxidans MPOB] gi|116698000|gb|ABK17188.1| type II secretion system protein [Syntrophobacter fumaroxidans MPOB] Length = 321 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 111/187 (59%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + K+R KF P ALD++ R+++AG S + ++ + DP+ EF + ++ + Sbjct: 135 LMSRRKQRMEKFQRQLPEALDLVSRALKAGHAFSGGMKMVADEMDDPIGPEFDKTLDEIN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+S+++++ + + ++S+F + +Q + GGNL++ +A+++ ++R+R + +++ Sbjct: 195 FGVSVADALKNLAARVACPDLSYFVVAVLIQRESGGNLADLIASITHLIRERFKLYGRIR 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E +ASA I+ ++P V+ + S Y+ L +D G +L+G+A M+ G++VMR Sbjct: 255 VLSAEGRASAIILIAIPIFVAAALLVVSRSYITTLADDRIGRVLIGIAVCMMIFGVVVMR 314 Query: 181 LMINFDV 187 MI DV Sbjct: 315 KMIRIDV 321 >gi|87199098|ref|YP_496355.1| type II secretion system protein [Novosphingobium aromaticivorans DSM 12444] gi|87134779|gb|ABD25521.1| type II secretion system protein [Novosphingobium aromaticivorans DSM 12444] Length = 324 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 67/187 (35%), Positives = 114/187 (60%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I KR F+ P+ALD++VR +R+GLPV++ + V+ + PV EF+ V + Sbjct: 138 VGRAINKRIDNFVTRLPDALDLLVRGLRSGLPVTETLGVVAAELPGPVGEEFKLVTDRIK 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G ++ E++ + L E +FF +++Q + GGNL+E L+NLS +LR R MK K++ Sbjct: 198 VGRTMEEALQDTADRLNLPEFNFFCITLAIQRETGGNLAETLSNLSDVLRKRAQMKLKIK 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E+KASA+I+G+LPF V L+Y+ +P Y+ D R + ++ IG +M Sbjct: 258 AMSSESKASAYIVGALPFIVFALIYWINPVYLGKFFVDERLIIAGLGGLTWLGIGAFIMA 317 Query: 181 LMINFDV 187 M++F++ Sbjct: 318 KMVSFEI 324 >gi|148557758|ref|YP_001265340.1| type II secretion system protein [Sphingomonas wittichii RW1] gi|148502948|gb|ABQ71202.1| type II secretion system protein [Sphingomonas wittichii RW1] Length = 324 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 72/187 (38%), Positives = 112/187 (59%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R A+F+ FP+A++++VR +RAGLP+++ + + + PV SEF+ V + Sbjct: 138 LNILAKRRIAQFITRFPDAIELLVRGLRAGLPIAETMGAVASEIEGPVGSEFQAVSDRMR 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G +L ++ + E FF +++Q + GGNL+E L NL+ +LR R MK K+ Sbjct: 198 IGRTLEGALQETADRLGTAEFQFFVITLAIQRETGGNLAETLGNLADVLRKRMQMKLKIS 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E+KASA+IIG LPF V L+ F SP YM D R + +M IG +MR Sbjct: 258 AMSSESKASAYIIGVLPFVVFGLISFISPTYMAGFFADQRLMIAGAGGLIWMSIGAYIMR 317 Query: 181 LMINFDV 187 MINF++ Sbjct: 318 QMINFEI 324 >gi|103486614|ref|YP_616175.1| type II secretion system protein [Sphingopyxis alaskensis RB2256] gi|98976691|gb|ABF52842.1| type II secretion system protein [Sphingopyxis alaskensis RB2256] Length = 310 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 71/187 (37%), Positives = 112/187 (59%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + IKKR A+F FP+A+D++VR +R+GLPV++ V+ + PV EF+ V+E Sbjct: 124 VGMAIKKRVAQFNARFPDAIDLLVRGLRSGLPVTETFQVVSQELPGPVGEEFKGVVERIR 183 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G ++ ++ + E FF I +Q + GGNL+E LANLS +LR R MK K++ Sbjct: 184 IGNTMEAALQETAEMLGTPEFQFFCITIQIQRETGGNLAETLANLSDVLRKRAQMKLKIR 243 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S EAKASA+I+G+LPF V +V+ +P Y+ + R + +M IG +M Sbjct: 244 AMSSEAKASAYIVGALPFFVFGVVWTVNPSYLAGFFVEQRLIVAGIGGLIWMSIGAGIMA 303 Query: 181 LMINFDV 187 M+NF++ Sbjct: 304 KMVNFEI 310 >gi|296284555|ref|ZP_06862553.1| hypothetical protein CbatJ_13051 [Citromicrobium bathyomarinum JL354] Length = 323 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 69/187 (36%), Positives = 121/187 (64%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +K+RTA+F FP+A+D++VR +R+GLPV++ +AV+ + PV EF+ +IE Sbjct: 137 VGFFMKRRTAQFNARFPDAIDLLVRGLRSGLPVTETLAVVAQEIPGPVGIEFKGIIERIK 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S+ E++ + + E +FF +++Q + GGNL+E L+NLS +LR R MK K++ Sbjct: 197 IGRSMEEAMQESADRLGIAEFNFFVIALAIQRETGGNLAETLSNLSDVLRKRAQMKLKIK 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E+KASA+I+GSLPF V ++++ +P Y+ D R + +M +G+ +M Sbjct: 257 AMSSESKASAYIVGSLPFLVFAMIWWVNPSYLGAFFIDERLMIAGIGGLVWMSLGVFIMS 316 Query: 181 LMINFDV 187 M++F++ Sbjct: 317 KMVSFEI 323 >gi|170692560|ref|ZP_02883722.1| type II secretion system protein [Burkholderia graminis C4D1M] gi|170142216|gb|EDT10382.1| type II secretion system protein [Burkholderia graminis C4D1M] Length = 327 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 54/185 (29%), Positives = 103/185 (55%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +KR P A D+I R++RAG S A+ ++ + ++P+ EFR V + + G Sbjct: 143 RARRKRLRVLERQLPEAADMISRALRAGHSFSSALGMLGSEFAEPMAGEFRIVFDEINYG 202 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++L+E++ + +P+ ++ +F + +Q + GGNL+E L +++ ++R R + KV+ L Sbjct: 203 VTLNEALLNLATRVPVGDLRYFVIAVLIQRETGGNLAEILDSIASLVRARLQLFDKVRVL 262 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + S WI+ LPF + + +P + +VL DP G ++ M++GI+ MR + Sbjct: 263 SAEGRLSGWILALLPFASAGAMQVVNPTFFSVLWEDPAGLQIIETMLVSMVLGILWMRRI 322 Query: 183 INFDV 187 + V Sbjct: 323 VQIRV 327 >gi|255263835|ref|ZP_05343177.1| type II secretion system protein [Thalassiobium sp. R2A62] gi|255106170|gb|EET48844.1| type II secretion system protein [Thalassiobium sp. R2A62] Length = 322 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 100/187 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KKR A + P+A++++VRS+R G P + AVA++ + DP+ SE + + Sbjct: 136 VNNKAKKRLALIEEQLPDAVELMVRSLRVGHPFTSAVAIVAKEVPDPLGSEMGVISDEAA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + +Q++ F + +++Q Q GGNL+E L L++++R R + +V+ Sbjct: 196 YGRDVGEALKAMAERLEMQDMRFLAVAVTIQQQAGGNLAEILHGLAQVIRARFKLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EAK S + P ++ P Y + + V A F++ + VMR Sbjct: 256 AITAEAKWSGMFLSLFPLGALVMINVIQPNYYDAVSETSVFIPACLVVAGFLVANMFVMR 315 Query: 181 LMINFDV 187 +++N V Sbjct: 316 MLVNIKV 322 >gi|300692335|ref|YP_003753330.1| Tad secretion system, pilus assembly protein [Ralstonia solanacearum PSI07] gi|299079395|emb|CBJ52066.1| Tad secretion system, pilus assembly protein [Ralstonia solanacearum PSI07] Length = 325 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 92/177 (51%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 K P A D++ R++RAG A+ + + P+ SEF V + G+ + E+++ Sbjct: 149 KLEAQLPEATDLLARALRAGHSFPSALDMAGSELPAPIASEFALVFSEINYGVPMGEALA 208 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 R +P++++ F + +Q + GGNL+E L N+ ++R R + K++ LS E + Sbjct: 209 AFSRRVPIEDLRFLVIAVLIQRESGGNLAEILDNIGTLIRKRLQLLDKIRVLSAEGRLGG 268 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 WI+ +P + L+YF +P ++ L P G LL A +G++ +R ++ V Sbjct: 269 WILSLMPPVLGVLMYFLNPTLVSSLWTHPLGIQLLWAAIIMTGVGMLWIRHLVRIHV 325 >gi|225174957|ref|ZP_03728954.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] gi|225169597|gb|EEG78394.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] Length = 322 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 56/181 (30%), Positives = 101/181 (55%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + P AL+II +RAG A+AV+ + P+ EF RV+ LG S+ Sbjct: 142 RRMQALNNQLPEALNIISSGLRAGYSFPQAMAVVGREMDAPIADEFNRVLRDNRLGKSMD 201 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ M +++ T + +Q Q+GGN++E L + +R+R +K +++AL+ + Sbjct: 202 DALLEMTARTDNEDLDLVVTSLLIQRQVGGNMAEVLNKIEHTIRERMRIKGEIRALTAQQ 261 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SA II LP V+ L+ +P YM L+ +P G M+L +A ++GIM++R ++ + Sbjct: 262 RMSAVIIVLLPIAVALLLLVINPEYMLTLVTEPIGIMVLSIAVIMQIVGIMIIRRIVQIE 321 Query: 187 V 187 V Sbjct: 322 V 322 >gi|323529409|ref|YP_004231561.1| Type II secretion system F domain-containing protein [Burkholderia sp. CCGE1001] gi|323386411|gb|ADX58501.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1001] Length = 327 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 56/185 (30%), Positives = 104/185 (56%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 KR P A D+I R++RAG S A+ ++ + ++P EFR V + + G Sbjct: 143 RARSKRLRLLERQLPEAADMISRALRAGHSFSSAIGMLGNEFAEPTGGEFRIVFDEINYG 202 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++L+E++ + +P++++ FF + +Q + GGNL+E L ++ ++R+R + +V+ L Sbjct: 203 VTLNEALLNLATRVPVRDLRFFVIAVLIQRETGGNLAEILDGIASLVRERLRLFDQVRVL 262 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAWIIG LPF + + +P +++VL DP G ++ M+ G++ MR + Sbjct: 263 SAEGRLSAWIIGLLPFAAAGGMNLLNPSFLSVLWEDPAGLKVIEAVLVSMVFGVLWMRRI 322 Query: 183 INFDV 187 + V Sbjct: 323 VRIRV 327 >gi|253996762|ref|YP_003048826.1| type II secretion system protein [Methylotenera mobilis JLW8] gi|253983441|gb|ACT48299.1| type II secretion system protein [Methylotenera mobilis JLW8] Length = 322 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 58/184 (31%), Positives = 105/184 (57%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +KR P+ALD++ R++ AG A+ ++ + +P+ SEFR V + + G+ Sbjct: 139 AKQKRINTIEQQLPSALDLMGRAMVAGHAFPSALQMVGTEMPEPIASEFRIVFDEINYGI 198 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 SE++ +++ +P +VS+F + +Q + GGNL+E L N+S ++R R + V+ LS Sbjct: 199 PTSEALMNLIQRVPSTDVSYFVIAVLIQRETGGNLAELLGNISELIRARLKLLGSVRVLS 258 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAWI+ LPF + ++ +P ++++L DP G ++ +A M+ GI VM +I Sbjct: 259 AEGRLSAWILTLLPFALGAVLQLVNPKFLSILWTDPNGLKMVIIALILMVFGIFVMWRII 318 Query: 184 NFDV 187 V Sbjct: 319 KIRV 322 >gi|187251610|ref|YP_001876092.1| TadB [Elusimicrobium minutum Pei191] gi|186971770|gb|ACC98755.1| TadB [Elusimicrobium minutum Pei191] Length = 535 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 96/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+L ++R K + ++L ++ S++AG+ + A ++ P+ EF VI+ Sbjct: 349 LKNLKRRRGTKINNQLMDSLILLSNSLKAGMDIVQAFEMVSKDMKPPIADEFGLVIKNYQ 408 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S +++ M + + +S+ I +Q Q+GGNL++ + +R+ ++ K+Q Sbjct: 409 LGSSFEQALEMMEDRVENRLLSYMIKAIVLQRQVGGNLTKIFERIVETIREESKLEEKLQ 468 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ + + + ++G +P+ + ++++ P M G ++L ++L+G+ ++ Sbjct: 469 AMTAQQRIQSIVVGIMPWLMISVMFLFRPDAMINFYTSGIGLIVLFFCIFWILMGMKMVS 528 Query: 181 LMINFDV 187 + V Sbjct: 529 KLGEIKV 535 >gi|188581664|ref|YP_001925109.1| type II secretion system protein [Methylobacterium populi BJ001] gi|179345162|gb|ACB80574.1| type II secretion system protein [Methylobacterium populi BJ001] Length = 323 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 90/187 (48%), Positives = 136/187 (72%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K K+R A F+++ PNA+D++VR +R+G+P+ D + +I ++ +P+RSEFR +E Q Sbjct: 137 LKWRQKRRVAAFVEELPNAMDVVVRGLRSGIPLGDCLRMISREAKEPLRSEFRVAMEAQA 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GL +S++I RM +P+ EV+FFS VI +Q + GGNLSEAL+NLSR+LR+RK M K+Q Sbjct: 197 MGLPMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALSNLSRVLRERKKMAGKIQ 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIG+LPF + Y +SP Y ++L G + L ++ +ML G++VM+ Sbjct: 257 AMSMEAKASAGIIGALPFLIGGGTYLSSPDYTSLLWTTSVGKIALVISGLWMLAGVLVMK 316 Query: 181 LMINFDV 187 MI+FDV Sbjct: 317 KMISFDV 323 >gi|170740617|ref|YP_001769272.1| type II secretion system protein [Methylobacterium sp. 4-46] gi|168194891|gb|ACA16838.1| type II secretion system protein [Methylobacterium sp. 4-46] Length = 322 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 88/187 (47%), Positives = 141/187 (75%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L K+R A+F+ + PNA+D+IVR +++GLPV D + +I ++ +PVR+EFR ++E+Q Sbjct: 136 LGYLRKRRIARFVLELPNAMDVIVRGIKSGLPVGDCLRIIAREAPEPVRTEFRALVESQA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+SLSE+ +++ MP+ E +FF+ VI +Q++ GGNLSEAL NLSR+LRDR+ M KV Sbjct: 196 VGVSLSEAATKLFERMPVSEANFFAIVIGIQAKSGGNLSEALGNLSRVLRDRRRMADKVS 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEA+ASA II SLPF V+ L YF+SP Y+++L G + + ++ +M++G++VM+ Sbjct: 256 AMSMEARASAAIIASLPFVVAVLCYFSSPDYISLLWTTQVGQIAITLSGLWMVVGVLVMK 315 Query: 181 LMINFDV 187 MI F++ Sbjct: 316 RMITFEI 322 >gi|284991839|ref|YP_003410393.1| Type II secretion system F domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284065084|gb|ADB76022.1| Type II secretion system F domain protein [Geodermatophilus obscurus DSM 43160] Length = 310 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 93/186 (50%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R A F D ++L ++ S+RAG + AV + +++ P EF R++ Sbjct: 124 LGLKRGRRQAAFADQLDDSLQLMASSLRAGHSLLRAVDAVSTEAAAPTSEEFARIVNETR 183 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G L +++ + M + + + I + ++GGNL+E L + +R+R ++ +V+ Sbjct: 184 VGRDLGDALDEVAERMDSDDFRWVAQAIGIHREVGGNLAEVLDTVGHTIRERNAIRRQVK 243 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E K SA ++ +LPF + + T+P Y+ G++++ + +G + ++ Sbjct: 244 ALSAEGKLSAVVLMALPFGIVGFLSVTNPAYLAGFTEGLAGYLMIAAVVVLLTVGGLWLK 303 Query: 181 LMINFD 186 + Sbjct: 304 KTVAIR 309 >gi|283852077|ref|ZP_06369351.1| type II secretion system protein [Desulfovibrio sp. FW1012B] gi|283572467|gb|EFC20453.1| type II secretion system protein [Desulfovibrio sp. FW1012B] Length = 327 Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 113/187 (60%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR A F P AL+++ R+++AG S + ++V + ++P+R EF++ +E + Sbjct: 141 IAMRKAKRMAAFETQLPEALELVGRALKAGHTFSSGMGMVVSEFAEPIRGEFQKTMEEVN 200 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ ++ ++ ++ + +++FF + +Q++ GGNL+E + N++ ++R+R +K +++ Sbjct: 201 FGMGVTVALDNLMERVDCPDLNFFVISVKIQNETGGNLAEIVENIAWLIRERIKLKGRIR 260 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + +AW++ LPF V V +PGY+N+L + G L + A M +G++V+R Sbjct: 261 VLSAEGRMAAWVLCLLPFFVCGAVQMLNPGYLNLLFTEALGRFFLYLVAGLMTLGVLVIR 320 Query: 181 LMINFDV 187 M+ DV Sbjct: 321 KMVRIDV 327 >gi|284048523|ref|YP_003398862.1| Type II secretion system F domain protein [Acidaminococcus fermentans DSM 20731] gi|283952744|gb|ADB47547.1| Type II secretion system F domain protein [Acidaminococcus fermentans DSM 20731] Length = 321 Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 91/187 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I +R F + L ++ S+RAG + +I + P+ +EF V+ Sbjct: 135 LQRRISRRKEAFERQLADCLTLVSNSLRAGFSFLQTMEIISREMQPPMSTEFANVMRNTS 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG ++ +++ M + + ++ S T + +Q Q+GGNL+ L + + +R ++ +V Sbjct: 195 LGRTMEDALQEMDQRVGNEDFSLVITAVLIQQQVGGNLATILDTIRETISERIRLRREVG 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + K S ++ +P + TSP Y+ L+ G M +G A +IG +++ Sbjct: 255 TLTAQGKFSGLVLTCIPVALGLFFAVTSPEYLKPLLTTSIGKMAIGAAVVMEIIGYLIIS 314 Query: 181 LMINFDV 187 +++ + Sbjct: 315 RIVDIKI 321 >gi|307726379|ref|YP_003909592.1| type II secretion system F domain-containing protein [Burkholderia sp. CCGE1003] gi|307586904|gb|ADN60301.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1003] Length = 327 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 56/185 (30%), Positives = 102/185 (55%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 KR P A D+I R++RAG S A+ ++ + ++P EFR V + + G Sbjct: 143 RARSKRLRVLERQLPEAADMISRALRAGHSFSSAIGMLGNEFAEPTGGEFRIVFDEINYG 202 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++L+E++ + +P+ ++ +F + +Q + GGNL+E L ++ ++R+R + +V+ L Sbjct: 203 VTLNEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAEILDGIASLVRERLRLFDQVRVL 262 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAWIIG LPF + + +P +++VL DP G L+ M G++ MR + Sbjct: 263 SAEGRLSAWIIGLLPFAAAGAMNLLNPSFLSVLWEDPAGLKLIEAVLVSMAFGVLWMRRI 322 Query: 183 INFDV 187 + V Sbjct: 323 VRIRV 327 >gi|167566942|ref|ZP_02359858.1| Flp pilus assembly protein TadB [Burkholderia oklahomensis EO147] gi|167574011|ref|ZP_02366885.1| Flp pilus assembly protein TadB [Burkholderia oklahomensis C6786] Length = 325 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 104/177 (58%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 K P+A D+I R++RAG S A++++ G+ ++P+ EFR + + G+ L E++ Sbjct: 149 KLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYGVPLQEALL 208 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + +P+ ++ +F + +Q + GGNL+E L ++ ++R+R + KV+ LS E K SA Sbjct: 209 NLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKVRVLSAEGKLSA 268 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 WI+ LPF + L+ +P ++ VL DP G +L+GV M GI+ MR +I V Sbjct: 269 WILTLLPFGTAALLAIMNPDFIAVLWQDPAGVLLVGVTITSMAFGIVWMRYIIRIRV 325 >gi|83943935|ref|ZP_00956392.1| type II/IV secretion system protein, TadC subfamily protein [Sulfitobacter sp. EE-36] gi|83954508|ref|ZP_00963219.1| type II/IV secretion system protein, TadC subfamily protein [Sulfitobacter sp. NAS-14.1] gi|83840792|gb|EAP79963.1| type II/IV secretion system protein, TadC subfamily protein [Sulfitobacter sp. NAS-14.1] gi|83845182|gb|EAP83062.1| type II/IV secretion system protein, TadC subfamily protein [Sulfitobacter sp. EE-36] Length = 320 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 100/187 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR + P+A++++VRS+R G P + A++++ + DP+ SEF + + Sbjct: 134 ISSKAKKRMDMIEEQLPDAVELMVRSLRVGHPFTSAISIVSKEIQDPLASEFGVIADETA 193 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+ Sbjct: 194 YGRDIGEALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFRLFRRVR 253 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EAK S + + P ++ P Y + ++ P F+ + ++VMR Sbjct: 254 AITAEAKWSGKFLSAFPILALIVIKLGDPHYYDEVMTHPLFIPGCIAVVLFLSLNLIVMR 313 Query: 181 LMINFDV 187 + + V Sbjct: 314 KLTDIKV 320 >gi|77462449|ref|YP_351953.1| putative Flp pilus assembly protein TadB [Rhodobacter sphaeroides 2.4.1] gi|126461327|ref|YP_001042441.1| type II secretion system protein [Rhodobacter sphaeroides ATCC 17029] gi|221638312|ref|YP_002524574.1| Type II secretion system protein [Rhodobacter sphaeroides KD131] gi|77386867|gb|ABA78052.1| Putative Flp pilus assembly protein TadB [Rhodobacter sphaeroides 2.4.1] gi|126102991|gb|ABN75669.1| type II secretion system protein [Rhodobacter sphaeroides ATCC 17029] gi|221159093|gb|ACM00073.1| Type II secretion system protein [Rhodobacter sphaeroides KD131] Length = 322 Score = 114 bits (284), Expect = 7e-24, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 98/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR A + P+A++++VRS+R G P S A+ ++ + DP+ +EF + + Sbjct: 136 VNGKAKKRMALIEEQLPDAVELMVRSLRVGHPFSSAIQIVAKEVPDPLGTEFGVIADEAA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++E I M Q++ F + +++Q Q GGNL+E L L++++R R + +V+ Sbjct: 196 YGRDVAECIRAFAERMESQDLRFLAVAVTIQQQSGGNLAEILEGLAKVIRSRFKLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EAK S + + P + P Y + + P V AF++ ++ M+ Sbjct: 256 AITAEAKWSGTFLSAFPIVALVAISILKPDYYDGVKETPLFIPAALVVGAFLIANVIFMK 315 Query: 181 LMINFDV 187 +M+N V Sbjct: 316 IMVNIKV 322 >gi|319782177|ref|YP_004141653.1| type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168065|gb|ADV11603.1| Type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 322 Score = 114 bits (284), Expect = 7e-24, Method: Composition-based stats. Identities = 62/185 (33%), Positives = 108/185 (58%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + KR KF P+ALD+IVRS+RAG P S A+ ++ + DP+ +EF V + Sbjct: 137 RRARNKRIRKFAKQLPDALDMIVRSLRAGHPASVAIGLVAREMPDPLGTEFGIVSDEITF 196 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GLS+ +++ ++ + + + + S +S+QS+ GGNL+E LANLS ++R+R+ ++ K++A Sbjct: 197 GLSIEQAVRKLSQRVGFEGLQLLSVSLSIQSKTGGNLTEILANLSSVMRERQKLRMKIRA 256 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 LS E + SAWII P + + +P Y + ++P + + + L+G +M Sbjct: 257 LSAEGRVSAWIISLFPIVMFFTLQILAPTYYGAVWSNPLVFPVFLIFGLWALLGDFIMYR 316 Query: 182 MINFD 186 M+ FD Sbjct: 317 MVTFD 321 >gi|254461341|ref|ZP_05074757.1| type II secretion system protein [Rhodobacterales bacterium HTCC2083] gi|206677930|gb|EDZ42417.1| type II secretion system protein [Rhodobacteraceae bacterium HTCC2083] Length = 322 Score = 114 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 103/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H KKR + + P+A++++VRS+R G P S AV ++ + DP+ SE + + Sbjct: 136 ISHKAKKRMSMLEEQLPDAVELMVRSLRVGHPFSSAVQIVAKEVQDPLASEMGVIADESA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + Q++ F + +++Q Q GGNL+E LA L++++R R + +V+ Sbjct: 196 YGRDVGEALKAMAERLDNQDLRFLAVAVTIQQQSGGNLAEILAGLAQVIRARFRLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ S + S P + P Y + +++ + AAF+ + ++VMR Sbjct: 256 AITAEAQWSGKFLSSFPLMALVAIQLGDPNYYDPVLDHEWFIPACFLVAAFLGVNLIVMR 315 Query: 181 LMINFDV 187 +++N V Sbjct: 316 ILVNIKV 322 >gi|313902405|ref|ZP_07835808.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM 13965] gi|313467336|gb|EFR62847.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM 13965] Length = 367 Score = 114 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 45/187 (24%), Positives = 98/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R F P+AL ++ ++++G A V+ + P+ EF +++ Sbjct: 181 LARRYQQRLRAFDGQLPDALTLMANALKSGYSFLQAADVVAREMPPPIADEFAWLVKETR 240 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + + L ++++ ++ +P ++ T + +Q Q+GGNL+ L + +R+R ++ +++ Sbjct: 241 VNIPLEDALANLLDRVPSADLDLVVTAVLIQKQVGGNLAGVLERTAETIRERVRLQGQIR 300 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + + S WI+G+LP + L+ +P Y+ L+ P G LLG G++V+R Sbjct: 301 TLTAQGRLSGWIVGALPVALLVLLSAMNPAYLQPLLATPLGWTLLGAGVVMEAAGVLVIR 360 Query: 181 LMINFDV 187 +I DV Sbjct: 361 ALIRVDV 367 >gi|126729094|ref|ZP_01744908.1| type II/IV secretion system protein, TadC subfamily [Sagittula stellata E-37] gi|126710084|gb|EBA09136.1| type II/IV secretion system protein, TadC subfamily [Sagittula stellata E-37] Length = 321 Score = 114 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 98/184 (53%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 KKR + + P+A++++VRS+R G P + A+ ++ + DP+ +EF + + G Sbjct: 138 KAKKRLSMIEEQLPDAVELMVRSLRVGHPFTSAITIVSKEIKDPLATEFGIIADESAYGR 197 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + E++ M + +Q++ F + +++Q Q GGNL+E L L++++R R + +V+A++ Sbjct: 198 DIGEALKHMAERLDMQDLRFLAVAVAIQQQAGGNLAEILEGLAKVIRARFRLFRRVKAIT 257 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ S + P + P Y + +++ P + + + ++VMR ++ Sbjct: 258 AEAQWSGKFLSGFPVMALIFIQVAKPDYYDEVLDHPWFIPACFIVGIMLALNMIVMRWLV 317 Query: 184 NFDV 187 N V Sbjct: 318 NIKV 321 >gi|78357407|ref|YP_388856.1| hypothetical protein Dde_2364 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219812|gb|ABB39161.1| membrane protein, putative [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 321 Score = 114 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 51/184 (27%), Positives = 104/184 (56%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +R +F P+ALD+I R+++AG + ++ + +DPV EF+ ++ + G+ Sbjct: 138 RRTRRMNRFHRQLPDALDLIARALKAGHAFPQGMRMVADEFADPVGPEFQITLDEINFGV 197 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S ++ M R + ++ FF +++Q + GGNL+E ++ ++ +LR+R + +V+ LS Sbjct: 198 SPDAALHAMTRRVDCADLRFFVVSVNIQRETGGNLAEIVSGIALLLRERFKLHGRVKVLS 257 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + +AWI+ +LPF + +++ +P +M+ L P G+MLL + M G + ++ + Sbjct: 258 AEGRLTAWILFALPFGIGFIIHLLNPDFMSALYTTPEGNMLLNGSLFLMTAGALALKKLT 317 Query: 184 NFDV 187 V Sbjct: 318 TIRV 321 >gi|303241710|ref|ZP_07328207.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] gi|302590711|gb|EFL60462.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] Length = 327 Score = 114 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 103/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K IKKR D +A+ +I S++AG AV ++ + + P+ EF ++ + + Sbjct: 141 IKIKIKKRLRILNDQLNDAIVLISNSLKAGYSFFQAVDIVSKEMTGPMAEEFAQLQKEVN 200 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + +++ +V + ++ T + +Q Q+GGNLSE L N+S +R+R +K +V+ Sbjct: 201 FGTTTEKALENLVTRVTSDDLELVVTAVLIQRQVGGNLSEVLDNISTTIRERIRIKGEVK 260 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ + + S II +LP + +++ + ++ VL DP G ++LG + +IGI + Sbjct: 261 TVTAQGRMSGMIIAALPPALGFILFLINKSHVMVLFTDPIGLIILGFSVFMEIIGIYFIS 320 Query: 181 LMINFDV 187 +++ +V Sbjct: 321 RIVSIEV 327 >gi|116620535|ref|YP_822691.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116223697|gb|ABJ82406.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 323 Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats. Identities = 60/187 (32%), Positives = 104/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ KR A + FP +LD + RS+RAG S ++ ++ + +DP+ EFR + Q+ Sbjct: 137 VRQKRSKRLATLEEQFPESLDFLARSMRAGHAFSISLEMLGEELADPLGQEFRALFNEQN 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG L ++ +PL +V FF++ + +Q Q GGNLSE LA L+ ++R+R +K +V+ Sbjct: 197 LGAPLDTALRNFTTRVPLLDVRFFTSSVLLQKQTGGNLSEILARLAYVIRERFRLKGQVK 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A S + +A I+ LP + +PGY+ + +D G L+G A ++G ++ Sbjct: 257 AASAHGRLTATILTLLPVGTMLALLVVAPGYLQGMADDSDGKYLIGGAIVAQVLGNYFIK 316 Query: 181 LMINFDV 187 +IN V Sbjct: 317 RIINIKV 323 >gi|297618077|ref|YP_003703236.1| type II secretion system F domain protein [Syntrophothermus lipocalidus DSM 12680] gi|297145914|gb|ADI02671.1| Type II secretion system F domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 329 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 99/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++H +R F +AL I+ ++RAG A+ + + P+ +EF + Sbjct: 143 LQHKKGERLKTFNQQLGDALVIMANALRAGFGFQQAMETVRRELPPPISTEFEWTLREIQ 202 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + ES+ + + ++ T + +Q Q+GGNL++ L N+SR +RDR +K +++ Sbjct: 203 LGSTTEESLLNLCERVKSDDLDMVVTAVLIQRQVGGNLAQILDNISRTIRDRTRIKGEIR 262 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + + S IIG LP + ++ +PGYM + +P G LL AA L G+ V++ Sbjct: 263 TLTAQGRLSGIIIGLLPIALLFILLILNPGYMTPFLQNPLGLYLLSGAAVSELAGLYVIK 322 Query: 181 LMINFDV 187 +++ DV Sbjct: 323 KIVDIDV 329 >gi|260428144|ref|ZP_05782123.1| type II secretion system protein [Citreicella sp. SE45] gi|260422636|gb|EEX15887.1| type II secretion system protein [Citreicella sp. SE45] Length = 321 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 106/187 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR + + P+A++++VRS+R G P S A++V+ + DP+ +EF + + Sbjct: 135 VNGKARKRLSLIEEQLPDAVELMVRSLRVGHPFSSAISVVSCEIKDPLATEFGIIADEST 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + ES+ M + +Q++ F + +++Q Q GGNL+E L L++++R R + +V+ Sbjct: 195 YGRDIGESLKHMAERLDMQDLRFLAVAVTIQQQSGGNLAEILEGLAKVIRARFRLFRRVK 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ S + P V ++ T P Y + +++ P + A F+ + ++VMR Sbjct: 255 AITAEAQWSGKFLSGFPVAVLLIIQLTDPHYYDEVLDHPWFIPACFIVAIFLALNLIVMR 314 Query: 181 LMINFDV 187 +++N V Sbjct: 315 MLVNIKV 321 >gi|332560333|ref|ZP_08414655.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N] gi|332278045|gb|EGJ23360.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N] Length = 322 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 98/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR A + P+A++++VRS+R G P S A+ ++ + DP+ +EF + + Sbjct: 136 VNGKAKKRMALIEEQLPDAVELMVRSLRVGHPFSSAIQIVAKEVPDPLGTEFGVIADEAA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++E I M Q++ F + +++Q Q GGNL+E L L++++R R + +V+ Sbjct: 196 YGRDVAECIRAFAERMESQDLRFLAVAVTIQQQSGGNLAEILEGLAKVIRSRFKLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EAK S + + P + P Y + + P V AF++ ++ M+ Sbjct: 256 AITAEAKWSGTFLSAFPIVALVAISILKPDYYDGVKETPLFIPAALVVGAFLIANVIFMK 315 Query: 181 LMINFDV 187 +M+N V Sbjct: 316 IMVNIKV 322 >gi|149178504|ref|ZP_01857092.1| secretion system protein TadB [Planctomyces maris DSM 8797] gi|148842619|gb|EDL56994.1| secretion system protein TadB [Planctomyces maris DSM 8797] Length = 310 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 96/186 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KKR ++ P +D++ RS AG + A+A++ ++ P+ EFRR Sbjct: 124 LHYRRKKRMQTIQEELPEMIDLLARSTHAGASLEQAIAIVGEETKGPLSFEFRRCARQLD 183 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + LS+ + + + L ++ ++ + + + GGNL L ++ ++RDR N + +++ Sbjct: 184 MNLSVPAVMKSLSSRIQLIDLKILTSTLMLYRKTGGNLPANLERMADVVRDRINYRRQMK 243 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A + +ASA ++ + ++ P +++ L DP G++LL +A +IGI+ + Sbjct: 244 ASTGAGRASALLMTVVAPVAFVVLLVAFPAHVSNLYTDPIGNILLLIAIVLEVIGILWVS 303 Query: 181 LMINFD 186 ++ D Sbjct: 304 TLLRTD 309 >gi|323529157|ref|YP_004231309.1| Type II secretion system F domain-containing protein [Burkholderia sp. CCGE1001] gi|323386159|gb|ADX58249.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1001] Length = 282 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 47/186 (25%), Positives = 95/186 (51%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K + KKR P+AL ++ ++RAG A+ +V ++ P+ EF ++ L Sbjct: 97 KRMHKKRVEAIEKQLPDALLMMSGALRAGASFPTALEAVVHETPPPISQEFDLLMREIRL 156 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L ++ + + +P+ + + +++ ++GGNL+EAL +++R LR++ M+ K++A Sbjct: 157 GIDLDIAMRNVEKRIPIPDFLMMTAAVTIAREVGGNLAEALESVARTLREKLTMEGKIKA 216 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ + + ++ LP + ++ F P M L P G L V L+G + Sbjct: 217 LTSQGRMQGIVMTCLPLFLMLVLRFMEPKAMAPLFTKPVGWATLAVIGVMELLGYFSISK 276 Query: 182 MINFDV 187 + + DV Sbjct: 277 ITHIDV 282 >gi|307726637|ref|YP_003909850.1| type II secretion system F domain-containing protein [Burkholderia sp. CCGE1003] gi|307587162|gb|ADN60559.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1003] Length = 282 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 47/185 (25%), Positives = 94/185 (50%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + KKR P+AL ++ ++RAG A+ +V ++ P+ EF ++ LG Sbjct: 98 RMRKKRIEVIEQQLPDALLMMSGALRAGASFPTALEAVVHETPPPISQEFDLLMREIRLG 157 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L ++ + + +P+ + + +++ ++GGNL+EAL +++R LR++ M+ K++AL Sbjct: 158 IDLDIAMRNVEKRIPVPDFLMMTAAVTIAREVGGNLAEALESVARTLREKLTMEGKIRAL 217 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + + ++ LP + ++ F P M L P G L V L+G + + Sbjct: 218 TSQGRMQGIVMTCLPLFLMLVLRFMEPKAMAPLFTQPVGWATLAVIGVMELLGYFSISKI 277 Query: 183 INFDV 187 N DV Sbjct: 278 TNIDV 282 >gi|260431088|ref|ZP_05785059.1| type II/IV secretion system protein, TadC subfamily [Silicibacter lacuscaerulensis ITI-1157] gi|260414916|gb|EEX08175.1| type II/IV secretion system protein, TadC subfamily [Silicibacter lacuscaerulensis ITI-1157] Length = 322 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 97/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H KKR A + P+A++++VRS+R G P ++ ++ + DP+ +EF + + Sbjct: 136 VNHKAKKRMALLEEQLPDAVELMVRSLRVGNPFVSSIQIVANEVQDPLGTEFGVIADECA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + +Q++ F + + +Q Q GGNL+E LA L++++R R + +V Sbjct: 196 YGRGVGEALKDMAERLDMQDLRFLAVAVGIQQQSGGNLAEILAGLAKVIRARFRLFRRVN 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EAK S + P + P Y + +++ P + + ++VMR Sbjct: 256 AITAEAKWSGKFLSGFPVFCLVFILVKDPNYYDTVLDHPWFIPACFFVGIMLTLNLIVMR 315 Query: 181 LMINFDV 187 ++ N V Sbjct: 316 ILTNIKV 322 >gi|86137997|ref|ZP_01056573.1| type II/IV secretion system protein, TadC subfamily protein [Roseobacter sp. MED193] gi|85825589|gb|EAQ45788.1| type II/IV secretion system protein, TadC subfamily protein [Roseobacter sp. MED193] Length = 322 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 96/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR A + P+A++++VRS+R G P + V ++ + DP+ +EF + + Sbjct: 136 VNRKAGKRMALIEEQLPDAVELMVRSLRVGHPFNSTVQIVAHEIEDPLATEFGIIADECA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + +Q++ F S +++Q Q GGNL+E LA L++++R R + +V+ Sbjct: 196 YGRDIGEALKEMAERLDIQDLRFLSVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ S + + P P Y + +++ P + + + VMR Sbjct: 256 AITAEAQWSGKFLSAFPLLALIGTLLKDPNYYDDVMDHPYFIPACFFVGIMLTVNLFVMR 315 Query: 181 LMINFDV 187 ++ N V Sbjct: 316 VLTNIKV 322 >gi|323702117|ref|ZP_08113785.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM 574] gi|323532999|gb|EGB22870.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM 574] Length = 323 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 104/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +KR AKF +AL I+ S+R+G A+ ++ + +P+ EF R + Sbjct: 137 LRMARQKRLAKFNAQIGDALVIMANSLRSGFSFLQAMDMVRKELPNPISREFGRAFQEMS 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG E++ M + + ++ T + +Q Q+GGNL+E L N++ +R+R +K +++ Sbjct: 197 LGTPTEEALQNMAQRVKSDDLDLVITAVLIQRQVGGNLAEVLDNIADTIRERVRIKGQIR 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +++ + + S +IG LPF ++ L+ SP Y+ L N G +++ A +IG++ ++ Sbjct: 257 SITAQGRISGMVIGFLPFALAALMLVISPQYIMTLFNSKIGLIMVASAIFSEVIGVVAIK 316 Query: 181 LMINFDV 187 +++ +V Sbjct: 317 KIVDIEV 323 >gi|325964117|ref|YP_004242023.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans Sphe3] gi|323470204|gb|ADX73889.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans Sphe3] Length = 309 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 93/186 (50%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L +R AKF + + +++ +R G V +V ++ P E R++ Sbjct: 123 LAILRDRRRAKFEGQLTDTIQMLIGGLRVGHSVLRSVEAAAQEADVPTSEELLRIVNETR 182 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G + + M ++ + S I + ++GG+L+E L ++ +R+R +K +++ Sbjct: 183 IGKDSRLAFEDVAERMDSEDFRWISQAIQINREVGGDLAEVLEQVAGTIRERSEIKGQIR 242 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +LS E K SA+++ ++P V+ ++ F + GY+NV + P G ++L +A +G M Sbjct: 243 SLSAEGKMSAYVLMAMPVGVAFILAFINSGYLNVFVEKPLGLVMLVMAIVMFTVGGFWMS 302 Query: 181 LMINFD 186 ++ Sbjct: 303 RVVKIK 308 >gi|317154601|ref|YP_004122649.1| type II secretion system F domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316944852|gb|ADU63903.1| Type II secretion system F domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 324 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 115/187 (61%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ L +R +F P ALD++ R+++AG + ++ + +DP+ EF + ++ + Sbjct: 138 LRRLKARRMGRFQAQLPEALDLMSRALKAGHTFGGGMRMVANEFADPIGGEFGKTLDEIN 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + +++ + + ++++ FF +++Q + GGNL+E +AN++R++R+R + KV+ Sbjct: 198 YGMDVDRALANLQLRVDVEDLKFFVVSVNIQRETGGNLAEIIANIARLVRERFALFGKVR 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + SA ++ +LPF ++ ++YF +P Y+++L + G + A A M++GI+VMR Sbjct: 258 VLSAEGRISALLLSALPFFIAGVLYFINPDYISLLWTNELGRSMAWGAVASMIVGIVVMR 317 Query: 181 LMINFDV 187 M+ V Sbjct: 318 RMVKIQV 324 >gi|83312844|ref|YP_423108.1| Flp pilus assembly protein TadB [Magnetospirillum magneticum AMB-1] gi|82947685|dbj|BAE52549.1| Flp pilus assembly protein TadB [Magnetospirillum magneticum AMB-1] Length = 330 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 80/187 (42%), Positives = 122/187 (65%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR F F +ALD++VR +R+GLP+ + +A+I + DPV +EFR++ E Sbjct: 144 LGMAAGKRLKAFASQFADALDVVVRGIRSGLPLGECIAIIGREMPDPVGAEFRQITEGTR 203 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GL+L E++ R V MP+ E+ +F+ V+++Q Q GGNL+E LA LS +LR RK M+ KVQ Sbjct: 204 IGLTLHEALGRAVERMPMAEMRYFAIVLAIQQQTGGNLAETLAKLSDVLRARKRMRDKVQ 263 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A + EA+ASA IIGSLP V ++ +P Y+ +L G++LL + +G++VMR Sbjct: 264 AYAAEARASAAIIGSLPLVVVGMLGLVAPQYIALLFTSDLGNILLAIGVGTEAMGVLVMR 323 Query: 181 LMINFDV 187 MINFD+ Sbjct: 324 NMINFDI 330 >gi|219850072|ref|YP_002464505.1| type II secretion system protein [Chloroflexus aggregans DSM 9485] gi|219544331|gb|ACL26069.1| type II secretion system protein [Chloroflexus aggregans DSM 9485] Length = 332 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 98/191 (51%), Gaps = 4/191 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K +R F + + + ++ ++R G + ++ ++ DP +EFRRV++ Sbjct: 142 VKVRAAQRVKAFNNQLGDVITMMANALRGGYSFLQTLDMVAREAPDPASTEFRRVVQEVG 201 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S E++ ++R +P ++ T +S+Q ++GGNL++ L + +R+R +K ++ Sbjct: 202 LGRSTEEALQNLLRRVPSDDLDLLVTAVSIQMEVGGNLAQVLDTIGHTIRERVRIKGEIS 261 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLL-GVAAAFMLIGI 176 L+ + + S+WII LP ++ + +P YM L P+ + + + +G Sbjct: 262 TLTAQGRISSWIITGLPIGLAAFITVVNPDYMAPLFTFGLPPQAWCCMPVTSLFMIALGY 321 Query: 177 MVMRLMINFDV 187 ++ +I+ +V Sbjct: 322 FAIQKIIDIEV 332 >gi|56697923|ref|YP_168294.1| TadC family type II/IV secretion system protein [Ruegeria pomeroyi DSS-3] gi|56679660|gb|AAV96326.1| type II/IV secretion system protein, TadC subfamily [Ruegeria pomeroyi DSS-3] Length = 322 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 100/187 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR + + P++++++VRS+R G P+ A+ ++ +S DP+ +EF + + Sbjct: 136 VNQKAKKRLSLIEEQLPDSVELMVRSLRVGHPLVSAIQIVAKESEDPIATEFGIIADEAA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + +Q++ F S +++Q Q GGNL+E LA L++++R R + +V+ Sbjct: 196 YGREVGEALKEMAERLDMQDLRFLSVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ S + + P + P Y + +++ V + + + VMR Sbjct: 256 AITAEAQWSGKFLSAFPLGALLFILVKDPNYYDGVMDHELFIPACFVVGVMLTMNLFVMR 315 Query: 181 LMINFDV 187 ++ N V Sbjct: 316 MLTNIKV 322 >gi|325518834|gb|EGC98408.1| flp type pilus assembly protein [Burkholderia sp. TJI49] Length = 325 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 53/177 (29%), Positives = 101/177 (57%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 K P+ D+I R++R+G + A+ ++ + +P+ EFR + + G+SL +++ Sbjct: 149 KLQRQLPDVCDMIARALRSGHAFTGALGMVGEEFPEPMGGEFRITFDEINYGVSLHDALM 208 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + +P+Q++ +F + +Q + GGNL+E L +++ ++R+R + KV+ LS E + SA Sbjct: 209 NLATRVPVQDLRYFVIAVLIQRETGGNLAELLDSIAGLIRERFKLFDKVRVLSAEGRLSA 268 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 WI+G LPF + L+ + +++VL DP G + G M+ G+ MR +I V Sbjct: 269 WILGLLPFGTAALMALLNRDFLSVLWEDPAGVRMTGTMLVSMVFGLFWMRRIIRIRV 325 >gi|46580528|ref|YP_011336.1| hypothetical protein DVU2123 [Desulfovibrio vulgaris str. Hildenborough] gi|46449947|gb|AAS96596.1| membrane protein, putative [Desulfovibrio vulgaris str. Hildenborough] gi|311234267|gb|ADP87121.1| Type II secretion system F domain protein [Desulfovibrio vulgaris RCH1] Length = 321 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 52/185 (28%), Positives = 108/185 (58%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R A+F P+ALD++ R++RAG + + ++ + DP+ EF++V++ + G Sbjct: 137 RKRARRMARFQRQLPDALDLVGRALRAGHAFNQGMRMVADEFEDPIGPEFQKVLDEINYG 196 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + ++ +VR + ++ FF +++Q + GGNL+E + ++R++R+R + +V+ L Sbjct: 197 VPADTALINLVRRVDCPDLKFFVVSVNIQRETGGNLAEIVTGIARLIRERFKLAGRVRVL 256 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + +AWI+ +LPF + ++ +P +M+VL P G++L+ + M IG + ++ M Sbjct: 257 SAEGRLTAWILLALPFGIGIIINMLNPDFMSVLYETPEGNLLMTGSLFQMTIGAIALKRM 316 Query: 183 INFDV 187 V Sbjct: 317 TTIRV 321 >gi|294012232|ref|YP_003545692.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S] gi|292675562|dbj|BAI97080.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S] Length = 333 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 59/187 (31%), Positives = 101/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R K + FP ALD VR +RAG P++ A+ ++ + DP+ SEF V++ Sbjct: 147 LTRLAQRRRKKMEEQFPVALDTFVRGLRAGHPIAAALDLLTKEMRDPIGSEFGIVVDEVT 206 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +++ RM + E+ F +SVQS+ GGNL+E L NLS ++R+R ++ KV+ Sbjct: 207 YGSDLRDALQRMAERWDMNEMHMFVISLSVQSETGGNLAEILENLSTVIRERASLFMKVR 266 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + +A ++ +LP ++ +P + + D + LIG +R Sbjct: 267 ALSSEGRMTAVMLTALPILAFVGLFLVNPAFYLDVAQDSMFIIGFVGLIVLYLIGFFTIR 326 Query: 181 LMINFDV 187 M++ V Sbjct: 327 RMVDLKV 333 >gi|120602155|ref|YP_966555.1| type II secretion system protein [Desulfovibrio vulgaris DP4] gi|120562384|gb|ABM28128.1| type II secretion system protein [Desulfovibrio vulgaris DP4] Length = 321 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 52/185 (28%), Positives = 108/185 (58%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R A+F P+ALD++ R++RAG + + ++ + DP+ EF++V++ + G Sbjct: 137 RKRDRRMARFQRQLPDALDLVGRALRAGHAFNQGMRMVADEFEDPIGPEFQKVLDEINYG 196 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + ++ +VR + ++ FF +++Q + GGNL+E + ++R++R+R + +V+ L Sbjct: 197 VPADTALINLVRRVDCPDLKFFVVSVNIQRETGGNLAEIVTGIARLIRERFKLAGRVRVL 256 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + +AWI+ +LPF + ++ +P +M+VL P G++L+ + M IG + ++ M Sbjct: 257 SAEGRLTAWILLALPFGIGIIINMLNPDFMSVLYETPEGNLLMTGSLFQMTIGAIALKRM 316 Query: 183 INFDV 187 V Sbjct: 317 TTIRV 321 >gi|46204164|ref|ZP_00050408.2| COG4965: Flp pilus assembly protein TadB [Magnetospirillum magnetotacticum MS-1] Length = 188 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 91/187 (48%), Positives = 134/187 (71%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R A F+++ PNA+D+IVR +R+G+P+ D + +I ++ +P+RSEFR +E Q Sbjct: 2 LSRLQKRRVAAFVEELPNAMDVIVRGLRSGIPLGDCLRMISREAKEPLRSEFRIAMEAQA 61 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGL++ ++I RM +P+ EV+FF+ VI +Q + GGNLSEAL NLSR+LR+RK M K+Q Sbjct: 62 LGLAMPDAILRMCERVPVTEVNFFAVVIGIQQKSGGNLSEALGNLSRVLRERKKMAGKIQ 121 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIG+LPF V+ Y +SP Y +L G + L ++ +M +GI VM+ Sbjct: 122 AMSMEAKASAVIIGALPFFVALATYLSSPDYTALLWTTAVGKIALVLSGLWMALGIFVMK 181 Query: 181 LMINFDV 187 MI+FDV Sbjct: 182 KMISFDV 188 >gi|292491526|ref|YP_003526965.1| type II secretion system protein [Nitrosococcus halophilus Nc4] gi|291580121|gb|ADE14578.1| type II secretion system protein [Nitrosococcus halophilus Nc4] Length = 323 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 103/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ KR KF + P ALDI+ R+++AG P + + V + DP+ EFR + Sbjct: 137 IRIERDKRIGKFEEQLPEALDIMSRAMKAGYPFVETLHVASEEMRDPLAKEFRTTFADIN 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+++ + +++ +P + T + VQ GGNL+E L ++ ++R R + KV+ Sbjct: 197 YGMNIKTAFLSLLQRVPSMSLMAVVTGVLVQRDTGGNLAEILEKIAAVVRGRFRFQRKVR 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + E + SAWI+ +PF +S ++ +P Y+ +L+ +P G L+ +A +++G+ MR Sbjct: 257 TFTAEGRLSAWILTLVPFVLSAALHVINPEYLPMLVKEPLGRTLILLAFINIMVGVFWMR 316 Query: 181 LMINFDV 187 +I DV Sbjct: 317 RIIRIDV 323 >gi|59713407|ref|YP_206182.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrio fischeri ES114] gi|59481655|gb|AAW87294.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrio fischeri ES114] Length = 307 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 50/182 (27%), Positives = 88/182 (48%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L K+ +F + FP+AL+++ +V AG + AV + V EF+R+ E LG Sbjct: 122 WLRKREKNRFEESFPDALNMMSSAVSAGEGIMQAVVFVGRSLDGKVGKEFKRMGEQLQLG 181 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S + P FF + Q GG L E + L+R++ + ++ K AL Sbjct: 182 ESPDTVFRKSCERFPYPSFQFFIITLRTSMQRGGQLKEVMKRLNRLMFGARAIEKKKLAL 241 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ASA I+ ++PF ++ + SP ++ +P G +L IGI+++ L+ Sbjct: 242 TSEARASAKIVAAIPFIFLFMLQYLSPENYEFVMFNPAGRPILYYVLISESIGILIIWLL 301 Query: 183 IN 184 + Sbjct: 302 MR 303 >gi|197118216|ref|YP_002138643.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem] gi|197087576|gb|ACH38847.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem] Length = 316 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 105/187 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KKR F + P+A+ ++ RS+RAG ++ AV +I + +P+ F+ E Q Sbjct: 130 LNYHRKKRRRLFAEQLPDAMVMMARSLRAGHSLAAAVELIGLELPEPIGGLFKLAYEQQK 189 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ +++S+ + + Q+ +FF TV + S+ GGNLSE L L+ LR R ++ +V+ Sbjct: 190 LGVRIADSLISLRERVESQDFNFFLTVTRINSESGGNLSEILDKLAETLRSRLQIRRQVE 249 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ E + S +++ +LP + +Y PGY++V ++LG A ++G ++R Sbjct: 250 VITAEGRISGYVLVALPVVMFAGLYLLRPGYLDVFFTQRLCQLILGAAVLGQVVGFFIIR 309 Query: 181 LMINFDV 187 ++N + Sbjct: 310 KIVNISI 316 >gi|320101694|ref|YP_004177285.1| type II secretion system F domain-containing protein [Isosphaera pallida ATCC 43644] gi|319748976|gb|ADV60736.1| Type II secretion system F domain protein [Isosphaera pallida ATCC 43644] Length = 331 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 56/188 (29%), Positives = 104/188 (55%), Gaps = 1/188 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++ KKR F P AL++ R++RAG + + ++ + + P+ EF RV E Q+ Sbjct: 144 LNYMKKKRINDFTAAMPEALELTGRALRAGHGLGSGLKMVADEMTGPIAEEFGRVFEEQN 203 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ + E++ M +P +V FF T + +Q Q GG+L E L +S ++R R +K +V Sbjct: 204 LGIPMEEALRAMANRIPTMDVRFFVTAVVIQRQTGGDLGEVLDKISHLIRQRFEIKGQVA 263 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP-RGHMLLGVAAAFMLIGIMVM 179 AL+ E + S ++ ++P + ++ T+ Y+ L DP G +L AA ++G + + Sbjct: 264 ALTGEGRLSGAVLLAMPPLLLLYLFMTNRPYVMPLFTDPELGQPMLIGAAVLQILGALAI 323 Query: 180 RLMINFDV 187 R +++ V Sbjct: 324 RKIVDIKV 331 >gi|127511577|ref|YP_001092774.1| type II secretion system protein [Shewanella loihica PV-4] gi|126636872|gb|ABO22515.1| type II secretion system protein [Shewanella loihica PV-4] Length = 283 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 50/186 (26%), Positives = 100/186 (53%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L K+R KF+ P+AL++I S+++G VS+A+ + + P++ EF+ + Q L Sbjct: 98 QFLHKRRRRKFVHQLPDALNMIASSMQSGANVSNAIEFMAEEMEAPIKQEFQLFLREQRL 157 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ + ++ M + +P +E + + + ++GGNL+E L LS LR + M+ K+ A Sbjct: 158 GVEFNTALDNMFKRIPEEEFQLVTAGMQISREVGGNLAEVLQRLSATLRKKIEMEGKIDA 217 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ + K ++ LP + ++Y P M ++ +P G L+ + + G + +R Sbjct: 218 LTSQGKMQGIVMTLLPVFIGVVLYHMEPSAMGRILTEPMGWALIALVIIMLTSGYLSIRK 277 Query: 182 MINFDV 187 ++ DV Sbjct: 278 IVAIDV 283 >gi|119717341|ref|YP_924306.1| type II secretion system protein [Nocardioides sp. JS614] gi|119538002|gb|ABL82619.1| type II secretion system protein [Nocardioides sp. JS614] Length = 326 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 101/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R F P L ++ S+ AGL ++ + + + +DPV +EFRR + Sbjct: 140 LGVRRGRRRKAFSAAVPETLQLMSGSLSAGLSLAQSAETVTREGADPVAAEFRRALVETR 199 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L +++ + ++++ I +Q Q+GGNL+E L ++ +R+R+ ++ +V Sbjct: 200 LGVPLEDALEGVADRFDSADLAWAVMAIRIQRQVGGNLAELLDTVAETMREREYVRRQVA 259 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + SAW++GSLP T + + Y+ L DPRG +LL AA ++ +G M Sbjct: 260 ALSAEGRLSAWVLGSLPVAFLTYLLLVNREYVMPLFEDPRGIVLLAGAALWLAVGAFWMS 319 Query: 181 LMINFDV 187 ++ +V Sbjct: 320 RLVRVEV 326 >gi|218887823|ref|YP_002437144.1| type II secretion system protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758777|gb|ACL09676.1| type II secretion system protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 321 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 106/187 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ R +F P+ALD+I R+++AG + + ++ + +DP+ EF++ ++ + Sbjct: 135 VQRKRNARMGRFQRQLPDALDLIARALKAGHAFNQGMRMVADEFADPIGPEFQKTLDEIN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ ++ + R + ++ FF +++Q + GGNL+E + N++R++R+R + +V+ Sbjct: 195 FGIPADAALYNLTRRVDCPDLKFFVVSVNIQRETGGNLAEIVTNIARLIRERFKLAGRVR 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + +AWI+ LPF + ++ +P +M+ L P G+MLL + M IG + ++ Sbjct: 255 VLSAEGRLTAWILFVLPFGIGFIINLLNPDFMSALYATPEGNMLLTASLFQMAIGGIALK 314 Query: 181 LMINFDV 187 + V Sbjct: 315 RLTTIRV 321 >gi|254441335|ref|ZP_05054828.1| Bacterial type II secretion system protein F domain [Octadecabacter antarcticus 307] gi|198251413|gb|EDY75728.1| Bacterial type II secretion system protein F domain [Octadecabacter antarcticus 307] Length = 322 Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 54/184 (29%), Positives = 101/184 (54%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 KKR + + P+A++++VRS+R G P S AVA++ + DP+ +E + + G Sbjct: 139 KAKKRISMIEEQLPDAVELMVRSLRVGHPFSSAVAIVAKEVPDPLGTEMGVISDEAAYGR 198 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ES+ +M M +Q++ F + +++Q+ GGNL+E L LS+++R R + +V+A++ Sbjct: 199 DMGESLKQMADRMDMQDMRFLAVAVTIQATAGGNLAEILHGLSQVIRARFKLFRRVKAIT 258 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EAK S + P ++ P Y + + V AAF+++ ++VMR ++ Sbjct: 259 AEAKWSGMFLSVFPLGALVMINVLQPTYYDAVKETSVFIPACLVVAAFLVVNVIVMRRLV 318 Query: 184 NFDV 187 N V Sbjct: 319 NIQV 322 >gi|320161468|ref|YP_004174692.1| putative bacterial type II secretion system protein [Anaerolinea thermophila UNI-1] gi|319995321|dbj|BAJ64092.1| putative bacterial type II secretion system protein [Anaerolinea thermophila UNI-1] Length = 323 Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 53/193 (27%), Positives = 102/193 (52%), Gaps = 6/193 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K KR KF + P+ L+++V +RAG A+ + + P+ EFRRV++ Sbjct: 131 VKSQQAKRLVKFNEQLPDMLNLMVNGLRAGYSTMQAMEAVSKELPPPICDEFRRVVQEMQ 190 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ + +++ ++R +P ++ T I+VQ ++GGNL+E L +S +R+R +K +++ Sbjct: 191 LGVPMQQALDNLLRRIPSDDLDLVVTAINVQREVGGNLAEILDTISFTIRERVRIKGEIR 250 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI------NDPRGHMLLGVAAAFMLI 174 L+ + S + +P V ++Y + YM N P G++ L AA ++ Sbjct: 251 VLTTQVMYSGRFLAMMPIFVMGVLYLLNRPYMMEFFKPENNANLPCGYIALVCAAILIIS 310 Query: 175 GIMVMRLMINFDV 187 G +VM + + +V Sbjct: 311 GYVVMNKIGDIEV 323 >gi|89068022|ref|ZP_01155439.1| type II/IV secretion system protein, TadC subfamily protein [Oceanicola granulosus HTCC2516] gi|89046261|gb|EAR52318.1| type II/IV secretion system protein, TadC subfamily protein [Oceanicola granulosus HTCC2516] Length = 322 Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 97/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR + + P+A++++VRS+R G P S A+ ++ + +DP+ +E + + Sbjct: 136 VNSKAKKRMSMIEEQLPDAVELMVRSLRVGHPFSSAINIVAKEVADPLGTEMGVIADEAA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + ES+ M M +Q++ F + +++Q GGNL+E L L++++R R + +V+ Sbjct: 196 YGRDMGESLKAMAERMDMQDLRFLAVAVTIQQTSGGNLAEILDGLAKVIRARFRLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EAK S + P + P Y + ++ V AF+++ + VMR Sbjct: 256 AITAEAKWSGMFLSGFPLLALVAINLLQPNYYDDVMETAVFIPACLVVGAFLVVNVFVMR 315 Query: 181 LMINFDV 187 + N V Sbjct: 316 HLTNIKV 322 >gi|187921508|ref|YP_001890540.1| type II secretion system protein [Burkholderia phytofirmans PsJN] gi|187719946|gb|ACD21169.1| type II secretion system protein [Burkholderia phytofirmans PsJN] Length = 282 Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 45/187 (24%), Positives = 97/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KKR P+AL ++ ++RAG A+ +V +++ P+ EF ++ Sbjct: 96 LARMRKKRIGTLEKQLPDALLMMSGALRAGASFPSALEAVVHETTPPISQEFDLLMREIR 155 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ + ++ + + +P+ + + +++ ++GGNL+EAL +++R LR++ M+ K++ Sbjct: 156 LGIDMDIAMRNVEKRIPIPDFLMMTAAVTIAREVGGNLAEALESVARTLREKLQMEGKIK 215 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + + ++ LP + ++ F P M L +P G L V +G + + Sbjct: 216 ALTSQGRMQGIVMTCLPLFLMLVLRFMEPKAMAPLFTEPVGWATLAVIGVMEFLGYVSIS 275 Query: 181 LMINFDV 187 + N DV Sbjct: 276 KITNIDV 282 >gi|254486637|ref|ZP_05099842.1| type II secretion system protein [Roseobacter sp. GAI101] gi|214043506|gb|EEB84144.1| type II secretion system protein [Roseobacter sp. GAI101] Length = 317 Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 71/187 (37%), Positives = 114/187 (60%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + A F D P ALDI R +RAG PV+D++A++V + P+ EF R + Sbjct: 131 LSIAQSRYKATFAADLPEALDIFARGLRAGRPVTDSMAIVVDNAKGPILREFTRCHDEVR 190 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G +L E++ R+ +PL EV+FF+ ++Q++ GGNL E + NL+ LR+R+ ++ K + Sbjct: 191 MGNTLPETLERLSARLPLPEVTFFAVATALQAETGGNLIETMENLATQLRERRKLRKKAR 250 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EA+ASA I+ +LPF V+ L+ + Y+ L +DPRG + AA+ + +GI VM Sbjct: 251 ALSSEARASAVILAALPFAVAVLIAVLNGDYLEPLYSDPRGRFMSVTAASSIGLGIFVMV 310 Query: 181 LMINFDV 187 M +V Sbjct: 311 RMGKLNV 317 >gi|163751751|ref|ZP_02158969.1| hypothetical Flp pilus assembly protein TadB [Shewanella benthica KT99] gi|161328403|gb|EDP99562.1| hypothetical Flp pilus assembly protein TadB [Shewanella benthica KT99] Length = 325 Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 95/187 (50%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR FP+ LD+I R+++AG +DA+ + + P+ EF+ + + Sbjct: 139 LNRDTNKRMDTIEASFPDGLDVIRRALQAGYSFTDAIKLATEELEGPLAKEFKLMFVNIN 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + ++ ++ +P F++ + VQ + GGNL+E + NL+R++R R + +V+ Sbjct: 199 YTKDIKLALLGFIQRVPSVSALAFASAVMVQRETGGNLAENIENLTRVIRQRFKFRRRVK 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + SAWI+ LPF + ++Y +P Y+ L G LL M+IG + Sbjct: 259 TLSAEGRLSAWILILLPFALFAVIYLQTPAYVGELTGTEAGQKLLMWGGVGMIIGGWWIS 318 Query: 181 LMINFDV 187 +I DV Sbjct: 319 RIIKIDV 325 >gi|121607250|ref|YP_995057.1| type II secretion system protein [Verminephrobacter eiseniae EF01-2] gi|121551890|gb|ABM56039.1| type II secretion system protein [Verminephrobacter eiseniae EF01-2] Length = 290 Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 60/186 (32%), Positives = 106/186 (56%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + + K+R KF + P+AL ++ +RAGL +S A+A +V +S P+ EF ++ Q L Sbjct: 105 RQMRKRRLRKFEEQLPDALMMLSGGLRAGLGLSSAMAQLVAESGPPLSQEFSLMLREQRL 164 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G++L +++S + MP Q ++ + + ++ GG L+E L S +R R M+AK+ A Sbjct: 165 GVTLEQALSNLNHRMPTQTTVLITSAMRIANETGGGLAETLERTSATIRSRLRMQAKIGA 224 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ + K AW++G+LP + ++ P M++L + G L V A F +G+ V+R Sbjct: 225 LTAQGKLQAWVVGALPIALMLILNEMEPQAMSMLWHTRVGWATLAVIALFEFLGVYVIRK 284 Query: 182 MINFDV 187 +I DV Sbjct: 285 IIAIDV 290 >gi|197117443|ref|YP_002137870.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem] gi|197086803|gb|ACH38074.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem] Length = 320 Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 57/187 (30%), Positives = 106/187 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ ++R+ KF + FP+AL I RS+RAG A+ ++ + PV F+ E Q Sbjct: 134 LRVKTERRSIKFTEQFPDALSIAARSLRAGHSFPTAIQLVGQEVPSPVGPLFKTAYEQQQ 193 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGL + +++ RM + ++ FF+T++++ S +GGNLSE L L+ +R+R ++ +VQ Sbjct: 194 LGLRMVDALMRMNERIDSLDLRFFTTLVAINSDIGGNLSELLDKLAMTIRERLKIRRQVQ 253 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + + S +++ +LP + +P Y LI +P G +L AAA +IG +V+R Sbjct: 254 VYTAQGRLSGYVLAALPIATFGIFSVLNPNYERALIREPLGLYVLAGAAAMQIIGFLVIR 313 Query: 181 LMINFDV 187 ++ + Sbjct: 314 KIVRIRI 320 >gi|253701803|ref|YP_003022992.1| type II secretion system protein [Geobacter sp. M21] gi|251776653|gb|ACT19234.1| type II secretion system protein [Geobacter sp. M21] Length = 320 Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 58/187 (31%), Positives = 107/187 (57%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ ++RT +F + FP+AL I RS+RAG A+ ++ ++ PV FR E Q Sbjct: 134 LRVKTERRTTRFTEQFPDALSIAARSLRAGHSFPTAIQLVGQEAPSPVGPLFRTAYEQQQ 193 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGL + +++ RM + ++ FF+T++++ S +GGNLSE L L+ +R+R ++ +VQ Sbjct: 194 LGLRMVDALMRMNERIDSLDLRFFTTLVAINSDIGGNLSELLDKLAMTIRERLKIRRQVQ 253 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + + S +++ +LP + P Y LIN+P G +L AAA ++G +V+R Sbjct: 254 VYTAQGRLSGYVLAALPIATFGIFSMLHPNYERALINEPLGLYVLIGAAAMQIVGFLVIR 313 Query: 181 LMINFDV 187 ++ + Sbjct: 314 KIVRIRI 320 >gi|255020084|ref|ZP_05292155.1| type II secretion system protein [Acidithiobacillus caldus ATCC 51756] gi|254970446|gb|EET27937.1| type II secretion system protein [Acidithiobacillus caldus ATCC 51756] Length = 284 Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 90/187 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L K+R + D P+ L ++ ++R G + + + S P+ E V+ Q Sbjct: 98 LLYLKKRRFLRLHDQLPDTLLMMASALRGGANLGQTLEGLAKDMSPPMNQELSLVVREQR 157 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ E++S + + Q+ + + + ++GGNL++ L L +R R M+ K++ Sbjct: 158 LGVPFEEAVSHLAERVRSQDFDLVVSALRINREVGGNLADTLQRLGETVRRRLMMEQKIR 217 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + K ++ +LP + + P L + RG +L +A ++G +R Sbjct: 218 ALTSQGKLQGIVMTALPVLIILALLRIEPAATGALFDTYRGWAVLAIAIVLEILGYWGIR 277 Query: 181 LMINFDV 187 +++ +V Sbjct: 278 KIVSIEV 284 >gi|197337544|ref|YP_002157816.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11] gi|197314796|gb|ACH64245.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11] Length = 307 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 50/182 (27%), Positives = 88/182 (48%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L K+ +F + FP+AL+++ +V AG + AV + V EF+R+ E LG Sbjct: 122 WLRKREKNRFEESFPDALNMMSSAVSAGEGIMQAVVFVGRSLDGKVGKEFKRMGEQLQLG 181 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S + P FF + Q GG L E + L+R++ + ++ K AL Sbjct: 182 ESPDTVFRKSCERFPYPSFQFFIITLRTSMQRGGQLKEVMKRLNRLMFGARAIEKKKLAL 241 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ASA I+ ++PF ++ + SP ++ +P G +L IGI+++ L+ Sbjct: 242 TSEARASAKIVAAIPFIFLFMLQYLSPENYEFVMFNPAGRPILYYVLISESIGILIIWLL 301 Query: 183 IN 184 + Sbjct: 302 MR 303 >gi|295700366|ref|YP_003608259.1| type II secretion system F domain protein [Burkholderia sp. CCGE1002] gi|295439579|gb|ADG18748.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1002] Length = 325 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 56/177 (31%), Positives = 108/177 (61%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 + P+ D++ R++R+G + A+ ++ + ++P+ EFR V + + G+S+SE+++ Sbjct: 149 QLERQLPDVCDMLSRALRSGHAFTGAIDMVGAEFTEPMSGEFRIVFDEINYGVSISEALT 208 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + +P++++ +F + +Q + GGNL+E L ++ ++RDR + KV+ LS E + SA Sbjct: 209 NLATRVPIRDLRYFVIAVVIQRETGGNLAEVLDGITALIRDRFKLFDKVRVLSAEGRMSA 268 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 W++G LPF V + +PG++NVL DP G ++ A+ ML GI+ MR ++ V Sbjct: 269 WVLGLLPFGVGGAMMAINPGFLNVLWRDPAGVRMIAAASVAMLFGILWMRHIVKIRV 325 >gi|258405284|ref|YP_003198026.1| Type II secretion system F domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257797511|gb|ACV68448.1| Type II secretion system F domain protein [Desulfohalobium retbaense DSM 5692] Length = 323 Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 99/176 (56%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 F+ P LD++ RS++AG + + + + DP+ EF ++ + G+ + +++ + Sbjct: 148 FMAQLPEGLDLLARSLKAGHAFTTGMKLAAEEFGDPLGPEFDVALDEINFGVPVPDALRK 207 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + +++FF + +Q + GGNL+E + +++ ++R+R KV+AL+ E S W Sbjct: 208 MTYRVDCPDLNFFVVAVIMQRETGGNLAEIIESIATLIRERFKFFGKVKALAAEGVLSMW 267 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 ++ LPF + ++ F +P Y+ +L + GH+++ A M+IG MR ++ DV Sbjct: 268 VLIGLPFAIVGILTFMNPEYITLLFEETMGHIMIAGALIMMIIGYFFMRNIVKIDV 323 >gi|116626773|ref|YP_828929.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116229935|gb|ABJ88644.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 325 Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 58/185 (31%), Positives = 103/185 (55%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + +R KF + P+A+D+ R++RAG + + I ++SDPV+ EF++++E LG Sbjct: 141 RVRGRRLHKFEEMLPDAIDLFTRTMRAGHNIHSGLETIATETSDPVKMEFKKLMEELALG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + ++ + + +PL ++ FF T + +Q Q G N+ L NLS ++R+R NM AK++A Sbjct: 201 SQVEPALHGLGKRVPLIDLKFFITSLILQRQTGANMVSVLENLSTLVRERLNMAAKMKAH 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + + SA ++ LP V + P Y+ +L DP G A +GI+V+R + Sbjct: 261 TAQQRFSAGLLCCLPLVVGIGFWILKPEYVRLLWTDPVGSKFFTYAIISEFVGILVIRKI 320 Query: 183 INFDV 187 N V Sbjct: 321 ANIKV 325 >gi|156741662|ref|YP_001431791.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] gi|156232990|gb|ABU57773.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] Length = 327 Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 41/191 (21%), Positives = 101/191 (52%), Gaps = 4/191 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + K+R KF + ++++ S+R+G + ++ ++ ++ +P SE+RRV++ Sbjct: 137 VGYAAKQRVTKFNAQLGDTINMLANSLRSGYSLLQSMELVSREAPEPTASEYRRVVQEVG 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGL +++ +++ +P +++ T + +Q + GGNL++ L + +R+R +K ++ Sbjct: 197 LGLRTEDALDNLLKRVPSEDLDLLITAVKIQMESGGNLAQILDTIGHTIRERIRIKGEIA 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHMLL--GVAAAFMLIGI 176 L+ + + SA++I LP ++ + +P YM+ + P H ++IG Sbjct: 257 VLTAQGRISAYVITGLPIGLAIFITVINPNYMSPMFSFGMPPEHWCCLPVAGIVMIVIGF 316 Query: 177 MVMRLMINFDV 187 + +++ +V Sbjct: 317 FAIMKIVDIEV 327 >gi|86360588|ref|YP_472476.1| putative tadB pilus assembly protein [Rhizobium etli CFN 42] gi|86284690|gb|ABC93749.1| putative tadB pilus assembly protein [Rhizobium etli CFN 42] Length = 317 Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 57/184 (30%), Positives = 103/184 (55%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R KF P ALD+ RS+ AG P+ A+A++ + DP+ +EF + + G Sbjct: 133 RARARRMKKFELKLPEALDVANRSLAAGHPLPAAIALVAREMPDPIGTEFGLLSDELTYG 192 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++L +++ + + +++++ + +SVQ+ GGNL E L NLS+ LR R +KAKV+A+ Sbjct: 193 VTLDDALVNLADRVGVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRGRTMLKAKVRAI 252 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + +A + PF + ++ SP Y + L + G ++ V M IG +++ M Sbjct: 253 SSEGRITAIFMSVYPFLLYAMIKALSPTYFDPLWDSGYGTAVVSVLLVVMAIGNVILYKM 312 Query: 183 INFD 186 +NF+ Sbjct: 313 VNFE 316 >gi|163745842|ref|ZP_02153201.1| type II secretion system protein, putative [Oceanibulbus indolifex HEL-45] gi|161380587|gb|EDQ04997.1| type II secretion system protein, putative [Oceanibulbus indolifex HEL-45] Length = 320 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 103/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H KR + + P+A++++VRS+R G P S+A++++ + DP+ SEF + + Sbjct: 134 VSHKAGKRMSMIEEQLPDAVELMVRSLRVGHPFSNAISIVSKEIQDPLASEFGVIADEAA 193 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+ Sbjct: 194 YGRDLGEALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFRLFRRVK 253 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EAK S + P ++ P Y + + + P + F+++ + VMR Sbjct: 254 AITAEAKWSGKFLSGFPLAALVVINLGDPHYYDEVRDHPYFIPACFIVGMFLVLNLFVMR 313 Query: 181 LMINFDV 187 ++ N V Sbjct: 314 ILTNIKV 320 >gi|254510017|ref|ZP_05122084.1| type II/IV secretion system protein, TadC subfamily [Rhodobacteraceae bacterium KLH11] gi|221533728|gb|EEE36716.1| type II/IV secretion system protein, TadC subfamily [Rhodobacteraceae bacterium KLH11] Length = 322 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 99/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KKR A + P+A++++VRS+R G P ++ ++ + DP+ +EF + + Sbjct: 136 VNNKAKKRMALIEEQLPDAVELMVRSLRVGNPFVSSIQIVANEIEDPLATEFGIISDESA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + +Q++ F + +S+Q Q GGNL++ LA L++++R R + +V Sbjct: 196 YGRDVGEALKDMAERLDMQDLRFLAVAVSIQQQSGGNLADILAGLAKVIRARFRLFRRVN 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EAK S + P + P Y + ++++P + + ++VMR Sbjct: 256 AITAEAKWSGKFLSGFPVACLVFILVNDPNYYDTVLDEPYFIPACFFVGFMLTLNLIVMR 315 Query: 181 LMINFDV 187 ++ N V Sbjct: 316 ILTNIKV 322 >gi|78486065|ref|YP_391990.1| type II secretion system protein [Thiomicrospira crunogena XCL-2] gi|78364351|gb|ABB42316.1| Flp (type IV) pilus assembly protein, TadC homolog [Thiomicrospira crunogena XCL-2] Length = 315 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 94/184 (51%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 K+R + FP LD IVR++++G + A+++I + P+ E + V LG Sbjct: 131 FKKKQRQNRLRQQFPEMLDAIVRALQSGYGIDGALSMIAEEFRAPLGKEVKEVNRQLTLG 190 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +S+ + + + + E FF + +Q + GG L+ L LSR++R R+ +AK++ L Sbjct: 191 ISMRDILRDFQTRIEIPEAQFFVVTLIIQRETGGQLAPILEELSRLMRRREMFQAKLKTL 250 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E++ +A +G P YF P M +NDP G +L ++ M+ G ++++ M Sbjct: 251 TAESRFTAIFLGLAPLGYLGYKYFFDPDSMAFFLNDPTGQDILIISLVLMISGAIILKSM 310 Query: 183 INFD 186 + Sbjct: 311 LRIK 314 >gi|126737250|ref|ZP_01752985.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. SK209-2-6] gi|126721835|gb|EBA18538.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. SK209-2-6] Length = 322 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 97/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + R AK + P+A++++VRS+R G P + V ++ + DP+ +EF + + Sbjct: 136 VNKKAATRMAKIEEQLPDAVELMVRSLRVGHPFTSTVQIVSDEIEDPLATEFGIIADESA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + +Q++ F S +++Q Q GGNL+E LA L+ ++R R + KV+ Sbjct: 196 YGRDIGEALKEMAERLNIQDLRFLSVAVTIQQQSGGNLAEVLAGLAGVIRARFRLFRKVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EAK S + + P + P Y + +++ P + + ++VMR Sbjct: 256 AITAEAKWSGKFLSAFPLLALIAILVKDPNYYDSVMDHPYFIPACFAVGIMLAVNLLVMR 315 Query: 181 LMINFDV 187 ++ + V Sbjct: 316 ILTDIKV 322 >gi|148655424|ref|YP_001275629.1| type II secretion system protein [Roseiflexus sp. RS-1] gi|148567534|gb|ABQ89679.1| type II secretion system protein [Roseiflexus sp. RS-1] Length = 327 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 41/191 (21%), Positives = 100/191 (52%), Gaps = 4/191 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + K+R KF + ++++ S+R+G + ++ ++ ++ +P SE+RRV++ Sbjct: 137 VGYAAKQRVTKFNAQLGDTINMLANSLRSGYSLLQSMELVSREAPEPTASEYRRVVQEVG 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGL +++ +++ +P +++ T + +Q + GGNL++ L + +R+R +K ++ Sbjct: 197 LGLRTEDALDNLLKRVPSEDLDLLITAVKIQMESGGNLAQILDTIGHTIRERIRIKGEIA 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHMLL--GVAAAFMLIGI 176 L+ + + SA++I LP ++ + +P YM + P H ++IG Sbjct: 257 VLTAQGRISAYVITGLPIGLAIFITVINPNYMAPMFSFGMPPEHWCCLPVAGIVMIVIGF 316 Query: 177 MVMRLMINFDV 187 + +++ +V Sbjct: 317 FAIMKIVDIEV 327 >gi|302542848|ref|ZP_07295190.1| putative integral membrane protein [Streptomyces hygroscopicus ATCC 53653] gi|302460466|gb|EFL23559.1| putative integral membrane protein [Streptomyces himastatinicus ATCC 53653] Length = 312 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 87/187 (46%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR +F++ P I+ + +AGL + A+++ + P E +V Sbjct: 126 LNWQRQKRIERFINQLPELSRILANATQAGLALRTALSMAADEMEAPAGEELSKVSAKLA 185 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S+ +++ + +P +E+ T + + ++ GG + +L NL+ L +RK + +V+ Sbjct: 186 VGHSVDDALGELAERLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTHTLEERKETRREVR 245 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +A+++ + L+ SPG ++ + G + A A IG ++R Sbjct: 246 TQLSQVTVTAYVVPLMGIGTLLLMNRISPGSLDRMTASIWGQAAVIAAFALYGIGFFLIR 305 Query: 181 LMINFDV 187 M DV Sbjct: 306 RMSKIDV 312 >gi|84516637|ref|ZP_01003996.1| putative Flp pilus assembly protein TadB [Loktanella vestfoldensis SKA53] gi|84509673|gb|EAQ06131.1| putative Flp pilus assembly protein TadB [Loktanella vestfoldensis SKA53] Length = 320 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 97/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R + P+A+D++VRS+R G P S A+ + + DP+ +E + + Sbjct: 134 ISRKATQRINLISEQLPDAVDLMVRSLRVGHPFSSAINIAAKEVPDPLGTEIGIIADETA 193 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + Q++ F + +++Q GGNL+E L LS+++R R + +V+ Sbjct: 194 YGRDMGETLKAMAERLDNQDLRFLAVAVTIQQSSGGNLAEILDGLSKVIRARFRLFRRVK 253 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EAK S ++ + P + P Y + ++ P V AAF+++ ++VMR Sbjct: 254 AITAEAKWSGNLLSAFPILALIGINLVQPNYFDDVMESPMFIPACFVVAAFLVLNLIVMR 313 Query: 181 LMINFDV 187 + N V Sbjct: 314 ALTNIKV 320 >gi|309780756|ref|ZP_07675497.1| TadB protein [Ralstonia sp. 5_7_47FAA] gi|308920438|gb|EFP66094.1| TadB protein [Ralstonia sp. 5_7_47FAA] Length = 325 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 93/185 (50%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 H +R K P A D+I R++RAG + A+ + + P+ +E V + G Sbjct: 141 HRRTRRLLKLEAQLPEATDLISRALRAGHSLPAALEMAGTELPAPIGAELAIVFSQINFG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +S+S++ + + +P+ ++ + I +Q + GGNL+E L N+ +++R R + KV+ L Sbjct: 201 VSMSDAFAGLTDRVPVDDLRYLVIAILIQRESGGNLAEILDNVGKLIRKRLQLLDKVRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + WI+ LP + +Y +P M+ L G LL A +G++ +R + Sbjct: 261 SAEGRLGGWILTLLPPVMGLAIYLLNPELMSTLWTTDAGIRLLWFAITMTCLGMLWIRQI 320 Query: 183 INFDV 187 + + Sbjct: 321 VRIHI 325 >gi|260463898|ref|ZP_05812094.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] gi|259030273|gb|EEW31553.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] Length = 321 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 53/185 (28%), Positives = 106/185 (57%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + + K+R +F P AL++I R ++AG PV A+A++ + DP+ +EF + + Sbjct: 136 RFMRKRRLKRFGMQLPEALELITRGLKAGHPVPVAIAMVSREMPDPIGTEFGVIADEVTY 195 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L +++ + + +++ F T +S+QS GGNL E L L+ +R+R ++ KV+A Sbjct: 196 GSDLVSALNSLFDRVGHEDLPLFMTAVSIQSSSGGNLREILDGLALTIRERGKLRRKVRA 255 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 +S E + SA+I+ ++P + + PG+ + ++P+ L+G + ++++G ++M Sbjct: 256 ISTEGRLSAYILTAIPALLFAGIMAMMPGFYRDVWDEPKTWYLIGGSVTWLMLGNLMMFK 315 Query: 182 MINFD 186 M NF Sbjct: 316 MSNFR 320 >gi|241662161|ref|YP_002980521.1| type II secretion system protein [Ralstonia pickettii 12D] gi|240864188|gb|ACS61849.1| type II secretion system protein [Ralstonia pickettii 12D] Length = 325 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 93/185 (50%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 H +R K P A D+I R++RAG + A+ + + P+ +E V + G Sbjct: 141 HRRTRRLLKLEAQLPEATDLISRALRAGHSLPAALEMAGTELPAPIGAELAIVFSQINFG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +S+S++ + + +P+ ++ + I +Q + GGNL+E L N+ +++R R + KV+ L Sbjct: 201 VSMSDAFAGLTDRVPVDDLRYLVIAILIQRESGGNLAEILDNVGKLIRKRLQLLDKVRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + WI+ LP + +Y +P M+ L G LL A +G++ +R + Sbjct: 261 SAEGRLGGWILTLLPPVMGLAIYLLNPELMSTLWTTDAGIRLLWFAITMTCLGMLWIRQI 320 Query: 183 INFDV 187 + + Sbjct: 321 VRIHI 325 >gi|296131924|ref|YP_003639171.1| Type II secretion system F domain protein [Thermincola sp. JR] gi|296030502|gb|ADG81270.1| Type II secretion system F domain protein [Thermincola potens JR] Length = 313 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 86/187 (45%), Gaps = 1/187 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K +K P+ ++ SV+AGL + + ++ + P ++ F + Sbjct: 128 LKVKQQKLVDALNRQLPDICRLLSSSVKAGLNIQQGIELVAREQKPPAQTVFTELAHQLQ 187 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG +L + S ++ +P +E+ + I VQ + GGN++ L +S+ L +R + +++ Sbjct: 188 LGNTLENAFSHIMEELPSKELRLMGSTIIVQRKAGGNMARVLEEMSQTLENRDRVNQELK 247 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + E K A I+ +P ++ + PG+ L P G +L + +G +++ Sbjct: 248 GKTAETKFVAMILPFMPIVAGLVLNISFPGFFRPLF-TPLGLILAALVIGIETVGFILIA 306 Query: 181 LMINFDV 187 + + V Sbjct: 307 KITDIRV 313 >gi|294012436|ref|YP_003545896.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S] gi|292675766|dbj|BAI97284.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S] Length = 332 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 69/195 (35%), Positives = 112/195 (57%), Gaps = 8/195 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + LIK R KF FP+AL+++ R +R+GLP+++ + V+ + PV EF+ + E Sbjct: 138 VSRLIKGRVLKFNAKFPDALELLTRGLRSGLPIAETLNVVSNEVPGPVGEEFKLITERIK 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G ++ +++ + E FF +++Q + GGNL+E L+NL+ +LR R MK K++ Sbjct: 198 IGKTMDQALQETADRLGTPEFQFFVISLAIQRETGGNLAETLSNLATVLRQRAQMKLKIR 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRGHMLL-------GVAAAFM 172 A+S E+KASA+IIG LPF V L+ + + YM+ DP G L +M Sbjct: 258 AMSSESKASAYIIGVLPFTVFGLICYINYDYMSPFFTPDPAGLFGLSTMQVIGIGGMCWM 317 Query: 173 LIGIMVMRLMINFDV 187 IG +M MINF++ Sbjct: 318 SIGAFIMAQMINFEI 332 >gi|163733538|ref|ZP_02140981.1| type II secretion system protein, putative [Roseobacter litoralis Och 149] gi|161393326|gb|EDQ17652.1| type II secretion system protein, putative [Roseobacter litoralis Och 149] Length = 320 Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 97/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR A + P+A++++VRS+R G P S AV ++ + DP+ SE + + Sbjct: 134 VSSKANKRLAMIEEQLPDAVELMVRSLRVGHPFSSAVQIVSKEVQDPLASEMGVIADESA 193 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + +++ M + +Q++ F + +++Q GGNL+E LA L++++R R + +V+ Sbjct: 194 YGRDVGDALKEMAERLDMQDLRFLAVAVNIQQTSGGNLAEILAGLAKVIRARFRLFRRVK 253 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EAK S + + P ++ P Y + + + + F+ + + VMR Sbjct: 254 AITAEAKWSGKFLSAFPVVALIVINVGDPNYYDAVRDHAYFIPACFLVGVFLALNLFVMR 313 Query: 181 LMINFDV 187 ++ + V Sbjct: 314 ILTDIKV 320 >gi|319943384|ref|ZP_08017666.1| type II secretion system protein F domain protein [Lautropia mirabilis ATCC 51599] gi|319743199|gb|EFV95604.1| type II secretion system protein F domain protein [Lautropia mirabilis ATCC 51599] Length = 291 Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 45/187 (24%), Positives = 98/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++HL +R F P+A+ +I +VRAG ++ A+ + + P EF ++ Sbjct: 105 IRHLGAQRRKLFARQLPDAMMLIAGAVRAGASMTLALRQMASELPAPGGQEFELMLRELR 164 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG++L +++ + R M ++ F + + ++ GGNL+E L L+ +R + ++ K+ Sbjct: 165 LGVTLDDALLNLERRMGCDDLRLFGAAVRIANESGGNLAETLERLADTIRKKMALEDKIM 224 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + + W++ LP V ++ P M L++ +G ++ V A ++G++ +R Sbjct: 225 ALTAQGRMQGWVMVLLPLGVGAALFAIEPTAMAPLLHSWQGWIVCSVVAVLEIVGLLFIR 284 Query: 181 LMINFDV 187 ++ D+ Sbjct: 285 RIMAIDI 291 >gi|239979682|ref|ZP_04702206.1| hypothetical protein SalbJ_09607 [Streptomyces albus J1074] gi|291451547|ref|ZP_06590937.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291354496|gb|EFE81398.1| conserved hypothetical protein [Streptomyces albus J1074] Length = 311 Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 88/187 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR F++ P+ ++ + AGL + A+A+ + P E RV + Sbjct: 125 LNWQRQKRIEAFINQLPDVARLLANATAAGLALRTALAMAAEELEAPAGEELCRVADQLA 184 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S+ ++ + +P +E+ T + + +Q GG + +L NL+ L +RK + +V+ Sbjct: 185 LGRSVDAALGELAERLPSRELVVLVTTLVLSNQAGGTVVSSLRNLTATLEERKETRREVR 244 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + E A+A + +L L+ + G + + G +L+ +A +G +V+R Sbjct: 245 TMLSEVHATALTVPALGLGSLLLINSQNEGALARVTGSALGQILILIALGLYAVGFLVIR 304 Query: 181 LMINFDV 187 + +V Sbjct: 305 RLGKIEV 311 >gi|85859133|ref|YP_461335.1| flp pilus assembly protein [Syntrophus aciditrophicus SB] gi|85722224|gb|ABC77167.1| flp pilus assembly protein [Syntrophus aciditrophicus SB] Length = 327 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 54/186 (29%), Positives = 100/186 (53%), Gaps = 1/186 (0%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 R KF P+ALD++ R+++AG + ++ + DP+ EF +V+E + G Sbjct: 142 MKKNSRMKKFDAQLPDALDLMARALKAGHAFPGGIQMVAKEFDDPIGIEFAKVVEETNFG 201 Query: 63 LSLSESISRMVRYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + + E++ + ++ FF+ + +Q + GGNL+E L +++RI+R+R + ++ Sbjct: 202 VGVEEALRNLANRFDSSSDLKFFAIAVMIQRESGGNLAEILESIARIIRERFKLMGTIRT 261 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 LS E + SA I+ ++PF V+ + +P Y+ VL DP G L + M +GI +M+ Sbjct: 262 LSAEGRLSAIILVAIPFFVAFALSIMNPQYITVLATDPIGKALAFTSLVMMAVGIYIMKK 321 Query: 182 MINFDV 187 I V Sbjct: 322 TIQIKV 327 >gi|108759913|ref|YP_632817.1| type II secretion system protein F domain [Myxococcus xanthus DK 1622] gi|108463793|gb|ABF88978.1| type II secretion system protein F domain protein [Myxococcus xanthus DK 1622] Length = 281 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 100/187 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +KH K+R KF +AL + + +AGL A+ + ++ P+ EF ++ Sbjct: 95 VKHYRKRRIKKFNVQLVDALQAMANAFKAGLTFPQAIEHVAREAMPPLSQEFGLFVKEVK 154 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L E++ M R + ++ ++ QLGGN++E +S ++R+R ++ K+ Sbjct: 155 LGVPLEEALINMGRRVGSDDLELVVVSTNIARQLGGNMAEMFETISTVIRERFRLEGKID 214 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + K WI+ ++P + ++ + P M +++ G +L+ + A ++GI+++R Sbjct: 215 ALTSQGKLQGWIVAAMPGVLGMVLNYMRPDLMEPMMDHIFGWILVIIIAIMEVMGILIIR 274 Query: 181 LMINFDV 187 ++N D+ Sbjct: 275 RIVNIDI 281 >gi|327189774|gb|EGE56918.1| putative tadB pilus assembly protein [Rhizobium etli CNPAF512] Length = 317 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 56/184 (30%), Positives = 103/184 (55%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R F P ALD+ RS+ AG P+ A+A++ + DP+ +EF + + G Sbjct: 133 RARARRMKAFELKLPEALDVATRSLAAGHPLPAAIALVGREMPDPIGTEFGLLTDELTYG 192 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++L +++ + + +++++ + +SVQ+ GGNL E L NLS+ LRDR ++AKV+A+ Sbjct: 193 VTLDDALVNLADRVGVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRDRTMLRAKVRAI 252 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + +A + PF + ++ SP Y + + + G L+ A M IG +++ M Sbjct: 253 SSEGRITAIFMSIYPFLLYAMIRALSPTYFDPVWDSGHGTTLVCALLAVMAIGNVILYKM 312 Query: 183 INFD 186 +NF+ Sbjct: 313 VNFE 316 >gi|51245381|ref|YP_065265.1| TadB [Desulfotalea psychrophila LSv54] gi|50876418|emb|CAG36258.1| related to TadB [Desulfotalea psychrophila LSv54] Length = 317 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 55/184 (29%), Positives = 100/184 (54%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++R F + FP+ALD++ +++AG + ++ ++ + P+ EF V+E + G Sbjct: 134 KRRQRRINFEEHFPDALDLMGYAMKAGHSIMASLKMVSEEMPAPINEEFAIVVEEINFGK 193 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S+ ++ + + E+ +F T + VQ + GGNL E L +S I+R + + +V+ALS Sbjct: 194 SIDSTLRNFAKRVDSTELRYFVTSVIVQRETGGNLVEILEKISAIIRKKFRFRERVRALS 253 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E K SA I+ +LPFC++ V + Y+ +LI DP G L+ A M G ++ + Sbjct: 254 AEGKLSAIILVALPFCIALAVSVLNKEYVAILITDPIGPYLITGAVIMMSFGSFIIYKFV 313 Query: 184 NFDV 187 D+ Sbjct: 314 QLDM 317 >gi|254487450|ref|ZP_05100655.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. GAI101] gi|214044319|gb|EEB84957.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. GAI101] Length = 320 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 99/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR + + P+A++++VRS+R G P ++A+A++ + DP+ SEF + + Sbjct: 134 ISSKAKKRMSMIEEQLPDAVELMVRSLRVGHPFTNAIAIVSKEIQDPLASEFGIISDEAA 193 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V Sbjct: 194 YGRDIGEALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFKLFRRVN 253 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EAK S + + P ++ P Y + ++ F+ ++VMR Sbjct: 254 AITAEAKWSGKFLSAFPIVALIVIKLGDPHYYDEVMTHELFIPGCIAVILFLSANLLVMR 313 Query: 181 LMINFDV 187 + + V Sbjct: 314 KLTDIKV 320 >gi|218663020|ref|ZP_03518950.1| putative tadB pilus assembly protein [Rhizobium etli IE4771] Length = 317 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 54/184 (29%), Positives = 103/184 (55%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R KF P ALD+ RS+ AG P+ A++++ + DP+ +EF + + G Sbjct: 133 RARARRMKKFELKLPEALDVANRSLAAGHPLPAAISLVGREMPDPIGTEFGLLSDELTYG 192 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++L +++ + + ++++ + +SVQ+ GGNL E L NLS+ LRDR ++AKV+A+ Sbjct: 193 VTLDDALVNLADRVGVEDLDLLAISLSVQAGTGGNLVEILQNLSKTLRDRTMLRAKVRAI 252 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + +A + PF + ++ SP Y + + + G ++ A M +G +++ M Sbjct: 253 SSEGRITAIFMSVYPFLLYAMIKALSPTYFDPVWDSGHGTTVVCALLAVMAVGNVILYKM 312 Query: 183 INFD 186 +NF+ Sbjct: 313 VNFE 316 >gi|283769335|ref|ZP_06342234.1| type II secretion system F domain protein [Bulleidia extructa W1219] gi|283103992|gb|EFC05376.1| type II secretion system F domain protein [Bulleidia extructa W1219] Length = 294 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 49/183 (26%), Positives = 93/183 (50%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 KKR A F P AL II +R+G A+A + +P+ E +RVI + G Sbjct: 111 AKKKRLALFNKQLPEALVIIGNCLRSGFTFRHALARVSEDLPNPISEELKRVIREVNYGR 170 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L ES+ + E+ ++ +++Q + GGNL+E + ++ + DR N++ +++ L+ Sbjct: 171 KLEESLGELASRTNSAELEMINSAVTIQQRSGGNLAEIVEKVTETINDRINIRNQIRVLT 230 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + S +IG LP + ++ + SP YMN G ++L V+ G ++++ ++ Sbjct: 231 TQGRYSGMLIGLLPVFLLIILTWISPNYMNSFFKTSIGKVMLVVSVILETTGFLLIQKIV 290 Query: 184 NFD 186 N Sbjct: 291 NIK 293 >gi|149915638|ref|ZP_01904164.1| type II secretion system protein, putative [Roseobacter sp. AzwK-3b] gi|149810530|gb|EDM70373.1| type II secretion system protein, putative [Roseobacter sp. AzwK-3b] Length = 322 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 98/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR A + P+A++++VRS+R G P + A++++ + +DP+ +EF + + Sbjct: 136 ITIKANKRMAMLEEQLPDAIELMVRSLRVGHPFTSAISIVASEMADPLATEFGIIADEAA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + +Q++ F + +++Q Q GGNL+E L L++++R R + +V+ Sbjct: 196 YGRDIGEALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILDGLAKVIRARFRLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EAK S + P + P Y + + P + F++ + VMR Sbjct: 256 AITAEAKWSGKFLSGFPVLALIGIQIIDPNYYDKAMLHPYFIPACLIVGTFLVANLFVMR 315 Query: 181 LMINFDV 187 ++N V Sbjct: 316 ALVNIKV 322 >gi|86159246|ref|YP_466031.1| type II secretion system protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85775757|gb|ABC82594.1| type II secretion system protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 320 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 61/184 (33%), Positives = 102/184 (55%), Gaps = 1/184 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 KR+AK + P ALD++ RS+RAG V+ A V+ + +P+ EF R E Q LGL Sbjct: 136 ARAKRSAKLSEQLPEALDMMARSLRAGHAVTSAFQVVASEMPEPICVEFARAYEEQRLGL 195 Query: 64 SLSESISRMVRYMP-LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +L ++ +M P ++ F+ +Q + GGNL+E L + +R R K++AL Sbjct: 196 TLERAVVQMSERCPGNGDMKIFAVSAVIQRETGGNLAEILDQIGETIRQRYRFYGKLRAL 255 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E +ASA I+G+LPF V+ + +P Y+ VL RG M++ A+ ++G++ + + Sbjct: 256 TGEGRASAVILGALPFAVAVALSILNPEYLMVLPGTARGQMIILGASVSWVVGLLWLYRL 315 Query: 183 INFD 186 D Sbjct: 316 TQVD 319 >gi|319951072|ref|ZP_08024925.1| type II secretion system integral membrane subunit [Dietzia cinnamea P4] gi|319435232|gb|EFV90499.1| type II secretion system integral membrane subunit [Dietzia cinnamea P4] Length = 314 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 45/173 (26%), Positives = 92/173 (53%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D ++L ++ S+RAG + A+A + ++ P EF R+I +G L+ ++ Sbjct: 141 DQLDDSLQLMASSLRAGHSLLQALASVAREAEQPTSEEFARIINETRVGRELAPALEETA 200 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 M Q+ + + I++ ++GGNL+E L + +R+R ++ +VQAL+ E K SA+++ Sbjct: 201 NRMGSQDFVWVTQAIAINREVGGNLAEVLDGVGHTIRERNQIRRQVQALAAEGKLSAYVL 260 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +LPF + ++ ++P Y+ VL P G ++ + IG + + ++ Sbjct: 261 MALPFGIGGFLFVSNPSYIGVLTQSPLGWGMIAAGVVMLTIGGIWLSKVVRIR 313 >gi|323341959|ref|ZP_08082192.1| flp pilus assembly protein [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464384|gb|EFY09577.1| flp pilus assembly protein [Erysipelothrix rhusiopathiae ATCC 19414] Length = 311 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 57/187 (30%), Positives = 102/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K K+R KF +AL I+ S+RAG A+A I DP+ EF +V Sbjct: 125 IKIKRKQRIGKFSQQLGDALLILSNSLRAGFTFEQALASIAKDLPDPIGPEFLKVCREVE 184 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG ++ +S++ + M +E+ +T +S+Q Q+GGNL++ L N+ +R+R ++ ++ Sbjct: 185 LGENIEKSLAAVSTRMESEEMKLMNTAVSIQRQVGGNLADVLDNIGEAIRERITIQKNIK 244 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + SA +I LP V L+ + YM + P G+ LLGV+A ++G +++ Sbjct: 245 ALTAQGDVSAKVIAGLPVVVLVLISMVNKEYMEPVFTTPFGYALLGVSATLEIMGYAMIK 304 Query: 181 LMINFDV 187 + N ++ Sbjct: 305 KITNIEM 311 >gi|309792340|ref|ZP_07686810.1| type II secretion system protein [Oscillochloris trichoides DG6] gi|308225655|gb|EFO79413.1| type II secretion system protein [Oscillochloris trichoides DG6] Length = 325 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 45/191 (23%), Positives = 98/191 (51%), Gaps = 4/191 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR F D + + ++ ++R G + ++ + P+ EFRRV++ Sbjct: 135 LNMRAKKRIKSFNDQLGDTITMMANALRGGFSFLQTLDMVARDAPAPMSGEFRRVVQEVG 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + E++ ++R MP +++ T +++Q ++GGNL++ L + +R+R +K ++Q Sbjct: 195 LGRTTEEALQSLLRRMPSEDLDLLITAVNIQMEVGGNLAQILDTIGHTIRERVRIKGEIQ 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLL-GVAAAFMLIGI 176 L+ + + S W+I LP ++ + +P YM + + P+ L + A + IG Sbjct: 255 TLTAQGRISGWVITGLPIGLAIFITMINPEYMMPIFSFGMPPKHWCCLPVTSLAMIAIGY 314 Query: 177 MVMRLMINFDV 187 + +++ +V Sbjct: 315 FAIMKIMDIEV 325 >gi|147677787|ref|YP_001212002.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum SI] gi|146273884|dbj|BAF59633.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum SI] Length = 323 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 96/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ KR KF +AL I+ S+R+G A+ ++ + P+ EF ++ + Sbjct: 137 LRLAKTKRLVKFNGQIGDALIIMANSLRSGFSFLQAMDMVRKEMPGPIAKEFGAALQEMN 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G E++ MV + +++ T + +Q Q+GGNL+E L ++ +R+R +K +++ Sbjct: 197 WGTPTEEALLNMVSRVNSEDLELVVTAVLIQRQVGGNLAEVLDKIAFTIRERVRIKREIK 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + + S IIG LP +S ++ + YM VL G ++ A F ++G+ +++ Sbjct: 257 TLTAQGRISGLIIGLLPIFLSIAIFLLNHAYMKVLFTSKAGLTMVSCAVLFQVLGLALIK 316 Query: 181 LMINFDV 187 +I V Sbjct: 317 KIIKIPV 323 >gi|260574612|ref|ZP_05842615.1| type II secretion system protein [Rhodobacter sp. SW2] gi|259023029|gb|EEW26322.1| type II secretion system protein [Rhodobacter sp. SW2] Length = 322 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 100/187 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR A + P+A++++VRS+R G P + A+A++ + +DP+ +EF + + Sbjct: 136 VNGKAKKRIALMEEQLPDAVELMVRSLRVGHPFASAIAIVSKEVADPLGTEFGIIGDEAA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++ES+ M Q++ F S +++Q Q GGNL+E L L++++R R + +V+ Sbjct: 196 YGRDVTESLKAFAERMDNQDLRFLSVAVTIQQQSGGNLAEILEGLAKVIRARFKLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EAK S + + P ++ P Y + + V F+ I ++ M+ Sbjct: 256 AITAEAKWSGMFLSAFPIGALVMILMLKPDYFDKVKETSAFVPAALVVGVFLTINVIFMK 315 Query: 181 LMINFDV 187 +M+N V Sbjct: 316 MMVNIKV 322 >gi|110679392|ref|YP_682399.1| type II secretion system protein, putative [Roseobacter denitrificans OCh 114] gi|109455508|gb|ABG31713.1| type II secretion system protein, putative [Roseobacter denitrificans OCh 114] Length = 320 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 97/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR A + P+A++++VRS+R G P S AV ++ + DP+ SE + + Sbjct: 134 VSSKANKRLAMIEEQLPDAVELMVRSLRVGHPFSSAVQIVSKEVQDPLASEMGVIADESA 193 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + +++ M + +Q++ F + +++Q GGNL+E LA L++++R R + +V+ Sbjct: 194 YGRDVGDALKEMAERLDMQDLRFLAVAVNIQQTSGGNLAEILAGLAKVIRARFRLFRRVK 253 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EAK S + + P ++ P Y + + + + F+ + + VMR Sbjct: 254 AITAEAKWSGKFLSAFPVVALIVINVGDPNYYDAVRDHAYFIPACFLVGIFLALNLFVMR 313 Query: 181 LMINFDV 187 ++ + V Sbjct: 314 VLTDIKV 320 >gi|302558696|ref|ZP_07311038.1| integral membrane protein [Streptomyces griseoflavus Tu4000] gi|302476314|gb|EFL39407.1| integral membrane protein [Streptomyces griseoflavus Tu4000] Length = 314 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 85/187 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR +F++ P I+ + +AGL + AV + + P E +V Sbjct: 128 LNWQRQKRIERFINQLPELARILANATQAGLALRTAVGMAAEEMEAPAGEELAKVANQLA 187 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S+ +++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ Sbjct: 188 VGASMDDALGELADRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVR 247 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +++ + L L+ G ++ + P G + +A +G +++R Sbjct: 248 TQLSQVSMTSYAVPVLGVGSLFLMNGVKDGALDRMTGSPAGQAAVIIAFGLYAVGFVLIR 307 Query: 181 LMINFDV 187 + DV Sbjct: 308 RLSRIDV 314 >gi|300704934|ref|YP_003746537.1| tad secretion system, pilus assembly protein [Ralstonia solanacearum CFBP2957] gi|299072598|emb|CBJ43948.1| Tad secretion system, pilus assembly protein [Ralstonia solanacearum CFBP2957] Length = 325 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 94/175 (53%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 P A D+I R++RAG + A+ + + PV E V + G+S++++++ + Sbjct: 151 EAQLPEATDLISRALRAGHSLPSALEMAGDELPQPVGPELAIVFGQINYGVSMNDALAGL 210 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + +P+ ++ + I +Q + GGNL+E L N+ ++R R + KV+ LS E + WI Sbjct: 211 IDRVPVDDLRYLVIAILIQRESGGNLAEILDNVGTLIRKRLQLLDKVRVLSAEGRLGGWI 270 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + +LP ++ +VY +P M+ L DP G ++ A A G++ +R ++ + Sbjct: 271 LTALPPAMAVVVYQLNPELMSTLWKDPVGIHMMWYAIAMTCFGVLWIRHIVRIHI 325 >gi|126733577|ref|ZP_01749324.1| Putative Flp pilus assembly protein TadB [Roseobacter sp. CCS2] gi|126716443|gb|EBA13307.1| Putative Flp pilus assembly protein TadB [Roseobacter sp. CCS2] Length = 321 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 99/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR + P A++++VRS+R G P S A+A++ + DP+ +E + + Sbjct: 135 VNGKAKKRMNMLAEQLPEAVELMVRSLRVGHPFSSAIAIVAREVPDPLGTEIGMISDEAA 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + Q++ F + +++Q GGNL+E L L++++R R + +V Sbjct: 195 YGRDMGETLKSMAERLDNQDMRFLAVAVTIQQTSGGNLAEILDGLAKVIRARFRLFRRVA 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EAK S ++ + P + P Y + ++ P + + AF+++ ++VMR Sbjct: 255 AITAEAKWSGNLLSAFPIFALMGINLVKPDYYDDVMESPLFIPAVLIVVAFLVVNLLVMR 314 Query: 181 LMINFDV 187 +++ V Sbjct: 315 ALVDIKV 321 >gi|297157607|gb|ADI07319.1| putative integral membrane protein [Streptomyces bingchenggensis BCW-1] Length = 312 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 88/187 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR KF+ P I+ + +AGL + A+ + + P E +V + Sbjct: 126 LNWQRQKRIEKFISQLPELSRILANATQAGLALRTALGMAADEMEAPAGEELAKVADKLA 185 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S+ +++ + +P +E+ T + + ++ GG + +L NL++ L +RK + +V+ Sbjct: 186 VGHSIDDALGELAERLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTQTLEERKETRREVR 245 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +A+++ + L+ + G ++ + + G + VA A +G ++R Sbjct: 246 TQLSQVTVTAYVVPLMGIGTLLLMNRIATGSLDRMTSSFWGQAAVVVAFALYGVGFFLIR 305 Query: 181 LMINFDV 187 M DV Sbjct: 306 RMSKIDV 312 >gi|114797844|ref|YP_759873.1| putative Flp pilus assembly protein TadB [Hyphomonas neptunium ATCC 15444] gi|114738018|gb|ABI76143.1| putative Flp pilus assembly protein TadB [Hyphomonas neptunium ATCC 15444] Length = 316 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 62/187 (33%), Positives = 103/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++HL R K P+AL I+ RS+ AG PV+ AV+++ + DP+ +EF + Sbjct: 130 IRHLAGARAKKLAAQLPDALQIVCRSLEAGHPVATAVSLVAREMPDPIGTEFGMTADEVS 189 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+SL+ ++ RM +V F+ + +Q + GGNL+E L + + +R+R+ M+ KV+ Sbjct: 190 YGMSLTNAVQRMAERAGDPDVELFAATVRLQEKTGGNLTELLKSNTNTIRERQTMRLKVR 249 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A S E + SA I+ S PF V T ++ P + +I++P +M IG +VM Sbjct: 250 AASSEGRVSAMILTSAPFIVMTAIHLLRPEFYGSVIHEPLIQYSFAGLLVWMGIGNLVMN 309 Query: 181 LMINFDV 187 MINF + Sbjct: 310 RMINFKM 316 >gi|290957845|ref|YP_003489027.1| type II secretion system F protein [Streptomyces scabiei 87.22] gi|260647371|emb|CBG70476.1| putative type II secretion system F protein [Streptomyces scabiei 87.22] Length = 341 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 91/187 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR F++ P+ ++ + AGL + A+A+ + P E RV + Sbjct: 155 LNWQRQKRIEAFINQLPDVARLLANATAAGLALRTALAMAAEELEAPAGEELARVADQLA 214 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S+ +++ + +P +E+ T + + ++ GG + +L NL++ L DRK + +V+ Sbjct: 215 LGRSVDDALGELAERLPSRELIVLVTTLVLSNKAGGTVVSSLRNLTQTLEDRKETRREVR 274 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + E A+A+ + L L+ ++ G + + P G +L+ ++ +G V+R Sbjct: 275 TMLSEVNATAFTVPLLGLGSLLLINSSNDGALARVTGSPLGQLLVLISIGLYTVGFFVIR 334 Query: 181 LMINFDV 187 + +V Sbjct: 335 RLGKIEV 341 >gi|254420696|ref|ZP_05034420.1| Bacterial type II secretion system protein F domain [Brevundimonas sp. BAL3] gi|196186873|gb|EDX81849.1| Bacterial type II secretion system protein F domain [Brevundimonas sp. BAL3] Length = 326 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 88/187 (47%), Positives = 127/187 (67%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K R KF +FPNA+D+IVR +++GLPV + +I +S P+ F++++E Sbjct: 140 VGFLAKARMKKFSLEFPNAVDVIVRGIKSGLPVHECFKIIARESPAPLGPAFKKLVEALG 199 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G++L +++ +M MP E+ FF+ VI++Q + GGNL+EAL+NLS +LR R+ M+ KV+ Sbjct: 200 VGMTLEQALDKMFEQMPTPELRFFTIVIAIQQKTGGNLAEALSNLSTVLRARRMMREKVK 259 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EA ASA II SLP V T+V FTSPGYM L D RG+ LL +A A M GI VM+ Sbjct: 260 ALSSEALASAGIIASLPPAVMTMVMFTSPGYMMALFTDIRGNALLLLAGALMGTGIFVMK 319 Query: 181 LMINFDV 187 MI+F + Sbjct: 320 RMISFKI 326 >gi|87308907|ref|ZP_01091045.1| putative membrane protein [Blastopirellula marina DSM 3645] gi|87288250|gb|EAQ80146.1| putative membrane protein [Blastopirellula marina DSM 3645] Length = 310 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 54/182 (29%), Positives = 90/182 (49%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + +R F D FP+AL++I R+VRAG A+ ++ S DP+ EFRR + +G Sbjct: 126 WIKNRRLRAFQDQFPSALELIARAVRAGESFEQAIQLVGESSEDPIGVEFRRCAKQLDVG 185 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS +++ M + L +V F+T ISV + GG L E L L+ ++RDR +++++ Sbjct: 186 LSAPKAMEGMADRVELMDVKIFATTISVHRESGGALPETLDRLAAVIRDRMAYHRQLRSI 245 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + SA II L + P Y + P G LL A +G+ + + Sbjct: 246 TSSGRMSATIIALLAPLLLVFFLLFQPEYFSEFFAHPWGRYLLLFALVSEALGLYFVYRL 305 Query: 183 IN 184 + Sbjct: 306 VR 307 >gi|294102186|ref|YP_003554044.1| Type II secretion system F domain protein [Aminobacterium colombiense DSM 12261] gi|293617166|gb|ADE57320.1| Type II secretion system F domain protein [Aminobacterium colombiense DSM 12261] Length = 309 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 50/183 (27%), Positives = 103/183 (56%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + ++R +F P LD++ +RAG ++ Q P+ ++V+ L Sbjct: 124 RVRKQRRLQRFERQIPPMLDMVSSGLRAGFSFLQSLQNAGAQIEAPLGDTLQQVVAEISL 183 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GL L + ++R V + ++ T I +Q ++GGNL++ L N++R++RDR+++ A+++A Sbjct: 184 GLDLEDVLNRWVERVGSLDLELAVTSILIQREIGGNLAKILENIARVMRDRQDVAAQMKA 243 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ + + I+ LP ++ ++ SPGY++ L + +G ++LG A F IGI+V++ Sbjct: 244 LTSQGRLEGLIVSLLPVAMAVIINLLSPGYLSPLFSTQKGQVMLGTAIFFAFIGILVIQR 303 Query: 182 MIN 184 ++ Sbjct: 304 IVR 306 >gi|170725111|ref|YP_001759137.1| type II secretion system protein [Shewanella woodyi ATCC 51908] gi|169810458|gb|ACA85042.1| type II secretion system protein [Shewanella woodyi ATCC 51908] Length = 283 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 97/186 (52%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K L K+R KF+ P+AL++I S+++G VS A+ + + P++ EF+ Q L Sbjct: 98 KFLHKRRRRKFVHQLPDALNMIASSMQSGANVSTAIEFMSEEMQAPIKQEFQLFQREQRL 157 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ + ++ M + +P E + + + ++GGNL+E L LS LR + M+ K+ A Sbjct: 158 GVEFNTALDNMYKRIPEDEFQLVTAGMQISREVGGNLAEVLFRLSSTLRRKIEMEGKIDA 217 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ + K ++ LP + ++Y P M ++ +P G L+ + + G + +R Sbjct: 218 LTSQGKMQGIVMTMLPLFIGFVLYHMEPKSMGRILTEPMGWALMALIFIMLTSGYLSIRK 277 Query: 182 MINFDV 187 ++ DV Sbjct: 278 IVAIDV 283 >gi|134291850|ref|YP_001115619.1| type II secretion system protein [Burkholderia vietnamiensis G4] gi|134135039|gb|ABO59364.1| type II secretion system protein [Burkholderia vietnamiensis G4] Length = 325 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 49/182 (26%), Positives = 102/182 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R K P+ D+I R++R+G + A+ ++ + +P+ EFR + + Sbjct: 139 VTRHRRRRMLKLERQLPDVCDMIARALRSGHSFTSALGMVGEEFPEPMSGEFRITFDEIN 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+SL +++ + +P ++ +F + +Q + GGNL+E L +++ ++R+R + KV+ Sbjct: 199 YGVSLHDALVNLATRVPANDLRYFVIAVLIQRETGGNLAELLDSIAALVRERFKLFDKVR 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + SAWI+G LPF + ++ + +++VL DP G ++G M G++ +R Sbjct: 259 VLSAEGRLSAWILGLLPFGTAGMMAVLNREFLSVLWQDPAGVKMVGAMLTSMAFGLLWIR 318 Query: 181 LM 182 + Sbjct: 319 RI 320 >gi|307332438|ref|ZP_07611502.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] gi|306881907|gb|EFN13029.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] Length = 312 Score = 109 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 87/187 (46%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR +F++ P I+ + +AGL + A+ + + P E +V Sbjct: 126 LGWQRQKRIERFINQLPELSRILANATQAGLALRTALGMAADEMEAPAGEELAKVAAKLA 185 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S+ +++ + +P +E+ T + + ++ GG + +L NL++ L +RK + +V+ Sbjct: 186 VGHSIDDALEELAERLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTQTLEERKETRREVR 245 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +A+++ L L+ + G ++ + + G + VA IG ++R Sbjct: 246 TQLSQVTVTAYVVPLLGIGTLLLMNRIAAGSLDRMTSSFWGQAAVVVAFCLYGIGFFLIR 305 Query: 181 LMINFDV 187 M DV Sbjct: 306 RMSKIDV 312 >gi|167836685|ref|ZP_02463568.1| pilus assembly protein, putative [Burkholderia thailandensis MSMB43] Length = 328 Score = 109 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 64/185 (34%), Positives = 114/185 (61%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+A+D++VR+VRAG+PV A+ +S +PVRS F + + + Sbjct: 141 RMLIVRFRLRFLAVFPDAIDLMVRAVRAGIPVVHAIVTAGVESQEPVRSTFHTIGDGLRV 200 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L E + + + + + SFF+ + +Q + GG+L+E L NLS I+R R++++ K +A Sbjct: 201 GADLKEVLEQACERLQIADFSFFAVCLMLQRETGGSLTETLENLSGIIRARRDVRLKTKA 260 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E K SA II ++PF + +Y + Y+ +L + GH +L +AA + +G++++R Sbjct: 261 LTAEGKISAKIIAAVPFAIMGFLYLVNRPYIELLFDTGMGHTMLMLAAVLLTVGLLLIRK 320 Query: 182 MINFD 186 + N D Sbjct: 321 IANLD 325 >gi|87199541|ref|YP_496798.1| type II secretion system protein [Novosphingobium aromaticivorans DSM 12444] gi|87135222|gb|ABD25964.1| type II secretion system protein [Novosphingobium aromaticivorans DSM 12444] Length = 328 Score = 109 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 59/187 (31%), Positives = 107/187 (57%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR + F A+DI R++RAG PV+ A++++ + +DP+ +EF V + Sbjct: 142 LNRSAEKRRKRMEQQFAPAVDIFTRALRAGHPVASAISLLSTEMADPIGTEFGLVADEIA 201 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +L++S+ + L+++ F+ +SVQS+ GGNL+E L NL+ ++RDR ++ KV+ Sbjct: 202 YGANLNDSLVALAERWELEDLHMFAVCLSVQSETGGNLAEILGNLASVIRDRASLYQKVR 261 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E +ASAW++ LP +++ +P + + DP LIG++ +R Sbjct: 262 ALSSEGRASAWMLSVLPALTMLVLFMINPSFYLEVSGDPLFATSFAGMIGLYLIGVLWLR 321 Query: 181 LMINFDV 187 M++ V Sbjct: 322 SMVDLKV 328 >gi|119962927|ref|YP_948622.1| type II secretion system protein F [Arthrobacter aurescens TC1] gi|119949786|gb|ABM08697.1| putative bacterial type II secretion system protein F domain [Arthrobacter aurescens TC1] Length = 316 Score = 109 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 95/186 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + +R A+F + L ++ S+RAG + AV + ++ P + EF R++ Sbjct: 130 LSVMTSRRRAQFEAQLGDTLQMLSGSMRAGHSLLRAVDAVALEAQSPTKEEFARIVGEVR 189 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG L +++ + ++ + + I + ++GG+L+E L +++ +R+R +K +V+ Sbjct: 190 LGRDLRDALLDAANRLHSEDFLWATQAIEIHREVGGDLAEVLDHVAETIRERSQIKGQVR 249 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + SA+++ +LP + + + Y+ L P G ++L VA + +G + Sbjct: 250 ALSAEGRLSAYVLIALPTGMFLYLSLANGTYIQPLFTHPVGWIMLVVAVVLLALGSFWLS 309 Query: 181 LMINFD 186 ++ Sbjct: 310 RVVKIK 315 >gi|269836552|ref|YP_003318780.1| type II secretion system protein [Sphaerobacter thermophilus DSM 20745] gi|269785815|gb|ACZ37958.1| type II secretion system protein [Sphaerobacter thermophilus DSM 20745] Length = 326 Score = 109 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 104/187 (55%), Gaps = 1/187 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++RT F++ + + ++ S+RAG + + ++ ++ P+ EFRRV+ Sbjct: 141 ISVRARRRTNAFVNQLGDTITLMANSLRAGYSLLQTMELVARETPPPMSEEFRRVVREVG 200 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ E++S ++R +P +++ T I+VQ ++GGNL++ L + +R+R +K +++ Sbjct: 201 LGIPTQEAMSHLLRRVPSEDLDLLITAINVQHEVGGNLAQILDVIGETIRERVRIKGEIR 260 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + S +II +LP ++ L+ +PGY+ ++ P + + +G + MR Sbjct: 261 VLTAQQSISGYIISALPVGLALLLMVINPGYVMGMMRWPW-ICMPIGGVVLIFLGFIAMR 319 Query: 181 LMINFDV 187 ++N +V Sbjct: 320 KIVNIEV 326 >gi|307293453|ref|ZP_07573299.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] gi|306881519|gb|EFN12735.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] Length = 332 Score = 109 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 68/195 (34%), Positives = 112/195 (57%), Gaps = 8/195 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + LI KR +F FP+AL+++ R +R+GLP+++ + V+ + PV EF+ + E Sbjct: 138 VSRLINKRVQQFTAKFPDALELLTRGLRSGLPIAETLGVVSSEVPGPVGEEFKLITERIK 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G ++ +++ + E FF +++Q + GGNL+E L+NL+ +LR R MK K++ Sbjct: 198 IGKTMDQALQETADRLGTAEFQFFVISLAIQRETGGNLAETLSNLATVLRQRSQMKLKIR 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRGHMLL-------GVAAAFM 172 A+S E+KASA+IIG LPF V L+ + + YM+ DP G L +M Sbjct: 258 AMSSESKASAYIIGVLPFTVFGLICYINYDYMSPFFTPDPVGLFGLSTMQVVGIGGMCWM 317 Query: 173 LIGIMVMRLMINFDV 187 IG +M MINF++ Sbjct: 318 GIGAFIMAQMINFEI 332 >gi|94497257|ref|ZP_01303829.1| hypothetical protein SKA58_13683 [Sphingomonas sp. SKA58] gi|94423362|gb|EAT08391.1| hypothetical protein SKA58_13683 [Sphingomonas sp. SKA58] Length = 332 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 67/195 (34%), Positives = 113/195 (57%), Gaps = 8/195 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + LI KR ++F FP+AL+++ R +R+GLP+++ + V+ + PV EF+ + E Sbjct: 138 VGRLITKRVSQFNAKFPDALELLTRGLRSGLPIAETLGVVSNEIPGPVGEEFKLITERIK 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G ++ +++ + E FF +S+Q + GGNL+E L+NL+ +LR R MK K++ Sbjct: 198 IGRTMEQALQETADRLGTAEFQFFVITLSIQRETGGNLAETLSNLATVLRQRSQMKLKIR 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRG-------HMLLGVAAAFM 172 A+S E+KASA+IIG LPF V ++ + + YM DP G ++ +M Sbjct: 258 AMSSESKASAYIIGVLPFLVFGMICYINFDYMKPFFTPDPVGIFGLSTMQVIGIGGMCWM 317 Query: 173 LIGIMVMRLMINFDV 187 IG +M MINF++ Sbjct: 318 GIGAFIMAQMINFEI 332 >gi|297202076|ref|ZP_06919473.1| integral membrane protein [Streptomyces sviceus ATCC 29083] gi|297148029|gb|EDY58318.2| integral membrane protein [Streptomyces sviceus ATCC 29083] Length = 314 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 84/187 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR KF++ P I+ + AGL + A+ + + P E V Sbjct: 128 LNWQRQKRIEKFINQLPELARILANATHAGLALRTAIGMAAEELEAPAGEELANVANQLA 187 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ + +++ M + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ Sbjct: 188 VGVPMEDALDEMAKRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVR 247 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +++ + L L+ G + + P G + +A A +G +++R Sbjct: 248 TQLSQVNMTSYAVPVLGIGSLFLMNGVKDGALERMTGSPLGQGAVIIAFALYTVGFVLIR 307 Query: 181 LMINFDV 187 M DV Sbjct: 308 RMSRIDV 314 >gi|227819313|ref|YP_002823284.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234] gi|227338312|gb|ACP22531.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234] Length = 317 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 53/179 (29%), Positives = 104/179 (58%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R KF + P ALD+ RS+ AG P+ A++++ + DP+ +EF + + G++L + Sbjct: 138 RIRKFAEKLPEALDVANRSLAAGHPLPAAISLVAREMPDPIGTEFGLLSDELTYGVTLDD 197 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + + +++++ + +SVQ+ GGNL E L NLS+ LRDR +KAKV+++S E + Sbjct: 198 ALMNLNDRVGVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRDRFMLKAKVKSISAEGR 257 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +A + PF + ++ +P Y + + + G +++ M IG +++ M+NF+ Sbjct: 258 ITAIFMSLYPFLLFGMIRTLAPTYFDPVWDSGYGTIIVSSLLVVMAIGNVILYKMVNFE 316 >gi|260892928|ref|YP_003239025.1| Type II secretion system F domain protein [Ammonifex degensii KC4] gi|260865069|gb|ACX52175.1| Type II secretion system F domain protein [Ammonifex degensii KC4] Length = 313 Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 56/186 (30%), Positives = 113/186 (60%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++HL ++R A+F P+AL ++ ++RAG + A+ V+ + P+ EF R + Sbjct: 127 LRHLRRQRLARFQSQLPDALSLMANTMRAGFGMLQAMDVVRREMPPPISQEFGRTLAELG 186 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ + E++ R+ +P ++ T + +Q Q+GGNL+E L N++ +R+R +K +++ Sbjct: 187 LGMGVEEALERLSHRVPSDDLDLAVTAVIIQRQVGGNLAEILDNIATTIRERVRLKGEIR 246 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + + SA IIG LP ++ ++ +P Y+ LI +P G ++LG+ AA ++G++++R Sbjct: 247 ALTAQGRISALIIGLLPLALALILSLINPSYLLTLIYEPLGRIMLGLGAAGEIVGVLLLR 306 Query: 181 LMINFD 186 + + Sbjct: 307 KITEVE 312 >gi|83950070|ref|ZP_00958803.1| type II/IV secretion system protein, TadC subfamily protein [Roseovarius nubinhibens ISM] gi|83837969|gb|EAP77265.1| type II/IV secretion system protein, TadC subfamily protein [Roseovarius nubinhibens ISM] Length = 322 Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 101/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKRTA+ + P+A++++VRS+R G P S A++++ + SDP+ +EF + + Sbjct: 136 ISSKAKKRTARLEEQLPDAIELMVRSLRVGHPFSAAISIVANEVSDPLATEFGIIADEAA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L E++ M + +Q++ F + +++Q Q GGNL+E L LS+++R R + +V+ Sbjct: 196 YGRELGEALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILDGLSKVIRSRFKLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EAK S + P + P Y + + F+++ ++VMR Sbjct: 256 AITAEAKWSGNFLSGFPLMALIGIQLIDPNYYDEAMEHAFFIPAAITVGVFLVLNLIVMR 315 Query: 181 LMINFDV 187 ++N V Sbjct: 316 GLVNIKV 322 >gi|302381752|ref|YP_003817575.1| type II secretion system F domain protein [Brevundimonas subvibrioides ATCC 15264] gi|302192380|gb|ADK99951.1| Type II secretion system F domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 326 Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 82/186 (44%), Positives = 126/186 (67%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + K+R KF +F NA+D+IVR +++GLPV D +I +S PV EF+ ++E Sbjct: 140 VGFIGKRRLKKFSLEFANAVDVIVRGIKSGLPVHDCFKIIARESPAPVGPEFQTLVEGLG 199 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GL+L +++ +M +P E+ FF+ VI++Q + GGNL EAL+NL+ +LR R+ M K++ Sbjct: 200 VGLTLGQALEKMYERIPTPELRFFTIVIAIQQKTGGNLGEALSNLTTVLRARRMMGEKIK 259 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EA ASA IIGSLP V TLV T+P YM ++ D RG ++L +A +M +GI++M+ Sbjct: 260 ALSSEATASAGIIGSLPPVVMTLVGLTTPAYMGLMFTDFRGQVMLLGSAIWMGMGILMMK 319 Query: 181 LMINFD 186 MI+F Sbjct: 320 KMISFK 325 >gi|84385680|ref|ZP_00988711.1| hypothetical Flp pilus assembly protein TadB [Vibrio splendidus 12B01] gi|84379660|gb|EAP96512.1| hypothetical Flp pilus assembly protein TadB [Vibrio splendidus 12B01] Length = 300 Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 48/183 (26%), Positives = 95/183 (51%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+ +R +F + FP+AL+I++ +V AG + A++ + +P+ EF+ + + L Sbjct: 114 RFLVTRRRREFENTFPDALNILMSAVTAGDSLMQAISYVGDVMHNPIGREFKLMGDRLKL 173 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S + R + P E FF+ I GG L +A L R+L D + ++ K A Sbjct: 174 GESPEVVLQRSCKNYPYPEFLFFTVTIRANIARGGQLKGVMARLIRVLVDSRTLEKKKMA 233 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ EA+ SA I+ ++P ++ + +P + ++ DP G ++L L G+ ++ L Sbjct: 234 MTSEARISAKIVAAIPLIFMLILNYVNPDNVEFVLYDPEGRLVLFYVLGSELFGLFLVWL 293 Query: 182 MIN 184 ++ Sbjct: 294 LVR 296 >gi|170724974|ref|YP_001759000.1| type II secretion system protein [Shewanella woodyi ATCC 51908] gi|169810321|gb|ACA84905.1| type II secretion system protein [Shewanella woodyi ATCC 51908] Length = 302 Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 53/183 (28%), Positives = 91/183 (49%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 +L++KR F + FP+AL+I++ +V +G + A+A + + + EFR + E L Sbjct: 117 NYLMRKRKNAFDETFPDALNIMMSAVSSGESIMQAIAYVGQSLDNQIGLEFRDMGERLKL 176 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + R + P FF I GG L +A L R+L D + + K A Sbjct: 177 GEPPEQVFKRACKRFPYPTFLFFIVTIRANMSRGGQLKSVMARLIRVLMDARTLDKKKAA 236 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ EA+ SA I+ SLPF L+ + SP ++ ++ DP G +L +G+ ++ L Sbjct: 237 MTSEARLSAKIVASLPFFFMILLSYLSPQNLDFVLTDPSGRYILYYVVGSEALGMFIIWL 296 Query: 182 MIN 184 +I Sbjct: 297 LIR 299 >gi|229588192|ref|YP_002870311.1| hypothetical protein PFLU0644 [Pseudomonas fluorescens SBW25] gi|229360058|emb|CAY46912.1| putative membrane protein [Pseudomonas fluorescens SBW25] Length = 294 Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 97/184 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R + ++ P LD VRS+++G ++DAV V +P+R RV Sbjct: 109 IAWRYQQRVQRMVEQLPQLLDHSVRSLKSGRTLADAVLGGVESIENPLRDAMGRVQRNVR 168 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+SL +S+S + E F+ + V + GGN SE L NL +++R+R+ +++ Sbjct: 169 MGVSLPDSVSDFAEFYEQDEFRLFALGLKVNHRYGGNASELLENLIKMIREREQGARQLK 228 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + +A+++G LP + +PGY+ + +D G ++L A A L G +M Sbjct: 229 AMTGETRMTAYVLGGLPVLIVGYFLVVNPGYLMNMWHDGTGRIMLFGALAMDLGGTFIMW 288 Query: 181 LMIN 184 M+ Sbjct: 289 RMLR 292 >gi|163846104|ref|YP_001634148.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl] gi|222523839|ref|YP_002568309.1| type II secretion system protein [Chloroflexus sp. Y-400-fl] gi|163667393|gb|ABY33759.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl] gi|222447718|gb|ACM51984.1| type II secretion system protein [Chloroflexus sp. Y-400-fl] Length = 332 Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 42/191 (21%), Positives = 96/191 (50%), Gaps = 4/191 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R F + + + ++ ++R G + ++ ++ P +EFRRV++ Sbjct: 142 VNMRAAQRIKAFNNQLGDVITMMANALRGGYSFLQTLDMVSREAPPPAATEFRRVVQEVG 201 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S E++ ++R MP ++ T +++Q ++GGNL++ L + +R+R +K ++ Sbjct: 202 LGRSTEEALQNLLRRMPSDDLDLLITAVTIQMEVGGNLAQILDTIGHTIRERVRIKGEIS 261 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLL-GVAAAFMLIGI 176 L+ + + S+WII LP ++ + +P YM L P+ + + + +G Sbjct: 262 TLTAQGRISSWIITGLPIGLAMFITVVNPDYMAPLFTFGFPPQAWCCMPVASLFMIAMGY 321 Query: 177 MVMRLMINFDV 187 ++ +I+ +V Sbjct: 322 FAIQKIIDIEV 332 >gi|269105135|ref|ZP_06157829.1| flp pilus assembly protein TadB [Photobacterium damselae subsp. damselae CIP 102761] gi|312621085|ref|YP_003993813.1| flp pilus assembly protein tadb [Photobacterium damselae subsp. damselae] gi|268160585|gb|EEZ39084.1| flp pilus assembly protein TadB [Photobacterium damselae subsp. damselae CIP 102761] gi|311872806|emb|CBX86897.1| Flp pilus assembly protein TadB [Photobacterium damselae subsp. damselae] Length = 306 Score = 108 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 87/184 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+ KF + FP+AL+I+ ++ +G + A+ + V +EF + E Sbjct: 120 ISWLQKRERKKFEESFPDALNILTSAISSGESIIHAIVFVGKTLDGAVGNEFSLMGERLQ 179 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S + P FF + GG L + ++ L+RI+ D + ++ K Sbjct: 180 LGESPDNVFRKSCMRFPYPSFQFFVITLRANMHRGGQLKDVMSRLNRIMFDARAIEKKKY 239 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ EA+ SA I+ ++PF ++ + SP ++ +P G +L IGI ++ Sbjct: 240 ALTSEARISAKIVAAIPFIFLFMLQYLSPENYEFVMFNPGGRPILYYVIISESIGITIVW 299 Query: 181 LMIN 184 L++ Sbjct: 300 LLMK 303 >gi|255658707|ref|ZP_05404116.1| type II secretion system protein F domain protein [Mitsuokella multacida DSM 20544] gi|260849094|gb|EEX69101.1| type II secretion system protein F domain protein [Mitsuokella multacida DSM 20544] Length = 319 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 90/177 (50%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 KF + + L ++ ++RAG A +I + P+ E + V+ +LG +L ++ Sbjct: 142 KKFTNQLGDMLTMVANALRAGFSFMQAFELISREMDAPMGREVQLVVNEVNLGNTLESAL 201 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 M R + + T + +Q Q+GG+L+ L +S + +R M+ +V L+ + + S Sbjct: 202 DNMQRRVASPDFELVVTAVLIQRQVGGDLASILDTISETIAERVRMRREVMTLTAQGRLS 261 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 ++ LPF ++ ++ F P Y+ L+ D G +++G+A LIGI ++ + + Sbjct: 262 GIVLAILPFAMAGILTFIKPDYLKPLLEDEVGRIIIGIAIVSELIGIFFIKKITDIR 318 >gi|207728102|ref|YP_002256496.1| pilus assembly protein tadb [Ralstonia solanacearum MolK2] gi|206591347|emb|CAQ56959.1| pilus assembly protein tadb [Ralstonia solanacearum MolK2] Length = 325 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 47/175 (26%), Positives = 94/175 (53%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 P A D+I R++RAG + A+ + + P+ E V + G+S++++++ + Sbjct: 151 EAQLPEATDLISRALRAGHSLPSALEMAGDELPQPIGPELAIVFGQINYGVSMNDALAGL 210 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + +P+ ++ + I +Q + GGNL+E L N+ ++R R + KV+ LS E + WI Sbjct: 211 IDRVPVDDLRYLVIAILIQRESGGNLAEILDNVGTLIRKRLQLLDKVRVLSAEGRLGGWI 270 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + +LP ++ +VY +P M+ L DP G ++ A A G++ +R ++ + Sbjct: 271 LTALPPAMAVVVYQLNPELMSTLWKDPVGIHMMWYAIAMTCFGVLWIRHIVRIHI 325 >gi|157961841|ref|YP_001501875.1| type II secretion system protein [Shewanella pealeana ATCC 700345] gi|157846841|gb|ABV87340.1| type II secretion system protein [Shewanella pealeana ATCC 700345] Length = 325 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 99/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR K + FP+ALD++ R+++AG SDA+ ++ + P+ EF + + Sbjct: 139 LNRDTSKRMDKIEESFPDALDVLRRALQAGYSFSDAIKLVTEEMDGPLAKEFSLMFANIN 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 ++ + +P F++ + VQ + GGNL+E + NL+R++R R + +V+ Sbjct: 199 YSKDTKRALLGFIERVPSVSAMAFASAVMVQKETGGNLAENINNLARVIRLRFTFRRRVR 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + SAWI+ LPF + ++Y +PGY+ L G+ LL A M +G M + Sbjct: 259 TLSAEGRLSAWILILLPFVLFAVIYIQTPGYVGELTGTEEGNQLLIWGAIGMFVGGMWIS 318 Query: 181 LMINFDV 187 +I D+ Sbjct: 319 KLIRIDM 325 >gi|167589558|ref|ZP_02381946.1| type II secretion system protein [Burkholderia ubonensis Bu] Length = 235 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 60/183 (32%), Positives = 118/183 (64%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI++ +FL+ FP+A+D+IVR+VRAG+PV+ A++ + +++PVRS FR + ++ +G Sbjct: 50 LIRRFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRVGA 109 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + +++ + + + SFF+ + +Q + GG+L E L LS I+R R++++ K +AL+ Sbjct: 110 DLKDVLTQAADRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRSRRDIRLKSRALT 169 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + + II ++PF + ++ + Y+ +L GH +L +AAA ++IG++V+R + Sbjct: 170 AEGRITTNIISAVPFVMIGALFLVNRPYIMLLFTTHAGHTMLTIAAALLVIGLLVIRKIS 229 Query: 184 NFD 186 + Sbjct: 230 RLE 232 >gi|197106492|ref|YP_002131869.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1] gi|196479912|gb|ACG79440.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1] Length = 319 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 61/185 (32%), Positives = 99/185 (53%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K + +R A P AL+IIVRS+ AG PV A+A++ + SDPV +EF + Sbjct: 134 KFVAGRRAAALGFQLPQALEIIVRSLEAGHPVPTAIALVGREMSDPVGTEFGMAADEIAY 193 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G +L ++I RM +V F+ + +Q + GGNL+ L + +R+R M+ K++A Sbjct: 194 GANLEQAIERMAERCQHPDVDLFAATVRLQERTGGNLTGLLKLNASTIRERHKMRLKIKA 253 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 S E +ASA I+ + PF ++ SP + +I++P L ++ IG +VMR Sbjct: 254 ASAEGRASAMILSAAPFIAVGMIMIISPKFYGDVIHEPAVKWGLLGLTVWVGIGNLVMRR 313 Query: 182 MINFD 186 MI+ Sbjct: 314 MIDMK 318 >gi|46201039|ref|ZP_00055942.2| COG4965: Flp pilus assembly protein TadB [Magnetospirillum magnetotacticum MS-1] Length = 331 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 80/187 (42%), Positives = 121/187 (64%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR F F +ALD++VR +R+GLP+ + +A+I + DPV +EFR++ E Sbjct: 145 LGVAAGKRLKAFTAQFADALDVVVRGIRSGLPLGECIAIIGREMPDPVGAEFRQITEGTR 204 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GL+L E+++R V MP+ E+ +F+ V+++Q Q GGNL+E LA LS +LR RK M+ KV Sbjct: 205 IGLTLHEAMTRAVERMPMAEMRYFAIVLAIQQQTGGNLAETLAKLSEVLRARKRMRDKVL 264 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + EA+ASA IIGSLP V ++ +P Y+ VL G++LL + G+MVMR Sbjct: 265 SYAAEARASAAIIGSLPLLVVAMLGMLAPQYIGVLFTTEPGNLLLAIGILTEAAGVMVMR 324 Query: 181 LMINFDV 187 MINFD+ Sbjct: 325 GMINFDI 331 >gi|159901126|ref|YP_001547373.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC 23779] gi|159894165|gb|ABX07245.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC 23779] Length = 329 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 45/191 (23%), Positives = 107/191 (56%), Gaps = 4/191 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + R F + + + ++ S+R+G + ++ ++ ++ P+ EFRRV++ Sbjct: 139 VSFKQGSRLKAFNNQLGDTVGLLANSLRSGYSLLQSMDLVSREAPPPISVEFRRVVQEVG 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGLSL + ++ ++R +P ++ + I++Q+++GGNL+E L ++ +R+R +K +++ Sbjct: 199 LGLSLEDGMNNLLRRVPSDDLDLMVSAINIQAEVGGNLAEILDTIAHTIRERVRIKGQIR 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND---PRGHMLLGVAAAFMLI-GI 176 L+ +A+ S +++ LP ++ ++ +P YM L+ P + V +A M+I G Sbjct: 259 VLTSQARYSGYVVTFLPISIAVIITMLNPDYMAPLMTIGMPPDAWCCMPVCSAMMMIGGF 318 Query: 177 MVMRLMINFDV 187 ++ ++N ++ Sbjct: 319 FAIKSIVNIEI 329 >gi|239929199|ref|ZP_04686152.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672] Length = 314 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 84/187 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR KF++ P I+ + +AGL + A+ + + P E +V Sbjct: 128 LNWQRQKRIEKFINQLPELARILANATQAGLALRTAIGMAAEELEAPAGEELSKVANQLA 187 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S+ +++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ Sbjct: 188 VGASMDDALGELADRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVR 247 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +++ + L L+ G + + P G + +A +G +++R Sbjct: 248 TQLSQVSMTSYAVPVLGVGSLFLMNGVKDGALERMTGSPVGQAAVIIAFGLYAVGFVLIR 307 Query: 181 LMINFDV 187 + DV Sbjct: 308 RLSRIDV 314 >gi|322419940|ref|YP_004199163.1| Type II secretion system F domain-containing protein [Geobacter sp. M18] gi|320126327|gb|ADW13887.1| Type II secretion system F domain protein [Geobacter sp. M18] Length = 321 Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats. Identities = 54/180 (30%), Positives = 108/180 (60%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R KF + FP+AL +I RS+RAG + A+ ++ + +DPV F+ E Q Sbjct: 135 LHFKIRQRLEKFTELFPDALTMIARSLRAGHSFNSAIQLVGEEIADPVGELFKTAYEQQL 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGL ++E+++ + + ++ FF+T I++ + +GGNLSE L NL++ +R+R ++ +V+ Sbjct: 195 LGLRITETLTNLNERIESLDLRFFTTAIAINNDVGGNLSEILENLAKTIRERLKIRRQVR 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + + + +++G+LP + +P Y +VL + +G +L A ++G+ V+R Sbjct: 255 VYTAQGRMTGYVLGALPVFTFLIFNVLNPKYESVLYKETKGLYVLAFAVVLQVVGLFVIR 314 >gi|83749634|ref|ZP_00946617.1| TRANSMEMBRANE TIGHT ADHERENCE TADB-RELATED PROTEIN; tadB1 [Ralstonia solanacearum UW551] gi|207744162|ref|YP_002260554.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609] gi|83723695|gb|EAP70890.1| TRANSMEMBRANE TIGHT ADHERENCE TADB-RELATED PROTEIN; tadB1 [Ralstonia solanacearum UW551] gi|206595566|emb|CAQ62493.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609] Length = 325 Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 47/175 (26%), Positives = 94/175 (53%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 P A D+I R++RAG + A+ + + P+ E V + G+S++++++ + Sbjct: 151 ETQLPEATDLISRALRAGHSLPSALEMAGDELPQPIGPELAIVFGQINYGVSMNDALAGL 210 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + +P+ ++ + I +Q + GGNL+E L N+ ++R R + KV+ LS E + WI Sbjct: 211 IDRVPVDDLRYLVIAILIQRESGGNLAEILDNVGTLIRKRLQLLDKVRVLSAEGRLGGWI 270 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + +LP ++ +VY +P M+ L DP G ++ A A G++ +R ++ + Sbjct: 271 LTALPPAMAVVVYQLNPELMSTLWKDPVGIHMMWYAIAMTCFGVLWIRHIVRIHI 325 >gi|167902782|ref|ZP_02489987.1| type II secretion system protein [Burkholderia pseudomallei NCTC 13177] Length = 223 Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 116/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 36 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 95 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 96 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 155 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R Sbjct: 156 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 215 Query: 182 MINFD 186 + N D Sbjct: 216 IANLD 220 >gi|291437533|ref|ZP_06576923.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291340428|gb|EFE67384.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 312 Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 84/187 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR KF++ P I+ + +AGL + A+ + + P E +V Sbjct: 126 LNWQRQKRIEKFINQLPELARILANATQAGLALRTAIGMAAEELEAPAGEELSKVANQLA 185 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S+ +++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ Sbjct: 186 VGASMDDALGELADRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVR 245 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +++ + L L+ G + + P G + +A +G +++R Sbjct: 246 TQLSQVSMTSYAVPVLGVGSLFLMNGVKDGALERMTGSPVGQAAVIIAFGLYAVGFVLIR 305 Query: 181 LMINFDV 187 + DV Sbjct: 306 RLSRIDV 312 >gi|167624198|ref|YP_001674492.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4] gi|167354220|gb|ABZ76833.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4] Length = 325 Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 99/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR K + FP+ALD++ R+++AG SDA+ ++ + P+ EF + + Sbjct: 139 LNRDTAKRMEKIEESFPDALDVLRRALQAGYSFSDAIKLVTEEMEGPLAKEFSLMFANIN 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 ++ + +P F++ + VQ + GGNL+E + NL+R++R R + +V+ Sbjct: 199 YSKDTKRALLGFIERVPSVSAMAFASAVMVQKETGGNLAENINNLARVIRLRFTFRRRVR 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + SAWI+ LPF + ++Y +PGY+ L G+ LL A M +G M + Sbjct: 259 TLSAEGRLSAWILILLPFVLFAVIYIQTPGYVGELTGTEEGNQLLIWGAIGMFVGGMWIS 318 Query: 181 LMINFDV 187 +I D+ Sbjct: 319 KLIRIDM 325 >gi|126452248|ref|YP_001066154.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|242314755|ref|ZP_04813771.1| type II secretion system protein [Burkholderia pseudomallei 1106b] gi|126225890|gb|ABN89430.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|242137994|gb|EES24396.1| type II secretion system protein [Burkholderia pseudomallei 1106b] Length = 331 Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 116/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 144 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 203 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 204 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 263 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R Sbjct: 264 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 323 Query: 182 MINFD 186 + N D Sbjct: 324 IANLD 328 >gi|163801673|ref|ZP_02195571.1| hypothetical Flp pilus assembly protein TadB [Vibrio sp. AND4] gi|159174590|gb|EDP59392.1| hypothetical Flp pilus assembly protein TadB [Vibrio sp. AND4] Length = 300 Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 49/183 (26%), Positives = 99/183 (54%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 ++L+KKR F + FP+AL+I++ ++ AG + A++ + +DP+ EF+ + + L Sbjct: 114 RYLVKKRRTNFENTFPDALNILMSAITAGDSLMQAISYVGDVMNDPIGVEFKLMGDRLKL 173 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + R + P E FF+ + GG L LA L R+L D + + K A Sbjct: 174 GETPEVVLQRSCKNYPYPEFLFFAVTLRANIARGGQLKGVLARLIRVLVDARTLDKKKMA 233 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ EA+ SA I+ ++P ++ + +P +N +++DP G ++L +G++++ L Sbjct: 234 MTSEARISAKIVAAIPVIFMIILNYINPDNLNFVLHDPSGRIVLFYVLGSEFLGLLIVWL 293 Query: 182 MIN 184 ++ Sbjct: 294 LVR 296 >gi|121599706|ref|YP_993002.1| Flp pilus assembly protein TadB [Burkholderia mallei SAVP1] gi|124386517|ref|YP_001026334.1| hypothetical protein BMA10229_A0332 [Burkholderia mallei NCTC 10229] gi|126449976|ref|YP_001080392.1| type II secretion system protein [Burkholderia mallei NCTC 10247] gi|121228516|gb|ABM51034.1| Flp pilus assembly protein TadB [Burkholderia mallei SAVP1] gi|124294537|gb|ABN03806.1| putative membrane protein [Burkholderia mallei NCTC 10229] gi|126242846|gb|ABO05939.1| type II secretion system protein [Burkholderia mallei NCTC 10247] Length = 331 Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 116/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 144 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 203 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 204 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 263 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R Sbjct: 264 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 323 Query: 182 MINFD 186 + N D Sbjct: 324 IANLD 328 >gi|53719427|ref|YP_108413.1| hypothetical protein BPSL1814 [Burkholderia pseudomallei K96243] gi|76811973|ref|YP_333440.1| hypothetical protein BURPS1710b_2045 [Burkholderia pseudomallei 1710b] gi|126441337|ref|YP_001058912.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|134282297|ref|ZP_01769002.1| type II secretion system protein [Burkholderia pseudomallei 305] gi|217421505|ref|ZP_03453009.1| type II secretion system protein [Burkholderia pseudomallei 576] gi|226196396|ref|ZP_03791978.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|237812169|ref|YP_002896620.1| type II secretion system protein [Burkholderia pseudomallei MSHR346] gi|254259104|ref|ZP_04950158.1| type II secretion system protein [Burkholderia pseudomallei 1710a] gi|52209841|emb|CAH35813.1| putative membrane protein [Burkholderia pseudomallei K96243] gi|76581426|gb|ABA50901.1| putative membrane protein [Burkholderia pseudomallei 1710b] gi|126220830|gb|ABN84336.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|134246335|gb|EBA46424.1| type II secretion system protein [Burkholderia pseudomallei 305] gi|217395247|gb|EEC35265.1| type II secretion system protein [Burkholderia pseudomallei 576] gi|225931613|gb|EEH27618.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|237506496|gb|ACQ98814.1| type II secretion system protein [Burkholderia pseudomallei MSHR346] gi|254217793|gb|EET07177.1| type II secretion system protein [Burkholderia pseudomallei 1710a] Length = 331 Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 116/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 144 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 203 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 204 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 263 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R Sbjct: 264 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 323 Query: 182 MINFD 186 + N D Sbjct: 324 IANLD 328 >gi|197123314|ref|YP_002135265.1| type II secretion system protein [Anaeromyxobacter sp. K] gi|196173163|gb|ACG74136.1| type II secretion system protein [Anaeromyxobacter sp. K] Length = 320 Score = 107 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 61/184 (33%), Positives = 102/184 (55%), Gaps = 1/184 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 KR+AK + P ALD++ RS+RAG V+ A V+ + +PV EF R E Q LGL Sbjct: 136 ARAKRSAKLSEQLPEALDMMARSLRAGHAVTAAFQVVASEMPEPVSVEFARAYEEQRLGL 195 Query: 64 SLSESISRMVRYMP-LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +L ++ +M P ++ F+ +Q + GGNL+E L + +R R K++AL Sbjct: 196 TLERAVVQMSERCPGNGDMKIFAVSAVIQRETGGNLAEILDQIGETIRQRYRFYGKLRAL 255 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E +ASA I+G+LPF V+ + +P Y+ VL +G M++ A+ ++G++ + + Sbjct: 256 TGEGRASAVILGALPFAVAVALSILNPEYLMVLPGTAKGQMIILGASVSWVVGLLWLYRL 315 Query: 183 INFD 186 D Sbjct: 316 TQVD 319 >gi|21223383|ref|NP_629162.1| integral membrane protein [Streptomyces coelicolor A3(2)] gi|8218172|emb|CAB92603.1| putative integral membrane protein [Streptomyces coelicolor A3(2)] Length = 316 Score = 107 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 85/187 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR KF++ P I+ + +AGL + A+ + + P E +V + Sbjct: 130 LNWQRQKRIEKFINQLPELARILANATQAGLALRTAIGMAAEELEAPAGEELGKVADQLA 189 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S+ +++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ Sbjct: 190 IGASMDDALGELAGRLPSRELVVLVTTLVLSNRAGGQVVGALRNLTETLEERKETRREVR 249 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +++ + L L+ G + + P G + A A +G +++R Sbjct: 250 TQLSQVTMTSYAVPVLGIGSLLLMNGVKDGALERMTGSPAGQAAVITAFALYAVGFVLIR 309 Query: 181 LMINFDV 187 + DV Sbjct: 310 RLSRIDV 316 >gi|149909543|ref|ZP_01898197.1| TadB-like protein involved in pilus formation and/or proteinsecretion [Moritella sp. PE36] gi|149807448|gb|EDM67399.1| TadB-like protein involved in pilus formation and/or proteinsecretion [Moritella sp. PE36] Length = 305 Score = 107 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 85/182 (46%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L ++ +F + FP AL+++ +V +G + A+ + V EF+ + + LG Sbjct: 121 WLQRREKKQFEEAFPEALNMLTSAVSSGESIMHAIIFVGTALDGEVGKEFKLMGDRLRLG 180 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S + P FF + + GG L E + L+R++ D + ++ K AL Sbjct: 181 DSPDSVFKKSCNRFPYPAFQFFVITLRANMRHGGQLKEIMTRLNRLMFDARAIEKKKFAL 240 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ASA I+G++PF L+ + SP ++ P G +L IGI ++ + Sbjct: 241 TSEARASAKIVGAIPFVFLFLLQYLSPENFEFVMFHPSGRPILYYVLISEAIGISIIWAL 300 Query: 183 IN 184 + Sbjct: 301 MK 302 >gi|254178308|ref|ZP_04884963.1| type II secretion system protein [Burkholderia mallei ATCC 10399] gi|160699347|gb|EDP89317.1| type II secretion system protein [Burkholderia mallei ATCC 10399] Length = 331 Score = 107 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 116/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 144 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 203 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 204 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 263 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R Sbjct: 264 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 323 Query: 182 MINFD 186 + N D Sbjct: 324 IANLD 328 >gi|256785514|ref|ZP_05523945.1| integral membrane protein [Streptomyces lividans TK24] gi|289769410|ref|ZP_06528788.1| integral membrane protein [Streptomyces lividans TK24] gi|289699609|gb|EFD67038.1| integral membrane protein [Streptomyces lividans TK24] Length = 316 Score = 107 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 85/187 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR KF++ P I+ + +AGL + A+ + + P E +V + Sbjct: 130 LNWQRQKRIEKFINQLPELARILANATQAGLALRTAIGMAAEELEAPAGEELGKVADQLA 189 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S+ +++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ Sbjct: 190 IGASMDDALGELAGRLPSRELVVLVTTLVLSNRAGGQVVGALRNLTETLEERKETRREVR 249 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +++ + L L+ G + + P G + A A +G +++R Sbjct: 250 TQLSQVTMTSYAVPVLGIGSLLLMNGVKDGALERMTGSPAGQAAVITAFALYAVGFVLIR 309 Query: 181 LMINFDV 187 + DV Sbjct: 310 RLSRIDV 316 >gi|156744076|ref|YP_001434205.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] gi|156235404|gb|ABU60187.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] Length = 323 Score = 107 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 106/187 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 M+ ++R F D P LD+I S+R G + ++A + G +P+R+E RRV + Sbjct: 137 MRIRRQRRKQAFSDQLPETLDLITASMRGGFSLVQSLANVAGDVQEPMRTELRRVFQEVQ 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGLS+++++ +V+ M ++ T I + +++GGNL + L N+S +R+R ++ +V+ Sbjct: 197 LGLSITQALDNLVQRMESTDLDLVVTAIKIHARVGGNLGQILENISTTMRERAKLRREVR 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ + S+++IG+LPF ++ +++ +P YM L + A + G +++R Sbjct: 257 VITSMQRISSYVIGALPFALALIIFTINPTYMMRLFQPGLILCIPIGAFVSSVAGFLIIR 316 Query: 181 LMINFDV 187 +++ + Sbjct: 317 KIVDVRI 323 >gi|149175287|ref|ZP_01853909.1| secretion system protein TadB [Planctomyces maris DSM 8797] gi|148845896|gb|EDL60237.1| secretion system protein TadB [Planctomyces maris DSM 8797] Length = 323 Score = 107 bits (266), Expect = 8e-22, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 105/187 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R KF P+AL+++ R++R+G +S ++V+V + P+ +EF E Q+ Sbjct: 137 LLFRRNRRFKKFGQQLPDALELVGRALRSGHSLSSGLSVVVQEMPPPISTEFALAYEEQN 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ + E++ M+ MP ++ FF T + +Q Q GG+L+E L + I+R R + +VQ Sbjct: 197 LGIPIGEALKNMLTRMPNLDLKFFVTAVVIQRQAGGDLAEILDKIGYIIRQRFKIMGQVQ 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ E + S ++ +LP + VY+ +P Y+ +L D G ++ ++G + ++ Sbjct: 257 ALTGEGRISGVVLMALPIALFFAVYYLNPDYVMLLFTDELGRKMIAGGIVLQVLGALWIK 316 Query: 181 LMINFDV 187 ++N + Sbjct: 317 KIVNIKI 323 >gi|254198194|ref|ZP_04904616.1| type II secretion system protein [Burkholderia pseudomallei S13] gi|169654935|gb|EDS87628.1| type II secretion system protein [Burkholderia pseudomallei S13] Length = 331 Score = 107 bits (266), Expect = 8e-22, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 116/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 144 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 203 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 204 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 263 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R Sbjct: 264 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 323 Query: 182 MINFD 186 + N D Sbjct: 324 IANLD 328 >gi|319795560|ref|YP_004157200.1| type II secretion system f domain [Variovorax paradoxus EPS] gi|315598023|gb|ADU39089.1| Type II secretion system F domain [Variovorax paradoxus EPS] Length = 285 Score = 107 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 50/185 (27%), Positives = 95/185 (51%), Gaps = 1/185 (0%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 KKR + + P+AL I ++RAG +S AV V+V P+ EF V++ Q LG Sbjct: 102 WQRKKRRQQIESELPDALLFIASALRAGSALSVAVQVLVRDQQGPLGQEFGLVLKEQRLG 161 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +S ++I +M + + + + + V ++GGNLSE L L+ LR + ++ ++QAL Sbjct: 162 VSFDDAIQKMSQRLGIPDFVLVVVALRVSKEVGGNLSEPLQVLAETLRRKAILEGRIQAL 221 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + + ++ P + ++Y P M +L + G +L V + +G ++R + Sbjct: 222 TAQGRIQGLVMTLFPLLLMGVLYLMQPT-MGLLFSTKIGWAVLFVIGVMLFLGYAMIRKI 280 Query: 183 INFDV 187 + D+ Sbjct: 281 VAIDI 285 >gi|281356957|ref|ZP_06243447.1| Type II secretion system F domain protein [Victivallis vadensis ATCC BAA-548] gi|281316515|gb|EFB00539.1| Type II secretion system F domain protein [Victivallis vadensis ATCC BAA-548] Length = 294 Score = 107 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 99/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ L +R KF +AL +I S++AG ++ A+ + Q+ P+ EFR +I+ Sbjct: 108 LRQLKVRRLEKFNFQLEDALGVISSSLKAGFSINQALEEVAEQNIHPISVEFRLLIQEIR 167 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ + +++ M R + ++ +T I Q GG L+ L ++ ++R+R + KV+ Sbjct: 168 LGVPVEQALENMNRRLRSEDFELVATAILTARQTGGELTGTLERVASLIRERVRISNKVR 227 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + A +I P + +++ +P + + +P G LL VA F +IG +++R Sbjct: 228 ALTALGRLQAILIALTPVALLIGLWWINPVMIRAFVTNPIGIALLIVAGIFDVIGFLIIR 287 Query: 181 LMINFDV 187 ++ +V Sbjct: 288 RIVTIEV 294 >gi|295836765|ref|ZP_06823698.1| integral membrane protein [Streptomyces sp. SPB74] gi|295826196|gb|EFG64731.1| integral membrane protein [Streptomyces sp. SPB74] Length = 314 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 89/187 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR F+ P+ ++ + AGL + A+A+ + +P E V + Sbjct: 128 LNWQRAKRIEAFISQLPDVARLLANATAAGLALRTALAMAAEELENPAGEELSNVADQLA 187 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S+ E++ + R +P +E+ T +++ ++ GG + +L NL+ L +RK + +V+ Sbjct: 188 LGRSVDEALDELQRRLPSRELVVLVTTLALSNKAGGTVVGSLRNLTVTLEERKETRREVR 247 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + E A+A+ + +L LV + G ++ + G L+ ++ +G V+R Sbjct: 248 TMLSEVNATAFTVPALGLGSLLLVNAQNDGALHRVTGSGLGQFLILLSLGLYTVGFFVIR 307 Query: 181 LMINFDV 187 + DV Sbjct: 308 RLGRIDV 314 >gi|302521639|ref|ZP_07273981.1| integral membrane protein [Streptomyces sp. SPB78] gi|302430534|gb|EFL02350.1| integral membrane protein [Streptomyces sp. SPB78] Length = 242 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 88/187 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR F+ P+ ++ + AGL + A+A+ + +P E V + Sbjct: 56 LNWQRAKRIEAFISQLPDVARLLANATAAGLALRTALAMAAEELENPAGEELSNVADQLA 115 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S+ E++ + R +P +E+ T + + ++ GG + +L NL+ L +RK + +V+ Sbjct: 116 LGRSIDEALDELSRRLPSRELVVLVTTLVLSNKAGGTVVGSLRNLTVTLEERKETRREVR 175 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + E A+A+ + +L LV + G ++ + G L+ ++ +G V+R Sbjct: 176 TMLSEVNATAFTVPALGLGSLLLVNAQNDGALHRVTGSGLGQFLILLSLGLYTVGFFVIR 235 Query: 181 LMINFDV 187 + DV Sbjct: 236 RLGRIDV 242 >gi|209546475|ref|YP_002278393.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537719|gb|ACI57653.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 317 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 57/184 (30%), Positives = 105/184 (57%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R KF P ALD+ RS+ AG P+ A++++ + DP+ +EF + + G Sbjct: 133 RARARRMRKFELKLPEALDVANRSLAAGHPLPAAISLVAREMPDPIGTEFGLLSDELTYG 192 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++L +++ + + +++++ + +SVQ+ GGNL E L NLS+ LRDR +KAKV+A+ Sbjct: 193 VTLDDALVNLADRVGVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRDRSMLKAKVKAI 252 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + +A + PF + ++ SP Y + + G +++ V A M IG +++ M Sbjct: 253 SSEGRITAIFMSMYPFLLYAMIKALSPTYFDPVWESGHGAVVVTVLLAVMAIGNVILYKM 312 Query: 183 INFD 186 +NF+ Sbjct: 313 VNFE 316 >gi|329890993|ref|ZP_08269336.1| bacterial type II secretion system protein F domain protein [Brevundimonas diminuta ATCC 11568] gi|328846294|gb|EGF95858.1| bacterial type II secretion system protein F domain protein [Brevundimonas diminuta ATCC 11568] Length = 327 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 80/186 (43%), Positives = 120/186 (64%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + K R KF F +A+DI+VR ++ GLPV D +I +S +P+ EFR ++E Sbjct: 141 IGMKAKARMKKFSLAFADAIDILVRGIKTGLPVHDCFKIIARESPEPLAGEFRTLVEGMG 200 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GL+L++++ +M MP E+ FF+ VI++Q + GGNL+EAL NL+ +LR R+ M K++ Sbjct: 201 VGLTLAQALDKMYERMPTPELKFFAIVIAIQQKSGGNLAEALGNLTTVLRARRMMVEKIK 260 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EA ASA II SLP V LV ++P YM ++ D RG ++L AA +M G+ VM+ Sbjct: 261 ALSSEAIASAGIIASLPPAVMILVMLSNPSYMMLMFTDIRGQVMLMGAALWMATGVFVMK 320 Query: 181 LMINFD 186 MI+F Sbjct: 321 RMISFK 326 >gi|153833200|ref|ZP_01985867.1| TadB [Vibrio harveyi HY01] gi|156977405|ref|YP_001448311.1| Flp pilus assembly protein TadB [Vibrio harveyi ATCC BAA-1116] gi|148870471|gb|EDL69386.1| TadB [Vibrio harveyi HY01] gi|156528999|gb|ABU74084.1| hypothetical protein VIBHAR_06192 [Vibrio harveyi ATCC BAA-1116] Length = 300 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 94/183 (51%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 ++L+ +R F + FP+AL+I++ +V AG + A++ + + + EF+ + + L Sbjct: 114 RYLVTRRRRDFENTFPDALNILMSAVTAGDSLMQAISYVGDVMDNSIGREFKLMGDRLKL 173 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S + R + P E FF+ + GG L LA L R+L D + ++ K A Sbjct: 174 GESPEVVLQRSCKNYPYPEFLFFTVTLRANIARGGQLKGVLARLIRVLVDARTLEKKKMA 233 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ EA+ SA I+ ++P ++ + +P +N ++ DP G ++L G+ ++ L Sbjct: 234 MTSEARISAKIVAAIPLIFMIILNYVNPDNVNFVLYDPSGRLVLFYVLGSEFFGLFIVWL 293 Query: 182 MIN 184 ++ Sbjct: 294 LVR 296 >gi|85705156|ref|ZP_01036256.1| type II/IV secretion system protein, TadC subfamily protein [Roseovarius sp. 217] gi|85670478|gb|EAQ25339.1| type II/IV secretion system protein, TadC subfamily protein [Roseovarius sp. 217] Length = 322 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 51/187 (27%), Positives = 99/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR A + P+A++++VRS+R G P S A+ ++ + DP+ +EF + + Sbjct: 136 ISMKASKRMALLEEQLPDAIELMVRSLRVGHPFSSAIGIVATEVGDPLATEFGIIADEAA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+ Sbjct: 196 YGRDMGEALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFRLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EAK S + P + P Y N + + V F+++ ++VMR Sbjct: 256 AITAEAKWSGKFLSGFPIMALIGIQVIKPDYYNEAMEHAFFIPAVLVVGVFLVMNLIVMR 315 Query: 181 LMINFDV 187 ++N V Sbjct: 316 ALVNIKV 322 >gi|319791196|ref|YP_004152836.1| type II secretion system f domain [Variovorax paradoxus EPS] gi|315593659|gb|ADU34725.1| Type II secretion system F domain [Variovorax paradoxus EPS] Length = 285 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 98/185 (52%), Gaps = 1/185 (0%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 KKR + + P+AL I ++RAG +S A+ V+V P+ EF V++ Q LG Sbjct: 102 WQRKKRRQQIESELPDALLFIASALRAGSALSVAIQVLVRDQVGPLGQEFGLVLKEQRLG 161 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +S ++I +M + + + + + V ++GGNLSE L L+ LR + ++ +++AL Sbjct: 162 VSFDDAIQKMSQRLGIPDFVLVVVALRVSKEVGGNLSEPLQVLAETLRRKAILEGRIKAL 221 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + + ++ P + ++Y P M++L G ++L V A +++G ++R + Sbjct: 222 TAQGRIQGLVMTLFPLLLMGVLYLMQPT-MSLLFTTTIGWVVLTVIAIMLMLGYAMIRKI 280 Query: 183 INFDV 187 + D+ Sbjct: 281 VAIDI 285 >gi|113867006|ref|YP_725495.1| flp pilus assembly protein TadB [Ralstonia eutropha H16] gi|113525782|emb|CAJ92127.1| flp pilus assembly protein TadB [Ralstonia eutropha H16] Length = 282 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 98/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K + +KR D P+AL ++ ++RAG A+ +V +S P+ EF ++ Sbjct: 96 VKKMQRKRLMAIEDQMPDALLMMSSALRAGASFPMALESVVAESRPPISQEFDLLMREVR 155 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L +++ M + +P+ + + I++ ++GGNL+E L +++R LR++ M+ K++ Sbjct: 156 LGVDLMDALRNMEKRIPVPDFLMVTAAITISREVGGNLAETLESVARTLREKHQMEGKIR 215 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + K ++ LP + ++ P M L + P G L V A L+G + Sbjct: 216 ALTAQGKMQGLVMTGLPLFLIVVLNHMEPVAMAPLFSSPIGWGTLSVIAVMELLGYKAIS 275 Query: 181 LMINFDV 187 + + DV Sbjct: 276 KITHIDV 282 >gi|167919044|ref|ZP_02506135.1| type II secretion system protein [Burkholderia pseudomallei BCC215] Length = 216 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 116/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 29 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 88 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 89 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 148 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R Sbjct: 149 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 208 Query: 182 MINFD 186 + N D Sbjct: 209 IANLD 213 >gi|239943898|ref|ZP_04695835.1| putative integral membrane protein [Streptomyces roseosporus NRRL 15998] gi|239990352|ref|ZP_04711016.1| putative integral membrane protein [Streptomyces roseosporus NRRL 11379] gi|291447361|ref|ZP_06586751.1| integral membrane protein [Streptomyces roseosporus NRRL 15998] gi|291350308|gb|EFE77212.1| integral membrane protein [Streptomyces roseosporus NRRL 15998] Length = 314 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 86/187 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KRT +F++ P I+ + +AGL + ++++ + +P E RV Sbjct: 128 LNWQRIKRTERFINQLPELSRILANATQAGLALRTSLSMAAEELENPAGEELARVARRLA 187 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G L +++S + +P +E+ T + + ++ GG + +L NL+ L +RK + +V+ Sbjct: 188 VGEPLEDALSELTDRLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTETLEERKETRREVK 247 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +A+ + L+ PG ++ + G + VA IG +V+R Sbjct: 248 TQLSQVTVTAYAVPIFGVGAMLLMNAVMPGALDRMTGAFIGQAAVVVAIVLYAIGFVVIR 307 Query: 181 LMINFDV 187 + DV Sbjct: 308 RLSRIDV 314 >gi|149188859|ref|ZP_01867149.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1] gi|148837279|gb|EDL54226.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1] Length = 300 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 51/183 (27%), Positives = 99/183 (54%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+ +R F + FP+AL+I++ +V AG + A++ + ++P+ EF+ + + L Sbjct: 114 RFLVGRRRRDFENTFPDALNILMSAVTAGDSLMQAISYVGEAMNNPIGREFKLMGDRLKL 173 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S + R + P E FF+ I GG L LA L R+L D + ++ K A Sbjct: 174 GESPEVVLQRSCKNYPYPEFLFFTVTIRANIARGGQLKGVLARLIRVLVDSRTLEKKKMA 233 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ EA+ SA I+ ++P + ++ + +P ++ ++NDP+G +L LIG+ ++ L Sbjct: 234 MTSEARISAKIVAAIPLIFTVILNYVNPANVDFVLNDPQGQYVLFYVLGSELIGLSIVWL 293 Query: 182 MIN 184 ++ Sbjct: 294 LVR 296 >gi|167911028|ref|ZP_02498119.1| type II secretion system protein [Burkholderia pseudomallei 112] Length = 217 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 116/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 30 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 89 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 90 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 149 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R Sbjct: 150 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 209 Query: 182 MINFD 186 + N D Sbjct: 210 IANLD 214 >gi|323495641|ref|ZP_08100712.1| flp pilus assembly protein tadb [Vibrio sinaloensis DSM 21326] gi|323319276|gb|EGA72216.1| flp pilus assembly protein tadb [Vibrio sinaloensis DSM 21326] Length = 306 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 90/184 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 M L +++ +F FP+AL+++ +V +G + ++ + V EF+R+ E Sbjct: 120 MSWLEQRQQKEFEMAFPDALNMLASAVSSGESLMHSIMFVGKTLEGSVGEEFKRMGERLQ 179 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S + P + FF + Q GG L + + L+R++ D + ++ K Sbjct: 180 LGESPDSVFKKSCNRFPYRSFQFFVITLRANMQRGGQLKDVITRLNRLMFDARAIEKKKY 239 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ EA+ SA I+ ++PF ++ + SP + ++N P+G +L IGI ++ Sbjct: 240 ALTSEARTSAKIVAAIPFFFLFILQYLSPENYDFVMNHPKGQPILYYMLISEAIGIGIIW 299 Query: 181 LMIN 184 ++ Sbjct: 300 SLMK 303 >gi|328884728|emb|CCA57967.1| putative integral membrane protein [Streptomyces venezuelae ATCC 10712] Length = 315 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 85/187 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR KF++ P I+ + +AGL + A+++ + P E +V + Sbjct: 129 LGWQRQKRIEKFINQLPELSRILANATQAGLALRMALSLAADEMEAPAGDELEKVAQQLA 188 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G SL +++ + +P +E+ T + + ++ GG + +L NL+ L +RK + +V+ Sbjct: 189 VGTSLDDALGELAERLPSRELVVLVTTLVLANRAGGTVVSSLRNLTETLEERKETRREVR 248 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +A+ + + L+ PG ++ + G + A ++G + +R Sbjct: 249 TQLSQVSMTAYSVPVIGVGSLLLIDNMQPGALDRMTGSGLGQFAVVAAFGLYVVGFIAIR 308 Query: 181 LMINFDV 187 DV Sbjct: 309 RFSKIDV 315 >gi|312882148|ref|ZP_07741897.1| Flp pilus assembly protein TadB [Vibrio caribbenthicus ATCC BAA-2122] gi|309370194|gb|EFP97697.1| Flp pilus assembly protein TadB [Vibrio caribbenthicus ATCC BAA-2122] Length = 300 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 50/183 (27%), Positives = 93/183 (50%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+ KR F + FP+AL+I++ +V AG + A+ + + + EF+R+ + L Sbjct: 114 RSLVTKRRRDFENTFPDALNILMSAVSAGDSLMQAIIYVGDVMDNAIGREFKRMGDRFKL 173 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S + R + P E FF+ I GG L LA L R+L + + ++ K A Sbjct: 174 GESPDVILHRACKTYPYPEFLFFTVTIRANIARGGQLKGVLARLIRVLVESRTLEKKKMA 233 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ EA+ SA I+ +P L+ + +P ++ +++DP G LL +G+ ++ L Sbjct: 234 MTSEARISAKIVAMIPVIFMLLLNYINPENIDFILHDPSGRGLLYYVVGSEFLGLFIVWL 293 Query: 182 MIN 184 ++ Sbjct: 294 LVK 296 >gi|212635450|ref|YP_002311975.1| Tight adherence TadB-like transmembrane protein [Shewanella piezotolerans WP3] gi|212556934|gb|ACJ29388.1| Tight adherence TadB-like transmembrane protein, putative [Shewanella piezotolerans WP3] Length = 325 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 58/181 (32%), Positives = 98/181 (54%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR K + FP+ALD++ R+++AG SDAV ++ + P+ EF + + Sbjct: 145 KRMDKIEESFPDALDVLRRALQAGYSFSDAVKLVTEEMEGPLAKEFSLMFANINYSKDTK 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + +P F++ + VQ + GGNL+E + NLSR++R R + +V+ LS E Sbjct: 205 RALLSFIERVPSVSAMAFASAVMVQKETGGNLAENIQNLSRVIRLRFTFRRRVRTLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWI+ LPF + ++Y +PGY+ L GH LL A M +G + + +I D Sbjct: 265 RLSAWILILLPFVLFAVIYIQTPGYVGELTGTEEGHKLLMWGAIGMFVGGLWISKIIRID 324 Query: 187 V 187 + Sbjct: 325 M 325 >gi|83719955|ref|YP_442976.1| pilus assembly protein [Burkholderia thailandensis E264] gi|257139200|ref|ZP_05587462.1| pilus assembly protein, putative [Burkholderia thailandensis E264] gi|83653780|gb|ABC37843.1| pilus assembly protein, putative [Burkholderia thailandensis E264] Length = 330 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 61/185 (32%), Positives = 115/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 143 RMLIARFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 202 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + + + + L + SFF +++Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 203 GADMKDVLEQQAARLQLADFSFFGVCLTLQRETGGNLTETLENLSGIIRARRDIRMKTRA 262 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+ +L + GH +L +A + IG+ ++R Sbjct: 263 LTAEGRIASKIIAAVPFAIAAFLFVVNRPYIELLFHTRAGHKMLILAVVLLTIGLAMIRK 322 Query: 182 MINFD 186 + N D Sbjct: 323 IANLD 327 >gi|90412172|ref|ZP_01220178.1| hypothetical Flp pilus assembly protein TadB [Photobacterium profundum 3TCK] gi|90326896|gb|EAS43281.1| hypothetical Flp pilus assembly protein TadB [Photobacterium profundum 3TCK] Length = 302 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 55/182 (30%), Positives = 90/182 (49%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 LIKKR +F FP+AL+I++ +V AG V +++ + + V F+ + E LG Sbjct: 118 WLIKKRQNEFEQAFPDALNIMMSAVTAGESVMQSISYVGKTLDNKVGDLFQDMGERLKLG 177 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + R ++ P FF I GG L +A L R+L D + + K A+ Sbjct: 178 EPPEQVFKRASKHYPYPTFLFFVVTIRANMSRGGQLKAVMARLIRVLVDSRTLDKKKSAM 237 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ SA I+ SLPF ++ F SP +N ++ DP G +L +G+ ++ L+ Sbjct: 238 TSEARLSAKIVASLPFIFMVILSFISPQNLNYVLTDPNGRYVLYYVVGSETLGLFIIWLL 297 Query: 183 IN 184 I Sbjct: 298 IR 299 >gi|294631143|ref|ZP_06709703.1| integral membrane protein [Streptomyces sp. e14] gi|292834476|gb|EFF92825.1| integral membrane protein [Streptomyces sp. e14] Length = 313 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 85/187 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR KF++ P I+ + +AGL + AV + + P E +V Sbjct: 127 LSWQRQKRIEKFINQLPELARILANATQAGLALRTAVGMAAEELEAPAGEELGKVSHQLA 186 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S+ +++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ Sbjct: 187 LGASMDDALGELADRLPSRELVVLVTTLVLANRAGGQVVSALRNLTETLEERKETRREVR 246 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +++ + L L+ G + + P G + VA A +G +++R Sbjct: 247 TQLSQVNMTSYAVPVLGIGALFLMNGVKDGALERMTGSPIGQGAVIVAFALYAVGFVLIR 306 Query: 181 LMINFDV 187 + DV Sbjct: 307 RLSRIDV 313 >gi|70734196|ref|YP_257836.1| hypothetical protein PFL_0694 [Pseudomonas fluorescens Pf-5] gi|68348495|gb|AAY96101.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5] Length = 293 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 101/184 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R + ++ P LD VRS+++G ++DAV + S+DP++S R+ Sbjct: 108 IAWLYQRRLKRMIEQLPALLDHSVRSLKSGRTLADAVLGAIEASNDPLKSAMGRIQRNVQ 167 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG++L +++S + E+ F+ + V + GGN SE L NL +++R+R+ ++ Sbjct: 168 LGVNLPDAVSDFAEFYEQDELRMFALGLKVNHRYGGNASELLENLIKLIREREQGARQLS 227 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + +AW++G+LP + T+PGYM + +D G +L A + G + + Sbjct: 228 AMTGETRMTAWVLGTLPLLLVGYFMLTNPGYMLGMWHDSAGQKMLITAVCLQIFGCLALW 287 Query: 181 LMIN 184 M+ Sbjct: 288 RMLR 291 >gi|167815891|ref|ZP_02447571.1| type II secretion system protein [Burkholderia pseudomallei 91] Length = 212 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 116/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 25 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 84 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 85 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 144 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R Sbjct: 145 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 204 Query: 182 MINFD 186 + N D Sbjct: 205 IANLD 209 >gi|152994351|ref|YP_001339186.1| type II secretion system protein [Marinomonas sp. MWYL1] gi|150835275|gb|ABR69251.1| type II secretion system protein [Marinomonas sp. MWYL1] Length = 329 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 57/187 (30%), Positives = 100/187 (53%), Gaps = 4/187 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 ++ + K +F + P A+D IVR RAG+PVS+A ++ P+ EF V + L Sbjct: 143 RNAMAKHLKEFKQNLPQAIDSIVRIARAGVPVSNAFNLVAENLPGPLAKEFSLVDKWLRL 202 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L +++ + +PL E FF ++ + + GG LS+ L L+ LR+R+ + K++A Sbjct: 203 GVPLRQAMQDSAKRVPLNEYRFFVVILIINQEAGGRLSDTLERLAHTLRERQELALKIRA 262 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI----M 177 + E +ASA I+ SL +Y SP L+ND G+ +L A +L+G+ Sbjct: 263 KTSEVRASAVIVASLAPLSLAYMYLNSPKDFQFLLNDSTGNNVLFYAFGSVLLGLSITHF 322 Query: 178 VMRLMIN 184 +++ +I Sbjct: 323 MIKRVIR 329 >gi|126725974|ref|ZP_01741816.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium HTCC2150] gi|126705178|gb|EBA04269.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium HTCC2150] Length = 323 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 102/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR + P+A++++VRS++ G P S A+A + +S DP+ +EF + + Sbjct: 137 VNGKAKKRLGMMEEQLPDAIELMVRSLKVGHPFSSAIAAVAAESPDPIGTEFGVIADEAA 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +++S+ M + +Q++ F + V+ +Q++ GGNL+E L L+ ++R R + KV Sbjct: 197 YGGEITDSLQEMAERLDMQDLRFLAVVVGIQAKSGGNLAEILEGLASVIRSRFRLFRKVA 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EAK S + + + P + T P + + ++ + V A ++I I+ MR Sbjct: 257 AITAEAKFSGFFLSAFPILALIGMLITKPDFYDEVMETSMFVPAVIVVAFLLIINIVFMR 316 Query: 181 LMINFDV 187 +M N V Sbjct: 317 VMTNIKV 323 >gi|294676063|ref|YP_003576678.1| type II secretion system protein [Rhodobacter capsulatus SB 1003] gi|294474883|gb|ADE84271.1| type II secretion system protein [Rhodobacter capsulatus SB 1003] Length = 322 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 45/187 (24%), Positives = 97/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR D P+A++++VRS+R G P++ A+ + + DP+ +EF + + Sbjct: 136 VNGKAGKRLKLAEDQLPDAVELMVRSLRVGHPLASAIQAVAKEIPDPLGTEFGIIADEAA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++ +S+ + + +Q++ F + +S+Q GGNL+E L L++++R R + +V+ Sbjct: 196 YGRNVVDSLRDLAERLDMQDLRFLAVAVSIQQTSGGNLAEVLEGLAKVIRSRFRLFRRVR 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E K S + + P V ++ +P Y + + + P + A + ++ M+ Sbjct: 256 AITAEPKWSGVFLSAFPVAVLVVIQVVAPTYYDNVKDSPSFVPAALIVFALLGANVLFMK 315 Query: 181 LMINFDV 187 +M V Sbjct: 316 IMTTIKV 322 >gi|29829794|ref|NP_824428.1| hypothetical protein SAV_3252 [Streptomyces avermitilis MA-4680] gi|29606903|dbj|BAC70963.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 313 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 89/187 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR F+ P+ ++ + AGL + A+A+ + P E RV + Sbjct: 127 LNWQRQKRIEAFIGQLPDVARLLANATAAGLALRTALAMAAEELEAPAGEELARVADQLT 186 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S+ +++ + +P +E+ T + + ++ GG++ +L NL++ L DRK + +V+ Sbjct: 187 LGRSVDDALDELAERLPSRELIVLVTTLVLANKAGGSVVSSLRNLTQTLEDRKETRREVR 246 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + E A+A+ + L L+ ++ G + + G L+ ++ +G V+R Sbjct: 247 TMLSEVNATAFTVPLLGLGSLLLINSSNEGALARVTGSSLGQGLILLSLGLYTVGFFVIR 306 Query: 181 LMINFDV 187 + +V Sbjct: 307 RLGKIEV 313 >gi|89053484|ref|YP_508935.1| type II secretion system protein [Jannaschia sp. CCS1] gi|88863033|gb|ABD53910.1| type II secretion system protein [Jannaschia sp. CCS1] Length = 322 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 95/187 (50%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR + + P+A++++VRS+R G P ++ + + SDP+ SE + + Sbjct: 136 VSRTAKKRLSLLEEQLPDAVELMVRSLRVGHPFVASINTVSREMSDPIASELGVIADEAA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++ESI M + +Q++ F + + +Q GGNL+E LA L+ ++R R + KV+ Sbjct: 196 YGRDVAESIRAMADRLDIQDLRFLAVAVGIQQTSGGNLAEILAGLADVMRARFKLFRKVR 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ EA+ S + P + P Y + +I+ P A + + ++MR Sbjct: 256 VITAEARGSGNFLSVFPILALVGINVMQPDYYSEVIDTPVFIPAAAGVAVALGLNWVIMR 315 Query: 181 LMINFDV 187 +++N V Sbjct: 316 VLVNIKV 322 >gi|302553854|ref|ZP_07306196.1| integral membrane protein [Streptomyces viridochromogenes DSM 40736] gi|302471472|gb|EFL34565.1| integral membrane protein [Streptomyces viridochromogenes DSM 40736] Length = 314 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 86/187 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR KF++ P I+ + +AGL + A+ + + P E +V + Sbjct: 128 LNWQRQKRIEKFINQLPEMARILANATQAGLALRTAIGMAAEEMEAPAGEELGKVSDQLA 187 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S+ +++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ Sbjct: 188 VGASMDDALGELADRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVR 247 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +++ + L L+ G ++ + G + +A + +G +++R Sbjct: 248 TQLSQVTMTSYAVPVLGVGSLFLMNGVKDGALDRMTGSAFGQAAVIIAFSLYAVGFVLIR 307 Query: 181 LMINFDV 187 + DV Sbjct: 308 RLSRIDV 314 >gi|119773847|ref|YP_926587.1| putative type II secretion system protein F [Shewanella amazonensis SB2B] gi|119766347|gb|ABL98917.1| putative type II secretion system protein F [Shewanella amazonensis SB2B] Length = 283 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 47/186 (25%), Positives = 99/186 (53%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 ++L ++R +F+ P+AL++I S++AG V++A+ + + P++ EF+ + Q L Sbjct: 98 RYLHQRRRRRFVHQLPDALNMIAASMQAGANVTNAIEFMADEMDAPIKQEFQLFLREQRL 157 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ + ++ + + +P E + + +GGNL+E L LS LR + M+ K+ + Sbjct: 158 GVEFNTALDNVYKRIPESEFQLVVAGMQISRDVGGNLAEVLVRLSETLRKKIEMEGKITS 217 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ + K ++ LP + +Y P M ++ +P G ++ V++ + G M ++ Sbjct: 218 LTSQGKMQGIVMTLLPVAIGFTLYHMEPVSMGRILTEPVGWAVIAVSSLLLFGGYMTIKK 277 Query: 182 MINFDV 187 +I DV Sbjct: 278 IITIDV 283 >gi|307294431|ref|ZP_07574275.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] gi|306880582|gb|EFN11799.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] Length = 333 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 57/187 (30%), Positives = 102/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R K + FP ALD VR +RAG P++ A+ ++ + DP+ SEF V++ Sbjct: 147 LTRLAQRRRKKMEEQFPVALDTFVRGLRAGHPIAAALDLLTKEMRDPIGSEFGIVVDEVT 206 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +++ RM + E+ F +SVQS+ GGNL+E L NLS ++R+R ++ KV+ Sbjct: 207 YGADLRDALQRMAERWDMNEMHMFVISLSVQSETGGNLAEILENLSAVIRERASLFMKVR 266 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + +A ++ +LP ++ +P + + + + +IG + +R Sbjct: 267 ALSSEGRMTAVMLTALPILAFVGLFLVNPAFYLDVAQEKMFIVGFVGLITLYIIGFVTIR 326 Query: 181 LMINFDV 187 M++ V Sbjct: 327 RMVDLKV 333 >gi|115361040|ref|YP_778177.1| type II secretion system protein [Burkholderia ambifaria AMMD] gi|115286368|gb|ABI91843.1| type II secretion system protein [Burkholderia ambifaria AMMD] Length = 325 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 52/178 (29%), Positives = 101/178 (56%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +R K P+ D+I R++R+G S A+ ++ + DP+ EFR + + G+S Sbjct: 143 RNRRMLKLERQLPDICDMIARALRSGHSFSSALGMVGEEFPDPMGGEFRITFDEINYGVS 202 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +++ + +P ++ +F + +Q + GGNL+E L +++ ++R+R + KV+ LS Sbjct: 203 LHDALVNLATRVPAHDLRYFVIAVLIQRETGGNLAELLDSIASLVRERFKLFDKVRVLSA 262 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 E + SAWI+G LPF + ++ + +++VL DP G ++GV M G++ +R + Sbjct: 263 EGRLSAWILGLLPFGTAAMMAMMNREFLSVLWQDPAGIKMVGVMLGSMAFGLLWIRRI 320 >gi|318057611|ref|ZP_07976334.1| hypothetical protein SSA3_06719 [Streptomyces sp. SA3_actG] gi|318080453|ref|ZP_07987785.1| hypothetical protein SSA3_28141 [Streptomyces sp. SA3_actF] gi|333024717|ref|ZP_08452781.1| putative integral membrane protein [Streptomyces sp. Tu6071] gi|332744569|gb|EGJ75010.1| putative integral membrane protein [Streptomyces sp. Tu6071] Length = 314 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 88/187 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR F+ P+ ++ + AGL + A+A+ + +P E V + Sbjct: 128 LNWQRAKRIEAFISQLPDVARLLANATAAGLALRTALAMAAEELENPAGEELSNVADQLA 187 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S+ E++ + R +P +E+ T + + ++ GG + +L NL+ L +RK + +V+ Sbjct: 188 LGRSIDEALDELSRRLPSRELVVLVTTLVLSNKAGGTVVGSLRNLTVTLEERKETRREVR 247 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + E A+A+ + +L LV + G ++ + G L+ ++ +G V+R Sbjct: 248 TMLSEVNATAFTVPALGLGSLLLVNAQNDGALHRVTGSGLGQFLILLSLGLYTVGFFVIR 307 Query: 181 LMINFDV 187 + DV Sbjct: 308 RLGRIDV 314 >gi|320008844|gb|ADW03694.1| Type II secretion system F domain protein [Streptomyces flavogriseus ATCC 33331] Length = 311 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 86/187 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KRT F+ P ++ + AGL + ++A+ + P E R V + Sbjct: 125 LNWHRTKRTEAFISQLPEISRVLANATHAGLSLRTSIAMAADELESPAGDELRVVADQLG 184 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G +L +++ + +P +E+ + + + ++ GG + +L NL+ L +RK + +V+ Sbjct: 185 VGRTLDDALGELAERLPSRELVVLVSTLILSNRAGGQVVSSLRNLTVTLEERKETRREVR 244 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + A+A+ + ++ LV PG ++ + G + + V+ +G + +R Sbjct: 245 TQLSQINATAYAVPAIGIGAMLLVNSILPGALDRMTGSVVGQIAVIVSLGLYALGFVAIR 304 Query: 181 LMINFDV 187 + D+ Sbjct: 305 RVSKIDI 311 >gi|221633001|ref|YP_002522226.1| type II secretion system protein F domain [Thermomicrobium roseum DSM 5159] gi|221156079|gb|ACM05206.1| Bacterial type II secretion system protein F domain [Thermomicrobium roseum DSM 5159] Length = 323 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 45/185 (24%), Positives = 102/185 (55%), Gaps = 1/185 (0%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + R +F++ + + ++ S+RAG + + ++ +S+ P+ EFRRV+ LG Sbjct: 140 WRGRHRLQRFVNQLGDTIGLMANSLRAGYSLLQTMDLVARESAPPMSEEFRRVVREVGLG 199 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L +++ ++ +P +++ T I++ ++GGNL++ L + +R+R +K +++ L Sbjct: 200 VPLQDALDHLLERIPSEDLDLLVTAIAINHEVGGNLAQILEIIGETIRERVRIKGEIRVL 259 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + S +II LP ++ L++ +P Y+ L+ P + A M++G +VMR + Sbjct: 260 TAQQSLSGYIISLLPVGLAILIFLLNPSYLLSLLRWPW-ICMPIGAVICMVLGFVVMRRI 318 Query: 183 INFDV 187 + +V Sbjct: 319 VAIEV 323 >gi|170700845|ref|ZP_02891834.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] gi|170134253|gb|EDT02592.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] Length = 325 Score = 105 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 51/178 (28%), Positives = 101/178 (56%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +R K P+ D+I R++R+G S A+ ++ + +P+ EFR + + G+S Sbjct: 143 RNRRMLKLERQLPDICDMIARALRSGHSFSSALGMVGEEFPEPMGGEFRITFDEINYGVS 202 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +++ + +P ++ +F + +Q + GGNL+E L +++ ++R+R + KV+ LS Sbjct: 203 LHDALVNLATRVPAHDLRYFVIAVLIQRETGGNLAELLDSIASLVRERFKLFDKVRVLSA 262 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 E + SAWI+G LPF + ++ + +++VL DP G ++GV M G++ +R + Sbjct: 263 EGRLSAWILGLLPFGTAAMMAMVNREFLSVLWQDPAGIKMVGVMLGSMAFGLLWIRRI 320 >gi|220913385|ref|YP_002488694.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] gi|219860263|gb|ACL40605.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] Length = 316 Score = 105 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 90/184 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L +R F P+ L + +RAG + A+ ++ P+ E R++ Sbjct: 130 LNMLTARRRKTFDAQVPDTLQMFSGGLRAGHSLLRAIDAAAQENQGPMAEELSRIVNETR 189 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G L ES++ + R ++ + S I + ++GG+L+E L ++ +RDR +K +V+ Sbjct: 190 IGRDLGESMADVSRRTASEDFYWISQAIEIHREVGGDLAEVLDHVGETIRDRNQVKGQVR 249 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + SA ++ +LP + + +P Y V G ++L A A + +G + + Sbjct: 250 ALSAEGRISAMVLMALPILMFIGLVTFNPTYARVFTTTFIGFVMLAAAVALLAVGGLWLS 309 Query: 181 LMIN 184 +I Sbjct: 310 RIIK 313 >gi|167894382|ref|ZP_02481784.1| type II secretion system protein [Burkholderia pseudomallei 7894] Length = 205 Score = 105 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 116/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 18 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 77 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 78 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 137 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R Sbjct: 138 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 197 Query: 182 MINFD 186 + N D Sbjct: 198 IANLD 202 >gi|167845810|ref|ZP_02471318.1| type II secretion system protein [Burkholderia pseudomallei B7210] Length = 202 Score = 105 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 116/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 15 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 74 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 75 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 134 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R Sbjct: 135 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 194 Query: 182 MINFD 186 + N D Sbjct: 195 IANLD 199 >gi|167824264|ref|ZP_02455735.1| type II secretion system protein [Burkholderia pseudomallei 9] Length = 204 Score = 105 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 116/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 17 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 76 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 77 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 136 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R Sbjct: 137 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 196 Query: 182 MINFD 186 + N D Sbjct: 197 IANLD 201 >gi|167738670|ref|ZP_02411444.1| type II secretion system protein [Burkholderia pseudomallei 14] Length = 200 Score = 105 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 116/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 13 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 72 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 73 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 132 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R Sbjct: 133 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 192 Query: 182 MINFD 186 + N D Sbjct: 193 IANLD 197 >gi|237653360|ref|YP_002889674.1| type II secretion system protein [Thauera sp. MZ1T] gi|237624607|gb|ACR01297.1| type II secretion system protein [Thauera sp. MZ1T] Length = 289 Score = 105 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 94/184 (51%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L ++R P+AL +I +RAG+ ++ A+ +V + P+ EF + LG+ Sbjct: 106 LRQRRLDLIEQQLPDALQVIAGGLRAGVSMTVALQQLVREGRPPIAQEFDLTLREHRLGI 165 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L E++ + + + ++ + + ++ GG+L+EAL + +R + M+ K+ AL+ Sbjct: 166 PLDEALDHLAARVRMPSLTLVIAAMRIANETGGSLAEALERAALTVRSQLAMEGKIGALT 225 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + K A ++G LP + ++ P M L + P G L V A ++G++++R ++ Sbjct: 226 AQGKLQAVVVGMLPLALLLVLDRMEPEAMGFLWHSPPGWATLAVIATLEVLGVLLIRRIV 285 Query: 184 NFDV 187 DV Sbjct: 286 AIDV 289 >gi|254393102|ref|ZP_05008262.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064] gi|294814749|ref|ZP_06773392.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064] gi|326443128|ref|ZP_08217862.1| hypothetical protein SclaA2_18783 [Streptomyces clavuligerus ATCC 27064] gi|197706749|gb|EDY52561.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064] gi|294327348|gb|EFG08991.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064] Length = 313 Score = 105 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 83/187 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ KRT F+ P ++ + +AGL + A+A+ + DP E V + Sbjct: 127 LEWQRVKRTEAFIAQLPELTRVLANATQAGLSLRTALAMAAEELDDPAGHELGIVADQLA 186 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G SL +++ + +P +E+ T + + ++ GG + +L NL++ L +RK + +V Sbjct: 187 VGQSLDDALGTLAERLPSRELIVLVTTLILANRAGGQVVTSLRNLTQSLEERKETRREVT 246 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + K +A + L ++ +PG ++ + G A +G ++R Sbjct: 247 TTLSQIKVTALAVPLLGLGFLLMINGMTPGALDRMTGSVVGQGATLAAFGLYGLGAFLIR 306 Query: 181 LMINFDV 187 + V Sbjct: 307 RLSRIQV 313 >gi|328952511|ref|YP_004369845.1| Type II secretion system F domain protein [Desulfobacca acetoxidans DSM 11109] gi|328452835|gb|AEB08664.1| Type II secretion system F domain protein [Desulfobacca acetoxidans DSM 11109] Length = 317 Score = 105 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 1/185 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +R K + P+A+D IVRS++ G V A + P+ ++FR + E +GL Sbjct: 133 RRARREEKLVAQLPDAIDTIVRSLKVGQSVDAATLEVARGFPPPIGADFRAINEEMAMGL 192 Query: 64 SLSESISRMVRYMPL-QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 I R P +V +Q + GG L++ LA L+ +R R + + +V+A Sbjct: 193 PFETVIKNFQRRYPRLPDVRILCATFVIQRETGGKLTDILAGLASTIRARLHFQRRVRAS 252 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + +A+I+G LP + + + P YM V + P G LL V G +VMR M Sbjct: 253 TAEGRTTAFILGILPLGFAAVTWLLRPEYMRVFRDHPLGRKLLVVVILMEAAGFLVMRAM 312 Query: 183 INFDV 187 + V Sbjct: 313 LRVKV 317 >gi|72162674|ref|YP_290331.1| integral membrane protein [Thermobifida fusca YX] gi|71916406|gb|AAZ56308.1| putative integral membrane protein [Thermobifida fusca YX] Length = 310 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 47/186 (25%), Positives = 89/186 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR F P ++ + +AGL + A+ + + +DP +E R V E+ Sbjct: 124 LNRQEEKRREAFTAQLPELARVLSNATQAGLALPTAIDMAADELADPAGAELRHVAESIK 183 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G E+++ + + MP +E+ + + V ++ GG L AL N+S L +RK + +V+ Sbjct: 184 VGQPFEEALNDLRKRMPSREIGVLISTLLVSARSGGALVTALRNISETLENRKETRREVR 243 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + E ++AW + + L+ PG + + G ++LG A IG +V+R Sbjct: 244 TILSETTSTAWTLLLMGVGSLFLLNALMPGTVARMTESFAGLVVLGAALTLFTIGFVVIR 303 Query: 181 LMINFD 186 M D Sbjct: 304 RMSRID 309 >gi|167719678|ref|ZP_02402914.1| type II secretion system protein [Burkholderia pseudomallei DM98] Length = 205 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 116/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 18 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 77 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 78 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 137 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R Sbjct: 138 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 197 Query: 182 MINFD 186 + N D Sbjct: 198 IANLD 202 >gi|116255774|ref|YP_771607.1| putative transmembrane pilus component protein [Rhizobium leguminosarum bv. viciae 3841] gi|115260422|emb|CAK03526.1| putative transmembrane pilus component protein [Rhizobium leguminosarum bv. viciae 3841] Length = 318 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 88/187 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ +++R + P A+D IV +VR G P++ AV + P EF R+ Q Sbjct: 132 IRYYLQRRWLQIESQLPYAVDQIVSAVRTGKPLAIAVNAVADTGQMPASREFERIAREQK 191 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L E++ R R +P + + ++ GG++SE L +S+ ++ + K+ Sbjct: 192 LGIGLVEALDRHGRNVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKIT 251 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 S +A+ + ++ + +++F P ++ + + G ++ V A G MR Sbjct: 252 TSSSQARMNFRVVNGGALFMILMIFFGQPELIDKVFGNAIGIVIAIVGAILYATGFFWMR 311 Query: 181 LMINFDV 187 M+ V Sbjct: 312 SMMKVSV 318 >gi|78062902|ref|YP_372810.1| type II secretion system protein [Burkholderia sp. 383] gi|77970787|gb|ABB12166.1| type II secretion system protein [Burkholderia sp. 383] Length = 325 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 56/185 (30%), Positives = 119/185 (64%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+++ +FL+ FP+A+D+IVR+VRAG+PV+ A++++ +++PVR+ FR + ++ + Sbjct: 138 RALVERFRIRFLEAFPDAIDVIVRAVRAGIPVTQAISMVGDGAAEPVRATFRSMGDSLRV 197 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + +++ + + + SFF+ + +Q + GG+L E L LS I+R R++++ K +A Sbjct: 198 GADLKDVLTQAADRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + + II ++PF + ++ + Y+ +L + G+ +L +AA + +G++V+R Sbjct: 258 LTAEGRITTNIISAVPFVMIGALFLVNRDYVMLLFSTHPGNTMLTIAAGLLTVGLLVIRK 317 Query: 182 MINFD 186 + D Sbjct: 318 ISKLD 322 >gi|319788659|ref|YP_004148134.1| type II secretion system F domain [Pseudoxanthomonas suwonensis 11-1] gi|317467171|gb|ADV28903.1| Type II secretion system F domain [Pseudoxanthomonas suwonensis 11-1] Length = 282 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 48/185 (25%), Positives = 95/185 (51%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L ++R + + P+AL ++ S+RAG+ S A+ V+V P+ E V+ QH+G Sbjct: 98 MLRRRRLDRIQEQLPDALQMLASSLRAGVGFSPAMEVLVQDGQPPLAQELALVLRQQHMG 157 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + E++ + +P+ + F + +++ ++GGNL+E LA L+ LR R M+ KV+AL Sbjct: 158 VRADEALESFSKRVPIVDAELFVSAVNISREVGGNLAETLATLAETLRRRLIMEKKVKAL 217 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + K ++ LP + + M + + G +++GV +G + + + Sbjct: 218 TAQGKLQGIVMALLPVFLVGYLSLMYAETMAPMFHSWHGWLVIGVCVVMEYLGYRMCKKI 277 Query: 183 INFDV 187 + DV Sbjct: 278 MTIDV 282 >gi|182436319|ref|YP_001824038.1| putative integral membrane protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776949|ref|ZP_08236214.1| Type II secretion system F domain protein [Streptomyces cf. griseus XylebKG-1] gi|178464835|dbj|BAG19355.1| putative integral membrane protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657282|gb|EGE42128.1| Type II secretion system F domain protein [Streptomyces cf. griseus XylebKG-1] Length = 314 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 86/187 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KRT +F++ P I+ + +AGL + ++++ + DP E RV Sbjct: 128 LNWQRIKRTERFINQLPELSRILANATQAGLALRTSLSMAAEELEDPAGEELARVARRLA 187 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G L +++S + +P +E+ T + + ++ GG + +L NL+ L +RK + +V+ Sbjct: 188 VGEPLEDALSELTDRLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTETLEERKETRREVK 247 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +A+ + L+ PG ++ + G + + V+ IG +V+R Sbjct: 248 TQLSQVTVTAYAVPLFGIGAMLLMNAVMPGALDRMTGAFFGQVAVVVSIVLYAIGFVVIR 307 Query: 181 LMINFDV 187 DV Sbjct: 308 RFSRIDV 314 >gi|148975966|ref|ZP_01812755.1| hypothetical Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3] gi|145964711|gb|EDK29964.1| hypothetical Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3] Length = 300 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 48/183 (26%), Positives = 94/183 (51%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+ +R F + FP+AL+I++ +V AG + A++ + +P+ EF+ + + L Sbjct: 114 RFLVTRRRRDFENTFPDALNILMSAVTAGDSLMQAISYVGEVMDNPIGREFKLMGDRLKL 173 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S + R + P E FF+ + GG L LA L R+L D + ++ K A Sbjct: 174 GESPEVVLKRSCKNYPYPEFLFFTVTLRANIARGGQLKGVLARLIRVLVDSRTLEKKKMA 233 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ EA+ SA I+ ++P ++ + +P +N ++ D G ++L L G+ ++ L Sbjct: 234 MTSEARISAKIVAAIPLVFMIILNYVNPDNVNYVLYDESGRVVLFYVLGSELFGLFIVWL 293 Query: 182 MIN 184 ++ Sbjct: 294 LVR 296 >gi|209515955|ref|ZP_03264816.1| type II secretion system protein [Burkholderia sp. H160] gi|209503613|gb|EEA03608.1| type II secretion system protein [Burkholderia sp. H160] Length = 325 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 64/185 (34%), Positives = 117/185 (63%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + A+FL FP+ LD+I+R+VRAG+PV A++ ++ +PVRS FR + ++ L Sbjct: 138 RFLIARFRAQFLLVFPDTLDLIIRAVRAGIPVVQAISTAGKEAEEPVRSTFRTMGDSLRL 197 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L E + + V + + + SFF+ + +Q + GGNL E L NLS I+R R++++ K +A Sbjct: 198 GADLKEVLDKAVARLQIADFSFFAVCLLLQRETGGNLGETLENLSGIIRTRRDIRLKTRA 257 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF + +Y + Y+++L + GH +L +AA ++IG+ +++ Sbjct: 258 LTAEGRIASKIISAVPFAIMGFLYVINRPYVDLLFHTRAGHKMLTLAAVLLVIGLSLIQK 317 Query: 182 MINFD 186 + D Sbjct: 318 ISKLD 322 >gi|307245408|ref|ZP_07527496.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254363|ref|ZP_07536201.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258821|ref|ZP_07540553.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853749|gb|EFM85966.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862662|gb|EFM94618.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867172|gb|EFM99028.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 295 Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 80/179 (44%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ F + FP + ++ + +G+ + A+ + P+ EF + + G + Sbjct: 114 RRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFTIIYKRLARGEDV 173 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 P +E FF ++I GG + E ++ L R + D M+ K +A++ E Sbjct: 174 MAVFQDSYSRYPYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAMTSE 233 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A+ SA I+ P + T+P + ++NDP G ++L L+G+ ++ ++ Sbjct: 234 ARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIWWLMR 292 >gi|190149861|ref|YP_001968386.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303251576|ref|ZP_07337750.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307249755|ref|ZP_07531733.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252111|ref|ZP_07534010.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307263185|ref|ZP_07544806.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914992|gb|ACE61244.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649574|gb|EFL79756.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306858170|gb|EFM90248.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860411|gb|EFM92425.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306871547|gb|EFN03270.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 295 Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 80/179 (44%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ F + FP + ++ + +G+ + A+ + P+ EF + + G + Sbjct: 114 RRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFTIIYKRLARGEDV 173 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 P +E FF ++I GG + E ++ L R + D M+ K +A++ E Sbjct: 174 MAVFQDSYSRYPYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAMTSE 233 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A+ SA I+ P + T+P + ++NDP G ++L L+G+ ++ ++ Sbjct: 234 ARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIWWLMR 292 >gi|172065280|ref|YP_001815992.1| type II secretion system protein [Burkholderia ambifaria MC40-6] gi|171997522|gb|ACB68439.1| type II secretion system protein [Burkholderia ambifaria MC40-6] Length = 325 Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 51/178 (28%), Positives = 101/178 (56%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +R K P+ D+I R++R+G S A+ ++ + DP+ EFR + + G+S Sbjct: 143 RNRRMLKLERQLPDICDMIARALRSGHSFSSALGMVGEEFPDPMGGEFRITFDEINYGVS 202 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +++ + +P ++ +F + +Q + GGNL+E L +++ ++R+R + KV+ LS Sbjct: 203 LHDALVNLATRVPAHDLRYFVIAVLIQRETGGNLAELLDSIASLVRERFKLFDKVRVLSA 262 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 E + SAWI+G LPF + ++ + +++VL DP G ++G M +G++ +R + Sbjct: 263 EGRLSAWILGLLPFGTAAMMAMLNREFLSVLWQDPAGIKMVGAMLGSMALGLLWIRRI 320 >gi|46143338|ref|ZP_00204445.1| COG4965: Flp pilus assembly protein TadB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208033|ref|YP_001053258.1| tight adherence protein B [Actinobacillus pleuropneumoniae L20] gi|165975970|ref|YP_001651563.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303252183|ref|ZP_07338351.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247523|ref|ZP_07529568.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|126096825|gb|ABN73653.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876071|gb|ABY69119.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302648966|gb|EFL79154.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856026|gb|EFM88184.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 295 Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 80/179 (44%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ F + FP + ++ + +G+ + A+ + P+ EF + + G + Sbjct: 114 RRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFAIIYKRLARGEDV 173 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 P +E FF ++I GG + E ++ L R + D M+ K +A++ E Sbjct: 174 MAVFQDSYSRYPYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAMTSE 233 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A+ SA I+ P + T+P + ++NDP G ++L L+G+ ++ ++ Sbjct: 234 ARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIWWLMR 292 >gi|282865304|ref|ZP_06274356.1| type II secretion system protein [Streptomyces sp. ACTE] gi|282559777|gb|EFB65327.1| type II secretion system protein [Streptomyces sp. ACTE] Length = 312 Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 88/187 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KRT F++ P ++ + +AGL + A+ + V + +P + E RRV + Sbjct: 126 LNWQRGKRTEAFINQLPELTRVLANATQAGLALRTAIGMAVEELDNPAQEELRRVADRLA 185 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G SL ++++ +V +P +E++ + + + ++ GG + +L NL+ L +RK + +V Sbjct: 186 VGHSLDDALNELVERLPSRELTVLVSTLILSNRAGGTIVSSLRNLTETLEERKETRREVT 245 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L + K +A + L ++ G ++ + G + + VAA G + Sbjct: 246 TLLSQVKVTAVAVPILGLGFLLIINGMRAGALDDMTGSTPGRIAVVVAAGLYAAGFFFIN 305 Query: 181 LMINFDV 187 + + Sbjct: 306 RLTRVRI 312 >gi|116623252|ref|YP_825408.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116226414|gb|ABJ85123.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 321 Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 60/187 (32%), Positives = 111/187 (59%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + R A F D FP+ L+ + RS+RAG S A+ + + SDP+ E RR E Q+ Sbjct: 135 VRRKARMRVAAFEDQFPDCLEFVSRSMRAGHAFSVAIEMAHREFSDPLAGELRRAFEEQN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG L + ++ + +P +V FF + + +Q + GGNL+E L L++++R+R ++A+++ Sbjct: 195 LGQPLEIVLRKLSQRVPSMDVQFFVSAVLLQKRTGGNLAELLDKLAQLMRERFKLRARIR 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S + S I+ ++P V+ +++ +P Y I+DP GH L+ L+G +++R Sbjct: 255 AVSAQGLMSGRILSAIPAGVAVMMFLVNPKYARFFIDDPVGHELMAAGLGLQLLGYLIIR 314 Query: 181 LMINFDV 187 ++ FDV Sbjct: 315 KIVTFDV 321 >gi|307256570|ref|ZP_07538351.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864980|gb|EFM96882.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 295 Score = 104 bits (258), Expect = 7e-21, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 80/179 (44%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ F + FP + ++ + +G+ + A+ + P+ EF + + G + Sbjct: 114 RRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFAIIYKRLARGEDV 173 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 P +E FF ++I GG + E ++ L R + D M+ K +A++ E Sbjct: 174 MAVFQDSYSRYPYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAMTSE 233 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A+ SA I+ P + T+P + ++NDP G ++L L+G+ ++ ++ Sbjct: 234 ARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIWWLMR 292 >gi|332798624|ref|YP_004460123.1| Type II secretion system F domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696359|gb|AEE90816.1| Type II secretion system F domain protein [Tepidanaerobacter sp. Re1] Length = 309 Score = 104 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 47/186 (25%), Positives = 97/186 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K I K+ +F +AL I+ +RAG ++ A+ + DP+ SEFR Sbjct: 123 LKMSINKKQIQFEKQLGDALQILANGLRAGFSLTQAIESLAKDMPDPLGSEFRTASRELL 182 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ + +S++ M +++ + + +Q Q+GGNL+E L N+S+ +RDR +K V+ Sbjct: 183 LGMDIETVLSKIADRMKSEDMRLLTAAVVIQLQVGGNLAEILDNISQTIRDRLAIKRSVR 242 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + + S I+G +P + ++ SP Y ++ GH+++ ++ +G + + Sbjct: 243 TLTAQGRISGQIVGIIPIALLLIISIISPDYTSIFFTTTYGHIMIFISVIMECLGFLAIY 302 Query: 181 LMINFD 186 +++ Sbjct: 303 KIVDIK 308 >gi|253580449|ref|ZP_04857714.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848179|gb|EES76144.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 257 Score = 104 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 89/192 (46%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRV 55 +I++R F +AL + +V+AG V AV V + EFR + Sbjct: 66 NRMIRERRKNLNYQFKDALTSLSVAVQAGYSVESAVKTCVRDLERLYGKGTDIVEEFRYI 125 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 QH+ + L E + ++++ F++V + GG+++ + +SR+L D+ ++ Sbjct: 126 ESQQHISVPLEELFLDLGERSQIEDIENFASVFYTAKRTGGDMNRVIQKVSRMLGDKIDV 185 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K +++A K+ I+ +P + + TSPG+++VL +P G + + Sbjct: 186 KKEIEATLAAKKSEQMIMSLMPVGIILYLQMTSPGFLSVLYGNPFGIAAMSICLVIYAAA 245 Query: 176 IMVMRLMINFDV 187 + R +++ +V Sbjct: 246 YWLGRRIVDIEV 257 >gi|90406746|ref|ZP_01214939.1| MaoC protein [Psychromonas sp. CNPT3] gi|90312199|gb|EAS40291.1| MaoC protein [Psychromonas sp. CNPT3] Length = 308 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 48/184 (26%), Positives = 95/184 (51%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + ++ +F FP ++ I R+V AG+ V A+A + + EF + + +G Sbjct: 123 FIRAQQIKEFEHSFPQVIEQISRAVAAGISVPQAIAQVPEYQQGLLAHEFSLLRDRLEIG 182 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +SL +++ + +P FFS + + + GG L E L +LSR L + +K K+++L Sbjct: 183 ISLKQALQQSTYRLPYSGFHFFSVALILNQENGGQLREVLHSLSRTLHNNHAIKMKIKSL 242 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + +A ++ LP C+ +++YF SP VL + P G+ +L M +G+ ++ ++ Sbjct: 243 TAEPRMTALVLACLPLCLISVMYFKSPASFAVLTDTPTGNDVLMYVIGSMALGLGIINVL 302 Query: 183 INFD 186 Sbjct: 303 TKVR 306 >gi|254506141|ref|ZP_05118285.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16] gi|219550959|gb|EED27940.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16] Length = 306 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 44/184 (23%), Positives = 89/184 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++ +F FP+AL+++ +V +G + ++ + V EF+R+ E Sbjct: 120 LTILESRQQKEFEMAFPDALNMLASAVSSGESLMHSIIFVGKSLEGSVGEEFKRMGERLQ 179 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S + P + FF + Q GG L + + L+R++ D + ++ K Sbjct: 180 MGESPDTVFRKSCNRFPYRSFQFFVITLRANMQRGGQLKDVITRLNRLMFDARAIEKKKY 239 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ EA+ SA I+ ++PF ++ + SP + ++N P+G +L IGI ++ Sbjct: 240 ALTSEARTSAKIVAAIPFFFLFMLQYLSPENYDFVMNHPKGQPILYYMLISEAIGISIVW 299 Query: 181 LMIN 184 ++ Sbjct: 300 GLMR 303 >gi|54309664|ref|YP_130684.1| Flp pilus assembly protein TadB [Photobacterium profundum SS9] gi|46914102|emb|CAG20882.1| hypothetical Flp pilus assembly protein TadB [Photobacterium profundum SS9] Length = 302 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 53/182 (29%), Positives = 90/182 (49%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L+KKR +F FP+AL+I++ +V AG + +++ + + V + F+ + E LG Sbjct: 118 WLLKKRRDEFEQTFPDALNIMMSAVTAGESIMQSISYVGKTLDNKVGAVFQDMGERLKLG 177 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + R ++ P FF I GG L +A L R+L D + + K A+ Sbjct: 178 EPPEQVFKRASKHYPYPTFLFFVVTIRANMSRGGQLKPVMARLIRVLVDSRTLDKKKSAM 237 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ SA I+ SLPF + F SP +N ++ DP G +L +G+ ++ L+ Sbjct: 238 TSEARLSAKIVASLPFIFMVFLSFISPQNLNYVLTDPSGRYVLYYVVGSETLGLFIIWLL 297 Query: 183 IN 184 I Sbjct: 298 IR 299 >gi|312883312|ref|ZP_07743038.1| putative Flp pilus assembly protein TadB [Vibrio caribbenthicus ATCC BAA-2122] gi|309368928|gb|EFP96454.1| putative Flp pilus assembly protein TadB [Vibrio caribbenthicus ATCC BAA-2122] Length = 304 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 91/183 (49%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K++ ++ F+++FP+AL+I+ ++ +G + A + Q ++ V EF+ + E + Sbjct: 119 KYMGGRKKKIFVENFPDALNILSGAISSGQSIVHAFEYVGSQLNNDVGKEFKIISERLLI 178 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + + R P E FF + I + GG L + + ++R++ + ++++ K + Sbjct: 179 GENPDDVLERSGIQYPYLEYFFFISAIRINISRGGQLKDIINKINRLMFESRSLEKKKNS 238 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E++ SA I+G LP ++ F SP + ++ G + IG ++ Sbjct: 239 LTAESRMSAKILGVLPIGFLFVLKFISPEDFDFVMFQEEGRPIFYYLICSEFIGFFIIWR 298 Query: 182 MIN 184 +I Sbjct: 299 IIK 301 >gi|32471257|ref|NP_864250.1| hypothetical protein RB1148 [Rhodopirellula baltica SH 1] gi|32396959|emb|CAD71929.1| conserved hypothetical protein [Rhodopirellula baltica SH 1] Length = 314 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 51/179 (28%), Positives = 89/179 (49%), Gaps = 3/179 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + P +I R+VR+G V+ A+ +I P+R EF E Q LG+ Sbjct: 138 RNQQLSRQLPEVFQLISRAVRSGQTVTSALQMIAEDCPSPIREEFALCYEQQELGMWREL 197 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + ++ + E+ F + VQ++ GG+L E L NLS+++ R ++ +++AL+ E + Sbjct: 198 AFRKLAERNQVMELRIFVVALLVQNRSGGDLVELLDNLSKMVTKRLRLRDRIKALTAEGR 257 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 A ++ LPF + SP Y L+ PR LL IG +++R ++NF+ Sbjct: 258 MQALVLVVLPFVALGAIVLFSPEYAETLLERPR---LLVATGVSQGIGALLIRRIVNFE 313 >gi|86360425|ref|YP_472313.1| hypothetical protein RHE_PE00149 [Rhizobium etli CFN 42] gi|86284527|gb|ABC93586.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 321 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 88/187 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ +++R + P A+D IV +VR G P++ AV + P EF R+ Q Sbjct: 135 IRYFLQRRWLQIESQLPYAVDQIVSAVRTGKPLAVAVNAVADTGQMPASREFERIAREQK 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L E++ R R +P + + ++ GG++SE L +S+ ++ + K+ Sbjct: 195 LGIGLVEALDRHGRTVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKIS 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 S +A+ + ++ + +++F P ++ + + G ++ V A G MR Sbjct: 255 TSSSQARMNFRVVNGGALFMILMIFFGQPELIDKVFGNAIGIVIAIVGAILYATGFFWMR 314 Query: 181 LMINFDV 187 M+ V Sbjct: 315 SMMKVSV 321 >gi|209809174|ref|YP_002264712.1| bacterial type II secretion system protein F [Aliivibrio salmonicida LFI1238] gi|208010736|emb|CAQ81127.1| bacterial type II secretion system protein F [Aliivibrio salmonicida LFI1238] Length = 303 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 87/182 (47%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L K+ +F D FP+AL+++ +V +G + A+ + V EF+R+ E LG Sbjct: 118 WLGKREKNRFEDSFPDALNMLSSAVSSGEGIMHAIIFVGASLDGKVGKEFKRMGEQLQLG 177 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S + P FF + + GG L E + L+R++ ++++ K AL Sbjct: 178 ESPDTVFRKSCARFPYPSFQFFIITLRTSMERGGQLKEIMRRLNRLMFGARSIEKKKYAL 237 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ SA I+ S+PF ++ + SP ++ +P G +L IGI+ + L+ Sbjct: 238 TSEARTSAKIVASIPFIFLFMLQYLSPENYEYVMFNPDGRPILYYVLISESIGILTIWLL 297 Query: 183 IN 184 + Sbjct: 298 MK 299 >gi|323493930|ref|ZP_08099047.1| putative Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546] gi|323311871|gb|EGA65018.1| putative Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546] Length = 304 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 47/182 (25%), Positives = 92/182 (50%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L +++ KF ++FP+AL+I+ ++ +G + A + Q + V +EF+ + E +G Sbjct: 120 KLKQRQEEKFKNNFPDALNILSGAISSGQSIVHAFEYVGKQLDNEVGNEFKFMAERLLIG 179 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + R P E FF++ I + GG L + + ++R++ D + ++ K AL Sbjct: 180 EDPDDVLERSATTFPYLEYFFFASTIRINLSRGGQLKDVINRINRLMFDSRAVEKKKNAL 239 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ASA II LP ++ FTSP + ++ +P G + IG + + + Sbjct: 240 TSEARASAKIIACLPVIFLVILKFTSPENYSFVMFEPGGQPIFYYVLISEFIGFVCIWFI 299 Query: 183 IN 184 + Sbjct: 300 LR 301 >gi|221197784|ref|ZP_03570830.1| type II secretion system protein [Burkholderia multivorans CGD2M] gi|221204658|ref|ZP_03577675.1| type II secretion system protein [Burkholderia multivorans CGD2] gi|221175515|gb|EEE07945.1| type II secretion system protein [Burkholderia multivorans CGD2] gi|221181716|gb|EEE14117.1| type II secretion system protein [Burkholderia multivorans CGD2M] Length = 337 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 88/186 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R K + P+ LD IVR V G V A + + +P+R V Sbjct: 152 LASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTTEEPLRGCLDHVSRMLR 211 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + + +E +V+ + + GG L ++ +RD + + ++ Sbjct: 212 GGVEIDRAMLHIAKIYRTEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELT 271 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SA+++ LP +++ V T+P Y++ + NDP G MLL +A L G + + Sbjct: 272 AMSAETRLSAFVLVMLPIAIASFVIMTNPQYLHGMWNDPSGQMLLVIAFLLQLFGSIWLY 331 Query: 181 LMINFD 186 M Sbjct: 332 RMARLR 337 >gi|221213136|ref|ZP_03586112.1| type II secretion system protein [Burkholderia multivorans CGD1] gi|221167349|gb|EED99819.1| type II secretion system protein [Burkholderia multivorans CGD1] Length = 337 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 88/186 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R K + P+ LD IVR V G V A + + +P+R V Sbjct: 152 LASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTTEEPLRGCLDHVSRMLR 211 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + + +E +V+ + + GG L ++ +RD + + ++ Sbjct: 212 GGVEIDRAMLHIAKIYRTEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELT 271 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SA+++ LP +++ V T+P Y++ + NDP G MLL +A L G + + Sbjct: 272 AMSAETRLSAFVLVMLPIAIASFVIMTNPQYLHGMWNDPSGQMLLVIAFLLQLFGSIWLY 331 Query: 181 LMINFD 186 M Sbjct: 332 RMARLR 337 >gi|227114880|ref|ZP_03828536.1| putative type IV pilus protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 326 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 54/183 (29%), Positives = 98/183 (53%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + ++K + P A+D I RS RAG+PV++ +++ + P+ +EF+ + L Sbjct: 141 RSTLQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTGPLANEFKTIDHWLRL 200 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L + I +P+ E FF ++ + + GG L E L LS LR+R+ ++ KVQ+ Sbjct: 201 GIPLRQVIQASATRVPMSEYRFFVVILIINQEAGGRLGETLERLSATLRERRELQLKVQS 260 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + EA+ASA I+ +L +Y SP + L +DP G +L A + +G+++ + Sbjct: 261 KTSEARASAKIVAALFPGCLAYLYMKSPEDFSFLFSDPVGTTVLIYALCSVSVGMLITHV 320 Query: 182 MIN 184 M+ Sbjct: 321 MVK 323 >gi|167842100|ref|ZP_02468784.1| type II secretion system protein [Burkholderia thailandensis MSMB43] Length = 200 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 115/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 13 RILIARFKQRFLGVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 72 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 73 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 132 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+++L GH +L +AA + IG+ ++R Sbjct: 133 LTAEGRIASKIIAAVPFAIAAFLFVVNRPYIDLLFRTRAGHKMLILAAVLLTIGLAMIRK 192 Query: 182 MINFD 186 + N D Sbjct: 193 IANLD 197 >gi|325111218|ref|YP_004272286.1| type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] gi|324971486|gb|ADY62264.1| Type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] Length = 286 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 86/184 (46%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + +R + L P +D + R+ R G + + ++ + P+ E R + Sbjct: 98 LMTMRSRRQGQILRQLPPMIDELARAARTGRSLDQCLEMVATDTPAPLGDEMERSVRKLQ 157 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G++++E++ + + + +T +SV Q GG+L L L+R LRDR +++ Sbjct: 158 MGVTMNEALYELPERTGVNGLRILATALSVHQQTGGDLVRVLERLARTLRDRGMFLGRLR 217 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ ++A+A ++ LP + F P Y+ L+ G + ++G + + Sbjct: 218 AITAGSRATALLMILLPPAILVFFIFRDPDYLASLMASNWGRFITIAGVILEIVGAIWIL 277 Query: 181 LMIN 184 ++N Sbjct: 278 KILN 281 >gi|167581956|ref|ZP_02374830.1| pilus assembly protein, putative [Burkholderia thailandensis TXDOH] Length = 219 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 61/185 (32%), Positives = 115/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 32 RMLIARFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 91 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + + + + L + SFF +++Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 92 GADMKDVLEQQAARLQLADFSFFGVCLTLQRETGGNLTETLENLSGIIRARRDIRMKTRA 151 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+ +L + GH +L +A + IG+ ++R Sbjct: 152 LTAEGRIASKIIAAVPFAIAAFLFVVNRPYIELLFHTRAGHKMLILAVVLLTIGLAMIRK 211 Query: 182 MINFD 186 + N D Sbjct: 212 IANLD 216 >gi|304311187|ref|YP_003810785.1| type II secretion system protein F [gamma proteobacterium HdN1] gi|301796920|emb|CBL45133.1| type II secretion system protein F [gamma proteobacterium HdN1] Length = 295 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 95/187 (50%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + K R+ KF+ P+AL + ++++GL + ++ +V +P+ EF +V+ Sbjct: 109 LLEMKKNRSDKFVKQMPDALAAMSTALKSGLNLVKSLQQVVRNQPEPLAQEFAQVLVEYR 168 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G L++S + + + EV ++ I + +GGNL+ NL+ LR+ ++ K++ Sbjct: 169 IGTDLNDSFGDLAKRIDRPEVVLMNSAIRINRSVGGNLAATFENLADSLRETSKVEGKIK 228 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ + + ++P V+ + + M +L + G + LG+ +G+ ++ Sbjct: 229 AMTAMGSSQGKLALAVPIVVALVFFQQERAAMEMLFHTKLGWIWLGMMVFSAFLGMTFIK 288 Query: 181 LMINFDV 187 ++N DV Sbjct: 289 KIVNVDV 295 >gi|171921005|gb|ACB59188.1| TadB [Actinobacillus suis ATCC 33415] Length = 295 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 79/179 (44%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ F + FP + ++ + +G+ + A+ + P+ EF + + G Sbjct: 114 RRNKKLFNEKFPEVIQVLNSATSSGISLLQALERCGKDITGPIGEEFSIIYKRLARGEDA 173 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 P +E FF ++I GG + E ++ L R + D M+ K +A++ E Sbjct: 174 MAVFHDSYSRYPYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAMTSE 233 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A+ SA I+ P + T+P + ++NDP G ++L L+G+ ++ ++ Sbjct: 234 ARMSAAIVACFPVAFFLFMKVTTPENFDFVVNDPNGRIILYYVVGSELLGMFIIWWLMR 292 >gi|218708111|ref|YP_002415732.1| putative bacterial type II secretion system protein F [Vibrio splendidus LGP32] gi|218321130|emb|CAV17080.1| putative bacterial type II secretion system,protein F, TadB [Vibrio splendidus LGP32] Length = 306 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 47/182 (25%), Positives = 90/182 (49%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 HL K+ +F + FP+AL+++ S+ AG + + + + V EF+ + E +LG Sbjct: 122 HLQKREKKRFEETFPDALNMLASSLSAGESIGRGIGYVGKKLEGEVGKEFKLMSERLNLG 181 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + + R P FF + Q GG L E ++ L+R + + + ++ K AL Sbjct: 182 EPIDDVFRKSCRRFPYPSFHFFVITLRANMQRGGQLKEVMSRLNRQMFEARAVERKKFAL 241 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ SA I+G+ PF ++ F SP +++ P G +L IG++++ + Sbjct: 242 TSEARISAKIVGATPFFFLFILQFLSPENFEFVMHHPEGRPILYYLITSESIGMLIIWAL 301 Query: 183 IN 184 + Sbjct: 302 MK 303 >gi|77456873|ref|YP_346378.1| type II secretion system protein [Pseudomonas fluorescens Pf0-1] gi|77380876|gb|ABA72389.1| putative Flp pilus assembly protein TadB [Pseudomonas fluorescens Pf0-1] Length = 293 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 53/182 (29%), Positives = 98/182 (53%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 ++R + ++ P LD VRS+++G ++DAV + S DP++ RV LG Sbjct: 110 WRYQRRLRRMIEQLPQLLDHTVRSLKSGRTLADAVLGAIDASEDPLKHAMGRVQRNVQLG 169 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +SL E++ + E+ F+ + V + GGN SE L NL R++R+R +++A+ Sbjct: 170 VSLPEAVGDVAELYEKDELRLFAVGLKVNHRYGGNASELLENLIRMIRERDQASRQLRAM 229 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + +AW++G LP ++ ++P Y+ + ND G M+L A +IG +++ M Sbjct: 230 TGETRITAWVLGLLPVGLAGYFLLSNPKYLIAMWNDHSGQMMLASAFGLQVIGSLLLWRM 289 Query: 183 IN 184 + Sbjct: 290 LR 291 >gi|167620120|ref|ZP_02388751.1| pilus assembly protein, putative [Burkholderia thailandensis Bt4] Length = 217 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 61/185 (32%), Positives = 115/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 30 RMLIARFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 89 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + + + + L + SFF +++Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 90 GADMKDVLEQQAARLQLADFSFFGVCLTLQRETGGNLTETLENLSGIIRARRDIRMKTRA 149 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+ +L + GH +L +A + IG+ ++R Sbjct: 150 LTAEGRIASKIIAAVPFAIAAFLFVVNRPYIELLFHTRAGHKMLILAVVLLTIGLAMIRK 209 Query: 182 MINFD 186 + N D Sbjct: 210 IANLD 214 >gi|327539549|gb|EGF26159.1| type II secretion system protein [Rhodopirellula baltica WH47] Length = 314 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 51/179 (28%), Positives = 89/179 (49%), Gaps = 3/179 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + P +I R+VR+G V+ A+ +I P+R EF E Q LG+ Sbjct: 138 RNQQLSRQLPEVFQLISRAVRSGQTVTSALQMIAEDCPSPIREEFALCYEQQELGMWREL 197 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + ++ + E+ F + VQ++ GG+L E L NLS+++ R ++ +++AL+ E + Sbjct: 198 AFRKLAERNQVMELRIFVVALLVQNRSGGDLVELLDNLSKMVTKRLRLRDRIKALTAEGR 257 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 A ++ LPF + SP Y L+ PR LL IG +++R ++NF+ Sbjct: 258 MQALVLVVLPFVALGAIVLFSPEYAETLLERPR---LLVATGVSQGIGALLIRRIVNFE 313 >gi|261251277|ref|ZP_05943851.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891] gi|260938150|gb|EEX94138.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891] Length = 304 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 93/182 (51%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L +++ KF +FP+AL+I+ ++ +G + A + Q ++ V +EF+ + E +G Sbjct: 120 KLKQRQEEKFKTNFPDALNILSGAISSGQSIVHAFEYVGKQLNNEVGNEFKFMAERLLIG 179 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + R P E FF++ I + GG L + + ++R++ D + ++ K AL Sbjct: 180 EDPDDVLERSATTFPYLEYFFFASTIRINLSRGGQLKDVINRINRLMFDSRAVEKKKNAL 239 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ASA II LP ++ FTSP + ++ +P G + IG + + L+ Sbjct: 240 TSEARASAKIIACLPVIFLVILKFTSPENYSFVMFEPGGQPIFYYVLISEFIGFVCIWLI 299 Query: 183 IN 184 + Sbjct: 300 LR 301 >gi|221066736|ref|ZP_03542841.1| type II secretion system protein [Comamonas testosteroni KF-1] gi|220711759|gb|EED67127.1| type II secretion system protein [Comamonas testosteroni KF-1] Length = 317 Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 79/186 (42%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KR + L P+ LD +VR + G A + V P+ ++ + Sbjct: 132 LWRRLSKRREQLLQQLPSFLDNMVRLITIGNSPHAAFQLAVVNVPAPLGDALQQASASLR 191 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L ++ + R L E + V + ++ GG + L +S +RDR++ + ++ Sbjct: 192 ASPDLGHAMGLLERSWRLSEFGLLAAVFRMSTRYGGRADQVLERVSAYIRDRQSAERELH 251 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + SAWI+ LP V L+ + GY + D G ++ AA +G + Sbjct: 252 ALSAEVRLSAWILALLPVAVGGLIMILNQGYFMTMWQDETGRKMVLGAAGLEALGSFFLY 311 Query: 181 LMINFD 186 + Sbjct: 312 RLARLK 317 >gi|218676253|ref|YP_002395072.1| putative Flp pilus assembly protein TadB [Vibrio splendidus LGP32] gi|218324521|emb|CAV25998.1| putative Flp pilus assembly protein TadB [Vibrio splendidus LGP32] Length = 304 Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 46/183 (25%), Positives = 89/183 (48%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 L +++ F +FP+AL+I+ ++ +G + A + Q + V EF+ + E + Sbjct: 119 SKLKQRQMNSFKTNFPDALNILSGAISSGQSIIHAFEYVGKQLDNDVGKEFKLMAERLLI 178 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + R P E FF++ I + GG L + + ++R++ D + ++ K A Sbjct: 179 GEDPDDVLERSSNTFPYLEYFFFASTIRINLARGGQLKDVINKINRLMFDSRAVEKKKNA 238 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ EA+ASA II LP ++ FTSP + ++ + G + L+G + L Sbjct: 239 LTSEARASAKIIACLPVIFLIILKFTSPENYSFVMFEEAGQPIFYYVLVSELLGFFCIWL 298 Query: 182 MIN 184 ++ Sbjct: 299 ILR 301 >gi|86147188|ref|ZP_01065504.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrio sp. MED222] gi|85835072|gb|EAQ53214.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrio sp. MED222] Length = 306 Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 47/182 (25%), Positives = 90/182 (49%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 HL K+ +F + FP+AL+++ S+ AG + + + + V EF+ + E +LG Sbjct: 122 HLQKREKKRFEETFPDALNMLASSLSAGESIGRGIGYVGKKLEGEVGKEFKLMSERLNLG 181 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + + R P FF + Q GG L E ++ L+R + + + ++ K AL Sbjct: 182 EPIDDVFRKSCRRFPYPSFHFFVITLRANMQRGGQLKEVMSRLNRQMFEARAVERKKFAL 241 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ SA I+G+ PF ++ F SP +++ P G +L IG++++ + Sbjct: 242 TSEARISAKIVGATPFFFLFILQFLSPENFEFVMHHPEGRPILYYLITSESIGMLIIWAL 301 Query: 183 IN 184 + Sbjct: 302 MK 303 >gi|227326305|ref|ZP_03830329.1| putative type IV pilus protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 326 Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 54/183 (29%), Positives = 98/183 (53%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + ++K + P A+D I RS RAG+PV++ +++ + P+ +EF+ + L Sbjct: 141 RSTLQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTGPLANEFKTIDHWLRL 200 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L + I +P+ E FF ++ + + GG L E L LS LR+R+ ++ KVQ+ Sbjct: 201 GIPLRQVIQASATRVPMSEYRFFVVILIINQEAGGRLGETLERLSATLRERRELQLKVQS 260 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + EA+ASA I+ +L +Y SP + L +DP G +L A + +G+++ + Sbjct: 261 KTSEARASAKIVAALFPGCLAYLYMKSPEDFSFLFSDPVGTTVLIYALCSVSVGMLITHV 320 Query: 182 MIN 184 M+ Sbjct: 321 MVK 323 >gi|114321308|ref|YP_742991.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227702|gb|ABI57501.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1] Length = 294 Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 42/184 (22%), Positives = 87/184 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R P ++ I+RS++AG +S AVA + PV +RV Sbjct: 109 VYWRGQRRLRAMEAQLPGFVEHIIRSLQAGRTLSVAVAAATREMRPPVAEVMQRVQREVD 168 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G SLS+++ + + + + + + GG+ + + + +LR R+ + +++ Sbjct: 169 MGASLSDALQGAADIYRVDALQLVAIGVRINLRYGGSAIQLMEQVVTLLRQRERARRELK 228 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + SA ++ LP V +P Y ++ G LLG A A+ ++GI ++ Sbjct: 229 AMTGETRISAGVLAILPVGVGGYTVMMNPDYYATMLESTVGVWLLGGAMAWQVLGIFLIW 288 Query: 181 LMIN 184 M+ Sbjct: 289 RMVK 292 >gi|251789650|ref|YP_003004371.1| type II secretion system protein [Dickeya zeae Ech1591] gi|247538271|gb|ACT06892.1| type II secretion system protein [Dickeya zeae Ech1591] Length = 325 Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 58/183 (31%), Positives = 96/183 (52%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + ++K + + P+A+D I RS RAG+PV++ + S P+ +EFR + L Sbjct: 140 RSTLQKHLHQLRESLPDAIDAITRSCRAGVPVANTFGQVAAHLSGPLANEFRLIDHWLKL 199 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L + I +P+ E FF ++ + + GG L E L LS LR R+ + KVQ+ Sbjct: 200 GVPLRQVIQTSAGRVPMAEYRFFVVILIINQEAGGRLGETLERLSATLRQRRELALKVQS 259 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + EA+ASA I+ +L +Y SP + L NDP G +L A + +G+++ L Sbjct: 260 KTSEARASAKIVAALFPGCLGYMYLKSPEDFDFLFNDPVGSTVLVYALCSVTLGMVITHL 319 Query: 182 MIN 184 M+ Sbjct: 320 MVK 322 >gi|118581109|ref|YP_902359.1| type II secretion system protein [Pelobacter propionicus DSM 2379] gi|118503819|gb|ABL00302.1| type II secretion system protein [Pelobacter propionicus DSM 2379] Length = 321 Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 56/179 (31%), Positives = 105/179 (58%), Gaps = 1/179 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++ KKR + F + P+AL +I RS+RAG ++ AV ++ ++ +P+ FR E Q Sbjct: 134 VSNVRKKRYSSFTEQLPDALTMIARSLRAGHSLTSAVELVGSETPEPLGGLFRAAYEQQK 193 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGL +++++ M++ M ++ FF TVI++ ++ GGNLSE L L+ +R+R ++ +VQ Sbjct: 194 LGLRITDALGGMLQRMDSLDLRFFVTVITIHAESGGNLSEILDKLAATIRERIKLRRQVQ 253 Query: 121 ALSMEAKASAWIIGSLPFCVSTLV-YFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + + S +I+ +LP + Y PGY +V + + +GH + A +IG + Sbjct: 254 VYTAQGRMSGYILVALPIFAFFFLQYVMLPGYEDVFMKETKGHYAIAYAIISQIIGFLF 312 >gi|261867451|ref|YP_003255373.1| TadB [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412783|gb|ACX82154.1| TadB [Aggregatibacter actinomycetemcomitans D11S-1] Length = 295 Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 75/178 (42%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + F FP + I+ + +G + A+ + + EF+ + + +G Sbjct: 115 RNKKTFNAMFPEVIQILNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRIAIGEDPV 174 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 P +E FF T++ GG + E ++ L R++ D M+ K +A++ EA Sbjct: 175 SVFEDSYDRYPYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEA 234 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + SA I+ P + F P + LINDP G +L L G+ ++ ++ Sbjct: 235 RMSAIIVACFPVGFFFFMQFAMPENFDFLINDPTGRYVLYYVFGSELFGMGIIWWLMR 292 >gi|317489755|ref|ZP_07948254.1| hypothetical protein HMPREF1023_01953 [Eggerthella sp. 1_3_56FAA] gi|316911101|gb|EFV32711.1| hypothetical protein HMPREF1023_01953 [Eggerthella sp. 1_3_56FAA] Length = 322 Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 83/187 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + KR + P+AL + +AGL + + + P+ + F R Sbjct: 135 LRTVQDKRRDALREGIPDALRSMAVCFQAGLSLLQTFQQVASEVQGPLGTLFARAAHQLE 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++ + R + E++F + + VQ Q GG++ + L ++ ++ ++ Sbjct: 195 TGEGAGRALEVLRRGSSVAELAFVAVALDVQHQAGGSMKQVLDAARDTVQSEIELRRALR 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +AK SA ++ LPF + + S G+++ P G LL +A GI+ +R Sbjct: 255 VQTAQAKLSARVVSVLPFVLIAVFSLVSEGFLDPFFASPMGMALLAIALGMQAAGIVAVR 314 Query: 181 LMINFDV 187 M+ +V Sbjct: 315 RMLAVEV 321 >gi|209546005|ref|YP_002277895.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538862|gb|ACI58795.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 287 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 88/187 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ +++R + P A+D IV +VR G P++ AV + P EF R+ Q Sbjct: 101 IRYFLQRRWLQIESQLPYAVDQIVSAVRTGKPLAVAVNAVADTGQMPASREFERIAREQK 160 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L E++ R R +P + + ++ GG++SE L +S+ ++ + K+ Sbjct: 161 LGIGLVEALDRHGRTVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKIT 220 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 S +A+ + ++ + +++F P ++ + + G ++ V A G MR Sbjct: 221 TSSSQARMNFRVVNGGALFMILMIFFGQPELIDKVFGNAIGIVIAIVGAILYATGFFWMR 280 Query: 181 LMINFDV 187 M+ V Sbjct: 281 SMMKVSV 287 >gi|293391328|ref|ZP_06635662.1| Flp pilus assembly protein TadB [Aggregatibacter actinomycetemcomitans D7S-1] gi|32452627|gb|AAP43989.1| TadB [Aggregatibacter actinomycetemcomitans] gi|290951862|gb|EFE01981.1| Flp pilus assembly protein TadB [Aggregatibacter actinomycetemcomitans D7S-1] Length = 295 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 75/178 (42%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + F FP + I+ + + + + A+ + + EF+ + +G + Sbjct: 115 RNKKTFNAMFPEVIQILNAAATSSVGLLQALERCGKDLTGQLGQEFKSIHRRLSIGEDPA 174 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 P +E FF T+I GG + E ++ L R++ D M+ K +A++ EA Sbjct: 175 TVFDDSYDRYPYKEFYFFITIIRNNLNKGGQIREVISRLGRVIADSNKMEKKKKAMTSEA 234 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + SA I+ P + F P + L+NDP G +L L G+ ++ ++ Sbjct: 235 RMSAIIVACFPVGFFFFMQFAMPENFDFLVNDPTGRYVLYYVFGSELFGMGIIWWLMR 292 >gi|323700364|ref|ZP_08112276.1| Type II secretion system F domain [Desulfovibrio sp. ND132] gi|323460296|gb|EGB16161.1| Type II secretion system F domain [Desulfovibrio desulfuricans ND132] Length = 324 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 100/175 (57%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +KR +F P ALD++ R+++AG + ++ + P+ EF + ++ + Sbjct: 138 LQGKKRKRMDRFQKQLPEALDLMARALKAGHTFGGGMRMVADEFDGPIGPEFGKTLDEIN 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++S + + ++ FF +++Q + GGNL+E +A ++ ++R+R + K++ Sbjct: 198 YGMDVDRALSNLQSRVDCPDLKFFVVSVNIQRETGGNLAEIIAKIAALVRERFALFGKIR 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 LS E + SA+I+ +LPF ++ ++Y + Y+++L G ++ AA M+IG Sbjct: 258 VLSAEGRVSAYILIALPFLLTGILYVVNSDYISLLWTRELGQNMVWGAAISMIIG 312 >gi|253687072|ref|YP_003016262.1| type II secretion system protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753650|gb|ACT11726.1| type II secretion system protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 326 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 54/183 (29%), Positives = 98/183 (53%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + ++K + P A+D I RS RAG+PV++ +++ + P+ +EF+ + L Sbjct: 141 RSTLQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTGPLANEFKTIDHWLRL 200 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L + I +P+ E FF ++ + + GG L E L LS LR+R+ ++ KVQ+ Sbjct: 201 GIPLRQVIQASATRVPMSEYRFFVVILIINQEAGGRLGETLERLSATLRERRELQLKVQS 260 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + EA+ASA I+ +L +Y SP + L +DP G +L A + +G+++ + Sbjct: 261 KTSEARASAKIVAALFPGCLAYLYMKSPDDFSFLFSDPVGTSVLIYALCSVSVGMLITHV 320 Query: 182 MIN 184 M+ Sbjct: 321 MVK 323 >gi|257790306|ref|YP_003180912.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|325830204|ref|ZP_08163661.1| type II secretion system protein F domain protein [Eggerthella sp. HGA1] gi|257474203|gb|ACV54523.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|325487671|gb|EGC90109.1| type II secretion system protein F domain protein [Eggerthella sp. HGA1] Length = 322 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 83/187 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + KR + P+AL + +AGL + + + P+ + F R Sbjct: 135 LRTVQDKRRDALREGIPDALRSMAVCFQAGLSLLQTFQQVASEVQGPLGTLFARAAHQLE 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++ + R + E++F + + VQ Q GG++ + L ++ ++ ++ Sbjct: 195 TGEGAGRALEVLRRGSSVAELAFVAVALDVQHQAGGSMKQVLDAARDTVQSEIELRRALR 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +AK SA ++ LPF + + S G+++ P G LL +A GI+ +R Sbjct: 255 VQTAQAKLSARVVSVLPFVLIAVFSLVSEGFLDPFFASPMGMALLAIALGMQAAGIVAVR 314 Query: 181 LMINFDV 187 M+ +V Sbjct: 315 RMLAVEV 321 >gi|42521750|ref|NP_967130.1| hypothetical protein Bd0110 [Bdellovibrio bacteriovorus HD100] gi|39574280|emb|CAE77784.1| TadB [Bdellovibrio bacteriovorus HD100] gi|51468908|emb|CAE47781.1| flp pilus assembling protein [Bdellovibrio bacteriovorus] Length = 291 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 96/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + ++R KF+D + L I+ ++AG +++ +V +P+ EF +V+ Sbjct: 105 VRMIYEQRCTKFVDQMVDGLTIMANGIKAGSNPQESMKRVVEIMGNPMSQEFAQVLYQMQ 164 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S +++ + +P +V F T I++ + GGNL+E + ++R+R+ ++ K+Q Sbjct: 165 VGDSFESALNDLGNRIPRPDVQMFVTSINILKETGGNLAETFQTIVLVVRERQKVEKKIQ 224 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + I+ +PF + + P ++ + N G +LL +IG ++++ Sbjct: 225 ALTAQGMMQGIIVTLIPFILMAVFLVIDPAFIKPMFNTTLGLVLLAAMLGLQIIGGVLIK 284 Query: 181 LMINFDV 187 ++ V Sbjct: 285 KLVTIKV 291 >gi|295395664|ref|ZP_06805856.1| possible integral membrane protein [Brevibacterium mcbrellneri ATCC 49030] gi|294971480|gb|EFG47363.1| possible integral membrane protein [Brevibacterium mcbrellneri ATCC 49030] Length = 308 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 83/186 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L +++ AKF P I+ S AGL + A+ V + DP EF + Sbjct: 122 LDVLKERQRAKFFQQLPEFARIMANSTGAGLSIHTALGVAASELPDPASREFSALKRELE 181 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G L ++ RM + +++ + + + + GG+L +L N+S L RK K +V+ Sbjct: 182 IGTPLDIALERMSERISGRDLDVLVSTLVIAQRSGGSLISSLRNMSDTLEFRKETKREVK 241 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L ++ + +++ + L+ + G + L + G + + +A IG++ + Sbjct: 242 TLVSQSSYTGYLVVAFGVGFVLLLASFNDGLLLKLTSTIIGQIAIVIATVCYAIGLVAIN 301 Query: 181 LMINFD 186 ++ Sbjct: 302 RLVKVK 307 >gi|50119738|ref|YP_048905.1| putative type IV pilus protein [Pectobacterium atrosepticum SCRI1043] gi|49610264|emb|CAG73707.1| putative type IV pilus protein [Pectobacterium atrosepticum SCRI1043] Length = 326 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 55/183 (30%), Positives = 97/183 (53%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + ++K + P A+D I RS RAG+PV++ +++ + P+ +EF+ + L Sbjct: 141 RSTLQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLAGPLANEFKTIDHWLKL 200 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L + I +P+ E FF ++ + + GG L E L LS LRDR+ ++ KVQ+ Sbjct: 201 GIPLRQVIQASATRVPMAEYRFFVVILIINQEAGGRLGETLERLSATLRDRRELQLKVQS 260 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + EA+ASA I+ L +Y SP + L +DP G +L A + +G+++ + Sbjct: 261 KTSEARASAKIVAMLFPGCLAYLYMKSPDDFSFLFSDPVGTTVLIYALCSVSVGMLITHV 320 Query: 182 MIN 184 M+ Sbjct: 321 MVK 323 >gi|76663417|emb|CAE47793.1| flp pilus assembling protein [Bdellovibrio bacteriovorus] Length = 291 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 97/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + +KR A+F+D + L I+ ++AG +++ +V +P+ EF +V+ Sbjct: 105 VRMIYEKRCARFVDQMVDGLTIMANGIKAGSNPQESMKRVVEIMGNPMSQEFAQVLYQMQ 164 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S +++ + +P +V F T I++ + GGNL+E + ++R+R+ ++ K+Q Sbjct: 165 VGDSFESALNDLGNRIPRPDVQMFVTSINILKETGGNLAETFQTIVLVVRERQKVEKKIQ 224 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + I+ +PF + + P ++ + + G +LL +IG ++++ Sbjct: 225 ALTAQGLMQGIIVTLIPFILMVVFSIIDPTFIKPMFSTTLGLVLLVAMLGLQIIGGVLIK 284 Query: 181 LMINFDV 187 ++ V Sbjct: 285 KLVTIKV 291 >gi|149200851|ref|ZP_01877826.1| type II secretion system protein [Roseovarius sp. TM1035] gi|149145184|gb|EDM33210.1| type II secretion system protein [Roseovarius sp. TM1035] Length = 322 Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 101/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR A + P+A++++VRS+R G P S A+ ++ + DP+ +EF + + Sbjct: 136 ISMKASKRMALLEEQLPDAIELMVRSLRVGHPFSSAIGIVATEVGDPLATEFGIIADEAA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+ Sbjct: 196 YGRDMGEALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAQVIRARFRLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EAK S + + P + P Y + + P + V F+++ ++VMR Sbjct: 256 AITAEAKWSGKFLSAFPLLALVGIQLLKPDYYDEAMEHPFFIPAVLVVGVFLVLNLIVMR 315 Query: 181 LMINFDV 187 +++ V Sbjct: 316 ALVSIKV 322 >gi|307548791|dbj|BAJ19113.1| TadB [Aggregatibacter actinomycetemcomitans] gi|307548806|dbj|BAJ19127.1| TadB [Aggregatibacter actinomycetemcomitans] Length = 295 Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 75/178 (42%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + F FP + I+ + +G + A+ + + EF+ + + +G Sbjct: 115 RNKKTFNAMFPEVIQILNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRIAIGEDPV 174 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 P +E FF T++ GG + E ++ L R++ D M+ K +A++ EA Sbjct: 175 SVFEDSYDRYPYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEA 234 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + SA I+ P + F P + LINDP G +L L G+ ++ ++ Sbjct: 235 RMSAIIVACFPVGFFFFMQFAMPENFDFLINDPTGRYVLYYVFGSELFGMGIIWWLMR 292 >gi|307133500|dbj|BAJ19012.1| TadB [Aggregatibacter actinomycetemcomitans] Length = 295 Score = 101 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 75/178 (42%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + F FP + I+ + +G + A+ + + EF+ + + +G Sbjct: 115 RNKKTFNAMFPEVIQILNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRIAIGEDPV 174 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 P +E FF T++ GG + E ++ L R++ D M+ K +A++ EA Sbjct: 175 SVFEDSYDRYPYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEA 234 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + SA I+ P + F P + LINDP G +L L G+ ++ ++ Sbjct: 235 RMSAIIVACFPVGFFFFMQFAMPENFDFLINDPTGRYVLYYVFGSELFGMGIIWWLMR 292 >gi|125973853|ref|YP_001037763.1| Flp pilus assembly protein TadB-like protein [Clostridium thermocellum ATCC 27405] gi|256004307|ref|ZP_05429289.1| Flp pilus assembly protein TadB-like protein [Clostridium thermocellum DSM 2360] gi|281418015|ref|ZP_06249035.1| Type II secretion system F domain protein [Clostridium thermocellum JW20] gi|125714078|gb|ABN52570.1| Flp pilus assembly protein TadB-like protein [Clostridium thermocellum ATCC 27405] gi|255991741|gb|EEU01841.1| Flp pilus assembly protein TadB-like protein [Clostridium thermocellum DSM 2360] gi|281409417|gb|EFB39675.1| Type II secretion system F domain protein [Clostridium thermocellum JW20] gi|316939949|gb|ADU73983.1| Type II secretion system F domain [Clostridium thermocellum DSM 1313] Length = 268 Score = 101 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 84/193 (43%), Gaps = 7/193 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFRR 54 K +I+KR ++ F + L I S+ AG V A + + E Sbjct: 76 KDIIEKRKSELNLQFKDLLYSISASLTAGKSVETAFKEALNDLCILYPDPDTYIIREVEY 135 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 ++ + ++ +++ + + L+++ F+ V + GGNL + N + I+ D+ Sbjct: 136 IVRRLEMNETIEDALEDLAKRSHLEDIQNFTDVFKTCKRTGGNLVNVIRNSTNIINDKIE 195 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 +K ++ L K ++ +PF + ++ T+ YM + + G +++ A + I Sbjct: 196 IKEEINTLLAAKKFEQKVLSVMPFIMILILSLTTEDYMAPVFDTIVGRIVMTFAIIIIAI 255 Query: 175 GIMVMRLMINFDV 187 G V + +++ + Sbjct: 256 GYFVSKKIMDIKI 268 >gi|10334986|gb|AAD38173.2|AF152598_2 TadB [Aggregatibacter actinomycetemcomitans] gi|26000716|gb|AAN75212.1| TadB [Aggregatibacter actinomycetemcomitans] Length = 295 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 75/178 (42%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + F FP + I+ + +G + A+ + + EF+ + + +G Sbjct: 115 RNKKTFNAMFPEVIQILNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRIAIGEDPV 174 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 P +E FF T++ GG + E ++ L R++ D M+ K +A++ EA Sbjct: 175 SVFEDSYDRYPYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEA 234 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + SA I+ P + F P + LINDP G +L L G+ ++ ++ Sbjct: 235 RMSAIIVACFPVGFFFFMQFAMPENFDFLINDPTGRYVLYYVFGSELFGMGIIWWLMR 292 >gi|148261009|ref|YP_001235136.1| type II secretion system protein [Acidiphilium cryptum JF-5] gi|326404409|ref|YP_004284491.1| putative type II secretion system protein [Acidiphilium multivorum AIU301] gi|146402690|gb|ABQ31217.1| type II secretion system protein [Acidiphilium cryptum JF-5] gi|325051271|dbj|BAJ81609.1| putative type II secretion system protein [Acidiphilium multivorum AIU301] Length = 319 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 62/178 (34%), Positives = 98/178 (55%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R L+ FP+AL IVR VR G+PV +A+ V+ P EF R+ + +G L Sbjct: 138 RRATALLNQFPDALATIVRCVRVGIPVQEALRVVSQDMPAPTSREFGRIADQVAIGTPLE 197 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ +M L E FF+T IS+Q++ GG L++ L L+ ++R R MKA+ AL+ EA Sbjct: 198 LALRQMADRAHLAEYGFFATAISLQARYGGGLAQTLEGLAEVIRKRVAMKARGYALASEA 257 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + SA I+G +P + + P Y+ VL G+++L A + G +VMR +I Sbjct: 258 RTSALILGIIPLVAALAIEVIQPAYLRVLFVTHGGNIVLAAAVGLLAGGALVMREIIR 315 >gi|170696832|ref|ZP_02887932.1| type II secretion system protein [Burkholderia graminis C4D1M] gi|170138260|gb|EDT06488.1| type II secretion system protein [Burkholderia graminis C4D1M] Length = 356 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 80/186 (43%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 M +R + P+ LD IVR + G V A + + P+R V Sbjct: 170 MSMRASRRRQAIVRQLPSFLDGIVRLITLGNSVPAAFQASLQTTEAPLRECLDHVSRMLR 229 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++S + +E+ V+ + + GG L +S +RD + + ++ Sbjct: 230 SGVEIDRALSHVAVLYGARELELVGAVLRLSVKYGGRADVMLDRMSSFMRDLEQAERELV 289 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + S+W++G LP + + T+P Y + DP G +L +A A L G ++ Sbjct: 290 AMSSETRLSSWVLGMLPVGIGGFLILTNPRYFGSMWFDPGGRQILYLAFALQLTGAYLLY 349 Query: 181 LMINFD 186 + Sbjct: 350 RLARLK 355 >gi|302536566|ref|ZP_07288908.1| integral membrane protein [Streptomyces sp. C] gi|302445461|gb|EFL17277.1| integral membrane protein [Streptomyces sp. C] Length = 312 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 88/187 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +RT +F++ P I+ + +AGL + A+ + + P E RV + Sbjct: 126 LNWQRARRTERFINQLPELARILANATQAGLALRTAIGIAAEELEAPAGEELSRVADRLA 185 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S+ E++ +V +P +E+ + + + ++ GG + +L NL+ L RK + +++ Sbjct: 186 VGHSIEEALGEIVERLPSRELVVLVSTLVLSARAGGAIVGSLRNLTVTLEQRKETRREIR 245 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +A+++ ++ LV PG ++ + G + +A +G +++R Sbjct: 246 TQLSQVTVTAYLVPAIGLGSLLLVDLMMPGALDRMTGAWIGQTAVLIALGLFTLGFVLIR 305 Query: 181 LMINFDV 187 + DV Sbjct: 306 RLSKIDV 312 >gi|52425831|ref|YP_088968.1| MaoC protein [Mannheimia succiniciproducens MBEL55E] gi|52307883|gb|AAU38383.1| MaoC protein [Mannheimia succiniciproducens MBEL55E] Length = 293 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 44/179 (24%), Positives = 79/179 (44%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ +F + FP + I+ + +G + A+ S + EF + + +G Sbjct: 112 RRNRKEFEEMFPEVIQILNSATSSGAGLLQALERCGKDISGQIGEEFTAIHKRLAIGEDA 171 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + P +E FF T+I V GG + E + L R++ D K M+ K A++ E Sbjct: 172 NSVFEDSYSRYPYKEYYFFITIIRVNLDKGGQMREVILRLGRVIADSKKMEKKKSAMTSE 231 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A+ SA I+ S P + F P L+NDP G M+L +G+ ++ ++ Sbjct: 232 ARMSAMIVASFPVAFFIFMKFMMPENFEFLLNDPGGRMILYYVLGSESLGMGIIWWLMR 290 >gi|153811266|ref|ZP_01963934.1| hypothetical protein RUMOBE_01658 [Ruminococcus obeum ATCC 29174] gi|149832764|gb|EDM87848.1| hypothetical protein RUMOBE_01658 [Ruminococcus obeum ATCC 29174] Length = 247 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 88/192 (45%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE---- 57 K LI++R K F +AL+ + +V+AG V +AVA E V E Sbjct: 56 KGLIRERKRKLNYQFKDALNALSVAVQAGYSVENAVAACSRDLERLYPKETDIVKEFHYI 115 Query: 58 --TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + + + E + + +++V F+ V + GG+++ + +R+L D+ ++ Sbjct: 116 ETQLRVSVPVEELLLSLGDRSGIEDVENFAAVFYTAKRTGGDMNRIIQTSARMLGDKIDV 175 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + +++ KA I+ +P + + TSPG+++VL + G + + ++ Sbjct: 176 RKEIETTLAAKKAEQMIMSLMPAGIILYLKLTSPGFLSVLYGNLFGMCAMTLCLGIYVLS 235 Query: 176 IMVMRLMINFDV 187 + R +++ +V Sbjct: 236 YWLGRRIVDIEV 247 >gi|307261000|ref|ZP_07542682.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869302|gb|EFN01097.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 199 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 80/179 (44%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ F + FP + ++ + +G+ + A+ + P+ EF + + G + Sbjct: 18 RRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFTIIYKRLARGEDV 77 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 P +E FF ++I GG + E ++ L R + D M+ K +A++ E Sbjct: 78 MAVFQDSYSRYPYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAMTSE 137 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A+ SA I+ P + T+P + ++NDP G ++L L+G+ ++ ++ Sbjct: 138 ARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIWWLMR 196 >gi|86144314|ref|ZP_01062646.1| Flp pilus assembly protein TadB [Vibrio sp. MED222] gi|85837213|gb|EAQ55325.1| Flp pilus assembly protein TadB [Vibrio sp. MED222] Length = 304 Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 91/183 (49%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 +L ++ +F +FP+AL+I+ ++ +G + A + Q + V EF+ + E + Sbjct: 119 NNLKARQVERFKTNFPDALNILSGAISSGQSIIHAFEYVGKQLDNEVGKEFKFMAERLLI 178 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + R P E FF++ I + GG L + + ++R++ D + ++ K A Sbjct: 179 GEDPDDVLERSSNTFPYLEYFFFASTIRINLARGGQLKDVINKINRLMFDSRAVEKKKNA 238 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ EA+ASA II LP ++ FTSP + ++ + G + A L+G + L Sbjct: 239 LTSEARASAKIIACLPVIFLIILKFTSPENYSFVMFEEAGQPIFYYVLASELVGFFCIWL 298 Query: 182 MIN 184 ++ Sbjct: 299 ILR 301 >gi|319783870|ref|YP_004143346.1| type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169758|gb|ADV13296.1| Type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 321 Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 99/172 (57%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P AL++I R ++AG PV A+A++ + DP+ SEF + + G L +++ + Sbjct: 149 QLPEALELITRGLKAGHPVPVAIAMVAREMPDPIGSEFGVIADEVTYGSDLVSALNSLFD 208 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + +++ F T +S+Q+ GGNL E L L+ +R+R ++ KV+A++ E + SA+I+ Sbjct: 209 RVGQEDLPLFVTAVSIQTSSGGNLREILDGLATTIRERGKLRRKVRAIATEGRMSAYILT 268 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 ++P + + PG+ + + +P+ LLG + ++++G ++M M NF Sbjct: 269 AVPALLFAAIMALMPGFYSDVWGEPKTWYLLGASITWLMLGNLMMFKMSNFK 320 >gi|167463710|ref|ZP_02328799.1| Flp pilus assembly protein TadB-like protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384398|ref|ZP_08058084.1| hypothetical protein PL1_0930 [Paenibacillus larvae subsp. larvae B-3650] gi|321150756|gb|EFX44216.1| hypothetical protein PL1_0930 [Paenibacillus larvae subsp. larvae B-3650] Length = 304 Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 81/191 (42%), Gaps = 8/191 (4%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-------DPVRSEFRRVI 56 L+++R + F AL + S+ AG V +A + + EF ++ Sbjct: 115 LMRRRKEEMNQQFKQALQCLSTSLSAGKSVENAFRDTLQDLELLYPDPSAMIVQEFGVMV 174 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 G + I L++++ F+ V + GGNL E + S ++ ++ + Sbjct: 175 RRLDNGEPIEACILGFAERAGLEDITNFADVFITCKRTGGNLIEVIRRTSHLISEKLQIV 234 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 ++ + + K + I+ + P + ++ F+SP YM L G +++ + + + + Sbjct: 235 QEISVMVAQKKFESKIMLTAPVAIIGILCFSSPDYMKPLYE-GAGRLIMTIGLTVLFLCL 293 Query: 177 MVMRLMINFDV 187 + + +++ V Sbjct: 294 WITKKIMDIKV 304 >gi|288956973|ref|YP_003447314.1| type II secretion system [Azospirillum sp. B510] gi|288909281|dbj|BAI70770.1| type II secretion system [Azospirillum sp. B510] Length = 319 Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats. Identities = 76/184 (41%), Positives = 115/184 (62%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L +RT +FLD P+A+D++VR+ RAG+PVS+A+ ++ +PVRSEFRRV + Sbjct: 133 LGMLTHRRTIRFLDRLPDAIDLVVRASRAGVPVSEAIIAAGRETEEPVRSEFRRVADQVS 192 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L +++ + + L + FF + VQ + GG L+E L NLS ILR RK+M+ KV+ Sbjct: 193 IGVDLKDALRQSSARVRLPDFDFFVVALVVQRETGGQLAETLGNLSDILRKRKDMRLKVK 252 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ E + SA I+ SLPF L++ P Y+ L DP GH LL AAA + +G+ V+ Sbjct: 253 ALTAEGRMSANIVASLPFVSGGLIFAVDPTYVLNLFTDPLGHKLLAAAAACLGLGMFVIG 312 Query: 181 LMIN 184 M Sbjct: 313 RMTR 316 >gi|325109818|ref|YP_004270886.1| type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] gi|324970086|gb|ADY60864.1| Type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] Length = 319 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 94/184 (51%), Gaps = 3/184 (1%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R D P D++ R++ +G +S A ++ Q P+ EF+ + Q+LG Sbjct: 138 QRRNQRINTLRDQLPETFDLMSRAIESGQTISGAFQLVSTQCGGPIAKEFQHCCQQQNLG 197 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L ++ + R + E+ F+ + VQ Q GG+ S+ L NL+ +R+R + KV+A+ Sbjct: 198 LPYEITLRDLARRTGVMELQMFAVALIVQRQAGGDPSDVLKNLAEAVRNRIKLAMKVKAI 257 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E +A AW++ +LPF +Y Y +VL+ P ++ + A + +GI +R + Sbjct: 258 TSEGRAQAWVLSALPFVSFGGIYLLDRDYASVLLERPN---VMAIMAVSIALGIAWIRQI 314 Query: 183 INFD 186 + + Sbjct: 315 VCIE 318 >gi|161524902|ref|YP_001579914.1| type II secretion system protein [Burkholderia multivorans ATCC 17616] gi|189350348|ref|YP_001945976.1| Flp pilus assembly protein [Burkholderia multivorans ATCC 17616] gi|160342331|gb|ABX15417.1| type II secretion system protein [Burkholderia multivorans ATCC 17616] gi|189334370|dbj|BAG43440.1| Flp pilus assembly protein [Burkholderia multivorans ATCC 17616] Length = 330 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 85/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R K + P+ LD IVR V G V A + + +P+R V Sbjct: 145 LASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQSALQTTEEPLRGCLDHVSRMLR 204 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + + +E +V+ + + GG L ++ +RD + + ++ Sbjct: 205 TGVEIDRAMLHIAKIYRTKEFELLGSVLRLSVKYGGRADVMLERMAIFMRDLEQAERELT 264 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SA+++ LP + + V T+P Y+ + NDP G MLL A L G + + Sbjct: 265 AMSAETRLSAFVLMMLPIAIGSFVVMTNPKYLQGMWNDPSGRMLLTFAFLAQLAGSVWLY 324 Query: 181 LMINFD 186 M Sbjct: 325 RMARLR 330 >gi|326797331|ref|YP_004315151.1| type II secretion system F domain protein [Marinomonas mediterranea MMB-1] gi|326548095|gb|ADZ93315.1| Type II secretion system F domain protein [Marinomonas mediterranea MMB-1] Length = 327 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 57/187 (30%), Positives = 100/187 (53%), Gaps = 4/187 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 ++ + K +F + P A+D IVR V+AG+P ++A +I P+ E + + L Sbjct: 141 RNAMGKHLKEFKQNLPQAIDSIVRVVKAGVPATNAFGLIANNLPGPLAKELALIDKWLSL 200 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GLSL +++ +PL E FF+ ++ + + GG LS+ L LS LR+R+ + K++A Sbjct: 201 GLSLRQAMQDSAIRVPLNEYRFFAVILVINQEAGGRLSDTLERLSETLRERQELALKIRA 260 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI----M 177 + E +ASA I+ L +YF SP L++DP G+ +L A +L G+ Sbjct: 261 KTSEVRASAVIVAMLAPLSLAYMYFNSPKDFQFLLSDPTGNSVLIYAFGSVLTGLAITHF 320 Query: 178 VMRLMIN 184 +++ +I Sbjct: 321 MIKRVIR 327 >gi|241667101|ref|YP_002985185.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862558|gb|ACS60223.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 287 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 88/187 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ +++R + P A+D IV +VR G P++ AV + P EF R+ Q Sbjct: 101 IRYFLQRRWLQIESQLPYAVDQIVSAVRTGKPLAIAVNAVADTGQMPASREFERIAREQK 160 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L E++ R R +P + + ++ GG++SE L +S+ ++ + K+ Sbjct: 161 LGIGLVEALDRHGRNVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKIT 220 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 S +A+ + ++ + +++F P ++ + + G ++ V A G MR Sbjct: 221 TSSSQARMNFRVVNGGALFMMLMIFFGQPELIDKVFGNAIGIVIAIVGAILYATGFFWMR 280 Query: 181 LMINFDV 187 M+ V Sbjct: 281 SMMKVSV 287 >gi|264680615|ref|YP_003280525.1| type II secretion system protein [Comamonas testosteroni CNB-2] gi|262211131|gb|ACY35229.1| type II secretion system protein [Comamonas testosteroni CNB-2] Length = 321 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 87/186 (46%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +K A+ P LD VR V G V A + + DP++S + Sbjct: 132 LYTRAQKYRARLTQQLPGFLDNTVRLVTIGNSVQAAFQMAAASTKDPLQSVMEKAASLAR 191 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ L +++ + R L E+ + ++ + + GG + L ++ +RDR+ + + Sbjct: 192 AGMDLENAVAHVARQTRLDELHLLAAILRISVRYGGRVDLLLERVANFMRDREQAEQDLS 251 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + SAW++ LP V L+ + Y + +D G ++GVAAA + G++++ Sbjct: 252 AMTAETRLSAWVLSLLPVAVCCLIISFNASYFLNMWDDASGRNIIGVAAALQVFGVVLLY 311 Query: 181 LMINFD 186 + D Sbjct: 312 RLAKLD 317 >gi|295107880|emb|CBL21833.1| hypothetical protein [Ruminococcus obeum A2-162] Length = 247 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 85/192 (44%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE---- 57 K LI++R F +AL+ + +V+AG V +AV E V E Sbjct: 56 KGLIRERKKNLNYQFKDALNALSVAVQAGYSVENAVMACSRDLERLYPQETDIVREFHYM 115 Query: 58 --TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + + + E + ++++ F+ V + GG+++ + SR+L D+ ++ Sbjct: 116 ETQLKVSVPVEELLMSFGDRSGIEDIENFAAVFYTAKRTGGDMNRIIQTSSRMLGDKIDV 175 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + +++ KA I+ +P + + TSPG++ VL +P G + + + + Sbjct: 176 RREIETTLAAKKAEQMIMSLMPAGIILYLKMTSPGFLEVLYGNPFGILAMSLCLGIYGLS 235 Query: 176 IMVMRLMINFDV 187 + R +++ +V Sbjct: 236 YWLGRRIVDIEV 247 >gi|148657457|ref|YP_001277662.1| type II secretion system protein [Roseiflexus sp. RS-1] gi|148569567|gb|ABQ91712.1| type II secretion system protein [Roseiflexus sp. RS-1] Length = 335 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 101/177 (57%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 +F D P LD+I S+R G + ++A + +P R+E RRV + LGLS+++++ Sbjct: 159 EFNDQLPETLDLITASMRGGFSLVQSLASVASDVQEPTRTELRRVFQEVQLGLSVTQALD 218 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 +V+ M ++ T I + +++GGNL + L N+S +R+R ++ +V+ ++ + S+ Sbjct: 219 NLVQRMESADLDLVVTAIKIHARVGGNLGQILENISTTMRERAKLRREVRVITSMQRISS 278 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 ++IG+LPF ++ +++ +P YM L + A ++G +++R +++ + Sbjct: 279 YVIGALPFALALIIFTINPTYMMRLFQPGLILCIPIGAFISSVVGFLIIRKIVDVRI 335 >gi|319779647|ref|YP_004130560.1| Flp pilus assembly protein TadB [Taylorella equigenitalis MCE9] gi|317109671|gb|ADU92417.1| Flp pilus assembly protein TadB [Taylorella equigenitalis MCE9] Length = 281 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 48/186 (25%), Positives = 93/186 (50%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K LIKKR K + FP+ L + ++++G + ++ +I S P+ EF + L Sbjct: 95 KWLIKKRQKKLIQQFPDFLLSLSNALKSGAGLQHSIKLINETSEKPISQEFALFLHQIRL 154 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S+ ES++ +++ P +S F T++ V + GGNL+ L LS +R+ + K+ A Sbjct: 155 GSSVEESLTVLLQRNPSMNMSQFVTLVKVSYKTGGNLANMLEVLSTNMRENNLLIKKIDA 214 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ +++ +WI+ LP + ++ +P N G+ L + + G + M+ Sbjct: 215 LTSQSRMQSWIMTLLPIFLLMVLSVVAPNLTNYFWEHKYGYFALALIVIMEIGGFLTMKK 274 Query: 182 MINFDV 187 ++ V Sbjct: 275 LMKIRV 280 >gi|261820218|ref|YP_003258324.1| type II secretion system F domain protein [Pectobacterium wasabiae WPP163] gi|261604231|gb|ACX86717.1| Type II secretion system F domain protein [Pectobacterium wasabiae WPP163] Length = 326 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 56/183 (30%), Positives = 98/183 (53%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + ++K + P A+D I RS RAG+PV++ +++ + P+ +EF+ + L Sbjct: 141 RSTLQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTGPLANEFKTIDHWLRL 200 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L + I +P+ E FF ++ + + GG L E L LS LRDR+ ++ KVQ+ Sbjct: 201 GIPLRQVIQASATRVPMAEYRFFVVILIINQEAGGRLGETLERLSATLRDRRELQLKVQS 260 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + EA+ASA I+ +L +Y SP + L +DP G +L A + +G++V + Sbjct: 261 KTSEARASAKIVAALFPGCLAYLYMKSPEDFSFLFSDPVGTSVLIYALCSVSVGMLVTHV 320 Query: 182 MIN 184 M+ Sbjct: 321 MVK 323 >gi|103488239|ref|YP_617800.1| type II secretion system protein [Sphingopyxis alaskensis RB2256] gi|98978316|gb|ABF54467.1| type II secretion system protein [Sphingopyxis alaskensis RB2256] Length = 333 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 64/187 (34%), Positives = 103/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L +R + FP ALDI VR +R+G P+ A+ ++ + DP+ +EF V + Sbjct: 147 ITRLADRRRRRMEQQFPIALDIFVRGLRSGHPIPAALQLLTVEMEDPIGTEFGIVTDEIA 206 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 GL L E+++RM L ++ F +SVQ + GGNL+E L NLS+++RDR +M KV+ Sbjct: 207 FGLDLREALARMAERWGLPDMHMFVVSVSVQMETGGNLAEILENLSKVIRDRASMFMKVR 266 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + +A I+ +LP ++ T+P + + DP + G L+G +R Sbjct: 267 ALSSEGRMTAVILTALPILAFVGLFLTNPVFYLDVATDPIFFIGFGGLILLYLVGFFTIR 326 Query: 181 LMINFDV 187 MI+ V Sbjct: 327 RMIDLKV 333 >gi|186473166|ref|YP_001860508.1| type II secretion system protein [Burkholderia phymatum STM815] gi|184195498|gb|ACC73462.1| type II secretion system protein [Burkholderia phymatum STM815] Length = 275 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 44/187 (23%), Positives = 90/187 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + +R P+ L +I +RAG A+ V +S P+ EF ++ Sbjct: 89 LSWMRTRRIETLERQLPDMLLMIAGGLRAGASFPIALESAVQESVPPISQEFDLLLREIR 148 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L ++ + + +P+ + + + + ++GGNL++AL +++ LRD+ M+ K++ Sbjct: 149 LGIDLDVAMRNIEQRIPVPDFMMVTAAVMISREVGGNLAQALESVASTLRDKLQMEGKIR 208 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + + ++ LP + ++ P M L P G L V AA L+G + Sbjct: 209 ALTSQGRMQGIVMTCLPLFLMMVLRAMEPVAMAPLFTSPIGWATLAVVAAMELLGYASIA 268 Query: 181 LMINFDV 187 ++ +V Sbjct: 269 RIVRINV 275 >gi|148974881|ref|ZP_01811861.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3] gi|145965390|gb|EDK30639.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3] Length = 304 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 46/183 (25%), Positives = 91/183 (49%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 L +++ +F +FP+AL+I+ ++ +G + A + Q + V EF+ + E + Sbjct: 119 NKLKQRQMDRFKTNFPDALNILSGAISSGQSIIHAFEYVGKQLDNEVGKEFKFMAERLLI 178 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + + R P E FF++ I + GG L + + ++R++ D + ++ K A Sbjct: 179 GEAPDDVLERSSNTFPYLEYFFFASTIRINLARGGQLKDVINKINRLMFDSRAVEKKKNA 238 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ EA+ASA II LP ++ FTSP + ++ + G + L+G + L Sbjct: 239 LTSEARASAKIIACLPVIFLIILKFTSPENYSFVMFEEAGQPIFYYVLVSELLGFFCIWL 298 Query: 182 MIN 184 ++ Sbjct: 299 ILR 301 >gi|332970973|gb|EGK09947.1| integral membrane protein [Desmospora sp. 8437] Length = 315 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 90/187 (48%), Gaps = 1/187 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + ++ + AGL + + ++V + PV+ E RV+ Sbjct: 130 LRSRQHIYAQRMDSQLSEVCRLLSSAASAGLSIPQGLRLVVQEMPAPVKIELGRVVREIE 189 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG L +++ ++ + Q++ F + +Q + GG+L++ ++ ++ + +RK + ++ Sbjct: 190 LGRDLEGALNDLLERIHTQDMKVFINALIIQRRAGGDLAKVMSQMAATMEERKIIHQTIK 249 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ +A+ SA+ + + ++ ++ G+ + L G ++L + ++G++++R Sbjct: 250 AVTSQARTSAYALPIISLLIAFMLSKMIDGFYD-LFTTLPGMIVLALFVGLQVLGVVLVR 308 Query: 181 LMINFDV 187 N V Sbjct: 309 KFSNIRV 315 >gi|115358175|ref|YP_775313.1| type II secretion system protein [Burkholderia ambifaria AMMD] gi|115283463|gb|ABI88979.1| type II secretion system protein [Burkholderia ambifaria AMMD] Length = 325 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 57/185 (30%), Positives = 118/185 (63%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+++ +FL+ FP+A+D+IVR+VRAG+PV+ A++ + +++PVRS FR + ++ + Sbjct: 138 RALVERFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRV 197 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L + +++ + + + SFF+ + +Q + GG+L E L LS I+R R++++ K +A Sbjct: 198 GVDLKDVLTQASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + + II ++PF + ++ + Y+ +L + GH++L +AA + IG++ + Sbjct: 258 LTAEGRITTKIISAVPFVMIGALFLVNRSYVMLLFDTHAGHVMLTIAAVLLTIGLLTINK 317 Query: 182 MINFD 186 + D Sbjct: 318 ISKLD 322 >gi|84385700|ref|ZP_00988731.1| putative TadB [Vibrio splendidus 12B01] gi|84379680|gb|EAP96532.1| putative TadB [Vibrio splendidus 12B01] Length = 304 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 46/177 (25%), Positives = 89/177 (50%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R KF D+FP+AL+I+ ++ +G + A + Q + V EF+++ E +G + Sbjct: 125 REKKFKDNFPDALNILSGALSSGQSIVHAFEYVGTQLDNEVGKEFKKMSERLLIGEDPDD 184 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++R P E FF++ I + GG L + ++RI+ + + ++ K AL+ EA+ Sbjct: 185 VLARSASTFPYVEYFFFASTIRINLSRGGQLKNVINRINRIMFEARAIEKKKNALTSEAR 244 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +SA II +LP ++ TSP ++ + G + LIG ++ +++ Sbjct: 245 SSAKIIAALPVIFMCILKLTSPENYQFVMFEEGGKPIFYYVLISELIGFFLISMILR 301 >gi|170720031|ref|YP_001747719.1| type II secretion system protein [Pseudomonas putida W619] gi|169758034|gb|ACA71350.1| type II secretion system protein [Pseudomonas putida W619] Length = 293 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 102/184 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R + ++ P LD VRS++AG ++DAV + S +P+RS RV Sbjct: 108 LSWLCRRRVHQLVEQLPALLDYSVRSLKAGRTLNDAVLGGIDGSREPLRSTMTRVRRNVQ 167 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L ++++ + E+ F+ + + + GGN SE + NL +++R+R+ +++ Sbjct: 168 LGVPLDDAVNELAELYNQDELRLFAMGLRINQRYGGNTSELMENLIKLIREREQGSRQLK 227 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + +A I+G+LP C+ +P Y+ + D G M+L +A A ++G +V+ Sbjct: 228 AMTGETRITAMILGALPLCMVGYFLMANPHYLLTMWQDSSGQMMLLLAFALQVVGCLVLW 287 Query: 181 LMIN 184 M+ Sbjct: 288 RMMR 291 >gi|254381955|ref|ZP_04997318.1| integral membrane protein [Streptomyces sp. Mg1] gi|194340863|gb|EDX21829.1| integral membrane protein [Streptomyces sp. Mg1] Length = 312 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 85/187 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R +F++ P I+ + +AGL + A+ + + P E RV + Sbjct: 126 LNWQRSRRNERFINQLPELARILANATQAGLALRTAIGMAADELEAPAGEELARVADRLA 185 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S+ ES+ + +P +E+ + + + ++ GG + +L NL+ L RK + +++ Sbjct: 186 IGHSIEESLGEITERLPSRELVVLVSTLVLSARAGGAIVGSLRNLTVTLEQRKETRREIR 245 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +A+++ + LV PG ++ + G + VA +G +++R Sbjct: 246 TQLSQVTVTAYLVPVMGLGSLLLVDAMMPGALDRMTGAVIGQTAVLVAIGLFTLGFVLIR 305 Query: 181 LMINFDV 187 + DV Sbjct: 306 RLSKIDV 312 >gi|325108940|ref|YP_004270008.1| type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] gi|324969208|gb|ADY59986.1| Type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] Length = 323 Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 95/161 (59%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P+AL+++ R++R+G ++ + V+V + DP+ EF E Q+LG+ + +++ + Sbjct: 151 QLPDALELVARALRSGHSLASGLQVVVQEMPDPISREFGMAYEEQNLGVPIDQALKNVFH 210 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 +P + FF+T +++Q Q GG+L+E L + I+R+R + +VQAL+ E + S ++ Sbjct: 211 RVPNLDFKFFATAVAIQRQSGGDLAEILDKIGHIIRERFRIMGQVQALTGEGRISGIVLM 270 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 +LP + ++Y+ +P YM +L + G ++ A ++G Sbjct: 271 ALPIVLFFVMYYLNPEYMMLLFTEEMGRKMIAGAVVMQILG 311 >gi|319941898|ref|ZP_08016219.1| hypothetical protein HMPREF9464_01438 [Sutterella wadsworthensis 3_1_45B] gi|319804551|gb|EFW01421.1| hypothetical protein HMPREF9464_01438 [Sutterella wadsworthensis 3_1_45B] Length = 292 Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 55/174 (31%), Positives = 95/174 (54%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 FL FP A+D RS++AG+PV A+ ++ D ++ +GL E++ Sbjct: 115 AFLSRFPEAVDNFTRSIQAGIPVDRALKILGEAYDDEFGRRVLKLCREMKVGLPFREALG 174 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + +V FF V+++ + G LS LA+LS +LR+R+ + K++AL+ E++ASA Sbjct: 175 NFADELDDPDVDFFCEVLALNRETGSALSPMLASLSMMLRERRAIDRKLKALTSESRASA 234 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 ++ LP + L F +P + L+NDP G ++ G A A ML G ++++ M Sbjct: 235 RVLCLLPVFILGLQAFLNPSQLLFLVNDPAGRIVAGCALACMLAGFIIIQRMSR 288 >gi|104779903|ref|YP_606401.1| type II/IV secretion system membrane protein [Pseudomonas entomophila L48] gi|95108890|emb|CAK13586.1| Putative type II/IV secretion system membrane protein [Pseudomonas entomophila L48] Length = 292 Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 53/184 (28%), Positives = 100/184 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +++ + ++ P LD VRS++AG +SDAV V + +P+RS RV Sbjct: 107 LSWRCRRQLRQIIEQLPGLLDYSVRSLKAGRTLSDAVLGGVEATREPLRSAMLRVRRNVQ 166 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L +++S + E+ F+ + + + GGN SE + NL +++R+ + +++ Sbjct: 167 LGVPLDDAVSELAELYGQDELRMFALGLRINQRHGGNASELMENLIKLIREHEQGDRQLR 226 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + +AWI+G+LP + F +PGY+ + D G M+L A A +G +V+ Sbjct: 227 AMTGETRITAWILGALPLGMVGYFLFANPGYLMAMWRDSHGQMMLLFAFALQAVGCLVLW 286 Query: 181 LMIN 184 M+ Sbjct: 287 RMMR 290 >gi|172062963|ref|YP_001810614.1| type II secretion system protein [Burkholderia ambifaria MC40-6] gi|171995480|gb|ACB66398.1| type II secretion system protein [Burkholderia ambifaria MC40-6] Length = 325 Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 57/185 (30%), Positives = 118/185 (63%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+++ +FL+ FP+A+D+IVR+VRAG+PV+ A++ + +++PVRS FR + ++ + Sbjct: 138 RALVERFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRV 197 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L + +++ + + + SFF+ + +Q + GG+L E L LS I+R R++++ K +A Sbjct: 198 GVDLKDVLTQASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + + II ++PF + ++ + Y+ +L + GH++L +AA + IG++ + Sbjct: 258 LTAEGRITTKIISAVPFVMIGALFLVNRSYVMLLFDTHAGHVMLTIAAVLLTIGLLTINK 317 Query: 182 MINFD 186 + D Sbjct: 318 ISKLD 322 >gi|27378606|ref|NP_770135.1| hypothetical protein blr3495 [Bradyrhizobium japonicum USDA 110] gi|27351754|dbj|BAC48760.1| blr3495 [Bradyrhizobium japonicum USDA 110] Length = 338 Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 51/180 (28%), Positives = 97/180 (53%), Gaps = 1/180 (0%) Query: 6 KKRTA-KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++R A + P+A+ ++ +VR+GLPV +A + + P +F V +LG Sbjct: 154 QRRVALQLFRQLPDAIQLVTSTVRSGLPVHEAFRALAREMPQPTAGQFAIVCNEVNLGRP 213 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +E++ + R + E + F+ ++VQ + GG+L+E L NL +R R + A+ +AL+ Sbjct: 214 PAEAVEGVYRRTQVAEYAMFAVTLAVQLKSGGSLAETLQNLGDTVRQRVALAARAKALAG 273 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E S+ + P ++Y ++P +++L DP G+ LL A A +L+G +V+ M+ Sbjct: 274 EVIFSSRALTISPLIGGGVLYASNPQTVDLLFTDPVGNKLLAYAVASVLVGALVISWMVR 333 >gi|160897512|ref|YP_001563094.1| type II secretion system protein [Delftia acidovorans SPH-1] gi|160363096|gb|ABX34709.1| type II secretion system protein [Delftia acidovorans SPH-1] Length = 320 Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 45/186 (24%), Positives = 81/186 (43%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR + L P LD +VR + G A + + DP+ ++ Sbjct: 135 IWRRQAKRRERLLQQLPGFLDNMVRLISIGNSPHAAFQMALNNVPDPLGDALQQAAAMLS 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L +++ ++ R L E + V + + GG L +S +RDR++ + ++ Sbjct: 195 ASPDLGQAMGQLERNWRLPEFGLLAAVFRMSVRYGGRADLVLERVSAYIRDRQSAERELH 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + SAW++ LP V L+ + GY + ND G ++ VAAA +G ++ Sbjct: 255 ALSSEIRMSAWVLALLPLVVGALIMVINRGYFMRMWNDDSGQTMVLVAAALEALGAFLLY 314 Query: 181 LMINFD 186 + Sbjct: 315 RLAKLR 320 >gi|171320622|ref|ZP_02909642.1| type II secretion system protein [Burkholderia ambifaria MEX-5] gi|171094135|gb|EDT39222.1| type II secretion system protein [Burkholderia ambifaria MEX-5] Length = 325 Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 57/185 (30%), Positives = 116/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+++ +FL+ FP+A+D+IVR+VRAG+PV+ A++ + +++PVRS FR + ++ + Sbjct: 138 RALVERFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRV 197 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + ++ + + + SFF+ + +Q + GG+L E L LS I+R R++++ K +A Sbjct: 198 GADLKDVLTHASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + + II ++PF + ++ + Y+ +L + GH++L +AA + IG++ + Sbjct: 258 LTAEGRITTKIISAVPFVMIGALFLVNRSYVMLLFDTHAGHVMLTIAAVLLTIGLLTINK 317 Query: 182 MINFD 186 + D Sbjct: 318 ISKLD 322 >gi|170704075|ref|ZP_02894707.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] gi|170131017|gb|EDS99712.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] Length = 325 Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 57/185 (30%), Positives = 118/185 (63%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+++ +FL+ FP+A+D+IVR+VRAG+PV+ A++ + +++PVRS FR + ++ + Sbjct: 138 RALVERFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRV 197 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L + +++ + + + SFF+ + +Q + GG+L E L LS I+R R++++ K +A Sbjct: 198 GVDLKDVLTQASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + + II ++PF + ++ + Y+ +L + GH++L +AA + IG++ + Sbjct: 258 LTAEGRVTTKIISAVPFVMIGALFLVNRSYVMLLFDTHAGHVMLTIAAVLLTIGLLTINK 317 Query: 182 MINFD 186 + D Sbjct: 318 ISKLD 322 >gi|84685157|ref|ZP_01013056.1| Putative Flp pilus assembly protein TadB [Maritimibacter alkaliphilus HTCC2654] gi|84666889|gb|EAQ13360.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium HTCC2654] Length = 316 Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 95/181 (52%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR P+ALD++ R + G P++ + + DP+ +EFR + + G SL+ Sbjct: 136 KRADALTRQLPDALDLMKRGLSVGHPLNVTIRNVATTLPDPIAAEFRILADQVAYGDSLT 195 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + R + +++ + S + +Q GGNL L L+R++R R M+ +V A+S E Sbjct: 196 DAVDDLARRIDIEDFHYLSAAVQIQHATGGNLGAMLETLARVIRGRFAMRRRVSAVSSEG 255 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + +A I+ ++P + T+P Y + +DP + G A +L +++R +++F Sbjct: 256 RITAIILSAMPVLMYVGTSLTAPEYYASVKDDPAFWPMCGAILALVLGNALMLRKLVSFR 315 Query: 187 V 187 V Sbjct: 316 V 316 >gi|299532822|ref|ZP_07046209.1| type II secretion system protein [Comamonas testosteroni S44] gi|298719046|gb|EFI60016.1| type II secretion system protein [Comamonas testosteroni S44] Length = 327 Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 82/183 (44%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +K + P LD VR V G V A + + DP++S + G+ Sbjct: 141 RAQKYRTRLTQQLPGFLDNTVRLVTIGNSVQAAFQMAAASTKDPLQSVMEKAASLARAGM 200 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L +++ + R L E+ + ++ + + GG + L ++ +RDR+ + + A++ Sbjct: 201 DLENAVTHVARQTRLDELHLLAAILRISVRYGGRVDLLLERVANFMRDREQAEQDLSAMT 260 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAW++ LP V L+ + Y + ND G ++ A A + G++++ M Sbjct: 261 AETRLSAWVLSLLPVAVGCLIISFNASYFLNMWNDASGRNIIWAAVALQVFGVLLLYRMA 320 Query: 184 NFD 186 D Sbjct: 321 KLD 323 >gi|319940444|ref|ZP_08014789.1| hypothetical protein HMPREF9464_00008 [Sutterella wadsworthensis 3_1_45B] gi|319806070|gb|EFW02819.1| hypothetical protein HMPREF9464_00008 [Sutterella wadsworthensis 3_1_45B] Length = 326 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 54/175 (30%), Positives = 83/175 (47%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 + P A+D I R RAG+P A + + E R + LG+ L + + Sbjct: 149 EELGKSLPEAIDSIARICRAGVPAQTAFGLAAQNLRGALSEELRTIDRWLRLGVPLKQVL 208 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 +PL E FF+ ++ + + GG L++ L L+ LR+R + KVQA + EA+AS Sbjct: 209 QESAHRVPLPEYRFFAVIVIISQESGGRLADTLERLAATLRERAELALKVQAKTSEARAS 268 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 I+ L V Y +P L+ DP G +LG AAA + G+ V LM+ Sbjct: 269 IKIVACLVPGVLIYQYIQAPQDFQFLVTDPTGLKVLGYAAASVAAGLFVTWLMVR 323 >gi|149188842|ref|ZP_01867132.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1] gi|148837262|gb|EDL54209.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1] Length = 301 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 51/183 (27%), Positives = 97/183 (53%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L +R +F FP+AL++++ +V AG + AV+ + + V EF+ + + L Sbjct: 115 QWLSNRRRVQFQQTFPDALNVLMSAVTAGESLMQAVSFVGQNLDNEVGREFKNMGDRLKL 174 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S + + R + P E FF+ I GG L LA L R+L D + M+ K A Sbjct: 175 GESPDQVLQRAAKRFPYPEFIFFTIAIRANMSRGGQLRGVLARLIRVLVDARTMETKKMA 234 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ EA+ SA ++ ++P + ++Y +P +N +++DP+G +L L+G+ ++ L Sbjct: 235 MTSEARISAKVVAAIPVIFAVILYNVNPDNINYILHDPKGVWVLYYVVGSELVGLFIVWL 294 Query: 182 MIN 184 ++ Sbjct: 295 LVK 297 >gi|28900580|ref|NP_800235.1| putative TadB protein [Vibrio parahaemolyticus RIMD 2210633] gi|28808960|dbj|BAC62068.1| putative TadB [Vibrio parahaemolyticus RIMD 2210633] Length = 289 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 87/175 (49%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 +F D+FP+AL+I+ ++ +G + A + Q + V EF+++ E +G + + Sbjct: 112 QRFKDNFPDALNILSGALSSGQSIVHAFEYVGTQLDNEVGEEFKKMSERLLIGEDPDDVL 171 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 +R P E FF+ I + GG L + + ++RI+ + + ++ K AL+ EA+AS Sbjct: 172 ARSAASFPYVEYFFFAATIRINLSRGGQLKDVINRINRIMFEARAIEKKKNALTSEARAS 231 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A II +LP ++ TSP N ++ + G + IG + +++ Sbjct: 232 AKIIAALPVIFIMILKVTSPENYNFVMFEEGGKPIFYYVLVSEAIGFFFIYMILR 286 >gi|238793625|ref|ZP_04637248.1| Type II secretion system protein F domain protein [Yersinia intermedia ATCC 29909] gi|238727040|gb|EEQ18571.1| Type II secretion system protein F domain protein [Yersinia intermedia ATCC 29909] Length = 293 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 78/184 (42%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ K F DFP L +I + +G ++ + + P+ E + + Sbjct: 107 IRFPRKNNHTIFKRDFPEVLLMINMAASSGTSINQVLERCGKEVGGPLGDELSLICRRLN 166 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S + E F T+I + Q GG L E + LS+++ K + K Sbjct: 167 VGESPETVFYDAYQRFHYPEFYFLITIILLNLQQGGQLRELTSRLSQVITKNKTSEQKKA 226 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ + + S I+ +PF S +YF P + + N P G ++ + +IGI ++R Sbjct: 227 VMTAQTRMSVNILSIIPFVFSLFLYFMDPTAIESMWNHPTGRIIYYYIISSEIIGIALIR 286 Query: 181 LMIN 184 M+ Sbjct: 287 SMLR 290 >gi|225572861|ref|ZP_03781616.1| hypothetical protein RUMHYD_01052 [Blautia hydrogenotrophica DSM 10507] gi|225039787|gb|EEG50033.1| hypothetical protein RUMHYD_01052 [Blautia hydrogenotrophica DSM 10507] Length = 247 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 87/192 (45%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRV 55 + I+++ + F + LD + +++AG V +A+++ + + E R + Sbjct: 56 QQKIREQQRELNYQFKDMLDSLNVTLQAGYSVENAISLCARELERLYGREADLTRELREM 115 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + L + + + ++V F+ V + GG++ + L +++L D+ + Sbjct: 116 EDKLKLSVPVERLFMDLGSRSHSEDVENFAVVFQTAKRSGGDMRKILEKSAQMLGDKIEV 175 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K +++A+ K+ ++ +PF + + TSPG++ VL + G ++ A L Sbjct: 176 KKEIEAVLTAKKSEQRLMSVMPFGIILYMSLTSPGFLEVLYGNLFGVAVMTGCLAVYLFA 235 Query: 176 IMVMRLMINFDV 187 + +++ +V Sbjct: 236 WWLGNRIVDIEV 247 >gi|313835700|gb|EFS73414.1| type II secretion system F domain protein [Propionibacterium acnes HL037PA2] gi|314928371|gb|EFS92202.1| type II secretion system F domain protein [Propionibacterium acnes HL044PA1] gi|314970223|gb|EFT14321.1| type II secretion system F domain protein [Propionibacterium acnes HL037PA3] gi|328908048|gb|EGG27807.1| LOW QUALITY PROTEIN: Type II secretion system F domain protein [Propionibacterium sp. P08] Length = 307 Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 94/186 (50%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ ++RTAKF++ P ++ + AGL + A+A++ + +P RSEF +V Sbjct: 121 VRRSQQRRTAKFVNQLPELARLLANASHAGLSLPTAIAMVSDELGEPARSEFAQVENRLR 180 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL ++ + ++ +EV+ + + V ++ GG+L AL ++ L +RK + +V Sbjct: 181 FGASLQTALDELASHVRSREVTVLMSTLIVSARSGGSLVTALRGIADSLEERKETRREVT 240 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + ++ A+A++I + + + PG + ++ + G + L + +G +V+R Sbjct: 241 TILSQSLATAYLIIIIGLGLLVALNMFEPGTVELMTHSLVGRICLIAGLSLFAVGFVVIR 300 Query: 181 LMINFD 186 M Sbjct: 301 QMTKVK 306 >gi|220918107|ref|YP_002493411.1| type II secretion system protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219955961|gb|ACL66345.1| type II secretion system protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 321 Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 59/181 (32%), Positives = 104/181 (57%), Gaps = 1/181 (0%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R+ + + P ALD++ RS+RAG + A V+ + +PV EF R E+Q LGL + Sbjct: 140 RRSNRLSEQLPEALDMMARSLRAGHAFTSAFEVVATEMPEPVAVEFARAFESQRLGLPVE 199 Query: 67 ESISRMVRYMP-LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++I +M P +++ F+ +Q + GGNL+E L +++ +R R +K+ AL+ E Sbjct: 200 QAIVQMTERAPGNRDLRIFAVSALIQKETGGNLAEILGSIAETIRARYRFYSKLSALTAE 259 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +AS I+G LP ++ ++ +P YM L++DP GHM++ AA L+G+ + + Sbjct: 260 GRASGAILGMLPILMALVLRIMNPAYMGRLVSDPLGHMIMLFAALSWLVGVAWLYSLTKV 319 Query: 186 D 186 D Sbjct: 320 D 320 >gi|172060498|ref|YP_001808150.1| type II secretion system protein [Burkholderia ambifaria MC40-6] gi|171993015|gb|ACB63934.1| type II secretion system protein [Burkholderia ambifaria MC40-6] Length = 330 Score = 98.7 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 45/186 (24%), Positives = 85/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R K + P+ LD IVR V G V A + + +P+R V Sbjct: 145 LTSRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTTEEPLRGCLDHVSRMLR 204 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + + QE +V+ + + GG L ++ +RD + + ++ Sbjct: 205 TGVEIDRAMLHIAKIYRTQEFELLGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELT 264 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SA+++ LP + + V T+P Y+ + DP G MLL +A + G + + Sbjct: 265 AMSAETRLSAFVLVMLPIGIGSFVVMTNPKYLEGMWIDPGGRMLLVLAFLLQIAGSVWLY 324 Query: 181 LMINFD 186 M Sbjct: 325 RMARLR 330 >gi|226325182|ref|ZP_03800700.1| hypothetical protein COPCOM_02974 [Coprococcus comes ATCC 27758] gi|225206530|gb|EEG88884.1| hypothetical protein COPCOM_02974 [Coprococcus comes ATCC 27758] Length = 301 Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 83/187 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ K R A+F + +L ++ ++RAG + A+ + S DP++SE Sbjct: 114 VRSRGKSRKARFDEQLARSLPMVAENMRAGSSIERALRSVGENSDDPLKSELLACAGAMQ 173 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + + ++ M + +++ ++ ++GG+L+++L + + R +++ ++ Sbjct: 174 IDGDIVAALDDMAKRTGSKDLVLLQAAVASHKEVGGSLADSLERIGDTIDARLSLRRHIE 233 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + AS + + + ++ P + DP G +L V F G +++ Sbjct: 234 SETSSVIASMKALIVMLLILFAIIMVGIPQAYDFYTQDPLGIPVLIVVVLFAATGSVIIY 293 Query: 181 LMINFDV 187 M + DV Sbjct: 294 KMADIDV 300 >gi|167562911|ref|ZP_02355827.1| hypothetical protein BoklE_10150 [Burkholderia oklahomensis EO147] Length = 258 Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 83/186 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR + + P+ LD IVR V G V A + + P+R V Sbjct: 73 LASRTQKRRLQIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 132 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + ++E +V+ + + GG L ++ +RD + + ++ Sbjct: 133 SGVEIDRAMVYIAELYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELA 192 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + Sbjct: 193 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQVAGGYWLY 252 Query: 181 LMINFD 186 + Sbjct: 253 RLARLR 258 >gi|156975615|ref|YP_001446522.1| Flp pilus assembly protein TadB [Vibrio harveyi ATCC BAA-1116] gi|156527209|gb|ABU72295.1| hypothetical protein VIBHAR_03348 [Vibrio harveyi ATCC BAA-1116] Length = 301 Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 52/182 (28%), Positives = 94/182 (51%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L KR F FP+AL+I++ +V AG + A + + V EF+ + + LG Sbjct: 116 WLQNKRRLDFEKKFPDALNILMSAVTAGESLMHAFSFVGENMEGEVGREFKEMGDRLKLG 175 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + + R + P E FF+ I GG L LA L RIL D + +++K A+ Sbjct: 176 ENAEKVLLRSCKAFPYPEYIFFTITIRANINRGGQLKNVLARLIRILVDARTLESKRMAM 235 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ SA ++ ++P + +V P +++ ++NDP+G M+L ++G+ V+ L+ Sbjct: 236 TSEARISAKVVAAIPIAFAFMVNQIDPSHIDFILNDPQGRMVLYYVVGSEVLGLFVVWLL 295 Query: 183 IN 184 + Sbjct: 296 VK 297 >gi|167570102|ref|ZP_02362976.1| hypothetical protein BoklC_09676 [Burkholderia oklahomensis C6786] Length = 268 Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 83/186 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR + + P+ LD IVR V G V A + + P+R V Sbjct: 83 LASRTQKRRLQIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 142 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + ++E +V+ + + GG L ++ +RD + + ++ Sbjct: 143 SGVEIDRAMVYIAELYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELA 202 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + Sbjct: 203 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQVAGGYWLY 262 Query: 181 LMINFD 186 + Sbjct: 263 RLARLR 268 >gi|91775992|ref|YP_545748.1| type II secretion system protein [Methylobacillus flagellatus KT] gi|91709979|gb|ABE49907.1| type II secretion system protein [Methylobacillus flagellatus KT] Length = 303 Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 93/181 (51%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +++R + P +D + R++ G V AV + P+R+ RV+ LG Sbjct: 121 RLQRRQRIIVTQIPLFIDQVSRALSTGKSVEGAVRSVTEDMQMPLRAVLDRVVRATDLGA 180 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++++ + ++E+ + I + S G + E L ++ +++R ++ + ++ A++ Sbjct: 181 GFADAMQKAAELHHIKELGLIALAIRISSNYGSSPQEMLKSIVQMIRQQEQAQRELAAMT 240 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E K +AW++ P + ++ +PGY+++++NDP G ++ A A ++G+++ M+ Sbjct: 241 GETKMTAWVLSLTPLLIVGYMFIANPGYIDMMLNDPSGALIFKAALAMQVVGVLIFWRMM 300 Query: 184 N 184 Sbjct: 301 K 301 >gi|307730003|ref|YP_003907227.1| type II secretion system F domain-containing protein [Burkholderia sp. CCGE1003] gi|307584538|gb|ADN57936.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1003] Length = 404 Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 80/186 (43%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 M +R + P+ LD IVR + G V A + + P+R V Sbjct: 218 MSMRASRRRQAIVRQLPSFLDGIVRLITLGNSVPAAFQASLRTTEAPLRECLDHVSRMLR 277 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++S + +E+ V+ + + GG L +S +RD + + ++ Sbjct: 278 SGVEIDRALSHVAVLYGARELELLGAVLRLSVKYGGRADVMLDRMSSFMRDLEQAERELV 337 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + S+W++G LP + + T+P Y + DP G +L +A A L G ++ Sbjct: 338 AMSSETRLSSWVLGMLPIGIGGFLILTNPRYFGSMWFDPGGRQILYLAFALQLTGAYLLY 397 Query: 181 LMINFD 186 + Sbjct: 398 RLARLK 403 >gi|262164952|ref|ZP_06032690.1| flp pilus assembly protein TadB [Vibrio mimicus VM223] gi|262027332|gb|EEY45999.1| flp pilus assembly protein TadB [Vibrio mimicus VM223] Length = 303 Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 53/182 (29%), Positives = 91/182 (50%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L +TAKF +FP+AL+I+ ++ AG + A + Q + V EF+ + E +G Sbjct: 119 KLRAHKTAKFQSNFPDALNILSGALSAGQSIVHAFEYVGKQLDNDVGYEFKFMAERLLIG 178 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 E ++R P E FF++ I + GG L E + ++RI+ D + + K AL Sbjct: 179 EDPDEVLARSAASFPYVEYFFFASTIRINLSRGGQLKEVINRINRIMFDARAVDKKKNAL 238 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA++SA II +LP ++ FTSP N ++ + G + LIG + ++ Sbjct: 239 TSEARSSAKIIAALPVIFLLILKFTSPENYNFVMFEEGGKPIFYYVVISELIGFFCIWMI 298 Query: 183 IN 184 + Sbjct: 299 LR 300 >gi|269216232|ref|ZP_06160086.1| putative bacterial type II secretion system protein F domain protein [Slackia exigua ATCC 700122] gi|269130491|gb|EEZ61569.1| putative bacterial type II secretion system protein F domain protein [Slackia exigua ATCC 700122] Length = 335 Score = 98.3 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 45/186 (24%), Positives = 84/186 (45%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + + P+AL + AGL V A A + ++ P+R F V L Sbjct: 149 SRRRDAELQRMRELVPDALRCMEACFHAGLTVPQAFAEVARETKPPLRDAFSMVSHDMEL 208 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S+ E++ R R L E+SF + + VQ GG+ S + + + ++ ++ Sbjct: 209 GRSVDEALERFRRASSLPELSFVAMALDVQHACGGDASRIVQSAQESVERGIELRRSLRV 268 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + +AK SA ++ +P + ++ PG+M+ G LL AAA + GI ++ Sbjct: 269 QTAQAKLSAQVVSIMPIALLVVLSGIDPGFMDPFFESGAGIALLVCAAAMEIAGIAIVSR 328 Query: 182 MINFDV 187 +++ D+ Sbjct: 329 VLDVDI 334 >gi|296158798|ref|ZP_06841627.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] gi|295891003|gb|EFG70792.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] Length = 356 Score = 98.3 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 84/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KR + + P LD IVR + G V A + + P+R V Sbjct: 170 LTLRVNKRRQQIVRQLPLFLDGIVRLITLGNSVPAAFQAALQTTEAPLRECLDYVSRMLR 229 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++S++ ++E+ V+ + + GG L ++ +RD ++ + ++ Sbjct: 230 TGVEIDRALSQVALIYGVRELELVGAVLRLSVKYGGRADVMLERMASFMRDLEHAERELV 289 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + S+W++ LP + + ++P Y + DP G L+ +A A L G ++ Sbjct: 290 AMSAETRLSSWVLAMLPVGIGGFLILSNPKYFASMWFDPTGRQLVYLAFALQLGGAYLLY 349 Query: 181 LMINFD 186 + N Sbjct: 350 RLANLR 355 >gi|238789151|ref|ZP_04632939.1| Type II secretion system protein F domain protein [Yersinia frederiksenii ATCC 33641] gi|238722683|gb|EEQ14335.1| Type II secretion system protein F domain protein [Yersinia frederiksenii ATCC 33641] Length = 187 Score = 98.3 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 80/184 (43%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 MK K+ + F DFP L +I + +G ++ + + S P+ E + + Sbjct: 1 MKLSRKRHHSLFKKDFPEVLLMINMASGSGASINHVLERCGQEVSGPLGHELVLICRRLN 60 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S + E F T+I + Q GG L E + LS+++ K + K Sbjct: 61 LGESPETVFYDAYQRFNYPEFYFLITIILLNIQQGGQLKELTSRLSQVISKNKTTEQKKS 120 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + + S II ++P S L+YF + + ++P G M+ IGI V+R Sbjct: 121 VLTAQTRMSVNIISAMPVAFSLLLYFIDAKNIESMWDNPIGRMIFFYIITSEAIGIYVIR 180 Query: 181 LMIN 184 M+ Sbjct: 181 KMLR 184 >gi|217978830|ref|YP_002362977.1| type II secretion system protein [Methylocella silvestris BL2] gi|217504206|gb|ACK51615.1| type II secretion system protein [Methylocella silvestris BL2] Length = 319 Score = 98.3 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 104/184 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +K +F+D FP+A+D + R +RAGLP++ AV I ++ P+ + F + + Sbjct: 131 LVRRQRKTERQFMDLFPDAVDTVARMIRAGLPITAAVRTIASEAGAPISTVFAMIADELK 190 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ + +++ + + L + FF+ +++Q GGNL L LS+I+R R+ ++ K + Sbjct: 191 IGVPIEQTLDASSKQIGLADFRFFAVAVALQYSTGGNLMATLEALSQIVRKRRALRLKAK 250 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A + E + +A+ +G +P S ++ PGY+ L DPRG ++L A + + + MR Sbjct: 251 AATGEIRITAYALGGIPVLTSGALFVLQPGYLAPLWTDPRGPVILMAAGGLLFLAYLSMR 310 Query: 181 LMIN 184 +++ Sbjct: 311 MIMR 314 >gi|258624767|ref|ZP_05719698.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603] gi|262173890|ref|ZP_06041567.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451] gi|258582929|gb|EEW07747.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603] gi|261891248|gb|EEY37235.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451] Length = 303 Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 53/182 (29%), Positives = 91/182 (50%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L +TAKF +FP+AL+I+ ++ AG + A + Q + V EF+ + E +G Sbjct: 119 KLRAHKTAKFQSNFPDALNILSGALSAGQSIVHAFEYVGKQLDNDVGYEFKFMAERLLIG 178 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 E ++R P E FF++ I + GG L E + ++RI+ D + + K AL Sbjct: 179 EDPDEVLARSAASFPYVEYFFFASTIRINLSRGGQLKEVINRINRIMFDARAVDKKKNAL 238 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA++SA II +LP ++ FTSP N ++ + G + LIG + ++ Sbjct: 239 TSEARSSAKIIAALPVIFLLILKFTSPENYNFVMFEEGGKPIFYYVVISELIGFFCIWMI 298 Query: 183 IN 184 + Sbjct: 299 LR 300 >gi|297192378|ref|ZP_06909776.1| integral membrane protein [Streptomyces pristinaespiralis ATCC 25486] gi|197723021|gb|EDY66929.1| integral membrane protein [Streptomyces pristinaespiralis ATCC 25486] Length = 312 Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 87/187 (46%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KRT F+ P ++ + +AGL + A+ + V + DP R E RRV + Sbjct: 126 LNWQRAKRTEAFISQLPELTRVLANATQAGLALRTAIGMAVEELDDPAREELRRVADQLA 185 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG SL +++ +V +P +E++ + + + ++ GG + +L NL+ L +RK + +V Sbjct: 186 LGRSLDDALGDLVERLPSRELTVLVSTLILSNRAGGTIVTSLRNLTETLEERKETRREVT 245 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L + K +A + L ++ G + + G + + +A +G +++ Sbjct: 246 TLLSQVKVTAVAVPVLGLGFLLVINGMRDGALEDMTGALGGRVAVLIATGLYALGFILIN 305 Query: 181 LMINFDV 187 + + Sbjct: 306 RLTRVRI 312 >gi|253576285|ref|ZP_04853616.1| type II secretion system protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251844412|gb|EES72429.1| type II secretion system protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 270 Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 79/192 (41%), Gaps = 8/192 (4%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFRRV 55 +L+++R F AL + S+ AG V + + + V E + Sbjct: 80 YLLRRRRENLSLHFKQALYSLSSSLAAGRSVENGFREAIDDLRLLYPDGDNDVMRELAII 139 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 G + E++ R ++++ F+ V + + GG+L E + S ++ ++ + Sbjct: 140 CARMDYGQPIEEALLDFSRRAAMEDIDNFADVFTTCKRSGGDLVEVIRRTSNLIGEKLEI 199 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 ++ + + + A + + P + FTSP YM L + G ++ GVA I Sbjct: 200 TQEISVMIAQKRFEAKAMLAAPVLFLLFMQFTSPDYMRPL-HHGAGLLISGVALLLYAIC 258 Query: 176 IMVMRLMINFDV 187 +M +I+ V Sbjct: 259 AWLMLKIIDIRV 270 >gi|85711970|ref|ZP_01043024.1| Flp pilus assembly protein TadB [Idiomarina baltica OS145] gi|85694156|gb|EAQ32100.1| Flp pilus assembly protein TadB [Idiomarina baltica OS145] Length = 281 Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 89/185 (48%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + + KR P L + +++G+ + +AV + + P+ E +I L Sbjct: 95 RRMRNKRYRALQRQLPMLLMNLSNQLKSGMSMVNAVTSLFDEFEAPLGQEVNELIRQVRL 154 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L +++ R +P+ ++ +++ + GG S+ L L+ L ++ ++ + QA Sbjct: 155 GDDLPTALTDWQRRVPIFSITLVVQALTLGYRNGGQQSQVLRRLAENLGQQQKVRDRQQA 214 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 LS + + AW++ +P + L+ + P + L N G + LGVA LIG M+++ Sbjct: 215 LSAQGRMQAWVLICMPLALFLLLNWMKPTHTAYLTNTLIGQVALGVAIVLTLIGAMMVKR 274 Query: 182 MINFD 186 ++N D Sbjct: 275 ILNTD 279 >gi|258620799|ref|ZP_05715834.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573] gi|258586997|gb|EEW11711.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573] Length = 303 Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 53/182 (29%), Positives = 91/182 (50%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L +TAKF +FP+AL+I+ ++ AG + A + Q + V EF+ + E +G Sbjct: 119 KLRAHKTAKFQSNFPDALNILSGALSAGQSIVHAFEYVGKQLDNDVGYEFKFMAERLLIG 178 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 E ++R P E FF++ I + GG L E + ++RI+ D + + K AL Sbjct: 179 EDPDEVLARSAASFPYVEYFFFASTIRINLSRGGQLKEVINRINRIMFDARAVDKKKNAL 238 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA++SA II +LP ++ FTSP N ++ + G + LIG + ++ Sbjct: 239 TSEARSSAKIIAALPVIFLLILKFTSPENYNFVMFEEGGKPIFYYVVISELIGFFCIWMI 298 Query: 183 IN 184 + Sbjct: 299 LR 300 >gi|83719714|ref|YP_443056.1| hypothetical protein BTH_I2539 [Burkholderia thailandensis E264] gi|83653539|gb|ABC37602.1| membrane protein, putative [Burkholderia thailandensis E264] Length = 336 Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 84/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++KR + + P+ LD IVR V G V A + + P+R V Sbjct: 151 LASRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTDAPLRGCLDHVSRMLR 210 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + ++E +V+ + + GG L ++ +RD + + ++ Sbjct: 211 SGVEIDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 270 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + Sbjct: 271 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPMGRQLVYLAFILQVAGGYWLY 330 Query: 181 LMINFD 186 + Sbjct: 331 RLARLR 336 >gi|91783014|ref|YP_558220.1| putative tight adherence TadB related transmembrane protein [Burkholderia xenovorans LB400] gi|91686968|gb|ABE30168.1| Putative tight adherence TadB related transmembrane protein [Burkholderia xenovorans LB400] Length = 359 Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 84/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KR + + P LD IVR + G V A + + P+R V Sbjct: 173 LTLRVNKRRQQIVRQLPLFLDGIVRLITLGNSVPAAFQAALQTTEAPLRECLDYVSRMLR 232 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++S++ ++E+ V+ + + GG L ++ +RD ++ + ++ Sbjct: 233 TGVEIDRALSQVALIYGVRELELVGAVLRLSVKYGGRADVMLERMASFMRDLEHAERELV 292 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + S+W++ LP + + ++P Y + DP G L+ +A A L G ++ Sbjct: 293 AMSAETRLSSWVLAMLPVGIGGFLILSNPKYFASMWFDPTGRQLVYLAFALQLGGAYLLY 352 Query: 181 LMINFD 186 + N Sbjct: 353 RLANLR 358 >gi|296122065|ref|YP_003629843.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] gi|296014405|gb|ADG67644.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] Length = 285 Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 81/184 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++ R + L P L+ + R+ G V + ++ + P+ E + + Sbjct: 97 LMYVRSSRQNQILGQLPAMLEELARAATTGRSVEQCLQLVAADTPSPLGDELQLCVRRMQ 156 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ + ++++ + L + F + V Q GG+L L LS+ +RDR +++ Sbjct: 157 MGMPMRDAVADLPDRTGLMTLRLFCMTLGVHQQTGGDLVWVLEQLSKTIRDRLQYLGRLR 216 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ ++A+A ++ LP V P Y + L+ G +A +IG + + Sbjct: 217 AMTAASRATALLMVVLPPGVLIFFTLRDPDYFSKLMGSSWGRNGTIIAFTLTMIGTIWVL 276 Query: 181 LMIN 184 ++ Sbjct: 277 RILR 280 >gi|251791987|ref|YP_003006707.1| TadB [Aggregatibacter aphrophilus NJ8700] gi|247533374|gb|ACS96620.1| TadB [Aggregatibacter aphrophilus NJ8700] Length = 294 Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 75/178 (42%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + F FP + I+ + +G + A+ + + EF+ + + +G Sbjct: 114 RNKKTFNAMFPEVIQIMNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRLSIGEDPM 173 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 P +E FF T++ GG + E ++ L R++ D M+ K +A++ EA Sbjct: 174 AVFEDSYSRYPYKEFYFFITIVRTNLNKGGQIREVISRLGRLIADSNKMEKKKKAMTSEA 233 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + SA I+ LP + F P LINDP G +L L G+ ++ ++ Sbjct: 234 RMSAMIVACLPVGFFFFMQFAMPENFEFLINDPSGRYVLYYVFGSELFGMGIIWWLMR 291 >gi|197302281|ref|ZP_03167340.1| hypothetical protein RUMLAC_01008 [Ruminococcus lactaris ATCC 29176] gi|197298712|gb|EDY33253.1| hypothetical protein RUMLAC_01008 [Ruminococcus lactaris ATCC 29176] Length = 197 Score = 97.5 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 83/193 (43%), Gaps = 6/193 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR------SEFRR 54 ++ + K+ +F F +++ I+ +++AG +A+ + E+ Sbjct: 5 LEEMTDKKEEEFRVQFKDSIQIMAGALKAGYSAENAIRETCHDLKPMYKSESRIIKEYEI 64 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 +I + + + + +S + ++V F TV + + GG+ + + +++ ++ Sbjct: 65 MIRKLKIHIPVGQVLSEFAENVEQEDVDNFVTVFTTAQKSGGDSIVIIKDAVKVISEKME 124 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + ++Q + K I+ +PF + + T ++ VL +P G +++ + A Sbjct: 125 TEKEIQTMIASKKLEFEIMSMIPFGMIGYMKLTFGDFLKVLYGNPAGIIVMSICLALYFT 184 Query: 175 GIMVMRLMINFDV 187 + + MI +V Sbjct: 185 AYIWGKKMIKIEV 197 >gi|238762412|ref|ZP_04623383.1| Type II secretion system protein F domain protein [Yersinia kristensenii ATCC 33638] gi|238699397|gb|EEP92143.1| Type II secretion system protein F domain protein [Yersinia kristensenii ATCC 33638] Length = 284 Score = 97.5 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 43/183 (23%), Positives = 81/183 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ K+ F DFP AL +I + +G ++ + + S P+ +EF + + Sbjct: 98 LRLSRKRHHTLFKKDFPEALLMINMAASSGASINQVLERCGQEISGPLGNEFSLICRRLN 157 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S + E F T+ + Q GG L E + LS ++ K + K Sbjct: 158 VGESPEAVFYDSYQRFKHPEFYFLITITLLNLQQGGQLRELTSRLSEVINKNKTTEQKKA 217 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ + + S II +P S L+YF P + + + P G M+ ++GI+++R Sbjct: 218 VMTAQVRMSVNIISIMPIAFSFLLYFLDPTTIESMWDHPIGRMIYYYIITSEIVGIVLIR 277 Query: 181 LMI 183 M+ Sbjct: 278 KML 280 >gi|170732850|ref|YP_001764797.1| type II secretion system protein [Burkholderia cenocepacia MC0-3] gi|169816092|gb|ACA90675.1| type II secretion system protein [Burkholderia cenocepacia MC0-3] Length = 326 Score = 97.5 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 79/186 (42%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I +R K + P+ LD IVR V G V A + + P+R V Sbjct: 141 ITSRISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQSALQTAEMPLRRCLDDVSRMLR 200 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + ++E V+ + + GG L +S +RD + + ++ Sbjct: 201 SGVDIDRAMLHIAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEQAERELS 260 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SAW++ LP V + V TSP Y + ND G L+ +A IG + Sbjct: 261 AMSAETRLSAWVLALLPIAVGSFVIATSPRYFTAMWNDDTGRQLVYLAFVLQAIGGFWLF 320 Query: 181 LMINFD 186 + Sbjct: 321 RLARLR 326 >gi|197336186|ref|YP_002155273.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11] gi|197317676|gb|ACH67123.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11] Length = 305 Score = 97.5 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 45/182 (24%), Positives = 87/182 (47%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L ++ +F + FP+AL+++ +V AG ++ A+A + + V EF+ + E LG Sbjct: 121 WLQEREKKQFNERFPDALNMLSSAVSAGESITHAIAFVGKKLEGDVGKEFKIMGERLQLG 180 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S E + P FF + GG L + ++ L+R++ D + ++ K AL Sbjct: 181 ESPDEVFKKSCVRFPYPAFRFFVITLRANMNRGGQLRDVISRLNRLMFDARAVERKKYAL 240 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ SA I+ + PF ++ F SP ++ G +L IG++++ + Sbjct: 241 TSEARISAKIVCATPFFFLFILQFLSPENYEFVMFHTEGRPILYYVLISEAIGMLIIWGL 300 Query: 183 IN 184 + Sbjct: 301 LK 302 >gi|297581612|ref|ZP_06943534.1| flp pilus assembly protein TadB [Vibrio cholerae RC385] gi|297534019|gb|EFH72858.1| flp pilus assembly protein TadB [Vibrio cholerae RC385] Length = 299 Score = 97.5 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 95/185 (51%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L +KR +F D+ P+ +D ++R++R G P+ I Q F ++++ + Sbjct: 114 QQLQQKRMERFRDELPDIIDGLIRALRVGAPMLAVFQDIANQHQGVTSRLFHQIVDELRV 173 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G ++++ + + MP+ E F + V+S+Q + GG L+ L L LR R + A +Q Sbjct: 174 GRTMADVMKLAAQRMPIAEFRFLTIVLSLQQETGGRLANVLERLGNTLRSRAELNASIQT 233 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ E++ SA ++ +LP V +++ T + N L+ G +++ +L G+ ++R Sbjct: 234 ITSESRNSAKVLAALPVLVMLVLFSTGREHFNFLMATTGGQIVMIYITISILFGLFLIRR 293 Query: 182 MINFD 186 M Sbjct: 294 MTQLK 298 >gi|134282399|ref|ZP_01769104.1| type II secretion system protein [Burkholderia pseudomallei 305] gi|134246437|gb|EBA46526.1| type II secretion system protein [Burkholderia pseudomallei 305] Length = 335 Score = 97.1 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 84/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++KR + + P+ LD IVR V G V A + + P+R V Sbjct: 150 LVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 209 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + ++E +V+ + + GG L ++ +RD + + ++ Sbjct: 210 SGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 269 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + Sbjct: 270 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLY 329 Query: 181 LMINFD 186 + Sbjct: 330 RLARLR 335 >gi|53719506|ref|YP_108492.1| putative fimbriae-related outer membrane protein [Burkholderia pseudomallei K96243] gi|76810037|ref|YP_333344.1| putative fimbriae-related outer membrane protein [Burkholderia pseudomallei 1710b] gi|126438493|ref|YP_001058810.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|126453046|ref|YP_001066061.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|242314637|ref|ZP_04813653.1| type II secretion system protein [Burkholderia pseudomallei 1106b] gi|254188636|ref|ZP_04895147.1| type II secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|254197238|ref|ZP_04903660.1| type II secretion system protein [Burkholderia pseudomallei S13] gi|254259377|ref|ZP_04950431.1| type II secretion system protein [Burkholderia pseudomallei 1710a] gi|254297790|ref|ZP_04965243.1| type II secretion system protein [Burkholderia pseudomallei 406e] gi|52209920|emb|CAH35892.1| putative fimbriae-related outer membrane protein [Burkholderia pseudomallei K96243] gi|76579490|gb|ABA48965.1| putative fimbriae-related outer membrane protein [Burkholderia pseudomallei 1710b] gi|126217986|gb|ABN81492.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|126226688|gb|ABN90228.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|157807876|gb|EDO85046.1| type II secretion system protein [Burkholderia pseudomallei 406e] gi|157936315|gb|EDO91985.1| type II secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|169653979|gb|EDS86672.1| type II secretion system protein [Burkholderia pseudomallei S13] gi|242137876|gb|EES24278.1| type II secretion system protein [Burkholderia pseudomallei 1106b] gi|254218066|gb|EET07450.1| type II secretion system protein [Burkholderia pseudomallei 1710a] Length = 335 Score = 97.1 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 84/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++KR + + P+ LD IVR V G V A + + P+R V Sbjct: 150 LVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 209 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + ++E +V+ + + GG L ++ +RD + + ++ Sbjct: 210 SGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 269 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + Sbjct: 270 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLY 329 Query: 181 LMINFD 186 + Sbjct: 330 RLARLR 335 >gi|167582057|ref|ZP_02374931.1| hypothetical protein BthaT_28197 [Burkholderia thailandensis TXDOH] Length = 261 Score = 97.1 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 84/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++KR + + P+ LD IVR V G V A + + P+R V Sbjct: 76 LASRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTDAPLRGCLDHVSRMLR 135 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + ++E +V+ + + GG L ++ +RD + + ++ Sbjct: 136 SGVEIDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 195 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + Sbjct: 196 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPMGRQLVYLAFILQVAGGYWLY 255 Query: 181 LMINFD 186 + Sbjct: 256 RLARLR 261 >gi|293604634|ref|ZP_06687036.1| type II secretion system protein [Achromobacter piechaudii ATCC 43553] gi|292816965|gb|EFF76044.1| type II secretion system protein [Achromobacter piechaudii ATCC 43553] Length = 272 Score = 97.1 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 101/186 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R +F P AL ++ ++RAG+ ++ + +V QS P+ EF ++ Q Sbjct: 86 VSQLRRRRAHRFEQQLPMALLMLAAAMRAGVALTTGLRHVVEQSGAPLAQEFGLMLREQR 145 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ ++ + MP S + + SQ GGNL+EAL ++++ LR R ++AK+Q Sbjct: 146 LGVPWDAALENLQTRMPGDSTSLVVAAMRIASQTGGNLAEALESIAQTLRARLQLQAKLQ 205 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + + AWI+G+LP + ++ P M +L + P G +L + G++++R Sbjct: 206 ALTSQGRLQAWIVGALPLLLLAVLDQLEPDIMGLLWHTPIGWGVLAILVVLETAGVLLIR 265 Query: 181 LMINFD 186 ++ + Sbjct: 266 RIVRIE 271 >gi|237812070|ref|YP_002896521.1| type II secretion system protein [Burkholderia pseudomallei MSHR346] gi|237505569|gb|ACQ97887.1| type II secretion system protein [Burkholderia pseudomallei MSHR346] Length = 329 Score = 97.1 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 84/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++KR + + P+ LD IVR V G V A + + P+R V Sbjct: 144 LVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 203 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + ++E +V+ + + GG L ++ +RD + + ++ Sbjct: 204 SGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 263 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + Sbjct: 264 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLY 323 Query: 181 LMINFD 186 + Sbjct: 324 RLARLR 329 >gi|251795273|ref|YP_003010004.1| type II secretion system protein [Paenibacillus sp. JDR-2] gi|247542899|gb|ACS99917.1| type II secretion system protein [Paenibacillus sp. JDR-2] Length = 287 Score = 97.1 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 40/193 (20%), Positives = 83/193 (43%), Gaps = 8/193 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFRR 54 L+ +R + F AL + S+ AG V +A + + + EFR Sbjct: 96 SFLLVRRKERLQLQFKEALYSLASSLAAGRSVENAFLATIDDLKLLYPDPNTELLLEFRI 155 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 V G L +++ + + L +++ FS V +V + GG+L E + S+ + ++ Sbjct: 156 VKYRLDNGEPLEQALRSLAKRTHLDDITQFSDVFAVCKRSGGDLVEVMKRTSQTIGEKLE 215 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 +K ++ L + + A I+ ++PF + +P YM L G++LL + + Sbjct: 216 VKQEISVLLAQKRFEARIMMAVPFAFLGFLSAFAPDYMKPLYG-GGGYVLLTIGLVVLSF 274 Query: 175 GIMVMRLMINFDV 187 ++ ++ V Sbjct: 275 CFWLIHRIMQIRV 287 >gi|323525749|ref|YP_004227902.1| Type II secretion system F domain-containing protein [Burkholderia sp. CCGE1001] gi|323382751|gb|ADX54842.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1001] Length = 386 Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 42/185 (22%), Positives = 80/185 (43%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 +R + P+ LD IVR + G V A + + P+R V Sbjct: 201 SMRASRRRQAIVRQLPSFLDGIVRLITLGNSVPAAFQASLQITEAPLRECLDHVSRMLRS 260 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ + ++S + +E+ V+ + + GG L +S +RD ++ + ++ A Sbjct: 261 GVEIDRALSHVAVLYGARELELVGAVLRLSVKYGGRADVMLDRMSSFMRDLEHAERELVA 320 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 +S E + S+W++G LP + + T+P Y + DP G +L +A A L G ++ Sbjct: 321 MSSETRLSSWVLGMLPAGIGGFLILTNPRYFGAMWFDPGGRQILYIAFALQLTGAYLLYR 380 Query: 182 MINFD 186 + Sbjct: 381 LARLK 385 >gi|260914308|ref|ZP_05920777.1| Flp pilus assembly protein TadB [Pasteurella dagmatis ATCC 43325] gi|260631409|gb|EEX49591.1| Flp pilus assembly protein TadB [Pasteurella dagmatis ATCC 43325] Length = 294 Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 81/179 (45%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ F FP + I+ + +G + A+ + + EF+ + + +G Sbjct: 113 RRNHKMFNAMFPEVIQILTAAASSGAGLLQALERCGKDLTGQLGDEFKNIHKRLAIGEDP 172 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 P +E FF T+I GG + E ++ L RI+ D K M+ K +A++ E Sbjct: 173 VTVFEDSYSRYPYKEFYFFITIIRTNLSKGGQIREVISRLGRIIADAKKMEQKKKAMTSE 232 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A+ SA I+ S P + FT P + LINDP G +L LIG++++ ++ Sbjct: 233 ARMSAMIVASFPIAFFFFMQFTMPENFDFLINDPSGRYVLYYVFGSELIGMLIIWWLMR 291 >gi|107022597|ref|YP_620924.1| type II secretion system protein [Burkholderia cenocepacia AU 1054] gi|116689546|ref|YP_835169.1| type II secretion system protein [Burkholderia cenocepacia HI2424] gi|105892786|gb|ABF75951.1| type II secretion system protein [Burkholderia cenocepacia AU 1054] gi|116647635|gb|ABK08276.1| type II secretion system protein [Burkholderia cenocepacia HI2424] Length = 326 Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 79/186 (42%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I +R K + P+ LD IVR V G V A + + P+R V Sbjct: 141 ITSRISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQSALQTAEMPLRRCLDDVSRMLR 200 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + ++E V+ + + GG L +S +RD + + ++ Sbjct: 201 SGVDIDRAMLHIAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEQAERELS 260 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SAW++ LP V + V TSP Y + ND G L+ +A IG + Sbjct: 261 AMSAETRLSAWVLALLPIAVGSFVIATSPRYFTAMWNDDAGRQLVYLAFVLQAIGGFWLF 320 Query: 181 LMINFD 186 + Sbjct: 321 RLARLR 326 >gi|331092046|ref|ZP_08340877.1| hypothetical protein HMPREF9477_01520 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402247|gb|EGG81818.1| hypothetical protein HMPREF9477_01520 [Lachnospiraceae bacterium 2_1_46FAA] Length = 251 Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 78/192 (40%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55 K K+R KF F AL + + G + +A+ + + + EF + Sbjct: 60 KEYAKRRKEKFQKQFKEALQSLRTVLNVGYSIENAIREVKKEMTTLYGEDALITKEFSYL 119 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + + + + ++ + + EV+ F T++S + GG++ L + + + Sbjct: 120 VRQLEMNIPVEQAWKTFADRVEMSEVTHFVTILSTIKRSGGDMIAVLRQTIETICMKLEV 179 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + ++ + + + I+ ++P + + + P +++VL + G +++ V Sbjct: 180 QQEIYTIIVAKQMEFRIMSAIPMGIIVYLKMSFPEFLSVLYQELVGKVVMTVCLLIYFAA 239 Query: 176 IMVMRLMINFDV 187 + ++ +V Sbjct: 240 YQWGKKILEIEV 251 >gi|260365460|ref|ZP_05777997.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030] gi|260877525|ref|ZP_05889880.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034] gi|260897534|ref|ZP_05906030.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466] gi|260901736|ref|ZP_05910131.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037] gi|308087149|gb|EFO36844.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466] gi|308090878|gb|EFO40573.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034] gi|308108899|gb|EFO46439.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037] gi|308114317|gb|EFO51857.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030] Length = 304 Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 87/175 (49%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 +F D+FP+AL+I+ ++ +G + A + Q + V EF+++ E +G + + Sbjct: 127 QRFKDNFPDALNILSGALSSGQSIVHAFEYVGTQLDNEVGEEFKKMSERLLIGEDPDDVL 186 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 +R P E FF+ I + GG L + + ++RI+ + + ++ K AL+ EA+AS Sbjct: 187 ARSAASFPYVEYFFFAATIRINLSRGGQLKDVINRINRIMFEARAIEKKKNALTSEARAS 246 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A II +LP ++ TSP N ++ + G + IG + +++ Sbjct: 247 AKIIAALPVIFIMILKVTSPENYNFVMFEEGGKPIFYYVLVSEAIGFFFIYMILR 301 >gi|59711124|ref|YP_203900.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrio fischeri ES114] gi|59479225|gb|AAW85012.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrio fischeri ES114] Length = 305 Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 87/182 (47%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L +K +F + FP+AL+++ +V AG ++ A+A + + V EF+ + E LG Sbjct: 121 WLQEKEKKQFNERFPDALNMLSSAVSAGESITHAIAFVGKKLEGDVGKEFKIMGERLQLG 180 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S E + P FF + GG L + ++ L+R++ D + ++ K AL Sbjct: 181 ESPDEVFKKSCVRFPYPAFRFFVITLRANMNRGGQLRDVISRLNRLMFDARAVERKKYAL 240 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ SA I+ + PF ++ F SP ++ G +L IG++++ + Sbjct: 241 TSEARISAKIVCATPFFFLFILQFLSPENYEFVMFHAEGRPILYYVLISEAIGMLIIWGL 300 Query: 183 IN 184 + Sbjct: 301 LK 302 >gi|317133735|ref|YP_004089646.1| Type II secretion system F domain [Ruminococcus albus 7] gi|315450197|gb|ADU23760.1| Type II secretion system F domain [Ruminococcus albus 7] Length = 292 Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 45/186 (24%), Positives = 90/186 (48%), Gaps = 2/186 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIET 58 + + KK F + + AL + S+RAG+ + AV + ++ EFR++ Sbjct: 101 VSYTEKKHKKNFEERYARALRQLSSSLRAGMTLQQAVEDLCKCPFIHYEIKKEFRQINSD 160 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 LG S+SE+ M +P +V + I +QS +GG+ +E++ ++ + R ++ + Sbjct: 161 IQLGFSISEAFGHMAERIPTADVKDVVSAIKMQSLVGGSEAESIEIITNNINSRMMLRKE 220 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 ++ L K + + LP + +Y++SP Y L + G ++ +A M+IG + Sbjct: 221 IKTLFASTKMTIIGMDILPAIIILFLYYSSPMYFRPLFSTLIGRLVFVLAIILMVIGSYI 280 Query: 179 MRLMIN 184 R +N Sbjct: 281 DRKFLN 286 >gi|13471028|ref|NP_102597.1| integral membrane protein [Mesorhizobium loti MAFF303099] gi|14021772|dbj|BAB48383.1| probable integral membrane protein [Mesorhizobium loti MAFF303099] Length = 301 Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 51/175 (29%), Positives = 100/175 (57%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 F P AL++I R ++AG PV A+A++ + DP+ +EF + + G L +++ Sbjct: 126 FGMQLPEALELITRGLKAGHPVPVAIAMVSREMPDPIGTEFGVIADEVTYGSDLVSALNS 185 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + +++ F T +S+QS GGNL E L L+ +R+R ++ KV+A+S E + SA+ Sbjct: 186 LFDRVGHEDLPLFITAVSIQSSSGGNLREILDGLALTIRERGKLRRKVRAISTEGRMSAY 245 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 I+ ++P + + PG+ + ++P+ L+G + ++++G ++M M NF Sbjct: 246 ILTAIPALLFAAIMALMPGFYRDVWDEPKTWYLIGGSVTWLMLGNLMMFKMSNFR 300 >gi|302384577|ref|YP_003820399.1| Type II secretion system F domain protein [Clostridium saccharolyticum WM1] gi|302195205|gb|ADL02776.1| Type II secretion system F domain protein [Clostridium saccharolyticum WM1] Length = 245 Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 88/192 (45%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55 L KKR + +F + ++ + AG V +A + V + V EF + Sbjct: 54 SELKKKRLQQLNLEFKEGILLLASFLSAGYSVENAFSASVKELVILYGEEGMVSMEFGHI 113 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + + S+ +++S L +V F+ V + + GG L +++ + ++RD+ + Sbjct: 114 VSQIRINRSVEQALSEFAGRSGLDDVKNFAEVFAAAKRSGGELVSIISHTAAVIRDKMQV 173 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + ++ ++ + I+ +PF + + TSPG+ N++ N G +L+ + A + Sbjct: 174 RQEILTMTASKQFEQKIMTMIPFFIVLYIDMTSPGFFNIMYNTGIGRILMTLCLAVYIGA 233 Query: 176 IMVMRLMINFDV 187 I + R ++ ++ Sbjct: 234 IAIARHIMKIEI 245 >gi|283787696|ref|YP_003367561.1| tight adherence protein B [Citrobacter rodentium ICC168] gi|282951150|emb|CBG90841.1| putative tight adherence protein B [Citrobacter rodentium ICC168] Length = 300 Score = 96.3 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 81/176 (46%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 F F AL+II +V AG + + + S V EF + + +G + Sbjct: 123 RQAFETGFAEALNIIGGAVGAGNSLLHGIEQSGQKVSGIVGEEFTIISQRLEIGEDVESV 182 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + +E FF + + + GG + E +++L++++ + + M + A + E +A Sbjct: 183 FMDSYERLFYREYFFFVIAVLINMRGGGEVKEIVSHLAKLISNARLMDRQKLAKTAEPRA 242 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 S I+ +P + F SP +VL++DP G MLL A L+G+ + MIN Sbjct: 243 SIKILMVIPVGFFFFLKFLSPENFDVLLHDPTGQMLLYYCIASELLGLFWVWTMIN 298 >gi|284029667|ref|YP_003379598.1| type II secretion system protein [Kribbella flavida DSM 17836] gi|283808960|gb|ADB30799.1| type II secretion system protein [Kribbella flavida DSM 17836] Length = 286 Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 3/186 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K +KR A+F + +P+ +D I +VRAGL +S+A+A + + P+R FRR Sbjct: 95 LKSRARKRLAEFRELWPDVVDNIASAVRAGLSLSEALAQVGERGPLPLREPFRRFGADYA 154 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKV 119 +ES+ R+ + + + + GG+L L +LS LRD ++++ Sbjct: 155 STGRFAESLDRLKARLADPVGDRVVEALRIAREVGGGDLGRLLRSLSSFLRDDARTRSEL 214 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ + A + + P+ V L+ F N P G +++G+ AA ++ VM Sbjct: 215 ESRQSWSVNGARVAVAAPWLVLGLLSFQGDVIQR--YNSPVGALVIGIGAAVCVLAYRVM 272 Query: 180 RLMINF 185 + Sbjct: 273 LRIGRL 278 >gi|167620220|ref|ZP_02388851.1| hypothetical protein BthaB_28195 [Burkholderia thailandensis Bt4] Length = 242 Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 84/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++KR + + P+ LD IVR V G V A + + P+R V Sbjct: 57 LASRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTDAPLRGCLDHVSRMLR 116 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + ++E +V+ + + GG L ++ +RD + + ++ Sbjct: 117 SGVEIDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 176 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + Sbjct: 177 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPMGRQLVYLAFILQVAGGYWLY 236 Query: 181 LMINFD 186 + Sbjct: 237 RLARLR 242 >gi|221070077|ref|ZP_03546182.1| type II secretion system protein [Comamonas testosteroni KF-1] gi|220715100|gb|EED70468.1| type II secretion system protein [Comamonas testosteroni KF-1] Length = 322 Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 85/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +K A+ P LD VR V G V A + + DP++S + Sbjct: 133 LYARAQKFRARLTQQLPGFLDNTVRLVTIGNSVQAAFQMAAASTKDPLQSVMEKAASLAR 192 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ L +++ + R L E+ + ++ + + GG + L ++ +RDR+ + + Sbjct: 193 AGMDLENAVAHVARQTRLDELHLLAAILRISVRYGGRVDLLLERVANFMRDREQAEQDLS 252 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + SAW++ LP V L+ + Y + ND G ++ AAA + G++++ Sbjct: 253 AMTAEIRMSAWVLSLLPVAVCCLIISFNASYFLNMWNDASGRNIIWAAAALQVFGVLLLY 312 Query: 181 LMINFD 186 M D Sbjct: 313 RMAKLD 318 >gi|153836331|ref|ZP_01988998.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810] gi|149750233|gb|EDM60978.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810] gi|328470522|gb|EGF41433.1| putative TadB protein [Vibrio parahaemolyticus 10329] Length = 304 Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 87/175 (49%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 +F D+FP+AL+I+ ++ +G + A + Q + V EF+++ E +G + + Sbjct: 127 QRFKDNFPDALNILSGALSSGQSIVHAFEYVGTQLENEVGEEFKKMSERLLIGEDPDDVL 186 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 +R P E FF+ I + GG L + + ++RI+ + + ++ K AL+ EA+AS Sbjct: 187 ARSAASFPYVEYFFFAATIRINLSRGGQLKDVINRINRIMFEARAIEKKKNALTSEARAS 246 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A II +LP ++ TSP N ++ + G + IG + +++ Sbjct: 247 AKIIAALPVIFIMILKVTSPENYNFVMFEEGGKPIFYYVLVSEAIGFFFIYMILR 301 >gi|296133932|ref|YP_003641179.1| Type II secretion system F domain protein [Thermincola sp. JR] gi|296032510|gb|ADG83278.1| Type II secretion system F domain protein [Thermincola potens JR] Length = 278 Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 85/194 (43%), Gaps = 7/194 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFR 53 ++ LI KR A+ F +AL + S+ G + A + + + EF Sbjct: 85 VQDLITKRKAELQLQFKDALYSLTSSLGVGRSLESAFKTALNDLRVLYPDENTYIIKEFG 144 Query: 54 RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 + L + ++ L+++ F+ V+ + + GGNL + + N S IL D+ Sbjct: 145 YICRKIELNEPVETALLDFAERSGLEDIKNFAEVMVICKRTGGNLVQVVKNTSAILSDKI 204 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + +++ L + K I+ +P LV F GYM+ L +G++L+ +A ++ Sbjct: 205 EISQEIELLLTKQKYEQKILNIMPIVFIGLVKFGGSGYMDSLYTSIKGYLLMALALGILI 264 Query: 174 IGIMVMRLMINFDV 187 +V + + + V Sbjct: 265 AASVVSKKIFDIKV 278 >gi|119715489|ref|YP_922454.1| type II secretion system protein [Nocardioides sp. JS614] gi|119536150|gb|ABL80767.1| type II secretion system protein [Nocardioides sp. JS614] Length = 284 Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 78/186 (41%), Gaps = 3/186 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R + + +P A+D + +VRAG+ + DA+A + + +P+R F + Sbjct: 93 VSGRARRRQRELAEVWPEAVDNLTSAVRAGMSLPDALAGLGSRGPEPLRDAFDQFALDYQ 152 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKV 119 + E + R+ + + + ++GG L L NLS LRD ++++ Sbjct: 153 VTGRFGECLDRLKERLADPVGDRVVEGLRIAREVGGGELGRLLRNLSSYLRDDARTRSEL 212 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +A A + + P+ V + F S P G ++L V A ++ +M Sbjct: 213 EARQAWTVNGARLAVASPWLVLLFMSFQSEVIHR--YASPGGVLVLAVGAGACVVAYRLM 270 Query: 180 RLMINF 185 + Sbjct: 271 MRIGRL 276 >gi|67641291|ref|ZP_00440072.1| type II secretion system protein [Burkholderia mallei GB8 horse 4] gi|121598780|ref|YP_993095.1| type II secretion system protein [Burkholderia mallei SAVP1] gi|124386324|ref|YP_001026128.1| hypothetical protein BMA10229_A0120 [Burkholderia mallei NCTC 10229] gi|126449995|ref|YP_001080600.1| type II secretion system protein [Burkholderia mallei NCTC 10247] gi|167002478|ref|ZP_02268268.1| type II secretion system protein [Burkholderia mallei PRL-20] gi|254178697|ref|ZP_04885352.1| type II secretion system protein [Burkholderia mallei ATCC 10399] gi|254206226|ref|ZP_04912578.1| type II secretion system protein [Burkholderia mallei JHU] gi|121227590|gb|ABM50108.1| type II secretion system protein [Burkholderia mallei SAVP1] gi|124294344|gb|ABN03613.1| putative membrane protein [Burkholderia mallei NCTC 10229] gi|126242865|gb|ABO05958.1| type II secretion system protein [Burkholderia mallei NCTC 10247] gi|147753669|gb|EDK60734.1| type II secretion system protein [Burkholderia mallei JHU] gi|160699736|gb|EDP89706.1| type II secretion system protein [Burkholderia mallei ATCC 10399] gi|238522200|gb|EEP85646.1| type II secretion system protein [Burkholderia mallei GB8 horse 4] gi|243061819|gb|EES44005.1| type II secretion system protein [Burkholderia mallei PRL-20] Length = 306 Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 84/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++KR + + P+ LD IVR V G V A + + P+R V Sbjct: 121 LVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 180 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + ++E +V+ + + GG L ++ +RD + + ++ Sbjct: 181 SGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 240 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + Sbjct: 241 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLY 300 Query: 181 LMINFD 186 + Sbjct: 301 RLARLR 306 >gi|206559897|ref|YP_002230661.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] gi|198035938|emb|CAR51830.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] Length = 326 Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 80/186 (43%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I +R K + P+ LD IVR V G V A + + P+R V + Sbjct: 141 ITSRISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQSALQTAEMPLRRCLDDVSQMLR 200 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + ++E V+ + + GG L +S +RD + + ++ Sbjct: 201 SGVEIDRAMLHIAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEQAERELS 260 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SAW++ LP V + V TSP Y + D G L+ +A A IG + Sbjct: 261 AMSAETRLSAWVLALLPIAVGSFVIATSPRYFTAMWGDDNGRQLIYLAFALQAIGGFWLY 320 Query: 181 LMINFD 186 + Sbjct: 321 RLARLR 326 >gi|284989774|ref|YP_003408328.1| Type II secretion system F domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284063019|gb|ADB73957.1| Type II secretion system F domain protein [Geodermatophilus obscurus DSM 43160] Length = 285 Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 71/186 (38%), Gaps = 3/186 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ L KR A + +P +D + +VRAGL + +A++ + + + +R F R Sbjct: 94 VRRLAVKRRADLREVWPEVVDNLASAVRAGLSLPEALSALSTRGPEVLRPPFARFAAEYR 153 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVI-SVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + R+ + + + G +L L LS LR+ +A++ Sbjct: 154 SSGRFGNGLDRLKDDLADPVGDRIVETLRVAREVGGSDLGRVLRTLSSFLREDARARAEL 213 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + +A + + P+ V L+ S + P G +L AA L +M Sbjct: 214 ETRQGWVVQAARLAVAAPWVVLLLLATQSATLEA--YDSPLGTAILLGGAAVCLASYRLM 271 Query: 180 RLMINF 185 + Sbjct: 272 LRIGRL 277 >gi|330873644|gb|EGH07793.1| hypothetical protein PSYMP_04410 [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 295 Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 45/184 (24%), Positives = 95/184 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R + + P LD VRS+++G ++DAV + + P++ R+ Sbjct: 110 VSWRYERRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIELNVQ 169 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+SL +++ E F+ + V + GGN SE + NL +++RDR+ +++ Sbjct: 170 LGVSLPDAVRDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 229 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + +A ++G LP ++ +P Y+ + ND G ++L +A ++G +++ Sbjct: 230 AMTGETRMTAIVLGLLPVSMAGYFLAVNPDYLLHMWNDGSGQIMLSMAFGLQVLGCLMLW 289 Query: 181 LMIN 184 M+ Sbjct: 290 RMLR 293 >gi|257790637|ref|YP_003181243.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|257474534|gb|ACV54854.1| type II secretion system protein [Eggerthella lenta DSM 2243] Length = 296 Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 90/187 (48%), Gaps = 4/187 (2%) Query: 3 HLIKKR---TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 +L +R KF + A+ +I ++RAG V+ A+ + SDP++SEFRR+ Sbjct: 109 YLKVRRDSGKKKFEEQLGQAMPLIASNLRAGSSVAQAIGPVAENMSDPIKSEFRRLTSDI 168 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + E++ ++ +++ F+T + + Q GG+L++ N+ + +R R + + Sbjct: 169 RAGTPVPEALDKVADRTGSRDLRLFATAVDISQQTGGSLADITENVGQTVRARVEARKAI 228 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ + + + I+ LP + + SP + + P G L+ +A + ++M Sbjct: 229 RSKTSLNRIESQIMVGLPVFMMAALLAISPSH-REFYSQPSGWALIALAVVLDTLAYLMM 287 Query: 180 RLMINFD 186 R M + Sbjct: 288 RKMGDVK 294 >gi|310822672|ref|YP_003955030.1| type II secretion system protein f domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|309395744|gb|ADO73203.1| type II secretion system protein F domain protein [Stigmatella aurantiaca DW4/3-1] Length = 281 Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 100/187 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ K+R KF +AL + + +AGL A+ + ++ P+ EF ++ Sbjct: 95 VKYYRKRRIKKFNVQLVDALQAMANAFKAGLTFPQAIEHVAREALPPLSQEFGLFVKEVK 154 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L E++ M + + ++ ++ QLGGN++E +S ++R+R ++ K+ Sbjct: 155 LGVPLEEALINMGKRVGSDDLELVVVSTNIARQLGGNMAEMFETISMVIRERFRLEGKID 214 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + K WI+ S+P + ++ P M +++ G++L+ V A ++GI+++R Sbjct: 215 ALTSQGKLQGWIVASMPAVLGMVLNSMRPDLMEPMMDHMFGYVLVTVIAIMEILGILIIR 274 Query: 181 LMINFDV 187 ++N D+ Sbjct: 275 RIVNIDI 281 >gi|148976303|ref|ZP_01813027.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrionales bacterium SWAT-3] gi|145964397|gb|EDK29652.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrionales bacterium SWAT-3] Length = 302 Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 83/182 (45%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + K + +F + L +I R+V AGL V A+ + + EF + + LG Sbjct: 115 YRRKLQVEEFEKSIISVLGLISRAVSAGLSVPQAIDQVAQNEQGLLGREFSYIRDNLALG 174 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LSL +++ +P +FS + + GG L + L LSR + D + M+ KV++L Sbjct: 175 LSLRDTLEDACIRLPYHSFRYFSVALILNQSNGGQLRDILQGLSRTMHDNRAMRKKVKSL 234 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + +A + LP + + + P + LIN G +L + + G +++ + Sbjct: 235 TSEPRMTALFLSLLPIGLIGSIAWIEPTMADRLINTESGQNVLIYVLSSICFGTLILNSL 294 Query: 183 IN 184 Sbjct: 295 TR 296 >gi|330963435|gb|EGH63695.1| hypothetical protein PSYAC_02057 [Pseudomonas syringae pv. actinidiae str. M302091] Length = 295 Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 45/184 (24%), Positives = 95/184 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R + + P LD VRS+++G ++DAV + + P++ R+ Sbjct: 110 VSWRYERRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIELNVQ 169 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+SL +++ E F+ + V + GGN SE + NL +++RDR+ +++ Sbjct: 170 LGVSLPDAVRDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 229 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + +A ++G LP ++ +P Y+ + ND G ++L +A ++G +++ Sbjct: 230 AMTGETRMTAIVLGLLPVSMAGYFLAVNPDYLLHMWNDGSGQIMLSMAFGLQVLGCLMLW 289 Query: 181 LMIN 184 M+ Sbjct: 290 RMLR 293 >gi|84386793|ref|ZP_00989818.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrio splendidus 12B01] gi|84378321|gb|EAP95179.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrio splendidus 12B01] Length = 304 Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 47/182 (25%), Positives = 83/182 (45%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + K + +F N L +I R+V AGL V A+ + + EF + + LG Sbjct: 117 YRRKMQVEEFEQGIINVLGLISRAVAAGLSVPQAIEQVSETQPGLLGREFSYIRDNLTLG 176 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LSL +S+ +P +FS + + GG L + L +LSR + D + M+ KV++L Sbjct: 177 LSLRQSLDDACVRLPYSSFRYFSVALILNQSNGGQLRDILQSLSRTMHDNRAMRKKVKSL 236 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + +A + LP + +Y P + L N G +L A + G +++ + Sbjct: 237 TSEPRMTALFLSILPLGLLGGIYLMEPAMIVQLFNTESGQRVLTYAIISISSGTLILNAL 296 Query: 183 IN 184 Sbjct: 297 TR 298 >gi|167902895|ref|ZP_02490100.1| type II secretion system protein [Burkholderia pseudomallei NCTC 13177] Length = 264 Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 84/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++KR + + P+ LD IVR V G V A + + P+R V Sbjct: 79 LVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 138 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + ++E +V+ + + GG L ++ +RD + + ++ Sbjct: 139 SGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 198 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + Sbjct: 199 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLY 258 Query: 181 LMINFD 186 + Sbjct: 259 RLARLR 264 >gi|209545601|ref|YP_002277830.1| type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] gi|209533278|gb|ACI53215.1| type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] Length = 317 Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 59/179 (32%), Positives = 108/179 (60%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ AK P+AL +IVRS+R G+P+S A+ ++ ++ P EFR + + +G SL Sbjct: 135 RRYAAKLFQQLPDALGMIVRSLRVGIPLSRALIIVGQEAEYPTADEFRMISQDVAVGKSL 194 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + LQE FF+T++++Q+Q GG L++ LA+ + ++R R + + AL+ E Sbjct: 195 GDTLHNLAERTGLQEYRFFATIMALQAQTGGTLADVLASFADMIRQRIAARKRGHALASE 254 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A+ S +++G +PF + ++ +P YM V + GHMLLGV+A + +G MR ++ Sbjct: 255 ARMSCYVLGGIPFAIGGIMSIINPDYMAVFLTTHMGHMLLGVSALMLGLGFGSMRFIMK 313 >gi|294139874|ref|YP_003555852.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12] gi|293326343|dbj|BAJ01074.1| Flp pilus assembly protein TadB, putative [Shewanella violacea DSS12] Length = 311 Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 47/178 (26%), Positives = 90/178 (50%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 +F FP L I R+V AG+ V A+A + + EF + + +G+SL ++ Sbjct: 133 MKQFDHAFPQVLGQISRAVAAGISVPQAIAQVSEYQQGFLGREFELIRDRLAIGISLKQT 192 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + +P FF+ + + + GG L E L +L R L D +K K+++L+ E + Sbjct: 193 LEQACYRLPYASFHFFTVALILNQENGGQLREVLHSLGRTLHDNGAIKMKIKSLTAEPRM 252 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +A I+ SLP + ++++F +P VL N GH +L + + +G+ ++ ++ Sbjct: 253 TALILASLPLILISIMFFKNPTSFAVLTNTQTGHHVLVYVVSSIALGLGIINMLTKVR 310 >gi|226196404|ref|ZP_03791986.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|225931621|gb|EEH27626.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] Length = 316 Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 84/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++KR + + P+ LD IVR V G V A + + P+R V Sbjct: 131 LVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 190 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + ++E +V+ + + GG L ++ +RD + + ++ Sbjct: 191 SGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 250 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + Sbjct: 251 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLY 310 Query: 181 LMINFD 186 + Sbjct: 311 RLARLR 316 >gi|317403409|gb|EFV83922.1| hypothetical protein HMPREF0005_02048 [Achromobacter xylosoxidans C54] Length = 281 Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 92/176 (52%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 F P AL ++ ++RAG+ + A+ +V Q P+ EF ++ Q LG+ E+++R Sbjct: 106 FEQQLPMALLMLASALRAGVALMPALRQVVAQGGAPLAQEFGLMLREQRLGVPWDEALAR 165 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + M + + + Q GGNL+EAL ++++ L R ++A+++ L+ + + AW Sbjct: 166 LNTRMTAESTTLMVAAMRTAVQTGGNLAEALDSIAQTLFARLQLQARLRTLTAQGRMQAW 225 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 I+G+LP + + P M L + P G +L V G++++R ++ D+ Sbjct: 226 IVGALPVLLLIALDRLEPDIMMPLWHTPAGWTVLAVLGGLETAGVLLIRRIVRIDI 281 >gi|318604218|emb|CBY25716.1| flp pilus assembly protein TadB [Yersinia enterocolitica subsp. palearctica Y11] Length = 293 Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 44/183 (24%), Positives = 82/183 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ K+ F +FP +L +I + +G ++ + + S P+ EF V + Sbjct: 107 LRLSRKRYYRFFKQNFPESLLMINMAASSGASINQILERCGQEISGPLGVEFNLVCRRLN 166 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S R E F T+I + Q GG L E + LS ++ K + K Sbjct: 167 VGESPESVFYDSYRRFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKA 226 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ + + S II +P S L+YF P + + + P G ++ + +IG++V+R Sbjct: 227 VMTAQIRMSVNIISIMPIAFSLLLYFLDPTTIESMWHHPIGKIVYYYISISEIIGMIVIR 286 Query: 181 LMI 183 M+ Sbjct: 287 KML 289 >gi|330862290|emb|CBX72451.1| hypothetical protein YEW_HH31830 [Yersinia enterocolitica W22703] Length = 293 Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 43/183 (23%), Positives = 82/183 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ K+ F +FP +L +I + +G ++ + + S P+ EF V + Sbjct: 107 LRLSRKRYYRFFKQNFPESLLMINMAASSGASINQILERCGQEISGPLGVEFNLVCRRLN 166 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S + E F T+I + Q GG L E + LS ++ K + K Sbjct: 167 VGESPESVFYDSYQRFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKA 226 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ + + S II +P S L+YF P + + + P G ++ + +IG++V+R Sbjct: 227 VMTAQIRMSVNIISIMPIAFSLLLYFLDPTTIESMWHHPIGKIVYYYISISEIIGMIVIR 286 Query: 181 LMI 183 M+ Sbjct: 287 KML 289 >gi|89100215|ref|ZP_01173082.1| putative integral membrane protein [Bacillus sp. NRRL B-14911] gi|89085065|gb|EAR64199.1| putative integral membrane protein [Bacillus sp. NRRL B-14911] Length = 308 Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 96/184 (52%), Gaps = 1/184 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 K T + + A ++ + ++G+ ++ + V+ + + P R EF+ + + LGL Sbjct: 126 RKNKYTEQLNNQLSEACRLLGNATKSGMTITQGLEVVASEINSPAREEFKVLTQNLRLGL 185 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 +++ M + + +E F + + +Q + GGNL++ L +++ L +RK ++ ++ + Sbjct: 186 DFERALAEMEKRIKTREYKLFISALMIQKRSGGNLTKVLYEMAQTLEERKILRQTIKTAT 245 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + ++I+ ++P + ++ G+++++ P G +L+ + M + ++++R + Sbjct: 246 AEQRFVSYILPAMPIFLLFMLNNIMDGFIDLIFTVP-GAILMTIFIIGMAVALILVRAVT 304 Query: 184 NFDV 187 N V Sbjct: 305 NIKV 308 >gi|167919155|ref|ZP_02506246.1| type II secretion system protein [Burkholderia pseudomallei BCC215] Length = 256 Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 84/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++KR + + P+ LD IVR V G V A + + P+R V Sbjct: 71 LVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 130 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + ++E +V+ + + GG L ++ +RD + + ++ Sbjct: 131 SGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 190 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + Sbjct: 191 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLY 250 Query: 181 LMINFD 186 + Sbjct: 251 RLARLR 256 >gi|325275752|ref|ZP_08141630.1| type II secretion system protein [Pseudomonas sp. TJI-51] gi|324099112|gb|EGB97080.1| type II secretion system protein [Pseudomonas sp. TJI-51] Length = 293 Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 98/184 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++ ++ P LD VRS++AG ++DAV + S +P+R+ RV Sbjct: 108 ISWQSRRHMRHVVEQLPGLLDYSVRSLKAGRTLNDAVLGAIDSSREPLRTTLARVRRNVQ 167 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L ++++ + E+ F+ + + + GGN SE + NL +++R+R+ +++ Sbjct: 168 LGVPLEDAMTELAELHQQDELRLFALGLRINQRHGGNASELMENLIKLIREREQGARQLK 227 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + +A I+G+LP + +P Y+ + D G ++L +A A ++G +V+ Sbjct: 228 AMTGETRITAIILGALPLAMVGYFLLANPHYLLAMWRDSSGQLMLLLAFALQVLGCLVLW 287 Query: 181 LMIN 184 M+ Sbjct: 288 RMMR 291 >gi|167587312|ref|ZP_02379700.1| type II secretion system protein [Burkholderia ubonensis Bu] Length = 261 Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 80/186 (43%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I +R + + P+ LD IVR V G V A + + P+R V Sbjct: 76 LVSRIHRRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQAALLTTEAPLRGCLDVVSRMLR 135 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + + +E +V+ + + GG L ++ +RD + + ++ Sbjct: 136 TGVEIDRAMVHIAKVYHTREFELVGSVLRLSVRYGGRADVMLERMAVFMRDLEQAERELV 195 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SAW++ LP + V T+P Y++ + ND G L +A + G + Sbjct: 196 AMSSETRLSAWVLVMLPIAIGGFVIATNPSYLSSMWNDDSGRAYLYLAFIMQIAGGAWLY 255 Query: 181 LMINFD 186 M Sbjct: 256 RMSRLR 261 >gi|317124420|ref|YP_004098532.1| type II secretion system F domain [Intrasporangium calvum DSM 43043] gi|315588508|gb|ADU47805.1| Type II secretion system F domain [Intrasporangium calvum DSM 43043] Length = 291 Score = 95.2 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 75/186 (40%), Gaps = 3/186 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +KR K D +P+A+D I VRAGL + +A+A + + + +R F R E Sbjct: 100 IRMRARKRRGKLRDLWPDAVDNITSGVRAGLALPEALAQLAVRGPEELRPPFARFAEDYR 159 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKV 119 + + R+ M + + + G +L L LS LR+ +A++ Sbjct: 160 ATGRFHDCLDRLKDAMSDPVADRLIESLRIAREVGGSDLGRLLRTLSAFLREDARTRAEL 219 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +A +A + + P+ V ++ P G ++L A ++ +M Sbjct: 220 EARQSWTINAARLAVAAPWVVLAMLALRGGSLQA--YATPTGWLVLAFGAGLCIVAYRLM 277 Query: 180 RLMINF 185 + Sbjct: 278 VWIGRL 283 >gi|226310158|ref|YP_002770052.1| hypothetical protein BBR47_05710 [Brevibacillus brevis NBRC 100599] gi|226093106|dbj|BAH41548.1| conserved hypothetical membrane protein [Brevibacillus brevis NBRC 100599] Length = 306 Score = 95.2 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 90/184 (48%), Gaps = 1/184 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 K + + ++ S+RAGL +S ++++ + + P EF R+ LG+ Sbjct: 124 RRNKYQERLNEQLSEVCRLLANSLRAGLTLSQGISLVAKEMNYPAGDEFSRMARELQLGV 183 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S ++S M + +P +E F+ + +Q + GGNLS+ L ++ L DR+ + +++ ++ Sbjct: 184 SFDRALSDMEKRIPTREFRIFTATLLIQRRAGGNLSQVLQEMAETLEDRRIVNQEIKTMT 243 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + + ++ +P + ++ + G+++ L + +L L+ ++++ + Sbjct: 244 AEQRYVSILVPIMPVALVLMMNTMNKGFIDPLFSGFGLFLLGLFVIG-TLLSYILVKKVT 302 Query: 184 NFDV 187 N V Sbjct: 303 NIKV 306 >gi|117620900|ref|YP_855995.1| Flp pilus assembly protein TadB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562307|gb|ABK39255.1| Flp pilus assembly protein TadB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 294 Score = 95.2 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 95/184 (51%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L ++ +F P +D ++R++R G P++D ++ Q + F ++ + + Sbjct: 109 QQLQQRALEQFRTRLPEVIDGMIRALRVGAPLADIFLLVARQQRGLMSRLFAQMHDELQV 168 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G +++ + + + + E F + V+S+Q + GG LSE LA L LR R+ + A +Q Sbjct: 169 GQPVAQVMQQAAGRVAVAEFQFLTIVLSLQQETGGRLSEVLAQLVETLRARQTLAASIQT 228 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ E++ +A ++ +LP + +++ T + L+ G +LG + + +G+ ++R Sbjct: 229 ITAESRNAAKVLAALPVIILLVLFTTGREHFTYLMTTTSGQWVLGYVSISVAVGLWLIRR 288 Query: 182 MINF 185 + Sbjct: 289 LTRL 292 >gi|260778158|ref|ZP_05887051.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC BAA-450] gi|260606171|gb|EEX32456.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC BAA-450] Length = 301 Score = 94.8 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 83/181 (45%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 KK+ +F + L ++ R+V AGL V A+ + + + EF + + LG+ Sbjct: 116 RRKKQIEEFDTNIVQVLGLVSRAVSAGLSVPQAIEQVANSQTGLLGREFALITDNLALGI 175 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 SL +++ +P + +FS + + GG L E L NLSR + D + M KV++++ Sbjct: 176 SLRQTLDEACTRLPYRTFRYFSVALILNQSNGGQLREILHNLSRTMHDNRAMLKKVKSMT 235 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + +A + LP + +V + +L+ G +L AA + G + + Sbjct: 236 AEPRMTAKFLSLLPLILVAVVAWIDVSLFELLVYTESGQSILIYCAASIAFGGFTLHSLT 295 Query: 184 N 184 Sbjct: 296 K 296 >gi|225386975|ref|ZP_03756739.1| hypothetical protein CLOSTASPAR_00725 [Clostridium asparagiforme DSM 15981] gi|225046987|gb|EEG57233.1| hypothetical protein CLOSTASPAR_00725 [Clostridium asparagiforme DSM 15981] Length = 308 Score = 94.8 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 87/190 (45%), Gaps = 6/190 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ------SSDPVRSEFRRVIE 57 L ++R + +F + + ++ + AG + +AVA + + + EF + Sbjct: 119 LKRQRLCRLNLEFKDGILVLASFLSAGYSIENAVAASGRELTLLYGADGLMAGEFEEMAR 178 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L ++ + L++V+ F+ V + + GG+L E +++ + ++RD+ ++ Sbjct: 179 GLRLNRTVESVFLDLGGRSGLEDVNNFAQVFAAAKRSGGDLVEIISHTAGVIRDKVQVQE 238 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++ ++ I+ +P + + TSPG+ +++ G +++ A I ++ Sbjct: 239 EIHTMTASKAFEQKIMSLVPVLIVLYIDLTSPGFFDIMYRTMAGRLVMSGCLAVYGISLL 298 Query: 178 VMRLMINFDV 187 + R ++ ++ Sbjct: 299 LARRILQVEI 308 >gi|320158387|ref|YP_004190765.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O] gi|319933699|gb|ADV88562.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O] Length = 305 Score = 94.8 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 49/182 (26%), Positives = 90/182 (49%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L + + AKF +DFP+AL+I+ ++ +G + A + Q + V +F+ + E +G Sbjct: 120 KLQQAKAAKFKEDFPDALNILSGALSSGQSIVHAFEYVGNQLQNEVGKQFKLMAERLLMG 179 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + +SR P E FF+ I + GG L E ++ ++RI+ + + + K AL Sbjct: 180 EDPDDVLSRSAASFPYVEYFFFAATIRINLSRGGQLKEVISRINRIMFEARAIDKKKNAL 239 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ SA II LP ++ FTSP N ++ + G + +IG + + + Sbjct: 240 TSEARMSAKIIACLPVVFLLILKFTSPENYNYVMFEEGGKPIFYYVLTSEIIGFICIWFI 299 Query: 183 IN 184 + Sbjct: 300 LR 301 >gi|170701755|ref|ZP_02892691.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] gi|170133338|gb|EDT01730.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] Length = 327 Score = 94.8 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 80/186 (43%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I +R + P+ LD IVR V G V A + + P+R V Sbjct: 142 LVSRIHRRRQMIVRQLPSFLDGIVRLVTLGNSVPAAFQAALQTTEAPLRGCLDHVSRMLR 201 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + +E +V+ + + GG L +S +RD + + +++ Sbjct: 202 TGVEIDRAMMHIANVYHTKEFELVGSVLRLSVRYGGRADIMLDRMSTFMRDLEQAERELE 261 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SAW++ LP + + V T+P Y+ + ND G LL +A G + + Sbjct: 262 AMSSETRLSAWVLVMLPIAIGSFVIATNPLYLQSMWNDYTGRQLLVLAFMLQAAGGIWLY 321 Query: 181 LMINFD 186 M Sbjct: 322 HMAKLR 327 >gi|115351459|ref|YP_773298.1| type II secretion system protein [Burkholderia ambifaria AMMD] gi|115281447|gb|ABI86964.1| type II secretion system protein [Burkholderia ambifaria AMMD] Length = 322 Score = 94.8 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 80/186 (43%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I +R + P+ LD IVR V G V A + + P+R V Sbjct: 137 LVSRIHRRRQMIVRQLPSFLDGIVRLVTLGNSVPAAFQAALQTTEAPLRGCLDHVSRMLR 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + +E +V+ + + GG L +S +RD + + +++ Sbjct: 197 TGVEIDRAMMHIANVYHTKEFELVGSVLRLSVRYGGRADIMLDRMSTFMRDLEQAERELE 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SAW++ LP + + V T+P Y+ + ND G LL +A G + + Sbjct: 257 AMSSETRLSAWVLVMLPIAIGSFVIATNPLYLQSMWNDYTGRQLLVLAFMLQAAGGIWLY 316 Query: 181 LMINFD 186 M Sbjct: 317 HMAKLR 322 >gi|162147494|ref|YP_001601955.1| type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786071|emb|CAP55653.1| putative type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] Length = 319 Score = 94.8 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 58/179 (32%), Positives = 108/179 (60%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ AK P+AL +IVRS+R G+P+S A+ ++ ++ P EFR + + +G +L Sbjct: 137 RRYAAKLFQQLPDALGMIVRSLRVGIPLSRALIIVGQEAEYPTADEFRMISQDVAVGKNL 196 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + LQE FF+T++++Q+Q GG L++ LA+ + ++R R + + AL+ E Sbjct: 197 GDTLHNLAERTGLQEYRFFATIMALQAQTGGTLADVLASFADMIRQRIAARKRGHALASE 256 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A+ S +++G +PF + ++ +P YM V + GHMLLGV+A + +G MR ++ Sbjct: 257 ARMSCYVLGGIPFAIGGIMSIINPDYMAVFLTTHMGHMLLGVSALMLGLGFGSMRFIMK 315 >gi|323486496|ref|ZP_08091819.1| hypothetical protein HMPREF9474_03570 [Clostridium symbiosum WAL-14163] gi|323400199|gb|EGA92574.1| hypothetical protein HMPREF9474_03570 [Clostridium symbiosum WAL-14163] Length = 257 Score = 94.8 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 79/191 (41%), Gaps = 6/191 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRV 55 K L +R + F A+ I+ S+ AG V +A A + + + EF + Sbjct: 66 KELALQRQEELRRQFKEAVLILSSSLGAGYSVENAFAGSLRELEELYGREGMITKEFSYI 125 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + ++ ++ L+E+ FS + +V + G L + + ++ DR + Sbjct: 126 AHQLRMNRTVETLLAEFADRSGLEEIKNFSDIFAVSKRSRGELVSVVNHTVHVISDRLQV 185 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + ++ ++ E + I+ +P+C+ + F+SPG+ + G +++ Sbjct: 186 REEILTMTAEKQFEQKIMNLVPYCIVIYIEFSSPGFFRQMYGTAAGRVVMTGCLLIYCAS 245 Query: 176 IMVMRLMINFD 186 + +++ + Sbjct: 246 CFLAFKILDIE 256 >gi|323694363|ref|ZP_08108536.1| hypothetical protein HMPREF9475_03400 [Clostridium symbiosum WAL-14673] gi|323501603|gb|EGB17492.1| hypothetical protein HMPREF9475_03400 [Clostridium symbiosum WAL-14673] Length = 257 Score = 94.8 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 79/191 (41%), Gaps = 6/191 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRV 55 K L +R + F A+ I+ S+ AG V +A A + + + EF + Sbjct: 66 KELALQRQEELRRQFKEAVLILSSSLGAGYSVENAFAGSLRELEELYGREGMITKEFSYI 125 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + ++ ++ L+E+ FS + +V + G L + + ++ DR + Sbjct: 126 AHQLRMNRTVETLLAEFADRSGLEEIKNFSDIFAVSKRSRGELVSVVNHTVHVISDRLQV 185 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + ++ ++ E + I+ +P+C+ + F+SPG+ + G +++ Sbjct: 186 REEILTMTAEKQFEQKIMNLVPYCIVIYIEFSSPGFFRQMYGTAAGRVVMTGCLLIYCAS 245 Query: 176 IMVMRLMINFD 186 + +++ + Sbjct: 246 CFLSFKILDIE 256 >gi|37676257|ref|NP_936653.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016] gi|37200798|dbj|BAC96623.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016] Length = 305 Score = 94.8 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 49/182 (26%), Positives = 90/182 (49%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L + + AKF +DFP+AL+I+ ++ +G + A + Q + V +F+ + E +G Sbjct: 120 KLQQAKAAKFKEDFPDALNILSGALSSGQSIVHAFEYVGNQLQNEVGKQFKLMAERLLMG 179 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + +SR P E FF+ I + GG L E ++ ++RI+ + + + K AL Sbjct: 180 EDPDDVLSRSAASFPYVEYFFFAATIRINLSRGGQLKEVISRINRIMFEARAIDKKKNAL 239 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ SA II LP ++ FTSP N ++ + G + +IG + + + Sbjct: 240 TSEARMSAKIIACLPVVFLLILKFTSPENYNYVMFEEGGKPIFYYVLTSEIIGFVCIWFI 299 Query: 183 IN 184 + Sbjct: 300 LR 301 >gi|326424176|ref|NP_762075.2| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6] gi|319999559|gb|AAO07065.2| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6] Length = 305 Score = 94.8 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 49/182 (26%), Positives = 90/182 (49%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L + + AKF +DFP+AL+I+ ++ +G + A + Q + V +F+ + E +G Sbjct: 120 KLQQAKAAKFKEDFPDALNILSGALSSGQSIVHAFEYVGNQLQNEVGKQFKLMAERLLMG 179 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + +SR P E FF+ I + GG L E ++ ++RI+ + + + K AL Sbjct: 180 EDPDDVLSRSAASFPYVEYFFFAATIRINLSRGGQLKEVISRINRIMFEARAIDKKKNAL 239 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ SA II LP ++ FTSP N ++ + G + +IG + + + Sbjct: 240 TSEARMSAKIIACLPVVFLLILKFTSPENYNYVMFEEGGKPIFYYVLTSEIIGFICIWFI 299 Query: 183 IN 184 + Sbjct: 300 LR 301 >gi|134295598|ref|YP_001119333.1| type II secretion system protein [Burkholderia vietnamiensis G4] gi|134138755|gb|ABO54498.1| type II secretion system protein [Burkholderia vietnamiensis G4] Length = 324 Score = 94.8 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 84/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R K + P+ LD IVR V G V A + +P+R V Sbjct: 139 LASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTCEEPLRGCLDHVSRMLR 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + + +E +V+ + + GG L ++ +RD + + ++ Sbjct: 199 SGVEIDRAMLHVAKVYRTKEFELLGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELT 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SA+++ LP + + V T+P Y+ + NDP G LL +A + G + + Sbjct: 259 AMSAETRLSAFVLVMLPIAIGSFVVMTNPRYLEGMWNDPSGRTLLMLAFLAQVAGSLWLY 318 Query: 181 LMINFD 186 M Sbjct: 319 RMARLR 324 >gi|33601082|ref|NP_888642.1| hypothetical protein BB2099 [Bordetella bronchiseptica RB50] gi|33575517|emb|CAE32595.1| putative membrane protein [Bordetella bronchiseptica RB50] Length = 281 Score = 94.4 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 88/171 (51%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 P AL + ++RAG ++ A+ +V P+ EF ++ Q +G+S +++R+ R + Sbjct: 111 PGALVAMACALRAGAGIAAALRQLVEHGEAPLAQEFGLLLREQRMGVSFDAALARLARRV 170 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + ++ + + V + GGNL+E L +++ + R ++ +V+AL + + AWI+G+L Sbjct: 171 SFESMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQAWIVGAL 230 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 P + ++ P M L + G L + GI ++R ++ DV Sbjct: 231 PPVLMGVLGRLQPEAMAALWHTLYGWAALALIVVLEGTGIWLIRRIVAIDV 281 >gi|15602713|ref|NP_245785.1| hypothetical protein PM0848 [Pasteurella multocida subsp. multocida str. Pm70] gi|12721157|gb|AAK02932.1| TadB [Pasteurella multocida subsp. multocida str. Pm70] Length = 291 Score = 94.4 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 76/178 (42%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + F FP + I+ + G + ++ + + EF+ + + LG Sbjct: 111 RNQKMFNAMFPEVIQIMNAAATGGAGLLQSLERCGKDLTGQLGEEFKAIHKRLALGEDPM 170 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 P +E FF T+I GG + E + L R++ D K M+ K +A++ EA Sbjct: 171 SVFEDSYSRYPYKEFYFFITIIRTNLSKGGQIREVITRLGRVIADSKKMEQKKKAMTSEA 230 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + SA+I+ S P + F P + L+NDP G +L G++++ ++ Sbjct: 231 RMSAFIVASFPIAFFLFMQFAMPENFDFLLNDPSGRYVLYYVFGSEAFGMLIIWWLMR 288 >gi|187923648|ref|YP_001895290.1| type II secretion system protein [Burkholderia phytofirmans PsJN] gi|187714842|gb|ACD16066.1| type II secretion system protein [Burkholderia phytofirmans PsJN] Length = 342 Score = 94.4 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 85/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KR + + P LD IVR + G V A + + P+R V Sbjct: 156 LTMRVNKRRQQIVRQLPLFLDGIVRLITLGNSVPAAFQAALQTTEAPLRECLDYVSRMLR 215 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++S++ + ++E+ V+ + + GG L ++ +RD ++ + ++ Sbjct: 216 TGVEIDRALSQVAQIYGVRELELVGAVLRLSVKYGGRADVMLERMASFMRDLEHAERELV 275 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + S+W++ LP + + ++P Y + DP G L+ +A ++G ++ Sbjct: 276 AMSSETRLSSWVLAMLPIGIGGFLILSNPKYFASMWFDPTGRQLVYLAFVLQVLGAYLLY 335 Query: 181 LMINFD 186 + N Sbjct: 336 RLANLR 341 >gi|153950598|ref|YP_001399591.1| type II secretion system protein F domain [Yersinia pseudotuberculosis IP 31758] gi|152962093|gb|ABS49554.1| type II secretion system protein F domain protein [Yersinia pseudotuberculosis IP 31758] Length = 291 Score = 94.4 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 76/183 (41%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ K F DFP L +I + +G ++ + + P+ E + + Sbjct: 105 LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 164 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + E F T+I + Q GG L E + LS+I+ +K + K Sbjct: 165 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 224 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ + + S II +P S L+Y P + + P G ++ +IGI ++R Sbjct: 225 VMTAQIRMSVNIISIMPILFSFLLYLLDPTTIEFVWQHPTGRFIIYYIIISEVIGIFIIR 284 Query: 181 LMI 183 M+ Sbjct: 285 KML 287 >gi|262275465|ref|ZP_06053275.1| flp pilus assembly protein TadB [Grimontia hollisae CIP 101886] gi|262220710|gb|EEY72025.1| flp pilus assembly protein TadB [Grimontia hollisae CIP 101886] Length = 308 Score = 94.4 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 45/185 (24%), Positives = 93/185 (50%), Gaps = 1/185 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++++ + F +FP+AL+++ SV AG + A+ + + V EF+R+ E + Sbjct: 121 IRYMDIRTQNAFERNFPDALNMVASSVTAGESLLHAIQYVGSHLDNIVGREFKRMGERLN 180 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S + + P FF + V GG L + L+R+L + ++++ K + Sbjct: 181 IGESTDAVFRKACQRFPTPAFQFFVIAMRVNVNRGGQLRHVIGRLNRVLFNARSIEMKKR 240 Query: 121 ALSMEAKASAWIIGSLPFCVST-LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A++ EA+ S++I+ ++PF ++ SP + ++NDP G LL IG+ ++ Sbjct: 241 AMTAEARMSSYIVCAIPFIFLFGVLRVLSPENYDFVMNDPGGRYLLYYMLTSEAIGMGIV 300 Query: 180 RLMIN 184 ++ Sbjct: 301 FWLMR 305 >gi|257483344|ref|ZP_05637385.1| type II secretion system protein F domain [Pseudomonas syringae pv. tabaci ATCC 11528] gi|298488956|ref|ZP_07006979.1| Flp pilus assembly protein TadB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156454|gb|EFH97551.1| Flp pilus assembly protein TadB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320322733|gb|EFW78826.1| type II secretion system protein F domain [Pseudomonas syringae pv. glycinea str. B076] gi|320330482|gb|EFW86461.1| type II secretion system protein F domain [Pseudomonas syringae pv. glycinea str. race 4] gi|330887978|gb|EGH20639.1| type II secretion system, protein F domain [Pseudomonas syringae pv. mori str. 301020] gi|330989173|gb|EGH87276.1| type II secretion system protein F domain [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012563|gb|EGH92619.1| type II secretion system protein, F domain [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 294 Score = 94.0 bits (232), Expect = 7e-18, Method: Composition-based stats. Identities = 45/184 (24%), Positives = 90/184 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + R + + P LD VRS+++G ++DAV + + P++ R+ Sbjct: 109 VSWRYEVRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIERNVQ 168 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+SL ++ E F+ + V + GGN SE + NL +++RDR+ +++ Sbjct: 169 LGVSLPDAARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 228 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + +A ++ LP ++ +P Y+ + ND G ++L +A G +V+ Sbjct: 229 AMTGETRMTALVLALLPVGMAGYFLTVNPSYLLHMWNDDSGKIMLSMAFVLQATGCVVLW 288 Query: 181 LMIN 184 M+ Sbjct: 289 RMLR 292 >gi|303238718|ref|ZP_07325251.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] gi|302593837|gb|EFL63552.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] Length = 264 Score = 94.0 bits (232), Expect = 7e-18, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 86/193 (44%), Gaps = 7/193 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-------SSDPVRSEFRR 54 K +I+KR + F + L + S+ AG + + ++ S+ + E Sbjct: 72 KEIIEKRKNELNLQFRDMLYSLSSSLSAGKSIESSFKEVLKDLSIIYPDSNSFIIKEVEY 131 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 ++ + ++ ++ L+++ F V+ + GGN+ + + N S I+ D+ Sbjct: 132 IVRKIEMNETIESALEDFAARSHLEDIENFVDVLQTSKRTGGNIVDIIKNSSNIISDKIE 191 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 +K ++ L K I+ +P + + ++ YM + +D RG +++ ++ A ++I Sbjct: 192 VKEEIDTLLASRKFEQKILALMPVMLILFLSLSTGDYMYPVFHDLRGRLVMTLSLALIII 251 Query: 175 GIMVMRLMINFDV 187 + + ++N V Sbjct: 252 AYFISKKIMNIKV 264 >gi|315650391|ref|ZP_07903462.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] gi|315487318|gb|EFU77629.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] Length = 269 Score = 94.0 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 89/192 (46%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55 K LI ++ + L +F A+ I+ + AG + ++V + + + + EF + Sbjct: 78 KELIVEKKRRLLIEFKEAVMILSSLLNAGYSLENSVKEALVELRLLYVKDNLIIKEFEYI 137 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + ++ +S+ + + +++ F+ V+ + + GG L +A+ ++ D+ + Sbjct: 138 CQLIYMNISVERAFDDLAYRSHCEDIRSFAKVLRIAKRSGGELESIIAHTVSVIGDKVRI 197 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K ++ ++ + ++ LP + + F+SPG+ N++ G M + V L Sbjct: 198 KEEIITMTAAKRFEQKVMNILPLLIVLYIDFSSPGFFNIMYTTIIGRMCMSVGLTVYLFA 257 Query: 176 IMVMRLMINFDV 187 I + + ++N +V Sbjct: 258 IYISKRLLNIEV 269 >gi|331014705|gb|EGH94761.1| hypothetical protein PLA106_02335 [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 295 Score = 94.0 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 44/184 (23%), Positives = 95/184 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R + + P LD VRS+++G ++DAV + + P++ R+ Sbjct: 110 VSWRYERRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIELNVQ 169 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+SL +++ E F+ + V + GGN SE + NL +++RDR+ +++ Sbjct: 170 LGVSLPDAVRDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 229 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + +A ++G LP ++ +P Y+ + +D G ++L +A ++G +++ Sbjct: 230 AMTGETRMTAIVLGLLPVSMAGYFLAVNPDYLLQMWSDDSGRIMLSMAFGLQILGCLMLW 289 Query: 181 LMIN 184 M+ Sbjct: 290 RMLR 293 >gi|210614118|ref|ZP_03290054.1| hypothetical protein CLONEX_02267 [Clostridium nexile DSM 1787] gi|210150819|gb|EEA81827.1| hypothetical protein CLONEX_02267 [Clostridium nexile DSM 1787] Length = 220 Score = 94.0 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 86/192 (44%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55 K I+KR F F A+ + ++ G V +A+ + + + EFR + Sbjct: 29 KQWIEKRKNVFQLQFKEAVQSLATALNVGYSVENAMREALKDLQIIYKKDELIVREFRYM 88 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + + +++ + + + ++V F TV + + GG++ + N + + ++ ++ Sbjct: 89 VRQLDVNVTMEKVLQEFSQRTGEEDVQTFVTVFVMAKRSGGDMIAIIRNTVQQMSEKADI 148 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + ++ + K ++ ++PF + + F+ P +M VL + G +++ + +I Sbjct: 149 RREIGTIIASKKLEFKVMSAIPFGMICYMKFSFPEFMGVLYGNAAGVVIMTICFLGYVIA 208 Query: 176 IMVMRLMINFDV 187 + + ++ +V Sbjct: 209 YEIGKRIVEIEV 220 >gi|330969403|gb|EGH69469.1| type II secretion system protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 294 Score = 94.0 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 92/184 (50%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + R + + P LD VRS+++G ++DAV + + P++ R+ Sbjct: 109 VSWRYEVRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQ 168 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+SL ++ E F+ + V + GGN SE + NL +++RDR+ +++ Sbjct: 169 LGVSLPDAARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 228 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + +A ++ LP ++ +P Y+ + +D G ++L VA A + G +V+ Sbjct: 229 AMTGETRMTAVVLALLPISMAGYFLAVNPSYLLHMWDDESGKIMLSVAFALQVTGCVVLW 288 Query: 181 LMIN 184 M+ Sbjct: 289 RMLR 292 >gi|283777929|ref|YP_003368684.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283436382|gb|ADB14824.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 318 Score = 94.0 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 52/175 (29%), Positives = 92/175 (52%), Gaps = 3/175 (1%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 P+A D++ R++RAG V A VI + P++ EF E QHLG+ ++ Sbjct: 146 LARQLPDAFDVMSRALRAGQTVPAAFQVIATDFNSPLKEEFAHCYEQQHLGIERDVALRD 205 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + R + E+ F + + + GGNL+E L NL+ +LR R + +++AL+ E + A Sbjct: 206 LARRTSVMELQIFVVALIMHGKTGGNLAELLGNLALLLRKRGKLHDRIRALTGEGRMQAV 265 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 ++ +LP + ++Y + Y VL++ P MLL LIG + +R +I+ + Sbjct: 266 VLIALPAVIFGVMYVMNREYAQVLLDRP---MLLIGCGISQLIGALCIRKIIDIE 317 >gi|302185192|ref|ZP_07261865.1| type II secretion system protein [Pseudomonas syringae pv. syringae 642] Length = 294 Score = 94.0 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 92/184 (50%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + R + + P LD VRS+++G ++DAV + + P++ R+ Sbjct: 109 VSWRYEVRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQ 168 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+SL ++ E F+ + V + GGN SE + NL +++RDR+ +++ Sbjct: 169 LGVSLPDAARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 228 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + +A ++ LP ++ +P Y+ + +D G ++L VA A + G +V+ Sbjct: 229 AMTGETRMTAVVLALLPISMAGYFLAVNPSYLLHMWDDESGKIMLSVAFALQVTGCVVLW 288 Query: 181 LMIN 184 M+ Sbjct: 289 RMLR 292 >gi|167816006|ref|ZP_02447686.1| type II secretion system protein [Burkholderia pseudomallei 91] Length = 206 Score = 94.0 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 84/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++KR + + P+ LD IVR V G V A + + P+R V Sbjct: 21 LVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 80 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + ++E +V+ + + GG L ++ +RD + + ++ Sbjct: 81 SGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 140 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + Sbjct: 141 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLY 200 Query: 181 LMINFD 186 + Sbjct: 201 RLARLR 206 >gi|325518468|gb|EGC98167.1| type II secretion system protein [Burkholderia sp. TJI49] Length = 257 Score = 94.0 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 84/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R K + P+ LD IVR V G V A + + +P+R V Sbjct: 72 LASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTTEEPLRGCLDHVSRMLR 131 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + + +E +V+ + + GG L ++ +RD + + ++ Sbjct: 132 TGVEIDRAMLHIAKIYRTEEFELLGSVLRLSVKYGGRADVMLERMAIFMRDLEQAERELT 191 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SA+++ LP + + V T+P Y+ + ND G +LL A L G + + Sbjct: 192 AMSAETRLSAFVLVMLPIAIGSFVVMTNPTYLQGMWNDSLGRLLLMFAFLMQLAGSVWLY 251 Query: 181 LMINFD 186 M Sbjct: 252 RMARLR 257 >gi|71733377|ref|YP_276553.1| type II secretion system protein F domain [Pseudomonas syringae pv. phaseolicola 1448A] gi|71553930|gb|AAZ33141.1| type II secretion system protein F domain protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 294 Score = 94.0 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 45/184 (24%), Positives = 90/184 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + R + + P LD VRS+++G ++DAV + + P++ R+ Sbjct: 109 VSWRYEVRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLQGIEATDQPLKDGMSRIERNVQ 168 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+SL ++ E F+ + V + GGN SE + NL +++RDR+ +++ Sbjct: 169 LGVSLPDAARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 228 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + +A ++ LP ++ +P Y+ + ND G ++L +A G +V+ Sbjct: 229 AMTGETRMTALVLALLPVGMAGYFLTVNPSYLLHMWNDDSGKIMLSMAFVLQATGCVVLW 288 Query: 181 LMIN 184 M+ Sbjct: 289 RMLR 292 >gi|330895622|gb|EGH27929.1| type II secretion system protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 293 Score = 94.0 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 45/184 (24%), Positives = 90/184 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + R + + P LD VRS+++G ++DAV + + P++ R+ Sbjct: 108 VSWRYEVRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQ 167 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+SL ++ E F+ + V + GGN SE + NL +++RDR+ +++ Sbjct: 168 LGVSLPDAARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 227 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + +A ++ LP ++ +P Y+ + +D G ++L A A G +V+ Sbjct: 228 AMTGETRMTAVVLALLPISMAGYFLAVNPNYLLHMWDDESGKIMLSAAFALQATGCVVLW 287 Query: 181 LMIN 184 M+ Sbjct: 288 RMLR 291 >gi|331086802|ref|ZP_08335879.1| hypothetical protein HMPREF0987_02182 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409968|gb|EGG89403.1| hypothetical protein HMPREF0987_02182 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 251 Score = 94.0 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 76/192 (39%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55 K IKK+ +F F +L + ++ G +A+ + E+ + Sbjct: 60 KQYIKKQQQEFCAQFKMSLQSMSSALNVGYSAENALKETAKDLSLIYKKDTRIMREYTYM 119 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 I ++ + L + + ++VS F +V + GG+ E + N + + ++ + Sbjct: 120 IHQLNMNVPLEQIWKEFADRVGQEDVSNFVSVFVAAKRAGGDSIEMIRNAVKQICEKIEV 179 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K +++ K ++ +PF + + P ++ VL + G ++ V A Sbjct: 180 KREIEMTMSAKKLEFQVMSVVPFGIIFYMRIAFPDFVEVLYRNFLGIFVMTVCLAVYAGA 239 Query: 176 IMVMRLMINFDV 187 + + MI +V Sbjct: 240 FYMGKRMIEIEV 251 >gi|167719784|ref|ZP_02403020.1| type II secretion system protein [Burkholderia pseudomallei DM98] Length = 220 Score = 94.0 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 84/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++KR + + P+ LD IVR V G V A + + P+R V Sbjct: 35 LVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 94 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + ++E +V+ + + GG L ++ +RD + + ++ Sbjct: 95 SGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 154 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + Sbjct: 155 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLY 214 Query: 181 LMINFD 186 + Sbjct: 215 RLARLR 220 >gi|283778865|ref|YP_003369620.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283437318|gb|ADB15760.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 300 Score = 94.0 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 42/178 (23%), Positives = 84/178 (47%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R P AL + +VR+G +S+A ++ + P+ EF + LG + Sbjct: 121 RVGTMQKQMPQALQAVADAVRSGQTLSEACQLVSKEIKGPLGQEFAYAHQQLELGHAPVS 180 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++RM +PL E F+T + V + GGNLS +S RDR++++ + A++ ++ Sbjct: 181 VMNRMATRVPLTEFRVFATAVVVHRRAGGNLSLLTERMSHSARDRQDVRNHLMAVTSGSR 240 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 SA+ + + + P Y+ + +P+G LL +A ++G + + ++ Sbjct: 241 LSAFGMVLGGIIAVAFLTWLEPDYVRAFLENPKGPWLLFIAFMLQVVGAIWVWRILKV 298 >gi|325963897|ref|YP_004241803.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans Sphe3] gi|323469984|gb|ADX73669.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans Sphe3] Length = 285 Score = 94.0 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 78/183 (42%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ KKR+A +P+ +D + ++RAGLP+ +A+ + + + +R FR Sbjct: 94 LRWRAKKRSALLRQLWPDVVDHLRSAIRAGLPLPEALIQLGDKGPEELRHVFRDFGADYR 153 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKV 119 G S++++ + + + + G +L + L L+ LR+ ++++ Sbjct: 154 AGGQFDASLNKLKHRLADPVADRIVEALRLTREVGGSDLGKLLGTLAEFLRESARTRSEL 213 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +A +A + + P+ V L+ T P + N G +L L+ +M Sbjct: 214 EARQSWTINAARLAVAAPWIVMILL-ATRPEAVQA-YNTAAGAAVLVGGLVVSLVCYSIM 271 Query: 180 RLM 182 + Sbjct: 272 LRI 274 >gi|22127362|ref|NP_670785.1| hypothetical protein y3488 [Yersinia pestis KIM 10] gi|21960447|gb|AAM87036.1|AE013952_3 hypothetical [Yersinia pestis KIM 10] Length = 270 Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 77/183 (42%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ K F DFP L +I + +G ++ + + P+ E + + Sbjct: 84 LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 143 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + E F T+I + Q GG L E + LS+I+ +K + K Sbjct: 144 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 203 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ + + S II +P S L+Y P + + P G ++ +IGI+++R Sbjct: 204 VMTAQIRMSVNIISIMPMLFSFLLYLLDPTTIEFVWQHPTGRFIIYYIIISEVIGILIIR 263 Query: 181 LMI 183 M+ Sbjct: 264 KML 266 >gi|217423568|ref|ZP_03455069.1| type II secretion system protein [Burkholderia pseudomallei 576] gi|217393426|gb|EEC33447.1| type II secretion system protein [Burkholderia pseudomallei 576] Length = 237 Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 84/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++KR + + P+ LD IVR V G V A + + P+R V Sbjct: 52 LVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 111 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + ++E +V+ + + GG L ++ +RD + + ++ Sbjct: 112 SGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 171 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + Sbjct: 172 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLY 231 Query: 181 LMINFD 186 + Sbjct: 232 RLARLR 237 >gi|167738782|ref|ZP_02411556.1| type II secretion system protein [Burkholderia pseudomallei 14] gi|167824381|ref|ZP_02455852.1| type II secretion system protein [Burkholderia pseudomallei 9] gi|167911132|ref|ZP_02498223.1| type II secretion system protein [Burkholderia pseudomallei 112] Length = 211 Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 84/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++KR + + P+ LD IVR V G V A + + P+R V Sbjct: 26 LVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 85 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + ++E +V+ + + GG L ++ +RD + + ++ Sbjct: 86 SGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 145 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + Sbjct: 146 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLY 205 Query: 181 LMINFD 186 + Sbjct: 206 RLARLR 211 >gi|149909166|ref|ZP_01897823.1| TadB-like protein involved in pilus formation and/or proteinsecretion [Moritella sp. PE36] gi|149807690|gb|EDM67636.1| TadB-like protein involved in pilus formation and/or proteinsecretion [Moritella sp. PE36] Length = 311 Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 50/183 (27%), Positives = 93/183 (50%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 + ++ +F F L + R+V AG+ V A+A I + EF + + +G+ Sbjct: 128 MRTRQHREFDAAFTQVLGQMSRAVSAGISVPQAIAQIADYQQGMLGREFSLIRDKLEIGI 187 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L +++++ +P FFS + + + GG L E L +LSR + D +K K+++L+ Sbjct: 188 GLKQALNQASIRLPYVSFHFFSVALILNEENGGQLREVLHSLSRTVHDNAAIKMKIRSLT 247 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + +A I+ SLP + ++YF +P L PRGH++LG M +G+ ++ L+ Sbjct: 248 AEPRMTAAILASLPILLIGVMYFKNPSAFITLTQSPRGHLVLGYVVTSMALGMAIIHLLT 307 Query: 184 NFD 186 Sbjct: 308 KVR 310 >gi|167836790|ref|ZP_02463673.1| hypothetical protein Bpse38_09905 [Burkholderia thailandensis MSMB43] Length = 221 Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 84/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++KR + + P+ LD IVR V G V A + + P+R V Sbjct: 36 LVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 95 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + ++E +V+ + + GG L ++ +RD + + ++ Sbjct: 96 SGVEIDRAMVYVATLYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 155 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + Sbjct: 156 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPMGRQLVYLAFILQVAGGYWLY 215 Query: 181 LMINFD 186 + Sbjct: 216 RLARLR 221 >gi|167894488|ref|ZP_02481890.1| type II secretion system protein [Burkholderia pseudomallei 7894] Length = 215 Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 84/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++KR + + P+ LD IVR V G V A + + P+R V Sbjct: 30 LVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 89 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + ++E +V+ + + GG L ++ +RD + + ++ Sbjct: 90 SGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 149 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + Sbjct: 150 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLY 209 Query: 181 LMINFD 186 + Sbjct: 210 RLARLR 215 >gi|166033070|ref|ZP_02235899.1| hypothetical protein DORFOR_02792 [Dorea formicigenerans ATCC 27755] gi|166027427|gb|EDR46184.1| hypothetical protein DORFOR_02792 [Dorea formicigenerans ATCC 27755] Length = 230 Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 76/193 (39%), Gaps = 6/193 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRR 54 + IK++ +FL F + + G V +AV + + + E Sbjct: 38 LDECIKRKEQEFLVQFKELIQTFSSLLNTGYSVENAVKESLKEMQIFYSDDAAILRELEI 97 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 ++ + + + +++ + L +V F+ V + GGNL + N + + D+ + Sbjct: 98 MVRQIRVQVPVEQAVEELSERTKLPDVESFAGVFVTAKRSGGNLMSIIRNTADQIGDKID 157 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 +K ++ + K ++ +PF + + + P +M L + G ++ L Sbjct: 158 VKREIDTMLAAKKYEFQVMSVIPFGIVLYMTVSFPEFMGNLYGNIAGRGVMTGCLIIYLG 217 Query: 175 GIMVMRLMINFDV 187 + R +I +V Sbjct: 218 AYGLGRKIIEIEV 230 >gi|325663220|ref|ZP_08151670.1| hypothetical protein HMPREF0490_02411 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470674|gb|EGC73904.1| hypothetical protein HMPREF0490_02411 [Lachnospiraceae bacterium 4_1_37FAA] Length = 251 Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 76/192 (39%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55 K IKK+ +F F +L + ++ G +A+ + E+ + Sbjct: 60 KQYIKKQQQEFCAQFKMSLQSMSSALNVGYSAENALKETAKDLSLIYKKDTRIMREYTYM 119 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 I ++ + L + + ++VS F +V + GG+ E + N + + ++ + Sbjct: 120 IHQLNMNVPLEQIWKEFADRVGQEDVSNFVSVFVAAKRAGGDSIEMIRNAVKQICEKIEV 179 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K +++ K ++ +PF + + P ++ VL + G ++ V A Sbjct: 180 KREIEMTMSAKKLEFQVMSVVPFGIIFYMRIAFPDFVEVLYRNFLGIFVMTVCLAVYAGA 239 Query: 176 IMVMRLMINFDV 187 + + MI +V Sbjct: 240 FYMGKKMIEIEV 251 >gi|289625309|ref|ZP_06458263.1| type II secretion system protein F domain [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647834|ref|ZP_06479177.1| type II secretion system protein F domain [Pseudomonas syringae pv. aesculi str. 2250] gi|330867143|gb|EGH01852.1| type II secretion system, protein F domain [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330871031|gb|EGH05740.1| type II secretion system, protein F domain [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 294 Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 45/184 (24%), Positives = 90/184 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + R + + P LD VRS+++G ++DAV + + P++ R+ Sbjct: 109 VSWRYEVRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIERNVQ 168 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+SL ++ E F+ + V + GGN SE + NL +++RDR+ +++ Sbjct: 169 LGVSLPDAARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 228 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + +A ++ LP ++ +P Y+ + ND G ++L +A G +V+ Sbjct: 229 AMTGETRMTALVLALLPVGMAGYFLTVNPSYLLHMWNDDSGKIMLSMAFVLQATGCVVLW 288 Query: 181 LMIN 184 M+ Sbjct: 289 RMLR 292 >gi|168699470|ref|ZP_02731747.1| hypothetical protein GobsU_08112 [Gemmata obscuriglobus UQM 2246] Length = 330 Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 86/177 (48%), Gaps = 3/177 (1%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 K+L A +++ R +R G V++A VG DP+ EF R + G+ + Sbjct: 156 EKYLRQIAGAFELMARVIRTGQSVTEAFRAAVGAFDDPLAEEFGRCVHQIEHGIRPEAAF 215 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 M + E+ F +++Q Q GGNLSE L L+ ++R R ++ K++AL+ E + Sbjct: 216 REMSDRADVLELRIFVVAMTIQRQTGGNLSEVLDRLAGVVRARLRVRQKIRALTAEGRMQ 275 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + + LP V ++YF + Y L+ LL + +G + +R ++NF+ Sbjct: 276 SRTLTVLPVVVFAMMYFLNRPYAEGLLAQ---WRLLLGTVTCVAVGTLWIRNIMNFE 329 >gi|167845913|ref|ZP_02471421.1| type II secretion system protein [Burkholderia pseudomallei B7210] Length = 216 Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 84/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++KR + + P+ LD IVR V G V A + + P+R V Sbjct: 31 LVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 90 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + ++E +V+ + + GG L ++ +RD + + ++ Sbjct: 91 SGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 150 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + Sbjct: 151 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLY 210 Query: 181 LMINFD 186 + Sbjct: 211 RLARLR 216 >gi|123443824|ref|YP_001007795.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090785|emb|CAL13667.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 280 Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 1/182 (0%) Query: 3 HLIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 L +KR +F FP +L +I + +G ++ + + S P+ EF V ++ Sbjct: 95 RLSRKRYHRFFKQNFPESLLMINMAASSGASINQILERCGQEISGPLGIEFNLVCRRLNV 154 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S + E F T+I + Q GG L E + LS ++ K + K Sbjct: 155 GESPESVFYDSYQRFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAV 214 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ + + S II +P S L+YF P + + + P G ++ LIG++V+R Sbjct: 215 MTAQIRMSVNIISIMPIAFSLLLYFLDPITIESMWHHPIGKIVYYYIITSELIGMIVIRK 274 Query: 182 MI 183 M+ Sbjct: 275 ML 276 >gi|225570081|ref|ZP_03779106.1| hypothetical protein CLOHYLEM_06177 [Clostridium hylemonae DSM 15053] gi|225161551|gb|EEG74170.1| hypothetical protein CLOHYLEM_06177 [Clostridium hylemonae DSM 15053] Length = 251 Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 83/192 (43%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55 K ++++++ F F +A+ + ++ G V +A + +D +R E + Sbjct: 60 KECLRRKSSSFQLQFKDAIQSLSSALSTGYSVENAWKEAEKELKLLYRENDRIRKELHII 119 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + + + + + + + ++V F+ V + + GG++ + N + + D+ + Sbjct: 120 VSQIRVNVPMEQIMEEFAERVRQEDVRNFTAVFAAAKKSGGDMVAIIRNTAGQIGDKVEV 179 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K ++ + + ++ ++P+ + + + P +M L + G ++ V A + Sbjct: 180 KREIDTILASREYEFKVMSAVPYVIIGYMSLSFPEFMQNLYGNVLGTGVMTVCLAAYIGA 239 Query: 176 IMVMRLMINFDV 187 + + +I +V Sbjct: 240 CCLGQKIIRIEV 251 >gi|257064724|ref|YP_003144396.1| Flp pilus assembly protein TadB [Slackia heliotrinireducens DSM 20476] gi|256792377|gb|ACV23047.1| Flp pilus assembly protein TadB [Slackia heliotrinireducens DSM 20476] Length = 332 Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 84/185 (45%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 H + + + P+AL + +AGL + A ++ P+ F +V L Sbjct: 146 SHAADEEQNRLRELVPDALRCMESCFQAGLSLPQTFAETARETEPPLSQTFAQVSHDIEL 205 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S+ E++ R L E++F + + VQ GG+ + L + ++ ++ Sbjct: 206 GHSVDEALDRFRLGSGLPELAFVAVALDVQYVSGGDATSVLRIAQDSVDHALELRRTLRV 265 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + +AK SA I+ ++P + ++ SP + N G LL +AA+ + GI+++R Sbjct: 266 QTAQAKLSAQIVSAMPLVLVGVLSLVSPHFFNPFFETGTGLALLAMAASMLAGGILIVRR 325 Query: 182 MINFD 186 M+ D Sbjct: 326 MLAVD 330 >gi|78066134|ref|YP_368903.1| Flp pilus assembly protein TadB [Burkholderia sp. 383] gi|77966879|gb|ABB08259.1| Flp pilus assembly protein TadB [Burkholderia sp. 383] Length = 326 Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 45/186 (24%), Positives = 81/186 (43%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I +R K + P+ LD IVR V G V A + + P+R V Sbjct: 141 ITSRISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQSTLQTAEMPLRRCLDDVSRMLR 200 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + ++E V+ + + GG L +S +RD ++ + ++ Sbjct: 201 SGVEIDRAMLHVAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEHAERELS 260 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SAW++ +P V + V TSP Y + ND G L+ +A A +G + Sbjct: 261 AMSAETRMSAWVLALMPIAVGSFVIATSPHYFTAMWNDDSGRQLVYLAFALQTMGGFWLY 320 Query: 181 LMINFD 186 + Sbjct: 321 RLARLR 326 >gi|28871969|ref|NP_794588.1| hypothetical protein PSPTO_4854 [Pseudomonas syringae pv. tomato str. DC3000] gi|213968013|ref|ZP_03396159.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] gi|301383671|ref|ZP_07232089.1| hypothetical protein PsyrptM_13603 [Pseudomonas syringae pv. tomato Max13] gi|302059960|ref|ZP_07251501.1| hypothetical protein PsyrptK_08210 [Pseudomonas syringae pv. tomato K40] gi|302131626|ref|ZP_07257616.1| hypothetical protein PsyrptN_09547 [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28855222|gb|AAO58283.1| conserved protein of unknown function [Pseudomonas syringae pv. tomato str. DC3000] gi|213927356|gb|EEB60905.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] Length = 295 Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 44/184 (23%), Positives = 95/184 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R + + P LD VRS+++G ++DAV + + P++ R+ Sbjct: 110 VSWRYERRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIELNVQ 169 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+SL +++ E F+ + V + GGN SE + NL +++RDR+ +++ Sbjct: 170 LGVSLPDAVRDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 229 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + +A ++G LP ++ +P Y+ + +D G ++L +A ++G +++ Sbjct: 230 AMTGETRMTAIVLGLLPVSMAGYFLAVNPDYLLQMWSDDSGRIMLSMAFGLQMLGCLMLW 289 Query: 181 LMIN 184 M+ Sbjct: 290 RMLR 293 >gi|330976794|gb|EGH76830.1| type II secretion system protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 294 Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 45/184 (24%), Positives = 89/184 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + R + + P LD VRS+++G ++DAV + + P++ R+ Sbjct: 109 VSWRYEVRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQ 168 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+SL ++ E F+ + V + GGN SE + NL +++RDR+ +++ Sbjct: 169 LGVSLPDAARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 228 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + +A ++ LP + +P Y+ + +D G ++L A A G +V+ Sbjct: 229 AMTGETRMTAVVLALLPISTAGYFLAVNPNYLLHMWDDESGKIMLSAAFALQATGCVVLW 288 Query: 181 LMIN 184 M+ Sbjct: 289 RMLR 292 >gi|291546643|emb|CBL19751.1| Flp pilus assembly protein TadB [Ruminococcus sp. SR1/5] Length = 260 Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 87/192 (45%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG------QSSDPVRSEFRRV 55 K ++ + F +AL + +V+AG +AV V + + EFR + Sbjct: 69 KKCTARQQRELNYQFRDALTAMNVAVQAGYSAENAVRASVKDLGRLYEKGSDILDEFRYI 128 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 L + + E + + ++++ F+ V + GG++++ + ++R+L D+ + Sbjct: 129 ESQLRLSVPVEELFLDLGKRSGVEDIENFAAVFYTAKRTGGDMTQVIQKVARMLSDKIEV 188 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K +++A K+ ++ +P + + TSPG+++VL +P G + V + Sbjct: 189 KKEIEATLAAKKSEQMVMSIMPAGIICYLKLTSPGFLDVLYGNPFGICAMTVCMVIYGLS 248 Query: 176 IMVMRLMINFDV 187 + +++ +V Sbjct: 249 YWLGVKIVDIEV 260 >gi|238782878|ref|ZP_04626907.1| Type II secretion system protein F domain protein [Yersinia bercovieri ATCC 43970] gi|238716301|gb|EEQ08284.1| Type II secretion system protein F domain protein [Yersinia bercovieri ATCC 43970] Length = 181 Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 73/173 (42%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 F DFP + +I + +G ++ + + + P+ E + +LG S Sbjct: 6 FHQDFPEVILMITMAASSGASINQILERCGYEINGPLGDELTLICRKLNLGESPETVFYD 65 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + E F T+I + Q GG L E LS ++ K + K ++ + + S Sbjct: 66 AYQRFHYPEFYFLITIILLNLQQGGQLRELTNRLSSVIAKNKTSEQKKAVMTAQTRMSVN 125 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 II +P S L+YF P + + N G ++ A LIG+ ++R M+ Sbjct: 126 IISLMPLAFSLLLYFIDPTTIESMWNHSIGKLIFYYIIASELIGLALIRKMLR 178 >gi|110626526|gb|ABG79010.1| TadB [Yersinia ruckeri] Length = 296 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 79/178 (44%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K++ F + FP L I+ + +G ++ + + + +EF + +LG + Sbjct: 115 KQKNKHFNESFPEVLTIMNMAASSGANLNQILERCGKEIQGELGNEFNLIYRRLNLGEAP 174 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + R E FF++VI + + GG LS+ + + + + + +K + ++ + Sbjct: 175 EIVFNDAYRKFNYAEFHFFTSVILLNIKQGGQLSDLIKKMHKGITESNKLKQRKAIMTAQ 234 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + ++ +P + +Y+ P + L + G ++ ++GI ++R MI Sbjct: 235 IRMTTNVVSLIPIVFTAFLYYIDPNSIETLWSQDVGKEIISYIVISEILGIFIIRNMI 292 >gi|297568750|ref|YP_003690094.1| Type II secretion system F domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296924665|gb|ADH85475.1| Type II secretion system F domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 305 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 88/185 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + ++R + P +D ++R+V AG + A+ S P+ +V Sbjct: 120 LYYRSQRRRRLMVAQIPTFIDQLLRAVAAGHTLDAALLTATADSRLPLGEVLEQVTREIK 179 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + ++S +R L+E+ + I V + G ++ E L +L +++ + + + + Sbjct: 180 LGGEIDTALSEAIRLYDLEELRLLALAIRVNRRYGSSIQELLRSLVTLIQQEETSRQEFR 239 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ E++ +AW++G +P + + T+P Y L +DP G +L +A G++ + Sbjct: 240 ALTGESRLTAWVLGLMPLLLVGFLLLTNPEYPAHLWHDPAGRTILLIALLLQSGGVLALW 299 Query: 181 LMINF 185 + Sbjct: 300 RLTRV 304 >gi|288919649|ref|ZP_06413977.1| type II secretion system protein [Frankia sp. EUN1f] gi|288348938|gb|EFC83187.1| type II secretion system protein [Frankia sp. EUN1f] Length = 286 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 72/184 (39%), Gaps = 3/184 (1%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + R + +P+ +D + +VRAGL + +A+A + + +R F R E Sbjct: 96 RRRRGRMHDLREVWPDVVDNLASAVRAGLSLPEALAAVGVRGPVALRPAFTRFGEDYRAT 155 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQA 121 S S + R+ + + + + G +L L LS LR+ +A+++ Sbjct: 156 GSFSTCLDRLADELADPVADRIIESLRMAREVGGTDLGRLLRTLSTFLREDARTRAELET 215 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 +A + + P+ V L+ + P G +L A ++ ++M+ Sbjct: 216 RQTWTVNAARLAMAAPWIVLLLLASRGENVRA--YDSPTGVAVLAGGAGVSVLAYLIMKR 273 Query: 182 MINF 185 + Sbjct: 274 IGRL 277 >gi|66047621|ref|YP_237462.1| type II secretion system protein [Pseudomonas syringae pv. syringae B728a] gi|63258328|gb|AAY39424.1| type II secretion system protein [Pseudomonas syringae pv. syringae B728a] Length = 294 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 92/184 (50%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + R + + P LD VRS+++G ++DAV + + P++ R+ Sbjct: 109 VSWRYEVRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQ 168 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+SL ++ E F+ + V + GGN SE + NL +++RDR+ +++ Sbjct: 169 LGVSLPDAARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 228 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + +A ++ LP ++ +P Y+ + +D G ++L VA A + G +V+ Sbjct: 229 AMTGETRMTAVVLALLPISMAGYFLAVNPSYLLHMWDDESGKIMLSVAFALQVTGCVVLW 288 Query: 181 LMIN 184 M+ Sbjct: 289 RMLR 292 >gi|158317569|ref|YP_001510077.1| type II secretion system protein [Frankia sp. EAN1pec] gi|158112974|gb|ABW15171.1| type II secretion system protein [Frankia sp. EAN1pec] Length = 286 Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 73/184 (39%), Gaps = 3/184 (1%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + R + +P+ +D + +VRAG+ + + +A + + P+R F R E Sbjct: 96 RRRRARIHDLRELWPDVVDNLASAVRAGMSLPEGLAAVGVRGPAPLRPAFTRFGEDYRAT 155 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQA 121 S S + R+ + + + + G +L L LS LR+ +A+++ Sbjct: 156 GSFSTCLDRLADDLADPVADRIIESLRMAREVGGTDLGRLLRTLSAFLREDARTRAELET 215 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 +A + + P+ V L+ + P G ++L A ++ ++M+ Sbjct: 216 RQAWTVNAARLAMAAPWIVLLLLASRGENIQA--YDSPTGVLVLLGGAGVSVLAYVLMKR 273 Query: 182 MINF 185 + Sbjct: 274 IGRL 277 >gi|332162958|ref|YP_004299535.1| type II secretion system protein F domain protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667188|gb|ADZ43832.1| Type II secretion system protein F domain protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 223 Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 43/183 (23%), Positives = 82/183 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ K+ F +FP +L +I + +G ++ + + S P+ EF V + Sbjct: 37 LRLSRKRYYRFFKQNFPESLLMINMAASSGASINQILERCGQEISGPLGVEFNLVCRRLN 96 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S + E F T+I + Q GG L E + LS ++ K + K Sbjct: 97 VGESPESVFYDSYQRFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKA 156 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ + + S II +P S L+YF P + + + P G ++ + +IG++V+R Sbjct: 157 VMTAQIRMSVNIISIMPIAFSLLLYFLDPTTIESMWHHPIGKIVYYYISISEIIGMIVIR 216 Query: 181 LMI 183 M+ Sbjct: 217 KML 219 >gi|260587080|ref|ZP_05852993.1| putative bacterial type II secretion system protein F domain protein [Blautia hansenii DSM 20583] gi|260542570|gb|EEX23139.1| putative bacterial type II secretion system protein F domain protein [Blautia hansenii DSM 20583] Length = 248 Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 73/192 (38%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRV 55 K I+ R + F +AL+ + + AG + + + + EF + Sbjct: 57 KQQIRLRKKRLNYQFKDALNAMQVGISAGYSLDNTIREARKDLERLYGEKAEMAREFAYI 116 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + L E + + ++++ F+ V+ ++GGN+ L + +R + Sbjct: 117 ERQLGHSIPLEELLYDLGIRSRVEDILNFTDVLIQAKKMGGNMRGILNRCISSIEERIQV 176 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K ++ A+ K I+ +P + + TSP +++VL +P G ++ Sbjct: 177 KKEIDAVLASRKMEQKIMSFIPLGIILYMQITSPEFLSVLYGNPVGICVMTACLLLYTAA 236 Query: 176 IMVMRLMINFDV 187 + DV Sbjct: 237 FQWGVRLTQIDV 248 >gi|266621096|ref|ZP_06114031.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479] gi|288867252|gb|EFC99550.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479] Length = 245 Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 79/190 (41%), Gaps = 6/190 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ------SSDPVRSEFRRVIE 57 L +R + +F + I+ + AG V +A + + + +S + EF + Sbjct: 56 LKDQRLKRLNLEFKEGILILSSFLSAGYSVENAFSASIRELAVMYGASGMMVLEFSHMEG 115 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + + L +V F+ V + + GG L + + S ++RD+ ++ Sbjct: 116 QIRMNRPVEQVLMEFGDRSGLDDVRNFAEVFAAAKRSGGELVSIINHTSGVIRDKIQIQE 175 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++ ++ + I+ +PF + V +SPG+ +++ G ++ A + Sbjct: 176 EIATMTAAKQFEQKIMNLIPFFLVLYVDVSSPGFFDMMYQTGAGRWIMTGCLAIYAAAYV 235 Query: 178 VMRLMINFDV 187 + ++ +V Sbjct: 236 LAGRILRIEV 245 >gi|171321819|ref|ZP_02910722.1| type II secretion system protein [Burkholderia ambifaria MEX-5] gi|171092890|gb|EDT38140.1| type II secretion system protein [Burkholderia ambifaria MEX-5] Length = 224 Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 87/186 (46%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R + + P+ LD IVR V G V A + + +P+RS V Sbjct: 39 LASRIQRRRLRIVRQIPSFLDGIVRLVTLGNSVPAAFQSALLTTEEPLRSCLDHVSRMLR 98 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + + +E +V+ + + GG L ++ +RD + + ++ Sbjct: 99 GGVEIDRAMMHIAKIYRTEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELT 158 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SA+++ LP + + V T+P Y++ + NDP G LL VA L G + + Sbjct: 159 AMSSETRLSAFVLVMLPIGIGSFVVMTNPKYLHGMWNDPSGRTLLMVAFLLQLGGSVWLY 218 Query: 181 LMINFD 186 M Sbjct: 219 RMARLR 224 >gi|33600814|ref|NP_888374.1| hypothetical protein BB1829 [Bordetella bronchiseptica RB50] gi|33568414|emb|CAE32326.1| putative membrane protein [Bordetella bronchiseptica RB50] Length = 308 Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 43/184 (23%), Positives = 79/184 (42%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R + + P LD +VR + G V+ A +G P+ +R Sbjct: 123 LWLKADRRRRRMVHQLPTFLDALVRLITIGNSVNAAFQNALGSVEQPLLEVLQRADSQVR 182 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L ++ ++ R L+E+ S VI++ + GG + L ++ +RD + + ++ Sbjct: 183 SGKDLDAALHQVSRQYQLRELFLVSAVIALALRFGGRSDQVLERMAAFMRDLEQARDELT 242 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + SAWI+ LP ++ + + + +DP G LL A G + Sbjct: 243 ALSAEVRLSAWILALLPIGLALFIIIFNNQLFMGMWHDPMGFRLLVFAMLLQAGGSYWLY 302 Query: 181 LMIN 184 M Sbjct: 303 RMAR 306 >gi|45442766|ref|NP_994305.1| hypothetical protein YP_3004 [Yersinia pestis biovar Microtus str. 91001] gi|51597674|ref|YP_071865.1| integral membrane protein. [Yersinia pseudotuberculosis IP 32953] gi|108809094|ref|YP_653010.1| hypothetical protein YPA_3103 [Yersinia pestis Antiqua] gi|108810711|ref|YP_646478.1| hypothetical protein YPN_0546 [Yersinia pestis Nepal516] gi|145597783|ref|YP_001161859.1| hypothetical protein YPDSF_0473 [Yersinia pestis Pestoides F] gi|150260281|ref|ZP_01917009.1| putative type II secretion system integral membrane protein [Yersinia pestis CA88-4125] gi|162418856|ref|YP_001604879.1| type II secretion system protein F domain [Yersinia pestis Angola] gi|165924990|ref|ZP_02220822.1| type II secretion system protein F domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165939873|ref|ZP_02228412.1| type II secretion system protein F domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|166008715|ref|ZP_02229613.1| type II secretion system protein F domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166212189|ref|ZP_02238224.1| type II secretion system protein F domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167399582|ref|ZP_02305106.1| type II secretion system protein F domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419108|ref|ZP_02310861.1| type II secretion system protein F domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425112|ref|ZP_02316865.1| type II secretion system protein F domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466379|ref|ZP_02331083.1| type II secretion system protein F domain protein [Yersinia pestis FV-1] gi|186896812|ref|YP_001873924.1| type II secretion system protein [Yersinia pseudotuberculosis PB1/+] gi|218927880|ref|YP_002345755.1| hypothetical protein YPO0689 [Yersinia pestis CO92] gi|229837371|ref|ZP_04457534.1| Flp pilus assembly protein TadB [Yersinia pestis Pestoides A] gi|229840583|ref|ZP_04460742.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842867|ref|ZP_04463019.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis str. India 195] gi|229900908|ref|ZP_04516032.1| Flp pilus assembly protein TadB [Yersinia pestis Nepal516] gi|294502755|ref|YP_003566817.1| hypothetical protein YPZ3_0645 [Yersinia pestis Z176003] gi|45437632|gb|AAS63182.1| putative membrane protein [Yersinia pestis biovar Microtus str. 91001] gi|51590956|emb|CAH22614.1| Putative integral membrane protein [Yersinia pseudotuberculosis IP 32953] gi|108774359|gb|ABG16878.1| membrane protein [Yersinia pestis Nepal516] gi|108781007|gb|ABG15065.1| putative membrane protein [Yersinia pestis Antiqua] gi|115346491|emb|CAL19365.1| putative membrane protein [Yersinia pestis CO92] gi|145209479|gb|ABP38886.1| membrane protein [Yersinia pestis Pestoides F] gi|149289689|gb|EDM39766.1| putative type II secretion system integral membrane protein [Yersinia pestis CA88-4125] gi|162351671|gb|ABX85619.1| type II secretion system protein F domain protein [Yersinia pestis Angola] gi|165912184|gb|EDR30822.1| type II secretion system protein F domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|165923190|gb|EDR40341.1| type II secretion system protein F domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165992054|gb|EDR44355.1| type II secretion system protein F domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166206935|gb|EDR51415.1| type II secretion system protein F domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166963102|gb|EDR59123.1| type II secretion system protein F domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167052086|gb|EDR63494.1| type II secretion system protein F domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055875|gb|EDR65656.1| type II secretion system protein F domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186699838|gb|ACC90467.1| type II secretion system protein [Yersinia pseudotuberculosis PB1/+] gi|229682247|gb|EEO78339.1| Flp pilus assembly protein TadB [Yersinia pestis Nepal516] gi|229690134|gb|EEO82191.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis str. India 195] gi|229696949|gb|EEO86996.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705494|gb|EEO91504.1| Flp pilus assembly protein TadB [Yersinia pestis Pestoides A] gi|262360787|gb|ACY57508.1| hypothetical protein YPD4_0599 [Yersinia pestis D106004] gi|262364732|gb|ACY61289.1| hypothetical protein YPD8_0599 [Yersinia pestis D182038] gi|294353214|gb|ADE63555.1| hypothetical protein YPZ3_0645 [Yersinia pestis Z176003] gi|320016748|gb|ADW00320.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 291 Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 77/183 (42%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ K F DFP L +I + +G ++ + + P+ E + + Sbjct: 105 LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 164 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + E F T+I + Q GG L E + LS+I+ +K + K Sbjct: 165 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 224 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ + + S II +P S L+Y P + + P G ++ +IGI+++R Sbjct: 225 VMTAQIRMSVNIISIMPMLFSFLLYLLDPTTIEFVWQHPTGRFIIYYIIISEVIGILIIR 284 Query: 181 LMI 183 M+ Sbjct: 285 KML 287 >gi|323493499|ref|ZP_08098621.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546] gi|323312322|gb|EGA65464.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546] Length = 302 Score = 92.5 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 46/181 (25%), Positives = 88/181 (48%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +++ +F L +I R+V AGL V A++ + + EF R+ + LG Sbjct: 117 RKRQQVEEFEQSIVQVLGLISRAVSAGLSVPQAISQVAEAQDGLLGREFSRIEDQLALGH 176 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + +++ +P + +F+ + + GG L + L +LSR L D + M+ KV++L+ Sbjct: 177 GMKHTLNEACVRLPYKAFRYFTIALVLNQNSGGQLRDILHSLSRTLHDNRTMQKKVKSLT 236 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + +A + LP + +V + +P VLI G +L A ++IG + ++LM Sbjct: 237 AEPRMAARFLSLLPLGLLAVVAWVNPSLFGVLIETESGQSVLVYCAVSIVIGALSLQLMT 296 Query: 184 N 184 Sbjct: 297 R 297 >gi|317491687|ref|ZP_07950122.1| type II secretion system protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920121|gb|EFV41445.1| type II secretion system protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 290 Score = 92.5 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 81/176 (46%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 F D FP L ++ +V AG + A+ + F R+ +LG Sbjct: 112 RRYFEDRFPEILSVVNAAVSAGNSIHQALHRCGEGIDGDLGVTFHRIDRRLNLGEDPERV 171 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + +E FF V+ V Q GG L + LSRI+ + KNM + A++ EA+ Sbjct: 172 FNDAWENYRYREFYFFVVVMLVSLQHGGQLRTLMGRLSRIVNNSKNMARRKSAMTSEART 231 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 SA I+ SLP + + SP + +++DP G ++L A IG++++ +++ Sbjct: 232 SAKIVASLPLLFFCGMKYFSPENFDFVVHDPVGRLILYYVIASEAIGMIIIWILLR 287 >gi|330959998|gb|EGH60258.1| hypothetical protein PMA4326_15684 [Pseudomonas syringae pv. maculicola str. ES4326] Length = 294 Score = 92.1 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 94/184 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + R + ++ P LD VRS+++G +SDAV + + P++ R+ Sbjct: 109 VSWRYRVRVRRMIEQLPQLLDHSVRSLKSGRTLSDAVLYGIAAADQPLKDGMSRIERNVQ 168 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+SL ++ E F+ + V + GGN SE + NL R++R+R+ +++ Sbjct: 169 LGVSLPDAARDFAELYESDEFHLFALGLRVNHRYGGNASELMENLIRLIREREQAGRQLR 228 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + +A ++G LP ++ +P Y+ + ND G ++L +A L+G +++ Sbjct: 229 AMTGETRMTALVLGLLPVGMAGYFMVVNPDYLLHMWNDGSGRIMLSMAFGLQLLGCLMLW 288 Query: 181 LMIN 184 M+ Sbjct: 289 RMLR 292 >gi|270487716|ref|ZP_06204790.1| type II secretion system F domain protein [Yersinia pestis KIM D27] gi|270336220|gb|EFA46997.1| type II secretion system F domain protein [Yersinia pestis KIM D27] Length = 217 Score = 92.1 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 77/183 (42%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ K F DFP L +I + +G ++ + + P+ E + + Sbjct: 31 LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 90 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + E F T+I + Q GG L E + LS+I+ +K + K Sbjct: 91 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 150 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ + + S II +P S L+Y P + + P G ++ +IGI+++R Sbjct: 151 VMTAQIRMSVNIISIMPMLFSFLLYLLDPTTIEFVWQHPTGRFIIYYIIISEVIGILIIR 210 Query: 181 LMI 183 M+ Sbjct: 211 KML 213 >gi|56460010|ref|YP_155291.1| Flp pilus assembly protein TadB [Idiomarina loihiensis L2TR] gi|56179020|gb|AAV81742.1| Flp pilus assembly protein TadB [Idiomarina loihiensis L2TR] Length = 233 Score = 92.1 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 83/182 (45%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 +HL K+R K P L + +R+G V A+ + G P+ E ++ + + Sbjct: 46 RHLKKQRYIKIEKQLPGMLIGLSNQLRSGTSVGAALKNLKGTLLAPLGQEVDELLRQEKV 105 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L++ + R +P+ + + + + GG S+ L+ L+ ++++K + Sbjct: 106 GKPLTDCLEDWQRRVPVFSIKLVVQSLVLGLKSGGQQSDLFLRLADNLQQQQHIKERQIT 165 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ +A+ A I+ +P + L+ + + + G +L VA M+IG +++ Sbjct: 166 LTSQARMQAKILVMMPVGLYFLLSWMKSEHTALFTESRVGIFMLIVALILMIIGGWMVKR 225 Query: 182 MI 183 ++ Sbjct: 226 IM 227 >gi|258651873|ref|YP_003201029.1| type II secretion system protein [Nakamurella multipartita DSM 44233] gi|258555098|gb|ACV78040.1| type II secretion system protein [Nakamurella multipartita DSM 44233] Length = 284 Score = 92.1 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 74/186 (39%), Gaps = 3/186 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L KR A + +P +D + VRAGL + +A+A I + + +R F++ Sbjct: 93 VSRLRHKRQADLRELWPEVVDNLTSGVRAGLSLPEALAAIGDRGPEQLRDPFKQFGADYR 152 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVI-SVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 ++S+ R+ + + + G +L L+ LS LRD +A++ Sbjct: 153 TTGRFNDSLDRLKATLADPVGDRVIESLRVAREVGGTDLGRLLSTLSGFLRDDARTRAEL 212 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A + +A + + P+ V L+ + P G ++L A I +M Sbjct: 213 LARQSWSVNAARMAVAAPWLVLILLATQRETLQA--YDTPTGTVILIAGAVLSFIAYRLM 270 Query: 180 RLMINF 185 + Sbjct: 271 IRIGRL 276 >gi|33593508|ref|NP_881152.1| hypothetical protein BP2525 [Bordetella pertussis Tohama I] gi|33572864|emb|CAE42798.1| putative membrane protein [Bordetella pertussis Tohama I] gi|332382916|gb|AEE67763.1| hypothetical protein BPTD_2483 [Bordetella pertussis CS] Length = 281 Score = 92.1 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 87/171 (50%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 P AL + ++RAG ++ A+ +V P+ EF ++ Q +G+S +++R+ R Sbjct: 111 PGALVAMACALRAGAGIAAALRQLVEHGEAPLAQEFGLLLREQRMGVSFDAALARLARRA 170 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + ++ + + V + GGNL+E L +++ + R ++ +V+AL + + AWI+G+L Sbjct: 171 SFESMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQAWIVGAL 230 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 P + ++ P M L + G L + GI ++R ++ DV Sbjct: 231 PPVLMGVLGRLQPEAMAALWHTLYGWAALALIVVLEGTGIWLIRRIVAIDV 281 >gi|33596529|ref|NP_884172.1| hypothetical protein BPP1911 [Bordetella parapertussis 12822] gi|33566298|emb|CAE37211.1| putative membrane protein [Bordetella parapertussis] Length = 281 Score = 92.1 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 87/171 (50%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 P AL + ++RAG ++ A+ +V P+ EF ++ Q +G+S +++R+ R Sbjct: 111 PGALVAMACALRAGAGIAAALRQLVEHGEAPLAQEFGLLLREQRMGVSFDAALARLARRA 170 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + ++ + + V + GGNL+E L +++ + R ++ +V+AL + + AWI+G+L Sbjct: 171 SFESMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQAWIVGAL 230 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 P + ++ P M L + G L + GI ++R ++ DV Sbjct: 231 PPVLMGVLGRLQPEAMAALWHTLYGWAALALIVVLEGTGIWLIRRIVAIDV 281 >gi|149927030|ref|ZP_01915288.1| type II secretion system protein [Limnobacter sp. MED105] gi|149824251|gb|EDM83471.1| type II secretion system protein [Limnobacter sp. MED105] Length = 302 Score = 91.7 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 47/182 (25%), Positives = 89/182 (48%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + +KR + L PN LD +VR G ++ + + + P++ ++ Q+ G Sbjct: 119 YRQRKRRLQMLGQLPNFLDGVVRVSAVGYSLTVSFNTALENAEQPLKEALGLAVQMQYAG 178 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L L +++ R+ R L E ++V+++ GG L L++ LRDR+ ++ A+ Sbjct: 179 LELDQAMHRLARVYGLSEFKLIASVVALALNYGGKSDILLGRLAQYLRDREQHHQEMLAM 238 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S EA+ SA + L ++ ++ +P Y+ + ND G MLL VA + G ++ M Sbjct: 239 SSEARMSAVFMCCLTPALAGIILTLNPAYLGTMWNDDTGRMLLFVAGILQIAGAAIIYRM 298 Query: 183 IN 184 + Sbjct: 299 VK 300 >gi|303241928|ref|ZP_07328421.1| Flp pilus assembly protein TadB-like protein [Acetivibrio cellulolyticus CD2] gi|302590483|gb|EFL60238.1| Flp pilus assembly protein TadB-like protein [Acetivibrio cellulolyticus CD2] Length = 305 Score = 91.7 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 79/186 (42%), Gaps = 1/186 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K I KR + LD + AG + A+ + +S DP++S +V Sbjct: 112 LKQRISKRKDLMTEQLIEWLDYMSSMGTAGKALLTALDYSIEKSRDPLKSVLEKVSANIK 171 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVI-SVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 SLSE+ + + +P+ E S I N+S +++ ++ + Sbjct: 172 KSQSLSEAFENVTKQIPIPEFKMVSMAISVHSEITNEGWPRTFENISSQMKENGDLFNTI 231 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A + E+K +++IIG +P + ++ P Y+ + P G + +A L G+ ++ Sbjct: 232 DASNTESKINSYIIGLMPLAMFIVIRLMQPEYVANSLESPIGKISYVIAGLLSLSGMYLV 291 Query: 180 RLMINF 185 R + N Sbjct: 292 RRISNV 297 >gi|296130403|ref|YP_003637653.1| Type II secretion system F domain protein [Cellulomonas flavigena DSM 20109] gi|296022218|gb|ADG75454.1| Type II secretion system F domain protein [Cellulomonas flavigena DSM 20109] Length = 306 Score = 91.7 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 91/186 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R F+ P ++ + AGL ++ A+A+ + P E RV Sbjct: 120 LSRAQQRRNEAFIGQMPELARLLSNATSAGLSIASALALAANELDAPAGPEMARVASRMR 179 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I + +P +EV+ ++ + V ++ GG+L AL +++ L +RK ++ +V+ Sbjct: 180 FGEDLDTAIGELTARLPSREVAVLASTLLVSARSGGSLVTALRDIADTLEERKEIRREVR 239 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + ++ ++ +++ + F + L+ PG + + D G L V ++ + G +++R Sbjct: 240 TVLAQSTSTGYLVIGMGFALLFLLNIIRPGTVEAMTEDWLGRGALVVGSSLFVGGFLLIR 299 Query: 181 LMINFD 186 M FD Sbjct: 300 RMTRFD 305 >gi|330830428|ref|YP_004393380.1| Flp pilus assembly protein TadB [Aeromonas veronii B565] gi|328805564|gb|AEB50763.1| Flp pilus assembly protein TadB [Aeromonas veronii B565] Length = 294 Score = 91.7 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 90/176 (51%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 +F P +D ++R++R G P++D + Q + F ++ + +G +++ + Sbjct: 117 EQFRTGLPEVIDGMIRALRVGAPLADIFQQVARQQRGLMSRLFAQMHDELQVGQPVAQVM 176 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + + + E F + V+S+Q + GG LS+ LA L LR R+ + A +Q ++ E++ S Sbjct: 177 RQAANRVTVAEFQFLTIVLSLQQETGGRLSDVLAQLVETLRARQTLAASIQTITAESRNS 236 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A ++ +LP + +++ T + L+ G ++G + + +G+ ++R + Sbjct: 237 AKVLAALPVIILLVLFSTGREHFTYLMTTASGQWVMGYVSISVAVGLWLIRRLTRL 292 >gi|330819178|ref|YP_004348040.1| type II secretion system protein [Burkholderia gladioli BSR3] gi|327371173|gb|AEA62528.1| type II secretion system protein [Burkholderia gladioli BSR3] Length = 282 Score = 91.7 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 44/187 (23%), Positives = 94/187 (50%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + K+R A P+ L + ++RAG + A+ +V ++ P+ E ++ Sbjct: 96 LAIMRKRRIAMLERQLPDVLLMTAGALRAGASFAVAMESVVSEAPAPISGELELLMRELR 155 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L ++ + R +P+ + + +++ ++GGNL+EAL +++R L + M+ K++ Sbjct: 156 LGIDLDIAMQNIERRIPVPDFLMVTAAVTISREVGGNLAEALESVARTLGAKLQMEGKIR 215 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + + ++ LP + ++ F P M L ++ G + L V A +G + Sbjct: 216 ALTSQGRMQGIVMTLLPLGLMVVLNFMEPEAMAPLFHERVGWLTLAVIAVMEFLGYKAIS 275 Query: 181 LMINFDV 187 + N DV Sbjct: 276 KITNIDV 282 >gi|73539234|ref|YP_299601.1| type II secretion system protein [Ralstonia eutropha JMP134] gi|72122571|gb|AAZ64757.1| type II secretion system protein [Ralstonia eutropha JMP134] Length = 312 Score = 91.3 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 89/184 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + +++ K L P LD +VR + G V A + + P+R + + Q Sbjct: 127 LWNRVRRIRQKMLLQLPGFLDGVVRLMTIGSSVPAAFQNSIANTDAPLRQCLVQAVHLQR 186 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +++ +M R LQE+ ++V+ + + GG + + +RDR+ + ++ Sbjct: 187 AGKELDQAVLQMGRIYHLQELVLLASVLRLSVRYGGRADVMMERTAAFMRDREQAQRELM 246 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + SAWI+G LP V ++ + GY+ ++ DP G +L A A + G ++ Sbjct: 247 ALSAETRLSAWILGLLPLVVGGGLFVLNAGYVLMMWRDPTGKTMLLTALALEIAGAFMLY 306 Query: 181 LMIN 184 + Sbjct: 307 RLAK 310 >gi|194366100|ref|YP_002028710.1| type II secretion system protein [Stenotrophomonas maltophilia R551-3] gi|194348904|gb|ACF52027.1| type II secretion system protein [Stenotrophomonas maltophilia R551-3] Length = 318 Score = 91.3 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 45/182 (24%), Positives = 84/182 (46%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 K A+ L P+ LD +VR G + A V Q+S P+R + G Sbjct: 135 RRTSKLRAQLLHQLPDFLDNLVRLTALGNSLQAAFQVASMQTSAPLRGLLDTTVRYARSG 194 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L +++ + + + S VI V ++GG + L + +RD + + ++ A Sbjct: 195 MDLDRALALAAQPYRMDVLKVLSVVIGVSVRIGGRSDQILQRMGDFMRDLEQAQQELAAT 254 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + SAW++G LP + L+ +SP + +++DP GH +L +A L G ++ + Sbjct: 255 TSETRMSAWVLGLLPPACAVLMAISSPEFFQPVLHDPLGHKILLIALGLELFGAFLLYRL 314 Query: 183 IN 184 Sbjct: 315 AK 316 >gi|312199822|ref|YP_004019883.1| type II secretion system F [Frankia sp. EuI1c] gi|311231158|gb|ADP84013.1| Type II secretion system F domain protein [Frankia sp. EuI1c] Length = 285 Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 69/178 (38%), Gaps = 3/178 (1%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 A +P+ +D + +VRAG+ + + +A + + P+R F R E S S Sbjct: 101 MADLRGMWPDVVDNLASAVRAGMSLPEGLAAVGQRGPAPLRGAFTRFGEEYRASGSFSSC 160 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + ++ + + + + G +L L LS LR+ +A+++ Sbjct: 161 LDKLADELADPVADRIIESLRLAREVGGTDLGRLLRTLSTFLREDARTRAELETRQSWTV 220 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +A + + P+ V L+ + P G +L A + +VM+ + Sbjct: 221 NAARLALAAPWVVLLLLATRGQNVSA--YDSPTGVAVLVGGGAVSVFAYVVMKRIGRL 276 >gi|152981651|ref|YP_001355003.1| Flp pilus assembly protein TadB [Janthinobacterium sp. Marseille] gi|151281728|gb|ABR90138.1| Flp pilus assembly protein TadB [Janthinobacterium sp. Marseille] Length = 311 Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 78/184 (42%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R K + P LD +VR G + A V + +P+R R Sbjct: 126 LWLKATRRHQKMVRQLPAFLDTMVRLTIVGNSLESAFQATVLTTEEPLRELLDRSNRLVQ 185 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ L ++ + R LQE+ + VI V + GG L ++ +RDR+ + ++ Sbjct: 186 AGMDLEHALVQKARVFRLQELELIAAVIGVALRFGGRADTVLERMAAFMRDREYSQNELV 245 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + SAWI+G LP + + + ++ DP G LL A IG + Sbjct: 246 ALSSETRLSAWILGLLPIGLGVFMVIFNNRMFVTMLEDPLGKNLLIFAVVLEAIGAYWLY 305 Query: 181 LMIN 184 + Sbjct: 306 RLAK 309 >gi|51891535|ref|YP_074226.1| putative integral membrane protein [Symbiobacterium thermophilum IAM 14863] gi|51855224|dbj|BAD39382.1| putative integral membrane protein [Symbiobacterium thermophilum IAM 14863] Length = 270 Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 84/190 (44%), Gaps = 6/190 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRVIE 57 L ++ D AL + S++AG + A+ + S + E Sbjct: 81 LARREAQALRDQLQEALLSLATSLKAGQSLPRALQRCAVELSRLHPGGGGLIREIELTAR 140 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 LG + E++ + +PL+E++ + + GGN+ E + N+++++ DR ++ Sbjct: 141 EVELGTPVDEALLDLRARVPLEELAALVDALVTTRRRGGNIVEVMGNVAQMVADRLAVER 200 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++Q L+ + + A I+ +P + +V T+P Y+ V G LG+ + G Sbjct: 201 EIQVLTAQKRTEAAILAMIPLGIYLVVRVTNPAYLAVFHATLWGQAALGLILLAVAGGYW 260 Query: 178 VMRLMINFDV 187 + + + + D+ Sbjct: 261 MAQRIASIDM 270 >gi|330873866|gb|EGH08015.1| type II secretion system protein F domain [Pseudomonas syringae pv. glycinea str. race 4] Length = 198 Score = 90.9 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 44/184 (23%), Positives = 89/184 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + R + + LD VRS+++G ++DAV + + P++ R+ Sbjct: 13 VSWRYEVRVRRMIQQLAQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIERNVQ 72 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+SL ++ E F+ + V + GGN SE + NL +++RDR+ +++ Sbjct: 73 LGVSLPDAARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 132 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + +A ++ LP ++ +P Y+ + ND G ++L +A G +V+ Sbjct: 133 AMTGETRMTALVLALLPVGMAGYFLTVNPSYLLHMWNDDSGKIMLSMAFVLQATGCVVLW 192 Query: 181 LMIN 184 M+ Sbjct: 193 RMLR 196 >gi|238796993|ref|ZP_04640497.1| Type II secretion system protein F domain protein [Yersinia mollaretii ATCC 43969] gi|238719253|gb|EEQ11065.1| Type II secretion system protein F domain protein [Yersinia mollaretii ATCC 43969] Length = 279 Score = 90.9 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 46/183 (25%), Positives = 80/183 (43%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K K F D P + +I + +G ++ + + S P+ E + + Sbjct: 93 LKISRKTHHTLFKRDLPEVILMINMAASSGASINQVLERCGNEISGPLGDELDLICRRLN 152 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S + + E F T+I + Q GG L E ++ LS+++ K + K Sbjct: 153 LGESPEAVFNDAYQRFLYPEFYFLITIILLNLQQGGQLRELISRLSQVINKNKTSEQKKA 212 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ + + S II +P STL+YF P M + N P G M+ +IGI ++R Sbjct: 213 VMTAQTRMSVNIISLMPLVFSTLLYFLDPATMESMWNHPMGKMVFYYIILSEVIGITIIR 272 Query: 181 LMI 183 M+ Sbjct: 273 TML 275 >gi|156741692|ref|YP_001431821.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] gi|156233020|gb|ABU57803.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] Length = 318 Score = 90.9 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 2/184 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 F ++ ++RAG+ + A+ + + +P RSEFR+ LG Sbjct: 137 RQNAYVRAFNKQLVEVTQLLANALRAGMSIQQAIGEVSERVPEPARSEFRQTHHELLLGD 196 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 +L ++ M R + +++ I VQ Q GGNL L ++ L +R+ ++ ++ +L+ Sbjct: 197 NLPLALHDMRRRVCSRDLDVLINAIVVQHQAGGNLVRVLNGMANTLNERQRLEREIDSLT 256 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ SA ++ LP ++ T G L G +LLGV A + +++ + Sbjct: 257 SEARFSALVVMVLPIFFLLMIRDTPLG--EALFQTVIGWVLLGVFAVVQVAVYFLIQRVA 314 Query: 184 NFDV 187 +V Sbjct: 315 RIEV 318 >gi|227871817|ref|ZP_03990219.1| type II secretion system protein [Oribacterium sinus F0268] gi|227842318|gb|EEJ52546.1| type II secretion system protein [Oribacterium sinus F0268] Length = 224 Score = 90.9 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 82/191 (42%), Gaps = 6/191 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRVI 56 L KKR + F L I+ + AG + +A+ + + + E +++ Sbjct: 34 KLRKKRQEVLVSQFKEMLSILSAYLSAGYSLENALFACIPDLENLLGKKCYMVEELKQIK 93 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 + + L E++S+ + ++ FS + V + GG+L + + S I+RD+ + Sbjct: 94 RSLSMNRPLEEALSQFALRSGVDDIHNFSEIFLVAKRSGGDLIQIIQQSSTIIRDKLTIT 153 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 ++ L+ + I+ +PF + + +SP + +L + G ++ L+ I Sbjct: 154 EEIITLNASRRFEQKIMNGVPFFMIFYLNASSPEFFRILYSTIMGRGVMSFCLCIYLLAI 213 Query: 177 MVMRLMINFDV 187 + + +I V Sbjct: 214 YLSQKIIAIPV 224 >gi|160935910|ref|ZP_02083284.1| hypothetical protein CLOBOL_00803 [Clostridium bolteae ATCC BAA-613] gi|158441152|gb|EDP18869.1| hypothetical protein CLOBOL_00803 [Clostridium bolteae ATCC BAA-613] Length = 245 Score = 90.9 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 83/192 (43%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRV 55 +L K+R + F + ++ + AG + + + + + + + + EFR + Sbjct: 54 SNLKKERARRLELQFKEGIQVLSSFLSAGYSLENGLTLSIKELEILFGRREMITEEFRIL 113 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + + E R +++V F+ V+S + GG L E + + I+RD+ + Sbjct: 114 SDGIRMNRPAEELFMDFGRRSGVEDVDNFAQVLSAAKRSGGELVEIIRQTAGIIRDKVQV 173 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K ++ + I+ +PF + + TSPG+ +V+ G ++ + A Sbjct: 174 KEEIHTMLASRIFEQRIMNLIPFLIVLYIDLTSPGFFSVMYGTWMGRSVMTMCLAAYAGA 233 Query: 176 IMVMRLMINFDV 187 +++ +++ +V Sbjct: 234 LVLAGKILDIEV 245 >gi|254245562|ref|ZP_04938883.1| type II secretion system protein [Burkholderia cenocepacia PC184] gi|124870338|gb|EAY62054.1| type II secretion system protein [Burkholderia cenocepacia PC184] Length = 204 Score = 90.9 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 85/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R K + P+ LD IVR V G V A + + +P+R V Sbjct: 19 LASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQSALLTTEEPLRGCLDVVSRMLR 78 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + + +E +V+ + + GG L ++ +RD + + ++ Sbjct: 79 GGIEIDRAMMHIAKIYRTEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELT 138 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SA+++ LP + + V T+P Y+ + DP G LL +A ++G + + Sbjct: 139 AMSSETRLSAFVLVMLPIAIGSFVVMTNPKYLYGMWGDPSGRSLLMIAFLAQVVGSIWLY 198 Query: 181 LMINFD 186 M Sbjct: 199 RMARLR 204 >gi|89068023|ref|ZP_01155440.1| type II/IV secretion system protein, TadC subfamily protein [Oceanicola granulosus HTCC2516] gi|89046262|gb|EAR52319.1| type II/IV secretion system protein, TadC subfamily protein [Oceanicola granulosus HTCC2516] Length = 987 Score = 90.9 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 75/160 (46%), Gaps = 4/160 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + ++R + + FP++LD+++ V AG + ++ + + + E+ V Sbjct: 824 VNKRQQERQQEIENGFPDSLDMMLVCVEAGQSLDQSIIRVARELKTGFPALAWEYELVAY 883 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + M + +V+ F TV+ Q G +++EAL + +RD++ M+A Sbjct: 884 EMKAGKDKISVLKDMSERCGVNDVASFVTVLIQSQQFGTSIAEALRVYAGEMRDKRVMRA 943 Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVLI 156 + +A ++ K + A ++ ++P + L+ + + LI Sbjct: 944 EEKANTLPTKMTLATMMLTVPPLLIILIGPSVFDIYDTLI 983 >gi|170022930|ref|YP_001719435.1| type II secretion system protein [Yersinia pseudotuberculosis YPIII] gi|169749464|gb|ACA66982.1| type II secretion system protein [Yersinia pseudotuberculosis YPIII] Length = 291 Score = 90.6 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 78/183 (42%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ K F DFP L +I + +G ++ + + P+ E + + Sbjct: 105 LKYSRSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 164 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + E F T+I + Q GG L E + LS+I+ +K + K Sbjct: 165 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 224 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ + + S II +P S L+Y P + + + P G ++ +IGI+++R Sbjct: 225 VMTAQIRMSVNIISIMPILFSFLLYLLDPTTIEFVWHHPTGRFIIYYIIISEVIGILIIR 284 Query: 181 LMI 183 M+ Sbjct: 285 KML 287 >gi|258515695|ref|YP_003191917.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM 771] gi|257779400|gb|ACV63294.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM 771] Length = 306 Score = 90.6 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 90/186 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +I KR L I S+R+G+ ++ A+A +G+ + + E +R+ Sbjct: 119 LNAMISKRGELLAKQLHGCLIIWANSLRSGVSLAQAIAGSIGRVAPQINEELKRIKYDID 178 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S ++++ + + +P+ E + QLGGNL+E N+ + +R + ++ Sbjct: 179 LGFSSADALEKALVRIPVAEFKMVVMTAKIHRQLGGNLAERFDNICLTIEERIATRDVLK 238 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A + +AK A + G +PF V ++ SP Y+ +++ P G M+L ++ + +G + Sbjct: 239 AHTTQAKLGAVVAGLMPFIVLIILKTMSPDYLKPMLDSPYGTMMLMLSVFLVFLGWFTIN 298 Query: 181 LMINFD 186 + Sbjct: 299 KLSTIK 304 >gi|257791503|ref|YP_003182109.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|257475400|gb|ACV55720.1| type II secretion system protein [Eggerthella lenta DSM 2243] Length = 306 Score = 90.6 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 91/182 (50%), Gaps = 1/182 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLS 64 KKR+ +F +AL +I ++R G +++ + +P+ SE +RVIE + +S Sbjct: 123 KKRSMQFETQLASALPMISENLRGGSSFEMSISAVAQFMPEPIHSELQRVIEDVSNASIS 182 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L ++ R+ + E +T + +Q + GGNL+ + ++ + R +K KV++ + Sbjct: 183 LPDAFERLAIRIQSSEAHLLATAVMIQKEGGGNLASVVDTIAETIARRIELKNKVRSSTA 242 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A+ SA + ++PF V + SPGYM+ P ++ AA IG+ ++ M Sbjct: 243 NARFSAVFVAAVPFAVLAFFTYGSPGYMDNFYAWPFWPAVIIAAAVLDGIGLFLISRMYK 302 Query: 185 FD 186 F Sbjct: 303 FK 304 >gi|149175457|ref|ZP_01854078.1| putative tight adherence tadb-related transmembrane protein [Planctomyces maris DSM 8797] gi|148845725|gb|EDL60067.1| putative tight adherence tadb-related transmembrane protein [Planctomyces maris DSM 8797] Length = 285 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 78/180 (43%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +R K D + +D + R+ + G ++ + ++ P+ E + +G+S Sbjct: 101 RSRRQNKINDQLSDMIDELARAAKTGRSLTHCFINVAEKTPAPLGDELKEASRRLQMGVS 160 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + + ++ S + V + GG+L + L L+R +RDR +++ + Sbjct: 161 MKAALDGLYERTGVASLNILSMALIVHQETGGDLVKVLERLARTIRDRVLFLGRLRTATA 220 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 ++A+A ++ LP + P Y+ L+ G A A +IG + + ++ Sbjct: 221 GSRATAVLMILLPPLILGFFILRDPTYLTTLMASSWGRGATFTAIALQVIGSLWVLRVLK 280 >gi|331082851|ref|ZP_08331973.1| hypothetical protein HMPREF0992_00897 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400180|gb|EGG79829.1| hypothetical protein HMPREF0992_00897 [Lachnospiraceae bacterium 6_1_63FAA] Length = 248 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 72/192 (37%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRV 55 K I+ R + F +AL+ + + AG + + + + EF + Sbjct: 57 KQQIRLRKKRLNYQFKDALNAMQVGISAGYSLDNTIREARKDLERLYGEKAEMAREFAYI 116 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + L E + + ++++ F+ V+ ++GGN+ L + +R + Sbjct: 117 ERQLGHSIPLEELLYDLGIRSRVEDILNFTDVLIQAKKMGGNMRGILNRCISSIEERIQV 176 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K ++ A+ K I+ +P + + TSP +++VL + G ++ Sbjct: 177 KKEIDAVLASRKMEQKIMSFIPLGIILYMQITSPEFLSVLYGNSVGICVMTACLLLYTAA 236 Query: 176 IMVMRLMINFDV 187 + DV Sbjct: 237 FQWGVRLTQIDV 248 >gi|116671218|ref|YP_832151.1| type II secretion system protein [Arthrobacter sp. FB24] gi|116611327|gb|ABK04051.1| type II secretion system protein [Arthrobacter sp. FB24] Length = 284 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 74/183 (40%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +KRTA +P+ +D + ++RAGL + +A+ + + + +R FR Sbjct: 93 VRWRARKRTATLRQLWPDVVDHLRSAIRAGLSLPEALIQLGEKGPEELRHVFRDFGADYR 152 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKV 119 G +++R+ + + + + G +L L L LR+ ++++ Sbjct: 153 AGGQFDPALNRLKERLADPVADRIVEALRLTREVGGSDLGRLLGTLGEFLRESARTRSEL 212 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +A +A + + P+ V L+ T P + N G +L I VM Sbjct: 213 EARQSWTVNAARLAVAAPWIVMVLL-ATRPEAVAA-YNTATGAAVLLGGLVVSTICYSVM 270 Query: 180 RLM 182 + Sbjct: 271 LRI 273 >gi|33152382|ref|NP_873735.1| tight adherence protein B [Haemophilus ducreyi 35000HP] gi|21326711|gb|AAL92471.1| TadB [Haemophilus ducreyi] gi|33148605|gb|AAP96124.1| tight adherence protein B [Haemophilus ducreyi 35000HP] Length = 295 Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 75/183 (40%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K ++ F + FP + I+ + +G+ + A+ P+ EF + + Sbjct: 110 KMGQRRNKKMFDETFPEVIQILNAATSSGVSLLQAMERCGKDIRGPLGQEFTLIYKRLAR 169 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G P + FF +I GG + E ++ L R + D M+ K +A Sbjct: 170 GEDAMAVFQDSYSRYPYKSFYFFICIIRTNLSRGGQIREVVSRLGRAIADANKMEQKKKA 229 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ EA+ S I+ P + F +P + ++NDP G ++L L+GI + Sbjct: 230 MTAEARMSVMIVACFPVFFFFFMKFMTPENFDFMMNDPGGRIILYYVVGSELLGIFTVWW 289 Query: 182 MIN 184 ++ Sbjct: 290 LMR 292 >gi|260775649|ref|ZP_05884545.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC BAA-450] gi|260608065|gb|EEX34234.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC BAA-450] Length = 306 Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 87/184 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 M L + F + FP+AL ++ +V AG + + + PV EF+++ + Sbjct: 120 MNWLQAREKQHFEEAFPDALTMLASAVSAGEGLMQSFIFVGRTLDGPVGKEFKKMGDRLQ 179 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S + S+ + P FF + GG + E +A L+R++ + ++ K Sbjct: 180 MGESTNAVFSKSCQRFPYPSFHFFVITMRANIDRGGQIKEVVAKLNRVMFSARAIEKKKY 239 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ EA+ SA I+G+LPF L+ + SP ++ P G +L IG+ ++ Sbjct: 240 ALTSEARVSAKIVGALPFFFLFLLQYISPDNFEFVMFHPDGRPVLYYVMISECIGMGLIW 299 Query: 181 LMIN 184 L++ Sbjct: 300 LLMK 303 >gi|238027559|ref|YP_002911790.1| Flp pilus assembly protein TadB [Burkholderia glumae BGR1] gi|237876753|gb|ACR29086.1| Flp pilus assembly protein TadB [Burkholderia glumae BGR1] Length = 338 Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 44/184 (23%), Positives = 84/184 (45%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 I R K + P+ LD +VR V G V A +G + P+R +V G Sbjct: 155 RRISARRLKIVQQLPSFLDGVVRLVTLGNSVPAAFQGALGTTEMPLRRCLDQVSRMLRTG 214 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + ++ + + ++E +V+ + + GG L ++ +RD + + ++ A+ Sbjct: 215 VEIDRAMLHIAKEYRVREFELVGSVLRLSVKYGGRADVMLERMATFMRDLEQAERELHAM 274 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAW++G LP V + V T+P Y + + G ++L VA ++G ++ M Sbjct: 275 SAETRLSAWVLGLLPVAVGSFVVSTNPQYFTAMWMNESGRLVLYVAFGLQMLGGYLLYRM 334 Query: 183 INFD 186 Sbjct: 335 ARLR 338 >gi|254524987|ref|ZP_05137042.1| Flp pilus assembly protein TadB [Stenotrophomonas sp. SKA14] gi|219722578|gb|EED41103.1| Flp pilus assembly protein TadB [Stenotrophomonas sp. SKA14] Length = 318 Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 44/184 (23%), Positives = 85/184 (46%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + A+ L P+ LD +VR G + A V Q+S P+R + Sbjct: 133 IMRRTTRLRAQLLHQLPDFLDNLVRLTALGNSLQAAFQVASMQTSAPLRGLLDTTVRYAR 192 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ L ++S + + + S VI V ++GG + L + +RD + + ++ Sbjct: 193 SGMDLDRALSLAAQPYRMDVLKVLSVVIGVSVRIGGRSDQILQRMGDFMRDLEQAQQELA 252 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A + E + SAW++G LP + L+ SP + ++++P GH +L +A L+G ++ Sbjct: 253 ATTSETRMSAWVLGLLPPASAVLMAIASPDFFQPVLHEPLGHKVLLIALGLELVGAFLLY 312 Query: 181 LMIN 184 + Sbjct: 313 RLAK 316 >gi|269926132|ref|YP_003322755.1| von Willebrand factor type A; type II secretion system protein [Thermobaculum terrenum ATCC BAA-798] gi|269789792|gb|ACZ41933.1| von Willebrand factor type A; type II secretion system protein [Thermobaculum terrenum ATCC BAA-798] Length = 643 Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 1/158 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I +R + L P+ALD++ SV AGL A+ IV + + + EF V+ Sbjct: 483 LSREITQRRRRILLQMPDALDLLTISVEAGLGFDAAMLEIVQKWDNDIAREFALVLSEMK 542 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S +++ M + L E+ + I ++G ++ L+ S +R R+ +A+ Sbjct: 543 LGKSRRDALRSMAERVQLDEMKLLVSSIVQADEIGASIGRTLSIQSEQMRLRRRQRAEEL 602 Query: 121 ALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 K ++ P L+ P +N L N Sbjct: 603 GHKAVIKIIIPMVLFIFPAVFVVLLGPAIPTILNALGN 640 >gi|257069183|ref|YP_003155438.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810] gi|256560001|gb|ACU85848.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810] Length = 290 Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 74/186 (39%), Gaps = 3/186 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ ++RT + +P A+D I ++RAGL + +A+ + + +R F Sbjct: 99 LRSAARRRTTAMREVWPEAVDHINSAIRAGLSLPEALVQLSRNGPEELRPAFAEYALDYQ 158 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKV 119 + + R+ + + + G +L L LS LR+ +A++ Sbjct: 159 ASGDFASCLDRLKIRLADPVGDRIVEALRITRDVGGTDLGSLLRTLSAFLREDARTRAEL 218 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +A +A + + P+ V L+ T P + G +L+ V A LI VM Sbjct: 219 EARQSWTVNAARLALAAPWIVLALM-ATRPQAAQA-YDTATGMVLIVVGAVASLIAYRVM 276 Query: 180 RLMINF 185 L+ Sbjct: 277 LLIARL 282 >gi|167760286|ref|ZP_02432413.1| hypothetical protein CLOSCI_02659 [Clostridium scindens ATCC 35704] gi|167662169|gb|EDS06299.1| hypothetical protein CLOSCI_02659 [Clostridium scindens ATCC 35704] Length = 238 Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 28/189 (14%), Positives = 75/189 (39%), Gaps = 6/189 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIET 58 +K+ +FL F A+ + ++ G V +A+ + + EF + Sbjct: 50 ARKKDQEFLLQFKEAIQAMASALNTGYSVENALLEAQKELRLLYPEDARISREFLVMARQ 109 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L + + + + ++V F V + + GG++ + N + + D+ ++K + Sbjct: 110 LRLHVPMEQILEEFAGRSGQEDVENFVAVFAAARKSGGDMISIIRNTANQIGDKIDVKRE 169 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + K ++ ++P+ + + + P +M+ L + G ++ L + Sbjct: 170 IDTVLAAKKYEFRVMAAIPYAIIGYMSLSFPEFMDSLYGNIMGIGVMSACLTMYLGAYYL 229 Query: 179 MRLMINFDV 187 +I +V Sbjct: 230 GARIIRIEV 238 >gi|294146461|ref|YP_003559127.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S] gi|292676878|dbj|BAI98395.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S] Length = 297 Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 45/185 (24%), Positives = 92/185 (49%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ ++R ++ P +D + + G ++ A+ + + VRS V Sbjct: 111 VRRRAQRRVEALIEALPYYIDAVRQMQAVGNSLAQALDRALADAPAVVRSYIAPVARRLE 170 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG +++++ + + + E+S + I + GG++S L NL+ ILR+R +K +++ Sbjct: 171 LGAPVADAMQVLAERLRVPEISMLAAAIRTNMRYGGSISAVLLNLANILRERIRIKRELK 230 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A EAK S ++ +P ++ +P Y++ + DPRGH L VA +G++VMR Sbjct: 231 AAISEAKISGRVLIVMPLVAMAVLVAMNPDYIDFFLRDPRGHRLAVVALVLQGMGMLVMR 290 Query: 181 LMINF 185 ++ Sbjct: 291 RVMRL 295 >gi|291460200|ref|ZP_06599590.1| putative bacterial type II secretion system protein F domain protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291417147|gb|EFE90866.1| putative bacterial type II secretion system protein F domain protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 256 Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 83/190 (43%), Gaps = 6/190 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIE 57 L K+R K L +F AL ++ + AG + +A + + + + EF+++ E Sbjct: 67 LRKQRQRKLLLEFREALSVLSSFLGAGYSLENAFRLSGRELSSLLGENAMISREFQKISE 126 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L + + + L E+ FS + SV + GG L + S ++ D+ + Sbjct: 127 GLEQKLPIEDLLFDFSTRSGLDEIRNFSELFSVARKSGGELETIIRRSSELIHDKIGISE 186 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++ LS + I+ +PF + + +SP ++ +L G +L+ L+ + Sbjct: 187 EILTLSAARRYEQRIMNLIPFLLLLYMKLSSPDFLRILYETAAGRILMSFCLFLYLLAVR 246 Query: 178 VMRLMINFDV 187 + +++ +V Sbjct: 247 LSERILDIEV 256 >gi|330816718|ref|YP_004360423.1| Flp pilus assembly protein TadB [Burkholderia gladioli BSR3] gi|327369111|gb|AEA60467.1| Flp pilus assembly protein TadB [Burkholderia gladioli BSR3] Length = 329 Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 84/184 (45%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 I R K + P+ LD +VR V G V A +G + P+R +V G Sbjct: 146 RRISARRLKIVRQLPSFLDGVVRLVTLGNSVPAAFQGALGTTEMPLRLCLDQVSRMLRTG 205 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + ++ + + ++E +V+ + + GG L +S +RD + + +++A+ Sbjct: 206 VEIDRAMLHIAKEYRIREFELVGSVLRLSVKYGGRADVMLERMSTFMRDLEQAERELRAM 265 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAW++G LP V + V T+P Y + + G ++L VA IG ++ M Sbjct: 266 SAETRLSAWVLGLLPIAVGSFVVSTNPKYFMAMWMNESGRVVLYVAFILQAIGGFMLYRM 325 Query: 183 INFD 186 Sbjct: 326 ARLR 329 >gi|330953056|gb|EGH53316.1| type II secretion system protein [Pseudomonas syringae Cit 7] Length = 294 Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 45/184 (24%), Positives = 92/184 (50%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + R + + P LD VRS+++G ++DAV + + P++ R+ Sbjct: 109 VSWRYEVRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQ 168 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+SL ++ E F+ + V + GGN SE + NL +++RDR+ +++ Sbjct: 169 LGVSLPDAARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 228 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + +A ++ LP ++ +P Y+ + +D G ++L +A A + G +V+ Sbjct: 229 AMTGETRMTALVLALLPITMAGYFLAVNPSYLLHMWDDDSGKIMLSMAFALQVTGCVVLW 288 Query: 181 LMIN 184 M+ Sbjct: 289 RMLR 292 >gi|255281814|ref|ZP_05346369.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469] gi|255267487|gb|EET60692.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469] Length = 245 Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 83/189 (43%), Gaps = 6/189 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIET 58 +KKR + F + + ++ AG V +A + + + EFR ++ Sbjct: 57 MKKRQRELSAQFLAGMQSVSVALSAGCSVENAFGEALRELRQLYEEDAMIVREFRYIVVQ 116 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + SL + ++ + ++++ F+ + S + GGNL + N + + ++ + + Sbjct: 117 LGMNRSLEQLLTGLAVRSGIEDIRNFADIFSAAKRTGGNLIAIIRNTVQCISQKEETRRE 176 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + I+ +P + V SPG+++V+ ++P G +++ + + + Sbjct: 177 INTCLSAKRLEQNIMSIVPCMILVYVQMVSPGFLDVMYHNPAGILIMSICLLVYFLAWLW 236 Query: 179 MRLMINFDV 187 R +++ +V Sbjct: 237 GRKIVSIEV 245 >gi|261251594|ref|ZP_05944168.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891] gi|260938467|gb|EEX94455.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891] Length = 302 Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 45/181 (24%), Positives = 88/181 (48%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 K++ +F L +I R+V AGL V A++ + + EF R+ + LG Sbjct: 117 RKKQQIEEFEQSIVQVLGLISRAVSAGLSVPQAISQVAESQGGLLGREFSRIEDQLALGH 176 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + +++ +P + +F+ + + GG L E L +LSR L D + M+ KV++L+ Sbjct: 177 GMRYTLNEACIRLPYKAFRYFTIALVLNQSNGGQLREILHSLSRTLHDNRTMQKKVKSLT 236 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + +A + LP + +V + +P +LI G +L A +++G + +++M Sbjct: 237 SEPRMAARFLSLLPLGLLAVVAWINPSLFVLLIKTETGQSVLIYCAVSIVLGAITLQVMT 296 Query: 184 N 184 Sbjct: 297 K 297 >gi|332534352|ref|ZP_08410193.1| Flp pilus assembly protein TadB [Pseudoalteromonas haloplanktis ANT/505] gi|332036171|gb|EGI72645.1| Flp pilus assembly protein TadB [Pseudoalteromonas haloplanktis ANT/505] Length = 291 Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 78/178 (43%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 + AKF F ++ + + GL + ++ + ++ + +++ +G Sbjct: 112 KLAKFEHHFLEFIETVQSCLSTGLSLQQSMQFADEHADPYIKKQSSLLLQRMSMGSDAET 171 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 S + ++ + V F+ I +Q +L++ L ++ ++ R + +++A K Sbjct: 172 SFAPLIERYNCETVRLFAHSIITHTQSQCDLTDMLKSVCNMMSLRTLDRQQLKAKLSGTK 231 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +A G LP+ + L +T P + L+NDP G + VA L G + +RL + Sbjct: 232 YAAVFSGFLPYALIPLFSYTDPTWFEPLLNDPNGIAFITVALLCQLFGFLWLRLSLRV 289 >gi|190574782|ref|YP_001972627.1| putative type II secretion/pilus assembly transmembrane protein [Stenotrophomonas maltophilia K279a] gi|190012704|emb|CAQ46332.1| putative type II secretion/pilus assembly transmembrane protein [Stenotrophomonas maltophilia K279a] Length = 313 Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 84/182 (46%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 K A+ L P+ LD +VR G + A V Q+S P+R + G Sbjct: 130 RRTTKLRAQLLHQLPDFLDNLVRLTALGNSLQAAFQVASMQTSAPLRGLLDTTVRYARSG 189 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L ++S + + + S VI V ++GG + L + +RD + + ++ A Sbjct: 190 MDLDRALSLAAQPYRMDVLKVLSVVIGVSVRIGGRSDQILQRMGDFMRDLEQAQQELAAT 249 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + SAW++G LP + L+ +SP + +++DP GH +L +A L G ++ + Sbjct: 250 TSETRMSAWVLGLLPPASAVLMAISSPEFFQPVLHDPLGHKILLIALGLELFGAFLLYRL 309 Query: 183 IN 184 Sbjct: 310 AK 311 >gi|84501671|ref|ZP_00999843.1| type II/IV secretion system protein, TadC subfamily protein [Oceanicola batsensis HTCC2597] gi|84390292|gb|EAQ02851.1| type II/IV secretion system protein, TadC subfamily protein [Oceanicola batsensis HTCC2597] Length = 330 Score = 89.0 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 66/148 (44%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + +R + + FP+ALD+++ V AG + A+ + + S + EF V Sbjct: 159 INKRQAQRQEEITNGFPDALDMLLVCVEAGQSMDQAILRVAKEIRVSYPSLADEFELVSH 218 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + + M + +++ F TV+ + G ++++AL + +RD++ M+A Sbjct: 219 EIKAGKDKASVLGDMAERCGVPDIASFVTVLIQSASFGTSVADALRVYASEMRDKRVMRA 278 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A + K + + + ++ Sbjct: 279 EEKANKLPTKMTLATMMLTVPPLLIILI 306 >gi|238923483|ref|YP_002936999.1| hypothetical protein EUBREC_1103 [Eubacterium rectale ATCC 33656] gi|238875158|gb|ACR74865.1| Hypothetical protein EUBREC_1103 [Eubacterium rectale ATCC 33656] Length = 286 Score = 89.0 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 76/193 (39%), Gaps = 7/193 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRR 54 ++ +IKK+ + F + L+ + S+ AG V D+ + + SE Sbjct: 95 IQSIIKKQKNQLNKQFRDMLEALSTSLGAGKNVIDSFRSVYDDMKMQYEDGAYIISELEL 154 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 ++ + + + + +++ F+ V + + GGN+ + + + IL D+ Sbjct: 155 LLSGMDNNIDIEDLLLDFGERSGNEDIESFAKVFQICYRKGGNIKDTVRSTYEILNDKME 214 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + ++ + K ++ +P + ++ SP + + P G M VA + Sbjct: 215 IAEDIETVVTANKTEQNVMLIMPIGLIGMMKLMSPDFAENFV-SPSGIMATTVAVIIFVA 273 Query: 175 GIMVMRLMINFDV 187 + R ++ + Sbjct: 274 AYFIGRKVLEIKI 286 >gi|84687272|ref|ZP_01015152.1| type II/IV secretion system protein, TadC subfamily protein [Maritimibacter alkaliphilus HTCC2654] gi|84664705|gb|EAQ11189.1| type II/IV secretion system protein, TadC subfamily protein [Rhodobacterales bacterium HTCC2654] Length = 324 Score = 89.0 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 72/159 (45%), Gaps = 4/159 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + + R + + FP+ALD+++ V AG + A+ + + + EF V Sbjct: 161 VTRRVDSRKEEITNGFPDALDMMLVCVEAGQSLDQAIIRVAKEIRAGYPALADEFEIVSW 220 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + + M + +V F TV+ + G +++EAL + +RD++ M+A Sbjct: 221 EIKAGKDRIQVLRDMGERCGVADVQSFVTVLIQSTSFGTSIAEALRVYAGEMRDKRVMRA 280 Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A ++ K + A ++ ++P + L+ + L Sbjct: 281 EEKANTLPTKMTLATMMLTVPPLLIILIGPSVYEVYKTL 319 >gi|260892677|ref|YP_003238774.1| Type II secretion system F domain protein [Ammonifex degensii KC4] gi|260864818|gb|ACX51924.1| Type II secretion system F domain protein [Ammonifex degensii KC4] Length = 283 Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 82/164 (50%), Gaps = 1/164 (0%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 ++ ++RAG V AV V + P++ E ++ LG SL E++ R Sbjct: 110 LEGVCGVMATALRAGQDVMSAVEGSVKYARPPLKRELEELVAEVKLGRSLGEAVENFARK 169 Query: 76 MPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 P E + +++ Q G + +AL +++ +R+R +K +V+A + + SA ++G Sbjct: 170 WPSPETRLLAYAVTLAQRMGGQAVPKALLSVTSSVRERLELKHQVRAKTTYQRVSAVVVG 229 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 ++P +++F +PG++ L+ P G V A +++G ++ Sbjct: 230 AVPLWCLGVMWFLNPGFLGSLLETPGGRACFTVGVALLVVGWLL 273 >gi|317500896|ref|ZP_07959107.1| hypothetical protein HMPREF1026_01050 [Lachnospiraceae bacterium 8_1_57FAA] gi|316897694|gb|EFV19754.1| hypothetical protein HMPREF1026_01050 [Lachnospiraceae bacterium 8_1_57FAA] Length = 205 Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 83/193 (43%), Gaps = 6/193 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRR 54 ++ L +KR +F F NA+ + +++AG V +A+ + +R EFR+ Sbjct: 13 LRDLCRKREKEFRVQFSNAIQAMGAALKAGYSVENAIREAEKDLAPMYEENVRIRKEFRK 72 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 ++ + + + + M ++ F TV S GG+ + N +I+ + + Sbjct: 73 MVHQLDMKMPAVSVMEQFSERMKQEDTEDFVTVFSSAKMSGGDSISIIRNAVKIISGKID 132 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + ++Q + K I+ ++PF + + T +++VL + G + + + Sbjct: 133 TEQEIQTMFASKKLEFEIMCAVPFFIILYMKLTFGEFLSVLYENAAGRCFMTICLIAYIA 192 Query: 175 GIMVMRLMINFDV 187 R +I+ +V Sbjct: 193 AYSFGRKIIHIEV 205 >gi|160893700|ref|ZP_02074484.1| hypothetical protein CLOL250_01254 [Clostridium sp. L2-50] gi|156864685|gb|EDO58116.1| hypothetical protein CLOL250_01254 [Clostridium sp. L2-50] Length = 301 Score = 88.6 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 79/192 (41%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55 I+KR + +F + + + S+ AG +A + S + E + V Sbjct: 110 SRCIEKRQRQLYVEFKDMVQSLAASMGAGYAFENAFTAAYEEMRKLYGDSGLIVKELKWV 169 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 I + + + M ++E+S F+ V+ V + GGN+ + + + + + Sbjct: 170 IRGLRMHEDIEYLLQDMGERSGVREISEFAQVVGVAKRTGGNMVHIMKATAADISRKMEV 229 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + ++Q + K I+ +PF + + + Y+++L + G +++ + A ++ Sbjct: 230 ELEIQTMIAAKKYEQKIMLIVPFFILAYLRIANGSYIHILYENIAGRLIMTICLAVSILS 289 Query: 176 IMVMRLMINFDV 187 R MI V Sbjct: 290 AAWSRKMIRIGV 301 >gi|218132582|ref|ZP_03461386.1| hypothetical protein BACPEC_00441 [Bacteroides pectinophilus ATCC 43243] gi|217992308|gb|EEC58311.1| hypothetical protein BACPEC_00441 [Bacteroides pectinophilus ATCC 43243] Length = 248 Score = 88.6 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 75/192 (39%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55 + L K+ + F + + + S+ G + +A + + EFR + Sbjct: 57 RELAKREDERLAGAFKDGIIAVSFSLNVGYSIENAFREAYKEMQMLYGSESRIAKEFRII 116 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 ++ + + ++++ +F+ V + GG+L + N + ++RD+ + Sbjct: 117 CNRMAQNENIEDILEDFAAESGVEDILYFAQVFRYAKRSGGDLMSIIRNTASVIRDKNEV 176 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 ++ + + ++ +PF + + SP ++ L + G ++ A + Sbjct: 177 AEDIRTIISGRRMEQMVMNFVPFGIIVYLRLASPEFIEPLYGNAAGVAVMTGCLAVYALA 236 Query: 176 IMVMRLMINFDV 187 I + R + + V Sbjct: 237 IALGRKITDIKV 248 >gi|299529715|ref|ZP_07043152.1| type II secretion system protein [Comamonas testosteroni S44] gi|298722578|gb|EFI63498.1| type II secretion system protein [Comamonas testosteroni S44] Length = 405 Score = 88.6 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 57/182 (31%), Gaps = 11/182 (6%) Query: 4 LIKKRT----AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIE 57 IKKR K D + ++AG+P+ + ++ ++ V + Sbjct: 51 KIKKRRTRGGKKIKPKDIALFTRQLATMMKAGVPLLQSFDIVGRGNTNPNVTKLLNDIRS 110 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G SLS + + + + + G L L L+ + + +K+ Sbjct: 111 DVETGTSLSAAFRKFPL-----YFNSLYCNLVEAGEAAGILESLLDRLATYMEKTEAIKS 165 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 K+++ M + + + + V D LL + + + Sbjct: 166 KIKSALMYPTSVMIVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLLVMGISDYFVQYW 225 Query: 178 VM 179 + Sbjct: 226 WL 227 Score = 36.3 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 15/131 (11%), Positives = 39/131 (29%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ +A+ + G S + + R+ G SL+ +++ Sbjct: 275 WTRTLSTMFAAGVPLVEALDSVGGASGNYLYKNATDRIQSEVSTGTSLTVAMANA----- 329 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G + L + + + ME ++ + Sbjct: 330 -NIFPSMVLQMCAIGEESGAIDHMLGKAADFYESEVDEMVAGLSSLMEPIIIVFLGTLIG 388 Query: 138 FCVSTLVYFTS 148 V ++ Sbjct: 389 GIVVSMYLPIF 399 >gi|220913152|ref|YP_002488461.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] gi|219860030|gb|ACL40372.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] Length = 285 Score = 88.6 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 75/183 (40%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ KKRTA +P+ +D + ++RAGLP+ +A+ + + + +R FR Sbjct: 94 LRWRAKKRTALLRQLWPDVVDHLRSAIRAGLPLPEALIQLGDKGPEELRPVFREFGADYR 153 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKV 119 G S+ ++ + + + + G +L + L L+ LR+ ++++ Sbjct: 154 AGGQFDGSLDKLKNRLADPVADRIVEALRLTREVGGSDLGKLLGTLAEFLRENARTRSEL 213 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +A +A + + P+ V L+ T P + N G +L L M Sbjct: 214 EARQSWTVNAARLAVAAPWIVMLLL-ATRPEAVQA-YNTAIGAAVLLGGLVISLACYSTM 271 Query: 180 RLM 182 + Sbjct: 272 LRI 274 >gi|37680190|ref|NP_934799.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016] gi|37198937|dbj|BAC94770.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016] Length = 294 Score = 88.6 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 46/178 (25%), Positives = 93/178 (52%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 +F P+ +D + R+V+ G P+ D + Q + F + + LG S+ Sbjct: 116 INEFNTQMPDIIDSMERAVKVGAPLHDIFFALSEQYQGSAKRLFLAMHDRLKLGHSVERV 175 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + MP QE F +T++S+QS+ GG LS L L + LR+R M+++V+ ++ E++ Sbjct: 176 MQFAAQQMPSQEFRFLTTLLSLQSETGGKLSHMLKQLGQTLRERSLMESRVRTITSESRT 235 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 SA ++ LP + ++Y ++ + + L+ D G +L ++ G++++R + F Sbjct: 236 SAKVLAILPPALIGVLYGSAKEHFDYLLRDATGQWILLYVVLSVVTGLLLIRQLTKFK 293 >gi|295395217|ref|ZP_06805425.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC 49030] gi|294971979|gb|EFG47846.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC 49030] Length = 290 Score = 88.3 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 70/185 (37%), Gaps = 5/185 (2%) Query: 4 LIKKRTAKFLDD--FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 I+ R +P A+D + VRAGL + +AV + + +R F Sbjct: 100 KIRARKTSVSRRTLWPEAIDHLSSGVRAGLSLPEAVCGLSARGPVALRPLFEVFAREYRA 159 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQ 120 S S +++R + + + G +L L LS+ LR+ +A++ Sbjct: 160 TGSFSLALNRFKESAADPVADRMVAALHITREVGGTDLGAMLKTLSQFLREDARTRAELT 219 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A A + + P+ V L+ T P + N +G +LL V L VM+ Sbjct: 220 ARQSWTVTGAKLGVAAPWVVLGLL-ATRPETADA-YNTAQGTVLLVVGLVISLCAYSVMK 277 Query: 181 LMINF 185 + Sbjct: 278 RIGRL 282 >gi|198284410|ref|YP_002220731.1| type II secretion system protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666085|ref|YP_002427078.1| tight adherence protein TadB, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248931|gb|ACH84524.1| type II secretion system protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518298|gb|ACK78884.1| tight adherence protein TadB, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 313 Score = 88.3 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 85/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ I R + + P LD +VR+ R G + A+ + PVR F +++ Q Sbjct: 128 IRYRIGLRRSAAILALPGFLDAVVRASRVGASLPAALLSATKDAHGPVREVFNQIMRRQQ 187 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + +++ + + +QE++ +TV+ + + GG L ++ LR R +A+ Sbjct: 188 SGTPIDQAMLTVGKRYQMQELAIIATVLRLNMRYGGRTDVVLERIADWLRGRVMAQAEFN 247 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + A I+ + ++ + + Y+ + G MLL ++ G++++ Sbjct: 248 ALSAETRLGALILSLMIPGLALYIVLMNHSYLQGMWAVSTGRMLLVAGGTLLVTGVVLLN 307 Query: 181 LMINFD 186 M Sbjct: 308 RMAKLR 313 >gi|163801323|ref|ZP_02195222.1| Flp pilus assembly protein TadB [Vibrio sp. AND4] gi|159174812|gb|EDP59612.1| Flp pilus assembly protein TadB [Vibrio sp. AND4] Length = 289 Score = 88.3 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 92/184 (50%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K K + F D F +L +I R++ +G ++ ++ + +R EF R+I+ + Sbjct: 102 LKEYHAKLSNYFEDKFAFSLRMISRNLISGRTIAASIESASRHTMGKIRIEFERIIKQIN 161 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +L E+++ P + + FS + + + GG++ ++L L++ L + ++ K Sbjct: 162 AGNTLEEALTTGENIYPYKGYTVFSANVKMSLKRGGSIKDSLDELAQDLVASQVIRKKTL 221 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +L+ E++ +A I+ LPF + ++ + L + G ++ + IG ++++ Sbjct: 222 SLTSESRGAAKILAVLPFIMLLVLKSFAVENFEYLFGEQYGKYIIIYVVTSVSIGFVLIK 281 Query: 181 LMIN 184 MI+ Sbjct: 282 RMID 285 >gi|264676897|ref|YP_003276803.1| type II secretion system protein [Comamonas testosteroni CNB-2] gi|262207409|gb|ACY31507.1| type II secretion system protein [Comamonas testosteroni CNB-2] Length = 405 Score = 88.3 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 57/182 (31%), Gaps = 11/182 (6%) Query: 4 LIKKRT----AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIE 57 IKKR K D + ++AG+P+ + ++ ++ V + Sbjct: 51 KIKKRRTRGGKKIKPKDIALFTRQLATMMKAGVPLLQSFDIVGRGNTNPNVTKLLNDIRS 110 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G SLS + + + + + G L L L+ + + +K+ Sbjct: 111 DVETGTSLSAAFRKFPL-----YFNSLYCNLVEAGEAAGILESLLDRLATYMEKTEAIKS 165 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 K+++ M + + + + V D LL + + + Sbjct: 166 KIKSALMYPTSVMIVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLLVMGISDYFVQYW 225 Query: 178 VM 179 + Sbjct: 226 WL 227 Score = 35.9 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 15/131 (11%), Positives = 39/131 (29%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ +A+ + G S + + R+ G SL+ +++ Sbjct: 275 WTRTLSTMFAAGVPLVEALDSVGGASGNYLYRNATDRIQSEVSTGTSLTVAMANA----- 329 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G + L + + + ME ++ + Sbjct: 330 -NIFPSMVLQMCAIGEESGAIDHMLGKAADFYESEVDEMVAGLSSLMEPIIIVFLGTLIG 388 Query: 138 FCVSTLVYFTS 148 V ++ Sbjct: 389 GIVVSMYLPIF 399 >gi|110833083|ref|YP_691942.1| hypothetical protein ABO_0222 [Alcanivorax borkumensis SK2] gi|110646194|emb|CAL15670.1| conserved hypothetical protein [Alcanivorax borkumensis SK2] Length = 268 Score = 88.3 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 75/182 (41%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + +KR + P +D ++R + AG + A+ + + R+ Sbjct: 81 NYRYQKRRRLIFESTPEVIDDVIRGIDAGRSLEQALVNALNDAPKVFFPLLFRLRSAVES 140 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + I + + ++F + + S G + L +SR LR ++ M+ + A Sbjct: 141 GRDYTGLIDDFSKLYRIPPLTFVAVALRTSSHYGSAVRPVLKKVSRSLRSQQEMRREFLA 200 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + E + +A LP + + + + +VL++ G +L + +++G +++ Sbjct: 201 ATAETRFTAMAFAVLPLVIGASLIGLNESFRDVLLDTESGQKMLMTSIGLIVVGTIIVFR 260 Query: 182 MI 183 M+ Sbjct: 261 MV 262 >gi|188592035|ref|YP_001796633.1| type II secretion system protein [Cupriavidus taiwanensis LMG 19424] gi|170938409|emb|CAP63396.1| Type II secretion system protein [Cupriavidus taiwanensis LMG 19424] Length = 308 Score = 88.3 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 45/182 (24%), Positives = 91/182 (50%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 H +++ K L P LD +VR + G V A + + P+R + + Q G Sbjct: 125 HRVRRLHKKLLSQLPGFLDGVVRLMTIGSSVPAAFQNSIANTEAPLRQCLVQAVHLQRAG 184 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L +++ ++ R ++E+ ++V+ + + GG + + +RDR+ + ++ AL Sbjct: 185 KELDQAVLQVGRAYKVEELVLVASVLRLSVRYGGRADVVMERTATFMRDREQAQRELMAL 244 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAW++G LP V+ ++ + GY+ ++ DP G +L AAA + G +++ + Sbjct: 245 SAETRLSAWVLGLLPLVVAGGLFTLNAGYILMMWKDPTGKTMLLSAAALEVAGALMLYRL 304 Query: 183 IN 184 Sbjct: 305 AK 306 >gi|311111714|ref|YP_003982936.1| type II secretion system protein [Rothia dentocariosa ATCC 17931] gi|310943208|gb|ADP39502.1| type II secretion system protein [Rothia dentocariosa ATCC 17931] Length = 284 Score = 88.3 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 73/183 (39%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H K R K +P+A+D + ++RAGL + +A+ + + +R F R Sbjct: 93 VNHRAKVREGKLWQLWPDAVDHLRSAIRAGLSLPEALIQLSYRGPYELREAFARFGSDYR 152 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVI-SVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 S++R+ Y+ + + G +L L LS LR+ +A++ Sbjct: 153 ATGDFVASLNRLKEYVADPVADNIVEALKIAREVGGSDLGRLLGTLSNFLRENARTRAEL 212 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 QA +A + P+ V L+ + + N G +L+ A +I +M Sbjct: 213 QARQSWTVNAARLACVAPWVVLMLMAT--QPAVRNIYNSFAGFVLMFAGAGLSVIAYRIM 270 Query: 180 RLM 182 + Sbjct: 271 LRI 273 >gi|300741823|ref|ZP_07071844.1| putative bacterial type II secretion system protein F domain protein [Rothia dentocariosa M567] gi|300381008|gb|EFJ77570.1| putative bacterial type II secretion system protein F domain protein [Rothia dentocariosa M567] Length = 284 Score = 88.3 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 73/183 (39%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H K R K +P+A+D + ++RAGL + +A+ + + +R F R Sbjct: 93 VNHRAKVREGKLWQLWPDAVDHLRSAIRAGLSLPEALIQLSYRGPYELREAFARFGSDYR 152 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVI-SVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 S++R+ Y+ + + G +L L LS LR+ +A++ Sbjct: 153 ATGDFVASLNRLKEYVADPVADNIVEALKIAREVGGSDLGRLLGTLSNFLRENARTRAEL 212 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 QA +A + P+ V L+ + + N G +L+ A +I +M Sbjct: 213 QARQSWTVNAARLACVAPWVVLMLMAT--QPAVRNIYNSFAGFVLMFAGAGLSVIAYRIM 270 Query: 180 RLM 182 + Sbjct: 271 LRI 273 >gi|320156057|ref|YP_004188436.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O] gi|319931369|gb|ADV86233.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O] Length = 294 Score = 87.9 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 46/178 (25%), Positives = 93/178 (52%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 +F P+ +D + R+V+ G P+ D + Q + F + + LG S+ Sbjct: 116 INEFNMQMPDIIDSMERAVKVGAPLHDIFFALSEQYQGSAKRLFLAMHDRLKLGHSVERV 175 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + MP QE F +T++S+QS+ GG LS L L + LR+R M+++V+ ++ E++ Sbjct: 176 MQFAAQQMPSQEFRFLTTLLSLQSETGGKLSHMLKQLGQTLRERSLMESRVRTITSESRT 235 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 SA ++ LP + ++Y ++ + + L+ D G +L ++ G++++R + F Sbjct: 236 SAKVLAILPPALIGVLYGSAKEHFDYLLRDATGQWILLYVVLSVVTGLLLIRQLTKFK 293 >gi|153853656|ref|ZP_01995036.1| hypothetical protein DORLON_01027 [Dorea longicatena DSM 13814] gi|149753811|gb|EDM63742.1| hypothetical protein DORLON_01027 [Dorea longicatena DSM 13814] Length = 258 Score = 87.9 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 66/182 (36%), Gaps = 6/182 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIETQHLGLSL 65 F F + + ++ G V +A + + E + + + + Sbjct: 77 FQKQFREMIQTLSSALNTGYSVENAFYETQKELKIQYPEEARISRELLLITRKLRMHIPV 136 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + + +P ++V F TV + GG++ + N + + D+ +K ++ L Sbjct: 137 EQVLEEFAEKVPSEDVKSFVTVFVTAKKSGGDMIGIIRNTTSQIGDKIEVKREIDTLLAA 196 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 K I+ +P+ + + + +M L + G ++ + + + ++ Sbjct: 197 KKYEFQIMSMVPYGIIAYMSLSFSDFMEELYGNVTGIGVMTLCLGIYVGAYYLGVRLLRI 256 Query: 186 DV 187 DV Sbjct: 257 DV 258 >gi|27365655|ref|NP_761183.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6] gi|27361803|gb|AAO10710.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6] Length = 294 Score = 87.9 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 46/178 (25%), Positives = 93/178 (52%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 +F P+ +D + R+V+ G P+ D + Q + F + + LG S+ Sbjct: 116 INEFSMQMPDIIDSMERAVKVGAPLHDIFFALSEQYQGSAKRLFLAMHDRLKLGHSVERV 175 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + MP QE F +T++S+QS+ GG LS L L + LR+R M+++V+ ++ E++ Sbjct: 176 MQFAAQQMPSQEFRFLTTLLSLQSETGGKLSHMLKQLGQTLRERSLMESRVRTITSESRT 235 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 SA ++ LP + ++Y ++ + + L+ D G +L ++ G++++R + F Sbjct: 236 SAKVLAILPPVLIGVLYGSAKEHFDYLLRDATGQWILLYVVLSVVTGLLLIRQLTKFK 293 >gi|255264846|ref|ZP_05344188.1| type II secretion system protein [Thalassiobium sp. R2A62] gi|255107181|gb|EET49855.1| type II secretion system protein [Thalassiobium sp. R2A62] Length = 323 Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 73/159 (45%), Gaps = 4/159 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + + R + FP++LD+++ V AG + ++ + + + SE+ V Sbjct: 160 VTKRQQTRQEAITNGFPDSLDMMLVCVEAGQSLDQSILRVSQELKSGFPDLASEYEIVSH 219 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + + M + +++ F TV+ G +++EAL + +RD++ M+A Sbjct: 220 EMKAGKDKTSVLRDMSERCGVPDIASFVTVLIQSQSFGTSIAEALRVYAGEMRDKRVMRA 279 Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A ++ K + A ++ ++P + L+ + G L Sbjct: 280 EEKANTLPTKMTLATMMLTVPPLLIILIGPSVYGIAETL 318 >gi|33596972|ref|NP_884615.1| hypothetical protein BPP2379 [Bordetella parapertussis 12822] gi|33566423|emb|CAE37676.1| putative membrane protein [Bordetella parapertussis] Length = 306 Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 43/179 (24%), Positives = 77/179 (43%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K + + P LD +VR + G V+ A +G P+ +R G L Sbjct: 126 KADRRRMVHQLPTFLDALVRLITIGNSVNAAFQNALGSVEQPLLEVLQRADSQVRSGKDL 185 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ ++ R L+E+ S VI++ + GG + L ++ +RD + + ++ ALS E Sbjct: 186 DAALHQVSRQYQLRELFLVSAVIALALRFGGRSDQVLERMAAFMRDLEQARDELTALSAE 245 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + SAWI+ LP ++ + + + +DP G LL A G + M Sbjct: 246 VRLSAWILALLPIGLALFIIIFNNQLFMGMWHDPMGFRLLVFAMLLQAGGSYWLYRMAR 304 >gi|221068971|ref|ZP_03545076.1| type II secretion system protein [Comamonas testosteroni KF-1] gi|220713994|gb|EED69362.1| type II secretion system protein [Comamonas testosteroni KF-1] Length = 405 Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 56/182 (30%), Gaps = 11/182 (6%) Query: 4 LIKKRT----AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIE 57 IKKR K D + ++AG+P+ + ++ ++ V + Sbjct: 51 KIKKRRTRGGKKIKPKDIALFTRQLATMMKAGVPLLQSFDIVGRGNTNPNVTKLLNDIRS 110 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G SLS + + + + G L L L+ + + +K+ Sbjct: 111 DVETGTSLSAAFRKFPL-----YFDSLYCNLVEAGEAAGILESLLDRLATYMEKTEAIKS 165 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 K+++ M + + + + V D LL + + + Sbjct: 166 KIKSALMYPTSVMIVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLLVMGISEYFVQYW 225 Query: 178 VM 179 + Sbjct: 226 WL 227 Score = 35.9 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 15/131 (11%), Positives = 39/131 (29%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ +A+ + G S + + R+ G SL+ +++ Sbjct: 275 WTRTLSTMFAAGVPLVEALDSVGGASGNYLYKNATDRIQSEVSTGTSLTVAMANA----- 329 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G + L + + + ME ++ + Sbjct: 330 -NIFPSMVLQMCAIGEESGAIDHMLGKAADFYESEVDEMVAGLSSLMEPIIIVFLGTLIG 388 Query: 138 FCVSTLVYFTS 148 V ++ Sbjct: 389 GIVVSMYLPIF 399 >gi|87310970|ref|ZP_01093095.1| hypothetical protein DSM3645_15370 [Blastopirellula marina DSM 3645] gi|87286260|gb|EAQ78169.1| hypothetical protein DSM3645_15370 [Blastopirellula marina DSM 3645] Length = 317 Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 93/184 (50%), Gaps = 3/184 (1%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 H +RT P A I R++RAG + A+ ++ P+ EF E QHLG Sbjct: 136 HRRLQRTEMLTQQLPEAFSAISRALRAGQGLPTAIQMVANDFPKPLSEEFTHYYEQQHLG 195 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++ ++ MVR + + E+ F+ + VQ + GGNL+E L L+ ++R R ++ +V+AL Sbjct: 196 VANEVALRDMVRRVDVMELRIFAVALIVQQRAGGNLAELLKKLADLIRKRVKLRRRVKAL 255 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + A ++ ++P V + +P Y +VL + +L A IG ++ + Sbjct: 256 TGEGRMQAVVLIAMPVLVLAALAVVAPDYSSVLWEH---YEILIGCAISQCIGAFLISRI 312 Query: 183 INFD 186 +N D Sbjct: 313 VNID 316 >gi|33593027|ref|NP_880671.1| hypothetical protein BP1999 [Bordetella pertussis Tohama I] gi|33563402|emb|CAE42279.1| putative membrane protein [Bordetella pertussis Tohama I] gi|332382439|gb|AEE67286.1| hypothetical protein BPTD_1969 [Bordetella pertussis CS] Length = 306 Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 43/179 (24%), Positives = 77/179 (43%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K + + P LD +VR + G V+ A +G P+ +R G L Sbjct: 126 KADRRRMVHQLPTFLDALVRLITIGNSVNAAFQNALGSVEQPLLEVLQRADSQVRSGKDL 185 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ ++ R L+E+ S VI++ + GG + L ++ +RD + + ++ ALS E Sbjct: 186 DAALHQVSRQYQLRELFLVSAVIALALRFGGRSDQVLERMAAFMRDLEQARDELTALSAE 245 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + SAWI+ LP ++ + + + +DP G LL A G + M Sbjct: 246 VRLSAWILALLPIGLALFIIIFNNQLFMGMWHDPMGFRLLVFAMLLQAGGSYWLYRMAR 304 >gi|224824220|ref|ZP_03697328.1| type II secretion system protein [Lutiella nitroferrum 2002] gi|224603639|gb|EEG09814.1| type II secretion system protein [Lutiella nitroferrum 2002] Length = 314 Score = 87.9 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 67/165 (40%), Gaps = 4/165 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + ++ R + ++FP+A+D+++ V AGL + A+ + + S + E V Sbjct: 148 LSRRVENRQREIFNNFPDAIDLLLVCVEAGLGLDAALLKVGEEMRIKSPILADELHLVNL 207 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + +QEV ++ + G ++ E+L + LR ++ ++A Sbjct: 208 ELRAGSTKERALRNLAIRTGVQEVDTLVAMLIQSDRFGTSIGESLRVHADDLRTKRRLRA 267 Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + A + I P + L+ VL+ G Sbjct: 268 EEAAAKIPLKLLFPLIFCIFPALLLVLLGPAFIQIYRVLLPTLGG 312 >gi|163840095|ref|YP_001624500.1| flp pilus assembly protein [Renibacterium salmoninarum ATCC 33209] gi|162953571|gb|ABY23086.1| type II secretion system protein [Renibacterium salmoninarum ATCC 33209] Length = 284 Score = 87.9 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 77/183 (42%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ K+R A + +P+ +D + ++RAGL +++A+ + + +P+R FR Sbjct: 93 VRRRAKRRIAVLRELWPDVVDHLRSAIRAGLSLAEALIQLAEKGPEPLRPYFRDFGADYR 152 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKV 119 G S S+ + + + + + G +L L LS LR+ ++++ Sbjct: 153 AGGSFETSLDLLKERLADPVADRIFEALRLTREVGGSDLGLLLGTLSEFLRESARTRSEL 212 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +A +A I + P+ V L+ + N P G +LL ++ +M Sbjct: 213 EARQSWTVNAARIAVAAPWIVLVLLAAQPNALLA--YNSPSGWILLLAGLIISVVCYRLM 270 Query: 180 RLM 182 + Sbjct: 271 LRI 273 >gi|307295328|ref|ZP_07575167.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] gi|306878831|gb|EFN10050.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] Length = 297 Score = 87.5 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 45/185 (24%), Positives = 91/185 (49%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + R ++ P +D + + G ++ A+ + + V V Sbjct: 111 VRRRAQVRVEALIEALPYYIDAVRQMQAVGNSLAQALDRALADAPGVVWGFIAPVARRLE 170 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG +++++ + + + E+S + I + GG++S L NL+ ILR+R +K +++ Sbjct: 171 LGAPVADAMQMLAERLRVPEISMLAAAIRTNMRYGGSISAVLLNLANILRERIRIKRELK 230 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A EA+ S ++ +P L+ +PGY++ + DPRGH L VA A +G++VMR Sbjct: 231 AAISEARISGRVLIVMPLAAMALLVAMNPGYVDFFLRDPRGHRLALVAMALQGMGMLVMR 290 Query: 181 LMINF 185 ++ Sbjct: 291 RVMRL 295 >gi|148655425|ref|YP_001275630.1| type II secretion system protein [Roseiflexus sp. RS-1] gi|148567535|gb|ABQ89680.1| type II secretion system protein [Roseiflexus sp. RS-1] Length = 311 Score = 87.5 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 1/158 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + IKKR + P+ALD++ V AGL A+ + + DP+ EF+RV+ Sbjct: 151 LGQQIKKRKKAIVKALPDALDLLCICVEAGLSFDQAMQRLTEKWDDPLSKEFKRVLSDTR 210 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG +++ M+ + +V F + QLG ++ L S +R R+ +A+ + Sbjct: 211 LGRPRRDAMKDMIDRCGVDDVQTFIGAVIQAEQLGVSIGRILRIQSDQMRIRRRQRAEEE 270 Query: 121 ALSMEAKA-SAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 A K + P ++ P M L Sbjct: 271 AHKAPIKMLFPMVFLIFPALFIVILGPAVPRIMKSLGG 308 >gi|331089204|ref|ZP_08338106.1| hypothetical protein HMPREF1025_01689 [Lachnospiraceae bacterium 3_1_46FAA] gi|330405756|gb|EGG85285.1| hypothetical protein HMPREF1025_01689 [Lachnospiraceae bacterium 3_1_46FAA] Length = 249 Score = 87.5 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 83/193 (43%), Gaps = 6/193 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRR 54 ++ L +K+ +F F NA+ + +++AG V +A+ + +R EFR+ Sbjct: 57 LRDLCRKKEKEFRVQFSNAIQAMGAALKAGYSVENAIREAEKDLAPMYEENVRIRKEFRK 116 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 ++ + + + + M ++ F TV S GG+ + N +I+ + + Sbjct: 117 MVHQLDMKMPAVSVMEQFSERMKQEDTEDFVTVFSSAKMSGGDSISIIRNAVKIISGKID 176 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + ++Q + K I+ ++PF + + T +++VL + G + + + Sbjct: 177 TEQEIQTMFASKKLEFEIMCAVPFFIILYMKLTFGEFLSVLYENATGRCFMTICLIVYIA 236 Query: 175 GIMVMRLMINFDV 187 R +I+ +V Sbjct: 237 AYSFGRKIIHIEV 249 >gi|153815434|ref|ZP_01968102.1| hypothetical protein RUMTOR_01669 [Ruminococcus torques ATCC 27756] gi|145847293|gb|EDK24211.1| hypothetical protein RUMTOR_01669 [Ruminococcus torques ATCC 27756] Length = 205 Score = 87.5 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 83/193 (43%), Gaps = 6/193 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRR 54 ++ L +K+ +F F NA+ + +++AG V +A+ + +R EFR+ Sbjct: 13 LRDLCRKKEKEFRVQFSNAIQAMGAALKAGYSVENAIREAEKDLAPMYEENVRIRKEFRK 72 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 ++ + + + + M ++ F TV S GG+ + N +I+ + + Sbjct: 73 MVHQLDMKMPAVSVMEQFSERMKQEDTEDFVTVFSSAKMSGGDSISIIRNAVKIISGKID 132 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + ++Q + K I+ ++PF + + T +++VL + G + + + Sbjct: 133 TEQEIQTMFASKKLEFEIMCAVPFFIILYMKLTFGEFLSVLYENAAGRCFMTICLIVYIA 192 Query: 175 GIMVMRLMINFDV 187 R +I+ +V Sbjct: 193 AYSFGRKIIHIEV 205 >gi|220927957|ref|YP_002504866.1| Flp pilus assembly protein TadB-like protein [Clostridium cellulolyticum H10] gi|219998285|gb|ACL74886.1| Flp pilus assembly protein TadB-like protein [Clostridium cellulolyticum H10] Length = 247 Score = 87.5 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 41/193 (21%), Positives = 85/193 (44%), Gaps = 7/193 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA-------VIVGQSSDPVRSEFRR 54 K +I+KR + F + L + S+ AG P+ A V+ + E + Sbjct: 55 KQIIEKRKNELNLQFKDLLISLSSSLSAGKPLEKAFVGALSDLYVLYPSDDAYIVRETKI 114 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 +I L +S+ E++S + ++ FS VI + + GGNL +A+ N SRI+ ++ Sbjct: 115 IINKLSLNVSIEEAVSDFAERSDIDDIKNFSDVIIICKRTGGNLVDAIKNSSRIISEKIE 174 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 M +++ L K ++ +P + ++ T+ Y+N + G + + + Sbjct: 175 MAQEIETLLSSRKLEQKVLNIMPIAMIFILSTTATEYINPVFTTVTGRIAATLCLILLTA 234 Query: 175 GIMVMRLMINFDV 187 + + +IN + Sbjct: 235 AYFISKRIINIKM 247 >gi|72162675|ref|YP_290332.1| integral membrane protein [Thermobifida fusca YX] gi|71916407|gb|AAZ56309.1| putative integral membrane protein [Thermobifida fusca YX] Length = 273 Score = 87.5 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 60/140 (42%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +KR + P+ LD++ +V AGL A+A + + SEF+ + LG S Sbjct: 117 KRKRQEEIQKQLPDFLDVLAVTVSAGLSFRQALARVADAMPGVLASEFQLALRQMELGTS 176 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ + + + + F T + +LG LS+ L LS +R + +A + Sbjct: 177 RRDAFAALRERNSNEALGRFITALQQAEELGAPLSQTLHALSTDMRREDAQFLRRKAQHL 236 Query: 125 EAKASAWIIGSLPFCVSTLV 144 + +A ++ + ++ Sbjct: 237 NPRVTAVTAATMLPGLLLII 256 >gi|254483273|ref|ZP_05096505.1| Bacterial type II secretion system protein F domain [marine gamma proteobacterium HTCC2148] gi|214036496|gb|EEB77171.1| Bacterial type II secretion system protein F domain [marine gamma proteobacterium HTCC2148] Length = 283 Score = 87.5 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 81/174 (46%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + + S+++G+ + A + +V P+ EF + E G + ++ Sbjct: 110 AQTADVMTALSASIKSGMTIEQAFSEMVDNMYPPISEEFALIRERIDAGQPVIAAVKSAD 169 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + +S I + + GG L+ + L+ R+ + ++ +V+ + + SA I+ Sbjct: 170 ERLQVPRLSLIFQTICISLERGGRLASLMDRLAESTREIERVEERVRTETAGLRLSARIM 229 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 +PF + L+Y P + +L ++ G+++L +A A + +M+ +I D+ Sbjct: 230 FLMPFFICGLLYLIEPDQVMLLFDNLVGNIVLVIAIAMDISAYFIMKKLIELDI 283 >gi|331003046|ref|ZP_08326558.1| hypothetical protein HMPREF0491_01420 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413090|gb|EGG92465.1| hypothetical protein HMPREF0491_01420 [Lachnospiraceae oral taxon 107 str. F0167] Length = 227 Score = 87.5 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 85/192 (44%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55 K LI + K + +F A+ II + AG + +++ + + + + EF + Sbjct: 36 KELINVKKRKLVLEFKEAIMIISSLLSAGYSLENSIKEALVELRLLYSKDNLIIKEFEYI 95 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + ++ +S+ + + +++ F+ V+ + + GG L +++ ++ D+ + Sbjct: 96 NQLIYMNISVERAFDDLAYRSHSEDIRSFAKVLRIAKRSGGELVSIISHTVNVIADKVRI 155 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K ++ ++ + ++ P + + +SPG+ N++ G + + L Sbjct: 156 KEEIITMTAAKRFEQSVMNVFPLFIVLYIDISSPGFFNIMYTTIIGRICMSFGLIMYLFA 215 Query: 176 IMVMRLMINFDV 187 I + + ++N +V Sbjct: 216 IYISKGLLNIEV 227 >gi|94312589|ref|YP_585798.1| type II secretion system protein, pilus assembly, transmembrane part [Cupriavidus metallidurans CH34] gi|93356441|gb|ABF10529.1| type II secretion system protein, pilus assembly, transmembrane part [Cupriavidus metallidurans CH34] Length = 309 Score = 87.1 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 50/181 (27%), Positives = 87/181 (48%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 I++ K L P LD +VR + G V A V + P+R +VI Q G Sbjct: 127 RIRRIKEKMLRQLPGFLDGVVRLMTIGSSVPAAFQNSVANTEPPLRQCLVQVIHLQRAGK 186 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L +++ +M R L E+ S+V+ + + GG + + +RDR+ + ++ ALS Sbjct: 187 ELDQAVLQMGRAYDLDELVIVSSVLRLSQRYGGRADVVMERTATFMRDREEAQRELMALS 246 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAW++G LP V ++ + GY+ ++ DP G +L AA + G ++ + Sbjct: 247 AETRMSAWVLGLLPLIVGGGMFVFNAGYILLMWRDPGGRAMLLTAAGLEVAGAFLLYRLA 306 Query: 184 N 184 Sbjct: 307 R 307 >gi|116694143|ref|YP_728354.1| flp pilus assembly protein TadB [Ralstonia eutropha H16] gi|113528642|emb|CAJ94989.1| flp pilus assembly protein TadB [Ralstonia eutropha H16] Length = 308 Score = 87.1 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 89/182 (48%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + +++ K L P LD +VR + G V A + + P+R + + Q G Sbjct: 125 NRVRRLHKKLLSQLPGFLDGVVRLMTIGSSVPAAFQNSIANTEAPLRQCLVQAVHLQRAG 184 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L +++ ++ R ++E+ ++V+ + + GG + + +RDR+ + ++ AL Sbjct: 185 KELDQAVLQVGRVYKVEELVLVASVLRLSVRYGGRADVVMERTAAFMRDREQAQRELMAL 244 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAWI+G LP V+ ++ + GY+ ++ DP G +L A A + G ++ + Sbjct: 245 SAETRLSAWILGLLPLVVAGGLFMLNAGYILMMWKDPTGKTMLLSALALEIAGAFMLYRL 304 Query: 183 IN 184 Sbjct: 305 AK 306 >gi|49085940|gb|AAT51316.1| PA4301 [synthetic construct] Length = 295 Score = 87.1 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 44/184 (23%), Positives = 94/184 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R + + P LD +VRS+ AG + DA+ V + +P+R F Sbjct: 109 LGMLYQRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVENAEEPLRDIFTLARNHVL 168 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L E++ + ++E+ + +SV + GGN S+ L ++ +++ +R+ + ++ Sbjct: 169 LGIHLPEALQEVAELYEVEELRILALGVSVNHRYGGNTSDLLDSIVKLIHEREKLSRQLH 228 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + SA+++ +P + + ++PGY+ + D G LL + L+G + Sbjct: 229 AMTGETRISAYVLAGVPSALGGYILASNPGYLLNMWADGTGRFLLLASLGLQLLGCYALW 288 Query: 181 LMIN 184 M+ Sbjct: 289 RMLK 292 >gi|159043673|ref|YP_001532467.1| type II secretion system protein [Dinoroseobacter shibae DFL 12] gi|157911433|gb|ABV92866.1| type II secretion system protein [Dinoroseobacter shibae DFL 12] Length = 331 Score = 87.1 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 69/159 (43%), Gaps = 4/159 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + I KR + + FP++LD+++ V AG + A+ + + + EF V Sbjct: 167 VDKRIDKRQEEITNGFPDSLDLMLVCVEAGQGLDQAIIRVAHEIRAGYPDLADEFEMVAF 226 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + M + +V+ F TV+ G ++++AL + +RD++ M+A Sbjct: 227 EIKAGKDKITVLKDMAERCGVGDVTSFVTVLIQSQSFGTSIADALRVYAGEMRDKRVMRA 286 Query: 118 KVQALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A + K ++ ++P + L+ + L Sbjct: 287 EEKANVLPTKLTLGTMMFTVPPLLIILIGPSMWSIYESL 325 >gi|329905443|ref|ZP_08274133.1| type II secretion system protein [Oxalobacteraceae bacterium IMCC9480] gi|327547600|gb|EGF32398.1| type II secretion system protein [Oxalobacteraceae bacterium IMCC9480] Length = 161 Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 89/161 (55%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 +RAG+ ++ A +V +S P+ EF ++ Q LG++L +S++ + R +P + + Sbjct: 1 MRAGVGLNAATQQLVAESQPPLAQEFSLMLREQRLGVTLEQSLTNLSRRIPTTTTTLVVS 60 Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 + + ++ GG L+EAL S +R R M+ K+ AL+ + K AW++G LP + ++ Sbjct: 61 AMRIAAETGGGLAEALERTSHTVRSRLQMEGKIGALTAQGKLQAWVVGMLPLSLMAVLNK 120 Query: 147 TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 P M+ L + G L V A ++G++++R ++ DV Sbjct: 121 MEPESMSYLWHSQVGWATLAVIAFLEIMGVVLIRKIVAIDV 161 >gi|89901674|ref|YP_524145.1| type II secretion system protein [Rhodoferax ferrireducens T118] gi|89346411|gb|ABD70614.1| type II secretion system protein [Rhodoferax ferrireducens T118] Length = 405 Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 24/182 (13%), Positives = 60/182 (32%), Gaps = 10/182 (5%) Query: 3 HLIKKRTAKFL----DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIE 57 + K+R D + ++AG+P+ A ++ + +P V + Sbjct: 51 KIKKRRMRAGKSIKPKDLAIFTRQLATMMKAGVPLLQAFDIVGRGNPNPSVTKLLNDIRT 110 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G SLS + + + + G L + L L+ + + +K+ Sbjct: 111 DVETGTSLSVAFRKFPL-----YFDNLYCNLIEAGESAGILDQLLDRLAVYMEKTEAIKS 165 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 K+++ M + + + + V + D L+ +A + + + Sbjct: 166 KIKSALMYPISVLIVAFVVTAVIMIFVVPAFKEVFSNFGADLPAPTLVVIAISEIFVKYW 225 Query: 178 VM 179 + Sbjct: 226 WL 227 >gi|20094143|ref|NP_613990.1| hypothetical protein MK0706 [Methanopyrus kandleri AV19] gi|19887150|gb|AAM01920.1| Predicted membrane protein [Methanopyrus kandleri AV19] Length = 362 Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 69/180 (38%), Gaps = 2/180 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI++R + P A+ + V AGL + +++ I + EF RVI + G Sbjct: 177 LIRRREGEIARQLPYAIRQMATEVSAGLSLIESMKSISESDYGALSEEFERVIREINSGT 236 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++ ++ RM + + I+ + G N+++ L L+ + + + Sbjct: 237 PINVALQRMANRWNVDGLRTMVRFITQAMESGANIAKTLMTLADEIAHELRQRYREYGHK 296 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMN--VLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++A A +I+ +L V ++ L+ P ++ M + + Sbjct: 297 LQALAFPYIMLTLVIPTLVTVAMLLAANLSGAFLVPPPLFGPMIAGMVGVMAGIFLFIFK 356 >gi|284048519|ref|YP_003398858.1| Type II secretion system F domain protein [Acidaminococcus fermentans DSM 20731] gi|283952740|gb|ADB47543.1| Type II secretion system F domain protein [Acidaminococcus fermentans DSM 20731] Length = 309 Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 37/146 (25%), Positives = 74/146 (50%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H+I+ R K + P+ LD++ SV+AGL + A+ +V + P+ EFRR++ Sbjct: 153 LNHIIRNRQTKIIRQLPDVLDLLSISVQAGLSLDGAMRKVVERMEGPLIDEFRRMLRDVR 212 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G++ S+ M R +Q+V F + +LG ++S+ L + +RD + +A+ Q Sbjct: 213 MGMTRRRSMQLMARRCDVQDVYLFVMSVVQSERLGASMSDTLVIQADNMRDLRRQRARTQ 272 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146 A+ K ++ + + +V Sbjct: 273 AMKAPVKMIFPLVFCIFPAIFVVVLL 298 >gi|283457756|ref|YP_003362343.1| Flp pilus assembly protein TadB [Rothia mucilaginosa DY-18] gi|283133758|dbj|BAI64523.1| Flp pilus assembly protein TadB [Rothia mucilaginosa DY-18] Length = 315 Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 73/183 (39%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H + A+ +P+A+D + ++RAGL + +A+ + + + +R F Sbjct: 124 VNHRARAADARIWQLWPDAVDHLRSAIRAGLSLPEALIQLSYRGPEELRDAFAHFSRDYR 183 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVI-SVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 S++R+ Y+ + + G +L + L LS LRD ++++ Sbjct: 184 ASGEFVPSLNRLKEYLSDPVADTIIEALKIAREVGGSDLGKLLGTLSDFLRDNARTRSEL 243 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A +A + P+ V L+ ++ N G ML+ AA L +M Sbjct: 244 LARQSWTVNAARLSCVAPWFVLCLMAT--QPAARMVYNSFAGAMLMIAGAAISLAAYRLM 301 Query: 180 RLM 182 + Sbjct: 302 LRI 304 >gi|15599497|ref|NP_252991.1| TadB [Pseudomonas aeruginosa PAO1] gi|107100115|ref|ZP_01364033.1| hypothetical protein PaerPA_01001136 [Pseudomonas aeruginosa PACS2] gi|218893393|ref|YP_002442262.1| TadB [Pseudomonas aeruginosa LESB58] gi|254244888|ref|ZP_04938210.1| hypothetical protein PA2G_05761 [Pseudomonas aeruginosa 2192] gi|9950523|gb|AAG07689.1|AE004846_6 TadB [Pseudomonas aeruginosa PAO1] gi|126198266|gb|EAZ62329.1| hypothetical protein PA2G_05761 [Pseudomonas aeruginosa 2192] gi|218773621|emb|CAW29435.1| TadB [Pseudomonas aeruginosa LESB58] Length = 294 Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 44/184 (23%), Positives = 94/184 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R + + P LD +VRS+ AG + DA+ V + +P+R F Sbjct: 109 LGMLYQRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVENAEEPLRDIFTLARNHVL 168 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L E++ + ++E+ + +SV + GGN S+ L ++ +++ +R+ + ++ Sbjct: 169 LGIHLPEALQEVAELYEVEELRILALGVSVNHRYGGNTSDLLDSIVKLIHEREKLSRQLH 228 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + SA+++ +P + + ++PGY+ + D G LL + L+G + Sbjct: 229 AMTGETRISAYVLAGVPSALGGYILASNPGYLLNMWADGTGRFLLLASLGLQLLGCYALW 288 Query: 181 LMIN 184 M+ Sbjct: 289 RMLK 292 >gi|312883758|ref|ZP_07743477.1| Flp pilus assembly protein TadB, putative [Vibrio caribbenthicus ATCC BAA-2122] gi|309368507|gb|EFP96040.1| Flp pilus assembly protein TadB, putative [Vibrio caribbenthicus ATCC BAA-2122] Length = 302 Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 88/182 (48%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 K++ +F L +I R+V AGL V A++ + + EF R+ + LG Sbjct: 116 MRKKQQIEEFEQSMVQVLGLISRAVSAGLSVPQAISQVTESQGGLMSREFSRIEDQLALG 175 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + +++ +P + +F+ + + GG L E L +LSR L + + M+ KV++L Sbjct: 176 HGMRYALNEACIRLPYKAFRYFTIALLLNQSNGGQLREILHSLSRTLHENRAMQKKVKSL 235 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + +A + LP + TLV + +P +LI G +L A +L+G + + LM Sbjct: 236 TSEPRTAARFLSLLPLGLLTLVAWINPSLFLLLIETEPGQSVLIYCAVSILVGAITLHLM 295 Query: 183 IN 184 Sbjct: 296 TK 297 >gi|160878194|ref|YP_001557162.1| Flp pilus assembly protein TadB-like protein [Clostridium phytofermentans ISDg] gi|160426860|gb|ABX40423.1| Flp pilus assembly protein TadB-like protein [Clostridium phytofermentans ISDg] Length = 247 Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 77/192 (40%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55 + + + R K +F + + + ++ AG V +A + + EF+ + Sbjct: 56 RKMAEDRKKKLNTEFLDGIHSLSVALEAGYSVENAFKAAIKDLGLMYSKEALIMKEFQCI 115 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + + + + +I L++V FS V + GG+L + + + ++ + Sbjct: 116 VSQINHNIPIENAIGEFANRSKLEDVECFSEVFKTAKRTGGDLVAIIKMTGKTIGEKVEV 175 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 +++ L K A I+ +PF + + SP ++ L ++ G + + + L Sbjct: 176 MREIETLITAKKMEANIMKLVPFGILGYMLLGSPQFLKPLYHNLFGIIFMTILLGIYLFL 235 Query: 176 IMVMRLMINFDV 187 ++ +I V Sbjct: 236 TKLVDKIIAIRV 247 >gi|325264273|ref|ZP_08131004.1| putative bacterial type II secretion system protein F domain protein [Clostridium sp. D5] gi|324030344|gb|EGB91628.1| putative bacterial type II secretion system protein F domain protein [Clostridium sp. D5] Length = 224 Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 75/188 (39%), Gaps = 6/188 (3%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRVIETQ 59 +++ +F + F ++ + ++ G V +AV +R EF R+I Sbjct: 37 REKEQEFREQFRVSIQTMASALNIGYSVENAVRETARDLKPLFRRDSRIRKEFERMIHQL 96 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + + + +S + + ++V F V S + GG+ L + R + D+ + ++ Sbjct: 97 DINQPVEQVMSELADRVSQEDVENFVIVFSAAKRTGGDSISILRSAVRDISDKIEAEKEI 156 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 Q L K ++ +PF + + P +M VL + G L+ V + Sbjct: 157 QTLLASKKLEFKVMCIIPFGILFYMRLAFPEFMQVLYGNLAGAALMTVCLGIYAAAYRMG 216 Query: 180 RLMINFDV 187 ++ +V Sbjct: 217 EKLVEIEV 224 >gi|332284567|ref|YP_004416478.1| type II secretion system protein [Pusillimonas sp. T7-7] gi|330428520|gb|AEC19854.1| type II secretion system protein [Pusillimonas sp. T7-7] Length = 282 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 99/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + K R +F + P+ L + ++RAG + A+ IV QS P+ EF ++ Q Sbjct: 96 IGRIRKLRLQRFDEQLPDLLQALAGALRAGAGLQSALKHIVAQSPAPLSQEFGLMLRQQR 155 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ ++++ + R MP + + +++ +Q GGNL+E L +++ LR R + ++VQ Sbjct: 156 MGIGFEQALADLYRRMPFEGTGLVVSALTIAAQSGGNLAETLESIAATLRARLRLLSRVQ 215 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + + AWI+ LP ++ ++++ P M L P G ++ ++GI +R Sbjct: 216 ALTSQGRLQAWIMAGLPPVLAIVLHYLDPDSMRALWETPAGWSVVAAIVTMEVLGIWFIR 275 Query: 181 LMINFDV 187 ++ + Sbjct: 276 RIVAITI 282 >gi|260427288|ref|ZP_05781267.1| type II/IV secretion system protein, TadC subfamily [Citreicella sp. SE45] gi|260421780|gb|EEX15031.1| type II/IV secretion system protein, TadC subfamily [Citreicella sp. SE45] Length = 324 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 71/148 (47%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + +++R + + FP+ALD+++ V AG + ++ + + S + EF + Sbjct: 161 ITKRVEERKKQIEEGFPDALDMMLVCVEAGQSLDQSIVRVSKELRASYPALADEFEIISH 220 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S ++ M +Q+VS F TV++ + G ++++AL + +RD++ M+A Sbjct: 221 EMRAGKDKSNVLNDMGERCGVQDVSSFVTVLNQAANFGTSIADALRIYASEMRDKRVMRA 280 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A + K + + + ++ Sbjct: 281 EEKANKLPTKMTLTTMMLTVPPLLIILV 308 >gi|269126091|ref|YP_003299461.1| type II secretion system protein [Thermomonospora curvata DSM 43183] gi|268311049|gb|ACY97423.1| type II secretion system protein [Thermomonospora curvata DSM 43183] Length = 307 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 71/149 (47%), Gaps = 2/149 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + P+ LD++V SV AGL A+ + +S P+ E RV++ +G S + Sbjct: 155 RRQEELKRSLPDTLDLLVVSVEAGLGFDAALTRVAQHTSGPLAEELARVLQEIRIGKSRT 214 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ M + ++EV F + S+LG ++ L +R R ++ +A+ A + Sbjct: 215 EALRSMGERVAVEEVRTFIAALVQASELGMSIGVVLREQAREARLKRRQRAEEMAQKVPV 274 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 K ++ + + + PG ++++ Sbjct: 275 KVMFPVVLCILPALI--ITVVGPGVLSIM 301 >gi|254466278|ref|ZP_05079689.1| type II/IV secretion system protein, TadC subfamily [Rhodobacterales bacterium Y4I] gi|206687186|gb|EDZ47668.1| type II/IV secretion system protein, TadC subfamily [Rhodobacterales bacterium Y4I] Length = 326 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 76/158 (48%), Gaps = 4/158 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + I++R K + FP+ALD+++ V AG + A+ + + S + EF V Sbjct: 164 ITRRIEERKQKITEGFPDALDMMLVCVEAGQSLDQAIVRVAKELHASYPDLAEEFEVVAY 223 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + M +Q++S F TV+ + G ++++AL + +RD++ M+A Sbjct: 224 EMKAGKEKDRVLRDMGTRCGVQDISSFVTVMIQSASFGTSIADALRVYAGEMRDKRVMRA 283 Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154 + A + K + A + ++P + LV + G MN+ Sbjct: 284 EEAANKLPVKMTLATMGLTVPPLLIILVGPSIQGIMNM 321 >gi|119717342|ref|YP_924307.1| type II secretion system protein [Nocardioides sp. JS614] gi|119538003|gb|ABL82620.1| type II secretion system protein [Nocardioides sp. JS614] Length = 304 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 1/149 (0%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R+ + P+A+D++ SV AGL AV + + P+ E RV+ LG S S Sbjct: 156 RSERIRRALPDAIDLLTISVEAGLGFDAAVQQVAQHTEGPLADELSRVLREMQLGQSRSA 215 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + + E+ F + LG +++ L SR +R ++ A+ +A + K Sbjct: 216 ALRSLSARTTVPELRGFVGAMVQADALGIPIAQVLRVQSREIRVKRRQHAEERAQQVPVK 275 Query: 128 AS-AWIIGSLPFCVSTLVYFTSPGYMNVL 155 + I LP ++ M+ Sbjct: 276 ITVPLIFCILPCLFVVVLGPAVLNIMDTF 304 >gi|91788419|ref|YP_549371.1| type II secretion system protein [Polaromonas sp. JS666] gi|91697644|gb|ABE44473.1| type II secretion system protein [Polaromonas sp. JS666] Length = 314 Score = 85.9 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 71/165 (43%), Gaps = 4/165 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +K+LI +R + + FP+ALD++ V AGL + A+A + + S + E + V Sbjct: 148 LKNLISRRQREIFESFPDALDLMTVCVEAGLAMDAALARVASEIGLKSAVLSEELQLVTL 207 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S +++ + + +V ++ + G +++++L S LR ++ +A Sbjct: 208 ELRAGSSKEKALRNLALRTGVDDVDALVAMLIQSERFGTSIADSLRVQSDQLRTKRRQRA 267 Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + QA + I P + L+ VL+ G Sbjct: 268 EEQAAKIALKLLFPLIFFIFPSLLVVLMGPAFIQIYRVLLPTMAG 312 >gi|163857688|ref|YP_001631986.1| putative Flp pilus assembly protein [Bordetella petrii DSM 12804] gi|163261416|emb|CAP43718.1| putative Flp pilus assembly protein [Bordetella petrii] Length = 307 Score = 85.9 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 75/181 (41%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +R + D P LD +VR + G ++ A +S+P+R + Sbjct: 125 RADRRRGRMFDQLPEMLDTMVRLITIGNSMAAAFQAASANTSEPLREVVEKAAHLSRSTQ 184 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L +++ + R +E+ + V+ V + GG L ++ +RD + ++ A S Sbjct: 185 ELDAALANVARQYGFEELRLLAAVVRVAQKYGGRSDVVLERIAAFMRDVAQARGELVAAS 244 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAW++ +P ++ + T+ + +DP G +L A L G + M Sbjct: 245 AEIRLSAWVLALMPLGIACYIMLTNNAMFMDMWDDPLGFKMLMAALGLQLAGSYWLYRMT 304 Query: 184 N 184 Sbjct: 305 K 305 >gi|116052335|ref|YP_792646.1| hypothetical protein PA14_55880 [Pseudomonas aeruginosa UCBPP-PA14] gi|254239029|ref|ZP_04932352.1| hypothetical protein PACG_05206 [Pseudomonas aeruginosa C3719] gi|296391000|ref|ZP_06880475.1| hypothetical protein PaerPAb_22729 [Pseudomonas aeruginosa PAb1] gi|313106820|ref|ZP_07793032.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016] gi|115587556|gb|ABJ13571.1| putative pilus assembly protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126170960|gb|EAZ56471.1| hypothetical protein PACG_05206 [Pseudomonas aeruginosa C3719] gi|310879534|gb|EFQ38128.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016] Length = 294 Score = 85.9 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 44/184 (23%), Positives = 94/184 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R + + P LD +VRS+ AG + DA+ V + +P+R F Sbjct: 109 LGMLYQRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVENAEEPLRDIFTLARNHVL 168 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L E++ + ++E+ + +SV + GGN S+ L ++ +++ +R+ + ++ Sbjct: 169 LGIHLPEALQEVAELYEVEELRILALGVSVNHRYGGNTSDLLDSIVKLIHEREKLSRQLH 228 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + SA+++ +P + + ++PGY+ + D G LL + L+G + Sbjct: 229 AMTGETRISAYVLAGVPSALGGYILASNPGYLLNMWADGTGRFLLLASLGLQLLGCYALW 288 Query: 181 LMIN 184 M+ Sbjct: 289 RMLK 292 >gi|85707698|ref|ZP_01038764.1| hypothetical protein NAP1_00645 [Erythrobacter sp. NAP1] gi|85689232|gb|EAQ29235.1| hypothetical protein NAP1_00645 [Erythrobacter sp. NAP1] Length = 333 Score = 85.9 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 61/148 (41%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +K+ KRT + P+ALD++V AGL V A + + + + EF Sbjct: 171 LKNKADKRTKEIQKGLPDALDLLVICAEAGLTVDAAFNRVAKELGRAYPELGDEFALTAI 230 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + + L+ V T + + G L+ AL LS R+ + M+A Sbjct: 231 ELSFLNERKMAFNNLAYRVDLEAVKGVVTTMIQTERYGTPLASALRVLSAEFRNERMMRA 290 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A + A + +I + + ++ Sbjct: 291 EEKAARLPAIMTVPLILFILPVLFIVIL 318 >gi|87312288|ref|ZP_01094386.1| probable secretion system protein TadC [Blastopirellula marina DSM 3645] gi|87284992|gb|EAQ76928.1| probable secretion system protein TadC [Blastopirellula marina DSM 3645] Length = 309 Score = 85.9 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 63/148 (42%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + +L KKR + P+ALD++V V AGL + A+ + + + EF Sbjct: 143 LWYLGKKRKEQIFRGLPDALDLMVVCVEAGLGLDQAMRRVSEEMKKTYRVIAEEFGLCNF 202 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G S+ + + + ++ + ++ + G ++S+AL S +R R+ A Sbjct: 203 QLQVGRQRSDVLHELGNRTGVDDLRSLAAILIQADKFGSSISQALRVQSDSMRTRRRQIA 262 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A K ++ + + ++ Sbjct: 263 EEKAAKTAVKMIFPLVFFIFPGIFVVLV 290 >gi|154505644|ref|ZP_02042382.1| hypothetical protein RUMGNA_03183 [Ruminococcus gnavus ATCC 29149] gi|153794083|gb|EDN76503.1| hypothetical protein RUMGNA_03183 [Ruminococcus gnavus ATCC 29149] Length = 232 Score = 85.9 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 77/188 (40%), Gaps = 6/188 (3%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRVIETQ 59 K++ +F + F ++ + ++ G V +A+ + + E+ ++ Sbjct: 45 KQKKEEFREQFRESIQTLSAILKVGYSVENAIRETWKEICPIYKKKTRIIKEYETMVHQL 104 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 L ++ E + + + ++V F TV +LGG+ + + + + ++ ++ ++ Sbjct: 105 DLNMTAEEVMKQFADRVKEEDVENFVTVFGAAKRLGGDSIAIIRHAADAIGEKMEVEREI 164 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 Q + K I+ +PF + + P +M VL + G + + + L + Sbjct: 165 QVMLTSKKLEFKIMCVIPFVIILYMRSAFPEFMAVLYGNLAGTLFMTICLMVYLTAYQLG 224 Query: 180 RLMINFDV 187 + M +V Sbjct: 225 KKMTQIEV 232 >gi|184200571|ref|YP_001854778.1| hypothetical protein KRH_09250 [Kocuria rhizophila DC2201] gi|183580801|dbj|BAG29272.1| hypothetical membrane protein [Kocuria rhizophila DC2201] Length = 285 Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 81/183 (44%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +RTA + +P+ +D + ++RAG+ + +A+ + + +P+R F R Sbjct: 94 VRRRAHRRTAVLREVWPDVVDHLRSAIRAGMGLPEALMQLQYRGPEPLRPAFARFAADYR 153 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKV 119 L S++ + + + + V + G +L + L LS LR+ + ++++ Sbjct: 154 ASGQLHGSLTMLKQRLADPVADNIVEALRVTREVGGTDLGKLLGTLSEFLRENERTRSEL 213 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +A +A + + P+ + L+ T P + N P G ++L A + +M Sbjct: 214 EARQSWTVNAARLSVAAPWLILGLM-ATQPAAVQA-YNTPAGAVVLLGGLAVSVAAYQLM 271 Query: 180 RLM 182 + Sbjct: 272 LRL 274 >gi|126729093|ref|ZP_01744907.1| type II/IV secretion system protein, TadC subfamily [Sagittula stellata E-37] gi|126710083|gb|EBA09135.1| type II/IV secretion system protein, TadC subfamily [Sagittula stellata E-37] Length = 324 Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 68/148 (45%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + ++KR + FP+ALD+++ V AG + ++ + + S + EF + Sbjct: 161 ITKRMEKRKEEIQQGFPDALDMMLVCVEAGQSMEQSIIRVAKELRASYPALADEFEIISH 220 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S+ ++ M Q+VS F TV++ G ++S+AL + +RD++ M+A Sbjct: 221 EMKAGKDRSQVLNDMSERCGSQDVSSFVTVLNQAQTFGTSISDALRVYAGEMRDKRVMRA 280 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + A + K + + + ++ Sbjct: 281 EEAANKLPTKMTLTTMMLTVPPLLIILV 308 >gi|291521739|emb|CBK80032.1| Flp pilus assembly protein TadB [Coprococcus catus GD/7] Length = 240 Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 74/192 (38%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA------VIVGQSSDPVRSEFRRV 55 + K R +F +A ++ S AG + A+ S + EF R+ Sbjct: 49 RMREKSRKQMLWHEFKDAAAMLYSSTAAGGTLEKALRDTCCDMKTSDSSYQVLLPEFERI 108 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 SL + +++++F V++V + GG+LS + + + + R + Sbjct: 109 CMHLDQNRSLESVLEDFAVRSEDEDIAYFVRVLTVARKSGGSLSSIIRHTADTMNLRMEI 168 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 ++++ + + I+ +P + + S YMN+L G +++ A Sbjct: 169 NSEIETILAGKRGEWRIMLIVPPGILCYMNMCSSEYMNILYTGLTGRLVMTAALMVYAAA 228 Query: 176 IMVMRLMINFDV 187 + +++ V Sbjct: 229 LWTGHKILDIHV 240 >gi|239817190|ref|YP_002946100.1| type II secretion system protein [Variovorax paradoxus S110] gi|239803767|gb|ACS20834.1| type II secretion system protein [Variovorax paradoxus S110] Length = 409 Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 58/185 (31%), Gaps = 11/185 (5%) Query: 1 MKHLIKKRT----AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRR 54 + IKKR D + ++AG+P+ + ++ ++ V Sbjct: 52 LASKIKKRRMRSGKSIKPKDIAIFTRQLATMMKAGVPLLQSFDIVGRGNANPSVAKLLND 111 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 + G SLS + + + + + G L + L L+ + + Sbjct: 112 IRSDVETGTSLSSAFRKFPK-----YFDNLYCNLVEAGEAAGILEDLLDRLATYMEKTEA 166 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 +K+K+++ M + + + + V D L +A + + Sbjct: 167 IKSKIKSALMYPTSVVVVAFVVVAIIMIFVIPAFKQVFTSFGADLPAPTLFVMAMSEFFV 226 Query: 175 GIMVM 179 + Sbjct: 227 SYWWL 231 Score = 35.9 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 15/131 (11%), Positives = 43/131 (32%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ +A+ + G S + V ++ + G SL+ +++ + Sbjct: 279 WTRTLATMFAAGVPLVEALDSVGGASGNTVYGDATAKIQQEVSTGTSLTTAMTNV----- 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + G++ L + + + ME ++ + Sbjct: 334 -NLFPSMVIQMTAIGEESGSIDHMLGKAADFYESEVDDMVAGLSSLMEPIIIVFLGVIIG 392 Query: 138 FCVSTLVYFTS 148 V ++ Sbjct: 393 GIVVSMYLPIF 403 >gi|152986618|ref|YP_001350204.1| hypothetical protein PSPA7_4868 [Pseudomonas aeruginosa PA7] gi|150961776|gb|ABR83801.1| hypothetical protein PSPA7_4868 [Pseudomonas aeruginosa PA7] Length = 293 Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 44/179 (24%), Positives = 91/179 (50%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R + + P LD +VRS+ AG + DA+ V + DP+R F LG+ L Sbjct: 113 RRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVEDAEDPLRDIFGLARNHVLLGIHL 172 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ + ++E+ + +SV + GGN ++ L + R++ +R+ + ++ A++ E Sbjct: 173 PEALQEVAELYEVEELRILALGVSVNHRYGGNTTDLLDGIVRLIHEREKLSRQLHAMTGE 232 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + SA+++ +P + + ++PGY+ + D G LL + L+G + M+ Sbjct: 233 TRISAYVLAGVPSALGGYILASNPGYLLNMWADGSGRFLLLASLGLQLLGCYALWRMLK 291 >gi|291615154|ref|YP_003525311.1| type II secretion system F domain protein [Sideroxydans lithotrophicus ES-1] gi|291585266|gb|ADE12924.1| Type II secretion system F domain protein [Sideroxydans lithotrophicus ES-1] Length = 405 Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 22/172 (12%), Positives = 50/172 (29%), Gaps = 6/172 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLS 66 R D + +++G+P+ A ++ + V + G SL Sbjct: 59 RGKVTEKDITLFTRQLATMLKSGVPLLQAFDIVGKGHDNPAVSRLLFDIKTDVETGSSLE 118 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S + + + G L L L+ +K+K+++ Sbjct: 119 QSFRKFPL-----YFDDLYCNLLGAGEAAGILDSLLDRLATYKEKILAIKSKIKSALFYP 173 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + I + + V + D G L+ +A + + Sbjct: 174 ISIIVIAFVITAVIMIFVIPAFKDLFSNFGADLPGPTLVVMAISDFFVAWWW 225 Score = 42.8 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 17/160 (10%), Positives = 44/160 (27%), Gaps = 19/160 (11%) Query: 2 KHLIKKRTAKFLDDFPNA------------LDIIVRSVRAGLPVSDAVAVIVGQSSDPV- 48 +++R + + P + AG+P+ +A + G + + V Sbjct: 245 NKTMQRRMDQLMLKIPVFGPLVRKASIARWSRTLATMFAAGVPLVEAFDSVAGAAGNAVY 304 Query: 49 RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRI 108 + + G SL+ ++ + + G L L ++ Sbjct: 305 YDATKAIQREVTSGTSLTVAMQN------TDAFPSMVLQMVAIGEESGALDAMLGKVADF 358 Query: 109 LRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 + + + ME + + V + Sbjct: 359 FEAEVDDAVEALSSLMEPVIMVVLGTLIGGMVVAMYLPIF 398 >gi|291087379|ref|ZP_06346291.2| putative bacterial type II secretion system protein F domain protein [Clostridium sp. M62/1] gi|291075554|gb|EFE12918.1| putative bacterial type II secretion system protein F domain protein [Clostridium sp. M62/1] Length = 268 Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 78/179 (43%), Gaps = 6/179 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRVIETQHLGLSLSES 68 F A+ ++ S+ AG + ++ + Q + + EF + L +L E Sbjct: 90 QFKEAVLMLSSSLAAGYSMENSFSQAEIQLRELYGERAMMADEFSDMRRQLSLNRTLEEL 149 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 S ++E+ F+ ++ + GG + +++++ I+ + ++ +++ ++ + + Sbjct: 150 WSDFADRSGVEEIRSFALILRSARRNGGRMGAVISHIAEIIGGKLQVQEEIRTMTAQKQF 209 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 I+ LP + + TSPG+ + + G +++ V A ++ M+ ++ Sbjct: 210 EQKIMNLLPILIVLYIDVTSPGFFDSMYETTVGRIVMTVCLAVYAGAYVLAGRMLEIEI 268 >gi|114798130|ref|YP_761686.1| type II secretion system protein [Hyphomonas neptunium ATCC 15444] gi|114738304|gb|ABI76429.1| type II secretion system protein [Hyphomonas neptunium ATCC 15444] Length = 339 Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 64/156 (41%), Gaps = 5/156 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + +L +KR + FP+ALD+++ V AG+ + + + +S + EF + Sbjct: 162 ISNLAQKRQKSLMRAFPDALDMLLICVEAGMSIEMGFNKVSQEIGSASPELAEEFGITVA 221 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + V + + G L +AL +++ R+ + +A Sbjct: 222 ELSYLPDRRLAYENLALRTGHEGVKAVCMALGQAERYGTPLGDALRMMAKENREMRMSEA 281 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153 + +A S+ AK + +I + +V P Y+ Sbjct: 282 EKKAASLPAKLTVPMILFFLPVLFLVV--LGPAYIQ 315 >gi|303241709|ref|ZP_07328206.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] gi|302590710|gb|EFL60461.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] Length = 306 Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 74/157 (47%), Gaps = 2/157 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I +R K L+ P+ LD++ SV AGL A+A ++ + P+ EF V++ Sbjct: 149 LNKQIAQRQKKILNSLPDVLDLLTVSVEAGLGFDGALAKVIDKMPGPIAIEFENVLQEMK 208 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G +++ M + L +++ F I QLG ++ L S +R+++ +AK + Sbjct: 209 VGKQKRDALKDMAERVGLHDLTTFVGSIIQADQLGVSIGNVLRIQSEQMREKRRQRAKEK 268 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 A+ K ++ + + +++ P + V+ Sbjct: 269 AMKAPVKMLIPMVLFIFPTIFSVL--IGPVIIKVIYT 303 >gi|194290795|ref|YP_002006702.1| type IV pilus assembly transmembrane protein [Cupriavidus taiwanensis LMG 19424] gi|193224630|emb|CAQ70641.1| type IV pilus ASSEMBLY TRANSMEMBRANE PROTEIN [Cupriavidus taiwanensis LMG 19424] Length = 423 Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 24/179 (13%), Positives = 57/179 (31%), Gaps = 7/179 (3%) Query: 1 MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIET 58 +K R K D + ++AG+P+ ++ +I + + Sbjct: 70 LKKRKAARGRKITEKDIAYFTRQLSTMLKAGIPLLQSIDIIARGHVNPNFTQLLSDIRFD 129 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G S++ + R + + + GG L L LS + +K + Sbjct: 130 IEAGSSMAAAFRRHPK-----YFDTLYCNLIDAGEQGGILDSLLERLSLYMEKTIALKGQ 184 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 +++ + A + ++ + V G + + LL +A + + Sbjct: 185 IKSAMIYPIAVLTVAFAVTVILMLFVIPAFKGVFSSFGANLPAPTLLVIAISDFFVQYW 243 >gi|307943150|ref|ZP_07658495.1| type II secretion system protein [Roseibium sp. TrichSKD4] gi|307773946|gb|EFO33162.1| type II secretion system protein [Roseibium sp. TrichSKD4] Length = 326 Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 65/161 (40%), Gaps = 4/161 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +++ I+KR +P+ALD+++ V +G+ + A+ + + S + E Sbjct: 165 LQNTIEKRQKAIGRAWPDALDLMLICVESGMSIEVAMQKVADEIGVQSADLAEELTLTTA 224 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + + + + G +++AL +S RD++ +A Sbjct: 225 ELSYLQDRRIAFENLGNRTGMDNIKNVVMALIQAERYGTPVAKALRAMSDDTRDQRMQEA 284 Query: 118 KVQALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + +A S+ K I+ LP + ++ M+V+ Sbjct: 285 EKKAASLPPKLTVPMIVFFLPVLFAVIMTPAILQIMDVMGG 325 >gi|308176985|ref|YP_003916391.1| type II secretion system protein F [Arthrobacter arilaitensis Re117] gi|307744448|emb|CBT75420.1| putative type II secretion system protein F [Arthrobacter arilaitensis Re117] Length = 283 Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 72/188 (38%), Gaps = 3/188 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++H KR A + +P +D + ++RAGL + +A++ + +R FR Sbjct: 92 LRHQAAKRQAALQEQWPEVVDHLRSAIRAGLSLPEALSQLAMVGPQILRPLFRDFALDYR 151 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKV 119 + + ++ ++ + T + + + G +L L LS LRD + ++ Sbjct: 152 ATANFAVALDQLGERLADPVADKILTTLRITREVGGTDLGHTLTTLSAFLRDDVRTRGEL 211 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A ++A + + P+ + ++ G ++L + I +M Sbjct: 212 AARQSWIVSAARLAVAAPWILLLVLGT--QEAAKDAYMTVGGVIVLSLGMLVSFICYRIM 269 Query: 180 RLMINFDV 187 + V Sbjct: 270 LRLGTLPV 277 >gi|113869209|ref|YP_727698.1| Type IV pilus assembly protein PilC [Ralstonia eutropha H16] gi|113527985|emb|CAJ94330.1| Type IV pilus assembly protein PilC [Ralstonia eutropha H16] Length = 423 Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 24/179 (13%), Positives = 57/179 (31%), Gaps = 7/179 (3%) Query: 1 MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIET 58 +K R K D + ++AG+P+ ++ +I + + Sbjct: 70 LKKRKAARGRKITEKDIAYFTRQLSTMLKAGIPLLQSIDIIARGHVNPNFTQLLSDIRFD 129 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G S++ + R + + + GG L L LS + +K + Sbjct: 130 IEAGSSMAAAFRRHPK-----YFDTLYCNLIDAGEQGGILDSLLERLSLYMEKTIALKGQ 184 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 +++ + A + ++ + V G + + LL +A + + Sbjct: 185 IKSAMIYPIAVLTVAFAVTVILMLFVIPAFKGVFSSFGANLPAPTLLVIAISDFFVQYW 243 >gi|296131925|ref|YP_003639172.1| Type II secretion system F domain protein [Thermincola sp. JR] gi|296030503|gb|ADG81271.1| Type II secretion system F domain protein [Thermincola potens JR] Length = 319 Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 59/145 (40%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K R + P+ LD + +++AG+P+ A+ +V P+ E +R Sbjct: 156 INMLAKSRQEQIALGLPDFLDGMSVTLQAGVPLDAAMNQVVNHMEGPLAEELQRFNRELE 215 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ E+ R+V +E+ + S+LG ++ ++ +R + K K + Sbjct: 216 LGVPREEAYHRLVNRNECEELETLVQSLIQGSKLGVPIARTFKVMADDMRITRFNKVKEK 275 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145 A K + + V + Sbjct: 276 AAKASPKVTLVTSFIITPGVMLAIL 300 >gi|319795782|ref|YP_004157422.1| type II secretion system f domain [Variovorax paradoxus EPS] gi|315598245|gb|ADU39311.1| Type II secretion system F domain [Variovorax paradoxus EPS] Length = 330 Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 42/185 (22%), Positives = 84/185 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++K + + P +D +VR + G A + + P+R R Sbjct: 145 LWLRLQKFRRQLVSQLPAYIDSMVRLITIGNSTQAAFQLAIANCEPPLRGYLDRAASLVR 204 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ L ++ + + ++E+ ++++ + + GG L ++ +RDR+ + ++ Sbjct: 205 AGVDLDRALHQTAVSVRIEEMYLLASILGLGVRYGGRADLLLERVANFMRDREQAEHELV 264 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SAWI+G LP V T + ++P Y L ND G ML+ A L+G + Sbjct: 265 AMSSETRLSAWILGLLPVGVCTFLMISNPSYFMGLWNDGTGRMLIFSAVGLQLLGAAFLY 324 Query: 181 LMINF 185 + Sbjct: 325 RLARL 329 >gi|163738365|ref|ZP_02145780.1| type II secretion system protein [Phaeobacter gallaeciensis BS107] gi|163742218|ref|ZP_02149606.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter gallaeciensis 2.10] gi|161384548|gb|EDQ08929.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter gallaeciensis 2.10] gi|161388286|gb|EDQ12640.1| type II secretion system protein [Phaeobacter gallaeciensis BS107] Length = 326 Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 72/160 (45%), Gaps = 3/160 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + I++R + FP+ALD+++ V AG + A+ + + S + EF V + Sbjct: 164 ITRRIEERKQEITSGFPDALDMMLVCVEAGQSLDQAIVRVAKELHASYPALADEFDIVAQ 223 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + + M +Q+VS F TV+ + G +++EAL + +RD++ M+A Sbjct: 224 EMKAGKDKDKVMRDMGTRCGVQDVSSFVTVMIQSATFGTSIAEALRVYAGEMRDKRVMRA 283 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + A + K + + + ++ S + L N Sbjct: 284 EEAANKLPTKMTLATMTLTVPPLLIILVGPSAQGIANLGN 323 >gi|84494454|ref|ZP_00993573.1| hypothetical protein JNB_06649 [Janibacter sp. HTCC2649] gi|84383947|gb|EAP99827.1| hypothetical protein JNB_06649 [Janibacter sp. HTCC2649] Length = 289 Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 71/171 (41%), Gaps = 3/171 (1%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +P+A+D I +VRAG+ + +AVA + + + +R F+ + + + + R+ Sbjct: 113 WPDAVDNITSAVRAGMSLPEAVAQLGLRGPEELRPAFQAFAQDYRITGRFHDCLDRLKER 172 Query: 76 MPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + + G +L L LS LR+ +++++ +A + Sbjct: 173 LSDPVADRLIESLRIAREVGGSDLGRLLRTLSVFLREDSRTRSELETRQSWTVNAARLAV 232 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + P+ V ++ T P + + G ++L A + VM + Sbjct: 233 AAPWIVLAMLS-TRPESVQA-YSTGTGALILFFGAVMTAVAYWVMVRIGRL 281 >gi|187930139|ref|YP_001900626.1| type II secretion system protein [Ralstonia pickettii 12J] gi|309783039|ref|ZP_07677758.1| type IV pilus biogenesis protein PilC [Ralstonia sp. 5_7_47FAA] gi|187727029|gb|ACD28194.1| type II secretion system protein [Ralstonia pickettii 12J] gi|308918147|gb|EFP63825.1| type IV pilus biogenesis protein PilC [Ralstonia sp. 5_7_47FAA] Length = 424 Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 24/179 (13%), Positives = 59/179 (32%), Gaps = 7/179 (3%) Query: 2 KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ 59 K R K D + ++AG+P+ ++ +I ++ + Sbjct: 72 KRRRAARGKKITPKDIAYFTRQLSTMLKAGVPLLQSIDIIAKGHANPNFTQLLTEIRVDI 131 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G S++++ R + + + GG L L LS + +KA++ Sbjct: 132 ESGSSMAQAFRRHPK-----YFDTLYCNLIDAGEQGGILDALLERLSLYMEKSLALKAQI 186 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 ++ + + + + + V + G + D L +A + + + Sbjct: 187 KSALIYPISVLTVAFLVTVVLMIFVVPSFKGVFSGFGADLPAPTLFVIAISDFFVKWWI 245 >gi|220923700|ref|YP_002499002.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] gi|219948307|gb|ACL58699.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] Length = 321 Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +K+ I KR +P+ALD+++ V +G+ V A + + S + E Sbjct: 163 VKNRISKRQTAIRRAWPDALDLLLICVESGMGVESAFRKVADEIGPQSPELAEELSLTTA 222 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + L V T + + G + + L L++ RD + +A Sbjct: 223 ELSYLPDRRKAYENLAERTGLDGVKGVVTSLIQAEKYGTPVGQTLRVLAQENRDMRMTEA 282 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 283 EKKAAALPPKLTVPMILFFLPVLFAVII 310 >gi|260574611|ref|ZP_05842614.1| type II secretion system protein [Rhodobacter sp. SW2] gi|259023028|gb|EEW26321.1| type II secretion system protein [Rhodobacter sp. SW2] Length = 326 Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 71/148 (47%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + +KKR A+ + FP+ALD+++ V AG + ++ + +S + EF V + Sbjct: 163 VNSRVKKRQAEIVSGFPDALDMMLVCVEAGQSMDQSIIRVARESRAGYPALADEFDMVAQ 222 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + + M + + +V+ F T + + G +++EAL S +RD++ M+A Sbjct: 223 EIKAGKERTTVMRDMSERVGIADVASFVTTLVQSATFGTSIAEALRVYSAEMRDKRVMRA 282 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + + + ++ Sbjct: 283 EEKANTLPTKLTLGTMLFTLPPLLIILI 310 >gi|121593228|ref|YP_985124.1| type II secretion system protein [Acidovorax sp. JS42] gi|120605308|gb|ABM41048.1| type II secretion system protein [Acidovorax sp. JS42] Length = 405 Score = 84.8 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 23/182 (12%), Positives = 56/182 (30%), Gaps = 10/182 (5%) Query: 3 HLIKKRT---AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIE 57 + K+R K D + ++AG+P+ A ++ ++ V + Sbjct: 51 KIKKRRMSAGKKIKPKDIALFTRQMATMMKAGVPLLQAFDIVGRGNTNPSVTKLLNDIRG 110 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G SL+ + + + + G L L L+ + + +K+ Sbjct: 111 DVETGTSLNAAFRKYPM-----YFDSLYCNLVEAGEAAGILEALLDRLALYMEKTEAIKS 165 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 K+++ M + + + + V D L +A + + Sbjct: 166 KIRSALMYPISVIIVAFVVVTIIMIFVIPAFKEVFTSFGADLPAPTLFVMAISEFFVAYW 225 Query: 178 VM 179 + Sbjct: 226 WL 227 >gi|149915637|ref|ZP_01904163.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. AzwK-3b] gi|149810529|gb|EDM70372.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. AzwK-3b] Length = 328 Score = 84.8 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 71/158 (44%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + ++R + FP++LD+++ V AG + ++ + + S + E++ V Sbjct: 165 VTKRQQQRQEDITNGFPDSLDMMLTCVEAGQSLDQSIVRVSNEIAASYPALAEEYQIVAN 224 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G ++ M +Q++S F TV+ G ++++AL + +RD++ M+A Sbjct: 225 QIKAGRDKPSVLNEMAERCGVQDISSFVTVLVQSQTFGTSIADALRVYAGEMRDKRVMRA 284 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A + K + + + ++ P + +L Sbjct: 285 EEKANKLPTKMTLATMMLTVPPLLIIL--VGPSVIGIL 320 >gi|255327036|ref|ZP_05368112.1| type II secretion system protein [Rothia mucilaginosa ATCC 25296] gi|255296253|gb|EET75594.1| type II secretion system protein [Rothia mucilaginosa ATCC 25296] Length = 284 Score = 84.8 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 73/183 (39%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H + A+ +P+A+D + ++RAGL + +A+ + + + +R F Sbjct: 93 VNHRARAADARIWQLWPDAVDHLRSAIRAGLSLPEALIQLSYRGPEELRDAFAHFSRDYR 152 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVI-SVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 S++R+ Y+ + + G +L + L LS LR+ ++++ Sbjct: 153 ASGEFVPSLNRLKEYLSDPVADTIIEALKIAREVGGSDLGKLLGTLSDFLRENARTRSEL 212 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A +A + P+ V L+ ++ N G ML+ AA L +M Sbjct: 213 LARQSWTVNAARLSCVAPWFVLCLMAT--QPAARMVYNSFAGAMLMIAGAAISLAAYRLM 270 Query: 180 RLM 182 + Sbjct: 271 LRI 273 >gi|237798378|ref|ZP_04586839.1| type II secretion system protein, F domain [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021230|gb|EGI01287.1| type II secretion system protein, F domain [Pseudomonas syringae pv. oryzae str. 1_6] Length = 294 Score = 84.8 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 92/173 (53%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ++ P LD VRS+++G ++DAV + ++ P++ R+ LG+SL ++ Sbjct: 120 MIEQLPQLLDHSVRSLKSGRTLADAVLFGITAANQPLKEGMSRIERNVQLGVSLPDAARD 179 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 E F+ + V + GGN SE + NL R++RDR+ +++A++ E + +A Sbjct: 180 FAELYESDEFHLFALGLRVNHRYGGNASELMENLIRLIRDREQASRQLRAMTGETRMTAL 239 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 ++G LP ++ +P Y+ + ND G +LL +A A L+G +++ M+ Sbjct: 240 VLGLLPVGMAGYFMAVNPAYLMHMWNDGSGRILLSMAFALQLLGCLMLWRMLR 292 >gi|254293219|ref|YP_003059242.1| type II secretion system protein [Hirschia baltica ATCC 49814] gi|254041750|gb|ACT58545.1| type II secretion system protein [Hirschia baltica ATCC 49814] Length = 333 Score = 84.8 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 66/157 (42%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + + KR A + FP++LD+++ V +G+ + A A + + +S + E Sbjct: 159 LTNRADKRKASIMKAFPDSLDMMLICVESGMSIESAFAKVGEEVGTASVELAEELGLTTA 218 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + + +T + + G + AL +++ R+ + ++A Sbjct: 219 ELSYLQERRQAYVNLADRTNHPGIKSVATALVQAEKYGTPMGTALRTMAKENREIRVLEA 278 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + +A ++ AK + +I + ++ P Y+ + Sbjct: 279 EKKAAALPAKLTVPMIVFFLPVLFIVIGT--PAYIQI 313 >gi|291459839|ref|ZP_06599229.1| putative bacterial type II secretion system protein F domain protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291417629|gb|EFE91348.1| putative bacterial type II secretion system protein F domain protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 285 Score = 84.8 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 25/191 (13%), Positives = 75/191 (39%), Gaps = 7/191 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55 K L KKR + F L+ + ++ +G+ ++D++ + + E + Sbjct: 95 KMLQKKRITELSIQFRGFLEALAVALSSGMNMNDSLQSVYKDLVLEYTRDSWIVKETEEM 154 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 I + + + I + +++ F+TV +V + GGN+ + + + I+ ++ + Sbjct: 155 ISGMRNNIPIEDMIRSLGERSDNRDIRNFATVFNVSYRAGGNIRDIVRRTADIIGEKIEI 214 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 ++ K + +P + ++ + + P G + A ++ Sbjct: 215 SGEIATAISSNKLQFNAMMVIPVFLILMLRAMGGNFAKS-FSTPLGVIATTFALGIFVLA 273 Query: 176 IMVMRLMINFD 186 ++ + +++ Sbjct: 274 FLLGQKIMDIK 284 >gi|311697135|gb|ADQ00007.1| type II secretion system protein [marine bacterium HP15] Length = 305 Score = 84.8 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 76/178 (42%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +++ + ++ P+ LD ++RS+ G V +V S R+ G Sbjct: 122 ERQRRQIFEELPSILDGMIRSISVGRSVEQSVVAAFSDGSPVFDPLIFRLKNAVGQGRDY 181 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + I + ++ + S+ G +L L +++ +R R++++ + A + E Sbjct: 182 TRVIDEFAALYQIPDLVQVAIAFRTSSRFGSSLRPVLMEVAKAIRSRQDLRREFMAATAE 241 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + +A +P ++ + + G+ L++ G LL ++ LIGI+ + +I Sbjct: 242 TRFTAVAFAIIPPGLAAYMVILNDGFSAQLLDTNAGQTLLWMSGILQLIGIVFIWRLI 299 >gi|116620536|ref|YP_822692.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116223698|gb|ABJ82407.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 315 Score = 84.4 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 64/158 (40%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ + KR P+ALD++V S+ AGL + A+ + + S + E + V Sbjct: 149 LEKRVAKRQETLRLSLPDALDLLVVSIEAGLGLDQAIQHVARELYASHPQLSDEMQLVTL 208 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G SE++ E ++ + G ++ E+L S LR R+ +A Sbjct: 209 EMRAGKRRSEALRNFAERTGEAEFRKLVAILIQNDRFGTSMGESLRTHSDFLRTRRRQEA 268 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A + K I + + LV PG + + Sbjct: 269 EERAGKVGVKLVFPIFFFILPSM--LVVAAGPGILQIF 304 >gi|222109982|ref|YP_002552246.1| type II secretion system protein [Acidovorax ebreus TPSY] gi|221729426|gb|ACM32246.1| type II secretion system protein [Acidovorax ebreus TPSY] Length = 405 Score = 84.4 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 23/182 (12%), Positives = 56/182 (30%), Gaps = 10/182 (5%) Query: 3 HLIKKRT---AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIE 57 + K+R K D + ++AG+P+ A ++ ++ V + Sbjct: 51 KIKKRRMSAGKKIKPKDIALFTRQMATMMKAGVPLLQAFDIVGRGNTNPSVTKLLNDIRG 110 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G SL+ + + + + G L L L+ + + +K+ Sbjct: 111 DVETGTSLNAAFRKYPM-----YFDSLYCNLVEAGEAAGILEALLDRLALYMEKTEAIKS 165 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 K+++ M + + + + V D L +A + + Sbjct: 166 KIRSALMYPISVIIVAFVVVTIIMIFVIPAFKEVFTSFGADLPAPTLFVMAISEFFVAYW 225 Query: 178 VM 179 + Sbjct: 226 WL 227 Score = 34.7 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 15/131 (11%), Positives = 41/131 (31%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ +A+ + G S + V + ++ + G SL+ ++ Sbjct: 275 WTRTLSTMFAAGVPLVEALDSVAGASGNSVYAIATEKIQQEVSTGTSLTAAMGNA----- 329 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G++ L + + + ME ++ + Sbjct: 330 -NVFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDEMVAGLSSLMEPIIIVFLGTLIG 388 Query: 138 FCVSTLVYFTS 148 V ++ Sbjct: 389 GIVVSMYLPIF 399 >gi|241664289|ref|YP_002982649.1| type II secretion system protein [Ralstonia pickettii 12D] gi|240866316|gb|ACS63977.1| type II secretion system protein [Ralstonia pickettii 12D] Length = 420 Score = 84.4 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 24/179 (13%), Positives = 59/179 (32%), Gaps = 7/179 (3%) Query: 2 KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ 59 K R K D + ++AG+P+ ++ +I ++ + Sbjct: 68 KRRRAARGKKITPKDIAYFTRQLSTMLKAGVPLLQSIDIIAKGHANPNFTQLLTEIRVDI 127 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G S++++ R + + + GG L L LS + +KA++ Sbjct: 128 ESGSSMAQAFRRHPK-----YFDTLYCNLIDAGEQGGILDALLERLSLYMEKSLALKAQI 182 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 ++ + + + + + V + G + D L +A + + + Sbjct: 183 KSALIYPISVLTVAFLVTVVLMIFVVPSFKGVFSGFGADLPAPTLFVIAISDFFVKWWI 241 >gi|256827716|ref|YP_003151675.1| Flp pilus assembly protein TadB [Cryptobacterium curtum DSM 15641] gi|256583859|gb|ACU94993.1| Flp pilus assembly protein TadB [Cryptobacterium curtum DSM 15641] Length = 321 Score = 84.4 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 91/182 (50%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 H I++R + P+A+ I + AGL + + +S P++ F RV + Sbjct: 135 SHAIERREDALREALPDAVWSIGICLHAGLSQQQTFSRLEEESHGPLKEVFSRVSQALAA 194 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L E+++ + ++E++F +T + +Q Q GG++ + L +L N++ + Sbjct: 195 GSPLDEALALLKGDGSIRELTFVATALEIQHQAGGSMKQVLETAGEMLAHETNLRRSLAV 254 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + +A+ SA ++ ++ ++ ++ S G++ + G ++L VA + + GIM +R Sbjct: 255 NTAQARLSARVVVAVTVLLAGVLSVLSDGFLETFFSSTEGIIMLAVALSMQVGGIMAVRK 314 Query: 182 MI 183 ++ Sbjct: 315 IL 316 >gi|92113784|ref|YP_573712.1| type II secretion system protein [Chromohalobacter salexigens DSM 3043] gi|91796874|gb|ABE59013.1| type II secretion system protein [Chromohalobacter salexigens DSM 3043] Length = 291 Score = 84.4 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 84/170 (49%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P L+ +R + G A + +S+ P+R+ RV + LGL L E + R + Sbjct: 120 QLPGYLEQFLRELAVGASPERAFQRQIARSAPPLRNMLERVWVRRELGLELHEGLVRESQ 179 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + L E++ +T + V + GG+L + L + +LR ++ + +++AL+ E + +A ++ Sbjct: 180 LLKLSELALLATALEVNQRHGGSLRDILGSFVTLLRQQERGRRELKALTGETRFTAVVLA 239 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +P + + T+P +++ + + G L +A L G VM M+ Sbjct: 240 VIPVLIGGYILLTNPEFLSTMWHSADGRAALWLALGLELSGCFVMWRMLK 289 >gi|239817415|ref|YP_002946325.1| type II secretion system protein [Variovorax paradoxus S110] gi|239803992|gb|ACS21059.1| type II secretion system protein [Variovorax paradoxus S110] Length = 241 Score = 84.4 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 84/182 (46%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++K + + P +D +VR + G A + + + P+R R G+ Sbjct: 59 RLQKVRRQLISQLPAYIDAMVRLITIGNSTQAAFQLAIATTQAPLRGHMERSAALVRAGV 118 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L ++ + + ++E+ ++++ + + GG L ++ +RDR+ + ++ A+S Sbjct: 119 DLDRALHQTANNVRVEEMFLLASILGLGVRYGGRSDLLLERVANFMRDREQAEHELVAMS 178 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAWI+G LP V T + +P Y + ND G ML+ +A L+G + + Sbjct: 179 AETRLSAWILGLLPLGVGTFLVVVNPDYFLSMWNDDTGRMLIFSSAGLQLLGAFFLYRLA 238 Query: 184 NF 185 Sbjct: 239 RL 240 >gi|282865305|ref|ZP_06274357.1| type II secretion system protein [Streptomyces sp. ACTE] gi|282559778|gb|EFB65328.1| type II secretion system protein [Streptomyces sp. ACTE] Length = 295 Score = 84.0 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 66/161 (40%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I +R P+ LD++ V AGL A+ + + S P E R + Sbjct: 134 IRSAISRRKDDIDRTLPDFLDVLAVVVSAGLGFRQALERVAEKYSGPWADELRITLRQMD 193 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+S E+ ++ + ++VS F + + +LG + + L ++ +R A+ + Sbjct: 194 MGVSRREAFDQLRKRNESEQVSMFVSALQQGEELGAPIVDTLIQIANDMRRTDAQNARRK 253 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 A KA+ + + L+ +V I D G Sbjct: 254 AAKAVPKATLIVTSFMLPGTMILIAVGFYYAADVNIGDVFG 294 >gi|238750901|ref|ZP_04612398.1| Type II secretion system protein F domain protein [Yersinia rohdei ATCC 43380] gi|238710815|gb|EEQ03036.1| Type II secretion system protein F domain protein [Yersinia rohdei ATCC 43380] Length = 272 Score = 84.0 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 80/184 (43%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K KK + F DFP L +I + +G ++ + + + P+ SE R + + Sbjct: 86 IKAARKKHYSLFKQDFPEVLLMINMASSSGASINQVLERCGQEITGPLGSELRLICRRLN 145 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S + E F T+I + Q GG L + LS+I+ K + K Sbjct: 146 LGESPESVFHDAYQRFNFPEFYFLITIILLNLQQGGQLKDLTNRLSQIISKNKTAEQKKA 205 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ E + S II +P S L+YF + + N P G ++ +IGI ++R Sbjct: 206 TMTAETRMSVNIISVMPIAFSLLLYFIDSTSIESMWNHPTGKLIFYYIIISEIIGISLIR 265 Query: 181 LMIN 184 M+ Sbjct: 266 KMLR 269 >gi|238897545|ref|YP_002923224.1| putative tight adherance operon protein B [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465302|gb|ACQ67076.1| putative tight adherance operon protein B [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 300 Score = 84.0 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 74/180 (41%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 K++ F + FP L I +G+ V++ + + + E + +G + Sbjct: 118 KKQKKIYFTETFPELLLIFNMGSVSGISVNEILKKAGQEIKGGLGKECDLIFRRLSIGEN 177 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ + E F ++ + GG L E + L++++ + M+ + A++ Sbjct: 178 INTVFYDAYQRFSYPEFYMFINILMLNINQGGQLRELMHRLNQVVTNYNKMEKRKMAMTG 237 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E + S W++ +P YF +P + + G +++ A +GI +MR M Sbjct: 238 EIRMSIWVVTLIPVIFFAFSYFMNPLSFQKIFSYEIGKIIIYYCLASNTLGIFIMRYMFR 297 >gi|51891529|ref|YP_074220.1| putative sercretion system protein [Symbiobacterium thermophilum IAM 14863] gi|51855218|dbj|BAD39376.1| putative sercretion system protein [Symbiobacterium thermophilum IAM 14863] Length = 299 Score = 84.0 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 46/173 (26%), Positives = 84/173 (48%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + P L ++ +RAG + AV +V Q+ P+R EF RV L + +++ + Sbjct: 125 EQLPETLMLMASVIRAGGTLYQAVQTVVQQAPQPMRGEFERVARAMQLQVPAGDALGLIR 184 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + L E + V + GG+L L ++SR L + + ++A E KASA ++ Sbjct: 185 DRVGLGEFTSVVVACKVAGEAGGDLDRVLESISRELVEDRQFLRAMEAACAEGKASARLV 244 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 ++P V LV + +P Y + DP G +LL + M +G +++R + + Sbjct: 245 TAVPLVVVALVSYQNPAYFGEALTDPLGRVLLLGSLCAMALGWLLIRQITDVR 297 >gi|229821271|ref|YP_002882797.1| type II secretion system protein [Beutenbergia cavernae DSM 12333] gi|229567184|gb|ACQ81035.1| type II secretion system protein [Beutenbergia cavernae DSM 12333] Length = 285 Score = 84.0 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 64/176 (36%), Gaps = 3/176 (1%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 + +P+ +D + +VRAG+ + +A+ + + VR+E S+ Sbjct: 104 ELRQVWPDVVDDLTSAVRAGMTLPEALISLSERGPQEVRAELHAFAVDYRASGRFVASLD 163 Query: 71 RMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + + + + G +L L LS LRD + +++A Sbjct: 164 ALKERLADPVADRIVETLRIATDVGGSDLGRMLRTLSEFLRDDLRTRGELEARQSWTVNG 223 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A + + P+ V L+ T P + P G ++L ++ + M + Sbjct: 224 ARLAVAAPWVVLALMS-TRPE-TAAAFDTPAGVLMLLAGGLTCVVAYLAMMRIGRL 277 >gi|260768629|ref|ZP_05877563.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972] gi|260616659|gb|EEX41844.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972] Length = 292 Score = 84.0 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 91/176 (51%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 + + P+ ++ + R ++ GL ++ AV ++ P++ +RVI + +G+ L ++ Sbjct: 115 KLQLVQQLPSFVEQVNRRIKVGLSIAQAVEQSASATNAPLKDVLQRVIHRKAVGVELQDA 174 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + ++ S+ ++ GG+++++L +L ++LR + + ++++++ E + Sbjct: 175 FEKESVVTGVVAFHLLGSIFSINTRYGGSITDSLESLVKLLRQQDLSRRELKSITGETRI 234 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +AW+IGS P VS + +P + + G L + + L+GI+++ M Sbjct: 235 TAWVIGSAPLLVSAYMLTQNPELLINMWYSEGGRQALILGISLQLLGIILIWRMFR 290 >gi|126733578|ref|ZP_01749325.1| Putative Flp pilus assembly protein TadC [Roseobacter sp. CCS2] gi|126716444|gb|EBA13308.1| Putative Flp pilus assembly protein TadC [Roseobacter sp. CCS2] Length = 321 Score = 84.0 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 70/160 (43%), Gaps = 5/160 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + + R + FP++LD+++ V AG + ++ + + + EF V + Sbjct: 162 VTRRQQMRQEAIENAFPDSLDMMLVCVEAGQSLDQSIIRVARELKSGFPELAEEFEIVSQ 221 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + + M + +++ F TV+ SQ G ++++AL S +RD++ M+A Sbjct: 222 EAKAGKDKNTVLKDMSDRCGVPDIASFVTVLVQSSQFGTSIADALRVYSAEMRDKRVMRA 281 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + +A + K + + + ++ P ++ + Sbjct: 282 EEKANKLPTKMTLATMMLTVPPLMAML--IGPSIYAIVTS 319 >gi|302335343|ref|YP_003800550.1| Type II secretion system F domain protein [Olsenella uli DSM 7084] gi|301319183|gb|ADK67670.1| Type II secretion system F domain protein [Olsenella uli DSM 7084] Length = 312 Score = 84.0 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 67/181 (37%), Gaps = 1/181 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L +R + P + ++ +G +S AV + V F R H G Sbjct: 130 LESRRRRAIEREMPAVFRTLAMAMGSGETLSQAVDYLAAHGGGEVAKAFTRTSLRMHCGY 189 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ES+ + R + V T + + + G L +R++ + + + + Sbjct: 190 PARESLDLLARELDAPGVGLLVTALLISQRTGSPLRSLFRRSARLVERQGEFERMLGVKT 249 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + S ++ LP + L+ S + L + P G + AA I+++R ++ Sbjct: 250 AQVRLSVRVVSGLPVIMIALLSLISSDFQRGL-STPVGAACILAAALMDGAAILIIRRLM 308 Query: 184 N 184 Sbjct: 309 R 309 >gi|297618076|ref|YP_003703235.1| type II secretion system F domain protein [Syntrophothermus lipocalidus DSM 12680] gi|297145913|gb|ADI02670.1| Type II secretion system F domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 295 Score = 84.0 bits (206), Expect = 9e-15, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 65/145 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R+ L P+ LD++ SV AGL A+ +V +S P+ EF + Sbjct: 139 LNLCRRQRSEGILKSLPDVLDLLSVSVEAGLGFDAALQKVVEKSQGPLADEFDTALNEIR 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G E++ M R + + +VS F + LG ++S L + +R ++ +A+ + Sbjct: 199 MGKPRREALRDMARRVEVDDVSTFVGAVVQADTLGVSISNVLTVQAEQVRQKRRQRAEEK 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145 A K ++ + + ++ Sbjct: 259 AQKAPVKILIPMLFFIFPTIFIVLL 283 >gi|167725257|ref|ZP_02408493.1| type II secretion system protein [Burkholderia pseudomallei DM98] Length = 275 Score = 84.0 bits (206), Expect = 9e-15, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 4/165 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + I R ++DFP+ALD++ V AGL + A+ + + S V E ++ Sbjct: 110 LARRIAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLL 169 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + ++V FST++ + G ++ +L LS LR ++ M+A Sbjct: 170 EMRSGFTKETALRNLALRTGAEDVDAFSTMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 229 Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + +A + I P ++ L+ L+ G Sbjct: 230 EERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRTLLPTMAG 274 >gi|328884729|emb|CCA57968.1| putative integral membrane protein [Streptomyces venezuelae ATCC 10712] Length = 295 Score = 84.0 bits (206), Expect = 9e-15, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 56/137 (40%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + P+ LD++ V AGL A+ + + P E R + +G+S + Sbjct: 141 RKDQIERTLPDFLDVLAVVVSAGLGFRQALERVAEKYEGPWADELRITLRQMDMGVSRRQ 200 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + + R ++V+ F T + +LG + E L ++ +R A+ +A K Sbjct: 201 AFDELRRRNDSEQVAQFVTALQQGEELGAPIVETLIQIANDMRRTDAQNARRKAAKAVPK 260 Query: 128 ASAWIIGSLPFCVSTLV 144 A+ I + L+ Sbjct: 261 ATMVITTLMVPATMILL 277 >gi|187478774|ref|YP_786798.1| pilus assembly protein [Bordetella avium 197N] gi|115423360|emb|CAJ49894.1| putative pilus assembly protein [Bordetella avium 197N] Length = 282 Score = 84.0 bits (206), Expect = 9e-15, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 84/170 (49%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 P L + ++RAG + A+ + + P+ E ++ Q LG+S +++ R+ Sbjct: 109 AQLPAGLLSLASALRAGASLPAALRQLADLAQPPLAQEIGLMLREQRLGVSFDDALHRLE 168 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + L V + V GGNL++ L +++ LR + + +++AL+ + + AW++ Sbjct: 169 CRVDLPSVRLMTAAFRVAGSAGGNLAQTLEGIAQALRGQLLAEGRLKALTAQGRMQAWVL 228 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +LP ++ ++Y P M L G +L+ + A ++G ++R ++ Sbjct: 229 SALPLVLAVVLYLLRPEQMARLWQTEAGWILIALVMALQVLGWFLIRRIL 278 >gi|113866736|ref|YP_725225.1| flp pilus assembly protein TadC [Ralstonia eutropha H16] gi|113525512|emb|CAJ91857.1| flp pilus assembly protein TadC [Ralstonia eutropha H16] Length = 324 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 73/166 (43%), Gaps = 4/166 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + +R ++FP+ +D++ V AGL + A+ + + + E + ++ Sbjct: 157 LARKVAQRQRTVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLL 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S +++S + +++V F++++ + G +L E+L LS +LR ++ M+A Sbjct: 217 ELRSGFSKEKALSNLSLRTGVEDVDKFASMLIQADRFGTSLGESLRVLSDMLRTKRRMRA 276 Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162 + QA + I P + L+ VL+ G Sbjct: 277 EEQAAKIALKLLFPLIFTIFPSLLLVLLGPAFIQIYRVLLPTMAGQ 322 >gi|319795465|ref|YP_004157105.1| type II secretion system f domain [Variovorax paradoxus EPS] gi|315597928|gb|ADU38994.1| Type II secretion system F domain [Variovorax paradoxus EPS] Length = 410 Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 58/185 (31%), Gaps = 11/185 (5%) Query: 1 MKHLIKKRT----AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRR 54 + IKKR D + ++AG+P+ + ++ ++ V Sbjct: 53 LASKIKKRRMRSGKAIKPKDIAIFTRQLATMMKAGVPLLQSFDIVGRGNANASVAKLLND 112 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 + G SLS + + + + + G L + L L+ + + Sbjct: 113 IRSDVETGTSLSAAFRKFPK-----YFDNLYCNLVEAGEAAGILEDLLDRLATYMEKTEA 167 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 +K+K+++ M + + + + V D L +A + + Sbjct: 168 IKSKIKSALMYPTSVVVVAFVVVAIIMIFVIPVFKEVFTSFGADLPAPTLFVMAMSEFFV 227 Query: 175 GIMVM 179 + Sbjct: 228 SYWWL 232 Score = 34.7 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 15/131 (11%), Positives = 43/131 (32%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ +A+ + G S + V ++ + G SL+ +++ + Sbjct: 280 WTRTLATMFAAGVPLVEALDSVGGASGNSVYGDATAKIQQEVSTGTSLTAAMTNV----- 334 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + G++ L + + + ME ++ + Sbjct: 335 -NLFPSMVIQMTAIGEESGSIDHMLGKAADFYESEVDDMVAGLSSLMEPIIIVFLGVIIG 393 Query: 138 FCVSTLVYFTS 148 V ++ Sbjct: 394 GIVVSMYLPIF 404 >gi|308068033|ref|YP_003869638.1| Flp pilus assembly protein TadB [Paenibacillus polymyxa E681] gi|305857312|gb|ADM69100.1| Flp pilus assembly protein TadB [Paenibacillus polymyxa E681] Length = 291 Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 80/193 (41%), Gaps = 8/193 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFRR 54 K L+++R + F AL + S+ AG V + V + EF Sbjct: 100 KFLLQRRRSALSIQFKQALYSLSSSLSAGRSVENGFREAVEDLRLLSPDGDHDLIFEFNI 159 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 + +G + ++ + R +++++ F+ V + + GG+L E + S ++ ++ Sbjct: 160 ITACLEIGQPVEAALQELARRAQMEDITNFADVFAACKRTGGDLVEVVRRASSVIGEKLE 219 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 ++ ++ + + + + ++ + PF + T+ YM L G +L + Sbjct: 220 IQQEIGVMIAQKRFESRVMFAAPFLFVLFMTMTAGDYMMPLY-SGTGMILSTFCLLVLGG 278 Query: 175 GIMVMRLMINFDV 187 ++ + ++ +V Sbjct: 279 CLVWINHIMKIEV 291 >gi|300694108|ref|YP_003750081.1| type II secretion system protein [Ralstonia solanacearum PSI07] gi|299076145|emb|CBM10581.1| Type II secretion system protein [Ralstonia solanacearum PSI07] Length = 308 Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 83/182 (45%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + ++ + + P LD +VR + G V A + P+R+ + Q G Sbjct: 125 NRTRRMNERLMQQLPGFLDGMVRLMSIGSAVPAAFQAASANTEPPLRTCLTSATQLQRAG 184 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L ++ + + + E+ S+V+ + + GG + + +RDR+ + ++ AL Sbjct: 185 KDLDAAVLAVGQQYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQKELLAL 244 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAWI+G LP V ++ + Y+ + DP G ML+ A ++G +++ + Sbjct: 245 SAETRLSAWILGLLPVVVGGIIIMFNAAYVMSMWRDPVGKMLMTAAFGLEVMGSLMLARL 304 Query: 183 IN 184 Sbjct: 305 AK 306 >gi|89053483|ref|YP_508934.1| type II secretion system protein [Jannaschia sp. CCS1] gi|88863032|gb|ABD53909.1| type II secretion system protein [Jannaschia sp. CCS1] Length = 326 Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 71/160 (44%), Gaps = 5/160 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + + R + FP+ALD+++ V AG + A+ + + S P+ EF V Sbjct: 166 ITKRAQTREDQINSGFPDALDLMLVCVEAGQSLDQAIIKVANEIKTSYPPLAEEFEIVSY 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G ++ + M + +Q+V+ F T + S G +++EAL S +RD++ +A Sbjct: 226 EMKAGKDKTKVLRDMGERVGIQDVNSFITTLIQSSTFGTSVAEALKVYSDEMRDKRISRA 285 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + +A + K + + + + ++ P + + Sbjct: 286 EEKANKLPTKLTLFTMLFCVPPLLVIL--IGPSIYGIATD 323 >gi|328545274|ref|YP_004305383.1| hypothetical protein SL003B_3658 [polymorphum gilvum SL003B-26A1] gi|326415016|gb|ADZ72079.1| Hypothetical transmembrane protein [Polymorphum gilvum SL003B-26A1] Length = 325 Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 63/160 (39%), Gaps = 5/160 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +++ I KR +P+ALD+++ V +G+ + A + + S P+ E Sbjct: 166 IQNRITKRQQSIRRAWPDALDLMLICVESGMSIEAAFRKVADEIGIQSIPLAEELTLTNA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + + V + + + G + AL ++ R+++ +A Sbjct: 226 ELSFLQERRQAYLNFAKRTGVDGVKNVTMALIQAERYGTPIGHALRVMADDNREQRMQEA 285 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + +A S+ K + +I + ++ P M ++ Sbjct: 286 EKKAASLPPKLTVPMIVFFLPVLFFVI--MGPAVMQIIAT 323 >gi|319639058|ref|ZP_07993815.1| PilG protein [Neisseria mucosa C102] gi|317399636|gb|EFV80300.1| PilG protein [Neisseria mucosa C102] Length = 413 Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 64/187 (34%), Gaps = 7/187 (3%) Query: 1 MKHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIET 58 + + R + +D + ++AGLP+ A ++ S+ + +V Sbjct: 59 ISKVKTARKRRITQEDITVFTRQLATMMKAGLPLMQAFEIVARGHSNPSMTEMLMQVRSD 118 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G +L +S S+ + F + + GG L L L+ + +K K Sbjct: 119 VEQGSALGKSFSKYPK-----YFDRFYCNLVSAGESGGVLESLLDKLAVYKEKTQAIKKK 173 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 V+ A + +L F + V + + G L + + + + Sbjct: 174 VKTALTYPIAIIVVAIALIFIMMMFVLPAFKEVYANMGAELPGLTQLVMNLSDLFVDYGW 233 Query: 179 MRLMINF 185 + +++ Sbjct: 234 IMIILLI 240 >gi|73542334|ref|YP_296854.1| type II secretion system protein [Ralstonia eutropha JMP134] gi|72119747|gb|AAZ62010.1| type II secretion system protein [Ralstonia eutropha JMP134] Length = 323 Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 74/166 (44%), Gaps = 4/166 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + H + +R ++FP+ +D++ V AGL + A+ + + + E + ++ Sbjct: 157 LSHKVAERQRAVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLL 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S +++S + +++V F++++ + G +L ++L LS +LR ++ M+A Sbjct: 217 ELRSGFSKEKALSNLSLRTGVEDVDKFASMLIQADRFGTSLGDSLRVLSDMLRTKRRMRA 276 Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162 + QA + I P + L+ VL+ G Sbjct: 277 EEQAAKIALKLLFPLIFTIFPSLLLVLLGPAFIQIYRVLLPTMAGQ 322 >gi|332970974|gb|EGK09948.1| hypothetical protein HMPREF9374_2751 [Desmospora sp. 8437] Length = 306 Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 66/158 (41%), Gaps = 2/158 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K +KR + + P+ +D++ +++AG+ + A+ V ++ P+ E R+ + Sbjct: 143 VKFKAQKRQEEIQYELPDFMDMMSITLQAGMALDTALDYYVSTNNGPLSEEIARMNQEIS 202 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ E+ + LG +SE A + +R+ + KAK Q Sbjct: 203 FGVQRETAYRALIDRTDSTELETLVQSMIQAHNLGTPISETFALQAMEMRNMRAEKAKEQ 262 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158 A E K SA + + LV+ + D Sbjct: 263 AGKSEPKISAVAGLVITPSIMLLVFGAF--ILKFFFTD 298 >gi|260431089|ref|ZP_05785060.1| type II/IV secretion system protein, TadC subfamily [Silicibacter lacuscaerulensis ITI-1157] gi|260414917|gb|EEX08176.1| type II/IV secretion system protein, TadC subfamily [Silicibacter lacuscaerulensis ITI-1157] Length = 327 Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 73/158 (46%), Gaps = 4/158 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + +++R FP+ LD+++ V AG + A+ + + + EF V Sbjct: 165 ITRRVEERKEAITAGFPDTLDLMLVCVEAGQSLDQAIVRVASEMKSSYPDIAQEFEIVAY 224 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G ++ + +Q+VS F TV+ + G ++++AL + +RD++ M+A Sbjct: 225 EMKAGKDKNQVLRDFGTRCGVQDVSSFVTVMIQSATFGTSIADALRVYAGEMRDKRVMRA 284 Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154 + A + K + A ++ ++P + LV ++ G M Sbjct: 285 EEAANKLPTKMTLATMMLTVPPLLIILVGPSAKGIMEF 322 >gi|134299964|ref|YP_001113460.1| type II secretion system protein [Desulfotomaculum reducens MI-1] gi|134052664|gb|ABO50635.1| type II secretion system protein [Desulfotomaculum reducens MI-1] Length = 310 Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 69/155 (44%), Gaps = 2/155 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I+ R + P+ALD++ SV AGL A+ + ++ + EF +++ H Sbjct: 153 LNSRIRNRKTQVEKSLPDALDLLTVSVEAGLGFDGALMKVAEKTKGIMADEFILMLQECH 212 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G E++ M + + ++S F I + LG ++ L S+ +R ++ K + Sbjct: 213 MGKPRREALRDMATRLDVDDLSSFCGSIILADTLGISIGNVLRTQSQQMRQKRRQKTEEL 272 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A+ K ++ + + ++ P + ++ Sbjct: 273 AMKAPIKMLFPMVFFIFPAIFVIL--LGPAALQIM 305 >gi|253995967|ref|YP_003048031.1| type II secretion system protein [Methylotenera mobilis JLW8] gi|253982646|gb|ACT47504.1| type II secretion system protein [Methylotenera mobilis JLW8] Length = 407 Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 20/167 (11%), Positives = 51/167 (30%), Gaps = 6/167 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71 D + +++G+P+ + ++ S+ V + G SLS + + Sbjct: 65 DKDITLFTRQLATMMKSGVPLLQSFDIVGKGHSNPAVAKLLGDIKSDVETGSSLSAAFRK 124 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + G L L L+ + +K+K+++ + Sbjct: 125 YPL-----YFDALFCNLISAGEQAGILDTLLDRLATYKEKIQAIKSKIKSALFYPVSIIV 179 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + + V + D G L+ +A + + Sbjct: 180 VAFIITAVIMIFVVPAFKELFSSFGADLPGPTLVVMAISEFFVNWWW 226 Score = 45.9 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 20/142 (14%), Positives = 43/142 (30%), Gaps = 11/142 (7%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLS 66 R A + AG+P+ +A+ + G S + V +R+ G SL+ Sbjct: 268 RKATIAR----FARTMATMFSAGVPLVEALDSVAGASGNRVYYDATKRIQSEISTGTSLT 323 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + ++ + G L L ++ + + + ME Sbjct: 324 VAMQNA------EVFPNMVLQMTAIGEESGALDSMLGKVADFYEGEVDDAVEALSSLMEP 377 Query: 127 KASAWIIGSLPFCVSTLVYFTS 148 + + V L Sbjct: 378 IIMVVLGVLIGGLVVALYLPIF 399 >gi|118589708|ref|ZP_01547113.1| hypothetical protein SIAM614_04690 [Stappia aggregata IAM 12614] gi|118437794|gb|EAV44430.1| hypothetical protein SIAM614_04690 [Stappia aggregata IAM 12614] Length = 325 Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 58/159 (36%), Gaps = 4/159 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +K+ I KR +P+ALD+++ V +G+ + + + + S + E Sbjct: 166 LKNKIDKRKLTIQRAWPDALDLMLICVESGMSIEEGFRRVAEEVGVQSVELAEELSLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + + V + + G + AL ++ R+++ A Sbjct: 226 ELSYLSDRRIAYENLAKRTGVDGVKNVMMALIQAERYGTPVGTALRTMADDTREQRMQMA 285 Query: 118 KVQALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A S+ K I+ LP ++ M+ Sbjct: 286 EQKAASLPPKLTVPMIMFFLPVLFFIIMGPAVIQVMDTF 324 >gi|298370054|ref|ZP_06981370.1| type IV pilin biogenesis protein PilC [Neisseria sp. oral taxon 014 str. F0314] gi|298281514|gb|EFI23003.1| type IV pilin biogenesis protein PilC [Neisseria sp. oral taxon 014 str. F0314] Length = 413 Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 67/187 (35%), Gaps = 9/187 (4%) Query: 1 MKHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIET 58 + + R + +D + ++AGLP+ A ++ S+ + +V Sbjct: 59 VSKVKSTRKKRITQEDITVFTRQLATMMKAGLPLMQAFEIVARGHSNPSMTQMLMQVRAD 118 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G +L +S S+ + F + + GG L L L+ + +K K Sbjct: 119 VEQGSALGKSFSKYPK-----YFDRFYCNLVSAGETGGVLEGLLDKLAVYKEKTQAIKKK 173 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI--GI 176 V+ A + +L F + V + + + G + ++ + + G Sbjct: 174 VKTALTYPIAIMVVAVALIFVMMMFVLPAFGEVYSSMGAELPGLTQIVMSMSKFFVKYGW 233 Query: 177 MVMRLMI 183 +++ +I Sbjct: 234 VMIVAII 240 >gi|225174956|ref|ZP_03728953.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] gi|225169596|gb|EEG78393.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] Length = 306 Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 67/145 (46%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K +R + P+ LD+++ SV AGL A+ + + + E + ++ Sbjct: 148 VKRKATERQKEIQRSLPDMLDLLLVSVDAGLAFDMALKKVADKMPGELSREIGKALDEIR 207 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G + E++ M + ++S F + + QLG N+++ L + +R R+ M+A+ + Sbjct: 208 MGKTRIEALRSMANRTGVPDISTFISAVIQAEQLGSNIAKTLDVQANTMRQRRRMRAEEE 267 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145 A+ K ++ + + ++ Sbjct: 268 AMRAPIKMLFPLVFFIFPALFVVLL 292 >gi|188586923|ref|YP_001918468.1| type II secretion system protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351610|gb|ACB85880.1| type II secretion system protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 317 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 1/159 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + R + P LD++ SV AGL ++ + + + P+ E +RV + Sbjct: 158 LSSKVNTRKNEIQRALPEFLDLLTVSVEAGLGFESSLKKVAEEGTGPLAVEIKRVTQEIS 217 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S E++ + + LQ++S F I QLG +S L S+ R ++ +A+ Q Sbjct: 218 MGKSRKEALIDLKERIDLQDLSTFINAIIQAEQLGVGISRVLKVESKEFRRKRRQRAEEQ 277 Query: 121 ALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158 A+ K I+ P L+ + M+ LI Sbjct: 278 AMKAPVKLLIPLILFIFPTIFIILLGPAALRIMDNLIGT 316 >gi|296129085|ref|YP_003636335.1| Type II secretion system F domain protein [Cellulomonas flavigena DSM 20109] gi|296020900|gb|ADG74136.1| Type II secretion system F domain protein [Cellulomonas flavigena DSM 20109] Length = 286 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 76/186 (40%), Gaps = 3/186 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ ++R A + +P+ +D + VRAGL + +AVA + + +R+ FR E Sbjct: 95 VQGRARRRLASTRELWPDVVDHLASGVRAGLSLPEAVAQLGDRGPAELRAPFRAFAEDYR 154 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKV 119 ++S+ + + + + G +L L LS LRD + ++ Sbjct: 155 ATGRFTDSLDALKDRLADPVADRIIEALRLTRDVGGTDLGRLLRTLSTFLRDDLRTRGEL 214 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +A +A + + P+ V ++ T P + + P G +L AA + +M Sbjct: 215 EARQSWTVYAARMAVAAPWVVLAML-ATRPEAIRA-YDSPAGAAVLLAGAASSVAAYRLM 272 Query: 180 RLMINF 185 + Sbjct: 273 LRVARL 278 >gi|221633000|ref|YP_002522225.1| type II secretion system protein [Thermomicrobium roseum DSM 5159] gi|221157259|gb|ACM06386.1| type II secretion system protein [Thermomicrobium roseum DSM 5159] Length = 303 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 67/156 (42%), Gaps = 1/156 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I +R P+A+D++V SV AGL A+ +V + + + EF R + Sbjct: 147 LSRRIAQRKRAIQRALPDAIDLLVISVEAGLGFDQALLRVVEKWDNELTREFARTLSEMR 206 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ +++ + R + + +++ F + QLG ++S+ L + +R R+ +A+ Sbjct: 207 MGIPRRQALRDLARRVNVDDLNVFIASLVQADQLGVSISQVLRAQANQMRLRRRQRAQEL 266 Query: 121 ALSMEAKA-SAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A K + P ++ P + Sbjct: 267 AHKAPIKMIFPMVFLIFPALYVVILGPAIPRIVEAF 302 >gi|187479015|ref|YP_787039.1| type IV pilus assembly protein [Bordetella avium 197N] gi|115423601|emb|CAJ50139.1| putative type IV pilus assembly protein [Bordetella avium 197N] Length = 305 Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 42/184 (22%), Positives = 80/184 (43%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R + + P+ +D +VR + G V+ A + DP+ +R Sbjct: 120 IWRQAGERRQRMIKQLPDFIDGVVRLITIGNSVNAAFQGAMTSIDDPLLEVLQRAEALMR 179 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L ++ ++ R LQE+ S+VIS+ + GG L ++ +RD + + ++ Sbjct: 180 SGKDLDSALLKVSRQYGLQELYLVSSVISLALRFGGRSDLVLERMAAFMRDLELAREELI 239 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + S WI+ LP + + + + DP G +L A ++G ++ Sbjct: 240 ALSAEVRMSVWILSLLPIGLGLFIIVFNNDLFMGMWRDPLGFKMLIGGAMLQVVGTYLLF 299 Query: 181 LMIN 184 M Sbjct: 300 RMAR 303 >gi|197106463|ref|YP_002131840.1| Flp pilus assembly protein TadC [Phenylobacterium zucineum HLK1] gi|196479883|gb|ACG79411.1| Flp pilus assembly protein TadC [Phenylobacterium zucineum HLK1] Length = 320 Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 69/161 (42%), Gaps = 5/161 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +K+ I+KR+ K P+ALD+ V AGL + A+A + + ++ + E Sbjct: 160 LKNAIQKRSLKIQRALPDALDLFVICAEAGLSLDAALARVSREIGPAAPELADELGLTAV 219 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 E++ + R + +V + + G L++AL L+ RD + MKA Sbjct: 220 ELGFLPDRREALLNLTRRVAAPQVRGLVNTLVQTEKYGTPLAQALRVLAAEFRDTRMMKA 279 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158 + +A + A + +I + + ++ P + VL Sbjct: 280 EEKAARLPATLTVPMIAFILPPLFVVL--IGPAIVQVLTTS 318 >gi|297192377|ref|ZP_06909775.1| integral membrane protein [Streptomyces pristinaespiralis ATCC 25486] gi|197723022|gb|EDY66930.1| integral membrane protein [Streptomyces pristinaespiralis ATCC 25486] Length = 296 Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 60/146 (41%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I +R P+ LD++ V AGL A+ + + + P E R + Sbjct: 135 LRAAIARRRDDIERTLPDFLDVLAVVVSAGLGFRQALERVAEKYAGPWSDELRITLRQMD 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ E+ ++ R ++VS F + + +LG + + L ++ +R A+ + Sbjct: 195 MGMGRREAFEQLRRRNESEQVSMFVSALQQGEELGAPIVDTLIQIANDMRRTDAQNARRK 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146 A KA+ + + L+ Sbjct: 255 AAKAVPKATLIVTSFMLPGTMILIVA 280 >gi|295395665|ref|ZP_06805857.1| integral membrane protein [Brevibacterium mcbrellneri ATCC 49030] gi|294971481|gb|EFG47364.1| integral membrane protein [Brevibacterium mcbrellneri ATCC 49030] Length = 297 Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 65/143 (45%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR D P+ LD++ +V AGL A+A + ++ P+ E V+ ++G ++ Sbjct: 144 RKRQEAIEDSLPDFLDVLAVTVSAGLSFRSAIAKVTERTQGPLADELNTVLHQLNMGETV 203 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ S + + + + F T + +LG L++ LA ++ +R +A+ +A Sbjct: 204 YDAFSALRKRTTSESLDSFITTLLQAEELGAPLADTLATIALDMRQTTAQRARQKAAKAS 263 Query: 126 AKASAWIIGSLPFCVSTLVYFTS 148 K + + + L+ + Sbjct: 264 PKIAGVVTIIMVPGTMALIMVSV 286 >gi|16127170|ref|NP_421734.1| hypothetical protein CC_2940 [Caulobacter crescentus CB15] gi|221235971|ref|YP_002518408.1| tyrosine phenol-lyase [Caulobacter crescentus NA1000] gi|13424566|gb|AAK24902.1| hypothetical protein CC_2940 [Caulobacter crescentus CB15] gi|220965144|gb|ACL96500.1| tyrosine phenol-lyase [Caulobacter crescentus NA1000] Length = 362 Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 65/157 (41%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + ++ +KR + FP+ALD+++ V +G+ + A+ + + SS + E + Sbjct: 203 ISNVAQKRRESIVAAFPDALDLLLICVESGMSIEAAIQKVGAEVGSSSMELAEELSLLTA 262 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + R + +T + + G L AL +++ R+ + A Sbjct: 263 ELSYLPDRRLAYENLARRTNHPGIKSVATAMIQAERYGTPLGTALRVMAKENRELRLSAA 322 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + +A ++ A+ + +I + ++ P M V Sbjct: 323 EKKAAALPAQLTVPMILFFLPVLFIMI--LGPAIMKV 357 >gi|320161469|ref|YP_004174693.1| putative bacterial type II secretion system protein [Anaerolinea thermophila UNI-1] gi|319995322|dbj|BAJ64093.1| putative bacterial type II secretion system protein [Anaerolinea thermophila UNI-1] Length = 319 Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 71/163 (43%), Gaps = 2/163 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I +R + P+ALD++ V AGL A+A + + + F RVI+ Sbjct: 158 LTSKISRRQKEIRKSMPDALDLLTICVEAGLGFDAAMAKVAEKWESELSLAFARVIQEIQ 217 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + +++ M + + E++ F + QLG ++++ L S +R R+ A+ + Sbjct: 218 LGKTRRDALRDMAERIGIPEMTSFVAAVIQSEQLGVSMAKVLRIQSDQMRVRRRQAAEEE 277 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 A K + + + ++ +P + ++ + G Sbjct: 278 AHKAPVKMLIPMALLIFPSL--MIVLMTPAALRLMNSALAGMF 318 >gi|207739455|ref|YP_002257848.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609] gi|206592831|emb|CAQ59737.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609] Length = 319 Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 41/181 (22%), Positives = 82/181 (45%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++ + + P LD +VR + G V A + P+R+ + Q G Sbjct: 137 RTRRMKERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLALTTQLQRAGK 196 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L ++ + + + E+ S+V+ + + GG + + +RDR+ + ++ ALS Sbjct: 197 DLDAAVLAVGQQYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLALS 256 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAWI+G LP V ++ + Y+ + DP G ML+ A ++G +++ + Sbjct: 257 AETRLSAWILGLLPVVVGGIIIMFNATYVMSMWRDPAGKMLMMAAFGLEVMGSLMLARLA 316 Query: 184 N 184 Sbjct: 317 K 317 >gi|110679391|ref|YP_682398.1| TadC family type II/IV secretion system protein [Roseobacter denitrificans OCh 114] gi|109455507|gb|ABG31712.1| type II/IV secretion system protein, TadC subfamily, putative [Roseobacter denitrificans OCh 114] Length = 355 Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 71/165 (43%), Gaps = 3/165 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ + R + FP++LD+++ V AG + + + + S + EF V Sbjct: 191 VRRRVDARKDEITRGFPDSLDMMLVCVEAGQSLDQCIVRVSKELHASYPALAQEFDVVAY 250 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ +Q+VS F TV++ Q G +++EAL + +RD++ M+A Sbjct: 251 EMKAGKDKTTVLNDFGERCGVQDVSSFVTVLNQSQQFGTSIAEALRVYAEEMRDKRVMRA 310 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162 + A + K + + + ++ S + L N G Sbjct: 311 EEAANKLPTKMTLATMMLTVPPLLIILVGPSVHGITQLGNLGAGQ 355 >gi|260220289|emb|CBA27679.1| Type IV pilus assembly protein tapC [Curvibacter putative symbiont of Hydra magnipapillata] Length = 405 Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 24/182 (13%), Positives = 59/182 (32%), Gaps = 10/182 (5%) Query: 3 HLIKKRTAKFL----DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIE 57 + K+R D + ++AG+P+ A ++ + +P V + Sbjct: 51 KIKKRRMRSGKSIKPKDLAIFTRQLATMMKAGVPLLQAFDIVGRGNPNPSVTKLLSDIRS 110 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G SLS + + + + G L + L L+ + + +K+ Sbjct: 111 DVETGTSLSAAFRKYPL-----YFDNLYCNLVEAGESAGILDQLLDRLAVYMEKTEAIKS 165 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 K+++ M + + + + V + + L +A + + I Sbjct: 166 KIKSALMYPISVLVVAFVVVSVIMIFVIPSFKQVFTSFGGELPAPTLFVIALSEVFIEYW 225 Query: 178 VM 179 + Sbjct: 226 WL 227 Score = 33.9 bits (76), Expect = 9.4, Method: Composition-based stats. Identities = 15/131 (11%), Positives = 41/131 (31%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ +A+ + G S + V +++ + G SL+ +++ Sbjct: 275 WTRTLSTMFAAGVPLVEALDSVGGASGNIVYQYATQKIQQEVSTGTSLTAAMTNA----- 329 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G++ L + + + ME + + Sbjct: 330 -NLFPSMVLQMCAIGEESGSIDHMLGKAADFFEAEVDDMVAGISSLMEPIIIVVLGTIIG 388 Query: 138 FCVSTLVYFTS 148 V ++ Sbjct: 389 GIVVSMYLPIF 399 >gi|254780721|ref|YP_003065134.1| pilus component protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040398|gb|ACT57194.1| pilus component protein [Candidatus Liberibacter asiaticus str. psy62] Length = 329 Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 64/162 (39%), Gaps = 4/162 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + +L++KR + +P+ALD+++ V +G+ + A+ + + E I Sbjct: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + V + + + G ++ ++L L R + M+A Sbjct: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287 Query: 118 KVQALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158 + +A S+ K II LP + ++ ++ + + Sbjct: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329 >gi|317472142|ref|ZP_07931474.1| hypothetical protein HMPREF1011_01824 [Anaerostipes sp. 3_2_56FAA] gi|316900546|gb|EFV22528.1| hypothetical protein HMPREF1011_01824 [Anaerostipes sp. 3_2_56FAA] Length = 259 Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 75/193 (38%), Gaps = 7/193 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-------VRSEFRR 54 + K R + +F L + S+ AG + +AV + E Sbjct: 67 REERKMRIRQSRLEFKEMLLSVYNSLSAGYSLENAVRAARDDMRAVNGDKKSVLEQELSL 126 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 V + + + +M + + E S F+ V+ + + GGNL + + + + Sbjct: 127 VCAGLEVNQPIEVLMDKMALRLGVDEASQFAQVLWIIKRNGGNLIQIIKKSVEHMNQKIQ 186 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 +K ++ + + I+ +PF + V +PGY VL + P G +L V ++ Sbjct: 187 VKEEILTMVSAKRMEQKIMSVMPFFILLYVRLMNPGYFQVLYDSPGGVILSTVCLIVLVA 246 Query: 175 GIMVMRLMINFDV 187 M + ++ +V Sbjct: 247 AGMWAKKIVEIEV 259 >gi|292491527|ref|YP_003526966.1| type II secretion system protein [Nitrosococcus halophilus Nc4] gi|291580122|gb|ADE14579.1| type II secretion system protein [Nitrosococcus halophilus Nc4] Length = 320 Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 69/158 (43%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ LIKKR + + FP+ LD+++ AGL ++ A+ + + S + E V Sbjct: 159 LERLIKKRQRQIYNGFPDVLDLLITCTEAGLGLNAALKRVAEECAVSHPVLSGELTLVNM 218 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G++ E++ ++E+ F +S + G ++++ L S RD++ +A Sbjct: 219 EIRAGVNRVEALKNFSARAGIEEIHSFVAFLSQSLRFGTSIADTLRIYSDEFRDKRMQRA 278 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + A M K +I + + P + VL Sbjct: 279 EEMAAKMGTKMIFPLIFCILPS--FFLVAIGPAVLGVL 314 >gi|89100216|ref|ZP_01173083.1| hypothetical protein B14911_20190 [Bacillus sp. NRRL B-14911] gi|89085066|gb|EAR64200.1| hypothetical protein B14911_20190 [Bacillus sp. NRRL B-14911] Length = 312 Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 62/148 (41%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ KKR + D P+ LD + S++AG + A+ ++ S P++ EF ++ Sbjct: 148 VRSKAKKRQQQLRSDLPDFLDTVSVSLQAGSNMDSALKEVIKYFSGPIKEEFSIFLQEID 207 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ ++ ++ +E F + ++LG ++ L + + +R + K + Sbjct: 208 LGVPREKAYGGLLERNDNEEFQSFIKSLIQATRLGVPMASTLKSQAEDIRKISLEQVKEK 267 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTS 148 A K + + + L+ Sbjct: 268 AAKASPKVTMITSFIIAPLIMLLIIGLV 295 >gi|253996761|ref|YP_003048825.1| type II secretion system protein [Methylotenera mobilis JLW8] gi|253983440|gb|ACT48298.1| type II secretion system protein [Methylotenera mobilis JLW8] Length = 312 Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 68/166 (40%), Gaps = 4/166 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + H I R + + FP+ALD+I+ V +GL + A+A + + + E + Sbjct: 147 LSHRIDSRKREIFESFPDALDLIIVCVESGLGLDAALARVGEEMHVRSPTLGEELHLINL 206 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S ++ + ++EV ++ + G N+S++L + LR ++ + A Sbjct: 207 ELRAGSSRERALRNLALRTGVEEVDTLVAMLVQSDRFGTNISDSLRVHADSLRTKRRLLA 266 Query: 118 KVQALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162 + A + K I P + L+ N+L+ G Sbjct: 267 EEAAAKIAVKLLFPLIFFIFPSMLLVLLGPAFINIHNILLPTLAGQ 312 >gi|149200852|ref|ZP_01877827.1| type II/IV secretion system protein, TadC subfamily [Roseovarius sp. TM1035] gi|149145185|gb|EDM33211.1| type II/IV secretion system protein, TadC subfamily [Roseovarius sp. TM1035] Length = 326 Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 75/159 (47%), Gaps = 4/159 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + +KR + D FP++LD+++ + AG + ++ + + + EF V Sbjct: 164 VTKRQQKRQEEIQDGFPDSLDMMLVCIEAGQSMDQSIIRVASEMRASYPALADEFEIVAL 223 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + M +Q++S F TV+ G ++ EAL + +RD++ M+A Sbjct: 224 QIKAGRDKPSVLGEMAERCGVQDISSFVTVLVQSQTFGTSIGEALRVYAGEMRDKRVMRA 283 Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A + K + A ++ ++P + LV + G M++L Sbjct: 284 EEKANKLPTKMTLATMMLTVPPLLIILVGPSVLGIMDLL 322 >gi|167748318|ref|ZP_02420445.1| hypothetical protein ANACAC_03062 [Anaerostipes caccae DSM 14662] gi|167652310|gb|EDR96439.1| hypothetical protein ANACAC_03062 [Anaerostipes caccae DSM 14662] Length = 259 Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 75/193 (38%), Gaps = 7/193 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-------VRSEFRR 54 + K R + +F L + S+ AG + +AV + E Sbjct: 67 REERKMRIRQSRLEFKEMLLSVYNSLSAGYSLENAVRAARDDMRAVNGDKKSVLEQELSL 126 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 V + + + +M + + E S F+ V+ + + GGNL + + + + Sbjct: 127 VCAGLEVNQPIEVLMDKMALRLGVDEASQFAQVLWIIKRNGGNLIQIIKKSVEHMNQKIQ 186 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 +K ++ + + I+ +PF + V +PGY VL + P G +L V ++ Sbjct: 187 VKEEILTMVSAKRMEQKIMSVMPFFILLYVRLMNPGYFQVLYDSPGGVILSTVCLIVLVA 246 Query: 175 GIMVMRLMINFDV 187 M + ++ +V Sbjct: 247 AGMWAKKIVEIEV 259 >gi|99082191|ref|YP_614345.1| type II secretion system protein [Ruegeria sp. TM1040] gi|99038471|gb|ABF65083.1| hypothetical protein TM1040_2351 [Ruegeria sp. TM1040] Length = 323 Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 67/149 (44%), Gaps = 3/149 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + I++R FP+ALD+++ V AG + ++ + + S + EF V Sbjct: 164 ITRRIEERKQAITRAFPDALDMMLVCVEAGQSLDQSIVRVGKELQASYPELAEEFEIVAH 223 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + + M +Q+V+ F TV+ + G ++++AL + +RD++ M+A Sbjct: 224 EMKAGKEKDKVLRDMATRCGVQDVASFVTVMIQSAAFGTSIADALRVYAGEMRDKRVMRA 283 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF 146 + A + K + +G + ++ Sbjct: 284 EEAANKLPTKMTLATMGLTVPPLLAILIA 312 >gi|94309584|ref|YP_582794.1| type II secretion system protein [Cupriavidus metallidurans CH34] gi|93353436|gb|ABF07525.1| Bacterial type II secretion system protein, probably involved in Flp pilus synthesis [Cupriavidus metallidurans CH34] Length = 323 Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 72/165 (43%), Gaps = 4/165 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + R ++FP+ +D++ V AGL + A+ + + + E + ++ Sbjct: 157 LSRKVTARQRTVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLL 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S +++S + +++V F++++ + G +L E+L LS +LR ++ M+A Sbjct: 217 ELRSGFSKEKALSNLSLRTGVEDVDKFASMLIQADRFGTSLGESLRVLSDMLRTKRRMRA 276 Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + QA + I P + L+ VL+ G Sbjct: 277 EEQAAKIALKLLFPLIFTIFPTLLLVLLGPAFIQIYRVLLPTMTG 321 >gi|83747914|ref|ZP_00944946.1| TRANSMEMBRANE PILUS ASSEMBLY PROTEIN: TadB2 [Ralstonia solanacearum UW551] gi|83725447|gb|EAP72593.1| TRANSMEMBRANE PILUS ASSEMBLY PROTEIN: TadB2 [Ralstonia solanacearum UW551] Length = 308 Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 41/181 (22%), Positives = 82/181 (45%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++ + + P LD +VR + G V A + P+R+ + Q G Sbjct: 126 RTRRMKERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLALTTQLQRAGK 185 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L ++ + + + E+ S+V+ + + GG + + +RDR+ + ++ ALS Sbjct: 186 DLDAAVLAVGQQYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLALS 245 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAWI+G LP V ++ + Y+ + DP G ML+ A ++G +++ + Sbjct: 246 AETRLSAWILGLLPVVVGGIIIMFNATYVMSMWRDPAGKMLMMAAFGLEVMGSLMLARLA 305 Query: 184 N 184 Sbjct: 306 K 306 >gi|85859132|ref|YP_461334.1| flp pilus assembly protein [Syntrophus aciditrophicus SB] gi|85722223|gb|ABC77166.1| flp pilus assembly protein [Syntrophus aciditrophicus SB] Length = 317 Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 73/158 (46%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 ++ I R K ++ FP+ALD++V V AG+ + A+ + + P+ EFR + Sbjct: 156 LRLKIGARKEKIMEGFPDALDLMVICVEAGMGLDQAINRVGEEMKLSCPPISDEFRTLNM 215 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G S E++ M L +V+ T++ Q G ++ +AL S +R ++ +A Sbjct: 216 EMRMGKSRREALRNMANRTELDDVTSLVTLLIQTDQFGTSIGQALRVHSDSMRVQRRQRA 275 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A + K +I + + ++ P + V Sbjct: 276 EEKAAKLPLKLLFPLIFFIFPSLFVVI--MGPAMIQVF 311 >gi|229825136|ref|ZP_04451205.1| hypothetical protein GCWU000182_00487 [Abiotrophia defectiva ATCC 49176] gi|229790508|gb|EEP26622.1| hypothetical protein GCWU000182_00487 [Abiotrophia defectiva ATCC 49176] Length = 245 Score = 82.5 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 79/192 (41%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55 K LI+KR + F L +I+ S++AG + A+ + + +E + Sbjct: 54 KKLIEKRKNELSAQFIEFLQVIMSSLKAGTSLERAILSARERLYSLYNNDSLIITEIISM 113 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + + + + + + + +++++ F+ V V + GGNL + + + + + D+ M Sbjct: 114 ESSLRMNIPVEDILYDFGKRSGIEDINQFAEVCKVSKRAGGNLIKVMDHTIKCIVDKNEM 173 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + ++QA K + + ++ + + + MN L G +++ A Sbjct: 174 EREIQAFISGKKLESKFMTAILPAILLYMNISMADMMNSLYQGILGRLVMSGVLAGYGFC 233 Query: 176 IMVMRLMINFDV 187 + + + V Sbjct: 234 CLWFDKITDIKV 245 >gi|319761633|ref|YP_004125570.1| type ii secretion system f domain protein [Alicycliphilus denitrificans BC] gi|330823499|ref|YP_004386802.1| type II secretion system F domain-containing protein [Alicycliphilus denitrificans K601] gi|317116194|gb|ADU98682.1| Type II secretion system F domain protein [Alicycliphilus denitrificans BC] gi|329308871|gb|AEB83286.1| Type II secretion system F domain protein [Alicycliphilus denitrificans K601] Length = 405 Score = 82.5 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 57/182 (31%), Gaps = 11/182 (6%) Query: 4 LIKKRT----AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIE 57 IKKR K D + ++AG+P+ + ++ ++ V + Sbjct: 51 KIKKRRASGGKKIKPKDIALFTRQMATMMKAGVPLLQSFDIVGRGNTNASVTKLLNDIRA 110 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G SL+ + + + + G L L L+ + + +K+ Sbjct: 111 DVETGTSLNAAFRKYPM-----YFDSLYCNLVEAGEAAGILEALLDRLATYMEKTEAIKS 165 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 K+++ M + + + + V D LL +A + + Sbjct: 166 KIRSALMYPISVLVVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLLVMAISEFFVAYW 225 Query: 178 VM 179 + Sbjct: 226 WL 227 Score = 34.7 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 37/130 (28%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ +A+ + G S + V + T + +S S Sbjct: 275 WTRTLSTMFAAGVPLVEALDSVGGASGNSVY-----AVATDRIQQEVSTGTSLTAAMGNA 329 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G++ L + + + ME ++ + Sbjct: 330 NVFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDEMVAGLSSLMEPIIIVFLGTLIGG 389 Query: 139 CVSTLVYFTS 148 V ++ Sbjct: 390 IVVSMYLPIF 399 >gi|194288828|ref|YP_002004735.1| tad secretion system, secretion accessory protein [Cupriavidus taiwanensis LMG 19424] gi|193222663|emb|CAQ68666.1| Tad secretion system, secretion accessory protein [Cupriavidus taiwanensis LMG 19424] Length = 324 Score = 82.5 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 73/166 (43%), Gaps = 4/166 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + +R ++FP+ +D++ V AGL + A+ + + + E + ++ Sbjct: 157 LARKVSQRQRTVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLL 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S ++++ + +++V F++++ + G +L E+L LS +LR ++ M+A Sbjct: 217 ELRSGFSKEKALTNLSLRTGVEDVDKFASMLIQADRFGTSLGESLRVLSDMLRTKRRMRA 276 Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162 + QA + I P + L+ VL+ G Sbjct: 277 EEQAAKIALKLLFPLIFTIFPSLLLVLLGPAFIQIYRVLLPTMAGQ 322 >gi|254429908|ref|ZP_05043615.1| Bacterial type II secretion system protein F domain [Alcanivorax sp. DG881] gi|196196077|gb|EDX91036.1| Bacterial type II secretion system protein F domain [Alcanivorax sp. DG881] Length = 306 Score = 82.5 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 73/182 (40%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + +++ + P +D +R + AG + ++ + + R+ Sbjct: 119 RFRFQQQRRAIFESLPGIMDSTLRYMGAGRSLEASLLESFQDAPPVFQPLTFRLRSAVES 178 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + R + + S + ++ G ++ L ++ LR ++ ++ + A Sbjct: 179 GRDYTGLFDDFARLYRVPSLVLVSIALRTSARFGSSIRPVLQQVANSLRSQQELRREFLA 238 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + E + +A LP ++ + + Y +VL+ GH +L +A IG++++ Sbjct: 239 STAETRFTAGAFTLLPLGMAVYMMLINEKYADVLLRTDTGHTMLIIAGVLQGIGVVIIWR 298 Query: 182 MI 183 M+ Sbjct: 299 MV 300 >gi|91786744|ref|YP_547696.1| type II secretion system protein [Polaromonas sp. JS666] gi|91695969|gb|ABE42798.1| type II secretion system protein [Polaromonas sp. JS666] Length = 405 Score = 82.5 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 21/167 (12%), Positives = 51/167 (30%), Gaps = 6/167 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D + ++AG+P+ + ++ + V V G SLS + + Sbjct: 66 KDIAIFTRQLATMMKAGVPLLQSFDIVGRGNPNGSVTKLLNDVRTDVETGTSLSAAFRKY 125 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G L L L+ + + +K+K+++ M + + Sbjct: 126 PL-----YFNALYCNLVEAGEAAGILESLLDRLAVYMEKTEAIKSKIKSALMYPISVVVV 180 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + V D L +A + + + Sbjct: 181 AFVVVAVIMIFVIPAFKEVFTSFGADLPAPTLFVIAVSEFFVAYWWL 227 Score = 35.5 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 14/131 (10%), Positives = 40/131 (30%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ +A+ + G S + + ++ + G SL+ ++ Sbjct: 275 WTRTLSTMFAAGVPLVEALDSVGGASGNSLYADATEKIQQEVSTGTSLTAAMGNA----- 329 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G++ L + + + ME ++ + Sbjct: 330 -NLFPTMVLQMCAIGEESGSVDHMLGKAADFYEAEVDEMVAGLSSLMEPIIIVFLGTLIG 388 Query: 138 FCVSTLVYFTS 148 V ++ Sbjct: 389 GIVVSMYLPIF 399 >gi|188997645|ref|YP_001931896.1| type II secretion system protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932712|gb|ACD67342.1| type II secretion system protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 406 Score = 82.5 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 65/185 (35%), Gaps = 13/185 (7%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLS 66 + +D + + AG+ ++ A+ ++ Q +P E V + G+SLS Sbjct: 62 KKKVKEEDLAIFARQLGAMIGAGIGIAQALEILSEQMPNPTLKEALINVKDDVITGMSLS 121 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ + + P F + ++ G L E L + ++ K+ + S Sbjct: 122 KSMQKHPKVFPP-----FLINLIAAAEESGKLDEILKRATIYYEKLAAIRRKIISASWYP 176 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-------AFMLIGIMVM 179 A I + + T V T + + + +IG V+ Sbjct: 177 AAVVIIATVIVLGLLTFVVPTFAEIYASFGGELPLLTQILINISNSLKENILYVIGFFVI 236 Query: 180 RLMIN 184 +++N Sbjct: 237 FVIMN 241 >gi|299069495|emb|CBJ40764.1| Type II secretion system protein [Ralstonia solanacearum CMR15] Length = 308 Score = 82.5 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 83/182 (45%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + ++ + + P LD +VR + G V A + P+R+ + Q G Sbjct: 125 NRTRRMNERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLTSTTQLQRAG 184 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L ++ + + + E+ S+V+ + + GG + + +RDR+ + ++ AL Sbjct: 185 KDLDAAVLAVGQLYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLAL 244 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAWI+G LP V ++ + Y+ + DP G ML+ A ++G +++ + Sbjct: 245 SAETRLSAWILGLLPVVVGGIIIMVNAPYVMSMWRDPSGKMLMMAAFGLEVMGSLILARL 304 Query: 183 IN 184 Sbjct: 305 AK 306 >gi|300021859|ref|YP_003754470.1| type II secretion system protein F [Hyphomicrobium denitrificans ATCC 51888] gi|299523680|gb|ADJ22149.1| Type II secretion system F domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 326 Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 68/158 (43%), Gaps = 4/158 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + + ++KR FP+ALD+++ V++G+ V A A + + ++ + E Sbjct: 167 ISNRVQKRQTSIKQAFPDALDMLLICVQSGMSVEAAFAKVGKEIANQSIELAEEMALTTA 226 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + + L V +T + + G + +AL +++ R+ + +A Sbjct: 227 ELSYLQDRRQAYENLAKRTGLPGVKGVATALVQAERYGTPVGQALRTMAKENREIRQSEA 286 Query: 118 KVQALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + +A ++ K I+ LP ++ GYM + Sbjct: 287 ERKASALPPKLTVPMIVFFLPVLFIVILGPAGIGYMQM 324 >gi|237733160|ref|ZP_04563641.1| predicted protein [Mollicutes bacterium D7] gi|229383704|gb|EEO33795.1| predicted protein [Coprobacillus sp. D7] Length = 315 Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 79/188 (42%), Gaps = 2/188 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIET 58 + + + + +F ++ I + G + +A+ I+ + +S + +E V + Sbjct: 128 VNKRAETKKEELTLEFLEKINEISAHLSVGKTIPNALDEIIKEQNTSQVLINELITVKQN 187 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 +LG LS+S ++ ++E+ F+ +SV + GGN+ E L + + +K Sbjct: 188 LNLGYPLSKSFMLAYEHLQIEEIKTFAMTLSVYEETGGNIIEVLKANDNFFQSKIKIKNT 247 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + K S + +P LV F +P + G ++ +A +F+L GI + Sbjct: 248 QKVYISSLKTSQKLTVGIPLGFIVLVIFINPSFFGDFYGTAVGELVGIIAISFLLFGIFL 307 Query: 179 MRLMINFD 186 + Sbjct: 308 SNKIAKLK 315 >gi|163856390|ref|YP_001630688.1| hypothetical protein Bpet2079 [Bordetella petrii DSM 12804] gi|163260118|emb|CAP42419.1| putative membrane protein [Bordetella petrii] Length = 281 Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 54/176 (30%), Positives = 101/176 (57%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 F P AL + ++RAG+ VS A+ IV S P+ EF ++ Q LG+S +++R Sbjct: 106 FEQQLPGALLALASALRAGVGVSTALRHIVDHSEPPLAQEFGLMLREQRLGVSFDAALAR 165 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + +P + + + + V + GGNL+E L ++R LR+R ++ KV+AL+ + + AW Sbjct: 166 LSQRVPSEASALVAAALRVATHTGGNLAETLDGIARTLRERLQLQGKVRALTAQGRLQAW 225 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 I+G+LP ++ ++ P M +L + P G +L V A G++++R +++ D+ Sbjct: 226 IVGALPLLLAAVLDRMEPDAMAILWHTPLGWAVLAVVAGLETAGVLLIRRIVDIDI 281 >gi|71906278|ref|YP_283865.1| type II secretion system protein [Dechloromonas aromatica RCB] gi|71845899|gb|AAZ45395.1| type II secretion system protein [Dechloromonas aromatica RCB] Length = 408 Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 20/167 (11%), Positives = 49/167 (29%), Gaps = 6/167 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71 D + +++G+P+ + ++ S+ V + G SLS++ + Sbjct: 68 DKDISLFTRQLATMMKSGVPLLQSFDIVGRGHSNPAVGKLLLDIKADVETGSSLSQAFRK 127 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + G L L L+ +K+K+++ A Sbjct: 128 YPLQ-----FDALYCNLVSAGEQAGILDTLLDRLASYKEKILAIKSKIKSALFYPVAILV 182 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + + V D L+ +A + + Sbjct: 183 VAFIITAVIMIFVIPAFKEVFKGFGADLPAPTLIVIAISDFFVAYWW 229 >gi|254419878|ref|ZP_05033602.1| Bacterial type II secretion system protein F domain [Brevundimonas sp. BAL3] gi|196186055|gb|EDX81031.1| Bacterial type II secretion system protein F domain [Brevundimonas sp. BAL3] Length = 326 Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 69/164 (42%), Gaps = 5/164 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + + I KR + FP+ALD+++ V AG+ + A+A + + SS + E + Sbjct: 165 LTNRITKRRTSIMQAFPDALDLLLICVEAGMSIEAAIAKVSQEIGTSSIELAEELSLLSA 224 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + V + ++ G LS AL +++ RD + A Sbjct: 225 ELSYLPDRRMAYENLGKRTNHPGVKSVAVAMTQAETYGTPLSSALRVMAKENRDLRLSAA 284 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + +A ++ A+ + +I + ++ P +N++ +G Sbjct: 285 EKKAAALPAQLTVPMILFFLPVLFIVI--LGPAILNIMDTMAKG 326 >gi|163745841|ref|ZP_02153200.1| type II/IV secretion system protein, TadC subfamily, putative [Oceanibulbus indolifex HEL-45] gi|161380586|gb|EDQ04996.1| type II/IV secretion system protein, TadC subfamily, putative [Oceanibulbus indolifex HEL-45] Length = 326 Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 70/162 (43%), Gaps = 3/162 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ + R + FP+ALD+++ V AG + + + + S + EF V Sbjct: 164 VRRRVDSRKEEITRGFPDALDMMLVCVEAGQSLDQCIVRVGRELRASYPALAEEFEMVAY 223 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G ++ M +Q+VS F TV+ + G ++++AL + +RD++ M+A Sbjct: 224 EMKAGKDRITVLNDMSERCGVQDVSSFVTVLIQSAAFGTSIADALRVYAEEMRDKRVMRA 283 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159 + A + K + +G + ++ S ++ L Sbjct: 284 EEAANKLPTKMTLATMGLTVPPLLIILIGPSAHGISQLGQMG 325 >gi|87199097|ref|YP_496354.1| type II secretion system protein [Novosphingobium aromaticivorans DSM 12444] gi|87134778|gb|ABD25520.1| type II secretion system protein [Novosphingobium aromaticivorans DSM 12444] Length = 335 Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 61/148 (41%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +++L+ KRT P+ALD++V AGL V A + + + + + EF Sbjct: 171 IQNLVSKRTVAVRKGLPDALDLLVICAEAGLTVDAAFSRVARELGRAYPELGDEFALTAI 230 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + L V T + + G L+ AL LS R+ + M+A Sbjct: 231 ELSFLTERRHAFENLAYRVDLDSVKGVVTTMIQTERYGTPLASALRVLSAEFRNERMMRA 290 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A + A + +I + + ++ Sbjct: 291 EEKAARLPAIMTIPLILFILPVLFIVIL 318 >gi|294676064|ref|YP_003576679.1| type II secretion system protein [Rhodobacter capsulatus SB 1003] gi|294474884|gb|ADE84272.1| type II secretion system protein [Rhodobacter capsulatus SB 1003] Length = 337 Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 70/159 (44%), Gaps = 4/159 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + + RT + D FP+ALD+++ V AG + + + + S + EF V Sbjct: 172 VNQRVAARTQEIQDGFPDALDMLLVCVEAGQSLDQGIIRVSKELSSSYPALAEEFATVAH 231 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL + + +V+ F TV+ Q G +++EAL + +RD++ M+A Sbjct: 232 EIKAGLDKPTVLRAFAERSGVSDVASFVTVMIQSQQFGTSIAEALRLYAADMRDKRIMRA 291 Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVL 155 + A + K + ++ ++P + LV + M Sbjct: 292 EEAANKIPTKMTLGTMMFTVPPLLIILVGPSVHDMMENF 330 >gi|163733537|ref|ZP_02140980.1| type II/IV secretion system protein, TadC subfamily, putative [Roseobacter litoralis Och 149] gi|161393325|gb|EDQ17651.1| type II/IV secretion system protein, TadC subfamily, putative [Roseobacter litoralis Och 149] Length = 327 Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 71/165 (43%), Gaps = 3/165 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ + R + FP++LD+++ V AG + + + + S + EF V Sbjct: 163 VRRRVDTRKDEITRGFPDSLDMMLVCVEAGQSLDQCIVRVSKELHASYPALAQEFDVVAY 222 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ +Q+VS F TV++ Q G +++EAL + +RD++ M+A Sbjct: 223 EMKAGKDKTTVLNDFGERCGVQDVSSFVTVLNQSQQFGTSIAEALRVYAGEMRDKRVMRA 282 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162 + A + K + + + ++ S + L N G Sbjct: 283 EEAANKLPTKMTLATMMLTVPPLLIILVGPSVHGITQLGNLGAGQ 327 >gi|121603678|ref|YP_981007.1| type II secretion system protein [Polaromonas naphthalenivorans CJ2] gi|120592647|gb|ABM36086.1| type II secretion system protein [Polaromonas naphthalenivorans CJ2] Length = 405 Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 58/185 (31%), Gaps = 11/185 (5%) Query: 1 MKHLIKKRT----AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRR 54 + IKKR D + ++AG+P+ + ++ + V Sbjct: 48 LASKIKKRRMRSGKAIKPRDIAIFTRQLATMMKAGVPLLQSFDIVGRGNPNGSVTKLLND 107 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 V G SLS + + + + + G L L L+ + + Sbjct: 108 VRTDVETGTSLSGAFRKYPM-----YFNALYCNLVEAGEAAGILESLLDRLAIYMEKTEA 162 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 +K+K+++ M + + + + V + + L+ +A + + Sbjct: 163 IKSKIKSALMYPASVVVVAFVVVAVIMIFVIPAFKQVFSSFGAELPAPTLIVMAISEFFV 222 Query: 175 GIMVM 179 + Sbjct: 223 AYWWL 227 Score = 34.3 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 14/131 (10%), Positives = 40/131 (30%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ +A+ + G S + + ++ + G SL+ ++ Sbjct: 275 WTRTLSTMFAAGVPLVEALDSVGGASGNSLYADATEKIQQEVSTGTSLTAAMGNA----- 329 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G++ L + + + ME ++ + Sbjct: 330 -NLFPTMVLQMCAIGEESGSVDHMLGKAADFYEAEVDEMVAGLSSLMEPIIIVFLGTLIG 388 Query: 138 FCVSTLVYFTS 148 V ++ Sbjct: 389 GIVVSMYLPIF 399 >gi|126725975|ref|ZP_01741817.1| type II/IV secretion system protein, TadC subfamily [Rhodobacterales bacterium HTCC2150] gi|126705179|gb|EBA04270.1| type II/IV secretion system protein, TadC subfamily [Rhodobacterales bacterium HTCC2150] Length = 318 Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 61/148 (41%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + R + FP++LD+++ V +G + A+ + + + EF V Sbjct: 160 VTRRRGTRQKNIIQAFPDSLDLMLICVESGQSLDQAIIKVSKEIRAGYPDLADEFELVAY 219 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + + ++S F +V+ + G ++EAL S +RD++ M+A Sbjct: 220 EIKAGKDKKRVLKDFSERCGVPDISSFVSVLIQAATYGTPIAEALRAYSAEMRDKRVMRA 279 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + + + ++ Sbjct: 280 EEKANTLPVKMTLGTMVFCLPSLLIILV 307 >gi|241760203|ref|ZP_04758299.1| pilin biogenesis protein [Neisseria flavescens SK114] gi|241319314|gb|EER55779.1| pilin biogenesis protein [Neisseria flavescens SK114] Length = 413 Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 64/187 (34%), Gaps = 7/187 (3%) Query: 1 MKHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIET 58 + + R + +D + ++AGLP+ A ++ S+ + +V Sbjct: 59 ISKVKTARKRRITQEDITVFTRQLATMMKAGLPLMQAFEIVARGHSNPSMTEMLMQVRSD 118 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G +L +S S+ + F + + GG L L L+ + +K K Sbjct: 119 VEQGSALGKSFSKYPK-----YFDRFYCNLVSAGESGGVLESLLDKLAVYKEKTQAIKKK 173 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 V+ A + +L F + V + + L ++ + + + Sbjct: 174 VKTALTYPIAIIVVAIALIFIMMMFVLPAFKEVYANMGAELPSLTQLVMSLSDLFVDYGW 233 Query: 179 MRLMINF 185 + +++ Sbjct: 234 IMIILLI 240 >gi|227494921|ref|ZP_03925237.1| type II secretion system protein [Actinomyces coleocanis DSM 15436] gi|226831373|gb|EEH63756.1| type II secretion system protein [Actinomyces coleocanis DSM 15436] Length = 291 Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 81/187 (43%), Gaps = 3/187 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ ++KR F +P+ +D ++ +VRAG+ + +AV + + R+ F+ Sbjct: 102 LRARLQKRQQLFAGAWPDIVDSLLTAVRAGVSLPEAVVQLSHSGPEITRTYFQHFAMEYR 161 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKV 119 +++ + + VI + ++GG+ + L +LS ++R+ + ++ Sbjct: 162 SSGKFDVALTSLQSNFADKNSKRVFEVIRLGREVGGSEMGNILRDLSAMMRENLRISGEI 221 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 QA +A + + P+ V ++ + + + G M+L + +M Sbjct: 222 QARQSWTVNAARLAVAAPWIVLLMISMRTDAASS--YSTTNGMMILALGGIACTFAYWLM 279 Query: 180 RLMINFD 186 + + +FD Sbjct: 280 QKLGSFD 286 >gi|148253056|ref|YP_001237641.1| putative Type II secretion system protein [Bradyrhizobium sp. BTAi1] gi|146405229|gb|ABQ33735.1| putative Type II secretion system protein precursor [Bradyrhizobium sp. BTAi1] Length = 329 Score = 82.1 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 57/184 (30%), Positives = 103/184 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + K+ F+D FP+A+D + R +RAGLP++ A+ + S PV F + + Sbjct: 141 LSREQKQTERMFVDLFPDAVDTVARMLRAGLPITVAMRTVAVDGSPPVSRVFGLIADELR 200 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E++ R + L + FF+ +++Q GGNL+ L +LS I+R R+ + K + Sbjct: 201 IGVPLEEALDTNSREIGLPDFRFFAVAMTLQFATGGNLTATLESLSDIIRKRRAARLKAK 260 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A + E + +A+ +G++P + + P Y+ L DPRGH++L +A A +L+ + MR Sbjct: 261 AATGEIRLTAYTLGAIPILTTGALLVVQPRYLTPLWTDPRGHLILVLAGALLLLSFLTMR 320 Query: 181 LMIN 184 M+ Sbjct: 321 KMMR 324 >gi|212224827|ref|YP_002308063.1| hypothetical protein TON_1676 [Thermococcus onnurineus NA1] gi|212009784|gb|ACJ17166.1| conserved hypothetical membrane protein [Thermococcus onnurineus NA1] Length = 355 Score = 82.1 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 72/181 (39%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K + K+R + P AL + + AG+ +S+A+ + + EF ++ Sbjct: 169 KMMWKRRVVEVERAMPYALRHMASLLSAGVGISEAILSVARADYGVISEEFELILRDMRT 228 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S E++++ M + VS I + GGNLSE L ++ MK Sbjct: 229 GSSFEEALTKFDEKMSSENVSRVVKQILRAVKFGGNLSEVLYKMAEDFAFEYRMKLIEYV 288 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + A ++ ++ +V + M + P + + + AF + +++ + Sbjct: 289 QRVNGIAFIYMFITIVMPTMFVVGILAGSVMAQSLIMPPETLAVILLFAFPALSFIIVNM 348 Query: 182 M 182 + Sbjct: 349 I 349 >gi|197123313|ref|YP_002135264.1| type II secretion system protein [Anaeromyxobacter sp. K] gi|196173162|gb|ACG74135.1| type II secretion system protein [Anaeromyxobacter sp. K] Length = 306 Score = 82.1 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 66/165 (40%), Gaps = 4/165 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ ++ R + P+ALD++V V AGL + A+ + + + + E R V Sbjct: 140 LRSRVQARQTQLDRSLPDALDLLVTCVEAGLGLDSALQRVSDEVALAHPLLSKELRLVFL 199 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ + RM E+ S ++ G ++ AL + +R R+ +A Sbjct: 200 EVKAGIPRIAAFRRMAERTGAPELRSLSATLAQTELFGTSVGAALRIQAEGIRIRRMHRA 259 Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + +A + K S ++ LP + ++ + L G Sbjct: 260 EEKAAYVSVKMSLPLVLCILPCVFAVVLGPAVVNMADRLFPLLGG 304 >gi|291548759|emb|CBL25021.1| Flp pilus assembly protein TadB [Ruminococcus torques L2-14] Length = 251 Score = 82.1 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 79/186 (42%), Gaps = 6/186 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRRVIETQHL 61 + +F F +++ + +++AG V +A+ +R E+ +++ L Sbjct: 66 KEQEFRRQFRDSIQTMAGALKAGYSVENAIRETNRDLIGMYDANTRIRKEYGQMVRRLDL 125 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 LS+ ++ + ++V+ F TV + GG+ + + +R + ++ + + ++Q Sbjct: 126 NLSVVTVLNEFAAEVKQEDVTNFITVYAAAKVSGGDSIAIIRDAARTIGEKIDTEREIQT 185 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + K I+ +PF + + T +++VL G +++ + L Sbjct: 186 MLAAKKLEFEIMSVIPFIMILYMKMTFGEFLSVLYGTWTGCIVMSICLVLYLGAYRFGWR 245 Query: 182 MINFDV 187 ++ ++ Sbjct: 246 LLQIEI 251 >gi|222147177|ref|YP_002548134.1| component of type IV pilus [Agrobacterium vitis S4] gi|221734167|gb|ACM35130.1| component of type IV pilus [Agrobacterium vitis S4] Length = 326 Score = 81.7 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 57/148 (38%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + I KR +P+ALD+++ V +G+ + A+ + + S + E Sbjct: 168 ISNRITKRQHSIRRAWPDALDLMLICVESGMSMEAAMRRVADEMASQSPALAEEMVLTTA 227 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + L+ V + + G + +AL L++ RD + A Sbjct: 228 ELSFLQDRRTAYENLGNRTQLEIVKSVCQALIQAERYGTPIGQALRVLAQEGRDERMNAA 287 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 288 EKKAAALPPKLTVPMILFFLPVLVAVIL 315 >gi|154507637|ref|ZP_02043279.1| hypothetical protein ACTODO_00118 [Actinomyces odontolyticus ATCC 17982] gi|153797271|gb|EDN79691.1| hypothetical protein ACTODO_00118 [Actinomyces odontolyticus ATCC 17982] Length = 292 Score = 81.7 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 65/177 (36%), Gaps = 3/177 (1%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 +P +D +V VRAG + + + + PVR F ++ Sbjct: 107 KTVRAAWPEVIDAMVSGVRAGTALPQVLCDLAEEGPVPVRFAFEAFSRDYSANGRFELAL 166 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 M + + + G +L+ L +L+ +LR+ ++ +++A Sbjct: 167 DTMKETVADPVADRIVEALRIARSVGGADLTRLLQDLASLLREDARVRGELEARQSWTVG 226 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +A + + P+ V L+ + N P G +L A +I ++M+ M Sbjct: 227 AARLGLAAPWVVLLLLSGGGAN--AHVWNSPGGVAVLCSGAGICVIAYLIMKAMGRL 281 >gi|332526519|ref|ZP_08402631.1| pilus tip-associated protein [Rubrivivax benzoatilyticus JA2] gi|332110787|gb|EGJ10964.1| pilus tip-associated protein [Rubrivivax benzoatilyticus JA2] Length = 410 Score = 81.7 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 56/182 (30%), Gaps = 10/182 (5%) Query: 1 MKHLIKKR----TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRV 55 + + K+R + D + ++AG+P+ A ++ S+ + + Sbjct: 54 VTKVKKRRTSGGRSIKQKDIAIFTRQLATMMKAGVPLLQAFDIVARGASNPRMTKLLNDI 113 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 G SLS + + ++ + + GG L L L+ + Sbjct: 114 RSDVETGTSLSAAFRKHPQH-----FDSLYCNLIEAGEAGGILEALLERLAIYQEKTMAL 168 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K K+++ M A + + + V D L +A + + Sbjct: 169 KQKIKSALMYPIAVMVVAFVVLTVIMIWVIPAFKEVFRSFGADLPAPTLFVIALSEFFVN 228 Query: 176 IM 177 Sbjct: 229 WW 230 Score = 35.5 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 39/130 (30%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ +A+ + G S + V T+ + +S + Sbjct: 280 WTRTLSTMFAAGVPLVEALDSVGGASGNAVY-----AQATEQIQKDVSTGSALTTSMTAT 334 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 +S + G+L L + + + K + ME + + Sbjct: 335 SVFPTMVLQMSAIGEESGSLDHMLGKAAEFYEEEVDDMVKGLSSLMEPFIIVILGVLIGG 394 Query: 139 CVSTLVYFTS 148 V ++ Sbjct: 395 IVVSMYLPIF 404 >gi|110632959|ref|YP_673167.1| type II secretion system protein [Mesorhizobium sp. BNC1] gi|110283943|gb|ABG62002.1| type II secretion system protein [Chelativorans sp. BNC1] Length = 323 Score = 81.7 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 60/148 (40%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +++ I KR +P ALD+++ V +G+ + A + + S + E Sbjct: 165 IRNKITKRQKAIQRAWPEALDLLLICVESGMSIESAFRKVAEEIGTQSAEIAEEIALTTA 224 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + R ++ V T + + G L +AL +++ RD + +A Sbjct: 225 ELSFLQDRRQAYENLGRRTGVEGVRAAVTSLIQAEKYGTPLGQALRVMAQENRDMRMSEA 284 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 285 EKRAAALPPKLTVPMIVFFLPVLFAVII 312 >gi|17549305|ref|NP_522645.1| pilus assembly transmembrane protein [Ralstonia solanacearum GMI1000] gi|17431557|emb|CAD18235.1| probable pilus assembly tadb transmembrane protein [Ralstonia solanacearum GMI1000] Length = 308 Score = 81.7 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 84/182 (46%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + ++ + + P LD +VR + G V A + P+R+ + + Q G Sbjct: 125 NRTRRMNERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLTSITQLQRAG 184 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L ++ + + + E+ S+V+ + + GG + + +RDR+ + ++ AL Sbjct: 185 KDLDAAVLAVGQLYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQKELLAL 244 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAWI+G LP V ++ + Y+ + DP G ML+ A ++G +++ + Sbjct: 245 SAETRMSAWILGLLPVVVGGIIIMFNAAYVMSMWRDPSGKMLMMAAFGLEVMGSLMLARL 304 Query: 183 IN 184 Sbjct: 305 AK 306 >gi|187926430|ref|YP_001892775.1| type II secretion system protein [Ralstonia pickettii 12J] gi|241665917|ref|YP_002984276.1| type II secretion system protein [Ralstonia pickettii 12D] gi|187728184|gb|ACD29348.1| type II secretion system protein [Ralstonia pickettii 12J] gi|240867944|gb|ACS65604.1| type II secretion system protein [Ralstonia pickettii 12D] Length = 308 Score = 81.7 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 83/182 (45%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + +K + L P LD +VR + G V A + P+R+ + + Q G Sbjct: 125 NRTRKMNERLLQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEQPLRNCLTAITQMQRAG 184 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L ++ + R + E+ S+V+ + + GG + + +RDR+ + ++ AL Sbjct: 185 KDLDAAVLTVGRQYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQRELFAL 244 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAWIIG LP V ++ + Y+ + DP G L+ A ++G +++ + Sbjct: 245 SAETRLSAWIIGLLPVVVGGVIIMFNAAYIMSMWRDPFGKTLILTAFGMEVLGAVMLARL 304 Query: 183 IN 184 Sbjct: 305 AK 306 >gi|294338834|emb|CAZ87168.1| type 4 fimbrial assembly protein [Thiomonas sp. 3As] Length = 406 Score = 81.7 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 21/184 (11%), Positives = 54/184 (29%), Gaps = 10/184 (5%) Query: 1 MKHLIKKR----TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRV 55 + + K+R A D + ++AG+P+ + ++ + + Sbjct: 49 VTKVKKRRLTSGKAIKAKDISTFTRQMSTMIKAGVPLLQSFDIVGRGHPNPNMARLIMDI 108 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 G SLS + + + + + G L L L+ + Sbjct: 109 RGDVETGTSLSNAFRKHPK-----YFDALYCNLVEAGETAGMLELVLDRLATYQEKSLAI 163 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 ++K+++ A + + + V + L+ VA + + Sbjct: 164 RSKIKSALTYPIAVMVVAFVVVSIIMLFVVPVFTDVFSQFGASLPAPTLMVVAISNFFVH 223 Query: 176 IMVM 179 + Sbjct: 224 YWYI 227 Score = 38.9 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 18/135 (13%), Positives = 45/135 (33%), Gaps = 7/135 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMV 73 + AG+P+ +A+ + G + + V ++ + G SL+ S+ Sbjct: 271 ALARWTRTLATMFGAGVPLVEALDAVGGAAGNIVYLRATEKIQQDVSTGTSLTTSMQTQG 330 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + P ++ + G+L L+ + I + K + +E ++ Sbjct: 331 VFPP------LVIQLTSIGEESGSLDSMLSKAADIYEAEVDELVKNLSALLEPIIIVFLG 384 Query: 134 GSLPFCVSTLVYFTS 148 + V + Sbjct: 385 VIIGGLVVAMYLPIF 399 >gi|121610838|ref|YP_998645.1| type II secretion system protein [Verminephrobacter eiseniae EF01-2] gi|121555478|gb|ABM59627.1| type II secretion system protein [Verminephrobacter eiseniae EF01-2] Length = 407 Score = 81.7 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 57/182 (31%), Gaps = 10/182 (5%) Query: 3 HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIE 57 + ++R D + ++AG+P+ + ++ ++ V + Sbjct: 53 KIKERRMRSGKKVKPKDIALFTRQLATMMKAGVPLLQSFDIVGRGSTNPSVTKLLNDIRS 112 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G SLS + + + + + G L L L+ + + +K+ Sbjct: 113 DIETGTSLSGAFRHYPK-----YFNELYCNLVEAGETAGILESLLDRLATYMEKTEAIKS 167 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++++ M A + + + V D LL +A + + Sbjct: 168 RIKSALMYPSAVLCVAFVVVSLIMVFVIPAFKEVFTSFGADLPPPTLLVMAISETFVHWW 227 Query: 178 VM 179 + Sbjct: 228 WL 229 Score = 36.3 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 14/131 (10%), Positives = 41/131 (31%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ +A+ + G + + V + ++ + G SL+ ++ Sbjct: 277 WTRTLSTMFAAGVPLVEALDSVGGAAGNSVYASVTDKIQQEVSTGTSLTVAMGNA----- 331 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G++ L + + + ME ++ + Sbjct: 332 -NIFPTMVLQMCAIGEETGSIDHMLGKAADFYEAEVDTMVAGISSLMEPIIIVFLGCLIG 390 Query: 138 FCVSTLVYFTS 148 V ++ Sbjct: 391 GIVISMYLPIF 401 >gi|167648147|ref|YP_001685810.1| type II secretion system protein [Caulobacter sp. K31] gi|167350577|gb|ABZ73312.1| type II secretion system protein [Caulobacter sp. K31] Length = 328 Score = 81.7 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 65/158 (41%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 + ++ +KR + FP+ALD+++ V +G+ + A+A + + + E + Sbjct: 163 ISNIAQKRRESIVAAFPDALDLMLICVESGMSIEAAIAKVGAEVGGASIELAEELSLLTA 222 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + R + T + + G L AL +++ RD + A Sbjct: 223 ELSYLPERRLAYEGLARRTNHPGIRSVVTAMIQAERYGTPLGAALRVMAKENRDLRLSAA 282 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A ++ AK + +I + ++ P +N++ Sbjct: 283 EKKAAALPAKLTVPMILFFLPVLFIVI--MGPAAINIM 318 >gi|254475205|ref|ZP_05088591.1| type II/IV secretion system protein, TadC subfamily [Ruegeria sp. R11] gi|214029448|gb|EEB70283.1| type II/IV secretion system protein, TadC subfamily [Ruegeria sp. R11] Length = 327 Score = 81.7 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 71/160 (44%), Gaps = 3/160 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + I++R + FP+ALD+++ V AG + A+ + + S + EF V Sbjct: 165 ITRRIEERKQEITSGFPDALDMMLVCVEAGQSLDQAIVRVAKELHASYPALAEEFEVVAY 224 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + + M +Q+VS F TV+ + G ++++AL + +RD++ M+A Sbjct: 225 EMKAGKEKDKVLRDMGTRCGVQDVSSFVTVMIQSATFGTSIADALRVYAGEMRDKRVMRA 284 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + A + K + + + ++ S + L N Sbjct: 285 EEAANKLPTKMTLATMTLTVPPLLIILVGPSAQGIANLGN 324 >gi|300697739|ref|YP_003748400.1| type II secretion system protein [Ralstonia solanacearum CFBP2957] gi|299074463|emb|CBJ54013.1| Type II secretion system protein [Ralstonia solanacearum CFBP2957] Length = 318 Score = 81.7 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 41/181 (22%), Positives = 82/181 (45%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++ + + P LD +VR + G V A + P+R+ + Q G Sbjct: 136 RTRRMNERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLALTTQLQRAGK 195 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L ++ + + + E+ S+V+ + + GG + + +RDR+ + ++ ALS Sbjct: 196 DLDAAVLAVGQLYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLALS 255 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAWI+G LP V ++ + Y+ + DP G ML+ A ++G +++ + Sbjct: 256 AETRLSAWILGLLPVVVGGIIIMFNATYVMSMWRDPVGKMLMMAAFGLEVMGSLMLARLA 315 Query: 184 N 184 Sbjct: 316 K 316 >gi|259418040|ref|ZP_05741959.1| type II secretion system protein [Silicibacter sp. TrichCH4B] gi|259346946|gb|EEW58760.1| type II secretion system protein [Silicibacter sp. TrichCH4B] Length = 323 Score = 81.3 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 67/149 (44%), Gaps = 3/149 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + I++R FP+ALD+++ V AG + A+ + + S + EF V Sbjct: 164 ITRRIEERKQAITRAFPDALDMMLVCVEAGQSLDQAIVRVGKELRASYPELAEEFEIVAY 223 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + + M +Q+V+ F TV+ + G ++++AL + +RD++ M+A Sbjct: 224 EMKAGKEKDKVLRDMGTRCGVQDVASFVTVMIQSAAFGTSIADALRVYAGEMRDKRVMRA 283 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF 146 + A + K + +G + ++ Sbjct: 284 EEAANKLPTKMTLATMGLTVPPLLAILIA 312 >gi|126737249|ref|ZP_01752984.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. SK209-2-6] gi|126721834|gb|EBA18537.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. SK209-2-6] Length = 322 Score = 81.3 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 70/162 (43%), Gaps = 3/162 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + +++R K FP++LD+++ V AG + ++ + + + EF V + Sbjct: 160 VTRRVEERRQKIEQGFPDSLDMMLVCVEAGQSLDQSIVRVATELRASFPDLAYEFEIVAQ 219 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + + M +Q++S F TV+ G ++++AL + +RD++ M+A Sbjct: 220 EMKAGKDKEKVLRDMGTRCGVQDISSFVTVMIQSQSFGTSIADALRVYAGEMRDKRVMRA 279 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159 + A + K + + + ++ S + + N Sbjct: 280 EEAANKLPVKMTLATMMLTVPPLLIILVGPSVQGILNMGNTG 321 >gi|83718164|ref|YP_440464.1| hypothetical protein BTH_II2276 [Burkholderia thailandensis E264] gi|83651989|gb|ABC36053.1| membrane protein, putative [Burkholderia thailandensis E264] Length = 296 Score = 81.3 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 68/165 (41%), Gaps = 4/165 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + I R ++DFP+ALD++ V AGL + A+ + + S V E ++ Sbjct: 131 LARRIASRQRMIIEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLL 190 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + ++V FS ++ + G ++ +L LS LR ++ M+A Sbjct: 191 EMRSGFTKEAALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 250 Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + +A + I P ++ L+ L+ G Sbjct: 251 EERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRTLLPTMAG 295 >gi|86137998|ref|ZP_01056574.1| type II/IV secretion system protein, TadC subfamily protein [Roseobacter sp. MED193] gi|85825590|gb|EAQ45789.1| type II/IV secretion system protein, TadC subfamily protein [Roseobacter sp. MED193] Length = 326 Score = 81.3 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 70/160 (43%), Gaps = 3/160 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + I +R + FP++LD+++ V AG + ++ + + S + EF V Sbjct: 164 VTRRIAERKEEIEAGFPDSLDMMLVCVEAGQSLDQSIVRVASELKASYPQLDYEFDIVAH 223 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + + M +Q++S F TV+ + G +++EAL + +RD++ M+A Sbjct: 224 EMKAGKDKEKVLRDMGTRCGVQDISSFVTVMIQSAAFGTSIAEALRVYASEMRDKRVMRA 283 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + A + K + + + ++ S + + N Sbjct: 284 EEAANKLPVKMTLATMMLTVPPLLIILVGPSVKNIMNMGN 323 >gi|269836553|ref|YP_003318781.1| type II secretion system protein [Sphaerobacter thermophilus DSM 20745] gi|269785816|gb|ACZ37959.1| type II secretion system protein [Sphaerobacter thermophilus DSM 20745] Length = 307 Score = 81.3 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 73/157 (46%), Gaps = 1/157 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + IK+R + + P+A+D++ SV AGL A+ +V + + + EF R++ Sbjct: 150 LGNRIKRRKSAIIRALPDAIDLLTISVEAGLGFDPALQRVVEKWDNELTREFARMLSEIR 209 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S E++ + + +++ F + + QLG ++++ L S+ +R R+ +A+ Q Sbjct: 210 MGQSRREALRDLAERTNVDDLNVFVSAVVQADQLGVSITQVLRVQSKQMRMRRRQRAEEQ 269 Query: 121 ALSMEAKA-SAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 A K + P L+ P + + Sbjct: 270 AHKAPVKMIFPMVFLIFPALYIVLLGPAVPIVWDAFM 306 >gi|310640813|ref|YP_003945571.1| flp pilus assembly protein tadb-like protein [Paenibacillus polymyxa SC2] gi|309245763|gb|ADO55330.1| Flp pilus assembly protein TadB-like protein [Paenibacillus polymyxa SC2] Length = 263 Score = 81.3 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 80/193 (41%), Gaps = 8/193 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFRR 54 K L+++R + F AL + S+ AG V + V + EF Sbjct: 72 KFLLQRRRSALSIQFKQALYSLSSSLSAGRSVENGFREAVEDLRLLSPDGDHDLIFEFNI 131 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 + +G + ++ + R +++++ F+ V + + GG+L E + S ++ ++ Sbjct: 132 ITACLEIGQPVEAALQDLARRAQIEDITNFADVFAACKRTGGDLVEVVRRASSVIGEKLE 191 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 ++ ++ + + + + ++ + PF + T+ YM L G +L + Sbjct: 192 IQQEIGVMIAQKRFESRVMFAAPFLFVLFMTVTAGDYMMPLY-SGTGMILSTFCLLVLGG 250 Query: 175 GIMVMRLMINFDV 187 ++ + ++ +V Sbjct: 251 CLVWINHIMKIEV 263 >gi|219850073|ref|YP_002464506.1| type II secretion system protein [Chloroflexus aggregans DSM 9485] gi|219544332|gb|ACL26070.1| type II secretion system protein [Chloroflexus aggregans DSM 9485] Length = 311 Score = 81.3 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 1/163 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + IK+R L P+ALD++ SV AGL A+ + + + + EF+RV++ Sbjct: 147 LDRKIKERKKNILKALPDALDLLCISVEAGLAFDLALQRVAQKWDNELSHEFQRVLQDIR 206 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + E++ M +++V F + + QLG ++S+ L S LR R+ +A+ Sbjct: 207 LGRTRREALRDMAARTGVEDVQTFVSAVIQADQLGVSMSKILRIQSDQLRTRRRQRAEEA 266 Query: 121 ALSMEAKA-SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162 A K + P ++ P M+ L G Sbjct: 267 AQKAPVKMLIPMVFLIFPALFVVILGPAVPRIMSALGVMNSGM 309 >gi|298345275|ref|YP_003717962.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063] gi|298235336|gb|ADI66468.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063] Length = 295 Score = 81.3 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 75/175 (42%), Gaps = 3/175 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 +PN +D +V VRAGL + + + + ++ +R F G +L S+ + Sbjct: 116 KAWPNLVDDLVSGVRAGLSLGETLLEVAARAPKSLRVPFAHFAADYRAGGNLDASLKILK 175 Query: 74 RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R + + + +Q G +L L +L +LR + + +V A A + Sbjct: 176 RELADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLARQSWTVTGARL 235 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + P+ + L+ + PG + V + P G M+L V A + ++M + +V Sbjct: 236 AAASPWIILALL-LSRPGTLEV-YSTPVGSMILLVGALVSALAYLMMLRLGRLEV 288 >gi|239917279|ref|YP_002956837.1| Flp pilus assembly protein TadB [Micrococcus luteus NCTC 2665] gi|281414243|ref|ZP_06245985.1| Flp pilus assembly protein TadB [Micrococcus luteus NCTC 2665] gi|239838486|gb|ACS30283.1| Flp pilus assembly protein TadB [Micrococcus luteus NCTC 2665] Length = 285 Score = 81.3 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 70/183 (38%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R+ + +P+A+D ++RAGL + +A+ + + +R F++ Sbjct: 94 LSWQARRRSTALRELWPDAIDHARSAIRAGLTLPEALIQLGETGPEGLREPFQQFARDYR 153 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKV 119 G +++ R+ M + + + G ++ L LS LR ++A++ Sbjct: 154 AGARFVDALDRLKARMADPVADRLVVSLRLTREVGGADIGRLLQTLSEFLRQDARIRAEL 213 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +A +A + P+ V L+ G +L ++ VM Sbjct: 214 EARQSWTVNAARLAVCAPWLVLLLLGT--QPAAVAAYRSAAGGAVLLAGMVASVVCYRVM 271 Query: 180 RLM 182 + Sbjct: 272 LRI 274 >gi|315655695|ref|ZP_07908593.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333] gi|315489759|gb|EFU79386.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333] Length = 295 Score = 81.3 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 75/175 (42%), Gaps = 3/175 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 +PN +D +V VRAGL + + + + ++ +R F G +L S+ + Sbjct: 116 KAWPNLVDDLVSGVRAGLSLGETLLEVAARAPKSLRVPFAHFAADYRAGGNLDASLKILK 175 Query: 74 RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R + + + +Q G +L L +L +LR + + +V A A + Sbjct: 176 RELADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLARQSWTVTGARL 235 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + P+ + L+ + PG + V + P G M+L V A + ++M + +V Sbjct: 236 AAASPWIILALL-LSRPGTLEV-YSTPVGSMILLVGALVSALAYLMMLRLGRLEV 288 >gi|148557757|ref|YP_001265339.1| type II secretion system protein [Sphingomonas wittichii RW1] gi|148502947|gb|ABQ71201.1| type II secretion system protein [Sphingomonas wittichii RW1] Length = 330 Score = 81.3 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 60/148 (40%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +K+LI KR P+ALD++V AGL V A + + + + EF Sbjct: 170 VKNLITKRQQAIRKALPDALDLLVICAEAGLSVDLAFNRVARELSKAYPELGDEFALTAI 229 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + + + L + T + + G L+ AL LS R + M+A Sbjct: 230 ELGFLTDRRQAFENLAQRVNLDSIRGVVTTMIQTEKYGTPLAAALRVLSAEFRHERMMRA 289 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A + A + +I + + ++ Sbjct: 290 EEKAARLPAIMTVPLIMFILPVLFIVIL 317 >gi|313906428|ref|ZP_07839765.1| conserved hypothetical protein [Eubacterium cellulosolvens 6] gi|313468729|gb|EFR64094.1| conserved hypothetical protein [Eubacterium cellulosolvens 6] Length = 238 Score = 81.3 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 71/190 (37%), Gaps = 6/190 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRVIE 57 L KR F + L + ++ AG V + V D + E ++ Sbjct: 49 LAWKRKQLLHYHFRDFLAALHTAMLAGYSVENGVKQAAKDLERLYGSSDVLCVELHDILR 108 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 H + + R L+++ F+ ++S+ + GGN++ L R L + + K Sbjct: 109 QMHFQKPVEVLFRDLGRRSGLEDIRNFAEILSIAKRTGGNMNMILQCTWRNLCGKIDTKQ 168 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++ + K ++ +P + + T G++ + +P G +++ V Sbjct: 169 EIDTMIAARKYEQKLMSLMPAGIILYLRLTFQGFIERMYGNPAGVLVMTVCLGVYAGAYF 228 Query: 178 VMRLMINFDV 187 + + + V Sbjct: 229 FGKKLTDIRV 238 >gi|148655544|ref|YP_001275749.1| type II secretion system protein [Roseiflexus sp. RS-1] gi|148567654|gb|ABQ89799.1| type II secretion system protein [Roseiflexus sp. RS-1] Length = 299 Score = 81.3 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 58/146 (39%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +K+R P+ LD++ V AG+ A+ ++V + P+ E R++ Sbjct: 137 LRGRVKQRQHAITVALPDLLDMLAVCVSAGMGFDIALTLLVERGEGPLYEEMGRMLHELQ 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G ++ + + F + +LG ++ L + +R + +A+ + Sbjct: 197 MGAPREQAFRNLAARNSSDALRGFIDALLQAEELGSPIATTLERQAEDIRTGRRYRAREE 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146 K + ++ + V L+ Sbjct: 257 GAKAATKITLIVVVLVTPSVLCLIIA 282 >gi|293189315|ref|ZP_06608038.1| putative bacterial type II secretion system protein F domain protein [Actinomyces odontolyticus F0309] gi|292821778|gb|EFF80714.1| putative bacterial type II secretion system protein F domain protein [Actinomyces odontolyticus F0309] Length = 291 Score = 81.3 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 66/177 (37%), Gaps = 3/177 (1%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 +P +D +V VRAG + + + + PVR F ++ Sbjct: 107 KTVRAAWPEVIDAMVSGVRAGTALPQVLCDLADEGPVPVRFAFEAFSRDYSANGRFELAL 166 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 M + + + G +L+ L +L+ +LR+ ++ +++A Sbjct: 167 DTMKETVADPVADRIVEALRIARSVGGADLTRLLQDLASLLREDARVRGELEARQSWTVG 226 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +A + + P+ V L+ G + N P G +L A +I ++M+ M Sbjct: 227 AARLGLAAPWVVLLLLS--GGGASAHVWNSPGGVAVLCSGAGICVIAYLIMKAMGRL 281 >gi|149186259|ref|ZP_01864573.1| hypothetical protein ED21_31019 [Erythrobacter sp. SD-21] gi|148830290|gb|EDL48727.1| hypothetical protein ED21_31019 [Erythrobacter sp. SD-21] Length = 329 Score = 81.3 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 60/148 (40%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + ++ KRT P+ALD++V AGL V A + + + + EF Sbjct: 169 LSNIASKRTDAIRKGLPDALDLLVICAEAGLTVDAAFNRVAKELGRAYPELGDEFALTAI 228 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + + L+ V T + + G L+ AL LS R+ + M+A Sbjct: 229 ELSFLNERKKAFDNLAYRVNLEAVKGVVTTMVQTERYGTPLASALRVLSAEFRNERMMRA 288 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A + A + +I + + ++ Sbjct: 289 EEKAARLPAIMTVPLIMFILPVLFIVIL 316 >gi|114764951|ref|ZP_01444124.1| Putative Flp pilus assembly protein TadC [Pelagibaca bermudensis HTCC2601] gi|114542663|gb|EAU45687.1| Putative Flp pilus assembly protein TadC [Roseovarius sp. HTCC2601] Length = 323 Score = 81.3 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 70/148 (47%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + +++R + + FP+ALD+++ V AG + ++ + + S + EF + Sbjct: 161 ITKRVEERKKQIEEGFPDALDMMLVCVEAGQSLDQSIVRVSKEIRASYAALADEFEIISH 220 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ M + +VS F TV++ S G ++++AL + +RD++ M+A Sbjct: 221 EMKAGKDKASVLNDMGERCGVADVSSFVTVLNQASTFGTSIADALRIYASEMRDKRVMRA 280 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A + K + + + ++ Sbjct: 281 EEKANKLPTKMTLTTMMLTVPPLLIILV 308 >gi|239629081|ref|ZP_04672112.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519227|gb|EEQ59093.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 227 Score = 81.3 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 78/192 (40%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRV 55 + L ++R + F + ++ + AG + + +A+ G+ + EF + Sbjct: 36 RDLRQERIRQLGLQFKEGILVLASYLGAGYSLENGLAMCTGELEGIYGKQGMITEEFSTL 95 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + + + L++V F+ V + + GG L + + I+RD+ + Sbjct: 96 TNGVRMNRPVELLLMEFGARSGLEDVDHFAQVFAAARRSGGELVGIINYTAGIIRDKVQV 155 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + ++ ++ I+ +PF + + TS G+ V+ G ++ + A L Sbjct: 156 QEEIHTMTAARVFEQKIMNGIPFLIVLYIDLTSLGFFRVMYETMMGRAVMTICLAVYLGA 215 Query: 176 IMVMRLMINFDV 187 M+ + ++ +V Sbjct: 216 WMLSKKILEIEV 227 >gi|329847258|ref|ZP_08262286.1| bacterial type II secretion system protein F domain protein [Asticcacaulis biprosthecum C19] gi|328842321|gb|EGF91890.1| bacterial type II secretion system protein F domain protein [Asticcacaulis biprosthecum C19] Length = 343 Score = 81.3 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 59/148 (39%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 + + KR + FP+ALD+++ V AG+ + A+ + + P+ E ++ Sbjct: 165 ISNTASKRRQSIVAAFPDALDLLLICVEAGMSIETALHKVSQEIGGTSIPLAEEMSLLVA 224 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + + T + + G L AL +++ R+ + A Sbjct: 225 ELSYLPERRQAYEGFSKRTSHPGIKSVCTAMIQAEKYGTPLGTALRVMAKENRELRLSAA 284 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ A+ + +I + ++ Sbjct: 285 EKKAAALPAQLTVPMIVFFLPVLFVVIL 312 >gi|297171607|gb|ADI22603.1| type II secretory pathway, component PulF [uncultured verrucomicrobium HF0500_16O23] Length = 417 Score = 81.3 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 67/187 (35%), Gaps = 12/187 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQ 59 ++ ++R L D N + ++AG+P++ A+ + S +S +++ Sbjct: 64 VRRFGRRRKKPKLQDLANFTRQLANLLKAGMPLTGALNSMTSLDSDGIPKSVCAQLLADV 123 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G +LS S+ + P + + G++ E L L+ ++ K+ Sbjct: 124 REGRTLSVSMGKFPEIFPD-----MYLNMVKAGESSGSMVEVLKRLADHYERFAEVRQKI 178 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGI 176 + + +++G + + + P +M + L + + Sbjct: 179 ISALVYPV---FVMGLGFLLIFVFMSYILPKFMTIFKGMKVQLPLSTRILEGMSGFFENW 235 Query: 177 MVMRLMI 183 + L+I Sbjct: 236 WWLVLII 242 >gi|291537187|emb|CBL10299.1| hypothetical protein ROI_34750 [Roseburia intestinalis M50/1] Length = 245 Score = 80.9 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 25/192 (13%), Positives = 74/192 (38%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55 +R K + +F +A+ + ++ AG + A + + E ++ Sbjct: 54 NKKRDERAKKLMIEFRDAIQTVAAALLAGYSIEHAWKEAEREIMDLYGKEAMITKELIQM 113 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 L ++ E + + ++E+ F+ + + GG+ + + + + + + Sbjct: 114 NAEIKLNRNVEEILHDLAVRSGVEEIQSFAEIFGFAKRSGGDFPQIIRTTAARISAKIEV 173 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + +V + K I+ +PF + + S +++ L + G +++ A + Sbjct: 174 EREVDTVIAGKKLEGKIMSVMPFFILAYLNLASGEFIDPLYGNLAGVLVMSAALLVFVGA 233 Query: 176 IMVMRLMINFDV 187 + + R + + V Sbjct: 234 MAINRRISDIRV 245 >gi|315656391|ref|ZP_07909280.1| type II secretion system protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492950|gb|EFU82552.1| type II secretion system protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 295 Score = 80.9 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 74/175 (42%), Gaps = 3/175 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 +PN +D +V VRAGL + + + + ++ +R F G +L S+ + Sbjct: 116 KAWPNLVDDLVSGVRAGLSLGETLLEVAARAPKSLRVPFAHFAADYRAGGNLDASLKILK 175 Query: 74 RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + +Q G +L L +L +LR + + +V A A + Sbjct: 176 HELADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLARQSWTVTGARL 235 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + P+ + L+ + PG + + + P G M+L V A + ++M + +V Sbjct: 236 AAASPWIILALL-LSRPGTLE-MYSTPVGSMILLVGALVSALAYLMMLRLGRLEV 288 >gi|154482610|ref|ZP_02025058.1| hypothetical protein EUBVEN_00277 [Eubacterium ventriosum ATCC 27560] gi|149736510|gb|EDM52396.1| hypothetical protein EUBVEN_00277 [Eubacterium ventriosum ATCC 27560] Length = 238 Score = 80.9 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 25/187 (13%), Positives = 69/187 (36%), Gaps = 6/187 (3%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIETQH 60 + A+F + L + + G V + + + + SE R + Sbjct: 52 RAKAEFEHQYKEMLVALKDGIVTGYSVENGLKESYREMVNIYGYDGLICSELRLMTSRLK 111 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L + L+ F S+ + GGN++ + + + ++++K ++ Sbjct: 112 LNTPIEIVFKDFAERTDLESAHMFYNTFSIAQKSGGNMNNVIKRVIENIVLKESVKEEIN 171 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + K I+ +P + + SPG+++++ G++++ V L+ + Sbjct: 172 VAINDKKLEQRIMTVIPLLLIGYISMASPGFLDIMYKSIMGNIVMTVCLIVYLLAYLWSE 231 Query: 181 LMINFDV 187 ++ + Sbjct: 232 KIVKVSI 238 >gi|289706420|ref|ZP_06502778.1| type II secretion system F domain protein [Micrococcus luteus SK58] gi|289556915|gb|EFD50248.1| type II secretion system F domain protein [Micrococcus luteus SK58] Length = 285 Score = 80.9 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 69/183 (37%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R+ + +P+A+D ++RAGL + +A+ + + +R F+ Sbjct: 94 LSWQARRRSTALRELWPDAIDHARSAIRAGLTLPEALIQLGETGPEGLREPFQHFARDYR 153 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKV 119 G +++ R+ M + + + G ++ L LS LR ++A++ Sbjct: 154 AGARFVDALDRLKARMADPVADRLVVSLRLTREVGGADIGRLLQTLSEFLRQDARIRAEL 213 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +A +A + P+ V L+ G +L ++ VM Sbjct: 214 EARQSWTVNAARLAVCAPWLVLLLLGT--QPAAVAAYRSAAGGAVLLAGMVASVVCYRVM 271 Query: 180 RLM 182 + Sbjct: 272 LRI 274 >gi|160900921|ref|YP_001566503.1| type II secretion system protein [Delftia acidovorans SPH-1] gi|160366505|gb|ABX38118.1| type II secretion system protein [Delftia acidovorans SPH-1] Length = 405 Score = 80.9 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 58/185 (31%), Gaps = 11/185 (5%) Query: 1 MKHLIKKRT----AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRR 54 + IKKR K D + ++AG+P+ A ++ ++ V Sbjct: 48 LPSKIKKRRTRGGKKIKPKDIALFTRQMATMMKAGVPLLQAFDIVGRGNTNPSVTRLLAD 107 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 + G SL+ + + + + G L L L+ + + Sbjct: 108 IRSDVETGTSLNAAYRKHPL-----YFDSLYCNLVEAGEAAGILEALLDRLATYMEKTEA 162 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 +K+K+++ M + + + + V + D L + + + + Sbjct: 163 IKSKIKSALMYPISVVVVAFIVVTIIMLFVIPAFKDVFSSFGADLPAPTLFVMGVSDIFV 222 Query: 175 GIMVM 179 + Sbjct: 223 QWWWV 227 Score = 35.9 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 13/131 (9%), Positives = 41/131 (31%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ +A+ + G + + ++ + G SL+ +++ Sbjct: 275 WTRTLSTMFAAGVPLVEALDSVGGASGNAIYANATEKIQQEVSTGTSLTVAMTNA----- 329 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G++ L + + + + ME ++ + Sbjct: 330 -NVFPSMVLQMCAIGEESGSIDHMLGKAADFYEEEVDDMVAGLSSLMEPIIIVFLGTLIG 388 Query: 138 FCVSTLVYFTS 148 V ++ Sbjct: 389 GIVVSMYLPIF 399 >gi|225872758|ref|YP_002754215.1| type II secretion system protein [Acidobacterium capsulatum ATCC 51196] gi|225793390|gb|ACO33480.1| type II secretion system protein [Acidobacterium capsulatum ATCC 51196] Length = 299 Score = 80.9 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 67/157 (42%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ +K R + P+A+D++V V AGL + A+ + + S + EF ++ Sbjct: 136 LERKVKGRRHRISRSMPDAIDLLVICVDAGLGLDQAMLRVGQELAVSHPEINEEFLQINR 195 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 Q G ++ L E+ F +++ + G ++ AL S +R ++ A Sbjct: 196 EQRAGRPRVDAWKGFAERTRLPEIQNFVSMLVQTERFGTPITRALNTFSDSMRLKRKQIA 255 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + +A K ++ + C+ ++ P ++ + Sbjct: 256 EEKAAKTTVKMLFPLVLFIFPCIFIVL--LGPAFITI 290 >gi|254486075|ref|ZP_05099280.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. GAI101] gi|214042944|gb|EEB83582.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. GAI101] Length = 308 Score = 80.9 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 67/149 (44%), Gaps = 3/149 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + ++KR + FP+ALD+++ V AG + ++ + + S + EF V Sbjct: 149 VTKRVEKRKEEITRGFPDALDMMLVCVEAGQSLDQSIVRVAKELHASYPALAEEFEVVAY 208 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G ++ M +Q+VS F TV+ + G ++S+AL + +RD++ M+A Sbjct: 209 EMKAGKDKVGVLTDMGDRCGVQDVSSFVTVLCQSAAFGTSISDALRVYAEEMRDKRVMRA 268 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF 146 + A + K + + + ++ Sbjct: 269 EEAANKLPTKMTLATMMLTVPPLLIILVA 297 >gi|220913386|ref|YP_002488695.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] gi|219860264|gb|ACL40606.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] Length = 291 Score = 80.9 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 1/156 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ +KR + PNALD ++ SV+AGL A+ P+ E R ++ Sbjct: 135 LRNRAQKRREAIRLELPNALDQMLISVQAGLGFETAMGRAGENGRGPLAEELIRTLQDIQ 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S E+ + + + V F + G ++ L ++ +R ++ A+ Sbjct: 195 VGRSRKEAYLALSERVDVPSVRTFVRAVVQADAYGIAIANVLKTQAKDMRIKRRQLAEEH 254 Query: 121 ALSMEAKA-SAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A+ M K I LP L+ M+V Sbjct: 255 AMKMPVKMLFPLIFFILPTLFIVLLGPAVLQIMSVF 290 >gi|85373127|ref|YP_457189.1| hypothetical protein ELI_01500 [Erythrobacter litoralis HTCC2594] gi|84786210|gb|ABC62392.1| hypothetical protein ELI_01500 [Erythrobacter litoralis HTCC2594] Length = 331 Score = 80.9 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 60/148 (40%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +K+ KRT P+ALD++V AGL V A + + + + EF Sbjct: 171 LKNKAAKRTDAIRKGLPDALDLLVICAEAGLTVDAAFNRVAKELGRAYPELGDEFALTAI 230 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + + L+ V T + + G L+ AL LS R+ + M+A Sbjct: 231 ELSFLTERKQAFDNLAYRVDLEAVKGVVTTMVQTERYGTPLASALRVLSAEFRNERMMRA 290 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A + A + +I + + ++ Sbjct: 291 EEKAARLPAIMTVPLILFILPVLFIVIL 318 >gi|124265701|ref|YP_001019705.1| pilus tip-associated protein [Methylibium petroleiphilum PM1] gi|124258476|gb|ABM93470.1| Pilus tip-associated protein [Methylibium petroleiphilum PM1] Length = 408 Score = 80.9 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 23/184 (12%), Positives = 54/184 (29%), Gaps = 10/184 (5%) Query: 1 MKHLIKKRT---AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRV 55 + + K+R D I +RAG+P+ + ++ ++ V + Sbjct: 52 VNKVKKRRMSGGKSIKPKDIAIFTRQIATMMRAGVPLLQSFDIVARGSTNPRVTKLLTDI 111 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 G SLS + + + + G L L L+ + Sbjct: 112 RSDIETGTSLSSAFRKHPL-----YFDALYCNLVEAGEAAGILETLLERLATYQEKTLEI 166 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K K+++ + A + + + V D L ++ + + + Sbjct: 167 KRKIKSALIYPVAVLVVAFVVVAVIMIFVIPAFKEVFTSFGADLPAPTLFVMSMSEIFVS 226 Query: 176 IMVM 179 + Sbjct: 227 YWWL 230 Score = 37.8 bits (86), Expect = 0.69, Method: Composition-based stats. Identities = 17/137 (12%), Positives = 41/137 (29%), Gaps = 5/137 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 F + AG+P+ +A+ + G S + V +E T+ + +S + Sbjct: 271 FKSAVARWTRTLATMFAAGVPLVEALDSVGGASGNAVFAE-----ATEQIQKDVSTGTAL 325 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 ++ + G L L+ + + K + +E Sbjct: 326 TTSMQATGIFPVMVLQMAAIGEESGALDHMLSKAAEFYEAEVDEAVKGLSSLLEPIIIVV 385 Query: 132 IIGSLPFCVSTLVYFTS 148 + + V ++ Sbjct: 386 LGTIIGGIVVSMYLPIF 402 >gi|254473723|ref|ZP_05087118.1| type II secretion system protein [Pseudovibrio sp. JE062] gi|211957109|gb|EEA92314.1| type II secretion system protein [Pseudovibrio sp. JE062] Length = 324 Score = 80.9 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 21/149 (14%), Positives = 55/149 (36%), Gaps = 3/149 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 +++ + KR +P+A+D+++ V +G+ + A + + + E Sbjct: 166 VQNKVMKRQESIRLAWPDAMDLMLICVESGMSIEAAFKKVAEEVGPQSTALAEELILANA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + L V +S + G + AL LS R + +A Sbjct: 226 ELSYLDERRKAYQNLAERTGLDGVKNVVVALSQAEKYGTPIGYALRVLSEESRQERMQEA 285 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF 146 + +A ++ K + ++ + ++ Sbjct: 286 ERKAAALPPKLTVPMMLFFLPVLFIVLIA 314 >gi|261379321|ref|ZP_05983894.1| 3-isopropylmalate dehydrogenase [Neisseria subflava NJ9703] gi|284797758|gb|EFC53105.1| 3-isopropylmalate dehydrogenase [Neisseria subflava NJ9703] Length = 413 Score = 80.9 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 63/187 (33%), Gaps = 7/187 (3%) Query: 1 MKHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIET 58 + + R + +D + ++AGLP+ A ++ S+ + +V Sbjct: 59 ISKVKTARKRRITQEDITVFTRQLATMMKAGLPLMQAFEIVARGHSNPSMTEMLMQVRSD 118 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G +L +S S+ + F + + GG L L L+ + +K K Sbjct: 119 VEQGSALGKSFSKYPK-----YFDRFYCNLVSAGESGGVLESLLDKLAVYKEKTQAIKKK 173 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 V+ A + +L F + V + + L + + + + Sbjct: 174 VKTALTYPIAIIVVAIALIFIMMMFVLPAFKEVYANMGAELPSLTQLVMNLSDLFVDYGW 233 Query: 179 MRLMINF 185 + +++ Sbjct: 234 IMIILLI 240 >gi|253998298|ref|YP_003050361.1| type II secretion system protein [Methylovorus sp. SIP3-4] gi|313200371|ref|YP_004039029.1| type II secretion system protein [Methylovorus sp. MP688] gi|253984977|gb|ACT49834.1| type II secretion system protein [Methylovorus sp. SIP3-4] gi|312439687|gb|ADQ83793.1| type II secretion system protein [Methylovorus sp. MP688] Length = 403 Score = 80.9 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 20/167 (11%), Positives = 50/167 (29%), Gaps = 6/167 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71 D + ++AG+P+ A ++ ++ V + G SLS++ + Sbjct: 63 EKDVTLFTRQLATMMKAGVPLLQAFEIVGKGHNNPAVSKLLGDIKSDVETGSSLSQAFRK 122 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + G L L L+ +K+K+++ + Sbjct: 123 YPL-----YFDALYCNLVGAGEQAGILDSLLDRLATYKEKILAIKSKIKSALFYPVSIIV 177 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + + V + D L+ +A + + Sbjct: 178 VAFIITAVIMIFVIPAFKELFSSFGADLPAPTLIVMAISDFFVEYWW 224 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 19/142 (13%), Positives = 45/142 (31%), Gaps = 11/142 (7%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLS 66 R A + AG+P+ +A+ + G S + V E +++ G SL+ Sbjct: 266 RKATIAR----FARTLSTMFAAGVPLVEALDSVAGASGNRVYYEATKQIQSEISTGTSLT 321 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + + + + G L L+ ++ + + + ME Sbjct: 322 VAMQNV------EVFPNMVLQMVAIGEESGALDSMLSKVADFYEAEVDDAVEALSSLMEP 375 Query: 127 KASAWIIGSLPFCVSTLVYFTS 148 + + V + Sbjct: 376 IIMVVLGTLIGGLVIAMYLPIF 397 >gi|167840869|ref|ZP_02467553.1| hypothetical protein Bpse38_29619 [Burkholderia thailandensis MSMB43] Length = 279 Score = 80.9 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 73/157 (46%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + I+ R K ++DFP+ALD++ V AGL + A+ + + S V E ++ Sbjct: 114 LSRHIRLRQRKIIEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPIVADELGLMLL 173 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + ++V F ++ + G ++ +L LS LR ++ M+A Sbjct: 174 EIRSGFAKDAALRNLALRTGAEDVDAFCAMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 233 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + +A + K +I + + T++ P ++++ Sbjct: 234 EERAAKIALKLLFPLIFCIFPALLTVL--LGPAFIHI 268 >gi|320008843|gb|ADW03693.1| Type II secretion system F domain protein [Streptomyces flavogriseus ATCC 33331] Length = 295 Score = 80.9 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 58/141 (41%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++KR P+ LD++ V AGL A+ + + P E R + +G+ Sbjct: 137 AVRKRRDDIDRTLPDFLDVLAVVVSAGLGFRQALDRVAEKYQGPWSDELRITLRQMDMGV 196 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S ++ + R ++V+ F T + +LG + + L ++ +R A+ +A Sbjct: 197 SRRQAFDELRRRNDSEQVAMFVTALQQGEELGAPIVDTLIAIANDMRRTDAQNARRKAAK 256 Query: 124 MEAKASAWIIGSLPFCVSTLV 144 KA+ + + L+ Sbjct: 257 AVPKATLMVTTFMIPATMILM 277 >gi|111220777|ref|YP_711571.1| hypothetical protein FRAAL1320 [Frankia alni ACN14a] gi|111148309|emb|CAJ59981.1| conserved hypothetical protein; putative membrane protein [Frankia alni ACN14a] Length = 357 Score = 80.9 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 70/184 (38%), Gaps = 3/184 (1%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 R + +P+ +D + +VRAG+ + + +A + + +R F R E Sbjct: 96 RRRHGRIHDLRELWPDVVDNLASAVRAGMSLPEGLAAVGVRGPVQLRPAFTRFGEDYSAT 155 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQA 121 S S + R+ + + + + G +L L LS LR+ +A+++ Sbjct: 156 GSFSTCLDRLADELADPVADRIIESLRMAREVGGTDLGRLLRTLSTFLREDARTRAELET 215 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 +A + + P+ V L+ + P G ++L V + ++M+ Sbjct: 216 RQGWTVNAARLALAAPWIVLLLLATRGQNVQA--YDSPTGVLVLVVGGGVSALAYLLMKR 273 Query: 182 MINF 185 + Sbjct: 274 IGRL 277 >gi|218887822|ref|YP_002437143.1| type II secretion system protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758776|gb|ACL09675.1| type II secretion system protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 326 Score = 80.9 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 69/158 (43%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + IK R ++ P+ALD++V V AG+ + A + + + + + E VI Sbjct: 163 LSRRIKARRLDIINSLPDALDLLVVCVEAGMGLDQAFSRVAREMAATNPVLAEELNLVIL 222 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S +E++ + + L++V+ T+I G ++S L S +R + +A Sbjct: 223 ELRAGKSRAEALKNLAARVALEDVNSLVTLIVQADAFGTSISSTLRVYSDTMRTTRFQRA 282 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + A M K ++ + + V P ++ ++ Sbjct: 283 EEIAAKMPVKLLFPLVFCILPALF--VTIMGPAFIKLM 318 >gi|291540421|emb|CBL13532.1| hypothetical protein RO1_32050 [Roseburia intestinalis XB6B4] Length = 245 Score = 80.9 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 25/192 (13%), Positives = 74/192 (38%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55 +R K + +F +A+ + ++ AG + A + + E ++ Sbjct: 54 NKKRDERAKKLMIEFRDAIQAVAAALLAGYSIEHAWKEAEREIMDLYGKEAMITKELIQM 113 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 L ++ E + + ++E+ F+ + + GG+ + + + + + + Sbjct: 114 NAEIKLNRNVEEILHDLAVRSGVEEIQSFAEIFGFAKRSGGDFPQIIRTTAARISAKIEV 173 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + +V + K I+ +PF + + S +++ L + G +++ A + Sbjct: 174 EREVDTVIAGKKLEGKIMSVMPFFILAYLNLASGEFIDPLYGNLAGVLVMSAALLVFVGA 233 Query: 176 IMVMRLMINFDV 187 + + R + + V Sbjct: 234 MAINRRISDIRV 245 >gi|86159245|ref|YP_466030.1| type II secretion system protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85775756|gb|ABC82593.1| type II secretion system protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 306 Score = 80.9 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 66/165 (40%), Gaps = 4/165 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ ++ R + P+ALD++V V AGL + A+ + + + + E R V Sbjct: 140 LRARVQARQTQLDRSLPDALDLLVTCVEAGLGLDSALQRVSDEVALAHPLLSKELRLVFL 199 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G++ + RM E+ S ++ G ++ AL + +R R+ +A Sbjct: 200 EVKAGIARISAFRRMAERTGAPELRSLSATLAQTELFGTSVGAALRIQAEGIRIRRMHRA 259 Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + +A + K S ++ LP + ++ L G Sbjct: 260 EEKAAYVSVKMSLPLVLCILPCVFAVVLGPAVVNMAERLFPLLGG 304 >gi|255658710|ref|ZP_05404119.1| putative type II secretion system protein [Mitsuokella multacida DSM 20544] gi|260849099|gb|EEX69106.1| putative type II secretion system protein [Mitsuokella multacida DSM 20544] Length = 307 Score = 80.9 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 66/146 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R + P LD++ SV+AGL A++ I + P E RR+ + Sbjct: 152 LNTTIQRRQKQIEHQLPEVLDLLCVSVQAGLSFDAALSKITARMKGPFIDECRRMQDDIR 211 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ ++ M L++VS F T I +LG ++ + L N + +R+R+ K Q Sbjct: 212 MGVVRRTAMRSMADRCGLEDVSLFMTSIIQAERLGTSMGKTLKNQADNIRERRRQYVKAQ 271 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146 A+ K ++ + + + Sbjct: 272 AMKAPVKIVFPLVLFIFPAIFVVTLV 297 >gi|222084474|ref|YP_002543003.1| pilus assembly protein [Agrobacterium radiobacter K84] gi|221721922|gb|ACM25078.1| pilus assembly protein [Agrobacterium radiobacter K84] Length = 325 Score = 80.9 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 63/158 (39%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + + KR +P+ALD+++ V +G+ + + + + S + E Sbjct: 167 ISNRVTKRQKSIKRAWPDALDLMLICVESGISIEAGMRRVSEEMAEQSPALAEEMVLTTA 226 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + ++ V + + + G +S+AL +++ RD + +A Sbjct: 227 ELSFLQDRRTAFDNLAARTQIEIVKSVTQALIQAERYGTPVSQALRVMAQEGRDERMNEA 286 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A ++ K + +I + ++ P + V+ Sbjct: 287 EKKAAALPPKLTVPMIVFFLPVLMAVI--LGPAIIQVM 322 >gi|296134880|ref|YP_003642122.1| Type II secretion system F domain protein [Thiomonas intermedia K12] gi|295795002|gb|ADG29792.1| Type II secretion system F domain protein [Thiomonas intermedia K12] Length = 406 Score = 80.5 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 21/184 (11%), Positives = 54/184 (29%), Gaps = 10/184 (5%) Query: 1 MKHLIKKR----TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRV 55 + + K+R A D + ++AG+P+ + ++ + + Sbjct: 49 VTKVKKRRLTSGKAIKAKDISTFTRQMSTMIKAGVPLLQSFDIVGRGHPNPNMARLIMDI 108 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 G SLS + + + + + G L L L+ + Sbjct: 109 RGDVETGTSLSNAFRKHPK-----YFDALYCNLVEAGETAGMLELVLDRLATYQEKSLAI 163 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 ++K+++ A + + + V + L+ VA + + Sbjct: 164 RSKIKSALTYPIAVMVVAFVVVSIIMLFVVPVFTDVFSQFGASLPAPTLMVVAMSNFFVH 223 Query: 176 IMVM 179 + Sbjct: 224 YWYI 227 Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 18/135 (13%), Positives = 45/135 (33%), Gaps = 7/135 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMV 73 + AG+P+ +A+ + G + + V ++ + G SL+ S+ Sbjct: 271 ALARWTRTLATMFGAGVPLVEALDAVGGAAGNIVYLRATEKIQQDVSTGTSLTTSMQTQG 330 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + P ++ + G+L L+ + I + K + +E ++ Sbjct: 331 VFPP------LVIQLTSIGEESGSLDSMLSKAADIYEAEVDELVKNLSALLEPIIIVFLG 384 Query: 134 GSLPFCVSTLVYFTS 148 + V + Sbjct: 385 VIIGGLVVAMYLPIF 399 >gi|302877538|ref|YP_003846102.1| Type II secretion system F domain [Gallionella capsiferriformans ES-2] gi|302580327|gb|ADL54338.1| Type II secretion system F domain [Gallionella capsiferriformans ES-2] Length = 403 Score = 80.5 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 21/179 (11%), Positives = 50/179 (27%), Gaps = 6/179 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ 59 +K A D + ++AG+P+ A ++ + V + Sbjct: 51 IKRARSSAKAITQKDITLFTRQLATMLKAGVPLLQAFDIVGKGHHNPSVSRLLFSIKTDI 110 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SL ++ + + + G L L L+ +K+K+ Sbjct: 111 ETGSSLQQAFKKHPL-----YFDDLYCNLIGAGESAGILDSLLERLATYQEKILAIKSKI 165 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 ++ + + + + V + D L +A + + Sbjct: 166 KSALFYPVSIIVVAFIITAVIMIFVIPAFKELFSSFGADLPAPTLFIMAISDFFVSYWW 224 Score = 40.9 bits (94), Expect = 0.090, Method: Composition-based stats. Identities = 15/129 (11%), Positives = 40/129 (31%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + AG+P+ +A + G + + V + + G SL+ ++ + Sbjct: 275 RTLSTMFAAGVPLVEAFNSVAGAAGNAVYFDATKSIQREVSTGNSLTVAMQN------TE 328 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + G+L L+ ++ + + + ME + + Sbjct: 329 VFPSMVIQMVSIGEEAGSLDAMLSKVADFYEAEVDDAVEALSSLMEPIIMVVLGTLIGGM 388 Query: 140 VSTLVYFTS 148 V + Sbjct: 389 VVAMYLPIF 397 >gi|15679697|ref|NP_276815.1| hypothetical protein MTH1703 [Methanothermobacter thermautotrophicus str. Delta H] gi|2622834|gb|AAB86175.1| unknown [Methanothermobacter thermautotrophicus str. Delta H] Length = 359 Score = 80.5 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 74/178 (41%), Gaps = 2/178 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR+++ + P AL + +++GL + D++ + + EF R +E G + Sbjct: 178 KRSSEASRELPFALRQMATELKSGLGLHDSMRSVAMSGYGALSEEFARTLEEIKYGETTE 237 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ M + + I+ GG+LS+ L ++ + MK K + + + Sbjct: 238 NALIEMSNRIESDGLKRAVYQITRTLNSGGDLSKTLNVIADDIAYEMRMKLKDYSQKLNS 297 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI--MVMRLM 182 ++ ++ V LV + + + P +++ + ML+G +++ + Sbjct: 298 FTMIYMFLAILGPVIFLVMLLAAATVMGSVLPPIAIIMIYLFLFPMLVGFMAFMIKRL 355 >gi|307332439|ref|ZP_07611503.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] gi|306881908|gb|EFN13030.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] Length = 295 Score = 80.5 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 57/143 (39%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +++R P+ LD++ V AGL A+ + + P E R + +G+ Sbjct: 137 AVRERKDAIERTLPDFLDVLAVVVSAGLSFRQALDRVAEKYEGPWADELRITLRQMDMGV 196 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S + + + ++V+ F T + +LG + E L ++ +R A+ +A Sbjct: 197 SRRHAFEELRKRNDSEQVAQFVTALQQGEELGAPIVETLIAIANDMRRTDAQNARRRAAR 256 Query: 124 MEAKASAWIIGSLPFCVSTLVYF 146 KA+ I + L+ Sbjct: 257 AVPKATMVITTFMVPGTMVLLVA 279 >gi|238917898|ref|YP_002931415.1| hypothetical protein EUBELI_01985 [Eubacterium eligens ATCC 27750] gi|238873258|gb|ACR72968.1| Hypothetical protein EUBELI_01985 [Eubacterium eligens ATCC 27750] Length = 235 Score = 80.5 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 22/193 (11%), Positives = 84/193 (43%), Gaps = 7/193 (3%) Query: 2 KHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ------SSDPVRSEFRR 54 + + + + + F + + + ++ G + +A + + + S + +F+ Sbjct: 43 RRIAEAKKKRILTKQFKDGIMAVSFALNVGYSIENAFSQAIDELILLYGSEADIVMKFKN 102 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 ++ + +L + ++ + ++++ +F+ V + GG+L + N + I++ + Sbjct: 103 IVVRINQNENLEDILNDFAKECKIEDIMYFAEVFRYAKRSGGDLISIIRNTADIIQQKTE 162 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + +V+ + + ++ ++P + + T+ ++ L + G +++ LI Sbjct: 163 VATEVETIVSGKRMEQKVMSAIPALIILYLKVTAREFVEPLYGNLSGVLIMTCCLGVYLI 222 Query: 175 GIMVMRLMINFDV 187 + + ++N +V Sbjct: 223 SNVWSKRIVNIEV 235 >gi|284031222|ref|YP_003381153.1| type II secretion system protein [Kribbella flavida DSM 17836] gi|283810515|gb|ADB32354.1| type II secretion system protein [Kribbella flavida DSM 17836] Length = 301 Score = 80.5 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 71/183 (38%), Gaps = 2/183 (1%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R + LD + + ++ + + A+ ++ ++ +++ + L Sbjct: 94 ERRAIERLDALATWTEALRDTIAGAVGLEQAIPATAVNAAPAIKPGLNLLVDRLRIREPL 153 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ R + + + G L E L+ L+ R+ +++ KV A Sbjct: 154 PSALMRFADDLDDPSADLIVAALVLNARLRGPGLREVLSALADSAREELDVRRKVAAERR 213 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + S ++ ++ V+ + +P Y+ G +L + A +G++ +R + Sbjct: 214 STRRSVQVVVAITLLVAAALVLFNPAYVEP-YTSFVGQFVLFLVIALYAVGLVWLRKLAK 272 Query: 185 FDV 187 +V Sbjct: 273 IEV 275 >gi|89095464|ref|ZP_01168374.1| type II secretion system protein [Oceanospirillum sp. MED92] gi|89080267|gb|EAR59529.1| type II secretion system protein [Oceanospirillum sp. MED92] Length = 406 Score = 80.5 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 18/170 (10%), Positives = 52/170 (30%), Gaps = 6/170 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 D + +++G+P+ + + G ++ + + G+ LS ++++ Sbjct: 68 DIAFFTRQMATMLKSGVPLLQGLEITAGGVDKQKLKDIIYEIKNDVNGGIDLSNALAKHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G L L ++ +++KAK++ A + Sbjct: 128 DH-----FDDLYCNLVSAGEQSGALETMLDRIATYKEKLESLKAKIKKALTYPTAVVIVG 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + V D L + + + L+ Sbjct: 183 IVVSAILLVKVVPQFESVFQNFGADLPAFTLFVIGLSETAQKWWWIALIA 232 Score = 34.7 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 13/136 (9%), Positives = 36/136 (26%), Gaps = 5/136 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + AG+P+ +A+ G S + + + +S S Sbjct: 270 NASIARFARTLATTFAAGVPLVNALESAAGASGNALYR-----DAIIQIKNGVSTGQSLK 324 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G+L L ++ + + + +E + Sbjct: 325 DAVTMTGIFPNMTVQMIAIGEEAGSLEMMLEKVADFYEELVDNAVDNLSSLLEPLIMVVL 384 Query: 133 IGSLPFCVSTLVYFTS 148 + V + Sbjct: 385 GVLVGGLVIAMYLPIF 400 >gi|326388860|ref|ZP_08210442.1| type II secretion system protein [Novosphingobium nitrogenifigens DSM 19370] gi|326206460|gb|EGD57295.1| type II secretion system protein [Novosphingobium nitrogenifigens DSM 19370] Length = 339 Score = 80.5 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 61/148 (41%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + +LI KRT P+ALD++V AGL + A + + + + + EF Sbjct: 176 VANLIGKRTNAIRKGLPDALDLLVICAEAGLTIDAAFSRVARELGRAYPELGDEFSLTAI 235 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + L+ + T + + G L+ AL LS R+ + M+A Sbjct: 236 ELSFLTERRSAFENLAYRVNLESMRGVVTTMIQTERYGTPLASALRVLSAEFRNERMMRA 295 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A + A + +I + + ++ Sbjct: 296 EEKAARLPAIMTIPLILFILPTLFVVIL 323 >gi|309778766|ref|ZP_07673539.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA] gi|308922474|gb|EFP68098.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA] Length = 308 Score = 80.5 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 43/184 (23%), Positives = 84/184 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + +K + L P LD +VR + G V A + P+R+ + + Q Sbjct: 123 IWNRTRKINERLLAQLPGFLDGVVRLMSIGSAVPAAFQAASANTEQPLRNCLTAITQMQR 182 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L ++ + + + E+ S+V+ + + GG + + +RDR+ + ++ Sbjct: 183 AGKDLDAAVLTVGQQYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQRELF 242 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + SAWIIG LP V ++ + Y+ + DP G L+ A ++G +++ Sbjct: 243 ALSAETRLSAWIIGLLPVVVGGVIIMFNAAYIMSMWRDPFGKTLILTAFGMEVLGAVMLA 302 Query: 181 LMIN 184 + Sbjct: 303 RLAK 306 >gi|73542645|ref|YP_297165.1| type II secretion system protein [Ralstonia eutropha JMP134] gi|72120058|gb|AAZ62321.1| type II secretion system protein [Ralstonia eutropha JMP134] Length = 424 Score = 80.5 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 21/168 (12%), Positives = 56/168 (33%), Gaps = 6/168 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71 D + ++AG+P+ ++ +I ++ + G S++ + R Sbjct: 84 EKDIAYFTRQLSTMLKAGIPLLQSIDIIARGHANPNFTQLLSDIRFDIESGSSMAAAFRR 143 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 R + + GG L L LS + +K+++++ + A Sbjct: 144 HPR-----YFDTLYCNLIDAGEQGGILDSLLERLSLYMEKTIALKSQIKSAMIYPIAVLT 198 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + ++ + V G + + L+ +A + + + Sbjct: 199 VAFAVTVILMLFVIPAFKGVFSSFGANLPAPTLVVIAISDFFVAYWYI 246 >gi|13474665|ref|NP_106234.1| hypothetical protein mlr5604 [Mesorhizobium loti MAFF303099] gi|14025420|dbj|BAB52020.1| mlr5604 [Mesorhizobium loti MAFF303099] Length = 339 Score = 80.5 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 58/148 (39%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + + KR +P+ALD+++ V +G+ V A+ + + + EF Sbjct: 169 VNNRATKRKQSIQMAWPDALDLMLICVESGMSVEAALRKVADEIGAQSVALAEEFILTNA 228 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + L+ V S + + G ++ AL L+ RD++ A Sbjct: 229 ELSYLQERKQAYENLANRTGLESVKSVSQALVQAERYGTPVAHALRVLAAESRDQRMNAA 288 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 289 EKKAAALPPKLTVPMILFFLPVLFAIIL 316 >gi|300690359|ref|YP_003751354.1| type IV pilus assembly transmembrane protein [Ralstonia solanacearum PSI07] gi|299077419|emb|CBJ50045.1| type IV pilus assembly transmembrane protein [Ralstonia solanacearum PSI07] Length = 421 Score = 80.5 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 23/180 (12%), Positives = 56/180 (31%), Gaps = 7/180 (3%) Query: 2 KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ 59 K R K D + ++AG+P+ +V +I ++ + Sbjct: 69 KRRRAARGKKITPKDIAYFTRQLSTMLKAGVPLLQSVDIIARGHANPNFTQLLTEIRVDI 128 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G S++++ R + + + GG L L LS + +KA++ Sbjct: 129 ESGSSMAQAFRRHPK-----YFDSLYCNLIDAGEQGGILDALLERLSLYMEKSIALKAQI 183 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ + + + + + V G L+ + + + + Sbjct: 184 KSAMIYPISVLTVAFLVTVVLMIFVVPAFKGVFASFGATLPAPTLVVMGISDFFVQWWYI 243 >gi|254504440|ref|ZP_05116591.1| Bacterial type II secretion system protein F domain [Labrenzia alexandrii DFL-11] gi|222440511|gb|EEE47190.1| Bacterial type II secretion system protein F domain [Labrenzia alexandrii DFL-11] Length = 324 Score = 80.5 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 4/159 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 +K+ I KR +P+ALD+++ V +G+ + A + + + E Sbjct: 166 LKNQIDKRKLGIQRAWPDALDLMLICVESGMSIEAAFQKVAEEIGAQSVELAEELSLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + + V + + G + A+ N++ R + A Sbjct: 226 ELSYLSERRMAYENLAKRTGVDGVKNVMMALIQAERYGTPVGTAIRNMADDTRAERMQFA 285 Query: 118 KVQALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A S+ K I+ LP ++ M Sbjct: 286 EQKAASLPPKLTVPMIMFFLPVLFFVILTPAVIQAMGAF 324 >gi|82703469|ref|YP_413035.1| type II secretion system protein [Nitrosospira multiformis ATCC 25196] gi|82411534|gb|ABB75643.1| type II secretion system protein [Nitrosospira multiformis ATCC 25196] Length = 313 Score = 80.5 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 68/166 (40%), Gaps = 4/166 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + L+ +R + + FP+A+D++ V AGL + A+ + + S + SE V Sbjct: 148 LGRLVLQRKRELFESFPDAIDLMTVCVEAGLGLDAAMVRVAEEMRLRSKALASELHLVSL 207 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +++ + ++E+ +++ + G +++ +L S LR + ++A Sbjct: 208 ELRAGRTREQALRNLAMRTGVEEIEALVSMLVQADRFGTSVAASLRVHSDTLRTTRRLRA 267 Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162 + A + I P + L+ VL+ G Sbjct: 268 EEAAAKIALKLLFPLIFFIFPSLLLVLMGPAFINIYRVLLPTLGGQ 313 >gi|88801096|ref|ZP_01116643.1| Type II secretory pathway, component PulF [Reinekea sp. MED297] gi|88776175|gb|EAR07403.1| Type II secretory pathway, component PulF [Reinekea sp. MED297] Length = 407 Score = 80.5 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 23/197 (11%), Positives = 62/197 (31%), Gaps = 14/197 (7%) Query: 1 MKHLIKKR--------TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF 52 +K L KKR +D + ++AG+P+ + ++ +P +E Sbjct: 47 VKKLQKKRADINLFGGKKVKTEDIAVFTRQMATMMKAGVPLMRSFEIVAEGLDNPKMAEL 106 Query: 53 RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112 ++ G + + + G L L ++ Sbjct: 107 VTSMKNNVAGGG----SFGSALRQHPKYFDDLYCSLIESGEQAGALETMLDRVAIYKEKS 162 Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP--RGHMLLGVAAA 170 + +K KV++ + + + V T + D +++ ++++ Sbjct: 163 EAVKKKVKSAMKYPATVLVVAAIVTIILLLKVVPTFAEMFSNFGADLPVPTQIVMNMSSS 222 Query: 171 FMLIGIMVMRLMINFDV 187 GI+ +++ + Sbjct: 223 LQENGIIWGSIILAIAI 239 Score = 37.8 bits (86), Expect = 0.75, Method: Composition-based stats. Identities = 16/128 (12%), Positives = 40/128 (31%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + + AG+P+ A+ G +S + E + + + S + Sbjct: 279 RTLSTTFAAGVPLVQALESAAG-ASGNIVYESAIMQVRNEVETGSELATS----MKDTEV 333 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + G L + L + I + + + + ME A++ + V Sbjct: 334 FPSMLVQMVSIGEQSGALDDMLGKAAIIYEEEVDNQVEGLTAMMEPMIMAFLGVVVGGLV 393 Query: 141 STLVYFTS 148 ++ Sbjct: 394 VSMYLPIF 401 >gi|74318387|ref|YP_316127.1| type IV pilus assembly protein PilC [Thiobacillus denitrificans ATCC 25259] gi|74057882|gb|AAZ98322.1| type IV pilus assembly protein PilC [Thiobacillus denitrificans ATCC 25259] Length = 407 Score = 80.5 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 21/171 (12%), Positives = 52/171 (30%), Gaps = 6/171 (3%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSE 67 D + ++AG+P+ + ++ S+ ++ + G SL++ Sbjct: 62 KRITEKDVALFTRQLATMMKAGVPLLQSFEIVARGHSNPSMQRLLMEIKADIEKGSSLTQ 121 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 S +R + + G L L L+ +K K+++ Sbjct: 122 SFARHPL-----YFDALFCNLVGAGEAAGILEAVLDRLAVYKEKILAIKGKIKSALFYPV 176 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + + + V + D G L+ +A + + Sbjct: 177 SIIVVAFVITAIIMIFVIPAFKELFSSFGTDLPGPTLVVMAISDFFVTWWW 227 Score = 39.3 bits (90), Expect = 0.23, Method: Composition-based stats. Identities = 17/131 (12%), Positives = 43/131 (32%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ +A+ + G S + V E +++ G +L+ ++ R Sbjct: 276 WTRTLSTMFAAGVPLVEALESVAGASGNQVFVEATQKIRGEVATGTALTVAMQNSGR--- 332 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + G+L L ++ + + + ME + + Sbjct: 333 ---FPNMVLQMAAIGEESGSLDAMLGKVADFYESEVDDAVEALSSLMEPLIMVVLGTLIG 389 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 390 GMVIAMYLPIF 400 >gi|91776494|ref|YP_546250.1| type II secretion system protein [Methylobacillus flagellatus KT] gi|91710481|gb|ABE50409.1| type II secretion system protein [Methylobacillus flagellatus KT] Length = 402 Score = 80.5 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 48/161 (29%), Gaps = 6/161 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + ++AG+P+ A ++ S+ V + G SLS++ + Sbjct: 68 FTRQLATMMKAGVPLLQAFDIVGKGHSNPAVSKLLGDIKADVETGSSLSQAFRKYPL--- 124 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G L L L+ +K K+++ + + + Sbjct: 125 --YFDNLFCNLVGAGEQAGILDSLLDRLATYKEKILAIKGKIKSALFYPISIIVVAFVIT 182 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + V + D ++ +A + + Sbjct: 183 AVIMIFVIPAFKELFSSFGADLPAPTVMVMAISDFFVDYWW 223 Score = 42.4 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 19/142 (13%), Positives = 42/142 (29%), Gaps = 11/142 (7%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLS 66 R A + AG+P+ +A+ + G S + V ++V G SL+ Sbjct: 265 RKATIAR----FSRTLSTMFAAGVPLVEALDSVAGASGNRVYHDATKKVQSEISTGASLT 320 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + + + G L L ++ + + + ME Sbjct: 321 VAMQN------TEVFPNMVLQMVAIGEESGALDSMLGKVADFYEGEVDDAVEALSSLMEP 374 Query: 127 KASAWIIGSLPFCVSTLVYFTS 148 + + V + Sbjct: 375 IIMVVLGTLIGGLVIAMYLPIF 396 >gi|304405043|ref|ZP_07386703.1| Type II secretion system F domain protein [Paenibacillus curdlanolyticus YK9] gi|304345922|gb|EFM11756.1| Type II secretion system F domain protein [Paenibacillus curdlanolyticus YK9] Length = 274 Score = 80.5 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 86/190 (45%), Gaps = 7/190 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA-------VAVIVGQSSDPVRSEFRRVI 56 L++KR + F AL + S+ AG V +A + ++ + + EF + Sbjct: 84 LLEKRRVRLQLQFKEALYSVTSSLAAGRSVENAFIAAEADLQLLYPGGTADIVREFAMIR 143 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 G +L +S+ L+E++ F V S + GG+L + + S+++ ++ +++ Sbjct: 144 HRMENGETLESGLSQFANRAQLEEITQFVDVFSTCKRTGGDLVDVIRRTSQVIGEKLDIQ 203 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 ++ + + + + I+ ++PF + +P Y L + P G++LL + + Sbjct: 204 QEIAVMLAQKRFESRILTAVPFVFIAGLNLAAPDYTGPLYSSPLGYVLLTLLLLGFVGCG 263 Query: 177 MVMRLMINFD 186 ++R ++ Sbjct: 264 ALIRKLMMIR 273 >gi|256824883|ref|YP_003148843.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547] gi|256688276|gb|ACV06078.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547] Length = 286 Score = 80.5 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 66/173 (38%), Gaps = 3/173 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D +P+ +D + VRAG+ + +A+A + + + +R F S+ + Sbjct: 108 DAWPDCVDHVASGVRAGMALPEALAQLAVRGPEELRPAFAGFAHDYRATGRFHVSLDALK 167 Query: 74 RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G +L L LS LR+ + +++++A +A + Sbjct: 168 ERLSDPVADRLVESLRIAREVGGSDLGVVLRTLSSFLREEAHTRSEMEARQSWTVNAARL 227 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + P+ V ++ N G ++L + + ++M + Sbjct: 228 GLAAPWIVLAMLATRGDSLAA--YNSTTGALVLVLGGLVSVGAYLLMMRLGRI 278 >gi|302391033|ref|YP_003826853.1| type II secretion system F domain protein [Acetohalobium arabaticum DSM 5501] gi|302203110|gb|ADL11788.1| Type II secretion system F domain protein [Acetohalobium arabaticum DSM 5501] Length = 306 Score = 80.5 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 74/155 (47%), Gaps = 2/155 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I +R K P+ LD++ SV AGL A+ +V + + P+ EF R+++ Sbjct: 148 LSKKISERQKKMQQALPDVLDLLTVSVEAGLGFDSALVRVVDKIAGPISEEFERLLQEIR 207 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G +++ + +++++ F T I +LG ++ + L S+ +R ++ +A+ Q Sbjct: 208 MGKPRRDAMRDLGERTNVEDLTNFITAIVQADKLGVSIGKVLRVQSKQIRQKRRQRAEAQ 267 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A+ K ++ + + ++ P + V+ Sbjct: 268 AMKAPIKMLLPLVFFIFPTLFIIL--LGPAAIKVM 300 >gi|304390832|ref|ZP_07372784.1| type II secretion system protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304325715|gb|EFL92961.1| type II secretion system protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 295 Score = 80.5 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 74/175 (42%), Gaps = 3/175 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 +PN +D +V VRAGL + + + + ++ +R F G +L S+ + Sbjct: 116 KAWPNLVDDLVSGVRAGLSLGETLLEVAARAPKSLRVPFAHFAADYRAGGNLDASLKILK 175 Query: 74 RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + +Q G +L L +L +LR + + +V A A + Sbjct: 176 HELADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLARQSWTVTGARL 235 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + P+ + L+ + PG + V + P G M+L V A + ++M + +V Sbjct: 236 AAASPWIILALL-LSRPGTLEV-YSTPVGSMILLVGALVSALAYLMMLRLGRLEV 288 >gi|257784835|ref|YP_003180052.1| type II secretion system protein [Atopobium parvulum DSM 20469] gi|257473342|gb|ACV51461.1| type II secretion system protein [Atopobium parvulum DSM 20469] Length = 272 Score = 80.5 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 27/174 (15%), Positives = 70/174 (40%), Gaps = 1/174 (0%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 + P+ I ++ +GL +S ++ + + V F G + E+I Sbjct: 96 EIAHMMPSIFRTIAVALGSGLTLSQSIEYVSKHTEGVVSESFCIADMQIKCGFPIEEAIE 155 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + V+ ++ + + + G L L + ++ ++ + + + + + SA Sbjct: 156 DLAERLDAPGVNLLASALVISHRTGSPLKNLLQKTAELVELQEKNQRLIATKTAQVRLSA 215 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 I+ LP + ++ SP + L P G + +A I ++++R ++ Sbjct: 216 RIVCLLPVVLLIILSLVSPDFQKGLF-TPSGVICTVIAMIMDCIALLIIRSIMK 268 >gi|240143494|ref|ZP_04742095.1| conserved hypothetical protein [Roseburia intestinalis L1-82] gi|257204528|gb|EEV02813.1| conserved hypothetical protein [Roseburia intestinalis L1-82] Length = 245 Score = 80.5 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 25/192 (13%), Positives = 74/192 (38%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55 +R K + +F +A+ + ++ AG + A + + E ++ Sbjct: 54 NKKRDERAKKLMIEFRDAIQAVAAALLAGYSIEHAWKEAEREIMDLYGKEAMITKELIQM 113 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 L ++ E + + ++E+ F+ + + GG+ + + + + + + Sbjct: 114 NAEIKLNRNVEEILHDLAVRSGVEEIQSFAEIFGFAKRSGGDFPQIIRTTAARISAKIEV 173 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + +V + K I+ +PF + + S +++ L + G +++ A + Sbjct: 174 EREVDTVIAGKKLEGKIMSVMPFFILAYLNLASREFIDPLYGNLAGVLVMSAALLVFVGA 233 Query: 176 IMVMRLMINFDV 187 + + R + + V Sbjct: 234 MAINRRISDIRV 245 >gi|85705157|ref|ZP_01036257.1| type II/IV secretion system protein, TadC subfamily protein [Roseovarius sp. 217] gi|85670479|gb|EAQ25340.1| type II/IV secretion system protein, TadC subfamily protein [Roseovarius sp. 217] Length = 325 Score = 80.5 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 69/158 (43%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + +KR + D FP++LD+++ + AG + ++ + + + EF V Sbjct: 162 ITKRQQKRQEEIQDGFPDSLDMMLVCIEAGQSMDQSIIRVASEMRASYPALAEEFEIVSL 221 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G ++ M +Q+++ F TV+ G ++ EAL + +RD++ M+A Sbjct: 222 QIKAGRDKPSVLNEMAERCGVQDITSFVTVMVQSQTFGTSIGEALRVYAAEMRDKRVMRA 281 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A + K + + + ++ P + ++ Sbjct: 282 EEKANKLPTKMTLATMMLTVPPLLIIL--VGPSVLGIM 317 >gi|209551764|ref|YP_002283681.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537520|gb|ACI57455.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 328 Score = 80.5 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 62/148 (41%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + + KR +P+ALD+++ V +G+ + A+ + + S P+ E Sbjct: 170 ISNRMGKRQHSIKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPPLAEEMVLTTA 229 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + ++ V + + + G +++AL L++ RD + +A Sbjct: 230 ELSFLPDRRVALENLATRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEA 289 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 290 EKKAAALPPKLTVPMILFFLPVLIAVIL 317 >gi|325678292|ref|ZP_08157920.1| type II secretion system protein F domain protein [Ruminococcus albus 8] gi|324110055|gb|EGC04243.1| type II secretion system protein F domain protein [Ruminococcus albus 8] Length = 303 Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 77/187 (41%), Gaps = 7/187 (3%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIETQH 60 KR F + LD + SV +G A + E +++ Q Sbjct: 118 KRRNDIRRQFMDLLDALAASVASGSNAIKAFEAAKEDLVLQYGEDSIIVQELTLILDGQK 177 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + +S S+ + ++E+ F+ V + + GG+ S+ + + IL + N++ +++ Sbjct: 178 NFIDISASLIDFGKRSGIKEIESFAQVFELSHRKGGDFSKVIRDSYEILYSKINIEMEIE 237 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + I+ ++PF + ++ SP + P G + + V ++I ++ R Sbjct: 238 TKIAATRNELNIMLAMPFILVGMMKSMSPDF-AYNFRTPTGALGITVGLVIVVISYLLGR 296 Query: 181 LMINFDV 187 + + +V Sbjct: 297 KITSIEV 303 >gi|242311994|ref|ZP_04811011.1| type II secretion system protein [Burkholderia pseudomallei 1106b] gi|254265316|ref|ZP_04956181.1| type II secretion system protein [Burkholderia pseudomallei 1710a] gi|242135233|gb|EES21636.1| type II secretion system protein [Burkholderia pseudomallei 1106b] gi|254216318|gb|EET05703.1| type II secretion system protein [Burkholderia pseudomallei 1710a] Length = 313 Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 4/165 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + I R ++DFP+ALD++ V AGL + A+ + + S V E ++ Sbjct: 148 LARRIAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLL 207 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + ++V FST++ + G ++ +L LS LR ++ M+A Sbjct: 208 EMRSGFTKETALRNLALRTGAEDVDAFSTMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 267 Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + +A + I P ++ L+ L+ G Sbjct: 268 EERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRTLLPTMAG 312 >gi|254441173|ref|ZP_05054666.1| Bacterial type II secretion system protein F domain [Octadecabacter antarcticus 307] gi|198251251|gb|EDY75566.1| Bacterial type II secretion system protein F domain [Octadecabacter antarcticus 307] Length = 326 Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 69/148 (46%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + +R + ++ FP++LD+++ V AG + ++ + + + E++ V Sbjct: 163 VGKRQAERQLEMINGFPDSLDMMLVCVEAGQSLDQSIIRVAHELKSGFPALAEEYQMVSH 222 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G ++ + M + ++S F TV+ Q G +++EAL S +RD++ M+A Sbjct: 223 EMKAGKDKTQVLRDMAERTGVADISSFVTVLIQSQQFGTSIAEALRVFSAEMRDKRVMRA 282 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + + + ++ Sbjct: 283 EEKANTLPTKMTLATMLLTVPPLLIILI 310 >gi|53723215|ref|YP_112200.1| hypothetical protein BPSS2198 [Burkholderia pseudomallei K96243] gi|76819357|ref|YP_336475.1| type II secretion system protein [Burkholderia pseudomallei 1710b] gi|126455503|ref|YP_001076997.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|167744183|ref|ZP_02416957.1| type II secretion system protein [Burkholderia pseudomallei 14] gi|167821382|ref|ZP_02453062.1| type II secretion system protein [Burkholderia pseudomallei 91] gi|167829724|ref|ZP_02461195.1| type II secretion system protein [Burkholderia pseudomallei 9] gi|167851191|ref|ZP_02476699.1| type II secretion system protein [Burkholderia pseudomallei B7210] gi|167899821|ref|ZP_02487222.1| type II secretion system protein [Burkholderia pseudomallei 7894] gi|167916485|ref|ZP_02503576.1| type II secretion system protein [Burkholderia pseudomallei 112] gi|167924342|ref|ZP_02511433.1| type II secretion system protein [Burkholderia pseudomallei BCC215] gi|217424204|ref|ZP_03455703.1| type II secretion system protein [Burkholderia pseudomallei 576] gi|226194113|ref|ZP_03789713.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|237510430|ref|ZP_04523145.1| type II secretion system protein [Burkholderia pseudomallei MSHR346] gi|254182575|ref|ZP_04889169.1| type II secretion system protein [Burkholderia pseudomallei 1655] gi|254187127|ref|ZP_04893642.1| type II secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|254192523|ref|ZP_04898962.1| type II secretion system protein [Burkholderia pseudomallei S13] gi|254296491|ref|ZP_04963947.1| type II secretion system protein [Burkholderia pseudomallei 406e] gi|52213629|emb|CAH39683.1| putative membrane protein [Burkholderia pseudomallei K96243] gi|76583830|gb|ABA53304.1| Bacterial type II secretion system protein, probably involved in Flp pilus synthesis [Burkholderia pseudomallei 1710b] gi|126229271|gb|ABN92684.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|157806389|gb|EDO83559.1| type II secretion system protein [Burkholderia pseudomallei 406e] gi|157934810|gb|EDO90480.1| type II secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|169649281|gb|EDS81974.1| type II secretion system protein [Burkholderia pseudomallei S13] gi|184213110|gb|EDU10153.1| type II secretion system protein [Burkholderia pseudomallei 1655] gi|217392669|gb|EEC32692.1| type II secretion system protein [Burkholderia pseudomallei 576] gi|225933806|gb|EEH29793.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|235002635|gb|EEP52059.1| type II secretion system protein [Burkholderia pseudomallei MSHR346] Length = 319 Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 4/165 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + I R ++DFP+ALD++ V AGL + A+ + + S V E ++ Sbjct: 154 LARRIAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLL 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + ++V FST++ + G ++ +L LS LR ++ M+A Sbjct: 214 EMRSGFTKETALRNLALRTGAEDVDAFSTMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 273 Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + +A + I P ++ L+ L+ G Sbjct: 274 EERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRTLLPTMAG 318 >gi|293606487|ref|ZP_06688845.1| type II secretion system protein [Achromobacter piechaudii ATCC 43553] gi|292815110|gb|EFF74233.1| type II secretion system protein [Achromobacter piechaudii ATCC 43553] Length = 307 Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 74/184 (40%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR + + P LD IVR + G + A + +P+R Sbjct: 122 LWLRADKRRRRMIGQLPAFLDNIVRLITIGNSMGAAFQTAAATTDEPLREVVETAASLSR 181 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L ++ ++ R L+E+ + V+S+ + GG + L ++ +RD + ++ Sbjct: 182 SAKELDAALVQVSRMYGLKELYMVAAVVSLAMRFGGRSDQVLERMAAFMRDVAQARNELT 241 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A S E + SAWI+ LP ++ + + L DP G +L A + G + Sbjct: 242 ASSAEVRLSAWILALLPVGIAGFIIVANNKLFMGLWEDPLGFKMLLTAVVLQIGGCYWLY 301 Query: 181 LMIN 184 M Sbjct: 302 RMAK 305 >gi|294012437|ref|YP_003545897.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S] gi|292675767|dbj|BAI97285.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S] Length = 330 Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 60/148 (40%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + + I+KR+A P+ALD++V AGL V A + + + + + EF Sbjct: 172 IDNKIQKRSAAIRKGLPDALDLLVICAEAGLTVDAAFSRVARELGKAYPELGDEFHLTAI 231 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + L + T + + G L+ AL LS R + M+A Sbjct: 232 ELSFLTERRMAFENLATRVKLDAIKGVVTTMIQTEKYGTPLASALRVLSAEFRHERMMRA 291 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A + A + +I + + ++ Sbjct: 292 EEKAARLPAIMTVPLILFILPTLFVVIL 319 >gi|327543264|gb|EGF29697.1| flp pilus assembly protein TadC [Rhodopirellula baltica WH47] Length = 328 Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 63/148 (42%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + KR K P+ALD++V V AGL + A+ + + + EF Sbjct: 168 LGFMASKRREKIFLGLPDALDLMVVCVEAGLGLDQALRKVAEEMQKSHKAIGEEFSISNH 227 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 LG SE +S + + ++ ++++ + G ++++AL S +R ++ A Sbjct: 228 QLQLGSPRSEVLSGLGYRSGVDDLKQLASILIQADKFGSSVAQALRVQSDSMRTKRRQIA 287 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A K ++ + + ++ Sbjct: 288 EEKAAKTAVKMIFPLVLFIFPGIFVVLV 315 >gi|119472644|ref|ZP_01614635.1| type IV pilus biogenesis protein PilC [Alteromonadales bacterium TW-7] gi|119444848|gb|EAW26149.1| type IV pilus biogenesis protein PilC [Alteromonadales bacterium TW-7] Length = 409 Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 22/171 (12%), Positives = 54/171 (31%), Gaps = 6/171 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D I + AG+P+ A+ +I ++ V + + G LS+++ + Sbjct: 70 KDIALVTRQIATMLMAGVPLIQAIEMIGTGSTNKSVGKLMETIGDEVKAGQPLSQALRKH 129 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R + + G L + ++ + +K+K++ + I Sbjct: 130 PR-----YFDDLYCDLVASGEQSGALDKIFDRVALYKEKSEALKSKIKKAMFYPISVLVI 184 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 G + + V + + L + + + M L+ Sbjct: 185 AGIVTSILLIFVVPQFQDIFSGFGAELPAFTLFVIGISEFMQAYWWMILIA 235 Score = 35.1 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 40/129 (31%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG+P+ DA+ G S + V + G ++ ++ + Sbjct: 281 RTLSTTFAAGVPLVDALDSAAGASGNAVYRYAILDIKAEVSSGNQMNWAMRN------SK 334 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + G+L LA ++ I + + +E A + + Sbjct: 335 IFPDMVIQMVAIGEESGSLDGMLAKVATIYEQEVDDAVDGLSSLLEPLIMAVLGVLVGGL 394 Query: 140 VSTLVYFTS 148 + + Sbjct: 395 IVAMYLPIF 403 >gi|326205012|ref|ZP_08194862.1| Flp pilus assembly protein TadB-like protein [Clostridium papyrosolvens DSM 2782] gi|325984817|gb|EGD45663.1| Flp pilus assembly protein TadB-like protein [Clostridium papyrosolvens DSM 2782] Length = 247 Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 86/192 (44%), Gaps = 7/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA-------VIVGQSSDPVRSEFRR 54 K +I KR + F + L + S+ AG P+ + V+ + E + Sbjct: 55 KQIIYKRKRELNLQFKDLLISLASSLSAGKPLEKSFVGALSDLYVLYPSDDAHIVRETKI 114 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 +I L +S+ ++IS + ++ FS VI + + GGNL EA+ N SRI+ ++ Sbjct: 115 IINKLSLNVSIEDAISEFADRSDIDDIKNFSDVIIICKRTGGNLVEAIKNSSRIISEKIE 174 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 MK +++ L + I+ +P + ++ T+ Y+ + G + + + +++ Sbjct: 175 MKQEIETLLSSRRFEQKILNIMPIAMIFILSTTAGEYIKPVFITVTGRIAVTLCLVLLIV 234 Query: 175 GIMVMRLMINFD 186 ++ ++N Sbjct: 235 AYLISNKIMNIK 246 >gi|85713510|ref|ZP_01044500.1| type II secretion system protein [Nitrobacter sp. Nb-311A] gi|85699414|gb|EAQ37281.1| type II secretion system protein [Nitrobacter sp. Nb-311A] Length = 325 Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 60/148 (40%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 +K+ I KR FP+ALD+++ + +G+ + A + + + + EF Sbjct: 166 LKNAITKRQLSIKRAFPDALDLLLICLESGMSIEVAFRKVSTEIGNQSVALAEEFTLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + ++ V + + G L+++L +++ RD + +A Sbjct: 226 ELSYLQDRKIAYENLANRTGVEGVKSVCLALQQSERYGTPLAQSLRVMAQENRDMRMTEA 285 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 286 EKKAAALPPKLTVPMIVFFLPVLFVVIL 313 >gi|239833232|ref|ZP_04681561.1| type II secretion system protein [Ochrobactrum intermedium LMG 3301] gi|239825499|gb|EEQ97067.1| type II secretion system protein [Ochrobactrum intermedium LMG 3301] Length = 333 Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 63/157 (40%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + KR +P+ALD+++ V +G+ A + + S + E Sbjct: 169 VSNRATKRKQSIRRAWPDALDLMLICVESGMSTEAAFRRVADEIGIQSVELAEELMLTNA 228 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + L+ V + + + G +++AL LS+ RD + ++A Sbjct: 229 ELSFLPERRQAYENLANRTGLEPVKSVTQALIQAERYGTPVAQALRTLSQESRDLRLLEA 288 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + +A ++ K + +I + ++ P ++ + Sbjct: 289 EKKAAALPPKLTVPMIVFFLPVLFIVI--LGPAFIQI 323 >gi|134281772|ref|ZP_01768479.1| type II secretion system protein [Burkholderia pseudomallei 305] gi|134246834|gb|EBA46921.1| type II secretion system protein [Burkholderia pseudomallei 305] Length = 313 Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 68/165 (41%), Gaps = 4/165 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + I R ++DFP+ALD++ V AGL + A+ + + S V E ++ Sbjct: 148 LARRIAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLL 207 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + ++V FS ++ + G ++ +L LS LR ++ M+A Sbjct: 208 EMRSGFTKETALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 267 Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + +A + I P ++ L+ L+ G Sbjct: 268 EERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRTLLPTMAG 312 >gi|146276356|ref|YP_001166515.1| type II secretion system protein [Rhodobacter sphaeroides ATCC 17025] gi|145554597|gb|ABP69210.1| type II secretion system protein [Rhodobacter sphaeroides ATCC 17025] Length = 323 Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 75/161 (46%), Gaps = 4/161 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +K ++R + + FP+ALD+++ V AG + ++ + +S + EF V Sbjct: 162 IKRRAQERHDQIVAGFPDALDMMLVCVEAGQSLDQSILRVARESASGYPALAEEFEMVAH 221 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + M + + +VS F T + + G +++EAL S +RD++ M+A Sbjct: 222 EVKAGKERVAVLKDMAERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRA 281 Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + +A ++ K + ++ ++P + L+ + G L Sbjct: 282 EEKANTLPTKLTLGTMLLTVPPLMLILIGPSVYGIATQLGG 322 >gi|126443620|ref|YP_001064084.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|167908138|ref|ZP_02495343.1| type II secretion system protein [Burkholderia pseudomallei NCTC 13177] gi|126223111|gb|ABN86616.1| type II secretion system protein [Burkholderia pseudomallei 668] Length = 319 Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 68/165 (41%), Gaps = 4/165 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + I R ++DFP+ALD++ V AGL + A+ + + S V E ++ Sbjct: 154 LARRIAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLL 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + ++V FS ++ + G ++ +L LS LR ++ M+A Sbjct: 214 EMRSGFTKETALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 273 Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + +A + I P ++ L+ L+ G Sbjct: 274 EERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRTLLPTMAG 318 >gi|332671125|ref|YP_004454133.1| Type II secretion system F domain-containing protein [Cellulomonas fimi ATCC 484] gi|332340163|gb|AEE46746.1| Type II secretion system F domain protein [Cellulomonas fimi ATCC 484] Length = 286 Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 63/171 (36%), Gaps = 3/171 (1%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +P +D + +RAGL + +A+A I + +R F E E + + Sbjct: 110 WPEVVDHLASGIRAGLALPEALAQIGERGPVELREPFVAFAEDYRATGRFGECLDLLKAR 169 Query: 76 MPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + G +L L LS LR+ + +++A +A + Sbjct: 170 LADPVADRIVEALRMTRDVGGTDLGRLLRTLSTFLREDLRTRGELEARQSWTVNAARLAA 229 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + P+ V L+ S + G ++L AA ++ +M + Sbjct: 230 AAPWLVLGLLATRSEAAAA--YDSTAGLLVLAAGAASTVVAYALMLRIARL 278 >gi|32473987|ref|NP_866981.1| secretion system protein TadC [Rhodopirellula baltica SH 1] gi|32444524|emb|CAD74523.1| probable secretion system protein TadC [Rhodopirellula baltica SH 1] Length = 328 Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 63/148 (42%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + KR K P+ALD++V V AGL + A+ + + + EF Sbjct: 168 LGFMASKRREKIFLGLPDALDLMVVCVEAGLGLDQALRKVAEEMQKSHKAIGEEFSISNH 227 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 LG SE +S + + ++ ++++ + G ++++AL S +R ++ A Sbjct: 228 QLQLGSPRSEVLSGLGYRSGVDDLKQLASILIQADKFGSSVAQALRVQSDSMRTKRRQIA 287 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A K ++ + + ++ Sbjct: 288 EEKAAKTAVKMIFPLVLFIFPGIFVVLV 315 >gi|116249986|ref|YP_765824.1| component of pilus protein [Rhizobium leguminosarum bv. viciae 3841] gi|115254634|emb|CAK05708.1| putative component of pilus protein [Rhizobium leguminosarum bv. viciae 3841] Length = 328 Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 61/148 (41%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + + KR +P+ALD+++ V +G+ + A+ + + S + E Sbjct: 170 ISNRMGKRQHSIKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPALAEEMVLTTA 229 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + ++ V + + + G +++AL L++ RD + +A Sbjct: 230 ELSFLPDRRVALENLATRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEA 289 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 290 EKKAAALPPKLTVPMILFFLPVLIAVIL 317 >gi|56697924|ref|YP_168295.1| TadC family type II/IV secretion system protein [Ruegeria pomeroyi DSS-3] gi|56679661|gb|AAV96327.1| type II/IV secretion system protein, TadC subfamily [Ruegeria pomeroyi DSS-3] Length = 326 Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 75/158 (47%), Gaps = 4/158 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + + R FP+ALD+++ V AG + ++ + + S + EF V Sbjct: 164 ITRRVDTRKENITRAFPDALDMLLVCVEAGQSLDQSIVRVSKELRASYPDLADEFEMVAY 223 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + + M + +VS F TV+ SQ G +++EAL + +RD++ M+A Sbjct: 224 EMKAGKEKDKVLRDMGTRCGVVDVSSFVTVMIQSSQFGTSIAEALRVYAGEMRDKRVMRA 283 Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154 + A + K + A ++ ++P + LV ++ G M++ Sbjct: 284 EEAANKLPTKMTLATMMLTVPPLLIILVGPSAKGIMDL 321 >gi|284991838|ref|YP_003410392.1| Type II secretion system F domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284065083|gb|ADB76021.1| Type II secretion system F domain protein [Geodermatophilus obscurus DSM 43160] Length = 295 Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 1/158 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R + + LD + +V AGL A+A P+ E R ++ Sbjct: 138 LYSRGQERQQAIALELADTLDQMTIAVEAGLGFEAAMARAGRNGRGPLAEELVRTLQDIA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G E+ + + ++ F + G ++++ L + +R ++ +A+ + Sbjct: 198 VGQPRREAYLALAERTAVPDLRRFIRAVVQADAYGVSIADVLRTQAAEMRLKRRQRAEEK 257 Query: 121 ALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 A+ + K I+ LP L+ Sbjct: 258 AMQIPVKVIFPLILCILPTLFIVLLGPAVLDIAAAFGG 295 >gi|332188365|ref|ZP_08390090.1| bacterial type II secretion system F domain protein [Sphingomonas sp. S17] gi|332011594|gb|EGI53674.1| bacterial type II secretion system F domain protein [Sphingomonas sp. S17] Length = 332 Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 68/166 (40%), Gaps = 4/166 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +K+ I KRT P+ALD++V AGL V A A + + + + EF+ Sbjct: 167 LKNQIDKRTHAIRKGLPDALDLMVICAEAGLTVDAAFARVARELRRAYPELGDEFQLTSV 226 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +++ + + L + T + + G L+ +L LS R+ + M+A Sbjct: 227 ELGFLTDRRQALENLSMRVNLDALRGVVTTMIQTEKYGTPLASSLRVLSAEFRNERMMRA 286 Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162 + +A + A + I+ LP ++ + L++ G Sbjct: 287 EEKAARLPAIMTVPLILFILPTLFIVILGPAGCSINDTLMSTMGGK 332 >gi|51245380|ref|YP_065264.1| hypothetical protein DP1528 [Desulfotalea psychrophila LSv54] gi|50876417|emb|CAG36257.1| hypothetical membrane protein [Desulfotalea psychrophila LSv54] Length = 283 Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 67/158 (42%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +K R + FP+A+D+++ V AG+ + A+ + + +S + EF+ + Sbjct: 122 LKIRGHYRRKELDRTFPDAIDLLMVCVEAGMGIDSAIRRVAQEIHITSPELAKEFKILSL 181 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G +E + + + L+++ +++ + G ++ AL + +R ++ + Sbjct: 182 ELKTGKPRNECLKNLAKRTNLRDIDNLVSLLIQAQKYGTGVANALRIHAEEMRQKRYSRL 241 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + A + K +I + + ++ P + V Sbjct: 242 EEMAAKLPVKLVIPLIFFIFPALFLVI--LGPAMIRVF 277 >gi|327194689|gb|EGE61535.1| pilus component protein [Rhizobium etli CNPAF512] Length = 328 Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 62/148 (41%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + + KR +P+ALD+++ V +G+ + A+ + + S P+ E Sbjct: 170 ISNRMGKRQHSIKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPPLAEEMVLTTA 229 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + ++ V + + + G +++AL L++ RD + +A Sbjct: 230 ELSFLPDRRVALENLAMRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEA 289 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 290 EKKAAALPPKLTVPMILFFLPVLIAVIL 317 >gi|325673436|ref|ZP_08153127.1| type II secretion system protein [Rhodococcus equi ATCC 33707] gi|325555457|gb|EGD25128.1| type II secretion system protein [Rhodococcus equi ATCC 33707] Length = 296 Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 58/158 (36%), Gaps = 1/158 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ ++R A + LD + +V AGL A+ P+ EF R ++ Sbjct: 138 LQSRGQERQAAIELALADTLDQMTIAVEAGLGFEAAMQRAAKNGKGPLAEEFIRTLQDIQ 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S + + + F + + G ++E L + +R ++ A+ + Sbjct: 198 MGQSRRIAYLDLAARTKAPNLRRFLRAVIQADEYGVAIAEVLRTQASEMRLKRRQSAEEK 257 Query: 121 ALSMEAKA-SAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 A+ + K + LP ++ M VL Sbjct: 258 AMKVPVKVLFPLMTCILPTIFIVILGPAVINMMEVLGG 295 >gi|299065626|emb|CBJ36798.1| type IV pilus assembly transmembrane protein [Ralstonia solanacearum CMR15] Length = 421 Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 20/177 (11%), Positives = 55/177 (31%), Gaps = 6/177 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60 + + D + ++AG+P+ +V +I ++ + Sbjct: 70 RRRAARGKKIVPKDIAYFTRQLSTMLKAGVPLLQSVDIIARGHANPNFTQLLTEIRVDIE 129 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S++++ R ++ + + GG L L LS + +KA+++ Sbjct: 130 SGSSMAQAFRRHPQH-----FDSLYCNLIDAGEQGGILDALLERLSMYMEKSIALKAQIK 184 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + + + + + V G L+ + + + Sbjct: 185 SAMIYPISVLTVAFLVTVVLMIFVVPAFKGVFASFGATLPAPTLVVMGISDFFVKWW 241 >gi|238020907|ref|ZP_04601333.1| hypothetical protein GCWU000324_00804 [Kingella oralis ATCC 51147] gi|237867887|gb|EEP68893.1| hypothetical protein GCWU000324_00804 [Kingella oralis ATCC 51147] Length = 427 Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 58/165 (35%), Gaps = 7/165 (4%) Query: 1 MKHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIET 58 + + K+R K D + ++AGLP+ A ++ S+ + + V + Sbjct: 73 LTKMKKQRQKKITSADIAVFTRQLSTMMKAGLPLMQAFDIVAKGHSNAAMTNLLLDVKNS 132 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G SL+ S S+ + F + + GG L L L+ + + +K K Sbjct: 133 VEQGNSLASSFSQHPK-----YFDKFYCNLVAAGEAGGVLEGLLDKLATYMEKTQAIKKK 187 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 V++ A + L + V + L + G Sbjct: 188 VKSALTYPIAVIVVAIVLILVMMMFVLPSFKKIYEGLGAELPGLT 232 >gi|167579124|ref|ZP_02371998.1| type II secretion system protein [Burkholderia thailandensis TXDOH] Length = 319 Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 68/165 (41%), Gaps = 4/165 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + I R ++DFP+ALD++ V AGL + A+ + + S V E ++ Sbjct: 154 LARRIASRQRMIIEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLL 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + ++V FS ++ + G ++ +L LS LR ++ M+A Sbjct: 214 EMRSGFTKEAALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 273 Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + +A + I P ++ L+ L+ G Sbjct: 274 EERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRTLLPTMAG 318 >gi|154250529|ref|YP_001411353.1| type II secretion system protein [Parvibaculum lavamentivorans DS-1] gi|154154479|gb|ABS61696.1| type II secretion system protein [Parvibaculum lavamentivorans DS-1] Length = 291 Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 86/184 (46%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + +KR D D + + + G +S A+A S V F I Sbjct: 105 IDYRARKRMNALSDAMLGYFDRVRQLLVVGNSLSVALARATQSSPPIVIEFFSPTIRRIA 164 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++ES++++ L E+ F T I + GG+L+ L+NL +R R + +V+ Sbjct: 165 NGAGVAESVNQLADETDLYELRLFGTAIETNLRFGGSLTSILSNLIDNIRRRAAVMREVR 224 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + +ASAW++G LP V+++V S YM I +P G LL A + G +MR Sbjct: 225 GSTSQIRASAWVLGLLPMIVASVVMVQSTDYMRWFIEEPAGRKLLIYCALSQIFGAFMMR 284 Query: 181 LMIN 184 ++ Sbjct: 285 NVVR 288 >gi|325291654|ref|YP_004277518.1| components of type IV pilus [Agrobacterium sp. H13-3] gi|325059507|gb|ADY63198.1| components of type IV pilus [Agrobacterium sp. H13-3] Length = 328 Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 59/148 (39%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + + KR A +P+ALD+++ + +G+ + A+ + + S + E Sbjct: 170 VSNAMNKRQASIRRAWPDALDLMLICIESGVSMEAAMRRVAEEMGEQSPELAEEMMLTTA 229 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ L V + + G L++AL L++ RD + +A Sbjct: 230 ELSFLQDRRIALENFGMRTQLDGVKSVVQALIQAERYGTPLAQALRVLAQEGRDERMNEA 289 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 290 EKKAAALPPKLTVPMIIFFLPVLIAVIL 317 >gi|254463054|ref|ZP_05076470.1| type II/IV secretion system protein, TadC subfamily [Rhodobacterales bacterium HTCC2083] gi|206679643|gb|EDZ44130.1| type II/IV secretion system protein, TadC subfamily [Rhodobacteraceae bacterium HTCC2083] Length = 323 Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 67/148 (45%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + I R + FP++LD+++ V AG + ++ + + S + E+ V + Sbjct: 163 ITRRIDTRKEQIESGFPDSLDMMLVCVEAGQSLDQSIVRVAAELHHSYPFLADEYEIVAQ 222 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G ++ M +Q+V+ F TV+ + G +++EAL + +RD++ M+A Sbjct: 223 EMKAGKDKIAVLNDMSERCGVQDVASFVTVLIQSTSFGTSIAEALRVYAGEMRDKRVMRA 282 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A + K + + + ++ Sbjct: 283 EEKANKLPTKMTLATMMLTVPPLLIILV 310 >gi|325132888|gb|EGC55565.1| Bacterial type II secretion system protein F domain protein [Neisseria meningitidis M6190] gi|325138873|gb|EGC61423.1| Bacterial type II secretion system protein F domain protein [Neisseria meningitidis ES14902] Length = 410 Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 54/183 (29%), Gaps = 6/183 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60 + + +D + ++AGLP+ A ++ + + + Sbjct: 58 RVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRGEVE 117 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SLS + S + F + + GG L L L+ + ++ KV+ Sbjct: 118 QGSSLSRAFSNHPK-----YFDRFYCNLVAAGETGGVLESLLDKLAIYKEKTQAIRKKVK 172 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + L F + V + + + + + M Sbjct: 173 TALTYPVSVIAVAIGLVFVMMIFVLPAFKEVYANMGAELPALTQTVMDMSDFFVSYGWMV 232 Query: 181 LMI 183 L+ Sbjct: 233 LIA 235 >gi|261378358|ref|ZP_05982931.1| 3-isopropylmalate dehydrogenase [Neisseria cinerea ATCC 14685] gi|269145466|gb|EEZ71884.1| 3-isopropylmalate dehydrogenase [Neisseria cinerea ATCC 14685] Length = 410 Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 58/177 (32%), Gaps = 6/177 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLS 66 + +D + ++AGLP+ A ++ ++ + + G +LS Sbjct: 64 KRKITQEDITVFTRQLATMMKAGLPLMQAFEIVARGHANPSMTEMLMEIRSEVEQGTTLS 123 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + SR + F + ++GG L L L+ ++++ KV+ Sbjct: 124 RAFSRYPK-----YFDRFYCNLVSAGEMGGVLESLLDKLAVYKEKTQSIRKKVKTALTYP 178 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + L F + V + + + + + + + L+ Sbjct: 179 ISVIAVAIGLVFVMMIFVLPAFKEVYSNMGAELPALTQAVMDISEFFVAYGWIILIA 235 >gi|167617239|ref|ZP_02385870.1| type II secretion system protein [Burkholderia thailandensis Bt4] gi|257141112|ref|ZP_05589374.1| type II secretion system protein [Burkholderia thailandensis E264] Length = 319 Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 68/165 (41%), Gaps = 4/165 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + I R ++DFP+ALD++ V AGL + A+ + + S V E ++ Sbjct: 154 LARRIASRQRMIIEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLL 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + ++V FS ++ + G ++ +L LS LR ++ M+A Sbjct: 214 EMRSGFTKEAALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 273 Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + +A + I P ++ L+ L+ G Sbjct: 274 EERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRTLLPTMAG 318 >gi|190889886|ref|YP_001976428.1| pilus component protein [Rhizobium etli CIAT 652] gi|190695165|gb|ACE89250.1| pilus component protein [Rhizobium etli CIAT 652] Length = 328 Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 62/148 (41%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + + KR +P+ALD+++ V +G+ + A+ + + S P+ E Sbjct: 170 ISNRMGKRQHSIKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPPLAEEMVLTTA 229 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + ++ V + + + G +++AL L++ RD + +A Sbjct: 230 ELSFLPDRRVALENLATRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEA 289 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 290 EKKAAALPPKLTVPMILFFLPVLIAVIL 317 >gi|300702980|ref|YP_003744582.1| type IV pilus assembly transmembrane protein [Ralstonia solanacearum CFBP2957] gi|299070643|emb|CBJ41938.1| type IV pilus assembly transmembrane protein [Ralstonia solanacearum CFBP2957] Length = 421 Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 22/180 (12%), Positives = 55/180 (30%), Gaps = 7/180 (3%) Query: 2 KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ 59 K R K D + ++AG+P+ +V +I ++ + Sbjct: 69 KRRRAARGKKITPKDVAYFTRQLSTMLKAGVPLLQSVDIIARGHANPNFTQLLTEIRVDI 128 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G S++++ R + + + GG L L LS + +KA++ Sbjct: 129 ESGSSMAQAFRRHPK-----YFDSLYCNLIDAGEQGGILDALLERLSMYMEKSIALKAQI 183 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ + + + + + V L+ + + + + Sbjct: 184 KSAMIYPISVLTVAFLVTVVLMIFVVPAFKNVFASFGATLPAPTLVVMNISDFFVKWWYI 243 >gi|119962497|ref|YP_948623.1| type II secretion system protein F [Arthrobacter aurescens TC1] gi|119949356|gb|ABM08267.1| putative bacterial type II secretion system protein F domain [Arthrobacter aurescens TC1] Length = 296 Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 65/154 (42%), Gaps = 2/154 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +R + PN LD ++ SV AGL A+A S P+ E R ++ G Sbjct: 140 RAAERQKAIQTELPNTLDQMLISVEAGLGFEGAMARAGQNGSGPLAMEMLRTLQDMQAGR 199 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S E+ + + + ++ F I G ++ L ++ +R ++ +A+ QA+ Sbjct: 200 SRKEAYVALAERVDVHDLRAFVGAIVQADTYGIAIANVLRTQAKQMRIKRRQRAEEQAMK 259 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + K ++ + + ++ P +NV+ N Sbjct: 260 LPVKVLFPLMFCILPVLFIVI--MGPAVLNVMTN 291 >gi|297182320|gb|ADI18488.1| type II secretory pathway, component pulf [uncultured Verrucomicrobiales bacterium HF4000_13K17] Length = 417 Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 25/186 (13%), Positives = 66/186 (35%), Gaps = 12/186 (6%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQH 60 + ++R L D N + ++AG+P++ A+ + S +S +++ Sbjct: 65 RRFGQRRKKPKLQDLANFTRQLANLLKAGMPLTGALNSMTSLDSEGIPKSVCAQLLADVR 124 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +LS S+ + P + + G++ E L L+ ++ K+ Sbjct: 125 EGRTLSMSMGKFPEIFPD-----MYLNMVKAGESSGSMVEVLKRLADHYERFAEVRQKII 179 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGIM 177 + + +++G + + + P +M + L + + Sbjct: 180 SALVYPM---FVMGLGFLLIFVFMSYILPKFMTIFKGMKVQLPLSTRILEGMSGFFENWW 236 Query: 178 VMRLMI 183 + L++ Sbjct: 237 WLVLIM 242 >gi|15676248|ref|NP_273382.1| pilus assembly protein PilG [Neisseria meningitidis MC58] gi|121635531|ref|YP_975776.1| pilus-assembly protein [Neisseria meningitidis FAM18] gi|161870737|ref|YP_001599910.1| type IV pilus assembly protein [Neisseria meningitidis 053442] gi|218768891|ref|YP_002343403.1| pilus-assembly protein [Neisseria meningitidis Z2491] gi|254805632|ref|YP_003083853.1| type IV pilus assembly protein [Neisseria meningitidis alpha14] gi|7225553|gb|AAF40776.1| pilus assembly protein PilG [Neisseria meningitidis MC58] gi|120867237|emb|CAM11006.1| pilus-assembly protein [Neisseria meningitidis FAM18] gi|121052899|emb|CAM09251.1| pilus-assembly protein [Neisseria meningitidis Z2491] gi|161596290|gb|ABX73950.1| type IV pilus assembly protein [Neisseria meningitidis 053442] gi|254669174|emb|CBA07900.1| type IV pilus assembly protein [Neisseria meningitidis alpha14] gi|254670164|emb|CBA05222.1| pilus assembly protein PilC [Neisseria meningitidis alpha153] gi|254672314|emb|CBA05441.1| pilus assembly protein PilC [Neisseria meningitidis alpha275] gi|261391858|emb|CAX49317.1| type IV pilus biogenesis protein PilG [Neisseria meningitidis 8013] gi|308388541|gb|ADO30861.1| pilus-assembly protein [Neisseria meningitidis alpha710] gi|316984335|gb|EFV63309.1| pilin biogenesis protein [Neisseria meningitidis H44/76] gi|319411192|emb|CBY91597.1| type IV pilus biogenesis protein PilG [Neisseria meningitidis WUE 2594] gi|325128919|gb|EGC51773.1| Bacterial type II secretion system protein F domain protein [Neisseria meningitidis N1568] gi|325134914|gb|EGC57546.1| Bacterial type II secretion system protein F domain protein [Neisseria meningitidis M13399] gi|325136908|gb|EGC59505.1| Bacterial type II secretion system protein F domain protein [Neisseria meningitidis M0579] gi|325140982|gb|EGC63488.1| Bacterial type II secretion system protein F domain protein [Neisseria meningitidis CU385] gi|325145128|gb|EGC67410.1| Bacterial type II secretion system protein F domain protein [Neisseria meningitidis M01-240013] gi|325199527|gb|ADY94982.1| Bacterial type II secretion system protein F domain protein [Neisseria meningitidis H44/76] gi|325202847|gb|ADY98301.1| Bacterial type II secretion system protein F domain protein [Neisseria meningitidis M01-240149] gi|325208840|gb|ADZ04292.1| Bacterial type II secretion system protein F domain protein [Neisseria meningitidis NZ-05/33] Length = 410 Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 54/183 (29%), Gaps = 6/183 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60 + + +D + ++AGLP+ A ++ + + + Sbjct: 58 RVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRGEVE 117 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SLS + S + F + + GG L L L+ + ++ KV+ Sbjct: 118 QGSSLSRAFSNHPK-----YFDRFYCNLVAAGETGGVLESLLDKLAIYKEKTQAIRKKVK 172 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + L F + V + + + + + M Sbjct: 173 TALTYPVSVIAVAIGLVFVMMIFVLPAFKEVYANMGAELPALTQTVMDMSDFFVSYGWMV 232 Query: 181 LMI 183 L+ Sbjct: 233 LIA 235 >gi|17547545|ref|NP_520947.1| fimbrial assembly transmembrane protein [Ralstonia solanacearum GMI1000] gi|17429849|emb|CAD16533.1| probable fimbrial assembly transmembrane protein [Ralstonia solanacearum GMI1000] Length = 421 Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 19/185 (10%), Positives = 56/185 (30%), Gaps = 6/185 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60 + + D + ++AG+P+ +V +I ++ + Sbjct: 70 RRRAARGKKIVPKDIAYFTRQLSTMLKAGVPLLQSVDIIARGHANPNFTQLLTEIRVDIE 129 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S++++ R ++ + + GG L L LS + +KA+++ Sbjct: 130 SGSSMAQAFRRHPQH-----FDSLYCNLIDAGEQGGILDALLERLSMYMEKSIALKAQIK 184 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + + + + + V L+ + + + + Sbjct: 185 SAMIYPISVLTVAFLVTVVLMIFVVPAFKNVFASFGATLPAPTLVVMGISDFFVKWWYII 244 Query: 181 LMINF 185 + Sbjct: 245 IFTPI 249 >gi|225181994|ref|ZP_03735426.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] gi|225167279|gb|EEG76098.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] Length = 305 Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 75/155 (48%), Gaps = 2/155 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ + R A FP+ LD++ SV AGL A+A +V +S PV EFRRV++ Sbjct: 148 LENTARSRKASIEKSFPDTLDLLTVSVGAGLGFDGALAKVVEKSEGPVAEEFRRVLQEIK 207 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G + E++ + +V F+ I QLG N+ + L S +R ++ + + Q Sbjct: 208 MGKARREALRDFGERTGIDDVKSFTGAIVQADQLGLNIGKTLKVQSEQMRRKRRQRVEEQ 267 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A+ + K ++ + + ++ P + ++ Sbjct: 268 AMKVPVKMLLPLVAFIFPTIFIVL--LGPAMIQIV 300 >gi|296284556|ref|ZP_06862554.1| hypothetical protein CbatJ_13056 [Citromicrobium bathyomarinum JL354] Length = 342 Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 60/148 (40%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + + KKRT P+ALD++V AGL + A + + + + EF Sbjct: 182 IANKAKKRTDAIRKGLPDALDLLVICAEAGLTIDSAFTRVAKELGRAYPELGDEFLLTSI 241 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + + L+ V T + + G L+ AL LS R+ + M+A Sbjct: 242 ELSFLNNRKMAFDNLAYRVDLEAVQGVVTTMIQTERYGTPLASALRVLSAEFRNERMMRA 301 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A + A + +I + + ++ Sbjct: 302 EEKAARLPAIMTVPLILFILPTLFIVIL 329 >gi|325981148|ref|YP_004293550.1| Type II secretion system F domain [Nitrosomonas sp. AL212] gi|325530667|gb|ADZ25388.1| Type II secretion system F domain [Nitrosomonas sp. AL212] Length = 407 Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 18/170 (10%), Positives = 48/170 (28%), Gaps = 6/170 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSES 68 D + +++G+P+ A +I S+ + + G +L+++ Sbjct: 63 RIIEKDITLFTRQLATMMKSGVPLLQAFDIIGKGHSNRALSKLLMDIKADVETGSNLTDA 122 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + + G L L L+ + +K K+++ + Sbjct: 123 FRKYPL-----YFDALYCNLVGAGEAAGILDTILDRLATYKEKIQAIKGKIKSALFYPIS 177 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + + V D L +A + + Sbjct: 178 IIVVAFVITAIIMIFVIPAFKDLFEGFGADLPAPTLFVMAISDFFVAYWW 227 >gi|269955832|ref|YP_003325621.1| type II secretion system protein [Xylanimonas cellulosilytica DSM 15894] gi|269304513|gb|ACZ30063.1| type II secretion system protein [Xylanimonas cellulosilytica DSM 15894] Length = 285 Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 66/173 (38%), Gaps = 3/173 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + +P +D + VRAGL + +AV + + +R F R +ES+ + Sbjct: 107 EVWPEVVDHLASGVRAGLSLPEAVGQLGERGPVELREPFARFAADYRATGRFTESLDLLK 166 Query: 74 RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G +L L LS LR+ + +++A + A + Sbjct: 167 ARLADPVADRIIEALRLTREVGGSDLGRLLRTLSTFLREDARTRGELEARQSWTVSGARL 226 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + P+ V + T P + G ++L AA ++ +M + Sbjct: 227 AAAGPWVVLAFL-ATRPE-TARAYDSAAGVLVLAGGAACSVVAYRLMVKIGRL 277 >gi|134095952|ref|YP_001101027.1| type 4 fimbrial assembly protein [Herminiimonas arsenicoxydans] gi|133739855|emb|CAL62906.1| type 4 fimbrial assembly protein [Herminiimonas arsenicoxydans] Length = 410 Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 20/170 (11%), Positives = 50/170 (29%), Gaps = 6/170 (3%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSE 67 D + ++AG+P+ + ++ + V + + G SL++ Sbjct: 66 KKVSEKDITLFTRQLATMMKAGVPLLQSFDIVAKGNDNPSVSKLIQDIRADVETGTSLNQ 125 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + + + + G L + L L+ +KAK+++ Sbjct: 126 AFRKFPL-----YFDPLFCNLVGAGEQAGILEDLLTRLAIYKEKTLAIKAKIKSALFYPI 180 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 A + + + V D L+ +A + + Sbjct: 181 AILAVAFIVTAVIMIWVVPAFKEVFKSFGADLPAPTLMVMAISDFFVAYW 230 >gi|241207162|ref|YP_002978258.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861052|gb|ACS58719.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 328 Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 61/148 (41%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + + KR +P+ALD+++ V +G+ + A+ + + S + E Sbjct: 170 ISNRMGKRQHSIKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPALAEEMVLTTA 229 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + ++ V + + + G +++AL L++ RD + +A Sbjct: 230 ELSFLPDRRAALENLATRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEA 289 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 290 EKKAAALPPKLTVPMILFFLPVLIAVIL 317 >gi|72160531|ref|YP_288188.1| integral membrane protein [Thermobifida fusca YX] gi|71914263|gb|AAZ54165.1| putative integral membrane protein [Thermobifida fusca YX] Length = 250 Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 56/180 (31%), Gaps = 4/180 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L ++R L + I +R G A+A + + + +E G Sbjct: 66 LARRR----LRGCADVCRAIAAELRCGSSPGKALAAALRGADPLIAAELAEAAVLAEAGH 121 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++ R + + V + G ++ + L+ L + + ++ Sbjct: 122 DPVPALRAASRRPGGTAWASLAVCWQVAASSGTGVAAVVERLADALAHQDALHRELDIHL 181 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + +A ++ LP + + L P G L A G+ R ++ Sbjct: 182 AGPRTTAVLLAGLPIAGLLMASALGGAPLLFLFTTPLGWGCLCAGIALNAAGVWWTRRLV 241 >gi|304314056|ref|YP_003849203.1| hypothetical protein MTBMA_c02820 [Methanothermobacter marburgensis str. Marburg] gi|302587515|gb|ADL57890.1| putative membrane protein [Methanothermobacter marburgensis str. Marburg] Length = 359 Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 74/178 (41%), Gaps = 2/178 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR+++ + P AL + +++GL + D++ + + EF R +E G + Sbjct: 178 KRSSEASRELPFALRQMATELKSGLGLHDSMRSVAMSGYGALSEEFARTLEEIKYGETTE 237 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ M + + I+ GG+LS+ L ++ + MK K + + + Sbjct: 238 SALIEMSNRIESDGLKRAVYQITRTLNSGGDLSKTLNVIADDIAYEMRMKLKDYSQKLNS 297 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI--MVMRLM 182 ++ ++ V LV + + + P +L+ + ML+G +++ + Sbjct: 298 FTMIYMFLAILGPVIFLVMLLAASTVMGSVLPPIAIILIYLFLFPMLVGFMAFMIKRL 355 >gi|258405283|ref|YP_003198025.1| Type II secretion system F domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257797510|gb|ACV68447.1| Type II secretion system F domain protein [Desulfohalobium retbaense DSM 5692] Length = 320 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 67/148 (45%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + +KR L FP+ALD++V V AG+ + A++ + +S + + E Sbjct: 159 LTNKRQKRRQTILKGFPDALDLMVVCVEAGMGLDAAISRVAKESKSNNATLSEELHFFTL 218 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ +++ + LQ++ +T++ + G ++S+AL S +R + +A Sbjct: 219 ETRAGMPRKDALKNLAMRTDLQQMQNLTTLLIQTEKFGTSVSQALKVFSESMRTERFQRA 278 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A + K +I + + + Sbjct: 279 EEKAAKIPVKLLFPLIMFIFPSLFVAIL 306 >gi|15887568|ref|NP_353249.1| components of type IV pilus [Agrobacterium tumefaciens str. C58] gi|15155105|gb|AAK86034.1| components of type IV pilus [Agrobacterium tumefaciens str. C58] Length = 328 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 59/148 (39%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + + KR A +P+ALD+++ + +G+ + A+ + + S + E Sbjct: 170 VSNRMTKRQASIKRAWPDALDLMLICIESGVSMESAMRRVAEEMGEQSPELAEEMILTTA 229 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ L V + + G L++AL L++ RD + +A Sbjct: 230 ELSFLQDRRTALENFGMRTQLDGVKSVVQALIQAERYGTPLAQALRVLAQEGRDERMNEA 289 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 290 EKKAAALPPKLTVPMIIFFLPVLIAVIL 317 >gi|312139259|ref|YP_004006595.1| type ii secretion system integral membrane subunit [Rhodococcus equi 103S] gi|311888598|emb|CBH47910.1| putative type II secretion system integral membrane subunit [Rhodococcus equi 103S] Length = 296 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 58/158 (36%), Gaps = 1/158 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ ++R A + LD + +V AGL A+ P+ EF R ++ Sbjct: 138 LQSRGQERQAAIELALADTLDQMTIAVEAGLGFEAAMQRAAKNGKGPLAEEFIRTLQDIQ 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S + + + F + + G ++E L + +R ++ A+ + Sbjct: 198 MGQSRRIAYLDLAARTKAPNLRRFLRAVIQADEYGVAIAEVLRTQASEMRLKRRQSAEEK 257 Query: 121 ALSMEAKA-SAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 A+ + K + LP ++ M VL Sbjct: 258 AMKVPVKVLFPLMTCILPTIFIVILGPAVINMMEVLGG 295 >gi|328953758|ref|YP_004371092.1| Type II secretion system F domain protein [Desulfobacca acetoxidans DSM 11109] gi|328454082|gb|AEB09911.1| Type II secretion system F domain protein [Desulfobacca acetoxidans DSM 11109] Length = 302 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 63/148 (42%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + H I R K + P+ALD++V V AGL ++ A+ + + + EF + Sbjct: 141 LNHKISARQKKISEGLPDALDLLVVCVEAGLGLNAAMKRVADDLKMNNPVLSLEFNMLNL 200 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL +++ + ++E+S ++ + G ++++AL S +R + + Sbjct: 201 EILAGLDREQALRNLAERTGVEELSTLCAILIQADRFGTSIAQALRVQSDTMRTNRRQRL 260 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + A K +I + + ++ Sbjct: 261 EELAARTPVKLVFPLILFIFPALVVVIL 288 >gi|154250694|ref|YP_001411518.1| type II secretion system protein [Parvibaculum lavamentivorans DS-1] gi|154154644|gb|ABS61861.1| type II secretion system protein [Parvibaculum lavamentivorans DS-1] Length = 322 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 62/160 (38%), Gaps = 5/160 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 ++++I +R FP+ALD+++ V +G+ + A + + + E Sbjct: 164 VENVISRRQDSIRKAFPDALDLMLICVESGMSIEAAFQKVAAEIGAQSVELAEELGLTTA 223 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + R L V +T + + G L +AL +++ RD + +A Sbjct: 224 ELSYLQERRMAYENLARRTGLPGVKAVATTLIQAERYGTPLGQALRVMAQENRDMRMAEA 283 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + +A + K + +I + ++ P + N Sbjct: 284 EKKAAGLPPKLTVPMILFFLPVLFGVI--LGPAIIKSFAN 321 >gi|78222607|ref|YP_384354.1| type II secretion system protein [Geobacter metallireducens GS-15] gi|78193862|gb|ABB31629.1| type II secretion system protein [Geobacter metallireducens GS-15] Length = 405 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 19/167 (11%), Positives = 49/167 (29%), Gaps = 4/167 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + +GLP+ + ++ Q + E ++ G S Sbjct: 64 TKDLVIFTRQFATMIDSGLPLVQCLDILSSQQENATFKEVLIKVKETVEGGS----TFAD 119 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + ++GG L L L+ + +K +++ + I Sbjct: 120 ALSKHPKVFDQLFVNLVAAGEVGGILDTILNRLAAYIEKAMKLKKQIKGAMVYPATIMTI 179 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + V T + G +A + ++ +++ Sbjct: 180 AIGVVAVILIFVIPTFAKMFADFGGELPGATKFVIALSNFVVKYILL 226 Score = 39.7 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 13/130 (10%), Positives = 39/130 (30%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+P+ D + ++ + + V E + S++E + Sbjct: 273 FTRTLGTLISSGVPIMDGLEIVAKTAGNKVVEEAV-----YKVRSSIAEGKTMAEPLQEC 327 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G + L+ ++ D + ME ++ ++ Sbjct: 328 GVFPPMVVQMISVGEATGAMDAMLSKIADFYDDEVDDAVSALTALMEPMLMVFLGTTVGG 387 Query: 139 CVSTLVYFTS 148 V + Sbjct: 388 LVIAMYLPIF 397 >gi|331007278|ref|ZP_08330481.1| Type IV fimbrial assembly protein PilC [gamma proteobacterium IMCC1989] gi|330418927|gb|EGG93390.1| Type IV fimbrial assembly protein PilC [gamma proteobacterium IMCC1989] Length = 404 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 23/165 (13%), Positives = 48/165 (29%), Gaps = 4/165 (2%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D + V+AG+P+ + ++ S +P E I T + + + Sbjct: 66 DIATFTRQLATMVKAGVPLVQSFDIVADGSDNPNMKELILSIRTDVASGTSFAATLK--- 122 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + G L L L+ + +KAK++ A I Sbjct: 123 -KHPKYFDELFCNLIAAGEQSGALETLLDRLAVYKEKTEILKAKIKKALTYPIAIVLISL 181 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + V + D LL + + + Sbjct: 182 VVTGILLIKVVPQFESTFSSFGADLPAFTLLVLNLSEFTQEYWWI 226 Score = 35.9 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 38/133 (28%), Gaps = 5/133 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + + AG+P+ +A+ + G + + + E I + S R Sbjct: 271 LARYARTLATTFAAGVPLINALESVAGSTGNIIYEEGVLSIRDEVATGIQLNSSMRASGL 330 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P ++ + G L E L + D + A +E + Sbjct: 331 FP-----SMMLQLTAIGEESGALDEMLEKAATYHEDIVDNTVDNLASLIEPLIMVVLGVL 385 Query: 136 LPFCVSTLVYFTS 148 + + + Sbjct: 386 VGGLLIAMYLPIF 398 >gi|317129793|ref|YP_004096075.1| type II secretion system F domain [Bacillus cellulosilyticus DSM 2522] gi|315474741|gb|ADU31344.1| Type II secretion system F domain [Bacillus cellulosilyticus DSM 2522] Length = 401 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 65/183 (35%), Gaps = 21/183 (11%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 DF L +++G+ + DA ++ Q+S P+ V E G+S SE+ + Sbjct: 64 DFVLFLRQFATLLKSGVSIVDATNILSKQTSSKPLMRALENVEEELLSGMSFSEAAEKQK 123 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 P + + G+L EAL L+ + + K KV++ A + Sbjct: 124 NIFPP-----IFVNMVRAGEATGSLDEALEQLAVQFEKQHDTKQKVKSALAYPIIIAIVA 178 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG---------------HMLLGVAAAFMLIGIMV 178 + + T V ++ L + L+ +A + + I + Sbjct: 179 TVVVIFLLTSVVPMFASMLSDLGGELPAITVFVLTVSNIVSTLWWLILIAVILLAVAIWI 238 Query: 179 MRL 181 MR Sbjct: 239 MRK 241 >gi|146338118|ref|YP_001203166.1| putative pilus assembly protein membrane protein [Bradyrhizobium sp. ORS278] gi|146190924|emb|CAL74929.1| putative pilus assembly protein; putative membrane protein [Bradyrhizobium sp. ORS278] Length = 324 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 59/148 (39%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + + I KR FP+ALD+++ + +G+ + A + + S + EF Sbjct: 166 LSNAISKRQLSIRRAFPDALDLLLICIESGMSIEAAFRRVAIEISSQSIALSEEFTLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + R L+ V + + G L ++L +++ RD + +A Sbjct: 226 ELSYLQDRKVAYENLARRTGLEGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEA 285 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 286 EKKAAALPPKLTVPMILFFLPVLFVVIL 313 >gi|163846103|ref|YP_001634147.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl] gi|222523838|ref|YP_002568308.1| type II secretion system protein [Chloroflexus sp. Y-400-fl] gi|163667392|gb|ABY33758.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl] gi|222447717|gb|ACM51983.1| type II secretion system protein [Chloroflexus sp. Y-400-fl] Length = 311 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 1/163 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + IK+R L P+ALD++ SV AGL A+ + + + + EF+RV++ Sbjct: 147 LDRKIKERKKNILKALPDALDLLCISVEAGLAFDLALQRVAQKWDNELSREFQRVLQDIR 206 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + E++ +V +++V F + + QLG ++S+ L S LR R+ +A+ Sbjct: 207 LGRTRREALRDLVTRTGVEDVQTFVSAVIQADQLGVSMSKILRIQSDQLRVRRRQRAEEA 266 Query: 121 ALSMEAKA-SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162 A K + P ++ P M L G Sbjct: 267 AQKAPVKMLIPMVFLIFPALFVVILGPAVPRIMQALGVMNSGM 309 >gi|88704112|ref|ZP_01101827.1| general secretory pathway protein F [Congregibacter litoralis KT71] gi|88701939|gb|EAQ99043.1| general secretory pathway protein F [Congregibacter litoralis KT71] Length = 405 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 23/182 (12%), Positives = 56/182 (30%), Gaps = 7/182 (3%) Query: 4 LIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHL 61 L R D + ++AG+P+ + ++ +P E + Sbjct: 55 LFSARKKPIKPADIAIFTRQMATMMKAGVPLVQSFDIVGDGLENPSMKELVGGIKNDVSA 114 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L+ S+S+ R+ + + G L L ++ + +KAK++ Sbjct: 115 GGGLALSLSKHPRH-----FDELFCSLVGAGESAGTLETMLDRVATYKEKTEQLKAKIKK 169 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 A + + + V + D L+ + + + + + Sbjct: 170 ALTYPTAVIVVALVVSGILLVKVVPQFAETFSSFGADLPAFTLMVLGLSDFMQAWWFIIV 229 Query: 182 MI 183 + Sbjct: 230 IA 231 Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 38/130 (29%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + AG+P+ DA+ G + + V S I S + + P Sbjct: 275 FSRTLATTFNAGVPLVDALESTAGAAGNAVYSAAILQIRDDVTTGSTLYNSVKSTGLFPN 334 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L E L ++ + + + ME + + + Sbjct: 335 -----MLLQMISIGEESGQLDEMLDKVATHYEEAVDNAVDSLSSLMEPMIMSVLGVLVGG 389 Query: 139 CVSTLVYFTS 148 + + Sbjct: 390 LMIAMYLPIF 399 >gi|90419769|ref|ZP_01227678.1| putative Flp pilus assembly protein TadC, type II/IV secretion system [Aurantimonas manganoxydans SI85-9A1] gi|90335810|gb|EAS49558.1| putative Flp pilus assembly protein TadC, type II/IV secretion system [Aurantimonas manganoxydans SI85-9A1] Length = 332 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 61/158 (38%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +K+ KR +P+ALD+++ V +G + A + + S P+ E V Sbjct: 174 VKNRATKRRLSISRAWPDALDLLLICVESGNSIEAAFRRVAEEIGIQSIPLAEELVLVCA 233 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + L V T + + G L AL LS+ RD++ A Sbjct: 234 ELSYLPDRKVAYDNLATRTGLDGVRTVCTALVQAERYGTPLGTALRTLSQENRDQRMNLA 293 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A ++ K + +I + ++ P + V+ Sbjct: 294 EKKAAALPPKLTVPMIVFFLPVLFAVI--IGPAIIKVM 329 >gi|288559927|ref|YP_003423413.1| type II secretion system protein F GspF2 [Methanobrevibacter ruminantium M1] gi|288542637|gb|ADC46521.1| type II secretion system protein F GspF2 [Methanobrevibacter ruminantium M1] Length = 309 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 76/183 (41%), Gaps = 6/183 (3%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R + + P+ L + +R G+ + +A+ + + P+ E RRV+ +G S Sbjct: 92 ERRREELENSIPDFLRQLASMLRVGMSLENALVDLSEHGNGPLYDELRRVVVEIRMGKSF 151 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ES M + + +++ +I + GG L++ ++++S LR +K + ++ M Sbjct: 152 DESFRNMAKRLDSKDLERSFKIILNAHKSGGGLADVISDVSDDLRAMLILKRERKSSVMM 211 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP------RGHMLLGVAAAFMLIGIMVM 179 + + + + + +M L L+ + +L G ++ Sbjct: 212 SIMFLVLASVVAAPFALGMVGVYSSFMIELNRSSAICQLAPTVALIYLIIHSILAGFLIA 271 Query: 180 RLM 182 +M Sbjct: 272 LIM 274 >gi|83943934|ref|ZP_00956391.1| type II/IV secretion system protein, TadC subfamily protein [Sulfitobacter sp. EE-36] gi|83954507|ref|ZP_00963218.1| type II/IV secretion system protein, TadC subfamily protein [Sulfitobacter sp. NAS-14.1] gi|83840791|gb|EAP79962.1| type II/IV secretion system protein, TadC subfamily protein [Sulfitobacter sp. NAS-14.1] gi|83845181|gb|EAP83061.1| type II/IV secretion system protein, TadC subfamily protein [Sulfitobacter sp. EE-36] Length = 305 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 65/149 (43%), Gaps = 3/149 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + + +R + FP+ALD+++ V AG + + + + S + EF V Sbjct: 146 VTRRVAERKEEITRGFPDALDMMLVCVEAGQSLDQCIVRVARELRASYPALAEEFEIVAY 205 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G ++ M +Q+VS F TV+ + G ++++AL + +RD++ M+A Sbjct: 206 EMKAGKDKVSVLNAMGERCGVQDVSSFVTVLVQSAAFGTSIADALRVYAAEMRDKRVMRA 265 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF 146 + A + K + + + ++ Sbjct: 266 EEAANKLPTKMTLATMMLTVPPLLIILVA 294 >gi|307265041|ref|ZP_07546602.1| Type II secretion system F domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306920026|gb|EFN50239.1| Type II secretion system F domain protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 301 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 80/183 (43%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L ++R K + F + + ++ ++ + A ++ P++ RV+ Sbjct: 115 LDYLGRRRVRKIEEQFKDFVKMLGAYLKMVPSFAGAFIKAAEEAESPLKEHTDRVVRKFE 174 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + ++ + + + + ++ I ++ +LS ++ L +R M K+ Sbjct: 175 LGEDIETALQEL-KNVESTYIKAWADSIIFAVRMKSDLSRVCERTAKKLYERIKMSNKIA 233 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVM 179 A++++AK+ + + + + +SP ++ + P G +++ AA I V+ Sbjct: 234 AMTVQAKSLMVSLAGVMAVMIAVTMMSSPDFVKA-YSTPAGRIVIAYAALSYFISTFYVL 292 Query: 180 RLM 182 + + Sbjct: 293 KKI 295 >gi|325143047|gb|EGC65398.1| Bacterial type II secretion system protein F domain protein [Neisseria meningitidis 961-5945] Length = 402 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 54/183 (29%), Gaps = 6/183 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60 + + +D + ++AGLP+ A ++ + + + Sbjct: 50 RVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRGEVE 109 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SLS + S + F + + GG L L L+ + ++ KV+ Sbjct: 110 QGSSLSRAFSNHPK-----YFDRFYCNLVAAGETGGVLESLLDKLAIYKEKTQAIRKKVK 164 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + L F + V + + + + + M Sbjct: 165 TALTYPVSVIAVAIGLVFVMMIFVLPAFKEVYANMGAELPALTQTVMDMSDFFVSYGWMV 224 Query: 181 LMI 183 L+ Sbjct: 225 LIA 227 >gi|294055120|ref|YP_003548778.1| Type II secretion system F domain protein [Coraliomargarita akajimensis DSM 45221] gi|293614453|gb|ADE54608.1| Type II secretion system F domain protein [Coraliomargarita akajimensis DSM 45221] Length = 383 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 58/190 (30%), Gaps = 18/190 (9%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSL 65 KR L + + AGLP+ A+ Q+ +PV S R V G S Sbjct: 37 KRKKIKLAQLTVFTQQLAAMLEAGLPLVSALEAQEEQTENPVFSIIVRNVRNEVSAGRSF 96 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S++ S P + + GNL+E L S D + +V+ Sbjct: 97 SDACSDYPNAFPN-----LFISMVEAGEASGNLAEILDKTSVYFEDMVKLVRQVKGALTY 151 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND---PRGHML---------LGVAAAFML 173 A + L + V D P ++ + Sbjct: 152 PVAVIGLAVILVNVLLVAVIPVFAEMFTSFGQDLPKPTQMLIDLSAFLKSYIIYIIIATG 211 Query: 174 IGIMVMRLMI 183 +GI ++R I Sbjct: 212 VGIWLLRKFI 221 Score = 38.6 bits (88), Expect = 0.44, Method: Composition-based stats. Identities = 12/134 (8%), Positives = 36/134 (26%), Gaps = 5/134 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + +R+G+P+ + ++ S++ + + +S+ Sbjct: 248 NLSRFCRTYAILMRSGVPILRTLEIVASASNNVFIEASCK-----DISRHISQGGQVSEI 302 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 +S + GN+ L ++ + ME ++ Sbjct: 303 IANDPYFPPMVKHMSKAGEQTGNVDGMLVKVAAFYDAEVEVLVAALTSLMEPLLICFLGV 362 Query: 135 SLPFCVSTLVYFTS 148 + V + Sbjct: 363 VIGGIVMAMFLPIF 376 >gi|325109819|ref|YP_004270887.1| type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] gi|324970087|gb|ADY60865.1| Type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] Length = 333 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 65/147 (44%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + +++R A F+ P+ D++V + +GL + ++ + + + + +E RV Sbjct: 158 LDRAVRRRQATFMKAIPDLFDLLVTCLSSGLTIEASIKRVAEELRLAHPDLANELARVQN 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 HLG+S+ +++ L + + + Q G EAL + ++R ++ +A Sbjct: 218 EIHLGISVVDALKHFAERCNLNPIRSLAMMCEQTRQYGTRAIEALRVHANMMRTQREQRA 277 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + +A K A + + V +V Sbjct: 278 EERARKAAVKILAPTVLLIFPSVFVVV 304 >gi|260461944|ref|ZP_05810189.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] gi|259032191|gb|EEW33457.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] Length = 339 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 58/148 (39%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + + KR +P+ALD+++ V +G+ V A+ + + + EF Sbjct: 169 VNNRATKRKQSIQMAWPDALDLMLICVESGMSVEAALRKVADEIGAQSVALAEEFILTNA 228 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + L+ V S + + G ++ AL L+ RD++ A Sbjct: 229 ELSYLQERKQAYENLASRTGLESVRSVSQALVQAERYGTPVAHALRVLAAESRDQRMNAA 288 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 289 EKKAAALPPKLTVPMILFFLPVLFAIIL 316 >gi|239929198|ref|ZP_04686151.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672] gi|291437532|ref|ZP_06576922.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291340427|gb|EFE67383.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 295 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 61/144 (42%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I+ R P+ LD++ V AGL A+ + + P E R + Sbjct: 134 IWSAIRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVASKYEGPWADELRITLRQMD 193 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+S ++ + + R ++V+ F T + +LG + + L +L++ +R A+ + Sbjct: 194 LGMSRRQAFAELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRK 253 Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144 A KA+ I + L+ Sbjct: 254 AARAVPKATMMITTFMVPATMILL 277 >gi|139438671|ref|ZP_01772155.1| Hypothetical protein COLAER_01156 [Collinsella aerofaciens ATCC 25986] gi|133775751|gb|EBA39571.1| Hypothetical protein COLAER_01156 [Collinsella aerofaciens ATCC 25986] Length = 308 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 85/181 (46%), Gaps = 1/181 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ + P A + S+ +G ++ + + + +PV +EF RV G+S Sbjct: 128 RREQHDAEEAMPEAFTALSMSLASGHSLAQGMRFVGAHAQEPVHTEFLRVAAAIDCGISA 187 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++ ++ + +S + + V + G L++ L+ S ++ +R +K ++ + + Sbjct: 188 TDALDDLLVRIDAPGLSLVTLALKVSQRTGAPLADLLSEASSMVGERIELKRRLDVKTSQ 247 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A+ SA ++ ++P + ++ S + L P G + + A + ++V+R ++ Sbjct: 248 ARMSAHMVAAMPTGMCAVLALLSADFRRGL-ATPAGAGAVVLGLALNAVALVVIRRIMRV 306 Query: 186 D 186 + Sbjct: 307 E 307 >gi|145219378|ref|YP_001130087.1| type II secretion system protein [Prosthecochloris vibrioformis DSM 265] gi|145205542|gb|ABP36585.1| type II secretion system protein [Chlorobium phaeovibrioides DSM 265] Length = 313 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 71/158 (44%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 ++ + +KR + D P+ +D++V +G+ + A+A I + + + EF + Sbjct: 153 LRFITQKRHERMRDSLPDMIDLMVICTESGMGIDSAIARISREMARGNPDLAQEFYLSVL 212 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + E++ + L+++ T+ + G +++AL S +LR R+ +A Sbjct: 213 EIRAGATRIEALRNLALRTRLKDMDDLVTMFVQAHKFGTGIAQALRVQSDMLRSRRTQRA 272 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + A + K + ++ + + L+ P + ++ Sbjct: 273 EEMAAKIPVKMTVPLVLFIFPTL--LMVLLGPAIIQIM 308 >gi|77359347|ref|YP_338922.1| type IV pilus biogenesis protein C [Pseudoalteromonas haloplanktis TAC125] gi|76874258|emb|CAI85479.1| type IV pilus biogenesis protein PilC [Pseudoalteromonas haloplanktis TAC125] Length = 408 Score = 79.0 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 24/180 (13%), Positives = 58/180 (32%), Gaps = 7/180 (3%) Query: 8 RTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65 R K D I + AG+P+ ++ +I +++ + + + G L Sbjct: 62 RLQKITPKDIAIVTRQIATMLMAGVPLIQSIEMIGTGATNKSLGKLMETIADEVKAGQPL 121 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S+++ R R + + G L + ++ + +K+K++ Sbjct: 122 SQALRRHPR-----YFDDLYCDLVASGEQSGALDKIFDRVAIYKEKSEALKSKIKKAMFY 176 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A I + + V + L ++ + + + L+I F Sbjct: 177 PIAVLVIALIVTSILLIFVVPQFQDIFAGFGAELPAFTLFVISISEFMQAYWWIILIIMF 236 Score = 34.3 bits (77), Expect = 7.9, Method: Composition-based stats. Identities = 15/129 (11%), Positives = 39/129 (30%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG+P+ DA+ G S + V + G ++ ++ + Sbjct: 280 RTLSTTFAAGVPLVDALDSAAGASGNAVYRYAILEIKAEVSSGNQMNWAMRN------SK 333 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + G+L L ++ I + + +E A + + Sbjct: 334 IFPDMVIQMVAIGEESGSLDGMLGKVATIYEQEVDDAVDGLSSLLEPMIMAVLGVLVGGL 393 Query: 140 VSTLVYFTS 148 + + Sbjct: 394 IIAMYLPIF 402 >gi|57641787|ref|YP_184265.1| hypothetical protein TK1852 [Thermococcus kodakarensis KOD1] gi|57160111|dbj|BAD86041.1| hypothetical membrane protein, conserved [Thermococcus kodakarensis KOD1] Length = 351 Score = 79.0 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 71/182 (39%), Gaps = 2/182 (1%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K + K+R + P AL I + AG+ +++A+ + P+ EF VI Sbjct: 165 KMVWKRRVREVEKALPYALRHIASLLSAGVGIAEAMLSVAKADYGPLSEEFELVIRDMRT 224 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S E++ + M + VS I + GGNL+E L L+ MK Sbjct: 225 GSSFEEAMLKFEEKMASENVSRVVKQILRAVKFGGNLAEILYKLAEDFAFEYRMKLVEYV 284 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN--VLINDPRGHMLLGVAAAFMLIGIMVM 179 + + ++ ++ +V + M ++ + P ++L V M I+ M Sbjct: 285 QKVNGISFVYMFMTIVMPTMLVVGILAGSLMARKLIFSVPMIAIMLVVVFPMMSFMIINM 344 Query: 180 RL 181 Sbjct: 345 IK 346 >gi|121534350|ref|ZP_01666174.1| type II secretion system protein [Thermosinus carboxydivorans Nor1] gi|121307120|gb|EAX48038.1| type II secretion system protein [Thermosinus carboxydivorans Nor1] Length = 308 Score = 79.0 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 69/157 (43%), Gaps = 2/157 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I R D P+ LD++ SV AGL A+A + + + EF R ++ Sbjct: 150 LNRKIAMRKRSIQKDLPDVLDLLTVSVEAGLGFDGALAKLSEKMKGALVDEFTRALQEMR 209 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ E++ M + ++S F+T + QLG ++ + L S +R+++ + + Sbjct: 210 MGVPRREALRAMGLRCDVPDLSLFTTSLIQADQLGVSIGQVLRVQSASMREKRRQRTQEL 269 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 A+ K ++ + + +V P + + + Sbjct: 270 AMKAPVKMLLPLVFFIFPAIFVVV--LGPAIIQIFLT 304 >gi|84498181|ref|ZP_00996978.1| probable secretion system protein TadC [Janibacter sp. HTCC2649] gi|84381681|gb|EAP97564.1| probable secretion system protein TadC [Janibacter sp. HTCC2649] Length = 301 Score = 79.0 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 63/151 (41%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + F +ALD++ V +G A+ + + P+ EF RV+ +G++ Sbjct: 149 RRQEQLRKGFADALDMLTVCVESGQGFDAALGQVARNVTGPIAGEFARVLSEFQIGMTRG 208 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ M EV F + + +LG ++ L ++ +R + A+ +A + Sbjct: 209 QAFQGMAERNTSPEVKNFVSALVQADRLGVPIAGVLREQTKEMRVVRRQLAEEKAQKVTV 268 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 K ++ + + ++ + + L + Sbjct: 269 KVVFPVLLCIFPVIFVVILGPAAINIYDLFS 299 >gi|329928965|ref|ZP_08282775.1| type II secretion system protein F domain protein [Paenibacillus sp. HGF5] gi|328937217|gb|EGG33644.1| type II secretion system protein F domain protein [Paenibacillus sp. HGF5] Length = 285 Score = 79.0 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 82/193 (42%), Gaps = 8/193 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFRR 54 + ++++R F AL + S+ AG V + V S + E + Sbjct: 94 QFMLERRRKTLNLHFKQALYSLSSSLSAGRSVENGFRDAVQDLLLLDPGGSSDLIFELKV 153 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 ++ G + ++ R +++++ F+ V S + GG+L E + S ++ ++ + Sbjct: 154 IVSRLEYGEPIEAALQDFARRAGMEDLTNFADVFSTCKRTGGDLVEVVRRTSSVIGEKLD 213 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 ++ ++ + + + + + + PF + + TSP YM + G M+ A A + Sbjct: 214 IQQEIAVMIAQKRFESKALLAAPFLLLLFMNMTSPDYMEPMY-SGSGIMISTFALAALGG 272 Query: 175 GIMVMRLMINFDV 187 + + M+N V Sbjct: 273 CFLWINKMMNIKV 285 >gi|313902406|ref|ZP_07835809.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM 13965] gi|313467337|gb|EFR62848.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM 13965] Length = 326 Score = 79.0 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 73/155 (47%), Gaps = 2/155 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K +R + P+ +D++ +V AGL + AV + + PV +EFR+ ++ Sbjct: 169 LKARATRRKRQLARALPDVMDLLSVAVEAGLGLDGAVQKVTEKFPAPVSTEFRQYLKELR 228 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+S E++ + L E+ F+ + +LG +L+ L + LR ++ +A+ Q Sbjct: 229 LGVSREEALRSLADRAELPELRSFAAAVIQADRLGVSLARVLRVQAEQLRFQRKQRAEEQ 288 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A+ K ++ + + ++ P + +L Sbjct: 289 AMKTPIKMLLPLVLFIFPTLFIVL--LGPALIQIL 321 >gi|54302281|ref|YP_132274.1| tight adherence TadC-like transmembrane protein [Photobacterium profundum SS9] gi|46915703|emb|CAG22474.1| hypothetical putative tight adherence TadC-related transmembrane protein [Photobacterium profundum SS9] Length = 322 Score = 79.0 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 ++ KKR + FP+ALD++V + AGL A+ + + + SE + V Sbjct: 161 LQKKAKKRIQTLSNAFPDALDLLVVTTEAGLGFLAALNRVANEIDALSPELSSELQIVCR 220 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 LG+ L ++S+ + L E+ ++IS +LG ++ + L + RDR+ KA Sbjct: 221 KVRLGVPLPIALSQFIERTGLLELQGLVSIISQSVKLGSSMGDTLREYAIEFRDRRMQKA 280 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A + K ++ + T+ P + VL Sbjct: 281 EEEAAKIGTKMIFPLVTCIWPGFFTV--AIGPAIIAVL 316 >gi|261401635|ref|ZP_05987760.1| 3-isopropylmalate dehydrogenase [Neisseria lactamica ATCC 23970] gi|296313613|ref|ZP_06863554.1| 3-isopropylmalate dehydrogenase [Neisseria polysaccharea ATCC 43768] gi|313667735|ref|YP_004048019.1| pilus-assembly protein [Neisseria lactamica ST-640] gi|269208274|gb|EEZ74729.1| 3-isopropylmalate dehydrogenase [Neisseria lactamica ATCC 23970] gi|296839851|gb|EFH23789.1| 3-isopropylmalate dehydrogenase [Neisseria polysaccharea ATCC 43768] gi|309378660|emb|CBX22731.1| pilus assembly protein PilG [Neisseria lactamica Y92-1009] gi|313005197|emb|CBN86630.1| pilus-assembly protein [Neisseria lactamica 020-06] Length = 410 Score = 79.0 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 23/183 (12%), Positives = 54/183 (29%), Gaps = 6/183 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60 + + +D + ++AGLP+ A ++ + + + Sbjct: 58 RVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRSNVE 117 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +LS + S + F + + GG L L L+ + ++ KV+ Sbjct: 118 QGSTLSRAFSNHPK-----YFDRFYCNLVAAGETGGVLESLLDKLAVYKEKTQAIRKKVK 172 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + L F + V + + + + + M Sbjct: 173 TALTYPVSVIAVAIGLVFVMMIFVLPAFKEVYANMGAELPALTQTVMDMSDFFVSYGWMV 232 Query: 181 LMI 183 L+ Sbjct: 233 LIA 235 >gi|254511547|ref|ZP_05123614.1| type II/IV secretion system protein, TadC subfamily [Rhodobacteraceae bacterium KLH11] gi|221535258|gb|EEE38246.1| type II/IV secretion system protein, TadC subfamily [Rhodobacteraceae bacterium KLH11] Length = 325 Score = 79.0 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 73/158 (46%), Gaps = 4/158 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + +++R ++ FP+ LD+++ V AG + A+ + + + EF V Sbjct: 165 ITRRVEERKEAIVNGFPDTLDLMLVCVEAGQSLDQAIVRVAAEMKASYPDIALEFEVVAY 224 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +Q+VS F TV+ + G ++++AL S +RD++ M+A Sbjct: 225 EMKAGKEKDTVLRDFATRCGVQDVSAFVTVMIQSAAFGTSIADALRVYSDEMRDKRVMRA 284 Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154 + A + K + A ++ ++P + LV ++ G M Sbjct: 285 EEAANKLPTKMTLATMMLTVPPLLVILVGPSAKGIMAF 322 >gi|295690793|ref|YP_003594486.1| type II secretion system F domain-containing protein [Caulobacter segnis ATCC 21756] gi|295432696|gb|ADG11868.1| Type II secretion system F domain protein [Caulobacter segnis ATCC 21756] Length = 327 Score = 79.0 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 62/148 (41%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + ++ +KR + FP++LD+++ V +G+ V A+ + + S + E + Sbjct: 166 ITNIAQKRRESIVAAFPDSLDLLLICVESGMSVEAAIQKVSSEIGAQSMELAEELSLLTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + R V +T + + G L AL +++ R+ + A Sbjct: 226 ELSYLPERRQAYENLARRTNHPGVKSVATAMIQAERYGTPLGAALRVMAKENRELRLSSA 285 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ AK + +I + ++ Sbjct: 286 EKKATALPAKLTVPMILFFLPVLFIVIL 313 >gi|163814843|ref|ZP_02206231.1| hypothetical protein COPEUT_00993 [Coprococcus eutactus ATCC 27759] gi|158449782|gb|EDP26777.1| hypothetical protein COPEUT_00993 [Coprococcus eutactus ATCC 27759] Length = 246 Score = 79.0 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 75/187 (40%), Gaps = 6/187 (3%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRVIETQH 60 + K +F L + ++ AG + A + + ++ E + +I Sbjct: 60 RMQKKLNMEFKEMLLSLAANMAAGYSMEKAFVPVYQEMEGLYQGRSYIQGEIKMIIAGLE 119 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + + + L +V F+ V +V + GGNL + + + + + +R ++ ++ Sbjct: 120 MNTDMKILLKNFAERSGLDDVMEFAKVSAVAGRSGGNLIKMMKKMVQTIEERLEVEDEID 179 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + I+ ++PF + + +PGYMN L + G + V + + + R Sbjct: 180 TMVTAKRMEYNIMSAMPFVIVLYMRVCNPGYMNALYGNVFGIAAMSVCLIVIFLMVAWGR 239 Query: 181 LMINFDV 187 + N V Sbjct: 240 KITNIRV 246 >gi|187919329|ref|YP_001888360.1| type II secretion system protein [Burkholderia phytofirmans PsJN] gi|187717767|gb|ACD18990.1| type II secretion system protein [Burkholderia phytofirmans PsJN] Length = 318 Score = 79.0 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 70/148 (47%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 M+ L++ R K +D P+ALD++ V AGL + A+ + + S ++ EF V+ Sbjct: 150 MRRLVESRQRKLFEDLPDALDLMTVCVEAGLGLDAAMLRVTQEIGVKSHALKDEFDMVLL 209 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G +++ + ++++ + ++ + G ++ ++L + LR ++ ++A Sbjct: 210 ELRAGSGREKALRNLSLRTGVEDIDTLAAMLIQADRFGTSVGDSLRVYTDNLRTKRRLRA 269 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + QA + K ++ + + ++ Sbjct: 270 EEQAAKIALKLLFPLMFFIFPTLLAVLV 297 >gi|325130912|gb|EGC53641.1| Bacterial type II secretion system protein F domain protein [Neisseria meningitidis OX99.30304] gi|325198977|gb|ADY94433.1| Bacterial type II secretion system protein F domain protein [Neisseria meningitidis G2136] gi|325203446|gb|ADY98899.1| Bacterial type II secretion system protein F domain protein [Neisseria meningitidis M01-240355] gi|325205410|gb|ADZ00863.1| Bacterial type II secretion system protein F domain protein [Neisseria meningitidis M04-240196] Length = 402 Score = 79.0 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 54/183 (29%), Gaps = 6/183 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60 + + +D + ++AGLP+ A ++ + + + Sbjct: 50 RVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRGEVE 109 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SLS + S + F + + GG L L L+ + ++ KV+ Sbjct: 110 QGSSLSRAFSNHPK-----YFDRFYCNLVAAGETGGVLESLLDKLAIYKEKTQAIRKKVK 164 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + L F + V + + + + + M Sbjct: 165 TALTYPVSVIAVAIGLVFVMMIFVLPAFKEVYANMGAELPALTQTVMDMSDFFVSYGWMV 224 Query: 181 LMI 183 L+ Sbjct: 225 LIA 227 >gi|294012231|ref|YP_003545691.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S] gi|292675561|dbj|BAI97079.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S] Length = 322 Score = 79.0 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 72/149 (48%), Gaps = 3/149 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + +R + + FP+ALD+++ V AGL + A+ + + S V + +V+ Sbjct: 158 ISAKASRRQEEIVHGFPDALDLMLVCVEAGLGLEAAMDRVGRELALSHPLVSAALGKVVL 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S +++ RM + + E+ F+T++ QLG ++ + L + +R+++ M+A Sbjct: 218 ELRAGRSRQDALRRMADDVDVDEIRSFATLLIQSDQLGSSVGQTLRVYAAEMREKRRMRA 277 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF 146 + +A + S ++ + + ++ Sbjct: 278 EEKAHRLPVLLSVPLVACMLPVMIGVLML 306 >gi|315649138|ref|ZP_07902229.1| Type II secretion system F domain protein [Paenibacillus vortex V453] gi|315275454|gb|EFU38811.1| Type II secretion system F domain protein [Paenibacillus vortex V453] Length = 285 Score = 79.0 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 82/193 (42%), Gaps = 8/193 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-------SSDPVRSEFRR 54 + ++ +R F AL + S+ AG V + V +S + E + Sbjct: 94 RFMLDRRRKTLNLHFKQALYSLSSSLSAGRSVENGFRDAVQDLLLLDPGASSDLIFELKV 153 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 ++ G + ++ R +++++ F+ V S + GG+L E + S ++ ++ + Sbjct: 154 IVSRLEYGEPIEVALQDFARRAGMEDITNFADVFSTCKRTGGDLVEVVRRTSSVIGEKLD 213 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 ++ ++ + + + + + + PF + + TSP YM + G ++ A A + Sbjct: 214 IQQEISVMIAQKRFESKALLAAPFLLLLFMNMTSPDYMEPMY-SGAGILISTFALAALGG 272 Query: 175 GIMVMRLMINFDV 187 + + M+N V Sbjct: 273 CFLWISKMMNIKV 285 >gi|239979681|ref|ZP_04702205.1| hypothetical protein SalbJ_09602 [Streptomyces albus J1074] Length = 309 Score = 79.0 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 59/144 (40%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++ R P+ LD++ V +GL A+ + + P E R + Sbjct: 148 IWQAVRDRREVIDRTLPDFLDVLAVVVSSGLGFRQALDRVAERYEGPWADELRITLRQMD 207 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+S ++ + R ++V+ F + + +LG +++ L ++ +R ++ + Sbjct: 208 MGVSRRQAFDELRRRNSSEQVAQFVSALQQGEELGSPIADTLIQIATDMRRTDAQNSRRR 267 Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144 A KA+ + L L+ Sbjct: 268 AAKTIPKATMVTLVFLLPATMILI 291 >gi|307293454|ref|ZP_07573300.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] gi|306881520|gb|EFN12736.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] Length = 330 Score = 79.0 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 60/148 (40%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + + ++KR+A P+ALD++V AGL V A + + + + + EF Sbjct: 172 IDNKVQKRSAAIRKGLPDALDLLVICAEAGLTVDAAFSRVARELGKAYPELGDEFHLTAI 231 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + L V T + + G L+ AL LS R + M+A Sbjct: 232 ELSFLTERRMAFENLATRVKLDAVKGVVTTMIQTEKYGTPLASALRVLSAEFRHERMMRA 291 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A + A + +I + + ++ Sbjct: 292 EEKAARLPAIMTVPLILFILPTLFVVIL 319 >gi|83749807|ref|ZP_00946779.1| PilC [Ralstonia solanacearum UW551] gi|207744384|ref|YP_002260776.1| fimbrial assembly protein [Ralstonia solanacearum IPO1609] gi|83723518|gb|EAP70724.1| PilC [Ralstonia solanacearum UW551] gi|206595789|emb|CAQ62716.1| fimbrial assembly protein [Ralstonia solanacearum IPO1609] Length = 421 Score = 79.0 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 22/180 (12%), Positives = 55/180 (30%), Gaps = 7/180 (3%) Query: 2 KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ 59 K R K D + ++AG+P+ +V +I ++ + Sbjct: 69 KRRRAARGKKITPKDVAYFTRQLSTMLKAGVPLLQSVDIIARGHANPNFTQLLTEIRVDI 128 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G S++++ R + + + GG L L LS + +KA++ Sbjct: 129 ESGSSMAQAFRRHPK-----YFDSLYCNLIDAGEQGGILDALLERLSMYMEKSIALKAQI 183 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ + + + + + V L+ + + + + Sbjct: 184 KSAMIYPISVLTVAFLVTVVLMIFVVPAFKNVFASFGATLPAPTLVVMNISDFFVKWWYI 243 >gi|207721487|ref|YP_002251927.1| fimbrial assembly protein [Ralstonia solanacearum MolK2] gi|206586647|emb|CAQ17233.1| fimbrial assembly protein [Ralstonia solanacearum MolK2] Length = 421 Score = 79.0 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 22/180 (12%), Positives = 55/180 (30%), Gaps = 7/180 (3%) Query: 2 KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ 59 K R K D + ++AG+P+ +V +I ++ + Sbjct: 69 KRRRAARGKKITPKDVAYFTRQLSTMLKAGVPLLQSVDIIARGHANPNFTQLLTEIRVDI 128 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G S++++ R + + + GG L L LS + +KA++ Sbjct: 129 ESGSSMAQAFRRHPK-----YFDSLYCNLIDAGEQGGILDALLERLSMYMEKSIALKAQI 183 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ + + + + + V L+ + + + + Sbjct: 184 KSAMIYPISVLTVAFLVTVVLMIFVVPAFKNVFASFGATLPAPTLVVMNISDFFVKWWYI 243 >gi|56477520|ref|YP_159109.1| type II secretion system protein [Aromatoleum aromaticum EbN1] gi|56313563|emb|CAI08208.1| Bacterial type II secretion system protein, probably involved in Flp pilus synthesis [Aromatoleum aromaticum EbN1] Length = 315 Score = 79.0 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 68/165 (41%), Gaps = 4/165 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + LI R + + FP+ALD++ V AGL V A+ + + S+ + E V Sbjct: 147 LNRLIFVRQREIFETFPDALDLMTVCVEAGLGVEAALVRVADEMQHKSEALAEELHLVTL 206 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL + ++ + ++EV F ++ + G +++ +L S +LR R+ +A Sbjct: 207 ELRAGLERARALRNLAARTGVEEVEGFVAMVIQAERFGTSIATSLRIHSDMLRTRRRQRA 266 Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + A + I P + L+ +L+ G Sbjct: 267 EEAAAKIALKLLFPLIFFIFPSLMLVLLGPAMIQVYRILLPTMAG 311 >gi|325964118|ref|YP_004242024.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans Sphe3] gi|323470205|gb|ADX73890.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans Sphe3] Length = 292 Score = 79.0 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 60/139 (43%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR + + PN LD ++ SV AGL A+A G + E R ++ +G Sbjct: 142 KRQQEIELELPNTLDQLLISVEAGLGFEAAMARAGGYGDGALSQELMRTLQDIQVGRPRQ 201 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + +Q++ F + + G +++ L ++ R ++ +A+ +A+ + Sbjct: 202 DAYQALADRSSVQDLRSFVRAVIQADKYGIGIAKVLRTQAKQARVKRRQRAEEKAMKLPV 261 Query: 127 KASAWIIGSLPFCVSTLVY 145 K ++ + + ++ Sbjct: 262 KVLFPLLLCIFPVLFIVLL 280 >gi|114331042|ref|YP_747264.1| type II secretion system protein [Nitrosomonas eutropha C91] gi|114308056|gb|ABI59299.1| type II secretion system protein [Nitrosomonas eutropha C91] Length = 406 Score = 79.0 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 18/167 (10%), Positives = 47/167 (28%), Gaps = 6/167 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 D + +++G+P+ A ++ S+ V + G SL+ + + Sbjct: 65 DKDITLFTRQLATMMKSGVPLLQAFDIVGKGHSNRAVGKLLMDIKSEVETGSSLANAFKK 124 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + G L L L+ + +K K+++ + Sbjct: 125 HPL-----YFDSLFCNLVAAGEAAGILDNLLDRLATYKEKIQAIKGKIKSALFYPVSIIV 179 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + + V D L+ + + + Sbjct: 180 VAFIITAVIMIFVIPAFKELFQGFGADLPAPTLMVMTISDFFVAYWW 226 Score = 40.5 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 16/128 (12%), Positives = 41/128 (32%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + AG+P+ +A+ + G + + V E + ++ +S S + M Sbjct: 277 RTLSTMFAAGVPLVEALNSVAGAAGNQVYYEATK-----NIQNEVSTGSSLVDAMMATNV 331 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + G+L L+ ++ + + + ME + + V Sbjct: 332 FPSMVLQMVSIGEESGSLDAMLSKIADFFEAEVDDAVEALSSLMEPLIMVVLGTLIGGMV 391 Query: 141 STLVYFTS 148 + Sbjct: 392 VAMYLPIF 399 >gi|283778972|ref|YP_003369727.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283437425|gb|ADB15867.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 289 Score = 79.0 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 93/182 (51%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +L ++AK +A+D+++ ++ AG V+ A+A + +SS P++ + ++ LG Sbjct: 105 YLATMKSAKLERQLADAIDLMIGALGAGTGVTSAMAAAIEESSYPLKGQLEDLLARIRLG 164 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + +PL+ FS+ ++V ++GG+L+ LA+ R +RDR + ++Q+ Sbjct: 165 DDPQAVFRSLSQRIPLETFLLFSSTLAVHWEVGGSLAPTLASAGRTIRDRIEIGRRIQSN 224 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 +++ S I L + ++ +V+ SP M +N G ++ + +GI+ M + Sbjct: 225 IAQSQVSTVFILLLTYFIAAVVWRNSPEQMQAFLNTDMGGSVVAGSMVLQAVGIVWMSAI 284 Query: 183 IN 184 Sbjct: 285 SK 286 >gi|304386512|ref|ZP_07368800.1| 3-isopropylmalate dehydrogenase [Neisseria meningitidis ATCC 13091] gi|304339341|gb|EFM05413.1| 3-isopropylmalate dehydrogenase [Neisseria meningitidis ATCC 13091] Length = 410 Score = 79.0 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 54/183 (29%), Gaps = 6/183 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60 + + +D + ++AGLP+ A ++ + + + Sbjct: 58 RVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRGEVE 117 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SLS + S + F + + GG L L L+ + ++ KV+ Sbjct: 118 QGSSLSRAFSNHPK-----YFDRFYCNLVAAGETGGVLESLLDKLAIYKEKTQAIRKKVK 172 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + L F + V + + + + + M Sbjct: 173 TALTYPVSVIAVAIGLVFVMMIFVLPAFKEVYANMGAELPPLTQTVMDMSDFFVSYGWMV 232 Query: 181 LMI 183 L+ Sbjct: 233 LIA 235 >gi|153008064|ref|YP_001369279.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188] gi|151559952|gb|ABS13450.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188] Length = 333 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 61/157 (38%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + KR +P+ALD+++ V +G+ A + + S + E Sbjct: 169 VSNRATKRKQSIRRAWPDALDLMLICVESGMSTEAAFRRVADEIGIQSVELAEELMLTNA 228 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + L V + + + G +S+AL LS+ RD + + A Sbjct: 229 ELSFLPERRQAYENLANRTGLDPVKSVTQALIQAERYGTPVSQALRTLSQESRDLRLLDA 288 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + +A ++ K + +I + ++ P ++ + Sbjct: 289 EKKAAALPPKLTVPMIVFFLPVLFIVI--LGPAFIQI 323 >gi|261363883|ref|ZP_05976766.1| 3-isopropylmalate dehydrogenase [Neisseria mucosa ATCC 25996] gi|288567880|gb|EFC89440.1| 3-isopropylmalate dehydrogenase [Neisseria mucosa ATCC 25996] Length = 413 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 69/187 (36%), Gaps = 8/187 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60 K K+ +D + ++AGLP+ A ++ S+ + +V Sbjct: 61 KVKATKKRRITQEDITVFTRQLATMMKAGLPLMQAFEIVARGHSNPSMTEMLMQVRADVE 120 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +L +S ++ + F + + GG L L L+ + +K KV+ Sbjct: 121 QGSALGKSFAKYPK-----YFDRFYCNLIAAGEAGGVLESLLDKLAVYKEKTQAIKKKVK 175 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + +L F + V + + G +++ ++ F+ G ++ Sbjct: 176 TALTYPISIVVVAIALIFVMMRWVLPEFGKVYAGMGAELPGLTQIVMDISKIFVEYGWLM 235 Query: 179 MRLMINF 185 + ++I F Sbjct: 236 IVMVIAF 242 >gi|227818621|ref|YP_002822592.1| TadC, component of type IV pilus [Sinorhizobium fredii NGR234] gi|36958877|gb|AAQ87302.1| Tyrosine phenol-lyase [Sinorhizobium fredii NGR234] gi|227337620|gb|ACP21839.1| TadC, component of type IV pilus [Sinorhizobium fredii NGR234] Length = 323 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 61/148 (41%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +++ I KR +P ALD+++ +V +G+ + A + + S V E Sbjct: 165 IRNRITKRQQAIRRAWPEALDLLLITVESGMGIESAFRKVGEEIGAQSPEVAEEILLTTA 224 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + + ++ V T + + G L +AL +++ RD + +A Sbjct: 225 ELSYLQDRRQAFENLGQRTGVEGVRAVVTSLIQAEKYGTPLGQALRVMAQENRDMRMSEA 284 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 285 EKKAAALPPKLTVPMIVFFLPVLFAVIV 312 >gi|639482|gb|AAA85695.1| PilG [Neisseria meningitidis] Length = 410 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 53/183 (28%), Gaps = 6/183 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60 + + +D + + AGLP+ A ++ + + + Sbjct: 58 RVKTSSKRKITQEDITVFTRQLSTMINAGLPLMQAFEIVARGHGNPSMTEMLMEIRGQVE 117 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SLS + S + F + + GG L L L+ + ++ KV+ Sbjct: 118 QGSSLSRAFSNHPK-----YFDRFYCNLVAAGETGGVLESLLDKLAIYKEKTQAIRKKVK 172 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + L F + V + + + + + M Sbjct: 173 TALTYPVSVIAVAIGLVFVMMIFVLPAFKEVYANMGAELPALTQTVMDMSDFFVSYGWMV 232 Query: 181 LMI 183 L+ Sbjct: 233 LIA 235 >gi|187927682|ref|YP_001898169.1| type II secretion system protein [Ralstonia pickettii 12J] gi|187724572|gb|ACD25737.1| type II secretion system protein [Ralstonia pickettii 12J] Length = 320 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 70/164 (42%), Gaps = 4/164 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + ++ R ++FP+ LD++ V AGL + A+ + + + E + Sbjct: 153 LARKVEHRQRDVFEEFPDMLDLLTVCVEAGLGLDAAMMRVSDELALRCPVMAEEMELTLL 212 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G ++++ + +++V F++++ + G +L+++L LS +LR ++ M+A Sbjct: 213 ELRSGFPKEKALTNLALRTGVEDVDRFASMLIQADRFGTSLADSLRVLSDMLRTKRRMRA 272 Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 + QA + I P + L+ VL+ Sbjct: 273 EEQAAKIALKLLFPLIFFIFPTLLLVLLGPAFIQIYRVLLPTMT 316 >gi|103486613|ref|YP_616174.1| type II secretion system protein [Sphingopyxis alaskensis RB2256] gi|98976690|gb|ABF52841.1| type II secretion system protein [Sphingopyxis alaskensis RB2256] Length = 347 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 62/148 (41%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + ++ +KRT P+ALD++V AGL V A + + + + + EF Sbjct: 181 VDNMRQKRTDAIRKGLPDALDLLVICAEAGLTVDSAFSRVSKELGRAYPELGEEFALTSI 240 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + + L+ V T + + G L+ AL LS R+ + M+A Sbjct: 241 ELGFLTERRQAFENLAYRVNLESVKGVVTTMIQTEKYGTPLASALRVLSAEFRNERMMRA 300 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A + A + +I + + ++ Sbjct: 301 EEKAARLPAIMTVPLILFILPVLFIVIL 328 >gi|316933034|ref|YP_004108016.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1] gi|315600748|gb|ADU43283.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1] Length = 324 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 60/148 (40%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 +K+ I+KR FP+ALD+++ + +G+ + A + + + EF Sbjct: 166 LKNAIQKRQLSIKRAFPDALDLLLICIESGMSIEAAFRRVSIEIGSQSIPLAEEFTLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + + L V + + G L ++L +++ RD + +A Sbjct: 226 ELSYLQDRKQAYENLAQRTGLDGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEA 285 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 286 EKKAAALPPKLTVPMIVFFLPVLFVVIL 313 >gi|20808466|ref|NP_623637.1| hypothetical protein TTE2067 [Thermoanaerobacter tengcongensis MB4] gi|20517084|gb|AAM25241.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis MB4] Length = 309 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 79/182 (43%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + +KR KF F A+ I ++ + +A+ ++ + +P++ E ++++ Sbjct: 121 LEKIAQKRYVKFNLQFAEAVQDIADYLKISGNIVNALEKVIDTTENPLKDEIKKIVAKVD 180 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+SL E++ + V + + Q+ N ++ +S +++R K+ Sbjct: 181 AGISLYEALKDFAKESGSPLVEAWVDSMVFAGQMKANTADICQKMSAKIKERIRQNNKIS 240 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + K++ +I ++ + Y + P Y +LL + ++++ + V R Sbjct: 241 SFMKSTKSTVIMIIAITILLMLSTYTSGPMYAEAFTTTAGKLVLLYIIISYVVTTVFVFR 300 Query: 181 LM 182 + Sbjct: 301 AI 302 >gi|218461576|ref|ZP_03501667.1| putative component of pilus protein [Rhizobium etli Kim 5] Length = 165 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 61/148 (41%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + + KR +P+ALD+++ V +G+ + A+ + + S + E Sbjct: 7 ISNRMGKRQHSIKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPALAEEMVLTTA 66 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + ++ V + + + G +++AL L++ RD + +A Sbjct: 67 ELSFLPDRRVALENLATRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEA 126 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 127 EKKAAALPPKLTVPMILFFLPVLIAVIL 154 >gi|325111219|ref|YP_004272287.1| type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] gi|324971487|gb|ADY62265.1| Type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] Length = 461 Score = 78.6 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 66/158 (41%), Gaps = 3/158 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV--RSEFRRVIET 58 ++ KR + P+ +D++ V G+ + A+A + + SD +E R++ Sbjct: 284 VRQRAAKRRREIEQALPDVIDLLNMCVSQGMTLRPALARVSWEISDTYPAMAEELRIVAE 343 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 Q +L +++ M + + E+ +T++ ++G N+S++L S +R +A Sbjct: 344 QANLGTLEHALNNMNERVDVPELHSLTTLLIQTERMGTNVSDSLTEYSDGMRATLQQRAD 403 Query: 119 VQALSM-EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 +A + ++ +P L+ + Sbjct: 404 QKANAATFKLLFPTVLCLMPAVYFFLLGPAVVELSDFF 441 >gi|295836764|ref|ZP_06823697.1| integral membrane protein [Streptomyces sp. SPB74] gi|295826195|gb|EFG64730.1| integral membrane protein [Streptomyces sp. SPB74] Length = 300 Score = 78.6 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 62/144 (43%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +++R A P+ LD++ V AGL A+ + + P E R + Sbjct: 139 IWQAVRERRAVIDRTLPDFLDVLAVVVSAGLGFRQALERVAEKYEGPWADELRITLRQMD 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+S ++ + R ++V+ F + + +LG ++E L ++ +R +A+ + Sbjct: 199 MGVSRRQAFDELRRRNNSEQVAQFVSALQQGEELGSPIAETLIQIANDMRRTDAQQARRR 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144 A KA+ + + L+ Sbjct: 259 AAKTIPKATMATLVFMLPATMILI 282 >gi|329912557|ref|ZP_08275772.1| Type IV fimbrial assembly protein PilC [Oxalobacteraceae bacterium IMCC9480] gi|327545587|gb|EGF30755.1| Type IV fimbrial assembly protein PilC [Oxalobacteraceae bacterium IMCC9480] Length = 410 Score = 78.6 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 17/170 (10%), Positives = 49/170 (28%), Gaps = 6/170 (3%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSE 67 D + ++AG+P+ + ++ ++ + + G SL++ Sbjct: 66 KKITDKDISLFTRQLATMMKAGVPLLQSFDIVAKGHANPSMSKLIMEIRSDVETGTSLNQ 125 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + + + + G L + L L+ +K K+++ Sbjct: 126 AFRKFPL-----YFDPLFCNLVGAGEQAGILEDLLTRLAIYKEKTIAIKGKIKSALFYPI 180 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + + + V D L+ +A + + Sbjct: 181 SILVVAFVVTAVIMIFVVPAFKEVFKSFGADLPAPTLVVMAISDFFVAYW 230 >gi|148556413|ref|YP_001263995.1| type II secretion system protein [Sphingomonas wittichii RW1] gi|148501603|gb|ABQ69857.1| type II secretion system protein [Sphingomonas wittichii RW1] Length = 302 Score = 78.6 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 43/177 (24%), Positives = 87/177 (49%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 + ++D P +D + + + G + A+A + SS V + I LG L E++ Sbjct: 125 EQLIEDLPFFIDAVRQLIAVGNSLPQALARALPASSPAVHAYLGPAIRRIELGAPLGEAL 184 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 ++ + L E+S ++ I V + GG L+ L+N++ ++R+R + ++ A + E + S Sbjct: 185 QQVATRLHLTEISMLASAIRVNIRYGGPLTHILSNIAALIRERGRVAREIAAATAEMRVS 244 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 A ++ +P ++ ++ Y++ ++ RG L VA A LIG M + D Sbjct: 245 AKLLAVMPLILAAFFLLSNHAYLDFFLDPQRGRTLALVAVALQLIGAAAMARIQRLD 301 >gi|332798625|ref|YP_004460124.1| Type II secretion system F domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696360|gb|AEE90817.1| Type II secretion system F domain protein [Tepidanaerobacter sp. Re1] Length = 307 Score = 78.6 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 61/156 (39%), Gaps = 1/156 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K I KR P+ LD++ SV AGL A++ +V P+ E Sbjct: 149 LKRNIIKRKTAIYHQLPDTLDLLSVSVSAGLGFDQALSYVVEHMEGPLIQELDTTQREIS 208 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ E++ R+ E+ F I+ +LG ++ + + +R + Q Sbjct: 209 MGIPRKEALERLAARCECDEIYIFVGAINQADELGASIKNVMETQAAAIRLTHKQNVEEQ 268 Query: 121 ALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVL 155 A + K ++ LP ++ P ++ L Sbjct: 269 AQKLSVKMMVPMVLFILPVTFIIILGPAIPSVISAL 304 >gi|59801994|ref|YP_208706.1| PilG [Neisseria gonorrhoeae FA 1090] gi|194099551|ref|YP_002002681.1| PilG [Neisseria gonorrhoeae NCCP11945] gi|239999756|ref|ZP_04719680.1| PilG [Neisseria gonorrhoeae 35/02] gi|240014913|ref|ZP_04721826.1| PilG [Neisseria gonorrhoeae DGI18] gi|240017361|ref|ZP_04723901.1| PilG [Neisseria gonorrhoeae FA6140] gi|240081504|ref|ZP_04726047.1| PilG [Neisseria gonorrhoeae FA19] gi|240113783|ref|ZP_04728273.1| PilG [Neisseria gonorrhoeae MS11] gi|240116517|ref|ZP_04730579.1| PilG [Neisseria gonorrhoeae PID18] gi|240118741|ref|ZP_04732803.1| PilG [Neisseria gonorrhoeae PID1] gi|240121983|ref|ZP_04734945.1| PilG [Neisseria gonorrhoeae PID24-1] gi|240124280|ref|ZP_04737236.1| PilG [Neisseria gonorrhoeae PID332] gi|240126491|ref|ZP_04739377.1| PilG [Neisseria gonorrhoeae SK-92-679] gi|240128954|ref|ZP_04741615.1| PilG [Neisseria gonorrhoeae SK-93-1035] gi|254494543|ref|ZP_05107714.1| pilus-assembly protein [Neisseria gonorrhoeae 1291] gi|260439726|ref|ZP_05793542.1| PilG [Neisseria gonorrhoeae DGI2] gi|268595569|ref|ZP_06129736.1| pilus assembly protein pilG [Neisseria gonorrhoeae 35/02] gi|268597604|ref|ZP_06131771.1| pilus assembly protein pilG [Neisseria gonorrhoeae FA19] gi|268599855|ref|ZP_06134022.1| type IV pilus assembly protein [Neisseria gonorrhoeae MS11] gi|268602190|ref|ZP_06136357.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID18] gi|268604455|ref|ZP_06138622.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID1] gi|268682909|ref|ZP_06149771.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID332] gi|268685075|ref|ZP_06151937.1| type IV pilus assembly protein [Neisseria gonorrhoeae SK-92-679] gi|268687339|ref|ZP_06154201.1| pilus-assembly protein [Neisseria gonorrhoeae SK-93-1035] gi|291042974|ref|ZP_06568712.1| pilus assembly protein pilG [Neisseria gonorrhoeae DGI2] gi|293398318|ref|ZP_06642509.1| type IV pilus assembly protein PilC [Neisseria gonorrhoeae F62] gi|639480|gb|AAC43469.1| PilG [Neisseria gonorrhoeae] gi|59718889|gb|AAW90294.1| pilus assembly protein [Neisseria gonorrhoeae FA 1090] gi|193934841|gb|ACF30665.1| PilG [Neisseria gonorrhoeae NCCP11945] gi|226513583|gb|EEH62928.1| pilus-assembly protein [Neisseria gonorrhoeae 1291] gi|268548958|gb|EEZ44376.1| pilus assembly protein pilG [Neisseria gonorrhoeae 35/02] gi|268551392|gb|EEZ46411.1| pilus assembly protein pilG [Neisseria gonorrhoeae FA19] gi|268583986|gb|EEZ48662.1| type IV pilus assembly protein [Neisseria gonorrhoeae MS11] gi|268586321|gb|EEZ50997.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID18] gi|268588586|gb|EEZ53262.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID1] gi|268623193|gb|EEZ55593.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID332] gi|268625359|gb|EEZ57759.1| type IV pilus assembly protein [Neisseria gonorrhoeae SK-92-679] gi|268627623|gb|EEZ60023.1| pilus-assembly protein [Neisseria gonorrhoeae SK-93-1035] gi|291013113|gb|EFE05082.1| pilus assembly protein pilG [Neisseria gonorrhoeae DGI2] gi|291611242|gb|EFF40326.1| type IV pilus assembly protein PilC [Neisseria gonorrhoeae F62] gi|317165047|gb|ADV08588.1| PilG [Neisseria gonorrhoeae TCDC-NG08107] Length = 410 Score = 78.6 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 54/183 (29%), Gaps = 6/183 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60 + + +D + ++AGLP+ A ++ + + + Sbjct: 58 RVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRGQVE 117 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SLS + S + F + + GG L L L+ + ++ KV+ Sbjct: 118 QGSSLSRAFSNHPK-----YFDRFYCNLVAAGETGGVLESLLDKLAIYKEKTQAIRKKVK 172 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + L F + V + + + + + M Sbjct: 173 TALTYPVSVIAVAIGLVFVMMIFVLPAFKEVYANMGAELPPLTQTVMDMSDFFVSYGWMV 232 Query: 181 LMI 183 L+ Sbjct: 233 LIA 235 >gi|239814537|ref|YP_002943447.1| type II secretion system protein [Variovorax paradoxus S110] gi|239801114|gb|ACS18181.1| type II secretion system protein [Variovorax paradoxus S110] Length = 301 Score = 78.6 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 73/148 (49%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 ++ +IK R + ++FP+A D+++ V AGL + A+ + + S+ + E Sbjct: 135 LRMMIKSRQREIFENFPDAADLMLVCVEAGLGLDAALVKVTEEIRVKSEALAQELHWTNL 194 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+ + ++E+ F+T+++ + G ++ E+L S LR ++ ++A Sbjct: 195 EMRAGSTREKSLRNLALRTGVEEIGTFATMLTQADRFGTSIGESLRVFSEDLRHKRQVRA 254 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + A + K ++ + C+S ++ Sbjct: 255 EELAAKVPTKMLLPLVVCIFPCISAVIL 282 >gi|94497258|ref|ZP_01303830.1| type II secretion system protein [Sphingomonas sp. SKA58] gi|94423363|gb|EAT08392.1| type II secretion system protein [Sphingomonas sp. SKA58] Length = 329 Score = 78.6 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 60/148 (40%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + + ++KR+A P+ALD++V AGL V A A + + + + EF Sbjct: 171 IDNKVQKRSAAIRKGLPDALDLLVICAEAGLTVDAAFARVARELGKAYPELGDEFHLTAI 230 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + L V T + + G L+ AL LS R + M+A Sbjct: 231 ELSFLTERRMAFENLASRVKLDAVKGVVTTMIQTEKYGTPLASALRVLSAEFRHERMMRA 290 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A + A + +I + + ++ Sbjct: 291 EEKAARLPAIMTVPLILFILPTLFVVIL 318 >gi|302521640|ref|ZP_07273982.1| integral membrane protein [Streptomyces sp. SPB78] gi|318057612|ref|ZP_07976335.1| hypothetical protein SSA3_06724 [Streptomyces sp. SA3_actG] gi|318080452|ref|ZP_07987784.1| hypothetical protein SSA3_28136 [Streptomyces sp. SA3_actF] gi|302430535|gb|EFL02351.1| integral membrane protein [Streptomyces sp. SPB78] Length = 300 Score = 78.6 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 61/144 (42%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +++R P+ LD++ V AGL A+ + + P E R + Sbjct: 139 IWQAVRERRDVIDRTLPDFLDVLAVVVSAGLGFRQALERVAEKYEGPWADELRITLRQMD 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+S ++ + R ++V+ F + + +LG ++E L ++ +R +A+ + Sbjct: 199 MGVSRRQAFDELRRRNNSEQVAQFVSALQQGEELGSPIAETLIQIANDMRRTDAQQARRR 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144 A KA+ + + L+ Sbjct: 259 AAKTIPKATMVTLVFMLPATMILI 282 >gi|220933966|ref|YP_002512865.1| type IV pilin biogenesis protein PilC [Thioalkalivibrio sp. HL-EbGR7] gi|219995276|gb|ACL71878.1| type IV pilin biogenesis protein PilC [Thioalkalivibrio sp. HL-EbGR7] Length = 403 Score = 78.6 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 18/171 (10%), Positives = 45/171 (26%), Gaps = 4/171 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 + D L + + AG+P+ A ++ +P E +++ G + Sbjct: 58 KKKIVPKDIAVFLRQMATMMEAGVPLVQAFDIVGRGHENPSMQELILAMKSDVEGGT--- 114 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + + + G L L ++ +++KAK++ Sbjct: 115 -TFSAALGKHPKYFDDLVVNLVNAGEQAGALETLLDKIATYKEKTESLKAKIKKALFYPT 173 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 A + + + V D + + Sbjct: 174 AVLVVAFIVTAILLIFVVPQFQDLFQGFGADLPVFTQFVIGISEFFQSYWW 224 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 18/142 (12%), Positives = 43/142 (30%), Gaps = 11/142 (7%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLS 66 R A + AG+P+ +A+ + G + + + E R+ + G L Sbjct: 266 RKASIAR----FARTLSTMFAAGVPLVEAMESVAGATGNALYREATLRIRDETAAGTQLQ 321 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + + G L + L ++ + + + ME Sbjct: 322 AAMRNTAL------FPNMVVQMVAIGEESGALDDMLDKVADFYEEEVDNMVDSLSSLMEP 375 Query: 127 KASAWIIGSLPFCVSTLVYFTS 148 A++ + V + Sbjct: 376 MIMAFLGVVVGGLVIAMYLPIF 397 >gi|163757632|ref|ZP_02164721.1| putative component of pilus protein [Hoeflea phototrophica DFL-43] gi|162285134|gb|EDQ35416.1| putative component of pilus protein [Hoeflea phototrophica DFL-43] Length = 331 Score = 78.6 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 65/158 (41%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + KKR +P+ALD+++ V +G+ + A+ + + S + EF Sbjct: 173 ISNQSKKRQQSIKMAWPDALDLLLICVESGVSIEAAMKRVAEEIAIQSTALAEEFLLTTA 232 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + L+ V + + + G +++AL L++ RD + +A Sbjct: 233 ELSYLQDRRVAFENLGNRTGLEAVKSVTQALIQSERYGTPIAQALRVLAQESRDARMTEA 292 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A ++ K + +I + ++ P + V+ Sbjct: 293 EKKAAALPPKLTVPMILFFLPVLIGVI--LGPAAIQVM 328 >gi|255066086|ref|ZP_05317941.1| 3-isopropylmalate dehydrogenase [Neisseria sicca ATCC 29256] gi|255049631|gb|EET45095.1| 3-isopropylmalate dehydrogenase [Neisseria sicca ATCC 29256] Length = 413 Score = 78.6 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 68/187 (36%), Gaps = 8/187 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60 K K+ +D + ++AGLP+ A ++ S+ + +V Sbjct: 61 KVKATKKRRITQEDITVFTRQLATMMKAGLPLMQAFEIVARGHSNPSMTEMLMQVRADVE 120 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +L +S ++ + F + + GG L L L+ + +K KV+ Sbjct: 121 QGSALGKSFAKYPK-----YFDRFYCNLIAAGEAGGVLESLLDKLAVYKEKTQAIKKKVK 175 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH--MLLGVAAAFMLIGIMV 178 + + +L F + V + + G +++ ++ F+ G ++ Sbjct: 176 TALTYPISIVVVAIALIFVMMRWVLPEFGKVYAGMGAELPGLTKIVMDISKIFVEYGWLM 235 Query: 179 MRLMINF 185 + ++I Sbjct: 236 IVIVIAI 242 >gi|77462448|ref|YP_351952.1| putative Flp pilus assembly protein TadC [Rhodobacter sphaeroides 2.4.1] gi|77386866|gb|ABA78051.1| Putative Flp pilus assembly protein TadC [Rhodobacter sphaeroides 2.4.1] Length = 326 Score = 78.6 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 75/161 (46%), Gaps = 4/161 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +K ++R + + FP+ALD+++ V AG + ++ + +S + EF V Sbjct: 165 IKRRAQERYDQIVSGFPDALDMMLVCVEAGQSLDQSILRVARESAAGYPALAEEFEIVAH 224 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + M + + +VS F T + + G +++EAL S +RD++ M+A Sbjct: 225 EVKAGKERVAVLKDMSERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRA 284 Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + +A ++ K + ++ ++P + L+ + G L Sbjct: 285 EEKANTLPTKLTLGTMLLTVPPLMLILIGPSVYGIATQLGG 325 >gi|304315118|ref|YP_003850265.1| hypothetical protein MTBMA_c13650 [Methanothermobacter marburgensis str. Marburg] gi|302588577|gb|ADL58952.1| putative membrane protein [Methanothermobacter marburgensis str. Marburg] Length = 313 Score = 78.6 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 71/176 (40%), Gaps = 4/176 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++++R P+ L I +RAG+ + A+ + Q P+ E +R + +G Sbjct: 91 MMERRVDAIEQSTPDFLRQIASLLRAGVGLESALEDVSKQGEGPLYDELKRAVIEIKIGR 150 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++I M + Q + +I + GG+LS+ + ++ LR +K + +A Sbjct: 151 TFDDAILSMSERLKSQNLDRTFRMILEGRRAGGSLSDVIETVAEDLRAVLALKRERKANV 210 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 M + + + + + G+M + + AA G +++ Sbjct: 211 MMSVMFLIVAAIIAAPFALGMIMVYSGFMESVGKPNP----ILGAAKIAAAGYIII 262 >gi|302381751|ref|YP_003817574.1| type II secretion system F domain protein [Brevundimonas subvibrioides ATCC 15264] gi|302192379|gb|ADK99950.1| Type II secretion system F domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 333 Score = 78.6 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 62/148 (41%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +K+ I KR + FP+ALD+++ V AG+ + A+ + + +S + E + Sbjct: 160 LKNRIAKRQLSIMQAFPDALDLLLICVEAGMSIEAAIVKVSQEIGTTSVELAEELALLSA 219 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + V ST + Q G L AL +++ RD + A Sbjct: 220 ELSYLPERRMAYEGLAKRTNHPGVRSVSTAMIQAEQYGTPLGSALRTMAKENRDLRLSAA 279 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ A+ + +I + ++ Sbjct: 280 EKKAAALPAQLTVPMIIFFLPVLFVVIL 307 >gi|222056454|ref|YP_002538816.1| type II secretion system protein [Geobacter sp. FRC-32] gi|221565743|gb|ACM21715.1| type II secretion system protein [Geobacter sp. FRC-32] Length = 405 Score = 78.6 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 22/171 (12%), Positives = 49/171 (28%), Gaps = 5/171 (2%) Query: 10 AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 K D + +GLP+ + ++ GQ + E ++ S Sbjct: 60 KKIETKDLVVFTRQFATMIDSGLPLVQCLEILSGQQENKSFKEILIKVKESVESGS---- 115 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + + GG L L L+ + +K +V+ + Sbjct: 116 TFADALSKHPKAFDQLYVNLVAAGEAGGILDTILNRLAAYIEKAMKLKKQVKGAMVYPIT 175 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 I + + V T + G + +A + L +++ Sbjct: 176 IMSIAVIVVGVILVFVIPTFAKMFADFGGELPGPTKVVIALSSFLKKYIIV 226 Score = 38.2 bits (87), Expect = 0.56, Method: Composition-based stats. Identities = 12/130 (9%), Positives = 35/130 (26%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+P+ D + ++ + V E Q + + + Sbjct: 273 FTRTLGTMISSGVPIMDGLEIVAKTA-GNVVVEKAIYDVRQAISEGKTMAEPLAA----C 327 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G + L ++ D + ME ++ ++ Sbjct: 328 GVFPPMVVQMISVGEATGAMDAMLNKIADFYDDEVDDAVGALTSMMEPMLMVFLGTTVGG 387 Query: 139 CVSTLVYFTS 148 V + Sbjct: 388 LVVAMYLPIF 397 >gi|311743553|ref|ZP_07717359.1| type II secretion system protein F protein [Aeromicrobium marinum DSM 15272] gi|311312683|gb|EFQ82594.1| type II secretion system protein F protein [Aeromicrobium marinum DSM 15272] Length = 298 Score = 78.6 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 61/146 (41%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R A + P+ALD IV S+ +GL A+ E R ++ Sbjct: 140 LSSRARERQAAMELELPDALDKIVISLESGLGFESALMNAAETGKGDFADELVRTLQDIQ 199 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ + +V +++ F + + G ++S + N S +R ++ ++A+ + Sbjct: 200 VGMPRRAAYEALVNRTESEDIRRFVRSLIQAEETGVSVSTVVRNQSADMRMKRKLRAEGK 259 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146 A + K +I L + +V Sbjct: 260 AQQVSVKLLFPLIFCLFPVLFVIVLA 285 >gi|167566943|ref|ZP_02359859.1| type II secretion system protein [Burkholderia oklahomensis EO147] gi|167574012|ref|ZP_02366886.1| type II secretion system protein [Burkholderia oklahomensis C6786] Length = 318 Score = 78.6 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 67/165 (40%), Gaps = 4/165 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + I R ++DFP+ALD++ + AGL + + + + S V E ++ Sbjct: 153 LSRRIASRQRVIVEDFPDALDLLTVCIEAGLGLDAGLMKVADELRLRSPVVADELGLMLL 212 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S ++ + +++ FS ++ + G ++ +L LS LR ++ M+A Sbjct: 213 EMRSGFSKETALRNLALRTGAEDIDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 272 Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + +A + I P ++ L+ L+ G Sbjct: 273 EERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRTLLPTMAG 317 >gi|84516638|ref|ZP_01003997.1| type II/IV secretion system protein, TadC subfamily [Loktanella vestfoldensis SKA53] gi|84509674|gb|EAQ06132.1| type II/IV secretion system protein, TadC subfamily [Loktanella vestfoldensis SKA53] Length = 316 Score = 78.6 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 67/148 (45%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + ++ R ++ FP++LD+++ V AG + ++ + + + EF V + Sbjct: 157 VTRRVEVRKEAIINAFPDSLDLMLVCVEAGQSLDQSILRVSNELRTGFPELAEEFEIVSQ 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + + M + ++S F TV+ +Q G ++S+AL + +RD++ M+A Sbjct: 217 EAKAGKDKTTVLKDMAERCGVPDISSFVTVMVQSAQFGTSISDALRVYASEMRDKRVMRA 276 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + A + K + + + ++ Sbjct: 277 EEAANKLPTKMTLATMMLTVPPLMAILI 304 >gi|221195456|ref|ZP_03568511.1| bacterial type II secretion system protein F domain protein [Atopobium rimae ATCC 49626] gi|221184643|gb|EEE17035.1| bacterial type II secretion system protein F domain protein [Atopobium rimae ATCC 49626] Length = 311 Score = 78.6 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 25/179 (13%), Positives = 66/179 (36%), Gaps = 1/179 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +K + P + ++ +G +S A+ + S V F R G+ + Sbjct: 131 RKLKLEVSHSMPGIYRTLSVALGSGQTLSQAIEYVGNHSHGAVAQYFIRASLKLRCGMPV 190 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + + + + S +T + + + G L + ++ + + + + + Sbjct: 191 ESVVEELACDLSVPGSSLLATALVISHRTGSPLRNLFLRTATLVERQSEFERLLSVKTAQ 250 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + SA I+ LP + ++ SP + L G + +A ++++R ++ Sbjct: 251 VRLSARIVCLLPLLLIGVLSLISPDFQKGLTTT-TGIICTLLALGMDAGALVIIRKLMK 308 >gi|302669441|ref|YP_003829401.1| Flp pilus assembly protein TadB [Butyrivibrio proteoclasticus B316] gi|302393914|gb|ADL32819.1| Flp pilus assembly protein TadB [Butyrivibrio proteoclasticus B316] Length = 254 Score = 78.6 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 80/192 (41%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRV 55 K+ K+ F +A+ ++ S++AG + +A + R+ Sbjct: 63 KNQKNKKCRLIGIQFKDAIFSVLTSLKAGFSIENAFMEARRDMDLLYGKNSDISFYLSRI 122 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + + L + I M + ++ F+ V SV + GGN++E + ++ + + Sbjct: 123 SKGLRNNVPLEKLIFGMGKETTNTDIQDFALVFSVAKRNGGNMTEIIDRTISVISGKLEV 182 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + +++ L + A I+ +PF + + TSPG+ + L ++ G L+ V I Sbjct: 183 EKEIEVLISAKRLEARIMNMVPFFIIFYISITSPGFFDALYHNVLGICLMAVCMVIYCIS 242 Query: 176 IMVMRLMINFDV 187 + ++N + Sbjct: 243 YYLSEKIVNISI 254 >gi|302553855|ref|ZP_07306197.1| integral membrane protein [Streptomyces viridochromogenes DSM 40736] gi|302471473|gb|EFL34566.1| integral membrane protein [Streptomyces viridochromogenes DSM 40736] Length = 295 Score = 78.6 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 62/162 (38%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I+ R P+ LD++ V AGL A+ + + P E R + Sbjct: 134 IWSAIRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVASRYEGPWADELRITLRQMD 193 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+S ++ + + R ++V+ F T + +LG + + L +L++ +R A+ + Sbjct: 194 LGMSRRQAFAELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRK 253 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162 A KA+ I + L+ G Sbjct: 254 AARAVPKATMMITTFMVPATMLLLGAGLILGSGTDFGSVTGK 295 >gi|86355869|ref|YP_467761.1| pilus assembly protein [Rhizobium etli CFN 42] gi|86279971|gb|ABC89034.1| probable pilus assembly protein [Rhizobium etli CFN 42] Length = 328 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 62/148 (41%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + + KR +P+ALD+++ V +G+ + A+ + + S P+ E Sbjct: 170 ISNRMSKRQHSIKRAWPDALDLMLICVESGVSMEAAMRRVSEELGEQSPPLAEEMVLTTA 229 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + L+ V + + + G +++AL L++ RD + +A Sbjct: 230 ELSFLPDRRVALDNLAARTQLELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEA 289 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 290 EKKAAALPPKLTVPMILFFLPVLIAVIL 317 >gi|319951073|ref|ZP_08024926.1| Type II secretion system F domain protein [Dietzia cinnamea P4] gi|319435233|gb|EFV90500.1| Type II secretion system F domain protein [Dietzia cinnamea P4] Length = 300 Score = 78.2 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 62/156 (39%), Gaps = 1/156 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ ++R + + + LD + +V AGL A+A + P+ E R ++ Sbjct: 144 LQSRGQERNDEIALELADTLDQMTIAVEAGLGFDAAMARAGRNGTGPLAQELIRTLQEIQ 203 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G + ++ + ++ F I G ++++ L + +R ++ +A+ + Sbjct: 204 VGQLRRTAYEQLALRTDVPDLRRFIRAIIQADAYGISVADVLRTQASEMRLKRRQRAEEK 263 Query: 121 ALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A + K ++ LP L+ T M Sbjct: 264 AQQVPVKVIFPLLVCILPVLFIVLLGPTVINMMEAF 299 >gi|311743761|ref|ZP_07717567.1| type II secretion system protein [Aeromicrobium marinum DSM 15272] gi|311312891|gb|EFQ82802.1| type II secretion system protein [Aeromicrobium marinum DSM 15272] Length = 285 Score = 78.2 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 67/171 (39%), Gaps = 3/171 (1%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +P+A+D + +VRAG+ + +AV + + + +R++F E++ + Sbjct: 109 WPDAVDNLASAVRAGMSLPEAVMQVGERGPEVLRADFVAFGRDYRATGRFEEALDLLKIR 168 Query: 76 MPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + GG+L L LS LRD + ++++ A + Sbjct: 169 LADPVGDRVVESLRLARDVGGGDLGRMLRALSAYLRDDLRTRGELESRQSWTVNGARLAV 228 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + P+ V + P + P G ++L V AA L M + Sbjct: 229 AAPWLVLASMSL-QPDVIAR-FGSPTGTLILVVGAATCLGAYRAMTWIGRL 277 >gi|332560332|ref|ZP_08414654.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N] gi|332278044|gb|EGJ23359.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N] Length = 326 Score = 78.2 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 75/161 (46%), Gaps = 4/161 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +K ++R + + FP+ALD+++ V AG + ++ + +S + EF V Sbjct: 165 IKRRAQERYDQIVSGFPDALDMMLVCVEAGQSLDQSILRVARESAAGYPALAEEFEMVAH 224 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + M + + +VS F T + + G +++EAL S +RD++ M+A Sbjct: 225 EVKAGKERVAVLKDMSERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRA 284 Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + +A ++ K + ++ ++P + L+ + G L Sbjct: 285 EEKANTLPTKLTLGTMLLTVPPLMLILIGPSVYGIATQLGG 325 >gi|114568975|ref|YP_755655.1| type II secretion system protein [Maricaulis maris MCS10] gi|114339437|gb|ABI64717.1| type II secretion system protein [Maricaulis maris MCS10] Length = 331 Score = 78.2 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 58/157 (36%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + +L KR + FP+ LD+++ V +G+ + A + + + E Sbjct: 174 LSNLAAKRQQSIMGAFPDGLDLLLICVESGMSIEAAFHKVSSEVGSQSIELAEELSLTTA 233 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + V T + + G L +AL +++ RD + A Sbjct: 234 ELSYLQDRRVAYENLAKRTNHPGVKAVCTSLIQAERYGTPLGQALRVMAKENRDMRLAAA 293 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + +A S+ AK + +I + ++ P + Sbjct: 294 EKKAASLPAKLTVPMIIFFLPVLFVVI--LGPAIIRF 328 >gi|126461326|ref|YP_001042440.1| type II secretion system protein [Rhodobacter sphaeroides ATCC 17029] gi|221638311|ref|YP_002524573.1| Type II secretion system protein [Rhodobacter sphaeroides KD131] gi|126102990|gb|ABN75668.1| type II secretion system protein [Rhodobacter sphaeroides ATCC 17029] gi|221159092|gb|ACM00072.1| Type II secretion system protein [Rhodobacter sphaeroides KD131] Length = 326 Score = 78.2 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 75/161 (46%), Gaps = 4/161 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +K ++R + + FP+ALD+++ V AG + ++ + +S + EF V Sbjct: 165 IKRRAQERYDQIVSGFPDALDMMLVCVEAGQSLDQSILRVARESAAGYPALAEEFEMVAH 224 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + M + + +VS F T + + G +++EAL S +RD++ M+A Sbjct: 225 EVKAGKERVAVLKDMSERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRA 284 Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + +A ++ K + ++ ++P + L+ + G L Sbjct: 285 EEKANTLPTKLTLGTMLLTVPPLMLILIGPSVYGIATQLGG 325 >gi|297157606|gb|ADI07318.1| integral membrane protein [Streptomyces bingchenggensis BCW-1] Length = 297 Score = 78.2 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 58/143 (40%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +++R P+ LD++ V AGL A+ + + P E R + +G+ Sbjct: 139 AVRERRHAIERTLPDFLDVLAVVVSAGLSFRQALDRVAEKYEGPWADELRITLRQMDMGV 198 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S ++ + + ++V+ F T + +LG + E L ++ +R A+ +A Sbjct: 199 SRRQAFEELRKRNDSEQVAQFVTTLQQGEELGAPIVETLIAIANDMRRTDAQNARRRAAR 258 Query: 124 MEAKASAWIIGSLPFCVSTLVYF 146 KA+ + + L+ Sbjct: 259 AVPKATMVVTTFMVPGTMILLIA 281 >gi|292493808|ref|YP_003529247.1| type II secretion system protein [Nitrosococcus halophilus Nc4] gi|291582403|gb|ADE16860.1| type II secretion system protein [Nitrosococcus halophilus Nc4] Length = 406 Score = 78.2 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 49/174 (28%), Gaps = 7/174 (4%) Query: 7 KRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLS 64 +R K + + + AG+P+ A +I + + G + Sbjct: 59 RRKKKITPKEIAIFSRQLATMMSAGVPLVQAFEIIGRGHENASMQALVLNIKGEVEGGGT 118 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L+E++ + R + + G L L ++ + +K K++ Sbjct: 119 LAEALKKHPRQ-----FDDLFCNLVNAGEQSGTLETLLDKIATYKEKTEAIKGKIKKALF 173 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 A + + + V D LL + + + Sbjct: 174 YPTAVVVVAFIITAILLIFVIPQFQTLFQNFGADLPALTLLVLQLSALFQEWWW 227 Score = 40.1 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 16/128 (12%), Positives = 45/128 (35%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + AG+P+ +A+A + G + + V ++ I + + ++ R + P Sbjct: 278 RTLSTMFAAGVPLVEAMASVAGAAGNSVYAQGILRIRDEVSTGTQLQAAMRNSQLFPN-- 335 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + G++ + LA ++ + + + +E A + + V Sbjct: 336 ---MVVQMVAIGEEAGSIDQMLAKVADFYEEEVDNAVDALSSLLEPLIMAILGVLVGGLV 392 Query: 141 STLVYFTS 148 + Sbjct: 393 IAMYLPIF 400 >gi|320095975|ref|ZP_08027590.1| type II secretion system protein [Actinomyces sp. oral taxon 178 str. F0338] gi|319977093|gb|EFW08821.1| type II secretion system protein [Actinomyces sp. oral taxon 178 str. F0338] Length = 286 Score = 78.2 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 73/186 (39%), Gaps = 3/186 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R + + +P +D +V VRAG + +A + +R F + Sbjct: 95 VSSRSHRRAREAREAWPEVVDSLVSGVRAGAALPTLLADLGSGGPPALRGAFEAFGQDYR 154 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKV 119 ++ R+ + + + G +L+ L +L+ +LR+ ++ ++ Sbjct: 155 AHGRFDVALDRLKDRLADPVADRIVEALRLARSVGGADLARLLTDLAVLLREDARVRGEL 214 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +A +A + + P+ V L+ + + N P+G +L + A + +M Sbjct: 215 EARQSWTVGAARLGVAAPWAVLLLISQGARS--ARVWNTPQGMAVLALGGACCVAAYALM 272 Query: 180 RLMINF 185 R++ Sbjct: 273 RVLSRL 278 >gi|302558695|ref|ZP_07311037.1| integral membrane protein [Streptomyces griseoflavus Tu4000] gi|302476313|gb|EFL39406.1| integral membrane protein [Streptomyces griseoflavus Tu4000] Length = 295 Score = 78.2 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 61/144 (42%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I+ R P+ LD++ V AGL A+ + + P E R + Sbjct: 134 IWSAIRVRRDVIERTLPDFLDVLAVVVSAGLGFRQALDRVSSKYEGPWADELRITLRQMD 193 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+S ++ + + R ++V+ F T + +LG + + L +L++ +R A+ + Sbjct: 194 LGMSRRQAFAELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRK 253 Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144 A KA+ I + L+ Sbjct: 254 AARAVPKATMMITTFMVPATMILL 277 >gi|90416350|ref|ZP_01224282.1| pilin secretion/fimbrial assembly system protein, PilC [marine gamma proteobacterium HTCC2207] gi|90332075|gb|EAS47289.1| pilin secretion/fimbrial assembly system protein, PilC [marine gamma proteobacterium HTCC2207] Length = 404 Score = 78.2 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 20/166 (12%), Positives = 51/166 (30%), Gaps = 6/166 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73 D + ++AG+P+ + ++ +P ++ + G S ++ R Sbjct: 66 DIALFTRQLATMMKAGVPLVQSFDIVADGFDNPTMQALIHQIRDDVAAGGSFPNALRRSP 125 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G L L ++ + +KAK++ A + Sbjct: 126 R-----YFDDLFCSLVDSGETAGALETMLDRVATYKEKTEQLKAKIKKALTYPIAVLVVA 180 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + V + D L + + M+ ++ Sbjct: 181 MVVTAILLIKVVPVFAETFSSFGADLPAFTLFVLGLSEMMQEYWLI 226 Score = 36.3 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 16/131 (12%), Positives = 41/131 (31%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P+ DA+ + G + + + +V + G+ L +I Sbjct: 274 FARTLATTFAAGVPIVDALESVAGAAGNALYHDAILKVRDDVTTGVQLQMAIKT------ 327 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 Q ++ + G L E L + + + +E + + + Sbjct: 328 TQMFPILLQQMTAIGEESGALDEMLEKAALHYEELVDNSVDNLTSLLEPLIMSVLGVLVG 387 Query: 138 FCVSTLVYFTS 148 + + Sbjct: 388 GLMIAMYLPIF 398 >gi|75674494|ref|YP_316915.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255] gi|74419364|gb|ABA03563.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255] Length = 325 Score = 78.2 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 59/148 (39%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + + I KR FP+ALD+++ + +G+ + A + ++ + + E Sbjct: 166 LHNAITKRQLSIKRAFPDALDLLLICLESGMSIEVAFRKVSTETGNQSVALAEELTLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + ++ V + + G L+++L +++ RD + +A Sbjct: 226 ELSYLQDRKVAYENLANRTGVEGVKSVCLALQQSERYGTPLAQSLRVMAQENRDMRMTEA 285 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 286 EKKAAALPPKLTVPMIVFFLPVLFVVIL 313 >gi|225848333|ref|YP_002728496.1| pilin biogenesis protein [Sulfurihydrogenibium azorense Az-Fu1] gi|225644500|gb|ACN99550.1| pilin biogenesis protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 408 Score = 78.2 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 68/180 (37%), Gaps = 13/180 (7%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 D + + AG+ ++ A+ ++ Q +P ++ +V + G+SLS+++++ Sbjct: 69 ELDLAIFTRQLGAMINAGIGITQALEILAQQMPNPTLQEAINKVRDDVVTGMSLSKTMAK 128 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P F + ++ G L E L + +K K+++ S A Sbjct: 129 HPNVFPP-----FLVNLVDAAEESGKLDETLKRATVYYEKLAAIKGKIKSASWYPTAVLV 183 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-------AFMLIGIMVMRLMIN 184 I + + T V T + + + + + +IG ++ ++IN Sbjct: 184 IATLIVLGLLTFVVPTFAEIYSSMGGELPFLTQILINISNNLKSNILFIIGFIIAVVVIN 243 Score = 45.9 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 15/134 (11%), Positives = 37/134 (27%), Gaps = 6/134 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + G+ + A+ + + + E + +T + Sbjct: 274 ALAKFARTFATLINGGVSIIRAIEIASSTVGNVLIEESLQKTKTDVEKGKP------FSQ 327 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + T ++ + G L E L ++ D + + ++E I G Sbjct: 328 SLDKNYFPLMFTAMAAVGENTGRLDEMLDTIASFYEDEVDREVDALISTLEPLMMVVIGG 387 Query: 135 SLPFCVSTLVYFTS 148 + F + L Sbjct: 388 IVGFILIALYLPIF 401 >gi|103488240|ref|YP_617801.1| type II secretion system protein [Sphingopyxis alaskensis RB2256] gi|98978317|gb|ABF54468.1| type II secretion system protein [Sphingopyxis alaskensis RB2256] Length = 326 Score = 78.2 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 67/149 (44%), Gaps = 3/149 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + +R + L+ FP+ LD+++ V AG+ + A+ + + V + + Sbjct: 160 LTAKADRRRQEILNGFPDCLDLMLVCVEAGMGLEAALDRVGREMTLSHPLVAEQISQTTL 219 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S E++ + + E+ F+T++ +LG +++ L + +R+++ M+A Sbjct: 220 ELRAGASREEALRALADRSGVDEIRAFATLLIQSDKLGSSIATTLRIYAAEMREKRRMRA 279 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF 146 + +A + S ++ + + ++ Sbjct: 280 EEKAHRLPVLLSIPLVACMLPVMIGVLML 308 >gi|46580529|ref|YP_011337.1| hypothetical protein DVU2124 [Desulfovibrio vulgaris str. Hildenborough] gi|46449948|gb|AAS96597.1| conserved hypothetical protein [Desulfovibrio vulgaris str. Hildenborough] Length = 284 Score = 78.2 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 73/158 (46%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + IK+R + ++ P+ALD++V V AG+ + A+A + + +S + E + I Sbjct: 121 LSSRIKERRQEIINALPDALDLLVVCVEAGMGLDQALARVAKELQSTSPVLAEELQLSIL 180 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S ++++ + + +++V+ T+I G +++ L S +R + +A Sbjct: 181 ELRAGKSRADTLKNLAARVAIEDVNSLVTLIIQADAFGTSIASTLRVYSDTMRTTRFQRA 240 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + A M K ++ + + V P ++ ++ Sbjct: 241 EEIAAKMPVKLLFPLVFCILPALF--VTIMGPAFIKLM 276 >gi|148976656|ref|ZP_01813343.1| putative tight adherence TadC-related transmembrane protein [Vibrionales bacterium SWAT-3] gi|145964007|gb|EDK29265.1| putative tight adherence TadC-related transmembrane protein [Vibrionales bacterium SWAT-3] Length = 323 Score = 78.2 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 75/158 (47%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + + K+R K + P+ALD++V +GL + A+ + + + E V Sbjct: 158 LNKMQKERQRKIRNGVPDALDLLVVCTESGLGFNAALGRVANELYISQPELADELDTVCA 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+++ ++++++V L E+ +++S S++GG+L++ L + + RD++ A Sbjct: 218 KIQAGVTMPDALTQLVERTGLHELEGLVSLLSHASRMGGSLAQTLRDYTDDFRDKRQQAA 277 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + A + K ++ + C + PG M V+ Sbjct: 278 EEIAAKIPTKMLFPMLLFIWPC--FFIVALGPGMMIVM 313 >gi|189424714|ref|YP_001951891.1| type II secretion system protein [Geobacter lovleyi SZ] gi|189420973|gb|ACD95371.1| type II secretion system protein [Geobacter lovleyi SZ] Length = 404 Score = 78.2 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 22/171 (12%), Positives = 58/171 (33%), Gaps = 6/171 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71 D + +GLP+ + ++ Q P E RV E+ G + ++++++ Sbjct: 63 TKDLVIFTRQFATMIDSGLPLVQCLDILSSQQEKPAFKEILLRVKESVESGSTFADALAK 122 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + ++GG L L L+ + +K +++ + Sbjct: 123 HPKA-----FDQLFVNLVAAGEIGGILDTILNRLAAYIEKAMKLKKQIKGAMVYPTTIMS 177 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 I + + V T + G + + L+ +++ ++ Sbjct: 178 IAVIVVGVILVFVIPTFAKMFADFGGELPGPTKFVIGLSNFLLKYIIVIII 228 Score = 40.5 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 13/130 (10%), Positives = 37/130 (28%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + V +G+P+ D + ++ + + + E + +SE + Sbjct: 272 FTRTLGTMVSSGVPIMDGLEIVAKTAGNKIVEEAIYGVRQA-----ISEGKTMAEPLQSC 326 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G + L ++ D + ME ++ ++ Sbjct: 327 GIFPPMVVQMIAVGEATGAMDAMLTKIADFYDDEVDDAVSAMTAMMEPLLMVFLGTTVGG 386 Query: 139 CVSTLVYFTS 148 V + Sbjct: 387 LVVAMYLPIF 396 >gi|269795082|ref|YP_003314537.1| type II secretory pathway, component PulF [Sanguibacter keddieii DSM 10542] gi|269097267|gb|ACZ21703.1| type II secretory pathway, component PulF [Sanguibacter keddieii DSM 10542] Length = 416 Score = 77.9 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 59/180 (32%), Gaps = 19/180 (10%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V AGL + + ++ Q+ + P+ V GLSLS ++ + Sbjct: 78 DLAIMARQMATMVSAGLSLIRTLGILADQTENKPLAKVLGIVRSDVETGLSLSNALVKHP 137 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 P I + GG L ++L + + ++AKV++ +I Sbjct: 138 EAFPP-----IMVNIVRAGETGGFLEKSLLSAADNFEAEVKLRAKVKSAMTYPVVVLFIA 192 Query: 134 GSLPFCVSTLVYFTSPGYMN-------------VLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + + VL++ +L V ++GI R Sbjct: 193 IAAVIGMLLFIVPIFKDMFEGLGGELPAPTQFLVLLSSWMKWLLPLVLVVSAVVGIWWQR 252 Score = 43.2 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 15/137 (10%), Positives = 36/137 (26%), Gaps = 5/137 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + AG+P+ A+ ++ S + R + S+ S Sbjct: 281 AIARFTRNFSTMLGAGVPILQALDIVGSTSGNWAIENALR-----DVEKSVRTGESLSGP 335 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 T + + G++ LA +S + +E ++ Sbjct: 336 LAHHDVFPPMVTQMIAVGEDAGSMELMLAKISEFYDQEVESTTEQLTSLLEPLMIVFLGA 395 Query: 135 SLPFCVSTLVYFTSPGY 151 + + L + Sbjct: 396 IIGGMIIALYMPIFKIF 412 >gi|167957546|ref|ZP_02544620.1| pilin biogenesis protein [candidate division TM7 single-cell isolate TM7c] Length = 404 Score = 77.9 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 59/168 (35%), Gaps = 6/168 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + + AGLP+S ++ + Q+++ E + +I G SLS+S ++ Sbjct: 68 FTRQLATLIGAGLPLSQSLRTVQEQTTNKRMQEIVQEIISDVEGGKSLSDSFAKHPEA-- 125 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G + E+L L+ M +K++ M +I + Sbjct: 126 ---FNKVYVALVAAGETSGTMDESLKRLAAQQEKDAAMMSKIRGAMMYPSIVLAVIILVV 182 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + V G L L+ + A I + L+I Sbjct: 183 GFMLFTVVPQVEGLYRDLNKGLPFITLIMINVANFFIHFWWLALLIMI 230 >gi|149175288|ref|ZP_01853910.1| probable secretion system protein TadC [Planctomyces maris DSM 8797] gi|148845897|gb|EDL60238.1| probable secretion system protein TadC [Planctomyces maris DSM 8797] Length = 308 Score = 77.9 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 64/148 (43%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 ++ LIK R + P+ALD++V V AGL + A+ + + V SEF Sbjct: 147 LRLLIKGRVERIFLSLPDALDLLVVCVEAGLGLDAAMRRVSEELEETAPDVCSEFALCNL 206 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G E + + + ++ + ++ + G ++++AL S +R +++ A Sbjct: 207 QLQMGRPRREVLHDLGIRSGVDDMRALAAILIQADKFGSSIAQALRVQSDSMRVKRSQLA 266 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + QA K ++ + + ++ Sbjct: 267 EEQAAMTAVKMIFPLVLFIFPGIFVVLV 294 >gi|239943899|ref|ZP_04695836.1| putative integral membrane protein [Streptomyces roseosporus NRRL 15998] gi|239990353|ref|ZP_04711017.1| putative integral membrane protein [Streptomyces roseosporus NRRL 11379] gi|291447362|ref|ZP_06586752.1| integral membrane protein [Streptomyces roseosporus NRRL 15998] gi|291350309|gb|EFE77213.1| integral membrane protein [Streptomyces roseosporus NRRL 15998] Length = 295 Score = 77.9 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 55/132 (41%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I+ R P+ LD++ V AGL A+ + + P E R + Sbjct: 134 IWSAIRVRREHIERTLPDFLDVLAVVVSAGLGFRQALDRVAEKYEGPWSDELRITLRQMD 193 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+S ++ + R ++V+ F T + +LG + E L ++ +R A+ + Sbjct: 194 MGVSRRQAFEELRRRNDSEQVAMFVTTLQQGEELGAPIVETLIQIANDMRRTDAQNARRK 253 Query: 121 ALSMEAKASAWI 132 A KA+ + Sbjct: 254 AAKAVPKATFAV 265 >gi|220922784|ref|YP_002498086.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] gi|219947391|gb|ACL57783.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] Length = 319 Score = 77.9 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 67/158 (42%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 +K+ KR A+ +P+ALD+++ V +G+ + + + + ++ + E Sbjct: 163 LKNQTTKRQAEIKKHWPDALDLMLICVESGMAIEHSFRRVSAEMANQSIVLAEELALTTA 222 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + L+ V ST + + G + +AL L++ RD++ +A Sbjct: 223 ELSYLTDRRIAYENLAMRTGLESVKAVSTALVQAERYGTPVGQALRVLAQESRDQRMNEA 282 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A ++ K + +I + ++ +P + + Sbjct: 283 EKKAAALPPKLTVPMILFFLPVLFVVI--LTPAMVQIF 318 >gi|329890992|ref|ZP_08269335.1| bacterial type II secretion system protein F domain protein [Brevundimonas diminuta ATCC 11568] gi|328846293|gb|EGF95857.1| bacterial type II secretion system protein F domain protein [Brevundimonas diminuta ATCC 11568] Length = 330 Score = 77.9 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 62/148 (41%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 +K++I KR A + FP++LD+++ V +G+ + A+ + + + E + Sbjct: 169 LKNMIDKRRASIMAAFPDSLDLLLICVESGMSIEAAIQKVSQEVGGQSIELAEELSLLSA 228 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + M + + +T ++ G L AL +++ R+ + A Sbjct: 229 ELSYLPDRRMAYEGMAKRTQHPGIKAVATAMTQAETYGTPLGSALRVMAKENRELRLSAA 288 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ AK + +I + ++ Sbjct: 289 EKKAAALPAKLTVPMILFFLPVLFVVIL 316 >gi|238755455|ref|ZP_04616795.1| hypothetical protein yruck0001_3320 [Yersinia ruckeri ATCC 29473] gi|238706296|gb|EEP98673.1| hypothetical protein yruck0001_3320 [Yersinia ruckeri ATCC 29473] Length = 165 Score = 77.9 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 70/161 (43%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + + +G ++ + + + +EF + +LG + + R E Sbjct: 1 MNMAASSGANLNQILERCGKEIQGELGNEFNLIYRRLNLGEAPEIVFNDAYRKFNYAEFH 60 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 FF++VI + + GG LS+ + + + + + +K + ++ + + + ++ +P + Sbjct: 61 FFTSVILLNIKQGGQLSDLIKKMHKGITESNKLKQRKAIMTAQIRMTTNVVSLIPIVFTA 120 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +Y+ P + L + G ++ ++GI ++R MI Sbjct: 121 FLYYIDPNSIETLWSQDVGKEIISYIVISEILGIFIIRNMI 161 >gi|260892669|ref|YP_003238766.1| Flp pilus assembly protein TadB-like protein [Ammonifex degensii KC4] gi|260864810|gb|ACX51916.1| Flp pilus assembly protein TadB-like protein [Ammonifex degensii KC4] Length = 285 Score = 77.9 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 82/173 (47%), Gaps = 3/173 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL---SESIS 70 +P AL + +++ G A+ + P+R F V+ S E++ Sbjct: 105 HQYPMALAALASAMQGGCSFYQALEQVTPTLRPPMRDVFADVLRRVRTSTSPRAYEEAVL 164 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + +++ + + + + GGNL E L +L + L +R++ + V A++ EA+ +A Sbjct: 165 EVAKAAGFPDLNSLAMSVGLYQRTGGNLVEVLDHLVKCLYERESDRRYVAAVTAEARVTA 224 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + +LPF + + +P +M + + G+ L+ A +L+G V+R M+ Sbjct: 225 AFLSALPFALMGVFRAVNPEFMRPVFHTLWGNALVVWVALMVLLGNAVVRRMV 277 >gi|120602154|ref|YP_966554.1| type II secretion system protein [Desulfovibrio vulgaris DP4] gi|120562383|gb|ABM28127.1| type II secretion system protein [Desulfovibrio vulgaris DP4] gi|311234268|gb|ADP87122.1| Type II secretion system F domain protein [Desulfovibrio vulgaris RCH1] Length = 323 Score = 77.9 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 73/158 (46%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + IK+R + ++ P+ALD++V V AG+ + A+A + + +S + E + I Sbjct: 160 LSSRIKERRQEIINALPDALDLLVVCVEAGMGLDQALARVAKELQSTSPVLAEELQLSIL 219 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S ++++ + + +++V+ T+I G +++ L S +R + +A Sbjct: 220 ELRAGKSRADTLKNLAARVAIEDVNSLVTLIIQADAFGTSIASTLRVYSDTMRTTRFQRA 279 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + A M K ++ + + V P ++ ++ Sbjct: 280 EEIAAKMPVKLLFPLVFCILPALF--VTIMGPAFIKLM 315 >gi|291451546|ref|ZP_06590936.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291354495|gb|EFE81397.1| conserved hypothetical protein [Streptomyces albus J1074] Length = 296 Score = 77.9 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 59/144 (40%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++ R P+ LD++ V +GL A+ + + P E R + Sbjct: 135 IWQAVRDRREVIDRTLPDFLDVLAVVVSSGLGFRQALDRVAERYEGPWADELRITLRQMD 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+S ++ + R ++V+ F + + +LG +++ L ++ +R ++ + Sbjct: 195 MGVSRRQAFDELRRRNSSEQVAQFVSALQQGEELGSPIADTLIQIATDMRRTDAQNSRRR 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144 A KA+ + L L+ Sbjct: 255 AAKTIPKATMVTLVFLLPATMILI 278 >gi|317123667|ref|YP_004097779.1| type II secretion system F domain [Intrasporangium calvum DSM 43043] gi|315587755|gb|ADU47052.1| Type II secretion system F domain [Intrasporangium calvum DSM 43043] Length = 306 Score = 77.9 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 69/158 (43%), Gaps = 2/158 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + ALD++ V AG A+ + + P+ EF RV+ +G S S Sbjct: 151 RRQEQVATGLAEALDMLTVCVEAGQGFDAALVQVARSTDGPISGEFARVLSEVQIGKSRS 210 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E+ + + + L +V F + I +LG ++ L + +R + +A+ +A + Sbjct: 211 EAFAGLGDRVSLSDVKNFVSAIIQADKLGIPIASVLREQTAAMRLSRRQRAEEKAQKVTV 270 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 K ++ + + ++ PG + ++ G++L Sbjct: 271 KILFPLLLCIFPAMFVVI--LGPGIIRMITTLFGGNLL 306 >gi|297202077|ref|ZP_06919474.1| integral membrane protein [Streptomyces sviceus ATCC 29083] gi|297148030|gb|EDY58317.2| integral membrane protein [Streptomyces sviceus ATCC 29083] Length = 296 Score = 77.9 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 62/162 (38%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I+ R P+ LD++ V AGL A+ + + P E R + Sbjct: 135 IWSAIRVRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVASKYEGPWADELRITLRQMD 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+S ++ + + R ++V+ F T + +LG + + L +L++ +R A+ + Sbjct: 195 LGMSRRQAFAELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRK 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162 A KA+ I + L+ G Sbjct: 255 AARAVPKATMMITTFMVPATMLLLAAGLLLGSGTDFGTITGK 296 >gi|264678228|ref|YP_003278135.1| type II secretion system protein [Comamonas testosteroni CNB-2] gi|262208741|gb|ACY32839.1| type II secretion system protein [Comamonas testosteroni CNB-2] Length = 303 Score = 77.9 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 71/158 (44%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 ++ + +R + ++FP+A D+++ V AG+ + A+ + + S+ + E Sbjct: 137 LRWMASRRKREIFENFPDAADLMLVCVEAGMGLDAALGKVTDEIRIKSEALAEELHWTNL 196 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+ + + E+ F+ +++ + G ++ E+L S LR ++ M+A Sbjct: 197 EMRAGSTREKSLRNLAARTGVDEIHTFTAMLTQADRFGTSIGESLRVFSDDLRHKRQMRA 256 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + A + K ++ + + + P + ++ Sbjct: 257 EELAAKIPTKMLLPLVTCIFPAII--MVVLGPAIIRIV 292 >gi|118474017|ref|YP_890388.1| type II secretion system protein F [Mycobacterium smegmatis str. MC2 155] gi|118175304|gb|ABK76200.1| bacterial type II secretion system protein F domain [Mycobacterium smegmatis str. MC2 155] Length = 210 Score = 77.9 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 63/183 (34%), Gaps = 2/183 (1%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + + R + ALD++V +R G DA G+S PV R V L Sbjct: 24 RAAAQHRRDE-SAALQGALDVLVGELRVGAHPVDAFGAAAGESGGPVAEGMRAVAARARL 82 Query: 62 GLSLSESISRMVRYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++ + + R L + + G L + + +R+ A+V+ Sbjct: 83 GADVAAGLDDVARASQLPGHWQRLAVCWRLAQTHGLALGTLMRAAHEDIVERERFSARVR 142 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A + +A ++ LP L + L+ G LL + G++ Sbjct: 143 AAMAGPRTTALVLAGLPLAGIALGQAIGAAPVAFLVASGAGGWLLVIGVVLACAGLLWSD 202 Query: 181 LMI 183 + Sbjct: 203 RIT 205 >gi|289641001|ref|ZP_06473170.1| type II secretion system protein [Frankia symbiont of Datisca glomerata] gi|289509121|gb|EFD30051.1| type II secretion system protein [Frankia symbiont of Datisca glomerata] Length = 286 Score = 77.9 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 72/184 (39%), Gaps = 3/184 (1%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + R + +P+ +D + +VRAG+ + + +A + + P+R F R E Sbjct: 96 RRRRTRMHDLRELWPDVVDNLASAVRAGMSLPEGLASVGVRGPVPLRPAFTRFGEDYRAT 155 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQA 121 S S S+ R+ + + + + G +L L LS LR+ +A+++ Sbjct: 156 GSFSASLDRLADDLADPIADRIIESLRMAREVGGTDLGRLLRTLSTFLREDARTRAELET 215 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 +A + P+ V ++ + P G ++L ++ M+M+ Sbjct: 216 RQSWTVNAARLALGAPWVVLLMLATRGETVRA--YDSPTGVVVLVTGGGVSVLAYMIMKW 273 Query: 182 MINF 185 + Sbjct: 274 IGRL 277 >gi|30248610|ref|NP_840680.1| type II secretion system protein [Nitrosomonas europaea ATCC 19718] gi|30180205|emb|CAD84507.1| Bacterial type II secretion system protein [Nitrosomonas europaea ATCC 19718] Length = 406 Score = 77.9 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 19/167 (11%), Positives = 48/167 (28%), Gaps = 6/167 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 D + +++G+P+ A ++ S+ V + G SL+ + + Sbjct: 65 DKDITLFTRQLATMMKSGVPLLQAFDIVGKGHSNRAVGKLLMDIKSDVETGNSLANAFRK 124 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + G L L L+ + +K K+++ + Sbjct: 125 HPL-----YFDSLFCNLVAAGEAAGILDSLLDRLATYKEKIQAIKGKIKSALFYPISIIV 179 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + + V D L+ +A + + Sbjct: 180 VAFVITAVIMIFVIPAFKELFQGFGADLPAPTLMVMAISDFFVDYWW 226 Score = 40.5 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 16/128 (12%), Positives = 40/128 (31%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + AG+P+ +A+ + G + + V E R ++ +S S + Sbjct: 277 RTLSTMFAAGVPLVEALNSVAGAAGNQVYFEATR-----NIQNEVSTGSSLVDAMTATNV 331 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + G+L L+ ++ + + + ME + + V Sbjct: 332 FPSMVLQMVSIGEESGSLDAMLSKIADFFEAEVDDAVEALSSLMEPIIMVVLGTLIGGMV 391 Query: 141 STLVYFTS 148 + Sbjct: 392 VAMYLPIF 399 >gi|193782687|ref|NP_436096.2| Pilus assembly protein [Sinorhizobium meliloti 1021] gi|307304378|ref|ZP_07584129.1| Type II secretion system F domain protein [Sinorhizobium meliloti BL225C] gi|193073143|gb|AAK65508.2| Pilus assembly protein [Sinorhizobium meliloti 1021] gi|306902580|gb|EFN33174.1| Type II secretion system F domain protein [Sinorhizobium meliloti BL225C] Length = 321 Score = 77.5 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 65/158 (41%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +++ I KR +P ALD+++ +V AG+ + A + + S E Sbjct: 164 VRNRITKRQQSIRRSWPEALDLLLITVEAGMGIESAFRKVGEEIGTQSPETAEEILLTTA 223 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + + ++ V T + + G L +AL +++ RD + +A Sbjct: 224 ELSYLQDRRQAFENLGQRTGVEGVRAVVTSLIQAEKYGTPLGQALRVMAQENRDMRMSEA 283 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A ++ K + +I + ++ +P + ++ Sbjct: 284 EKRAAALPPKLTVPMILFFLPVLFAVI--ITPAVIQIM 319 >gi|77919352|ref|YP_357167.1| Flp pilus assembly protein TadC [Pelobacter carbinolicus DSM 2380] gi|77545435|gb|ABA88997.1| Flp pilus assembly protein TadC [Pelobacter carbinolicus DSM 2380] Length = 326 Score = 77.5 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 66/158 (41%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 + +++ R + + P+ALD++V V AGL + + + + EF Sbjct: 162 LGFVVRSRQNRIMRALPDALDLMVVCVEAGLGLDMTFRRVGEEIRPLSHDLSDEFHLTNL 221 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G +E M + EVS T++ S+ G +L++AL S +R ++ A Sbjct: 222 EIRAGKPRNECFKNMSLRTGVPEVSNLMTILIQTSRFGTSLAKALRVHSDAMRIKRRQIA 281 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A K ++ + + ++ PG + ++ Sbjct: 282 EEKAAKSTVKLIFPLVFFIFPAIFVVL--VGPGVIRII 317 >gi|257095698|ref|YP_003169339.1| type II secretion system protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048222|gb|ACV37410.1| type II secretion system protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 412 Score = 77.5 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 21/183 (11%), Positives = 53/183 (28%), Gaps = 10/183 (5%) Query: 1 MKHLIKKR----TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRV 55 + + K+R D + ++AG+P+ ++ + V + Sbjct: 55 VSKITKQRFRGGRKISEKDIALFTRQLATMMKAGVPLLQTFEIVGRGHDNPAVGKLLLDI 114 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 G SLS++ + + + + G L L L+ + Sbjct: 115 KADVETGSSLSQAFRKYPLH-----FDLLYCNLVAAGEQAGILESLLDRLATYKEKMIAI 169 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K+K+++ A + + + V D + +A + ++ Sbjct: 170 KSKIKSALFYPVAIIVVAFIITAVIMIFVIPAFKEVFKSFGADLPAPTQIVIAMSDFVVD 229 Query: 176 IMV 178 Sbjct: 230 YWW 232 >gi|315497460|ref|YP_004086264.1| type II secretion system f domain protein [Asticcacaulis excentricus CB 48] gi|315415472|gb|ADU12113.1| Type II secretion system F domain protein [Asticcacaulis excentricus CB 48] Length = 326 Score = 77.5 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 65/159 (40%), Gaps = 4/159 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + + KR A + FP+ALD+++ V AG+ + A+ + + +S + E ++ Sbjct: 165 ISNAASKRRASIVTAFPDALDLLLICVEAGMSIEAALQKVSQEIGSASIELAEELSLLVA 224 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + R + T + + G L AL +++ R+ + A Sbjct: 225 ELSYLPERRMAYEGLARRTNYPGIKSVCTAMIQAEKYGTPLGTALRVMAKENRELRLSAA 284 Query: 118 KVQALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A ++ A+ I+ LP ++ M+++ Sbjct: 285 EKKAAALPAQLTVPMIVFFLPVLFVVILGPAILNIMDMM 323 >gi|27376545|ref|NP_768074.1| pilus assemble protein [Bradyrhizobium japonicum USDA 110] gi|27349686|dbj|BAC46699.1| pilus assemble protein [Bradyrhizobium japonicum USDA 110] Length = 324 Score = 77.5 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 +K+ I KR FP+ALD+++ + +G+ V A + + + EF Sbjct: 166 LKNAISKRQLSIKRAFPDALDLLLICIESGMSVEMAFRKVATEIVGQSIALSEEFTLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + R L+ V + + G L +L +++ RD + +A Sbjct: 226 ELSYLQDRKVAYENLARRTGLEGVKSVCLALQQAERYGTPLGHSLRVMAQENRDMRMTEA 285 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 286 EKKAAALPPKLTVPMILFFLPVLFVVIL 313 >gi|328883372|emb|CCA56611.1| putative integral membrane protein [Streptomyces venezuelae ATCC 10712] Length = 321 Score = 77.5 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 63/162 (38%), Gaps = 1/162 (0%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 +V +RAG + A++ ++ + +E V+ G + E++ + ++ Sbjct: 156 VVGELRAGWQPAQALSFAARET-GALGAEEAAVLAAARFGGDVPEALRKAADQDGADGLA 214 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + V G L+ L L LRD + + +++A A A+ ++ LP Sbjct: 215 GMAACWQVAVDGGAGLAAGLDRLEAALRDHREQRERLRAELAGAWATVAVLAVLPLAGVA 274 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + VL++ P G L V A G+ ++ Sbjct: 275 LGAALGADPLRVLLHTPAGLGCLVVGGALEAAGLWWAARIVR 316 >gi|219883050|ref|YP_002478214.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] gi|219862056|gb|ACL42397.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] Length = 293 Score = 77.5 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 63/145 (43%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ ++R + P+ LD ++ +V AGL A+A + P+ +E R ++ Sbjct: 137 LQSRGQERQKLIGLELPDTLDQMMIAVEAGLGFDSAMARAGDKGKGPLANELVRTLQDMQ 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S E+ + + ++ F + G ++S+ L + +R ++ +A+ + Sbjct: 197 IGRSRREAYEALGERTSVPDLDAFIRSVVQADIYGISISKVLRTQAGEIRLKRRQRAEEK 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145 A+ + K ++ + + + Sbjct: 257 AMQIPVKVIIPLMLCILPVLFIALL 281 >gi|312136915|ref|YP_004004252.1| type ii secretion system f domain protein [Methanothermus fervidus DSM 2088] gi|311224634|gb|ADP77490.1| Type II secretion system F domain protein [Methanothermus fervidus DSM 2088] Length = 339 Score = 77.5 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 63/164 (38%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R + P+ L + +RAG+ + A+ + P+ E +R +G S Sbjct: 92 ERRRGTIEESTPDFLTQLASELRAGISLESAIDDLTKYGEGPLYDELKRTAIEIKMGRSF 151 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S+ M + ++++ +IS + G +LS L +++ LR +K + ++ M Sbjct: 152 ESSLIAMANRLKSEQLNRTFRMISEGRRAGASLSRVLESVAEDLRQVLALKRERKSNVMM 211 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 I G + + + + L + + + Sbjct: 212 YAMFFLIAGLIGAPLVVGLISIVIRFFIDLYSASGAIAGMTLVG 255 >gi|292655192|ref|YP_003535089.1| type IV pilus biogenesis complex membrane subunit [Haloferax volcanii DS2] gi|291371902|gb|ADE04129.1| type IV pilus biogenesis complex membrane subunit [Haloferax volcanii DS2] Length = 707 Score = 77.5 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 58/173 (33%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L K+R P+ LD + AGL V ++ + P+ E R + G Sbjct: 479 LRKRRIRAIERSMPDFLDRLASVNEAGLTVVQSLRRVSASDLGPLGDEVERAVRDIDWGA 538 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++ RM R VS T+I+ G+L+ L + +D + + + Sbjct: 539 DAQTALRRMDRRTASPMVSRSVTLITNAMSASGDLAPVLRIAANEAQDSRRLARERNQEM 598 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + +I + + + + + G + ++ G+ Sbjct: 599 LTYLLVIYISFLVFLGIIAALTVSFIPAVEQASAGGVGSGEVAGVSSGAFSGL 651 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/181 (11%), Positives = 53/181 (29%), Gaps = 4/181 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIET 58 + + R+++ P + + R+G+P + + E V+ Sbjct: 161 LTERARTRSSEIEATLPRTVAFVFALSRSGMPFPQVLETLARNEAIYGEAAREVSIVVRD 220 Query: 59 QHLGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + S+ M P + F+ ++ G NLS L ++ + Sbjct: 221 MDAFGTDVLSSLQTMATRTPSPSLEEFAENLASVLGSGRNLSSFLQEQYERFQEEAEAQQ 280 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + A ++ + + + G + ++ V G + Sbjct: 281 QQYLDLLSTFAEVYVTVLVAGPLFFITVLVVIGLVLADTLTLI-RIVGYVGIPLASFGFV 339 Query: 178 V 178 V Sbjct: 340 V 340 >gi|149911401|ref|ZP_01900019.1| hypothetical putative tight adherence TadC-related transmembraneprotein [Moritella sp. PE36] gi|149805509|gb|EDM65514.1| hypothetical putative tight adherence TadC-related transmembraneprotein [Moritella sp. PE36] Length = 325 Score = 77.5 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 67/158 (42%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +K + K+R A FP+ALD+++ +GL + ++ + + + + E V Sbjct: 163 LKKIAKRRMADLKRYFPDALDLLIVCCESGLGLLESFQRVAKELQLAHPYLSYELNLVCS 222 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL+L +++ L+++ ++VI +LG ++ + S R+++ A Sbjct: 223 KVRYGLTLQQALKEFSDRTGLEDIRGLNSVIVQSLRLGTGVAATIRIYSDEYREKRLQAA 282 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + A + K ++ + + P + V+ Sbjct: 283 EENAAKLGVKMIFPMMCCIWPS--FFIVAIGPAVLKVM 318 >gi|86147459|ref|ZP_01065771.1| Flp pilus assembly protein TadC [Vibrio sp. MED222] gi|85834752|gb|EAQ52898.1| Flp pilus assembly protein TadC [Vibrio sp. MED222] Length = 323 Score = 77.5 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 74/158 (46%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + + K R K + P+ALD++V +GL + A+ + + + E V Sbjct: 158 LSKMQKDRQRKIKNGVPDALDLLVVCTESGLGFNAALGRVANELYISQPELADELDTVFA 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+++ +++S++V L E+ +++S S++GG+L++ L + + RD++ A Sbjct: 218 KIQAGVTMPDALSQLVERTGLHELDGLVSLLSHASRMGGSLAQTLRDYTEDFRDKRQQAA 277 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + A + K ++ + C + PG M V+ Sbjct: 278 EEIAAKIPTKMLFPMLLFIWPC--FFIVALGPGMMIVM 313 >gi|304320652|ref|YP_003854295.1| hypothetical protein PB2503_05397 [Parvularcula bermudensis HTCC2503] gi|303299554|gb|ADM09153.1| hypothetical protein PB2503_05397 [Parvularcula bermudensis HTCC2503] Length = 338 Score = 77.5 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 59/148 (39%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + +L+ KR K FP++LD+++ V +G+ + A+ + + S + E+ Sbjct: 167 VHNLVTKRKQKIQLSFPDSLDLLLICVESGMSIEAALQKVTEEVAASCPELAEEYGLTTA 226 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + L+ V +T + G L +L ++ R+ + A Sbjct: 227 ELSYLQDRKVAYHNLGERTGLEGVKSVTTALIQSEVYGTALGASLRVMAAENREIRMQNA 286 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 287 EKKAAALPPKLTVPMILFFLPVLFVVIL 314 >gi|315606115|ref|ZP_07881146.1| type II secretion system protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315312397|gb|EFU60483.1| type II secretion system protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 292 Score = 77.5 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 66/177 (37%), Gaps = 3/177 (1%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 +P +D +V VRAG + + + + P+R F + ++ Sbjct: 107 KTVRAAWPEVVDAMVSGVRAGTSLPQVLCELADEGPQPLRFAFDAFSRDYSANGRFASAL 166 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 RM + + + G +L+ L +L+ +LR+ ++ +++A Sbjct: 167 DRMKDEVRDPVADRIVEALRIARSVGGADLTRLLQDLASLLREDARVRGELEARQSWTVG 226 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +A + + P+ V L+ + N P G +L A ++ + M+ + Sbjct: 227 AARLGLAAPWVVLLLLSGGG--GSAAVWNSPGGIAVLCAGAGMCVVAYLAMKALGRL 281 >gi|197337342|ref|YP_002157817.1| bipartite nuclear localization signal containing protein [Vibrio fischeri MJ11] gi|197314594|gb|ACH64043.1| bipartite nuclear localization signal containing protein [Vibrio fischeri MJ11] Length = 293 Score = 77.5 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 59/159 (37%), Gaps = 4/159 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 + K K P LD++ V G+ + +++ + + + + Sbjct: 135 LSSRKKALEEKLSGQLPYLLDLLAMCVHTGMTIESSLSYLAKEMQGFDKDLAHMIARTND 194 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + L ++ + +P E+ F + G ++ E L L+ +R + + + Sbjct: 195 RANIVGLEPALDELYVRVPTNEMRSFVMTLKQSLHYGSSIYEILNTLAADIRSVRLLSLE 254 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + + AK S +I + V L+ PG M ++ Sbjct: 255 EKVGKLAAKMSVPLILFIMIPVVILIAA--PGVMRMMTG 291 >gi|90411198|ref|ZP_01219211.1| hypothetical putative tight adherence TadC-related transmembrane protein [Photobacterium profundum 3TCK] gi|90328044|gb|EAS44365.1| hypothetical putative tight adherence TadC-related transmembrane protein [Photobacterium profundum 3TCK] Length = 224 Score = 77.1 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 72/158 (45%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 ++ KKR K + FP+ALD++V + AGL A+ + + + +E + V Sbjct: 63 LQKKAKKRIRKLSNAFPDALDLLVVTTEAGLGFLAALNRVANEIDAISPELSNELQIVCR 122 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 LG+ + ++++ + L E+ ++IS +LG ++ + L + RDR+ KA Sbjct: 123 KVRLGVPMPIALAQFIERTGLLELQGLVSIISQSVKLGSSMGDTLREYAIEFRDRRMQKA 182 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A + K ++ + V P + VL Sbjct: 183 EEEAAKIGTKMIFPLVTCIWPG--FFVVAVGPAIIAVL 218 >gi|32477705|ref|NP_870699.1| type IV fimbrial assembly protein PilC [Rhodopirellula baltica SH 1] gi|32448259|emb|CAD77776.1| type IV fimbrial assembly protein PilC [Rhodopirellula baltica SH 1] gi|327537902|gb|EGF24602.1| Type II secretion system F domain protein [Rhodopirellula baltica WH47] Length = 479 Score = 77.1 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 62/168 (36%), Gaps = 6/168 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AGLP+ ++ ++ Q +++ V + G +LSE++++ + Sbjct: 75 FTRQLSILQDAGLPILRSLKILEGNQKPGKLKNALMDVCDEIEGGSTLSEAMAKCPK--- 131 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 S + + GG L L L+ L +++K KV+ + + + Sbjct: 132 --VFSRLYVNMIKAGEAGGALETILNRLADFLESAESLKRKVKGALIYPVIVVLVATLIL 189 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + T + D +L +A + + G + +++ Sbjct: 190 TFIMLFIVPTFEKMFDEFGLDLPAPTVLLIAMSNYIAGYWFLLILMPI 237 >gi|326318390|ref|YP_004236062.1| Type II secretion system F domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375226|gb|ADX47495.1| Type II secretion system F domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 405 Score = 77.1 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 23/182 (12%), Positives = 56/182 (30%), Gaps = 10/182 (5%) Query: 3 HLIKKRT---AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIE 57 + K+R K D + ++AG+P+ A ++ ++ V + Sbjct: 51 KIKKRRMRGGKKIKPKDIALFTRQMATMMKAGVPLLQAFDIVGRGNTNASVTKLLNDIRA 110 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G SL+ + + + + G L L L+ + + +K+ Sbjct: 111 DVETGTSLNAAFRKYPM-----YFDSLYCNLVEAGEAAGILEALLDRLALYMEKTEAIKS 165 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 K+++ M A + + + V D L + + + + Sbjct: 166 KIRSALMYPTAVIIVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLFVMGVSEIFVKWW 225 Query: 178 VM 179 + Sbjct: 226 WL 227 Score = 35.9 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 16/131 (12%), Positives = 42/131 (32%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ +A+ + G S + V + R+ + G SL+ ++ Sbjct: 275 WTRTLSTMFAAGVPLVEALDSVGGASGNSVYAMATERIQQEVSTGTSLTAAMGNA----- 329 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G++ L + + + + ME ++ + Sbjct: 330 -NVFPSMVIQMCAIGEESGSIDHMLGKAADFYEEEVDEMVAGLSSLMEPIIIVFLGTIIG 388 Query: 138 FCVSTLVYFTS 148 V ++ Sbjct: 389 GIVVSMYLPIF 399 >gi|229829729|ref|ZP_04455798.1| hypothetical protein GCWU000342_01826 [Shuttleworthia satelles DSM 14600] gi|229791718|gb|EEP27832.1| hypothetical protein GCWU000342_01826 [Shuttleworthia satelles DSM 14600] Length = 231 Score = 77.1 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 81/188 (43%), Gaps = 6/188 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ------SSDPVRSEFRRV 55 K ++R FL +F + L ++V ++R G +A + + + P+ + +++ Sbjct: 38 KRREQRRYGIFLREFQDYLKLLVAALRNGYSAENAFRLAEEELGKITPADSPLLTAVQKL 97 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 L + L E + M R + +E + +++ +LGG+ S L +R + R + Sbjct: 98 SARIRLQMPLEEGLVEMARELGYEEAVNLADLMAFARRLGGDYSRFLERSARSIASRIEL 157 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K ++ A + ++ +P V V T+ Y+ L P G +++ + L Sbjct: 158 KEEMAADLAAKEYEQRVMSVMPLAVLLYVRLTAGAYLEPLYRPPLGTIMMSLCLGLYLGM 217 Query: 176 IMVMRLMI 183 ++ +I Sbjct: 218 FLLGERII 225 >gi|119773598|ref|YP_926338.1| MSHA biogenesis protein MshG [Shewanella amazonensis SB2B] gi|119766098|gb|ABL98668.1| MSHA biogenesis protein MshG [Shewanella amazonensis SB2B] Length = 406 Score = 77.1 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 18/177 (10%), Positives = 54/177 (30%), Gaps = 6/177 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLS 66 R L++ + R+G+P+ A+A + + ++ + G LS Sbjct: 59 RRRVSLEELQIFTRQMYSLTRSGIPILRAIAGLSETTHSQQMKQALDDISVQLTAGRPLS 118 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + + G L + LS L + + ++++ Sbjct: 119 SAMNHHPE-----VFDALFVSMVHVGENTGKLEDVFLQLSGYLEREQETRRRIKSAVRYP 173 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 I ++ +V + + + +A + + + ++ Sbjct: 174 TFVLIAISLAMVILNIMVIPKFADMFSRFGAELPWATRILIATSNFFVNYWWLLALL 230 Score = 41.6 bits (96), Expect = 0.047, Method: Composition-based stats. Identities = 11/132 (8%), Positives = 36/132 (27%), Gaps = 5/132 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + AG+P++ A++++ + + + + S + Sbjct: 270 LSRYCRSFAMMMGAGVPMTQALSLVADAVDNAYMHDKIVAMRR-----GIESGESMLRVS 324 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + + G L + L + + + K +E + G Sbjct: 325 NHSKLFTPLVLQMVAVGEETGQLEQLLNDAADFYEGEVDYDLKNLTAKLEPILIGIVAGI 384 Query: 136 LPFCVSTLVYFT 147 + + Sbjct: 385 VLILALGIYLPM 396 >gi|92116008|ref|YP_575737.1| type II secretion system protein [Nitrobacter hamburgensis X14] gi|91798902|gb|ABE61277.1| type II secretion system protein [Nitrobacter hamburgensis X14] Length = 325 Score = 77.1 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 60/148 (40%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 +K+ I KR FP+ALD+++ + +G+ + A + + + EF Sbjct: 166 LKNAITKRQISIKRAFPDALDLLLICIESGMSIEVAFRKVSTEIGSQSVALAEEFTLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + ++ V + + G L+++L +++ RD + +A Sbjct: 226 ELSYLQDRKVAYENLAKRTGVEGVKSVCLALQQSERYGTPLAQSLRVMAQENRDMRMTEA 285 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 286 EKKAAALPPKLTVPMIVFFLPVLFVVIL 313 >gi|317498624|ref|ZP_07956917.1| hypothetical protein HMPREF0996_01899 [Lachnospiraceae bacterium 5_1_63FAA] gi|316894111|gb|EFV16300.1| hypothetical protein HMPREF0996_01899 [Lachnospiraceae bacterium 5_1_63FAA] Length = 252 Score = 77.1 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 74/190 (38%), Gaps = 5/190 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-----VRSEFRRVIE 57 H + + K +F + I S+ AG + +A+ + E + +I Sbjct: 63 HKVHREKKKLRKEFREMMISIGNSLSAGYSIENALKTAKNDLEMYEEHSLLAKELQLLIN 122 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + M ++ L+E F+ VIS+ + GGNL E N L K Sbjct: 123 KLKMNEPVDNLLFDMAEHVGLEEFYQFAQVISIAKKSGGNLIEITENTIEHLSQAIQTKE 182 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++ + + I+ +P+ + V +PGY ++L G ++ ++ + I + Sbjct: 183 EIHTMIAAKQMEKKIMSVMPYFILLYVRIANPGYFDILYESFAGVLVAVISLLCLWIADI 242 Query: 178 VMRLMINFDV 187 + ++ Sbjct: 243 WAERVTEIEI 252 >gi|299132291|ref|ZP_07025486.1| Type II secretion system F domain protein [Afipia sp. 1NLS2] gi|298592428|gb|EFI52628.1| Type II secretion system F domain protein [Afipia sp. 1NLS2] Length = 325 Score = 77.1 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 57/148 (38%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 +K+ I KR FP+ALD+++ V +G+ + A + + + EF Sbjct: 166 LKNAISKRQLSIKRAFPDALDLLLICVESGMSIEAAFRKVSFEIGSQSVALAEEFTLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + + V + + G L + L +++ RD + +A Sbjct: 226 ELSYLQDRKTAYENLQKRTGIDGVKSVCMALMQSERYGTPLGQTLRVMAQENRDMRMTEA 285 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 286 EKKAAALPPKLTVPMIVFFLPILFVVIL 313 >gi|327441712|dbj|BAK18077.1| type II secretory pathway, component PulF [Solibacillus silvestris StLB046] Length = 391 Score = 77.1 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 58/168 (34%), Gaps = 6/168 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISR 71 DF +RAG+ + +A ++ Q +S P++ +V E G+ S+++ + Sbjct: 51 TQDFVIYCRQFATLIRAGVSLVEATNILAKQSTSKPLKKALEKVEEDVRAGIPFSDAVQK 110 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + + GN+ + L L+ + KVQ+ Sbjct: 111 HPKVFP-----ELFVNMMRSGEATGNIDDTLDRLANSYEKSFRLIKKVQSTLTYPAMLLI 165 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +I + F + + T + + + VA L + Sbjct: 166 LIVVVVFFMLIFIVPTFVESFESMDAELPTLTVWTVALGEWLRKYWWL 213 >gi|170740616|ref|YP_001769271.1| type II secretion system protein [Methylobacterium sp. 4-46] gi|168194890|gb|ACA16837.1| type II secretion system protein [Methylobacterium sp. 4-46] Length = 321 Score = 77.1 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 66/158 (41%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 +K+ KR A+ ++P+ALD+++ V +G+ + A + + ++ + E Sbjct: 163 LKNQTDKRQAQIRKNWPDALDLLLICVESGMAIELAFRRVGVEMANQSIVLAEELALTTA 222 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + L V T + + G + +AL L++ RD++ +A Sbjct: 223 ELSYLTDRRVAYDNLAIRTGLDSVKAVCTALIQAERYGTPIGQALRVLAQESRDQRMNEA 282 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A ++ K + +I + ++ +P + V Sbjct: 283 EKKAAALPPKLTVPMILFFLPVLFVVI--LTPAMVQVF 318 >gi|299532601|ref|ZP_07045990.1| type II secretion system protein [Comamonas testosteroni S44] gi|298719404|gb|EFI60372.1| type II secretion system protein [Comamonas testosteroni S44] Length = 303 Score = 77.1 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 68/148 (45%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 ++ + +R + ++FP+A D+++ V AG+ + A+ + + S+ + E Sbjct: 137 LRWMALRRKREIFENFPDAADLMLVCVEAGMGLDAALGKVTEEIRIKSEALAEELHWTNL 196 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +++ + + E+ F+ +++ + G ++ E+L S LR ++ M+A Sbjct: 197 EMRAGSTREKALRNLAARTGVDEIHTFTAMLTQADRFGTSIGESLRVFSDDLRHKRQMRA 256 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + A + K ++ + + +V Sbjct: 257 EELAAKIPTKMLFPLVTCIFPAIIMVVL 284 >gi|241662160|ref|YP_002980520.1| type II secretion system protein [Ralstonia pickettii 12D] gi|240864187|gb|ACS61848.1| type II secretion system protein [Ralstonia pickettii 12D] Length = 313 Score = 77.1 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 71/160 (44%), Gaps = 5/160 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + IK+R + FP++LD+I+ V AGL + AV +V + E+ + Sbjct: 149 LAMKIKRRKRDIFEAFPDSLDLIMVCVEAGLGLDSAVLRVVEDMRDARPAMAHEYELLTL 208 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL+ +++ +++VS ++ + G +++E+L S +LR ++ M A Sbjct: 209 ELRAGLAREKALRNFAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRQMLA 268 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + +A + K +I L + V P + ++ Sbjct: 269 EERAAKIGTKVLFPLIFCLFPAL--YVVLLGPAGIQIMAG 306 >gi|87310969|ref|ZP_01093094.1| probable integral membrane protein [Blastopirellula marina DSM 3645] gi|87286259|gb|EAQ78168.1| probable integral membrane protein [Blastopirellula marina DSM 3645] Length = 288 Score = 77.1 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 68/147 (46%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ ++R + + P+ +D++V + G+ ++A++ + + + + E V Sbjct: 115 LRSCTQQRQKRLRESLPDFVDLVVTCLEGGMGAAEAISHVHQELTSTHADLSYELGLVAR 174 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 LG+SL +S RM ++EV ST + + G + EA+ LS +LR ++ +A Sbjct: 175 DGTLGISLDKSFRRMAERTGVEEVRTLSTFLEHSQRFGSAMGEAMHELSDMLRYQREQRA 234 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + +A K + + + ++ Sbjct: 235 EERAQQASVKILIPTLLFIFPTIFVVL 261 >gi|226310159|ref|YP_002770053.1| hypothetical protein BBR47_05720 [Brevibacillus brevis NBRC 100599] gi|226093107|dbj|BAH41549.1| conserved hypothetical membrane protein [Brevibacillus brevis NBRC 100599] Length = 311 Score = 77.1 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 56/144 (38%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K + R + D P LD + +++AG+ + A+ ++ P+R EF R + Sbjct: 148 LKKKARDRQHQLRYDLPEFLDTVSVTLQAGVSLDQALREVIKFFDGPIREEFSRFNQELD 207 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ ++ +++R E + +LG ++ + +R + K + Sbjct: 208 LGVQREKAYEQLLRRNDNPEFQMLIKALIQGMRLGVPIAVTFKAQAENMRRIRKELIKEK 267 Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144 A K + + L+ Sbjct: 268 AAKASPKVTLITTFIVTPTAIILI 291 >gi|83859362|ref|ZP_00952883.1| hypothetical protein OA2633_13195 [Oceanicaulis alexandrii HTCC2633] gi|83852809|gb|EAP90662.1| hypothetical protein OA2633_13195 [Oceanicaulis alexandrii HTCC2633] Length = 326 Score = 77.1 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 61/158 (38%), Gaps = 3/158 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + KR + FP++LD+++ V AG+ + A+ + + S + E Sbjct: 169 LSNQAAKRRDSIMQAFPDSLDLMLICVEAGMSIEAALHKVAAEIGTNSMELAEELSLTNA 228 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + L V +T + + G L +AL +++ RD + A Sbjct: 229 ELAYLQDRRAAFENLGMRTNLPGVKAVATALIQAERYGTPLGQALRVMAKENRDMRMSNA 288 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A ++ AK + +I + ++ + + Sbjct: 289 EKKAAALPAKLTVPMILFFLPVLFVVIIGPAAISFQNM 326 >gi|294631144|ref|ZP_06709704.1| integral membrane protein [Streptomyces sp. e14] gi|292834477|gb|EFF92826.1| integral membrane protein [Streptomyces sp. e14] Length = 295 Score = 77.1 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 61/144 (42%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I+ R P+ LD++ V AGL A+ + + P E R + Sbjct: 134 IWSAIRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVAARYEGPWADELRITLRQMD 193 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+S ++ + + R ++V+ F T + +LG + + L +L++ +R A+ + Sbjct: 194 LGMSRRQAFAELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRK 253 Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144 A KA+ I + L+ Sbjct: 254 AARAVPKATMMITTFMVPATMILL 277 >gi|94312040|ref|YP_585250.1| type II secretion system protein [Cupriavidus metallidurans CH34] gi|93355892|gb|ABF09981.1| Type IV pilus assembly protein PilC [Cupriavidus metallidurans CH34] Length = 421 Score = 77.1 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 18/166 (10%), Positives = 52/166 (31%), Gaps = 6/166 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71 D + ++AG+P+ ++ +I ++ + G S++ + R Sbjct: 81 EKDIAYFTRQLSTMLKAGVPLLQSIDIIARGHANPNFTQLLTVIRSDIESGSSMATAFRR 140 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + GG L L LS + +K ++++ + A Sbjct: 141 HPQ-----YFDTLYCNLIDAGEQGGILDALLERLSLYMEKSIALKGQIKSAMIYPIAVLT 195 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + ++ + V G + ++ + + + Sbjct: 196 VAFAVTVILMLFVIPAFKGVFSSFGASLPAPTMVVINISDFFVQYW 241 >gi|254515229|ref|ZP_05127290.1| type IV pilus biogenesis protein PilC [gamma proteobacterium NOR5-3] gi|219677472|gb|EED33837.1| type IV pilus biogenesis protein PilC [gamma proteobacterium NOR5-3] Length = 405 Score = 77.1 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 56/181 (30%), Gaps = 7/181 (3%) Query: 4 LIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHL 61 L R D + ++AG+P+ + ++ +P E + Sbjct: 55 LFSARKKPIKPADIAIFTRQMATMMKAGVPLVQSFDIVGDGLENPSMKELVNGIKNDVSA 114 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L+ S+S+ R+ + + G L L ++ + +KAK++ Sbjct: 115 GGGLALSLSKFPRH-----FDELFCSLVGAGESAGTLEVMLDRVATYKEKTEQLKAKIKK 169 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 A + + + V + D L+ + + + + + Sbjct: 170 ALTYPTAVIVVALVVSGILLVKVVPQFAETFSSFGADLPAFTLMVLRLSDFMQAWWFIIV 229 Query: 182 M 182 + Sbjct: 230 I 230 Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 38/130 (29%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + AG+P+ DA+ G + + V S I S + + P Sbjct: 275 FSRTLATTFNAGVPLVDALESTAGAAGNSVFSAAILQIRDDVTTGSTLYNSVKSTGLFPN 334 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L E L ++ + + + ME + + + Sbjct: 335 -----MLLQMISIGEESGQLDEMLDKVATHYEEAVDNSVDSLSSLMEPMIMSVLGVLVGG 389 Query: 139 CVSTLVYFTS 148 + + Sbjct: 390 LMIAMYLPIF 399 >gi|254478343|ref|ZP_05091722.1| Bacterial type II secretion system protein F domain [Carboxydibrachium pacificum DSM 12653] gi|214035701|gb|EEB76396.1| Bacterial type II secretion system protein F domain [Carboxydibrachium pacificum DSM 12653] Length = 301 Score = 77.1 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 81/183 (44%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++L ++R K + F + + ++ ++ + A ++ +P++ RV+ Sbjct: 115 LEYLGRRRIRKTEEQFRDFVKMLGAYLKMVPSFAGAFIKAAEEAENPLKEHTDRVVRKFE 174 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG L E++ + + + + ++ I ++ +LS ++ L +R M ++ Sbjct: 175 LGEDLEEALKEL-KNVESTYIKAWADSIIFAVRMKSDLSRVCERTAKKLYERIKMSNRIA 233 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVM 179 +++++AK+ + + + +SP ++ + P G +++ A I V+ Sbjct: 234 SMTVQAKSLMVSLAGVMIVMMAATVMSSPDFLRT-YSTPVGKVVIAYAVLSYFISTFYVL 292 Query: 180 RLM 182 + + Sbjct: 293 KKI 295 >gi|153006801|ref|YP_001381126.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5] gi|152030374|gb|ABS28142.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5] Length = 314 Score = 77.1 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 68/166 (40%), Gaps = 4/166 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + I R + P+ALD++V V AGL + A+ + G+ + + SE R Sbjct: 148 LSSRIANRLRQIDRALPDALDLLVTCVEAGLGLDAALQRVSGEIALAWPLLSSELRLTFL 207 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ + R+ E+ + ++ G +++ AL + +R R+ +A Sbjct: 208 EVRAGIPRMDGFRRLAARTGSPELRALAATLTQTELFGTSIASALRVQAEGIRIRRMQRA 267 Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162 + +A + K + I+ LP + ++ + M L+ G Sbjct: 268 EERAAYVAVKMTLPLILCILPSLFAVIIGPAAINIMKTLMPMLGGQ 313 >gi|89899611|ref|YP_522082.1| type II secretion system protein [Rhodoferax ferrireducens T118] gi|89344348|gb|ABD68551.1| type II secretion system protein [Rhodoferax ferrireducens T118] Length = 312 Score = 77.1 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 4/166 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + HL+ R + + FP+ALD++ V AGL A+ + S + E R V Sbjct: 147 LSHLVMVRQREIFESFPDALDLMTVCVEAGLGTEAAMMRVADDLQFKSPALADEMRLVNL 206 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G ++ + ++EV F T+IS + G +++ +L + +LR R+ +A Sbjct: 207 ELRAGAVRERALRNLAIRTGVEEVDGFVTMISQAERFGTSIAASLRIHAELLRTRRRQRA 266 Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162 + A + I P + L+ VL+ GH Sbjct: 267 EEAAAKIALKLLFPLIFCIFPSLMVVLMGPAMIQIYRVLLPTMGGH 312 >gi|78186531|ref|YP_374574.1| TadC protein [Chlorobium luteolum DSM 273] gi|78166433|gb|ABB23531.1| TadC protein [Chlorobium luteolum DSM 273] Length = 313 Score = 76.7 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 72/158 (45%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 ++ + ++R + + P+ +D++V +G+ + A+A I + + + EF + Sbjct: 153 LRFITQQRHERMRNSLPDMIDLMVVCTESGMGIDSAIARISREMARGNPDLAQEFYLSVL 212 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + E++ + L++++ T+ + G ++E+L S +LR R+ +A Sbjct: 213 EIRAGATRIEALRNLALRTNLKDMNDLVTMFVQADKFGTGMAESLRVQSDMLRSRRTQRA 272 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + A + K + ++ + + L+ P + ++ Sbjct: 273 EEMAAKIPVKMTIPLVLFIFPTL--LMVLLGPAIIQIM 308 >gi|296444390|ref|ZP_06886355.1| Type II secretion system F domain protein [Methylosinus trichosporium OB3b] gi|296258037|gb|EFH05099.1| Type II secretion system F domain protein [Methylosinus trichosporium OB3b] Length = 329 Score = 76.7 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 64/161 (39%), Gaps = 5/161 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + I KR FP+ALD+++ V +GL + A + + S P+ EF Sbjct: 170 LTNAITKRQQSMRIAFPDALDLMLICVESGLSIEHAFRKVGKEIGVRSVPLAEEFALATA 229 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + L V TV+ + G L AL ++ RD + +A Sbjct: 230 ELSYLPDRRQAFHNLAARTGLDCVKQICTVLIQAEKYGTPLGRALRVTAQESRDMRMAEA 289 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158 + QA ++ K + +I + +V +P + V+ Sbjct: 290 ERQAAALPPKLTVPMIVFFLPVL--MVVVMAPAIIQVMSQS 328 >gi|241763808|ref|ZP_04761854.1| type II secretion system protein [Acidovorax delafieldii 2AN] gi|241366940|gb|EER61345.1| type II secretion system protein [Acidovorax delafieldii 2AN] Length = 406 Score = 76.7 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 24/182 (13%), Positives = 57/182 (31%), Gaps = 10/182 (5%) Query: 3 HLIKKRT---AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIE 57 + K+R K D + ++AG+P+ A ++ ++ V V Sbjct: 52 KIKKRRMRSGKKIKPKDIALFTRQLATMMKAGVPLLQAFDIVGRGNTNASVTKLLNDVRA 111 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G SL+ + + + + G L L L+ + + +K+ Sbjct: 112 DVETGTSLNGAFRKYPM-----YFDSLYCNLVEAGEAAGILEALLDRLALYMEKTEAIKS 166 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 K+++ M + + + + V D L +A + + + Sbjct: 167 KIKSALMYPISVVIVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLFVMALSEIFVKWW 226 Query: 178 VM 179 + Sbjct: 227 WL 228 >gi|254283586|ref|ZP_04958554.1| type IV pilus biogenesis protein PilC [gamma proteobacterium NOR51-B] gi|219679789|gb|EED36138.1| type IV pilus biogenesis protein PilC [gamma proteobacterium NOR51-B] Length = 402 Score = 76.7 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 20/172 (11%), Positives = 52/172 (30%), Gaps = 7/172 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 D + ++AG+P+ + ++ + +R + G L+ + + Sbjct: 64 DIAIFSRQMATMMKAGVPLVQSFDIVSEGVENESMRDLVTTIKNDVAAGGGLANAFEKHP 123 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G L L ++ + +KAK++ A + Sbjct: 124 K-----YFDDLFCSLVAAGENSGTLETMLDRVATYKEKTEQLKAKIKKALTYPIAVVVVA 178 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + V T D G L + ++ + ++I Sbjct: 179 IIVTGILLVKVVPTFAETFRGFGADLPGFTLFVLGI-SEVVQKWWLAILIGI 229 Score = 34.7 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 40/130 (30%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + AG+P+ +A+ G + + + S R + ++ S Sbjct: 272 FSRTLSTTFAAGVPLVEALDSTAGAAGNAIYSNGIR-----RIRDDVTSGTSLYAAIRST 326 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 ++ + G+L E L ++ + + + ME + + + Sbjct: 327 GLFPTLLLQMTSIGEESGSLDEMLGKVADQYEQQVDDAVDNMSALMEPIIMSVLGVLIGG 386 Query: 139 CVSTLVYFTS 148 + + Sbjct: 387 LMIAMYLPIF 396 >gi|309780755|ref|ZP_07675496.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA] gi|308920437|gb|EFP66093.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA] Length = 313 Score = 76.7 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 71/160 (44%), Gaps = 5/160 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + IK+R + FP++LD+I+ V AGL + AV +V + E+ + Sbjct: 149 LAMKIKRRKRDIFEAFPDSLDLIMVCVEAGLGLDSAVLRVVEDMRDARPAMAHEYELLTL 208 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL+ +++ +++VS ++ + G +++E+L S +LR ++ M A Sbjct: 209 ELRAGLAREKALRNFAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRQMLA 268 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + +A + K +I L + V P + ++ Sbjct: 269 EERAAKIGTKVLFPLIFCLFPAL--YVVLLGPAGIQIMAG 306 >gi|307318085|ref|ZP_07597521.1| Type II secretion system F domain protein [Sinorhizobium meliloti AK83] gi|306896126|gb|EFN26876.1| Type II secretion system F domain protein [Sinorhizobium meliloti AK83] Length = 321 Score = 76.7 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 65/158 (41%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +++ I KR +P ALD+++ +V AG+ + A + + S E Sbjct: 164 VRNRITKRQQSIRRSWPEALDLLLITVEAGMGIESAFRKVGEEIGTQSPETAEEILLTTA 223 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + + ++ V T + + G L +AL +++ RD + +A Sbjct: 224 ELSYLQDRRQAFENLGQRTGVEGVRAVVTSLIQAEKYGTPLGQALRVMAQENRDMRMSEA 283 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A ++ K + +I + ++ +P + ++ Sbjct: 284 EKRAAALPPKLTVPMILFFLPVLFAVI--ITPAVIQIM 319 >gi|302542847|ref|ZP_07295189.1| putative integral membrane protein [Streptomyces hygroscopicus ATCC 53653] gi|302460465|gb|EFL23558.1| putative integral membrane protein [Streptomyces himastatinicus ATCC 53653] Length = 297 Score = 76.7 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 58/143 (40%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +++R P+ LD++ V AGL A+ + + P E R + +G+ Sbjct: 139 AVRERKDAIDRTLPDFLDVLAVVVSAGLGFRQALDRVSEKYEGPWADELRITLRQMDMGV 198 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S ++ + + ++V+ F T + +LG + E L ++ +R A+ +A Sbjct: 199 SRRQAFEELRKRNDSEQVAQFVTALQQGEELGAPIVETLIAIANDMRRTDAQNARRRAAR 258 Query: 124 MEAKASAWIIGSLPFCVSTLVYF 146 KA+ I + L+ Sbjct: 259 AVPKATMVITTFMVPGTMVLLVA 281 >gi|120612325|ref|YP_972003.1| type II secretion system protein [Acidovorax citrulli AAC00-1] gi|120590789|gb|ABM34229.1| type II secretion system protein [Acidovorax citrulli AAC00-1] Length = 405 Score = 76.7 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 23/182 (12%), Positives = 56/182 (30%), Gaps = 10/182 (5%) Query: 3 HLIKKRT---AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIE 57 + K+R K D + ++AG+P+ A ++ ++ V + Sbjct: 51 KIKKRRMRSGKKIKPKDIALFTRQMATMMKAGVPLLQAFDIVGRGNTNASVTKLLNDIRA 110 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G SL+ + + + + G L L L+ + + +K+ Sbjct: 111 DVETGTSLNAAFRKYPM-----YFDSLYCNLVEAGEAAGILEALLDRLALYMEKTEAIKS 165 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 K+++ M A + + + V D L + + + + Sbjct: 166 KIRSALMYPTAVIIVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLFVMGVSEIFVQWW 225 Query: 178 VM 179 + Sbjct: 226 WL 227 Score = 35.9 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 16/131 (12%), Positives = 42/131 (32%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ +A+ + G S + V + R+ + G SL+ ++ Sbjct: 275 WTRTLSTMFAAGVPLVEALDSVGGASGNSVYAMATERIQQEVSTGTSLTAAMGNA----- 329 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G++ L + + + + ME ++ + Sbjct: 330 -NVFPSMVIQMCAIGEESGSIDHMLGKAADFYEEEVDEMVAGLSSLMEPIIIVFLGTIIG 388 Query: 138 FCVSTLVYFTS 148 V ++ Sbjct: 389 GIVVSMYLPIF 399 >gi|325958171|ref|YP_004289637.1| type ii secretion system F domain-containing protein [Methanobacterium sp. AL-21] gi|325329603|gb|ADZ08665.1| Type II secretion system F domain protein [Methanobacterium sp. AL-21] Length = 310 Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 76/184 (41%), Gaps = 10/184 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +++R P+ L I +RAG+ + A+ I Q P+ +E +R + +G S Sbjct: 92 MERRVDAIEQTTPDFLRQISSLLRAGVGIETALEDISKQGGGPLNAELKRAVIEIKIGSS 151 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 E++ M + + + +I ++GG+LS+ + ++ LR +K + +A M Sbjct: 152 FDEALLSMGERLKSKTLDRTFRMILEGKRVGGSLSDVIETVAEDLRAVLALKRERRANVM 211 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL----------INDPRGHMLLGVAAAFMLI 174 + I + + + ++ L G++++ +LI Sbjct: 212 MSVMFLIISAIIAAPFALGMIMIYSHFIQSLGKVNPLAEVAYTSAAGYLIIHSIIVGVLI 271 Query: 175 GIMV 178 GI++ Sbjct: 272 GIVL 275 >gi|77163844|ref|YP_342369.1| type II secretion system protein F [Nitrosococcus oceani ATCC 19707] gi|254435335|ref|ZP_05048842.1| Bacterial type II secretion system protein F domain [Nitrosococcus oceani AFC27] gi|76882158|gb|ABA56839.1| type II secretion system protein F [Nitrosococcus oceani ATCC 19707] gi|207088446|gb|EDZ65718.1| Bacterial type II secretion system protein F domain [Nitrosococcus oceani AFC27] Length = 406 Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 24/179 (13%), Positives = 53/179 (29%), Gaps = 7/179 (3%) Query: 2 KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQ 59 K L+ +R K + + + AG+P+ A +I E ++ Sbjct: 54 KSLLGQRKKKITPKEIAIFSRQLATMMAAGVPLVQAFEIIGRGHESISMQEMVLKIKGEV 113 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G +L+E++ + R + + G L L ++ + +K K+ Sbjct: 114 EGGGTLAEALKQHPRQFDP-----LFCNLVHAGEQSGTLETLLDKIAMYKEKTEAIKGKI 168 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + A + + + V D LL + + + Sbjct: 169 KKALFYPTAVVVVAFIITAILLIFVIPQFEALFQNFGADLPALTLLVLKLSALFQEWWW 227 Score = 38.6 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 14/128 (10%), Positives = 44/128 (34%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + AG+P+ +A+ + G + + V ++ I + + ++ R + P Sbjct: 278 RTLSTMFAAGVPLVEAMVSVAGAAGNSVYTQAILRIRDEVSTGTQLQAAMRSSQLFPN-- 335 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + G++ + L+ ++ + + + +E A + + V Sbjct: 336 ---MVVQMVAIGEEAGSIDQMLSKVADFYEEEVDNAVDALSSLLEPLIMAILGVLVGGLV 392 Query: 141 STLVYFTS 148 + Sbjct: 393 IAMYLPIF 400 >gi|296122167|ref|YP_003629945.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] gi|296014507|gb|ADG67746.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] Length = 312 Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 64/158 (40%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + +LI KR P+ LD++V V AGL + + + + ++ + E Sbjct: 150 LAYLISKRKQAIFLQLPDVLDLLVVCVEAGLGLDAGLRRVAEELKDTAPEICGELAMCNL 209 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + + + + + +V ++ + G ++++AL S +R ++ A Sbjct: 210 QLQMGRNRRDMLHDLGVRTGVDDVKALVAIMIQADKFGSSIAQALRVQSDSMRVKRRQIA 269 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A + ++ + + ++ P + ++ Sbjct: 270 EEKAQKTAVQMLFPMVIFIFPGIFVVL--VGPAAIKMM 305 >gi|168702877|ref|ZP_02735154.1| probable secretion system protein TadC [Gemmata obscuriglobus UQM 2246] Length = 319 Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 60/148 (40%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + HL R + P+ALD++V V +GL + A+ + + + EF Sbjct: 157 LYHLRSTRQKEIFLTLPDALDLLVVCVESGLGLDAALRKVTDEMKGHAKTICEEFSLANL 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G E + + + +V + ++ + G ++++AL S +R R+ A Sbjct: 217 QLQMGRPRREVLHDLGVRTGVDDVRSLAAILIQADRFGSSIAQALRVQSDSMRVRRRQIA 276 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A + ++ + + ++ Sbjct: 277 EEKAAKTAVQLIFPLVLFIFPSIFVVLV 304 >gi|118581108|ref|YP_902358.1| type II secretion system protein [Pelobacter propionicus DSM 2379] gi|118503818|gb|ABL00301.1| type II secretion system protein [Pelobacter propionicus DSM 2379] Length = 302 Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 64/158 (40%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + + + R + P+ LD++ SV AGL + A+ +P+ E + Sbjct: 143 LMYKVNNRKTEIFHTLPDILDLLTVSVEAGLGIDAALNRACESPQFKGNPLAEELKIAAR 202 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G +++ M +++V F T++ + G +LS AL S LR ++ A Sbjct: 203 EIRAGKPRGDALRDMAERTDVEDVRAFVTMLVQTERFGTSLSLALRVHSDSLRTKRRQIA 262 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A K +I + + ++ P + ++ Sbjct: 263 EERAAKTAIKILFPLILFIFPAL--MIILIGPAFFKLM 298 >gi|257790323|ref|YP_003180929.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|317489772|ref|ZP_07948271.1| hypothetical protein HMPREF1023_01970 [Eggerthella sp. 1_3_56FAA] gi|325830267|ref|ZP_08163724.1| type II secretion system protein F domain protein [Eggerthella sp. HGA1] gi|257474220|gb|ACV54540.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|316911118|gb|EFV32728.1| hypothetical protein HMPREF1023_01970 [Eggerthella sp. 1_3_56FAA] gi|325487734|gb|EGC90172.1| type II secretion system protein F domain protein [Eggerthella sp. HGA1] Length = 306 Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 4/170 (2%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 AL I SVR+ L + A+ DP+R E RV+ G +L+ + RM R Sbjct: 135 ALPQIAASVRSSLTLERALRTAASHVEDPLREELARVLADTAYGTTLAMAFERMARRTDS 194 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP- 137 +V + + +Q + GG ++ L ++ R +++ + + W + Sbjct: 195 PDVRSLAAAVRIQQRFGGAVAPVLDLIAAHAAARLRTSRELKTELAGTRLAKWFVALAMP 254 Query: 138 -FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +++ T+ + P G ++LGVA G+ + + D Sbjct: 255 AI--FFIMFATNADFSQFYREQPLGWIVLGVAGCSEAFGLFACQRITAMD 302 >gi|163851908|ref|YP_001639951.1| type II secretion system protein [Methylobacterium extorquens PA1] gi|218530659|ref|YP_002421475.1| type II secretion system protein [Methylobacterium chloromethanicum CM4] gi|240139031|ref|YP_002963506.1| hypothetical protein MexAM1_META1p2450 [Methylobacterium extorquens AM1] gi|254561626|ref|YP_003068721.1| hypothetical protein METDI3213 [Methylobacterium extorquens DM4] gi|163663513|gb|ABY30880.1| type II secretion system protein [Methylobacterium extorquens PA1] gi|218522962|gb|ACK83547.1| type II secretion system protein [Methylobacterium chloromethanicum CM4] gi|240009003|gb|ACS40229.1| conserved hypothetical protein; putative membrane protein [Methylobacterium extorquens AM1] gi|254268904|emb|CAX24865.1| conserved hypothetical protein; putative membrane protein [Methylobacterium extorquens DM4] Length = 323 Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 62/159 (38%), Gaps = 4/159 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 + ++ KR A+ +P+ALD+ + V +G+ V +A + S + E + Sbjct: 164 LSNITSKRQAEIRRAWPDALDLCLICVESGMSVENAFRRVSLEVASQSAVLAEELALLTA 223 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + L+ V +T + + G + +AL L++ RD + +A Sbjct: 224 ELSFLPERRVAYENLALRTGLEIVKSLTTALMQAERYGTPVGQALRVLAQESRDYRMTEA 283 Query: 118 KVQALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A S+ K I+ LP L+ + Sbjct: 284 EKKAASLPPKLTVPMILFFLPVLFVVLLTPAGIQVYEAM 322 >gi|148258240|ref|YP_001242825.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1] gi|146410413|gb|ABQ38919.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1] Length = 324 Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 59/148 (39%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + + I KR FP+ALD+++ + +G+ + A + + + + EF Sbjct: 166 LSNAISKRQLSIKRAFPDALDLLLICIESGMSIEAAFRKVSMEIASQSIALSEEFTLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + R L+ V + + G L ++L +++ RD + +A Sbjct: 226 ELSYLQDRKVAYENLARRTGLEGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEA 285 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 286 EKKAAALPPKLTVPMILFFLPVLFVVIL 313 >gi|325964126|ref|YP_004242032.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans Sphe3] gi|323470213|gb|ADX73898.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans Sphe3] Length = 294 Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 58/145 (40%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + K+R + N LD ++ SV AGL A+A P+ E R ++ Sbjct: 136 LYSKGKERQKVIQLELANTLDQMLISVEAGLGFEGAMARAGENGKGPLAEELVRTLQDMQ 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S E+ + + E+ F I G +S L ++++R ++ +A+ + Sbjct: 196 VGRSRREAYLALAERTSIPELRSFVQAIIQADTYGIAISRVLRVQAKVMRMKRRQRAEEK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145 A+ + ++ + + + Sbjct: 256 AMKLPVMILFPLLFFIFPVLFIAIL 280 >gi|307294432|ref|ZP_07574276.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] gi|306880583|gb|EFN11800.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] Length = 322 Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 71/149 (47%), Gaps = 3/149 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + +R + FP+ALD+++ V AGL + A+ + + S V + +V+ Sbjct: 158 ISAKAARRQEAIVHGFPDALDLMLVCVEAGLGLEAAMDRVGRELALSHPLVSAALGKVVL 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S +++ RM + + E+ F+T++ QLG ++ + L + +R+++ M+A Sbjct: 218 ELRAGRSRQDALRRMADDVDVDEIRSFATLLIQSDQLGSSVGQTLRIYAAEMREKRRMRA 277 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF 146 + +A + S ++ + + ++ Sbjct: 278 EEKAHRLPVLLSVPLVACMLPVMIGVLML 306 >gi|256821932|ref|YP_003145895.1| type II secretion system protein [Kangiella koreensis DSM 16069] gi|256795471|gb|ACV26127.1| type II secretion system protein [Kangiella koreensis DSM 16069] Length = 414 Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 22/176 (12%), Positives = 58/176 (32%), Gaps = 8/176 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D L + ++AG+P+ + +I + V+ + G ++S+ Sbjct: 76 DIAVFLRQLAIMMKAGVPLVQSFDIIGKGHENPSVQDLVMDIKTDVESGNPFADSLRNHP 135 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G L + L ++ + +K+K+++ M A + Sbjct: 136 K-----YFDDLVCDLIHAGEQSGTLEQMLDRIATYKEKTEALKSKIKSAMMYPAAVITVS 190 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA--FMLIGIMVMRLMINFDV 187 ++ + V + D + V+ + + + L+I V Sbjct: 191 LAVTAILLIYVVPMFEDLFSNAGADLPALTAMVVSMSENMQANWYIYLGLLIAIVV 246 Score = 35.1 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 41/129 (31%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG+P+ DA+ G + R ++ E GL ++ ++ Sbjct: 286 RTLATTFAAGVPLVDALDSAAGASGNAVYRKAIMKIKEDVTTGLQINLAMISTG------ 339 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + G + LA ++ I + + +E +I G + Sbjct: 340 VFPNMVNQMVAIGEESGAVDTMLAKVADIYEQEVDDAVDGLSSLIEPFVIVFIGGVVGTI 399 Query: 140 VSTLVYFTS 148 + + Sbjct: 400 IVAMYLPIF 408 >gi|148264721|ref|YP_001231427.1| type II secretion system protein [Geobacter uraniireducens Rf4] gi|146398221|gb|ABQ26854.1| type II secretion system protein [Geobacter uraniireducens Rf4] Length = 405 Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 24/179 (13%), Positives = 55/179 (30%), Gaps = 13/179 (7%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISR 71 D + +GLP+ + ++ GQ + +V E+ G + ++++S+ Sbjct: 64 TKDLVVFTRQFATMIDSGLPLVQCLDILAGQQENKTFKDILVKVKESVESGSTFADALSK 123 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + GG L L L+ + +K +V+ + Sbjct: 124 HPKA-----FDQLYVNLVAAGEAGGILDTILNRLAAYIEKAMKLKKQVKGAMVYPATIMS 178 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-------AFMLIGIMVMRLMI 183 I + + V T D + +A ++I + M Sbjct: 179 IAVIVVGVILVFVIPTFAKMFADFGGDLPAPTKIVIALSNFLQRYILVIIAAFFLLKMA 237 Score = 38.6 bits (88), Expect = 0.38, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 38/130 (29%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+P+ D + ++ + + V E + S+SE + Sbjct: 273 FTRTLGTMISSGVPIMDGLEIVAKTAGNKVVEEAIYSVRQ-----SISEGKTIAEPLAAC 327 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G + L ++ D + ME ++ ++ Sbjct: 328 GVFPPMVVQMISVGEATGAMDAMLNKIADFYDDEVDDAVGALTSMMEPLLMVFLGTTVGG 387 Query: 139 CVSTLVYFTS 148 V + Sbjct: 388 LVVAMYLPIF 397 >gi|152980730|ref|YP_001354687.1| PilC type IV pilus assembly protein [Janthinobacterium sp. Marseille] gi|151280807|gb|ABR89217.1| PilC type IV pilus assembly protein [Janthinobacterium sp. Marseille] Length = 410 Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 19/172 (11%), Positives = 52/172 (30%), Gaps = 6/172 (3%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSE 67 D + ++AG+P+ + ++ + V + + G SL++ Sbjct: 66 KKVSEKDITLFTRQLATMMKAGVPLLQSFDIVAKGNDNPSVSKLVQDIRSDVETGTSLNQ 125 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + + + + G L + L L+ +KAK+++ Sbjct: 126 AFRKFPL-----YFDPLFCNLVGAGEQAGILEDLLTRLAIYKEKTLAIKAKIKSAMFYPV 180 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + + + V D L+ +A + ++ + Sbjct: 181 SILAVAFIVTAVIMIWVVPAFKEVFTSFGADLPAPTLMVMAMSDFMVANWYI 232 >gi|254393103|ref|ZP_05008263.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294814750|ref|ZP_06773393.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064] gi|326443129|ref|ZP_08217863.1| putative integral membrane protein [Streptomyces clavuligerus ATCC 27064] gi|197706750|gb|EDY52562.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294327349|gb|EFG08992.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064] Length = 295 Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 56/137 (40%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 P+ LD++ V AGL A+ + + P E R + +G+S ++ + Sbjct: 145 IERTLPDFLDVLAVVVSAGLGFRQALERVAEKYEGPWSDELRITLRQMDMGVSRRDAFDQ 204 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + R ++VS F T + +LG + + L ++ +R A+ +A K++ Sbjct: 205 LRRRNDSEQVSMFVTALQQGEELGAPIVDTLIQIATDMRRTDAQNARREAARAVPKSTLV 264 Query: 132 IIGSLPFCVSTLVYFTS 148 + + L+ + Sbjct: 265 VTLVMLPATMILIVVSF 281 >gi|209886535|ref|YP_002290392.1| type II secretion system protein [Oligotropha carboxidovorans OM5] gi|209874731|gb|ACI94527.1| type II secretion system protein [Oligotropha carboxidovorans OM5] Length = 325 Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 59/148 (39%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +K+ I KR FP+ALD+++ V +G+ + A + + S P+ E Sbjct: 166 LKNAISKRQLSIKRAFPDALDLLLICVESGMSIEAAFRKVSVEIGSQSVPLAEELTLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + L+ V + + G L + L +++ RD + +A Sbjct: 226 ELSYLQDRKMAYENLQKRTGLEGVKSVCMALMQSERYGTPLGQTLRVMAQENRDMRMNEA 285 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A S+ K + +I + ++ Sbjct: 286 EKKAASLPPKLTVPMIVFFLPVLFVVIL 313 >gi|256785513|ref|ZP_05523944.1| integral membrane protein [Streptomyces lividans TK24] Length = 300 Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 60/144 (41%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I+ R P+ LD++ V AGL A+ + + P E R + Sbjct: 139 IWSAIRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVSTRYEGPWADELRITLRQMD 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ E+ + + R ++V+ F T + +LG + + L +L++ +R A+ + Sbjct: 199 LGMGRREAFTELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRK 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144 A KA+ I + L+ Sbjct: 259 AARAVPKATLMITTFMVPATMILL 282 >gi|182436318|ref|YP_001824037.1| putative integral membrane protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776948|ref|ZP_08236213.1| Type II secretion system F domain protein [Streptomyces cf. griseus XylebKG-1] gi|178464834|dbj|BAG19354.1| putative integral membrane protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657281|gb|EGE42127.1| Type II secretion system F domain protein [Streptomyces cf. griseus XylebKG-1] Length = 295 Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 55/132 (41%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I+ R P+ LD++ V AGL A+ + + P E R + Sbjct: 134 IWSAIRVRREHIERTLPDFLDVLAVVVSAGLGFRQALDRVAEKYEGPWSDELRITLRQMD 193 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+S ++ + R ++V+ F T + +LG + E L ++ +R A+ + Sbjct: 194 MGVSRRQAFEELRRRNDSEQVAMFVTTLQQGEELGAPIVETLIQIANDMRRTDAQNARRK 253 Query: 121 ALSMEAKASAWI 132 A KA+ + Sbjct: 254 AARAVPKATFAV 265 >gi|212635449|ref|YP_002311973.1| Tight adherence TadC-like transmembrane protein [Shewanella piezotolerans WP3] gi|212556933|gb|ACJ29387.1| Tight adherence TadC-like transmembrane protein, putative [Shewanella piezotolerans WP3] Length = 321 Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 68/158 (43%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ L K+R FP+ALD++V AGL + A+ + + S + SE V Sbjct: 159 LQSLAKRRMRLLRVGFPDALDLLVVCCEAGLGLMAALQRVAKELAFSHPSLASELELVCS 218 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL++ ++ L+++ ++ IS +LG ++E L S RD++ A Sbjct: 219 KVRAGLTIKVALQEFTERTGLEDIKGLNSAISQSMRLGTGIAETLRVFSDEYRDKRLQAA 278 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + QA + K ++ + + P + V+ Sbjct: 279 EEQAAKLAVKMIFPMMCCIWPS--FFIVAVGPAVLKVM 314 >gi|90020509|ref|YP_526336.1| type IV pilus biogenesis protein PilC [Saccharophagus degradans 2-40] gi|89950109|gb|ABD80124.1| type II secretion system protein [Saccharophagus degradans 2-40] Length = 405 Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 17/165 (10%), Positives = 52/165 (31%), Gaps = 6/165 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 D + ++AG+P+ + ++ S + + R++ + G + S+ + Sbjct: 67 DIALFTRQMATMMKAGVPLVQSFEIVSNGSENKSLAELIRQIKDDVASGSGFAPSLRKHP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G L L ++ + +KAK++ A + Sbjct: 127 K-----YFDELFCNLVESGEQSGALETMLDRIATYKEKTEQLKAKIKKALTYPIAVLVVA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 G + + V + + ++ + + + Sbjct: 182 GIVSMILLIKVVPQFAASFSSFGAELPAFTMMVLGMSDAAQEYWL 226 Score = 36.3 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 14/129 (10%), Positives = 43/129 (33%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG+P+ DA+ + G + + V + +V + G L+ +++ + Sbjct: 277 RTLSTTFAAGVPLIDALQSVAGATGNSVYTVAVEKVRDEVSTGTPLNVALTNTGK----- 331 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 ++ + G L L ++ + + +E + + + Sbjct: 332 -FPALLIQMTAIGEESGALDTMLDKVASYYEEAVDNSVDNLTALLEPLIMSVLGILVGGM 390 Query: 140 VSTLVYFTS 148 + + Sbjct: 391 MIAMYLPIF 399 >gi|156741661|ref|YP_001431790.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] gi|156232989|gb|ABU57772.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] Length = 311 Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 1/143 (0%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ALD++ V AGL A+ + + DP+ EF+RV+ LG +++ M+ Sbjct: 166 LPDALDLLCICVEAGLSFDQAMQRLTEKWEDPLSKEFKRVLSDTRLGRPRRDAMKDMIDR 225 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA-SAWIIG 134 + +V F + QLG ++ L S +R R+ +A+ +A K + Sbjct: 226 CGVDDVQTFIGAVIQAEQLGVSIGRILRIQSDQMRIRRRQRAEEEAHKAPIKMLFPMVFL 285 Query: 135 SLPFCVSTLVYFTSPGYMNVLIN 157 P ++ P M L Sbjct: 286 IFPALFIVILGPAVPRIMKSLGG 308 >gi|21223384|ref|NP_629163.1| integral membrane protein [Streptomyces coelicolor A3(2)] gi|8218173|emb|CAB92604.1| putative integral membrane protein [Streptomyces coelicolor A3(2)] Length = 300 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 61/144 (42%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I+ R P+ LD++ V AGL A+ + + P E R + Sbjct: 139 IWSAIRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVSTRYEGPWADELRITLRQMD 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+S E+ + + R ++V+ F T + +LG + + L +L++ +R A+ + Sbjct: 199 LGMSRREAFTELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRK 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144 A KA+ I + L+ Sbjct: 259 AARAVPKATLMITTFMVPATMILL 282 >gi|300113119|ref|YP_003759694.1| type II secretion system F domain-containing protein [Nitrosococcus watsonii C-113] gi|299539056|gb|ADJ27373.1| Type II secretion system F domain protein [Nitrosococcus watsonii C-113] Length = 406 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 53/179 (29%), Gaps = 7/179 (3%) Query: 2 KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQ 59 + L+ +R K + + + AG+P+ A +I E ++ Sbjct: 54 RPLLGQRKKKITPKEIAIFSRQLATMMAAGVPLVQAFEIIGRGHESASMQEMVLKIKGEV 113 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G +L+E++ + R + + G L L ++ + +K K+ Sbjct: 114 EGGGTLAEALKQHPRQFDP-----LFCNLVHAGEQSGTLETLLDKIAMYKEKTEAIKGKI 168 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + A + + + V D LL + + + Sbjct: 169 KKALFYPTAVVVVAFIITAILLIFVIPQFEALFQNFGADLPALTLLVLKLSALFQEWWW 227 Score = 38.6 bits (88), Expect = 0.42, Method: Composition-based stats. Identities = 14/128 (10%), Positives = 43/128 (33%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + AG+P+ +A+ + G + + V ++ I + + ++ R + P Sbjct: 278 RTLSTMFAAGVPLVEAMVSVAGAAGNSVYTQAILRIRDEVSTGTQLQAAMRSSQLFPN-- 335 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + G++ + L ++ + + + +E A + + V Sbjct: 336 ---MVVQMVAIGEEAGSIDQMLGKVADFYEEEVDNAVDALSSLLEPLIMAILGVLVGGLV 392 Query: 141 STLVYFTS 148 + Sbjct: 393 IAMYLPIF 400 >gi|157961842|ref|YP_001501876.1| type II secretion system protein [Shewanella pealeana ATCC 700345] gi|157846842|gb|ABV87341.1| type II secretion system protein [Shewanella pealeana ATCC 700345] Length = 320 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 69/158 (43%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ L K+R K FP+ALD++V AGL + A+ + + S + SE V Sbjct: 158 LQSLSKRRMRKLRVGFPDALDLLVVCCEAGLGLMAAMQRVARELAFSHPSLASELELVCS 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL++ ++ L+++ ++ IS +LG ++E L S R+++ A Sbjct: 218 KVRAGLTIKVALQEFTERTGLEDIKGLNSAISQSMRLGTGIAETLRVFSDEYRNKRLQAA 277 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + QA + K ++ + + P + V+ Sbjct: 278 EEQAAKLAVKMIFPMMCCIWPS--FFIVAVGPAVLKVM 313 >gi|284028545|ref|YP_003378476.1| type II secretion system protein [Kribbella flavida DSM 17836] gi|283807838|gb|ADB29677.1| type II secretion system protein [Kribbella flavida DSM 17836] Length = 272 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 59/185 (31%), Gaps = 9/185 (4%) Query: 3 HLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 + R A D + + AG P DA+ V +E R Sbjct: 90 QRARARRLHLADQKRAQVIEACDTLAAELAAGRPPHDALEGAAE-----VCAELRPAAAA 144 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 LG + + + + + V + G ++ + L+ LR ++++ + Sbjct: 145 ARLGGDVPAVLQLAADTPGAESLKALAAAWQVADRSGAAVAAIVDRLAASLRAEESLRRQ 204 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + A+ +A ++ LP + L Y + L G L A + G+ Sbjct: 205 IATNLAGARTTARLLAILPLFGTLLGYALGADPLTFLTTTIPGAACLTAGLALAITGLWW 264 Query: 179 MRLMI 183 + Sbjct: 265 TERLA 269 >gi|39936745|ref|NP_949021.1| type II secretion system protein [Rhodopseudomonas palustris CGA009] gi|192292571|ref|YP_001993176.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1] gi|39650601|emb|CAE29124.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] gi|192286320|gb|ACF02701.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1] Length = 324 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 59/148 (39%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 +K+ I+KR FP+ALD+++ + +G+ + A + + + EF Sbjct: 166 LKNAIQKRQLSIKRAFPDALDLLLICIESGMSIETAFRRVSIEIGSQSIPLAEEFTLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + L V + + G L ++L +++ RD + +A Sbjct: 226 ELSYLQDRKQAYENLALRTGLDGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEA 285 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 286 EKKAAALPPKLTVPMIVFFLPVLFVVIL 313 >gi|308274905|emb|CBX31504.1| hypothetical protein N47_E50160 [uncultured Desulfobacterium sp.] Length = 391 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 21/163 (12%), Positives = 58/163 (35%), Gaps = 5/163 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ + + +G+ + DA+ + + ++ E+ G SL +++ Sbjct: 62 LPDITRNLSMLLASGVQLMDALQSLSDEYPGFYGDLLNQIRESVSSGTSLHKALESYGYV 121 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + + + G+L L ++ L + ++KAK+++ ++ A + Sbjct: 122 FP-----EYYINMVQAGETSGSLDMVLVKIADFLETQASIKAKIRSATVYPLLMAGVSTL 176 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + F + + V ++ VA + + Sbjct: 177 ILFFLFSFVMPKIVRIFTETGGSLPFLTVVIVALSNFVSKYWW 219 Score = 41.3 bits (95), Expect = 0.061, Method: Composition-based stats. Identities = 13/130 (10%), Positives = 36/130 (27%), Gaps = 8/130 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + G+P+ A+ + + + S+ + + L Sbjct: 263 FARTMGALLGGGIPLLKALKLSAKSIGNR--------KLENSVLNSVEKVAAGQQMSSSL 314 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + GNL++ L + ++ N K + E + + Sbjct: 315 PGFPPIILRLISTGEKSGNLAQTLNRAAYSYEEQFNRKIERALSLFEPIMILVMGFVVCI 374 Query: 139 CVSTLVYFTS 148 V ++ Sbjct: 375 IVLAVLLPIF 384 >gi|118580924|ref|YP_902174.1| type II secretion system protein [Pelobacter propionicus DSM 2379] gi|118503634|gb|ABL00117.1| type II secretion system protein [Pelobacter propionicus DSM 2379] Length = 405 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 18/180 (10%), Positives = 47/180 (26%), Gaps = 15/180 (8%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + +GLP+ + ++ Q + E ++ S Sbjct: 64 TKELVIFTRQFATMIDSGLPLVQCLEILSSQQENKTFKEILYKVKESVESGS----TFAD 119 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + ++GG L L L+ + +K +++ + I Sbjct: 120 ALAKHPKAFDQLFVNLVAAGEVGGILDTILQRLAAYIEKAMKLKKQIKGAMVYPLTIMSI 179 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA-----------AAFMLIGIMVMRL 181 + + V T D + +A ++ G+ + Sbjct: 180 AVIVVGVILIFVIPTFAKMFQDFGGDLPAPTKIVIALSNFLTRYIIVIIALIYGLFWVFK 239 Score = 40.5 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 11/130 (8%), Positives = 36/130 (27%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + V +G+P+ D + ++ + + + E + + + + Sbjct: 273 FTRTLGTMVSSGVPIMDGLEIVAKTAGNKIVEEAIYGVRQ-AISEGKTMAEPLAA----C 327 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G + L ++ D + ME ++ ++ Sbjct: 328 GVFPPMVVQMIGVGEATGAMDAMLNKIADFYDDEVDDAVSAMTAMMEPLLMVFLGTTVGG 387 Query: 139 CVSTLVYFTS 148 V + Sbjct: 388 LVIAMYLPIF 397 >gi|83950071|ref|ZP_00958804.1| type II/IV secretion system protein, TadC subfamily protein [Roseovarius nubinhibens ISM] gi|83837970|gb|EAP77266.1| type II/IV secretion system protein, TadC subfamily protein [Roseovarius nubinhibens ISM] Length = 323 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 72/145 (49%), Gaps = 4/145 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHLGLSLSESISRM 72 FP++LD+++ V AG + ++ + + S + E++ V + G + ++ M Sbjct: 174 FPDSLDMMLVCVEAGQSMDQSIVRVSEEIRASYPALADEYQLVAQQIKAGRDKASVLNEM 233 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS-AW 131 +Q++S F TV+ G ++ +AL + +RD++ M+A+ +A + K + Sbjct: 234 GDRCGVQDISSFVTVLVQSQTFGTSVGDALRVYAAEMRDKRVMRAEEKANKIPTKMTLCT 293 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLI 156 + ++P + LV + G M+++ Sbjct: 294 MGLTVPPLLIILVGPSVLGIMDLMT 318 >gi|330811788|ref|YP_004356250.1| Type 4 fimbrial assembly protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379896|gb|AEA71246.1| Type 4 fimbrial assembly protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 405 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 19/175 (10%), Positives = 51/175 (29%), Gaps = 8/175 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65 KR + ++AG+P+ A +I +R V + G S Sbjct: 61 KRIKPLDIAL--FTRQMATMLKAGVPLLQAFDIIGEGFDNPNMRKLVDEVKQEVAAGNSF 118 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + ++ + + + + G L L ++ + +KAK++ Sbjct: 119 AAALRKCPQ-----YFDELYCNLVDAGEQAGALDTLLDRVATYKEKSEALKAKIKKAMTY 173 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A + + + V + ++ + + ++ + Sbjct: 174 PAAVVLVAAVVTGILLVKVVPQFESVFSGFGAKLPAFTVMVIGLSEIMQQWWWVM 228 >gi|29829793|ref|NP_824427.1| hypothetical protein SAV_3251 [Streptomyces avermitilis MA-4680] gi|29606902|dbj|BAC70962.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 301 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 60/144 (41%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +++R P+ LD++ V AGL A+ + + P E R + Sbjct: 140 IWQAVRERKDVIDRTLPDFLDVLAVVVSAGLGFRQALDRVAEKYEGPWADELRITLRQMD 199 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+S ++ + + ++V+ F + + +LG ++E L L+ +R A+ + Sbjct: 200 MGVSRRQAFDELRKRNSSEQVAQFVSALQQGEELGSPIAETLIQLATDMRRTDAQNARRR 259 Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144 A KA+ + + L+ Sbjct: 260 AAKTIPKATMVTLVFMLPATMILI 283 >gi|15678998|ref|NP_276115.1| hypothetical protein MTH980 [Methanothermobacter thermautotrophicus str. Delta H] gi|2622079|gb|AAB85476.1| conserved protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 313 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 71/176 (40%), Gaps = 4/176 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++++R P+ L I +RAG+ + A+ + Q P+ E +R + +G Sbjct: 91 MMERRVDAIEQSTPDFLRQIASLLRAGVGLESALEDVSRQGEGPLYDELKRAVIEIKIGR 150 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + E+I M + + + +I + GG+LS+ + ++ LR +K + +A Sbjct: 151 TFDEAILSMSERLKSKNLDRTFRMILEGRRAGGSLSDVIETVAEDLRAVLALKRERKANV 210 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 M + + + + + G+M + + AA G +++ Sbjct: 211 MMSVMFLVVAAIIAAPFALGMIMVYSGFMESVGKPNP----ILGAAKIAASGYIII 262 >gi|256832095|ref|YP_003160822.1| type II secretion system protein [Jonesia denitrificans DSM 20603] gi|256685626|gb|ACV08519.1| type II secretion system protein [Jonesia denitrificans DSM 20603] Length = 284 Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 66/173 (38%), Gaps = 3/173 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + +P+ +D ++ VRAGLP+ +AVA + + + +R EF + + + Sbjct: 106 EVWPDVVDHLISGVRAGLPLPEAVAHLGMRGPEQLREEFAIFGREYRATGRFDDCLITLK 165 Query: 74 RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + V G + L+ L+ LR ++ +++A A + Sbjct: 166 ERLADPTADRVIEALRVTRSVGGTEIGHLLSTLATFLRQDLRVRGELEARQSWTVGGARV 225 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + P+ + ++ P + N G +L+ A + +M + Sbjct: 226 AAAAPWLILAML-AVRPEAASA-FNTTLGGILIISGAGATALAYTIMIRIGRL 276 >gi|329118206|ref|ZP_08246916.1| 3-isopropylmalate dehydrogenase [Neisseria bacilliformis ATCC BAA-1200] gi|327465627|gb|EGF11902.1| 3-isopropylmalate dehydrogenase [Neisseria bacilliformis ATCC BAA-1200] Length = 407 Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 64/185 (34%), Gaps = 8/185 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60 K ++ +D + ++AGLP+ A ++ ++ + V Sbjct: 55 KVKATRKKRITQEDITVFTRQLATMMKAGLPLMQAFEIVARGHANPSMTQLLMSVKSDVE 114 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S+ + ++ + F + + GG L L L+ +++K KV+ Sbjct: 115 QGQSMGSAFAKHPK-----YFDRFYCNLVAAGEAGGVLENLLDKLAVYKEKTQSIKKKVK 169 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMV 178 + A + L + V + + P ++ ++ F+ G +V Sbjct: 170 SALTYPIAIVVVAVVLVIVMMMFVLPAFGKVYKDMGAELPPLTQFMMTMSDFFVSYGWLV 229 Query: 179 MRLMI 183 + +I Sbjct: 230 IIGLI 234 Score = 38.9 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 19/142 (13%), Positives = 43/142 (30%), Gaps = 11/142 (7%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLS 66 R A AG+P+ +A+ + G S + + E + + GLSL+ Sbjct: 269 RKATIAR----WARTTASLFAAGVPLVEALDSVAGASGNILYEEATLNIKSQVNQGLSLT 324 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + ++ + G+L + L + + + + ME Sbjct: 325 SGMQSTGL------FPNMVIQMASIGEESGSLDDMLNKAAEFYEEEVDTAVAQLSSLMEP 378 Query: 127 KASAWIIGSLPFCVSTLVYFTS 148 + G + + + Sbjct: 379 IIMVVLGGIIGTILVAMYLPLF 400 >gi|83749633|ref|ZP_00946616.1| TRANSMEMBRANE TIGHT ADHERENCE TADC-RELATED PROTEIN; tadC1 [Ralstonia solanacearum UW551] gi|207744163|ref|YP_002260555.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609] gi|83723694|gb|EAP70889.1| TRANSMEMBRANE TIGHT ADHERENCE TADC-RELATED PROTEIN; tadC1 [Ralstonia solanacearum UW551] gi|206595567|emb|CAQ62494.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609] Length = 314 Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 72/148 (48%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 ++ I++R + FP++LD+I+ V AGL + AV +V + + E+ + Sbjct: 149 LRLKIRRRQRDIFEAFPDSLDLIMVCVEAGLGLDAAVLRVVEEMRTARPAMAEEYEILTL 208 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL+ +++ + +++VS ++ + G +++E+L S +LR +++M A Sbjct: 209 ELRAGLAREKALRNLAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRHMLA 268 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A + K +I + + ++ Sbjct: 269 EERAAKISTKILFPLIFCIFPSLFVVLL 296 >gi|323700365|ref|ZP_08112277.1| Type II secretion system F domain [Desulfovibrio sp. ND132] gi|323460297|gb|EGB16162.1| Type II secretion system F domain [Desulfovibrio desulfuricans ND132] Length = 318 Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 68/158 (43%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + I +R D+ P+ALD++V V +G+ + AV + + + SEF+ + Sbjct: 154 LSKKINRRKLAVGDELPDALDLLVVCVESGMGLDQAVDRVCQEMKNSGPIISSEFKLLTL 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +++ + + L +++ ++++ G ++ L S +R +++ +A Sbjct: 214 ELRAGKARIDALRSLAERVGLDDLNSLTSLLIQADAFGISVGRTLRVYSDAMRVKRSQRA 273 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A M ++ + + + P + + Sbjct: 274 EEKAAKMPVLLLLPLVAFILPTLFVAI--LGPAVIMSM 309 >gi|226227974|ref|YP_002762080.1| type IV pilus assembly protein PilC [Gemmatimonas aurantiaca T-27] gi|226091165|dbj|BAH39610.1| type IV pilus assembly protein PilC [Gemmatimonas aurantiaca T-27] Length = 398 Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 59/171 (34%), Gaps = 6/171 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 + D + AGLP+ A+ ++ QS + + + R+V+ G ++++++ + Sbjct: 58 MRDIVIFTRQFSTMINAGLPLVQALDILAKQSENKALSAVVRQVVFDVESGNTVADAMRK 117 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + S T + + GG L L L+ + + KV+ + Sbjct: 118 HPKA-----FSDLYTNMVAAGEAGGILDTILNRLAIFMEKNDALVRKVKGAMIYPTVIMC 172 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + G + V + + + + + L M L+ Sbjct: 173 VAGLCVVILLWKVIPVFANMFGSVGMELPLPTQVVIGLSNFLNAYWWMLLL 223 >gi|150398546|ref|YP_001329013.1| type II secretion system protein [Sinorhizobium medicae WSM419] gi|150030061|gb|ABR62178.1| type II secretion system protein [Sinorhizobium medicae WSM419] Length = 327 Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 63/148 (42%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + I KR +P+ALD+++ V +G+ + A+ + + S P+ E Sbjct: 169 IANAISKRQHSIRRAWPDALDLLLICVESGVSMELAMRRVADEIAVQSQPLAEELVLTTA 228 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + R L+EV + + G +++AL L++ RD++ A Sbjct: 229 ELSFLPERRVALENLGRRTGLEEVKSVMQALIQADRYGTPVAQALRVLAQESRDQRMTAA 288 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 289 EKKAAALPPKLTVPMILFFLPVLVAVIL 316 >gi|329935278|ref|ZP_08285244.1| type II secretion system F protein [Streptomyces griseoaurantiacus M045] gi|329305101|gb|EGG48960.1| type II secretion system F protein [Streptomyces griseoaurantiacus M045] Length = 296 Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 59/144 (40%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I+ R P+ LD++ V AGL A+ + + P E R + Sbjct: 135 IWQAIRDRKDVIDRTLPDFLDVLAVVVSAGLGFRQALDRVAERYEGPWADELRITLRQMD 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+S ++ + R ++V+ F + + +LG +++ L L+ +R A+ + Sbjct: 195 MGVSRRQAFDELRRRNTSEQVAQFVSALQQGEELGSPIADTLIQLATDMRRTDAQNARRR 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144 A KA+ + + L+ Sbjct: 255 AAKTIPKATMVTLVFMLPATMILI 278 >gi|297193034|ref|ZP_06910432.1| integral membrane protein [Streptomyces pristinaespiralis ATCC 25486] gi|197719836|gb|EDY63744.1| integral membrane protein [Streptomyces pristinaespiralis ATCC 25486] Length = 278 Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 61/161 (37%), Gaps = 1/161 (0%) Query: 24 VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSF 83 +RAGL + A+ VG + D + RV+ G + E++ R + ++ Sbjct: 114 AGELRAGLQPAQALLFAVGAT-DVLGDAEARVLAAARFGGDVPEALRSAARQPGAEGLAG 172 Query: 84 FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143 + V G L+ L L LR + + ++ A A ++ ++ LP + Sbjct: 173 VAACWRVAVDGGAGLAAGLDRLEASLRAEMDQREELAAQLAGAWSTIVLLALLPVAGLAM 232 Query: 144 VYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + ++VL + P G L + G+ ++ Sbjct: 233 GWALGADPLHVLFHSPAGIACLVIGGLLETAGLCWAGRIVR 273 >gi|220913395|ref|YP_002488704.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] gi|219860273|gb|ACL40615.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] Length = 294 Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 60/145 (41%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R + N LD ++ SV AGL A+A + P+ E R ++ Sbjct: 136 LYSKGQERQKTMQLELANTLDQMLISVEAGLGFEGAMARAGDNGNGPLAEELVRTLQDMQ 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S ES + + + E+ F + G +S L ++++R ++ +A+ + Sbjct: 196 VGRSRRESYTALAARTSIPELRSFVQAVVQADTYGIAISRVLRVQAKVMRVKRRQRAEEK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145 A+ + ++ + + + Sbjct: 256 AMKLPVMILFPLLFFIFPVLFIAIL 280 >gi|39996593|ref|NP_952544.1| type IV pilus biogenesis protein PilC [Geobacter sulfurreducens PCA] gi|39983474|gb|AAR34867.1| type IV pilus biogenesis protein PilC [Geobacter sulfurreducens PCA] gi|298505609|gb|ADI84332.1| type IV pilus biogenesis protein PilC [Geobacter sulfurreducens KN400] Length = 405 Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 21/168 (12%), Positives = 55/168 (32%), Gaps = 6/168 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISR 71 D + +GLP+ + ++ Q + RV E+ G + ++++S+ Sbjct: 64 TKDLVVFTRQFATMIDSGLPLVQCLDILSSQQENKTFKDVLIRVKESVEGGSTFADALSK 123 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + ++GG L L L+ + +K +V+ + Sbjct: 124 HPK-----VFDQLYVNLVAAGEVGGILDTILNRLAAYIEKAMKLKKQVKGAMVYPTTIMA 178 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 I + + V T + G + + ++ +++ Sbjct: 179 IAVIVVGVILIFVIPTFAKMFQEFGGELPGPTKFVINLSNFIVKYILL 226 Score = 40.1 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 13/130 (10%), Positives = 38/130 (29%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+P+ D + ++ + + V E + +SE + Sbjct: 273 FTRTLGTLISSGVPIMDGLEIVAKTAGNKVVEEAVYKVRQA-----ISEGKTMAEPLQEC 327 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G + L+ ++ D + ME ++ ++ Sbjct: 328 GVFPPMVVQMISVGEATGAMDAMLSKIADFYDDEVDEAVSAMTALMEPMLMVFLGTTVGG 387 Query: 139 CVSTLVYFTS 148 V + Sbjct: 388 LVIAMYLPIF 397 >gi|319785603|ref|YP_004145079.1| type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171491|gb|ADV15029.1| Type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 340 Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 55/148 (37%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + + KR +P+ LD+++ V +G+ V A+ + + + EF Sbjct: 169 VNNRATKRKQSIQMAWPDGLDLMLICVESGMSVEAALRKVADEIGAQSVALAEEFILTNA 228 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + L V S + + G ++ AL L+ RD + A Sbjct: 229 ELSYLPERKQAYENLASRTGLDSVKSVSQALVQAERYGTPVAHALRVLAAESRDMRMNAA 288 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 289 EKKAAALPPKLTVPMILFFLPVLFAIIL 316 >gi|296134293|ref|YP_003641540.1| Type II secretion system F domain protein [Thermincola sp. JR] gi|296032871|gb|ADG83639.1| Type II secretion system F domain protein [Thermincola potens JR] Length = 304 Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 67/155 (43%), Gaps = 2/155 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K R + D P+ LD++ SV AGL A+ +V + + E R+++ Sbjct: 149 LKAKSAARQEEIQDTLPDVLDLLTVSVEAGLGFDAAMVKVVEKIKGVLSQECARMLQEVK 208 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G +++ + +++V F + QLG ++ L S +R ++ +A+ + Sbjct: 209 MGKPRRDALKDLGVRTGVEDVQSFVGAVIQADQLGVSIGNVLRVQSEQMRQKRRQRAEQK 268 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A+ K +I + + +V P + VL Sbjct: 269 AMKAPVKMLIPLIIFIFPTIFIVV--LGPAAIQVL 301 >gi|193213109|ref|YP_001999062.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327] gi|193086586|gb|ACF11862.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327] Length = 313 Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 70/158 (44%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 ++ + ++R + + P+ ++++V AG+ + A I + + EF Sbjct: 152 LRFITQRRIERMRNGLPDMIELMVICTEAGMSIDAASTRISREMARSYPDLSQEFYLSSL 211 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +++ M + L+E+ +V+ + G +L+++L S ++R R++ +A Sbjct: 212 EMRAGATRLDALRNMALRVGLEELEDLVSVLIQADKFGTSLADSLRVHSDVMRTRRSQRA 271 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + A + K +I + + L+ P + +L Sbjct: 272 EELANKVPVKMLLPLILFIFPTL--LMVLLGPAIIQLL 307 >gi|148642531|ref|YP_001273044.1| type II secretion system protein F, GspF [Methanobrevibacter smithii ATCC 35061] gi|148551548|gb|ABQ86676.1| type II secretion system protein F, GspF [Methanobrevibacter smithii ATCC 35061] Length = 306 Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 73/183 (39%), Gaps = 1/183 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +KR A+ P+ L + ++ GL +A+ + P+ E RR I +G Sbjct: 87 KQEKRAAEIEKSAPDFLRQLSAMLKVGLSFENAMEDMSKYGEGPLYDETRRAIAEIKVGR 146 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++ M + + +E+ T+I + G +++ + ++S LRD +K + ++ Sbjct: 147 NFDDAWMAMAQRLKSKELERIFTIILGSRKSGSSIANVIFDVSNNLRDMLALKRERKSSV 206 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI-NDPRGHMLLGVAAAFMLIGIMVMRLM 182 M A I + + + +M +++I +++ L+ Sbjct: 207 MMAVMFLIISAVIASPFALGMVSVYSQFMQSFGKQTQLILAAPFAGQIYLVIHSVLVGLI 266 Query: 183 INF 185 ++ Sbjct: 267 VSI 269 >gi|110636326|ref|YP_676534.1| type II secretion system protein [Mesorhizobium sp. BNC1] gi|110287310|gb|ABG65369.1| type II secretion system protein [Chelativorans sp. BNC1] Length = 329 Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 57/148 (38%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + KR +P+ALD+++ V +G+ V A + + S + E Sbjct: 169 ISNQASKRKKSIQLAWPDALDLLLICVESGVSVEQAFRRVADEIGTQSVALAEELVLTTA 228 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + L+ V S + + G +S+AL L+ R+ + A Sbjct: 229 ELSFLQERRQAYENLAARTGLESVKSVSQALIQAERYGTPISQALRVLADESREARMNAA 288 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 289 EKKAAALPPKLTVPMILFFLPVLFAIIL 316 >gi|29831150|ref|NP_825784.1| hypothetical protein SAV_4607 [Streptomyces avermitilis MA-4680] gi|29608264|dbj|BAC72319.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 209 Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 60/162 (37%), Gaps = 1/162 (0%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + VRAG +A+ G S + V+ G + +++ + + Sbjct: 44 LAGEVRAGRQPGEALLHAAGD-SGGLGDAQAAVLAAARFGGDVPGALADAAGQPGAEGLL 102 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 V G L+ L L LR ++ +A+++A A+++A ++ +LP Sbjct: 103 GLGACWRVAVDRGAGLAAGLDRLEAALRAERDQRAELRAQLAGARSTAVMLAALPVLGLL 162 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L ++V+++ G L A G+ ++ Sbjct: 163 LGTALGADPLHVVLHTGAGLACLLAGAVLEGAGLWWALRIVR 204 >gi|59713408|ref|YP_206183.1| bipartite nuclear localization signal containing protein [Vibrio fischeri ES114] gi|59481656|gb|AAW87295.1| bipartite nuclear localization signal containing protein [Vibrio fischeri ES114] Length = 303 Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 59/159 (37%), Gaps = 4/159 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 + K K P LD++ V G+ + +++ + + + + Sbjct: 145 LSSRKKALEEKLSGQLPYLLDLLAMCVHTGMTIESSLSYLAKEMQGFDKDLAHMIARTND 204 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + L ++ + +P E+ F + G ++ E L L+ +R + + + Sbjct: 205 RANIVGLEPALDELYVRVPTNEMRSFVMTLKQSLHYGSSIYEILNTLAADIRSVRLLSLE 264 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + + AK S +I + V L+ PG M ++ Sbjct: 265 EKVGKLAAKMSVPLILFIMIPVVILIAA--PGVMRMMTG 301 >gi|15963899|ref|NP_384252.1| hypothetical protein SMc02822 [Sinorhizobium meliloti 1021] gi|307320431|ref|ZP_07599848.1| Type II secretion system F domain protein [Sinorhizobium meliloti AK83] gi|15073074|emb|CAC41533.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021] gi|306893997|gb|EFN24766.1| Type II secretion system F domain protein [Sinorhizobium meliloti AK83] Length = 327 Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 62/148 (41%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + I KR +P+ALD+++ V +G+ + A+ + + S P+ E Sbjct: 169 IANAISKRQQSIRRAWPDALDLLLICVESGVSMELAMRRVADEIAVQSPPLAEELVLTTA 228 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + L EV + + + G +++AL L++ RD++ A Sbjct: 229 ELSFLPERRIALENLGLRTGLDEVKSVTQALIQADRYGTPVAQALRVLAQESRDQRMTAA 288 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 289 EKKAAALPPKLTVPMILFFLPVLVAVIL 316 >gi|311107628|ref|YP_003980481.1| type II secretion system protein F domain-containing protein 4 [Achromobacter xylosoxidans A8] gi|310762317|gb|ADP17766.1| bacterial type II secretion system protein F domain protein 4 [Achromobacter xylosoxidans A8] Length = 307 Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 77/184 (41%), Gaps = 1/184 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR + + P LD IVR + G + A + +P+ E + Sbjct: 123 LWLRADKRQRRMISQLPAFLDNIVRLLTIGNSMGAAFQTAAAATDEPL-REVVETASSLS 181 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L +++++ R L+E+ + V+S+ + GG + L ++ +RD + ++ Sbjct: 182 RSKELDAALAQVSRLYGLKELYMVAAVVSLAMRFGGRSDQVLERMAAFMRDVAQARNELT 241 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A S E + SAWI+ LP ++ + + L DP+G +L A + G + Sbjct: 242 ASSAEVRLSAWILALLPVGIAGFIIVANNNLFMGLWQDPQGFRMLLTAVCLQVGGCYWLY 301 Query: 181 LMIN 184 M Sbjct: 302 RMAK 305 >gi|260776710|ref|ZP_05885605.1| flp pilus assembly protein TadC [Vibrio coralliilyticus ATCC BAA-450] gi|260607933|gb|EEX34198.1| flp pilus assembly protein TadC [Vibrio coralliilyticus ATCC BAA-450] Length = 314 Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 76/164 (46%), Gaps = 7/164 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + HL+KKR ++ P+ALD++V +GL + A+ + + S E V Sbjct: 154 LGHLVKKRQSRIRGGIPDALDLMVVCTESGLGFNSALRRVADEVAISHPDFADELDTVCV 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + G+ +S++ + ++ L E++ T+++ S++GG+L++ L + RD++N + Sbjct: 214 KINAGVEMSDAFNDLIERTGLIEIAGLVTMLAHASRIGGSLAQTLREYTDDYRDKRNQEV 273 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + A + K ++ + C + P + L G Sbjct: 274 EEIAAKIPTKMIFPLLLFIWPC--FFIVAIGPSML--LFTSTLG 313 >gi|168699471|ref|ZP_02731748.1| probable secretion system protein TadC [Gemmata obscuriglobus UQM 2246] Length = 307 Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 62/159 (38%), Gaps = 3/159 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + I+KR + P+ALDI+V SV G ++ A+ + + +E V Sbjct: 147 LGARIEKRQRLIRNALPDALDIMVLSVEGGSSLNAALMWAADEIRDVHPVLGAELLVVQR 206 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 LGLS+ ++ R + E + + + G ++ +AL + R + A Sbjct: 207 EVQLGLSMGDAFQGFARRCGIPEGRDLAAALIQSEKYGASVGKALRTFADSARQDRQAWA 266 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 + A K ++ + + ++ + M+ L Sbjct: 267 EEVAQKASVKVVFPMLLCIFPAIFIVLLGPAAVQMSQLF 305 >gi|182414900|ref|YP_001819966.1| type II secretion system protein [Opitutus terrae PB90-1] gi|177842114|gb|ACB76366.1| type II secretion system protein [Opitutus terrae PB90-1] Length = 439 Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 63/181 (34%), Gaps = 15/181 (8%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRM 72 + VRAG+P+ + V+ Q S P E + T G SLSE++++ Sbjct: 98 RALALFTRQLATLVRAGMPLVRGLEVLARQESGPRFREIVNDLAATIRAGESLSEALAQH 157 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R ++ + GG L L L+ L +KA++ A + Sbjct: 158 PR-----VFDRLYVSMARAGEAGGVLHVVLERLAAFLEKSARLKARIAAAMTYPV---IV 209 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA-AAFMLIGIM-----VMRLMINFD 186 + V+ L+ F P + + +G L + + GI ++ Sbjct: 210 LALAGGIVAALMVFVVPRFEQIFSGLLKGQPLPTLTRLVLGVSGIFQHHGGWCLALVAIG 269 Query: 187 V 187 V Sbjct: 270 V 270 >gi|167767552|ref|ZP_02439605.1| hypothetical protein CLOSS21_02071 [Clostridium sp. SS2/1] gi|167710844|gb|EDS21423.1| hypothetical protein CLOSS21_02071 [Clostridium sp. SS2/1] gi|291558489|emb|CBL37289.1| Flp pilus assembly protein TadB [butyrate-producing bacterium SSC/2] Length = 252 Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 73/190 (38%), Gaps = 5/190 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-----VRSEFRRVIE 57 H + K +F + I S+ AG + +A+ + E + +I Sbjct: 63 HKGHREKEKLRKEFREMMISIGNSLSAGYSIENALKTAKNDLEMYEEHSLLAKELQLLIN 122 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + M ++ L+E F+ VIS+ + GGNL E N L K Sbjct: 123 KLKMNEPVDNLLFDMAEHVGLEEFYQFAQVISIAKKSGGNLIEITENTIEHLSQAIQTKE 182 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++ + + I+ +P+ + V +PGY ++L G ++ ++ + I + Sbjct: 183 EIHTMIAAKQMEKKIMSVMPYFILLYVRIANPGYFDILYESFAGVLVAVISLLCLWIADI 242 Query: 178 VMRLMINFDV 187 + ++ Sbjct: 243 WAERVTEIEI 252 >gi|322420001|ref|YP_004199224.1| Type II secretion system F domain-containing protein [Geobacter sp. M18] gi|320126388|gb|ADW13948.1| Type II secretion system F domain protein [Geobacter sp. M18] Length = 407 Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 21/171 (12%), Positives = 49/171 (28%), Gaps = 5/171 (2%) Query: 10 AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 K D + +GLP+ + ++ Q + E ++ S Sbjct: 62 KKIETKDLVVFTRQFATMIDSGLPLVQCLDILGSQQENKTFKEILIKVKESVESGS---- 117 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + ++GG L L+ L+ + +K +V+ + Sbjct: 118 TFADALSKHPKAFDQLYVNLVAAGEVGGILDTILSRLAAYIEKAMKLKKQVKGAMVYPIT 177 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 I + + V T + +A + L+ +V+ Sbjct: 178 IMSIAVIVVGVILVFVIPTFAKMFADFGGELPAPTKFVIALSNFLVKYIVV 228 Score = 37.8 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 13/130 (10%), Positives = 39/130 (30%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+P+ D + ++ + + + E ++ S+SE + Sbjct: 275 FTRTLGTMISSGVPIMDGLDIVAKTAGNKIVEE-----AIYNVRQSISEGKTIAEPLAEC 329 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G + L ++ D + ME ++ ++ Sbjct: 330 GVFPPMVVQMISVGEATGAMDAMLNKIADFYDDEVDDAVGALTSMMEPLLMVFLGTTVGG 389 Query: 139 CVSTLVYFTS 148 V + Sbjct: 390 LVVAMYLPIF 399 >gi|28868145|ref|NP_790764.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. tomato str. DC3000] gi|28851382|gb|AAO54459.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. tomato str. DC3000] Length = 405 Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 19/170 (11%), Positives = 53/170 (31%), Gaps = 6/170 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMV 73 D + ++AG+P+ + +I + +P + + G S + ++ R Sbjct: 67 DIAFFSRQMATMMKAGVPLLQSFDIISEGAENPNMRTLVDSLKQEVSAGNSFATALRRKP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G L L ++ + +KAK++ A + Sbjct: 127 E-----YFDELFCNLVDAGEQAGALESLLDRVASYKEKTEKLKAKIKKAMTYPAAVLIVA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + V D L+ + + ++ ++ ++ Sbjct: 182 VIVSGILLIKVVPQFQSIFASFGADLPAFTLMVIGLSDIVQKWWLIIVIA 231 Score = 38.6 bits (88), Expect = 0.47, Method: Composition-based stats. Identities = 14/128 (10%), Positives = 37/128 (28%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + + AG+P+ +A+ + G + + V + +S + Sbjct: 277 RTLATTFAAGVPLVEALDSVAGATGNVVFK-----NAVNRVKQDVSTGMQLNFSMRSTGV 331 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + ++ + G L L ++ + + ME A + + V Sbjct: 332 FPSLAIQMTSIGEESGALDAMLDKVATYYEEEVDNMVDNLTSLMEPMIMAILGVIVGGLV 391 Query: 141 STLVYFTS 148 + Sbjct: 392 IAMYLPIF 399 >gi|119477435|ref|ZP_01617626.1| Type II secretory pathway, component PulF [marine gamma proteobacterium HTCC2143] gi|119449361|gb|EAW30600.1| Type II secretory pathway, component PulF [marine gamma proteobacterium HTCC2143] Length = 405 Score = 75.2 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 25/174 (14%), Positives = 55/174 (31%), Gaps = 8/174 (4%) Query: 8 RTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSL 65 R D + ++AG+P+ + ++ + SE V G S Sbjct: 59 RKQAINPVDVAIFTRQLATMMKAGVPMVQSFDIVAEGLDNHSMSELVTEVKNEVASGTSF 118 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++SIS+ + + + G L L ++ + +KAK++ + Sbjct: 119 AQSISKHPK-----YFDELFCNLVASGEQSGTLETMLDRIATYKEKTEALKAKIKKATTY 173 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A I + + V + ++ LL V+ + + Sbjct: 174 PIAVLVIATIVTGILLVKVIPSFAESFANFGSELPAFTLLVVSL-SEAVQEWWL 226 Score = 37.4 bits (85), Expect = 0.94, Method: Composition-based stats. Identities = 12/137 (8%), Positives = 39/137 (28%), Gaps = 5/137 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 F + + AG+P+ DA+ + G + + + + + ++ Sbjct: 268 FNSIIARFSRTLSTTFAAGVPLVDALDAVSGTAGNIIY-----ANAIKRIRDDVTTGQQL 322 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 V + + G L + L ++ + + +E ++ Sbjct: 323 FVSIRATNLFPNMLLQMVSIGEQSGALDDMLEKVAIHYENEVDNAVDNLTALLEPIIMSF 382 Query: 132 IIGSLPFCVSTLVYFTS 148 + + + + Sbjct: 383 LGVVIGGLMIAMYLPIF 399 >gi|86748902|ref|YP_485398.1| type II secretion system protein [Rhodopseudomonas palustris HaA2] gi|86571930|gb|ABD06487.1| type II secretion system protein [Rhodopseudomonas palustris HaA2] Length = 324 Score = 75.2 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 62/148 (41%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +K+ I KR FP+ALD+++ + +G+ + A + + S P+ EF Sbjct: 166 LKNAITKRQLSIRRAFPDALDLLLICIESGMSIEAAFRKVAVEIGTQSIPLAEEFTLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + + L V + + G LS+++ +++ RD + +A Sbjct: 226 ELSYLPDRKQAYENLAKRTGLDGVKSVCLALQQSERYGTPLSQSIRVMAQENRDMRMNEA 285 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 286 EKKAAALPPKLTVPMILFFLPVLFVVIL 313 >gi|307315796|ref|ZP_07595310.1| Type II secretion system F domain protein [Sinorhizobium meliloti BL225C] gi|306898564|gb|EFN29237.1| Type II secretion system F domain protein [Sinorhizobium meliloti BL225C] Length = 327 Score = 75.2 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 62/148 (41%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + I KR +P+ALD+++ V +G+ + A+ + + S P+ E Sbjct: 169 IANAISKRQQSIRRAWPDALDLLLICVESGVSMELAMRRVADEIAVQSPPLAEELVLTTA 228 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + L EV + + + G +++AL L++ RD++ A Sbjct: 229 ELSFLPERRIALENLGLRTGLDEVKSVTQALIQADRYGTPVAQALRVLAQESRDQRMTAA 288 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 289 EKKAAALPPKLTVPMILFFLPVLVAVIL 316 >gi|119960955|ref|YP_948379.1| type II secretion system protein F [Arthrobacter aurescens TC1] gi|119947814|gb|ABM06725.1| putative bacterial type II secretion system protein F domain [Arthrobacter aurescens TC1] Length = 284 Score = 75.2 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 70/182 (38%), Gaps = 3/182 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +KR +P+ +D + ++RAGL + +A+ + + +R F Sbjct: 93 VRWRARKRRNSLRQLWPDIVDHLRSAIRAGLALPEALIQLGHNGPEELRELFLDFGADYR 152 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKV 119 + + ++ + + + + G +L L LS LRD ++++ Sbjct: 153 AAGNFEAAADKLKERLADPVADRIIEALRMTREVGGSDLGRMLGTLSGFLRDSARTRSEL 212 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +A +A + + P+ V ++ + P M V N G ++L + VM Sbjct: 213 EARQSWTVNAARLAVAAPWIVLVVM-ASRPEAM-VAFNSGMGALVLLGGLLISVFCYSVM 270 Query: 180 RL 181 Sbjct: 271 LR 272 >gi|225024579|ref|ZP_03713771.1| hypothetical protein EIKCOROL_01456 [Eikenella corrodens ATCC 23834] gi|224942730|gb|EEG23939.1| hypothetical protein EIKCOROL_01456 [Eikenella corrodens ATCC 23834] Length = 411 Score = 75.2 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 62/187 (33%), Gaps = 9/187 (4%) Query: 1 MKHLIKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIET 58 + K R + D + ++AGLPV A ++ S+ + V Sbjct: 57 LHKKKKVREKRITQGDITVFTRQLATMMKAGLPVMQAFDIVAKGHSNASMTKLLMEVRND 116 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G S++ + + + F + + GG L L L+ +K K Sbjct: 117 IEQGTSMANAFRKHPK-----YFDDFYCNLVDAGEAGGVLESLLDKLAVYKEKTLAIKKK 171 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGI 176 +++ A + L + V + + + ++G++ + G Sbjct: 172 IKSALTYPIAVVVVAIVLVIIMMMFVLPEFKKVYDGMNAEMPALTQFMMGISDFMVAWGW 231 Query: 177 MVMRLMI 183 MV+ M+ Sbjct: 232 MVIIAMV 238 Score = 40.1 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 47/156 (30%), Gaps = 19/156 (12%) Query: 6 KKRTAKFLDDFPNA------------LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR 53 +KR L P AG+P+ +A+ + G S + + E Sbjct: 255 QKRVDAMLLKLPIFGNIVEKGTIARWARTTATLFTAGVPLVEALDSVGGASGNIIYEEAT 314 Query: 54 R-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112 R + + G SL+ ++S ++ + G+L + L + + Sbjct: 315 RSIRNQVNQGTSLTTAMSS------TDLFPNMVLQMASIGEESGSLDDMLNKAAEFYEEE 368 Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 + + ME + + + + Sbjct: 369 VDTAVATLSSLMEPIIMVVLGSIIGVILVAMYLPLF 404 >gi|207728101|ref|YP_002256495.1| pilus assembly protein tadc [Ralstonia solanacearum MolK2] gi|206591346|emb|CAQ56958.1| pilus assembly protein tadc [Ralstonia solanacearum MolK2] Length = 314 Score = 75.2 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 72/148 (48%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 ++ I++R + FP++LD+I+ V AGL + AV +V + + E+ + Sbjct: 149 LRLKIRRRQRDIFEAFPDSLDLIMVCVEAGLGLDAAVLRVVEEMRTARPAMAEEYEILTL 208 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL+ +++ + +++VS ++ + G +++E+L S +LR +++M A Sbjct: 209 ELRAGLAREKALRNLAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRHMLA 268 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A + K +I + + ++ Sbjct: 269 EERAAKISTKILFPLIFCIFPSLFVVLL 296 >gi|78186665|ref|YP_374708.1| TadC protein [Chlorobium luteolum DSM 273] gi|78166567|gb|ABB23665.1| TadC protein [Chlorobium luteolum DSM 273] Length = 315 Score = 75.2 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 70/158 (44%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + +KR + D P+ +D++V +G+ + A+ I + + + EF Sbjct: 151 LGFITRKRIGRLRDSLPDMIDLMVICTESGMGIDAAITRISKEMAGTNPDLAQEFYLSAL 210 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + E++ + L+++ +V++ + G +L+E+L S ++R R+ +A Sbjct: 211 EIRAGATRIEALRNLALRSRLEDLDDLVSVLAQADRFGTSLAESLRVQSDMMRSRRTQRA 270 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + A + K +I + + ++ P + V+ Sbjct: 271 EELAAKIPVKMLLPLILFIFPTL--MMVLLGPAVIQVM 306 >gi|315121886|ref|YP_004062375.1| pilus component protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495288|gb|ADR51887.1| pilus component protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 319 Score = 75.2 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 60/159 (37%), Gaps = 4/159 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + +L+ KR +P+ALD+++ + +G+ V A+ + + + E Sbjct: 159 ISNLVTKRQDSIRRAWPDALDLLLICIESGIAVDQALRRVAEEVGGQSVALSEELLLTTA 218 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L+ + + + + G ++ ++L L R + M+A Sbjct: 219 ELSFLLNRQVAFENFYNRTQMDCIRNVMQAFIQSDRYGTSIGDSLRVLVAETRSERLMEA 278 Query: 118 KVQALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A ++ K I+ LP + ++ M+ + Sbjct: 279 EKKAAALSPKLTVPMILFFLPVLMLVIIGPAILNIMDTM 317 >gi|149917202|ref|ZP_01905702.1| type II secretion system protein [Plesiocystis pacifica SIR-1] gi|149822118|gb|EDM81511.1| type II secretion system protein [Plesiocystis pacifica SIR-1] Length = 382 Score = 75.2 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 27/174 (15%), Positives = 58/174 (33%), Gaps = 7/174 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRM 72 D V AGLP+ + ++ Q+ +P E ++ G SLSE++ Sbjct: 42 KDLVVFTRTFSTMVDAGLPLVQCLDMLSSQAENPRFGEMLGKIKAEVETGKSLSEAMGLY 101 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + GG L ++ L ++ +V+ + A + Sbjct: 102 PK-----VFDDLFRNLVAAGEAGGILDLIFRRMATYLEKSAKLRRQVKGALVYPVAIIVV 156 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLI-NDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + T V T L G + +A + + G ++ ++ Sbjct: 157 GLLVMVIMMTFVLPTFEDMFKDLGAGSLPGPTRIVLAISHFITGHFLLLTIVGI 210 Score = 38.9 bits (89), Expect = 0.28, Method: Composition-based stats. Identities = 11/130 (8%), Positives = 36/130 (27%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+P+ DA+ ++ S + V + S P Sbjct: 251 FTRTLGTLLASGVPILDAMDIVAKTSGNVVIQNGILYAREKVAEGKDIASPLLETGIFPP 310 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G + + L ++ + + + +E ++ + Sbjct: 311 -----MVVQMIGVGEQTGAMDDMLQKIADFYEEEVDAAVAAMSAMLEPLILVFLGVGVGG 365 Query: 139 CVSTLVYFTS 148 + + Sbjct: 366 MLIAMYLPIF 375 >gi|303233387|ref|ZP_07320056.1| type II secretion system F domain protein [Atopobium vaginae PB189-T1-4] gi|302480516|gb|EFL43607.1| type II secretion system F domain protein [Atopobium vaginae PB189-T1-4] Length = 317 Score = 75.2 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 73/183 (39%), Gaps = 1/183 (0%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 +++ + K + P+ I+ + +G ++ A+A + F++ Sbjct: 127 NYIVHAKRDKVAHEMPDVFRILGMGLSSGQTLTQAIAYVGIHKKGEAGHAFQQASLQLRC 186 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G +++ + + + V F T +++ + G L ++++ ++ K ++ Sbjct: 187 GAGITDVLKGIAAMLHAPGVKFLVTALAISQRTGSPLRNLFRQSAKLVEQQEQFKRLLRV 246 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + + + S ++ SLP + ++ S + L P G L AA + + ++ Sbjct: 247 KTAQVRLSVRVVASLPVVLICILSVLSVDFQKGLTR-PLGVGCLICAAVLNAVALFIITQ 305 Query: 182 MIN 184 ++ Sbjct: 306 LMK 308 >gi|240102254|ref|YP_002958562.1| type II secretion system protein F [Thermococcus gammatolerans EJ3] gi|239909807|gb|ACS32698.1| Bacterial type II secretion system protein F [Thermococcus gammatolerans EJ3] Length = 358 Score = 75.2 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 66/182 (36%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + + ++R A+ P L I + AG+ +++A+ + EF ++ Sbjct: 167 RMVWRRRVAEVEKALPYVLRHIASLLSAGVGIAEALVSVAKADYGVASEEFELIVRDMRA 226 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S E++ R M + VS I + GGNL+E L ++ MK Sbjct: 227 GASFEEALERFEEKMGSENVSRVVKQILRAIKFGGNLAEILYKMAEDFAFEYRMKLVEYV 286 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + A ++ ++ +V + + + A +L ++ L Sbjct: 287 QKVNGIAFIYMFMTIVMPTMFIVAILAGSAFSAQGGGGTLALSPSALAVILLFAFPMLSL 346 Query: 182 MI 183 +I Sbjct: 347 II 348 >gi|289769409|ref|ZP_06528787.1| integral membrane protein [Streptomyces lividans TK24] gi|289699608|gb|EFD67037.1| integral membrane protein [Streptomyces lividans TK24] Length = 291 Score = 75.2 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 60/144 (41%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I+ R P+ LD++ V AGL A+ + + P E R + Sbjct: 130 IWSAIRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVSTRYEGPWADELRITLRQMD 189 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ E+ + + R ++V+ F T + +LG + + L +L++ +R A+ + Sbjct: 190 LGMGRREAFTELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRK 249 Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144 A KA+ I + L+ Sbjct: 250 AARAVPKATLMITTFMVPATMILL 273 >gi|10567797|gb|AAG18588.1|AF297457_3 pilin biogenesis protein PilC [Pseudomonas fluorescens] Length = 383 Score = 75.2 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 19/175 (10%), Positives = 51/175 (29%), Gaps = 8/175 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65 KR + ++AG+P+ A +I +R V + G S Sbjct: 39 KRIKPLDIAL--FTRQMATMLKAGVPLLQAFDIIGEGFDNPNMRKLVDEVKQEVAAGNSF 96 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + ++ + + + + G L L ++ + +KAK++ Sbjct: 97 AAALRKCPQ-----YFDELYCNLVDAGEQAGALDTLLDRVATYKEKSEALKAKIKKAMTY 151 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A + + + V + ++ + + ++ + Sbjct: 152 PAAVVLVAAVVTGILLVKVVPQFESVFSGFGAKLPAFTVMVIGLSEIMQQWWWVM 206 >gi|255020083|ref|ZP_05292154.1| type II secretion system protein [Acidithiobacillus caldus ATCC 51756] gi|254970445|gb|EET27936.1| type II secretion system protein [Acidithiobacillus caldus ATCC 51756] Length = 337 Score = 75.2 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 1/148 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + K+R + L D P LD I V GL ++ A+ + V + P+R+EFR ++ Sbjct: 179 LVEQAKRRQKRILKDLPVYLDFITLMVEGGLNLTGAIQIAVDKGPEGPLRNEFRIILRDL 238 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G+ E R + +QE+ T I + GG+L+ L + R+ + ++A+ Sbjct: 239 RSGMPRVEVFRRFGDRVAMQELRSLVTAIIQAEERGGSLAPVLKAQAEQRREERFLRAEK 298 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFT 147 AL K A +I + V ++ F Sbjct: 299 AALEAPVKLLAPLIMFIFPIVFIVLTFV 326 >gi|319944672|ref|ZP_08018939.1| 3-isopropylmalate dehydrogenase [Lautropia mirabilis ATCC 51599] gi|319742111|gb|EFV94531.1| 3-isopropylmalate dehydrogenase [Lautropia mirabilis ATCC 51599] Length = 415 Score = 75.2 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 24/180 (13%), Positives = 55/180 (30%), Gaps = 11/180 (6%) Query: 1 MKHLIKKRTAKFL-----DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRR 54 + + K+R D + ++AG+P+ A ++ + V F Sbjct: 58 VTRIKKQRYKAARGKIQDKDITLFTRQLATMMKAGVPLLQAFDIVAKGTDNGAVAKLFTD 117 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 + G +LS++ + + + G L + L L+ + Sbjct: 118 IKADVETGTALSQAFRKYPL-----YFDNLFCNLVGAGEQAGILDDLLDRLAMYKEKMEA 172 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 +KAK+++ A + + + V D L +A + + Sbjct: 173 IKAKIKSALFYPTAVMVVAFIVVAVIMLFVVPAFKSVFESFGADLPAPTLFVMALSDYFV 232 Score = 40.9 bits (94), Expect = 0.075, Method: Composition-based stats. Identities = 18/142 (12%), Positives = 46/142 (32%), Gaps = 11/142 (7%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLS 66 R A L + AG+P+ +A+ + G + + V +++ + G SL+ Sbjct: 278 RKATIAR----WLRTLSTMFAAGVPLVEALDSVGGAAGNIVYLQATKKIQQEVSTGTSLT 333 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ ++ + G+L L + + + + + ME Sbjct: 334 VAMNNA------NVFPNMVLQMASIGEESGSLDSMLGKSADVYEREVDDAVESLSSLMEP 387 Query: 127 KASAWIIGSLPFCVSTLVYFTS 148 + + V + Sbjct: 388 LIMVVLGTLIGGLVVAMYLPIF 409 >gi|297566543|ref|YP_003685515.1| Type II secretion system F domain-containing protein [Meiothermus silvanus DSM 9946] gi|296850992|gb|ADH64007.1| Type II secretion system F domain protein [Meiothermus silvanus DSM 9946] Length = 408 Score = 74.8 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 58/169 (34%), Gaps = 8/169 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72 D + + AGLP+ A+A++ Q+ + V G S SE+++R Sbjct: 65 KDLAIFSRQLATMLSAGLPIVQALAILEKQTEKKSFRAIIKDVRTEVEGGASFSEALARH 124 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + GNL L LS L ++ K+++ Sbjct: 125 PKL-----FNRLYMNLVRAGETSGNLDAILDRLSAFLEKDLELRGKIKSALTYPTIVFVF 179 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVM 179 + + + T + + L P L+ V+ GI ++ Sbjct: 180 AIGVTYFLLTGIVPQFANILTSLNAQLPPLTRFLIAVSDFLKSSGIFLL 228 >gi|288939923|ref|YP_003442163.1| Type II secretion system F domain-containing protein [Allochromatium vinosum DSM 180] gi|288895295|gb|ADC61131.1| Type II secretion system F domain protein [Allochromatium vinosum DSM 180] Length = 416 Score = 74.8 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 17/172 (9%), Positives = 53/172 (30%), Gaps = 6/172 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLS 66 R D + + AG+P+ A ++ + ++ + + G ++S Sbjct: 71 RKKITGQDLSIFTRQLATMMSAGVPLVQAFDIVGRGHENPAMQDIILAIKQDIESGTAMS 130 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++++ + + + G L L ++ +++K K++ Sbjct: 131 IAMAKHPLH-----FDDLVCSLVAAGEQAGVLDVLLDKIATYKEKTESIKGKIKKALFYP 185 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 A + + + V + D L+ + + ++ Sbjct: 186 AAVIVVAVIVTVVILLFVIPQFKELFSSFGADLPAFTLMVIGLSDLIREWWW 237 Score = 42.4 bits (98), Expect = 0.028, Method: Composition-based stats. Identities = 17/136 (12%), Positives = 46/136 (33%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRM 72 + AG+P+ +A+ + G + + V + ++ E G SL ++ + Sbjct: 281 AAIARFARTLSTMFAAGVPLVEALQSVSGATGNVVYQDAVMKMREEVATGQSLQLAMRQR 340 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + ++ + G L + L ++ ++ + + +E I Sbjct: 341 NLFPHM------VIQMTAIGEESGALDDMLGKVADFYEEQVDNAVDSLSSLLEPMIMVVI 394 Query: 133 IGSLPFCVSTLVYFTS 148 G + V + Sbjct: 395 GGLVGSLVVAMYLPIF 410 >gi|227872977|ref|ZP_03991276.1| Flp pilus assembly protein TadB family protein [Oribacterium sinus F0268] gi|227841193|gb|EEJ51524.1| Flp pilus assembly protein TadB family protein [Oribacterium sinus F0268] Length = 284 Score = 74.8 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 22/187 (11%), Positives = 74/187 (39%), Gaps = 7/187 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIET 58 +KR + F L+ + ++ +G+ + D++ + + E +I Sbjct: 97 KEKRLKELARQFRGFLESLAVALASGMNMHDSLDSTYKDMVMEFGEDEKITKETAEMILG 156 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L++ + + + + +++ F+ + +V + GGN+ E + + I+ ++ + + Sbjct: 157 LRNNLAIEDMMLSLGKRSANKDIENFAIIFNVSYRAGGNIKEIVRRTADIIGEKMEISEE 216 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 +Q K + +P ++ ++ + + P G + + +A ++ Sbjct: 217 IQTAISSNKIQFTAMMIIPVVLTGMLRGMGSSFNRS-FSTPIGIVAVTIAIGIFAGAYVM 275 Query: 179 MRLMINF 185 + ++ Sbjct: 276 GQRIMQV 282 >gi|294102185|ref|YP_003554043.1| Type II secretion system F domain protein [Aminobacterium colombiense DSM 12261] gi|293617165|gb|ADE57319.1| Type II secretion system F domain protein [Aminobacterium colombiense DSM 12261] Length = 296 Score = 74.8 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 74/155 (47%), Gaps = 2/155 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + K+R + + P+ +D++V SV AGL + A++ + + P+ F R + Sbjct: 138 ITNKGKQRQVEARNQLPDVMDLMVVSVEAGLGLDAAMSRVADRLRGPMGENFARALHEIS 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S + ++ +P++EV F + +LG +SE L + + L+ + +KA+ Sbjct: 198 LGESRQAAFRGIMERLPIEEVRHFIASLIQAEELGVAVSEVLRSQAGTLKRLRRLKAEEH 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A K +I + + ++ P +++++ Sbjct: 258 ARKAPIKILFPMILFIFPSLFVVI--LGPAFLSIM 290 >gi|169831132|ref|YP_001717114.1| type II secretion system protein [Candidatus Desulforudis audaxviator MP104C] gi|169637976|gb|ACA59482.1| type II secretion system protein [Candidatus Desulforudis audaxviator MP104C] Length = 417 Score = 74.8 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72 D + V+AG+P+ + V+ QS + V G +LSE++ Sbjct: 78 RDLAVFCRQLATMVQAGMPLLTCLNVLGQQSDNKTLRLTAASVAMAVEAGNTLSEALRAF 137 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P + + GG L E L L+ L +++AKV++ + Sbjct: 138 PKIFP-----ELFVTMVEAGETGGALEEVLERLATQLEKDADIRAKVKSAMSYPLVILAV 192 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + V T + + LL + + L G Sbjct: 193 ALAAISIILIFVLPTFTEMLTSMNLPLPVPTLLVIGLSDFLRGYW 237 Score = 38.2 bits (87), Expect = 0.49, Method: Composition-based stats. Identities = 11/128 (8%), Positives = 37/128 (28%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + VR+G+P+ ++A++ + + + + + + Sbjct: 288 RTLSSLVRSGVPLLQSLAIV-RRIAGNQIVAEAILSAENSVKEGEGLAKP----LERSRV 342 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 T + + G L L +++ + + +E + + F + Sbjct: 343 FPPMVTRMIAIGEDTGALDNLLDRVAQFYEREVDATVSRLSSILEPLLMVFFGLVVGFIL 402 Query: 141 STLVYFTS 148 + Sbjct: 403 LAVYLPMF 410 >gi|222445971|ref|ZP_03608486.1| hypothetical protein METSMIALI_01619 [Methanobrevibacter smithii DSM 2375] gi|222435536|gb|EEE42701.1| hypothetical protein METSMIALI_01619 [Methanobrevibacter smithii DSM 2375] Length = 306 Score = 74.8 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 73/183 (39%), Gaps = 1/183 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +KR A+ P+ L + ++ GL +A+ + P+ E RR I +G Sbjct: 87 KQEKRAAEIEKSAPDFLRQLSAMLKVGLSFENAMEDMSKYGEGPLYDETRRAIAEIKVGR 146 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++ M + + +E+ T+I + G +++ + ++S LRD +K + ++ Sbjct: 147 NFDDAWMAMAQRLKSKELGRIFTIILGSRKSGSSIANVIFDVSNNLRDMLALKRERKSSV 206 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI-NDPRGHMLLGVAAAFMLIGIMVMRLM 182 M A I + + + +M +++I +++ L+ Sbjct: 207 MMAVMFLIISAVVASPFALGMVSVYSQFMQSFGKQTQLILAAPFAGQIYLVIHSVLVGLI 266 Query: 183 INF 185 I+ Sbjct: 267 ISI 269 >gi|296156494|ref|ZP_06839332.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] gi|295893093|gb|EFG72873.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] Length = 318 Score = 74.8 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 68/148 (45%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 M L++ R K +D P+ALD++ V AGL + A+ + + S ++ EF V+ Sbjct: 150 MTRLVESRQRKLFEDLPDALDLMTVCVEAGLGLDAAMMRVTQEIGVKSHALKDEFDMVLL 209 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G +++ + ++++ + ++ + G ++ ++L + LR ++ ++A Sbjct: 210 ELRAGSGRDKALRNLSLRTGVEDIDTLAAMLIQADRFGTSVGDSLRVYTDNLRTKRRLRA 269 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + A + K ++ + + ++ Sbjct: 270 EELAAEIALKLLFPLMFFIFPTLLAVLV 297 >gi|90425202|ref|YP_533572.1| type II secretion system protein [Rhodopseudomonas palustris BisB18] gi|90107216|gb|ABD89253.1| type II secretion system protein [Rhodopseudomonas palustris BisB18] Length = 324 Score = 74.8 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 58/148 (39%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + + I KR FP+ALD+++ V +G+ + A + + + EF Sbjct: 166 LTNAISKRQLSIKRAFPDALDLLLICVESGMSIETAFRKVAIEIGSQSIPLAEEFTLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + L+ V + + G L ++L +++ RD + +A Sbjct: 226 ELSYLQDRKVAYENLAKRTGLEGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEA 285 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 286 EKKAAALPPKLTVPMILFFLPVLFVVIL 313 >gi|302037432|ref|YP_003797754.1| pilus assembly protein TadC [Candidatus Nitrospira defluvii] gi|300605496|emb|CBK41829.1| Pilus assembly protein TadC [Candidatus Nitrospira defluvii] Length = 318 Score = 74.8 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 68/163 (41%), Gaps = 4/163 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ I+ R L FP+ALD++V V AGL + A+ + + + E R + Sbjct: 154 LQRRIESRQRNILAAFPDALDLMVVCVEAGLSLDVAITRVGQELQLMHRELSEELRALYL 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S +++ + L+EV F ++ + G ++ +AL + LR R++++A Sbjct: 214 ELRTGRSRQQALRNAGLRIQLEEVQSFVALLVQTERFGTSVGQALRAHADGLRTRQDLQA 273 Query: 118 -KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159 ++ A I P + L+ + + L Sbjct: 274 TEMAAKLPVKLLLPLIFFIFPSLLVVLLGPAAIQVIRQLAPTL 316 >gi|221067370|ref|ZP_03543475.1| type II secretion system protein [Comamonas testosteroni KF-1] gi|220712393|gb|EED67761.1| type II secretion system protein [Comamonas testosteroni KF-1] Length = 303 Score = 74.8 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 72/158 (45%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 ++ + +R + ++FP+A D+++ V AG+ + A+ + + S+ + E Sbjct: 137 LRWMAARRKREIFENFPDAADLMLVCVEAGMGLDAALGKVTAEIRIKSEALAQELHWTNL 196 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+ + + E+ F+ +++ + G ++ +++ S LR ++ M+A Sbjct: 197 EMRAGSTREKSLRNLAARTGVDEIHAFTAMLTQADRFGTSIGDSIRVFSDDLRHKRQMRA 256 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + A + K ++ + + ++ P + +L Sbjct: 257 EELAAKIPTKMLLPLVTCIFPAI--VMVVLGPAIIRLL 292 >gi|150377235|ref|YP_001313830.1| type II secretion system protein [Sinorhizobium medicae WSM419] gi|150031782|gb|ABR63897.1| type II secretion system protein [Sinorhizobium medicae WSM419] Length = 321 Score = 74.8 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 64/158 (40%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + I KR +P ALD+++ +V +G+ + A + + S E Sbjct: 164 VSNRITKRQQSIRRSWPEALDLLLITVESGMGIESAFRKVGEEIGTQSPETAEEILLTTA 223 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + + ++ V T + + G L +AL +++ RD + +A Sbjct: 224 ELSYLQDRRQAFENLGQRTGVEGVRAVVTSLIQAEKYGTPLGQALRVMAQENRDMRMSEA 283 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A ++ K + +I + ++ +P + ++ Sbjct: 284 EKKAAALPPKLTVPMILFFLPVLFAVI--ITPAVIQIM 319 >gi|117928945|ref|YP_873496.1| type II secretion system protein [Acidothermus cellulolyticus 11B] gi|117649408|gb|ABK53510.1| type II secretion system protein [Acidothermus cellulolyticus 11B] Length = 286 Score = 74.8 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 72/171 (42%), Gaps = 3/171 (1%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +P+ +D + +VRAGL + +AVA + + D +R FRR + + + + S+ + R Sbjct: 110 WPDVVDNLASAVRAGLALPEAVAQLADRGPDELRPTFRRFADDYRVSGNFAASLDELKRR 169 Query: 76 MPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + + G +L L LS LR+ ++A+++ A + Sbjct: 170 LADPTADRIIESLRMAREVGGTDLGRLLRTLSVFLREDLRIRAELETRQGWTVNGARLAV 229 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 P+ + L P ++ N G ++L V A+ + M + Sbjct: 230 LAPWLLLGL-LSLHPAAVHA-YNSAAGVVILTVGASVSAVAYRAMVRIGRL 278 >gi|144897440|emb|CAM74304.1| Flp pilus assembly protein TadC [Magnetospirillum gryphiswaldense MSR-1] Length = 199 Score = 74.8 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 61/149 (40%), Gaps = 5/149 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSLS 66 FP+ALD++V V AGL V A+ + + + + E Sbjct: 49 QALARGFPDALDLMVICVEAGLSVEAALLKVTDEMANSAPELAEEIGLTAAELAFLGDRR 108 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + L +V ST + + G +++AL LS+ R+ + A+ +A S+ A Sbjct: 109 QAWDNLAERTGLAQVKSLSTALVQSEKYGTPVAQALRVLSQENRETRMAAAEKKAASLPA 168 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 K + +I + ++ P + V+ Sbjct: 169 KLTVPMIVFFLPVLFIVI--AGPAAIQVM 195 >gi|88811822|ref|ZP_01127075.1| type II secretion system protein F [Nitrococcus mobilis Nb-231] gi|88790706|gb|EAR21820.1| type II secretion system protein F [Nitrococcus mobilis Nb-231] Length = 409 Score = 74.8 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 20/174 (11%), Positives = 51/174 (29%), Gaps = 7/174 (4%) Query: 8 RTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSL 65 R K D + + +G+P+ A +I + ++ + E G+ L Sbjct: 63 RKKKITPGDIAVLTRQLSTMLNSGVPLVQAFDIIGRGHENPSMQKLVLSIKEDVEAGIGL 122 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S+++ + + + G L L ++ +++K K++ Sbjct: 123 SDALRKHPL-----YFDELVCNLVAAGEQAGVLDTLLDKIATYKEKTESIKKKIKKALFY 177 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A + + + V D +L + + + Sbjct: 178 PTAVLVVAFIVTAILLIFVVPQFEELFRGFGADLPAFTVLVIQLSDAFQQYWWL 231 Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRM 72 + AG+P+ DA+ + G + + V R + E G L + SR Sbjct: 274 AALARFARTLSTMFAAGVPLVDALESVAGATGNRVYGQAVRAMREEVTAGQPLQWAASRT 333 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G+L LA ++ + + + +E A + Sbjct: 334 ELFPHM------MVQMIAIGEEAGSLDAMLAKVADFYEEEVDNAIDSLSSLLEPLIMAIL 387 Query: 133 IGSLPFCVSTLVYFTS 148 + V + Sbjct: 388 GILVGGLVIAMYLPIF 403 >gi|227875851|ref|ZP_03993977.1| type II secretion system protein [Mobiluncus mulieris ATCC 35243] gi|306819132|ref|ZP_07452846.1| type II secretion system protein [Mobiluncus mulieris ATCC 35239] gi|307700039|ref|ZP_07637088.1| type II secretion system F domain protein [Mobiluncus mulieris FB024-16] gi|227843599|gb|EEJ53782.1| type II secretion system protein [Mobiluncus mulieris ATCC 35243] gi|304648108|gb|EFM45419.1| type II secretion system protein [Mobiluncus mulieris ATCC 35239] gi|307614800|gb|EFN94020.1| type II secretion system F domain protein [Mobiluncus mulieris FB024-16] Length = 305 Score = 74.8 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 26/186 (13%), Positives = 70/186 (37%), Gaps = 3/186 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + K +P+ +D ++ VRAG+ + + + + +++ F + H Sbjct: 113 LNVKRSKIQNARGKAWPHVVDNLISGVRAGMSLGETLTKVATSVPPSLQAPFAHFVLDYH 172 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKV 119 +L S++ + + + + +Q G +L L +L ++R + +A++ Sbjct: 173 ARGNLDGSLAMLKNELADPVADRIIEALRLAAQVGGNDLVALLEDLGSMIRAEERTRAEI 232 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A A + P+ + ++ + + P G ++L A ++ ++M Sbjct: 233 LARQSWTVTGARLAAVAPWLILAML--LAKDQTLEIYATPTGSVILTSGAVVSVVAYLLM 290 Query: 180 RLMINF 185 Sbjct: 291 LRFGRL 296 >gi|269977486|ref|ZP_06184458.1| type II secretion system protein [Mobiluncus mulieris 28-1] gi|269934402|gb|EEZ90964.1| type II secretion system protein [Mobiluncus mulieris 28-1] Length = 305 Score = 74.4 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 26/186 (13%), Positives = 70/186 (37%), Gaps = 3/186 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + K +P+ +D ++ VRAG+ + + + + +++ F + H Sbjct: 113 LNVKRSKIQNARGKAWPHVVDNLISGVRAGMSLGETLTKVATSVPPSLQAPFAHFVLDYH 172 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKV 119 +L S++ + + + + +Q G +L L +L ++R + +A++ Sbjct: 173 ARGNLDGSLAMLKNELADPVADRIIEALRLAAQVGGNDLVALLEDLGSMIRAEERTRAEI 232 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A A + P+ + ++ + + P G ++L A ++ ++M Sbjct: 233 LARQSWTVTGARLAAVAPWLILAML--LAKDQTLEIYATPTGSVILTSGAVVSVVAYLLM 290 Query: 180 RLMINF 185 Sbjct: 291 LRFGRL 296 >gi|332531738|ref|ZP_08407623.1| type IV fimbrial assembly protein PilC [Pseudoalteromonas haloplanktis ANT/505] gi|332038714|gb|EGI75156.1| type IV fimbrial assembly protein PilC [Pseudoalteromonas haloplanktis ANT/505] Length = 408 Score = 74.4 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 20/171 (11%), Positives = 53/171 (30%), Gaps = 6/171 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 D I + AG+P+ ++ +I S++ V + G +LS ++ + Sbjct: 69 KDIALVTRQIATMLTAGVPLIQSIEMIASGSNNKSVSKLMNAIGGDVKAGQTLSSALRKY 128 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R + + G L + ++ + +K+K++ A + Sbjct: 129 SR-----YFDDLYCDLVESGEQSGALDKIFDRVALYKEKSEALKSKIKKAMFYPIAVLVV 183 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + V + L ++ + + + L+ Sbjct: 184 ALIVTSILLIFVVPQFQDIFAGFGAELPAFTLFVISISNFMQAYWWVILIA 234 >gi|315231662|ref|YP_004072098.1| hypothetical protein TERMP_01900 [Thermococcus barophilus MP] gi|315184690|gb|ADT84875.1| hypothetical protein TERMP_01900 [Thermococcus barophilus MP] Length = 353 Score = 74.4 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 68/177 (38%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K R A+ P L + + AG+ +++A+ + + EF +I G S Sbjct: 171 KHRVAEVERAMPYVLRHLASLLSAGVGIAEAILSVANSDYGVISEEFELIIRDMRGGASF 230 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E+++R M + VS + + GGNLS L L+ M+ + Sbjct: 231 EEALTRFEERMASENVSRVVKQMLRAVKFGGNLSGILYKLAEDFSFEYRMRLVEYVQKVN 290 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 A ++ S+ +V + MN + P + + + F + +++ ++ Sbjct: 291 GLAFVYMFISVVMPTMLVVAVLAASIMNKRLIMPIQGLAVVLLFGFPAMAFLMVVMI 347 >gi|84489944|ref|YP_448176.1| hypothetical protein Msp_1152 [Methanosphaera stadtmanae DSM 3091] gi|84373263|gb|ABC57533.1| conserved hypothetical membrane-spanning protein [Methanosphaera stadtmanae DSM 3091] Length = 307 Score = 74.4 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 72/183 (39%), Gaps = 4/183 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + + R + P+ L+ I + GL A+ + S P+ +E ++++ Sbjct: 85 ISYNREHRKENIEEQLPDYLNQIASLLNVGLGFESALEELSKTSKGPLNNEIKQLLIETQ 144 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +ES+ + L + + +I + GGNL+E L ++S L++ +K + + Sbjct: 145 FKKPFNESLMDIANRNDLDNLRYIFQIIIHTRESGGNLAEVLEDISHDLKEIILLKKQRR 204 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A M + I ++ + + ++ + + L G + ++ Sbjct: 205 ASVMMSVMLIIISSTIATPFALGMIGLYSEFIEKIGKNNP----LINTIPLASFGYITIQ 260 Query: 181 LMI 183 ++ Sbjct: 261 SIL 263 >gi|93004899|ref|YP_579336.1| type II secretion system protein [Psychrobacter cryohalolentis K5] gi|92392577|gb|ABE73852.1| type II secretion system protein [Psychrobacter cryohalolentis K5] Length = 407 Score = 74.4 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 17/166 (10%), Positives = 52/166 (31%), Gaps = 6/166 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 D + ++AG+P++ + ++ +P ++ ++ G + + ++ R Sbjct: 68 DIAIFARQLATMMKAGVPLTQSFEIVADSLDNPSMKDLVLQIKADIEAGGTFASALRRHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G L L ++ + +KAK++ A + Sbjct: 128 R-----YFDDLFCSLVDSGEQSGALETMLERVATYKEKSELLKAKIKKAMKYPIAVVVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + V + + + V + + + Sbjct: 183 IIVTIILLVKVVPVFADLFSSFGAELPAFTQMVVGMSEWMQAWWFI 228 >gi|167624197|ref|YP_001674491.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4] gi|167354219|gb|ABZ76832.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4] Length = 320 Score = 74.4 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 68/158 (43%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ L +R + FP+ALD++V AGL + A+ + + S + SE V Sbjct: 158 LQSLANRRMRQLRVGFPDALDLLVVCCEAGLGLMAAMQRVARELAFSHPSLASELDLVCS 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL++ ++ L+++ ++ IS +LG ++E L S RD++ A Sbjct: 218 KVRAGLTIKVALQEFTDRTGLEDIKGLNSAISQSMRLGTGIAETLRVFSDEYRDKRLQAA 277 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + QA + K ++ + + P + V+ Sbjct: 278 EEQAAKLAVKMIFPMMCCIWPS--FFIVAVGPAVLKVM 313 >gi|78357408|ref|YP_388857.1| hypothetical protein Dde_2365 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219813|gb|ABB39162.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 324 Score = 74.4 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 66/159 (41%), Gaps = 4/159 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + ++ R D P+ALD++V V AG+ + A+ + + SS + E ++ Sbjct: 162 VSSKVRTRRRLMEDSLPDALDLLVVCVEAGMGLDQAIGRVARELSLSSPVLGEELSMLVS 221 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + SES+ + + L++V+ T+I G +++ L S +R + +A Sbjct: 222 ELRAGKTRSESLKNLAHRVGLEDVNSLVTLIIQADAFGTSIAHTLRVYSDTMRTTRFQRA 281 Query: 118 KVQALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + A M K + LP ++ M V Sbjct: 282 EEIAAKMPVKLLFPLVFCILPALFVAIMGPAGIRLMQVF 320 >gi|34499282|ref|NP_903497.1| fimbrial assembly transmembrane protein [Chromobacterium violaceum ATCC 12472] gi|34105133|gb|AAQ61489.1| fimbrial assembly transmembrane protein [Chromobacterium violaceum ATCC 12472] Length = 407 Score = 74.4 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 56/182 (30%), Gaps = 11/182 (6%) Query: 4 LIKKRTAKF-----LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIE 57 I++R + F D + +RAG+P+ A + S+ V V Sbjct: 52 KIRRRRSGFGKKITEKDITLFTRQLSTMMRAGVPLLQAFDIAAKGHSNPAVTRMLLEVRA 111 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GLSL+E+ + I + GG L L L+ +K+ Sbjct: 112 DVETGLSLAEAFRKRPL-----YFDKLFCNIIAAGEAGGVLDTLLDKLATYKEKVMAIKS 166 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 K+++ + A + + V + + L + + + Sbjct: 167 KIKSAMIYPSAIVGTAFIITAVIMIYVIPAFKDLFSSFGANLPAPTLFVIWLSDQFVHFW 226 Query: 178 VM 179 + Sbjct: 227 WL 228 Score = 39.7 bits (91), Expect = 0.17, Method: Composition-based stats. Identities = 15/128 (11%), Positives = 40/128 (31%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + AG+P+ +A+ + G + + V +E R + +S S Sbjct: 278 RTLSTLFSAGVPLVEALDSVGGAAGNQVYAEATR-----RIQADVSTGSSLNYSMQRTDL 332 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 ++ + G+L + L ++ + + + +E + + V Sbjct: 333 FPNMVLQMTSIGEESGSLDQMLDKVADFYEEEVDNAVAALSSLLEPAIMVILGILIGGLV 392 Query: 141 STLVYFTS 148 + Sbjct: 393 IAMYMPIF 400 >gi|261349491|ref|ZP_05974908.1| conserved hypothetical membrane-spanning protein [Methanobrevibacter smithii DSM 2374] gi|288861855|gb|EFC94153.1| conserved hypothetical membrane-spanning protein [Methanobrevibacter smithii DSM 2374] Length = 306 Score = 74.4 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 72/183 (39%), Gaps = 1/183 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +KR A+ P+ L + ++ GL +A+ + P+ E RR I +G Sbjct: 87 KQEKRAAEIEKSAPDFLRQLSAMLKVGLSFENAMEDMSKYGEGPLYDETRRAIAEIKVGR 146 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++ + + +E+ T+I + G +++ + ++S LRD +K + ++ Sbjct: 147 NFDDAWMATAQRLKSKELGRIFTIILGSRKSGSSIANVIFDVSNNLRDMLALKRERKSSV 206 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI-NDPRGHMLLGVAAAFMLIGIMVMRLM 182 M A I + + + +M +++I +++ L+ Sbjct: 207 MMAVMFLIISAVIASPFALGMVSVYSQFMQSFGKQTQLILAAPFAGQIYLVIHSVLVGLI 266 Query: 183 INF 185 I+ Sbjct: 267 ISI 269 >gi|254427307|ref|ZP_05041014.1| Bacterial type II secretion system protein F domain [Alcanivorax sp. DG881] gi|196193476|gb|EDX88435.1| Bacterial type II secretion system protein F domain [Alcanivorax sp. DG881] Length = 407 Score = 74.4 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 23/192 (11%), Positives = 58/192 (30%), Gaps = 15/192 (7%) Query: 2 KHLIKKR------TAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFR 53 K + KKR K D + ++AG+P+ A ++ +P ++ Sbjct: 49 KKVAKKREINLGGKKKIKPMDIAIFTRQMATMMKAGVPLVQAFEIVADGLDNPSMKDVVL 108 Query: 54 RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 ++ G + + ++ + + + G L L ++ + Sbjct: 109 KIKADVEGGNNFAGALQKHPLL-----FDDLYCSLVDAGEQSGALETMLDRVALYKEKSE 163 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA--AF 171 +K K++ A + + + V T + + + A Sbjct: 164 ALKQKIKKAMKYPIAVICVAIIVTAILLIKVVPTFKELFDGFGAELPAFTQFVIGLSEAL 223 Query: 172 MLIGIMVMRLMI 183 ++M +I Sbjct: 224 QANFFIIMVSLI 235 Score = 36.3 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 20/138 (14%), Positives = 41/138 (29%), Gaps = 7/138 (5%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESIS 70 F + + AG+P+ DA+ G + + V R +V E G L ++ Sbjct: 270 FKSTIARYARTLSTTFAAGVPLIDALDACAGATGNVVYRKAVLQVKEDVSTGQQLQFAMR 329 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + ++ + G L L ++ D + ME A Sbjct: 330 STG------VFPSMALQMTAIGEESGALDAMLEKVAIYYEDEVDNAVDGLTSMMEPLIMA 383 Query: 131 WIIGSLPFCVSTLVYFTS 148 + + + + Sbjct: 384 VLGVLIGGLIIAMYLPIF 401 >gi|294668186|ref|ZP_06733293.1| bacterial type II secretion system protein F domain protein [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309894|gb|EFE51137.1| bacterial type II secretion system protein F domain protein [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 352 Score = 74.4 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 27/188 (14%), Positives = 63/188 (33%), Gaps = 8/188 (4%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHL 61 ++ +D + ++AGLP+ A ++ + + V Sbjct: 1 MKATRKKRITQEDITVFTRQLATMMKAGLPLMQAFEIVARGHVNPSMTQLLMAVRSDVEQ 60 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S+ + ++ + F + + GG L L L+ +++K KV++ Sbjct: 61 GSSMGAAFAKHPK-----YFDKFYCNLISAGEAGGVLEHLLDKLAVYKEKTQSIKKKVKS 115 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVM 179 A + L + V + + P +++ + F+ G +V+ Sbjct: 116 ALTYPIAIIVVAIVLVMVMMMYVLPAFGKVYADMGAELPPLTQIMMTASNFFVSYGWLVI 175 Query: 180 RLMINFDV 187 +I V Sbjct: 176 IGLIAMTV 183 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 18/141 (12%), Positives = 41/141 (29%), Gaps = 9/141 (6%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R A AG+P+ +A+ + G +S + E V + LS Sbjct: 214 RKATIAR----WARTTASLFAAGVPLVEALDSVAG-ASGNILYEEATVSIKSQVNQGLSL 268 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + + ++ + G+L + L + + + + ME Sbjct: 269 TSGMQSTGL----FPNMVIQMASIGEEAGSLDDMLNKAAEFYEEEVDNSVAQLSSLMEPV 324 Query: 128 ASAWIIGSLPFCVSTLVYFTS 148 + G + + + Sbjct: 325 IMVVLGGIIGVILVAMYLPLF 345 >gi|323137430|ref|ZP_08072508.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242] gi|322397417|gb|EFX99940.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242] Length = 323 Score = 74.4 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 66/158 (41%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + I R FP+ALD+++ V +G+ + A + + S P+ EF Sbjct: 164 ISNTITNRQTSMRRAFPDALDLMLICVESGMSIEHAFRKVGSEIGVQSIPLAEEFALATA 223 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + L+ V STV+ + G L +AL ++ RD + M+A Sbjct: 224 ELSYLPDRRTAYLNLAARTGLESVKQISTVLIQAEKYGTPLGQALRITAQESRDMRMMEA 283 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A ++ K + +I + +V SP + V+ Sbjct: 284 EKKAAALPPKLTVPMIVFFLPVL--MVVVLSPAAIQVM 319 >gi|254173151|ref|ZP_04879824.1| Bacterial type II secretion system protein F domain [Thermococcus sp. AM4] gi|214032560|gb|EEB73389.1| Bacterial type II secretion system protein F domain [Thermococcus sp. AM4] Length = 358 Score = 74.4 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 64/178 (35%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R A+ P L I + AG+ +++A+ + EF ++ G S Sbjct: 171 RRRVAEVEKALPYVLRHIASLLSAGVGIAEALVSVAKADYGVASEEFELIVRDMRAGASF 230 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ R M + VS I + GGNL+E L ++ MK + Sbjct: 231 EEALERFEEKMGSESVSRVVKQILRAIKFGGNLAEILYKMAEDFAFEYRMKLVEYVQKVN 290 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 A ++ ++ +V + + + A +L ++ L+I Sbjct: 291 GIAFIYMFMTIVMPTMFIVAILAGSAFSAQGGGGNLALSPSALAVILLFAFPMLSLII 348 >gi|71064644|ref|YP_263371.1| pilin secretion/fimbrial assembly system protein, PilC [Psychrobacter arcticus 273-4] gi|71037629|gb|AAZ17937.1| pilin secretion/fimbrial assembly system protein, PilC [Psychrobacter arcticus 273-4] Length = 407 Score = 74.4 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 18/166 (10%), Positives = 52/166 (31%), Gaps = 6/166 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 D + ++AG+P++ + ++ +P ++ ++ G + + ++ R Sbjct: 68 DIAIFARQLATMMKAGVPLTQSFEIVADSLDNPSMKDLVLQIKADIEAGGNFASALRRHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G L L ++ + +KAK++ A + Sbjct: 128 R-----YFDDLFCSLVDSGEQSGALETMLERVATYKEKSELLKAKIKKAMKYPIAVVVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + V + + V+ + + M Sbjct: 183 IIVTIILLVKVVPVFADLFGSFGAELPAFTQMVVSMSEWMQAWWFM 228 >gi|242399929|ref|YP_002995354.1| Bacterial type II secretion system protein F domain protein [Thermococcus sibiricus MM 739] gi|242266323|gb|ACS91005.1| Bacterial type II secretion system protein F domain protein [Thermococcus sibiricus MM 739] Length = 353 Score = 74.0 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 74/182 (40%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + R + P L + + AG+ +++A+ + P+ EF +I H Sbjct: 166 LRFAWRGRVVEVEKALPYVLRHMASLLSAGVGIAEAMVSVANADYGPISEEFELMIRDMH 225 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S ++++R M + VS I ++ GGNL++ L L+ MK Sbjct: 226 GGTSFEDALTRFEERMASENVSRVVKQILRATRFGGNLADILYKLAEDFSFEYRMKLVEY 285 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + A ++ ++ +V + M+ + P + + + AF I MV+ Sbjct: 286 IQKVNGIAFVYMFITIIMPTLFVVAILAASMMSRTVVMPPSALAVILLFAFPAISSMVVF 345 Query: 181 LM 182 ++ Sbjct: 346 MI 347 >gi|169838373|ref|ZP_02871561.1| type IV pilus assembly protein [candidate division TM7 single-cell isolate TM7a] Length = 245 Score = 74.0 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 57/171 (33%), Gaps = 9/171 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISR 71 D+ + + AG+P++ ++ + + +PV + V G+SL++++ + Sbjct: 65 QDELSIFTRQLSTMINAGVPLTRSLNSLQEHTENPVFRDTLDSVKGDVESGVSLADALGK 124 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + S + + G L E L L+ ++ K+++ Sbjct: 125 HPK-----VFSDIYVNMVRAGEAAGILDEVLNRLAVQQEKSATIRKKIKSAMTYPVVLVV 179 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG---VAAAFMLIGIMVM 179 I F + V + L L+ + + +I + Sbjct: 180 ISVLAFFGLMIFVIPKIGQIIIDLGGPDAELPLITKIMLGISNFIISFWYI 230 >gi|227823976|ref|YP_002827949.1| components of type IV pilus TadC [Sinorhizobium fredii NGR234] gi|227342978|gb|ACP27196.1| components of type IV pilus TadC [Sinorhizobium fredii NGR234] Length = 327 Score = 74.0 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 61/148 (41%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + I KR +P+ALD+++ V +G+ + A+ + + S + E Sbjct: 169 IANAISKRQHSIRRAWPDALDLLLICVESGVSMELAMRRVADEIAAQSSALAEELVLTTA 228 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + L+EV + + G +++AL L++ RD++ A Sbjct: 229 ELSFLPDRRIALENLGLRSGLEEVKAVMQALIQADRYGTPIAQALRVLAQESRDQRMTAA 288 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 289 EKKAAALPPKLTVPMILFFLPVLVAVIL 316 >gi|327539548|gb|EGF26158.1| Flp pilus assembly protein TadC [Rhodopirellula baltica WH47] Length = 311 Score = 74.0 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 60/148 (40%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +K ++K P+ LD++V + AGL + +++ + + E V Sbjct: 150 LKRAVRKYHQMLRAALPDFLDLMVVCLDAGLSLQESIKQVGEELRWIHPAFTHEIDLVQH 209 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 LG + ++I R + S++I + G N+SE+L+ + +LR ++ A Sbjct: 210 DIDLGSPVDKAIRRFADRSGYDALRTLSSLIREGQRFGTNVSESLSGHADMLRFQREQAA 269 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + A K + + + ++ Sbjct: 270 EENAQKASVKIILPTMLFIFPAIFIVLV 297 >gi|325266599|ref|ZP_08133276.1| type IV pilin biogenesis protein PilC [Kingella denitrificans ATCC 33394] gi|324982042|gb|EGC17677.1| type IV pilin biogenesis protein PilC [Kingella denitrificans ATCC 33394] Length = 427 Score = 74.0 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 64/187 (34%), Gaps = 9/187 (4%) Query: 1 MKHLIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIET 58 + + R K + ++AGLP+ A ++ S+ V + Sbjct: 71 LNKMKSAREKKITQQDITVFTRQLSTMMKAGLPLMQAFDIVAKGHSNAAVTRLLTEIRND 130 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G SL S S+ + F + + GG L L L+ + +K K Sbjct: 131 VEQGESLGTSFSKHPK-----YFDKFYCNLVAAGEAGGVLEGLLDKLALYKEKTQAIKKK 185 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGI 176 V++ A + L + V + + + P ++ ++ AF+ G Sbjct: 186 VKSALTYPIAIVVVAVVLVIVMMMFVLPEFGKVYSSMGAELPPLTQFMMNISNAFVAYGW 245 Query: 177 MVMRLMI 183 +++ +I Sbjct: 246 LIILGLI 252 >gi|296122064|ref|YP_003629842.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] gi|296014404|gb|ADG67643.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] Length = 426 Score = 74.0 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 63/160 (39%), Gaps = 3/160 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR--RVIET 58 +++ + R + P+ LD++ V G+ V ++ I + + + ++I Sbjct: 234 VRNKARDRRNEIEKAMPDLLDMLNMCVSQGMTVPASLERIRVEMKGAYPALEQELKIINE 293 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 Q S+ ++ + + + EV F++++ S++G ++S AL + +R+ +A+ Sbjct: 294 QSRIGSMDVALKNFSQRVDVPEVHSFTSLLMQTSRMGTSVSGALTEYAETMRESLKQRAE 353 Query: 119 VQALSM-EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + ++ +P L+ Sbjct: 354 EKGNRATFRLLFPTVLCLMPAVYLFLMGPAIIELSRFFYE 393 >gi|149178503|ref|ZP_01857091.1| type II secretion system protein [Planctomyces maris DSM 8797] gi|148842618|gb|EDL56993.1| type II secretion system protein [Planctomyces maris DSM 8797] Length = 334 Score = 74.0 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 71/156 (45%), Gaps = 4/156 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIET 58 +++ +R + P+ALD+++ + G+P+ A+ + + S P + +I Sbjct: 142 LQNQANRRVHRIQRGLPDALDLVMMCLTGGVPLRTALERVTDEVRFSHPDIAVEFEIIRR 201 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 S+++++ + + + +V+ S +IS +LG N+S AL + + +R + +A+ Sbjct: 202 HADANSMADALKQFAKRIDAPDVNALSLMISQTERLGTNVSTALIDFADGVRRKYRQRAE 261 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + K II + + + F P + + Sbjct: 262 ENSSKTSIKLLFPIIFCMAPPI--YILFFGPAVLEL 295 >gi|116671481|ref|YP_832414.1| type II secretion system protein [Arthrobacter sp. FB24] gi|116611590|gb|ABK04314.1| type II secretion system protein [Arthrobacter sp. FB24] Length = 294 Score = 74.0 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 55/138 (39%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + N LD ++ SV AGL A+A P+ E R ++ +G S E Sbjct: 143 RQKAMQLELANTLDQMLISVEAGLGFEGAMARAGENGKGPLAEEIIRTLQDMQVGRSRRE 202 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 S + + E+ F I G +S L ++++R ++ +A+ +A+ + Sbjct: 203 SYLALAERTNIPELRSFVQAIVQADTYGIAISRVLRIQAKVMRVKRRQRAEEKAMKLPVM 262 Query: 128 ASAWIIGSLPFCVSTLVY 145 ++ + + + Sbjct: 263 ILFPLLFFIFPVLFIAIL 280 >gi|315446284|ref|YP_004079163.1| Flp pilus assembly protein TadB [Mycobacterium sp. Spyr1] gi|315264587|gb|ADU01329.1| Flp pilus assembly protein TadB [Mycobacterium sp. Spyr1] Length = 261 Score = 74.0 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 1/170 (0%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 +ALD++V +R G A+ V ++ + V LG + + R Sbjct: 87 ALQDALDVLVGELRVGAHPVAAITVAGHEARGRIAESLNAVAARALLGADVPAGLRAEGR 146 Query: 75 YMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 P + + G ++ + R + +R+ + +V++ A+A+A I+ Sbjct: 147 RSPSPGHWDRLAVCWQLAQTHGLAIAALMRAAQRDITERERFRGRVESGMAGARATAVIL 206 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 LP L + + L++ G LL V F+ G++ + Sbjct: 207 AGLPVLGVLLGHAIGAEPLAFLLSGGAGGWLLLVGTVFVCAGLLWSDRIT 256 >gi|157283960|ref|YP_001468228.1| type II secretion system protein [Kineococcus radiotolerans SRS30216] gi|151363102|gb|ABS06104.1| type II secretion system protein [Kineococcus radiotolerans SRS30216] Length = 348 Score = 74.0 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 19/184 (10%), Positives = 69/184 (37%), Gaps = 2/184 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 + R + L+ + ++ + ++ G + +A+ ++ + +++ Sbjct: 91 RSQARQIRKLEALASWVESLRDTISTGQALPEALPASALTAAPEIAEPLANLLDRMRARQ 150 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 SL +++ + + E +++ G L+ L +L+ R + ++ +++A Sbjct: 151 SLDQALLLLADDLDDPEADSVIGALAMNARVQGKRLNVVLTSLAESARKQLTIRREIEAG 210 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + + + + Y+ + G ++L + G+ +R + Sbjct: 211 RASMRRGVTFVIITTCTLVIGMTVFNRDYVEP-YSTVTGQIVLAIVIGLFTAGLFWLRRL 269 Query: 183 INFD 186 +F+ Sbjct: 270 ADFE 273 >gi|54309665|ref|YP_130685.1| Flp pilus assembly protein TadC [Photobacterium profundum SS9] gi|46914103|emb|CAG20883.1| hypothetical Flp pilus assembly protein TadC [Photobacterium profundum SS9] Length = 283 Score = 74.0 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 62/156 (39%), Gaps = 4/156 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI--ET 58 + K K P LD++ V+ G+ + A+ + + R + Sbjct: 124 LSMRKKALILKTSRQLPYMLDMMSVCVQTGMTIEAALTYLSTELEAFDRDLCFHIKKTAD 183 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L +++ + +P +V F+ + Q G +++ L+ L+ +R + + + Sbjct: 184 SARVKGLEKALIELSERIPTPDVRSFTLTLIQNLQYGTSIANVLSALAEDMRKMQVLTME 243 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + AK S +I + F + L+ +PG M + Sbjct: 244 EKIGKLAAKMSVPLILLIMFPIVILI--LAPGMMQM 277 >gi|149174204|ref|ZP_01852832.1| type IV fimbrial assembly protein PilC [Planctomyces maris DSM 8797] gi|148847184|gb|EDL61519.1| type IV fimbrial assembly protein PilC [Planctomyces maris DSM 8797] Length = 420 Score = 74.0 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 59/165 (35%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + AGLP+ ++ ++ P+++ VIE G +LSE++++ Sbjct: 81 KQLCTFTRQLSTLQDAGLPILRSLRILEAQAKPGPLKASLDGVIEDIESGNTLSEAMAKQ 140 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + GG L L L+ +++K KVQ + A + Sbjct: 141 PKC-----FDNLYVNMVKAGEAGGALEVILQRLAEFKERAQSLKKKVQGAMIYPVAVITV 195 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 G + + + + G LL ++ + +++ Sbjct: 196 AGLIVGFIMYWIIPKFKKIFLDFGTELPGITLLLMSISDIVVSYF 240 Score = 34.7 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 14/128 (10%), Positives = 35/128 (27%), Gaps = 5/128 (3%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + +G+P+ +A+ + + + V I + R Sbjct: 290 CRTLGTLIASGVPILEAIIIARDTAGNMVFQRAFDTIYAAIREGETMAVPLKEARI---- 345 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 V + + G L L ++ + + + +E + + F Sbjct: 346 -VDDIVVNMVDVGEETGALDNMLYKVADVYDEEVAVLVDALVSLLEPLMVIVLGLIVGFI 404 Query: 140 VSTLVYFT 147 V L Sbjct: 405 VIALFMPL 412 >gi|115525754|ref|YP_782665.1| type II secretion system protein [Rhodopseudomonas palustris BisA53] gi|115519701|gb|ABJ07685.1| type II secretion system protein [Rhodopseudomonas palustris BisA53] Length = 324 Score = 74.0 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 60/148 (40%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + I KR FP+ALD+++ V +G+ + A + + S P+ EF Sbjct: 166 LTNAISKRQLSIKRAFPDALDLLLICVESGMSIEVAFRKVSVEIGTQSIPLAEEFTLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + L+ V + + G L ++L +++ RD + +A Sbjct: 226 ELSYLQDRKVAYENLAKRTGLEGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEA 285 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 286 EKKAAALPPKLTVPMILFFLPVLFVVIL 313 >gi|330872527|gb|EGH06676.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 405 Score = 74.0 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 19/172 (11%), Positives = 54/172 (31%), Gaps = 7/172 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73 D + ++AG+P+ + +I + +P + + G S + ++ + Sbjct: 67 DIAFFSRQMATMMKAGVPLLQSFDIISEGAENPNMRALVNSLKQEVSAGNSFATALRQKP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G L L ++ + +KAK++ A + Sbjct: 127 E-----YFDDLFCNLVDAGEQAGALESLLDRVASYKEKTEKLKAKIKKAMTYPAAVVVVA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + V + G L+ + ++ + +++ F Sbjct: 182 VIVSGILLIKVVPQFQSVFAGFGAELPGFTLMVIGL-SEVVQKWWLAIVVAF 232 Score = 39.7 bits (91), Expect = 0.17, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 41/129 (31%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG+P+ +A+ + G + + V +V + G+ L+ S+ Sbjct: 277 RTLATTFAAGVPLVEALDSVAGATGNVVFRNAVNKVKQDVSTGMQLNFSMRATG------ 330 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + ++ + G L L ++ D + ME + + Sbjct: 331 VFPSLAIQMTAIGEESGALDNMLDKVATYYEDEVDNMVDSLTSLMEPMIMGVLGVIVGGL 390 Query: 140 VSTLVYFTS 148 V + Sbjct: 391 VIAMYLPIF 399 >gi|86739493|ref|YP_479893.1| type II secretion system protein [Frankia sp. CcI3] gi|86566355|gb|ABD10164.1| type II secretion system protein [Frankia sp. CcI3] Length = 296 Score = 74.0 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 70/173 (40%), Gaps = 3/173 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + +P+ +D + +VRAG+ + + +A + + +R F R E S S + R+ Sbjct: 107 ELWPDVVDNLSSAVRAGMSLPEGLAAVGVRGPVQLRPAFTRFGEDYSATGSFSACLDRLA 166 Query: 74 RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G +L L LS LR+ +A+++ +A + Sbjct: 167 DELADPVADRIIESLRMAREVGGTDLGRLLRTLSTFLREDARTRAELETRQSWTVNAARL 226 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + P+ V L+ + P G ++L V A + ++M+ + Sbjct: 227 ALAAPWIVLLLLATRGQNVRA--YDSPTGVLVLVVGGAVSALAYLLMKRIGRL 277 >gi|83647943|ref|YP_436378.1| type II secretory pathway subunit PulF [Hahella chejuensis KCTC 2396] gi|83635986|gb|ABC31953.1| Type II secretory pathway, component PulF [Hahella chejuensis KCTC 2396] Length = 406 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 58/181 (32%), Gaps = 9/181 (4%) Query: 7 KRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLS 64 KRT K D + ++AG+P+ + ++ ++ + G S Sbjct: 59 KRTKKITPFDIAVFTRQMATMMKAGVPLVQSFDIVADGLEHPSLKELVLDIKNEVAAGNS 118 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + + + + G L LA ++ L + +K KV+ Sbjct: 119 FAGALKKHPK-----YFDDLFCNLIDSGEKSGALETMLARVATYLEKTEILKKKVKKAMT 173 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLM 182 A + + + V D M++ ++ +++ ++ Sbjct: 174 YPIAVLVVAVIVTGILLVKVVPQFQDLFQGFGADLPAFTQMIINISEYLQASWYIILGVI 233 Query: 183 I 183 I Sbjct: 234 I 234 Score = 39.3 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 16/131 (12%), Positives = 41/131 (31%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 ++ + AG+P+ DA+ + G + + R ++ + G L S+ Sbjct: 276 FARVLSTTFAAGVPLVDALESVAGATGNAVFRKAVIKIRDDVSSGTQLQYSMKTTG---- 331 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++ + G L + L ++ + ME A + + Sbjct: 332 --VFPVMAIQLTSIGEESGALDDMLEKVADHYEAEVDDAVDNLTALMEPMIMAVLGVLVG 389 Query: 138 FCVSTLVYFTS 148 + + Sbjct: 390 GLIIGMYLPIF 400 >gi|254381954|ref|ZP_04997317.1| integral membrane protein [Streptomyces sp. Mg1] gi|194340862|gb|EDX21828.1| integral membrane protein [Streptomyces sp. Mg1] Length = 297 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 59/145 (40%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I+ R P+ LD++ V AGL A+ + + P E R ++ Sbjct: 135 LWSAIRIRRDHIERTLPDFLDVLAVVVSAGLGFRPALERVADKYEGPWSDEIRITLQQMT 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+S ++ + R ++V+ F T + +LG + E L L+ +R A+ + Sbjct: 195 MGVSRRQAFDELRRRNDSEQVAQFVTALQQGEELGSPIVETLIALAEDMRRTDAQNARRR 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145 A KA+ + + L+ Sbjct: 255 AARAVPKATFAVTTFMLPGTLILLV 279 >gi|32471258|ref|NP_864251.1| integral membrane protein [Rhodopirellula baltica SH 1] gi|32396960|emb|CAD71930.1| probable integral membrane protein [Rhodopirellula baltica SH 1] Length = 313 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 60/148 (40%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +K ++K P+ LD++V + AGL + +++ + + E V Sbjct: 152 LKRAVRKYHQMLRAALPDFLDLMVVCLDAGLSLQESIKQVGEELRWIHPAFTHEIDLVQH 211 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 LG + ++I R + S++I + G N+SE+L+ + +LR ++ A Sbjct: 212 DIDLGSPVDKAIRRFADRSGYDALRTLSSLIREGQRFGTNVSESLSGHADMLRFQREQAA 271 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + A K + + + ++ Sbjct: 272 EENAQKASVKIILPTMLFIFPAIFIVLV 299 >gi|197335643|ref|YP_002155274.1| bipartite nuclear localization signal containing protein [Vibrio fischeri MJ11] gi|197317133|gb|ACH66580.1| bipartite nuclear localization signal containing protein [Vibrio fischeri MJ11] Length = 290 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 70/159 (44%), Gaps = 4/159 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV--IET 58 ++ IK R + P LD++ V+ G+ V +++ + + + + + + Sbjct: 133 LQAKIKARIHRVSTQMPYLLDLMAVCVQTGMTVEASLSYLAKEMKGFNKDLTQVLTKMNE 192 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + L +S+ M +P E+ F ++ G ++ L L+ +R+ + ++ + Sbjct: 193 RSRMVGLEKSLEEMYVEIPSNEMRSFVMTLTQSMHYGSSIYSVLTTLASDIREVQMLELE 252 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + + AK S +I + + L+ PG M +++N Sbjct: 253 ERIGKLAAKMSVPLIVFIMIPIVILIAA--PGVMRLMLN 289 >gi|302536567|ref|ZP_07288909.1| integral membrane protein [Streptomyces sp. C] gi|302445462|gb|EFL17278.1| integral membrane protein [Streptomyces sp. C] Length = 292 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 60/145 (41%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I+ R P+ LD++ V AGL A+ + G+ P E R ++ Sbjct: 130 LWSAIRIRRDNIERTLPDFLDVLAVVVSAGLGFRQALERVAGKYEGPWADEIRITLQQMD 189 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+S ++ + R ++V+ F T + +LG + E L ++ +R A+ + Sbjct: 190 MGVSRRQAFDELRRRNDSEQVAQFVTALQQGEELGSPIVETLIAIAEDMRRTDAQNARRR 249 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145 A KA+ + + L+ Sbjct: 250 AARAVPKATFAVTMFMLPGTLILLV 274 >gi|260439393|ref|ZP_05793209.1| conserved hypothetical protein [Butyrivibrio crossotus DSM 2876] gi|292808189|gb|EFF67394.1| conserved hypothetical protein [Butyrivibrio crossotus DSM 2876] Length = 261 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 84/191 (43%), Gaps = 7/191 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRVI 56 +++K R + F + + + S+ AG + ++ + Q D F++++ Sbjct: 72 YIVKCREKQI-ASFKDGIRFVNNSMHAGYSIENSFKEALIQMEQVYGKDDDTYKGFKKIV 130 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 L + + ++ + +E+ F+ ++ + GGN+S + N + I+ ++ ++K Sbjct: 131 GRIMLNIPIEQAFYQYAVESGTEEILDFAEILKFAKRSGGNMSHIINNTANIITEKISLK 190 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 ++ + K I+ ++P + + +S G + L + G +++ V +I + Sbjct: 191 QEISTVIAGKKFEQMILSAVPAGIILYMRVSSFGTIEKLYGNMFGIIVMSVCLFIYIISV 250 Query: 177 MVMRLMINFDV 187 ++ + + + Sbjct: 251 IIASRISSIKI 261 >gi|319786265|ref|YP_004145740.1| type II secretion system F domain [Pseudoxanthomonas suwonensis 11-1] gi|317464777|gb|ADV26509.1| Type II secretion system F domain [Pseudoxanthomonas suwonensis 11-1] Length = 419 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 24/168 (14%), Positives = 56/168 (33%), Gaps = 6/168 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + +++G+P+ A+ +I G + +R+ + G SL E+ISR Sbjct: 80 KDIAFFSRQMATMMKSGVPIVGALEIIAGGHKNPRMRNMIDTIRTDIEGGSSLYEAISRH 139 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L ++ + +++K K++ + + Sbjct: 140 PVQ-----FDELYRNLVRAGESAGVLETVLDTIATYKENIESLKGKIKKALFYPAMTIAV 194 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + V D + VAA+ ++ + Sbjct: 195 AIIVSAILLIFVIPQFEEVFQGFGADLPAFTKMIVAASNFMVSYWWIM 242 Score = 38.6 bits (88), Expect = 0.43, Method: Composition-based stats. Identities = 15/137 (10%), Positives = 43/137 (31%), Gaps = 7/137 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISR 71 + RAG+P+ +A+ + G + + V R+ + +G ++ ++ + Sbjct: 283 NSAIARFARTTAVTFRAGVPLVEALESVAGATGNSVYEKAVLRIRDDVAVGYPMNLAMKQ 342 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + ++ + G L L ++ N + +E Sbjct: 343 TNLFPHM------VIQMAAIGEEAGALDTMLQKVAEYYEQEVNNAVDALSSLIEPLIMVI 396 Query: 132 IIGSLPFCVSTLVYFTS 148 + + V + Sbjct: 397 LGVLVGGMVIGMYLPIF 413 >gi|194335919|ref|YP_002017713.1| type II secretion system protein [Pelodictyon phaeoclathratiforme BU-1] gi|194308396|gb|ACF43096.1| type II secretion system protein [Pelodictyon phaeoclathratiforme BU-1] Length = 316 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 67/164 (40%), Gaps = 4/164 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 ++ + + R + + P+ LD++V +G+ + A+A I + + + EF Sbjct: 152 LRFITQNRIERMRNSLPDMLDLMVVCTESGMGIDAAIARISREMVRTNPDLAEEFYLSTL 211 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +++ + L ++ +V+ + G +L ++L S ++R + +A Sbjct: 212 EMRAGANRIDALRNLALRSRLDDLQNLVSVLVQADRFGTSLVDSLRVHSDMMRTCRTQRA 271 Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 + A + K + ++ P + L+ + + P Sbjct: 272 EELAAKIPVKMTLPLVLFIFPVLMLVLLGPAIIQVIQIFSQKPL 315 >gi|114800177|ref|YP_759874.1| putative Flp pilus assembly protein TadC [Hyphomonas neptunium ATCC 15444] gi|114740351|gb|ABI78476.1| putative Flp pilus assembly protein TadC [Hyphomonas neptunium ATCC 15444] Length = 310 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 67/160 (41%), Gaps = 5/160 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + I +R FP+ +D++V V AGL + +V + + + R + Sbjct: 151 LDMRISQRKQACSSGFPDMMDLMVACVEAGLSLDASVQRVGEELELRHPIIAGHMRTLSL 210 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S + + + E +T++ ++G +L + L S +R R+ + A Sbjct: 211 ELRAGKSRKMAWRAFAERLGIDEAGSLATMLRQAEEMGTSLGQTLRVFSADMRQRRILMA 270 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + +A+++ AK + +I + + ++ P + ++ Sbjct: 271 EEKAMALPAKMTLPLIIFVFPVLLGVLIL--PAVVMLMTT 308 >gi|320101695|ref|YP_004177286.1| type II secretion system F domain-containing protein [Isosphaera pallida ATCC 43644] gi|319748977|gb|ADV60737.1| Type II secretion system F domain protein [Isosphaera pallida ATCC 43644] Length = 318 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 59/148 (39%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + +L +R + P+ALD++V V AGL + A I + + EF Sbjct: 157 LGYLKSRRQEQIFLTLPDALDLMVVCVEAGLGLDAAFNRIASELQTAAPVLCEEFAIANF 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G E + + + ++ + V+ + G +++ AL S +R ++ A Sbjct: 217 QIRMGRPRREVLRDLGVRTGVADLRALAAVLIQAERFGSSIASALRVQSDSMRIKRRQIA 276 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A K ++ + + ++ Sbjct: 277 EEKAAKTAVKLLFPLVLFIFPGIFVVLV 304 >gi|218710398|ref|YP_002418019.1| Flp pilus assembly protein TadC [Vibrio splendidus LGP32] gi|218323417|emb|CAV19594.1| Flp pilus assembly protein TadC [Vibrio splendidus LGP32] Length = 323 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 71/155 (45%), Gaps = 5/155 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + L K+R K + P+ALD++V +GL + A+ + + + E V Sbjct: 158 LSKLQKERQKKIRNGVPDALDLLVVCTESGLGFNAALGRVASELYVSQPELADELETVFA 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+++ +++ + + L E+ +++S S++GG+L++ L + + RD++ A Sbjct: 218 KIQAGVTMPDALRQFIDRTGLVELEGLVSLLSHASRMGGSLAQTLRDYTVDFRDKRQQAA 277 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 + A + K ++ + C + PG + Sbjct: 278 EEIAAKIPTKMLFPMLLFIWPC--FFIVALGPGII 310 >gi|308234326|ref|ZP_07665063.1| Type II secretion system F domain protein [Atopobium vaginae DSM 15829] Length = 314 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 78/182 (42%), Gaps = 1/182 (0%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L + + D P+ ++ ++ AG S A+A + F++ G Sbjct: 128 RLEQLQKTTLCHDMPDIFRMLGMALAAGQTFSQAIAYVGQHQPGEAGKAFQKASLKLRCG 187 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S+SE ++ M + V F T + + + G L ++++ ++ K + Sbjct: 188 SSISEVLNDMAHTLQAPGVKFLITALFISQRTGAPLKSLFRQSAQLVEQQEKFKKLLSVK 247 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + +A+ S ++ SLP + +++ S + + P G + LG+AA I +M++R + Sbjct: 248 TAQARLSIRVVSSLPLVLISVLSCISLDFQKGITR-PAGLISLGIAAFLDFIALMIIRSL 306 Query: 183 IN 184 + Sbjct: 307 LK 308 >gi|192359121|ref|YP_001983190.1| type IV pilus biogenesis protein PilC [Cellvibrio japonicus Ueda107] gi|190685286|gb|ACE82964.1| type IV pilus biogenesis protein PilC [Cellvibrio japonicus Ueda107] Length = 428 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 19/170 (11%), Positives = 49/170 (28%), Gaps = 6/170 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72 D + ++AG+P+ A ++ +P + + G + S+ + Sbjct: 89 ADIAVFSRQMATMMKAGVPLVQAFDIVADGLENPNMKSLVLEIRDDVAAGGGFAASLRKH 148 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R + + G L L ++ + +KAK++ A + Sbjct: 149 PR-----YFDDLFCNLVDAGEQSGALETMLDRIATYKEKTEALKAKIKKAMTYPIAVIVV 203 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + V D L + + + + ++ Sbjct: 204 AIVVTGILLVKVVPQFAATFASFGADLPAFTLFVLHLSDLAQQWWFLGMI 253 Score = 37.8 bits (86), Expect = 0.80, Method: Composition-based stats. Identities = 15/133 (11%), Positives = 38/133 (28%), Gaps = 5/133 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + + AG+P+ DA+ + G + + + S+ + + R Sbjct: 295 MARFARTLSTTFAAGVPLIDALTSVAGAAGNRIYSDAILKVREDVSTGIQLNAALRSGNL 354 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P +S + G L E L ++ + +E + + Sbjct: 355 FP-----TLLVQMSAIGEESGALDEMLDKVAIYYEGEVDNMVDNLTSLLEPMIISVLGIL 409 Query: 136 LPFCVSTLVYFTS 148 + + + Sbjct: 410 VGGLMVAMYLPIF 422 >gi|315127772|ref|YP_004069775.1| type IV pilus biogenesis protein C [Pseudoalteromonas sp. SM9913] gi|315016286|gb|ADT69624.1| type IV pilus biogenesis protein C [Pseudoalteromonas sp. SM9913] Length = 409 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 55/171 (32%), Gaps = 6/171 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D I + AG+P+ ++ +I G ++ V + + GL LS + + Sbjct: 70 KDIALVTRQIATMLMAGVPLIQSIEMIGSGSTNKSVSKLMSAIGDEVKAGLPLSNVLRKY 129 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R + + G L + ++ + +K+K++ + + Sbjct: 130 PR-----YFDELYCDLVASGEQSGALDKIFDRVALYKEKSEALKSKIKKAMFYPISVLVV 184 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 G + + V N + L +A + + M ++ Sbjct: 185 AGIVTSILLIFVVPQFQEIFNGFGAELPAFTLFVIAISEFMQSYWWMIVLA 235 Score = 34.7 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 40/129 (31%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG+P+ DA+ G S + V + G ++ ++ + Sbjct: 281 RTLSTTFAAGVPLVDALDSAAGASGNAVYRYAILEIKAEVSSGNQMNWAMRN------SK 334 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + G+L LA ++ I + + +E A + + Sbjct: 335 IFPDMVVQMVAIGEESGSLDGMLAKVATIYEQEVDDAVDGLSSLLEPLIMAVLGVLVGGL 394 Query: 140 VSTLVYFTS 148 + + Sbjct: 395 IVAMYLPIF 403 >gi|253700257|ref|YP_003021446.1| type II secretion system protein [Geobacter sp. M21] gi|251775107|gb|ACT17688.1| type II secretion system protein [Geobacter sp. M21] Length = 406 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 61/178 (34%), Gaps = 9/178 (5%) Query: 10 AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSE 67 K D + +GLP+ + ++ GQ + E +V E+ G + ++ Sbjct: 61 KKIETKDLVVFTRQFATMIDSGLPLVQCLDILSGQQENKTFKEILVKVKESVESGSTFAD 120 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +++R + + ++GG L LA L+ + +K +V+ + Sbjct: 121 ALARHPKA-----FDQLYVNLVAAGEVGGILDTILARLAAYIEKAMKLKKQVKGAMVYPI 175 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 I + + V T + + +A + L +V+ +I Sbjct: 176 TIMSIAVIVVGVILVFVIPTFAKMFADFGGELPMPTKIVIAMSDFLTKYLVV--IIAI 231 Score = 38.2 bits (87), Expect = 0.49, Method: Composition-based stats. Identities = 11/130 (8%), Positives = 34/130 (26%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+P+ D + ++ + + + E + P Sbjct: 274 FTRTLGTMISSGVPIMDGLEIVAKTAGNKIVEEAIYKVRQSISEGKTIAEPLAESGVFPP 333 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G + L ++ D + ME ++ ++ Sbjct: 334 -----MVVQMISVGEATGAMDAMLNKIADFYDDEVDDAVGAMTSMMEPLLMVFLGTTVGG 388 Query: 139 CVSTLVYFTS 148 V + Sbjct: 389 LVIAMYLPIF 398 >gi|289626922|ref|ZP_06459876.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330867360|gb|EGH02069.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 405 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 18/165 (10%), Positives = 51/165 (30%), Gaps = 6/165 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMV 73 D + ++AG+P+ + +I + +P + + G S + ++ R Sbjct: 67 DIAFFSRQMATMMKAGVPLLQSFDIISEGAENPNMRSLVESLKQEVSAGNSFATALRRKP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G L L ++ + +KAK++ A + Sbjct: 127 E-----YFDELFCNLVDAGEQAGALESLLDRVASYKEKTEKLKAKIKKAMTYPAAVLIVA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + V + + L+ + + ++ + Sbjct: 182 IIVSGILLIKVVPQFQSIFSSFGAELPAFTLMVIGLSDIVQKWWL 226 Score = 38.6 bits (88), Expect = 0.42, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 43/129 (33%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG+P+ +A+ + G + + V ++V + G+ L+ S+ Sbjct: 277 RTLSTTFAAGVPLVEALDSVAGATGNVVFKNAVQKVKQDVSTGMQLNFSMRSTG------ 330 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + ++ + G L L ++ D + ME A + + Sbjct: 331 VFPTLAIQMTAIGEESGALDTMLDKVATYYEDEVDNMVDNLTSLMEPMIMAVLGVIVGGL 390 Query: 140 VSTLVYFTS 148 V + Sbjct: 391 VIAMYLPIF 399 >gi|86147189|ref|ZP_01065505.1| bipartite nuclear localization signal containing protein, TadC-like protein [Vibrio sp. MED222] gi|85835073|gb|EAQ53215.1| bipartite nuclear localization signal containing protein, TadC-like protein [Vibrio sp. MED222] Length = 301 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 67/159 (42%), Gaps = 4/159 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR--VIET 58 + + K R + P +D++ V+ G+ + ++ + + + V Sbjct: 144 LSSMAKNRQRRISRQMPYLIDLMAICVQTGMTIEASMKYLSIEMKSFDKELSSLLEVTNQ 203 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + + ++ + R +P EV F ++ Q G ++ L L+ +R+ + ++ + Sbjct: 204 RARLVGMENALEELYRKVPSPEVRSFVMTLTQSIQHGSSIYNVLTTLAGDIREVQMLELE 263 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + + AK S +I + + ++ PG M +++N Sbjct: 264 EEIGKLAAKMSIPLIVFILIPIVFVIAA--PGVMRMMLN 300 >gi|253687073|ref|YP_003016263.1| type II secretion system protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753651|gb|ACT11727.1| type II secretion system protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 319 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +K R K P+ALD++V AGLP+ + V+ + SS + E Sbjct: 159 LKWRAASRGEKLARAVPDALDLMVVCAEAGLPIGRVLQVVSKELGLSSPEMADELHYTAA 218 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + ++ + + E+ + + G LS+AL ++ R + Sbjct: 219 ELQILSDRTLAMKHLAERTRVSEIESMVATLIQAERYGTPLSQALRTIADESRKTLILSL 278 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + +A + A+ S ++ + + ++ Sbjct: 279 EEKAGKLPAQLSVPLMALILPPIIAIM 305 >gi|218708112|ref|YP_002415733.1| putative bacterial type II secretion system protein [Vibrio splendidus LGP32] gi|218321131|emb|CAV17081.1| putative bacterial type II secretion system protein, TadC-like protein [Vibrio splendidus LGP32] Length = 301 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 67/159 (42%), Gaps = 4/159 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR--VIET 58 + + K R + P +D++ V+ G+ + ++ + + + V Sbjct: 144 LSSMAKNRQRRISRQMPYLIDLMAICVQTGMTIEASMKYLSIEMKSFDKELSSLLEVTNQ 203 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + + ++ + R +P EV F ++ Q G ++ L L+ +R+ + ++ + Sbjct: 204 RARLVGMENALEELYRKVPSPEVRSFVMTLTQSIQHGSSIYNVLTTLAGDIREVQMLELE 263 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + + AK S +I + + ++ PG M +++N Sbjct: 264 EEIGKLAAKMSIPLIVFILIPIVFVIAA--PGVMRMMLN 300 >gi|145221977|ref|YP_001132655.1| type II secretion system protein [Mycobacterium gilvum PYR-GCK] gi|145214463|gb|ABP43867.1| type II secretion system protein [Mycobacterium gilvum PYR-GCK] Length = 261 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 64/171 (37%), Gaps = 1/171 (0%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 +ALD++V +R G A+ V ++ + V LG + + Sbjct: 86 AALQDALDVLVGELRVGAHPVAAITVAGHEARGRIAESLNAVAARALLGADVPAGLRAEG 145 Query: 74 RYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R P + + G ++ + R + +R+ + +V++ A+A+A I Sbjct: 146 RRSPSPGHWDRLAVCWQLAQTHGLAIAALMRAAQRDITERERFRGRVESGMAGARATAVI 205 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + LP L + + L++ G LL V F+ G++ + Sbjct: 206 LAGLPVLGVLLGHAIGAEPLAFLLSGGAGGWLLLVGTVFVCAGLLWSDRIT 256 >gi|322369440|ref|ZP_08044005.1| type II secretion system protein [Haladaptatus paucihalophilus DX253] gi|320551172|gb|EFW92821.1| type II secretion system protein [Haladaptatus paucihalophilus DX253] Length = 699 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 16/155 (10%), Positives = 54/155 (34%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ ++R P+ LD + AG+ V ++V + + E R+ Sbjct: 465 VQWAYRRRVKAIEAAVPDMLDRLASLNEAGMTVVESVRRVTNSDLGALNDELERMSRDIE 524 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + ++ R+ + V+ ++++ G++ L + ++ + ++ + + Sbjct: 525 WGTDAATALRRVEDRIDTPTVTRVVSLVTNAMHASGDIGRVLRIAADDAQESRRLQRQRE 584 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ + + + + L Sbjct: 585 DEMKTYLIIIYLSFFVFLVIIGALSAILVPALQDL 619 Score = 42.0 bits (97), Expect = 0.035, Method: Composition-based stats. Identities = 22/180 (12%), Positives = 54/180 (30%), Gaps = 3/180 (1%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIET 58 + R K + R+G+ + + + + V Sbjct: 160 SYRGNARARKIDGSLSRTVAFTYALSRSGMGMPAIMRTLARNRDVYGEAAAEVGVGVKAM 219 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 GL + +I +M R P ++ F ++ Q G +L L+ + + + Sbjct: 220 DLFGLDVLTAIKQMSRQSPSEKFEDFGENLASVLQSGQSLPTYLSEQYERYQRDAKAEQE 279 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + A ++ + + + G M V +++ + +G +V Sbjct: 280 AFLELLSVLAEGYVSLFVVGPLLLITILVIMGLMGVADTLDFLYLMAYLLIPLGNVGFVV 339 >gi|328943878|ref|ZP_08241343.1| hypothetical protein HMPREF0091_10568 [Atopobium vaginae DSM 15829] gi|327491847|gb|EGF23621.1| hypothetical protein HMPREF0091_10568 [Atopobium vaginae DSM 15829] Length = 296 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 78/182 (42%), Gaps = 1/182 (0%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L + + D P+ ++ ++ AG S A+A + F++ G Sbjct: 110 RLEQLQKTTLCHDMPDIFRMLGMALAAGQTFSQAIAYVGQHQPGEAGKAFQKASLKLRCG 169 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S+SE ++ M + V F T + + + G L ++++ ++ K + Sbjct: 170 SSISEVLNDMAHTLQAPGVKFLITALFISQRTGAPLKSLFRQSAQLVEQQEKFKKLLSVK 229 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + +A+ S ++ SLP + +++ S + + P G + LG+AA I +M++R + Sbjct: 230 TAQARLSIRVVSSLPLVLISVLSCISLDFQKGITR-PAGLISLGIAAFLDFIALMIIRSL 288 Query: 183 IN 184 + Sbjct: 289 LK 290 >gi|289770834|ref|ZP_06530212.1| integral membrane protein [Streptomyces lividans TK24] gi|289701033|gb|EFD68462.1| integral membrane protein [Streptomyces lividans TK24] Length = 311 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 5/183 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + ++R + + VRAG +A+ S+ + V+ Sbjct: 128 RRAKERRQDAVIA----LCGTLAGEVRAGRQPGEALLCAAQDSAG-LGEAQAAVLAAARF 182 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + +++ + + + V G L+ L L LR ++ ++ ++A Sbjct: 183 GGDVPGALALAAGQPGAEGLRGLAACWRVAVDQGAGLAAGLDRLEGALRAERDQRSDLRA 242 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 A+A+A ++ LP L ++VL++ G L +G+ + Sbjct: 243 QLAGARATAVMLAGLPVLGLLLGVALGSDPLHVLLHTGAGVGCLLAGGVLESLGVWWVTR 302 Query: 182 MIN 184 ++ Sbjct: 303 IVR 305 >gi|283852078|ref|ZP_06369352.1| type II secretion system protein [Desulfovibrio sp. FW1012B] gi|283572468|gb|EFC20454.1| type II secretion system protein [Desulfovibrio sp. FW1012B] Length = 317 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 67/158 (42%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + +KKR P+ALD++V V AG+ + A+ + + + SE R + Sbjct: 154 LDARVKKRQKAIQRGLPDALDLLVVCVEAGMGLDAAIYRVCVEMASKEPVLSSELRLLTL 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S E++ + + L+++ ++ G ++++ L + +R ++ A Sbjct: 214 ELRAGKSRREALKNLSSRIGLEDMGSLVAMLIQTDMFGTSIAQTLRVYADSMRTKRFQLA 273 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + A + K +I + + ++ P ++++ Sbjct: 274 EELAAKLPVKLLFPLIFFIFPTLLIVI--LGPAVISLM 309 >gi|283769336|ref|ZP_06342235.1| type II secretion system F domain protein [Bulleidia extructa W1219] gi|283103993|gb|EFC05377.1| type II secretion system F domain protein [Bulleidia extructa W1219] Length = 313 Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 63/158 (39%), Gaps = 1/158 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + +R P LD++ V AGL A+ + + + EF+ V Sbjct: 156 LASRVTRRQNLLEKQLPGFLDLLSVCVEAGLGFDQAIQYVCHEYKGELSDEFKVVQRDIS 215 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + +++ + + + +++ F+ + ++G +L L SR +R K + + Sbjct: 216 LGSTRKQALMSLCQRVTSSQMTTFTAAVLQADEMGISLKNILNAQSRNVRLAYKNKIEEK 275 Query: 121 ALSMEAKA-SAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 A + K +I P L+ PG M L + Sbjct: 276 AQKLSTKILIPMLIFIFPVIFIILLGPAVPGIMKALGS 313 >gi|257484001|ref|ZP_05638042.1| type II secretion system protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 405 Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 19/180 (10%), Positives = 50/180 (27%), Gaps = 18/180 (10%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMV 73 D + ++AG+P+ + +I + +P + + G S + ++ + Sbjct: 67 DIAFFSRQMATMMKAGVPLLQSFDIISEGAENPNMRTLVGSLKQEVSAGNSFATALRQKP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G L L ++ + +KAK++ A + Sbjct: 127 E-----YFDDLFCNLVDAGEQAGALESLLDRVASYKEKTEKLKAKIKKAMTYPIAVLIVA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA------------AFMLIGIMVMRL 181 + + V D L+ + + G + + Sbjct: 182 IIVSGILLIKVVPQFQSVFAGFGADLPAFTLMVIGLSKIVQEWWLLIVGLLFAGFFLFKR 241 Score = 38.9 bits (89), Expect = 0.29, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 43/129 (33%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG+P+ +A+ + G + + V +V + G+ L+ S+ Sbjct: 277 RTLATTFAAGVPLVEALDSVAGATGNVVFKNAVNKVKQDVSTGMQLNFSMRSTG------ 330 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + ++ + G L L ++ D + ME A++ + Sbjct: 331 VFPSLAIQMTAIGEESGALDTMLDKVATYYEDEVDNMVDNLTSLMEPMIMAFLGVIVGGL 390 Query: 140 VSTLVYFTS 148 V + Sbjct: 391 VIAMYLPIF 399 >gi|283779212|ref|YP_003369967.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283437665|gb|ADB16107.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 329 Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 61/146 (41%), Gaps = 3/146 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQ 59 L +KR P+ALD++V V AGL + A+ + + + EF Sbjct: 165 WLGRKRKESIFLGLPDALDLMVVCVEAGLGLDQAMRKVSEEMRKSYRVIAEEFSLCNLQL 224 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 +G ++ + + + ++ S+++ + G ++++AL S +R R+ A+ Sbjct: 225 QMGRGRTQVLQELGSRSGVDDLKSLSSILIQADKFGSSIAQALRVQSDAMRTRRRQIAEE 284 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVY 145 +A K ++ + + ++ Sbjct: 285 KAAKTAVKLIFPLVLFIFPGIFVVLV 310 >gi|229816458|ref|ZP_04446759.1| hypothetical protein COLINT_03512 [Collinsella intestinalis DSM 13280] gi|229808000|gb|EEP43801.1| hypothetical protein COLINT_03512 [Collinsella intestinalis DSM 13280] Length = 247 Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 81/179 (45%), Gaps = 1/179 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +K+ + A + S+ +GL ++ A+ + + +PVR+EF R G + Sbjct: 67 RKKRERLEGAMVEAFGALAASMASGLSLAQAMRYVGSHAQEPVRTEFLRAEAQVACGAGM 126 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +E++ +V + + F + + V + G LS+ L +R++R+R ++ K+ + + Sbjct: 127 TEALDELVERLHAPGLDFVTLALKVSRRTGAPLSDVLGEATRLVRERVELRRKLDVRTAQ 186 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + SA ++ +P + + S + + G + VA I ++++++ Sbjct: 187 VRMSARLVAGMPVAMVAFLAAASSDFREGI-ATVPGAASIAVALLLDGIAWSIIKVVMR 244 >gi|225158976|ref|ZP_03725287.1| type II secretion system protein [Opitutaceae bacterium TAV2] gi|224802417|gb|EEG20678.1| type II secretion system protein [Opitutaceae bacterium TAV2] Length = 440 Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 62/201 (30%), Gaps = 32/201 (15%) Query: 6 KKRTAKF-------LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIE 57 KK+ F + + AG+P+ ++ + Q + V E Sbjct: 84 KKKKQAFVIGKIINQKGLTLFTRQLATLINAGMPILRSLETLARQEKNIPFKNVVEDVAE 143 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 T G + S+ + + + + + GG L L L++ + +K Sbjct: 144 TIRSGGTFSDGLLQNPK-----VFDRLYVNMVKAGEAGGVLGTVLDRLAKFMEKAMKIKG 198 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL------------ 165 KV++ I+ VS L+ F P + + +G L Sbjct: 199 KVKSAMTYPI---IILFVAVAIVSALMVFVIPKFQEIFDGLLKGQPLPDITRLVLGVSNF 255 Query: 166 ----GVAAAFMLIGIMVMRLM 182 + ++IG + M Sbjct: 256 VKDHFIITLILVIGGWIGFKM 276 Score = 38.9 bits (89), Expect = 0.28, Method: Composition-based stats. Identities = 12/129 (9%), Positives = 36/129 (27%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+P+ A+ + S + + + + R P Sbjct: 309 FTRTLGTLLSSGVPILQALLITRDTSGNVHVANALNAVHDRVKEGDSVGKPLEATRIFP- 367 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G L + L ++ + D + +E ++ + Sbjct: 368 ----TMVSSMVEVGEETGALPDMLNRIADVYDDEVDNAVASVTSIIEPVMIVFLAVIVGT 423 Query: 139 CVSTLVYFT 147 V + Sbjct: 424 IVIAMFMPL 432 >gi|73542915|ref|YP_297435.1| general secretion pathway protein F [Ralstonia eutropha JMP134] gi|72120328|gb|AAZ62591.1| General secretion pathway protein F [Ralstonia eutropha JMP134] Length = 405 Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 21/178 (11%), Positives = 56/178 (31%), Gaps = 8/178 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 L +R + + + +GLP+ +A+ + Q+ V + Sbjct: 56 SQLFTRRLSTQEQAL--FTRQLASLIVSGLPLDEALGALADQAERPYVHELLAGIRAEVM 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SLS ++++ R + + + G+L L L+ + R + +K++ Sbjct: 114 GGSSLSVALAQHPR-----DFPDIYRALVSAGEHSGHLGLVLERLAGYIESRNALTSKIR 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + ++ + + V ++ +A + + Sbjct: 169 LAFTYPAIVTVVAFAIVIFLLSYVVPQVVSVFANTKQKLPTLTIVMLALSDFVRNWWW 226 >gi|297571777|ref|YP_003697551.1| type II secretion system protein F [Arcanobacterium haemolyticum DSM 20595] gi|296932124|gb|ADH92932.1| Type II secretion system F domain protein [Arcanobacterium haemolyticum DSM 20595] Length = 270 Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 70/175 (40%), Gaps = 3/175 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D +P+ LD +V S+RAGL VS ++A++ + + +R F R + ++ + Sbjct: 84 DAWPDVLDDVVASLRAGLSVSQSLAMVGERGPELMREPFSRCATMIRAQGRMGPALDELK 143 Query: 74 RYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G +L+ LA L+ ++R+ + ++ A A + Sbjct: 144 AEFADPMADRVLEAMRLSHELGGRDLATMLARLAAVIREDNRARGELLARQSWTVNGARM 203 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + P+ + L T PG + + P G +L + + M + V Sbjct: 204 AAAAPWALLGLFS-TRPGTVEA-FSSPAGIAVLCGGVIVTALAYVAMIKLGQLTV 256 >gi|293604635|ref|ZP_06687037.1| type II secretion system protein F domain protein [Achromobacter piechaudii ATCC 43553] gi|292816966|gb|EFF76045.1| type II secretion system protein F domain protein [Achromobacter piechaudii ATCC 43553] Length = 236 Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 57/147 (38%), Gaps = 1/147 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + L +KR D P D++ V AGL V A+ +R + + Sbjct: 79 LHGLSEKRRRSIERDLPFVFDMMTLCVEAGLSVQGALQQAAQSGPKGALRDALAQALAEM 138 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G++ ++I + ++ ++ LG +L L + R ++++A+ Sbjct: 139 RAGVTRMDAIKALADRSNSPVAKTWAGALAQAEALGISLGPVLRAQAAQCRSDRHVRAEQ 198 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146 QA+ K +IG + C ++ F Sbjct: 199 QAMQAPVKMLLPLIGCIFPCTFIVLAF 225 >gi|59711125|ref|YP_203901.1| bipartite nuclear localization signal containing protein [Vibrio fischeri ES114] gi|59479226|gb|AAW85013.1| bipartite nuclear localization signal containing protein [Vibrio fischeri ES114] Length = 290 Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 71/159 (44%), Gaps = 4/159 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV--IET 58 ++ IK R + P LD++ V+ G+ V +++ +V + + + + + Sbjct: 133 LQAKIKARVHRVSTQMPYLLDLMAVCVQTGMTVEASLSYLVKEMKGFNKDLTQVLTKMNE 192 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + L +S+ M +P E+ F ++ G ++ L L+ +R+ + ++ + Sbjct: 193 RSRMVGLEKSLEEMYVEIPSNEMRSFVMTLTQSMHYGSSIYNVLTTLASDIREVQMLELE 252 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + + AK S +I + + L+ PG M +++N Sbjct: 253 ERIGKLAAKMSVPLIVFIMIPIVILIAA--PGVMRLMLN 289 >gi|116623251|ref|YP_825407.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116226413|gb|ABJ85122.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 304 Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 59/146 (40%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ + +R PN LD++V V +GL + + + + + +EF + Sbjct: 139 VQFCVGRRRKAIERGLPNTLDLMVVCVESGLGIDQTTLQVAKELHWAHPEICAEFTVMNL 198 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ +E++ + + +V V+ + G +++++L + LR +A Sbjct: 199 ELRAGIRRAEALHNLAERTGVDDVKKLVAVLVQTDRFGTSIAQSLRGHAEYLRTMARQRA 258 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K I + + + Sbjct: 259 EERASKLAVKLVFPIFFCVLPSLFVV 284 >gi|91977990|ref|YP_570649.1| type II secretion system protein [Rhodopseudomonas palustris BisB5] gi|91684446|gb|ABE40748.1| type II secretion system protein [Rhodopseudomonas palustris BisB5] Length = 324 Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 61/148 (41%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +K+ I KR FP+ALD+++ + +G+ + A + + S P+ E Sbjct: 166 LKNAISKRQLSIKRAFPDALDLLLICIESGMSIEAAFRKVSIEIGTQSIPLAEELTLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + L+ V + + G LS++L +++ RD + +A Sbjct: 226 ELSYLPDRKQAYENLAIRTGLEGVKSVCLALQQSERYGTPLSQSLRVMAQENRDMRMNEA 285 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A ++ K + +I + ++ Sbjct: 286 EKKAAALPPKLTVPMIVFFLPVLFVVIL 313 >gi|320326053|gb|EFW82110.1| type II secretion system protein [Pseudomonas syringae pv. glycinea str. B076] gi|320330218|gb|EFW86203.1| type II secretion system protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330880435|gb|EGH14584.1| type II secretion system protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 405 Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 17/171 (9%), Positives = 50/171 (29%), Gaps = 5/171 (2%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D + ++AG+P+ + +I + +P ++ + + Sbjct: 67 DIAFFSRQMATMMKAGVPLLQSFDIISEGAENPNMRALVNSLKQEVSAGN----SFATAL 122 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + G L L ++ + +KAK++ A + Sbjct: 123 RQKPEYFDDLFCNLVDAGEQAGALESLLDRVATYKEKTEKLKAKIKKAMTYPAAVLIVAV 182 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + V + L+ + +I + +++ F Sbjct: 183 IVSGILLIKVVPQFQSVFAGFGAELPMFTLMVIGL-SEVIQQWWIAIVVAF 232 Score = 38.9 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 42/129 (32%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG+P+ +A+ + G + + V +V + G+ L+ S+ Sbjct: 277 RTLATTFAAGVPLVEALDSVAGATGNVVFKNAVNKVKQDVSTGMQLNFSMRATG------ 330 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + ++ + G L L ++ D + ME A + + Sbjct: 331 VFPSLAIQMTAIGEESGALDNMLDKVATYYEDEVDNMVDSLTSLMEPMIMAILGVVVGGL 390 Query: 140 VSTLVYFTS 148 V + Sbjct: 391 VIAMYLPIF 399 >gi|152967077|ref|YP_001362861.1| type II secretion system protein [Kineococcus radiotolerans SRS30216] gi|151361594|gb|ABS04597.1| type II secretion system protein [Kineococcus radiotolerans SRS30216] Length = 291 Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 22/174 (12%), Positives = 69/174 (39%), Gaps = 2/174 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + N + + ++ + + A+ S+ +R +++ + L +++ R Sbjct: 105 EGLANWTESLRDTIAGAIGLEQAIPATAATSAPVLRPSLNLLVDRLRVREPLPDALLRFA 164 Query: 74 RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + ++ G L + L L+ R+ +++ +++A + S I Sbjct: 165 DDVDDPSADVVVAALVLNARLRGPGLRDVLTALAASTREELDVRRRIEASRRSIRRSVQI 224 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + + V ++ + Y+ + G + L V A +++G+ +R + + Sbjct: 225 VLLIVLGVMGVLSVFNRSYVAP-YSTFSGQVALIVVAGLLVLGLTWLRRLARVE 277 >gi|37680835|ref|NP_935444.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016] gi|37199584|dbj|BAC95415.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016] Length = 329 Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 70/157 (44%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + H +KKR P+ALD++V +GL + A+ + + S E V Sbjct: 170 LNHFVKKRQRMIRAGVPDALDLLVVCTESGLGFNAALRKVADELAISHPEFADELDTVCA 229 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ +S + +V L E++ ++S S++GG+LS+ L + + RD++N + Sbjct: 230 KIKAGVEMSTAFEELVTRTGLSEINGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEV 289 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + A + K ++ + C + P +++ Sbjct: 290 EEIAAKIPTKMIFPLLLFIWPC--FFIVAVGPALLSL 324 >gi|329905442|ref|ZP_08274132.1| Flp pilus assembly protein TadC [Oxalobacteraceae bacterium IMCC9480] gi|327547599|gb|EGF32397.1| Flp pilus assembly protein TadC [Oxalobacteraceae bacterium IMCC9480] Length = 312 Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 3/156 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQ 59 + I R + L P LDI+ V AGL + A++ V + R E +RV+ Sbjct: 155 LHDRIALRQREILKSLPFFLDIVTLCVEAGLNLQGALSQAVDKGPPGAFRDECQRVLRDV 214 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + +E++ M + ++ F T + +G NL L + R + +A+ Sbjct: 215 RAGKARAEALRAMAERLREPGITSFVTSVIQAESMGMNLGPVLRAQADQRRSERFQRAEK 274 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 +AL K +I + C +++F P M L Sbjct: 275 KALEAPVKLLLPLIAFIFPCTFIVLFF--PIVMQFL 308 >gi|197118215|ref|YP_002138642.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem] gi|197087575|gb|ACH38846.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem] Length = 304 Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 59/158 (37%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 + R P+ LD++ V AGL + A+ + P+ +EF VI Sbjct: 144 LDRRAGVRKTAIFHALPDVLDLLTVCVEAGLGLDAAIIKTAENFQEKNCPLIAEFNAVIL 203 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G SE++ + L ++ +++ +LG +L + L S LR ++ A Sbjct: 204 EIRAGRPRSEALKGLAERTTLDDIKALVSMLIQTEKLGTSLGKTLRIYSDSLRTKRKQLA 263 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A K + + +V P + + Sbjct: 264 EERAAKTAVKMLFPLTFCVFPA--FMVVLLVPAFFRIF 299 >gi|311031469|ref|ZP_07709559.1| type II secretion system protein [Bacillus sp. m3-13] Length = 402 Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 57/171 (33%), Gaps = 6/171 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 DF L +RAG+ V +A V+ Q+S ++ V E G LSE+ ++ Sbjct: 62 RDFVIFLRQFSTLIRAGISVVEATNVLAQQTSSKALKRVLFDVEEEMKQGNPLSEAAAKH 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + S + + G L + L L+ + + K+ + I Sbjct: 122 PK-----VFSSMFINMIKAGEASGALDDTLDRLATQFEKQNETRQKIVSALTYPLVLGVI 176 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + V T + D + A+ + + L+I Sbjct: 177 AIGVVIFLLVGVVPTFVAMFSDFGADLPLITRFVLWASEWMQSFWWLFLLI 227 >gi|302553075|ref|ZP_07305417.1| integral membrane protein [Streptomyces viridochromogenes DSM 40736] gi|302470693|gb|EFL33786.1| integral membrane protein [Streptomyces viridochromogenes DSM 40736] Length = 282 Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 59/162 (36%), Gaps = 1/162 (0%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + VRAG +A+ + V+ G + +++ R + + Sbjct: 116 LAGEVRAGRQPGEALLRAARDC-GGLADAQATVLAAARFGGDVPGALATAARQPGAEGLR 174 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + V G L+ L L+ LR ++ ++ + A A+ +A ++ LP Sbjct: 175 GLAACWRVAVDQGAGLAAGLDRLTAALRAERDQRSDLSAQLAGARTTAVMLAGLPALGLL 234 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + ++VL++ G L A +G+ + ++ Sbjct: 235 IGTALGADPLHVLLHTTAGLGCLMAGGALEGLGLWWVLRIVR 276 >gi|21221974|ref|NP_627753.1| integral membrane protein [Streptomyces coelicolor A3(2)] gi|4539573|emb|CAB38492.1| putative integral membrane protein [Streptomyces coelicolor A3(2)] Length = 321 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 66/183 (36%), Gaps = 5/183 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + ++R + + VRAG +A+ S+ + V+ Sbjct: 138 RRAKERRQDAVIA----LCGTLAGEVRAGRQPGEALLCAAQDSAG-LGEAQAAVLAAARF 192 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + +++ + + + V G L+ L L LR ++ ++ ++A Sbjct: 193 GGDVPGALALAAGQPGAEGLRGLAACWRVAVDQGAGLAAGLDRLEGALRAERDQRSDLRA 252 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 A+A+A ++ LP L ++VL++ G L A +G+ + Sbjct: 253 QLAGARATAVMLAGLPVLGLLLGVALGSDPLHVLLHTGAGVGCLLAGGALESLGVWWVTR 312 Query: 182 MIN 184 ++ Sbjct: 313 IVR 315 >gi|27365114|ref|NP_760642.1| Flp pilus assembly protein TadC [Vibrio vulnificus CMCP6] gi|320155497|ref|YP_004187876.1| type II/IV secretion system protein TadC, associated with Flp pilus assembly [Vibrio vulnificus MO6-24/O] gi|27361260|gb|AAO10169.1| Flp pilus assembly protein TadC [Vibrio vulnificus CMCP6] gi|319930809|gb|ADV85673.1| type II/IV secretion system protein TadC, associated with Flp pilus assembly [Vibrio vulnificus MO6-24/O] Length = 314 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 70/157 (44%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + H +KKR P+ALD++V +GL + A+ + + S E V Sbjct: 155 LNHFVKKRQRMIRAGVPDALDLLVVCTESGLGFNAALRKVADELAISHPEFADELDTVCA 214 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ +S + +V L E++ ++S S++GG+LS+ L + + RD++N + Sbjct: 215 KIKAGVEMSTAFEELVTRTGLSEINGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEV 274 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + A + K ++ + C + P +++ Sbjct: 275 EEIAAKIPTKMIFPLLLFIWPC--FFIVAVGPALLSL 309 >gi|116671473|ref|YP_832406.1| type II secretion system protein [Arthrobacter sp. FB24] gi|116611582|gb|ABK04306.1| type II secretion system protein [Arthrobacter sp. FB24] Length = 292 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 62/145 (42%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R K + PN LD ++ +V AGL A+A P+ E R ++ Sbjct: 136 IYSRGQERQKKIQLELPNTLDQMLIAVEAGLGFESAMARAGQNGKGPLAEELIRTLQDMQ 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S +S + +Q++ F + G +++ L ++ +R ++ +A+ + Sbjct: 196 VGRSRRDSYLALAERSNVQDLRTFVRAVVQADTYGIAIAKVLKAQAKEMRVKRRQRAEQK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145 A+ + ++ + + ++ Sbjct: 256 AMKLPVLVLFPLLLFIFPVIFIVIL 280 >gi|323341960|ref|ZP_08082193.1| flp pilus assembly protein TadC [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464385|gb|EFY09578.1| flp pilus assembly protein TadC [Erysipelothrix rhusiopathiae ATCC 19414] Length = 306 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 1/144 (0%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P +DI+ SV AGL A+ + ++ P+ EFR LG E+++R+ Sbjct: 162 QLPEVMDILSVSVVAGLSFDQALGHVTTKAEGPLIEEFRICQREIMLGKPRKEALNRLSE 221 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA-SAWII 133 ++EV F+ I +LG +L L + S+++R + +A + K ++ Sbjct: 222 RTEIEEVKSFTNAIIQADELGISLQNVLMSQSQMIRTSHRQDVEERAAKIPVKILIPMVL 281 Query: 134 GSLPFCVSTLVYFTSPGYMNVLIN 157 P L+ P ++ L Sbjct: 282 FIFPVIFIILLGPAVPTIIDALGG 305 >gi|71734826|ref|YP_273101.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555379|gb|AAZ34590.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. phaseolicola 1448A] Length = 405 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 18/180 (10%), Positives = 50/180 (27%), Gaps = 18/180 (10%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73 D + ++AG+P+ + +I + +P + + G S + ++ + Sbjct: 67 DIAFFSRQMATMMKAGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRQKP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G L L ++ + +KAK++ A + Sbjct: 127 E-----YFDDLFCNLVDAGEQAGALESLLDRIASYKEKTEKLKAKIKKAMTYPIAVLIVA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA------------AFMLIGIMVMRL 181 + + V + L+ + +G + + Sbjct: 182 IIVSGILLIKVVPQFQSVFAGFGAELPAFTLMVIGLSDIVQKWWLAIVGLFFVGAFLFKR 241 Score = 38.6 bits (88), Expect = 0.38, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 42/129 (32%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG+P+ +A+ + G + + V +V + G+ L+ S+ Sbjct: 277 RTLATTFAAGVPLVEALDSVAGATGNVVFRDAVNKVKQDVSTGMQLNFSMRSTG------ 330 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + ++ + G L L ++ D + ME A + + Sbjct: 331 VFPSLAIQMTAIGEESGALDNMLDKVATYYEDEVDNMVDNLTSLMEPMIMAVLGVIVGGL 390 Query: 140 VSTLVYFTS 148 V + Sbjct: 391 VIAMYLPIF 399 >gi|269958189|ref|YP_003327977.1| type II secretion system protein [Xylanimonas cellulosilytica DSM 15894] gi|269306870|gb|ACZ32419.1| type II secretion system protein [Xylanimonas cellulosilytica DSM 15894] Length = 291 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 67/178 (37%), Gaps = 3/178 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R K + + G+ + +A+ + + D +R E ++ +S + Sbjct: 99 RIDKLE-ALEEWTRGLAGVLTVGVGLEEALRATLRSTPDAIRPEVTTLVARLRARMSTED 157 Query: 68 SISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + ++ + + G L+ L +L+ + + ++A + Sbjct: 158 ALRAFADDLDDATGDLVASFLISGARRRGQGLASVLNSLAESVAADVRARRAIEADRAKP 217 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +A+A + + V +++ S Y+ P G +LL + A + ++ MR M Sbjct: 218 RATARWVTIITLGVLGVLFIFSSEYLAP-YRTPAGQLLLALFLAIYVSLLIWMRAMAK 274 >gi|239996354|ref|ZP_04716878.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshG (pilus type IV) [Alteromonas macleodii ATCC 27126] Length = 411 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 18/171 (10%), Positives = 58/171 (33%), Gaps = 6/171 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRM 72 D+ + ++AG+P+ A+ + +S E + + + G SLS S+++ Sbjct: 70 DEMIIFSRQMYSLLKAGIPIIRAIKGLSENASHKRFQEILKDIADQLEQGRSLSSSMAKY 129 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + V + G L + L+ + + ++++ Sbjct: 130 EK-----VFTRLTISVVVVGENTGKLDDVFLQLALYFEREQETRKRIKSALRYPTFVLIA 184 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + F ++ V + + + + + + +++ Sbjct: 185 LAIAMFILNLFVVPVFTQMFERFDTELPIMTRVLIGTSNFFVNYWWLLIIV 235 Score = 38.6 bits (88), Expect = 0.39, Method: Composition-based stats. Identities = 11/127 (8%), Positives = 34/127 (26%), Gaps = 5/127 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 +RAG+P++ +++ + + + + + S + + Sbjct: 280 RSFSMILRAGVPLTAGLSLTADAVDNAHMQ-----KRIKEMRQGIEKGESLLRVSKNSEL 334 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 S + + G L L + + K +E ++ + Sbjct: 335 FSTLVLQMIAVGEETGRLEPLLEESADYYEREVDFDLKSLTAKIEPILIGFVAVMVLILA 394 Query: 141 STLVYFT 147 + Sbjct: 395 LGIFTPM 401 >gi|254445165|ref|ZP_05058641.1| Bacterial type II secretion system protein F domain [Verrucomicrobiae bacterium DG1235] gi|198259473|gb|EDY83781.1| Bacterial type II secretion system protein F domain [Verrucomicrobiae bacterium DG1235] Length = 390 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 53/164 (32%), Gaps = 6/164 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVR 74 + + AGLP+ A+ + Q+ DPV R V G + S + ++ R Sbjct: 52 LAVFTQQLASMLEAGLPLVSALDALQDQTEDPVFRIIIREVKADVSQGNNFSAACAKFPR 111 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + G L+E L ++ + KV++ A + Sbjct: 112 A-----FNNLFISMVEAGEASGGLAEILGKVAGYFEATTKLTKKVKSAMTYPVAVIALAI 166 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 L + V T + G + + L G ++ Sbjct: 167 MLVNVLLIFVVPTFADMFTDFGAELPGPTQFLIDLSDFLKGNIL 210 Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 13/133 (9%), Positives = 38/133 (28%), Gaps = 5/133 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +R+G+P+ + ++ S + R+I ++SE Sbjct: 255 LSRFCRTYATLLRSGVPILRCLEIVAASSGKTQVEDACRLI-----TKNISEGGQVSDTI 309 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 ++ +S + GN+ + ++ + +E ++ Sbjct: 310 EKIEFFPPMMKHMSRAGEQTGNVDGMMTKIADFYDTEADAIISSLTSLIEPMLIVFLGVV 369 Query: 136 LPFCVSTLVYFTS 148 + V + Sbjct: 370 VGGIVMAMFMPIF 382 >gi|331018826|gb|EGH98882.1| type II secretion system protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 405 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 18/166 (10%), Positives = 51/166 (30%), Gaps = 6/166 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMV 73 D + ++AG+P+ + +I + +P + + G S + ++ + Sbjct: 67 DIAFFSRQMATMMKAGVPLLQSFDIIGEGAENPNMRTLVGSLKQEVSAGNSFATALRQKP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G L L ++ + +KAK++ A + Sbjct: 127 E-----YFDDLFCNLVDAGEQAGALESLLDRVASYKEKTEKLKAKIKKAMTYPIAVLIVA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + V D L+ + + ++ ++ Sbjct: 182 IIVSGILLIKVVPQFQSVFAGFGADLPAFTLMVIGLSKIVQEWWLL 227 Score = 39.3 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 43/129 (33%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG+P+ +A+ + G + + V +V + G+ L+ S+ Sbjct: 277 RTLATTFAAGVPLVEALDSVAGATGNVVFKNAVNKVKQDVSTGMQLNFSMRSTG------ 330 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + ++ + G L L ++ D + ME A++ + Sbjct: 331 VFPSLAIQMTAIGEESGALDAMLDKVATYYEDEVDNMVDNLTSLMEPMIMAFLGVIVGGL 390 Query: 140 VSTLVYFTS 148 V + Sbjct: 391 VIAMYLPIF 399 >gi|196231539|ref|ZP_03130397.1| type II secretion system protein [Chthoniobacter flavus Ellin428] gi|196224392|gb|EDY18904.1| type II secretion system protein [Chthoniobacter flavus Ellin428] Length = 406 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 49/170 (28%), Gaps = 1/170 (0%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R D + V AGLP+ + + Q+ ++ RR+I + + Sbjct: 54 RGKITETDLVLFTRQLATMVDAGLPLVAGLTALYEQADPKRQAGLRRIIGEVSALVQQGD 113 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 S + + + GG L+E L L+ L +K KV++ Sbjct: 114 SFFE-AISKHPSVFNRLYVSMVKAGESGGLLAEILDRLATFLESAARLKKKVKSAMTYPV 172 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 I + + V + + + + G Sbjct: 173 IVLCIALCITTFLIVKVVPVFGEIFADFGANLPAPTQFLLDLSSFIRGNW 222 Score = 36.3 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 11/130 (8%), Positives = 35/130 (26%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + +RAG+P+ + ++++ S + V E + + + Sbjct: 271 FARTFAQLIRAGVPILEVMSIVGDTSGNYVVEESIK-----KVSADIERGDHLASSLARE 325 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G + L ++ + +E + + Sbjct: 326 KIFPPMLVRMVGAGEQTGKIDAMLEKMADFWDEEIEAILNALTSLIEPLLIVVLGVIVGG 385 Query: 139 CVSTLVYFTS 148 V + Sbjct: 386 IVIAMFLPIF 395 >gi|188581665|ref|YP_001925110.1| type II secretion system protein [Methylobacterium populi BJ001] gi|179345163|gb|ACB80575.1| type II secretion system protein [Methylobacterium populi BJ001] Length = 323 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 64/159 (40%), Gaps = 4/159 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + ++ KR A+ +P+ALD+ + V +G+ V +A + + + + E + Sbjct: 164 LSNMTTKRQAEIRRAWPDALDLCLICVESGMSVENAFRRVSLEIASQSTVLAEELALLTA 223 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + L+ V +T + + G + +AL L++ RD + +A Sbjct: 224 ELSFLPERRVAYENLALRTGLESVKSLTTALMQAERYGTPVGQALRVLAQESRDFRMTEA 283 Query: 118 KVQALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A ++ K I+ LP L+ ++ Sbjct: 284 EKKAAALPPKLTVPMILFFLPVLFVVLLTPAGIQAYALM 322 >gi|332976658|gb|EGK13498.1| pilin secretion/fimbrial assembly system protein [Psychrobacter sp. 1501(2011)] Length = 238 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 17/168 (10%), Positives = 57/168 (33%), Gaps = 8/168 (4%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLG 62 ++KK+ D + +AG+P+ ++ +++ + + ++ + G Sbjct: 59 IVKKKIRAL--DIAVFARQLATMTKAGVPLLQSLDIVIETLTKPSMIEVVEQLKYSIESG 116 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + ++S+ + + + G+L L ++ +++K+K++ Sbjct: 117 TPFAAALSKHPKQ-----FDNLFCALVSAGEYSGSLDIMLERIATYKEKSEHLKSKIKKA 171 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 A + + + V + + L V+ + Sbjct: 172 IKYPIAVTSVAIMVSLILLLKVVPVFSELFDSFDSQLPAFTQLVVSIS 219 >gi|330720593|gb|EGG98858.1| Type IV fimbrial assembly protein PilC [gamma proteobacterium IMCC2047] Length = 407 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 21/175 (12%), Positives = 55/175 (31%), Gaps = 8/175 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRM 72 D + ++AG+P+ + ++ + E + G + + ++ + Sbjct: 68 ADITLFTRQMATMMKAGVPLVQSFDIVSDGIDNLTLKELVSTIKTDVASGNNFASALRKH 127 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R+ + + G L L L+ + +K K++ A + Sbjct: 128 PRH-----FDELMCNLVESGEQSGALETMLDRLATYKEKNETLKKKIKKAMTYPIAVIVV 182 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMINF 185 + + V T + M++G++ +V+ +I F Sbjct: 183 AIIVTGILLVKVVPTFAEIFEGFGAELPAFTQMVIGISEVLQAWWYIVVAAVIAF 237 Score = 38.2 bits (87), Expect = 0.51, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 40/131 (30%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P+ +A+ G + + V S RV E G L+ S+ Sbjct: 277 FARTLSTTFAAGVPLVEALTSTAGATGNVVYSSAVERVREDVSTGQQLNFSMRN------ 330 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + G L E L + + + ME A + + Sbjct: 331 TNVFPNMLIQMTAIGEESGALDEMLDKAAEFYEEEVDNAVDNLTALMEPMIMAVLGVLIG 390 Query: 138 FCVSTLVYFTS 148 + + Sbjct: 391 GLIIAMYLPIF 401 >gi|171057240|ref|YP_001789589.1| type II secretion system protein [Leptothrix cholodnii SP-6] gi|170774685|gb|ACB32824.1| type II secretion system protein [Leptothrix cholodnii SP-6] Length = 408 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 21/166 (12%), Positives = 49/166 (29%), Gaps = 6/166 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + ++AG+P+ A ++ S+ + + G SLS + R Sbjct: 69 KDIAVFTRQLATMLKAGVPLLQAFDIVARGSSNPRLTRMLTDIRGDVETGTSLSAAFRRH 128 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L L+ ++ K+++ + A + Sbjct: 129 PLQ-----FDALYCNLVEAGESAGILETLLDRLANYQEKTIELQNKIRSALIYPVAVLVV 183 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + V + D L+ +A + + Sbjct: 184 AFIVVAVIMIFVIPSFKDIFKSFGADLPLPTLIVIAMSEFFVQYWF 229 Score = 35.9 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 16/128 (12%), Positives = 41/128 (32%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + AG+P+ +A+ + G + + V T+ + +S + Sbjct: 280 RTLSTMFAAGVPLVEALDSVGGAAGNAVF-----AQATEQIQRDVSTGAALTSSMQATNI 334 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 +S + G+L + L+ ++ + K + ME + + V Sbjct: 335 FPNMVLQMSSIGEESGSLDQMLSKVADFYEQEVDEAVKGLSTLMEPIIIVVLGTIIGGIV 394 Query: 141 STLVYFTS 148 ++ Sbjct: 395 VSMYLPIF 402 >gi|170750194|ref|YP_001756454.1| type II secretion system protein [Methylobacterium radiotolerans JCM 2831] gi|170656716|gb|ACB25771.1| type II secretion system protein [Methylobacterium radiotolerans JCM 2831] Length = 325 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 68/158 (43%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + + KKR + +P+ALD+ + V +G+ + +A + + SS + E + Sbjct: 167 LVNTAKKRQTEIRKAWPDALDLTLICVESGMAIENAFRKVSTEIATSSVVLAEELALMTA 226 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ +V L+ V +T + + G + +AL LS+ RD + +A Sbjct: 227 EMSFLPDRRQAYENLVMRTGLEPVKSVATALIQAERYGTPVGQALRVLSQESRDMRMNEA 286 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A + K + +I + ++ +P + ++ Sbjct: 287 EKKAAGLPPKLTVPMILFFLPVLFVVI--ITPAVIQIM 322 >gi|119505106|ref|ZP_01627182.1| type IV pilus biogenesis protein PilC [marine gamma proteobacterium HTCC2080] gi|119459088|gb|EAW40187.1| type IV pilus biogenesis protein PilC [marine gamma proteobacterium HTCC2080] Length = 402 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 18/166 (10%), Positives = 51/166 (30%), Gaps = 6/166 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 D + ++AG+P+ + ++ + + + G L+ ++++ Sbjct: 63 ADIAIFSRQMATMMKAGVPLVQSFEIVQEGLENAAMSKLVGEIKSEVSSGGGLAPALAKH 122 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 ++ + + G L L ++ + +KAK++ A + Sbjct: 123 PKH-----FDELFCSLVASGENSGTLEVMLDRVATYKEKTEALKAKIRKAMTYPIAVIIV 177 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + V T D G L + + + + Sbjct: 178 AIVVTGILLVKVVPTFAETFKGFGADLPGFTLFVLGISEFVQQWWL 223 Score = 35.1 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 42/130 (32%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + AG+P+ +A+ G + + V + R I + + S + Sbjct: 272 FSRTLSTTFAAGVPLVEALDSTAGAAGNAVYARGIRQIRDDVMSGT-----SLHLATRGT 326 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 ++ + G+L E L+ ++ + + + ME + + + Sbjct: 327 GLFPAMLLQMTAIGEESGSLDEMLSKVADQYEAQVDNAVDSLSSLMEPIIMSILGVLVGG 386 Query: 139 CVSTLVYFTS 148 + + Sbjct: 387 LMIAMYLPIF 396 >gi|119899524|ref|YP_934737.1| type 4 pilus biogenesis protein [Azoarcus sp. BH72] gi|119671937|emb|CAL95851.1| type 4 pilus biogenesis protein [Azoarcus sp. BH72] Length = 411 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 54/179 (30%), Gaps = 7/179 (3%) Query: 1 MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAV-IVGQSSDPVRSEFRRVIET 58 ++ R K D + ++AG+P+ A + I G + + V Sbjct: 58 IRKQKLSRGHKIKDKDIALFTRQLATMMKAGVPLLQAFDIGIKGSGNPSLARLLNEVRTD 117 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G SLS++ S+ + + G L L ++ +K K Sbjct: 118 VETGSSLSQAFSKHP-----VYFDKLFCNLVGAGEQAGILDSLLDRIATYKEKILAIKGK 172 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 +++ A + + + V + G L+ +A + I Sbjct: 173 IKSALFYPIAVVVVAALVISVMMLFVIPEFKSVFTGFGAELPGPTLMVIAMSDFFIEYW 231 Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 14/129 (10%), Positives = 39/129 (30%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + AG+P+ +A+ + G + + + +++ G SL+ S+ Sbjct: 283 RTLSTMFSAGVPLVEALDSVGGAAGNYIYLMATKQIQTEVSTGTSLTVSMQNAA------ 336 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + G L L ++ + + +E ++ + Sbjct: 337 VFPTMVVQMVSIGEESGQLDSMLGKVADFYEQEVDDAVAGLSQLLEPLIMVFLGTVIGGL 396 Query: 140 VSTLVYFTS 148 V + Sbjct: 397 VVAMYLPIF 405 >gi|58425802|gb|AAW74839.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 489 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 20/173 (11%), Positives = 55/173 (31%), Gaps = 6/173 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + +++G+P+ ++ +I + ++ ++ G SL ESIS+ Sbjct: 149 KEIAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLYESISKH 208 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L ++ + + +K K++ + Sbjct: 209 PVQ-----FDELYRNLVRAGEGAGVLETVLETVATYKENIEALKGKIKKALFYPAMVVAV 263 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + V + L V A+ ++ + L++ Sbjct: 264 AIIVSAILLIFVVPQFEEVFKSFGAELPAFTQLLVNASRFMVSYWWLMLIVTV 316 Score = 40.1 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 15/137 (10%), Positives = 48/137 (35%), Gaps = 7/137 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISR 71 + +AG+P+ +A+ ++ G + + + E R+ + +G ++ ++ + Sbjct: 352 NSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEEAVFRMRDDVSVGYPVNMAMKQ 411 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + ++ + G L L ++ + N + +E + Sbjct: 412 VNLFPHM------VIQMTAIGEEAGALDAMLFKVAEYFEEEVNNAVDALSSLLEPLIMVF 465 Query: 132 IIGSLPFCVSTLVYFTS 148 I + V + Sbjct: 466 IGTIVGGMVIGMYLPIF 482 >gi|300914022|ref|ZP_07131339.1| Type II secretion system F domain protein [Thermoanaerobacter sp. X561] gi|300890707|gb|EFK85852.1| Type II secretion system F domain protein [Thermoanaerobacter sp. X561] Length = 303 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 79/183 (43%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L +++ K + F + + ++ ++ + A ++ +P++ RV+ Sbjct: 117 LDYLGRRKIRKTEEQFRDFVKMLGAYLKMVPSFAGAFIKAAEEAENPLKEHTDRVLRRFQ 176 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG L E++ + + + + I ++ +LS ++ L +R M ++ Sbjct: 177 LGEDLEEALKEF-KNIESTYIKVWIDSIIFAVRMKSDLSRVCERTAKKLYERIKMSNRIA 235 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVM 179 A++++AK+ + + + SP ++ + P G +++ AA I + ++ Sbjct: 236 AMTVQAKSLMVSLVGIMAFMIVSTVSVSPDFIRT-FSSPIGKLVIAYAALSYFISTLYIL 294 Query: 180 RLM 182 + + Sbjct: 295 KRI 297 >gi|225376646|ref|ZP_03753867.1| hypothetical protein ROSEINA2194_02288 [Roseburia inulinivorans DSM 16841] gi|225211529|gb|EEG93883.1| hypothetical protein ROSEINA2194_02288 [Roseburia inulinivorans DSM 16841] Length = 240 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 72/190 (37%), Gaps = 7/190 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-------DPVRSEFRRVIE 57 +KKR F + L + +VRAG AV + D V +++ Sbjct: 51 VKKRKKTLRLQFKDFLGSMSVAVRAGNVEIYAVKSALDDLRLSYSSKADIVLEVENMILQ 110 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + G+ L E L+++ F+ V SV + L I+RD+ ++ Sbjct: 111 YEKGGIPLKELFEDFADRSELEDIHSFAAVYSVIEGKSDRFGDILTQTEEIIRDKIEIEQ 170 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 +++ + AK+ ++ +P + + G ++ L GH+ +A + + Sbjct: 171 EIETTIISAKSETMVMLIMPIVIVVAMSGMGSGLLDSLFTTAAGHLSATIALIIFAVSYI 230 Query: 178 VMRLMINFDV 187 + + +V Sbjct: 231 LAVKSSDIEV 240 >gi|209809175|ref|YP_002264713.1| bacterial type II secretion system protein F [Aliivibrio salmonicida LFI1238] gi|208010737|emb|CAQ81128.1| bacterial type II secretion system protein F [Aliivibrio salmonicida LFI1238] Length = 292 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 61/157 (38%), Gaps = 4/157 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 + IK K P LD++ V G+ + ++A + + + V Sbjct: 134 LNSRIKTLRDKLSSQLPYLLDLLAMCVHTGMTIESSMAYLAKEMRGFDKDLAHMVSRTND 193 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + LS ++ + +P E+ F + G ++ L L+ +R+ + + + Sbjct: 194 RARIVGLSVALDELYIKVPTNEMRSFVMTLKQSLHYGSSIYGILNTLAEDIRNVRLLSLE 253 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + AK S +I + V L+ PG M ++ Sbjct: 254 EKVGKLAAKMSVPLILFIMIPVVILIAA--PGIMRMM 288 >gi|261820219|ref|YP_003258325.1| type II secretion system F domain protein [Pectobacterium wasabiae WPP163] gi|261604232|gb|ACX86718.1| Type II secretion system F domain protein [Pectobacterium wasabiae WPP163] Length = 319 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +K R K P+ALD++V AGLP+ + V+ + SS + E Sbjct: 159 LKWRAASRGEKLARAVPDALDLMVVCAEAGLPIGRVLQVVSKELGLSSPEMADELHYTAA 218 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + ++ + + E+ + + G LS+AL ++ R + Sbjct: 219 ELQILSDRTLAMRHLAERTRVSEIESMVATLIQAERYGTPLSQALRTIADESRKTLILGL 278 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + +A + A+ S ++ + + ++ Sbjct: 279 EEKAGKLPAQLSVPLMALILPPIIAIM 305 >gi|87199542|ref|YP_496799.1| type II secretion system protein [Novosphingobium aromaticivorans DSM 12444] gi|87135223|gb|ABD25965.1| type II secretion system protein [Novosphingobium aromaticivorans DSM 12444] Length = 322 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 65/149 (43%), Gaps = 3/149 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ +R + FPN LD+I+ V AGL + A + + + V R Sbjct: 158 VRIKADRRMEAITNGFPNCLDLILVCVEAGLGMEAAFDRVSREIARAEPQVAHLLVRTNL 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + E++ RM + E+ F+T++ +LG ++ L + +R+++ M+A Sbjct: 218 HLRAGATREEALHRMATLAGVDEIRSFATLLIQSEKLGTSIGTTLRVFASEMREKRRMRA 277 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF 146 + +A + S ++ + + ++ Sbjct: 278 EEKAHRLPVLISLPLVTCMLPTMIGVLMI 306 >gi|84387237|ref|ZP_00990258.1| Flp pilus assembly protein TadC [Vibrio splendidus 12B01] gi|84377884|gb|EAP94746.1| Flp pilus assembly protein TadC [Vibrio splendidus 12B01] Length = 323 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 73/158 (46%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + L K+R K + P+ALD++V +GL + A+ + + E V Sbjct: 158 LSKLQKERQKKIRNGVPDALDLLVVCTESGLGFNAALGRVASELYVSQPEFADELETVFA 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+++ +++ +++ L E+ +++S S++GG+L++ L + + RD++ A Sbjct: 218 KIQAGVTMPDALRQLIERTGLVELEGLVSLLSHASRMGGSLAQTLRDYTEDFRDKRQQAA 277 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + A + K ++ + C + PG + V+ Sbjct: 278 EEIAAKIPTKMLFPMLIFIWPC--FFIVALGPGLLIVM 313 >gi|330954319|gb|EGH54579.1| type II secretion system protein [Pseudomonas syringae Cit 7] Length = 405 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 18/166 (10%), Positives = 51/166 (30%), Gaps = 6/166 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMV 73 D + ++AG+P+ + +I + +P + + G S + ++ + Sbjct: 67 DIAFFSRQMATMMKAGVPLLQSFDIISEGAENPNMRTLVGSLKQEVSAGNSFATALRQKP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G L L ++ + +KAK++ A + Sbjct: 127 E-----YFDDLFCNLVDAGEQAGALESLLDRVASYKEKTEKLKAKIKKAMTYPIAVLIVA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + V D L+ + + ++ ++ Sbjct: 182 IIVSGILLIKVVPQFQSVFAGFGADLPAFTLMVIGLSKIVQEWWLL 227 Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 43/129 (33%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG+P+ +A+ + G + + V +V + G+ L+ S+ Sbjct: 277 RTLATTFAAGVPLVEALDSVAGATGNVVFKNAVNKVKQDVSTGMQLNFSMRSTG------ 330 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + ++ + G L L ++ D + ME A++ + Sbjct: 331 VFPSLAIQMTAIGEESGALDTMLDKVATYYEDEVDNMVDNLTSLMEPMIMAFLGVIVGGL 390 Query: 140 VSTLVYFTS 148 V + Sbjct: 391 VIAMYLPIF 399 >gi|297583739|ref|YP_003699519.1| type II secretion system F domain-containing protein [Bacillus selenitireducens MLS10] gi|297142196|gb|ADH98953.1| Type II secretion system F domain protein [Bacillus selenitireducens MLS10] Length = 402 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 62/174 (35%), Gaps = 6/174 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 D L + + AG+ + D+V ++ Q+ + +RS V E G+S+S+S + Sbjct: 62 SKDMVIFLRQMTTLLTAGISLVDSVRLLGEQTPNKALRSALVEVEEDLRQGISMSQSTEK 121 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + GGNL E L+ + +K KV + Sbjct: 122 HRKVFQP-----LVVNMIRAGEAGGNLDEIFERLAVYYEKQNRIKQKVISALAYPATLGV 176 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 I + + +V + ++ L + A + + + L++ Sbjct: 177 IAIGVVMFLLAVVVPSFADMFAGFDSELPWITLFVLNAGDWMQSWVWLILLLTV 230 >gi|257139286|ref|ZP_05587548.1| hypothetical protein BthaA_08789 [Burkholderia thailandensis E264] Length = 301 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 71/151 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++KR + + P+ LD IVR V G V A + + P+R V Sbjct: 151 LASRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTDAPLRGCLDHVSRMLR 210 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + ++E +V+ + + GG L ++ +RD + + ++ Sbjct: 211 SGVEIDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 270 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 A+S E + SAW++G+LP + + V T+P Y Sbjct: 271 AMSAETRLSAWVLGALPVGIGSFVIATNPKY 301 >gi|91794691|ref|YP_564342.1| type II secretion system protein [Shewanella denitrificans OS217] gi|91716693|gb|ABE56619.1| type II secretion system protein [Shewanella denitrificans OS217] Length = 405 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 19/165 (11%), Positives = 52/165 (31%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRM 72 D+ + R+G+P+ A+A + + V E ++E G LS ++++ Sbjct: 64 DELQIFTRQMYSLTRSGIPILRAIAGLSESTHSKVMKEALEDILEQLTAGRPLSSAMNQY 123 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G L + LS + + + ++++ Sbjct: 124 PK-----VFDALFVSMIHVGENTGKLEDVFIQLSSYIEREQETRRRIKSAMRYPMFVLGA 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 I ++ +V + + L + + + Sbjct: 179 IVIAMVILNIMVIPKFADMFSRFGAELPWATKLLIGTSSAFVNYW 223 Score = 40.9 bits (94), Expect = 0.086, Method: Composition-based stats. Identities = 10/132 (7%), Positives = 35/132 (26%), Gaps = 5/132 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + AG+P++ A++++ + + + S + Sbjct: 269 LARYCRSFSMMLSAGVPMTQALSLVADAVDNAYMH-----DAIVGMRRGIESGESMLRVS 323 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 Q + + + G + + L + + + K +E ++ Sbjct: 324 NQSQLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGFVACI 383 Query: 136 LPFCVSTLVYFT 147 + + Sbjct: 384 VLILALGIYLPM 395 >gi|256832577|ref|YP_003161304.1| type II secretion system protein [Jonesia denitrificans DSM 20603] gi|256686108|gb|ACV09001.1| type II secretion system protein [Jonesia denitrificans DSM 20603] Length = 410 Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 24/182 (13%), Positives = 56/182 (30%), Gaps = 18/182 (9%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72 + + + AGL + A+ ++ Q+ + V V G SLS ++++ Sbjct: 71 KEIAIMSRQLATMINAGLSLLRALTILTEQTENKVLQGILGTVRSDVETGGSLSSALAKH 130 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P + + GG L + L ++++ D +K K+++ I Sbjct: 131 PKVFPP-----LMINMVRAGETGGFLDKTLLSIAKNFEDEVKLKGKIKSAMTYPVVVLVI 185 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRG------------HMLLGVAAAFMLIGIMVMR 180 + + G L + M + + G + Sbjct: 186 AILASAGMLIFIVPVFAGMFATLGGELPFVTQILVTMSDFLKMAIWPILLLVFAGFIWWN 245 Query: 181 LM 182 + Sbjct: 246 RI 247 Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 15/133 (11%), Positives = 35/133 (26%), Gaps = 5/133 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + AG+P+ A+ ++ S + V + S+ + Sbjct: 279 FTRNLGAMLSAGVPILQALEIVGETSGNIVVE-----HAANDVIDSVRRGRALTAPLSEN 333 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L + L ++ + +E I G + Sbjct: 334 PVFPPMVVQMMAVGEDTGALDDMLEKIAEFYDAEVEATTEQLTSLIEPLMILVIGGIVGG 393 Query: 139 CVSTLVYFTSPGY 151 V L + Sbjct: 394 MVIALYMPIFSIF 406 >gi|294140782|ref|YP_003556760.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12] gi|293327251|dbj|BAJ01982.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12] Length = 322 Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 68/158 (43%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +++L +R + FP+ALD++V AGL + A+ + + S + SE V Sbjct: 160 LQNLASRRMKELRAGFPDALDLLVVCCEAGLGLLAALQRVANELAISHVSLASELDLVCS 219 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL++ ++ L ++ ++ IS +LG ++ L S RD++ +A Sbjct: 220 KVRAGLTIKVALQEFTDRTGLDDIKGLNSAISQSIRLGTGIAATLRVFSDEYRDKRLQEA 279 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + QA + K ++ + + P + V+ Sbjct: 280 EEQAAKLAVKMIFPMMLGIWPS--FFIVAVGPAVLKVM 315 >gi|220918108|ref|YP_002493412.1| type II secretion system protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219955962|gb|ACL66346.1| type II secretion system protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 319 Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 69/166 (41%), Gaps = 4/166 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + I R P+ALD++V V AGL + +V + + + +E R Sbjct: 154 LTSRISSRQLTLERGLPDALDLLVTCVEAGLGLDASVQRVSEEIHRAWPQLATELRTTFL 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ E+ R+ ++++ S ++ G +++ AL S +R R+ +A Sbjct: 214 EVKAGIPRIEAFRRLATRTGVKDLKSLSATLAQTEIFGTSVALALRVQSDGMRVRRMHRA 273 Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162 + +A + K + I+ LP ++ ++ G M L+ G Sbjct: 274 EEKAAYVSVKMTLPLILCILPSLLAVIMGPAIIGIMRALMPALGGK 319 >gi|50119739|ref|YP_048906.1| putative type IV pilus protein [Pectobacterium atrosepticum SCRI1043] gi|49610265|emb|CAG73708.1| putative type IV pilus protein [Pectobacterium atrosepticum SCRI1043] Length = 319 Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +K R K P+ALD++V AGLP+ + V+ + SS + E Sbjct: 159 LKWRAASRGEKLARAVPDALDLMVVCAEAGLPIGRVLQVVSKELGLSSPEMADELHYTAA 218 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + ++ + + E+ + + G LS+AL ++ R + Sbjct: 219 ELQILSDRTLAMKHLAERTRVSEIESMVATLIQAERYGTPLSQALRTIADESRKTLILGL 278 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + +A + A+ S ++ + + ++ Sbjct: 279 EEKAGKLPAQLSVPLMALILPPIIAIM 305 >gi|56421162|ref|YP_148480.1| hypothetical protein GK2627 [Geobacillus kaustophilus HTA426] gi|56381004|dbj|BAD76912.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 403 Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 24/174 (13%), Positives = 50/174 (28%), Gaps = 4/174 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 F L VRAG+ + D++ ++ Q+ R ++ L + Sbjct: 63 QHFVVFLRQFATLVRAGVTIVDSIHILAEQTE---SKALARALDDMEQHL-REGNPLSAA 118 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G L E L L+ + K+ + A A I Sbjct: 119 AAKHPRIFPPLFVNMVRAGEASGTLDETLDRLADHFEKVHRTRQKIVSALAYPVAVAIIA 178 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 ++ + V T + + A+ + M ++ V Sbjct: 179 VAVVIFLLVSVVPTFVDMFADFHAELPAITKFVLKASAFMQHYWWMITLLAIGV 232 >gi|320116991|ref|YP_004187150.1| type II secretion system F domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|319930082|gb|ADV80767.1| Type II secretion system F domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 304 Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 79/183 (43%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L +++ K + F + + ++ ++ + A ++ +P++ RV+ Sbjct: 118 LDYLGRRKIRKTEEQFRDFVKMLGAYLKMVPSFAGAFIKAAEEAENPLKEHTDRVLRRFQ 177 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG L E++ + + + + I ++ +LS ++ L +R M ++ Sbjct: 178 LGEDLEEALKEF-KNIESTYIKVWIDSIIFAVRMKSDLSRVCERTAKKLYERIKMSNRIA 236 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVM 179 A++++AK+ + + + SP ++ + P G +++ AA I + ++ Sbjct: 237 AMTVQAKSLMVSLVGIMAFMIVSTVSVSPDFIRT-FSSPIGKLVIAYAALSYFISTLYIL 295 Query: 180 RLM 182 + + Sbjct: 296 KRI 298 >gi|258516391|ref|YP_003192613.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM 771] gi|257780096|gb|ACV63990.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM 771] Length = 403 Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 70/185 (37%), Gaps = 7/185 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 +++ ++KR + + + AG+P++ + + QS +P + + Sbjct: 50 LRNALQKRGKVKIGQLSFFSRQLSAMLTAGIPLTRGLYTLSEQSENPVLARAAGEMAHAV 109 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G+S S ++S S + ++GG + E L LS L K ++ + Sbjct: 110 EGGMSFSAAMSA-----HQDIFSKMYVDMIKAGEVGGMMEEMLNRLSMQLEREKILRDNI 164 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP-RGHMLLGVAAAFMLIGIMV 178 ++ + G + C+ + G++ + P ++ G + + ++ Sbjct: 165 KSATFYPIIIIMFAGLVILCMMFFIVPIFEGFIPQGVAPPLPTRIIFGFSHSLRSYSLLY 224 Query: 179 MRLMI 183 M +I Sbjct: 225 MLGII 229 >gi|167036497|ref|YP_001664075.1| type II secretion system protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167038602|ref|YP_001666180.1| type II secretion system protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039381|ref|YP_001662366.1| type II secretion system protein [Thermoanaerobacter sp. X514] gi|307725293|ref|YP_003905044.1| type II secretion system F domain-containing protein [Thermoanaerobacter sp. X513] gi|320114925|ref|YP_004185084.1| type II secretion system F domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166853621|gb|ABY92030.1| type II secretion system protein [Thermoanaerobacter sp. X514] gi|166855331|gb|ABY93739.1| type II secretion system protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|166857436|gb|ABY95844.1| type II secretion system protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|307582354|gb|ADN55753.1| Type II secretion system F domain protein [Thermoanaerobacter sp. X513] gi|319928016|gb|ADV78701.1| Type II secretion system F domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 301 Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 79/183 (43%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L +++ K + F + + ++ ++ + A ++ +P++ RV+ Sbjct: 115 LDYLGRRKIRKTEEQFRDFVKMLGAYLKMVPSFAGAFIKAAEEAENPLKEHTDRVLRRFQ 174 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG L E++ + + + + I ++ +LS ++ L +R M ++ Sbjct: 175 LGEDLEEALKEF-KNIESTYIKVWIDSIIFAVRMKSDLSRVCERTAKKLYERIKMSNRIA 233 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVM 179 A++++AK+ + + + SP ++ + P G +++ AA I + ++ Sbjct: 234 AMTVQAKSLMVSLVGIMAFMIVSTVSVSPDFIRT-FSSPIGKLVIAYAALSYFISTLYIL 292 Query: 180 RLM 182 + + Sbjct: 293 KRI 295 >gi|330987706|gb|EGH85809.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. lachrymans str. M301315] Length = 405 Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 18/180 (10%), Positives = 50/180 (27%), Gaps = 18/180 (10%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73 D + ++AG+P+ + +I + +P + + G S + ++ + Sbjct: 67 DIAFFSRQMATMMKAGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRQKP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G L L ++ + +KAK++ A + Sbjct: 127 E-----YFDDLFCNLVDAGEQAGALESLLDRVASYKEKTEKLKAKIKKAMTYPIAVLIVA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA------------AFMLIGIMVMRL 181 + + V + L+ + +G + + Sbjct: 182 IIVSGILLIKVVPQFQSVFAGFGAELPAFTLMVIGLSDIVQKWWLAIVGLFFVGAFLFKR 241 Score = 38.6 bits (88), Expect = 0.37, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 42/129 (32%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG+P+ +A+ + G + + V +V + G+ L+ S+ Sbjct: 277 RTLATTFAAGVPLVEALDSVAGATGNVVFRDAVNKVKQDVSTGMQLNFSMRSTG------ 330 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + ++ + G L L ++ D + ME A + + Sbjct: 331 VFPSLAIQMTAIGEESGALDNMLDKVATYYEDEVDNMVDNLTSLMEPMIMAVLGVIVGGL 390 Query: 140 VSTLVYFTS 148 V + Sbjct: 391 VIAMYLPIF 399 >gi|289674983|ref|ZP_06495873.1| type II secretion system protein [Pseudomonas syringae pv. syringae FF5] Length = 405 Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 21/188 (11%), Positives = 52/188 (27%), Gaps = 19/188 (10%) Query: 8 RTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSL 65 R K D + ++AG+P+ + +I + +P + + G S Sbjct: 59 RGKKIKPLDIAFFSRQMATMMKAGVPLLQSFDIISEGAENPNMQTLVNSLKQEVSAGNSF 118 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + ++ + + + G L L ++ + +KAK++ Sbjct: 119 ATALRQKPE-----YFDDLYCNLVDAGEQAGALESLLDRVASYKEKTEKLKAKIKKAMTY 173 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA------------AAFML 173 A + + + V + L+ V + Sbjct: 174 PTAVLIVAAIVTGILLIKVVPQFQSVFSSFGAALPTFTLMVVGLSEFVQQWWLGIISVFF 233 Query: 174 IGIMVMRL 181 G + + Sbjct: 234 AGFFIFKR 241 Score = 34.7 bits (78), Expect = 6.4, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 41/129 (31%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG+P+ +A+ + G + + V +V + G+ L+ S+ Sbjct: 277 RTLATTFAAGVPLVEALDSVAGATGNVVFRNAVNKVKQDVSTGMQLNFSMRSTG------ 330 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + ++ + G L L ++ D + ME + + Sbjct: 331 VFPSLAIQMTAIGEESGALDTMLDKVATYYEDEVDNMVDSLTSLMEPMIMVVLGVVVGGL 390 Query: 140 VSTLVYFTS 148 V + Sbjct: 391 VLAMYLPIF 399 >gi|14590540|ref|NP_142608.1| hypothetical protein PH0653 [Pyrococcus horikoshii OT3] gi|3257061|dbj|BAA29744.1| 358aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 358 Score = 72.5 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 74/182 (40%), Gaps = 2/182 (1%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K + K+R + P L + + AG+ +++A+ + V EF V++ H Sbjct: 172 KSVWKRRVEEVEKALPYVLRHMASLLNAGIGLAEAMVSVSKADYGVVSEEFAMVVQEMHK 231 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S +++++ M VS I + GGNL++ L ++ +K Sbjct: 232 GSSFEDALTKFEEKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIKLMDYV 291 Query: 122 LSMEAKASAWIIG-SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + ++ + + +V +M L+ + G +++ + F + +++ Sbjct: 292 QKINGISFVYMFMTVVMPTLLIVVILAGSIFMKRLVINLSGMIVIFL-LGFPTLSFIIIM 350 Query: 181 LM 182 ++ Sbjct: 351 MI 352 >gi|153834029|ref|ZP_01986696.1| Flp pilus assembly protein TadC [Vibrio harveyi HY01] gi|148869584|gb|EDL68574.1| Flp pilus assembly protein TadC [Vibrio harveyi HY01] Length = 315 Score = 72.5 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 64/148 (43%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ ++ KR P+ LD++V +GL + A+ + + S + E V Sbjct: 155 LRRMVNKRQKAIRAGIPDMLDLLVVCTESGLGFNAALRRVADELVISHPELADEIDTVCN 214 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + E++ +V L+E+ +++S S++GG+L +L + RD++ A Sbjct: 215 KIQAGKPMPEALRELVVRTGLEEIMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAA 274 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + A + K ++ + C + Sbjct: 275 EEVAAKIPVKMMFPMVLFIWPCFFIVAV 302 >gi|88859015|ref|ZP_01133656.1| type IV pilus biogenesis protein PilC [Pseudoalteromonas tunicata D2] gi|88819241|gb|EAR29055.1| type IV pilus biogenesis protein PilC [Pseudoalteromonas tunicata D2] Length = 412 Score = 72.5 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 18/167 (10%), Positives = 49/167 (29%), Gaps = 6/167 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 D I + AG+P+ A+ +I S ++ ++ + G S+++ + Sbjct: 71 KDICVLTRQIATMLMAGVPLIQAIDMIGSGSEKKSLQRLITKIADEVKAGNPFSDALRKH 130 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L ++ + +K+K++ + A I Sbjct: 131 PIL-----FDDLYCDLVASGEQSGALDNIFDRVATYKEKSEALKSKIKKAMIYPIAVLSI 185 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + V + L + + + + Sbjct: 186 AFVVTTILLIFVVPQFQSVFAGFGAELPAFTLFVIGISEFMQNYWWL 232 >gi|261418357|ref|YP_003252039.1| type II secretion system protein F [Geobacillus sp. Y412MC61] gi|319767684|ref|YP_004133185.1| type II secretion system F domain protein [Geobacillus sp. Y412MC52] gi|261374814|gb|ACX77557.1| Type II secretion system F domain protein [Geobacillus sp. Y412MC61] gi|317112550|gb|ADU95042.1| Type II secretion system F domain protein [Geobacillus sp. Y412MC52] Length = 403 Score = 72.5 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 53/166 (31%), Gaps = 6/166 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 F L VRAG+ + D++ ++ Q+ P+ + ++ G LS + + Sbjct: 63 QHFVIFLRQFATLVRAGVTIVDSIRILAEQTESKPLAKTLLDIEQSLRSGNPLSAAAANH 122 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R P + + G L E L L+ + K+ + A A I Sbjct: 123 PRIFPP-----LFVNMVRAGEASGTLDETLDRLADHFEKMHRTRQKIASALAYPIAVAII 177 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 ++ + V T + + A+ ++ Sbjct: 178 ATAVVIFLLVAVVPTFVEMFAEFHAELPAITKFVLKASSVMQRYWW 223 >gi|297529209|ref|YP_003670484.1| type II secretion system F domain protein [Geobacillus sp. C56-T3] gi|297252461|gb|ADI25907.1| Type II secretion system F domain protein [Geobacillus sp. C56-T3] Length = 403 Score = 72.5 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 53/166 (31%), Gaps = 6/166 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 F L VRAG+ + D++ ++ Q+ P+ + ++ G LS + + Sbjct: 63 QHFVIFLRQFATLVRAGVTIVDSIRILAEQTESKPLAKTLLDIEQSLRSGNPLSAAAANH 122 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R P + + G L E L L+ + K+ + A A I Sbjct: 123 PRIFPP-----LFVNMVRAGEASGTLDETLDRLADHFEKMHRTRQKIASALAYPIAVAII 177 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 ++ + V T + + A+ ++ Sbjct: 178 ATAVVIFLLVAVVPTFVEMFAEFHAELPAITKFVLKASSVMQRYWW 223 >gi|323495642|ref|ZP_08100713.1| type II secretion system protein F [Vibrio sinaloensis DSM 21326] gi|323319277|gb|EGA72217.1| type II secretion system protein F [Vibrio sinaloensis DSM 21326] Length = 296 Score = 72.5 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 64/157 (40%), Gaps = 4/157 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 + K R A+ P LD++ V+ G+ + A+ + + + + + Sbjct: 139 LDSRGKARIARISAQLPYLLDLLAVCVQTGMTIESAMNYLSKEMIGFDKELAGLLKKTNE 198 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + + +++ + +P E+ F + Q G ++ L L+ +RD + + + Sbjct: 199 RSRLVGMQKALDELYEDIPSSEMRSFVMTLKQSLQYGSSIYGVLTTLAGDIRDVQMLGLE 258 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + AK S +I + + L+ PG + ++ Sbjct: 259 EKIGKLAAKMSVPLILFIMIPIVILIAA--PGILRMM 293 >gi|257388762|ref|YP_003178535.1| type II secretion system protein [Halomicrobium mukohataei DSM 12286] gi|257171069|gb|ACV48828.1| type II secretion system protein [Halomicrobium mukohataei DSM 12286] Length = 807 Score = 72.5 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 20/143 (13%), Positives = 54/143 (37%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L +R + P L+ + AG+ V +++ + G + E R+ + Sbjct: 465 RELYTRRIRRIEASTPELLERLASLNEAGMTVVESLERVRGTDVGALSEEVDRIWADVTM 524 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G ++ ++++R R + +S T++ + G + L + R ++ + + Sbjct: 525 GANVEDALTRFGRRIRTTSMSRVVTLLINAMRSSGKMGPILRIAADQARSDYRLRRQRRQ 584 Query: 122 LSMEAKASAWIIGSLPFCVSTLV 144 + +I + + V Sbjct: 585 EMLTYLVVIYISFLVFLVIIASV 607 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 21/182 (11%), Positives = 53/182 (29%), Gaps = 5/182 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQ 59 + R + L + R G+ A+ + + E + Sbjct: 158 RSRAAVRQRAIDEGQGRTLAFLYALSRGGVSFPAALRTLSDNREIYGASAEEVSVAVRQM 217 Query: 60 HLGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L + ++ M P ++ F+ ++ Q G +LS L +D + + Sbjct: 218 DLFGQDMITAVRGMAGRTPSEDFQTFAENLASVLQSGRSLSTFLREQYERTKDESERRQE 277 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + A A++ + + + + L + ++G + V Sbjct: 278 EILEHLATVAEAYVTVLVAAVLFFITILLV--FGLTLADTLVFIQMVGYLMIPLANAGFV 335 Query: 179 MR 180 + Sbjct: 336 LY 337 >gi|332139659|ref|YP_004425397.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshG (pilus type IV) [Alteromonas macleodii str. 'Deep ecotype'] gi|327549681|gb|AEA96399.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshG (pilus type IV) [Alteromonas macleodii str. 'Deep ecotype'] Length = 411 Score = 72.5 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 19/173 (10%), Positives = 57/173 (32%), Gaps = 6/173 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRM 72 D+ + ++AG+P+ A+ + +S E + + + G SLS ++ + Sbjct: 70 DEMIIFSRQMYSLLKAGIPIIRAIKGLSENASHKRFQEILKDIADQLEQGRSLSSAMVKY 129 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + V + G L + L+ + + ++Q+ Sbjct: 130 EK-----VFTRLTISVVVVGENTGKLDDVFLQLALYFEREQETRKRIQSALRYPTFVLIA 184 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + F ++ V + + + + + + L++ Sbjct: 185 LAIAMFILNLFVVPVFTQMFERFDTELPIMTRVLIGTSNFFVNYWWLILIVLI 237 Score = 40.1 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 11/127 (8%), Positives = 35/127 (27%), Gaps = 5/127 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 +RAG+P++ +++ + + + + + S + + Sbjct: 280 RSFSMILRAGVPLTAGLSLTADAVDNAHMQMRIKTMRQ-----GIEKGDSLLRVSKNSEL 334 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 S + + G L + L + + K +E ++ + Sbjct: 335 FSTLVLQMIAVGEETGRLEQLLEESADYYEREVDFDLKSLTAKIEPILIGFVAVMVLILA 394 Query: 141 STLVYFT 147 + Sbjct: 395 LGIFTPM 401 >gi|224369331|ref|YP_002603495.1| PilC [Desulfobacterium autotrophicum HRM2] gi|223692048|gb|ACN15331.1| PilC [Desulfobacterium autotrophicum HRM2] Length = 402 Score = 72.5 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 24/177 (13%), Positives = 57/177 (32%), Gaps = 13/177 (7%) Query: 19 ALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AGLP+ + ++ Q + + +++ E+ G + ++++++ Sbjct: 68 FSRQFSTMIDAGLPLLQCLDILHAQQENVTFKKILKKIKESVESGETFADALAKFPDI-- 125 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + T + + GG L L LS + +K +V+ + + + Sbjct: 126 ---FNELFTNMVAAGEAGGILDIILRRLSAYMEKMAKLKKQVKGAMTYPAITLAVAVIVV 182 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-------AFMLIGIMVMRLMINFDV 187 + V + LL V +IG ++ I V Sbjct: 183 GIILVFVIPVFAEMFADFGSTLPAPTLLVVFLSEFVINNILYIIGAFIVVTFITRRV 239 Score = 42.8 bits (99), Expect = 0.022, Method: Composition-based stats. Identities = 13/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+ + +A+ ++ + EF Q + S + + Sbjct: 271 FTRTMGTMMSSGVSILEALDIVGKTA-GNKTVEFAIHDVKQGISEGRSMADPLL----ES 325 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L L ++ D + K +E ++ + Sbjct: 326 GVFPSMVCSMIAVGESTGALDNMLGKIADFYDDEVDQAVKTLTDMIEPFMLVFLGVVIGG 385 Query: 139 CVSTLVYFTS 148 V + Sbjct: 386 LVVAMYLPIF 395 >gi|156744077|ref|YP_001434206.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] gi|156235405|gb|ABU60188.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] Length = 309 Score = 72.5 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 69/158 (43%), Gaps = 1/158 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I +R + L+ P+ALD++ + AGL +A+ I + ++ + EF RV+ Sbjct: 151 LSRRIGQRQTELLNALPDALDLLAIATAAGLSFENAIQEITSKWTNELAREFSRVLRDMS 210 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ ++++ M + +++ F + I LG ++ L + +R R+ +A+ + Sbjct: 211 MGVPRRQALTDMAERTGVPDIASFVSAIKQAEALGVSIGRVLTVQAEEMRTRRRQRAQER 270 Query: 121 ALSMEAKASAW-IIGSLPFCVSTLVYFTSPGYMNVLIN 157 A K + P + L+ P + Sbjct: 271 ANQAPVKMMFPLVFLIFPAIFAVLLGPAVPQLLEAFGG 308 >gi|163801672|ref|ZP_02195570.1| hypothetical Flp pilus assembly protein TadC [Vibrio sp. AND4] gi|159174589|gb|EDP59391.1| hypothetical Flp pilus assembly protein TadC [Vibrio sp. AND4] Length = 280 Score = 72.5 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 67/159 (42%), Gaps = 4/159 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 ++ K K P LD++ V+ G+ + A+ + + ++ ++ Sbjct: 123 LQMRRKMLIRKTSAQLPYLLDMMSVCVQTGMTIEAALVYLGKELAEFDSDLCYQIKRTSD 182 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L ++++ + +P V F I Q G ++++ L++L+ +R + + + Sbjct: 183 SAKIQGLEKALTDLSERIPTPPVRSFVLTIIQNLQHGTSVAQILSDLAEDMRKMQILTVE 242 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + + AK S +I + F + L+ +PG M + N Sbjct: 243 EKVGKLSAKMSLPLIIFIMFPIVILI--LAPGIMQMNFN 279 >gi|21673275|ref|NP_661340.1| TadC protein [Chlorobium tepidum TLS] gi|21646364|gb|AAM71682.1| TadC protein [Chlorobium tepidum TLS] Length = 312 Score = 72.5 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 63/148 (42%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 M + KKR + + P+ ++++V +G+ + A+A I + + EF Sbjct: 151 MDFITKKRVERMRNSLPDMIELMVVCTESGMSIDAAIARISQEMARTHPDLAQEFYLAGL 210 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+ M L E+ +++ + G +++E+L S ++R ++ +A Sbjct: 211 EMRAGATRIDSLRNMALRTSLDELHDLVSMLIQAEKFGTSMAESLRVQSEVMRTKRTQRA 270 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + A + K + + + ++ Sbjct: 271 EELAAKIPVKLVLPLGLFIFPTLLIVML 298 >gi|127511576|ref|YP_001092773.1| type II secretion system protein [Shewanella loihica PV-4] gi|126636871|gb|ABO22514.1| type II secretion system protein [Shewanella loihica PV-4] Length = 287 Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 3/158 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + L KKR + P LD + S+ AGL ++ A++ V + P+R EF +VI Sbjct: 131 LNDLRKKRQGLIVKSLPVYLDYLTMSIEAGLNMTGALSQAVERGPAGPLRIEFEKVIRDM 190 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G+S +++ M + + EV+ + ++ + G +L + L S R + +A+ Sbjct: 191 RAGMSRAQAFRNMADRVQVTEVNSLVSALAQAERTGASLGQTLRIQSDQRRIERFQRAEK 250 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 +AL K +I + ++ F P M + Sbjct: 251 KALEAPVKLVFPLIVFIFPVTFMILAF--PIAMKFMYE 286 >gi|148657456|ref|YP_001277661.1| type II secretion system protein [Roseiflexus sp. RS-1] gi|148569566|gb|ABQ91711.1| type II secretion system protein [Roseiflexus sp. RS-1] Length = 309 Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 68/158 (43%), Gaps = 1/158 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R + L+ P+ALD++ + AGL A+ I + ++ + EF RV+ Sbjct: 151 LSRRIRQRQTELLNALPDALDLLAIASAAGLSFESAMQEITSKWTNELAREFSRVLRDMS 210 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ ++++ M + +++ F + + LG ++ L + +R R+ +A+ + Sbjct: 211 MGVPRRQALTDMAERTGVSDIASFVSAVKQAEALGISIGRVLTVQADEMRTRRRQRAQER 270 Query: 121 ALSMEA-KASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 A + P + L+ P + Sbjct: 271 ANQAPVKMMFPLVFLIFPAIFAVLLGPAVPQLLEAFGG 308 >gi|167006300|ref|YP_001661523.1| integral membrane protein [Streptomyces sp. HK1] gi|166162382|gb|ABY83503.1| integral membrane protein [Streptomyces sp. HK1] Length = 304 Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 19/184 (10%), Positives = 57/184 (30%), Gaps = 4/184 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +R + L+ + +AG+ + + + P+ R + + G+ Sbjct: 104 AASQRIERLE-ALAQWLNHLAGVHQAGISLPQTIRASAKAAPGPIAPNVRALADRLRSGM 162 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAKVQAL 122 ++ + + + + LS+AL L+ + + ++A Sbjct: 163 EAEDAFAHFADELADGVADHVVLLFQSHAVYKGPGLSDALEALAVTIHQQAADARDIEAD 222 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + S+ ++ +V + P G ++L + + +R + Sbjct: 223 RAKVRKSSRMVSM--VICLVVVGCMLNDAWSGWYKTPLGQLVLALLGGAFAWTLTWLRRI 280 Query: 183 INFD 186 Sbjct: 281 ARTK 284 >gi|310822671|ref|YP_003955029.1| type II secretion system protein f domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|309395743|gb|ADO73202.1| Type II secretion system protein F domain protein [Stigmatella aurantiaca DW4/3-1] Length = 296 Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 70/162 (43%), Gaps = 3/162 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQ 59 + +K+R P LD++ SV AGL + A++ +V + S P++ E V++ Sbjct: 137 VNDQVKRRHLAISRALPYNLDLLTLSVEAGLDFTAALSKVVEKGKSGPLKEEMSIVLKQL 196 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 +G + E++ M+ + L ++ F T + ++G +L + L S +R + +A+ Sbjct: 197 KMGKTREEALKAMILRVDLPSLTTFVTALIQADKMGTSLGKVLRIQSTQMRIDRTQRAEK 256 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 A K +I + V + P + + G Sbjct: 257 LAGEAPVKMLFPLIACIFPTVF--MVLFGPIVFQFMFGNVGG 296 >gi|227114881|ref|ZP_03828537.1| putative type IV pilus protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 319 Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +K R K P+ALD++V AGLP+ + V+ + SS + E Sbjct: 159 LKWRAASRGEKLACAVPDALDLMVVCAEAGLPIGRVLQVVSKELGLSSPEMADELHYTAA 218 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + ++ + + E+ + + G LS+AL ++ R + Sbjct: 219 ELQILSDRTLAMKHLAERTRVSEIESMVATLIQAERYGTPLSQALRTIADESRKTLILSL 278 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + +A + A+ S ++ + + ++ Sbjct: 279 EEKAGKLPAQLSVPLMALILPPIIAIM 305 >gi|323702118|ref|ZP_08113786.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM 574] gi|323533000|gb|EGB22871.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM 574] Length = 310 Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 71/155 (45%), Gaps = 2/155 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R + P+ALD++ SV AGL A+ + QS+ + EF +++ H Sbjct: 153 LNARIRQRKNQVEKALPDALDLLTVSVEAGLGFDCALMKVAEQSNSVLADEFVLMMQECH 212 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G E++ M + + ++S F I + LG ++ L S+ +R ++ + + Sbjct: 213 MGKPRREALRDMADRVDVDDLSTFCGSIILADTLGISIGNILRTQSQQIRQKRRQRTEEL 272 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A+ K ++ + + ++ P + ++ Sbjct: 273 AMKAPIKMLFPMVLFIFPAIFVIL--LGPAALQIM 305 >gi|285017460|ref|YP_003375171.1| fimbrial assembly protein [Xanthomonas albilineans GPE PC73] gi|283472678|emb|CBA15183.1| probable fimbrial assembly protein [Xanthomonas albilineans] Length = 423 Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 22/173 (12%), Positives = 55/173 (31%), Gaps = 6/173 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + +++G+P+ ++ +I G + ++ ++ G SL E+ISR Sbjct: 83 KDIAFFSRQMATMMKSGVPIVGSLEIIASGHKNPRMKKMVEQIRTDIEGGSSLYEAISRH 142 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L ++ + + +K K++ + Sbjct: 143 PVQ-----FDELYRNLVKAGEGAGVLETVLETVATYKENIEALKGKIKKALFYPAMVMAV 197 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + V + V A+ ++ M L++ Sbjct: 198 AVIVSCILLVWVVPQFEDVFKGFGAQLPAFTQMIVTASRFMVAYWWMMLIVVI 250 Score = 38.6 bits (88), Expect = 0.46, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 38/130 (29%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + RAG+P+ +A+ ++ G + + V + + + P Sbjct: 292 FSRTLAVTFRAGVPLVEALDIVAGATGNSVYEKSVLRMRDDVAVGYPVNVAMKQTNLFPH 351 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 ++ + G L L ++ N + ME +I + Sbjct: 352 -----MVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLMEPLIMVFIGTIVGG 406 Query: 139 CVSTLVYFTS 148 V + Sbjct: 407 MVIGMYLPIF 416 >gi|76802097|ref|YP_327105.1| transmembrane protein (type II secretion system proteins TadC) [Natronomonas pharaonis DSM 2160] gi|76557962|emb|CAI49546.1| transmembrane protein (homolog 3 to type II secretion system proteins TadC) [Natronomonas pharaonis DSM 2160] Length = 672 Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 58/134 (43%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R K + FP+ L+I+ + + G+P+ +A+ ++ S + E R V Sbjct: 443 LYERERRREQKINERFPDTLNILSSANQMGIPLVEALNLVSRWSEGVLGKELRMVRNDIR 502 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + S+ + + + +V+ +++ + +LS+ ++ + R+R ++ K + Sbjct: 503 WNHDVERSLLKFANRLDVPQVTRTMKLLAKGNHASSDLSKIISIAAEDTRNRYEIERKRR 562 Query: 121 ALSMEAKASAWIIG 134 A I Sbjct: 563 NEMNAYMAIVIIGF 576 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 18/180 (10%), Positives = 52/180 (28%), Gaps = 6/180 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQH 60 R P+A+ + G+ + + + + V EF ++ Sbjct: 144 FRKDTRKRNIDVMLPHAIVYMYALSHGGMNTFEVMEELAEADEVYGAVSDEFDMIVRDVE 203 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 L L ++ P + + F G + S L + + + + + Sbjct: 204 LFGNDLFAALRDARNLTPSENLEQFLDDTISVVDSGSDFSAFLEDEAETYMEEAREEQEN 263 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ + +I+ + + +V + +L + L ++ + Sbjct: 264 FLSTLSILSEIYIVVFVAAPLFVIVMLL---MVTLLGGGAIAMAQFIIYLCLPLAMLLFI 320 >gi|327479617|gb|AEA82927.1| type 4 pilus biogenesis protein PilC [Pseudomonas stutzeri DSM 4166] Length = 405 Score = 72.1 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 18/166 (10%), Positives = 49/166 (29%), Gaps = 6/166 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + ++AG+P+ + +I +R + + G S + ++ + Sbjct: 67 DIALFTRQMATMMKAGVPLLQSFDIIGEGFDNPNMRKLVDDLKQEVAAGNSFATALRKKP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G L L ++ + +KAK++ A + Sbjct: 127 Q-----YFDDLYCNLVDSGEQSGALETLLDRVATYKEKTEALKAKIKKAMNYPIAVLMVA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + V + L+ + + L + Sbjct: 182 IIVSAILLIKVVPQFQEVFANFGAELPAFTLMVIGLSEALQEWWFI 227 Score = 40.1 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + AG+P+ DA+ + G + + V T + +S + Sbjct: 275 FARTLSTTFAAGVPLVDALDSVAGATGNVVFR-----SATMKVKNDVSTGMQLNFSMRTT 329 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + ++ + G+L E LA ++ D + ME A + + Sbjct: 330 GTFPTMAVQMTAIGEESGSLDEMLAKVATFYEDEVDNMVDSLTSLMEPMIMAVLGVLVGG 389 Query: 139 CVSTLVYFTS 148 + + Sbjct: 390 LIIAMYLPIF 399 >gi|227326306|ref|ZP_03830330.1| putative type IV pilus protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 319 Score = 72.1 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +K R K P+ALD++V AGLP+ + V+ + SS + E Sbjct: 159 LKWRAASRGEKLARAVPDALDLMVVCAEAGLPIGRVLQVVSKELGLSSPEMADELHYTAA 218 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + ++ + + E+ + + G LS+AL ++ R + Sbjct: 219 ELQILSDRTLAMKHLAERTRVSEIESMVATLIQAERYGTPLSQALRTIADESRKTLILGL 278 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + +A + A+ S ++ + + ++ Sbjct: 279 EEKAGKLPAQLSVPLMALILPPIIAIM 305 >gi|269960464|ref|ZP_06174836.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834541|gb|EEZ88628.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 314 Score = 72.1 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 63/148 (42%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ +I KR P+ LD++V +GL + A+ + + S + E V Sbjct: 155 LRRMIDKRQRAIRAGVPDMLDLLVVCTESGLGFNAALRRVADELVISHPELADEVDTVCN 214 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + E++ +V L E+ +++S S++GG+L +L + RD++ A Sbjct: 215 KIQAGKPMPEALRELVYRTGLDELMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAA 274 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + A + K ++ + C + Sbjct: 275 EEMAAKIPVKMMFPMVLFIWPCFFIVAI 302 >gi|289209345|ref|YP_003461411.1| type II secretion system F domain protein [Thioalkalivibrio sp. K90mix] gi|288944976|gb|ADC72675.1| Type II secretion system F domain protein [Thioalkalivibrio sp. K90mix] Length = 403 Score = 72.1 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 18/181 (9%), Positives = 55/181 (30%), Gaps = 8/181 (4%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66 + D L + +++G+P+ A ++ + +R ++ G + + Sbjct: 58 KKKIVPADIAYFLRQMTTMLQSGVPLVQAFEIVGRGNEKPAMRDLVLKLKADVEGGETFA 117 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++++ + + + G L L ++ + +KAK++ Sbjct: 118 AALAKQPK-----YFDDLVVNLVEAGEQAGTLETLLDKVATYKEKTEALKAKIRKAMFYP 172 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 A + + + V D + V + + + ++ Sbjct: 173 AAVVVVAIVVTAILLIYVVPQFESLFQGFGADLPVFTRMVVDLSGFVQSWWWL--ILAIM 230 Query: 187 V 187 V Sbjct: 231 V 231 Score = 40.9 bits (94), Expect = 0.086, Method: Composition-based stats. Identities = 19/142 (13%), Positives = 41/142 (28%), Gaps = 11/142 (7%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLS 66 R A + AG+P+ DA+ + G + + + E R+ + G L Sbjct: 266 RKAAIAR----FARTLSTMFSAGVPLVDALTSVSGATGNALYREATLRMRDETSAGAQLQ 321 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 S+ + + G+L LA ++ + + +E Sbjct: 322 WSMRNTG------VFPNMVVQMVAIGEESGSLDSMLAKVADFYEAEVDNAVDSLSSLLEP 375 Query: 127 KASAWIIGSLPFCVSTLVYFTS 148 + + V + Sbjct: 376 LIMVVLGVLVGGLVIAMYLPIF 397 >gi|260775648|ref|ZP_05884544.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio coralliilyticus ATCC BAA-450] gi|260608064|gb|EEX34233.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio coralliilyticus ATCC BAA-450] Length = 292 Score = 72.1 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 66/159 (41%), Gaps = 4/159 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE--FRRVIET 58 ++H K K + P LD++ V+ G+ V ++ + + S + ++ Sbjct: 134 LEHRRKVLQDKISNQLPYLLDLMAMCVQTGMTVEASIQYLSSELSALDKDLGHTMNIVNE 193 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + L +++ + + P EV F + + G + L NL+ +R+ + + + Sbjct: 194 RSRLVGLDQALDELYQRFPATEVRSFVMTLKQSLRYGSAIYSVLNNLASDIREVRVLALE 253 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + + AK S +I + + L+ PG M ++ Sbjct: 254 EKIGKLSAKMSVPLILFILIPIVILIAA--PGIMRLMYG 290 >gi|87309116|ref|ZP_01091253.1| type IV fimbrial assembly protein PilC [Blastopirellula marina DSM 3645] gi|87288107|gb|EAQ80004.1| type IV fimbrial assembly protein PilC [Blastopirellula marina DSM 3645] Length = 466 Score = 72.1 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 55/166 (33%), Gaps = 6/166 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISR 71 + AGLP+ ++ ++ QS +++ V E G LSE++S+ Sbjct: 70 SRQLTTFTRQLAILQNAGLPILRSLKILEKQSKPGRLKNSLMDVCEDIESGAGLSEAMSK 129 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + + GG L L L+ + +++K KV+ + Sbjct: 130 CPKC-----FNRLYVNMIKAGEAGGALEVILLRLADFMERDEDLKRKVKGAMIYPAVVIT 184 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + + + + D L + + ++ Sbjct: 185 VAVGILTFIMIKIVPVFKTIFDDFELDLPPPTQLLITMSTAIVNYW 230 >gi|269966900|ref|ZP_06180973.1| putative tight adherence TadC-related transmembrane protein [Vibrio alginolyticus 40B] gi|269828567|gb|EEZ82828.1| putative tight adherence TadC-related transmembrane protein [Vibrio alginolyticus 40B] Length = 313 Score = 72.1 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 68/157 (43%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ ++ KR P+ LD++V +GL + A+ + + S + E V Sbjct: 153 LRRMVNKRQQAIRAGVPDMLDLLVVCTESGLGFNAALRRVADELVISHPELADEIDTVCN 212 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + E++ +V L+E+ +++S S++GG+L +L + RD++ A Sbjct: 213 KIKAGKPMPEALRELVLRTGLEELMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAA 272 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + A + K ++ + C + P +++ Sbjct: 273 EEIAAKIPVKMMFPMVLFIWPC--FFIVAIGPALISL 307 >gi|116748937|ref|YP_845624.1| type II secretion system protein [Syntrophobacter fumaroxidans MPOB] gi|116698001|gb|ABK17189.1| type II secretion system protein [Syntrophobacter fumaroxidans MPOB] Length = 319 Score = 72.1 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 68/158 (43%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 ++ +R + P+ALD++V V AG+ + A + + + P+ E + + Sbjct: 159 LRLKTSRRRKQLRRGLPDALDLMVVCVEAGMGIDSATYRVSEEMKLTNAPMSDELKYLNL 218 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +++ + L++V+ +T++ + G ++++AL S R +++ A Sbjct: 219 ELRAGKARRDALRNLALRTDLEDVNSLTTLLIQTDKFGTSVAQALRVHSDSFRTKRHQMA 278 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + A + K +I + + ++ P + Sbjct: 279 EELAAKLPVKLVLPLILFIFPSLFVVI--MGPAMIRAF 314 >gi|253574465|ref|ZP_04851806.1| type II secretion system protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251846170|gb|EES74177.1| type II secretion system protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 410 Score = 72.1 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 22/159 (13%), Positives = 51/159 (32%), Gaps = 6/159 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 + F ++AG+ + +A A++ QS P++ V G +LS +++ Sbjct: 70 NEQFVVFCRQFATMIKAGISIVEATAILAEQSESKPLKKTLAEVTAELRKGNTLSGAVAA 129 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 R P + + G++ E L L+ + KV++ + Sbjct: 130 YPRIFP-----SIFVHMVRAGEEAGSMEETLERLAVYFEKAHVTREKVKSAMTYPLIVSV 184 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + + + + L D + + Sbjct: 185 MAVFVIIFLLKFMIPRFQAMFAELGGDLPAITRFTLTLS 223 >gi|167957566|ref|ZP_02544640.1| pilin biogenesis protein [candidate division TM7 single-cell isolate TM7c] Length = 410 Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 57/171 (33%), Gaps = 9/171 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISR 71 D+ + + AG+P++ ++ + + +PV + V G+SL++++ + Sbjct: 65 QDELSIFTRQLSTMINAGVPLTRSLNSLQEHTENPVFRDTLDSVKGDVESGVSLADALGK 124 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + S + + G L E L L+ ++ K+++ Sbjct: 125 HPK-----VFSDIYVNMVRAGEAAGILDEVLNRLAVQQEKSATIRKKIKSAMTYPVVLVV 179 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG---VAAAFMLIGIMVM 179 I F + V + L L+ + + +I + Sbjct: 180 ISVLAFFGLMIFVIPKIGQIIIDLGGPDAELPLITKIMLGISNFIISFWYI 230 Score = 34.3 bits (77), Expect = 7.7, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 6/130 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + AG+ V +A+++ + V + G LS I P Sbjct: 277 FARTYASLIGAGVSVIEALSITSRAVGNKVYESTLQEACIRLENGEQLSRIIEEKSDLFP 336 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G LA ++ + + + + +E ++ G + Sbjct: 337 -----SILAQMLAVGEETGQTDTVLAKVADFYEEEVDTAIESISSIIEPVMIVFMGGMVG 391 Query: 138 FCVSTLVYFT 147 ++++ Sbjct: 392 LIAASVMLPI 401 >gi|77461042|ref|YP_350549.1| type II secretion system protein [Pseudomonas fluorescens Pf0-1] gi|77385045|gb|ABA76558.1| type 4 pilus biogenesis protein PilC [Pseudomonas fluorescens Pf0-1] Length = 405 Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 21/173 (12%), Positives = 55/173 (31%), Gaps = 8/173 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65 KR D + ++AG+P+ + +I +P +R V + G S Sbjct: 61 KRIKA--QDIALFTRQMATMMKAGVPLLQSFDIIGEGFENPAMRKLVDEVKQEVAAGNSF 118 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + ++ + + + + G L L ++ +++KAK++ Sbjct: 119 AAALRKKPQ-----YFDELYCNLVDAGEQSGALDTLLERVATYKEKSESLKAKIKKAMTY 173 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 A + + + V + + L+ ++ + + Sbjct: 174 PSAVVLVAAVVTGILLVKVVPQFQSVFSGFGAELPAFTLMVISLSEFMQQWWW 226 Score = 40.1 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 42/131 (32%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P+ +A+ + G + + V R+ + G+ L+ S+ Sbjct: 275 FARTLSTTFAAGVPLVEALDSVAGATGNVVFKRAVLRIRQDVSTGMQLNFSMRSTG---- 330 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++ + G L E L ++ D + ME + + Sbjct: 331 --IFPNMAVQMTAIGEESGALDEMLDKVAGFYEDEVDNMVDNLTSLMEPFIMVVLGVIVG 388 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 389 GLVVAMYLPIF 399 >gi|303248308|ref|ZP_07334570.1| Type II secretion system F domain protein [Desulfovibrio fructosovorans JJ] gi|302490333|gb|EFL50245.1| Type II secretion system F domain protein [Desulfovibrio fructosovorans JJ] Length = 314 Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 67/161 (41%), Gaps = 3/161 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + +KKR L P+ALD++V V AG+ + A+ + + + SE R + Sbjct: 151 LDSRVKKRQKAILHGLPDALDLLVVCVEAGMGLDAAIYRVCLEMTHKEPILSSELRLLTL 210 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S E++ + + L+++ ++ G ++++ L + +R ++ A Sbjct: 211 ELRAGKSRREALKNLSNRVGLEDMGSLVAMLIQTDMFGTSIAQTLRVYADSMRTKRFQLA 270 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158 + A + K ++ + + ++ + + + + Sbjct: 271 EELAAKLPVKLLFPLVLFIFPTLLIVILGPAGISLMRMFSS 311 >gi|317122043|ref|YP_004102046.1| type II secretion system F domain [Thermaerobacter marianensis DSM 12885] gi|315592023|gb|ADU51319.1| Type II secretion system F domain [Thermaerobacter marianensis DSM 12885] Length = 331 Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 66/143 (46%), Gaps = 2/143 (1%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 P+ +D++ SV AGL A+ + + PV +EFR+ ++ LG+ E++ + Sbjct: 186 ARALPDVMDLLSVSVEAGLGFDGAIQKVSEKFPAPVSTEFRQYLKELRLGVEREEALRSL 245 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 L E+ F+ + +LG +L+ L + LR ++ +A+ QA+ K + Sbjct: 246 ADRCELPELRSFAAAVIQADRLGVSLARVLRVQAEQLRFQRKQRAEEQAMKTPIKMLLPL 305 Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155 + + + ++ P + +L Sbjct: 306 VLFIFPTLFIVL--LGPALIQIL 326 >gi|297564240|ref|YP_003683213.1| Type II secretion system F domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848689|gb|ADH70707.1| Type II secretion system F domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 211 Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 58/166 (34%), Gaps = 11/166 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 ++ +RAG P +A+ + ++ V S + R L Sbjct: 51 LCRVLAAELRAGQPPEEALRISAAEAGPLVGSLTDAASLRREAE-----------REPDL 99 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 +++ + V + G L+E + L+ L +++ + + A + + +A ++ +LP Sbjct: 100 WALAYLAVCWEVAADTGAGLAEVVDALAANLTEQEEQRTEAAARTTGPRTTAIVLAALPA 159 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + L P G L A +G M+ Sbjct: 160 VGLLLSSGLGGSPLVFLFTTPLGLACLVGGVALDALGTWWTLRMVR 205 >gi|241664635|ref|YP_002982995.1| general secretion pathway protein F [Ralstonia pickettii 12D] gi|240866662|gb|ACS64323.1| general secretion pathway protein F [Ralstonia pickettii 12D] Length = 403 Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 64/181 (35%), Gaps = 14/181 (7%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65 KR + + + + AGLP+ +A+A + Q+ V + G SL Sbjct: 59 KRLSAQENAL--VTRQLASLLVAGLPLDEALAALADQAERAYVGELLAAIRAEVVGGSSL 116 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S ++++ + + + + GNL L+ L+ + R + +K++ Sbjct: 117 SVALAQHPK-----DFPDIYRALVSAGEHSGNLGLVLSRLADYIESRNALTSKIKLAFTY 171 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF---MLIGIMVMRLM 182 + V L+ + P ++V N + L + + + + + Sbjct: 172 PA---IVTVVAFAIVIFLLSYVVPQVVSVFANTKQKLPTLTIIMLWLSDFVRNWGWLAAI 228 Query: 183 I 183 + Sbjct: 229 V 229 >gi|190575612|ref|YP_001973457.1| putative pilus-assembly protein [Stenotrophomonas maltophilia K279a] gi|190013534|emb|CAQ47169.1| putative pilus-assembly protein [Stenotrophomonas maltophilia K279a] Length = 419 Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 19/173 (10%), Positives = 54/173 (31%), Gaps = 6/173 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + +++G+P+ A+ +I G + ++ + G S+ E++S+ Sbjct: 79 KDIAFFSRQMATMMKSGVPIVSALDIIASGHKNPRMKKLVDTIRTDIEGGSSMYEAVSKH 138 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L ++ + + +K K++ + Sbjct: 139 PVQ-----FDELYRNLVRAGEGAGVLETVLDTVATYKENIEALKGKIKKALFYPIMVVVV 193 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + V + + V + ++ + L+I Sbjct: 194 AMLVSGIMLVFVVPQFEDVFKSFGAELPAFTQMVVNLSRFMVSWWWLMLLIAI 246 Score = 35.9 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 15/136 (11%), Positives = 37/136 (27%), Gaps = 5/136 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + +AG+P+ +A+ ++ G + + V E + + Sbjct: 282 NSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNTVYEEAVLRMRDDVSVGYPVNMSMKQ 341 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P ++ + G L L ++ N + +E +I Sbjct: 342 TNLFPH-----MVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNSVDALSSLLEPMIMVFI 396 Query: 133 IGSLPFCVSTLVYFTS 148 + V + Sbjct: 397 GTIVGGMVIAMYLPIF 412 >gi|224823845|ref|ZP_03696954.1| type II secretion system protein [Lutiella nitroferrum 2002] gi|224604300|gb|EEG10474.1| type II secretion system protein [Lutiella nitroferrum 2002] Length = 408 Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 56/183 (30%), Gaps = 11/183 (6%) Query: 3 HLIKKRTAKF-----LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVI 56 +KKR A F D + ++AG+P+ + + S+ V V Sbjct: 52 QKLKKRKAGFGKRITDRDITLFTRQLATMMKAGVPLLQSFDISAKGHSNPAVTKMLLEVR 111 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 G+SL+E+ + + + GG L L L+ +K Sbjct: 112 ADVETGMSLAEAFRKRPL-----YFDKLFCNLIAAGETGGVLDSLLDKLATYREKIMAIK 166 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 K+++ + A + + V + D LL + + + Sbjct: 167 GKIKSAMIYPSAIIATAFIITTIIMLYVIPAFKDLFSSFGADLPAPTLLVIWLSDAFVKF 226 Query: 177 MVM 179 + Sbjct: 227 WWL 229 Score = 42.4 bits (98), Expect = 0.030, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 45/129 (34%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQ 79 + AG+P+ +A+ + G S + V +E +R+ +G SLS ++ R Sbjct: 279 RTLATMFTAGVPLVEALDSVGGASGNQVYAEATKRIQAEVSIGSSLSFAMQR------TN 332 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 ++ + G+L L ++ + + + ME + + Sbjct: 333 LFPNMVMQMTAIGEESGSLDHMLDKVADFYEEEVDNAVAAMSSLMEPVIMIVLGVLIGGL 392 Query: 140 VSTLVYFTS 148 V + Sbjct: 393 VVAMYMPIF 401 >gi|146281442|ref|YP_001171595.1| type 4 pilus biogenesis protein PilC [Pseudomonas stutzeri A1501] gi|145569647|gb|ABP78753.1| type 4 pilus biogenesis protein PilC [Pseudomonas stutzeri A1501] Length = 405 Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 18/166 (10%), Positives = 50/166 (30%), Gaps = 6/166 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + ++AG+P+ + +I +R + + G S + ++ + Sbjct: 67 DIALFTRQMATMMKAGVPLLQSFDIIGEGFDNPNMRKLVDDLKQEVAAGNSFATALRKKP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G+L L ++ + +KAK++ A + Sbjct: 127 Q-----YFDDLYCNLVDSGEQSGSLETLLDRVATYKEKTEALKAKIKKAMNYPIAVVLVA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + V + L+ + + L + Sbjct: 182 IIVSAILLIKVVPQFQEVFANFGAELPAFTLMVIGLSEALQEWWFI 227 Score = 40.5 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + AG+P+ DA+ + G + + V T + +S + Sbjct: 275 FARTLSTTFAAGVPLVDALDSVAGATGNVVFR-----SATMKVKSDVSSGMQLNFSMRTT 329 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + ++ + G+L E LA ++ D + ME A + + Sbjct: 330 GTFPTMAVQMTAIGEESGSLDEMLAKVATFYEDEVDNMVDSLTSLMEPMIMAVLGVLVGG 389 Query: 139 CVSTLVYFTS 148 + + Sbjct: 390 LIIAMYLPIF 399 >gi|21222912|ref|NP_628691.1| integral membrane protein [Streptomyces coelicolor A3(2)] gi|7242744|emb|CAB77318.1| putative integral membrane protein [Streptomyces coelicolor A3(2)] Length = 345 Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 18/174 (10%), Positives = 61/174 (35%), Gaps = 2/174 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + + + ++ + + A+ ++ +R +++ L +++ + Sbjct: 122 EALASWTESLRDTIAGAVGLEQAIPASARAAAPVLRPHLDALVDRLRSRTPLPDALQHLA 181 Query: 74 RYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G L + L L++ R+ +M+ +V A + S I Sbjct: 182 DEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQRASTRRSVQI 241 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + ++ + + ++ P G ++L +G +R + + Sbjct: 242 VVAVSVLFVLGLSIFNRDFVEP-YGSPVGQLVLVCVCGLFALGFWWLRKLSTIE 294 >gi|290957844|ref|YP_003489026.1| type II secretion system F protein [Streptomyces scabiei 87.22] gi|260647370|emb|CBG70475.1| putative type II secretion system F protein [Streptomyces scabiei 87.22] Length = 300 Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 60/144 (41%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +++R P+ LD++ V AGL A+ + + P E R + Sbjct: 139 IWQAVRERKDVIDRTLPDFLDVLAVVVSAGLGFRQALDRVAEKYEGPWADELRITLRQMD 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+S ++ + R ++V+ F + + +LG ++E L L+ +R A+ + Sbjct: 199 MGVSRRQAFDELRRRNTSEQVAQFVSALQQGEELGSPIAETLIQLAADMRRTDAQNARRR 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144 A KA+ + + L+ Sbjct: 259 AARTIPKATLVTLVFMLPATMILI 282 >gi|291279501|ref|YP_003496336.1| type IV pilus assembly protein PilC [Deferribacter desulfuricans SSM1] gi|290754203|dbj|BAI80580.1| type IV pilus assembly protein PilC [Deferribacter desulfuricans SSM1] Length = 402 Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 52/160 (32%), Gaps = 6/160 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 A + + AGLP+ A+ +I Q+ R F + E G S S ++ + Sbjct: 65 ATRQLATMINAGLPIVRALDIISAQTPKKKFRKIFLEIKEDIEQGQSFSRALEKHKNIFG 124 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + GG L + L LS+ + ++K KV++ M + + Sbjct: 125 -----DLYINMVAAGEAGGLLDDILDRLSQYMEKAISLKRKVKSAMMYPSIVLIVAVLVV 179 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + + +A + L Sbjct: 180 WGLMVFIIPKFKEMYEGFGGQLPALTQFTIAMSNFLSSWY 219 Score = 39.7 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 13/134 (9%), Positives = 40/134 (29%), Gaps = 5/134 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + +G+ + DA+ ++ S + V + + + + + Sbjct: 267 AISKFARTFGTLLSSGVAILDALDIVAKTSGNKVIEKHLL-----KSKVDIEAGKTVVQP 321 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 T + + G L + L ++ D + + +E ++ G Sbjct: 322 LEKAGVFPPMVTQMIAVGEETGALDKMLTKIADFYDDEVDRTVEGLTKMIEPMLMIFVGG 381 Query: 135 SLPFCVSTLVYFTS 148 ++ F + + Sbjct: 382 AVGFVIIAMYLPIF 395 >gi|213970187|ref|ZP_03398318.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. tomato T1] gi|301385925|ref|ZP_07234343.1| type II secretion system protein [Pseudomonas syringae pv. tomato Max13] gi|302063132|ref|ZP_07254673.1| type II secretion system protein [Pseudomonas syringae pv. tomato K40] gi|302134158|ref|ZP_07260148.1| type II secretion system protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925068|gb|EEB58632.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. tomato T1] Length = 405 Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 19/172 (11%), Positives = 55/172 (31%), Gaps = 7/172 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMV 73 D + ++AG+P+ + +I + +P + + G S + ++ + Sbjct: 67 DIAFFSRQMATMMKAGVPLLQSFDIISEGAENPNMRSLVNSLKQEVSAGNSFATALRQKP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G L L ++ + +KAK++ A + Sbjct: 127 EH-----FDDLFCNLVDAGEQAGALESLLDRVATYKEKTEKLKAKIKKAMTYPAAVLIVA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + V + L+ ++ +I + +++ F Sbjct: 182 VIVSGILLIKVVPQFQSVFAGFGAELPMFTLMVISL-SEVIQQWWIAIVVAF 232 Score = 40.5 bits (93), Expect = 0.100, Method: Composition-based stats. Identities = 15/128 (11%), Positives = 37/128 (28%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + + AG+P+ +A+ + G + + V + +S + Sbjct: 277 RTLATTFSAGVPLVEALESVAGATGNVVFK-----NAVHKVKQDVSTGMQLNFSMRSTGV 331 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + ++ + G L L ++ D + ME A + + V Sbjct: 332 FPSLAIQMTAIGEESGALDSMLDKVATYYEDEVDNMVDSLTSLMEPMIMAILGVVVGGLV 391 Query: 141 STLVYFTS 148 + Sbjct: 392 IAMYLPIF 399 >gi|289769864|ref|ZP_06529242.1| integral membrane protein [Streptomyces lividans TK24] gi|289700063|gb|EFD67492.1| integral membrane protein [Streptomyces lividans TK24] Length = 330 Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 18/174 (10%), Positives = 61/174 (35%), Gaps = 2/174 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + + + ++ + + A+ ++ +R +++ L +++ + Sbjct: 107 EALASWTESLRDTIAGAVGLEQAIPASARAAAPVLRPHLDALVDRLRSRTPLPDALQHLA 166 Query: 74 RYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G L + L L++ R+ +M+ +V A + S I Sbjct: 167 DEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQRASTRRSVQI 226 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + ++ + + ++ P G ++L +G +R + + Sbjct: 227 VVAVSVLFVLGLSIFNRDFVEP-YGSPVGQLVLVCVCGLFALGFWWLRKLSTIE 279 >gi|330900441|gb|EGH31860.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. japonica str. M301072PT] Length = 405 Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 19/165 (11%), Positives = 52/165 (31%), Gaps = 6/165 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMV 73 D + ++AG+P+ + +I + +P + + G S + ++ + Sbjct: 67 DIAFFSRQMATMMKAGVPLLQSFDIISEGAENPNMRTLVVSLKQEVSAGNSFATALRQKP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G L L ++ + +KAK++ A + Sbjct: 127 EH-----FDELFCNLVDAGEQAGALESLLDRVATYKEKTEKLKAKIKKAMTYPTAVLVVA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + V + D L+ +A + + + Sbjct: 182 VIVSGILLIKVVPQFQTVFSSFGADLPLFTLMVIALSEFVQQWWL 226 Score = 40.1 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 15/128 (11%), Positives = 37/128 (28%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + + AG+P+ +A+ + G + + V + +S + Sbjct: 277 RTLATTFSAGVPLVEALDSVAGATGNVVFR-----NAVHKVKQDVSTGMQLNFSMRSTGV 331 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + ++ + G L L ++ D + ME A + + V Sbjct: 332 FPSLAIQMTAIGEESGALDSMLDKVATYYEDEVDNMVDSLTSLMEPMIMAVLGVIVGGLV 391 Query: 141 STLVYFTS 148 + Sbjct: 392 IAMYLPIF 399 >gi|322434108|ref|YP_004216320.1| Type II secretion system F domain protein [Acidobacterium sp. MP5ACTX9] gi|321161835|gb|ADW67540.1| Type II secretion system F domain protein [Acidobacterium sp. MP5ACTX9] Length = 302 Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 61/148 (41%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + ++K R K P+ +D++V V AGL + A+ + + + + E ++ Sbjct: 139 LSRMVKGRREKIRLSIPDMIDLLVICVDAGLGMDQAMLRVGQELGTTHPQIYEEIMQINR 198 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 Q G ES M + L E+ F ++ + G ++ AL+ +R ++ +A Sbjct: 199 EQRAGKLRLESWQAMAQRTQLPEIDGFVNMLMQNERFGTPIARALSTFGDNIRQKRRQRA 258 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + A K ++ + + ++ Sbjct: 259 EELAAKTTVKIIFPLVLFIFPSMFIVLL 286 >gi|88856327|ref|ZP_01130986.1| hypothetical protein A20C1_00265 [marine actinobacterium PHSC20C1] gi|88814411|gb|EAR24274.1| hypothetical protein A20C1_00265 [marine actinobacterium PHSC20C1] Length = 288 Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 72/186 (38%), Gaps = 3/186 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + R +P+ +D +V +VR+GL + D++ + RS F Sbjct: 97 ISWRARARRTATQIVWPDVVDQLVSAVRSGLALPDSLMTLSQTGPLVTRSAFAAFAARYR 156 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKV 119 + S ++ + + + + ++GG+ L+ L +LS LR +++++ Sbjct: 157 ATGNFSIAVDELKVALADPVADRILETLRMSREVGGSELTNVLRSLSVYLRQEAAIRSEI 216 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +A +A + + P+ V L+ T P N G L+ L+ +M Sbjct: 217 EARQSWVMNAARLGLAAPWVVLFLLT-TRPEAAAA-YNSASGVALIVAGLILSLVAYRIM 274 Query: 180 RLMINF 185 + Sbjct: 275 AGIGRL 280 >gi|217978831|ref|YP_002362978.1| type II secretion system protein [Methylocella silvestris BL2] gi|217504207|gb|ACK51616.1| type II secretion system protein [Methylocella silvestris BL2] Length = 320 Score = 71.7 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 65/143 (45%), Gaps = 3/143 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61 +++RT P+AL+++V V AGL + DA+ + + S + E ++ Sbjct: 161 VRRRTKAAAAGLPDALELLVVCVEAGLSLEDALQRVAQELKNSQPALADELTLTWAEINI 220 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 S ++++ + + + V ++IS + G L+++L + +R+ + + +A Sbjct: 221 LPSREQALANLADRVNVPTVKSMVSMISQSMRYGTPLAQSLRVGATEMRNDQMTLLEERA 280 Query: 122 LSMEAKASAWIIGSLPFCVSTLV 144 + A + ++ + + +V Sbjct: 281 NRLPALMTIPVMLFIMPTLFLIV 303 >gi|224368238|ref|YP_002602401.1| GspF1 [Desulfobacterium autotrophicum HRM2] gi|223690954|gb|ACN14237.1| GspF1 [Desulfobacterium autotrophicum HRM2] Length = 411 Score = 71.7 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 60/172 (34%), Gaps = 6/172 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISR 71 + + + AG P+ AV+ +V Q+ S P++ ++ + G S +E+++ Sbjct: 71 NAELAMVTRQLATLLSAGFPLISAVSSLVTQTRSKPLKKVLSKIKGSIEEGKSFAEALAM 130 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 S + + G L L L+ I R+ K K+QA A Sbjct: 131 YPSL-----FSAIYINMIRAGESSGTLEIVLERLADITEKREETKKKIQAALAYPVLMAI 185 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + + + + + G L ++ + L L++ Sbjct: 186 VGALVLLFLLAYIVPGIIAIFSDMNQTLPGPTLFLISVSSFLKRFWWAVLLV 237 >gi|108804005|ref|YP_643942.1| type II secretion system protein [Rubrobacter xylanophilus DSM 9941] gi|108765248|gb|ABG04130.1| type II secretion system protein [Rubrobacter xylanophilus DSM 9941] Length = 403 Score = 71.7 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 55/164 (33%), Gaps = 6/164 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 D + + AGLP+ A+ ++ Q+++ +R +V G++LSE++ R Sbjct: 63 DLVVFTRQLSTMINAGLPIVRALHILEEQTANKKLRDVIVKVRSDVEAGMALSEALERHP 122 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + ++GG L L ++ L + ++ K+++ Sbjct: 123 EVFG-----RLYVEMVRAGEVGGVLDRVLLRVASQLEKDQELRRKIKSALAYPAVVLVAA 177 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + L + + + +L G Sbjct: 178 VLAAAFMLIFIVPIFARMFEDLGGTLPLPTRIAMGISDLLTGPW 221 Score = 35.5 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 15/136 (11%), Positives = 35/136 (25%), Gaps = 5/136 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + V AG+P+ A+ + S + V ++ E Sbjct: 269 LARFARTLGSLVAAGVPILQAIEITAASSGNWVVE-----NALMKSRDAIREGHPLHRPL 323 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 T + + G+L L ++ K +E + G Sbjct: 324 EGEAVFPPMVTRMIAVGEETGDLEGMLGKIADFYESEVEAAVKALTSIIEPVMIVIVGGI 383 Query: 136 LPFCVSTLVYFTSPGY 151 + + ++ + Sbjct: 384 VGGIIISMYLPMFRIF 399 >gi|166713143|ref|ZP_02244350.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 444 Score = 71.7 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 21/173 (12%), Positives = 55/173 (31%), Gaps = 6/173 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + +++G+P+ ++ +I + ++ ++ G SL ESIS+ Sbjct: 104 KEIAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLYESISKH 163 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L ++ + + +K K++ + Sbjct: 164 PVQ-----FDELYRNLVRAGEGAGVLETVLETVATYKENIEALKGKIKKAMFYPAMVVAV 218 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + V + L V A+ ++ + LM+ Sbjct: 219 AIIVSAILLIFVVPQFEEVFKSFGAELPAFTQLLVNASRFMVSYWWLMLMVTV 271 Score = 38.9 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 16/137 (11%), Positives = 48/137 (35%), Gaps = 7/137 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISR 71 + +AG+P+ +A+ ++ G + + + E R+ + +G ++ ++ + Sbjct: 307 NSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEEAVFRMRDDVSVGYPVNMAMKQ 366 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + ++ + G L L ++ D N + +E + Sbjct: 367 VNLFPHM------VIQMTAIGEEAGALDAMLFKVAEYFEDEVNNAVDALSSLLEPLIMVF 420 Query: 132 IIGSLPFCVSTLVYFTS 148 I + V + Sbjct: 421 IGTIVGGMVIGMYLPIF 437 >gi|118466209|ref|YP_879790.1| type II secretion system protein F [Mycobacterium avium 104] gi|118167496|gb|ABK68393.1| bacterial type II secretion system protein F domain [Mycobacterium avium 104] Length = 267 Score = 71.7 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 69/172 (40%), Gaps = 1/172 (0%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 ALD++V +RAG A V G+++ PV R V LG ++ ++ Sbjct: 92 RALETALDVLVGELRAGSHPVRAFDVAAGETAGPVAVALRSVAARARLGADVAAGLAAAS 151 Query: 74 RYMPLQE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R E + + G ++ + R + +R+ A+V + A+A+A I Sbjct: 152 RGSARPEHWQRLALCWRLAGDHGLGIATLMRAAQRDIAERQRFSARVSSSLAGARATAAI 211 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + +LP L ++ L+ G LL V A G++ +++ Sbjct: 212 LAALPVLGVLLGQLIGARPLDFLLGGQVGGWLLLVGATLACAGLLWADRIVD 263 >gi|317471422|ref|ZP_07930774.1| type II secretion system protein [Anaerostipes sp. 3_2_56FAA] gi|316901037|gb|EFV22999.1| type II secretion system protein [Anaerostipes sp. 3_2_56FAA] Length = 401 Score = 71.7 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 22/200 (11%), Positives = 69/200 (34%), Gaps = 22/200 (11%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRSEFRRVIETQH 60 L KR K + + ++AG+ + ++ +I + + ++ ++ + Sbjct: 49 KLKSKRKMK-ASVLADFCRQLGTLLKAGVSLVRSLNIIANEIGVRSTDKETYQNLLNSIR 107 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ LSE++ R P+ + ++ GNL + ++ + KV+ Sbjct: 108 QGIPLSEAMDEQGRTFPV-----LLVSMMRSAEANGNLDQTSLRMAEHYEKENRLNGKVR 162 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--------------HMLLG 166 + + ++ + + + + + +++ P + Sbjct: 163 NAMIYPIVLSVLLVGVIIFILSYLVPQFQDIFDTMVSLPLPTVILLGLSGGIRKYWPFIL 222 Query: 167 VAAAFMLIGIMVMRLMINFD 186 + A ++ GI ++ + Sbjct: 223 LILAAVIFGIRLILRIPKVR 242 Score = 38.2 bits (87), Expect = 0.59, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 38/133 (28%), Gaps = 5/133 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + +G+P+ A+ + + E S+ S V M + Sbjct: 267 FARTLCSLYSSGIPIIQAMQIGSSTVGNRYIEEQF-----GQAVDSIRRGESLSVSLMEI 321 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G+L E L +++ L + +E + + F Sbjct: 322 DGFQKKLSSAIQVGEETGSLDEMLDSIAESLEFEAERALERLVTLLEPVLIILMAVIIGF 381 Query: 139 CVSTLVYFTSPGY 151 V ++ Y Sbjct: 382 VVVAVILPIYESY 394 >gi|147677788|ref|YP_001212003.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum SI] gi|146273885|dbj|BAF59634.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum SI] Length = 307 Score = 71.7 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 64/145 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I R + P+ +D++ SV AGL A+ + + + EF ++++ Sbjct: 150 LNKKILDRKKEIEKSLPDVMDLLTVSVEAGLSFDGALMKVTEKKRGVLSEEFTKMLQEIK 209 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G E++ + R + + ++S F+ + + QLG ++ L S +R ++ A+ Sbjct: 210 IGRPRLEALRDLSRRLDVDDLSAFAGAVILADQLGISIGNILRVQSDQIRMKRRQAAEEM 269 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145 A+ K ++ + + ++ Sbjct: 270 AMKAPVKMLIPMVLFIFPAIFVVLL 294 >gi|297623007|ref|YP_003704441.1| Type II secretion system F domain-containing protein [Truepera radiovictrix DSM 17093] gi|297164187|gb|ADI13898.1| Type II secretion system F domain protein [Truepera radiovictrix DSM 17093] Length = 409 Score = 71.7 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 60/161 (37%), Gaps = 6/161 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AGLPV ++A++ Q+ D ++ +R+ E G LSE++++ + Sbjct: 73 FSRQFATVINAGLPVVQSLAILQRQAEKDALKEALKRIREEVETGTPLSEALAKHPKLFG 132 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + GNL L ++ + ++ K+++ I + Sbjct: 133 -----RLYVYLVRAGEASGNLDSILERIALYQEKQAALRGKLRSALTYPTVVLLIALGVT 187 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + T + G + L + + +A + L G Sbjct: 188 YFLLTGIVPQFAGILTQLGGELPLMTRVLIAISDFLRGQWW 228 >gi|254479916|ref|ZP_05093164.1| Bacterial type II secretion system protein F domain [marine gamma proteobacterium HTCC2148] gi|214039478|gb|EEB80137.1| Bacterial type II secretion system protein F domain [marine gamma proteobacterium HTCC2148] Length = 406 Score = 71.7 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 19/171 (11%), Positives = 54/171 (31%), Gaps = 6/171 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D + ++AG+P+ + ++ +++ ++ G L+ S+++ Sbjct: 67 ADIAIFTRQLATMMKAGVPLVQSFEIVADGVEKPRMKTLIVEIMNDVASGTGLAPSLAKH 126 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R+ + + G L L ++ + +KAK++ A + Sbjct: 127 PRH-----FDELFCSLIASGEESGTLEVMLDRVATYKEKTEALKAKIKKAMTYPIAVMAV 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + V +D L + + + + L+ Sbjct: 182 AVVVTLILLIKVIPVFASTFQNFGSDLPAFTLFVMHLSEWVQEWWFIMLIA 232 >gi|309780544|ref|ZP_07675291.1| general secretion pathway protein F [Ralstonia sp. 5_7_47FAA] gi|308920699|gb|EFP66349.1| general secretion pathway protein F [Ralstonia sp. 5_7_47FAA] Length = 403 Score = 71.7 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 64/181 (35%), Gaps = 14/181 (7%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65 KR + + + + AGLP+ +A+A + Q+ V + G SL Sbjct: 59 KRLSAQENAL--VTRQLASLLVAGLPLDEALAALADQAERAYVGELLAAIRAEVVGGSSL 116 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S ++++ + + + + GNL L+ L+ + R + +K++ Sbjct: 117 SVALAQHPK-----DFPDIYRALVSAGEHSGNLGLVLSRLADYIESRNALTSKIKLAFTY 171 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF---MLIGIMVMRLM 182 + V L+ + P ++V N + L + + + + + Sbjct: 172 PA---IVTVVAFAIVIFLLSYVVPQVVSVFANTKQKLPTLTIIMLWLSDFVRNWGWLAAI 228 Query: 183 I 183 + Sbjct: 229 V 229 >gi|254229337|ref|ZP_04922754.1| bacterial type II secretion system protein F domain [Vibrio sp. Ex25] gi|262393424|ref|YP_003285278.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio sp. Ex25] gi|151938145|gb|EDN56986.1| bacterial type II secretion system protein F domain [Vibrio sp. Ex25] gi|262337018|gb|ACY50813.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio sp. Ex25] Length = 313 Score = 71.7 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 68/157 (43%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ ++ KR P+ LD++V +GL + A+ + + S + E V Sbjct: 153 LRRMVNKRQQAIRAGVPDMLDLLVVCTESGLGFNAALRRVADELVISHPELADEIDTVCN 212 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + E++ +V L+E+ +++S S++GG+L +L + RD++ A Sbjct: 213 KIKAGKPMPEALRELVLRTGLEELMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAA 272 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + A + K ++ + C + P +++ Sbjct: 273 EEIAAKIPVKMMFPMVLFIWPC--FFIVAIGPALISL 307 >gi|309777430|ref|ZP_07672388.1| putative bacterial type II secretion system protein F domain protein [Erysipelotrichaceae bacterium 3_1_53] gi|308914826|gb|EFP60608.1| putative bacterial type II secretion system protein F domain protein [Erysipelotrichaceae bacterium 3_1_53] Length = 266 Score = 71.3 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 73/191 (38%), Gaps = 8/191 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55 H +KR+ + F + L+ + S+ AG+ V D++ + + E + Sbjct: 77 NHQNEKRSIELSRQFKDMLENLAASISAGVNVPDSIKSAYHSMQQQYDENAYIVKELHNI 136 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + + +++ + +++ F+ + GGN+ E + N IL D+ + Sbjct: 137 LIGFNNNINIETMLLDFGNRSGNEDIISFANTFETSYRKGGNMKEIIRNTYEILNDKITI 196 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + +V+ + ++ I+ +P S ++ G + G A +I Sbjct: 197 EMEVKTMIAASRNELNIMMCMPVLFSLVLNVMGGDITGH--ATLIGRIATGAAVMMFIIA 254 Query: 176 IMVMRLMINFD 186 MV + ++ Sbjct: 255 YMVGKKLMTIK 265 >gi|46143337|ref|ZP_00204444.1| COG2064: Flp pilus assembly protein TadC [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208032|ref|YP_001053257.1| tight adherence protein C [Actinobacillus pleuropneumoniae L20] gi|126096824|gb|ABN73652.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 281 Score = 71.3 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 71/154 (46%), Gaps = 4/154 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--TQHL 61 ++K + + ++D P +D++ +V+ G+ + A + ++ + Sbjct: 126 ILKSKIKRIMNDIPGFIDLVAVNVQTGISIEAAFKQVAIDFEHLNADLTYVILRIIRKAE 185 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 SLS ++ M +P +E+ F TV+ G +L E L LS +R+ + + + + Sbjct: 186 LTSLSTALQDMAISLPTKEIRMFCTVMQQSLNFGSSLYEHLTQLSADIREMQLLVMEEKL 245 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ AK S +I + F + L+ +PG M VL Sbjct: 246 GTLSAKMSIPLILFIMFPIIILI--VAPGAMRVL 277 >gi|315181052|gb|ADT87966.1| Flp pilus assembly protein TadC [Vibrio furnissii NCTC 11218] Length = 318 Score = 71.3 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 78/157 (49%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + ++KKR ++ P+ALD++V +GL + A+ + + S + E V Sbjct: 158 LDRMVKKRKSRIKGGIPDALDLLVVCTESGLGFNAALRRVADELMISHPDLADELDTVCA 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ +SE+++++V L E+S ++++ S++GG++S+ L + + RD++N + Sbjct: 218 KIKAGVEMSEAMAQLVERTGLTEISGLVSMLAHASRIGGSISQTLRDYTEDFRDKRNQEI 277 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + A + K ++ + C + P +++ Sbjct: 278 EEIAAKIPTKMIFPLLLFIWPC--FFIVAVGPSMLSL 312 >gi|115376389|ref|ZP_01463626.1| Flp pilus assembly protein TadC [Stigmatella aurantiaca DW4/3-1] gi|115366596|gb|EAU65594.1| Flp pilus assembly protein TadC [Stigmatella aurantiaca DW4/3-1] Length = 238 Score = 71.3 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 70/162 (43%), Gaps = 3/162 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQ 59 + +K+R P LD++ SV AGL + A++ +V + S P++ E V++ Sbjct: 79 VNDQVKRRHLAISRALPYNLDLLTLSVEAGLDFTAALSKVVEKGKSGPLKEEMSIVLKQL 138 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 +G + E++ M+ + L ++ F T + ++G +L + L S +R + +A+ Sbjct: 139 KMGKTREEALKAMILRVDLPSLTTFVTALIQADKMGTSLGKVLRIQSTQMRIDRTQRAEK 198 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 A K +I + V + P + + G Sbjct: 199 LAGEAPVKMLFPLIACIFPTVF--MVLFGPIVFQFMFGNVGG 238 >gi|108756874|ref|YP_632816.1| type II secretion system protein F domain [Myxococcus xanthus DK 1622] gi|108460754|gb|ABF85939.1| type II secretion system protein F domain protein [Myxococcus xanthus DK 1622] Length = 296 Score = 71.3 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 70/162 (43%), Gaps = 3/162 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQ 59 + +KKR P +LD++ SV AGL + A+A +V + P+R E + V++ Sbjct: 137 LNDQVKKRHLLISRALPYSLDLLTLSVEAGLDFTAALAKVVEKGKPGPLREELQLVLKQL 196 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 +G + E + M+ + L ++ F T + ++G +L + L S +R + +A+ Sbjct: 197 KMGKTREEGLKSMIVRVDLPPLTTFVTALIQADKMGTSLGKVLRIQSTQMRIDRTQRAEK 256 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 A K +I + V + P + + G Sbjct: 257 LAGEAPVKMLFPLIACIFPTVF--MVLFGPIVFQFMFGNVAG 296 >gi|41406515|ref|NP_959351.1| hypothetical protein MAP0417 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394864|gb|AAS02734.1| hypothetical protein MAP_0417 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 267 Score = 71.3 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 69/172 (40%), Gaps = 1/172 (0%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 ALD++V +RAG A V G+++ PV R V LG ++ ++ Sbjct: 92 RALETALDVLVGELRAGSHPVRAFDVAAGETAGPVAVALRSVAARARLGADVAAGLAAAS 151 Query: 74 RYMPLQE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R E + + G ++ + R + +R+ A+V + A+A+A I Sbjct: 152 RSSARPEHWQRLALCWRLAGDHGLGIATLMRAAQRDIAERQRFSARVSSSLAGARATAAI 211 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + +LP L ++ L+ G LL V A G++ +++ Sbjct: 212 LAALPVLGVLLGQLIGARPLDFLLGGQVGGWLLLVGATLACAGLLWADRIVD 263 >gi|329939412|ref|ZP_08288748.1| integral membrane protein [Streptomyces griseoaurantiacus M045] gi|329301641|gb|EGG45535.1| integral membrane protein [Streptomyces griseoaurantiacus M045] Length = 316 Score = 71.3 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 67/184 (36%), Gaps = 1/184 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +++ + + ++ VRAG +A+ S + V+ Sbjct: 129 VARTVQRDRERRGEAVIALCAVLAGEVRAGRQPGEALRHAAQD-SGGLGGARAAVLAAAR 187 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + +++ R + + + V G L+ L L LR ++ +A ++ Sbjct: 188 FGGDVPGALTEAARGPGAEGLLGLAACWRVAVDRGAGLAAGLDRLEAALRAERDQRADLR 247 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A A+++A ++ LP L ++V+++ G M L A G+ Sbjct: 248 AQLAGARSTAVMLAGLPVLGLLLGTALGADPLHVVLHTGPGLMCLLAGAVLEAAGLWWAL 307 Query: 181 LMIN 184 ++ Sbjct: 308 RIVR 311 >gi|260771470|ref|ZP_05880395.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio furnissii CIP 102972] gi|260613596|gb|EEX38790.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio furnissii CIP 102972] Length = 318 Score = 71.3 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 78/157 (49%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + ++KKR ++ P+ALD++V +GL + A+ + + S + E V Sbjct: 158 LDRMVKKRKSRIKGGIPDALDLLVVCTESGLGFNAALRRVADELMISHPDLADELDTVCA 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ +SE+++++V L E+S ++++ S++GG++S+ L + + RD++N + Sbjct: 218 KIKAGVEMSEAMAQLVERTGLTEISGLVSMLAHASRIGGSISQTLRDYTEDFRDKRNQEI 277 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + A + K ++ + C + P +++ Sbjct: 278 EEIAAKIPTKMIFPLLLFIWPC--FFIVAVGPSMLSL 312 >gi|88856422|ref|ZP_01131080.1| putative integral membrane protein [marine actinobacterium PHSC20C1] gi|88814289|gb|EAR24153.1| putative integral membrane protein [marine actinobacterium PHSC20C1] Length = 305 Score = 71.3 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 63/180 (35%), Gaps = 4/180 (2%) Query: 9 TAKFLDDFPNA---LDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLS 64 + P + + AGL S A + +S+D V + E Sbjct: 1 MKRARSQLPEVASVTQRLAVLLNAGLTPSSAWFHVARGRSADGVAALVALAGEEPGGAAE 60 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + + + Q + + V Q+G L+ AL +R LR +++ +V Sbjct: 61 RIVRAAEGLAPLDRQAWNSLAAAWFVAGQVGAPLAAALRTHARALRMLVHVQREVATALA 120 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A+A ++ +LP + VL++ P G L V A + + R ++ Sbjct: 121 APVATARMVLALPAIGLVFGALLGFDTIGVLVSTPIGWGCLVVGGALIAAAVRWNRRLVR 180 >gi|165975969|ref|YP_001651562.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149860|ref|YP_001968385.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303251577|ref|ZP_07337751.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252182|ref|ZP_07338350.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245407|ref|ZP_07527495.1| hypothetical protein appser1_6120 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247522|ref|ZP_07529567.1| hypothetical protein appser2_5180 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249754|ref|ZP_07531732.1| hypothetical protein appser4_5560 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252110|ref|ZP_07534009.1| hypothetical protein appser6_6280 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307254362|ref|ZP_07536200.1| hypothetical protein appser9_6100 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256569|ref|ZP_07538350.1| hypothetical protein appser10_5740 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258820|ref|ZP_07540552.1| hypothetical protein appser11_6180 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260999|ref|ZP_07542681.1| hypothetical protein appser12_5660 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263184|ref|ZP_07544805.1| hypothetical protein appser13_6060 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|165876070|gb|ABY69118.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914991|gb|ACE61243.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302648965|gb|EFL79153.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649575|gb|EFL79757.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306853748|gb|EFM85965.1| hypothetical protein appser1_6120 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856025|gb|EFM88183.1| hypothetical protein appser2_5180 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858169|gb|EFM90247.1| hypothetical protein appser4_5560 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860410|gb|EFM92424.1| hypothetical protein appser6_6280 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862661|gb|EFM94617.1| hypothetical protein appser9_6100 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306864979|gb|EFM96881.1| hypothetical protein appser10_5740 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867171|gb|EFM99027.1| hypothetical protein appser11_6180 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869301|gb|EFN01096.1| hypothetical protein appser12_5660 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871546|gb|EFN03269.1| hypothetical protein appser13_6060 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 281 Score = 71.3 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 71/154 (46%), Gaps = 4/154 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--TQHL 61 ++K + + ++D P +D++ +V+ G+ + A + ++ + Sbjct: 126 ILKSKIKRIMNDIPGFIDLVAVNVQTGISIEAAFKQVAIDFEHLNADLTYVILRIIRKAE 185 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 SLS ++ M +P +E+ F TV+ G +L E L LS +R+ + + + + Sbjct: 186 LTSLSAALQDMAISLPTKEIRMFCTVMQQSLNFGSSLYEHLTQLSADIREMQLLVMEEKL 245 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ AK S +I + F + L+ +PG M VL Sbjct: 246 GTLSAKMSIPLILFIMFPIIILI--VAPGAMRVL 277 >gi|127511327|ref|YP_001092524.1| type II secretion system protein [Shewanella loihica PV-4] gi|126636622|gb|ABO22265.1| type II secretion system protein [Shewanella loihica PV-4] Length = 405 Score = 71.3 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 21/171 (12%), Positives = 50/171 (29%), Gaps = 6/171 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D+ + R+G+P+ A+A + S ++ + E G LS + Sbjct: 64 DELQIFTRQMYSLTRSGIPILRAIAGLSESSHSKRMKDALNDISEQLISGRPLSSA---- 119 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L +A LS + + + +++A Sbjct: 120 -MNHHPDVFDALFVSMIHVGENTGKLEDAFIQLSGYIEREQETRRRIKAAMRYPIFVLMA 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + ++ +V D L + + + + L+ Sbjct: 179 VALAMVVLNIMVIPKFADLFARFGADLPWATKLLIGTSNFFVNYWYLLLIA 229 Score = 41.3 bits (95), Expect = 0.063, Method: Composition-based stats. Identities = 10/132 (7%), Positives = 35/132 (26%), Gaps = 5/132 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + AG+P++ A++++ + + + + S + Sbjct: 269 LSRYCRSFSMMLSAGVPMTQALSLVADAVDNAYMHDRIVAMRR-----GIESGESMLRVS 323 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 Q + + + G + + L + + + K +E + Sbjct: 324 NQSQLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGIVAVI 383 Query: 136 LPFCVSTLVYFT 147 + + Sbjct: 384 VLILALGIYLPM 395 >gi|291520244|emb|CBK75465.1| Flp pilus assembly protein TadB [Butyrivibrio fibrisolvens 16/4] Length = 245 Score = 71.3 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 76/184 (41%), Gaps = 6/184 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRVIE 57 + ++ + +F + +IV S++ G + A+ + + + + + Sbjct: 62 IKAEKRGRLSAEFKEFMMLIVASLQTGYSLERAIKQSEVELHKLYPNGCIIAGQVHILNQ 121 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + L ++ + + L+E + +IS + GGN + + + + + + +K Sbjct: 122 KIAMNVQLEKAFFEFAKAIELEEALSLAEIISFAKRSGGNYGKHIRDTALKIEENILIKQ 181 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 +++ ++ E + ++ +P + + TSP ++ + + G L+ + I+ Sbjct: 182 EIETITTEKRLELKVMCIMPIGILAYISLTSPNFIAPIYGNVLGAGLMSLCLIVYGALII 241 Query: 178 VMRL 181 + R Sbjct: 242 LGRK 245 >gi|256785972|ref|ZP_05524403.1| integral membrane protein [Streptomyces lividans TK24] Length = 347 Score = 71.3 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 18/174 (10%), Positives = 61/174 (35%), Gaps = 2/174 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + + + ++ + + A+ ++ +R +++ L +++ + Sbjct: 124 EALASWTESLRDTIAGAVGLEQAIPASARAAAPVLRPHLDALVDRLRSRTPLPDALQHLA 183 Query: 74 RYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G L + L L++ R+ +M+ +V A + S I Sbjct: 184 DEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQRASTRRSVQI 243 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + ++ + + ++ P G ++L +G +R + + Sbjct: 244 VVAVSVLFVLGLSIFNRDFVEP-YGSPVGQLVLVCVCGLFALGFWWLRKLSTIE 296 >gi|330973678|gb|EGH73744.1| type II secretion system protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 405 Score = 71.3 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 16/165 (9%), Positives = 47/165 (28%), Gaps = 5/165 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D + ++AG+P+ + +I + +P ++ + + M Sbjct: 67 DIAFFARQMATMMKAGVPLLQSFDIIGEGAENPNMRALVSSLKQEVSAGN----SFAMAL 122 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + G L L ++ + +KAK++ A + Sbjct: 123 RQKPEYFDDLFCNLVDAGEQAGALESLLDRVASYKEKTEKLKAKIKKAMTYPAAVLIVAV 182 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + V + L+ + ++ + Sbjct: 183 IVSGILLIEVVPQFQSVFAGFGAELPTFTLMVIGL-SEVVQKWWL 226 Score = 35.5 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 49/166 (29%), Gaps = 26/166 (15%) Query: 3 HLIKKRTAKFLDDFPNAL-------------------DIIVRSVRAGLPVSDAVAVIVGQ 43 KR+ KF D L + + AG+P+ +A+ + G Sbjct: 240 KRAYKRSQKFRDSLDRFLLKIPVIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGA 299 Query: 44 SSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102 + + V +V + G+ L+ S+ + ++ + G L L Sbjct: 300 TGNVVFRNAVNKVKQDVSTGMQLNFSMRSTG------VFPSLAIQMTAIGEESGALDNML 353 Query: 103 ANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 ++ D + ME A + + V + Sbjct: 354 DKVATYYEDEVDNMVDSLTSLMEPMIMAVLGVVVGGLVIAMYLPIF 399 >gi|84685156|ref|ZP_01013055.1| Putative Flp pilus assembly protein TadC [Maritimibacter alkaliphilus HTCC2654] gi|84666888|gb|EAQ13359.1| Putative Flp pilus assembly protein TadC [Rhodobacterales bacterium HTCC2654] Length = 329 Score = 71.3 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 4/161 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +K I+ R A+ FPNALD++ S AG+ A+ + S + EF Sbjct: 169 LKRKIRARQAEIEAGFPNALDLLQISTEAGMGFDAAMTRVGQSLATVSPAISEEFLLCQA 228 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++++ M M + EVS F+ V+S + G ++++AL + +R+ + MKA Sbjct: 229 EILASRDRRQALADMAERMGVAEVSAFAQVVSQSMEYGTSIAKALNAYAAEMREMREMKA 288 Query: 118 KVQALSMEAKASAWI-IGSLPFCVSTLVYFTSPGYMNVLIN 157 +A + + S + + LP + T Y++V + Sbjct: 289 IEKANRLPVQMSGVMSVMMLPALFLITLGPTVIRYLSVFGD 329 >gi|323499916|ref|ZP_08104875.1| Flp pilus assembly protein TadC [Vibrio sinaloensis DSM 21326] gi|323315157|gb|EGA68209.1| Flp pilus assembly protein TadC [Vibrio sinaloensis DSM 21326] Length = 314 Score = 71.3 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 73/155 (47%), Gaps = 5/155 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + +++KKR ++ P+ALD++V +GL S A+ + + S E V Sbjct: 154 LNYVVKKRQSRIRGGVPDALDLLVVCTESGLGFSAALRRVADELMISHPDFADELDTVCV 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ +S++ +V ++E++ T++S S++GG+LS+ L + RD++N + Sbjct: 214 KIKAGVEMSDAFEDLVERTGIKELAGLVTMLSHASRIGGSLSQTLREYTEDFRDKRNQEI 273 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 + A + K ++ + C + P + Sbjct: 274 EEIAAKIPTKMIFPLLLFIWPC--FFIVAIGPSML 306 >gi|147677482|ref|YP_001211697.1| type II secretory pathway, component PulF [Pelotomaculum thermopropionicum SI] gi|146273579|dbj|BAF59328.1| type II secretory pathway, component PulF [Pelotomaculum thermopropionicum SI] Length = 402 Score = 71.3 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 56/161 (34%), Gaps = 7/161 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59 + KR K D + + AG+P++ + + QS + + + Sbjct: 51 LNLFKAKRKVKLPDVL-FFTRQLAAMLAAGIPLTRCLNTLSKQSENASLSDIASEMARNV 109 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G++LSE++ S + ++GG++ E L L+ L K ++ + Sbjct: 110 EAGMNLSEALKAYPE-----VFSAMYVDMVRAGEIGGSMEEMLNRLADQLERDKRLRDSI 164 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 ++ + + + T V G+ + P Sbjct: 165 RSATFYPATVMAFALLVVLVMLTFVVPVFAGFFPAGMELPL 205 >gi|299065324|emb|CBJ36493.1| General Secretory Pathway protein F, type II secretion system [Ralstonia solanacearum CMR15] Length = 403 Score = 71.3 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 24/178 (13%), Positives = 60/178 (33%), Gaps = 8/178 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65 KR + + + + AGLP+ +A+A + Q+ V + G SL Sbjct: 59 KRLSPQENAL--VTRQLASLLVAGLPLDEALAALADQAERPYVHELLASIRAEVVGGSSL 116 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S ++S+ R + + + GNL L+ L+ + R + +K++ Sbjct: 117 SVALSQHPR-----DFPDIYRALVSAGEHSGNLGLVLSRLADYIESRNALTSKIKLAFTY 171 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + ++ + + V ++ + + + + ++ Sbjct: 172 PAIVTVVAFAIVIFLLSYVVPQVVSVFANTKQKLPTLTIIMLWLSDFVRNWGWLAAIV 229 >gi|187930467|ref|YP_001900954.1| general secretion pathway protein F [Ralstonia pickettii 12J] gi|187727357|gb|ACD28522.1| general secretion pathway protein F [Ralstonia pickettii 12J] Length = 403 Score = 71.3 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 64/181 (35%), Gaps = 14/181 (7%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65 KR + + + + AGLP+ +A+A + Q+ V + G SL Sbjct: 59 KRLSAQENAL--VTRQLASLLVAGLPLDEALAALADQAERAYVGELLAAIRAEVLGGSSL 116 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S ++++ + + + + GNL L+ L+ + R + +K++ Sbjct: 117 SVALAQHPK-----DFPDIYRALVSAGEHSGNLGLVLSRLADYIESRNALTSKIKLAFTY 171 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF---MLIGIMVMRLM 182 + V L+ + P ++V N + L + + + + + Sbjct: 172 PA---IVTVVAFAIVIFLLSYVVPQVVSVFANTKQKLPTLTIIMLWLSDFVRNWGWLAAI 228 Query: 183 I 183 + Sbjct: 229 V 229 >gi|297537794|ref|YP_003673563.1| Type II secretion system F domain-containing protein [Methylotenera sp. 301] gi|297257141|gb|ADI28986.1| Type II secretion system F domain protein [Methylotenera sp. 301] Length = 405 Score = 71.3 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 18/167 (10%), Positives = 50/167 (29%), Gaps = 6/167 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71 D + ++AG+P+ + ++ S+ V + G S+S + + Sbjct: 65 DKDITLFTRQLATMMKAGVPLLQSFDIVGKGHSNPAVAKLLLDIKSDVETGSSMSAAFRK 124 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + G L L L+ +K+K+++ + Sbjct: 125 YPL-----YFDALFCNLIGAGEQAGILDTLLDRLATYKEKILAIKSKIKSALFYPISIIV 179 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + + V + + L+ +A + + + Sbjct: 180 VAFVIVAVIMIFVIPAFKTLFDGFGAELPAPTLIVMAISDIFVQWWW 226 Score = 40.5 bits (93), Expect = 0.096, Method: Composition-based stats. Identities = 20/142 (14%), Positives = 42/142 (29%), Gaps = 11/142 (7%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLS 66 R A + AG+P+ +A+ + G S + V ++V G SL+ Sbjct: 268 RKATIAR----WARTLATMFSAGVPLVEALDSVAGASGNRVYYDATKKVQSEISTGTSLT 323 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ ++ + G L L+ ++ + A ME Sbjct: 324 VAMQN------TDVFPNMVLQMTAIGEESGALDAMLSKVADFFEAEVDDAVDALASLMEP 377 Query: 127 KASAWIIGSLPFCVSTLVYFTS 148 + + V + Sbjct: 378 VIMVVLGVLIGGLVIAMYMPIF 399 >gi|170725110|ref|YP_001759136.1| type II secretion system protein [Shewanella woodyi ATCC 51908] gi|169810457|gb|ACA85041.1| type II secretion system protein [Shewanella woodyi ATCC 51908] Length = 287 Score = 71.3 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 3/158 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + L KKR A + P LD + S+ AGL ++ A++ V + P+R EF +VI Sbjct: 131 LNDLRKKRQALIVKSLPVYLDYLTMSIEAGLNMTGAISQAVERGPSGPLRIEFEKVIRDM 190 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G+S ++S M + + E++ + ++ + G +L + L S R + +A+ Sbjct: 191 RAGMSRAQSFRNMAERVQITEINSLVSALAQAEKTGASLGQTLRVQSDQRRIERFQRAEK 250 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 +AL K +I + ++ F P M + Sbjct: 251 KALEAPVKLVFPLIVFIFPVTFMILAF--PIAMKFMYE 286 >gi|294139061|ref|YP_003555039.1| MSHA biogenesis protein MshG [Shewanella violacea DSS12] gi|293325530|dbj|BAJ00261.1| MSHA biogenesis protein MshG [Shewanella violacea DSS12] Length = 406 Score = 71.3 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 20/164 (12%), Positives = 48/164 (29%), Gaps = 6/164 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 + + R+G+P+ A+A + + +R + E G LS + Sbjct: 65 ELQIFSRQMYSLTRSGIPILRAIAGLSETTHSQRMRDALNDISEQLTAGRPLSSA----- 119 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G L +A LS + + + +++A I Sbjct: 120 MNHHQDVFDALFVSMVHVGENTGKLEDAFMQLSGYIEREQETRRRIKAAMRYPIFVLIAI 179 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++ +V + D L + + + + Sbjct: 180 TIAMVILNIMVIPKFADMFSRFGADLPWATKLLIGTSSLFVNYW 223 Score = 41.6 bits (96), Expect = 0.043, Method: Composition-based stats. Identities = 11/132 (8%), Positives = 37/132 (28%), Gaps = 5/132 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + AG+P++ A++++ + + + + S + Sbjct: 269 LSRYCRSFSMMLSAGVPMTQALSLVADSVDNAYMHDRIVAMRR-----GIESGDSMLRVS 323 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 Q + + + G + + L + + + K +E ++ G Sbjct: 324 NQSQLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGFVAGI 383 Query: 136 LPFCVSTLVYFT 147 + + Sbjct: 384 VLILALGIYLPM 395 >gi|187925907|ref|YP_001897549.1| general secretion pathway protein F [Burkholderia phytofirmans PsJN] gi|187717101|gb|ACD18325.1| general secretion pathway protein F [Burkholderia phytofirmans PsJN] Length = 405 Score = 71.3 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 60/183 (32%), Gaps = 12/183 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + + +R + + AGLP+ +A+AV+ QS D +R + Sbjct: 59 LGRRLSQREQAI------LTRQLASLLIAGLPLDEALAVLTEQSERDYIRELMASIRAEV 112 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SL+ ++++ + + + + G L L+ L+ + R +K K+ Sbjct: 113 LGGHSLANALTQHPK-----DFPEIYRALVAAGEHTGKLGLVLSRLADYIEQRNALKQKI 167 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 I + + + V ++ +A + + Sbjct: 168 VLAFTYPTIVTIIAFGIVTFLLSYVVPQVVNVFASTKQQLPFLTIMMMALSGFVRNWWWA 227 Query: 180 RLM 182 L+ Sbjct: 228 MLI 230 Score = 38.6 bits (88), Expect = 0.42, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ S+ E I G SLS ++ + P Sbjct: 274 FASTLGILTAAGVPILRALQAAAETLSNNAMRENIDDAIVRVREGTSLSRALGNTKTFPP 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+++ L + + +E + G + Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAADGEARELERRTMFLTSLLEPLLILAMGGVVL 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 VIVLAVMLPI 397 >gi|294624334|ref|ZP_06703034.1| fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601366|gb|EFF45403.1| fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 419 Score = 70.9 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 57/171 (33%), Gaps = 6/171 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + +++G+P+ ++ +I + +R ++ G SL E+IS+ Sbjct: 79 KDIAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMRKMVGQIRTDIEGGSSLHEAISKH 138 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L ++ + + +K K++ + Sbjct: 139 PVQ-----FDELYRNLVRAGEGAGVLETVLDTVANYKENIEALKGKIKKALFYPAMVVAV 193 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + V L + + VAA+ +I + L++ Sbjct: 194 ALIVSAILLIFVVPQFEEVFKGLGAELPAFTQMIVAASRFMISYWWLMLLV 244 Score = 37.8 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 16/131 (12%), Positives = 47/131 (35%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77 + +AG+P+ +A+ ++ G + + V E R+ + +G ++ ++ ++ + Sbjct: 288 FARTTAVTFKAGVPLVEALGIVAGATGNKVYEEAVLRMRDDVSVGYPVNMAMKQVNLFPH 347 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++ + G L L ++ N + +E +I + Sbjct: 348 M------VIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGTIVG 401 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 402 GMVIGMYLPIF 412 >gi|117928944|ref|YP_873495.1| type II secretion system protein [Acidothermus cellulolyticus 11B] gi|117649407|gb|ABK53509.1| type II secretion system protein [Acidothermus cellulolyticus 11B] Length = 311 Score = 70.9 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 64/154 (41%), Gaps = 2/154 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R+ + L +FP +++ +V AG + A+ +V + EF R + Sbjct: 156 LSREAQRRSRRMLAEFPTVAELLALAVGAGESPAAALERVVRVCRGELSVEFARALSEAR 215 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL ++ + PL +S F + V Q G L++ L + +R+ K + Sbjct: 216 TGGSLVTALENLAARNPLDIMSRFVDGMIVAMQRGTPLADVLRAQASDVRE--AAKRSLL 273 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + + TL++ P ++++ Sbjct: 274 DIGGRKEIGMMVPVVFLILPITLLFALFPSFVSL 307 >gi|116747569|ref|YP_844256.1| type II secretion system protein [Syntrophobacter fumaroxidans MPOB] gi|116696633|gb|ABK15821.1| type II secretion system protein [Syntrophobacter fumaroxidans MPOB] Length = 405 Score = 70.9 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 21/169 (12%), Positives = 51/169 (30%), Gaps = 7/169 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 + + + AGLP+ + ++ Q + + ++V + G +LS++I + Sbjct: 62 EKELVIFVRQFSTMIDAGLPLVQCLEILQEQQENSTFKRIIKKVKKDVEEGATLSDAIRK 121 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + ++GG L L L+ + +K +V+ Sbjct: 122 HPK-----VFDNLFVNLVAAGEVGGILDVILNRLAAYIEKVAKLKRRVKGAMTYPAIVVT 176 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM-VM 179 I + + V G L + + + Sbjct: 177 IALLVVAVILIYVIPVFAGLFREAGAKLPAMTLAVMNLSDFAQNYFHWI 225 Score = 38.6 bits (88), Expect = 0.37, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 38/130 (29%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+P+ D + ++ S + V + RV + P+ Sbjct: 271 FTRTLGTMLASGVPILDGLDIVAATSGNMVIEKAIRVARNAISEGRPIAEPLSETKVFPM 330 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 T + + G L L ++ D + +E ++ ++ Sbjct: 331 -----MVTQMIAVGEATGALDTMLGKIADFYDDEVDTAVDALTSLLEPMLIVFLGVTIGG 385 Query: 139 CVSTLVYFTS 148 + + Sbjct: 386 LLVAMYLPIF 395 >gi|302521143|ref|ZP_07273485.1| integral membrane protein [Streptomyces sp. SPB78] gi|302430038|gb|EFL01854.1| integral membrane protein [Streptomyces sp. SPB78] Length = 351 Score = 70.9 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 19/184 (10%), Positives = 66/184 (35%), Gaps = 2/184 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++ + ++ + + ++ + + A+ ++ +R +++ Sbjct: 126 REERTQMRRVEALATWTESLRDTIAGAVGLEQAIPASARAAAPALRPHLEALVDRLRART 185 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L +++ + + + + G L + L L++ R+ +M+ +V A Sbjct: 186 PLPDALQFLADEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQ 245 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + S I+ ++ + + +++ N P G ++L +G +R + Sbjct: 246 RAATRRSVQIVVAVSVLFVLGLAIFNKDFVSP-YNSPVGQVVLAGVCGLFALGFWWLRKL 304 Query: 183 INFD 186 + Sbjct: 305 STIE 308 >gi|300704935|ref|YP_003746538.1| tad secretion system, secretion accessory protein [Ralstonia solanacearum CFBP2957] gi|299072599|emb|CBJ43949.1| Tad secretion system, secretion accessory protein [Ralstonia solanacearum CFBP2957] Length = 314 Score = 70.9 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 72/148 (48%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 ++ I++R + FP++LD+I+ V AGL + AV +V + + E+ + Sbjct: 149 LRLKIRRRQRDIFEAFPDSLDLIMVCVEAGLGLDAAVLRVVEEMRTARPAMAEEYELLTL 208 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL+ +++ + +++VS ++ + G +++E+L S +LR +++M A Sbjct: 209 ELRAGLAREKALRNLAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRHMLA 268 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A + K +I + + ++ Sbjct: 269 EERAAKIGTKILFPLIFCIFPSLFVVLL 296 >gi|210629925|ref|ZP_03296172.1| hypothetical protein COLSTE_00055 [Collinsella stercoris DSM 13279] gi|210160742|gb|EEA91713.1| hypothetical protein COLSTE_00055 [Collinsella stercoris DSM 13279] Length = 254 Score = 70.9 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 77/171 (45%), Gaps = 1/171 (0%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P A + S+ +GL ++ A+ + G+S +PVR+EF G+S +++ +V Sbjct: 84 MPEAFGALAFSLGSGLSLAQAMQYVGGRSEEPVRTEFLHASALMTCGVSSVDALDELVTR 143 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + V + G +L+ L+ + ++ +R + ++ + + + SA ++ Sbjct: 144 LNAPALDLVVLALKVSRKTGASLTGLLSEAAGLVGERIELARNLEVKTAQVRMSARLVAG 203 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +P + + S + + G L VA A + +V+R ++ D Sbjct: 204 MPVIMVGFLSLVSRDFRAGV-ATGPGIGSLAVALALNIAAWLVIRKIMQVD 253 >gi|159901127|ref|YP_001547374.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC 23779] gi|159894166|gb|ABX07246.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC 23779] Length = 301 Score = 70.9 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 66/145 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + IKKR L P+ALD++ SV AGL A+ + + + + EFRR + Sbjct: 145 LGRQIKKRQKLILKALPDALDLLSISVTAGLGFDAALQRVAEKWDNELCREFRRALSDIR 204 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG E+ M +++++ F + + QLG ++ + L S LR R+ +A+ + Sbjct: 205 LGTQRHEAFRSMTVRTGVEDLTSFVSAVIQADQLGVSMGKMLKIQSDQLRLRRRQRAEEE 264 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145 A K ++ + + ++ Sbjct: 265 AQKAPIKMLFPLVFLIFPSMFVVIL 289 >gi|32477852|ref|NP_870846.1| protein secretion system or pilus assembly related protein TadB [Rhodopirellula baltica SH 1] gi|32448409|emb|CAD77924.1| probable protein secretion system or pilus assembly related protein TadB [Rhodopirellula baltica SH 1] Length = 297 Score = 70.9 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 40/177 (22%), Positives = 86/177 (48%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R ++ + LD+++ +R+G S A+A ++ P+R + + LG S S Sbjct: 118 RLSRIERQLIDLLDMMIPMLRSGAGASAALAAASEVTASPLRDQIHWCVRRIQLGDSGSS 177 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + R MP+ + FST +SV + GG+L+ LA+++R+ RDR+ + ++++ +++ Sbjct: 178 VFRELARRMPIDAMELFSTTMSVHWETGGSLAPVLASVARVARDRQEVARRIRSNIAQSQ 237 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 S + L + V+ +++ P +M + G + +GI+ M + Sbjct: 238 FSTIAVLLLIYFVALVLWLDRPEWMKEFASSSLGSAAIAATIVLQAVGIIWMNAISR 294 >gi|294666986|ref|ZP_06732215.1| pilC, fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603275|gb|EFF46697.1| pilC, fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 418 Score = 70.9 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 22/173 (12%), Positives = 55/173 (31%), Gaps = 6/173 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + +++G+P+ A+ +I + ++ ++ G SL E+ISR Sbjct: 79 KDIAFFSRQMATMMKSGVPIVGALEIIGEGHKNPRMKKMVGQIRADIEGGSSLYEAISRH 138 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L ++ + + +K K++ + Sbjct: 139 PVQ-----FDDLYRNLVRAGEGAGVLETVLDTVANYKENIEALKGKIKKALFYPAMVMAV 193 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + V + + VAA+ ++ L+ + Sbjct: 194 AIIVSGILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWFMLLASV 246 Score = 37.0 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 16/131 (12%), Positives = 48/131 (36%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77 + +AG+P+ +A++++ G + + V E R+ + +G ++ ++ ++ + Sbjct: 288 FARTTAVTFKAGVPLVEALSIVAGATGNKVYEEAVLRMRDDVSVGYPVNMAMKQVNLFPH 347 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++ + G L L ++ N + +E +I + Sbjct: 348 M------VIQMTSIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIVG 401 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 402 GMVIGMYLPIF 412 >gi|254478240|ref|ZP_05091621.1| Bacterial type II secretion system protein F domain [Carboxydibrachium pacificum DSM 12653] gi|214035836|gb|EEB76529.1| Bacterial type II secretion system protein F domain [Carboxydibrachium pacificum DSM 12653] Length = 301 Score = 70.9 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 77/181 (42%), Gaps = 3/181 (1%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +L ++R K + F + + ++ ++ + A + P++ RV+ LG Sbjct: 117 YLGRRRIRKTEEQFRDFVKMLGAYLKMVPSFAGAFIKAAEEVESPLKEHTDRVVRKFELG 176 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L E++ + + + + ++ I ++ +LS ++ L +R M +V ++ Sbjct: 177 EDLEEALKEL-KSVESTYIKAWADSIIFAVRMKSDLSRVCERTAKKLYERIKMANRVASM 235 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRL 181 +++AK+ + + + SP ++ + P G +++ A I + +++ Sbjct: 236 TVQAKSLMVSLAGMMAFMIVSTMSVSPDFVRA-FSTPIGKVVVAYTALSYFISTLYILKR 294 Query: 182 M 182 + Sbjct: 295 I 295 >gi|217967264|ref|YP_002352770.1| type II secretion system protein [Dictyoglomus turgidum DSM 6724] gi|217336363|gb|ACK42156.1| type II secretion system protein [Dictyoglomus turgidum DSM 6724] Length = 409 Score = 70.9 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 53/154 (34%), Gaps = 6/154 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 D + AGL +S + ++ QS +R + + G SLSE+ ++ Sbjct: 71 DLTVFTRQFATMINAGLSLSTCLNILSEQSESKALRQILKEIQRMVDEGSSLSEAFAKFP 130 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + ++ G L E L L+ L ++ ++ K+++ I Sbjct: 131 N-----VFSPLYINMVKAAESAGTLDETLERLAVTLEKQQELRRKIKSAMTYPVIVLIIA 185 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 F + T + G + L+ + Sbjct: 186 IGAGFGMLTFLVPIFAGMFESMGAQLPLPTLVLL 219 Score = 41.3 bits (95), Expect = 0.064, Method: Composition-based stats. Identities = 13/134 (9%), Positives = 37/134 (27%), Gaps = 5/134 (3%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 N + VR G+P+ A+ + + + V + + + Sbjct: 277 NFATTLAAQVRTGVPILQALQLAGQTAGNSVFRKAIDLTRQRVREGERI-----APVLKE 331 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G+L + L ++ + +E ++ G + Sbjct: 332 TKVFPPMVVHMISIGEESGSLEQMLNKIAEFYEGEVAAAVESLTSLIEPLMMVFVGGIVG 391 Query: 138 FCVSTLVYFTSPGY 151 + L + Sbjct: 392 GMLIALYLPIFTMF 405 >gi|222479461|ref|YP_002565698.1| type II secretion system protein [Halorubrum lacusprofundi ATCC 49239] gi|222452363|gb|ACM56628.1| type II secretion system protein [Halorubrum lacusprofundi ATCC 49239] Length = 715 Score = 70.9 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 19/143 (13%), Positives = 53/143 (37%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R + P+ LD + AG V +V + + + + + +R G + Sbjct: 479 KRRVRRIESAVPDFLDRLASVNEAGTSVVGSVRRVADSNLEALTDDLQRTRRDIDWGADV 538 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ R+ R + S +I+ + G++ L + R +++ + + + + Sbjct: 539 GTALRRLERRVRSPMTSRAVALITNAMRASGDVGPVLRIAADESRATWSLRRERRQVMLT 598 Query: 126 AKASAWIIGSLPFCVSTLVYFTS 148 +I + + + + Sbjct: 599 YLIVIYISFLVFLGIIASLSVSF 621 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 23/183 (12%), Positives = 63/183 (34%), Gaps = 8/183 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIET 58 + R A+ P + + R+G+P + + +E + Sbjct: 157 LDQRAHARGAEIDATLPRTVAFMYALSRSGMPFPRVMDTLAENEAVYGEAATELSVAVRD 216 Query: 59 QHLGLSLS-ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + ++ R R P +++ F+ ++ G +S L++ + ++ K Sbjct: 217 MNAFGTDALTALQRTSRRTPSDDLADFAENLASVLGTGQPISTFLSDQYELYQEEAESKQ 276 Query: 118 KVQALSMEAKASAWIIGSL--PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + + A A++ + P T++ + L P +++ + G Sbjct: 277 QQYLELLSTFAEAYVTALVAGPLFFITILVVIGLVLEDTL---PLLRVVVYLGVPLATFG 333 Query: 176 IMV 178 +V Sbjct: 334 FVV 336 >gi|163781562|ref|ZP_02176562.1| fimbrial assembly protein PilC [Hydrogenivirga sp. 128-5-R1-1] gi|159882782|gb|EDP76286.1| fimbrial assembly protein PilC [Hydrogenivirga sp. 128-5-R1-1] Length = 415 Score = 70.9 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 59/179 (32%), Gaps = 13/179 (7%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 D + V AG+ + DA+ ++ Q + + V + G+S+SE++S+ Sbjct: 74 DRDIALFCRQLGAMVNAGVGIIDALDIVAEQMPNKKLAEAVAEVAKEVSEGMSMSEAMSK 133 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P + + G L AL S +K+K+++ + Sbjct: 134 RANIFP-----ELVVNLVAVGEETGELDRALLRASEYYEKLAMIKSKIKSAAFYPVFVLV 188 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-------AFMLIGIMVMRLMI 183 I + + + T + + + +IG +V+ ++ Sbjct: 189 IATVIVTGILYFLVPTFAQIYSGFGAALPTPTQILINMSNALRENILYIIGGIVVFSVV 247 Score = 42.8 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 14/128 (10%), Positives = 38/128 (29%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + +G+ + A+ V + + V E +E ++ +++ + Sbjct: 286 RTMATLFSSGVSIERALEVAGKVTGNLVIQE---AVEKVRKEVTEGQAMWSSMEKTGQ-- 340 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + G L E L ++R D + + +E + + + Sbjct: 341 FPKLVVAMVKVGEETGRLDEMLDTIARFYEDEVDRTVEGLITLIEPMLIVVLGSIVGGIL 400 Query: 141 STLVYFTS 148 L Sbjct: 401 IALYMPIF 408 >gi|186477816|ref|YP_001859286.1| general secretion pathway protein F [Burkholderia phymatum STM815] gi|184194275|gb|ACC72240.1| general secretion pathway protein F [Burkholderia phymatum STM815] Length = 405 Score = 70.9 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 60/184 (32%), Gaps = 12/184 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + + +R + + AGLP+ +A++V+ QS D +R + Sbjct: 59 LGRKLSQREQAI------LTRQLASLLIAGLPLDEALSVLTEQSERDYIRELMAAIRAEV 112 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SL+ ++S+ + + + + G L L+ L+ + R +K K+ Sbjct: 113 LGGHSLANALSQHPK-----DFPDIYRALVAAGEHTGKLGLVLSRLADYIEQRNALKQKI 167 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 I + + + V ++ +A + + Sbjct: 168 ILAFTYPTIVTIIAFGIVTFLLSYVVPQVVNVFASTKQQLPFLTIMMMALSGFVRNYWWA 227 Query: 180 RLMI 183 L+ Sbjct: 228 MLIA 231 Score = 35.5 bits (80), Expect = 3.1, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 38/130 (29%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ S+ +R I G SLS ++ + P Sbjct: 274 FASTLGILTAAGVPILRALQAASETLSNRAMRDNIDDAIVRVREGTSLSRALGNTKTFPP 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+++ L + + +E + G + Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAAEGEARELERRTMFLTSLLEPLLILAMGGVVL 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 VIVLAVMLPI 397 >gi|330890704|gb|EGH23365.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. mori str. 301020] Length = 406 Score = 70.9 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 20/180 (11%), Positives = 51/180 (28%), Gaps = 18/180 (10%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73 D + ++AG+P+ + +I + +P + + G S + ++ + Sbjct: 67 DIAFFSRQMATMMKAGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRQKP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G L L ++ + +KAK++ A + Sbjct: 127 E-----YFDDLFCNLVDAGEQAGALESLLDRVASYKEKTERLKAKIKKAMTYPTAVLIVA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA------------AFMLIGIMVMRL 181 + + V + L+ +A A I + + Sbjct: 182 FIVSGILLIKVVPQFQSVFAGFNAELPAFTLMVIALSEVVQQWWLAIVALFFISFFMFKR 241 >gi|90412171|ref|ZP_01220177.1| hypothetical Flp pilus assembly protein TadC [Photobacterium profundum 3TCK] gi|90326895|gb|EAS43280.1| hypothetical Flp pilus assembly protein TadC [Photobacterium profundum 3TCK] Length = 283 Score = 70.9 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 62/156 (39%), Gaps = 4/156 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI--ET 58 + K K P LD++ V+ G+ + A+ + + + + Sbjct: 124 LSMRKKALILKTSRQLPYMLDMMSVCVQTGMTIEAALTYLSIELEAFDKDLCFHIKKTAD 183 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L +++ + +P +V F+ + Q G +++ L+ L+ +R + + + Sbjct: 184 GARVKGLEKALIELSERIPTPDVRSFTLTLIQNLQYGTSIANVLSALAEDMRKMQVLTME 243 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + AK S +I + F + L+ +PG M + Sbjct: 244 EKIGKLAAKMSVPLILLIMFPIVILI--LAPGMMQM 277 >gi|170728734|ref|YP_001762760.1| type II secretion system protein [Shewanella woodyi ATCC 51908] gi|169814081|gb|ACA88665.1| type II secretion system protein [Shewanella woodyi ATCC 51908] Length = 406 Score = 70.9 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 20/165 (12%), Positives = 49/165 (29%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 D+ + R+G+P+ A+A + + ++ + E G LS + Sbjct: 64 DELQIFSRQMYSLTRSGIPILRAIAGLSETTHSQRMKDALNDISEQLTSGRPLSSA---- 119 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L +A LS + + + +++A Sbjct: 120 -MNHHPDVFDSLFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRIKAAMRYPIFVLMA 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 I ++ +V + D L + + + + Sbjct: 179 ITLAMVILNIMVIPKFAEMFSRFGADLPWATKLLIGTSNLFVNYW 223 Score = 43.2 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 10/132 (7%), Positives = 36/132 (27%), Gaps = 5/132 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + AG+P++ A++++ + + + + S + Sbjct: 269 LSRYCRSFSMMLSAGVPMTQALSLVADAVDNAYMHDRIVAMRR-----GIESGDSMLRVC 323 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + G + + L + + + K +E ++ G Sbjct: 324 NQSHLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGFVAGI 383 Query: 136 LPFCVSTLVYFT 147 + + Sbjct: 384 VLILALGIYLPM 395 >gi|301629343|ref|XP_002943802.1| PREDICTED: general secretion pathway protein F-like [Xenopus (Silurana) tropicalis] Length = 308 Score = 70.9 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 62/176 (35%), Gaps = 14/176 (7%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74 + V +GLP+ A+ + ++ D + + G S + ++++ R Sbjct: 71 LAVWTRQLAGLVASGLPLERALTALADEAEDERQHHLVAALRAEVNAGSSFARALTQHPR 130 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 E S + + G+L L L+ L +R+ ++AK+ ++ + Sbjct: 131 -----EFSDIYCAVIGAGEASGSLGLVLERLADDLEERQQLRAKIIGAALYPA---IVTV 182 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-----IGIMVMRLMINF 185 V LV + P V R L VA + G +++ ++ Sbjct: 183 VALVIVLFLVGYVVPQVAGVFAGTKRALPWLTVAMMAVSDTVRHYGWLMLIALVLI 238 >gi|283777928|ref|YP_003368683.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283436381|gb|ADB14823.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 326 Score = 70.9 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 65/147 (44%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + KR + + LD++V + G+ + A++ + + + +E V+ Sbjct: 155 LAYYRAKRQRQLRTSLADFLDLMVTCLEGGVGMQAAISQVADELRTPHPILATELLVVLR 214 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G S+ +++ + L+E+ +T + + G +++A+ LS +LR ++ +A Sbjct: 215 EVEVGRSIEVALAHLAERTGLEELRSLATFVQQAQRFGSTMADAMRELSDMLRTQRETRA 274 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + +A K + + V ++ Sbjct: 275 EERAQKASVKILIPTLLFIFPTVFVVL 301 >gi|257053876|ref|YP_003131709.1| type II secretion system protein [Halorhabdus utahensis DSM 12940] gi|256692639|gb|ACV12976.1| type II secretion system protein [Halorhabdus utahensis DSM 12940] Length = 802 Score = 70.9 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 16/144 (11%), Positives = 50/144 (34%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + +R + P L+ + AG+ +++ + + E R+ Sbjct: 461 VREIYSRRIDRIEAATPELLERLASLNEAGMSFVESLDRVRDSDLGVLTDEVDRIWTDIS 520 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G + +++ R + + ++ T++ + G L L S R ++ + + Sbjct: 521 MGANSPDALRRFGQRVRTASIARVVTLLMHAMRASGRLGPVLRIASSQARSDLELRRERR 580 Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144 ++ + + V Sbjct: 581 QQMFTYLVVIYVSFFVFLVIIFAV 604 Score = 44.0 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 21/182 (11%), Positives = 51/182 (28%), Gaps = 5/182 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQHLGL-S 64 R + P + R GL D + + + E + + Sbjct: 162 RRRGINEALPRTVAFTYALSRGGLAFPDVMRTLGRNREIYGDAADEVSVAVREMDVFGTD 221 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + +I R P F ++ G ++ L + L++ + + + Sbjct: 222 MISAIRRTAHRSPSDTFRTFGENLASVLASGQHIPAFLEDQYDRLQEEAEQRQEEVLELL 281 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A A++ + + L + + LL + + V+ L+ Sbjct: 282 ATIAEAYVTTLVAGVLFLLTILLV--FGLTVTETLPFLQLLTYLIIPLSNALFVVFLVQK 339 Query: 185 FD 186 + Sbjct: 340 LE 341 >gi|225851038|ref|YP_002731272.1| type IV pilus biogenesis protein PilC [Persephonella marina EX-H1] gi|225646001|gb|ACO04187.1| type IV pilus biogenesis protein PilC [Persephonella marina EX-H1] Length = 400 Score = 70.9 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 22/156 (14%), Positives = 56/156 (35%), Gaps = 6/156 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 D + + AG+ +++A+ ++ Q + + + V E G+SL++++ + Sbjct: 61 EKDLAIFTRQLGAMISAGVGIAEALEILSEQIPNKTLADALKSVKEDVMAGMSLAKAMEK 120 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P F ++ ++ GNL L + +K K+ + S Sbjct: 121 HPKAFP-----EFLVNLTAAAEESGNLDVILKRATVYYEKIAAIKRKLISASWYPAMVVV 175 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 I + + T + T + ++ + Sbjct: 176 IATVIVLGILTFIVPTFAQLYKGMGSELPFLTQFLI 211 Score = 40.1 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 42/130 (32%), Gaps = 6/130 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + V G+P+ A+ + + + V + ++ + E ++ + + Sbjct: 270 FSRTLSTLVSGGVPIIRALEIASTVAGNVV------IEKSINKTKDEVEKGKQIYQSLDP 323 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G L E L ++ D + + ++E +I G + Sbjct: 324 KLFPPIFIAMVRVGENTGRLDEMLDTIADFFEDEVDRAVEGLLSTIEPLLMVFIGGIVGV 383 Query: 139 CVSTLVYFTS 148 + L Sbjct: 384 ILVGLYLPIF 393 >gi|317124421|ref|YP_004098533.1| type II secretion system F domain [Intrasporangium calvum DSM 43043] gi|315588509|gb|ADU47806.1| Type II secretion system F domain [Intrasporangium calvum DSM 43043] Length = 314 Score = 70.9 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 57/154 (37%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R + L +FP +++ +V AG + A+ + S + E RR + Sbjct: 159 LSRAARRREQRMLAEFPTVAELLALAVSAGEGATGALERVCRLSDGELADELRRCLADAR 218 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +L ++ + L +S F I V + G L++ L ++ +R+ Q Sbjct: 219 AGANLPTALQGLADRTGLPSLSRFVDGIVVAVERGTPLADVLRAQAQDVREDGRRVLMEQ 278 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 E ++ + + ++ Sbjct: 279 GGKREIVMMVPVVFLILPVTVLFAIYPGLSFLRF 312 >gi|318062247|ref|ZP_07980968.1| integral membrane protein [Streptomyces sp. SA3_actG] gi|318080605|ref|ZP_07987937.1| integral membrane protein [Streptomyces sp. SA3_actF] Length = 351 Score = 70.9 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 19/184 (10%), Positives = 66/184 (35%), Gaps = 2/184 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++ + ++ + + ++ + + A+ ++ +R +++ Sbjct: 126 REERTQMRRVEALATWTESLRDTIAGAVGLEQAIPASARAAAPALRPHLEALVDRLRART 185 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L +++ + + + + G L + L L++ R+ +M+ +V A Sbjct: 186 PLPDALQFLADEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQ 245 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + S I+ ++ + + +++ N P G ++L +G +R + Sbjct: 246 RAATRRSVQIVVAVSVLFVLGLAIFNKDFVSP-YNSPVGQVVLAGVCGLFALGFWWLRKL 304 Query: 183 INFD 186 + Sbjct: 305 STIE 308 >gi|114705450|ref|ZP_01438358.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506] gi|114540235|gb|EAU43355.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506] Length = 328 Score = 70.9 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 64/159 (40%), Gaps = 4/159 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +++ KR A +P+ALD+++ V +G + + + + S + E Sbjct: 170 LRNAATKRQASIQRAWPDALDLLLICVESGKSIEASFRKVAEEIGIQSIALAEELMLTCA 229 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + ++ L+ V T ++ + G + AL +++ RD + A Sbjct: 230 ELSYLPERRTAYDNLILRTDLEGVRATMTALTQAERYGTPIGSALRTMAQENRDLRMNAA 289 Query: 118 KVQALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A ++ K I+ LP ++ ++ + ++ + Sbjct: 290 EKKAAALPPKLTVPMIVFFLPVLMAIILAPAAISMIDAM 328 >gi|220922536|ref|YP_002497838.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] gi|219947143|gb|ACL57535.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] Length = 303 Score = 70.9 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 67/161 (41%), Gaps = 3/161 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIET 58 + + + + FP+ LD++V V AGL + A + + +R + Sbjct: 143 VSRRQRLQKEAYRSAFPDMLDLLVVCVDAGLSLEAAFDRVGSEMDESGALRVNLAIMASE 202 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G + + + + + E F+ ++ +LG ++S++L S +R+++ M+A+ Sbjct: 203 LRNGRGFVDGLQGLAERLDIDEARSFAILLQQSLELGTDISQSLRVYSDEMRNKRMMRAE 262 Query: 119 VQALSMEAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLIND 158 +A ++ K + + P + ++ + VL Sbjct: 263 EKANALPVKIVLPLGAFIFPVILIVVMVPIVIRIIAVLGRS 303 >gi|163751752|ref|ZP_02158970.1| hypothetical putative tight adherence TadC-related transmembrane protein [Shewanella benthica KT99] gi|161328404|gb|EDP99563.1| hypothetical putative tight adherence TadC-related transmembrane protein [Shewanella benthica KT99] Length = 322 Score = 70.9 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 67/158 (42%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++HL +R FP+ALD++V AGL + A+ + + S + SE V Sbjct: 160 LQHLASRRMKNLRAGFPDALDLLVVCCEAGLGLLAALQRVANELAISHASLASELDLVCS 219 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL++ ++ L+++ ++ IS +LG ++ L S RD++ A Sbjct: 220 KVRAGLTIKVALQEFTERTGLEDIKGLNSAISQSIRLGTGIAATLRIFSDEYRDKRLQDA 279 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + QA + K ++ + + P + V+ Sbjct: 280 EEQAAKLAVKMIFPMMLCIWPS--FFIVAVGPAVLKVM 315 >gi|170694277|ref|ZP_02885431.1| general secretion pathway protein F [Burkholderia graminis C4D1M] gi|170140700|gb|EDT08874.1| general secretion pathway protein F [Burkholderia graminis C4D1M] Length = 405 Score = 70.9 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 60/184 (32%), Gaps = 12/184 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + + +R + + AGLP+ +A+AV+ QS D +R + Sbjct: 59 LGRRLSQREQAI------LTRQLASLLIAGLPLDEALAVLTEQSERDYIRELMAAIRAEV 112 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SL+ ++++ + + + + G L L+ L+ + R +K K+ Sbjct: 113 LGGHSLANALTQHPK-----DFPEIYRALVAAGEHTGKLGLVLSRLADYIEQRNALKQKI 167 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 I + + + V ++ +A + + Sbjct: 168 VLAFTYPTIVTIIAFGIVTFLLSYVVPQVVNVFASTKQQLPFLTIMMMALSGFVRNWWWA 227 Query: 180 RLMI 183 L+ Sbjct: 228 VLIA 231 Score = 35.9 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 36/130 (27%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ S+ I G SLS ++ + P Sbjct: 274 FASTLGILTAAGVPILRALQAAAETLSNTAMRGNIDDAIVRVREGTSLSRALGNTKTFPP 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+++ L + + +E + G + Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAADGEARELERRTMFLTSLLEPLLILAMGGVVL 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 VIVLAVMLPI 397 >gi|56477900|ref|YP_159489.1| type IV fimbrial biogenesis protein, pilC [Aromatoleum aromaticum EbN1] gi|56313943|emb|CAI08588.1| type IV fimbrial biogenesis protein,PilC [Aromatoleum aromaticum EbN1] Length = 411 Score = 70.9 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 24/181 (13%), Positives = 54/181 (29%), Gaps = 7/181 (3%) Query: 1 MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAV-IVGQSSDPVRSEFRRVIET 58 ++ R K D + +++G+P+ A + I G + + V Sbjct: 58 VRKQKMSRGHKITDKDIALFTRQLATMMKSGVPLLQAFDIGIKGSGNPSLARLLNEVRTD 117 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G SLS++ +R + + G L L ++ +K K Sbjct: 118 VETGSSLSQAFARHPL-----YFDKLFCNLVAAGEQAGILDGLLDRIATYKEKVLAIKGK 172 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 +++ A + + + V D L+ +A + + Sbjct: 173 IKSAMFYPIAVVVVAAIVVTVIMLFVVPEFKKVFTSFGADLPAPTLMVIAISDAFVAYWY 232 Query: 179 M 179 + Sbjct: 233 I 233 Score = 38.6 bits (88), Expect = 0.39, Method: Composition-based stats. Identities = 18/142 (12%), Positives = 42/142 (29%), Gaps = 11/142 (7%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLS 66 R A + AG+P+ +A+ + G S + V + R++ G SL+ Sbjct: 274 RKATIAR----WTRTLATMFAAGVPLVEALDSVGGASGNHVYVTATRQIQTEVSTGTSLT 329 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + + G L L ++ + + +E Sbjct: 330 VAMQNA------TVFPSMVVQMVSIGEESGQLDSMLGKVADFFEQEVDDAVAGLSTLLEP 383 Query: 127 KASAWIIGSLPFCVSTLVYFTS 148 ++ + V + Sbjct: 384 IIMVFLGVVIGGLVVAMYLPIF 405 >gi|51891530|ref|YP_074221.1| hypothetical protein STH392 [Symbiobacterium thermophilum IAM 14863] gi|51855219|dbj|BAD39377.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 289 Score = 70.9 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 58/145 (40%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + +RT + P + ++ + AGL +++AV + +S + E R + Sbjct: 131 LRRRVSERTRILRRELPRFVHLLATCLEAGLGLTEAVRRVAAESPGLLAGEMLRAVHEMA 190 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + + E+ + + + G +++E L R +R+RK +A+ + Sbjct: 191 AGKPAQRAWRDLTERHESPELKEVVSALQQSHRWGVSIAEQLRFTLRTMRERKQQQAQQK 250 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145 A + ++ + ++ Sbjct: 251 AHEASVRMRVPMVALILMPTIVIIL 275 >gi|237802035|ref|ZP_04590496.1| type II secretion system protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024891|gb|EGI04947.1| type II secretion system protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 405 Score = 70.9 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 16/164 (9%), Positives = 47/164 (28%), Gaps = 4/164 (2%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D + ++AG+P+ + +I + +P ++ + + Sbjct: 67 DIAFFSRQMATMMKAGVPLLQSFDIISEGAENPNMRVLVNSLKQEVSAGN----SFATAL 122 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + G L L ++R + +KAK++ A + Sbjct: 123 RQKPEYFDDLFCNLVDAGEQAGALESLLDRVARYKEKTEKLKAKIKKAMTYPIAVLIVAM 182 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + V L+ + + ++ + Sbjct: 183 IVSGILLIKVVPQFQSVFASFGAQLPTFTLMVIGLSDVVQKWWL 226 Score = 38.6 bits (88), Expect = 0.43, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 43/129 (33%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG+P+ +A+ + G + + V +V + G+ L+ S+ Sbjct: 277 RTLATTFAAGVPLVEALDSVAGATGNVVFKNAVNKVKQDVSTGMQLNFSMRSTG------ 330 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + ++ + G L L ++ D + ME A++ + Sbjct: 331 VFPSLAIQMTAIGEESGALDTMLDKVATYYEDEVDNMVDNLTSLMEPMIMAFLGVIVGGL 390 Query: 140 VSTLVYFTS 148 V + Sbjct: 391 VIAMYLPIF 399 >gi|312621086|ref|YP_003993814.1| type ii/iv secretion system protein tadc,associated with flp pilus assembly [Photobacterium damselae subsp. damselae] gi|311872807|emb|CBX86898.1| Type II/IV secretion system protein TadC,associated with Flp pilus assembly [Photobacterium damselae subsp. damselae] Length = 303 Score = 70.5 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 62/157 (39%), Gaps = 4/157 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 + K K P LD++ V+ G+ + +++ + + R + Sbjct: 146 LAQKSKTLRHKISGQLPYLLDLLAMCVQTGMTIESSMSYLSREMKGFDRDLSHLLTRTND 205 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + L +++ + +P E+ F I Q G ++ L L+ +RD + + + Sbjct: 206 RARIIGLEQALDELYIRVPTNEMRSFVMTIKQSLQYGSSIYNILTTLAADIRDMRMLTLE 265 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + AK S +I + + L+ PG + +L Sbjct: 266 EKIGKLAAKMSIPLILFILIPIVILIAA--PGVLRML 300 >gi|269105136|ref|ZP_06157830.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Photobacterium damselae subsp. damselae CIP 102761] gi|268160586|gb|EEZ39085.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Photobacterium damselae subsp. damselae CIP 102761] Length = 293 Score = 70.5 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 62/157 (39%), Gaps = 4/157 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 + K K P LD++ V+ G+ + +++ + + R + Sbjct: 136 LAQKSKTLRHKISGQLPYLLDLLAMCVQTGMTIESSMSYLSREMKGFDRDLSHLLTRTND 195 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + L +++ + +P E+ F I Q G ++ L L+ +RD + + + Sbjct: 196 RARIIGLEQALDELYIRVPTNEMRSFVMTIKQSLQYGSSIYNILTTLAADIRDMRMLTLE 255 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + AK S +I + + L+ PG + +L Sbjct: 256 EKIGKLAAKMSIPLILFILIPIVILIAA--PGVLRML 290 >gi|257791502|ref|YP_003182108.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|257475399|gb|ACV55719.1| type II secretion system protein [Eggerthella lenta DSM 2243] Length = 295 Score = 70.5 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 57/144 (39%), Gaps = 1/144 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +R + + +D++ SV AGL + A+ + + + E +L Sbjct: 137 KRNERQEAINRELASVIDLLSISVEAGLTMERAMRHVSERLDGTLCKEIALCERDINLLG 196 Query: 64 -SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S +++ R+ + VS F + + V ++ G ++S L + + R+R+ + + Sbjct: 197 YSREDALRRLADRCQTEGVSMFVSSVIVSAKSGSSISRVLKMQASVARNRQFTALEEKVE 256 Query: 123 SMEAKASAWIIGSLPFCVSTLVYF 146 + K + + + +V Sbjct: 257 KLPTKMIFPMSMFIMPSLMLIVMA 280 >gi|226943335|ref|YP_002798408.1| type IV pilus biogenesis protein [Azotobacter vinelandii DJ] gi|226718262|gb|ACO77433.1| type IV pilus biogenesis protein [Azotobacter vinelandii DJ] Length = 405 Score = 70.5 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 51/174 (29%), Gaps = 7/174 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + ++AG+P+ A +I +R V + G + S+ + Sbjct: 67 DIALFTRQMATMMKAGVPLLQAFDIISEGFDKPAMRKLVDEVKQEVAAGNGFAASLRKKP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G L L ++ + +KA+++ A + Sbjct: 127 R-----YFDNLYCNLVESGEQSGALESLLERIATYKEKTEALKARIKKAMTYPIAVILVA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 ++ + V + LL V ++ ++ + Sbjct: 182 IAVSAILLIKVVPQFQSVFANFGAELPALTLLVVNL-SEVLQEYWFYALLGIPI 234 Score = 36.3 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 17/131 (12%), Positives = 41/131 (31%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P+ DA+ + G + + V +V G+ L+ S+ Sbjct: 275 FARTLSTTFAAGVPLVDALDSVAGATGNVVFRNATEKVKADVTTGMQLNFSMRTTG---- 330 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++ + G L E L ++ + +E A + + Sbjct: 331 --TFPSMAIQMTAIGEESGTLDEMLDKVAGFYEAEVDNMVDSLTGLLEPMIMAVLGVLVG 388 Query: 138 FCVSTLVYFTS 148 + + Sbjct: 389 GLIVAMYLPIF 399 >gi|172058131|ref|YP_001814591.1| type II secretion system protein [Exiguobacterium sibiricum 255-15] gi|171990652|gb|ACB61574.1| type II secretion system protein [Exiguobacterium sibiricum 255-15] Length = 395 Score = 70.5 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 66/173 (38%), Gaps = 6/173 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 + VR+G+ + A ++ Q+ P+ V + G+ S++I + Sbjct: 54 EHLVMYARQFATLVRSGVSIVKATEILRKQTDSKPLERALVEVEDDLRSGIQFSQAIEKH 113 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R F +++ + GNL EAL N+ L+ + +K KV + + + + Sbjct: 114 PR-----VFDTFFVSMAMAGEASGNLEEALDNIVTQLQKQYEIKRKVISALIYPAVVSIV 168 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + V T + L ++ + VA + + + L+I F Sbjct: 169 AIGVVVFLMLNVVPTFASIFDQLGSELPLITKIVVAVSDFFVAYWWVLLLIAF 221 >gi|146329906|ref|YP_001210009.1| type IV fimbrial biogenesis protein FimO [Dichelobacter nodosus VCS1703A] gi|790210|gb|AAB65806.1| FimO [Dichelobacter nodosus] gi|146233376|gb|ABQ14354.1| type IV fimbrial biogenesis protein FimO [Dichelobacter nodosus VCS1703A] Length = 407 Score = 70.5 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 56/175 (32%), Gaps = 9/175 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHLGLSLSESIS 70 D + +RAG+PV A+ ++ + ++ V E G + +E++S Sbjct: 66 SKDIVFFTRQMSTMLRAGMPVLRALDLVGQSIEKPKAMQEMVFDVHEKIQNGATFAEALS 125 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + + G L + + +++ L + +K K++ Sbjct: 126 SHPLH-----FDSLYVSLVAAGEEAGMLDKTMDDIAVNLEKGEAVKKKIKKALQYPAIVM 180 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI--GIMVMRLMI 183 + + V + + V + + GI + L++ Sbjct: 181 LFAIVVTAVLMIKVVPVFAEFFESNGGTLPAPTQMVVKISHFFVNKGIYFLMLIV 235 Score = 41.6 bits (96), Expect = 0.046, Method: Composition-based stats. Identities = 13/131 (9%), Positives = 41/131 (31%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ + + + + E + + G +S ++ Sbjct: 277 FSRTMATLFDAGVPLMKGLEATAPATGNIIYEEAVYNIRDDVQNGQQMSFAMKNTGL--- 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++ + GNL E L ++ + + + + +E A++ + Sbjct: 334 ---FPTIAVQMTAIGEESGNLGEMLGRVASFYEEELDWRIEGLTAMIEPLIMAFLAVVVG 390 Query: 138 FCVSTLVYFTS 148 + + Sbjct: 391 GLLIAMYLPIF 401 >gi|66044052|ref|YP_233893.1| type II secretion system protein [Pseudomonas syringae pv. syringae B728a] gi|63254759|gb|AAY35855.1| type II secretion system protein [Pseudomonas syringae pv. syringae B728a] Length = 405 Score = 70.5 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 17/165 (10%), Positives = 49/165 (29%), Gaps = 6/165 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73 D + ++AG+P+ + +I + +P + + G S + ++ + Sbjct: 67 DIAFFSRQMATMMKAGVPLLQSFDIISEGAENPNMRALVGSLKQEVSAGNSFATALRQKP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G L L ++ + +KAK++ A + Sbjct: 127 E-----YFDDLFCNLVDAGEQAGALESLLDRVASYKEKTEKLKAKIKKAMTYPIAVLIVA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + V L+ + + ++ + Sbjct: 182 LIVSGILLIKVVPQFQSVFASFGAQLPTFTLMVIGLSDVVQKWWL 226 Score = 38.6 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 15/128 (11%), Positives = 38/128 (29%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + + AG+P+ +A+ + G + + V + +S + Sbjct: 277 RTLATTFAAGVPLVEALDSVAGATGNVVFK-----NAVIKVKQDVSTGMQLNFSMRSTGV 331 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + ++ + G L L ++ D + ME A++ + V Sbjct: 332 FPSLAIQMTAIGEESGALDTMLDKVATYYEDEVDNMVDNLTSLMEPMIMAFLGVIVGGLV 391 Query: 141 STLVYFTS 148 + Sbjct: 392 IAMYLPIF 399 >gi|294649076|ref|ZP_06726520.1| type IV fimbrial assembly protein PilC [Acinetobacter haemolyticus ATCC 19194] gi|292825037|gb|EFF83796.1| type IV fimbrial assembly protein PilC [Acinetobacter haemolyticus ATCC 19194] Length = 409 Score = 70.5 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 18/193 (9%), Positives = 56/193 (29%), Gaps = 15/193 (7%) Query: 1 MKHLIKKRTAKFL---------DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51 +K++ +KR D + ++AG+P+ ++ +P E Sbjct: 47 IKNIREKRKNILEGLMKKKVTTLDITVFTRQLATMMKAGVPLVQGFEIVAEGLENPSMRE 106 Query: 52 FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 + G + + ++ + + + + G L L ++ Sbjct: 107 VVLGLKGEVEGGNTFAGALRKYPQ-----YFDNLFCSLVESGEQSGALETMLDRVAIYKE 161 Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + +K K++ + + + V + D + V + Sbjct: 162 KSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMS 221 Query: 171 FMLIGIMVMRLMI 183 + + +++ Sbjct: 222 MWMQEYWFILIIV 234 Score = 34.3 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 37/128 (28%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + + AG+P+ DA+ G +++ V E I + R P Sbjct: 280 RTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVATGQQLQFAMRASNRFP--- 336 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + + G L L ++ + + ME A + + V Sbjct: 337 --SMAIQMVAIGEESGALDSMLDKVATHFENEVDNAVDGLTSMMEPLIMAILGVLVGGLV 394 Query: 141 STLVYFTS 148 + Sbjct: 395 VAMYLPIF 402 >gi|323527883|ref|YP_004230036.1| general secretion pathway protein F [Burkholderia sp. CCGE1001] gi|323384885|gb|ADX56976.1| general secretion pathway protein F [Burkholderia sp. CCGE1001] Length = 405 Score = 70.5 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 60/184 (32%), Gaps = 12/184 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + + +R + + AGLP+ +A+AV+ QS D +R + Sbjct: 59 LGRRLSQREQAI------LTRQLASLLIAGLPLDEALAVLTEQSERDYIRELMAAIRAEV 112 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SL+ ++S+ + + + + G L L+ L+ + R +K K+ Sbjct: 113 LGGHSLANALSQHPK-----DFPEIYRALVAAGEHTGKLGLVLSRLADYIEQRNALKQKI 167 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 I + + + V ++ +A + + Sbjct: 168 VLAFTYPTIVTIIAFGIVTFLLSYVVPQVVNVFASTKQQLPFLTIMMMALSGFVRNWWWA 227 Query: 180 RLMI 183 L+ Sbjct: 228 VLIA 231 Score = 35.5 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 36/130 (27%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ S+ I G SLS ++ + P Sbjct: 274 FASTLGILTAAGVPILRALQAAAETLSNTAMRGNIDDAIVRVREGTSLSRALGNTKTFPP 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+++ L + + +E + G + Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAAEGEARELERRTMFLTSLLEPLLILAMGGVVL 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 VIVLAVMLPI 397 >gi|206901854|ref|YP_002250592.1| FimO [Dictyoglomus thermophilum H-6-12] gi|206740957|gb|ACI20015.1| FimO [Dictyoglomus thermophilum H-6-12] Length = 409 Score = 70.5 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 52/154 (33%), Gaps = 6/154 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 D + AGL +S + ++ QS ++ + V G SLSE+ ++ Sbjct: 71 DLTVFTRQFATMINAGLSLSTCLNILSEQSESKALKQILKEVQRMVDEGSSLSEAFAKFP 130 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + ++ G L E L L+ L ++ ++ K+++ I Sbjct: 131 D-----VFSPLYINMVKAAESAGTLDETLERLAVTLEKQQELRRKIKSAMTYPVIVLIIA 185 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 F + T + G + + + Sbjct: 186 IGAGFGMLTFLVPIFAGMFESMGAQLPLPTAILL 219 Score = 41.3 bits (95), Expect = 0.058, Method: Composition-based stats. Identities = 15/134 (11%), Positives = 40/134 (29%), Gaps = 5/134 (3%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 N + VR G+P+ A+ + + + V + + + + R + P Sbjct: 277 NFATTLAAQVRTGVPILQALQLAGQTAGNSVFRKAIDLTRQRVREGERIAPVLRETKVFP 336 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+L + L ++ + +E ++ G + Sbjct: 337 P-----MVVHMISIGEESGSLEQMLNKIAEFYEGEVAAAVESLTSLIEPLMMVFVGGIVG 391 Query: 138 FCVSTLVYFTSPGY 151 + L + Sbjct: 392 GMLIALYLPIFTMF 405 >gi|14521588|ref|NP_127064.1| hypothetical protein PAB1458 [Pyrococcus abyssi GE5] gi|5458807|emb|CAB50294.1| Hypothetical protein [Pyrococcus abyssi GE5] Length = 355 Score = 70.5 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 24/181 (13%), Positives = 68/181 (37%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K + ++R + P L + + AG+ +++ + + + EFR +++ H Sbjct: 169 KSVWRRRVEEVERALPYVLRHMASLLNAGIGLAETMVSVAKSDYGVISEEFRMMVQEMHK 228 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S ++++ M VS I + GGNL++ L ++ +K Sbjct: 229 GSSFEDALASFEEKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIKLMDYV 288 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + + ++ ++ +V + + + + F + ++++ + Sbjct: 289 QKINGISFVYMFMTVVMPTLLIVVIIAGSIFAKRLIIDMAGLAILFLFGFPALSLIIIVM 348 Query: 182 M 182 + Sbjct: 349 I 349 >gi|319783869|ref|YP_004143345.1| type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169757|gb|ADV13295.1| Type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 320 Score = 70.5 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 70/146 (47%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + +++R ++ + FP+ +D+++ AG+ + + + + + + + V Sbjct: 163 LSQKVRERRREYRNGFPDFMDLMIVCSDAGMSMEAGIERVSKELAKTYPALSQNLQLVSL 222 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G SL +++ + + L EV F+T++ +LG +LS AL S +R ++ A Sbjct: 223 ELRAGRSLDDALKALADRLSLDEVRSFATLLQQSKELGTSLSGALRVFSDDMRHKRMSLA 282 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A ++ AK S ++ + V + Sbjct: 283 EEKAHALPAKMSVPVVVCILPVVLMI 308 >gi|84623124|ref|YP_450496.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188575724|ref|YP_001912653.1| pilin biogenesis protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|84367064|dbj|BAE68222.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188520176|gb|ACD58121.1| pilin biogenesis protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 419 Score = 70.5 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 20/173 (11%), Positives = 55/173 (31%), Gaps = 6/173 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + +++G+P+ ++ +I + ++ ++ G SL ESIS+ Sbjct: 79 KEIAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLYESISKH 138 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L ++ + + +K K++ + Sbjct: 139 PVQ-----FDELYRNLVRAGEGAGVLETVLETVATYKENIEALKGKIKKALFYPAMVVAV 193 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + V + L V A+ ++ + L++ Sbjct: 194 AIIVSAILLIFVVPQFEEVFKSFGAELPAFTQLLVNASRFMVSYWWLMLIVTV 246 Score = 38.6 bits (88), Expect = 0.37, Method: Composition-based stats. Identities = 15/137 (10%), Positives = 48/137 (35%), Gaps = 7/137 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISR 71 + +AG+P+ +A+ ++ G + + + E R+ + +G ++ ++ + Sbjct: 282 NSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEEAVFRMRDDVSVGYPVNMAMKQ 341 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + ++ + G L L ++ + N + +E + Sbjct: 342 VNLFPHM------VIQMTAIGEEAGALDAMLFKVAEYFEEEVNNAVDALSSLLEPLIMVF 395 Query: 132 IIGSLPFCVSTLVYFTS 148 I + V + Sbjct: 396 IGTIVGGMVIGMYLPIF 412 >gi|332284566|ref|YP_004416477.1| hypothetical protein PT7_1313 [Pusillimonas sp. T7-7] gi|330428519|gb|AEC19853.1| hypothetical protein PT7_1313 [Pusillimonas sp. T7-7] Length = 291 Score = 70.5 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 1/147 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + L ++R + L +FP LD+ V AGL + A+ P+R E R + Sbjct: 134 LHGLARQRQFQMLREFPFLLDMTTLCVEAGLNLHGALQQAAQHGPDGPLRGELRHALADM 193 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G+ +++ + L V T ++ QLG +L L + S R + ++A+ Sbjct: 194 RAGVPRIQALQELADRCGLPAVQSLVTALAQADQLGMSLGPLLRSQSEQRRAERFLRAEK 253 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146 AL K ++ + C ++ F Sbjct: 254 LALEAPVKMLFPMVFCIFPCTFLIIGF 280 >gi|121607251|ref|YP_995058.1| type II secretion system protein [Verminephrobacter eiseniae EF01-2] gi|121551891|gb|ABM56040.1| type II secretion system protein [Verminephrobacter eiseniae EF01-2] Length = 313 Score = 70.5 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 1/147 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAV-AVIVGQSSDPVRSEFRRVIETQ 59 +K I R + L P LDII V AGL + A+ + VR EF+RV+ Sbjct: 156 LKDRIALRRRELLRMMPFFLDIITLCVEAGLNMHGAIAQAVAKGPQGTVREEFQRVLRDV 215 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + +ES+ M + V+ F + ++G NL L + R + ++A+ Sbjct: 216 RAGKARTESLRDMAERLNEPGVTQFVMAVIQAERMGMNLGPVLRAQADQQRSERFLRAEK 275 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146 A+ K +I + C ++ F Sbjct: 276 LAMEAPVKMLLPLIAFIFPCTFIVLLF 302 >gi|325958219|ref|YP_004289685.1| type ii secretion system F domain-containing protein [Methanobacterium sp. AL-21] gi|325329651|gb|ADZ08713.1| Type II secretion system F domain protein [Methanobacterium sp. AL-21] Length = 371 Score = 70.5 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 74/177 (41%), Gaps = 2/177 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R+ + + P AL + +RAG+ + D++ + + EF R +E G + + Sbjct: 191 RSNEASRELPFALRQMATELRAGIGMHDSMRSVALSGYGALSEEFARALEEIKYGETTEK 250 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +++ M + + + I+ GG+L++ L ++ MK K + + + Sbjct: 251 ALTDMSERVNSEGLKRAIYQITRTLSSGGDLAKTLNVIADDTAYEMRMKLKDYSQKLNSF 310 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI--MVMRLM 182 ++ ++ V T++ + + + P ++L + M++ +++ + Sbjct: 311 TMIYMFVAILGPVITMIMLIAASTVMGSVLPPMLLLILYLFLFPMIVAFMAFMIKRL 367 >gi|288956974|ref|YP_003447315.1| type II secretion system [Azospirillum sp. B510] gi|288909282|dbj|BAI70771.1| type II secretion system [Azospirillum sp. B510] Length = 334 Score = 70.5 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 59/147 (40%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + L K+R + P+ALD+++ AG + ++A + + + E + Sbjct: 174 LALLAKRRQSAIARTLPDALDLLIICANAGYSLDLSLARVGREMRLAARAMSEELVITAD 233 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + E++ + L+ + + + G L++AL L+ +R + M Sbjct: 234 ELRVLTDRREALRNLAERNDLEALRSLVATLLQAQKYGTPLTQALRTLAAEMRHARMMAI 293 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + +A + A S ++ + V +V Sbjct: 294 EERAARLPALISVPLMVLILPAVFIIV 320 >gi|94265745|ref|ZP_01289481.1| type II secretion system protein [delta proteobacterium MLMS-1] gi|93453720|gb|EAT04098.1| type II secretion system protein [delta proteobacterium MLMS-1] Length = 402 Score = 70.5 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 20/149 (13%), Positives = 43/149 (28%), Gaps = 4/149 (2%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + AGLP+ ++ ++ Q +P + R + ++ S Sbjct: 68 FTRQLSTMIDAGLPLVQSLQILGEQQENPTFKKVLRAVRSEVETGS----TFADALKKHP 123 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + ++GG L A L+ + + +K KV+ S I + Sbjct: 124 HIFDNLYCNMMEAGEVGGILDTICARLATFMEKAQALKKKVKGAMTYPIISLCIALIVLA 183 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 + V + V Sbjct: 184 VMLIFVVPVFEEMFADFGSALPAPTQFVV 212 Score = 40.9 bits (94), Expect = 0.084, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 41/130 (31%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + +++G+P+ +++ V+ + + V + S+SE + Sbjct: 271 FSRTLGTMLQSGVPIMESLKVVARTAGNKVVE-----KAVFRVNDSISEGRALAEPLAES 325 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L L ++ + + + S+E ++ G + Sbjct: 326 GVFPGMVVQMINVGESTGALDTMLIKVADFYDEEVDQAVENLTASIEPLMMVFLGGMIGG 385 Query: 139 CVSTLVYFTS 148 V + Sbjct: 386 LVIAMYLPIF 395 >gi|313672382|ref|YP_004050493.1| type ii secretion system f domain [Calditerrivibrio nitroreducens DSM 19672] gi|312939138|gb|ADR18330.1| Type II secretion system F domain [Calditerrivibrio nitroreducens DSM 19672] Length = 407 Score = 70.5 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 61/189 (32%), Gaps = 12/189 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQ 59 + +KK L++ AG+P+ + + Q+ E +I+ Sbjct: 54 LSQKLKKYEKVRLEELIVFTRQFASLFAAGIPILTILRRLESQNYSQKMKETISTIIKDI 113 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G LS + + S + + GG L L L+ IL + + K+ Sbjct: 114 EAGTPLSIAFRK-----HKDIFSDLYINMLRVGEEGGVLDIVLQRLALILETDLDTRNKI 168 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF---MLIGI 176 + + K ++ ++ L+ F P ++ + L F Sbjct: 169 KNATRYPK---MVVSAIVIAFVILMTFVIPKFVGLFSKFNTELPLPTKILVFVNDFFHNF 225 Query: 177 MVMRLMINF 185 + L+I+ Sbjct: 226 WWLILIISI 234 Score = 39.3 bits (90), Expect = 0.23, Method: Composition-based stats. Identities = 13/132 (9%), Positives = 40/132 (30%), Gaps = 5/132 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 I+ ++G+ + + ++ + + V + +I+ + +Y Sbjct: 272 LSRISRILGLLYKSGISIITSFEIVSEVTGNEVIKDELLIIKEKVTRGGTIHGSFEASKY 331 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + + + G L E L ++ + K + ++E + G Sbjct: 332 FPP-----VVSDMISAGEDTGQLDEMLFKIADYYDSEVDYSIKTLSQAIEPILLVMVAGM 386 Query: 136 LPFCVSTLVYFT 147 + + Sbjct: 387 VLILALGVFLPM 398 >gi|312793028|ref|YP_004025951.1| type II secretion system f domain [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180168|gb|ADQ40338.1| Type II secretion system F domain [Caldicellulosiruptor kristjanssonii 177R1B] Length = 403 Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 57/164 (34%), Gaps = 6/164 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLS 66 R + + + + AG+P+ A++VIV Q + + ++ G LS Sbjct: 57 RKKLSIKELSMFCRQLSTMLMAGIPLITALSVIVEQFKGRAMGKVLEDIYKSVQSGSMLS 116 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ P ++ +L G+L + L ++ +K K+ + Sbjct: 117 RALAEKGECFP-----EILINMTEAGELSGSLDKTLERMATHFEKELKLKQKIVNALIYP 171 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + + + V T G + L D +AA+ Sbjct: 172 AIVLLVAFGVLVIMLVYVIPTFVGIFDELGVDLPATTKFIIAAS 215 Score = 34.3 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 17/131 (12%), Positives = 37/131 (28%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+ + A+ ++ + +F +I G LS I+ Sbjct: 271 FARTLATMTSAGVSIIIALETTRNVINNKFIEKKFEDIILRVQRGEGLSFPIAESG---- 326 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + G L L + + E + G + Sbjct: 327 --IFPRIVEILIRTGEESGTLDSMLEKTADYFESEVENQVTRLTSVFEPLIIVLLAGMVG 384 Query: 138 FCVSTLVYFTS 148 F VS+++ Sbjct: 385 FLVSSIILPLF 395 >gi|17547835|ref|NP_521237.1| general secretion pathway protein F [Ralstonia solanacearum GMI1000] gi|17430140|emb|CAD16825.1| probable general secretory pathway f transmembrane protein [Ralstonia solanacearum GMI1000] Length = 403 Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 23/178 (12%), Positives = 60/178 (33%), Gaps = 8/178 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65 KR + + + + AGLP+ +A+A + Q+ V + G SL Sbjct: 59 KRLSPQENAL--VTRQLASLLVAGLPLDEALAALADQAERPYVHELLASIRAEVVGGSSL 116 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S ++++ R + + + GNL L+ L+ + R + +K++ Sbjct: 117 SVALAQHPR-----DFPDIYRALVSAGEHSGNLGLVLSRLADYIESRNALTSKIKLAFTY 171 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + ++ + + V ++ + + + + ++ Sbjct: 172 PAIVTVVAFAIVIFLLSYVVPQVVSVFANTKQKLPTLTIIMLWLSDFVRNWGWLAAIV 229 >gi|319943385|ref|ZP_08017667.1| type II secretion system protein [Lautropia mirabilis ATCC 51599] gi|319743200|gb|EFV95605.1| type II secretion system protein [Lautropia mirabilis ATCC 51599] Length = 298 Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 1/147 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 ++ L +RT + P LDII ++ AG ++ A+ V + P+ E RRV+ Sbjct: 140 LRDLGARRTRQIAKALPFYLDIITLAIEAGSNMTGALQHAVDKGPTGPMSEELRRVLRDI 199 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + +ES+ + + + +S + I + G +L L + R+ + M+A+ Sbjct: 200 RAGRTRAESLRALAERLRIPAISNWVAAILTAEKQGSSLGPILRAQADQRRNERFMQAEA 259 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146 AL K ++ + C +V+F Sbjct: 260 MALKAPVKMLFPLMICIFPCTFIIVFF 286 >gi|152994352|ref|YP_001339187.1| type II secretion system protein [Marinomonas sp. MWYL1] gi|150835276|gb|ABR69252.1| type II secretion system protein [Marinomonas sp. MWYL1] Length = 316 Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 59/147 (40%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +K R + P+ALD++V AGLP+ + + S+ + E Sbjct: 156 LKMRAASRGGRLSSSLPDALDLMVICAEAGLPLGRIFKTVSKELAFSAPEIAEELGYTHA 215 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + ++++ + ++ V + + + G LS+AL +S R R + Sbjct: 216 ELQILSDRTKALLNLSERCGVENVEAMVSTLIQAERYGTPLSQALRTISEESRKRLVLDL 275 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + +A + A+ S ++ + V ++ Sbjct: 276 EEKAGKLPAQLSVPLMVFILPPVIAMM 302 >gi|312876911|ref|ZP_07736887.1| Type II secretion system F domain [Caldicellulosiruptor lactoaceticus 6A] gi|311796322|gb|EFR12675.1| Type II secretion system F domain [Caldicellulosiruptor lactoaceticus 6A] Length = 403 Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 57/164 (34%), Gaps = 6/164 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLS 66 R + + + + AG+P+ A++VIV Q + + ++ G LS Sbjct: 57 RKKLSIKELSMFCRQLSTMLMAGIPLITALSVIVEQFKGRAMGKVLEDIYKSVQSGSMLS 116 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ P ++ +L G+L + L ++ +K K+ + Sbjct: 117 RALAEKGECFP-----EILINMTEAGELSGSLDKTLERMATHFEKELKLKQKIVNALIYP 171 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + + + V T G + L D +AA+ Sbjct: 172 AIVLLVAFGVLVIMLVYVIPTFVGIFDELGVDLPATTKFIIAAS 215 >gi|258593743|emb|CBE70084.1| Type 4 fimbrial assembly protein pilC [NC10 bacterium 'Dutch sediment'] Length = 404 Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 22/185 (11%), Positives = 54/185 (29%), Gaps = 18/185 (9%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSE 67 D + + AGLP+ + + Q + + E G + + Sbjct: 59 KKVKDKDLAVFTRQLATMIDAGLPLVQCLDTLASQQPNKGFKNILAEIREDVEGGSTFTT 118 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ R + + + GG L L L+ + ++ KV+ + Sbjct: 119 ALKRHP-----TVFTPLYANMVEAGEAGGMLDTILNRLAVYIEKATTLRRKVKGALIYPS 173 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMN------------VLINDPRGHMLLGVAAAFMLIG 175 + ++ + V G+ V+ + F++ G Sbjct: 174 TIVVVAIAVVVFLLIFVIPVFAGFFEGSGVELPLPTQIVMTLSRLVRTYILACLGFLIAG 233 Query: 176 IMVMR 180 ++ +R Sbjct: 234 VVGIR 238 >gi|296129670|ref|YP_003636920.1| Type II secretion system F domain protein [Cellulomonas flavigena DSM 20109] gi|296021485|gb|ADG74721.1| Type II secretion system F domain protein [Cellulomonas flavigena DSM 20109] Length = 409 Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 56/179 (31%), Gaps = 19/179 (10%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D + + +GL + A+A++V Q+ P+ +V +G + S ++ + Sbjct: 70 KDIAIMSRQLATMIDSGLSLLRALAILVEQTESKPLAKILSQVRNDVEVGTAFSTALGKH 129 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P + ++GG L + L +++ ++AK+++ I Sbjct: 130 PETFPP-----LMVNMVRAGEVGGFLDQTLVSIADNFETEVRLRAKIKSAMAYPVIVLVI 184 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRG-------------HMLLGVAAAFMLIGIMV 178 + + L + G + +L G+ Sbjct: 185 AVLAVVGMLLFIVPVFAEMFAGLGGELPGPTKFLMFLSGMLKWTIGPTVVLLVLAGVWW 243 Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 15/133 (11%), Positives = 36/133 (27%), Gaps = 5/133 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ A+ ++ S + V + ++ S+ S Sbjct: 278 FTRNFGTMIHAGVPLLQALEIVGEASGNIVIERAAKAVQE-----SVRRGESLAGPLSQH 332 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L L ++ + +E I + F Sbjct: 333 PVFPPMVVQMMAVGEDTGALDTMLGKVADFYDQEVEAMTEQLTSLIEPLMIVVIGAIVGF 392 Query: 139 CVSTLVYFTSPGY 151 V ++ + Sbjct: 393 MVISMYMPIFGVF 405 >gi|326797332|ref|YP_004315152.1| type II secretion system F domain protein [Marinomonas mediterranea MMB-1] gi|326548096|gb|ADZ93316.1| Type II secretion system F domain protein [Marinomonas mediterranea MMB-1] Length = 316 Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 59/147 (40%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +K R K P+ALD++V AGLP+ + + SS + E Sbjct: 156 LKMRAASRGGKLSSSLPDALDLMVICAEAGLPLGRIFKTVSKELAFSSPELAEEIGYTHA 215 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + S+++ + + V+ + + + G LS+AL +S R ++ Sbjct: 216 ELQILSDRSKALMNLADRCGVDNVAAMVSTLIQAERYGTPLSQALRTISVESRKNMVLEL 275 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + +A + A+ S ++ + V ++ Sbjct: 276 EEKAGKLPAQLSVPLMVFILPPVIAMM 302 >gi|311105394|ref|YP_003978247.1| type II secretion system protein F domain-containing protein 1 [Achromobacter xylosoxidans A8] gi|310760083|gb|ADP15532.1| bacterial type II secretion system protein F domain protein 1 [Achromobacter xylosoxidans A8] Length = 281 Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 42/151 (27%), Positives = 82/151 (54%) Query: 37 VAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG 96 + +V QS P+ EF ++ Q +G+ ++ + MP + + + +Q GG Sbjct: 131 LRHVVEQSGAPLAQEFGLMLREQRMGVPWDSALENLRNRMPADSTALVVAAMRIAAQTGG 190 Query: 97 NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 NL+EAL ++++ LR R ++AK+ AL+ + + AWI+GSLP + ++ P M +L Sbjct: 191 NLAEALESIAQTLRARLQLQAKLLALTSQGRLQAWIVGSLPLLLLAVLDRLEPEIMGLLW 250 Query: 157 NDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + P G +L + A G++++R ++ D+ Sbjct: 251 HTPVGWGVLTIVAVLETTGMLLIRRIVRIDI 281 >gi|237653361|ref|YP_002889675.1| type II secretion system protein [Thauera sp. MZ1T] gi|237624608|gb|ACR01298.1| type II secretion system protein [Thauera sp. MZ1T] Length = 301 Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 1/156 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + I+ R L P LD+I V AGL ++ A+ + P+ E RV+ Sbjct: 144 LDDRIRCRRRLMLKQLPFVLDLITLCVEAGLNLTGALQQAAAKGPAGPLGEELHRVLRDV 203 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G S ++++ + ++ + + +G +L L R + +A+ Sbjct: 204 RAGKSRADALRGFADRIGEPAIANLVSTVIQAENMGMSLGPMLRAQGEQRRAERFARAEK 263 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A+ K +I + C ++ F + Sbjct: 264 AAMEAPVKMLLPLIACIFPCTFIVLGFPIAVKFMTM 299 >gi|289548811|ref|YP_003473799.1| type II secretion system F domain protein [Thermocrinis albus DSM 14484] gi|289182428|gb|ADC89672.1| Type II secretion system F domain protein [Thermocrinis albus DSM 14484] Length = 407 Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 57/164 (34%), Gaps = 6/164 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLS 66 R D + V+AG+P+ +A+ VI Q D + + V G+S+S Sbjct: 61 RRRVSDRDISIFCRQLGTMVQAGVPLVEALNVIAEQMPDRRLSEASQEVARMISEGMSVS 120 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + + + + G + AL S +K K+++ S Sbjct: 121 AAMRKFP-----HVFPELVVNLMLVGEETGKIDVALLKASEYYEKMATIKGKIKSASFYP 175 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + ++ + + T + L + + +AA+ Sbjct: 176 TFVVIVAVTIVSGILYFLVPTFAQIYSSLGGELPLPTQMLIAAS 219 Score = 35.5 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 11/134 (8%), Positives = 31/134 (23%), Gaps = 5/134 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + +G+ + + + + + E + Sbjct: 272 AMAQFARTMATLFSSGVALERSFEISKQVVGNTIIKEALEAAGKGVVEG-----QPMYRA 326 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + G L + L ++R D + +E +I G Sbjct: 327 LEKTGVFPKLVVAMVRVGEDTGKLDQMLETIARFYEDEVDRTVDGLIKLIEPMLIVFIGG 386 Query: 135 SLPFCVSTLVYFTS 148 ++ + L Sbjct: 387 AVGLILIALYMPIF 400 >gi|222111305|ref|YP_002553569.1| type II secretion system protein [Acidovorax ebreus TPSY] gi|221730749|gb|ACM33569.1| type II secretion system protein [Acidovorax ebreus TPSY] Length = 288 Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 61/147 (41%), Gaps = 1/147 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAV-AVIVGQSSDPVRSEFRRVIETQ 59 +K K+R L P +D++ S+ AGL +S A+ + + P+ E RV+ Sbjct: 131 LKETTKQRNLAILKALPFFIDLLTLSIEAGLNLSGAMQQAVAKSAGGPLMVEINRVLRDV 190 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + +++ + ++ F + + + G +L L + R + ++A+ Sbjct: 191 RAGKARIDALRDFSARLDFTPITSFVSALVQGEKTGSSLGPILRAQAEQRRTERFLRAEK 250 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146 A+ K +I + C ++ F Sbjct: 251 LAMEAPVKMLGPLIFFIFPCTFIVIGF 277 >gi|329900877|ref|ZP_08272626.1| General secretion pathway protein F / Type II secretory pathway, component PulF [Oxalobacteraceae bacterium IMCC9480] gi|327549350|gb|EGF33921.1| General secretion pathway protein F / Type II secretory pathway, component PulF [Oxalobacteraceae bacterium IMCC9480] Length = 406 Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 24/168 (14%), Positives = 57/168 (33%), Gaps = 6/168 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 ++ + + A LP+ A + ++ Q+ +R + G SLS+++S Sbjct: 66 TNELALFTRQLASLLEASLPLEQAFSALLEQAERTYLRDLIASIRSEVMGGSSLSDALSH 125 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 R + + + + G L++ L+ L+ + R + KV+ Sbjct: 126 HPR-----DFADIYRALVASGEQIGQLAKVLSRLADYIERRNALVQKVKLAFTYPAIVTV 180 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + ++ + T V +L +A + + M Sbjct: 181 VAFAIVIFLLTYVVPQIVSVFANTKQKLPLLTVLMLAVSDFVRNYGWM 228 >gi|261856174|ref|YP_003263457.1| type II secretion system F domain protein [Halothiobacillus neapolitanus c2] gi|261836643|gb|ACX96410.1| Type II secretion system F domain protein [Halothiobacillus neapolitanus c2] Length = 412 Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 16/167 (9%), Positives = 43/167 (25%), Gaps = 5/167 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D + ++AGLP+ A+ ++ + E ++ S Sbjct: 73 KDIAVLARQLATMMQAGLPIVQALDIMAQSAEKVPMKELISTVKNDVE----SGLTLADA 128 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G+L L ++ +++K K++ A + Sbjct: 129 MDKHRKYFDELFVNLVRAGEDSGSLELVLDRIAVYKEKSESLKGKIKKALFYPIAVVVVA 188 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVM 179 + + V L + + + Sbjct: 189 FIVTSILLIFVIPQFQELFQGFGATLPAFTLFVIGISNAFKTNWYWI 235 Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 13/135 (9%), Positives = 40/135 (29%), Gaps = 5/135 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + AG+P+ +A+ G + + + + + S + + Sbjct: 277 AAIARFARTLGTMFSAGVPLVEAMEPTAGSTGNALFKDAVMNMRDIIAAGSPLKVAMQQS 336 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + P+ + + G L L ++ + + + + +E A++ Sbjct: 337 KLFPV-----MVVQMVAIGEETGALDTMLGKVADMYEEEVDNMVDAMSSLLEPMIMAFLG 391 Query: 134 GSLPFCVSTLVYFTS 148 + V + Sbjct: 392 VVVGGLVIAMYLPIF 406 >gi|167746591|ref|ZP_02418718.1| hypothetical protein ANACAC_01301 [Anaerostipes caccae DSM 14662] gi|167653551|gb|EDR97680.1| hypothetical protein ANACAC_01301 [Anaerostipes caccae DSM 14662] Length = 401 Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 22/200 (11%), Positives = 68/200 (34%), Gaps = 22/200 (11%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRSEFRRVIETQH 60 L KR K + + ++AG+ + ++ +I + + ++ ++ + Sbjct: 49 KLKSKRKMK-ASVLADFCRQLGTLLKAGVSLVRSLNIIANEIGVRSTDKETYQNLLNSIR 107 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ LSE++ R P+ + ++ GNL + ++ + KV+ Sbjct: 108 QGIPLSEAMDEQGRTFPV-----LLVSMMRSAEANGNLDQTSLRMAEHYEKENRLNGKVR 162 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--------------HMLLG 166 + + ++ + + + + + + + P + Sbjct: 163 NAMIYPIVLSVLLVGVIIFILSYLVPQFQDIFDTMESLPLPTVILLGLSGGIRKYWPFIL 222 Query: 167 VAAAFMLIGIMVMRLMINFD 186 + A ++ GI ++ + Sbjct: 223 LILAAVIFGIRLILRIPKVR 242 Score = 38.2 bits (87), Expect = 0.54, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 38/133 (28%), Gaps = 5/133 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + +G+P+ A+ + + E S+ S V M + Sbjct: 267 FARTLCSLYSSGIPIIQAMQIGSSTVGNRYIEEQF-----GQAVDSIRRGESLSVSLMEI 321 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G+L E L +++ L + +E + + F Sbjct: 322 DGFQKKLSSAIQVGEETGSLDEMLDSIAESLEFEAERALERLVTLLEPVLIILMAVIIGF 381 Query: 139 CVSTLVYFTSPGY 151 V ++ Y Sbjct: 382 VVVAVILPIYESY 394 >gi|24215073|ref|NP_712554.1| type II secretory pathway component protein F [Leptospira interrogans serovar Lai str. 56601] gi|45657445|ref|YP_001531.1| general secretory pathway protein F [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24196129|gb|AAN49572.1| type II secretory pathway component protein F [Leptospira interrogans serovar Lai str. 56601] gi|45600684|gb|AAS70168.1| general secretory pathway protein F [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 408 Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 56/168 (33%), Gaps = 6/168 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 + + + AG+P+ +++ IV Q+ + R + G SLSE++ + Sbjct: 66 RKEVGLFSRQLATLLGAGIPLDKSLSSIVEQTENQNFRKVITGMQANITEGSSLSEAMKK 125 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P Q + + G+ L L+ + +KAKVQ + Sbjct: 126 HPDVFPSQ-----FPSLVAVGEKTGDYEATLTRLAELEEKSSELKAKVQVAMVYPFIMGS 180 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + + T+V + + + LIG + Sbjct: 181 LSIFVTIFLLTVVIPQIQELFLQFDAKLPLITRIVIGVSDFLIGFWWL 228 >gi|330941596|gb|EGH44379.1| type II secretion system protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 405 Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 17/165 (10%), Positives = 49/165 (29%), Gaps = 6/165 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73 D + ++AG+P+ + +I + +P + + G S + ++ + Sbjct: 67 DIAFFSRQMATMMKAGVPLLQSFDIISEGAENPNMRALVGSLKQEVSAGNSFATALRQKP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G L L ++ + +KAK++ A + Sbjct: 127 E-----YFDDLFCNLVDAGEQAGALESLLDRVASYKEKTEKLKAKIKKAMTYPIAVLIVA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + V L+ + + ++ + Sbjct: 182 LIVSGILLIKVVPQFQSVFASFGAQLPTFTLMVIGLSDVVQKWWL 226 Score = 38.6 bits (88), Expect = 0.43, Method: Composition-based stats. Identities = 15/128 (11%), Positives = 38/128 (29%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + + AG+P+ +A+ + G + + V + +S + Sbjct: 277 RTLATTFAAGVPLVEALDSVAGATGNVVFK-----NAVIKVKQDVSTGMQLNFSMRSTGV 331 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + ++ + G L L ++ D + ME A++ + V Sbjct: 332 FPSLAIQMTAIGEESGALDTMLDKVATYYEDEVDNMVDNLTSLMEPMIMAFLGVIVGGLV 391 Query: 141 STLVYFTS 148 + Sbjct: 392 IAMYLPIF 399 >gi|332158910|ref|YP_004424189.1| hypothetical protein PNA2_1270 [Pyrococcus sp. NA2] gi|331034373|gb|AEC52185.1| hypothetical protein PNA2_1270 [Pyrococcus sp. NA2] Length = 355 Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 70/183 (38%), Gaps = 3/183 (1%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K + ++R + P L + + AG+ +++ + + + EFR VI+ H Sbjct: 169 KSVWRRRVEEVERSLPYVLRHMASLLSAGIGLAETMVSVAKSDYGVISEEFRMVIQEMHK 228 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S +++++ M VS I + GGNLS+ L ++ +K Sbjct: 229 GSSFEDALTKFEEKMKSDMVSRVVKQILRALKFGGNLSDILYKMADEFSFEYRIKLMDYV 288 Query: 122 LSM-EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA--AFMLIGIMV 178 + + + + +V ++ LI D G ++ + A I I + Sbjct: 289 QKINGISFVYMFMTVVMPTLLIVVILAGSIFVKRLIVDVTGLAVIFLMGFPALSFIIITI 348 Query: 179 MRL 181 ++ Sbjct: 349 IKR 351 >gi|307731501|ref|YP_003908725.1| general secretion pathway protein F [Burkholderia sp. CCGE1003] gi|307586036|gb|ADN59434.1| general secretion pathway protein F [Burkholderia sp. CCGE1003] Length = 405 Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 60/184 (32%), Gaps = 12/184 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + + +R + + AGLP+ +A+AV+ QS D +R + Sbjct: 59 LGRRLSQREQAI------LTRQLASLLIAGLPLDEALAVLTEQSERDYIRELMAAIRAEV 112 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SL+ ++++ + + + + G L L+ L+ + R +K K+ Sbjct: 113 LGGHSLANALAQHPK-----DFPEIYRALVAAGEHTGKLGLVLSRLADYIEQRNALKQKI 167 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 I + + + V ++ +A + + Sbjct: 168 VLAFTYPTIVTIIAFGIVTFLLSYVVPQVVNVFASTKQQLPFLTIMMMALSGFVRNWWWA 227 Query: 180 RLMI 183 L+ Sbjct: 228 VLIA 231 Score = 35.5 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 36/130 (27%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ S+ I G SLS ++ + P Sbjct: 274 FASTLGILTAAGVPILRALQAAAETLSNTAMRGNIDDAIVRVREGTSLSRALGNTKTFPP 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+++ L + + +E + G + Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAAEGEARELERRTMFLTSLLEPLLILAMGGVVL 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 VIVLAVMLPI 397 >gi|122879113|ref|YP_200224.6| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 401 Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 20/173 (11%), Positives = 55/173 (31%), Gaps = 6/173 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + +++G+P+ ++ +I + ++ ++ G SL ESIS+ Sbjct: 61 KEIAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLYESISKH 120 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L ++ + + +K K++ + Sbjct: 121 PVQ-----FDELYRNLVRAGEGAGVLETVLETVATYKENIEALKGKIKKALFYPAMVVAV 175 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + V + L V A+ ++ + L++ Sbjct: 176 AIIVSAILLIFVVPQFEEVFKSFGAELPAFTQLLVNASRFMVSYWWLMLIVTV 228 Score = 38.6 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 15/137 (10%), Positives = 48/137 (35%), Gaps = 7/137 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISR 71 + +AG+P+ +A+ ++ G + + + E R+ + +G ++ ++ + Sbjct: 264 NSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEEAVFRMRDDVSVGYPVNMAMKQ 323 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + ++ + G L L ++ + N + +E + Sbjct: 324 VNLFPHM------VIQMTAIGEEAGALDAMLFKVAEYFEEEVNNAVDALSSLLEPLIMVF 377 Query: 132 IIGSLPFCVSTLVYFTS 148 I + V + Sbjct: 378 IGTIVGGMVIGMYLPIF 394 >gi|298485508|ref|ZP_07003591.1| Type 4 fimbrial assembly protein pilC [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159972|gb|EFI01010.1| Type 4 fimbrial assembly protein pilC [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 405 Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 20/174 (11%), Positives = 54/174 (31%), Gaps = 7/174 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73 D + ++AG+P+ + +I + +P + + G S + ++ + Sbjct: 67 DIAFFSRQMATMMKAGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRKKP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G L L ++ + +KAK++ A + Sbjct: 127 E-----YFDDLFCNLVDAGEQAGALESLLDRVASYKEKTERLKAKIKKAMTYPTAVLIVA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + + V + L+ +A ++ + ++ F V Sbjct: 182 FIVSGILLIKVVPQFQSVFAGFNAELPAFTLMVIAL-SEVVQQWWLAIVALFPV 234 Score = 38.6 bits (88), Expect = 0.47, Method: Composition-based stats. Identities = 14/128 (10%), Positives = 37/128 (28%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + + AG+P+ +A+ + G + + V + +S + Sbjct: 277 RTLATTFAAGVPLVEALDSVAGATGNVVFR-----NAVNQVKQDVSTGMQLNFSMRSTGV 331 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + ++ + G L L ++ + + ME A + + V Sbjct: 332 FPSLAIQMTAIGEESGALDAMLDKVATYYEEEVDNMVDNMTSLMEPMIMAILGVIVGGLV 391 Query: 141 STLVYFTS 148 + Sbjct: 392 IAMYLPIF 399 >gi|113971812|ref|YP_735605.1| type II secretion system protein [Shewanella sp. MR-4] gi|113886496|gb|ABI40548.1| type II secretion system protein [Shewanella sp. MR-4] Length = 406 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 61/184 (33%), Gaps = 8/184 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 + L K++ LD+ + R+G+P+ A+A + + ++ + E Sbjct: 53 LAQLFKRKVG--LDELQIFTRQMYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQL 110 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G LS ++++ + + G L +A LS + + + ++ Sbjct: 111 TAGRPLSSAMNQHPD-----VFDSLFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRI 165 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +A I ++ +V D + + + + + + Sbjct: 166 KAAMRYPIFVLIAIALAMVILNIMVIPKFAEMFARFGADLPWATKVLIGTSNLFVNYWPL 225 Query: 180 RLMI 183 L+I Sbjct: 226 MLII 229 Score = 39.3 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 9/135 (6%), Positives = 35/135 (25%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + AG+P++ A++++ + + + + S + Sbjct: 266 RSTLSRYCRSFSMMLSAGVPMTQALSLVADAVDNAYMHDKIVGMRR-----GIESGESML 320 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G + + L + + + K +E + Sbjct: 321 RVSNQSKLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGIV 380 Query: 133 IGSLPFCVSTLVYFT 147 + + Sbjct: 381 AVIVLVLALGIYLPM 395 >gi|91785779|ref|YP_560985.1| putative general secretory pathway protein F [Burkholderia xenovorans LB400] gi|91689733|gb|ABE32933.1| Putative general secretory pathway protein F [Burkholderia xenovorans LB400] Length = 405 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 60/183 (32%), Gaps = 12/183 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + + +R + + AGLP+ +A++V+ QS D +R + Sbjct: 59 LGRRLSQREQAI------LTRQLASLLIAGLPLDEALSVLTEQSERDYIRELMASIRAEV 112 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SL+ ++++ + + + + G L L+ L+ + R +K K+ Sbjct: 113 LGGHSLANALTQHPK-----DFPEIYRALVAAGEHTGKLGLVLSRLADYIEQRNALKQKI 167 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 I + + + V ++ +A + + Sbjct: 168 VLAFTYPAIVTLIAFGIVTFLLSYVVPQVVNVFASTKQQLPFLTIMMMALSGFVRNWWWA 227 Query: 180 RLM 182 L+ Sbjct: 228 MLI 230 Score = 38.6 bits (88), Expect = 0.40, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ S+ E I G SLS ++ + P Sbjct: 274 FASTLGILTAAGVPILRALQAAAETLSNNAMRENIDDAIVRVREGTSLSRALGNTKTFPP 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+++ L + + +E + G + Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAADGEARELERRTMFLTSLLEPLLILAMGGVVL 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 VIVLAVMLPI 397 >gi|85860074|ref|YP_462276.1| general secretion pathway protein F [Syntrophus aciditrophicus SB] gi|85723165|gb|ABC78108.1| general secretion pathway protein F [Syntrophus aciditrophicus SB] Length = 409 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 6/160 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 + + + AG+P+ A+ ++V Q+ + ++S ++ + G+SLS +S Sbjct: 70 ELSVTTRHLATLLSAGMPLVQALNILVTQTDNQALQSILSQIRKDVVEGISLSAGMSSFP 129 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R S F + + G L L L+ ++ K++A Sbjct: 130 R-----VFSSFYISMVRAGEASGTLPVVLERLADYSEKQQEFARKIKAALAYPILMFLFG 184 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + F + T V + L ++ + L Sbjct: 185 ALILFFLITFVIPNITEVFEEMNQSLPTITTLLISFSGFL 224 Score = 34.3 bits (77), Expect = 8.3, Method: Composition-based stats. Identities = 16/137 (11%), Positives = 43/137 (31%), Gaps = 7/137 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISR 71 + ++ G+P+ A+ + + + + +E G LS +++R Sbjct: 272 EMAMARFASTLGTLLQNGVPLLTALEISRHIARNLLIAEAIENAGVEIKEGQGLSVALAR 331 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 +T + + G L E L+ ++ + +E Sbjct: 332 SGL------FPRMATEMIAIGEQSGRLEEMLSRIADSYEKETSAGLAFFMSLLEPLMILI 385 Query: 132 IIGSLPFCVSTLVYFTS 148 + + F V +++ Sbjct: 386 MGLLVGFVVISVLLPIF 402 >gi|28899184|ref|NP_798789.1| putative tight adherence TadC-like transmembrane protein [Vibrio parahaemolyticus RIMD 2210633] gi|153836802|ref|ZP_01989469.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ3810] gi|260361577|ref|ZP_05774604.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus K5030] gi|260876734|ref|ZP_05889089.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AN-5034] gi|260898188|ref|ZP_05906684.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus Peru-466] gi|260900405|ref|ZP_05908800.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ4037] gi|28807408|dbj|BAC60673.1| putative tight adherence TadC-related transmembrane protein [Vibrio parahaemolyticus RIMD 2210633] gi|149749948|gb|EDM60693.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ3810] gi|308089100|gb|EFO38795.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus Peru-466] gi|308091488|gb|EFO41183.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AN-5034] gi|308109137|gb|EFO46677.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ4037] gi|308113997|gb|EFO51537.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus K5030] gi|328474278|gb|EGF45083.1| putative tight adherence TadC-like transmembrane protein [Vibrio parahaemolyticus 10329] Length = 313 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 68/157 (43%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ ++ KR P+ LD++V +GL + A+ + + S + E V Sbjct: 153 LRRMVNKRQQAIRAGVPDMLDLLVVCTESGLGFNAALRRVADEIVISHPELADEVDTVCN 212 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ES+ +V L+E+ +++S S++GG+L +L + RD++ A Sbjct: 213 KIQAGKPMPESLRELVVRTGLEELMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAA 272 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + A + K ++ + C + P +++ Sbjct: 273 EEIAAKIPVKMMFPMVIFIWPC--FFIVAIGPALISL 307 >gi|108763511|ref|YP_633923.1| type 4 fimbrial assembly protein PilC [Myxococcus xanthus DK 1622] gi|46560496|gb|AAT00616.1| type IV pilin [Myxococcus xanthus] gi|108467391|gb|ABF92576.1| type 4 fimbrial assembly protein PilC [Myxococcus xanthus DK 1622] Length = 417 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 49/161 (30%), Gaps = 6/161 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AGLP+ + ++ Q +P + + G + ++++ + Sbjct: 83 FTRQFATMIDAGLPLVQCLDILASQMDNPSFKKVLFAIKSKVEQGSTFADALKEHPK--- 139 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++GG L L L+ + +K+KV++ + + Sbjct: 140 --VFDELYVQLCAAGEVGGILDAILNRLAAYREKNEKLKSKVKSAMTYPIIVILVAIGVT 197 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + V ++ G + V + M Sbjct: 198 AVLLLKVTPVFEKMFADFGSELPGPTQMIVNFSHMAQEYFF 238 Score = 38.2 bits (87), Expect = 0.58, Method: Composition-based stats. Identities = 11/130 (8%), Positives = 35/130 (26%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+P+ DA+ V + E + + + + Sbjct: 286 FTRTLGTMISSGVPILDALDVTAKTA-GNRTVEDAIIYVRGKIAEGKNIAGPLA----ET 340 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G + L ++ D + +E ++ G + Sbjct: 341 KVFPSMVVQMIGVGEATGAMDTMLNKIADFYDDEVDAAINSLTAMIEPVLMVFLGGVVGG 400 Query: 139 CVSTLVYFTS 148 + + Sbjct: 401 FLIGMYLPIF 410 >gi|209696320|ref|YP_002264251.1| general secretion pathway protein F [Aliivibrio salmonicida LFI1238] gi|208010274|emb|CAQ80606.1| general secretion pathway protein F [Aliivibrio salmonicida LFI1238] Length = 405 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 53/158 (33%), Gaps = 9/158 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 +D + V+AG+P+ + + + Q +RS V G L+ES Sbjct: 66 NDLSLITRQLATLVQAGMPLEECLKAVAEQGEKPHIRSMMMGVRSKVIEGYPLAESFGGY 125 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G+L L L+ +R+ M++K+Q + + Sbjct: 126 P-----HVFDDLFCSMVAAGEKSGHLDTVLNRLADYAENRQKMRSKLQQAMIYPI---ML 177 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 +S L+ P ++ + +G + Sbjct: 178 TLIAVAVISFLLATVVPKIVDQFVQMGQGLPAVTEILI 215 >gi|325124302|gb|ADY83825.1| type 4 fimbrial assembly protein [Acinetobacter calcoaceticus PHEA-2] Length = 408 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 17/193 (8%), Positives = 57/193 (29%), Gaps = 15/193 (7%) Query: 1 MKHLIKKRTAKFL---------DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51 ++++ +KR D + ++AG+P+ ++ +P E Sbjct: 47 VRNIREKRKNILEGLFKKKVSTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMRE 106 Query: 52 FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 + G + + ++ + ++ + + G L L ++ Sbjct: 107 VVLGIKGEVEGGSTFASALRKYPQH-----FDNLFCSLVESGEQSGALETMLDRVAIYKE 161 Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + +K K++ + + + V + D + V + Sbjct: 162 KSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMS 221 Query: 171 FMLIGIMVMRLMI 183 + + +++ Sbjct: 222 KWMQEYWFIMIIV 234 Score = 38.9 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 38/128 (29%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + + AG+P+ DA+ G +++ + E I + R+ P Sbjct: 280 RTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVATGQQLQFAMRVSNRFP--- 336 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + + G L L ++ + + ME A + + V Sbjct: 337 --SMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLV 394 Query: 141 STLVYFTS 148 + Sbjct: 395 IAMYLPIF 402 >gi|121999149|ref|YP_001003936.1| general secretion pathway protein F [Halorhodospira halophila SL1] gi|121590554|gb|ABM63134.1| general secretion pathway protein F [Halorhodospira halophila SL1] Length = 410 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 54/164 (32%), Gaps = 6/164 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66 R D + VR+GLP+ + + + Q+ ++S V G SL+ Sbjct: 65 RRGVRAGDLALVTRQMATLVRSGLPLEEVLRTVSRQTERKRLKSVLLAVRTRVTEGHSLA 124 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ P + + + G+L L L+ R+ M+ KVQ Sbjct: 125 QALGDFPHIFPDIYRTSVAA-----GEQSGHLEVVLERLAEYAEKRQQMRQKVQLALFYP 179 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + + + V + + D + +A + Sbjct: 180 ILLTVMAILVTVALLGYVVPEVIQVFDNIGQDLPALTIGLIAVS 223 >gi|327538077|gb|EGF24767.1| type II secretion system protein [Rhodopirellula baltica WH47] Length = 297 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 40/177 (22%), Positives = 85/177 (48%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R ++ + LD+++ +R+G S A+A ++ P+R + + LG S S Sbjct: 118 RLSRIERQLIDLLDMMIPMLRSGAGASAALAAASEVTASPLRDQIHWCVRRIQLGDSGSS 177 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + R MP+ + FST +SV + GG+L+ LA+++R+ RDR+ + ++++ +++ Sbjct: 178 VFRELARRMPIDAMELFSTTMSVHWETGGSLAPVLASVARVARDRQEVARRIRSNIAQSQ 237 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 S + L + V+ +++ P M + G + +GI+ M + Sbjct: 238 FSTIAVLLLIYFVALVLWLDRPEVMKEFASSSLGSAAIAATIVLQAVGIVWMNAISR 294 >gi|319789966|ref|YP_004151599.1| Type II secretion system F domain protein [Thermovibrio ammonificans HB-1] gi|317114468|gb|ADU96958.1| Type II secretion system F domain protein [Thermovibrio ammonificans HB-1] Length = 404 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 27/189 (14%), Positives = 57/189 (30%), Gaps = 21/189 (11%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 D + + AG+P+ A+ +I Q + +R + G S +ISR Sbjct: 65 KDLLIFTRQLHAMIHAGIPLVQALRIIKEQLPNRRLRQIVEEIASFIEEGGKFSTAISRY 124 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + ++ G L E L L+ L + ++ KV++ + Sbjct: 125 RDIFGD-----LYISMVRAAEEAGTLEETLKRLADYLEKVEKLRGKVKSALFYPVFVFIV 179 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHM---------------LLGVAAAFMLIGIM 177 + + V T + + + + +IG + Sbjct: 180 AMLIVTGILVFVIPTFEQLYADMGGELPALTQMVIKVSNWVRDYAGWIVLFIVVFIIGFV 239 Query: 178 VMRLMINFD 186 +R + F Sbjct: 240 QLRRLEKFR 248 Score = 38.2 bits (87), Expect = 0.61, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 50/138 (36%), Gaps = 7/138 (5%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70 + + + +G+ + +A+++ +++ +R V G+SLS++++ Sbjct: 266 LKSSIASFARTLASMIASGINILNALSISAETANNEVIRKAIEDVRSQVEKGVSLSQALA 325 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + P+ + + GNL E L+ ++ + + +E Sbjct: 326 KHSIFPPM------LVNMVAIGEQAGNLDEMLSKVADFYEEEVDRTVDGLTSLIEPLMIV 379 Query: 131 WIIGSLPFCVSTLVYFTS 148 +I + + L Sbjct: 380 FIGSIIGVIIVALYLPIF 397 >gi|302189197|ref|ZP_07265870.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. syringae 642] Length = 405 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 19/180 (10%), Positives = 50/180 (27%), Gaps = 18/180 (10%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73 D + ++AG+P+ + +I + +P + + G S + ++ + Sbjct: 67 DIAFFSRQMATMMKAGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRQKP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G L L ++ + +KAK++ A + Sbjct: 127 E-----YFDDLFCNLVDAGEQAGALESLLDRVASYKEKTERLKAKIKKAMTYPTAVLIVA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA------------AFMLIGIMVMRL 181 + + V + L+ +A I + + Sbjct: 182 FIVSGILLIKVVPQFQSVFAGFNAELPAFTLMVIALSEVVQQWWLAIVILFFISFFMFKR 241 Score = 38.2 bits (87), Expect = 0.51, Method: Composition-based stats. Identities = 14/128 (10%), Positives = 37/128 (28%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + + AG+P+ +A+ + G + + V + +S + Sbjct: 277 RTLATTFAAGVPLVEALDSVAGATGNVVFR-----NAVNQVKQDVSTGMQLNFSMRSTGV 331 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + ++ + G L L ++ + + ME A + + V Sbjct: 332 FPSLAIQMTAIGEESGALDAMLDKVATYYEEEVDNMVDNMTSLMEPMIMAVLGVIVGGLV 391 Query: 141 STLVYFTS 148 + Sbjct: 392 IAMYLPIF 399 >gi|88854702|ref|ZP_01129368.1| type IV pilus biogenesis protein PilC [marine actinobacterium PHSC20C1] gi|88815863|gb|EAR25719.1| type IV pilus biogenesis protein PilC [marine actinobacterium PHSC20C1] Length = 413 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 20/164 (12%), Positives = 55/164 (33%), Gaps = 9/164 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 DD + + +GL + A+ ++ Q+ + + + + G +LS++ ++ Sbjct: 74 DDLAVMSRQMSTMISSGLSLIRALVILSEQTENKTLAKALGEIRQDVETGGTLSDAFAKH 133 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P + + GG L +AL +++ ++ +++ + Sbjct: 134 GTVFPP-----IMIHLVRAGETGGFLDDALESIANNFEGEVKLRGTIKSALTYPVVVLIM 188 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + + + L + LL +M G+ Sbjct: 189 AIAAVVGMLIFIVPVFEEMFADLGGE---LPLLTQVLVWMSTGM 229 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 39/133 (29%), Gaps = 5/133 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ A++++ S + V E R + S+ S Sbjct: 282 FTRNFGTMLGAGVPILHALSIVGETSGNYVIEEALRRVAD-----SVRSGQSVSAPLARE 336 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 T + + G++ L+ ++ D + +E I + Sbjct: 337 SVFPSMVTQMVAVGEDAGSMEVMLSKIADFYDDEVQKTTEQLTALIEPLMIGVIGAIVGV 396 Query: 139 CVSTLVYFTSPGY 151 V L + Sbjct: 397 MVIALYLPIFAIF 409 >gi|325108941|ref|YP_004270009.1| type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] gi|324969209|gb|ADY59987.1| Type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] Length = 310 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 68/158 (43%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + ++I KR P+ALD++V V +GL + + + + S + +EF Sbjct: 149 LAYVISKRKQAIFLTMPDALDLLVVCVESGLGLDQGMNRVTAELSDTAPEICAEFSLCNF 208 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + E + + + ++ + ++ + G ++++AL S +R ++ A Sbjct: 209 QLQMGRNRREVLHDLGVRTGVDDMKALAAILIQADRFGSSIAQALRVQSDSMRVKRMQIA 268 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A + ++ + + ++ P ++++ Sbjct: 269 EEKAQKTAVQMIFPLVLFIFPGIFVVL--VGPAAISMM 304 >gi|114045980|ref|YP_736530.1| type II secretion system protein [Shewanella sp. MR-7] gi|113887422|gb|ABI41473.1| type II secretion system protein [Shewanella sp. MR-7] Length = 406 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 19/165 (11%), Positives = 52/165 (31%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 D+ + R+G+P+ A+A + + ++ + E G LS ++++ Sbjct: 64 DELQIFTRQMYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSAMNQH 123 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L +A LS + + + +++A Sbjct: 124 PD-----VFDSLFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRIKAAMRYPIFVLIA 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 I ++ +V + D + + + + + Sbjct: 179 IALAMVILNIMVIPKFAEMFSRFGADLPWATKVLIGTSNLFVNYW 223 Score = 40.1 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 9/132 (6%), Positives = 35/132 (26%), Gaps = 5/132 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + AG+P++ A++++ + + + + S + Sbjct: 269 LSRYCRSFSMMLSAGVPMTQALSLVADAVDNAYMHDKIVGMRR-----GIESGESMLRVS 323 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + + G + + L + + + K +E + Sbjct: 324 NQSKLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGIVAVI 383 Query: 136 LPFCVSTLVYFT 147 + + Sbjct: 384 VLVLALGIYLPM 395 >gi|157963576|ref|YP_001503610.1| type II secretion system protein [Shewanella pealeana ATCC 700345] gi|157848576|gb|ABV89075.1| type II secretion system protein [Shewanella pealeana ATCC 700345] Length = 406 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 21/171 (12%), Positives = 55/171 (32%), Gaps = 6/171 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRM 72 ++ + R+G+P+ A+A + + E + E G LS ++++ Sbjct: 64 EELQIFTRQMYSLTRSGIPILRAIAGLSETTHSVRMKEALDDISEQLTSGRPLSSAMNQH 123 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L +A LS + + + +++A Sbjct: 124 PD-----VFDALFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRIKAAMRYPIFVLIA 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 I ++ +V + D L + + + + + L++ Sbjct: 179 IAIAMVILNIMVIPKFAEMFSRFGADLPWATKLLINTSNVFVNYWPLMLLV 229 Score = 40.1 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 10/132 (7%), Positives = 36/132 (27%), Gaps = 5/132 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + AG+P++ A++++ + + + + S + Sbjct: 269 LSRYCRSFSMMLSAGVPMTQALSLVADAVDNAYMHDSIVGMRR-----GIESGESMLRVS 323 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 Q + + + G + + L + + + K +E ++ Sbjct: 324 NNSQLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPLLIGFVACI 383 Query: 136 LPFCVSTLVYFT 147 + + Sbjct: 384 VLVLALGIYLPM 395 >gi|77761128|ref|YP_242147.2| fimbrial assembly protein [Xanthomonas campestris pv. campestris str. 8004] gi|37784400|gb|AAP43032.1| PilC [Xanthomonas campestris pv. campestris] Length = 399 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 56/174 (32%), Gaps = 6/174 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71 D + +++G+P+ ++ +I + ++ ++ G SL E+ISR Sbjct: 59 SKDIAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLHEAISR 118 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + G L L ++ + + +K K++ Sbjct: 119 HPVQ-----FDDLYRNLVRAGEGAGVLETVLDTVANYKENIEALKGKIKKALFYPAMVMA 173 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + + V + + VAA+ ++ + L+ + Sbjct: 174 VAIIVSGILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWLMLLGSI 227 Score = 37.4 bits (85), Expect = 0.85, Method: Composition-based stats. Identities = 16/131 (12%), Positives = 48/131 (36%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77 + +AG+P+ +A++++ G + + V E R+ + +G ++ ++ ++ + Sbjct: 269 FARTTAVTFKAGVPLVEALSIVAGATGNKVYEEAVLRMRDDVSVGYPVNMAMKQVNLFPH 328 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++ + G L L ++ N + +E +I + Sbjct: 329 M------VVQMTSIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIVG 382 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 383 GMVIGMYLPIF 393 >gi|21232530|ref|NP_638447.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21114322|gb|AAM42371.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572717|gb|AAY48127.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris str. 8004] Length = 418 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 56/174 (32%), Gaps = 6/174 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71 D + +++G+P+ ++ +I + ++ ++ G SL E+ISR Sbjct: 78 SKDIAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLHEAISR 137 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + G L L ++ + + +K K++ Sbjct: 138 HPVQ-----FDDLYRNLVRAGEGAGVLETVLDTVANYKENIEALKGKIKKALFYPAMVMA 192 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + + V + + VAA+ ++ + L+ + Sbjct: 193 VAIIVSGILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWLMLLGSI 246 Score = 37.4 bits (85), Expect = 0.85, Method: Composition-based stats. Identities = 16/131 (12%), Positives = 48/131 (36%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77 + +AG+P+ +A++++ G + + V E R+ + +G ++ ++ ++ + Sbjct: 288 FARTTAVTFKAGVPLVEALSIVAGATGNKVYEEAVLRMRDDVSVGYPVNMAMKQVNLFPH 347 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++ + G L L ++ N + +E +I + Sbjct: 348 M------VVQMTSIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIVG 401 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 402 GMVIGMYLPIF 412 >gi|18977364|ref|NP_578721.1| hypothetical protein PF0992 [Pyrococcus furiosus DSM 3638] gi|18893045|gb|AAL81116.1| hypothetical protein PF0992 [Pyrococcus furiosus DSM 3638] Length = 309 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 24/181 (13%), Positives = 59/181 (32%), Gaps = 8/181 (4%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 I +R P+A + S+RAG+ S+A+ + + EFRR + G Sbjct: 90 RITRRIEDMEKALPDAFFYLAGSLRAGVSFSEALEELASAKFGALTLEFRRTVSEIKRGR 149 Query: 64 SLSESISRMV-RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 E++ R + + +I + G +++ L ++ +R+ ++ + + Sbjct: 150 PTVEALRAFALRNKRSPVIYRSTMIIIEALERGAPMADVLVAVANDVREIIRIQKERK-- 207 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 V + +I G + ++ + + Sbjct: 208 -ASTGMQMMFFLVSSGFVGPFIVAVVSNIARGMIGSGMGLSIPVSELTL----VLWLFSI 262 Query: 183 I 183 + Sbjct: 263 V 263 >gi|293610129|ref|ZP_06692430.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827361|gb|EFF85725.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 408 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 17/193 (8%), Positives = 57/193 (29%), Gaps = 15/193 (7%) Query: 1 MKHLIKKRTAKFL---------DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51 ++++ +KR D + ++AG+P+ ++ +P E Sbjct: 47 VRNIREKRKNILEGLFKKKVSTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMRE 106 Query: 52 FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 + G + + ++ + ++ + + G L L ++ Sbjct: 107 VVLGIKGEVEGGSTFASALRKYPQH-----FDNLFCSLVESGEQSGALETMLDRVAIYKE 161 Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + +K K++ + + + V + D + V + Sbjct: 162 KSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMS 221 Query: 171 FMLIGIMVMRLMI 183 + + +++ Sbjct: 222 KWMQEYWFIMIIV 234 Score = 38.9 bits (89), Expect = 0.35, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 38/128 (29%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + + AG+P+ DA+ G +++ + E I + R+ P Sbjct: 280 RTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVATGQQLQFAMRVSNRFP--- 336 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + + G L L ++ + + ME A + + V Sbjct: 337 --SMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLV 394 Query: 141 STLVYFTS 148 + Sbjct: 395 IAMYLPIF 402 >gi|163751010|ref|ZP_02158242.1| MSHA biogenesis protein MshG [Shewanella benthica KT99] gi|161329300|gb|EDQ00298.1| MSHA biogenesis protein MshG [Shewanella benthica KT99] Length = 406 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 18/164 (10%), Positives = 49/164 (29%), Gaps = 6/164 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 + + R+G+P+ A+A + ++ +R + E G LS + Sbjct: 65 ELQIFSRQMYSLTRSGIPILRAIAGLSETTNSQRMRDALDDISEQLTAGRPLSSA----- 119 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G L +A L+ + + + +++A I Sbjct: 120 MNHHQDVFDALFVSMVHVGENTGKLEDAFMQLAGYIEREQETRRRIKAAMRYPTFVLIAI 179 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++ +V + + L + + + + Sbjct: 180 TIAMVILNIMVIPKFADMFSRFGAELPWATKLLIGTSSLFVNYW 223 Score = 42.0 bits (97), Expect = 0.039, Method: Composition-based stats. Identities = 11/132 (8%), Positives = 37/132 (28%), Gaps = 5/132 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + AG+P++ A++++ + + + + S + Sbjct: 269 LSRYCRSFSMMLSAGVPMTQALSLVADAVDNAYMHDRIVAMRR-----GIESGESMLRVS 323 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 Q + + + G + + L + + + K +E ++ G Sbjct: 324 NHSQLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGFVAGI 383 Query: 136 LPFCVSTLVYFT 147 + + Sbjct: 384 VLILALGIYLPM 395 >gi|312136703|ref|YP_004004040.1| type ii secretion system f domain protein [Methanothermus fervidus DSM 2088] gi|311224422|gb|ADP77278.1| Type II secretion system F domain protein [Methanothermus fervidus DSM 2088] Length = 355 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 54/147 (36%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + P AL + +RAGL DA+ + + EF R +E G S + Sbjct: 174 RADEISRELPYALRQMATELRAGLGFHDAMKSVATSGYGALSEEFARTLEEIKYGESTTR 233 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + +P + I + GG++++AL ++ + MK + + + + Sbjct: 234 ALMNLSVRVPSPGLKRAIQQIVRSLESGGDVAKALEIIAEDIAYELRMKFRDYSQKLNSF 293 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNV 154 ++ + + Sbjct: 294 MMIYMFIGIVGPAVLPILLIIATIFMP 320 >gi|295678177|ref|YP_003606701.1| general secretion pathway protein F [Burkholderia sp. CCGE1002] gi|295438020|gb|ADG17190.1| general secretion pathway protein F [Burkholderia sp. CCGE1002] Length = 405 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 26/188 (13%), Positives = 60/188 (31%), Gaps = 12/188 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + + +R + + AGLP+ +A++V+ QS D +R + Sbjct: 59 LGRRLSQREQAI------LTRQLASLLIAGLPLDEALSVLTEQSERDYIRELMAAIRAEV 112 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SL+ ++ + + + + + G L L+ L+ + R +K K+ Sbjct: 113 LGGHSLANALQQHPK-----DFPEIYRALVAAGEHTGKLGLVLSRLADYIEQRNALKQKI 167 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 I + + + V ++ +A + + Sbjct: 168 VLAFTYPTIVTIIAFGIVTFLLSYVVPQVVNVFASTKQQLPFLTIMMMALSGFVRHWWWA 227 Query: 180 RLMINFDV 187 L+ V Sbjct: 228 MLIGVIVV 235 Score = 37.8 bits (86), Expect = 0.64, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ S+ E I G SLS ++ + P Sbjct: 274 FASTLGILTAAGVPILRALQAAADTLSNNAMRENIDDAIVRVREGTSLSRALGNTKTFPP 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+++ L + + +E + G + Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAADGEARELERRTMFLTSLLEPLLILAMGGVVL 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 VIVLAVMLPI 397 >gi|333025170|ref|ZP_08453234.1| putative integral membrane protein [Streptomyces sp. Tu6071] gi|332745022|gb|EGJ75463.1| putative integral membrane protein [Streptomyces sp. Tu6071] Length = 340 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 19/184 (10%), Positives = 66/184 (35%), Gaps = 2/184 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++ + ++ + + ++ + + A+ ++ +R +++ Sbjct: 115 REERTQMRRVEALATWTESLRDTIAGAVGLEQAIPASARAAAPALRPHLEALVDRLRART 174 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L +++ + + + + G L + L L++ R+ +M+ +V A Sbjct: 175 PLPDALQSLADEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQ 234 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + S I+ ++ + + +++ N P G ++L +G +R + Sbjct: 235 RAATRRSVQIVVAVSVLFVLGLAIFNKDFVSP-YNSPVGQVVLAGVCGLFALGFWWLRKL 293 Query: 183 INFD 186 + Sbjct: 294 STIE 297 >gi|171921006|gb|ACB59189.1| TadC [Actinobacillus suis ATCC 33415] Length = 281 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 70/154 (45%), Gaps = 4/154 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH--L 61 ++K + + ++D P +D++ +V+ G+ + A + ++ Sbjct: 126 ILKSKIKRIMNDIPGFIDLVAVNVQTGISIEAAFKQVAIDFEHLNADLTYVILRIMRKAE 185 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 SLS ++ M +P +E+ F TV+ G +L E L LS +R+ + + + + Sbjct: 186 LTSLSAALQDMAISLPTKEIRMFCTVMQQSLNFGSSLYEHLTQLSADIREMQLLVMEEKL 245 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ AK S +I + F + L+ +PG M VL Sbjct: 246 GTLSAKMSIPLILFIMFPIIILI--VAPGAMRVL 277 >gi|254506677|ref|ZP_05118817.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus 16] gi|219550258|gb|EED27243.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus 16] Length = 314 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 73/157 (46%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + + + KR ++ P+ALD++V +GL S A+ + + S E V Sbjct: 154 LNYFVNKRQSRIRGGVPDALDLLVVCTESGLGFSAALRRVADELMISHPDFADELDTVCV 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ +S++ +V ++E++ T++S S++GG+LS+ L + RD++N + Sbjct: 214 KIKAGVEMSDAFDDLVERTGIKELAGLVTMLSHASRIGGSLSQTLREYTEDFRDKRNQEI 273 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + A + K ++ + C + P +++ Sbjct: 274 EEIAAKIPTKMIFPLLLFIWPC--FFIVAIGPSMLSI 308 >gi|297159256|gb|ADI08968.1| putative type II secretion system F protein [Streptomyces bingchenggensis BCW-1] Length = 303 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 60/167 (35%), Gaps = 3/167 (1%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + +RAG +A+ + + V G ++E++ R R Sbjct: 127 ELCGAVAGELRAGRQPVEALLA---TPPGHIGERWGLVSAAARFGGDVAEALRRAARSPG 183 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + V G L+ L ++ LR ++ + +++ A+A+A ++ LP Sbjct: 184 AEGLIGVAACWQVAVDEGAGLAAGLDRVAAALRAERDQRQSLRSRLAGARATAVVLVLLP 243 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + ++VL++ P G L V G +I Sbjct: 244 VLGLLMGTALGADPLHVLLHTPAGLACLLVGGLLEWAGFAWTSRVIR 290 >gi|302877472|ref|YP_003846036.1| Type II secretion system F domain [Gallionella capsiferriformans ES-2] gi|302580261|gb|ADL54272.1| Type II secretion system F domain [Gallionella capsiferriformans ES-2] Length = 408 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 59/170 (34%), Gaps = 6/170 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMV 73 D + ++AG+P+ A+A + + + + + V ++ G LS ++ R Sbjct: 69 DLMLFSRQMYTLLKAGVPILRALAGLQESTKNTAFAAMLQDVRDSLDSGRELSAALRRHP 128 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + S F + ++ G L + L L ++MK ++ + Sbjct: 129 K-----VFSMFYISMVQVGEMTGMLDQTFIRLYAYLDFERDMKERIATALRYPSFVVIAM 183 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 G ++ V T D L + + ++ M +++ Sbjct: 184 GIAIVIINLFVIPTFAKVYAGFHADLPAITKLLLGFSAFMVSYWWMLMLM 233 >gi|330966320|gb|EGH66580.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. actinidiae str. M302091] Length = 405 Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 19/180 (10%), Positives = 51/180 (28%), Gaps = 18/180 (10%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73 D + ++AG+P+ + +I + +P + + G S + ++ + Sbjct: 67 DIAFFSRQMATMMKAGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRKKP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G L L ++ + +KAK++ A + Sbjct: 127 E-----YFDDLFCNLVDAGEQAGALESLLDRVASYKEKTERLKAKIKKAMTYPTAVLIVA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA------------AFMLIGIMVMRL 181 + + V + L+ +A A + + + Sbjct: 182 FIVSGILLIKVVPQFQSVFAGFNAELPAFTLMVIALSEVVQQWWLAIVALFFVSFFMFKR 241 Score = 38.6 bits (88), Expect = 0.46, Method: Composition-based stats. Identities = 14/128 (10%), Positives = 37/128 (28%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + + AG+P+ +A+ + G + + V + +S + Sbjct: 277 RTLATTFAAGVPLVEALDSVAGATGNVVFR-----NAVNQVKQDVSTGMQLNFSMRSTGV 331 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + ++ + G L L ++ + + ME A + + V Sbjct: 332 FPSLAIQMTAIGEESGALDAMLDKVATYYEEEVDNMVDNMTSLMEPMIMAILGVIVGGLV 391 Query: 141 STLVYFTS 148 + Sbjct: 392 IAMYLPIF 399 >gi|326331490|ref|ZP_08197780.1| putative integral membrane protein [Nocardioidaceae bacterium Broad-1] gi|325950746|gb|EGD42796.1| putative integral membrane protein [Nocardioidaceae bacterium Broad-1] Length = 238 Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 22/172 (12%), Positives = 63/172 (36%), Gaps = 3/172 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + + G+ + A+ + + P+ +E R+ S +++ Sbjct: 56 EALEEWTRSLSGVLTVGVGLEQALIATLRSTPAPIVAEVNRLAARLRARWSTEDALRAFA 115 Query: 74 RYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + + G L+ L L+ + + +V+A + +A+A Sbjct: 116 DELNDATGDLVAANLILGARRRGAGLAAVLEGLAESVAADVRARRQVEADRAKPRATARW 175 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + + V ++ + Y++ P G ++L + ++ M+ M N Sbjct: 176 VTIISAVVIVVLAVSG-TYVDP-YATPLGQVILATLLGAYVGILVWMKRMAN 225 >gi|229816771|ref|ZP_04447053.1| hypothetical protein BIFANG_02018 [Bifidobacterium angulatum DSM 20098] gi|229785787|gb|EEP21901.1| hypothetical protein BIFANG_02018 [Bifidobacterium angulatum DSM 20098] Length = 448 Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 20/164 (12%), Positives = 56/164 (34%), Gaps = 5/164 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + I+ +G +A + R+ + + + + Sbjct: 54 VIAAIIARTASGGSALEAF----QEQFGARF-ATSRITTERIAMILRRHASDDDTEHDIT 108 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + ++ ++ +LG + L ++S R + + +A+ ++ +LP Sbjct: 109 RIAGHLASACALSERLGCEVHRCLQSVSDSYRRECKARDLRKEAFAAPQATIRLMSALPL 168 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 L F + L + P G L + + ++G++ +R + Sbjct: 169 ATVALGEFMGAHPITFLFSSPTGLACLVAGSVWYVLGLLWIRRL 212 >gi|50083623|ref|YP_045133.1| type 4 fimbrial assembly protein [Acinetobacter sp. ADP1] gi|49529599|emb|CAG67311.1| type 4 fimbrial assembly protein [Acinetobacter sp. ADP1] Length = 408 Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 20/193 (10%), Positives = 58/193 (30%), Gaps = 15/193 (7%) Query: 1 MKHLIKKRTAKFL---------DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRS 50 ++ + +KR F D + ++AG+P+ A ++ +P +R Sbjct: 47 IRTIREKRKNIFEGLLKKKVKPLDIAIFTRQLATMMKAGVPLVQAFEIVAEGLENPAMRD 106 Query: 51 EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 + G + + ++ + + + + G+L L ++ Sbjct: 107 VVLGLKNEVEGGNTFAGALRKYPQ-----YFDNLFCSLIESGEQSGSLEIMLDRVAVYKE 161 Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + +K K++ + + + V D L V + Sbjct: 162 KSEVLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFKDLFTSFGADLPAFTQLVVNMS 221 Query: 171 FMLIGIMVMRLMI 183 + + +++ Sbjct: 222 NWMQDYWFILILV 234 Score = 37.8 bits (86), Expect = 0.69, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 46/163 (28%), Gaps = 24/163 (14%) Query: 5 IKKRTAKFLDDFPNAL-------------------DIIVRSVRAGLPVSDAVAVIVGQSS 45 +KR+ +F D + + + AG+P+ DA+A G ++ Sbjct: 245 ARKRSKRFRDQLDRLVLRLPIVGDLVYKAIIARYSRTLATTFAAGVPLIDALASTAGATN 304 Query: 46 DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANL 105 + V + I R+ P + + + G L E L + Sbjct: 305 NTVYEQAVLKIREDVSTGQQLNFAMRVSNRFP-----TMAIQMVAIGEESGALDEMLDKV 359 Query: 106 SRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 + + ME A + + V + Sbjct: 360 ANYYESEVDHAVDGLTSMMEPLIMAILGILVGGLVIAMYLPIF 402 >gi|212633385|ref|YP_002309910.1| type II secretion system protein [Shewanella piezotolerans WP3] gi|212554869|gb|ACJ27323.1| Type II secretion system protein [Shewanella piezotolerans WP3] Length = 406 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 20/165 (12%), Positives = 52/165 (31%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 D+ + R+G+P+ A+A + + ++ + E G LS ++++ Sbjct: 64 DELQIFTRQMYSLTRSGIPILRAIAGLSETTHSQRMKDALNDISEQLTSGRPLSSAMNQH 123 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L +A LS + + + +++A Sbjct: 124 PD-----VFDALFVSMIHVGENTGKLEDAFIQLSGYIEREQETRRRIKAAMRYPIFVLIA 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 I ++ +V + D L + + + + Sbjct: 179 IAIAMVILNIMVIPKFAEMFSRFGADLPWATKLLINTSSVFVNYW 223 Score = 42.0 bits (97), Expect = 0.042, Method: Composition-based stats. Identities = 10/132 (7%), Positives = 37/132 (28%), Gaps = 5/132 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + AG+P++ A++++ + + + + S + + Sbjct: 269 LSRYCRSFSMMLSAGVPMTQALSLVADAVDNAYMHDSIVAMRR-----GIESGDSMLRVH 323 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 Q + + + G + + L + + + K +E ++ Sbjct: 324 NSSQLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGFVACI 383 Query: 136 LPFCVSTLVYFT 147 + + Sbjct: 384 VLVLALGIYLPM 395 >gi|300390208|gb|ADK10911.1| PilG [Thermoanaerobacterium saccharolyticum] Length = 404 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 59/180 (32%), Gaps = 11/180 (6%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSE 67 + D + AG+P+ ++A + Q + ++ V E G +LSE Sbjct: 59 RKVKVKDIAVFCRQFSVLINAGIPIVASLATLSEQLENKRLKKALNEVYEDVQKGKTLSE 118 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 S+ + P+ + ++ G L + L ++ N+ K+++ Sbjct: 119 SMRKHPDAFPM-----LLFNMIEAGEVSGTLDKVLNEMAEHFEKENNLNQKIKSALAYPA 173 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML--LGVAAAFMLIGIMVMRLMINF 185 + V LV P ++ + N + L + I + NF Sbjct: 174 ---IVSIVAVLVVIFLVTNVLPTFVGMFKNAGAQLPMPTLILLGLSDSIAHYWYIYLGNF 230 Score = 35.5 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 11/133 (8%), Positives = 38/133 (28%), Gaps = 5/133 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+P+ +++ ++V + + + ++ + Sbjct: 272 FTRTLSTLIGSGIPLMESL-LVVEKVVGNTVVANGLKKAEEEIKRGNGLALP----LKKI 326 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G+L L + + +E ++ + F Sbjct: 327 DIFPPMVIQMIKVGEDSGSLDSILKKTADFYDSEVDTAVSQMTTLIEPLIIVFLASIVGF 386 Query: 139 CVSTLVYFTSPGY 151 V ++V Y Sbjct: 387 IVVSIVMPMFQMY 399 >gi|299067812|emb|CBJ39023.1| Tad secretion system, secretion accessory protein [Ralstonia solanacearum CMR15] Length = 315 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 74/164 (45%), Gaps = 3/164 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + IK R + + FP++LD+I+ V AGL + A+ +V + + E+ + Sbjct: 151 LSLKIKYRQREIFESFPDSLDLIMVCVEAGLSLDAAILRVVDEMRTARPVMAEEYELLTL 210 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL +++ + + +VS ++ + G +++++L S +LR +++M A Sbjct: 211 ELRAGLPREKALRNLAARTGVDDVSMLVAMLIQADRFGTSVADSLRVHSDMLRTKRHMLA 270 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + +A + K +I + + ++ + M + P G Sbjct: 271 EERAAKIGTKVLFPLIFCIFPSLYVVLLGPAALQMIAALGAPGG 314 >gi|46198748|ref|YP_004415.1| pili assembly protein pilC [Thermus thermophilus HB27] gi|17226361|gb|AAL37752.1|AF436068_1 competence protein PilC [Thermus thermophilus HB27] gi|46196371|gb|AAS80788.1| pili assembly protein pilC [Thermus thermophilus HB27] Length = 441 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 18/157 (11%), Positives = 49/157 (31%), Gaps = 5/157 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D + + AGL + A+A++ Q+ + E + + + ++ Sbjct: 100 KDLAIFSRQLATMLGAGLTLLQALAILERQTENRKFREILKQVR-----TDVEGGMAFSE 154 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + S + + G L L L+ L ++ K+++ Sbjct: 155 ALSKHKIFSRLYVNLVRAGETSGGLDLILDRLASFLEKELELRGKIRSAMTYPVIVFVFA 214 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + + + T + + L ++ +A + Sbjct: 215 VGVAYFLLTGIVPQFAQILTDLGSELPLLTRFLIAVS 251 Score = 38.9 bits (89), Expect = 0.35, Method: Composition-based stats. Identities = 10/130 (7%), Positives = 37/130 (28%), Gaps = 4/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+ + +A+ + G + + V E + + + Sbjct: 307 FSRTLALLLSSGVNIVEALDITKGTAGNSVVEEIVEAAKLKIQQGDP----LNLTLAQHP 362 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G L L+ ++ + ++E ++ + Sbjct: 363 FVFPPMVSSMVAIGEETGALDTMLSKVADFYEREVDEAVASLTAAIEPLMIIFLGVIVGM 422 Query: 139 CVSTLVYFTS 148 V+ + Sbjct: 423 IVAGMFLPLF 432 >gi|153003600|ref|YP_001377925.1| general secretion pathway protein F [Anaeromyxobacter sp. Fw109-5] gi|152027173|gb|ABS24941.1| general secretion pathway protein F [Anaeromyxobacter sp. Fw109-5] Length = 409 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 55/166 (33%), Gaps = 6/166 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D A + AG+P+ +A+ +V Q + ++ V + + G +L+++++ Sbjct: 69 RDLAVATRQLAVLAHAGIPLVEALTALVDQVEHERLKRVLGDVKQRVNEGSALADALAAH 128 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R S + + G L L L+ + +++K+ A I Sbjct: 129 PR-----VFSTLYVNMIRAGESSGALEIVLVRLADFTESQARLRSKIAGTMAYPIAMMVI 183 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + T+V + + + + + Sbjct: 184 GTLIMGILFTVVIPKITQIFDNTNATLPWYTAVTIGISSFAARWWW 229 >gi|83746394|ref|ZP_00943446.1| GspF [Ralstonia solanacearum UW551] gi|207722786|ref|YP_002253221.1| general secretory pathway protein f [Ralstonia solanacearum MolK2] gi|207744655|ref|YP_002261047.1| general secretory pathway protein f [Ralstonia solanacearum IPO1609] gi|83726935|gb|EAP74061.1| GspF [Ralstonia solanacearum UW551] gi|206587970|emb|CAQ18551.1| general secretory pathway protein f [Ralstonia solanacearum MolK2] gi|206596062|emb|CAQ62989.1| general secretory pathway protein f [Ralstonia solanacearum IPO1609] Length = 403 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 23/178 (12%), Positives = 60/178 (33%), Gaps = 8/178 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65 KR + + + + AGLP+ +A+A + Q+ V + G SL Sbjct: 59 KRLSPQENAL--VTRQLASLLVAGLPLDEALAALADQAERAYVHELLASIRAEVVGGSSL 116 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S ++++ R + + + GNL L+ L+ + R + +K++ Sbjct: 117 SVALAQHPR-----DFPDIYRALVSAGEHSGNLGLVLSRLADYIESRNALTSKIKLAFTY 171 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + ++ + + V ++ + + + + ++ Sbjct: 172 PAIVTVVAFAIVIFLLSYVVPQVVSVFANTKQKLPTLTIIMLWLSDFVRNWGWLAAIV 229 >gi|108761173|ref|YP_630731.1| general secretion pathway protein F [Myxococcus xanthus DK 1622] gi|108465053|gb|ABF90238.1| general secretion pathway protein F [Myxococcus xanthus DK 1622] Length = 418 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 21/180 (11%), Positives = 61/180 (33%), Gaps = 8/180 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 ++ L + R DD + + AG+ + ++++ +V Q + + + + Sbjct: 68 LRKLGRGRVN--TDDVAIFTRQLSTLLGAGVTLVESLSALVDQVEKERFKRALSDIKQRV 125 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + G SL+E++ + + P + + G L L L+ ++ ++ K+ Sbjct: 126 NEGSSLAEAMGQHPKIFP-----SIYVNMVRAGEASGALDAVLTRLADFTENQARLQQKI 180 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + + G + + V + +A++ + Sbjct: 181 LSTMLYPAIMMVVGGGILVALMVFVVPKVTKIFETMKATLPLSTRFLIASSNFFQSWWFI 240 >gi|83312845|ref|YP_423109.1| Flp pilus assembly protein TadC [Magnetospirillum magneticum AMB-1] gi|82947686|dbj|BAE52550.1| Flp pilus assembly protein TadC [Magnetospirillum magneticum AMB-1] Length = 339 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 61/147 (41%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + ++KR FP+ALD+IV V AGL V A+ + + + + E Sbjct: 180 LTNAVQKRQMALSRAFPDALDLIVICVDAGLSVETALGRVTEEMMISAPEMAEEIGLTAA 239 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + L +V +T + + G +++AL +S+ R+ + A Sbjct: 240 ELAFLADRRHAWENFAERTGLPQVKSLATALIQSEKYGTPVAQALKVISQENREGRMAAA 299 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + +A ++ AK + +I + ++ Sbjct: 300 EKKAAALPAKLTVPMIVFFLPVLFLII 326 >gi|300690059|ref|YP_003751054.1| general Secretory Pathway protein F, type II secretion system [Ralstonia solanacearum PSI07] gi|299077119|emb|CBJ49743.1| General Secretory Pathway protein F, type II secretion system [Ralstonia solanacearum PSI07] Length = 403 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 64/181 (35%), Gaps = 14/181 (7%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65 KR + + + + AGLP+ +A+A + Q+ V + G SL Sbjct: 59 KRLSPQENAL--VTRQLASLLVAGLPLDEALAALADQAERAYVHELLASIRAEVVGGSSL 116 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S ++S+ R + + + GNL L+ L+ + R + +K++ Sbjct: 117 SVALSQHPR-----DFPDIYRALVSAGEHSGNLGLVLSRLADYIESRNALTSKIKLAFTY 171 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF---MLIGIMVMRLM 182 + V L+ + P ++V N + L + + + + + Sbjct: 172 PA---IVTVVAFAIVIFLLSYVVPQVVSVFANTKQKLPTLTIVMLWLSDFVRNWGWLAAI 228 Query: 183 I 183 + Sbjct: 229 V 229 >gi|33152381|ref|NP_873734.1| tight adherence protein C [Haemophilus ducreyi 35000HP] gi|33148604|gb|AAP96123.1| tight adherence protein C [Haemophilus ducreyi 35000HP] Length = 290 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 75/158 (47%), Gaps = 6/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 + +IK + + + D P +D++ +V+ G+ + A + + + + R+I Sbjct: 132 VNMIIKSKIKRIMSDLPGFIDLVAVNVQTGISIEAAFKQVSMDFERLNPDLTYVLLRIIR 191 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L SL+ ++ + +P +E+ F TV+ G ++ + L LS +RD + + Sbjct: 192 RAEL-TSLNVALQDLAISLPTKEIRMFCTVMQQSLNFGSSVYDNLTMLSADIRDMQLLVM 250 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + ++ AK S +I + F + L+ +PG M VL Sbjct: 251 EEKLGTLAAKMSVPLILFVMFPIIILI--VAPGAMRVL 286 >gi|323491540|ref|ZP_08096719.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546] gi|323314116|gb|EGA67201.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546] Length = 313 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 76/165 (46%), Gaps = 7/165 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + ++ KR +K P+ALD++V +GL + A+ + + S E V Sbjct: 153 LGFMVDKRQSKIRGGIPDALDLLVVCTESGLGFNAALRRVADELTISHPEFADELDTVCV 212 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + G+ +S++ + +++ L+E++ T+++ S++GG+LS+ L + RD++N + Sbjct: 213 KVNAGVEMSDAFNDLIQRTGLKEIAGLVTMLAHASKIGGSLSQTLREYTEDYRDKRNQEI 272 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162 + A + K ++ + C + P + L G Sbjct: 273 EEVAAKIPTKMIFPLLIFIWPC--FFIVAIGPSML--LFTATMGK 313 >gi|304392379|ref|ZP_07374320.1| type II secretion system protein [Ahrensia sp. R2A130] gi|303295483|gb|EFL89842.1| type II secretion system protein [Ahrensia sp. R2A130] Length = 328 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 59/158 (37%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +K +K R +P+ALD+ + V +G+ + A + + S P+ E Sbjct: 169 VKQKMKARQLSISQSWPDALDLSLICVESGMSIEVAFRKVASEIGAQSPPLAEELMITTA 228 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + +V L+ V + + G LS AL LS+ RD + A Sbjct: 229 ELSFLQERKHAYDNLVYRTGLESVKNVVLSLVQSEKYGTPLSVALRVLSQENRDTRMAMA 288 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A + K + ++ + ++ P + + Sbjct: 289 EKKAAGLGPKLTVPMMICFLPVLFCVI--LGPAVIRTM 324 >gi|296120678|ref|YP_003628456.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] gi|296013018|gb|ADG66257.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] Length = 419 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 24/181 (13%), Positives = 58/181 (32%), Gaps = 14/181 (7%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + AGLP+ ++ ++ V +++ VIE G +LSE++ + Sbjct: 80 KQLCTFTRQLSTLQDAGLPILRSLRILEVQAKPGALKNSLMGVIEDIESGSTLSEAMGKQ 139 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + GG L L L+ ++++K KVQ + A + Sbjct: 140 PKA-----FDNLYVNMVRAGEAGGALEVILQRLAEFKERQQSLKRKVQGAMIYPAAVITV 194 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV--------MRLMIN 184 + + + + + + + ++ + L+I Sbjct: 195 ATLIVGFIMYWIIPKFKKIFDDFGTKLPMMTEVLIGTSSAVVNYWYLGPVIPISIWLLIK 254 Query: 185 F 185 Sbjct: 255 I 255 Score = 37.4 bits (85), Expect = 0.96, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 41/129 (31%), Gaps = 7/129 (5%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMPL 78 + V +G+P+ +A+++ + + V F V G S++ + Sbjct: 289 CRTLGTLVASGVPILEALSITRDTAGNAVFVKAFEHVNAAIREGESMAVPLRE------T 342 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G L L ++ + + + + +E + + F Sbjct: 343 KIYDEIVVNMVDVGEETGALDNMLYKVADVYDEEVGVLVEGLINMLEPLMVVVLGLIVGF 402 Query: 139 CVSTLVYFT 147 V L Sbjct: 403 IVIALFMPL 411 >gi|311105395|ref|YP_003978248.1| type II secretion system protein F domain-containing protein 2 [Achromobacter xylosoxidans A8] gi|310760084|gb|ADP15533.1| bacterial type II secretion system protein F domain protein 2 [Achromobacter xylosoxidans A8] Length = 290 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 1/147 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 ++ L KR D P D++ V AGL V A+ + +R + Sbjct: 133 LRSLSVKRRRSIERDLPFVFDMMTLCVEAGLSVHGALQMAAQSGPAGILRDALADALAEM 192 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G+S + +I + ++ ++ LG +L L + R ++++A+ Sbjct: 193 RAGVSRTAAIKALAERSNSPLARNWAAALAQAEALGISLGPVLRAQAAQSRSDRHVRAEQ 252 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146 A+ K +IG + C ++ F Sbjct: 253 LAMQAPVKMLLPLIGCIFPCTFIVLAF 279 >gi|157375501|ref|YP_001474101.1| putative putative tight adherence TadC-like transmembrane protein [Shewanella sediminis HAW-EB3] gi|157317875|gb|ABV36973.1| conserved hypothetical putative tight adherence TadC-related transmembrane protein [Shewanella sediminis HAW-EB3] Length = 321 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 69/158 (43%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ + +R FP+ALD++V AGL + A+ + + S + SE V Sbjct: 159 LQKIASRRMRMLRTGFPDALDLLVVCCEAGLGLMAAMQRVARELALSHPTLASELDLVCS 218 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL++ +++ L+++ ++ IS +LG ++E L S R+++ +A Sbjct: 219 KVRAGLTVKVALNEFTDRTGLEDIKGLNSAISQSIRLGTGIAETLRVFSDEYRNKRLQEA 278 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + QA + K ++ + + P + V+ Sbjct: 279 EEQAAKLAVKMIFPMMLCIWPS--FFIVAIGPAVLKVM 314 >gi|217969595|ref|YP_002354829.1| type II secretion system protein [Thauera sp. MZ1T] gi|217506922|gb|ACK53933.1| type II secretion system protein [Thauera sp. MZ1T] Length = 409 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 18/179 (10%), Positives = 56/179 (31%), Gaps = 7/179 (3%) Query: 1 MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIET 58 ++ R + D + +++G+P+ A + + + + + Sbjct: 56 IRKQKMARGGRISEKDIALFTRQLATMMKSGVPLLQAFDIAMKGSGNAALVRLLNDIRTD 115 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G +LS++ ++ + + + G L L ++ +K+K Sbjct: 116 VETGSNLSQAFAKHPAH-----FDRLFCNLVAAGEQAGILDGLLDRIATYKEKILAIKSK 170 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 +++ A + G + + V + + L+ +A + + Sbjct: 171 IKSALFYPAAVVVVAGLVISVMMLFVIPEFKSVFSSFGAELPVPTLMVIAISDAFVAYW 229 Score = 37.4 bits (85), Expect = 0.99, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 39/130 (30%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ +A+ + G S + V V+ T + +S S V Sbjct: 279 WTRTLSTMFAAGVPLVEALDSVGGASGNHVY-----VVATHQIQSEVSTGTSLTVAMQNA 333 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G L L ++ + + +E ++ + Sbjct: 334 EVFPTMVVQMVSIGEESGQLDAMLGKVADFFEQEVDDAVAGLSQLLEPLIMVFLGTIIGG 393 Query: 139 CVSTLVYFTS 148 V + Sbjct: 394 LVVAMYLPIF 403 >gi|251789651|ref|YP_003004372.1| type II secretion system protein [Dickeya zeae Ech1591] gi|247538272|gb|ACT06893.1| type II secretion system protein [Dickeya zeae Ech1591] Length = 318 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +K R K P+ALD++V AGL + + V+ + SS + E R Sbjct: 158 LKMRAAGRGEKLARAVPDALDLMVVCAEAGLSIGRVLQVVSKELGLSSPEMADELRYTAA 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + ++ + + E+ + + G LS+AL ++ R + Sbjct: 218 ELQILADRNTALQHLAERTRVSEIESMVATLLQAERYGTPLSQALRTIADESRKTLLLTL 277 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + +A + A+ S ++ + + ++ Sbjct: 278 EEKAGKLPAQLSVPLMALILPPIIAIM 304 >gi|251791986|ref|YP_003006706.1| TadC [Aggregatibacter aphrophilus NJ8700] gi|247533373|gb|ACS96619.1| TadC [Aggregatibacter aphrophilus NJ8700] Length = 288 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 72/158 (45%), Gaps = 6/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 + ++K + K ++D +D++ +V+ G+ + A+ + + + R+I Sbjct: 130 VNSILKSKIKKIMNDLAGFIDLVAVNVQTGVSIEAALKQVATDFKTLNPDLTYVMLRIIR 189 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + +S+++ + +P E+ F TV+ G ++ L LS +R+ + + Sbjct: 190 KSEI-TGMSQALQDLSISLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSSDIRELQLLTI 248 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + ++ AK S +I + F + L+ +PG M V Sbjct: 249 EEKLGTLAAKMSIPLILFIMFPIIILI--LAPGVMRVF 284 >gi|258405228|ref|YP_003197970.1| Type II secretion system F domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257797455|gb|ACV68392.1| Type II secretion system F domain protein [Desulfohalobium retbaense DSM 5692] Length = 401 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 64/174 (36%), Gaps = 8/174 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 D + +G+P+ A+ V+ Q+ + +R + V G SL E++ + Sbjct: 60 DRDMVIFSRQFATMIDSGVPILQALQVMCEQTENDKLRRKLYEVRNDIEGGSSLYEALRK 119 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 T + + GG L L L+ + N+K+KV+A + ++ Sbjct: 120 HPD-----VFDDLYTNMVNAGETGGVLDVILDRLATYIEKAANLKSKVRAALIYPGVVSF 174 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG--IMVMRLMI 183 + ++ + V T N + L + + + G + ++ ++ Sbjct: 175 VAVAVIAIILIFVIPTFEQLFNDFGSGLPTPTKLVIGLSRWVKGNLLWLILGLV 228 Score = 38.6 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 13/130 (10%), Positives = 37/130 (28%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 V +G+P+ A+ ++ S + + S++E + Sbjct: 269 FSRTFSTMVSSGVPILQALDIVARTSGNKIVESGV-----NEARTSIAEGQTLADPLDAT 323 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G+L L ++ D ++ +E ++ + Sbjct: 324 GVFPPMVIHMISIGETTGSLDTMLGKIADFYDDEVDVAVTTLTSLIEPILIVFLGVIVGG 383 Query: 139 CVSTLVYFTS 148 V ++ Sbjct: 384 LVVSMYLPIF 393 >gi|21326712|gb|AAL92472.1| TadC [Haemophilus ducreyi] Length = 281 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 75/158 (47%), Gaps = 6/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 + +IK + + + D P +D++ +V+ G+ + A + + + + R+I Sbjct: 123 VNMIIKSKIKRIMSDLPGFIDLVAVNVQTGISIEAAFKQVSMDFERLNPDLTYVLLRIIR 182 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L SL+ ++ + +P +E+ F TV+ G ++ + L LS +RD + + Sbjct: 183 RAEL-TSLNVALQDLAISLPTKEIRMFCTVMQQSLNFGSSVYDNLTMLSADIRDMQLLVM 241 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + ++ AK S +I + F + L+ +PG M VL Sbjct: 242 EEKLGTLAAKMSVPLILFVMFPIIILI--VAPGAMRVL 277 >gi|84494453|ref|ZP_00993572.1| hypothetical protein JNB_06644 [Janibacter sp. HTCC2649] gi|84383946|gb|EAP99826.1| hypothetical protein JNB_06644 [Janibacter sp. HTCC2649] Length = 310 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 60/151 (39%), Gaps = 2/151 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R + L +FP +++ +V AG A+ + S + E RR + Sbjct: 155 LSRRANQREERMLAEFPTVAELLALAVGAGEGAVGALERVCRLSRGELSDELRRCLGDAR 214 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL ++ + L ++ F I + + G L++ L ++ +R+ + + Sbjct: 215 AGASLPVALHGLADRTGLMSLTRFVDGIVIAVERGTPLADVLRAQAQDVREEG--RRAIM 272 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 + + + I T+++ PG+ Sbjct: 273 EAGGKKEIAMMIPVVFLVLPITVLFAIFPGF 303 >gi|313291990|gb|ADR51188.1| general secretion pathway protein F [Aeromonas veronii] Length = 406 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 57/178 (32%), Gaps = 8/178 (4%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66 R + + V AGL + +A+ + Q +RS V G SL+ Sbjct: 60 RRGASTAELALITRQLATLVGAGLTIEEALKAVAEQCEKAHLRSLVATVRSKVVEGYSLA 119 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ + + G+L + L L+ R++M+ K+ + Sbjct: 120 DSLGAFP-----HVFDQLFRSMVAAGEKSGHLEKVLNRLADYTEQRQHMRTKLLQAMIYP 174 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLM 182 + + + T V + G L+G + G+ + L+ Sbjct: 175 IVLTCVAIGVISILLTAVVPKVVAQFEHMGQQLPGTTRFLIGTSELMQAYGLWFLLLI 232 >gi|71282431|ref|YP_271096.1| type IV pilus biogenesis protein PilC [Colwellia psychrerythraea 34H] gi|71148171|gb|AAZ28644.1| type IV pilus biogenesis protein PilC [Colwellia psychrerythraea 34H] Length = 419 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 18/164 (10%), Positives = 47/164 (28%), Gaps = 6/164 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D I + AG+P+ + +I ++ +R + G+ LS+ + Sbjct: 81 DIAVITRQIATMLGAGVPLVQTIEMIGKGHNNGKMRMLLGDIATKLSSGIPLSDCLRDHP 140 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G L ++ + +K+K++ A + Sbjct: 141 L-----YFDDLYCDLVASGEQSGALETIYDRIATYKEKGEALKSKIKKAMTYPIAVLVVA 195 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + V + L+ +A + + Sbjct: 196 FIVTSILLIFVVPVFQEIFASFGAELPAFTLMVIAISEFMQAYW 239 Score = 37.8 bits (86), Expect = 0.70, Method: Composition-based stats. Identities = 13/129 (10%), Positives = 40/129 (31%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG+P+ DA+ G + R V G+ ++ ++ + Sbjct: 291 RTLSTTFAAGVPLIDALESAAGASGNAVFRDAILEVRAEVSSGMQMNLAMRN------CK 344 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + G + + L+ ++ + + + +E A + + Sbjct: 345 IFPDMVIQMVAIGEESGAVDDMLSKVANVYEQQVDDAVDGLTALLEPMIMAVLGVVIGGL 404 Query: 140 VSTLVYFTS 148 + + Sbjct: 405 IIAMYLPIF 413 >gi|52425830|ref|YP_088967.1| hypothetical protein MS1775 [Mannheimia succiniciproducens MBEL55E] gi|52307882|gb|AAU38382.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 292 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 69/156 (44%), Gaps = 4/156 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--TQ 59 ++K++ + D P +D++ V+ G+ ++ A+ + ++ + Sbjct: 136 NMILKRKIKNMMTDLPGFVDLVAICVQTGMTINAALLRVAEDFKILNPDLSYVMLRIIRK 195 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + L ++ + +P +E+ F+TV+ G ++ L LS +R+ + + + Sbjct: 196 AEIIGLPSALDTLAVSLPTREIRMFTTVLQQSLNFGSSIYSHLLQLSSDMRELQLLTIEE 255 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 Q ++ AK S +I + F + L+ +PG M V Sbjct: 256 QLGTLSAKMSVPLILFIMFPIIILI--VAPGVMRVF 289 >gi|42522078|ref|NP_967458.1| Flp pilus assembly protein TadC [Bdellovibrio bacteriovorus HD100] gi|39574609|emb|CAE78451.1| Flp pilus assembly protein TadC [Bdellovibrio bacteriovorus HD100] Length = 258 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 69/156 (44%), Gaps = 5/156 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHL 61 K+R D P +D++ SV AGL A+ IV +++ + EF V++ + Sbjct: 103 KKRRELSVRADLPFFIDLLALSVEAGLDFFSAIQKIVDKANGTDSVLAEEFSIVLKDIKI 162 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S ++++ M + + E++ F V+ G ++S+ L + S +R + ++A+ Sbjct: 163 GSSKAQALKEMAERLDMNEITSFVAVLVDAESTGASISQVLKDQSVQMRLERFVRAEKAG 222 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 ++ + V +V+ P ++ + Sbjct: 223 AQASQTMLIPLMLFILPAVFIIVF--GPVAVSFMYG 256 >gi|153833197|ref|ZP_01985864.1| bipartite nuclear localization signal containing protein [Vibrio harveyi HY01] gi|156977404|ref|YP_001448310.1| hypothetical protein VIBHAR_06191 [Vibrio harveyi ATCC BAA-1116] gi|148870468|gb|EDL69383.1| bipartite nuclear localization signal containing protein [Vibrio harveyi HY01] gi|156528998|gb|ABU74083.1| hypothetical protein VIBHAR_06191 [Vibrio harveyi ATCC BAA-1116] Length = 280 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 66/156 (42%), Gaps = 4/156 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 ++ K K P LD++ V+ G+ + A+ + + ++ ++ Sbjct: 123 LQMRRKILIRKTSAQLPYLLDMMSVCVQTGMTIEAALVYLGKELAEFDSDLCYQIKRTSD 182 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L ++++ + +P + F I Q G ++++ L++L+ +R + + + Sbjct: 183 SAKIHGLEKALNDLSERIPTPPIRSFVLTIIQNLQYGTSVAQVLSDLAEDMRKVQILTVE 242 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + AK S +I + F + L+ +PG M + Sbjct: 243 EKVGKLSAKMSVPLILFIMFPIVILI--LAPGIMQM 276 >gi|108801767|ref|YP_641964.1| type II secretion system protein [Mycobacterium sp. MCS] gi|119870918|ref|YP_940870.1| type II secretion system protein [Mycobacterium sp. KMS] gi|108772186|gb|ABG10908.1| type II secretion system protein [Mycobacterium sp. MCS] gi|119697007|gb|ABL94080.1| type II secretion system protein [Mycobacterium sp. KMS] Length = 262 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 61/171 (35%), Gaps = 1/171 (0%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + +AL+++V +R G A G+ V R V LG ++ + Sbjct: 87 ESLQSALEVLVGELRVGAHPVAAFETAAGEIDGQVSDSLRAVAARARLGADVAAGLHDTG 146 Query: 74 RYMPLQE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R L + + G +++ + R + +R+ ++ A A+A+A + Sbjct: 147 RKSSLASQWDRIAVCWQLAQTHGLSIAALMQTAQRDIAERQRFSSRASAGMAGARATAAV 206 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + LP L + +L+ G LL + G++ + Sbjct: 207 LAGLPVLGICLGQMIGADPVRLLLGGGAGAWLLLIGVTLSCAGLLWSDRIT 257 >gi|313673605|ref|YP_004051716.1| type ii secretion system f domain [Calditerrivibrio nitroreducens DSM 19672] gi|312940361|gb|ADR19553.1| Type II secretion system F domain [Calditerrivibrio nitroreducens DSM 19672] Length = 403 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 47/166 (28%), Gaps = 6/166 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71 +D + + AGLP+ A+ +I Q+S E + G S + + Sbjct: 59 DEDIVIITRQLSTMISAGLPIMKALDIIASQASKKSVREMFEDIKSQIEQGAPFSRGLEK 118 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + GG L L L+ + ++K KV+A M Sbjct: 119 YRNVFGD-----LYINMVRAGEAGGLLDNVLDRLAGYMEKAISLKRKVKAAMMYPSIVLT 173 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + + + + + + L Sbjct: 174 VAVVVVWGLMVFIIPKFKEMYEGFGGTLPALTQFTINLSNFLSSWY 219 Score = 44.3 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 13/130 (10%), Positives = 40/130 (30%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+P+ +A+ ++ S + V + + + Sbjct: 271 FSRTLGTLLNSGVPILEALDIVAKTSGNKVIE-----KHLMRSKTDIESGKNIVYPLEKA 325 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 T + + G L + L ++ D + + +E ++ G++ F Sbjct: 326 GVFPPMVTQMISVGEETGALDQMLTKIADFYDDEVDRAVEGLTKLVEPMLMLFVGGAVGF 385 Query: 139 CVSTLVYFTS 148 + + Sbjct: 386 VIIAMYLPIF 395 >gi|119773848|ref|YP_926588.1| putative type II secretion system protein F [Shewanella amazonensis SB2B] gi|119766348|gb|ABL98918.1| putative type II secretion system protein F [Shewanella amazonensis SB2B] Length = 287 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 69/157 (43%), Gaps = 2/157 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + L + R + + P LD + ++ AGL +S A+A V + P++ EF +VI Sbjct: 131 LNDLRRTRQEQIVKVLPVYLDYLTMAIEAGLNMSAAIAQAVERGPDGPLKIEFEKVIRDM 190 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G+S +++ M + + E++ + ++ + G +L L + R + +A+ Sbjct: 191 RAGISRAQAFRNMADRVQISELNSLVSALAQAERTGASLGYTLRIQADQRRVERFQRAEK 250 Query: 120 QALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 +A+ K I+ P L++ ++ + Sbjct: 251 KAMEAPIKLMFPLIMFIFPVTFLILLFPILSKFLFEM 287 >gi|327398636|ref|YP_004339505.1| Type II secretion system F domain-containing protein [Hippea maritima DSM 10411] gi|327181265|gb|AEA33446.1| Type II secretion system F domain protein [Hippea maritima DSM 10411] Length = 401 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 20/173 (11%), Positives = 53/173 (30%), Gaps = 4/173 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + +GLP+ +++ ++ Q+ E ++ + S + Sbjct: 60 DKELMIVTKQLASMLSSGLPLDESLNIMAEQAETKKMGEVLYSVKQRVE----SGASLSQ 115 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 S + + GNL L LS ++ +K K++ + + Sbjct: 116 ALSDHKDVFSPMYIHMVNAGEQTGNLDGVLKRLSEMMEKHITLKRKIKGALIYPTMVTIV 175 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + T V T + + + + + + L+I Sbjct: 176 AVGVIALIMTFVIPTFADMYSSSGMHLPLPTQIVINVSLFMKKYFLTMLIIFI 228 Score = 37.4 bits (85), Expect = 0.95, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 49/134 (36%), Gaps = 7/134 (5%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMVR 74 N I+ +G+ + DA+++ + + + E V + G +LS S++ Sbjct: 267 IANFTTILASLSSSGVDILDALSISAKTAGNLIMEETLTEVKDMVKKGENLSFSMASSGE 326 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + ++ + G L E + +S+ + + K +E + G Sbjct: 327 FPDM------VIQMAAVGEETGTLDEMMQKISQYYEEEVDNAVKNLTSMIEPILIIVLGG 380 Query: 135 SLPFCVSTLVYFTS 148 + F V ++ Sbjct: 381 IIGFLVVSMYLPIF 394 >gi|238922469|ref|YP_002935982.1| hypothetical protein EUBREC_0043 [Eubacterium rectale ATCC 33656] gi|238874141|gb|ACR73848.1| Hypothetical protein EUBREC_0043 [Eubacterium rectale ATCC 33656] Length = 258 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 25/189 (13%), Positives = 71/189 (37%), Gaps = 6/189 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRVIET 58 ++++ K ++F N L ++ ++ AG V +A + + SE R + Sbjct: 68 VRRQKEKLNEEFMNVLKVLSSNMLAGYSVENAWQEAEKEMELMYGNDSLMLSEIREMNRQ 127 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + +S L+++ FS + S + GG + + + + + + + + Sbjct: 128 IKMNQTFEAVLSEFAHRSGLEDIVNFSDIFSFAKRSGGRFVDIIESTTYRMWTKYDTNRQ 187 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 ++ + + +P + + +S YM+ L + G + + I + Sbjct: 188 IEVAVSAKRLEQKTMNYIPIFLLAFLKLSSRDYMSALYGNLIGVIFMSTCLLAYAGAIKL 247 Query: 179 MRLMINFDV 187 + + + Sbjct: 248 AKKFLQVGI 256 >gi|226309726|ref|YP_002769620.1| hypothetical protein BBR47_01390 [Brevibacillus brevis NBRC 100599] gi|226092674|dbj|BAH41116.1| hypothetical membrane protein [Brevibacillus brevis NBRC 100599] Length = 298 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 75/171 (43%), Gaps = 2/171 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQHLGLS 64 +R F A+ ++ S+R A + S+ V E+RR++E + Sbjct: 112 RRKEDFEAGNVKAIRLMASSLRTSPSYLHAFEQVATSPFLSEIVLEEYRRIVELLRAQVP 171 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L ++R +V + +T++ +Q ++GG++++ L + + R+ + +A Sbjct: 172 LEHVMNRFFERTGSADVKYLATIVHIQREMGGDMAKTLDLAASSILRRRQSLRRQKAAMA 231 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + A ++ +PF +Y +P + + L G L+ + A +LIG Sbjct: 232 QIVAQVNLLSVMPFVFVIALYVNNPNHFDPLTATIGGRFLILGSLASILIG 282 >gi|298528955|ref|ZP_07016358.1| Type II secretion system F domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298510391|gb|EFI34294.1| Type II secretion system F domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 401 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 57/169 (33%), Gaps = 7/169 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 D + AG+P+ A+ V+ Q+ + +R + V G SL +S+ + Sbjct: 61 SRDMVVFSRQFATLINAGVPILQALQVMCDQTENKILRRKLYEVKNDIEGGSSLYDSLKK 120 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 T + + GG L L L+R + +KA+V++ + Sbjct: 121 HPD-----VFDDLYTNMVDAGEAGGVLDLVLDRLARYIEKAARLKARVKSALIYPGVIIT 175 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA-FMLIGIMVM 179 + ++ + V T + + F+ ++ + Sbjct: 176 VAVAVIAIILIFVIPTFEDMFADFGGALPAPTQFVIGLSRFVSQNVLWI 224 Score = 39.7 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 13/130 (10%), Positives = 38/130 (29%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+P+ A+ ++ + + + S++E S Sbjct: 270 FSRTMSTMISSGVPILSALDIVSRTAGNKSVEHAVQ-----EAKQSITEGQSLAEPLSET 324 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 T + + G L L ++ D ++ +E ++ + Sbjct: 325 GIFPPMVTQMISIGETTGALDGMLEKIADFYDDEVDVAVDTLTSLLEPIMIVFLGVVVGG 384 Query: 139 CVSTLVYFTS 148 V ++ Sbjct: 385 LVISMYLPIF 394 >gi|315652231|ref|ZP_07905226.1| Kae1-associated kinase [Eubacterium saburreum DSM 3986] gi|315485537|gb|EFU75924.1| Kae1-associated kinase [Eubacterium saburreum DSM 3986] Length = 266 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 79/192 (41%), Gaps = 8/192 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55 K+ +KR L +F + L+ + S +G +A A + +E R + Sbjct: 77 KYRKEKRQRDLLIEFRDLLEALTTSYSSGKNTMEAFAESYQDLLSLYGEKSDIVNETRII 136 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 I + + + + L++V F++ + GG++ + + + +I+ D+ + Sbjct: 137 IAGMTNNIIIEDLLRDFAERCGLEDVESFTSTFESGLRQGGDIRQVVWDSRKIINDKIEI 196 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + +++ + E + I+ +P + + G M+ +IN P ++ A Sbjct: 197 EMEIKTMLTEKENELNIMMVMPLIIMVTLSGI--GTMSAVINTPFTVIVKIFAIGLFAAA 254 Query: 176 IMVMRLMINFDV 187 M+ R +IN + Sbjct: 255 YMMGRKIINIRI 266 >gi|167625754|ref|YP_001676048.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4] gi|167355776|gb|ABZ78389.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4] Length = 406 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 18/165 (10%), Positives = 50/165 (30%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRM 72 ++ + R+G+P+ A+A + + E + G LS ++++ Sbjct: 64 EELQIFTRQMYSLTRSGIPILRAIAGLSETTHSVRMKEALDDISAQLTSGRPLSSAMNQH 123 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L +A LS + + + +++A Sbjct: 124 PD-----VFDALFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRIKAAMRYPIFVLIA 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 I ++ +V + D + + + + + Sbjct: 179 IAIAMVILNIMVIPKFAEMFSRFGADLPWATKILINTSNLFVNYW 223 Score = 42.0 bits (97), Expect = 0.040, Method: Composition-based stats. Identities = 10/132 (7%), Positives = 35/132 (26%), Gaps = 5/132 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + AG+P++ A++++ + + + S + Sbjct: 269 LSRYCRSFSMMLSAGVPMTQALSLVADAVDNAYMH-----DRIVGMRRGIESGESMLRVS 323 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 Q + + + G + + L + + + K +E ++ Sbjct: 324 NNCQLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGFVACI 383 Query: 136 LPFCVSTLVYFT 147 + + Sbjct: 384 VLVLALGIYLPM 395 >gi|14521587|ref|NP_127063.1| hypothetical protein PAB1459 [Pyrococcus abyssi GE5] gi|5458806|emb|CAB50293.1| Bacterial type II secretion system protein F domain, putative [Pyrococcus abyssi GE5] Length = 308 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 67/180 (37%), Gaps = 4/180 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 I KR + P+A + S+RAG+ S+A+ + + +EFRR + Sbjct: 88 NFRIAKRIEEMEKALPDAFFYLAGSLRAGVSFSEALEELATAKFGALTAEFRRTVAEMKR 147 Query: 62 GLSLSESISRMV-RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +++ R V ++ + G +++ L ++ +R+ +K + + Sbjct: 148 GRPTVDALRAFALRNKKSPIVYRSMMIVIEALERGAPMADVLVSVGNDVREILRIKKERK 207 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM---NVLINDPRGHMLLGVAAAFMLIGIM 177 A + G + + ++ + + P G + L + ++ G + Sbjct: 208 ASTGMQMMFFLTSGGFVGPMIVAIVSRISEFVNTSGMQVQLPSGELKLILWLFSVIQGFV 267 >gi|320531263|ref|ZP_08032242.1| type II secretion system F domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320136530|gb|EFW28499.1| type II secretion system F domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 283 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 68/173 (39%), Gaps = 3/173 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + +P A+D +V VRAG+ + +A+ + + + VR +FR S+ R+ Sbjct: 105 EVWPEAVDTLVSGVRAGMSLPEALTNLGERGPEAVRPQFRAFATDYAASARFDSSLDRLK 164 Query: 74 RYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G +L L +LS++LR+ + +++A A + Sbjct: 165 ARFADPVADRIVEALRLAHEVGGTDLGTLLRSLSQMLREDMRTRGELEARQSWTVNGAKV 224 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + P+ V L+ T P ++L V A +I +M + Sbjct: 225 AVAAPWLVLALLS-TRPQAAAAYATTAG-AVILLVGAVVSVIAYRLMLRLGRL 275 >gi|309792339|ref|ZP_07686809.1| type II secretion system protein [Oscillochloris trichoides DG6] gi|308225654|gb|EFO79412.1| type II secretion system protein [Oscillochloris trichoides DG6] Length = 309 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 1/158 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + IKKR P+ALD++ SV AGL A+ + + D + EF++V+ Sbjct: 152 LGQQIKKRKKSITKALPDALDLLCISVEAGLAFDLALQRVTQKWDDELSREFKKVLSDIR 211 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + E++ + + +V F+ + QLG ++S+ L S +R R+ +A+ Sbjct: 212 LGRTRREALKDLGVRTGVDDVQTFTAAVIQADQLGVSMSKILRLQSDQMRQRRRQRAEEA 271 Query: 121 ALSMEAKA-SAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 A K + P ++ P M + Sbjct: 272 AQQAPIKMLFPMVFLIFPALFVVILGPAVPRIMESFGS 309 >gi|146305809|ref|YP_001186274.1| type II secretion system protein [Pseudomonas mendocina ymp] gi|145574010|gb|ABP83542.1| type II secretion system protein [Pseudomonas mendocina ymp] Length = 405 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 20/184 (10%), Positives = 53/184 (28%), Gaps = 8/184 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + K+ + ++AG+P+ + +I +R V + Sbjct: 55 LSFGKGKKIKPMDIAL--FTRQMATMMKAGVPLLQSFDIIGEGFDNPNMRKLIDEVKQEV 112 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G S + S+ + + + G L L ++ + +KAK+ Sbjct: 113 AAGNSFATSLRKKPE-----YFDELYCNLVESGEQAGALENLLDRIATYKEKTEALKAKI 167 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + A + + + V + + + + + +L + Sbjct: 168 KKAMNYPIAVIVVAVVVTAILLIKVVPQFQDVFSNFGAELPAFTQMIIGLSEILQKWWFV 227 Query: 180 RLMI 183 L+ Sbjct: 228 VLIA 231 Score = 34.7 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 38/130 (29%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + AG+P+ DA+ + G + + V T + +S + Sbjct: 275 FARTLSTTFAAGVPLVDALDSVSGATGNVVFK-----NATNKIKADVSTGMQLNFSMRTT 329 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + ++ + G L E L ++ + ME A + + Sbjct: 330 GIFPAMAVQMTAIGEESGALDEMLDKVASFYETEVDNMVDGLTALMEPMIMAVLGVLVGG 389 Query: 139 CVSTLVYFTS 148 V + Sbjct: 390 LVIAMYLPIF 399 >gi|66871270|gb|AAC23568.2| truncated type IV pilus assembly protein TapC [Aeromonas salmonicida] gi|88866545|gb|ABD57322.1| truncated TapC [Aeromonas salmonicida subsp. salmonicida A449] Length = 342 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 15/158 (9%), Positives = 44/158 (27%), Gaps = 6/158 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQ 79 I + AG+P+ ++ +I E ++ G +S+++ R R+ Sbjct: 80 RQITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSDALRRHPRH---- 135 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + G L ++ + +K+K++ + + Sbjct: 136 -FDALYCDLVEAGEQSGALETIYDRIATYREKSEALKSKIKKAMFYPAMVILVAIVVTSI 194 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + V + + + + Sbjct: 195 LLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQNWW 232 >gi|255994748|ref|ZP_05427883.1| hypothetical protein GCWU000322_00832 [Eubacterium saphenum ATCC 49989] gi|255993461|gb|EEU03550.1| hypothetical protein GCWU000322_00832 [Eubacterium saphenum ATCC 49989] Length = 250 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 78/187 (41%), Gaps = 7/187 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVA------VIVGQSSDPVRSEFRRVIETQHL 61 R AK L F + L + S + +A+ +V + E + + Sbjct: 64 RQAKMLSQFQDLLHSLSASFSVNKSMGEAIRQGRIVVELVHGKKAILAQELEIMHRSIAE 123 Query: 62 GLSLSE-SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + + ++++ F+ S + GGN+ +A+ + ++ ++ ++ +++ Sbjct: 124 NNVVDTEVWDDFAKRSGMEDIENFARTYSTCKETGGNIIKAVGDACEVISEKISISKEIK 183 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ + K II +P V TL+ + Y+ + G +++GVA +++ + ++ Sbjct: 184 AITNQKKVEGRIILIMPIVVLTLLNLFAYDYIAPMYTSSSGRVMMGVALGLLIVAVYMVE 243 Query: 181 LMINFDV 187 + V Sbjct: 244 KITRIRV 250 >gi|330960771|gb|EGH61031.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. maculicola str. ES4326] Length = 405 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 18/180 (10%), Positives = 51/180 (28%), Gaps = 18/180 (10%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73 D + ++AG+P+ + +I + +P + + G S + ++ + Sbjct: 67 DIAFFSRQMATMMKAGVPLLQSFDIISEGAENPNMRALVGSLKQEVSAGNSFATALRKKP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G L L ++ + +KAK++ A + Sbjct: 127 E-----YFDDLFCNLVDAGEQAGALESLLDRVASYKEKTEKLKAKIKKAMTYPTAVLIVA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA------------AFMLIGIMVMRL 181 + + V + L+ +A + +++ Sbjct: 182 FIVSGILLIKVVPQFQSVFAGFNAELPAFTLMVIALSEVVQQWWLAIVVLFFVTFFMLKR 241 Score = 38.2 bits (87), Expect = 0.54, Method: Composition-based stats. Identities = 14/128 (10%), Positives = 37/128 (28%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + + AG+P+ +A+ + G + + V + +S + Sbjct: 277 RTLATTFAAGVPLVEALDSVAGATGNVVFR-----NAVNQVKQDVSTGMQLNFSMRSTGV 331 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + ++ + G L L ++ + + ME A + + V Sbjct: 332 FPSLAIQMTAIGEESGALDAMLDKVATYYEEEVDNMVDSLTSLMEPMIMAVLGVIVGGLV 391 Query: 141 STLVYFTS 148 + Sbjct: 392 IAMYLPIF 399 >gi|330830592|ref|YP_004393544.1| general secretion pathway protein F [Aeromonas veronii B565] gi|328805728|gb|AEB50927.1| General secretion pathway protein F [Aeromonas veronii B565] Length = 406 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 57/178 (32%), Gaps = 8/178 (4%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66 R + + V AGL + +A+ + Q +RS V G SL+ Sbjct: 60 RRGASTAELALITRQLATLVGAGLTIEEALKAVAEQCEKAHLRSLVATVRSKVVEGYSLA 119 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ + + G+L + L L+ R++M+ K+ + Sbjct: 120 DSLGAFP-----HVFDQLFRSMVAAGEKSGHLEKVLNRLADYTEQRQHMRTKLLQAMIYP 174 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLM 182 + + + T V + G L+G + G+ + L+ Sbjct: 175 IVLTCVAIGVISILLTAVVPKVVAQFEHMGQQLPGTTRFLIGTSELMQAYGLWFLLLI 232 >gi|317154600|ref|YP_004122648.1| type II secretion system F domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316944851|gb|ADU63902.1| Type II secretion system F domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 317 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 63/149 (42%), Gaps = 4/149 (2%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSE 67 ++ P+ALD++V V +G+ + A+ + + + +EF+ + G + Sbjct: 164 AVANELPDALDLLVVCVESGMGLDQALDRVCHEMRTSGPVISAEFKLLTLELRAGKGRGD 223 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS-MEA 126 ++ + + L +++ ++++ G ++ L S +R +++ +A+ +A Sbjct: 224 ALRGLSERVGLDDLNSLTSLLVQADIFGISVGRTLRVYSDAMRTKRSQRAEEKAAKLPVL 283 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 I LP ++ +++V Sbjct: 284 LLLPLIGFILPALFIAIMGPAVILFIDVF 312 >gi|59713079|ref|YP_205855.1| general secretion pathway protein F [Vibrio fischeri ES114] gi|197336415|ref|YP_002157257.1| general secretion pathway protein F [Vibrio fischeri MJ11] gi|59481180|gb|AAW86967.1| general secretion pathway protein F [Vibrio fischeri ES114] gi|197317905|gb|ACH67352.1| general secretion pathway protein F [Vibrio fischeri MJ11] Length = 404 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 19/157 (12%), Positives = 48/157 (30%), Gaps = 7/157 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 +D + V+AG+P+ +++ + Q R + + Sbjct: 65 NDLSLITRQLATLVQAGMPLEESLKAVAEQGE----KAHIRSMMMGVRSRVIEGYPLAES 120 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G+L L L+ +R+ M++K+Q + + Sbjct: 121 FADYPHVFDDLFCSMVAAGEKSGHLDTVLNRLADYAENRQKMRSKLQQAMIYPI---MLT 177 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 +S L+ P ++ + +G + Sbjct: 178 LIAIAVISFLLATVVPKIVDQFVQMGQGLPTVTEVLL 214 >gi|120600397|ref|YP_964971.1| type II secretion system protein [Shewanella sp. W3-18-1] gi|146291671|ref|YP_001182095.1| type II secretion system protein [Shewanella putrefaciens CN-32] gi|120560490|gb|ABM26417.1| type II secretion system protein [Shewanella sp. W3-18-1] gi|145563361|gb|ABP74296.1| type II secretion system protein [Shewanella putrefaciens CN-32] Length = 406 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 19/165 (11%), Positives = 52/165 (31%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 D+ + R+G+P+ A+A + + ++ + E G LS ++++ Sbjct: 64 DELQIFTRQMYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSAMNQH 123 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L +A LS + + + +++A Sbjct: 124 PE-----VFDSLFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRIKAAMRYPIFVLIA 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 I ++ +V + D + + + + + Sbjct: 179 ITIAMVILNIMVIPKFAEMFSRFGADLPWATKVLIGTSNLFVNYW 223 Score = 40.1 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 10/135 (7%), Positives = 34/135 (25%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + AG+P++ A++++ + + + S + Sbjct: 266 RSTLSRYCRSFSMMLSAGVPMTQALSLVADAVDNAYMH-----DRIVGMRRGIESGDSVL 320 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 Q + + + G + + L + + + K +E + Sbjct: 321 RVSNQSQLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGIV 380 Query: 133 IGSLPFCVSTLVYFT 147 + + Sbjct: 381 AVIVLVLALGIYLPM 395 >gi|223940665|ref|ZP_03632506.1| type II secretion system protein [bacterium Ellin514] gi|223890677|gb|EEF57197.1| type II secretion system protein [bacterium Ellin514] Length = 425 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 23/188 (12%), Positives = 68/188 (36%), Gaps = 6/188 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ 59 M+ L++++ L + + +++G+P++ A+ + +S +++ + Sbjct: 72 MRELLERKRKPKLQELGTFTQQLANLLQSGMPLTVALNSMTHLESKGISSEVSKQLKQDV 131 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G LS+++++ S + + G L+E L LS +++K Sbjct: 132 MEGKGLSDAMAKQPLI-----FSDLYVNMVRAGEQSGALTEVLKRLSDHYERFSQVQSKF 186 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + + + F T + T + + + + + + G + Sbjct: 187 TSALIYPAFVITVGSIIMFLFMTKMLPTFMKIFEGMNIELPLPTRILIGLSHLFSGYWWL 246 Query: 180 RLMINFDV 187 ++ V Sbjct: 247 MILTVVAV 254 >gi|15606135|ref|NP_213512.1| fimbrial assembly protein PilC [Aquifex aeolicus VF5] gi|2983312|gb|AAC06902.1| fimbrial assembly protein PilC [Aquifex aeolicus VF5] Length = 408 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 21/162 (12%), Positives = 51/162 (31%), Gaps = 6/162 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 D+ + V AG+ + +A+ ++ Q + +R + G S+ +++++ Sbjct: 66 ERDWSLLCRQLSVLVGAGVSIVEAIELVAEQMQNKKLRKALMETAKDIEEGSSIHDALAK 125 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 F + + G L L + +K K+++ S Sbjct: 126 -----RKNIFPEFLINLVEVGEETGELDLVLRRAAEYYEKIAFIKGKIKSASFYPTFVMI 180 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 ++ + + T V L L + + L Sbjct: 181 FATAIVWFILTFVVPKFAEIYKSLGGTLPAPTQLLIDISLTL 222 Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 10/135 (7%), Positives = 36/135 (26%), Gaps = 7/135 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 F + +G+P+ + + P+ + G +L ++ Sbjct: 272 AFARFARTMATLFASGVPLERVLEISGRVVGFIPIEKALNEARKEVLEGKNLWMALQN-- 329 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G + + L +++ + + + +E + Sbjct: 330 ----TEMFPKMIIAMVRVGEETGQMDQMLNSIANFYEEEVDRSIEGLVALIEPALIVILG 385 Query: 134 GSLPFCVSTLVYFTS 148 + + L Sbjct: 386 VIIGAILIALYLPIF 400 >gi|55980763|ref|YP_144060.1| pilus assembly protein PilC [Thermus thermophilus HB8] gi|55772176|dbj|BAD70617.1| pilus assembly protein PilC [Thermus thermophilus HB8] Length = 406 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 18/157 (11%), Positives = 49/157 (31%), Gaps = 5/157 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D + + AGL + A+A++ Q+ + E + + + ++ Sbjct: 65 KDLAIFSRQLATMLGAGLTLLQALAILERQTENRKFREILKQVR-----TDVEGGMAFSE 119 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + S + + G L L L+ L ++ K+++ Sbjct: 120 ALSKHKIFSRLYVNLVRAGETSGGLDLILDRLASFLEKELELRGKIRSAMTYPVIVFVFA 179 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + + + T + + L ++ +A + Sbjct: 180 VGVAYFLLTGIVPQFAQILTDLGSELPLLTRFLIAVS 216 Score = 38.6 bits (88), Expect = 0.44, Method: Composition-based stats. Identities = 10/130 (7%), Positives = 37/130 (28%), Gaps = 4/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+ + +A+ + G + + V E + + + Sbjct: 272 FSRTLALLLSSGVNIVEALDITKGTAGNSVVEEIVEAAKLKIQQGDP----LNLTLAQHP 327 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G L L+ ++ + ++E ++ + Sbjct: 328 FVFPPMVSSMVAIGEETGALDTMLSKVADFYEREVDEAVASLTAAIEPLMIIFLGVIVGM 387 Query: 139 CVSTLVYFTS 148 V+ + Sbjct: 388 IVAGMFLPLF 397 >gi|119714630|ref|YP_921595.1| type II secretion system protein [Nocardioides sp. JS614] gi|119535291|gb|ABL79908.1| type II secretion system protein [Nocardioides sp. JS614] Length = 258 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 58/162 (35%), Gaps = 6/162 (3%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV-RYM 76 + +++ + AG P +A+ RV E +G + ++ + Sbjct: 90 DTCELLAGELTAGRPPGEALQRAAASWPPL-----ARVAEAFRVGADVPSALRVLAADLE 144 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 +++ + V + G L+ A+ ++ LR + V A+A+A ++ L Sbjct: 145 GARDLRVVAAAWQVAHRTGQGLASAVERVAESLRAGAATRRMVTGELGSARATARLVAGL 204 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 P + L+ P G + L AF L G+ Sbjct: 205 PVLALAMGSGAGGDPWGFLLGHPAGLLCLAGGLAFGLAGLWW 246 >gi|94312325|ref|YP_585535.1| general secretion pathway protein F [Cupriavidus metallidurans CH34] gi|93356177|gb|ABF10266.1| general secretory pathway component, cryptic [Cupriavidus metallidurans CH34] Length = 405 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 19/173 (10%), Positives = 55/173 (31%), Gaps = 8/173 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSL 65 +R + + + +GLP+ +A+ + Q+ E + G SL Sbjct: 61 RRLSTQEQAL--FTRQLASLIVSGLPLDEALGALADQAERQYVHELLAGIRAEVMGGSSL 118 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S ++++ + + + + G+L L L+ + R + +K++ Sbjct: 119 SVALAQHPK-----DFPDIYRALVSAGEHSGHLGMVLERLATYIETRNTLTSKIRLAFTY 173 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + ++ + + V ++ +A + + Sbjct: 174 PAIVTVVAFAIVIFLLSYVVPQVVSVFANTKQKLPTLTVIMLALSDFVRNWWW 226 Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + V AG+P+ ++ ++ G SL+ +++ ++ P Sbjct: 274 FASTLSILVSAGVPILRSLQAAGETLTNQALKANVEDATTRVREGASLARALAAQNQFPP 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + GNL L + + +E + + Sbjct: 334 ------VLVHLIRSGEATGNLPTMLDRAATGEGQELERRTLFLTSLLEPLLILTMGVVVL 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 MIVLAVLMPI 397 >gi|92114297|ref|YP_574225.1| type II secretion system protein [Chromohalobacter salexigens DSM 3043] gi|91797387|gb|ABE59526.1| type II secretion system protein [Chromohalobacter salexigens DSM 3043] Length = 410 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 21/165 (12%), Positives = 52/165 (31%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRM 72 D + +RAG+P+ A +V+ + ++ G S SE++++ Sbjct: 71 QDITLFARQMATMIRAGIPLLQAFSVVSESLKRPAMHHLIETLMNEVSAGASFSEALAQH 130 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 ++ + + G+L L ++ +++A+V+ A + Sbjct: 131 PQH-----FDRMFVNMVEAGEQSGSLDRMLERVASYKEKIDSLRARVRKALYYPAAVVLV 185 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + V D L +A + + Sbjct: 186 GMGVTALLLVKVVPQFESLFRGFGADLPAFTQLTIALSQWVQAYW 230 >gi|77361606|ref|YP_341181.1| mannose-sensitive agglutinin (MSHA) biogenesis protein MshG (pilus type IV) [Pseudoalteromonas haloplanktis TAC125] gi|76876517|emb|CAI87739.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshG (pilus type IV) [Pseudoalteromonas haloplanktis TAC125] Length = 406 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 20/171 (11%), Positives = 55/171 (32%), Gaps = 6/171 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72 +D + ++AG+P+ A+ + + + V + G LS + Sbjct: 65 EDMIMFSRQMYSLLKAGIPIIRAMVGLADTTQNKAFKQVLMEVTKQLEQGRDLSSA---- 120 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 M + S + + + + G L +A L+ + + +++A Sbjct: 121 -MSMHNKVFSRLTISMVMVGEGAGRLEDAFYQLAIYFEKEQETRKRIKAAMRYPTFVICA 179 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + ++ V T D + +A + + + +++ Sbjct: 180 LVGAMIILNIFVIPTFASMFAKFNADLPLMTQILIATSNFFVNYWWLLILM 230 >gi|117922092|ref|YP_871284.1| type II secretion system protein [Shewanella sp. ANA-3] gi|117614424|gb|ABK49878.1| type II secretion system protein [Shewanella sp. ANA-3] Length = 406 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 22/178 (12%), Positives = 57/178 (32%), Gaps = 8/178 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 + L K++ LD+ + R+G+P+ A+A + + ++ + E Sbjct: 53 LAQLFKRKVG--LDELQIFTRQMYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQL 110 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G LS ++++ + + G L +A LS + + + ++ Sbjct: 111 TAGRPLSSAMNQHPD-----VFDSLFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRI 165 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 +A I ++ +V D + + + + + Sbjct: 166 KAAMRYPIFVLIAIALAMVILNIMVIPKFAEMFARFGADLPWATKVLIGTSNLFVNYW 223 Score = 39.3 bits (90), Expect = 0.21, Method: Composition-based stats. Identities = 9/135 (6%), Positives = 35/135 (25%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + AG+P++ A++++ + + + + S + Sbjct: 266 RSTLSRYCRSFSMMLSAGVPMTQALSLVADAVDNAYMHDKIVGMRR-----GIESGESML 320 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G + + L + + + K +E + Sbjct: 321 RVSNQSKLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGIV 380 Query: 133 IGSLPFCVSTLVYFT 147 + + Sbjct: 381 AAIVLVLALGIYLPM 395 >gi|218961672|ref|YP_001741447.1| type IV pilus biogenesis protein PilC [Candidatus Cloacamonas acidaminovorans] gi|167730329|emb|CAO81241.1| type IV pilus biogenesis protein PilC [Candidatus Cloacamonas acidaminovorans] Length = 417 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 22/171 (12%), Positives = 54/171 (31%), Gaps = 6/171 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + AGL + A++ + + S R++ + G SLSE++ + Sbjct: 74 KSLVFFTRQLSTMFSAGLTIEKAISDLEKEEKSKKFAKVLRKLSDDIRKGYSLSEAMQQH 133 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + ++ G L L L+ L ++ + KV + Sbjct: 134 P-----GVFNPLYIALVTAGEVSGTLHTVLDELADYLEKMEDTRRKVYSALAYPIFIVIF 188 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + + + + D L + + + + M ++I Sbjct: 189 LCFVVWGMFYYIIPMFADVYANFHADLPAPTTLAINISHFITNNVFMFIVI 239 >gi|256397304|ref|YP_003118868.1| type II secretion system protein [Catenulispora acidiphila DSM 44928] gi|256363530|gb|ACU77027.1| type II secretion system protein [Catenulispora acidiphila DSM 44928] Length = 303 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 62/174 (35%), Gaps = 2/174 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + + ++ + + A+ +S +R +++ + L +++ Sbjct: 105 EALAGWTESLRDTIAGAVGLEQAIPATARAASPAIRENLHTLVDRLRARMPLPQALEYFA 164 Query: 74 RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 M + + ++ G L E L L++ R+ +M+ +V A + S I Sbjct: 165 DDMDDASADLVIAALILNARLRGPGLREVLGALAQSSREEVDMRQRVMAQRSSTRRSVQI 224 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + + V + + ++ + G ++L G +R + + + Sbjct: 225 VVGVSVAVVLGLAVFNKSFVQP-YSTATGQLVLLGVIGLFAAGFFWLRKLSSIE 277 >gi|297568843|ref|YP_003690187.1| Type II secretion system F domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296924758|gb|ADH85568.1| Type II secretion system F domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 402 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 19/165 (11%), Positives = 51/165 (30%), Gaps = 6/165 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AGLP+ ++ ++ Q +P + + V G + ++S+ + Sbjct: 68 FTRQLSTMIDAGLPLVQSLQILGDQQENPTFKKVLKEVRTDVETGSTFADSLKKHPEI-- 125 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++GG L + L+ + + ++ KV+ I + Sbjct: 126 ---FDNLYCNMMEAGEVGGILDTICSRLAVFMEKSQALQKKVKGAMTYPIICLAISLIVM 182 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + V + + V + + L+ Sbjct: 183 AVMLIFVVPVFEEMFADFGSALPAPTQVVVNFSEFAQSYFIYMLI 227 Score = 40.1 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 12/130 (9%), Positives = 39/130 (30%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + +++G+P+ +++ V+ + + V R V+ + Sbjct: 271 FSRTLGTMLQSGVPILESLRVVARTAGNKV--IERSVLRVTDSIREGRAIAEPLAETGVF 328 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L L ++ + + + ++E ++ G + Sbjct: 329 PG---MVVQMINVGEATGALDTMLVKIADFYDEEVDQAVENLTAAIEPLMMVFLGGMIGG 385 Query: 139 CVSTLVYFTS 148 V + Sbjct: 386 LVVAMYLPIF 395 >gi|313679704|ref|YP_004057443.1| type II secretion system f domain [Oceanithermus profundus DSM 14977] gi|313152419|gb|ADR36270.1| Type II secretion system F domain [Oceanithermus profundus DSM 14977] Length = 406 Score = 69.0 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 54/158 (34%), Gaps = 10/158 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 D + + AGLP+ A+A++ Q+ + + + + G S S+++++ Sbjct: 65 KDVAIFSRQLATMLSAGLPIVQAIAILERQTENKAFQKLLKEIRTDVEGGSSFSDALTKH 124 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + S + + G L L L+ L ++ K+++ + Sbjct: 125 ------KVFSRLYVNLVRAGETSGTLDGVLDRLATFLEKDLELRGKIKSAMTYPV---IV 175 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + L+ P + +L + LL Sbjct: 176 LVFALLVTYFLLTGIVPQFAQILTDLGSELPLLTRFLI 213 >gi|298674469|ref|YP_003726219.1| type II secretion system F domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298287457|gb|ADI73423.1| Type II secretion system F domain protein [Methanohalobium evestigatum Z-7303] Length = 750 Score = 69.0 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 70/169 (41%), Gaps = 4/169 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 KR K +FP+ L + +V G+ + D++ ++V ++ + E R++ + G+ Sbjct: 528 KSKRQKKLDGNFPDFLKKLASTVETGMTLQDSIKLMVKTDNEGLSDETRKIWKDISWGME 587 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L++++ R + Q VS T+I+ ++ G++ E L +R + MK + M Sbjct: 588 LNDALVRFANRLKTQVVSRSMTLITKANESSGDIGEVLMVAARDASSEEEMKRERSMNMM 647 Query: 125 EAKASAWIIGSLPFCVSTLVYFTS----PGYMNVLINDPRGHMLLGVAA 169 +I + V ++ T + + M + + Sbjct: 648 IYIVIIYISYMVFVGVIYVISTTFLTEMAEAGEQMTSSGAQQMGMLGSF 696 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 25/186 (13%), Positives = 60/186 (32%), Gaps = 7/186 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQH 60 +R P A+ + + G+ + + + + E +I Sbjct: 209 FQASERKRNIDSHLPYAVTFMYALSKGGMNIINVFDSLSRSSNTYGEASKEVETIIREMD 268 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 L +IS + P + GG++S+ + S + K Sbjct: 269 YFGHDLRTAISNVSEMTPSDRFQDLLHNLLTVIDSGGSISKYFQDKSDQYLKKAIDDQKG 328 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ A +++ + + ++ G M ++ M+ V A + IG ++ Sbjct: 329 FLETLGLLAESYVTAFVAGPLFIIIM----GIMMTVMGSGSILMVYAVIYAVLPIGSVMF 384 Query: 180 RLMINF 185 +MI+ Sbjct: 385 VVMISI 390 >gi|20094142|ref|NP_613989.1| hypothetical protein MK0705 [Methanopyrus kandleri AV19] gi|19887149|gb|AAM01919.1| Predicted membrane protein [Methanopyrus kandleri AV19] Length = 325 Score = 69.0 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 73/185 (39%), Gaps = 15/185 (8%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R ++ P+AL +V +RAGL + + + + + EFR V+ G + E Sbjct: 102 RIKDIEENLPDALRQMVEELRAGLSIFETIRNVAESDYGELSREFRIVVRDMDTGKTFEE 161 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +I M + + ++ + S GG L++ L + +R+ + ++ + +A++ Sbjct: 162 AILDMAERVNSELLTRAVRLTVRISMSGGALADVLEAVENDIREVRRIELERKAITTMPC 221 Query: 128 ASAWIIGSL----------PFCVSTLVYFTSPGY-MNVLI---NDPRGHMLLGVAAAF-M 172 + + G + ++ P Y M + DP L + M Sbjct: 222 LALALGGLISGLPVGVSIGAVIGVAMMERMGPTYAMLPMYLQAKDPLASYPLVLGLLSGM 281 Query: 173 LIGIM 177 IGI+ Sbjct: 282 AIGII 286 >gi|18977365|ref|NP_578722.1| hypothetical protein PF0993 [Pyrococcus furiosus DSM 3638] gi|18893046|gb|AAL81117.1| hypothetical protein PF0993 [Pyrococcus furiosus DSM 3638] Length = 355 Score = 69.0 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 74/180 (41%), Gaps = 3/180 (1%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R A+ P L I + AG+ +++A + + EF +++ H G S Sbjct: 173 RRRVAEVEKALPYVLRHIASLLSAGIGIAEAFVSVAKADYGVISEEFYLIVQDMHKGASF 232 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++S+ M + V+ + I + GGNL++ L ++ +K + Sbjct: 233 EDALSKFEMKMASENVTRVTKQILRAIKFGGNLADILYKMADEFAFEYRLKLMEYVQKIN 292 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMN-VLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + ++ S+ +V + ++ L+ G + + + A ML ++M MI Sbjct: 293 GLSFVYMFLSVIMPTLFIVVILAGSILSRTLVISIPGLVAIMLFAFPML--SLIMITMIK 350 >gi|332710092|ref|ZP_08430045.1| type II secretory pathway, component PulF [Lyngbya majuscula 3L] gi|332351050|gb|EGJ30637.1| type II secretory pathway, component PulF [Lyngbya majuscula 3L] Length = 405 Score = 69.0 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 22/170 (12%), Positives = 59/170 (34%), Gaps = 6/170 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 V AG+ + + V+ Q S+ ++ + G +LS+++ + Sbjct: 70 FSRQFAAMVNAGVAIVRCLGVLGEQCSNPKLKKALMNISAEVQQGTNLSDAMRKHPDC-- 127 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++GG L E L L+++L D ++ ++++ ++ + Sbjct: 128 ---FDNLYVSMVQAGEVGGVLDEVLNRLAKLLEDMNRLQNQIKSAMAYPSVVGFLALLVF 184 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 ++ + G L + + + +L V+ + V Sbjct: 185 LAMTMFLIPIFAGIFQDLGTELPALTKFMLWLSGILRSWKVLIPIAVIIV 234 Score = 38.2 bits (87), Expect = 0.53, Method: Composition-based stats. Identities = 12/134 (8%), Positives = 41/134 (30%), Gaps = 7/134 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + R+G+P+ +++ ++ + + + + G +S ++ R Sbjct: 274 FCRVFGSLTRSGVPILNSLDIVRDTAGNQVISNAINSAKNEIQQGGMISLALQR------ 327 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L + ++ D K +E + G + Sbjct: 328 ENIFPPLAIQMISIGEETGELDSMVMKVADFYEDEVEQAVKALTSILEPIMIVVLGGMVG 387 Query: 138 FCVSTLVYFTSPGY 151 + ++ + Sbjct: 388 VILISMYLPMFKVF 401 >gi|291526237|emb|CBK91824.1| hypothetical protein EUR_28790 [Eubacterium rectale DSM 17629] Length = 247 Score = 69.0 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 24/189 (12%), Positives = 71/189 (37%), Gaps = 6/189 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRVIET 58 ++++ K ++F N L ++ ++ AG V +A + + SE + + Sbjct: 57 VRRQKEKLNEEFMNVLKVLSSNMLAGYSVENAWQEAEKEMELMYGNDSLMLSEIQEMNRQ 116 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + +S L+++ FS + S + GG + + + + + + + + Sbjct: 117 IKMNQTFEAVLSEFAHRSGLEDIVNFSDIFSFAKRSGGRFVDIIESTTYRMWTKYDTNRQ 176 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 ++ + + +P + + +S YM+ L + G + + I + Sbjct: 177 IEVAVSAKRLEQKTMNYIPIFLLAFLKLSSRDYMSALYGNLIGVIFMSTCLLAYAGAIKL 236 Query: 179 MRLMINFDV 187 + + + Sbjct: 237 AKKFLQVGI 245 >gi|283778864|ref|YP_003369619.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283437317|gb|ADB15759.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 361 Score = 69.0 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 64/153 (41%), Gaps = 3/153 (1%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHL 61 +KR + + + LD++ + G+P+S ++ + ++ +++ Q Sbjct: 155 FRRRKRLTEINNGLADMLDMLGMCLSGGMPLSASLDHVAKNLTNYPALADELLIMKRQAE 214 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 SL +++ + EV ++++S QLG ++S L + + R + A +QA Sbjct: 215 VSSLKHALADFANRLDTPEVRQVASLLSRGDQLGSSISRNLLDQADHFRTARRQMATMQA 274 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + ++ V L+ SP +M + Sbjct: 275 NRTPVFLTFPLMFCFAPAVLILL--MSPSFMQL 305 >gi|328950485|ref|YP_004367820.1| Type II secretion system F domain protein [Marinithermus hydrothermalis DSM 14884] gi|328450809|gb|AEB11710.1| Type II secretion system F domain protein [Marinithermus hydrothermalis DSM 14884] Length = 406 Score = 69.0 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 19/171 (11%), Positives = 56/171 (32%), Gaps = 7/171 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72 D + + AGLP+ A+A++ Q+ + + + G S+++ + Sbjct: 65 KDVAIFSRQLATMLSAGLPIVQALAILERQAENKKFKGILKEIRTDVEGGEPFSDALKKH 124 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G L L L+ L ++ K+++ Sbjct: 125 SA------FTRLYINLVRAGETSGTLDLVLERLATFLEKELELRGKIRSAMTYPAIVLVF 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + + + + L ++ +A + +L + +++ Sbjct: 179 AIGVTYFLLAGIVPQFAQILTDLGSELPVLTRFLIAVSDLLRAYTWVFVLL 229 >gi|116328307|ref|YP_798027.1| Type II secretory pathway component, protein F [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331033|ref|YP_800751.1| Type II secretory pathway component, protein F [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121051|gb|ABJ79094.1| Type II secretory pathway component, protein F [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124722|gb|ABJ75993.1| Type II secretory pathway component, protein F [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 408 Score = 69.0 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 6/168 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 + + + AG+P+ +++ IV Q+ + R + G SLSE++ + Sbjct: 66 RKEVGLFSRQLATLLGAGIPLDKSLSSIVEQTENQNFRKVLTGMQANITEGSSLSEAMKK 125 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P Q + + G+ L L+ + +KAKVQ + Sbjct: 126 HPDVFPSQ-----FPSLVAVGEKTGDYEATLTRLAELEEKSSELKAKVQVAMVYPFIMGS 180 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + + T+V + + + +LIG + Sbjct: 181 LSIFVTIFLLTVVIPQIQELFLQFDAKLPLITRIVIGVSDILIGFWWL 228 >gi|205374338|ref|ZP_03227136.1| hypothetical protein Bcoam_14529 [Bacillus coahuilensis m4-4] Length = 403 Score = 69.0 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 56/179 (31%), Gaps = 21/179 (11%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 L + AG+ V DA ++ Q+ P+R V + G +S+++S+ Sbjct: 67 FLRQFATLLEAGVTVVDATKILSEQTESKPLRKALIEVEKEIRDGNPISDALSQ-----H 121 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G+L E L L+ + K K+ + I + Sbjct: 122 KKIFEPMFVNMMRAGEATGSLDETLNMLAVHYEKQYQTKQKIVSALAYPAVVGLIAIGVV 181 Query: 138 FCVSTLVYFTSPGYMNVLINDPRG---------------HMLLGVAAAFMLIGIMVMRL 181 + V T G + D L+ + IG + +R Sbjct: 182 IFLLVAVVPTFVGMFDDFGGDLPAITKFVIGSSEWMQKYWYLVVAFMILLAIGFVFLRQ 240 Score = 38.2 bits (87), Expect = 0.62, Method: Composition-based stats. Identities = 16/136 (11%), Positives = 37/136 (27%), Gaps = 5/136 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + V + +P+ A+++ + RV+ L SL S Sbjct: 267 LARMTRTMSSLVSSSVPILQAISICEKVVEN---EVVSRVLAQSRL--SLERGTSFTDPM 321 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 T + + G+L L ++ +E + Sbjct: 322 RKHWAFPPLVTQMIAIGEETGSLDAMLGKVADFYEKEVEAGTDRLKSLIEPLMIVVLAAL 381 Query: 136 LPFCVSTLVYFTSPGY 151 + VS+++ + Sbjct: 382 VGTIVSSILVPMFEVF 397 >gi|17545369|ref|NP_518771.1| tight adherence TadC-related transmembrane protein [Ralstonia solanacearum GMI1000] gi|17427661|emb|CAD14180.1| probable pilus assembly tadc transmembrane protein [Ralstonia solanacearum GMI1000] Length = 315 Score = 69.0 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 74/164 (45%), Gaps = 3/164 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + IK R + + FP++LD+I+ V AGL + A+ +V + E+ + Sbjct: 151 LSLKIKYRQREIFESFPDSLDLIMVCVEAGLSLDAAILRVVDDMRTARPVMAEEYELLTL 210 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GLS +++ + + +VS ++ + G +++++L S +LR +++M A Sbjct: 211 ELRAGLSREKALRNLAARTGVDDVSMLVAMLIQADRFGTSVADSLRVHSDMLRTKRHMLA 270 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + +A + K +I + + ++ + M + P G Sbjct: 271 EERAAKIGTKVLFPLIFCIFPSLYVVLLGPAALQMIAALGAPGG 314 >gi|313126950|ref|YP_004037220.1| archaeal flagella assembly protein j [Halogeometricum borinquense DSM 11551] gi|312293315|gb|ADQ67775.1| archaeal flagella assembly protein J [Halogeometricum borinquense DSM 11551] Length = 719 Score = 69.0 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L K+R + P+ LD + AG+ V ++ + P+ E RR G Sbjct: 490 LRKRRLKAIEREMPDFLDRMASVNEAGVTVVKSLHRLAQSDLGPISEELRRTWRDIQWGA 549 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 SL ++ R + VS T+I G ++ L + +D + + + + Sbjct: 550 SLRNALRGFDRRAQVPMVSRAVTLIMNAVAASGEVAPVLRIAANEAQDSRRLLRERRQEM 609 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTS 148 M +I + + + Sbjct: 610 MTYLVVIYISFFVFLGIVVALTLAF 634 Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 55/181 (30%), Gaps = 4/181 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIET 58 + + R + P + I R+G+P +A + EF + Sbjct: 158 LDQRARARRVQIDAALPQTIAFIYALSRSGMPFQKVLATLTENQHVYGEAAREFGVAVND 217 Query: 59 QHLGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L ++ RM P Q + F+ ++ G +LS L + + Sbjct: 218 VQTFGTDLPTALRRMAERTPSQRLDDFTENLTSVLTSGQSLSAFLHEQYDRFQAESEAQQ 277 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + A ++ + + + G + P +++ + + + Sbjct: 278 QQYLELLATFAEVYVTVLVAGPLFLITILVVVGLVMQ-DTLPLLRVIIYLGLPLASVAFV 336 Query: 178 V 178 V Sbjct: 337 V 337 >gi|227327076|ref|ZP_03831100.1| type IV pilin biogenesis protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 401 Score = 69.0 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 63/180 (35%), Gaps = 17/180 (9%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 + + + ++AGLP+ +A+ ++ Q R R V G S SE++ Sbjct: 58 REQLGELIKQLAALLQAGLPLLEALKLVSEQHERPGWRCVLRDVRTHVAQGNSFSEALQE 117 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P+ + +L G L E L++ + ++ KV + Sbjct: 118 YPHIFPV-----LYRSLIAVGELTGKLDECCLQLAQQQEKQSRLQQKVIKALRYP---CF 169 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHM---LLGVAAAFM---LIGIMVMRLMI 183 ++ ++ P + + + P LL +A IG++V+ +I Sbjct: 170 VLAIAIVVSMMMLTLVLPEFATLYSSFDTPLPWFTRQLLNLAGIITDYGFIGLLVLSGLI 229 >gi|291333378|gb|ADD93083.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S05-C205] Length = 529 Score = 69.0 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 52/140 (37%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 + + FP+ L + + GL ++ A+ + + E +++ + G+ S+ Sbjct: 277 KNEVEEKFPDFLRDLAEYWKGGLSMTVAIQTLATSEYGALNDEVKKMSDQLSWGIKFSDV 336 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 I + + V +I+ + GG +S+ L + R+ K ++ + + A Sbjct: 337 IKQFADRVGTPLVQRAIALIAEADRAGGKISDILVTAANDSRELKFLEGERKRAIGSYIA 396 Query: 129 SAWIIGSLPFCVSTLVYFTS 148 W + V + Sbjct: 397 VIWTSYFVFLGVIVTLAVVF 416 >gi|209522190|ref|ZP_03270831.1| general secretion pathway protein F [Burkholderia sp. H160] gi|209497381|gb|EDZ97595.1| general secretion pathway protein F [Burkholderia sp. H160] Length = 405 Score = 69.0 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 59/183 (32%), Gaps = 12/183 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + + +R + + AGLP+ +A+AV+ QS D +R + Sbjct: 59 LGRRLSQREQAI------LTRQLASLLIAGLPLDEALAVLTEQSERDYIRELMAAIRAEV 112 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SL+ ++ + + + + + G L L+ L+ + R +K K+ Sbjct: 113 LGGHSLANALQQHPK-----DFPEIYRALVAAGEHTGKLGLVLSRLADYIEQRNALKQKI 167 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 I + + + V ++ +A + + Sbjct: 168 VLAFTYPTIVTIIAFGIVTFLLSYVVPQVVNVFASTKQQLPFLTVVMMALSGFVRHWWWA 227 Query: 180 RLM 182 L+ Sbjct: 228 MLI 230 Score = 38.2 bits (87), Expect = 0.52, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ S+ E I G SLS ++ + P Sbjct: 274 FASTLGILTAAGVPILRALQAAAETLSNNAMRENIDDAIVRVREGTSLSRALGNTKTFPP 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+++ L + + +E + G + Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAADGEARELERRTMFLTSLLEPLLILAMGGVVL 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 VIVLAVMLPI 397 >gi|261409011|ref|YP_003245252.1| Type II secretion system F domain-containing protein [Paenibacillus sp. Y412MC10] gi|261285474|gb|ACX67445.1| Type II secretion system F domain protein [Paenibacillus sp. Y412MC10] Length = 285 Score = 69.0 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 76/183 (41%), Gaps = 8/183 (4%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFRRVIETQHLGLS 64 F AL + S+ AG V + V S + E + ++ G Sbjct: 104 LNLHFKQALYSLSSSLSAGRSVENGFRDAVQDLLLLDPGGSSDLIFELKVIVSRLEYGEP 163 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ R +++++ F+ V S + GG+L E + S ++ ++ +++ ++ + Sbjct: 164 IEVALQDFARRAGMEDLTNFADVFSTCKRTGGDLVEVVRRTSSVIGEKLDIQQEISVMIA 223 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + + + + + PF + + TSP YM + G M+ A A + + + M+N Sbjct: 224 QKRFESKALLAAPFLLLLFMNMTSPDYMEPMY-SGSGFMISTFALAALGGCFLWITKMMN 282 Query: 185 FDV 187 V Sbjct: 283 IKV 285 >gi|317403494|gb|EFV83999.1| hypothetical protein HMPREF0005_03141 [Achromobacter xylosoxidans C54] Length = 303 Score = 69.0 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 72/168 (42%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + P LD IVR V G ++ A + +P+R L ++ ++ Sbjct: 136 VSQLPAFLDNIVRLVTIGNSMAAAFQTAAASTDEPLREVVETAAALSRSAKELDAALVQV 195 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R ++E+ + V+SV + GG + L ++ +RD +A++ A S E + SAWI Sbjct: 196 SRQYDMKELYMVAAVVSVALRFGGRSDQVLERMAAFMRDIGQARAELSASSAEIRLSAWI 255 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + LP ++ + + L DP G +L A + G ++ Sbjct: 256 LALLPLGIAGFIMVANNDLFMGLWVDPLGFKMLLTAVCLQVAGSYILY 303 >gi|223940083|ref|ZP_03631947.1| type II secretion system protein [bacterium Ellin514] gi|223891268|gb|EEF57765.1| type II secretion system protein [bacterium Ellin514] Length = 403 Score = 69.0 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 51/143 (35%), Gaps = 6/143 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72 D + + AGL + ++ + Q+++ V + V G S SE++ + Sbjct: 61 ADLVIFTRQLATMLDAGLAMVQSLQALAEQTTNKVMRDVIKDVTARVEAGDSFSEALVKH 120 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + GG LSE LA L+ L + ++ KV++ M + Sbjct: 121 PK-----VFNRLYVCMVGAGEKGGLLSEILARLATYLENAARLRRKVKSAMMYPTVVTCV 175 Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155 S+ + V Sbjct: 176 AISITIFLMVKVVPVFGEIFESF 198 >gi|85712727|ref|ZP_01043772.1| Type II secretory pathway, component PulF [Idiomarina baltica OS145] gi|85693459|gb|EAQ31412.1| Type II secretory pathway, component PulF [Idiomarina baltica OS145] Length = 408 Score = 69.0 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 21/184 (11%), Positives = 56/184 (30%), Gaps = 8/184 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + +R D + V + LP+ + + QS P + + Sbjct: 58 RWRRVRRVKA--QDLALITRQLSTLVNSALPIEQCLLAVADQSEKPRMKQLLMAVR---- 111 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + T + + G+L + L L+ R++MK+++ Sbjct: 112 SKVVEGYGLAEAMAEYPGVFDSLYTAMVAAGEKSGHLDQVLDELADYTEQRQHMKSQLTQ 171 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVM 179 + + S+ + + + L P ++G++ G+ ++ Sbjct: 172 ALVYPVMLTLVAISIVIFLLVSIVPQIVHNFSTLGQTLPPTTQFMIGLSEFLQNWGLFIL 231 Query: 180 RLMI 183 ++ Sbjct: 232 AGIV 235 >gi|151066|gb|AAA25733.1| pilin biogenesis protein (pilC) [Pseudomonas aeruginosa] Length = 406 Score = 69.0 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 19/174 (10%), Positives = 51/174 (29%), Gaps = 7/174 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + + AG+P+ + +I +R + + G SL+ S+ + Sbjct: 67 DIALFTRQMATMMGAGVPLLQSFDIIGEGFDNPNMRKLVDEIKQEVSSGNSLANSLRKKP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G L L ++ +++KAK++ A + Sbjct: 127 Q-----YFDELYCNLVDAGEQSGALENLLDRVATYKEKTESLKAKIKKAMTYPIAVIIVA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + + V + + V + +++ + Sbjct: 182 LIVSAILLIKVVPQFQSVFEGFGAELPAFTQMIVNL-SEFMQEWWFFIILAIAI 234 Score = 38.2 bits (87), Expect = 0.49, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 45/129 (34%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG+P+ DA+ + G + + V ++ + G+ L+ S+ Sbjct: 277 RTLSTTFAAGVPLVDALDSVSGATGNIVFKNAVSKIKQDVSTGMQLNFSMRTTS------ 330 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + ++ + G+L E L+ ++ + + ME A + + Sbjct: 331 VFPNMAIQMTAIGEESGSLDEMLSKVASYYEEEVDNAVDNLTTLMEPMIMAVLGVLVGGL 390 Query: 140 VSTLVYFTS 148 + + Sbjct: 391 IVAMYLPIF 399 >gi|302872319|ref|YP_003840955.1| Type II secretion system F domain [Caldicellulosiruptor obsidiansis OB47] gi|302575178|gb|ADL42969.1| Type II secretion system F domain [Caldicellulosiruptor obsidiansis OB47] Length = 403 Score = 69.0 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 20/149 (13%), Positives = 49/149 (32%), Gaps = 9/149 (6%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLS 66 R + D + AG+P+ A+ VI Q + + G LS Sbjct: 57 RKKIPIKDLAVFCRQFATMLMAGIPMVSALDVIAEQFKGRYFGKVLEDIHKKVQSGSMLS 116 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ P + ++ G++ +AL ++ ++ K+ + Sbjct: 117 RALAEKAECFP-----TILINMIEAGEMSGSVDQALDRMATHFEKELKLRQKIINALIYP 171 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 +I + ++ F P ++ + Sbjct: 172 A---IVILVAIGVLIIMLTFVVPTFVGIF 197 Score = 34.7 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+ + A+ ++ V +F VIE G LS I+ + Sbjct: 271 FTRTLGTMTAAGVSIVIALETTKNVMTNVFVEKKFEEVIERVQKGEGLSYPIADVG---- 326 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + GNL L + + + E + + Sbjct: 327 --IFPRLVEIMIRTGEESGNLEYMLNKAADYYENEVENQVTRLTSVFEPIMIVLLAIMVG 384 Query: 138 FCVSTLVYFTS 148 F +++++ Sbjct: 385 FLLASIILPIF 395 >gi|257057541|ref|YP_003135373.1| Flp pilus assembly protein TadB [Saccharomonospora viridis DSM 43017] gi|256587413|gb|ACU98546.1| Flp pilus assembly protein TadB [Saccharomonospora viridis DSM 43017] Length = 282 Score = 69.0 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 61/174 (35%), Gaps = 5/174 (2%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D + L +V +RAG AV + ++ P+ R + + + Sbjct: 104 DLASLLRGVVTELRAGAHPVTAVENVAREAPRPLADRLRGLAASARFSGVPTAEPEVRAA 163 Query: 75 YMPLQEVS-----FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 P E +T ++ ++ G L++ + R + ++ A +A Sbjct: 164 CGPGMEHVDRIFGRLATSWALSARHGIPLADVFDAVHRDMETTARSARQLDARLAGPRAG 223 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 A ++ LP L + VL+ G +L V AA ++ G+ M Sbjct: 224 AAVLAFLPVAGLVLGEAMGAAPIPVLMGTSVGSVLFVVGAALLVAGVAWTSSMT 277 >gi|319424901|gb|ADV52975.1| MSHA biogenesis protein, MshG [Shewanella putrefaciens 200] Length = 406 Score = 69.0 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 19/165 (11%), Positives = 52/165 (31%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 D+ + R+G+P+ A+A + + ++ + E G LS ++++ Sbjct: 64 DELQIFTRQMYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSAMNQH 123 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L +A LS + + + +++A Sbjct: 124 PE-----VFDSLFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRIKAAMRYPILVLIA 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 I ++ +V + D + + + + + Sbjct: 179 ITIAMVILNIMVIPKFAEMFSRFGADLPWATKVLIGTSNLFVNYW 223 Score = 40.1 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 10/135 (7%), Positives = 34/135 (25%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + AG+P++ A++++ + + + S + Sbjct: 266 RSTLSRYCRSFSMMLSAGVPMTQALSLVADAVDNAYMH-----DRIVGMRRGIESGDSVL 320 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 Q + + + G + + L + + + K +E + Sbjct: 321 RVSNQSQLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGIV 380 Query: 133 IGSLPFCVSTLVYFT 147 + + Sbjct: 381 AVIVLVLALGIYLPM 395 >gi|262165914|ref|ZP_06033651.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio mimicus VM223] gi|262025630|gb|EEY44298.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio mimicus VM223] Length = 314 Score = 69.0 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 68/157 (43%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + H +K+R P+ALD++V +GL + A+ + + S E V Sbjct: 155 LHHFVKERQRTIRAGVPDALDLLVVCTESGLGFNAALRKVADELTISHPEFADELDTVCA 214 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ + + +V L E+ ++S S++GG+LS+ L + + RD++N + Sbjct: 215 KIKAGVEMHTAFDELVARTGLTEIRGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEV 274 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + A + K ++ + C + P +++ Sbjct: 275 EEIAAKIPTKMIFPLLLFIWPC--FFIVAIGPALLSL 309 >gi|33867074|ref|NP_898632.1| TadB-like protein [Rhodococcus erythropolis] gi|33668908|gb|AAP73902.1| TadB-like protein [Rhodococcus erythropolis] Length = 295 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 60/171 (35%), Gaps = 3/171 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + + + G + A+ + + +E R+I+ + +++ Sbjct: 98 NAMEEWVRNLSGVLAVGTGIEQAIIATHKAMPEALTTEISRLIQRLRTNTPIIDALRGFA 157 Query: 74 RYMPLQEVSFFSTVISVQS-QLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G L+ L LSR + + + V+A ++ +A Sbjct: 158 DDLDDATGDLIVGSLIQSAAIRGSGLTAVLDRLSRSVAEDVRNRRAVEAARKGSRTTARW 217 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + + + F YM P G ++ V A + ++ M+ +I Sbjct: 218 VTIITIGFTVGL-FLFTDYMT-FYKTPAGQLIFLVQIAGFIACLLWMKKLI 266 >gi|289661858|ref|ZP_06483439.1| pilC, fimbrial assembly protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 341 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 22/173 (12%), Positives = 56/173 (32%), Gaps = 6/173 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + +++G+P+ ++ +I + ++ ++ G SL ESIS+ Sbjct: 1 KDIAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMIGQIRTDIEGGSSLYESISKH 60 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L ++ + + +K K++ + Sbjct: 61 PVQ-----FDELYRNLVRAGEGAGVLETVLETVASYKENIEALKGKIKKAMFYPAMVVAV 115 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + V + LL V A+ ++ + L++ Sbjct: 116 AIIVSAILLIFVVPQFEEVFKSFGAELPAFTLLLVNASRFMVSYWWLMLVVAV 168 Score = 37.4 bits (85), Expect = 0.81, Method: Composition-based stats. Identities = 15/137 (10%), Positives = 48/137 (35%), Gaps = 7/137 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISR 71 + +AG+P+ +A+ ++ G + + + E R+ + +G ++ ++ + Sbjct: 204 NSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEEAVFRMRDDVSVGYPVNMAMKQ 263 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + ++ + G L L ++ + N + +E + Sbjct: 264 VNLFPHM------VIQMTAIGEEAGALDAMLFKVAEYFEEEVNNAVDALSSLLEPLIMVF 317 Query: 132 IIGSLPFCVSTLVYFTS 148 I + V + Sbjct: 318 IGTIVGGMVIGMYLPIF 334 >gi|308369182|ref|ZP_07666675.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002] gi|308378427|ref|ZP_07668749.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009] gi|308380757|ref|ZP_07669274.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011] gi|308406205|ref|ZP_07669540.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012] gi|308328418|gb|EFP17269.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002] gi|308352454|gb|EFP41305.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009] gi|308360493|gb|EFP49344.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011] gi|308364119|gb|EFP52970.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012] Length = 251 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 1/172 (0%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 AL+++V +RAG A ++ ++ PV R V LG ++ + Sbjct: 76 QALEAALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAA 135 Query: 74 RYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R L + + S G ++ + R + +R+ A+V A A+ASA I Sbjct: 136 RSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAI 195 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + LP L ++ L+ G LL V G++ + + Sbjct: 196 LAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITD 247 >gi|126176022|ref|YP_001052171.1| type II secretion system protein [Shewanella baltica OS155] gi|125999227|gb|ABN63302.1| type II secretion system protein [Shewanella baltica OS155] Length = 406 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 18/168 (10%), Positives = 53/168 (31%), Gaps = 6/168 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 ++ + R+G+P+ A+A + + ++ + E G LS S+++ Sbjct: 64 EELQIFTRQMYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSSMNQH 123 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L +A LS + + + ++++ Sbjct: 124 PD-----VFDSLFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRIKSAMRYPMFVLIA 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I ++ +V + D + + + + + + Sbjct: 179 IALAMVILNIMVIPKFAEMFSRFGADLPWATKVLIGTSNLFVNYWALM 226 Score = 39.3 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 9/132 (6%), Positives = 36/132 (27%), Gaps = 5/132 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + AG+P++ A++++ + + + + S + Sbjct: 269 LARYCRSFSMMLSAGVPMTQALSLVADAVDNAYMHDKIVGMRR-----GIESGDSMLRVS 323 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + + G + + L + + + K +E ++ Sbjct: 324 NQSKLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGFVAVI 383 Query: 136 LPFCVSTLVYFT 147 + + Sbjct: 384 VLVLALGIYLPM 395 >gi|291526747|emb|CBK92333.1| hypothetical protein ERE_01990 [Eubacterium rectale M104/1] Length = 247 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 24/189 (12%), Positives = 71/189 (37%), Gaps = 6/189 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRVIET 58 ++++ K ++F N L ++ ++ AG V +A + + SE + + Sbjct: 57 VRRQKEKLNEEFMNVLKVLSSNMLAGYSVENAWQEAEKEMELMYGNDSLMLSEIQEMNRQ 116 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + +S L+++ FS + S + GG + + + + + + + + Sbjct: 117 IKMNQTFEAVLSEFAHRSGLEDIVNFSDIFSFAKRSGGRFVDIIESTTYRMWTKYDTNRQ 176 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 ++ + + +P + + +S YM+ L + G + + I + Sbjct: 177 IEVAVSAKRLEQKTMNYIPIFLLAFLKLSSRDYMSALYGNLIGVIFMSTCLLAYAGAIKL 236 Query: 179 MRLMINFDV 187 + + + Sbjct: 237 AKKFLQVGI 245 >gi|254414459|ref|ZP_05028225.1| Bacterial type II secretion system protein F domain [Microcoleus chthonoplastes PCC 7420] gi|196178689|gb|EDX73687.1| Bacterial type II secretion system protein F domain [Microcoleus chthonoplastes PCC 7420] Length = 406 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 18/162 (11%), Positives = 52/162 (32%), Gaps = 6/162 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 V AG+ + + ++ Q ++ ++ + G SLS+++ Sbjct: 71 FSRQFAVMVNAGVAIVRCLGILSEQCANPKLKKSLTAISSEVQQGTSLSDAMREHPAC-- 128 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++GG L E L L+++L D ++ ++++ + Sbjct: 129 ---FDQLYVSMVQAGEVGGVLDEVLNRLAKLLEDMARLQNQIKSAMTYPLVVGGFAVLVF 185 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ + G + + + +L + Sbjct: 186 LGMTIFLIPIFAGIFEEIGGTLPALTAFMLWLSGVLRSWYAL 227 Score = 41.6 bits (96), Expect = 0.045, Method: Composition-based stats. Identities = 16/133 (12%), Positives = 39/133 (29%), Gaps = 5/133 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + R+G+P+ +A+ ++ S + V + + + L Sbjct: 275 FCRVFGTLTRSGVPILNALDIVRDTSGNQVIANAVEATKQEIQQGGLISV-----AMQNE 329 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 Q + + + G L L ++ D K +E I G + Sbjct: 330 QVFPGLAIQMISVGEETGELDSMLMKVADFYEDEVEQTVKALTSILEPVMIIVIGGMVGT 389 Query: 139 CVSTLVYFTSPGY 151 + ++ + Sbjct: 390 ILVSMYLPMFKVF 402 >gi|304316732|ref|YP_003851877.1| type II secretion system F domain [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778234|gb|ADL68793.1| Type II secretion system F domain [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 404 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 58/180 (32%), Gaps = 11/180 (6%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSE 67 + D + AG+P+ ++A + Q + ++ V E G SLSE Sbjct: 59 RKVKVKDIAVFCRQFAVLINAGIPIVTSLATMAEQVENKKLKKALSDVYEDVQKGKSLSE 118 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 S+ R P+ + ++ G L L ++ N+ K+++ Sbjct: 119 SMRRHSDVFPM-----LLFNMIEAGEVSGTLDNVLNEMADHFEKENNLNQKIKSALAYPM 173 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML--LGVAAAFMLIGIMVMRLMINF 185 + V LV P ++++ N L L + I + + Sbjct: 174 ---IVSIVAILLVIFLVTNVLPTFVSMFKNAGAQLPLPTLILLGLSDSISHFWYVYLGDI 230 Score = 39.7 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 13/133 (9%), Positives = 38/133 (28%), Gaps = 5/133 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+P+ +A++ +V + + + S + + Sbjct: 272 FTRTLATLISSGIPLIEALS-VVERVVGNSIVANGLKRAEEDIKRGNSLAEP----LKKM 326 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G+L L + + +E + + F Sbjct: 327 KIFPPMVIQMVNVGEDSGSLDSILKKTADFYDSEVDTAVSQMTTLIEPLIIVVLALVVGF 386 Query: 139 CVSTLVYFTSPGY 151 V ++V Y Sbjct: 387 IVVSIVMPMFQMY 399 >gi|89098959|ref|ZP_01171839.1| hypothetical protein B14911_06316 [Bacillus sp. NRRL B-14911] gi|89086363|gb|EAR65484.1| hypothetical protein B14911_06316 [Bacillus sp. NRRL B-14911] Length = 401 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 61/175 (34%), Gaps = 6/175 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 DF L +RAG+ V DA ++ Q+ ++ V + G SLS++ ++ Sbjct: 62 QDFVIYLRQFATLLRAGVTVVDATGILSQQTESKALKKALAAVEQDLREGNSLSDAAAK- 120 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + GGN+ + L L+ + K K+ + A I Sbjct: 121 ----HKKVFTSMFVNMIKAGEAGGNMDDTLERLAVHYEKQHFTKQKIISALAYPIAVGII 176 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 ++ + V T + + ++ + + +++ V Sbjct: 177 AVAVVIFLLVSVVPTFVEMFQDFGGELPAITQFVLNSSEFMQKYWWLVILMFVSV 231 >gi|302036148|ref|YP_003796470.1| type IV pilus biogenesis protein PilC [Candidatus Nitrospira defluvii] gi|300604212|emb|CBK40544.1| Type IV pilus biogenesis protein PilC [Candidatus Nitrospira defluvii] Length = 405 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 50/152 (32%), Gaps = 6/152 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71 D + AGLP+ + ++ QS + V E V + G + S+++ R Sbjct: 62 DKDLVVFTRQFGTMINAGLPLIQCLDILSTQSENKVLRETVGDVKNSVEAGSTFSDALKR 121 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + ++GG L L L++ + +K ++++ + A Sbjct: 122 HPK-----VFDDLYVNMIHAGEVGGLLDTILTRLAKHIEKAMKLKGQIKSAMVYPTAIVG 176 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 + + + V + G Sbjct: 177 VAVVIISVLMVWVIPVFAQMFTEMSGGKVGLP 208 >gi|299771789|ref|YP_003733815.1| pilin biogenesis protein [Acinetobacter sp. DR1] gi|298701877|gb|ADI92442.1| pilin biogenesis protein [Acinetobacter sp. DR1] Length = 408 Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 17/177 (9%), Positives = 51/177 (28%), Gaps = 15/177 (8%) Query: 1 MKHLIKKRTAKFL---------DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51 ++++ +KR D + ++AG+P+ ++ +P E Sbjct: 47 VRNIREKRKNILEGLFKKKVSTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMRE 106 Query: 52 FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 + G + + ++ + ++ + + G L L ++ Sbjct: 107 VVLGIKGEVEGGSTFASALRKYPQH-----FDKLFCSLVESGEQSGALETMLDRVAIYKE 161 Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 + +K K++ + + + V + D + V Sbjct: 162 KSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVV 218 >gi|296268208|ref|YP_003650840.1| type II secretion system protein [Thermobispora bispora DSM 43833] gi|296090995|gb|ADG86947.1| type II secretion system protein [Thermobispora bispora DSM 43833] Length = 263 Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 62/167 (37%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 I + AG +A+ + P + V+ G ++ ++ Sbjct: 84 ELCHGIHAELVAGRMPGEALVNAIAAVEPPDPAALTPVVAAVRDGGDVAAALLSAAPEEG 143 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + V + +GG L+ + L+ LR+ + + +V A +A+A ++ +LP Sbjct: 144 GEGLVRLAACWRVSTSVGGGLAALVDRLAASLREAEAHRQEVAAQLAGPRATARMLAALP 203 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + + L+ P GH L + A G+ R + + Sbjct: 204 LLGLLMATALGVSPLPFLLGSPAGHACLLIGLALDAAGVWWTRRLAD 250 >gi|325919049|ref|ZP_08181110.1| type II secretory pathway, component PulF [Xanthomonas gardneri ATCC 19865] gi|325550485|gb|EGD21278.1| type II secretory pathway, component PulF [Xanthomonas gardneri ATCC 19865] Length = 425 Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 21/173 (12%), Positives = 56/173 (32%), Gaps = 6/173 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + +++G+P+ A+ +I GQ + +R ++ G SL E++S+ Sbjct: 85 KDISFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRKMVGQIRTDIEGGSSLHEAVSKH 144 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L ++ + + +K K++ + Sbjct: 145 PVQ-----FDELYRNLVKAGEGAGVLETVLDTVATYKENLEALKGKIKKALFYPAMVMAV 199 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + V + + V + ++ + L++ Sbjct: 200 AILVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWLMLIVAV 252 Score = 35.9 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 16/131 (12%), Positives = 46/131 (35%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77 + +AG+P+ +A+ ++ G + + V R+ E +G ++ ++ ++ + Sbjct: 294 FARTTAVTFKAGVPLVEALGIVAGATGNSVYEKAVIRMREDVSVGYPVNMAMKQVNLFPH 353 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++ + G L L ++ N + +E +I + Sbjct: 354 M------VVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG 407 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 408 GMVIGMYLPIF 418 >gi|239908016|ref|YP_002954757.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1] gi|239797882|dbj|BAH76871.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1] Length = 281 Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 61/148 (41%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + +K R P+ALD++V V AG+ + A+ + + + +E R + Sbjct: 118 LDSRVKARQTAIQKSLPDALDLLVVCVEAGMGLDAAIYRVCQEMSLKDPILSAELRLLTL 177 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + E++ + + L++V ++ G ++++ L + +R ++ A Sbjct: 178 ELRAGKARREALKNLSARIGLEDVGSLVAMLIQTDMFGTSIAQTLRVYADSMRTKRFQLA 237 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + A + K +I + + ++ Sbjct: 238 EELAAKLPVKLLMPLIFFIFPTLLIVIL 265 >gi|149188841|ref|ZP_01867131.1| hypothetical Flp pilus assembly protein TadC [Vibrio shilonii AK1] gi|148837261|gb|EDL54208.1| hypothetical Flp pilus assembly protein TadC [Vibrio shilonii AK1] Length = 283 Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 66/152 (43%), Gaps = 4/152 (2%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL--GLSLSE 67 K + P LDI+ V+ G+ + + + + + ++ +T + + Sbjct: 132 RKISRNLPYVLDIMSVCVQTGMTIEASFDYLHKELAAFDSDLSYQIKKTSDAGKIHGIEK 191 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +++ + +P EV F I Q G +++ L++L+ +R + +K + + + AK Sbjct: 192 ALNDLNNRLPAPEVQSFVLTIIQNLQYGTSVANILSDLAEDMRRIQLLKVEEKVGKLSAK 251 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159 S +I + F + L+ +PG M + D Sbjct: 252 MSVPLILLIMFPIVILI--LAPGVMQLDFTDL 281 >gi|91774310|ref|YP_567002.1| type II secretion system protein [Methanococcoides burtonii DSM 6242] gi|91713325|gb|ABE53252.1| type II secretion system protein F domain [Methanococcoides burtonii DSM 6242] Length = 647 Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 58/160 (36%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +R D+FP L+ + AG+ + DA+ ++ ++SE RR+ + G Sbjct: 430 KARRIRSMEDEFPEFLNRLASINEAGILLIDAINMVAQTKIGVLQSEVRRMQKGLSWGQD 489 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 LS + S T++ S+ ++ L ++ ++N++ + Sbjct: 490 LSSVFMEFESRVKTTMNSRIITLLVKASESTSDIIGVLHIAAKDAELQQNLRKERSTEMA 549 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 +I ++ + ++ + + G L Sbjct: 550 VYLFIVYISFAVFLFIIYVLTAYFIPSIPNTTDMAAGMPL 589 Score = 44.0 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 23/175 (13%), Positives = 55/175 (31%), Gaps = 8/175 (4%) Query: 8 RTAKFLDDFPNALDIIVRSVRA-GLPVSDAVAVIVGQSS--DPVRSEFRRVIETQHLG-L 63 R + P+ + + ++ G+ V DA + S EF ++ + Sbjct: 122 RQSYIDQSLPHGVAYMYALTKSGGVTVHDAFRSLSEHSHVYGLAADEFGYIVRDMDYFGM 181 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + +I + F I GG+L+ L + + + K Sbjct: 182 DVLSAIRNCSSTTSSTNLKAFLDGILFVISSGGDLNSYLRSKTDQFHLDATKQQKTFLEM 241 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + A A++ + + ++ G+M +L + + +G + Sbjct: 242 LGVLAEAYVAVFVVGPIFMIIILVVFGFM----GSGSMPILYTLIYLLIPVGTLF 292 >gi|329946364|ref|ZP_08293931.1| bacterial type II secretion system protein F domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328527340|gb|EGF54338.1| bacterial type II secretion system protein F domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 283 Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 66/173 (38%), Gaps = 3/173 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + +P A+D +V VRAG+ + +A+ + + + VR +FR S+ R+ Sbjct: 105 EVWPEAVDTLVSGVRAGMSLPEALTNLGERGPEVVRPQFRAFASDYAATARFDSSLDRLK 164 Query: 74 RYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G +L L +LS++LR+ + +++A A + Sbjct: 165 ARFADPVADRIVEALRLAHEVGGTDLGTLLRSLSQMLREDMRTRGELEARQSWTVNGAKV 224 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + P+ V L+ + ++L + A + +M + Sbjct: 225 AVAAPWLVLALLSTRTQAAAAYATTAGA--VVLLIGAVVSVAAYRLMLRLGRL 275 >gi|258621455|ref|ZP_05716489.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573] gi|258627496|ref|ZP_05722277.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603] gi|262171240|ref|ZP_06038918.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio mimicus MB-451] gi|258580302|gb|EEW05270.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603] gi|258586843|gb|EEW11558.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573] gi|261892316|gb|EEY38302.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio mimicus MB-451] Length = 314 Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 68/157 (43%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + H +K+R P+ALD++V +GL + A+ + + S E V Sbjct: 155 LHHFVKERQRTIRAGVPDALDLLVVCTESGLGFNAALRKVADELAISHPEFADELDTVCA 214 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ + + +V L E+ ++S S++GG+LS+ L + + RD++N + Sbjct: 215 KIKAGVEMHTAFDELVARTGLTEIRGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEV 274 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + A + K ++ + C + P +++ Sbjct: 275 EEIAAKIPTKMIFPLLLFIWPC--FFIVAIGPALLSL 309 >gi|114564899|ref|YP_752413.1| type II secretion system protein [Shewanella frigidimarina NCIMB 400] gi|114336192|gb|ABI73574.1| type II secretion system protein [Shewanella frigidimarina NCIMB 400] Length = 404 Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 18/165 (10%), Positives = 53/165 (32%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 ++ + R+G+P+ A+A + + D ++ + E G LS ++++ Sbjct: 63 EELQIFSRQMYSLTRSGIPILRAIAGLSETTHSDRMKKALDDISEQLTSGRPLSSAMNQH 122 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L +A LS + + + +++A Sbjct: 123 PDI-----FDSLFVSMIHVGENTGKLEDAFIQLSGYIEREQETRRRIKAAMRYPMFVLIA 177 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 I ++ +V + + + + + + + Sbjct: 178 ITIAMVILNIMVIPKFADMFSRFGAELPWATKILIGTSNLFVNFW 222 Score = 38.6 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 12/135 (8%), Positives = 38/135 (28%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + AG+P++ A++++ + + + + S + Sbjct: 265 RSTLSRYCRCFSMMLSAGVPMTQALSLVADAVDNAYMHDKIVGMRR-----GIESGESML 319 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 Q + + + G + + L + + + K +E A++ Sbjct: 320 RVSNSSQLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIAFV 379 Query: 133 IGSLPFCVSTLVYFT 147 G + + Sbjct: 380 AGIVLILALGIYLPM 394 >gi|146296096|ref|YP_001179867.1| type II secretion system protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409672|gb|ABP66676.1| type II secretion system protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 403 Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 58/179 (32%), Gaps = 6/179 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLS 66 R + D + AG+P+ A+ VI Q + + G LS Sbjct: 57 RKKIPIKDLAVFCRQFATMLMAGIPMVSALDVIAEQFKGRYFGKVLEDIHKKVQSGSMLS 116 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ P + ++ G++ +AL ++ ++ K+ + Sbjct: 117 RALAEKAECFPP-----ILINMIEAGEMSGSVDQALDRMATHFEKELKLRQKIINALIYP 171 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + + T V T G + L + + ++ + V+ +++ Sbjct: 172 AIVILVAIGVLIIMLTFVVPTFVGIFSELNVELPATTRFIITSSNFMRNNFVLIVLVCI 230 >gi|15789974|ref|NP_279798.1| hypothetical protein VNG0822C [Halobacterium sp. NRC-1] gi|10580392|gb|AAG19278.1| conserved hypothetical protein [Halobacterium sp. NRC-1] Length = 535 Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 17/144 (11%), Positives = 44/144 (30%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++R + P+ LD + AG+ ++ V + E R G Sbjct: 303 ARRRRKAIEAEVPDFLDRFASTNEAGMAAVESFGRTVDGDLGALTQELERTWADIQWGAR 362 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + +++R + VS + + GNL L + + ++ + + Sbjct: 363 IEHALTRFRDRVNTPAVSRVVALTTNAMAASGNLGPVLRIAANEATASRRLERDRRNELL 422 Query: 125 EAKASAWIIGSLPFCVSTLVYFTS 148 ++ + + + Sbjct: 423 TYVVVIYVSFFVFIAIIVALDTIF 446 >gi|56461124|ref|YP_156405.1| Type II secretory pathway, component PulF [Idiomarina loihiensis L2TR] gi|56180134|gb|AAV82856.1| Type II secretory pathway, component PulF [Idiomarina loihiensis L2TR] Length = 408 Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 22/178 (12%), Positives = 57/178 (32%), Gaps = 8/178 (4%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSE 67 D + V + LP+ A+ + Q+ ++ V G L+E Sbjct: 63 RKVKAQDLALITRQLSTLVGSALPIEQALLAVADQTEKPRLKKLLMSVRSKVVEGYGLAE 122 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++S T + + G+L L L+ R++MK+++ + Sbjct: 123 AMSEFP-----GVFDSLYTAMVAAGEKSGHLDTVLDELANYTEQRQHMKSQLTQALIYPL 177 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVMRLMI 183 + + + + + + D P ++ ++ G+ ++ + Sbjct: 178 MLTLVAIGIVVFLLVSIVPQIVDNFSTMGQDLPPTTLAMIAISEFLQNWGLWLLIGIA 235 >gi|297170478|gb|ADI21508.1| type II secretory pathway, component PulF [uncultured verrucomicrobium HF0070_15G23] Length = 414 Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 57/170 (33%), Gaps = 12/170 (7%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAV-AVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D N + ++AG+P++ A+ ++ +S ++ G +LS ++ Sbjct: 74 QDLANYTRQLANLLKAGMPLTSALHSMTSMESGGVHPLVSVSLLGDVKEGKNLSRAMKSH 133 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P + + GG+L E L L+ ++ KV + + ++ Sbjct: 134 AEVFP-----AMYINMVRAGESGGSLVEVLERLADHYERFAEVRQKVISALVYPA---FV 185 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGIMVM 179 IG + + + P +M + L L + + Sbjct: 186 IGLGFILIFVFMSYILPKFMKIFEGMNVELPLSTQLLQGLSNFFADFWWV 235 Score = 35.1 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 44/133 (33%), Gaps = 5/133 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 F + +R G+PV +A+ + + V +++ + Sbjct: 279 FGQFARTLGALLRNGVPVLEALKITQDVVQNVVIQ-----QAIGRTIGGVTDGKTIAQPL 333 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + G++ AL NL+ ++ N+ +V +E +I G Sbjct: 334 GKEGVFDKLMIDLIHIGEQTGDVPSALENLAETYDNQLNVNLRVVTTLIEPFLIVFIAGV 393 Query: 136 LPFCVSTLVYFTS 148 + F + ++ Sbjct: 394 VGFMLVGVLQAMF 406 >gi|295837159|ref|ZP_06824092.1| integral membrane protein [Streptomyces sp. SPB74] gi|197699511|gb|EDY46444.1| integral membrane protein [Streptomyces sp. SPB74] Length = 291 Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 19/184 (10%), Positives = 68/184 (36%), Gaps = 2/184 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++ + ++ + + ++ + + A+ ++ +R +++ Sbjct: 66 REERTQMRRVEALATWTESLRDTIAGAVGLEQAIPASARAAAPALRPHLEALVDRLRART 125 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQAL 122 L +++ + + + + ++ G L + L L++ R+ +M+ +V A Sbjct: 126 PLPDALQLLADEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQ 185 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + S I+ ++ + + +++ N P G ++L +G +R + Sbjct: 186 RASTRRSVQIVVAVSVLFVLGLAVFNKDFVSP-YNSPVGQVVLAGVCGLFALGFWWLRKL 244 Query: 183 INFD 186 + Sbjct: 245 STIE 248 >gi|157373688|ref|YP_001472288.1| type II secretion system protein [Shewanella sediminis HAW-EB3] gi|157316062|gb|ABV35160.1| type II secretion system protein [Shewanella sediminis HAW-EB3] Length = 406 Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 19/165 (11%), Positives = 49/165 (29%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 D+ + R+G+P+ A+A + + +R + E G LS + Sbjct: 64 DELQIFSRQMYSLTRSGIPILRAIAGLSETTHSQRMRDALNDISEQLTSGRPLSSA---- 119 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L +A L+ + + + +++A Sbjct: 120 -MNHHPDVFDALFVSMVHVGENTGKLEDAFIQLAGYIEREQETRRRIKAAMRYPIFVLIA 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 I ++ +V + D + + + + + Sbjct: 179 IALAMVILNIMVIPKFAEMFSRFGADLPWATKVLIGTSNLFVNYW 223 Score = 40.5 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 11/132 (8%), Positives = 36/132 (27%), Gaps = 5/132 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + AG+P++ A++++ + + + S + Sbjct: 269 LSRYCRSFSMMLSAGVPMTQALSLVADAVDNAYMH-----DRIVGMRRGIESGDSMLRVS 323 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 Q + + + G + + L + + + K +E ++ G Sbjct: 324 NQSQLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGFVAGI 383 Query: 136 LPFCVSTLVYFT 147 + + Sbjct: 384 VLILALGIYLPM 395 >gi|217971718|ref|YP_002356469.1| type II secretion system protein [Shewanella baltica OS223] gi|217496853|gb|ACK45046.1| type II secretion system protein [Shewanella baltica OS223] Length = 406 Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 18/168 (10%), Positives = 53/168 (31%), Gaps = 6/168 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 ++ + R+G+P+ A+A + + ++ + E G LS S+++ Sbjct: 64 EELQIFTRQMYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSSMNQH 123 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L +A LS + + + ++++ Sbjct: 124 PD-----VFDSLFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRIKSAMRYPMFVLIS 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I ++ +V + D + + + + + + Sbjct: 179 IALAMVILNIMVIPKFAEMFSRFGADLPWATKVLIGTSNLFVNYWALM 226 Score = 39.3 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 9/135 (6%), Positives = 36/135 (26%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + AG+P++ A++++ + + + + S + Sbjct: 266 RSTLARYCRSFSMMLSAGVPMTQALSLVADAVDNAYMHDKIVGMRR-----GIESGDSML 320 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G + + L + + + K +E ++ Sbjct: 321 RVSNQSKLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGFV 380 Query: 133 IGSLPFCVSTLVYFT 147 + + Sbjct: 381 AVIVLVLALGIYLPM 395 >gi|167842403|ref|ZP_02469087.1| bacterial type II secretion system protein F domain [Burkholderia thailandensis MSMB43] Length = 244 Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 61/146 (41%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + + +R P+ALD++V AG +S A+ + + P+ EF Sbjct: 84 LGFAVARRQKTIAAYLPDALDLLVICTNAGNSLSVAIRRVASELKTICPPLADEFSVCAN 143 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + +++ M + L + T + Q G ++++L LSR R + + Sbjct: 144 ELQIGGEPAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 203 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K + ++ + V+ + Sbjct: 204 EEKAAKLAPKMTLPMMLFVMPTVALI 229 >gi|299069494|emb|CBJ40763.1| Type II secretion system protein [Ralstonia solanacearum CMR15] Length = 324 Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 64/157 (40%), Gaps = 9/157 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + R + D+ P +D++ GL + ++ VI + + EF R + Sbjct: 161 LARRKASRRHRLDDELPVMVDMLRLLQGVGLSIDQSLQVIANEFHGMLPVLADEFGRANQ 220 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G +++ R+ R +++ T+++ + GG + E L L++ + + Sbjct: 221 QFASGRPREQTLLRISRLFDNEDLKGLITLLTQVDRFGGAVQEPLRQFGLRLQENRRSRL 280 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 K + + + ++ ++ L+ PG+M+V Sbjct: 281 KERVGKL------TVKMTVVMVLTLLIITAGPGFMSV 311 >gi|302553401|ref|ZP_07305743.1| integral membrane protein [Streptomyces viridochromogenes DSM 40736] gi|302471019|gb|EFL34112.1| integral membrane protein [Streptomyces viridochromogenes DSM 40736] Length = 315 Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 19/174 (10%), Positives = 62/174 (35%), Gaps = 2/174 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + + + ++ + + A+ ++ +R +++ L E++ + Sbjct: 107 EALASWTESLRDTIAGAVGLEQAIPASARAAAPVLRPHLDALVDRLRARTPLPEALQHLA 166 Query: 74 RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + ++ G L + L L++ R+ +M+ +V A + S I Sbjct: 167 DEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQRASTRRSVQI 226 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + ++ + + ++ P G +L +G +R + + Sbjct: 227 VVAVSIAFVLGLSIFNRDFVEP-YGTPAGQAVLACVCGLFALGFWWLRKLSTIE 279 >gi|169797413|ref|YP_001715206.1| type 4 fimbrial assembly protein [Acinetobacter baumannii AYE] gi|184156664|ref|YP_001845003.1| Type II secretory pathway, component PulF [Acinetobacter baumannii ACICU] gi|213155773|ref|YP_002317818.1| pilin biogenesis protein [Acinetobacter baumannii AB0057] gi|260556305|ref|ZP_05828524.1| general secretion pathway protein F [Acinetobacter baumannii ATCC 19606] gi|301345146|ref|ZP_07225887.1| pilin biogenesis protein [Acinetobacter baumannii AB056] gi|301510693|ref|ZP_07235930.1| pilin biogenesis protein [Acinetobacter baumannii AB058] gi|301594953|ref|ZP_07239961.1| pilin biogenesis protein [Acinetobacter baumannii AB059] gi|332873072|ref|ZP_08441029.1| type IV fimbrial assembly protein PilC [Acinetobacter baumannii 6014059] gi|169150340|emb|CAM88237.1| type 4 fimbrial assembly protein [Acinetobacter baumannii AYE] gi|183208258|gb|ACC55656.1| Type II secretory pathway, component PulF [Acinetobacter baumannii ACICU] gi|193076177|gb|ABO10792.2| type 4 fimbrial assembly protein [Acinetobacter baumannii ATCC 17978] gi|213054933|gb|ACJ39835.1| pilin biogenesis protein [Acinetobacter baumannii AB0057] gi|260410360|gb|EEX03659.1| general secretion pathway protein F [Acinetobacter baumannii ATCC 19606] gi|322506551|gb|ADX02005.1| PulF [Acinetobacter baumannii 1656-2] gi|323516430|gb|ADX90811.1| Type II secretory pathway, component PulF [Acinetobacter baumannii TCDC-AB0715] gi|332738584|gb|EGJ69454.1| type IV fimbrial assembly protein PilC [Acinetobacter baumannii 6014059] Length = 408 Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 17/177 (9%), Positives = 50/177 (28%), Gaps = 15/177 (8%) Query: 1 MKHLIKKRTAKFL---------DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51 ++++ +KR D + ++AG+P+ ++ +P E Sbjct: 47 VRNIREKRKNILEGLFKKKVTTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMRE 106 Query: 52 FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 + G + + ++ + ++ + + G L L ++ Sbjct: 107 VVLGIKGEVEGGSTFASALRKYPQH-----FDNLFCSLVESGEQSGALETMLDRVAIYKE 161 Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 + +K K++ + + + V D + V Sbjct: 162 KSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVV 218 Score = 37.8 bits (86), Expect = 0.69, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 40/129 (31%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG+P+ DA+ G +++ + ++ E G L ++ R Sbjct: 280 RTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVATGQQLQFAMRVSNR----- 334 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + + G L L ++ + + ME A + + Sbjct: 335 -FPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGL 393 Query: 140 VSTLVYFTS 148 V + Sbjct: 394 VIAMYLPIF 402 >gi|110833474|ref|YP_692333.1| type IV pilus assembly protein TapC [Alcanivorax borkumensis SK2] gi|110646585|emb|CAL16061.1| type IV pilus assembly protein TapC [Alcanivorax borkumensis SK2] Length = 410 Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 22/196 (11%), Positives = 59/196 (30%), Gaps = 15/196 (7%) Query: 2 KHLIKKR------TAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFR 53 K + KKR K D + ++AG+P+ A ++ +P Sbjct: 51 KKVAKKREINLGGKKKVTPMDIAIFTRQMATMMKAGVPLVQAFEIVADGLDNPAMKVVVM 110 Query: 54 RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 ++ G + + ++ + + G L L ++ + Sbjct: 111 KLKTEVEGGNNFAGALRMHPLL-----FDDLYCSLVDAGEQSGALETMLDRVALYKEKSE 165 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAF 171 +K K++ A + + + V T + ++ ++ Sbjct: 166 ALKQKIKKALKYPIAVICVAVIVTAILLIKVVPTFKELFEGFGAELPAFTQFVINLSEGL 225 Query: 172 MLIGIMVMRLMINFDV 187 ++++ +I F + Sbjct: 226 QSNFLIIILSLIGFSI 241 Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 41/138 (29%), Gaps = 7/138 (5%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESIS 70 F + + AG+P+ DA+ G + + + R ++ E G L ++ Sbjct: 272 FKATIARYARTLSTTFAAGVPLIDALDACAGATGNVIYRKAVLQIKEDVSTGQQLQFAMR 331 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + ++ + G L L ++ D + ME + Sbjct: 332 STG------VFPSMALQMTAIGEESGALDAMLEKVAIYYEDEVDNAVDGLTSMMEPLIMS 385 Query: 131 WIIGSLPFCVSTLVYFTS 148 + + + + Sbjct: 386 VLGVLIGGLIIAMYLPIF 403 >gi|90414687|ref|ZP_01222658.1| putative general secretion pathway protein F [Photobacterium profundum 3TCK] gi|90324229|gb|EAS40804.1| putative general secretion pathway protein F [Photobacterium profundum 3TCK] Length = 410 Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 60/172 (34%), Gaps = 11/172 (6%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66 R ++ + V+AG+P+ + + + Q+ +R+ V G +LS Sbjct: 64 RRGISTNELSLVTRQLATLVQAGMPLEECLKAVGEQNEKPRLRNMLLAVRSRVVEGYTLS 123 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S++ + + G+L L L+ +R+ M++K+Q + Sbjct: 124 DSMAEYP-----HIFDQLFRAMVAAGEKSGHLDTVLNRLADYTENRQKMRSKLQQAMIYP 178 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + V+ L+ P ++ + G L + + V Sbjct: 179 T---MLTLVAVAVVAFLLATVVPKIVDQFVQ--MGQKLPTITEVLLAASNFV 225 >gi|167628382|ref|YP_001678881.1| type ii secretion system protein, putative [Heliobacterium modesticaldum Ice1] gi|167591122|gb|ABZ82870.1| type ii secretion system protein, putative [Heliobacterium modesticaldum Ice1] Length = 415 Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 60/179 (33%), Gaps = 6/179 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLS 66 R + D + V AG+ + A+++++ QS + +R + G +LS Sbjct: 68 RRSVPAKDLAVFCRQLSTLVNAGVAIHSALSILIQQSRNAALRQALIDLSGDLQRGFTLS 127 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ R + P + +LGG L E L L+ + KV+A Sbjct: 128 QAVGRHPKVFP-----EVFVHMIEAGELGGVLEEVLQRLAGHFEKDNETRNKVKAALTYP 182 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 I + + V G + L + + A ++ + F Sbjct: 183 AVVLLIGMAAVAFLLGFVIPRFAGVLGELGAELPALTKQMLELAELVKAYWWTSFIAAF 241 Score = 36.3 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 37/130 (28%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + +R+G+P+ A+ V+ + + S+ S+ + Sbjct: 282 FSRTLGTLIRSGVPMLQALEVVEKTAGNMAVSKGVMGTRE-----SIRKGQGLAEPLQKT 336 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L L +S + + +E ++ G + Sbjct: 337 GIFPPMVVQMVAVGEETGALDTMLEKVSDYYEMEVDGVVTRLSTIIEPMMLVFLGGLVAL 396 Query: 139 CVSTLVYFTS 148 V ++ Sbjct: 397 MVLAMLLPIF 406 >gi|262280753|ref|ZP_06058536.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202] gi|262257653|gb|EEY76388.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202] Length = 408 Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 17/177 (9%), Positives = 51/177 (28%), Gaps = 15/177 (8%) Query: 1 MKHLIKKRTAKFL---------DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51 ++++ +KR D + ++AG+P+ ++ +P E Sbjct: 47 VRNIREKRKNILEGLFKKKVSTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMRE 106 Query: 52 FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 + G + + ++ + ++ + + G L L ++ Sbjct: 107 VVLGIKGEVEGGSTFASALRKYPQH-----FDKLFCSLVESGEQSGALETMLDRVAIYKE 161 Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 + +K K++ + + + V + D + V Sbjct: 162 KSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVV 218 Score = 37.8 bits (86), Expect = 0.77, Method: Composition-based stats. Identities = 16/128 (12%), Positives = 38/128 (29%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + + AG+P+ DA+ G +++ + + I + R+ P Sbjct: 280 RTLATTFAAGVPLIDALESTAGATNNIIYEQAVMKIREDVATGQQLQFAMRVSNRFP--- 336 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + + G L L ++ + + ME A + + V Sbjct: 337 --SMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLV 394 Query: 141 STLVYFTS 148 + Sbjct: 395 IAMYLPIF 402 >gi|149175458|ref|ZP_01854079.1| hypothetical protein PM8797T_18379 [Planctomyces maris DSM 8797] gi|148845726|gb|EDL60068.1| hypothetical protein PM8797T_18379 [Planctomyces maris DSM 8797] Length = 370 Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 64/158 (40%), Gaps = 3/158 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR--RVIET 58 + R ++ P+ LD++ V G+ V A+ I+ + + + +++ Sbjct: 192 VTSKASDRRSEIEQGIPDMLDMLNMCVSQGMTVPHALKKIISELAKVYPALAHELKIVIE 251 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 Q + S+++S + + + EV F+ ++ Q+G N++ AL S +R+ + +A Sbjct: 252 QSSIGTFSQALSNFSKRIDVPEVHSFAALLIQTDQMGTNVTSALQEYSDNMRESLSQRAD 311 Query: 119 VQALSM-EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 +A ++ +P L+ + Sbjct: 312 EKANKATFKLLFPTVLCLMPAIYIFLLGPAIVELSDFF 349 >gi|313107171|ref|ZP_07793371.1| type 4 fimbrial biogenesis protein PilC [Pseudomonas aeruginosa 39016] gi|310879873|gb|EFQ38467.1| type 4 fimbrial biogenesis protein PilC [Pseudomonas aeruginosa 39016] Length = 406 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 20/170 (11%), Positives = 54/170 (31%), Gaps = 6/170 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + + AG+P+ + +I +R + + G SL+ S+ + Sbjct: 67 DIALFTRQMSTMMAAGVPLLQSFDIISEGFDNPNMRKLVEEIKQEVAGGNSLANSLRKKP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G L L ++ + +KAK++ A + Sbjct: 127 Q-----YFDSLYCNLVDAGEQSGALETLLDRVATYKEKTEALKAKIKKAMTYPIAVIVVA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + V + ++ + + +L ++ L++ Sbjct: 182 IIVSAILLIKVVPQFQSVFEGFGAELPAFTMMVINISNVLQEWWLLVLLM 231 Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 43/129 (33%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG+P+ +A+ + G + + V ++ + G+ L+ S+ Sbjct: 277 RTLSTTFAAGVPLVEALDSVSGATGNVVFRDAVGKIKQDVSTGMQLNFSMRT------TN 330 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + ++ + G L + LA ++ + ME A + + Sbjct: 331 IFPSMAIQMTAIGEESGALDDMLAKVAGFYEQEVDNAVDNLTALMEPMIMAVLGVLVGGL 390 Query: 140 VSTLVYFTS 148 + + Sbjct: 391 IIAMYLPIF 399 >gi|229543673|ref|ZP_04432733.1| type II secretion system protein [Bacillus coagulans 36D1] gi|229328093|gb|EEN93768.1| type II secretion system protein [Bacillus coagulans 36D1] Length = 401 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 62/175 (35%), Gaps = 6/175 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 DF L ++AG+ V D+ ++ Q+S ++ V E G+ LS++ ++ Sbjct: 62 QDFVIFLRQFSTLLKAGVTVVDSTNILASQTSSKTLKKTLLAVEEDLRGGIPLSQAAAK- 120 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + GGNL L L+ + + KV++ + Sbjct: 121 ----HKKVFTPMFINMVYAGEAGGNLDGTLERLATYYEKQHRTRQKVRSALTYPAFVGVM 176 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + + + T + L ++A+ + + ++I V Sbjct: 177 AIVVVIFMLVKIVPTFVSMLKNYKASLPAVTRLVLSASGFMQHYWWLVVLILIGV 231 >gi|328952510|ref|YP_004369844.1| Type II secretion system F domain protein [Desulfobacca acetoxidans DSM 11109] gi|328452834|gb|AEB08663.1| Type II secretion system F domain protein [Desulfobacca acetoxidans DSM 11109] Length = 312 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 65/158 (41%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 ++ +R K + P+ LD++ + AGL + A+ + + + E + Sbjct: 150 LRRQASERRLKIWQELPDVLDLLNICIEAGLSLDSALYRVSRELRDIAPVLSRELAQYFL 209 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL E + ++V + +S V+ S+LG +++E+L S LR + A Sbjct: 210 EIQSGLPRKEVLEKIVDRNQVNALSGVVNVLMQSSRLGTDIAESLKVYSVSLRTERMQAA 269 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + Q + K + + + + +V P + +L Sbjct: 270 EEQGAKVSTKLTFPMTMLILPALLLVV--LGPAMIKML 305 >gi|153812903|ref|ZP_01965571.1| hypothetical protein RUMOBE_03310 [Ruminococcus obeum ATCC 29174] gi|149830981|gb|EDM86071.1| hypothetical protein RUMOBE_03310 [Ruminococcus obeum ATCC 29174] Length = 275 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 76/191 (39%), Gaps = 8/191 (4%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS------EFRRVI 56 L +R L F + L+ + S G A G +D E ++ Sbjct: 87 FLKARRQKGLLIQFRDMLESLTASYSTGKNTQGAFEDAYGDLADIYGKKADIVHEIEMIV 146 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 + G ++ + L +V F+T+ V S+ GGNL +A+ + RI+ ++ M+ Sbjct: 147 NGIYNGQNIEALLKNFAERSHLDDVESFATIFEVSSRYGGNLKKAVGDTYRIINEKIEME 206 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 +++ L K I+ +P + + G M+++ N P + +A A Sbjct: 207 MEIRTLLTANKNELNIMMLMPLIIMVTLSGM--GSMSIVQNTPLNVLTKVIALALFGTAY 264 Query: 177 MVMRLMINFDV 187 + R +I+ + Sbjct: 265 YIGRKIIDIKI 275 >gi|152999038|ref|YP_001364719.1| type II secretion system protein [Shewanella baltica OS185] gi|160873631|ref|YP_001552947.1| type II secretion system protein [Shewanella baltica OS195] gi|304411543|ref|ZP_07393156.1| Type II secretion system F domain protein [Shewanella baltica OS183] gi|307306681|ref|ZP_07586423.1| Type II secretion system F domain protein [Shewanella baltica BA175] gi|151363656|gb|ABS06656.1| type II secretion system protein [Shewanella baltica OS185] gi|160859153|gb|ABX47687.1| type II secretion system protein [Shewanella baltica OS195] gi|304350070|gb|EFM14475.1| Type II secretion system F domain protein [Shewanella baltica OS183] gi|306910649|gb|EFN41078.1| Type II secretion system F domain protein [Shewanella baltica BA175] gi|315265860|gb|ADT92713.1| Type II secretion system F domain [Shewanella baltica OS678] Length = 406 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 18/168 (10%), Positives = 53/168 (31%), Gaps = 6/168 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 ++ + R+G+P+ A+A + + ++ + E G LS S+++ Sbjct: 64 EELQIFTRQMYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSSMNQH 123 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L +A LS + + + ++++ Sbjct: 124 PD-----VFDSLFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRIKSAMRYPMFVLIS 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I ++ +V + D + + + + + + Sbjct: 179 IALAMVILNIMVIPKFAEMFSRFGADLPWATKVLIGTSNLFVNYWALM 226 Score = 39.3 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 9/132 (6%), Positives = 36/132 (27%), Gaps = 5/132 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + AG+P++ A++++ + + + + S + Sbjct: 269 LARYCRSFSMMLSAGVPMTQALSLVADAVDNAYMHDKIVGMRR-----GIESGDSMLRVS 323 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + + G + + L + + + K +E ++ Sbjct: 324 NQSKLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGFVAVI 383 Query: 136 LPFCVSTLVYFT 147 + + Sbjct: 384 VLVLALGIYLPM 395 >gi|288553597|ref|YP_003425532.1| competence or secretion-like protein [Bacillus pseudofirmus OF4] gi|288544757|gb|ADC48640.1| competence or secretion-like protein [Bacillus pseudofirmus OF4] Length = 402 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 59/168 (35%), Gaps = 6/168 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISR 71 DF L ++AG+ V DA ++ Q+ S +++ V + G S++ Sbjct: 62 SQDFVIYLRQFATLLKAGISVVDATVILREQTSSKKLKAALHDVEDELRAGNPFSQAAEN 121 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P ++ +LGGNL + L L+ + K KV + + Sbjct: 122 QKKVFPP-----LFVNMAKAGELGGNLDDILERLASYYEKQHKTKQKVMSAMSYPIVVGF 176 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + + + V T + +L + A + + + Sbjct: 177 VAIIIVIFLLSYVVPTFADMFASFNAELPMITVLVLQAGEVFSRLWWL 224 >gi|298675313|ref|YP_003727063.1| type II secretion system F domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298288301|gb|ADI74267.1| Type II secretion system F domain protein [Methanohalobium evestigatum Z-7303] Length = 652 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 21/163 (12%), Positives = 60/163 (36%), Gaps = 1/163 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L KR ++ + P + AG+ + DA+++ + +E ++ E + G Sbjct: 433 LRAKRISQIEEQIPEFFKKLASINEAGIMLMDAISMTAQSKVGIIHTEIGKMKEDINWGT 492 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 +L++++ + + T I S+ +++ L + +K MK + Sbjct: 493 NLTQALKKFEYRVRTDLTRRIVTTIIKASESTNDVTSVLNIAANDAEVQKQMKNQRSTEM 552 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYM-NVLINDPRGHMLL 165 ++ + + ++ M + + + G ++ Sbjct: 553 YVYVFIIYMAFFVYLFIVYILTVHFLSSMPSTMGDSVAGMTMV 595 >gi|296157580|ref|ZP_06840415.1| general secretion pathway protein F [Burkholderia sp. Ch1-1] gi|295892352|gb|EFG72135.1| general secretion pathway protein F [Burkholderia sp. Ch1-1] Length = 405 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 59/183 (32%), Gaps = 12/183 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + + +R + + AGLP+ +A++V+ QS D +R + Sbjct: 59 LGRRLSQREQAI------LTRQLASLLIAGLPLDEALSVLTEQSERDYIRELMASIRAEV 112 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SL+ ++++ + + + + G L L+ L+ + R +K K+ Sbjct: 113 LGGHSLANALTQHPK-----DFPEIYRALVAAGEHTGKLGLVLSRLADYIEQRNALKQKI 167 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 I + + + V + +A + + Sbjct: 168 VLAFTYPAIVTLIAFGIVTFLLSYVVPQVVNVFASTKQQLPFLTITMMALSGFVRNWWWA 227 Query: 180 RLM 182 L+ Sbjct: 228 MLI 230 Score = 38.6 bits (88), Expect = 0.40, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ S+ E I G SLS ++ + P Sbjct: 274 FASTLGILTAAGVPILRALQAAAETLSNNAMRENIDDAIVRVREGTSLSRALGNTKTFPP 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+++ L + + +E + G + Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAADGEARELERRTMFLTSLLEPLLILAMGGVVL 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 VIVLAVMLPI 397 >gi|254506088|ref|ZP_05118232.1| bipartite nuclear localization signal containing protein [Vibrio parahaemolyticus 16] gi|219550906|gb|EED27887.1| bipartite nuclear localization signal containing protein [Vibrio parahaemolyticus 16] Length = 248 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 64/157 (40%), Gaps = 4/157 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 + K R ++ P LD++ V+ G+ + A+ + + + + + Sbjct: 91 LDGRGKARVSRVSGQLPYLLDLLAVCVQTGMTIESAMNYLSKEMVGFDKELAGLLKKTND 150 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + + +++ + +P E+ F + Q G ++ L L+ +RD + + + Sbjct: 151 RARLVGMQKALDELYEDIPSSEMRSFVMTLKQSLQYGSSIYGVLTTLAGDIRDVQMLTLE 210 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + AK S +I + + L+ PG + ++ Sbjct: 211 EKIGKLAAKMSVPLILFIMMPIVILIAA--PGILRMM 245 >gi|149917608|ref|ZP_01906105.1| general secretion pathway protein F [Plesiocystis pacifica SIR-1] gi|149821671|gb|EDM81069.1| general secretion pathway protein F [Plesiocystis pacifica SIR-1] Length = 422 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 18/167 (10%), Positives = 57/167 (34%), Gaps = 6/167 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D ++ + AG+ + +A+ + Q ++ + + G SL+++++ Sbjct: 82 KDVSGVTRLMSTLLCAGVTLPEALVALTDQVESPRFKNVLSDIGSKVNEGSSLADAMASH 141 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G+L L ++ + ++ +++KV A A + Sbjct: 142 PK-----VFTKLYINMVRAGEASGSLETVLIRIADFMDQQEELRSKVTTAMFYPVAMALV 196 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + V + + + + L+G + Sbjct: 197 GVGVVTLLMVKVVPSISEIFAGQGAELPFTTRTLIGFSDFLVGYWWL 243 Score = 37.4 bits (85), Expect = 0.91, Method: Composition-based stats. Identities = 15/134 (11%), Positives = 43/134 (32%), Gaps = 7/134 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 + + +G+ + A+ ++ + + + G ++ S+ R Sbjct: 286 AIARFARTLSTMLASGVQLLQALDIVRSLLGNVILEKVLSEARDEIREGAGIAPSLKRSG 345 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 ++ P T + + G L + L +L+ + +E + Sbjct: 346 QFPP------LVTHMIAVGERSGQLEQMLTDLADAYDREASSAITRATSVLEPLMIVLMG 399 Query: 134 GSLPFCVSTLVYFT 147 G++ F V ++ Sbjct: 400 GTVGFIVFAIMTPI 413 >gi|300692336|ref|YP_003753331.1| Tad secretion system, secretion accessory protein [Ralstonia solanacearum PSI07] gi|299079396|emb|CBJ52067.1| Tad secretion system, secretion accessory protein [Ralstonia solanacearum PSI07] Length = 313 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 66/148 (44%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + IK R + FP++LD+I+ V AGL + A+ +V + + E+ + Sbjct: 149 LAWKIKYRQRDVFESFPDSLDLIMVCVEAGLGLDAAILRVVDEMRAARPVMAQEYELLTL 208 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GLS +++ + +VS ++ + G +++ +L S +LR ++ M A Sbjct: 209 ELRAGLSREKALRHFAARTGVDDVSLLVAMLIQADRFGTSIAASLRVHSDMLRTKRQMLA 268 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A + K +I + + ++ Sbjct: 269 EERAAKIGTKILFPLIFCIFPSIYVVLL 296 >gi|310820454|ref|YP_003952812.1| general secretion pathway protein F [Stigmatella aurantiaca DW4/3-1] gi|309393526|gb|ADO70985.1| General secretion pathway protein F [Stigmatella aurantiaca DW4/3-1] Length = 418 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 18/179 (10%), Positives = 58/179 (32%), Gaps = 8/179 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 ++ + + R +D + + AG+ + +++ +V Q + + + + Sbjct: 68 LRKMARGRVT--TEDIAITTRQLATLLAAGVTLVESLTALVDQVEKERFKRILSDIKQRV 125 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + G SL++++ + + + + G L L L+ + ++ K+ Sbjct: 126 NEGSSLADALGQHQKVFG-----SLYINMVRAGEASGALDTVLQRLADFTEGQAKLRQKI 180 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + G + + T+V + + + + L Sbjct: 181 VGTMLYPAIMLVVGGGILVLLMTVVVPKVTKIFETMNATLPFTTRVLIGVSNFLQNWWF 239 >gi|117618056|ref|YP_858309.1| type 4 fimbrial assembly protein PilC [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559463|gb|ABK36411.1| type 4 fimbrial assembly protein PilC [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 413 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 16/158 (10%), Positives = 44/158 (27%), Gaps = 6/158 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQ 79 I + AG+P+ ++ +I E ++ G +SE++ R R+ Sbjct: 80 RQITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDL 139 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + G L ++ + +K+K++ + + Sbjct: 140 YCD-----LVEAGEQSGALETIYDRIATYREKSEALKSKIKKAMFYPTMVILVAIVVTSI 194 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + V + + + + Sbjct: 195 LLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQNWW 232 >gi|113869483|ref|YP_727972.1| general secretion pathway protein F [Ralstonia eutropha H16] gi|113528259|emb|CAJ94604.1| general secretion pathway protein F [Ralstonia eutropha H16] Length = 405 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 59/173 (34%), Gaps = 11/173 (6%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 L ++ + + + AGLP+ +A+ + Q+ V + Sbjct: 56 SQLFARKLSTQEQAL--FTRQLASLIVAGLPLDEALGALADQAERAYVHELLAGIRAEVM 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SLS ++++ R + + + G+L L L+ + R + +K++ Sbjct: 114 GGSSLSVALAQHPR-----DFPDIYRALVSAGEHSGHLGLVLERLAGYIESRNTLTSKIR 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + V L+ + P ++V N + +L + + Sbjct: 169 LAFTYPA---IVTVVAFAIVIFLLSYVVPQVVSVFANTKQKLPMLTIIMLALS 218 >gi|326404408|ref|YP_004284490.1| putative type II secretion system protein [Acidiphilium multivorum AIU301] gi|325051270|dbj|BAJ81608.1| putative type II secretion system protein [Acidiphilium multivorum AIU301] Length = 307 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 65/147 (44%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ K+ K +ALD++V AGL + A+ + G+ + V EF + Sbjct: 149 IQQRRKRFIQKVEGGLADALDLMVICADAGLSLESALVRVAGELQLTHPAVAQEFTLTAQ 208 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G ++ +S++ + L + ++ + Q G L++AL LS LR + + Sbjct: 209 EMRIGGNIRDSLNALGVRTGLDSLKRLASTLIQTLQYGTPLTQALRTLSSELRQEQLTRF 268 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + +A + + +I + CV +V Sbjct: 269 EERAARLPVLLTLPMIIFILPCVFLVV 295 >gi|313902411|ref|ZP_07835814.1| hypothetical protein ThesuDRAFT_1381 [Thermaerobacter subterraneus DSM 13965] gi|313467342|gb|EFR62853.1| hypothetical protein ThesuDRAFT_1381 [Thermaerobacter subterraneus DSM 13965] Length = 260 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 73/174 (41%), Gaps = 1/174 (0%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSES 68 + + L ++ ++AG P+ A + ++ + + GL L E+ Sbjct: 77 ERAAEALEGLLVTVIAHLQAGRPLRQAWIEAAREVAAPVLEPAKGEFLAALGAGLPLEEA 136 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + L+ + V S + GG+++ + + LR+++ A+V A + EA+ Sbjct: 137 LGLWHGQTGLRALRRCQAVASAHRRTGGDVTGPTLAVIQSLREQRLAWAEVAARTAEARL 196 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 SA ++ LP V+ P ++ L DP G L A L G+ ++R + Sbjct: 197 SARLLALLPVAVAAYALAMDPAFLGPLWEDPLGRGGLLYAVVSWLAGLYLLRRL 250 >gi|148272481|ref|YP_001222042.1| putative pilus assembly protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830411|emb|CAN01346.1| conserved membrane protein, putative pilus assembly protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 287 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 68/173 (39%), Gaps = 3/173 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + +P+ +D +V +VRAG+ + DAVA + +R FR S + ++ + Sbjct: 109 EVWPDVVDHLVSAVRAGMGLPDAVASLAVAGPAVLRPAFRDFASVHRTTGSFAVALDELK 168 Query: 74 RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G L + L L+R LR+ ++++ +A +A + Sbjct: 169 DQLADPTADRILETLRMAREVGGTQLPDVLRGLARFLREEAAIRSEAEARQSWVVNAAKL 228 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + P+ + L+ + G +++ V I +M + Sbjct: 229 GVAAPWIILALLSTRHEAVAA--YDTAAGTVVIVVGLVVSAIAYRLMLALGRL 279 >gi|326771893|ref|ZP_08231178.1| bacterial type II secretion system protein F domain-containing protein [Actinomyces viscosus C505] gi|326638026|gb|EGE38927.1| bacterial type II secretion system protein F domain-containing protein [Actinomyces viscosus C505] Length = 284 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 68/173 (39%), Gaps = 3/173 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + +P A+D +V VRAG+ + +A+ + + + VR +FR S+ R+ Sbjct: 106 EVWPEAVDTLVSGVRAGMSLPEALTNLGERGPEAVRPQFRAFATDYAASARFDSSLDRLK 165 Query: 74 RYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G +L L +LS++LR+ + +++A A + Sbjct: 166 ARFADPVADRIVEALRLAHEVGGTDLGTLLRSLSQMLREDMRTRGELEARQSWTVNGAKV 225 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + P+ V L+ S G ++L + A +I +M + Sbjct: 226 AVAAPWLVLALLS--SRPQAAAAYATGAGAVILLIGAVVSVIAYRLMLRLGRL 276 >gi|322419939|ref|YP_004199162.1| Type II secretion system F domain-containing protein [Geobacter sp. M18] gi|320126326|gb|ADW13886.1| Type II secretion system F domain protein [Geobacter sp. M18] Length = 303 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + H +R K P+ LD+I V AGL + A+ ++DP+ E + Sbjct: 143 LYHQYNERQLKIFHTLPDILDLITVCVDAGLSMDAALIKTTETPQFANDPLAKEIKIATM 202 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G ES+ M + +V F T++S + G +LS+AL+ + LR ++ A Sbjct: 203 ETRAGKPRIESLKDMAERTMVDDVRAFVTMLSQTERFGTSLSQALSVHAESLRTKRRQMA 262 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + A K +I + + ++ P Y+ + Sbjct: 263 EEAAAKTTIKMVFPLILFIFPALLVVI--LGPAYVQI 297 >gi|317122038|ref|YP_004102041.1| hypothetical protein Tmar_1201 [Thermaerobacter marianensis DSM 12885] gi|315592018|gb|ADU51314.1| hypothetical protein Tmar_1201 [Thermaerobacter marianensis DSM 12885] Length = 274 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 1/171 (0%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRM 72 + + L ++ ++AG P+ A + + + + GLSL E++ + Sbjct: 94 EALESVLVTVIAHLQAGRPLRQAWVEAAREVVAPVLEPAKAEFVAGLSAGLSLDEALGQW 153 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 L+ + V + + GG+ + + LR+++ A V A + EA+ SA + Sbjct: 154 YERTRLRALRRCQAVAAAHRRTGGDATGPTLAVIHGLREQRLAWADVAARTAEARLSARL 213 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + LP V+ P ++ L NDP G L A L GI ++R + Sbjct: 214 LALLPVVVTAYALALDPAFVRPLWNDPLGRWGLSYGVASWLAGIYLLRRLA 264 >gi|218893622|ref|YP_002442491.1| still frameshift type 4 fimbrial biogenesis protein PilC [Pseudomonas aeruginosa LESB58] gi|218773850|emb|CAW29664.1| still frameshift type 4 fimbrial biogenesis protein PilC [Pseudomonas aeruginosa LESB58] Length = 405 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 20/170 (11%), Positives = 54/170 (31%), Gaps = 6/170 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + + AG+P+ + +I +R + + G SL+ S+ + Sbjct: 67 DIALFTRQMSTMMAAGVPLLQSFDIISEGFDNPNMRKLVEEIKQEVAGGNSLANSLRKKP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G L L ++ + +KAK++ A + Sbjct: 127 Q-----YFDSLYCNLVDAGEQSGALETLLDRVATYKEKTEALKAKIKKAMTYPIAVIVVA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + V + ++ + + +L ++ L++ Sbjct: 182 IIVSAILLIKVVPQFQSVFEGFGAELPAFTMMVINISNVLQEWWLLVLLM 231 Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 43/129 (33%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG+P+ +A+ + G + + V ++ + G+ L+ S+ Sbjct: 277 RTLSTTFAAGVPLVEALDSVSGATGNVVFRDAVGKIKQDVSTGMQLNFSMRT------TN 330 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + ++ + G L + LA ++ + ME A + + Sbjct: 331 IFPSMAIQMTAIGEESGALDDMLAKVAGFYEQEVDNAVDNLTALMEPMIMAVLGVLVGGL 390 Query: 140 VSTLVYFTS 148 + + Sbjct: 391 IIAMYLPIF 399 >gi|194366949|ref|YP_002029559.1| type II secretion system protein [Stenotrophomonas maltophilia R551-3] gi|194349753|gb|ACF52876.1| type II secretion system protein [Stenotrophomonas maltophilia R551-3] Length = 419 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 20/171 (11%), Positives = 55/171 (32%), Gaps = 6/171 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + +++G+P+ A+ +I G + ++ V G SL E++S+ Sbjct: 79 KDIAFFSRQMATMMKSGVPIVGALDIIASGHKNPRMKKMVDSVRTDIEGGSSLYEAVSKH 138 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L ++ + +++K K++ + Sbjct: 139 PVQ-----FDELYRNLVRAGEGAGVLETVLDTVATYKENIESLKGKIRKALFYPVMVMAV 193 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + V + + V + ++ + L++ Sbjct: 194 ALLVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWLILIV 244 Score = 35.5 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 14/136 (10%), Positives = 37/136 (27%), Gaps = 5/136 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + +AG+P+ +A+ ++ G + + V + + + Sbjct: 282 NSAIARFARTTAVTFKAGVPLVEALGIVAGATGNTVYEDAVLRMRDDVSVGYPVNVSMKQ 341 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P ++ + G L L ++ N + +E +I Sbjct: 342 TNLFPH-----MVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPMIMVFI 396 Query: 133 IGSLPFCVSTLVYFTS 148 + V + Sbjct: 397 GTIVGGMVIGMYLPIF 412 >gi|24375595|ref|NP_719638.1| MSHA biogenesis protein MshG [Shewanella oneidensis MR-1] gi|24350490|gb|AAN57082.1|AE015842_2 MSHA biogenesis protein MshG [Shewanella oneidensis MR-1] Length = 406 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 20/165 (12%), Positives = 53/165 (32%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 D+ + R+G+P+ A+A + + ++ + E G LS ++++ Sbjct: 64 DELQIFTRQMYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSAMNQH 123 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L +A LS + + + +++A Sbjct: 124 PD-----VFDSLFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRIKAAMRYPIFVLIA 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 IG ++ +V + D + + + + + Sbjct: 179 IGLAMVILNIMVIPKFAEMFSRFGADLPWATKVLIGTSNLFVNYW 223 Score = 38.9 bits (89), Expect = 0.28, Method: Composition-based stats. Identities = 9/132 (6%), Positives = 35/132 (26%), Gaps = 5/132 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + AG+P++ A++++ + + + + S + Sbjct: 269 LARYCRSFSMMLSAGVPMTQALSLVADAVDNAYMHDKIVGMRR-----GIESGESMLRVS 323 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + + G + + L + + + K +E + Sbjct: 324 NQSKLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGIVAVI 383 Query: 136 LPFCVSTLVYFT 147 + + Sbjct: 384 VLILALGIYLPM 395 >gi|120406354|ref|YP_956183.1| type II secretion system protein [Mycobacterium vanbaalenii PYR-1] gi|119959172|gb|ABM16177.1| type II secretion system protein [Mycobacterium vanbaalenii PYR-1] Length = 260 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 62/171 (36%), Gaps = 1/171 (0%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 ALD+++ +R G A+ +S + V LG ++ + Sbjct: 85 AALQGALDVLIGELRVGAHPVAAMNTAAQESDARIAGALGAVAARALLGADVAAGLRAQG 144 Query: 74 RYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R L + + G ++ + R + +R+ + +V+A A+A+A I Sbjct: 145 RRSLLPGHWDRLAVCWHLAQAQGLAIATLMLAAQRDIAERERFRGRVEAGLAGARATAAI 204 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + LP L + ++ L + G LL F+ G++ + Sbjct: 205 LAGLPVLGVLLGHAIGAEPLSFLFSGGFGGWLLVTGTVFVCCGLLWSDRIT 255 >gi|28493157|ref|NP_787318.1| hypothetical protein TWT190 [Tropheryma whipplei str. Twist] gi|28476197|gb|AAO44287.1| unknown [Tropheryma whipplei str. Twist] Length = 294 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 73/181 (40%), Gaps = 4/181 (2%) Query: 7 KRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +R + +P+ ++ ++ +VRAG+ + +A+ + +R F + + Sbjct: 108 RRLVSLDSNIWPDIVENVISAVRAGMGLPEALCSLSRFGPVRIRQIFCNLENEYGATGNF 167 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSM 124 + +++ + + + + LGG+ L + L NLS +R+ +A++ Sbjct: 168 ASAVANAKCALADPKADRILETVQLARSLGGSELIKVLRNLSEYMREDLATRAEIVGRQS 227 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +A I + P+ V ++ + N G +++ + A I +M ++ Sbjct: 228 WVVNAARIAVAAPWAVLAIMSTRAETVSA--YNSQAGVVVIILGALSCAIAYKIMMVVAR 285 Query: 185 F 185 Sbjct: 286 I 286 >gi|308050051|ref|YP_003913617.1| Type II secretion system F domain protein [Ferrimonas balearica DSM 9799] gi|307632241|gb|ADN76543.1| Type II secretion system F domain protein [Ferrimonas balearica DSM 9799] Length = 321 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 62/158 (39%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + R K + FP+ALD++V +G + A+ + + S + E V + Sbjct: 160 LDRFAASRMRKIRNGFPDALDLLVVCCESGQGLLAALQRVSVELRVSHKELAEELLLVCQ 219 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ LS ++ L ++ + I+ +LG ++E L + RD++ A Sbjct: 220 KNRAGIELSTALHEFSERTGLDDIRGLNGAITQSLRLGTGIAETLRVYADEYRDKRMQAA 279 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + A + K ++ + + P + V+ Sbjct: 280 EEMAAKLGVKIIFPMLTCIWPS--FFIVAVGPAVIKVM 315 >gi|329946365|ref|ZP_08293932.1| bacterial type II secretion system protein F domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328527341|gb|EGF54339.1| bacterial type II secretion system protein F domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 317 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 53/146 (36%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KR ++ P+ ++++ +V AG A+ +V + E + Sbjct: 162 LSRAVAKRLSRIETQLPDVVELLALAVGAGQGPVAAIERVVALGRGDLIDELGTTLTDIR 221 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G LS ++ RM R + V+ I V + G L+E L + + +R+ + Sbjct: 222 SGTVLSTALDRMERRVGSVHVTRLCEAIVVALERGTPLAEVLRSQATDVREAARQDLMEE 281 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146 E ++ + F Sbjct: 282 GGRREIAQMVPVVFLVLPITVVFALF 307 >gi|238782877|ref|ZP_04626906.1| Type II secretion system protein [Yersinia bercovieri ATCC 43970] gi|238716300|gb|EEQ08283.1| Type II secretion system protein [Yersinia bercovieri ATCC 43970] Length = 264 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 55/147 (37%), Gaps = 2/147 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI--ET 58 +K +I +R L P +DI V++G+ + +++ + ++ Sbjct: 104 IKKIIARRVESILKSLPFFIDITAACVQSGMTIDSSLSYAARKFELINPDLSLIILKMAK 163 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + L +I + + E+ F + + G + + L LS+ +R+ + + + Sbjct: 164 RAEINGLESAIKELHQCSTATEIKMFCSTLQYSISFGSTVYDQLIKLSQDIREMQLLVTE 223 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVY 145 + + K + + + LV Sbjct: 224 EKISKLSTKLTLPLFIFILIPFVVLVI 250 >gi|78048910|ref|YP_365085.1| fimbrial assembly protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037340|emb|CAJ25085.1| Fimbrial assembly protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 420 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 21/168 (12%), Positives = 52/168 (30%), Gaps = 6/168 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + +++G+P+ ++ +I + ++ +V G SL ESISR Sbjct: 80 KDIAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMKKMVGQVRTDIEGGSSLYESISRH 139 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L ++ + + +K K++ + Sbjct: 140 PVQ-----FDELYRNLVRAGEGAGVLETVLDTVATYKENIEALKGKIKKALFYPAMVIAV 194 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + V + + V A+ ++ + Sbjct: 195 ALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVGASRFMVSYWWIM 242 >gi|312958905|ref|ZP_07773424.1| type IV pilus assembly protein PilC [Pseudomonas fluorescens WH6] gi|311286675|gb|EFQ65237.1| type IV pilus assembly protein PilC [Pseudomonas fluorescens WH6] Length = 402 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 55/166 (33%), Gaps = 6/166 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + + ++AG+P+ A +I + PVR + + + G SL+E++ + Sbjct: 63 AEITLLTRQLATLLKAGIPLLQAFDIIGEGFDNAPVRDLAQGLKQQIAAGSSLAEALHKH 122 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R + + G L L ++ + +KA+++ A + Sbjct: 123 PR-----YFDDLYCNLVAAGEQAGALETLLERVAVHREKSEQLKARIKKAMTYPIAVLVV 177 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 G + + V + G L +A + + Sbjct: 178 AGLVTGVLLVHVVPQFQSLFAGVDGQLPGFTLQVIALSEFMQRAWW 223 Score = 38.6 bits (88), Expect = 0.45, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 41/129 (31%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG+P+ A+ + G + S P + + G+ L+ S++ Sbjct: 274 RTLSTTFAAGVPLVQALDSVAGATGSQPFKKAIEHMRRDVSTGMQLNHSMASSGL----- 328 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + ++ + G L L ++ + + ME + G + Sbjct: 329 -FPAMAVQMTAIGEESGTLERMLEKVASHYEADVDNQVDNLTSLMEPVIMVVLGGIVGAL 387 Query: 140 VSTLVYFTS 148 V + Sbjct: 388 VIAMYLPVF 396 >gi|309810754|ref|ZP_07704561.1| type II secretion system F domain protein [Dermacoccus sp. Ellin185] gi|308435291|gb|EFP59116.1| type II secretion system F domain protein [Dermacoccus sp. Ellin185] Length = 290 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 69/173 (39%), Gaps = 3/173 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + +P+A+D + +VRAGL + +A+ + + +R +F +S+ + Sbjct: 112 EAWPDAVDHVASAVRAGLSIPEALRQLSLHGPEVLREDFAAFARHDAAHGRFDDSLDVLK 171 Query: 74 RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G ++ L LS LR+ + +A++ A ++A + Sbjct: 172 ARLADPAADRLIESLRLARNVGGSDVGRLLRTLSSFLREDASTRAELAAKQSWTVSAARL 231 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + P+ +V F G P+G ++L A I + M+ + Sbjct: 232 ALAAPWLALCVVGFRGEGLAA--YRTPQGVLVLVAGALVSWIAYVAMKAIGRL 282 >gi|167836684|ref|ZP_02463567.1| Bacterial type II secretion system protein F domain [Burkholderia thailandensis MSMB43] Length = 310 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 65/146 (44%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + +I++R + P+ALD++V AG + A+ + + P+ EF + Sbjct: 150 LDLMIRQRQKRIAAYLPDALDLLVICTNAGNSLVVAIKRVASELKMICPPLADEFAVTAD 209 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G +S +++ + + + + T + Q G ++++L LSR R + + Sbjct: 210 ELQIGGDISSALNALAKRIAVPSTRALVTTLVQSQQYGTPITQSLRQLSRTERSMQIVAL 269 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K S ++ + V+ + Sbjct: 270 EEKAAKLAPKMSLPMLLFIMPTVALI 295 >gi|320104346|ref|YP_004179937.1| type II secretion system F domain-containing protein [Isosphaera pallida ATCC 43644] gi|319751628|gb|ADV63388.1| Type II secretion system F domain protein [Isosphaera pallida ATCC 43644] Length = 415 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 22/176 (12%), Positives = 61/176 (34%), Gaps = 12/176 (6%) Query: 6 KKRTAKF------LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIET 58 +KR F + AGLP+ ++ ++ Q+ +++ V+E Sbjct: 61 RKRKKSFTIGGLSNKKLCLFTRQLSTLQDAGLPILRSLKILENQAKPGVLKNVLGDVVED 120 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G +LSE++++ + + + GG L L L+ ++++ + Sbjct: 121 IESGSTLSEAMAKHPKA-----FDRLYCNMIKAGEAGGALETILQRLADFKEKAQSLRRR 175 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 ++ + ++ + + + D + + A+ ++I Sbjct: 176 IKGAMVYPIVVIFVAFVIVGFILYFIIPKFEAIFKDFDVDLPQMTIWLIEASHIII 231 >gi|332670514|ref|YP_004453522.1| Type II secretion system F domain-containing protein [Cellulomonas fimi ATCC 484] gi|332339552|gb|AEE46135.1| Type II secretion system F domain protein [Cellulomonas fimi ATCC 484] Length = 410 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 20/179 (11%), Positives = 56/179 (31%), Gaps = 19/179 (10%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D + + +GL + A+A++ Q+ P+ +V +G++ S ++ + Sbjct: 71 KDLAVMSRQLATMIDSGLSLLRALAILSEQTESKPLAKVLAQVRSDVEVGVAFSTALGKH 130 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P + ++GG L E L +++ ++ K+++ + Sbjct: 131 PTVFPP-----LMINMVKAGEVGGFLDETLVSVANNFEAEVKLRGKIKSAMTYPVVVFVV 185 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRG-------------HMLLGVAAAFMLIGIMV 178 + + G + L ++ A ++ + Sbjct: 186 AILATTGMLLFIVPIFAGMFSSLGGTLPLPTRILMFLSQALKITIIPTVIALIVFAVWW 244 Score = 43.6 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 15/134 (11%), Positives = 35/134 (26%), Gaps = 5/134 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + AG+P+ A+ ++ S + V + ++ S+ S Sbjct: 275 AISRFTRNFGTMIHAGVPLLQALEIVGETSGNIVIERAAKAVQE-----SVRRGESLAGP 329 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + G L LA ++ + +E I Sbjct: 330 LSQHEVFPPMVVQMMAVGEDTGALDTMLAKVADFYDQEVESTTEQLTSLIEPIMIVVIGA 389 Query: 135 SLPFCVSTLVYFTS 148 + V + Sbjct: 390 IVGAMVIAMYMPIF 403 >gi|260202856|ref|ZP_05770347.1| hypothetical protein MtubK8_00867 [Mycobacterium tuberculosis K85] gi|289572304|ref|ZP_06452531.1| transmembrane protein [Mycobacterium tuberculosis K85] gi|289536735|gb|EFD41313.1| transmembrane protein [Mycobacterium tuberculosis K85] Length = 266 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 63/172 (36%), Gaps = 1/172 (0%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 AL+++V +RAG A ++ ++ PV R V LG ++ + Sbjct: 91 QALEAALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAA 150 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR-ILRDRKNMKAKVQALSMEAKASAWI 132 R L V G +L ++ + +R+ A+V A A+ASA I Sbjct: 151 RSSALPAYWERLAVWWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAI 210 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + LP L ++ L+ G LL V G++ + + Sbjct: 211 LAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITD 262 >gi|312621919|ref|YP_004023532.1| type ii secretion system f domain [Caldicellulosiruptor kronotskyensis 2002] gi|312202386|gb|ADQ45713.1| Type II secretion system F domain [Caldicellulosiruptor kronotskyensis 2002] Length = 403 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 20/149 (13%), Positives = 49/149 (32%), Gaps = 9/149 (6%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLS 66 R + D + AG+P+ A+ VI Q + + G LS Sbjct: 57 RKKIPIKDLAVFCRQFATMLMAGIPMVSALDVIAEQFKGRYFGKVLEDIHKKVQSGSMLS 116 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ P + ++ G++ +AL ++ ++ K+ + Sbjct: 117 RALTEKAECFP-----SILINMIEAGEMSGSVDQALDRMATHFEKELKLRQKIINALIYP 171 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 +I + ++ F P ++ + Sbjct: 172 A---IVILVAIGVLIIMLTFVVPTFVGIF 197 Score = 34.7 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+ + A+ ++ V +F VIE G LS I+ + Sbjct: 271 FTRTLGTMTAAGVSIVIALETTKNVMTNVFVEKKFEEVIERVQRGEGLSYPIAEVG---- 326 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + GNL L + + + E + + Sbjct: 327 --IFPRLVEIMIRTGEESGNLEYMLNKAADYYENEVENQVTRLTSIFEPIMIVLLAIMVG 384 Query: 138 FCVSTLVYFTS 148 F +++++ Sbjct: 385 FLLASIILPIF 395 >gi|254444010|ref|ZP_05057486.1| Bacterial type II secretion system protein F domain [Verrucomicrobiae bacterium DG1235] gi|198258318|gb|EDY82626.1| Bacterial type II secretion system protein F domain [Verrucomicrobiae bacterium DG1235] Length = 422 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 67/185 (36%), Gaps = 25/185 (13%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVR 74 + ++AGL + ++ V+ Q + V ++E+ G + S++++ + Sbjct: 81 LSEFTRKLATLLQAGLTLIRSLEVLKDQEKNVVFRWIQNSLVESIQSGSTFSDALANFPK 140 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 E F ++ + G L +LA L+ L + MK+++ + ++ Sbjct: 141 -----EFDFLYVNMARAGEASGMLEVSLARLATYLEKTERMKSRLASAMTYPT---VVMI 192 Query: 135 SLPFCVSTLVYFTSPGYMNVLIND----------------PRGHMLLGVAAAFMLIGIMV 178 V L+ F P + + I++ + +IG+ V Sbjct: 193 LSSIIVMGLLVFVVPSFKQIFIDEIGEDKMPMLTVYVLMVSEFLVAYWYVVIGAVIGLFV 252 Query: 179 MRLMI 183 + ++ Sbjct: 253 FKKLV 257 >gi|91791492|ref|YP_561143.1| general secretion pathway protein F [Shewanella denitrificans OS217] gi|91713494|gb|ABE53420.1| General secretion pathway protein F [Shewanella denitrificans OS217] Length = 407 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 61/173 (35%), Gaps = 8/173 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D I V AGLP+ +A+ + QS D + S V G SL++S++ Sbjct: 67 ADLALITRQIATLVAAGLPIEEALKAVGQQSEKDRLGSMIMAVRSRVVEGYSLADSLAEF 126 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G+L L L+ R+ +K+K+ + + Sbjct: 127 P-----HIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKLTQAMIYPVVLTLV 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183 + + V G + + G L+ + G++V+ L++ Sbjct: 182 AIGVIGVLLAAVVPKVVGQFEHMGQELPGTTQFLILASDFVQSYGVLVIGLIV 234 >gi|256786940|ref|ZP_05525371.1| integral membrane protein [Streptomyces lividans TK24] Length = 234 Score = 68.2 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 5/183 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + ++R + + VRAG +A+ S+ + V+ Sbjct: 51 RRAKERRQDAVIA----LCGTLAGEVRAGRQPGEALLCAAQDSAG-LGEAQAAVLAAARF 105 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + +++ + + + V G L+ L L LR ++ ++ ++A Sbjct: 106 GGDVPGALALAAGQPGAEGLRGLAACWRVAVDQGAGLAAGLDRLEGALRAERDQRSDLRA 165 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 A+A+A ++ LP L ++VL++ G L +G+ + Sbjct: 166 QLAGARATAVMLAGLPVLGLLLGVALGSDPLHVLLHTGAGVGCLLAGGVLESLGVWWVTR 225 Query: 182 MIN 184 ++ Sbjct: 226 IVR 228 >gi|78060306|ref|YP_366881.1| putative Flp pilus assembly protein TadC [Burkholderia sp. 383] gi|77964856|gb|ABB06237.1| putative Flp pilus assembly protein TadC [Burkholderia sp. 383] Length = 324 Score = 68.2 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 75/167 (44%), Gaps = 4/167 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + +K R K +DFP+ALD++ V AGL + A+ + + SS+ V SE ++ Sbjct: 157 LSQRVKVRQQKIFEDFPDALDLLTVCVEAGLGLDAALMKVSEELRFSSEVVASELDLLLL 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + ++++ F ++ + G ++SE+L LS +LR R+ M+A Sbjct: 217 EMRSGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESLRVLSDMLRTRRRMRA 276 Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 + +A + I P + L+ VL+ G Sbjct: 277 EERAAKIALKLLFPLIFCIFPALMLVLLGPAMIHVYRVLLPTFVGIA 323 >gi|13959696|sp|P22609|PILC_PSEAE RecName: Full=Type 4 fimbrial assembly protein pilC Length = 374 Score = 68.2 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 19/170 (11%), Positives = 51/170 (30%), Gaps = 7/170 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + + AG+P+ + +I +R + + G SL+ S+ + Sbjct: 35 DIALFTRQMATMMGAGVPLLQSFDIIGEGFDNPNMRKLVDEIKQEVSSGNSLANSLRKKP 94 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G L L ++ +++KAK++ A + Sbjct: 95 Q-----YFDELYCNLVDAGEQSGALENLLDRVATYKEKTESLKAKIRKAMTYPIAVIIVA 149 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + V + + V + + +++ Sbjct: 150 LIVSAILLIKVVPQFQSVFQGFGAELPAFTQMVVNL-SEFLQEWWLAVIV 198 Score = 38.2 bits (87), Expect = 0.56, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 45/129 (34%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG+P+ DA+ + G + + V ++ + G+ L+ S+ Sbjct: 245 RTLSTTFAAGVPLVDALDSVSGATGNIVFKNAVSKIKQDVSTGMQLNFSMRTTS------ 298 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + ++ + G+L E L+ ++ + + ME A + + Sbjct: 299 VFPNMAIQMTAIGEESGSLDEMLSKVASYYEEEVDNAVDNLTTLMEPMIMAVLGVLVGGL 358 Query: 140 VSTLVYFTS 148 + + Sbjct: 359 IVAMYLPIF 367 >gi|197295161|ref|YP_002153702.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] gi|195944640|emb|CAR57244.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] Length = 324 Score = 67.8 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 4/167 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + +K R K +DFP+ALD++ V AGL + A+ + + S+ V SE ++ Sbjct: 157 LSQRVKVRQQKIFEDFPDALDLLTVCVEAGLGLDAALMKVSEELRFRSEVVASELDLLLL 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + ++++ F ++ + G ++SE+L LS +LR R+ M+A Sbjct: 217 EMRSGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESLRVLSDMLRTRRRMRA 276 Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 + +A + I P + L+ VL+ G Sbjct: 277 EERAAKIALKLLFPLIFCIFPALMVVLLGPAMIHVYRVLLPTFVGIA 323 >gi|154488953|ref|ZP_02029802.1| hypothetical protein BIFADO_02262 [Bifidobacterium adolescentis L2-32] gi|154083090|gb|EDN82135.1| hypothetical protein BIFADO_02262 [Bifidobacterium adolescentis L2-32] Length = 425 Score = 67.8 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 20/179 (11%), Positives = 54/179 (30%), Gaps = 18/179 (10%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 DF + V AG+ + A+ ++ Q + +R + + G S S ++S Sbjct: 82 KDFAVMARQLATMVAAGVSLIRALNIVTEQIENVKLRKAVQACVAQVEGGSSFSGAMSAD 141 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + GG L ++L ++ ++ ++++ I Sbjct: 142 PDSLFPP----IMVNMVRAGETGGFLDKSLLTVADSFEADVRLQGQIKSAMAYPVVVLGI 197 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGH-------------MLLGVAAAFMLIGIMV 178 L + + + + +L + A + + + Sbjct: 198 ALILVMVMLLTIVPMFASMYDSMNAQLPFVTQILVDLGKVMPYVLPVLIVAVVALAMFW 256 Score = 40.5 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 15/137 (10%), Positives = 40/137 (29%), Gaps = 5/137 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + + +G+P+ A+ ++ S + V + +G + Sbjct: 287 ALARFCNNFSSMLASGVPILQALDIVGSTSGNYVIDSSSK-----RVGRLVERGYRLADS 341 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + G + + L++ R + AK +E ++ Sbjct: 342 MSTEKIFPNMLVQMVAIGEDSGAIDKMLSSAGRAYDEEAQSMAKQLTSLLEPLMILFLGV 401 Query: 135 SLPFCVSTLVYFTSPGY 151 + F V L + Sbjct: 402 VVGFMVVALYMPMFSMF 418 >gi|126640410|ref|YP_001083394.1| type 4 fimbrial assembly protein [Acinetobacter baumannii ATCC 17978] Length = 376 Score = 67.8 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 17/177 (9%), Positives = 50/177 (28%), Gaps = 15/177 (8%) Query: 1 MKHLIKKRTAKFL---------DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51 ++++ +KR D + ++AG+P+ ++ +P E Sbjct: 15 VRNIREKRKNILEGLFKKKVTTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMRE 74 Query: 52 FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 + G + + ++ + ++ + + G L L ++ Sbjct: 75 VVLGIKGEVEGGSTFASALRKYPQH-----FDNLFCSLVESGEQSGALETMLDRVAIYKE 129 Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 + +K K++ + + + V D + V Sbjct: 130 KSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVV 186 Score = 37.4 bits (85), Expect = 0.84, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 40/129 (31%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG+P+ DA+ G +++ + ++ E G L ++ R Sbjct: 248 RTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVATGQQLQFAMRVSNR----- 302 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + + G L L ++ + + ME A + + Sbjct: 303 -FPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGL 361 Query: 140 VSTLVYFTS 148 V + Sbjct: 362 VIAMYLPIF 370 >gi|313835699|gb|EFS73413.1| type II secretion system F domain protein [Propionibacterium acnes HL037PA2] gi|314928370|gb|EFS92201.1| type II secretion system F domain protein [Propionibacterium acnes HL044PA1] gi|314970222|gb|EFT14320.1| type II secretion system F domain protein [Propionibacterium acnes HL037PA3] gi|328908049|gb|EGG27808.1| LOW QUALITY PROTEIN: Type II secretion system F domain protein [Propionibacterium sp. P08] Length = 301 Score = 67.8 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 56/134 (41%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +K+R + D P+ +D++ +V AG+ A+ + + P+ E + ++ G S Sbjct: 143 VKRRKEQIDQDLPSFMDVLAVTVTAGIGFRRALRTVSERYGGPLADEIQLTLQHVDNGAS 202 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + + V F + +LG L + L +++ +R A +A + Sbjct: 203 MRQAFTALRDRTGSAAVDEFVSAYVQSEELGAPLVDTLNHIAADMRRSSAQAALQRASRI 262 Query: 125 EAKASAWIIGSLPF 138 E + S + Sbjct: 263 EPRVSLVTTTVMVP 276 >gi|254517637|ref|ZP_05129693.1| type II secretion system protein [Clostridium sp. 7_2_43FAA] gi|226911386|gb|EEH96587.1| type II secretion system protein [Clostridium sp. 7_2_43FAA] Length = 400 Score = 67.8 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 17/154 (11%), Positives = 45/154 (29%), Gaps = 7/154 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + AG+ ++ + ++ + + E +IE L Sbjct: 61 TKDLAIFCRQFYTMLDAGVTITTCLNILSNEIPNKKLRELLSIIEDDVKKGEL----LSE 116 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + ++ GN+ E + +S + KV++ + Sbjct: 117 SMAKHKKYFPQLLISMVESGEVSGNIDEMMLRMSVHFEKENKINNKVKSAMTYPS---IL 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 V ++ F P ++ + + L+ Sbjct: 174 SIVAVIAVVFIMTFVMPTFIEMFEGEGIDLPLIT 207 Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats. Identities = 16/137 (11%), Positives = 40/137 (29%), Gaps = 7/137 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77 + + +G+ + A+ + G + V ++ E G LS I Sbjct: 270 FTRTLSTLLASGVSLVHALPTVAGVLENKVAEDAILKIRERVVRGDGLSGPIRE------ 323 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G+L + L + D + +E + + Sbjct: 324 NNIFPKMLSSMIKIGEESGSLDDILNKTADFYDDEVEQAIQTATSMIEPLLIVIMGVVIG 383 Query: 138 FCVSTLVYFTSPGYMNV 154 V +++ Y + Sbjct: 384 GIVISIMLPMFDMYTQM 400 >gi|148261008|ref|YP_001235135.1| type II secretion system protein [Acidiphilium cryptum JF-5] gi|146402689|gb|ABQ31216.1| type II secretion system protein [Acidiphilium cryptum JF-5] Length = 307 Score = 67.8 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 65/147 (44%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ K+ K +ALD++V AGL + A+ + G+ + V EF + Sbjct: 149 IQQRRKRFIQKVEGGLADALDLMVICADAGLSLESALVRVAGELQLTHPAVAQEFTLTAQ 208 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G ++ +S++ + L + ++ + Q G L++AL LS LR + + Sbjct: 209 EMRIGGNIRDSLNALGVRTGLDSLKRLASTLIQTLQYGTPLTQALRTLSSELRQEQLTRF 268 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + +A + + +I + CV +V Sbjct: 269 EERAARLPVLLTLPMIIFILPCVFLVV 295 >gi|222529861|ref|YP_002573743.1| type II secretion system protein [Caldicellulosiruptor bescii DSM 6725] gi|222456708|gb|ACM60970.1| type II secretion system protein [Caldicellulosiruptor bescii DSM 6725] Length = 403 Score = 67.8 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 21/149 (14%), Positives = 50/149 (33%), Gaps = 9/149 (6%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLS 66 R + D + AG+P+ A+ VI Q D + + G LS Sbjct: 57 RKKIPIKDLAVFCRQFATMLMAGIPMVSALDVIAEQFKDRYFGKVLEDIHKKVQSGSMLS 116 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ P + ++ G++ +AL ++ ++ K+ + Sbjct: 117 RALAEKAECFP-----SILVNMIEAGEMSGSVDQALDRMATHFEKELKLRQKIINALIYP 171 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 +I + ++ F P ++ + Sbjct: 172 A---IVILVAIGVLIIMLTFVVPTFVGIF 197 Score = 34.7 bits (78), Expect = 6.4, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+ + A+ ++ V +F VIE G LS I+ + Sbjct: 271 FTRTLGTMTAAGVSIVIALETTKNVMTNVFVEKKFEEVIERVQRGEGLSYPIAEVG---- 326 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + GNL L + + + E + + Sbjct: 327 --IFPRLVEIMIRTGEESGNLEYMLNKAADYYENEVENQVTRLTSIFEPIMIVLLAIMVG 384 Query: 138 FCVSTLVYFTS 148 F +++++ Sbjct: 385 FLLASIILPIF 395 >gi|86740440|ref|YP_480840.1| putative integral membrane protein [Frankia sp. CcI3] gi|86567302|gb|ABD11111.1| putative integral membrane protein [Frankia sp. CcI3] Length = 302 Score = 67.8 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 19/182 (10%), Positives = 57/182 (31%), Gaps = 2/182 (1%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 + R + + ++ A + A+ + +RSE + L Sbjct: 94 QARQVARTQGIAVWAEQLRDTLAAAAGLEQAILATAQTAPAAIRSEIALLAARIERRERL 153 Query: 66 SESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ + + + + LS L L+ R + +M +++ Sbjct: 154 GPALRGLADDLDDPLADLVIGALILASEHQARQLSGLLGQLAATARAQVDMLGRIEVGRA 213 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + + ++ + + + +++ + G ++L A G + +R M Sbjct: 214 RMRTTMRVVVVTSIVFAGGLVVFNRPFLDP-YSTAAGQLVLLAIGAIFAAGFVWLRRMAR 272 Query: 185 FD 186 + Sbjct: 273 IE 274 >gi|325109102|ref|YP_004270170.1| type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] gi|324969370|gb|ADY60148.1| Type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] Length = 416 Score = 67.8 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 56/163 (34%), Gaps = 6/163 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + AGLP+ ++ ++ P+++ VIE G +LSE+++R + Sbjct: 79 LCTFTRQLSTLQDAGLPILRSLRILESQSKPGPLKNSLIGVIEDVESGNTLSEAMTRQPK 138 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + GG L L L+ +++K KVQ + + + G Sbjct: 139 A-----FDNLYCNMVKAGEAGGALEVILQRLAEFKEKSQSLKRKVQGAMIYPVSVLTVAG 193 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + + + + + + +++ Sbjct: 194 GIVGFIMYFIIPKFKEIFMGFGIELPAVTVALITVSDLVVNYF 236 >gi|91775991|ref|YP_545747.1| type II secretion system protein [Methylobacillus flagellatus KT] gi|91709978|gb|ABE49906.1| type II secretion system protein [Methylobacillus flagellatus KT] Length = 300 Score = 67.8 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 71/157 (45%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 ++ L +R + L ++V +GL + ++ ++V Q+S + E RV+ Sbjct: 138 LRWLAARRRKMISKEITTFLYMLVMLFDSGLSLEHSLRIMVEQASDIMPHLAQELERVLA 197 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G +++ M + + + E+S ++ +Q GGN+ +++ + ++ +R+ Sbjct: 198 RIRAGQDQGKALMSMSQMLDIPELSEAVAMLKQVAQQGGNVRDSIMRYAALIEERQFSHL 257 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + + AK + ++ + + + PG++ + Sbjct: 258 RERVSKLSAKMTIVMMIFMFPALMIFI--AGPGFIGL 292 >gi|15610794|ref|NP_218175.1| transmembrane protein [Mycobacterium tuberculosis H37Rv] gi|15843271|ref|NP_338308.1| hypothetical protein MT3758 [Mycobacterium tuberculosis CDC1551] gi|31794828|ref|NP_857321.1| transmembrane protein [Mycobacterium bovis AF2122/97] gi|121639571|ref|YP_979795.1| putative transmembrane protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663520|ref|YP_001285043.1| putative transmembrane protein [Mycobacterium tuberculosis H37Ra] gi|148824861|ref|YP_001289615.1| transmembrane protein [Mycobacterium tuberculosis F11] gi|167970803|ref|ZP_02553080.1| conserved transmembrane protein [Mycobacterium tuberculosis H37Ra] gi|215424898|ref|ZP_03422817.1| transmembrane protein [Mycobacterium tuberculosis T92] gi|218755437|ref|ZP_03534233.1| transmembrane protein [Mycobacterium tuberculosis GM 1503] gi|219559729|ref|ZP_03538805.1| transmembrane protein [Mycobacterium tuberculosis T17] gi|224992068|ref|YP_002646757.1| putative transmembrane protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253800699|ref|YP_003033700.1| hypothetical protein TBMG_03698 [Mycobacterium tuberculosis KZN 1435] gi|254233154|ref|ZP_04926480.1| hypothetical protein TBCG_03580 [Mycobacterium tuberculosis C] gi|260184575|ref|ZP_05762049.1| hypothetical protein MtubCP_00757 [Mycobacterium tuberculosis CPHL_A] gi|260198698|ref|ZP_05766189.1| hypothetical protein MtubT4_00792 [Mycobacterium tuberculosis T46] gi|289441088|ref|ZP_06430832.1| conserved membrane protein [Mycobacterium tuberculosis T46] gi|289445252|ref|ZP_06434996.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A] gi|289555919|ref|ZP_06445129.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605] gi|289571895|ref|ZP_06452122.1| conserved membrane protein [Mycobacterium tuberculosis T17] gi|289748170|ref|ZP_06507548.1| conserved membrane protein [Mycobacterium tuberculosis T92] gi|289763834|ref|ZP_06523212.1| conserved transmembrane protein [Mycobacterium tuberculosis GM 1503] gi|294992922|ref|ZP_06798613.1| hypothetical protein Mtub2_00045 [Mycobacterium tuberculosis 210] gi|297636334|ref|ZP_06954114.1| hypothetical protein MtubK4_19510 [Mycobacterium tuberculosis KZN 4207] gi|297733327|ref|ZP_06962445.1| hypothetical protein MtubKR_19645 [Mycobacterium tuberculosis KZN R506] gi|306778013|ref|ZP_07416350.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001] gi|306786567|ref|ZP_07424889.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003] gi|306790932|ref|ZP_07429254.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004] gi|306791252|ref|ZP_07429554.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005] gi|306795319|ref|ZP_07433621.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006] gi|306801287|ref|ZP_07437955.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008] gi|306805499|ref|ZP_07442167.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007] gi|306974130|ref|ZP_07486791.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010] gi|313660659|ref|ZP_07817539.1| hypothetical protein MtubKV_19645 [Mycobacterium tuberculosis KZN V2475] gi|2960082|emb|CAA17980.1| PROBABLE CONSERVED TRANSMEMBRANE PROTEIN [Mycobacterium tuberculosis H37Rv] gi|13883629|gb|AAK48122.1| hypothetical protein MT3758 [Mycobacterium tuberculosis CDC1551] gi|31620425|emb|CAD95868.1| PROBABLE CONSERVED TRANSMEMBRANE PROTEIN [Mycobacterium bovis AF2122/97] gi|121495219|emb|CAL73705.1| Probable conserved transmembrane protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124602947|gb|EAY61222.1| hypothetical protein TBCG_03580 [Mycobacterium tuberculosis C] gi|148507672|gb|ABQ75481.1| putative conserved transmembrane protein [Mycobacterium tuberculosis H37Ra] gi|148723388|gb|ABR08013.1| conserved transmembrane protein [Mycobacterium tuberculosis F11] gi|224775183|dbj|BAH27989.1| putative transmembrane protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253322202|gb|ACT26805.1| conserved membrane protein [Mycobacterium tuberculosis KZN 1435] gi|289414007|gb|EFD11247.1| conserved membrane protein [Mycobacterium tuberculosis T46] gi|289418210|gb|EFD15411.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A] gi|289440551|gb|EFD23044.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605] gi|289545649|gb|EFD49297.1| conserved membrane protein [Mycobacterium tuberculosis T17] gi|289688757|gb|EFD56186.1| conserved membrane protein [Mycobacterium tuberculosis T92] gi|289711340|gb|EFD75356.1| conserved transmembrane protein [Mycobacterium tuberculosis GM 1503] gi|308213542|gb|EFO72941.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001] gi|308328819|gb|EFP17670.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003] gi|308332686|gb|EFP21537.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004] gi|308340172|gb|EFP29023.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005] gi|308344146|gb|EFP32997.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006] gi|308347947|gb|EFP36798.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007] gi|308351901|gb|EFP40752.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008] gi|308356402|gb|EFP45253.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010] gi|323717517|gb|EGB26719.1| membrane protein [Mycobacterium tuberculosis CDC1551A] gi|326905493|gb|EGE52426.1| conserved membrane protein [Mycobacterium tuberculosis W-148] gi|328460428|gb|AEB05851.1| conserved membrane protein [Mycobacterium tuberculosis KZN 4207] Length = 266 Score = 67.8 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 1/172 (0%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 AL+++V +RAG A ++ ++ PV R V LG ++ + Sbjct: 91 QALEAALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAA 150 Query: 74 RYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R L + + S G ++ + R + +R+ A+V A A+ASA I Sbjct: 151 RSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAI 210 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + LP L ++ L+ G LL V G++ + + Sbjct: 211 LAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITD 262 >gi|194291073|ref|YP_002006980.1| general secretory pathway protein f, type II secretion system [Cupriavidus taiwanensis LMG 19424] gi|193224908|emb|CAQ70919.1| General Secretory Pathway protein F, type II secretion system [Cupriavidus taiwanensis LMG 19424] Length = 405 Score = 67.8 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 19/178 (10%), Positives = 55/178 (30%), Gaps = 8/178 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 L ++ + + + AGLP+ +A+ + Q+ V + Sbjct: 56 SQLFARKLSTQEQAL--FTRQLASLIVAGLPLDEALGALADQAERPYVHELLAGIRAEVM 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +LS ++++ R + + + G+L L L+ + R + +K++ Sbjct: 114 GGSALSVALAQHPR-----DFPDIYRALVSAGEHSGHLGVVLERLAGYIESRNTLTSKIR 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + ++ + + V ++ + + + Sbjct: 169 LAFTYPAIVTVVAFAIVIFLLSYVVPQVVSVFANTKQKLPTLTIIMLWLSDFVRNWWW 226 >gi|169235695|ref|YP_001688895.1| hypothetical protein OE2212R [Halobacterium salinarum R1] gi|167726761|emb|CAP13547.1| conserved hypothetical protein [Halobacterium salinarum R1] Length = 692 Score = 67.8 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 17/144 (11%), Positives = 44/144 (30%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++R + P+ LD + AG+ ++ V + E R G Sbjct: 460 ARRRRKAIEAEVPDFLDRFASTNEAGMAAVESFGRTVDGDLGALTQELERTWADIQWGAR 519 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + +++R + VS + + GNL L + + ++ + + Sbjct: 520 IEHALTRFRDRVNTPAVSRVVALTTNAMAASGNLGPVLRIAANEATASRRLERDRRNELL 579 Query: 125 EAKASAWIIGSLPFCVSTLVYFTS 148 ++ + + + Sbjct: 580 TYVVVIYVSFFVFIAIIVALDTIF 603 Score = 39.3 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 18/172 (10%), Positives = 51/172 (29%), Gaps = 5/172 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIET 58 ++ +R + + + R+G+P+++ + ++ V + Sbjct: 144 RYAAGERARRIDASMERTVAFMYALSRSGMPLAEVLRILARNQPVYGAAAEEMAVAVTDI 203 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + G + ++ R+ P +++ F+ + Q G +L L + Sbjct: 204 DNYGADIITALERVGSRTPSDDLAEFTENLGSILQSGSDLPAFLKQEYEYYAEEAEATQS 263 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + A A++ + + + G L L Sbjct: 264 QFLELLATLAEAYVTVLVAGPLFLITILVVIGLT--LGGTLGFLRLTAFVLV 313 >gi|90412975|ref|ZP_01220973.1| putative MSHA biogenesis protein MshG [Photobacterium profundum 3TCK] gi|90325990|gb|EAS42429.1| putative MSHA biogenesis protein MshG [Photobacterium profundum 3TCK] Length = 406 Score = 67.8 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 17/164 (10%), Positives = 43/164 (26%), Gaps = 4/164 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + +AG+P+ A+ + +S P+ E + T Sbjct: 65 EALVIFCRQLYSLTKAGVPLLRAIKGLGQSASHPLMKETLDAVMTDLTNG----HSLSAA 120 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + S + + G L E+L L+ + ++++ I Sbjct: 121 MKQHRRVFSDLFVSMIHVGENTGRLDESLLQLAHYFEQEMETRRRIKSAMRYPLFVISAI 180 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++ V D + + + + Sbjct: 181 MLAMVVLNIKVIPQFASMFARFGVDLPLPTRILIGTSNFFVHYW 224 Score = 35.9 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 11/135 (8%), Positives = 29/135 (21%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 +RAG+P++ A+ + + + + S Sbjct: 267 RAQMSRFSRTFALMIRAGVPLNQAIQMSAEALGNRFLE-----NRLIEMKNGIESGNSIT 321 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G + L +S K +E + Sbjct: 322 STATDSGVFTPLVLQMIAVGEETGQVDNLLLEVSDFYDREVEYDLKTLTARIEPLLLLVV 381 Query: 133 IGSLPFCVSTLVYFT 147 + + Sbjct: 382 AVMVLILALGIFLPM 396 >gi|86144313|ref|ZP_01062645.1| Flp pilus assembly protein TadC [Vibrio sp. MED222] gi|85837212|gb|EAQ55324.1| Flp pilus assembly protein TadC [Vibrio sp. MED222] Length = 288 Score = 67.8 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 58/158 (36%), Gaps = 4/158 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIET 58 + K P LD++ V G+ + ++ + + D + RV Sbjct: 133 VSARGKSNIKHISSRLPFLLDLMNVCVHTGMTIESSLEYLAKELHSVDSNLAHVVRVTVE 192 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + L +++ +P E F + Q G ++ L L+ +R+ M + Sbjct: 193 RSRLVGLEKALEEFYELVPTSESQSFVMTMVQSLQFGSSVGPVLVTLASDIRELNMMDLE 252 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 + M AK S +I + + L+ PG M L+ Sbjct: 253 ERIGKMGAKMSIPLIAFIMVPIIILIAA--PGIMRALM 288 >gi|330828058|ref|YP_004391010.1| type IV pilus assembly protein tapC [Aeromonas veronii B565] gi|328803194|gb|AEB48393.1| Type IV pilus assembly protein tapC [Aeromonas veronii B565] Length = 413 Score = 67.8 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 15/158 (9%), Positives = 42/158 (26%), Gaps = 6/158 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQ 79 I + AG+P+ ++ +I E ++ G +SE++ R Sbjct: 80 RQITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEALRRHPL----- 134 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + G L ++ + +K+K++ + + Sbjct: 135 YFDDLYCDLVEAGEQSGALETIYDRIATYREKSEALKSKIKKAMFYPTMVILVAIVVTSI 194 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + V + + + + Sbjct: 195 LLLFVIPQFEDIFKSFGAELPVFTQFVIGISRFMQNWW 232 Score = 34.7 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 17/135 (12%), Positives = 38/135 (28%), Gaps = 5/135 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + AG+P+ DA+ G S + V I + + R V Sbjct: 277 AAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIRNEVVAGMQINVAMRTV 336 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 P + + + G + + L+ ++ I + +E + Sbjct: 337 DLFP-----DMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLG 391 Query: 134 GSLPFCVSTLVYFTS 148 + V + Sbjct: 392 VLVGGMVIAMYLPIF 406 >gi|262374021|ref|ZP_06067298.1| general secretion pathway protein F [Acinetobacter junii SH205] gi|262311032|gb|EEY92119.1| general secretion pathway protein F [Acinetobacter junii SH205] Length = 408 Score = 67.8 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 18/177 (10%), Positives = 49/177 (27%), Gaps = 15/177 (8%) Query: 1 MKHLIKKRTAKFL---------DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51 +K++ +KR D + ++AG+P+ ++ +P E Sbjct: 47 IKNIREKRKNILEGFMKKKVTTLDITVFTRQLATMMKAGVPLVQGFEIVAEGLENPSMRE 106 Query: 52 FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 + G + + ++ + + + + G L L ++ Sbjct: 107 VVLGLKSEVEGGNTFAGALRKYPQ-----YFDNLFCSLVESGEQSGALETMLDRVAVYKE 161 Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 + +K K++ + + + V D + V Sbjct: 162 KSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFTSFGADLPAFTQMVV 218 Score = 38.2 bits (87), Expect = 0.60, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 38/128 (29%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + + AG+P+ DA+ G +++ V E I + R+ P Sbjct: 280 RTLATTFAAGVPLIDALTSTAGATNNVVYEEAVLKIREDVATGQQLQFAMRVSNRFP--- 336 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + + G L L ++ + + ME A + + V Sbjct: 337 --AMAIQMVAIGEESGALDSMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLV 394 Query: 141 STLVYFTS 148 + Sbjct: 395 IAMYLPIF 402 >gi|94501408|ref|ZP_01307928.1| Type II secretory pathway, component PulF [Oceanobacter sp. RED65] gi|94426521|gb|EAT11509.1| Type II secretory pathway, component PulF [Oceanobacter sp. RED65] Length = 408 Score = 67.8 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 18/163 (11%), Positives = 54/163 (33%), Gaps = 7/163 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + ++G+P+ + ++ +P ++ V + G + + + ++ Sbjct: 74 FMRQLATMAKSGVPLMQGLEIVADGLENPAMQKVVLSVKDEVSAGNDFASCLKKHPQH-- 131 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L + L ++ + +K KV + I + Sbjct: 132 ---FDSLTCALIESGEQSGALEQMLDRVALYKEKSEALKQKVSKALKYPIVTLIIAAIVT 188 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA-FMLIGIMVM 179 + V T + L D + V + +M +++ Sbjct: 189 VILLVKVVPTFESMFSSLGGDLPAPTQMVVNISEWMQANYLIL 231 Score = 40.9 bits (94), Expect = 0.093, Method: Composition-based stats. Identities = 14/128 (10%), Positives = 37/128 (28%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 ++ + AG+P+ DA+ + S + V + I + + R Sbjct: 280 RVLSTTFAAGVPLVDALESVAEASGNVVYRDAILRIRDDVSTGTQMNASIRA-----TGV 334 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + G L L ++ + + +E A++ + + Sbjct: 335 FPNMVAQMVAIGEESGALDAMLEKVASYYEEEVDNLVDGLTAMIEPIVMAFLGVVVGGLL 394 Query: 141 STLVYFTS 148 + Sbjct: 395 IAMYLPIF 402 >gi|332969022|gb|EGK08062.1| type IV pilin biogenesis protein PilC [Kingella kingae ATCC 23330] Length = 422 Score = 67.8 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 25/174 (14%), Positives = 64/174 (36%), Gaps = 8/174 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71 D + ++AGLP+ A ++ ++ + + + G +L +S ++ Sbjct: 81 SADIAVFTRQLSTMMKAGLPLMQAFDIVAKGHANASMTAMLMEIRNDVEQGEALGDSFAK 140 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + F + + GG L L L+ + +K KV++ + Sbjct: 141 HPK-----YFDKFYCNLVAAGEAGGVLEGLLDKLATYKEKTEAIKKKVKSALTYPISIVV 195 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVMRLMI 183 + +L + V + + + P ++ ++ AF+ G +++ +I Sbjct: 196 VAVALVIVMMMFVLPEFGKVYSSMGAELPPLTQFMMNISNAFVEFGWLIILALI 249 >gi|84385679|ref|ZP_00988710.1| hypothetical Flp pilus assembly protein TadC [Vibrio splendidus 12B01] gi|84379659|gb|EAP96511.1| hypothetical Flp pilus assembly protein TadC [Vibrio splendidus 12B01] Length = 280 Score = 67.8 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 61/148 (41%), Gaps = 2/148 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 ++ K ++ P LD++ V+ G+ + A+ + + ++ ++ Sbjct: 123 LQMRRKMLISRTSAQLPYLLDMMSVCVQTGMTIEAALVYLGKELAEFDSDLCYQIKRTSD 182 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L ++++ + +P V F I Q G +++ L++L+ +R + + + Sbjct: 183 SAKIHGLEKALNDLSERIPTPPVRSFVLTIIQNLQYGTSVASVLSDLAEDMRKVQILTVE 242 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYF 146 + + AK S +I + F + L+ Sbjct: 243 EKVGKLSAKMSVPLILFIMFPIVILILA 270 >gi|300856045|ref|YP_003781029.1| putative type II secretion system protein [Clostridium ljungdahlii DSM 13528] gi|300436160|gb|ADK15927.1| putative type II secretion system protein [Clostridium ljungdahlii DSM 13528] Length = 306 Score = 67.8 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 62/132 (46%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I+ R K L D P LD+I SV AGL A+A ++ + EF + ++ Sbjct: 148 LSRRIQNRKNKILKDLPYTLDLITVSVEAGLSFDGAIARVISNIRGELCDEFAKSLKEIT 207 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ ++ M ++E+S F + + +LG +LS+ L S LR+ + ++ + Sbjct: 208 MGIERKAALKNMSERCDVKELSMFISSLIQADELGVSLSKVLRIESANLREHRRQVSREK 267 Query: 121 ALSMEAKASAWI 132 A+ K + Sbjct: 268 AMKAPIKMLFPL 279 >gi|260463899|ref|ZP_05812095.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] gi|259030274|gb|EEW31554.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] Length = 321 Score = 67.8 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 69/157 (43%), Gaps = 4/157 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + +++ ++ + FP+ +D+++ AG+ + + + + + + + V Sbjct: 163 LSQKTREKMREYRNGFPDFMDLMIVCSDAGMSMEAGIERVSKELARTYPALSQNLQLVSL 222 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G SL +++ + + L EV F+T++ +LG +LS AL S +R ++ A Sbjct: 223 ELRAGRSLDDALKALADRLSLDEVRSFATLLQQSKELGTSLSGALRVFSDEMRHKRMSLA 282 Query: 118 KVQALSMEAKASAWII-GSLPFCVSTLVYFTSPGYMN 153 + +A ++ AK S + LP + + Sbjct: 283 EEKAHALPAKMSIPVTVCILPVVLMIAIIPIIVKMTG 319 >gi|188990484|ref|YP_001902494.1| pilC, fimbrial assembly protein [Xanthomonas campestris pv. campestris str. B100] gi|167732244|emb|CAP50436.1| pilC, fimbrial assembly protein [Xanthomonas campestris pv. campestris] Length = 419 Score = 67.8 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 21/173 (12%), Positives = 54/173 (31%), Gaps = 6/173 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + +++G+P+ ++ +I + ++ ++ G SL ESIS Sbjct: 79 KDIAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLYESISAH 138 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L ++ + + +K K++ + Sbjct: 139 PVQ-----FDELYRNLVRAGEGAGVLETVLDTVASYKENIEALKGKIKKAMFYPAMVVAV 193 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + V + L V A+ ++ + L++ Sbjct: 194 AIIVSAILLIFVVPQFEEVFKGFGAELPAFTQLLVNASRFMVSYWWLMLVVAV 246 Score = 38.6 bits (88), Expect = 0.40, Method: Composition-based stats. Identities = 15/137 (10%), Positives = 48/137 (35%), Gaps = 7/137 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISR 71 + +AG+P+ +A+ ++ G + + + E R+ + +G ++ ++ + Sbjct: 282 NSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEEAVFRMRDDVSVGYPVNMAMKQ 341 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + ++ + G L L ++ + N + +E + Sbjct: 342 VNLFPHM------VIQMTAIGEEAGALDAMLFKVAEYFEEEVNNAVDALSSLLEPLIMVF 395 Query: 132 IIGSLPFCVSTLVYFTS 148 I + V + Sbjct: 396 IGTIVGGMVIGMYLPIF 412 >gi|295395216|ref|ZP_06805424.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC 49030] gi|294971978|gb|EFG47845.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC 49030] Length = 312 Score = 67.8 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 65/150 (43%), Gaps = 2/150 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KKR + L +FP +++ S+ AG DA+ + ++ + E R + Sbjct: 157 LTQAVKKREERILAEFPTIAELLALSITAGEGTVDALNRVCHTATGELSDELRIALAQAR 216 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL +++ M R +Q + F +++ G LSE L + +R+ + K+ Sbjct: 217 TGTSLVDALDAMARRTNIQSLIQFVDGLAIALSRGTPLSEVLRAQAADVREEG--RRKLM 274 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150 LS + + + L T+++ P Sbjct: 275 ELSGKKEVGMLVPVVLFVLPITVLFAVYPS 304 >gi|153871817|ref|ZP_02000889.1| Type 4 fimbrial assembly protein pilC [Beggiatoa sp. PS] gi|152071715|gb|EDN69109.1| Type 4 fimbrial assembly protein pilC [Beggiatoa sp. PS] Length = 406 Score = 67.8 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 19/189 (10%), Positives = 60/189 (31%), Gaps = 16/189 (8%) Query: 1 MKHLIKKRTAKFLDDF----------PNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVR 49 + +KK+T FL+ + + +G+ + ++ ++ G + + Sbjct: 44 LPSKVKKKTTSFLEALNSKPVEPGDIALFARQMATMMSSGVALLESFDLVAGGHENPNFQ 103 Query: 50 SEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL 109 + + G +L++ + R + + + G L L L+ Sbjct: 104 KLVMDIKGSVEAGGTLADGLRRHPDH-----FDSLFCNLVYAGEQAGILESLLTKLADYK 158 Query: 110 RDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 + MK +++ + + G + + V + + + + Sbjct: 159 EKSEGMKKRIKGALSYPMSIMVVAGIVSTVLLVYVVPVFADMFSSFGGELPALTQMVMRM 218 Query: 170 AFMLIGIMV 178 + ++G + Sbjct: 219 SDFMVGNWM 227 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/136 (11%), Positives = 44/136 (32%), Gaps = 7/136 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73 + AG P+ +A+ + G + V E ++ G +L++S+ Sbjct: 272 AIARFTRTLATMFAAGTPLVEAMDSVAGACGNIVYYEATMKIKAEVETGETLADSMRESG 331 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 ++ + G++ + L ++ + + + + ME A++ Sbjct: 332 ------VFPNMCVQMTQIGEQAGSIDKMLNKVADYYEEEVDALVESLSSMMEPMIMAFLG 385 Query: 134 GSLPFCVSTLVYFTSP 149 + V + Sbjct: 386 VVIGGLVLAMYMPIFA 401 >gi|170734860|ref|YP_001773974.1| type II secretion system protein [Burkholderia cenocepacia MC0-3] gi|169820898|gb|ACA95479.1| type II secretion system protein [Burkholderia cenocepacia MC0-3] Length = 324 Score = 67.8 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 4/167 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + +K R K +DFP+ALD++ V AGL + A+ + + S+ V SE ++ Sbjct: 157 LSQRVKVRQRKIFEDFPDALDLLTVCVEAGLGLDAALMKVSEELRFRSEVVASELDLLLL 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + ++++ F ++ + G ++SE+L LS +LR R+ M+A Sbjct: 217 EMRSGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESLRVLSDMLRTRRRMRA 276 Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 + +A + I P + L+ VL+ G Sbjct: 277 EERAAKIALKLLFPLIFCIFPALMMVLLGPAMIHVYRVLLPTFVGVA 323 >gi|114561295|ref|YP_748808.1| general secretion pathway protein F [Shewanella frigidimarina NCIMB 400] gi|114332588|gb|ABI69970.1| general secretion pathway protein F [Shewanella frigidimarina NCIMB 400] Length = 410 Score = 67.8 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 69/185 (37%), Gaps = 10/185 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + +L KKR + + + I V AGLP+ +A+ + QS D + S V Sbjct: 59 LANLFKKRIS--VAELALITRQIATLVAAGLPIEEALKAVGQQSEKDRLGSMIMAVRSRV 116 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SL++S++ + + G+L L L+ R+ +K+K+ Sbjct: 117 VEGYSLADSMAEFP-----HVFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKL 171 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML--IGIM 177 + + + + V G + + G + A+ + G++ Sbjct: 172 TQAMIYPIVLTVVAIGVIAVLLAAVVPKVVGQFEHMGQELPGTTQFLILASDFVQHWGVV 231 Query: 178 VMRLM 182 V+ L+ Sbjct: 232 VVLLI 236 >gi|240102253|ref|YP_002958561.1| type II secretion system protein F [Thermococcus gammatolerans EJ3] gi|239909806|gb|ACS32697.1| Bacterial type II secretion system protein F [Thermococcus gammatolerans EJ3] Length = 303 Score = 67.8 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 72/182 (39%), Gaps = 6/182 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + KR + P+A + S+RAG+ S+A+ + + EF+RV+ G Sbjct: 86 WRVSKRIEEMEKHLPDAFFYLASSLRAGISFSEALEDLTTAKFGALTDEFKRVVGEIRKG 145 Query: 63 LSLSESISRMV-RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 S E++ M R V +I + G +S+ L ++ +R+ +K + +A Sbjct: 146 RSTVEALKVMAVRNRKSPVVYRSLMIIIEALERGAPMSDVLVYVANDVREILRIKQERKA 205 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + I V + T M +++ P + V +G +V++ Sbjct: 206 STGMQMMFFIITSG---FVGPAIIGTVGKLMGIMVQGPAKAQIPTVLNIL--LGFVVIQA 260 Query: 182 MI 183 ++ Sbjct: 261 IV 262 >gi|56460009|ref|YP_155290.1| Flp pilus assembly protein TadC [Idiomarina loihiensis L2TR] gi|56179019|gb|AAV81741.1| Flp pilus assembly protein TadC [Idiomarina loihiensis L2TR] Length = 237 Score = 67.8 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 59/145 (40%), Gaps = 1/145 (0%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQH 60 + L K + P+ D+I + +G+P+ A+ + SD + E ++ Sbjct: 80 RQLALKNNKAIVRQLPDFCDLISMMIASGIPLISALEKVSASCSDLLLAREITSMLSRLR 139 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S ++S+ + +++ +S+++ Q G +L+++L + LR A+ + Sbjct: 140 RGTSFAQSMYELSERYDAKQIHEWSSMLIKGYQQGTSLTKSLRFYANQLRQDLLNSAEKR 199 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145 A K ++ ++ Sbjct: 200 AQEAPVKLLFPLVTCFFPVNFLVIL 224 >gi|239980169|ref|ZP_04702693.1| integral membrane protein [Streptomyces albus J1074] Length = 338 Score = 67.8 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 19/174 (10%), Positives = 62/174 (35%), Gaps = 2/174 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + + + ++ + + A+ ++ +R +++ L E++ + Sbjct: 124 EALASWTESLRDTIAGAVGLEQAIPASARAAAPVLRPHLDALVDRLRSRTPLPEALQHLA 183 Query: 74 RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + ++ G L + L L++ R+ +M+ +V A + S I Sbjct: 184 DEIDDASADIIVAALMLNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQRSSTRRSVQI 243 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + ++ + + ++ P G +L +G +R + + Sbjct: 244 VVAVSVAFVLGLAVFNRDFVAP-YGTPVGQAVLACVCGLFALGFWWLRKLSTIE 296 >gi|149198877|ref|ZP_01875919.1| type IV pilus biogenesis protein PilC [Lentisphaera araneosa HTCC2155] gi|149138075|gb|EDM26486.1| type IV pilus biogenesis protein PilC [Lentisphaera araneosa HTCC2155] Length = 414 Score = 67.8 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 21/171 (12%), Positives = 59/171 (34%), Gaps = 9/171 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIETQHLGLSLSESIS 70 + + + AGLP+ A+ + Q+ +R ++ ++ G S++++ Sbjct: 72 SKNLTVFTRQLATLLGAGLPMVRAIRTLAKQAKKDVILRQILTQIADSIEGGNGFSDALA 131 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + + + G + L L+ + + +K KV+ M + Sbjct: 132 SQPKS-----FNKLYVNMIRAGEASGAMEAVLNRLAEFMEKSEKLKRKVKGALMYPCSVL 186 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVM 179 +I + + + T + + L+ G V + + + + Sbjct: 187 FIAVCITWGLMTFIVPKFKEIFDDLLAGEPLPGLTEFVVQLSTFINTMWYI 237 Score = 37.8 bits (86), Expect = 0.68, Method: Composition-based stats. Identities = 13/132 (9%), Positives = 46/132 (34%), Gaps = 7/132 (5%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRY 75 ++ + +G+ + +A+ ++ +S+ V + V ++ G S+S+ + + Sbjct: 282 AQFCRVLSTLLGSGVAILNALEIVRNTTSNAVVAKAVQSVADSVKEGESVSKPLDQSG-- 339 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + G + E + ++ I + ++ +E ++ Sbjct: 340 ----IFPLMMISMVEVGEETGAMPEMMLRVADIYEEEVDVAVDGLTSLIEPIMIVFLAVV 395 Query: 136 LPFCVSTLVYFT 147 + V + Sbjct: 396 VGGIVIAMFMPM 407 >gi|88858666|ref|ZP_01133307.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshG (pilus type IV) [Pseudoalteromonas tunicata D2] gi|88818892|gb|EAR28706.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshG (pilus type IV) [Pseudoalteromonas tunicata D2] Length = 411 Score = 67.8 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 18/170 (10%), Positives = 60/170 (35%), Gaps = 6/170 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRM 72 D+ + ++AG+P+ A+ + ++ +E + + G +LS +++ Sbjct: 70 DELIIFCRQMYSLLKAGIPIIRAIVGLAETTTHKRFAEALTDLTKQLEQGRNLSSAMAS- 128 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + I V + G L +A L+ + + ++++ Sbjct: 129 ----HKKIFNRLMVSIVVVGESTGRLEDAFLQLATYFEREQETRKRIKSAMRYPTFVILA 184 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + F ++ V T + + + + + + ++ ++ Sbjct: 185 LVAAMFILNIFVIPTFANMFSKFNAELPLMTRILIGTSGFFVNYWLLLII 234 Score = 34.3 bits (77), Expect = 8.0, Method: Composition-based stats. Identities = 9/127 (7%), Positives = 35/127 (27%), Gaps = 5/127 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 +R+G+P++ ++++ + + + + + S + Sbjct: 280 RSFAMILRSGVPMTTGLSLVAEAVDNTFMEQKVL-----EMRRGIEKGESLLRVSKQSGL 334 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + + G + E L + + K +E + + + Sbjct: 335 FTQLVLQMVAVGEETGQVDELLQESAEFYEREVDFDLKSLTAKIEPILISAVAVMVLVLA 394 Query: 141 STLVYFT 147 + Sbjct: 395 LGIFTPM 401 >gi|54310532|ref|YP_131552.1| putative general secretion pathway protein F [Photobacterium profundum SS9] gi|46914975|emb|CAG21750.1| putative general secretion pathway protein F [Photobacterium profundum SS9] Length = 410 Score = 67.5 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 60/172 (34%), Gaps = 11/172 (6%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66 R ++ + V+AG+P+ + + + Q+ +R+ V G +LS Sbjct: 64 RRGISTNELSLVTRQLATLVQAGMPLEECLKAVGEQNEKPRLRNMLLAVRSRVVEGYTLS 123 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S++ + + G+L L L+ +R+ M++K+Q + Sbjct: 124 DSMAEYP-----HIFDQLFRAMVAAGEKSGHLDTVLNRLADYTENRQKMRSKLQQAMIYP 178 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + V+ L+ P ++ + G L + + V Sbjct: 179 T---MLTLVAVAVVAFLLATVVPKIVDQFVQ--MGQKLPTITEVLLAASNFV 225 >gi|149174468|ref|ZP_01853094.1| General secretory pathway protein F [Planctomyces maris DSM 8797] gi|148846578|gb|EDL60915.1| General secretory pathway protein F [Planctomyces maris DSM 8797] Length = 401 Score = 67.5 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 22/173 (12%), Positives = 55/173 (31%), Gaps = 9/173 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGL 63 I ++ + + + V AG+PV+ A+ I Q +P + + ++ G Sbjct: 54 IAQKKRVPRKEIIYFTNQMAIMVDAGVPVATALEGISKQIENPVLAEILAHIQKSVESGS 113 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S +++ R + S+ G + + L ++ + + +V+ Sbjct: 114 DFSAALADFPRQ-----FDRTYVNLIKASEASGTMPQMLNRIAAQAEEEQETIQQVKGAL 168 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 M + + L+ + P M + + + I Sbjct: 169 MYPAIMLVMCVGI---CIFLLTYVFPKLMPMFASRGAAIPAPTKIMIMVSTAI 218 Score = 38.6 bits (88), Expect = 0.40, Method: Composition-based stats. Identities = 15/129 (11%), Positives = 35/129 (27%), Gaps = 5/129 (3%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + +V AG+P+ +A+ + G + + + I Sbjct: 272 IRTLATTVNAGVPMLEALELSSGVTDNVHFRQSWLEISELVTTG-----KQIHEAMEGKT 326 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + G L L LS + K +E + + F Sbjct: 327 LFPPTMQQMIASGESTGRLGMVLNKLSDYFDREVKIAIKSATTLIEPVMVVCMGSIIGFI 386 Query: 140 VSTLVYFTS 148 +++ Sbjct: 387 ALSMLLPIF 395 >gi|192361623|ref|YP_001983784.1| general secretion pathway protein F [Cellvibrio japonicus Ueda107] gi|190687788|gb|ACE85466.1| General secretion pathway protein F [Cellvibrio japonicus Ueda107] Length = 411 Score = 67.5 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 26/186 (13%), Positives = 58/186 (31%), Gaps = 13/186 (6%) Query: 6 KKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++R K D + VR+GLP+ +A+ QS RV+ + Sbjct: 63 RRRAGKLSVRDLSLITRQLASLVRSGLPLDEALQATAKQSQKANVK---RVVLQVRTRV- 118 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L + + + G LS L L+ + + ++ +++ + Sbjct: 119 LEGFSLAQAMGDNPGAFNDMYRALVRAGEGSGYLSPVLERLADYTQTSQQLQQRIKMAMI 178 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA-----FMLIGIMVM 179 + + L+ + P + + R +L A G+++ Sbjct: 179 YPVVMLMVSIG---VIVALMVWVVPKLVKIFEQGGRELPMLTQALIACSEFLQNYGVVLF 235 Query: 180 RLMINF 185 +I Sbjct: 236 IAIIAV 241 Score = 42.8 bits (99), Expect = 0.023, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 43/131 (32%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMP 77 + +G+P+ A+ + ++ V E V G SL+ ++ + P Sbjct: 280 FAATLSLLSASGVPLLQALNISGQVMTNKVMQEACDSVAAAVREGTSLNRAMENSGAFPP 339 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G L + L N +R M V +E ++ G++ Sbjct: 340 ------LLVQLVASGETNGTLPQQLDNAARDQERELEMMLGVAMGLLEPATIIFMGGAVC 393 Query: 138 FCVSTLVYFTS 148 V ++ Sbjct: 394 LIVLAILTPIF 404 >gi|312882149|ref|ZP_07741898.1| hypothetical protein VIBC2010_06159 [Vibrio caribbenthicus ATCC BAA-2122] gi|309370195|gb|EFP97698.1| hypothetical protein VIBC2010_06159 [Vibrio caribbenthicus ATCC BAA-2122] Length = 280 Score = 67.5 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 64/149 (42%), Gaps = 4/149 (2%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--TQHLGLSLSES 68 K P LD++ ++ G+ + ++ + + + + ++ L ++ Sbjct: 133 KISAQLPYLLDMMAVCIQTGMTIEASLVYLGEELEEFDKDLCYQIQRTSDSAKIHGLEKA 192 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 ++ +P V F I Q G ++++ L +LS +R + + + + + AK Sbjct: 193 LNDFADRVPTTAVRSFVLTIIQNLQYGTSVAQVLGDLSEDMRKVQILTVEEKVGKLSAKM 252 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 S +I + F + L+ +PG M ++IN Sbjct: 253 SLPLILLIMFPIVVLI--LAPGIMQMMIN 279 >gi|254523373|ref|ZP_05135428.1| fimbrial assembly protein [Stenotrophomonas sp. SKA14] gi|219720964|gb|EED39489.1| fimbrial assembly protein [Stenotrophomonas sp. SKA14] Length = 407 Score = 67.5 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 20/173 (11%), Positives = 54/173 (31%), Gaps = 6/173 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + +++G+P+ A+ +I G + ++ + G SL E++S+ Sbjct: 67 KDIAFFSRQMATMMKSGVPIVSALDIIGSGHKNPRMKKMVDSLRTDIEGGSSLYEAVSKH 126 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L ++ + + +K K++ + Sbjct: 127 PVQ-----FDELYRNLVKAGEGAGVLETVLDTVATYKENIEALKGKIRKAMFYPAMVLAV 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + V D + V + ++ + L++ Sbjct: 182 ALIVSGILLVWVVPQFEDVFKGFGADLPAFTQMIVNLSRFMVSWWWLILIVII 234 Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 15/136 (11%), Positives = 36/136 (26%), Gaps = 5/136 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + +AG+P+ +A+ ++ G + + V E + + Sbjct: 270 NSAIARFARTTAVTFKAGVPLVEALGIVAGATGNTVYEEAVLRMRDDVSVGYPVNVAMKQ 329 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P ++ + G L L ++ N + +E I Sbjct: 330 RNLFPH-----MVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPIIMVII 384 Query: 133 IGSLPFCVSTLVYFTS 148 + V + Sbjct: 385 GTIVGGMVIGMYLPIF 400 >gi|303239211|ref|ZP_07325740.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] gi|302593256|gb|EFL62975.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] Length = 404 Score = 67.5 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 60/179 (33%), Gaps = 6/179 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLS 66 + D ++AG+P++ + V+ Q+++ E + E G+SLS Sbjct: 58 KKKVTTKDLAIFNRQFAIVLQAGVPIASCMDVLKQQTTNQTLRECLNDIYENIQKGISLS 117 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 S+ + + ++ G L L++ ++ + AK+++ Sbjct: 118 NSMRK-----HEDIFPEIMICMVEAGEVSGQLDIVFERLAKQFENQNAINAKIRSALTYP 172 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 I ++ + V + G + + + +A + + L+ Sbjct: 173 IIVGVIAVAVIVVLMIFVVPSFVGILKDFNTPLPIYTKILIAVSNFFVNFWWAILIGAI 231 >gi|290958554|ref|YP_003489736.1| type II secretion system F protein [Streptomyces scabiei 87.22] gi|260648080|emb|CBG71188.1| putative type II secretion system F protein [Streptomyces scabiei 87.22] Length = 286 Score = 67.5 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 67/180 (37%), Gaps = 4/180 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++R + +A+ VRAG A++ S + V+ G Sbjct: 106 ARQRRGDAVLALCSAV---AGEVRAGRQPGAALSRAARD-SGGLGDAGAAVLAAARFGGD 161 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + +++ R + + + V G L+ L L LR ++ +A ++A Sbjct: 162 VPNALALAARQPGAEGLLGLAACWRVAVDRGAGLAAGLDRLEGALRAERDQRADLRAQLA 221 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A+++A ++ LP L ++VL++ P G L V A G+ ++ Sbjct: 222 GARSTAVMLAGLPVLGLLLGSALGADPLHVLLHSPAGLGCLFVGAVLEGAGLWWALRIVR 281 >gi|261252092|ref|ZP_05944665.1| flp pilus assembly protein TadC [Vibrio orientalis CIP 102891] gi|260935483|gb|EEX91472.1| flp pilus assembly protein TadC [Vibrio orientalis CIP 102891] Length = 314 Score = 67.5 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 74/164 (45%), Gaps = 7/164 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + ++ KR ++ P+ALD++V +GL + A+ + + S E V Sbjct: 154 LSMMVDKRQSRIRSGIPDALDLLVVCTESGLGFNAALRRVADELTISHPDFADELDTVCV 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ +S++ + +++ L E++ T+++ S++GG+LS+ L + RD++N + Sbjct: 214 KISAGVEMSDAFNDLIKRTGLSEIAGLVTMLAHASRIGGSLSQTLREYTEDYRDKRNQEI 273 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + A + K ++ + C + P + L G Sbjct: 274 EEIAAKIPTKMIFPLLIFIWPC--FFIVAIGPSML--LFTSTMG 313 >gi|91772317|ref|YP_565009.1| type II secretion system protein [Methanococcoides burtonii DSM 6242] gi|91711332|gb|ABE51259.1| type II secretion system protein F domain [Methanococcoides burtonii DSM 6242] Length = 328 Score = 67.5 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 59/152 (38%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + + K + PN L I RAGL + +V + + E R + + G Sbjct: 106 YRKARYINKVEEYLPNFLRDIAEMSRAGLTLPASVETVAKGEYGEMTKEIRMMDASLSWG 165 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +S +++ + M ++ +I+ ++ GG +S L +R + K ++ + + Sbjct: 166 ISFEDTLENFGKRMNTHLITRSVALITQANRAGGRVSFVLEAAARDASEIKTLERERRGN 225 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 +++ + V ++ M++ Sbjct: 226 MAVYVVISYMSFFVFIFVILMLATRFVPTMHM 257 >gi|304312709|ref|YP_003812307.1| Type IV fimbrial biogenesis membrane protein, involved in pilus assembly [gamma proteobacterium HdN1] gi|301798442|emb|CBL46667.1| Type IV fimbrial biogenesis membrane protein, involved in pilus assembly [gamma proteobacterium HdN1] Length = 398 Score = 67.5 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 19/164 (11%), Positives = 48/164 (29%), Gaps = 7/164 (4%) Query: 9 TAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLS 66 K D + ++AG+P+ + ++ + E + G SL+ Sbjct: 53 KKKITPLDISIFSRQLATMMKAGVPLVQSFDIVAEGLDNLSMKELVINIKNEVEGGNSLA 112 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + + + G L L ++ + +KAK++ Sbjct: 113 GALRKHPL-----YFDDLFCSLVDSGEQSGALETMLDRIATYKEKTEALKAKIKKAVKYP 167 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 A + + + V T N + + + + Sbjct: 168 IAVVVVAVIVTTILLLKVVPTFEELFNGFGAELPAFTQMVIGMS 211 Score = 39.7 bits (91), Expect = 0.17, Method: Composition-based stats. Identities = 19/165 (11%), Positives = 51/165 (30%), Gaps = 28/165 (16%) Query: 5 IKKRTAKFLDDFPNAL--------------------DIIVRSVRAGLPVSDAVAVIVGQS 44 K+R+ +F D +AL + + AG+P+ +A+ + G + Sbjct: 235 AKRRSQRFSDAL-DALSLKMPVVGNIIYQSTIARYARTLATTFAAGVPLVEALDSVAGAT 293 Query: 45 SDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALA 103 + + ++ E G ++ S+ + ++ + G+L L Sbjct: 294 GNVIYRNAVLKIKEEVSSGTQMNFSMKSTGL------FPSMAVQMTAIGEESGSLDAMLD 347 Query: 104 NLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 ++ + +E A + + + + Sbjct: 348 KVATHYEQEVDAAVDGLTSLLEPIIMAVLGVIVGGLIIAMYLPIF 392 >gi|291452023|ref|ZP_06591413.1| integral membrane protein [Streptomyces albus J1074] gi|291354972|gb|EFE81874.1| integral membrane protein [Streptomyces albus J1074] Length = 289 Score = 67.5 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 19/174 (10%), Positives = 62/174 (35%), Gaps = 2/174 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + + + ++ + + A+ ++ +R +++ L E++ + Sbjct: 75 EALASWTESLRDTIAGAVGLEQAIPASARAAAPVLRPHLDALVDRLRSRTPLPEALQHLA 134 Query: 74 RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + ++ G L + L L++ R+ +M+ +V A + S I Sbjct: 135 DEIDDASADIIVAALMLNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQRSSTRRSVQI 194 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + ++ + + ++ P G +L +G +R + + Sbjct: 195 VVAVSVAFVLGLAVFNRDFVAP-YGTPVGQAVLACVCGLFALGFWWLRKLSTIE 247 >gi|330501800|ref|YP_004378669.1| pilin biogenesis protein [Pseudomonas mendocina NK-01] gi|328916086|gb|AEB56917.1| pilin biogenesis protein [Pseudomonas mendocina NK-01] Length = 406 Score = 67.5 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 19/166 (11%), Positives = 48/166 (28%), Gaps = 6/166 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + ++AG+P+ + +I +R + + G S + S+ + Sbjct: 67 DIALFTRQMATMMKAGVPLLQSFDIIAEGFDNPNMRKLIDEIKQEVAAGNSFASSLRKKP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G L L ++ + +KAK++ A + Sbjct: 127 EF-----FDDLYCNLVDSGEQSGALETLLDRIATYKEKTEALKAKIKKAMTYPIAVIVVA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + V ++ V + L + Sbjct: 182 VIVTAILLIKVVPQFESVFEGFGAQLPAFTMVVVNLSRWLQEWWFL 227 Score = 40.9 bits (94), Expect = 0.080, Method: Composition-based stats. Identities = 17/131 (12%), Positives = 40/131 (30%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P+ DA+ + G + + V R+ G L+ S+ Sbjct: 275 FARTLATTFAAGVPLVDALDSVAGATGNVVFRNAVNRIKNDVSSGSQLNFSMRNTG---- 330 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++ + G+L E L + + ME + + + Sbjct: 331 --IFPTMAVQMTAIGEEAGSLDEMLDKTASYYEAEVDNAVDNLTTLMEPLIMSVLGVLVG 388 Query: 138 FCVSTLVYFTS 148 + + Sbjct: 389 GLIIAMYLPIF 399 >gi|218676254|ref|YP_002395073.1| putative Flp pilus assembly protein TadC [Vibrio splendidus LGP32] gi|218324522|emb|CAV26000.1| putative Flp pilus assembly protein TadC [Vibrio splendidus LGP32] Length = 288 Score = 67.5 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 60/158 (37%), Gaps = 4/158 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIET 58 + K P LD++ V G+ + ++ + + D + RV Sbjct: 133 VSARGKANIKHISSRLPFLLDLMNVCVHTGMTIESSLEYLAKELHSVDSNLAHVVRVTVE 192 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + L +++ +P E F + Q G ++ LA L+ +R+ M + Sbjct: 193 RSRLVGLEKALEEFYELVPTSESQSFVMTMVQSLQFGSSVGPVLATLATDIRELNMMDLE 252 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 + M AK S +I + + L+ PG + +L+ Sbjct: 253 ERIGKMGAKMSIPLIAFIMVPIVVLIAA--PGILRMLM 288 >gi|332991955|gb|AEF02010.1| type IV pilus biogenesis protein PilC [Alteromonas sp. SN2] Length = 402 Score = 67.5 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 20/182 (10%), Positives = 54/182 (29%), Gaps = 14/182 (7%) Query: 1 MKHLIKKRTAKFLD--------DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSE 51 ++ + K++ + F D I + AG+ + ++ +I + +R Sbjct: 42 VRKVKKQQKSLFSRGGQKITAADISVFSRQIATMLAAGVTLIQSLDMISQGHAKASMRKL 101 Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111 + G LS S+ + + + G L ++ Sbjct: 102 LGDITNEVRSGNPLSSSLRKHPE-----YFDDLYCDLVYTGEQSGALETIYDRIATYKEK 156 Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 + +K+K++ A + + + V + + L +A + Sbjct: 157 AEALKSKIKKAMFYPVAVVVVALIVTTILLVFVVPQFEEIFSSFGAELPAFTLFVLAISN 216 Query: 172 ML 173 + Sbjct: 217 FV 218 Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 39/130 (30%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + AG+P+ A+ G S + V + + + G + R P Sbjct: 272 FTRTLATTFAAGVPLIGALESAAGASGNAVFRDAIMFMRKEVAGGMPMHTSMRATNVFP- 330 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 T + + G++ L+ ++ I + +E A + + Sbjct: 331 ----DMVTQMVAIGEESGSVDSMLSKIATIYEAEVDDMVDGLTSLLEPMIMAVLGVVIGG 386 Query: 139 CVSTLVYFTS 148 + + Sbjct: 387 LIVAMYLPIF 396 >gi|4186119|emb|CAA10650.1| PilC protein [Pseudomonas stutzeri] Length = 405 Score = 67.5 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 18/164 (10%), Positives = 48/164 (29%), Gaps = 6/164 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + ++AG+P+ + +I +R + + G S + S+ + Sbjct: 67 DIALFTRQMATMMKAGVPLLQSFDIIGEGFDNPNMRKLVDDLKQEVAAGNSFASSLRKKP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G+L L ++ + +KAK++ A + Sbjct: 127 Q-----YFDDLYCNLVDSGEQSGSLETLLDRVATYKEKTEALKAKIKKAMNYPIAVVLVA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + + L+ + + L Sbjct: 182 VIVTAILLIQGGSAVQDVFANFGAELPAFTLMVIGLSEALQAWW 225 Score = 40.5 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 40/130 (30%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + AG+P+ DA+ + G + + V T + +S + Sbjct: 275 FARTLSTTFAAGVPLVDALDSVAGATGNVVFR-----SATNKIKSDVSSGMQLNFSMRTT 329 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + ++ + G L E L+ ++ D + ME A + + Sbjct: 330 GTFPSMAVQMTAIGEESGALDEMLSKVATFYEDEVDNMVDGLTALMEPMIMAVLGVLVGG 389 Query: 139 CVSTLVYFTS 148 + + Sbjct: 390 LIIAMYLPIF 399 >gi|73749037|ref|YP_308276.1| pilin biogenesis protein [Dehalococcoides sp. CBDB1] gi|73660753|emb|CAI83360.1| pilin biogenesis protein [Dehalococcoides sp. CBDB1] Length = 401 Score = 67.5 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 62/174 (35%), Gaps = 13/174 (7%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRM 72 + + + +G + ++ ++ Q+++ + E ++ G SLS ++S+ Sbjct: 62 REVILFSRQLALLLESGTDIVTSLELLQEQTTNKLFREIIGEIVNDIRGGSSLSLAMSKH 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P + + GG+L L NL+ ++ + KV++ A + Sbjct: 122 PKAFPPLYHR-----VIAAGEQGGSLEVVLRNLASFVQRNVETEKKVKSALTYPGVVAVV 176 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-------AFMLIGIMVM 179 + + T V + + + + + +IGI ++ Sbjct: 177 GILVLLLMVTFVLPAFTSLYSQMGTELPTPTRILIGLSDFFESWGLYVIGIFII 230 Score = 33.9 bits (76), Expect = 9.8, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 7/140 (5%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSE 67 L + A + +AGLP+ + + +++ + S V G LS Sbjct: 260 RILLLSELSRACQTMSLLFKAGLPLPEIMNQTTAAANNKLISNALADVQHDLIRGEGLSR 319 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +++ ++P+ + + G L + LA +S + + ++ Sbjct: 320 PMTKNPLFLPM------MVQMVSVGEETGKLDDTLATVSATYDTETDDRISAAIGMIQPV 373 Query: 128 ASAWIIGSLPFCVSTLVYFT 147 + I + F LV Sbjct: 374 MTIAIGLVVGFIAVALVSSM 393 >gi|197106493|ref|YP_002131870.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1] gi|196479913|gb|ACG79441.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1] Length = 300 Score = 67.5 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 71/159 (44%), Gaps = 4/159 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 +K R ++ D FP+ LD++V SV AGL + AV + + + R ++ Sbjct: 141 LKSRKATREREYADGFPDLLDLLVASVEAGLSLDAAVTRVTDELERRYPNLTVHLRFLVL 200 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ S + +++ +T++ ++G +L + L S+ +R ++ ++A Sbjct: 201 ELRAGRARKDAWSAFADRLAIEDARALATMLRQAEEMGTSLGDTLQVFSQDMRQKRMLRA 260 Query: 118 KVQA-LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A I+ P ++ L+ + + VL Sbjct: 261 EEKALALSAKLTVPLILFIFPSLLTALMLPAAVRMIKVL 299 >gi|119715365|ref|YP_922330.1| type II secretion system protein [Nocardioides sp. JS614] gi|119536026|gb|ABL80643.1| type II secretion system protein [Nocardioides sp. JS614] Length = 411 Score = 67.5 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 28/189 (14%), Positives = 57/189 (30%), Gaps = 20/189 (10%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLS 64 KKR D + AGL + A++++ Q +R R V + G S Sbjct: 66 KKRIKP--RDLAVFARQFATMIDAGLTMLRALSIMAEQVENPELRKVLRAVKQDVEAGHS 123 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 LS + + R P ++ + GG L A+ ++ +++K++A Sbjct: 124 LSSAFGKWPRVFPP-----LMISMAKAGEAGGFLDTAMRQIADNFEAEVKLRSKIKAALT 178 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN------------DPRGHMLLGVAAAFM 172 ++ + + V L ++ + A Sbjct: 179 YPTVVFFLAIIMCIALLIFVVPVFEKMFKDLGGELPLPTKILVMLSAAMKYVVPLGAVLT 238 Query: 173 LIGIMVMRL 181 + R Sbjct: 239 GALVWWWRR 247 Score = 40.5 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 15/137 (10%), Positives = 36/137 (26%), Gaps = 5/137 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + AG+P+ A+ ++ + V + S+ + S Sbjct: 276 ALARFARNFSTLLSAGVPILQALDIVSDTTGSVVIG-----RALAEVKESVRQGESVAGP 330 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + G + LA ++ + +E A++ G Sbjct: 331 LSHHDVFPPMVVQMIASGEESGAIDAMLAKIAEFYDAEVESMTEGLTALIEPLMIAFLGG 390 Query: 135 SLPFCVSTLVYFTSPGY 151 + + L Y Sbjct: 391 LVGSMIVALYMPMFKIY 407 >gi|256397694|ref|YP_003119258.1| type II secretion system protein [Catenulispora acidiphila DSM 44928] gi|256363920|gb|ACU77417.1| type II secretion system protein [Catenulispora acidiphila DSM 44928] Length = 291 Score = 67.5 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 20/178 (11%), Positives = 56/178 (31%), Gaps = 2/178 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + +++ ++ A + AV + + + E R + L+ Sbjct: 94 RELARTEAVATFTEMLRDTLSAASGIGQAVRSSCAAAPEAIAGEARGLARRIDDQQDLAA 153 Query: 68 SISRMVRYMPLQEVSFFSTVIS-VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + + +L+ L +L+ R + + QA ++ Sbjct: 154 ALVTFADELRDPTADIVVVCLVHAIRNSAQDLAGLLGSLAVTARTLAAQRKRAQAARVQV 213 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + S I+ + + ++ +++ G +L A G + + M Sbjct: 214 RTSVRIVTCVTAGMLAGLFVLDRSFLSP-YGSASGQFVLACGLALFAAGYVWLWRMAK 270 >gi|329895293|ref|ZP_08270935.1| Type IV fimbrial assembly protein PilC [gamma proteobacterium IMCC3088] gi|328922415|gb|EGG29758.1| Type IV fimbrial assembly protein PilC [gamma proteobacterium IMCC3088] Length = 403 Score = 67.5 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 15/166 (9%), Positives = 45/166 (27%), Gaps = 4/166 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D + ++AG+P+ + ++ +P I + Sbjct: 64 ADIALVTRQLATMMKAGVPLIQSFEIVADGIENPRMRSMVNSIRGDVAAG----NALAGA 119 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G L L ++ + +KAK++ A + Sbjct: 120 LGKHKDQFDELFCSLVNSGENSGTLETMLDRVATYKEKTEQLKAKIKKAMTYPIAVVIVA 179 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ + V ++ L + ++ ++ Sbjct: 180 LAVTSLLLIKVVPQFAETFQSFGSELPAFTLFVLNISYFAQDYYLI 225 Score = 38.6 bits (88), Expect = 0.46, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 41/131 (31%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P+ +A+ G + + V + R+ + G SL +I Sbjct: 273 FSRTLSTTFAAGVPLVEALESTAGATGNSVYKKAVLRIRDDVTGGSSLYAAIKSSGL--- 329 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G L E L ++ + + + ME A + + Sbjct: 330 ---FPNMLLQMVSIGEESGALDEMLDKVANHYEEAVDNAVDSLSSLMEPMIMAVLGVLVG 386 Query: 138 FCVSTLVYFTS 148 + + Sbjct: 387 GLMVAMYLPIF 397 >gi|326330147|ref|ZP_08196458.1| putative integral membrane protein [Nocardioidaceae bacterium Broad-1] gi|325951960|gb|EGD43989.1| putative integral membrane protein [Nocardioidaceae bacterium Broad-1] Length = 284 Score = 67.5 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 60/171 (35%), Gaps = 3/171 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + + G+ + A+ + + P+ E ++ +I Sbjct: 101 EAMQEWTRALSGVLTVGVGLEQALITTLRSTPKPIAGEVTNLVARLRSRWDTERAIRTFA 160 Query: 74 RYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G L+ L +L+ + + + +V+A + +A+A Sbjct: 161 DELDDATGDLVAAYLIRASRRRGAGLASVLEDLAVSVAEDVRARRRVEADRAKPRATARW 220 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + V + FT Y+ P G ++L + + ++ MR M Sbjct: 221 VTIISASVLVFLAFTG-SYVAP-YGTPLGQVVLALLLTAYVATLVWMRQMA 269 >gi|284045232|ref|YP_003395572.1| type II secretion system F domain protein [Conexibacter woesei DSM 14684] gi|283949453|gb|ADB52197.1| Type II secretion system F domain protein [Conexibacter woesei DSM 14684] Length = 275 Score = 67.5 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 51/119 (42%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 + + P+ LD++ ++ AGLP+ AV + +++ + E+R V LG+ ++ Sbjct: 132 EMEAELPDLLDLLRVALGAGLPLERAVGDVADRATGLLAREWRTVAVEIGLGMPRERALV 191 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + P V + ++ G L EALA +R R + + QA K Sbjct: 192 ALAERCPTPGVGVLVRTLERAARHGAPLGEALAAQAREARSTRARRLDEQAARAAPKIQ 250 >gi|170724975|ref|YP_001759001.1| type II secretion system protein [Shewanella woodyi ATCC 51908] gi|169810322|gb|ACA84906.1| type II secretion system protein [Shewanella woodyi ATCC 51908] Length = 281 Score = 67.5 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 64/156 (41%), Gaps = 4/156 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI--ET 58 + K K P LD++ V+ G+ V A+A + + + + Sbjct: 125 LAMRKKMLVKKTSRQLPYMLDMMSVCVQTGMTVEAALAYLAEELKAFDKDLCFHIKKTAD 184 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L +++ + +P EV FS + Q G +++ LA+L+ +R + + + Sbjct: 185 TSRITGLEKALLELSERIPTPEVRSFSLTLIQNIQYGTSIANVLADLAEDMRQMQVLAME 244 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + AK S +I + F + L+ +PG+M + Sbjct: 245 ESIGKLAAKMSVPLILFIMFPIVVLI--LAPGFMQL 278 >gi|4139238|gb|AAD05175.1| general secretory pathway protein F [Burkholderia pseudomallei 1026b] Length = 405 Score = 67.5 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 69/188 (36%), Gaps = 17/188 (9%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + + +R + + AGLP+ +A+AV+ Q+ D +R + Sbjct: 59 LGRKLSQREQAI------LTRQLASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEV 112 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SL+ ++++ R + + + G L L+ L+ + +R +K K+ Sbjct: 113 LGGHSLANALTQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLAHYIEERNALKQKI 167 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIM 177 I + V+ L+ + P +NV + + +L + A + Sbjct: 168 LLAFTYPAIVTVIAFGI---VTFLLSYVVPQVVNVFASTKQQLPVLTIVMMALSDFVRHW 224 Query: 178 VMRLMINF 185 ++I Sbjct: 225 WWAILIGI 232 Score = 34.3 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ S+ I G +LS +++ + + P Sbjct: 274 FASTLGILTAAGVPILRALQAAGETLSNRAMRGNIDDAIVRVREGSALSRALNNVKTFPP 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+++ L + + +E + G + Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAAECESRELERRTMFLTSLLEPLLILAMGGIVL 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 VIVLAVMLPI 397 >gi|150019029|ref|YP_001311283.1| type II secretion system protein [Clostridium beijerinckii NCIMB 8052] gi|149905494|gb|ABR36327.1| type II secretion system protein [Clostridium beijerinckii NCIMB 8052] Length = 400 Score = 67.5 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 15/175 (8%), Positives = 45/175 (25%), Gaps = 4/175 (2%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 L D + AG+P+ + ++ Q + + + I + Sbjct: 57 KKVKLKDLSVFCRQFYTMLNAGVPILTCLEILSSQIENQKLRQATKAINDDVAKGEV--- 113 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + GNL + + ++ + KV++ + Sbjct: 114 -LSDSMAKHKDIFPELLVSLVASGEASGNLEDIMLRMATHYEKENKITNKVKSALIYPTV 172 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + T V T ++ + + + +++ Sbjct: 173 LGIVSILAVAFILTYVMPTFTEIFEQSGTVLPWSTKFLLSLSSGIKNYWYIIIIV 227 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 46/134 (34%), Gaps = 7/134 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + + +GLP+ +A+ ++ + + + E ++ + G SL S+ Sbjct: 270 FTRTLSTLIASGLPLVEALKIVADVAGNKIAEIELLKIRDKVVRGESLYTSMRESG---- 325 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+L + L + + + + ME + + Sbjct: 326 --IFPEMLYSMVKIGEETGSLDDILNKTADFYDEELDSIIQSSVALMEPILIVVMGLIIG 383 Query: 138 FCVSTLVYFTSPGY 151 F V++++ Y Sbjct: 384 FMVASIMIPMFDSY 397 >gi|299538323|ref|ZP_07051606.1| type II secretion system protein [Lysinibacillus fusiformis ZC1] gi|298725910|gb|EFI66502.1| type II secretion system protein [Lysinibacillus fusiformis ZC1] Length = 401 Score = 67.5 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 64/165 (38%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRM 72 +F +RAG+PV +A ++ Q+ S P++ +V E G++ S++ + Sbjct: 62 QEFVIYCRQYATLIRAGVPVVEATHILGEQTRSKPLKRALMQVEEDIRNGMAFSDAAGKH 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + PL + + GN+ + L L+ L + N+K K+Q+ + + Sbjct: 122 PKVFPL-----LFVNMMRAGEATGNVDDTLDRLASTLEKQYNIKKKIQSAMTYPAILSLL 176 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + + T + + ++ V + LI Sbjct: 177 TLVVGMFLMVFIVPTFMDAFKEMNLEMPLITVIVVGISDWLIQFW 221 >gi|23016184|ref|ZP_00055943.1| COG2064: Flp pilus assembly protein TadC [Magnetospirillum magnetotacticum MS-1] Length = 319 Score = 67.5 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + ++KR FP+ALD+IV V AGL V A+ + + S + E Sbjct: 160 LANAVQKRQLALGRAFPDALDLIVICVDAGLSVETALGRVTEEMMNSSPEMAEEIGLTAA 219 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ L +V ST + + G +++AL LS+ R+ + A Sbjct: 220 ELAFLADRRQAWENFAGRTGLPQVKSLSTALIQSEKYGTPVAQALKVLSQENRESRMAAA 279 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + +A ++ AK + +I + ++ Sbjct: 280 EKKAAALPAKLTVPMIVFFLPVLFLMI 306 >gi|156975614|ref|YP_001446521.1| hypothetical protein VIBHAR_03347 [Vibrio harveyi ATCC BAA-1116] gi|156527208|gb|ABU72294.1| hypothetical protein VIBHAR_03347 [Vibrio harveyi ATCC BAA-1116] Length = 187 Score = 67.5 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 68/163 (41%), Gaps = 4/163 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 ++ + K + P LDI+ V+ + + + A + + + ++ + Sbjct: 25 LEMRKRMLVRKVSKNLPYVLDIMSVCVQTCMTIEASFAYLAQELKIFDKDLCYQINKTSE 84 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + +++ + +P E++ F I G +++ L++L+ +R K ++ + Sbjct: 85 AGKVHGIEKALHDLSVRLPAPEINSFVLTIIQNLHYGASVANVLSDLAEDMRRIKLLEIE 144 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + + AK S +I + F + + +PG++ + RG Sbjct: 145 EKMGKLSAKMSVPLILLIMFPIVIFI--LAPGFLQIDFTSFRG 185 >gi|307548792|dbj|BAJ19114.1| TadC [Aggregatibacter actinomycetemcomitans] gi|307548807|dbj|BAJ19128.1| TadC [Aggregatibacter actinomycetemcomitans] Length = 288 Score = 67.5 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 69/157 (43%), Gaps = 4/157 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 + ++K + K ++D +D++ +V+ G+ + A+ + ++ Sbjct: 130 IGSILKAKIKKIMNDLAGFIDLVAVNVQTGISIEAALKQVATDFKTLNPDLTYVMLRIIR 189 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + +S+++ + +P E+ F TV+ G ++ L LS +R+ + + + Sbjct: 190 KSEITGMSQALQDLSVSLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSTDIREIQLLAIE 249 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + ++ AK S +I + F + L+ +PG M V Sbjct: 250 EKLGTLSAKMSIPLILFIMFPIIILI--LAPGVMRVF 284 >gi|288817624|ref|YP_003431971.1| fimbrial assembly protein [Hydrogenobacter thermophilus TK-6] gi|288787023|dbj|BAI68770.1| fimbrial assembly protein [Hydrogenobacter thermophilus TK-6] gi|308751222|gb|ADO44705.1| Type II secretion system F domain protein [Hydrogenobacter thermophilus TK-6] Length = 407 Score = 67.5 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 64/175 (36%), Gaps = 13/175 (7%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 D + + AG+ + DA+ ++ Q + + ++V + G++LS +++R Sbjct: 65 DRDISIFCRQLGTMINAGVNIIDAINILAEQLPNKMLSDASKQVAKMVSEGMNLSAAMNR 124 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P ++ + GNL AL + +K+K+++ S Sbjct: 125 FPKVFP-----ELVVNLAKVGEETGNLDVALIRAAEYYEKMAMIKSKIKSASFYPIFVVV 179 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-------AFMLIGIMVM 179 I + + + T L + + V A +IG++++ Sbjct: 180 IATIIVTGILYYLVPTFAQMYESLGGELPLPTQMLVNASNALRNNLLTIIGVILL 234 Score = 41.3 bits (95), Expect = 0.068, Method: Composition-based stats. Identities = 15/137 (10%), Positives = 33/137 (24%), Gaps = 5/137 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 + +G+ + A + + + V E + E Sbjct: 268 LKSSMAKFARTMATLFASGVALERAFDIAGQVTGNLVIKESVE-----RAKKRVIEGKPM 322 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + G L E L ++R D + + +E + Sbjct: 323 HASLEETGIFPKLVIAMVRVGEDTGRLDEMLDTIARFYEDEFDRAVEGMIKLIEPALMVF 382 Query: 132 IIGSLPFCVSTLVYFTS 148 I G + + L Sbjct: 383 IGGVVGMILVALYLPIF 399 >gi|107028240|ref|YP_625335.1| type II secretion system protein [Burkholderia cenocepacia AU 1054] gi|116687151|ref|YP_840398.1| type II secretion system protein [Burkholderia cenocepacia HI2424] gi|105897404|gb|ABF80362.1| type II secretion system protein [Burkholderia cenocepacia AU 1054] gi|116652866|gb|ABK13505.1| type II secretion system protein [Burkholderia cenocepacia HI2424] Length = 324 Score = 67.5 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 4/167 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + +K R K +DFP+ALD++ V AGL + A+ + + S+ V SE ++ Sbjct: 157 LSQRVKVRQRKIFEDFPDALDLLTVCVEAGLGLDAALMKVSEELRFRSEVVASELDLLLL 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + ++++ F ++ + G ++SE+L LS +LR R+ M+A Sbjct: 217 EMRSGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESLRVLSDMLRTRRRMRA 276 Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 + +A + I P + L+ VL+ G Sbjct: 277 EERAAKIALKLLFPLIFCIFPALMMVLLGPAMIHVYRVLLPTFVGVA 323 >gi|13471027|ref|NP_102596.1| integral membrane protein [Mesorhizobium loti MAFF303099] gi|14021771|dbj|BAB48382.1| probable integral membrane protein [Mesorhizobium loti MAFF303099] Length = 305 Score = 67.5 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 70/157 (44%), Gaps = 4/157 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + ++++ ++ + FP+ +D+++ AG+ + + + + + + + V Sbjct: 147 LTQQVREKMREYRNGFPDFMDLMIVCSDAGMSMEAGIERVSKELAKTYPALSQNLQLVSL 206 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G SL +++ + + L EV F+T++ +LG +LS AL S +R ++ A Sbjct: 207 ELRAGRSLDDALKALADRLSLDEVRSFATLLQQSKELGTSLSGALRVFSDEMRHKRMSLA 266 Query: 118 KVQALSMEAKASAWII-GSLPFCVSTLVYFTSPGYMN 153 + +A ++ AK S + LP + + Sbjct: 267 EEKAHALPAKMSIPVTVCILPVVLMIAIIPIIVKMTG 303 >gi|149188858|ref|ZP_01867148.1| hypothetical Flp pilus assembly protein TadC [Vibrio shilonii AK1] gi|148837278|gb|EDL54225.1| hypothetical Flp pilus assembly protein TadC [Vibrio shilonii AK1] Length = 282 Score = 67.5 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 66/156 (42%), Gaps = 4/156 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 ++ K K P LD++ V+ G+ + A+ + + ++ +V Sbjct: 123 LQLRRKVLIGKTSAQLPYLLDMMSVCVQTGMTIEAALIYLGKELAEFDSDLCYQVKRTSD 182 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L ++++ + +P V F I Q G ++++ L++L+ +R + + + Sbjct: 183 SAKIHGLEKALNDLSDRIPTPAVRSFVLTIIQNLQYGTSVAQVLSDLAEDMRKVQILAVE 242 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + AK S +I + F + L+ +PG M + Sbjct: 243 EKVGKLSAKMSIPLILFIMFPIVILI--LAPGIMQM 276 >gi|147669803|ref|YP_001214621.1| type II secretion system protein [Dehalococcoides sp. BAV1] gi|146270751|gb|ABQ17743.1| type II secretion system protein [Dehalococcoides sp. BAV1] Length = 401 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 62/174 (35%), Gaps = 13/174 (7%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRM 72 + + + +G + ++ ++ Q+++ + E ++ G SLS ++S+ Sbjct: 62 REVILFSRQLALLLESGTDIVTSLELLQEQTTNKLFREIIGEIVNDIRGGSSLSLAMSKH 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P + + GG+L L NL+ ++ + KV++ A + Sbjct: 122 PKAFPPLYHR-----VIAAGEQGGSLEVVLRNLASFVQRNVETEKKVKSALTYPGVVAVV 176 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-------AFMLIGIMVM 179 + + T V + + + + + +IGI ++ Sbjct: 177 GILVLLLMVTFVLPAFTSLYSQMGTELPTPTRILIGLSDFFESWGLYVIGIFII 230 Score = 34.3 bits (77), Expect = 7.5, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 7/140 (5%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSE 67 L + A + +AGLP+ + + +++ + S V G LS Sbjct: 260 RILLLSELSRACQTMSLLFKAGLPLPEIMNQATAAANNKLISNALADVQHDLIRGEGLSR 319 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +++ ++P+ + + G L + LA +S + + ++ Sbjct: 320 PMTKNPLFLPM------MVQMVSVGEETGKLDDTLATVSATYDTETDDRISAAIGMIQPV 373 Query: 128 ASAWIIGSLPFCVSTLVYFT 147 + I + F LV Sbjct: 374 MTIAIGLVVGFIAVALVSSM 393 >gi|315652230|ref|ZP_07905225.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] gi|315485536|gb|EFU75923.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] Length = 284 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 56/149 (37%), Gaps = 1/149 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I R + L D+P L + + AG+P+ +A + + + E + + Sbjct: 131 LNDKINARRDELLRDYPGMLSKLTLLINAGMPIREAWIKVANTNEGILYQEMKNTAMELY 190 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKV 119 G+ +E+ ++ + FST++ Q G N + E L ++S + K + K Sbjct: 191 NGMQEAEAYKTFGERCSIKSLRKFSTMMIQNLQKGSNEVVEFLRDMSTEAWEEKKHEVKR 250 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTS 148 + K I + ++ Sbjct: 251 KGEKASNKLLLPIGLIFAGVLILIIVPMF 279 >gi|254389726|ref|ZP_05004951.1| type II secretion system protein [Streptomyces clavuligerus ATCC 27064] gi|197703438|gb|EDY49250.1| type II secretion system protein [Streptomyces clavuligerus ATCC 27064] Length = 305 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 60/171 (35%), Gaps = 3/171 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + + G+ + + + +R E + ++ + G ++ Sbjct: 113 EAIEEWVRRMSDIHTVGVSLEATIQRSLETVPKAIREEVQLLVSREQSGWVPQDAYKAFA 172 Query: 74 RYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + V + ++ + G LS+A+ L+ L+ + +V+A + + + Sbjct: 173 DDLNDALVDEVAALLILHVEDRGSGLSKAMRELAEALQHEVLARREVEADRQKPRTNDRW 232 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + + S Y+ N G +LG A ++ + MR M Sbjct: 233 VTMFCLGIFG-ITALSGTYVEP-YNTVTGQFVLGFVAVSFVLVKVWMRRMA 281 >gi|134281633|ref|ZP_01768341.1| general secretion pathway protein F [Burkholderia pseudomallei 305] gi|134247300|gb|EBA47386.1| general secretion pathway protein F [Burkholderia pseudomallei 305] Length = 405 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 69/188 (36%), Gaps = 17/188 (9%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + + +R + + AGLP+ +A+AV+ Q+ D +R + Sbjct: 59 LGRKLSQREQAI------LTRQLASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEV 112 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SL+ ++++ R + + + G L L+ L+ + +R +K K+ Sbjct: 113 LGGHSLANALTQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEERNALKQKI 167 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIM 177 I + V+ L+ + P +NV + + +L + A + Sbjct: 168 LLAFTYPAIVTVIAFGI---VTFLLSYVVPQVVNVFASTKQQLPVLTIVMMALSDFVRHW 224 Query: 178 VMRLMINF 185 ++I Sbjct: 225 WWAILIGI 232 >gi|260550516|ref|ZP_05824726.1| type II secretory pathway [Acinetobacter sp. RUH2624] gi|260406431|gb|EEW99913.1| type II secretory pathway [Acinetobacter sp. RUH2624] Length = 408 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 19/197 (9%), Positives = 57/197 (28%), Gaps = 16/197 (8%) Query: 1 MKHLIKKRTAKFL---------DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51 ++ + +KR D + ++AG+P+ ++ +P E Sbjct: 47 VRTIREKRKNILEGLFKKKVTTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMRE 106 Query: 52 FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 + G + + ++ + ++ F + + G L L ++ Sbjct: 107 VVLGIKSEVEGGSTFASALKKYPQH-----FDNFFCSLVESGEQSGALETMLDRVAIYKE 161 Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + +K K++ + + + V + + V + Sbjct: 162 KSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGAELPAFTQMVVNMS 221 Query: 171 FMLIGIMVMRLMINFDV 187 + + ++I V Sbjct: 222 KWMQEYWFI-MIIAIGV 237 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 16/128 (12%), Positives = 38/128 (29%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + + AG+P+ DA+ G +++ + + I + R+ P Sbjct: 280 RTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVATGQQLQFAMRVSNRFP--- 336 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + + G L L ++ + + ME A + + V Sbjct: 337 --SMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLV 394 Query: 141 STLVYFTS 148 + Sbjct: 395 IAMYLPIF 402 >gi|149376646|ref|ZP_01894405.1| Type II secretory pathway, component PulF [Marinobacter algicola DG893] gi|149359019|gb|EDM47484.1| Type II secretory pathway, component PulF [Marinobacter algicola DG893] Length = 409 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 57/173 (32%), Gaps = 6/173 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLS 66 R LD+ + +AG+P+ + + + S + V + G +++ Sbjct: 61 RKKITLDELIVFCRQMHALTKAGIPLIRTMRGLADTTRSPALSEVLDDVTDRLEAGSTMA 120 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + P + + G L +A LS IL ++ K +++ Sbjct: 121 TAMQAHPKVFPD-----LFIAMIHVGENTGQLDDAFKRLSEILELERDTKRRLKQAMRYP 175 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + V+ LV + L D + V + L+G + Sbjct: 176 TFVVIALFGALMVVNFLVIPKFSAVFSKLGADLPFLTQVLVGTSNFLLGYWYI 228 Score = 42.0 bits (97), Expect = 0.035, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 46/132 (34%), Gaps = 5/132 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + AG+PV+ A+ V+ + + + I+ +G+ ES+ R R Sbjct: 272 LSRFARNFASMLSAGMPVTHALTVVADATDNAW---ISKHIKDMRIGIERGESLLRTARQ 328 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + + G++ + L N++ + + K A S+E + Sbjct: 329 SDM--FTPLILQMIAVGEETGSVDDMLVNVADFYDEDVDYGLKRLAESIEPILIVAMGIL 386 Query: 136 LPFCVSTLVYFT 147 + + Sbjct: 387 VLILALGVFLPI 398 >gi|297627215|ref|YP_003688978.1| hypothetical protein PFREUD_20700 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922980|emb|CBL57562.1| Hypothetical membrane protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 265 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 24/176 (13%), Positives = 61/176 (34%), Gaps = 5/176 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 H ++ K + +A ++ +R G + A+AV + Q +G Sbjct: 83 HRAERSAIKRSQEVAHACRVMSAQLRIGQTPAQALAVAAEECE-----VLAGCRAAQQVG 137 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + ++ ++ + + G L+ A +S+ + ++A + A Sbjct: 138 ADVPRTLMAAGDLPGCSGLAALGRAWKLCERSGSPLAPAATRVSQTVDGDARLRADIAAE 197 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 +A+ ++ +LP + + + + L G L A + G++ Sbjct: 198 LAVPRATGRLLTALPLLGIGMGFVSGGDPVAFLTTTMIGKACLVGAVVLVCAGLVW 253 >gi|319940445|ref|ZP_08014790.1| hypothetical protein HMPREF9464_00009 [Sutterella wadsworthensis 3_1_45B] gi|319806071|gb|EFW02820.1| hypothetical protein HMPREF9464_00009 [Sutterella wadsworthensis 3_1_45B] Length = 303 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 58/147 (39%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 +K + +R P+ALD++V AGLP + V V+ + + E Sbjct: 143 LKSMAARRYTALERSMPDALDLMVICAEAGLPFTRIVKVVSRELELSAPVLAHELTLTNA 202 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + S ++ + + + + + Q G L++AL N++ R + Sbjct: 203 ELEIMPERSAALRNLAERTRVPSIEGMVSTLIQAEQFGTPLAQALHNIAAESRSTLILTL 262 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + +A + A+ S ++ + V +V Sbjct: 263 EERAGKLPARLSLPLMTLILPPVVAIV 289 >gi|261867450|ref|YP_003255372.1| TadC [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412782|gb|ACX82153.1| TadC [Aggregatibacter actinomycetemcomitans D11S-1] Length = 288 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 69/157 (43%), Gaps = 4/157 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 + ++K + K ++D +D++ +V+ G+ + A+ + ++ Sbjct: 130 IGSILKAKIKKIMNDLAGFIDLVAVNVQTGISIEAALKQVATDFKTLNPDLTYVMLRIIR 189 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + +S+++ + +P E+ F TV+ G ++ L LS +R+ + + + Sbjct: 190 KSEITGMSQALQDLSVSLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSTDIREIQLLAIE 249 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + ++ AK S +I + F + L+ +PG M V Sbjct: 250 EKLGTLSAKMSIPLILFIMFPIIILI--LAPGVMRVF 284 >gi|54310367|ref|YP_131387.1| putative MSHA biogenesis protein MshG [Photobacterium profundum SS9] gi|46914808|emb|CAG21585.1| putative MSHA biogenesis protein MshG [Photobacterium profundum SS9] Length = 407 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 16/164 (9%), Positives = 43/164 (26%), Gaps = 4/164 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + +AG+P+ A+ + +S P+ E + + Sbjct: 66 EALVIFCRQLYSLTKAGVPLLRAIKGLGQSASHPLMKETLDAVMSDLTNG----HSLSAA 121 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + S + + G L E+L L+ + ++++ I Sbjct: 122 MKQHRRVFSDLFVSMIHVGENTGRLDESLLQLAHYFEQEMETRRRIKSAMRYPLFVISAI 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++ V D + + + + Sbjct: 182 MLAMVVLNIKVIPQFASMFARFGVDLPLPTRILIGTSNFFVHYW 225 Score = 35.9 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 11/135 (8%), Positives = 29/135 (21%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 +RAG+P++ A+ + + + + S Sbjct: 268 RAQMSRFSRTFALMIRAGVPLNQAIQMSAEALGNRFLE-----NRLIEMKNGIESGNSIT 322 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G + L +S K +E + Sbjct: 323 STATDSGVFTPLVLQMIAVGEETGQVDNLLLEVSDFYDREVEYDLKTLTARIEPLLLLVV 382 Query: 133 IGSLPFCVSTLVYFT 147 + + Sbjct: 383 AVMVLILALGIFLPM 397 >gi|332142397|ref|YP_004428135.1| type IV pilus biogenesis protein PilC [Alteromonas macleodii str. 'Deep ecotype'] gi|327552419|gb|AEA99137.1| type IV pilus biogenesis protein PilC [Alteromonas macleodii str. 'Deep ecotype'] Length = 402 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 53/175 (30%), Gaps = 9/175 (5%) Query: 8 RTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSL 65 RT K D I + AG+ + ++ +I ++ VR + + G L Sbjct: 56 RTQKIKPADISVISRQIATMLAAGVTLIQSLEMIAQGHANPAVRKLLGEITDEVKSGNPL 115 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S ++ + + + G L ++ + +K+K++ Sbjct: 116 SSALRKHPL-----YFDDLYCDLVYTGEQSGALETIYDRIATYKEKAEALKSKIKKAMFY 170 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 A + + + V + + +L ++ GI + Sbjct: 171 PIAVLVVAFIVTTILLVFVVPQFEEIFSSFGAELPAFTQFVLAISRFVQDYGIFI 225 Score = 37.8 bits (86), Expect = 0.63, Method: Composition-based stats. Identities = 15/131 (11%), Positives = 40/131 (30%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P+ A+ G + R + + G+ + ++ Sbjct: 272 FTRTLATTFAAGVPLIGALESAAGASGNAVYRDAILYIRKEVAGGMPMHVAMRA------ 325 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 Q T + + G++ E L+ ++ I + +E A + + Sbjct: 326 TQVFPDMVTQMIAIGEESGSVDEMLSKIATIYEAEVDDMVDGLTSLLEPMIMAVLGVVIG 385 Query: 138 FCVSTLVYFTS 148 + + Sbjct: 386 GLIVAMYLPIF 396 >gi|260892665|ref|YP_003238762.1| Type II secretion system F domain protein [Ammonifex degensii KC4] gi|260864806|gb|ACX51912.1| Type II secretion system F domain protein [Ammonifex degensii KC4] Length = 269 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 21/146 (14%), Positives = 50/146 (34%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + +R A P+ + ++ AG + A+ P+ E RV+ Sbjct: 111 LNSRVARRKALIRRQLPDFSVFLATALTAGADLPTALREAGTHVGGPIGEEVERVLLEFG 170 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG +L ++ M + E+ G +++E + + R + + Sbjct: 171 LGRNLVSALEDMADRCDMDELRLLLWSAGRAYAYGTSVAEEVRAQADRQRSMRRFEVMEA 230 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146 A + I+ + + +V + Sbjct: 231 AGKLAIYLIFPILFFMLLPLMVVVMY 256 >gi|239981063|ref|ZP_04703587.1| hypothetical protein SalbJ_16622 [Streptomyces albus J1074] gi|291452929|ref|ZP_06592319.1| integral membrane protein [Streptomyces albus J1074] gi|291355878|gb|EFE82780.1| integral membrane protein [Streptomyces albus J1074] Length = 285 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 64/162 (39%), Gaps = 1/162 (0%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + + VR+G A+ VG++ +E V G ++ ++ + +S Sbjct: 119 LAQEVRSGRQPVAALLHAVGEARGLGGAEAG-VTAAARFGGDVAGALREAAGAPGAEGLS 177 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + V G L+ + L+ LR ++ A + A A+++ ++ +LP Sbjct: 178 GLAACWEVAVDRGAGLASGVERLAAALRAERDQAADLAAQLAGARSTVLMLAALPLLGLV 237 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + + VL++ P G L + +A G+ ++ Sbjct: 238 LGWAMGADPLRVLLHTPAGLACLLMGSALESAGLWWALGIVR 279 >gi|291296512|ref|YP_003507910.1| type II secretion system protein [Meiothermus ruber DSM 1279] gi|290471471|gb|ADD28890.1| type II secretion system protein [Meiothermus ruber DSM 1279] Length = 406 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 51/157 (32%), Gaps = 10/157 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72 D + + AGLP+ A+A++ Q+ + + G + SE++S+ Sbjct: 65 KDLAIFSRQLATMLNAGLPIVQALAILERQTEKKKFQSILKEIRTEVEGGANFSEALSKH 124 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G L L L+ L + ++ K+++ + Sbjct: 125 SL------FTRLYINLVRAGETSGTLDAILDRLATFLENELALRGKIRSAMTYPA---IV 175 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 L+ P + +L LL A Sbjct: 176 FVFAIGVTYFLLTGIVPQFAQILTGLGSELPLLTRAL 212 >gi|310779619|ref|YP_003967952.1| Type II secretion system F domain protein [Ilyobacter polytropus DSM 2926] gi|309748942|gb|ADO83604.1| Type II secretion system F domain protein [Ilyobacter polytropus DSM 2926] Length = 400 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 18/171 (10%), Positives = 52/171 (30%), Gaps = 13/171 (7%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D + + G+ + V+ Q ++ + + G S+S ++S+ Sbjct: 61 KDIAVFTRQLSTMLEGGVGLLRCFTVLEKQCEKPKLKVVVGEIRQDISSGKSISYALSKH 120 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G L L +++ + +K K++ + + Sbjct: 121 PQ-----YFDSLYVSMVKAGEASGALDTILNRIAQSQEKAEEIKGKIRTAMIYPS---IV 172 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA----FMLIGIMVM 179 + V L+ F P ++ + + L + + + Sbjct: 173 LVLSFTIVFLLMSFVIPNFVVLFTDTGVPMPSLTLFVIGISKWFNKNWYWI 223 Score = 42.4 bits (98), Expect = 0.030, Method: Composition-based stats. Identities = 13/129 (10%), Positives = 40/129 (31%), Gaps = 7/129 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+P+ A ++ + + E R ++ + P Sbjct: 269 FSRTLETLLDSGVPILSAFDIVADTVGNILMGESIREVKDKIKSGHTIAKPLEESGSFPP 328 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L + L+ L+ + ++ ++ + +I +L Sbjct: 329 -----MVVNMVDVGEESGELVKMLSKLADFNE--RELEETIRDSLAAFEPMMILIMALTV 381 Query: 139 CVSTLVYFT 147 V + + Sbjct: 382 GVIVVAMYL 390 >gi|73668275|ref|YP_304290.1| transporter [Methanosarcina barkeri str. Fusaro] gi|72395437|gb|AAZ69710.1| transporter [Methanosarcina barkeri str. Fusaro] Length = 660 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 55/145 (37%), Gaps = 4/145 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R K + P+ L + +G+ +++++ +I + E +++ E G S S+ Sbjct: 445 RMRKIDEKMPDFLKSLSSMNESGIMLANSLKIISESKMGILSKELKKLKEDLSWGTSTSK 504 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + + S +I ++ +L L+ ++ R+ ++MK + Sbjct: 505 ALMNLENSIKTPSSSRILHIIVKANESTSDLKNVLSITAKQARNDEDMKKE----RSSTM 560 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYM 152 I + F V + + Sbjct: 561 VVYVITIYVAFFVFLFIVYILATNF 585 Score = 44.0 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 18/170 (10%), Positives = 46/170 (27%), Gaps = 4/170 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQH 60 R A A+ + + G+ + D + S E V+ Sbjct: 123 FQANNRQASIDKSMLPAITYMYALTKGGMSIYDVFRSLSRYSYIFGATAEEISYVVRDMD 182 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + ++ + E+ + G ++E + N S + M + Sbjct: 183 YLGKDFITSLKIAKERTPSEIFKDFVDGLIIVSSSGTITEYVKNKSEQYQGLAEMANRNL 242 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 ++ A ++ + + +V + L + +L Sbjct: 243 LQRLDVLAEIYVTALVAGPLFVMVTLVVLQFF--LPASAQILYMLIYIIL 290 >gi|312143781|ref|YP_003995227.1| Type II secretion system F domain [Halanaerobium sp. 'sapolanicus'] gi|311904432|gb|ADQ14873.1| Type II secretion system F domain [Halanaerobium sp. 'sapolanicus'] Length = 403 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 53/161 (32%), Gaps = 6/161 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+ + DA+ ++ QS ++ +V + G+SL++++S+ P Sbjct: 70 FSQQFAAMIDAGISLVDALNILADQSDHKHLKKVLMQVRDDVETGVSLADAVSKHPDSFP 129 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + GG L L L+ + + + V++ + + Sbjct: 130 -----ELYSQLIRAGESGGVLDTILNKLANHYDRQHELNSMVKSALYYPAVILSVGLIVV 184 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + T V G + +A + Sbjct: 185 IFLVTQVVPQFVGMFQDFGTALPLPTRMLLAISSFAQSYWW 225 >gi|239500937|ref|ZP_04660247.1| pilin biogenesis protein [Acinetobacter baumannii AB900] Length = 408 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 17/193 (8%), Positives = 54/193 (27%), Gaps = 15/193 (7%) Query: 1 MKHLIKKRTAKFL---------DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51 ++ + +KR D + ++AG+P+ ++ +P E Sbjct: 47 VRTIREKRKNILEGLFKKKVTTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMRE 106 Query: 52 FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 + G + + ++ + ++ + + G L L ++ Sbjct: 107 VVLGIKGEVEGGSTFASALRKYPQH-----FDNLFCSLVESGEQSGALETMLDRVAIYKE 161 Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + +K K++ + + + V D + V + Sbjct: 162 KSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMS 221 Query: 171 FMLIGIMVMRLMI 183 + + ++ Sbjct: 222 KWMQEYWFIMIIA 234 Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 40/129 (31%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG+P+ DA+ G +++ + ++ E G L ++ R Sbjct: 280 RTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVATGQQLQFAMRVSNR----- 334 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + + G L L ++ + + ME A + + Sbjct: 335 -FPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGL 393 Query: 140 VSTLVYFTS 148 V + Sbjct: 394 VIAMYLPIF 402 >gi|170768577|ref|ZP_02903030.1| type IV pilus assembly protein PilC [Escherichia albertii TW07627] gi|170122681|gb|EDS91612.1| type IV pilus assembly protein PilC [Escherichia albertii TW07627] Length = 400 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 23/182 (12%), Positives = 58/182 (31%), Gaps = 22/182 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+++A++V Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSESLALLVEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWAEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPVIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + G +L+ ++ ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIITLADFSSHWGWLLILFGFLLVVANKLLM 235 Query: 180 RL 181 R Sbjct: 236 RR 237 >gi|121603665|ref|YP_980994.1| general secretion pathway protein F [Polaromonas naphthalenivorans CJ2] gi|120592634|gb|ABM36073.1| general secretion pathway protein F [Polaromonas naphthalenivorans CJ2] Length = 412 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 61/177 (34%), Gaps = 14/177 (7%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 I V +GLP+ A+ + +S + P R + + G + ++++ Sbjct: 74 ALAIWTRQIAGLVTSGLPLERALTALADESENIPQRHLVANLRAEVNGGTPFATALAQHP 133 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R E S + + GNL L L+ L + +KA++ ++ + Sbjct: 134 R-----EFSNTYCAVVGAGEHSGNLGMVLERLADDLEQSQELKAQLVGAALYPA---IVT 185 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI-----GIMVMRLMINF 185 V L+ + P V R +L V + G +++ +I Sbjct: 186 LVAIAIVMFLLGYVVPQVAQVFAGSKRALPVLTVMMLGLAGFVRNQGWLILLTLITI 242 Score = 35.9 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 39/130 (30%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ S+ + G L+ ++S R+ Sbjct: 281 FAGTLAMLAGAGVPILKALQAAADTLSNRAMRADALDALVLVREGTPLASALSHKKRFPG 340 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + + G L L +R L +A A +E + + Sbjct: 341 ------LLSMFARLGEQTGQLPLMLDRAARQLGTEVQRRAMQLATLLEPLLIVAMGLVVM 394 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 395 LIVLAVLLPI 404 >gi|196233098|ref|ZP_03131946.1| type II secretion system protein [Chthoniobacter flavus Ellin428] gi|196222905|gb|EDY17427.1| type II secretion system protein [Chthoniobacter flavus Ellin428] Length = 362 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 21/161 (13%), Positives = 56/161 (34%), Gaps = 6/161 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + + AGL + +++ V+ + +R + G SLS++++ R Sbjct: 129 FTEQLAHLLGAGLTLDESLNVLAQRLRQPRLRGLSSTLHRALIDGRSLSQALAEFPRIFT 188 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G L + L LS L ++++ KV+ + L Sbjct: 189 P-----LYVNLVSAGEASGALPKILMRLSEHLSALQDLRDKVRGALLYPAVLIVAGIGLV 243 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 T++ + + G + ++ ++++ Sbjct: 244 VAFMTVMVPKLTTFFHGTGQTLPGPTQMLISINYVIVHYWW 284 >gi|281357007|ref|ZP_06243497.1| Type II secretion system F domain protein [Victivallis vadensis ATCC BAA-548] gi|281316565|gb|EFB00589.1| Type II secretion system F domain protein [Victivallis vadensis ATCC BAA-548] Length = 419 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 17/168 (10%), Positives = 43/168 (25%), Gaps = 7/168 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + AGLP+ ++ + Q+ +P G + Sbjct: 76 RKELTVVTRQLAILLSAGLPLIRSLHTLERQAKNPAVKIVLSKTAETVEGG----ATFAE 131 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G + L L+ + + KV++ + I Sbjct: 132 ALAQHPRSFDKLYLNMVRAGEASGAMEIILDRLASFMEKAARISGKVKSAMIYPCVVLTI 191 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVAAAFMLIGIM 177 + + L+ LL + + L+ Sbjct: 192 ALLAVVGLMIFIVPNFQKIFTELLGPNEPLPDITLLVMGISNTLVSHW 239 Score = 35.5 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 16/134 (11%), Positives = 44/134 (32%), Gaps = 7/134 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + +G+PV +A++++ ++ V S ++V + G +++ +S Sbjct: 284 AISRFSRTLGTLMSSGVPVLNALSIVKETSGNETVASAIQKVHDAVKEGEGIAKPLS--- 340 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G L E L ++ + + +E + Sbjct: 341 ---GTKIFPEMVISMVEVGEETGKLPEMLDKIANTYDEEVDNAVSALTSMIEPLMIVLLA 397 Query: 134 GSLPFCVSTLVYFT 147 + V L Sbjct: 398 VIVGGIVIALFLPL 411 >gi|148974880|ref|ZP_01811860.1| Flp pilus assembly protein TadC [Vibrionales bacterium SWAT-3] gi|145965389|gb|EDK30638.1| Flp pilus assembly protein TadC [Vibrionales bacterium SWAT-3] Length = 288 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 60/158 (37%), Gaps = 4/158 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIET 58 + K P LD++ V G+ + ++ + + D + RV Sbjct: 133 VSARGKANIKHISSRLPFLLDLMNVCVHTGMTIESSLEYLAKELHSIDSNLAHVVRVTVE 192 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + L +++ +P E F + Q G ++ LA L+ +R+ M + Sbjct: 193 RSRLVGLEKALEEFYALVPTSESQSFVMTMVQSLQFGSSVGPVLATLATDIRELNMMDLE 252 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 + M AK S +I + + L+ PG + +L+ Sbjct: 253 ERIGKMGAKMSIPLIAFIMVPIVVLIAA--PGILRMLM 288 >gi|87309424|ref|ZP_01091559.1| type IV pilus biogenesis protein PilC [Blastopirellula marina DSM 3645] gi|87287732|gb|EAQ79631.1| type IV pilus biogenesis protein PilC [Blastopirellula marina DSM 3645] Length = 397 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 23/176 (13%), Positives = 63/176 (35%), Gaps = 8/176 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D + + V G+ +S A+ + + ++ +++ + + G S ++ + Sbjct: 60 DIIYFTNQLAVMVDTGINLSTAIESVSSQEKNEALKTLLVDIRRSVESGEDFSAALGKYP 119 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 ++ + + S+ G L E L ++ +R+ ++ KV+A + Sbjct: 120 KH-----FNKTYISLVKASEQTGMLGEMLERIAAYMRNEVEIRNKVRAALAYPAVMVVLA 174 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR--LMINFDV 187 ++ + T V ++ +AA+ +L+ +I V Sbjct: 175 TAVTIFLLTYVLPKFTPLFERKGAKLPTPTIIMMAASDILLDYWWAWLAAIIAVSV 230 >gi|302559126|ref|ZP_07311468.1| integral membrane protein [Streptomyces griseoflavus Tu4000] gi|302476744|gb|EFL39837.1| integral membrane protein [Streptomyces griseoflavus Tu4000] Length = 319 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 18/174 (10%), Positives = 63/174 (36%), Gaps = 2/174 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + + + ++ + + A+ ++ +R +++ L E++ ++ Sbjct: 107 EALASWTESLRDTIAGAVGLEQAIPASARAAAPVLRPHLDALVDRLRSRTPLPEALQQLA 166 Query: 74 RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + ++ G L + L L++ R+ +M+ +V A + S I Sbjct: 167 DEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQRASTRRSVQI 226 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + ++ + + ++ G ++L +G +R + + Sbjct: 227 VVAVSIAFVLGLSVFNRDFVEP-YGTAVGQLVLACVCGLFALGFWWLRKLSTIE 279 >gi|218295664|ref|ZP_03496460.1| type II secretion system protein [Thermus aquaticus Y51MC23] gi|218243823|gb|EED10350.1| type II secretion system protein [Thermus aquaticus Y51MC23] Length = 391 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 17/157 (10%), Positives = 49/157 (31%), Gaps = 5/157 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D + + AGL + ++A++ Q+ + E + + + ++ Sbjct: 50 KDLAIFSRQLATMIGAGLTLLQSLAILEKQTENKKFREIIK-----EVRTDIEGGMAFSD 104 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + S + + G L L L+ L ++ K+++ Sbjct: 105 ALAKHKLFSRLYVNLVRAGETSGGLDVILDRLAAFLEKELELRGKIRSAMTYPTIVFVFA 164 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + + + T + + L ++ +A + Sbjct: 165 VGVAYFLLTGIVPQFAQILTDLGSELPLLTRFLIAVS 201 Score = 37.8 bits (86), Expect = 0.72, Method: Composition-based stats. Identities = 11/141 (7%), Positives = 38/141 (26%), Gaps = 8/141 (5%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + +G+ + +A+ + G + + V E + + Sbjct: 250 RKTAIAR----FSRTLALLLASGVNILEALDITKGTAGNSVVEEIINTAKNKVQQGEP-- 303 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + + + + G L L+ ++ + ++E Sbjct: 304 --LNLTLAQHPFVFPPMVSSMVAIGEETGALDTLLSKIADFYEREVDEAVASLTAAIEPL 361 Query: 128 ASAWIIGSLPFCVSTLVYFTS 148 ++ + V+ + Sbjct: 362 MIIFLGVIVGMIVAGMFLPLF 382 >gi|53717648|ref|YP_106634.1| general secretory pathway protein F [Burkholderia pseudomallei K96243] gi|53723931|ref|YP_104302.1| general secretion pathway protein F [Burkholderia mallei ATCC 23344] gi|67641922|ref|ZP_00440687.1| general secretion pathway protein F [Burkholderia mallei GB8 horse 4] gi|76810282|ref|YP_331638.1| general secretion pathway protein F [Burkholderia pseudomallei 1710b] gi|121599922|ref|YP_994794.1| general secretion pathway protein F [Burkholderia mallei SAVP1] gi|124385216|ref|YP_001027863.1| general secretion pathway protein F [Burkholderia mallei NCTC 10229] gi|126449176|ref|YP_001082189.1| general secretion pathway protein F [Burkholderia mallei NCTC 10247] gi|126454081|ref|YP_001064294.1| general secretion pathway protein F [Burkholderia pseudomallei 1106a] gi|167000475|ref|ZP_02266289.1| general secretion pathway protein F [Burkholderia mallei PRL-20] gi|167736417|ref|ZP_02409191.1| general secretion pathway protein F [Burkholderia pseudomallei 14] gi|167813492|ref|ZP_02445172.1| general secretion pathway protein F [Burkholderia pseudomallei 91] gi|167822033|ref|ZP_02453504.1| general secretion pathway protein F [Burkholderia pseudomallei 9] gi|167892118|ref|ZP_02479520.1| general secretion pathway protein F [Burkholderia pseudomallei 7894] gi|167900629|ref|ZP_02487834.1| general secretion pathway protein F [Burkholderia pseudomallei NCTC 13177] gi|167908853|ref|ZP_02495944.1| general secretion pathway protein F [Burkholderia pseudomallei 112] gi|167921123|ref|ZP_02508214.1| general secretion pathway protein F [Burkholderia pseudomallei BCC215] gi|217423903|ref|ZP_03455403.1| general secretion pathway protein F [Burkholderia pseudomallei 576] gi|226193102|ref|ZP_03788712.1| general secretion pathway protein F [Burkholderia pseudomallei Pakistan 9] gi|237814401|ref|YP_002898852.1| general secretion pathway protein F [Burkholderia pseudomallei MSHR346] gi|242314746|ref|ZP_04813762.1| general secretion pathway protein F [Burkholderia pseudomallei 1106b] gi|254174966|ref|ZP_04881627.1| general secretion pathway protein F [Burkholderia mallei ATCC 10399] gi|254186540|ref|ZP_04893057.1| general secretion pathway protein F [Burkholderia pseudomallei Pasteur 52237] gi|254194735|ref|ZP_04901166.1| general secretion pathway protein F [Burkholderia pseudomallei S13] gi|254201376|ref|ZP_04907740.1| general secretion pathway protein F [Burkholderia mallei FMH] gi|254206718|ref|ZP_04913069.1| general secretion pathway protein F [Burkholderia mallei JHU] gi|254259573|ref|ZP_04950627.1| general secretion pathway protein F [Burkholderia pseudomallei 1710a] gi|254298656|ref|ZP_04966107.1| general secretion pathway protein F [Burkholderia pseudomallei 406e] gi|254357383|ref|ZP_04973657.1| general secretion pathway protein F [Burkholderia mallei 2002721280] gi|52208062|emb|CAH33992.1| general secretory pathway protein F [Burkholderia pseudomallei K96243] gi|52427354|gb|AAU47947.1| general secretion pathway protein F [Burkholderia mallei ATCC 23344] gi|76579735|gb|ABA49210.1| general secretion pathway protein F [Burkholderia pseudomallei 1710b] gi|121228732|gb|ABM51250.1| general secretion pathway protein F [Burkholderia mallei SAVP1] gi|124293236|gb|ABN02505.1| general secretion pathway protein F [Burkholderia mallei NCTC 10229] gi|126227723|gb|ABN91263.1| general secretion pathway protein F [Burkholderia pseudomallei 1106a] gi|126242046|gb|ABO05139.1| general secretion pathway protein F [Burkholderia mallei NCTC 10247] gi|147747270|gb|EDK54346.1| general secretion pathway protein F [Burkholderia mallei FMH] gi|147752260|gb|EDK59326.1| general secretion pathway protein F [Burkholderia mallei JHU] gi|148026447|gb|EDK84532.1| general secretion pathway protein F [Burkholderia mallei 2002721280] gi|157808490|gb|EDO85660.1| general secretion pathway protein F [Burkholderia pseudomallei 406e] gi|157934225|gb|EDO89895.1| general secretion pathway protein F [Burkholderia pseudomallei Pasteur 52237] gi|160696011|gb|EDP85981.1| general secretion pathway protein F [Burkholderia mallei ATCC 10399] gi|169651485|gb|EDS84178.1| general secretion pathway protein F [Burkholderia pseudomallei S13] gi|217392966|gb|EEC32988.1| general secretion pathway protein F [Burkholderia pseudomallei 576] gi|225934702|gb|EEH30679.1| general secretion pathway protein F [Burkholderia pseudomallei Pakistan 9] gi|237503308|gb|ACQ95626.1| general secretion pathway protein F [Burkholderia pseudomallei MSHR346] gi|238522937|gb|EEP86379.1| general secretion pathway protein F [Burkholderia mallei GB8 horse 4] gi|242137985|gb|EES24387.1| general secretion pathway protein F [Burkholderia pseudomallei 1106b] gi|243063664|gb|EES45850.1| general secretion pathway protein F [Burkholderia mallei PRL-20] gi|254218262|gb|EET07646.1| general secretion pathway protein F [Burkholderia pseudomallei 1710a] Length = 405 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 69/188 (36%), Gaps = 17/188 (9%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + + +R + + AGLP+ +A+AV+ Q+ D +R + Sbjct: 59 LGRKLSQREQAI------LTRQLASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEV 112 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SL+ ++++ R + + + G L L+ L+ + +R +K K+ Sbjct: 113 LGGHSLANALTQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEERNALKQKI 167 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIM 177 I + V+ L+ + P +NV + + +L + A + Sbjct: 168 LLAFTYPAIVTVIAFGI---VTFLLSYVVPQVVNVFASTKQQLPVLTIVMMALSDFVRHW 224 Query: 178 VMRLMINF 185 ++I Sbjct: 225 WWAILIGI 232 >gi|302343414|ref|YP_003807943.1| Type II secretion system F domain protein [Desulfarculus baarsii DSM 2075] gi|301640027|gb|ADK85349.1| Type II secretion system F domain protein [Desulfarculus baarsii DSM 2075] Length = 305 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 64/147 (43%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ L +R+A P+ LD++V +V +GL + AV + SS + E Sbjct: 146 LEKLALRRSALIARQMPSMLDLLVIAVESGLGLDAAVQRVSRDLAASSPVLAHELAIFSL 205 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 LG + +++ + + + E++ ++ + G ++ ++ + LR ++ K Sbjct: 206 ELKLGAARGDALRNLAKRCGVDEMAGLVAMLIQADRFGVSIGRSIRVFADDLRTKRRQKL 265 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + QA + K ++ + + ++ Sbjct: 266 EEQAAKIPLKLLFPVLFLIFPAIMAVM 292 >gi|296133931|ref|YP_003641178.1| Type II secretion system F domain protein [Thermincola sp. JR] gi|296032509|gb|ADG83277.1| Type II secretion system F domain protein [Thermincola potens JR] Length = 294 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 63/157 (40%), Gaps = 6/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--PVRSEFRRVIET 58 ++ +K + + L + P ++ + + AGLP S AV +V S P+ E V+ Sbjct: 139 LEKKLKMKKRQILIELPGFINTLALLINAGLPFSSAVHKVVHDSDPDRPLYKEMNYVLAD 198 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKA 117 G + ++ R + E++ F + I G + L L++ +++ A Sbjct: 199 IGAGKPIHQAYEDFARRCRIPEITRFVSTIIQNLNRGNGDIVYVLRTLAQEAWEKRKDIA 258 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + Q +K + + ++ + +P M + Sbjct: 259 RKQGEEASSKL---VFPMVMVFIAVAIIVLAPAIMTM 292 >gi|258515694|ref|YP_003191916.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM 771] gi|257779399|gb|ACV63293.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM 771] Length = 294 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 64/154 (41%), Gaps = 2/154 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I+ R + + + +D++ + AGL +S ++ + + EF+ Sbjct: 137 INMKIRARQKRAQLEILDFIDLLTNGIDAGLDLSTSIDRVTKHMPGILAEEFQYAFVEIE 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG SE++ M + + +++V+ I + G +++ L + + ++ A Sbjct: 197 LGRRRSEALKNMAQRLDIKDVNLLVDAIIQAERTGVPIAKVLKDQANRIKQDFRTNALKM 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 A + K A +I + + +V P ++ + Sbjct: 257 AQAASIKMLAPMILFILPALFIVV--LGPPFIGI 288 >gi|326445375|ref|ZP_08220109.1| type II secretion system protein [Streptomyces clavuligerus ATCC 27064] Length = 309 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 60/171 (35%), Gaps = 3/171 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + + G+ + + + +R E + ++ + G ++ Sbjct: 117 EAIEEWVRRMSDIHTVGVSLEATIQRSLETVPKAIREEVQLLVSREQSGWVPQDAYKAFA 176 Query: 74 RYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + V + ++ + G LS+A+ L+ L+ + +V+A + + + Sbjct: 177 DDLNDALVDEVAALLILHVEDRGSGLSKAMRELAEALQHEVLARREVEADRQKPRTNDRW 236 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + + S Y+ N G +LG A ++ + MR M Sbjct: 237 VTMFCLGIFG-ITALSGTYVEP-YNTVTGQFVLGFVAVSFVLVKVWMRRMA 285 >gi|226951823|ref|ZP_03822287.1| type 4 fimbrial assembly protein [Acinetobacter sp. ATCC 27244] gi|226837363|gb|EEH69746.1| type 4 fimbrial assembly protein [Acinetobacter sp. ATCC 27244] Length = 408 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 18/188 (9%), Positives = 52/188 (27%), Gaps = 15/188 (7%) Query: 1 MKHLIKKRTAKFL---------DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51 +K++ +KR D + ++AG+P+ ++ +P E Sbjct: 47 IKNIREKRKNILEGLMKKKVTTLDITVFTRQLATMMKAGVPLVQGFEIVAEGLENPSMRE 106 Query: 52 FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 + G + + ++ + + + + G L L ++ Sbjct: 107 VVLGLKGEVEGGNTFAGALRKYPQ-----YFDNLFCSLVESGEQSGALETMLDRVAIYKE 161 Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + +K K++ + + + V + D + V + Sbjct: 162 KSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMS 221 Query: 171 FMLIGIMV 178 + Sbjct: 222 VWMQEYWF 229 Score = 39.3 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 38/128 (29%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + + AG+P+ DA+ G +++ V E I + R+ P Sbjct: 280 RTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVATGQQLQFAMRVSNRFP--- 336 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + + G L L ++ + + ME A + + V Sbjct: 337 --SMAIQMVAIGEESGALDSMLDKVATHFENEVDNAVDGLTAMMEPLIMAILGVLVGGLV 394 Query: 141 STLVYFTS 148 + Sbjct: 395 IAMYLPIF 402 >gi|37680188|ref|NP_934797.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016] gi|37198935|dbj|BAC94768.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016] Length = 293 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 63/148 (42%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIE 57 + + K P+A+D++V V +GL ++ A + + P+ +FR Sbjct: 134 LNLNADRYRKKLKQSAPDAIDLLVLCVESGLSLNRAFERVARYLQEQHAPMAEQFRVTSA 193 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L +++++ + + E+ +T +++ + G L++ L +S R ++ + Sbjct: 194 ELDLLNDRTQALNNLSWRTGIPELHTLATTLTMADKYGSPLADTLRQISEDARRQRALDI 253 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A + K + + + + +V Sbjct: 254 EERAGKLPGKITLIQMTMIMLPMLVMVI 281 >gi|258652940|ref|YP_003202096.1| type II secretion system protein [Nakamurella multipartita DSM 44233] gi|258556165|gb|ACV79107.1| type II secretion system protein [Nakamurella multipartita DSM 44233] Length = 302 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 21/181 (11%), Positives = 64/181 (35%), Gaps = 2/181 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++R LD + + ++ + +A+ +S +R R++ + Sbjct: 94 AEQRQIARLDALVAWTESLRDTIAGHHSLENALPSSAVHASPLIRPALLRLVGQIRARVP 153 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAKVQALS 123 + ++ + + + + ++ L + L++L+ R+ M+ ++ A Sbjct: 154 VDRALVMLADELNDPSADLVIAELVLSAKRRGDGLQQRLSSLATTAREELEMRRRIFADR 213 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + II + + L+ Y+ + G ++L + +R + Sbjct: 214 AEIRRGTQIIVVVTVVFAGLLVVFGGDYVRP-YSTLSGQVVLAIVVGIFAAAFAWLRRLA 272 Query: 184 N 184 + Sbjct: 273 D 273 >gi|149909542|ref|ZP_01898196.1| bipartite nuclear localization signal containing protein, similarto TadC [Moritella sp. PE36] gi|149807447|gb|EDM67398.1| bipartite nuclear localization signal containing protein, similarto TadC [Moritella sp. PE36] Length = 296 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 72/159 (45%), Gaps = 4/159 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 + K+ T K + P LD++ V+ G+ + A++ + + ++ + +++ Sbjct: 139 LNLRAKQLTEKISNKLPYLLDLMAVCVQTGMTLESAISYLSKEMTEFDKDLTNVLVKTND 198 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + L+ ++ + +P E+ F + Q G ++S+ L LS +R + + + Sbjct: 199 RARIVGLAMALDELYLRVPSNEMRSFVMTLKQSLQFGSSISQVLTTLSGDIRQVQILGLE 258 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + + AK S +I + V L+ PG M ++IN Sbjct: 259 EKIGKLAAKMSIPLIVFIMVPVVILIAA--PGIMRMMIN 295 >gi|330811031|ref|YP_004355493.1| type II secretion system protein; membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379139|gb|AEA70489.1| putative type II secretion system protein; putative membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 321 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 65/158 (41%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + + R + FP+ALD++V V +GL + + + + S + E V Sbjct: 160 VGKRKQARQGRLRAAFPDALDLMVVCVESGLALPTTIERVAEEMSVSQVELAEELALVNA 219 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G++ +E++ ++ L+++ ++++ + G ++++ L + RDR+ A Sbjct: 220 QIRAGITSTEALKQLAVRTGLEDIQGLVSLLAQSIRFGTSVADTLRIYADEFRDRRTQAA 279 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + K +I L + P + V Sbjct: 280 EEMGAKIGTKLIFPLIFCLWPS--FFLVAIGPAMIGVF 315 >gi|253689938|ref|YP_003019128.1| type II secretion system protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756516|gb|ACT14592.1| type II secretion system protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 401 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 50/154 (32%), Gaps = 11/154 (7%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 + + + + AGLP+ +A+ ++ Q R R V G SLSE++ Sbjct: 58 REQLGELIKQLAALLHAGLPLLEALKLVSEQHERPGWRCVLRDVRTRVAQGNSLSEALQE 117 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P+ + +L G L L++ + ++ KV + Sbjct: 118 YPHIFPV-----LYHSLIAVGELTGKLDTCCLQLAQQQEKQSRLQQKVIKALRYP---CF 169 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHM 163 ++ ++ P + + + P Sbjct: 170 VLAIAVLVSMMMLTLVLPEFATLYSSFDTPLPWF 203 >gi|149909167|ref|ZP_01897824.1| putative type IV pilus protein [Moritella sp. PE36] gi|149807691|gb|EDM67637.1| putative type IV pilus protein [Moritella sp. PE36] Length = 294 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 63/158 (39%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +K + + P+ALD++V V +GL + + + S + E+ Sbjct: 133 LKWRARTVNYRIALALPDALDLMVICVESGLTLEAVFQRVGHEMTAVSPELSREWLITEA 192 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L S +++ + + L EV +S + G ++ + ++ R + ++ Sbjct: 193 ELRLLDSRLTALNNLAKRTDLVEVENMVIALSQAEKYGSKIAPTMRLIASDSRQYQYLRL 252 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + AK S ++ + V L+ +P + +L Sbjct: 253 EEKVGKIPAKMSLPVVVLIMLPVVVLI--VAPTIIALL 288 >gi|121534460|ref|ZP_01666283.1| type II secretion system protein [Thermosinus carboxydivorans Nor1] gi|121306953|gb|EAX47872.1| type II secretion system protein [Thermosinus carboxydivorans Nor1] Length = 407 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 9/163 (5%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSE 67 + D + AGLP+ + +++++ Q+ + ++S + V G +LS Sbjct: 60 RRVTVKDLAVFCRQFATMIDAGLPLLNCLSILIDQTYNPKLKSAVQDVYRKVQEGETLSR 119 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + P+ + +LGG L E L L+ + KV++ + Sbjct: 120 ALGNHPQVFPV-----IMVSMVEAGELGGVLDEVLNRLAVHFEKEHKLNEKVKSALVYPA 174 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 +I V+ ++ F P +M + N LL Sbjct: 175 ---VVIAMAALSVTFILTFVFPTFMTLFNNLKVELPLLTRVLL 214 Score = 40.9 bits (94), Expect = 0.075, Method: Composition-based stats. Identities = 13/134 (9%), Positives = 38/134 (28%), Gaps = 5/134 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 ++ VR G+P+ A+ V+ +++ + S+ + + Sbjct: 269 AIARFSRMLGTLVRGGVPIISALDVVKKTTANWTM-----IKALTSAQASIRDGLGLAAP 323 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + G L + L ++ + + +E + Sbjct: 324 LGASSIFTPMVVQMVAIGEETGELDKMLEKIADFYESDVDDMVSRLSSMLEPLLIGILGA 383 Query: 135 SLPFCVSTLVYFTS 148 + V +V Sbjct: 384 VIGLIVIAVVLPLF 397 >gi|167584966|ref|ZP_02377354.1| type II secretion system protein [Burkholderia ubonensis Bu] Length = 324 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 70/162 (43%), Gaps = 4/162 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + I R +DFP+ALD++ V AGL + A+ + + S V SE ++ Sbjct: 156 LSRRIASRQRVIFEDFPDALDLLTVCVEAGLSLDSALLKVCEELQFRSPIVASELDLMLL 215 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + ++++ F ++ + G ++ ++L LS +LR R+ M+A Sbjct: 216 EMRSGFTKEAALRNLALRTGVEDIESFCAMLIQADRFGTSIGDSLRVLSDMLRTRRRMRA 275 Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158 + +A + I P ++ L+ +L+ Sbjct: 276 EERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRILLPT 317 >gi|167843646|ref|ZP_02469154.1| general secretion pathway protein F [Burkholderia pseudomallei B7210] Length = 405 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 69/188 (36%), Gaps = 17/188 (9%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + + +R + + AGLP+ +A+AV+ Q+ D +R + Sbjct: 59 LGRKLSQREQAI------LTRQLASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEV 112 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SL+ ++++ R + + + G L L+ L+ + +R +K K+ Sbjct: 113 LGGHSLANALTQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEERNALKQKI 167 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIM 177 I + V+ L+ + P +NV + + +L + A + Sbjct: 168 LLAFTYPAIVTVIAFGI---VTFLLSYVVPQVVNVFASTKQQLPVLTIVMMALSDFVRHW 224 Query: 178 VMRLMINF 185 ++I Sbjct: 225 WWAILIGI 232 >gi|126441326|ref|YP_001057064.1| general secretion pathway protein F [Burkholderia pseudomallei 668] gi|254184075|ref|ZP_04890666.1| general secretion pathway protein F [Burkholderia pseudomallei 1655] gi|126220819|gb|ABN84325.1| general secretion pathway protein F [Burkholderia pseudomallei 668] gi|184214607|gb|EDU11650.1| general secretion pathway protein F [Burkholderia pseudomallei 1655] Length = 405 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 69/188 (36%), Gaps = 17/188 (9%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + + +R + + AGLP+ +A+AV+ Q+ D +R + Sbjct: 59 LGRKLSQREQAI------LTRQLASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEV 112 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SL+ ++++ R + + + G L L+ L+ + +R +K K+ Sbjct: 113 LGGHSLANALTQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEERNALKQKI 167 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIM 177 I + V+ L+ + P +NV + + +L + A + Sbjct: 168 LLAFTYPAIVTVIAFGI---VTFLLSYVVPQVVNVFASTKQQLPVLTIVMMALSDFVRHW 224 Query: 178 VMRLMINF 185 ++I Sbjct: 225 WWAILIGI 232 >gi|329943876|ref|ZP_08292147.1| bacterial type II secretion system protein F domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328531582|gb|EGF58418.1| bacterial type II secretion system protein F domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 292 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 61/139 (43%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R+ + D P+ LD++ +VR+G+ AV + P+ E R I + LG++ Sbjct: 142 RRSQQIDRDLPDFLDVLSVTVRSGMSFRPAVERVSSFHEGPLAEEMRGAIYSMRLGVTRR 201 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + V+ F + +LG L++AL ++S +R + + + A + Sbjct: 202 DAFIAARDNSRSENVAIFVSAFLQAEELGTPLADALVDISSEIRRERAQQVRRAAARAQP 261 Query: 127 KASAWIIGSLPFCVSTLVY 145 K + + + L+ Sbjct: 262 KIAIVVTTMILPATLILIL 280 >gi|332854395|ref|ZP_08435347.1| type IV fimbrial assembly protein PilC [Acinetobacter baumannii 6013150] gi|332867626|ref|ZP_08437758.1| type IV fimbrial assembly protein PilC [Acinetobacter baumannii 6013113] gi|332728071|gb|EGJ59462.1| type IV fimbrial assembly protein PilC [Acinetobacter baumannii 6013150] gi|332733820|gb|EGJ64967.1| type IV fimbrial assembly protein PilC [Acinetobacter baumannii 6013113] Length = 408 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 17/177 (9%), Positives = 49/177 (27%), Gaps = 15/177 (8%) Query: 1 MKHLIKKRTAKFL---------DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51 ++ + +KR D + ++AG+P+ ++ +P E Sbjct: 47 VRTIREKRKNILEGLFKKKVTTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMRE 106 Query: 52 FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 + G + + ++ + ++ + + G L L ++ Sbjct: 107 VVLGIKGEVEGGSTFASALRKYPQH-----FDNLFCSLVESGEQSGALETMLDRVAIYKE 161 Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 + +K K++ + + + V D + V Sbjct: 162 KSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVV 218 Score = 37.8 bits (86), Expect = 0.75, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 40/129 (31%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG+P+ DA+ G +++ + ++ E G L ++ R Sbjct: 280 RTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVATGQQLQFAMRVSNR----- 334 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + + G L L ++ + + ME A + + Sbjct: 335 -FPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGL 393 Query: 140 VSTLVYFTS 148 V + Sbjct: 394 VIAMYLPIF 402 >gi|332158911|ref|YP_004424190.1| hypothetical protein PNA2_1271 [Pyrococcus sp. NA2] gi|331034374|gb|AEC52186.1| hypothetical protein PNA2_1271 [Pyrococcus sp. NA2] Length = 305 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 53/154 (34%), Gaps = 1/154 (0%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 I KR + P+A + S+RAG+ S+A+ + + EF R + Sbjct: 85 NFRIIKRIEEMERALPDAFFYLAGSLRAGVSFSEALEELSTAKFGALTREFMRTVAEMKR 144 Query: 62 GLSLSESISRMV-RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +++ R + +I + G +++ L + +R+ +K + + Sbjct: 145 GRPTVDALRAFALRNKRSPIIYRSMMIIIEALERGAPMADVLVAVGNDVREILRIKNERK 204 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 A + G V ++ + Sbjct: 205 ASTGMQMMFFLTSGGFVGPFIVAVVSNIAKFITL 238 >gi|320449795|ref|YP_004201891.1| type 4 fimbrial assembly protein PilC [Thermus scotoductus SA-01] gi|320149963|gb|ADW21341.1| type 4 fimbrial assembly protein PilC [Thermus scotoductus SA-01] Length = 406 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 17/160 (10%), Positives = 50/160 (31%), Gaps = 5/160 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D + + AGL + +++++ Q+ + E + + + ++ Sbjct: 65 KDLAIFSRQLATMLGAGLTLLQSLSILERQTENKKFREIIKKVR-----TDIEGGMAFSD 119 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + S + + G L L L+ L ++ K+++ Sbjct: 120 ALAKHKLFSRLYVNLVRAGETSGGLDLILDRLATFLEKDLELRGKIRSAMTYPVIVFVFA 179 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + + + T + + L ++ +A + L Sbjct: 180 VGVAYFLLTGIVPQFAQILTDLGSELPLLTRFLIALSGFL 219 >gi|119716451|ref|YP_923416.1| type II secretion system protein [Nocardioides sp. JS614] gi|119537112|gb|ABL81729.1| type II secretion system protein [Nocardioides sp. JS614] Length = 310 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 63/173 (36%), Gaps = 5/173 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET-QHLGLSLSESISRM 72 + + + AG + A+ + + P+ E ++ + S + + Sbjct: 107 EALEEWTRSLSGKLTAGQSLRSALIKSLQSAPAPIEREVGLMVSRLWNNTASTEDVLRAF 166 Query: 73 VRYMPLQEVSFFSTVISV--QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + ++ + + + LS+AL L+ + + ++ A + + +A Sbjct: 167 AEDLNDSTGDVVASQLILAASGRGQAGLSKALDALAETVASDVRARRQIAADQAKPRTTA 226 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + V ++ FT Y+ P G ++L V + + ++ MR M Sbjct: 227 RTVTVITLGVLGMLAFTG-DYIEP-YGSPLGQVILAVLLSAYVATLLWMRRMA 277 >gi|325916237|ref|ZP_08178518.1| type II secretory pathway, component PulF [Xanthomonas vesicatoria ATCC 35937] gi|325537531|gb|EGD09246.1| type II secretory pathway, component PulF [Xanthomonas vesicatoria ATCC 35937] Length = 230 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 54/166 (32%), Gaps = 9/166 (5%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSE 67 D + +++G+P+ A+ +I GQ + +R+ ++ G SL E Sbjct: 67 KKVTAKDISFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRNMVGQIRADIEGGSSLHE 126 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++SR + + G L L ++ + + +K K++ Sbjct: 127 AVSRHPVQ-----FDELYRNLVRAGEGAGVLETVLDTIATYKENIEALKGKIKKALFYPA 181 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 ++ + L+ F P + +V M Sbjct: 182 ---MVVAVALLVSAILLIFVVPQFEDVFKGFGAELPAFTQMIVNMS 224 >gi|154151443|ref|YP_001405061.1| type II secretion system protein [Candidatus Methanoregula boonei 6A8] gi|153999995|gb|ABS56418.1| type II secretion system protein [Methanoregula boonei 6A8] Length = 349 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 24/175 (13%), Positives = 61/175 (34%), Gaps = 5/175 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + R PN + +G+ + +AV ++ G + R++ Sbjct: 124 LDFREQSRMRNLETALPNFFRDLAGMNDSGMTLPNAVHLVAGAEYGTLSPHIRKLDNEMS 183 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ E++ R + + +I+ S+ GG++SE L + + N+ + + Sbjct: 184 WGVGFVEALYRFGKSLGTPLADRSVDLIAKASKAGGDISEVLRAAANDTFEVVNLAQERR 243 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + I+ ++ +++ + G AA+ +G Sbjct: 244 NNML---IYVIIVIVSFTVFLFVIAVLVSSFLSTMAT--AGTAAQVTAASSKFMG 293 >gi|120553690|ref|YP_958041.1| type II secretion system protein [Marinobacter aquaeolei VT8] gi|120323539|gb|ABM17854.1| type II secretion system protein [Marinobacter aquaeolei VT8] Length = 409 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 56/171 (32%), Gaps = 6/171 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLS 66 R A LD+ + +AG+P+ + + + S + + G +++ Sbjct: 61 RKAVTLDELIVFCRQMHALTKAGIPLIRTMRGLAETTRSPVLAEVLEDITNRLEGGTTMA 120 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + S + + G L ++ LS IL ++ K +V+ Sbjct: 121 TAMQAHPK-----VFSELFIAMIHVGENTGMLDDSFKRLSEILELERDTKRRVKQALRYP 175 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + V+ LV L D + V + L+G Sbjct: 176 TFVVIALLAALMVVNFLVIPRFASVFAKLGADLPFLTHVLVGTSNFLLGYW 226 Score = 43.2 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 15/132 (11%), Positives = 42/132 (31%), Gaps = 5/132 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 ++AG+PV+ A+ V+ + + + + L + S + Sbjct: 272 LSRFARNFATMLKAGMPVTHALTVVADATDNAWIGSHIK-----DMRLGIERGESLLRTA 326 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + + G++ + L N++ + + K A S+E + Sbjct: 327 RHSEMFTPLILQMIAVGEETGSVDDMLNNVADFYDEDVDYGLKRLAESIEPILIVAMGVL 386 Query: 136 LPFCVSTLVYFT 147 + + Sbjct: 387 VLILALGVFLPI 398 >gi|84496010|ref|ZP_00994864.1| putative integral membrane protein [Janibacter sp. HTCC2649] gi|84382778|gb|EAP98659.1| putative integral membrane protein [Janibacter sp. HTCC2649] Length = 288 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 65/180 (36%), Gaps = 4/180 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 R + + + AG+ + A+ + + DP+R E R+ + Sbjct: 94 ASARIDRLE-AMEEWTRSLSGVLTAGVGLEQALIATLRSTPDPIRPEVTRLASRLRARWT 152 Query: 65 LSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 +++ + + + + + G L+ L L+ + + +++A Sbjct: 153 TEDALRAFADDLDDATGDVVAANLILGARRRGAGLASVLDALAESVAADVRARREIEADR 212 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + +A+A + + V + T Y+ P G +LL + + + ++ MR M Sbjct: 213 AKPRATARWVTLITISVLAFLALTG-QYVAP-FGTPLGQVLLVLLLSLYVATLVWMRRMT 270 >gi|325928500|ref|ZP_08189691.1| type II secretory pathway, component PulF [Xanthomonas perforans 91-118] gi|325541217|gb|EGD12768.1| type II secretory pathway, component PulF [Xanthomonas perforans 91-118] Length = 385 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 18/171 (10%), Positives = 55/171 (32%), Gaps = 6/171 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + +++G+P+ ++ +I + ++ ++ G SL E++S+ Sbjct: 45 KEIAFFSRQMATMMKSGVPIVGSLEIIGNGHKNPRMKQMVGQIRTDIEGGSSLHEAVSKH 104 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L ++ + + +K K++ + Sbjct: 105 PVQ-----FDELYRNLVKAGEGAGVLETVLDTIASYKENLEALKGKIKKALFYPAMVVAV 159 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + V + L V A+ ++ + L++ Sbjct: 160 ALLVSSILLIWVVPQFEDVFKGFGAELPAFTQLIVNASRFMVSYWWLLLLV 210 Score = 34.7 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 17/131 (12%), Positives = 46/131 (35%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77 + +AG+P+ +A+ ++ G + + V R+ E +G ++ S+ ++ + Sbjct: 254 FARTTAVTFKAGVPLVEALGIVAGATGNSVYEKAVLRMREDVSVGYPVNVSMKQVNLFPH 313 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++ + G L L ++ N + +E +I + Sbjct: 314 M------VIQMTAIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLIEPLIMVFIGTVVG 367 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 368 GMVIGMYLPIF 378 >gi|260914307|ref|ZP_05920776.1| Flp pilus assembly protein TadC [Pasteurella dagmatis ATCC 43325] gi|260631408|gb|EEX49590.1| Flp pilus assembly protein TadC [Pasteurella dagmatis ATCC 43325] Length = 285 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 67/156 (42%), Gaps = 4/156 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--TQ 59 ++K + K + D P +D++ +V+ G+ + A+ + ++ + Sbjct: 128 NSILKSKIKKIMVDLPGFIDLVAVNVQTGISIDAALKQVAIDFKKLNPDLTYVMLRIIRK 187 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 LS ++ + +P EV F +V+ G ++ L LS +R+ + + + Sbjct: 188 SEITGLSSALQDLSISLPTTEVRMFCSVLQQSLNFGSSIYSHLIQLSADIRELQLLTIEE 247 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + ++ AK S +I + F + L+ +PG M V Sbjct: 248 KLGTLAAKMSIPLILFIMFPIIILI--LAPGIMRVF 281 >gi|114321539|ref|YP_743222.1| general secretion pathway protein F [Alkalilimnicola ehrlichii MLHE-1] gi|114227933|gb|ABI57732.1| general secretion pathway protein F [Alkalilimnicola ehrlichii MLHE-1] Length = 404 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 59/186 (31%), Gaps = 24/186 (12%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + VR+GLP+ D + + Q+ ++S V G +L++ + Sbjct: 66 DLALITRQMATLVRSGLPLEDVLRTVSRQTDKPRLKSLMLAVRNRVLEGHTLAQGLGDFP 125 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + G+L L L+ R+ M+ KVQ + Sbjct: 126 -----HVFPDIYRTTVAAGEKSGHLDIVLERLAEYTEGRQQMRQKVQMALFYPI---ILT 177 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG---------------VAAAFMLIGIMV 178 TL+ + P + V + + LL ++G++V Sbjct: 178 VMAIGVTLTLLTYVVPEVVGVFDHIGQDLPLLTQSLIVTSDFMRDYALYGLIGGIVGLLV 237 Query: 179 MRLMIN 184 + ++ Sbjct: 238 LARILR 243 >gi|157377486|ref|YP_001476086.1| general secretion pathway protein F [Shewanella sediminis HAW-EB3] gi|157319860|gb|ABV38958.1| general secretion pathway protein F [Shewanella sediminis HAW-EB3] Length = 407 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 62/183 (33%), Gaps = 18/183 (9%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 + + V AGLPV +A+ + Q D + S V G SL++S++ Sbjct: 67 AELALITRQVATLVAAGLPVEEALKAVGQQCEKDRLASMIMAVRSRVVEGYSLADSMAEF 126 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G+L L L+ R +K+K+ + + Sbjct: 127 P-----HIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRHQLKSKMTQAMIYPVVLTVV 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA------------AAFMLIGIMVMR 180 S+ + V G + + LL +A ++IG ++++ Sbjct: 182 AISVIAILLAAVVPEVVGQFEHMGQELPWTTLLLIASSDFVRDYGLLVLGVIVIGFVLLK 241 Query: 181 LMI 183 ++ Sbjct: 242 RLL 244 >gi|5670332|gb|AAD38174.2|AF152598_3 TadC [Aggregatibacter actinomycetemcomitans] gi|26000717|gb|AAN75213.1| TadC [Aggregatibacter actinomycetemcomitans] Length = 288 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 71/158 (44%), Gaps = 6/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 + ++K + K ++D +D++ +V+ G+ + A+ + + + R+I Sbjct: 130 IGSILKAKIKKIMNDLAGFIDLVAVNVQTGISIEAALKQVATDFKTLNPDLTYVMLRIIR 189 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + +S+++ + +P E+ F TV+ G ++ L LS +R+ + + Sbjct: 190 KSEI-TGMSQALQDLSVSLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSTDIREIQLLAI 248 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + ++ AK S +I + F + L +PG M V Sbjct: 249 EEKLGTLSAKMSIPLILFIMFPIIIL--TLAPGVMKVF 284 >gi|296129086|ref|YP_003636336.1| Type II secretion system F domain protein [Cellulomonas flavigena DSM 20109] gi|296020901|gb|ADG74137.1| Type II secretion system F domain protein [Cellulomonas flavigena DSM 20109] Length = 309 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 57/146 (39%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + +R A+ L + P +++ +V AG + A+ +V Q+ + E R + Sbjct: 154 LGRQVARREARLLAEMPTVTELLALAVSAGEGATGALERVVRQTRGELADELARTLAEAR 213 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L+ ++ + L ++ F+ ++V + G L++ L ++ +R+ Sbjct: 214 AGAPLTTALQTLADRTGLPALARFAEGVAVAVERGSPLADVLRAQAQDVREEGRRALMQT 273 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146 E ++ + F Sbjct: 274 GGRKEVLMMVPVVFLILPVTVLFAVF 299 >gi|14590541|ref|NP_142609.1| hypothetical protein PH0654 [Pyrococcus horikoshii OT3] gi|3257062|dbj|BAA29745.1| 308aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 308 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 21/153 (13%), Positives = 52/153 (33%), Gaps = 1/153 (0%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 I +R + P+A + S+RAG+ S+A+ + + EF R + Sbjct: 88 NFRIVRRIEEMERALPDAFFYLAGSLRAGVSFSEALEELSTAKFGALTREFMRTVAEMKR 147 Query: 62 GLSLSESISRMV-RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +++ R + ++ + G +++ L + +R+ +K + + Sbjct: 148 GRPTVDALRAFALRNKKSLVIYRSMMIVIEALERGAPMADVLIAVGNDVREILRIKKERK 207 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153 A + G + ++ Sbjct: 208 ASTGMQMMFFLTSGGFVGPFIVAIVSKISEFIA 240 >gi|238924552|ref|YP_002938068.1| type II secretion system protein [Eubacterium rectale ATCC 33656] gi|238876227|gb|ACR75934.1| type II secretion system protein [Eubacterium rectale ATCC 33656] Length = 404 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 23/165 (13%), Positives = 51/165 (30%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRM 72 D V AG+ + D + ++ Q+ + V R V G +LS+ + + Sbjct: 63 RDLSVFCRQFTSMVNAGVTILDTLDMLSDQTENKVMAKAIRGVHAEIQKGETLSDGLKKY 122 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P + + G + A +S + ++ ++ + Sbjct: 123 PNVFP-----DIMVSMVAAGEASGKIDVAFDRMSAHFEKSAKLNGMIKKAAVYPIIVVIV 177 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++ + V + N L + G VA + + G Sbjct: 178 AIAVVIVMLVKVIPSYSEMFNDLGTELPGITKAVVAMSDFVTGYW 222 Score = 45.9 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 19/135 (14%), Positives = 50/135 (37%), Gaps = 7/135 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + V +GLP+ +A+ + + + + + E G+ LSE I+ + P+ Sbjct: 273 RTLSTLVYSGLPMIEALGITADTMKNALYKKALKNAREEVSKGVPLSEPITACGLFPPM- 331 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + ++ + G+L L L+ + + + ++E + + Sbjct: 332 -----VSHMTKIGEETGDLEGMLTRLADYYDEEVELATQTVMAAIEPMIILVLALIVGVL 386 Query: 140 VSTLVYFTSPGYMNV 154 V+ ++ Y + Sbjct: 387 VAAVMAPMLSMYQAM 401 >gi|27365656|ref|NP_761184.1| type II/IV secretion system protein TadC [Vibrio vulnificus CMCP6] gi|27361804|gb|AAO10711.1| Type II/IV secretion system protein TadC, associated with Flp pilus assembly [Vibrio vulnificus CMCP6] Length = 293 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 63/148 (42%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIE 57 + + K P+A+D++V V +GL ++ A + + P+ +FR Sbjct: 134 LNLNADRYRKKLKQSAPDAIDLLVLCVESGLSLNRAFERVARYLQEQHAPMAEQFRVTSA 193 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L +++++ + + E+ +T +++ + G L++ L +S R ++ + Sbjct: 194 ELDLLNDRTQALNNLSWRTGIPELHTLATTLTMADKYGSPLADTLRQISEDARRQRALDI 253 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A + K + + + + +V Sbjct: 254 EERAGKLPGKITLIQMTMIMLPMLVMVI 281 >gi|255319718|ref|ZP_05360926.1| pilin biogenesis protein [Acinetobacter radioresistens SK82] gi|262380000|ref|ZP_06073155.1| general secretion pathway protein F [Acinetobacter radioresistens SH164] gi|255303247|gb|EET82456.1| pilin biogenesis protein [Acinetobacter radioresistens SK82] gi|262298194|gb|EEY86108.1| general secretion pathway protein F [Acinetobacter radioresistens SH164] Length = 408 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 19/168 (11%), Positives = 51/168 (30%), Gaps = 8/168 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQ 59 ++ L+KKR + D + ++AG+P+ ++ +P E + Sbjct: 58 LEGLMKKRVSTL--DITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMREVVLGIKAEV 115 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + + ++ + + + + G L L ++ + +K K+ Sbjct: 116 EGGNTFAGALRKYPQ-----YFDNLFCSLVESGEQSGALETMLDRVAIYKEKSELLKQKI 170 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 + + + + V + D + V Sbjct: 171 KKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTQMVV 218 Score = 37.4 bits (85), Expect = 0.95, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 43/129 (33%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG+P+ DA+ G +++ + ++ E G L ++ R+ P+ Sbjct: 280 RTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVATGQQLQFAMRASNRFPPM- 338 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + + G L L ++ + + ME A + + Sbjct: 339 -----AVQMVAIGEESGALDAMLDKVATHFENEVDNAVDGLTSMMEPLIMAILGVLVGGL 393 Query: 140 VSTLVYFTS 148 V + Sbjct: 394 VIAMYLPIF 402 >gi|303238717|ref|ZP_07325250.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] gi|302593836|gb|EFL63551.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] Length = 292 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 58/156 (37%), Gaps = 4/156 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRSEFRRVIET 58 + +KKR DFP+ L+ + + AG+ V A IV + + + E + Sbjct: 136 LNEKVKKRRTSMQLDFPDFLNKLTLLINAGMTVQRAWEKIVTDNKKNSVLYEELSIAVAD 195 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G S + + + E++ F +V+ + G ++ L + M+ + Sbjct: 196 IRAGKSEMSAYEDFAKRCRIPEITKFVSVVLQNIKKGNTELVSILRL--QASECWEMRKR 253 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 E ++ + + V+ L+ T P + Sbjct: 254 AATRLGEEASTKMLFPMMIMFVAILIIVTVPAIFAM 289 >gi|294495979|ref|YP_003542472.1| type II secretion system F domain protein [Methanohalophilus mahii DSM 5219] gi|292666978|gb|ADE36827.1| Type II secretion system F domain protein [Methanohalophilus mahii DSM 5219] Length = 741 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 68/154 (44%), Gaps = 3/154 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +R K + P+ L + + G+ + D++ ++ + +D + E ++V G+ Sbjct: 519 KKNRRKKKLEQNIPDLLKKLASTNETGMTLQDSIKLMSRKETDTLSKEIKKVWRDISWGV 578 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++++S+ R + Q V+ T+I+ ++ G++ + L SR ++MK + S Sbjct: 579 NINDSLVRFANRLRTQVVARSFTLITKANESSGDIGQVLLVASRDASSEQDMKRER---S 635 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 M II ++Y S ++ + + Sbjct: 636 MSMMIYIVIIYIAFLVFVGVIYVISTTFLTEMAD 669 Score = 55.9 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 19/186 (10%), Positives = 62/186 (33%), Gaps = 7/186 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQH 60 +R P A+ + R G+ + D + + V E +++ Sbjct: 201 FQAGERKNNIDQQLPYAVTFMYALTRGGMNILDVFKSLAKAEDTYGEVAVEVDTIVKDME 260 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + +++ + P + GG++++ + S + + K Sbjct: 261 YFGHDIRTALANISSTTPSDRFQDLIYNLVTIIDSGGDIAKYFQDKSDQYLQKSMVDQKG 320 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ + +++ + + ++ +++ M+ + A + IG ++ Sbjct: 321 FLETLALLSESYVTAFVAGPLFIIIMGVM----MIIMGSGSKSMVYAIIYAVLPIGSLMF 376 Query: 180 RLMINF 185 +MI+ Sbjct: 377 VVMISI 382 >gi|323702301|ref|ZP_08113967.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM 574] gi|323532791|gb|EGB22664.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM 574] Length = 409 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 61/167 (36%), Gaps = 9/167 (5%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLS 66 R + + + AG+P+ A+ ++ Q+ E V+E G +L+ Sbjct: 62 RKKVKIKELAVFCRQFATIIAAGIPILQALNILARQAESRRLRETITGVVEQLESGRTLA 121 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ES+ R P + ++GG L +AL L+ +++ K+++ Sbjct: 122 ESLKRYRDVFPN-----IFISMIEAGEVGGVLDKALTRLADHFEKEHDIREKIKSAMTYP 176 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 II V+ L+ F P ++ +L + L + Sbjct: 177 VL---IICLAICAVTALLTFVLPKFIQMLNDMHVELPLPTRIIIAVS 220 Score = 40.9 bits (94), Expect = 0.087, Method: Composition-based stats. Identities = 16/133 (12%), Positives = 40/133 (30%), Gaps = 5/133 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + V AG+P+ A+ +V ++ + + LS + Sbjct: 276 FCRTLSTLVHAGVPILTALE-VVKKTCGNQVISNALTKAEESVREGLSIAEP----LERS 330 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + T + + G L L ++ N + +E ++ + F Sbjct: 331 KVFPPMVTRMMAIGEDTGTLDILLERIAVFYERDVNDMVARLSSLLEPILIVFMGVIIGF 390 Query: 139 CVSTLVYFTSPGY 151 V +++ + Sbjct: 391 IVISMLLPMFKVF 403 >gi|1174586|sp|P45793|TAPC_AERHY RecName: Full=Type IV pilus assembly protein tapC gi|663117|gb|AAC43997.1| TapC [Aeromonas hydrophila] gi|1588984|prf||2209417C leader peptidase IV Length = 413 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 16/158 (10%), Positives = 44/158 (27%), Gaps = 6/158 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQ 79 I + AG+P+ ++ +I E ++ G +SE++ R R+ Sbjct: 80 RQITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEALRRHPRH---- 135 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + G L ++ + +K+K++ + + Sbjct: 136 -FDALYCDLVEAGEQSGALETIYDRIATYREKSEALKSKIKKAMFYPAMVILVAIVVTSI 194 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + V + + + + Sbjct: 195 LLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQHWW 232 >gi|399798|sp|P31743|GSPF_AERHY RecName: Full=General secretion pathway protein F gi|809648|emb|CAA47127.1| ExeF [Aeromonas hydrophila] Length = 388 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 24/191 (12%), Positives = 53/191 (27%), Gaps = 19/191 (9%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66 R + + V AGL + +A+ + Q +RS V G SL+ Sbjct: 42 RRGASTSELALITRQLATLVGAGLTIEEALRAVAEQCEKAHLRSLVATVRSKVVEGYSLA 101 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ + + G+L + L L+ R++M+ K+ + Sbjct: 102 DSLGAFP-----HVFDQLFRSMVAAGEKSGHLEKVLNRLADYTEQRQHMRTKLLQAMIYP 156 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA-------------AAFML 173 + + + T V + + + Sbjct: 157 IVLTLVAVGVISILLTAVVPKVVAQFEHMGQQLPATTRFLIGTSELMQHYGLWFLLLLFI 216 Query: 174 IGIMVMRLMIN 184 G + + + Sbjct: 217 GGFVWRWWLTD 227 >gi|269103693|ref|ZP_06156390.1| general secretion pathway protein F/type II secretory pathway component PulF [Photobacterium damselae subsp. damselae CIP 102761] gi|268163591|gb|EEZ42087.1| general secretion pathway protein F/type II secretory pathway component PulF [Photobacterium damselae subsp. damselae CIP 102761] Length = 406 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 59/172 (34%), Gaps = 11/172 (6%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66 R ++ I V+A +P+ + + + Q+ +++ V G +L+ Sbjct: 60 RRGISTNELALITRQIATLVQASMPLEECLKAVAEQNEKPRLKNILLAVRSRVVEGYTLA 119 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S++ + + G+L L L+ +R+ M++K+Q + Sbjct: 120 DSMAEFP-----HIFDQLFRAMVAAGEKSGHLDAVLNRLADYAENRQQMRSKLQQAMIYP 174 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + VS L+ P ++ + G L + + V Sbjct: 175 T---MLTLIAISVVSFLLATVVPKIVDQFVRT--GQPLPTITEVLLAASNFV 221 >gi|229817341|ref|ZP_04447623.1| hypothetical protein BIFANG_02603 [Bifidobacterium angulatum DSM 20098] gi|229785130|gb|EEP21244.1| hypothetical protein BIFANG_02603 [Bifidobacterium angulatum DSM 20098] Length = 425 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/179 (10%), Positives = 50/179 (27%), Gaps = 14/179 (7%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 DF + V AG+ + A+ +++ Q+ + + + S S+ + Sbjct: 82 KDFAVTSRQLATMVSAGVSLIRALNIVIEQTRNEKLR---TALAECAAKIEAGSSFSQAM 138 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + GG L ++L ++ ++ ++++ I Sbjct: 139 EENEDDIFPPVMVYMVRAGETGGFLDKSLITVADSFEADVRLQGQIKSALAYPVVVLCIA 198 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA-----------AAFMLIGIMVMRL 181 +L + + + + VA LI + Sbjct: 199 LALVAVMLLTIVPMFDNMYKSMNATLPLITQIMVAMGKVAPVAIPLVIVGLIAFFMFWR 257 Score = 39.3 bits (90), Expect = 0.22, Method: Composition-based stats. Identities = 15/137 (10%), Positives = 40/137 (29%), Gaps = 5/137 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + + +G+P+ +A+ ++ S + V ++ + + Sbjct: 287 ALARFCNNFSSMLASGVPILNALDIVGSTSGNYVLD-----TASKRVSNLVERGYRLSDS 341 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 T + + G + + LA+ + + AK +E + Sbjct: 342 MASENVFPTMLTQMVSIGEDSGAIDQMLASAGKAYDEEAQSMAKQLTSLLEPLMILVLGV 401 Query: 135 SLPFCVSTLVYFTSPGY 151 + F V L + Sbjct: 402 VVGFMVLGLYMPMFSMF 418 >gi|167560917|ref|ZP_02353833.1| general secretion pathway protein F [Burkholderia oklahomensis EO147] gi|167571807|ref|ZP_02364681.1| general secretion pathway protein F [Burkholderia oklahomensis C6786] Length = 405 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 69/190 (36%), Gaps = 17/190 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + + +R + + AGLP+ +A++V+ Q+ D +R + Sbjct: 59 LGRKLSQREQAI------LTRQLASLLIAGLPLDEALSVLTEQAERDYIRELMAAIRAEV 112 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SL+ +++ R + + + G L L+ L+ + +R +K K+ Sbjct: 113 LGGHSLAVALAEHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEERNALKQKI 167 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIM 177 I + V+ L+ + P +NV + + LL + A + Sbjct: 168 VLAFTYPAIVTVIALGI---VTFLLSYVVPQVVNVFASTKQQLPLLTIVMMALSDFVRHW 224 Query: 178 VMRLMINFDV 187 ++I V Sbjct: 225 WWAILIGIAV 234 Score = 34.7 bits (78), Expect = 5.3, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 38/130 (29%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ S+ I G +LS +++ + + P Sbjct: 274 FASTLAILTAAGVPILRALQAAGETLSNRAMRGNIEDAIVRVREGSALSRALNNVKTFPP 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+++ L S + +E + G + Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRASEGESRELERRTMFLTSLLEPLLILAMGGIVL 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 VIVLAVMLPI 397 >gi|320531262|ref|ZP_08032241.1| type II secretion system F domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320136529|gb|EFW28498.1| type II secretion system F domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 317 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 53/146 (36%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + +R ++ P+ ++++ +V AG A+ +V + E + Sbjct: 162 LSRAVARRLSRIEAQLPDIVELLALAVGAGQGPVPAIERVVALGRGDLIDELGATLTDIR 221 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G LS ++ RM R + V+ I V + G L++ L + + +R+ + Sbjct: 222 SGTVLSTALDRMERRVGSVHVTRLCEAIIVALERGTPLADVLRSQATDVREAARQDLMEE 281 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146 E ++ + F Sbjct: 282 GGRREIAQMVPVVFLVLPITVVFALF 307 >gi|182412504|ref|YP_001817570.1| type II secretion system protein [Opitutus terrae PB90-1] gi|177839718|gb|ACB73970.1| type II secretion system protein [Opitutus terrae PB90-1] Length = 407 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 24/175 (13%), Positives = 50/175 (28%), Gaps = 4/175 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 K+ L + + + AGLP+ + + Q+ DP +I + Sbjct: 55 KKAKKYKLPLGELAIFTQQLASLLIAGLPLVQCLEALQDQTEDPCFRI---IIRDVRADI 111 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S S S V+ P + + + G L+E L ++ + KV++ Sbjct: 112 SSGNSFSSSVKKFPNA-FNSLFVSMVEAGEASGGLAEILGKVASYFESTVRLTKKVKSAM 170 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 A + +L + V + + + Sbjct: 171 TYPIAVIGLAVALVNVLLIFVIPVFASMFADFGAKLPAPTQALIDLSEFMKAYWW 225 >gi|119944257|ref|YP_941937.1| type II secretion system protein, type IV pilus biogenesis protein PilC [Psychromonas ingrahamii 37] gi|119862861|gb|ABM02338.1| type II secretion system protein, type IV pilus biogenesis protein PilC [Psychromonas ingrahamii 37] Length = 410 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 20/160 (12%), Positives = 45/160 (28%), Gaps = 6/160 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 I + AG+P+ + +I S R + + G LS+++ Sbjct: 77 RQIATMLGAGVPLVQGLQLIAKSSEKPASRKLMSTISQEVATGTPLSQTLR-----GHSL 131 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + G L +S + +K+K++ A + G + Sbjct: 132 YFDDLYCDLVYAGEQSGALDTIYDRISIYKEKSEILKSKIKKAMFYPAAVLTVAGLVTLL 191 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + V + L + + + M Sbjct: 192 LLLFVIPQFKDIFEGFGAELPAFTLFVLGISDFVQSYWYM 231 >gi|295109281|emb|CBL23234.1| Type II secretory pathway, component PulF [Ruminococcus obeum A2-162] Length = 404 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/157 (12%), Positives = 62/157 (39%), Gaps = 9/157 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 D V +AG+P+ +A+ ++ Q+ + ++ V+ G +L++S++ + Sbjct: 63 RDLSVFCRQFVSITQAGVPMKEALQMMTEQTENKWLKKATADVLVNVEKGNTLADSMASI 122 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P + + G+L + ++ +KA ++ ++ + Sbjct: 123 PDIFPP-----MLVNMVAAGESSGSLEMSFNRMATHFEKEAKLKATIRKATIYPI---IL 174 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 I ++ ++ ++ + P ++++ + L + Sbjct: 175 ICAVIGVIAVMLLYVIPIFIDMFADLDVEMPALTMGV 211 Score = 42.0 bits (97), Expect = 0.042, Method: Composition-based stats. Identities = 12/135 (8%), Positives = 40/135 (29%), Gaps = 5/135 (3%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + AG+ ++ + + ++ + + + + Sbjct: 269 AQFARTMSTLMAAGISTTECLDTVSKIINNIHYKNALQKAKEEVMKGIPLSEPLAASEVF 328 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 P ++ + GN+ E L+ L+ + + + +ME ++ + Sbjct: 329 PP-----MVCHMTGIGEETGNMEEMLSKLADYYDEEVEITTQSVLAAMEPLIIVFMALIV 383 Query: 137 PFCVSTLVYFTSPGY 151 V ++ Y Sbjct: 384 GTLVIAVLMPIRSMY 398 >gi|87308908|ref|ZP_01091046.1| bacterial type II secretion system protein [Blastopirellula marina DSM 3645] gi|87288251|gb|EAQ80147.1| bacterial type II secretion system protein [Blastopirellula marina DSM 3645] Length = 321 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 69/161 (42%), Gaps = 2/161 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRSEFRRVIET 58 + R ++ P+ALD+I + AGLP+ ++ + + S + +++ Sbjct: 139 ISSQAAARVSRIQHALPDALDMITMTTTAGLPLQKSIKRVSDEMVRSHEDLACELMILDR 198 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 Q SL ++I + + + EV+ +++++ ++GG+++ A + + +R + A+ Sbjct: 199 QAETGSLGQAIQNFAKRLEVPEVNALASLVTQAQRIGGSVAGAFRDFADSIRRSRRQLAE 258 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159 + K +I L V L+ S + + Sbjct: 259 ERGNQNSIKLLIPVIFLLAPPVYILLLGPSVLRLQDFMGSG 299 >gi|134293926|ref|YP_001117662.1| general secretion pathway protein F [Burkholderia vietnamiensis G4] gi|134137083|gb|ABO58197.1| general secretion pathway protein F [Burkholderia vietnamiensis G4] Length = 405 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 22/183 (12%), Positives = 57/183 (31%), Gaps = 10/183 (5%) Query: 1 MKHLIKKR----TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRV 55 + ++R + + + AGLP+ ++++V+ Q+ + VR + Sbjct: 49 LNGARQRRLSLGRKLSQREQAIITRQLASLLVAGLPLDESLSVLSEQAEREYVRELMASI 108 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 G S + ++++ R + + + G L LA L+ + + Sbjct: 109 RAEVVGGHSFANALTQHPR-----DFPDIYRALVAAGEHTGKLGVVLARLADYIEQSNAL 163 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K K+ I + + + V ++ +A + + Sbjct: 164 KQKILLAFTYPGIVTLIAFGIVTFLLSYVVPQVANVFTSTKQQLPTLTVVMMALSGFVRH 223 Query: 176 IMV 178 Sbjct: 224 WWW 226 Score = 35.5 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 36/130 (27%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ S+ I G +LS +++ Sbjct: 274 FASTLGILTAAGVPILRALQAAGETLSNRAMRANVDDAIVRVREGSALSRALA------H 327 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G+++ L S + +E + G + Sbjct: 328 TKTFPPVLVHLIRSGEATGDVTTMLDRASEGESRELERRTMFLTSLLEPLLILAMGGVVL 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 VIVLAVMMPI 397 >gi|328954941|ref|YP_004372274.1| Type II secretion system F domain protein [Coriobacterium glomerans PW2] gi|328455265|gb|AEB06459.1| Type II secretion system F domain protein [Coriobacterium glomerans PW2] Length = 320 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 81/177 (45%), Gaps = 1/177 (0%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 K P A + ++ +G ++ + + + +PVR+EF R + G+S + ++ Sbjct: 145 KLASAMPEAFGALAIALGSGHSLAQGMRFVGSHAEEPVRTEFLRASFSIVCGMSATSALD 204 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 ++ +P + + + V + G L + LA S ++ DR + +++ + +A+ SA Sbjct: 205 ELLARLPAPGLDLVALALKVSQRTGAPLKDLLAEASEMVGDRIELVRRLEVKTAQARMSA 264 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 ++ +P ++ ++ S + L G + + A A M++R +++ + Sbjct: 265 RMVALMPVAMTCILALLSKDFQRGL-TTAPGTVSVVAALALNAAAWMIIRRIMDVRI 320 >gi|320156058|ref|YP_004188437.1| flp pilus assembly protein TadC [Vibrio vulnificus MO6-24/O] gi|319931370|gb|ADV86234.1| flp pilus assembly protein TadC [Vibrio vulnificus MO6-24/O] Length = 293 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 63/148 (42%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIE 57 + + K P+A+D++V V +GL ++ A + + P+ +FR Sbjct: 134 LNLNADRYRKKLKQSAPDAIDLLVLCVESGLSLNRAFERVARYLQEQHAPMAEQFRVTSA 193 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L +++++ + + E+ +T +++ + G L++ L +S R ++ + Sbjct: 194 ELDLLNDRTQALNNLSWRTGIPELHTLATTLTMADKYGSPLADTLRQISEDARRQRALDI 253 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A + K + + + + +V Sbjct: 254 EERAGKLPGKITLIQMTMIMLPMLVMVI 281 >gi|170782447|ref|YP_001710780.1| putative type II secretion protein protein [Clavibacter michiganensis subsp. sepedonicus] gi|169157016|emb|CAQ02189.1| putative type II secretion protein protein [Clavibacter michiganensis subsp. sepedonicus] Length = 274 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 69/173 (39%), Gaps = 3/173 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + +P+ +D +V +VRAG+ + DAVA + +R FR S + ++ + Sbjct: 96 EVWPDVVDHLVSAVRAGMGLPDAVASLAVAGPVVLRPAFREFASVHRTTGSFAVALDELK 155 Query: 74 RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G L + L L+R LRD ++++ +A +A + Sbjct: 156 EQLADPTADRILETLRMAREVGGTQLPDVLRGLARFLRDEAAIRSEAEARQSWVVNAAKL 215 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + P+ + L+ S + G +++ V + +M + Sbjct: 216 GVAAPWIILALLSTRSEAVAA--YDTAAGTVVIVVGLVVSAVAYRLMLALGRL 266 >gi|83721515|ref|YP_440569.1| general secretion pathway protein F [Burkholderia thailandensis E264] gi|167582886|ref|ZP_02375760.1| general secretion pathway protein F [Burkholderia thailandensis TXDOH] gi|167621026|ref|ZP_02389657.1| general secretion pathway protein F [Burkholderia thailandensis Bt4] gi|83655340|gb|ABC39403.1| general secretion pathway protein F [Burkholderia thailandensis E264] Length = 405 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 69/188 (36%), Gaps = 17/188 (9%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + + +R + + AGLP+ +A+AV+ Q+ D +R + Sbjct: 59 LGRKLSQREQAI------LTRQLASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEV 112 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SL+ ++++ R + + + G L L+ L+ + +R +K K+ Sbjct: 113 LGGHSLANALTQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEERNALKQKI 167 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIM 177 I + V+ L+ + P +NV + + LL + A + Sbjct: 168 LLAFTYPAIVTVIALGI---VTFLLSYVVPQVVNVFASTKQQLPLLTIVMMALSDFVRHW 224 Query: 178 VMRLMINF 185 ++I Sbjct: 225 WWAILIGI 232 >gi|124268322|ref|YP_001022326.1| general secretory pathway protein F [Methylibium petroleiphilum PM1] gi|124261097|gb|ABM96091.1| general secretory pathway protein F [Methylibium petroleiphilum PM1] Length = 404 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 57/167 (34%), Gaps = 8/167 (4%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVR 74 + V AGLP+ A+ + ++ DP + E + + G + ++ R Sbjct: 67 LAIWTRQLAGLVSAGLPLERALTALTDEAEDPRQRELLAHLRAEVNAGSPFARALGNAPR 126 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 E + + G L L L+ L +R+ +++K+ ++ + + Sbjct: 127 -----EFDDVYRAVVGAGEQTGQLGLVLEKLADDLEERQELRSKLIGAALYPAIVSLVAI 181 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHM--LLGVAAAFMLIGIMVM 179 + + T V +L ++A G ++M Sbjct: 182 VIVVFLVTYVVPQVASVFAGGKRALPFLTSAMLAISAFLRSWGWLLM 228 >gi|238916728|ref|YP_002930245.1| type IV pilus assembly protein PilC [Eubacterium eligens ATCC 27750] gi|238872088|gb|ACR71798.1| type IV pilus assembly protein PilC [Eubacterium eligens ATCC 27750] Length = 425 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 17/160 (10%), Positives = 49/160 (30%), Gaps = 8/160 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D ++AG+ V +A+ ++ Q+ + E + ++ + + Sbjct: 85 RDMSVFCRQFASILKAGVSVINALEMLAEQTENKKLKE-----AIVNTQSNVEKGENLSD 139 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G+L +L ++ + V+ M ++ Sbjct: 140 SMRQNDAFPSILIDMVRAGEASGSLENSLTRMAIQFEKDAKLNGIVKKAMMYPI---VLL 196 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + + ++ F P +M + + + A M Sbjct: 197 CVMIGVIIVMLTFVIPSFMTMFEDLDSELPVTTKAILAMS 236 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 49/141 (34%), Gaps = 10/141 (7%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + ++AG+P+ DA+ + + + +E G+SL +S ++ L Sbjct: 292 FARTMSTLLQAGMPMIDALEISASTMKNVLF---YDGLEKAKNGVSLGLPLSNQLKATGL 348 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + GN+ E L N + + ++ + ME II L Sbjct: 349 --FPAMVVHMVGIGEETGNVEEMLTNSAAYYEEEVEVQTQTLTSLMEP-----IIIVLMA 401 Query: 139 CVSTLVYFTSPGYMNVLINDP 159 V ++ M L N Sbjct: 402 LVVVMLIMAIYQPMIQLYNTL 422 >gi|94968418|ref|YP_590466.1| type II secretion system protein [Candidatus Koribacter versatilis Ellin345] gi|94550468|gb|ABF40392.1| type II secretion system protein [Candidatus Koribacter versatilis Ellin345] Length = 404 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 24/172 (13%), Positives = 50/172 (29%), Gaps = 6/172 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISR 71 D + AGLP+ + ++ Q S + V T G +L ++ Sbjct: 61 TKDIAIFFRQFSVMIDAGLPLVQCLEILAGNQESQAFQKALNGVRTTVEGGSTLGNAMRG 120 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + GG L L L+ + +KA V++ + + Sbjct: 121 YPKI-----FDDLMVNMVDAGETGGILDTILQRLATYVEKAVKLKAAVRSALIYPVSVIT 175 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 I + + V L + + + L M ++ Sbjct: 176 IAVLIVGLLLWKVVPIFANLFVGLGAPLPLPTRIVIGISNFLGSFWWMVPIM 227 >gi|15806863|ref|NP_295586.1| pilin biogenesis protein [Deinococcus radiodurans R1] gi|6459643|gb|AAF11416.1|AE002026_4 pilin biogenesis protein [Deinococcus radiodurans R1] Length = 406 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 59/175 (33%), Gaps = 8/175 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRM 72 + + AG+P+ ++A++ Q + ++V G LSE++ + Sbjct: 66 KQVAVFSKQLATLINAGVPLVQSLAILQRQLDNKTFEAVIKKVRGEVESGQPLSEALQQH 125 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G L L ++ + ++ K+++ Sbjct: 126 PKIFG-----RLFINLVRAGETSGTLDTVLERIADFQEKQLALQGKIKSALTYPTVVLVF 180 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMINF 185 + + + T V G + L ML+ V+ G++++ ++ Sbjct: 181 ALGITYFLLTTVVPQFAGILTQLNAPLPFITRMLMAVSNFLQHSGLLLLAIIAVI 235 >gi|209515956|ref|ZP_03264817.1| type II secretion system protein [Burkholderia sp. H160] gi|209503614|gb|EEA03609.1| type II secretion system protein [Burkholderia sp. H160] Length = 316 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 57/146 (39%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + LI +R P+ALD++V AG + V + + P+ EF + Sbjct: 157 LNALISRRQKAIASCLPDALDLLVICTNAGNSLVVGVKRVARELETICPPLADEFAVAGD 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + ++ + + L V T + Q G ++ +L LSR R + M Sbjct: 217 ELQVSGDSAGALRNLAARIGLPSVRALVTTLIQSQQYGTPITHSLRMLSRAERTAQMMAL 276 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K + ++ + V + Sbjct: 277 EEKAAKLATKMTMPMMLFILPTVGLI 302 >gi|297161945|gb|ADI11657.1| putative integral membrane protein [Streptomyces bingchenggensis BCW-1] Length = 304 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 66/183 (36%), Gaps = 3/183 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +RT + +++ ++ A + AV + +R E + + G Sbjct: 102 AAARRTERME-ALALWTEMLRDTLSAAAGLEQAVLTTADIAPSALRRELGDLAVSVRSGQ 160 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQAL 122 SL S+ + + + +Q + L+ L L+ +R++ M+ ++ A Sbjct: 161 SLPASLRSFADEVDDPLADVVVAALVMAAQRQASQLAALLGELADSVREQVAMRQRIDAG 220 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 +A + ++ ++ + + Y++ N G ++L + A + + + Sbjct: 221 RASIRAGVRVTVTVTLGMAVGLTVFNRPYLDP-FNTLSGQVVLAIVGALFALSFTWLTAI 279 Query: 183 INF 185 Sbjct: 280 GRL 282 >gi|184200572|ref|YP_001854779.1| hypothetical protein KRH_09260 [Kocuria rhizophila DC2201] gi|183580802|dbj|BAG29273.1| hypothetical membrane protein [Kocuria rhizophila DC2201] Length = 314 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 1/147 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R + +FP +++ +V AG A+ + + + EFR V+ Sbjct: 159 LSRSIRRREKLMVAEFPAIAELMALAVGAGESTVGALERVCRVAEGELSGEFRAVLAQTR 218 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD-RKNMKAKV 119 G L+ ++ + + F I V + G L+E L ++ +RD K + +V Sbjct: 219 AGSGLTTALQDFSARTDVVALGRFVDGIVVAIERGTPLAEVLRAQAQDVRDHDKRVLMEV 278 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146 A + LP V+ V+ Sbjct: 279 AGKKEIAMLVPVVFFILPLSVAFAVFP 305 >gi|187736073|ref|YP_001878185.1| type II secretion system protein [Akkermansia muciniphila ATCC BAA-835] gi|187426125|gb|ACD05404.1| type II secretion system protein [Akkermansia muciniphila ATCC BAA-835] Length = 422 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 20/161 (12%), Positives = 46/161 (28%), Gaps = 4/161 (2%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + + AGLP+ ++ V+ Q ++P + G S Sbjct: 78 ALMIFTRQLATLIDAGLPLLQSLNVLAKQEANPNLRVTIEALGDSVQGGS----TFSEAL 133 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + +LGG L L L+ + +K+KV + + +I Sbjct: 134 AQHPRIFDRLFVNMVKAGELGGVLEVVLNRLAEYQEKAQKLKSKVISAMVYPSIVLFIAV 193 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + + ++ + G + + Sbjct: 194 GIVIFLMLVIVPKFKAMFAEQNQELPGISEFVFGISDWFMA 234 >gi|225174919|ref|ZP_03728916.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] gi|225169559|gb|EEG78356.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] Length = 401 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 56/180 (31%), Gaps = 8/180 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSL 65 KR + + + AG+P++ + + Q+ + +R V G+S Sbjct: 57 KRKVSI-GELSLFSRQLAAMLSAGIPLTRCLFALGEQAINPTLRKVVLEVGANVEGGMSF 115 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 SES+ + + ++GG L L L+ L K +K ++ Sbjct: 116 SESLRAHPD-----VFNDMYVDLVKAGEVGGTLENVLLRLADQLNSEKTLKDNIRTAMFY 170 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + + G+ + + V + + + L+I Sbjct: 171 PTVVLAFAVLVMIGMLVFIVPVFVGFY-PDGAELPFLTAVIVGISNSVRVYWYIYLLIAL 229 Score = 38.6 bits (88), Expect = 0.40, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 41/131 (31%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + G+PV A+ S V + G S++E + + P Sbjct: 270 FSRTLATLLAGGIPVLQALETAGPASGSTMVEKAVQDTAMKIQEGQSIAEPLKESKLFPP 329 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + T++ + G+L L ++ AK +E ++ G + Sbjct: 330 M------VTLMISVGEETGDLPSLLNRIAEFYEAEVATMAKGLTALIEPLMIIFVGGIVA 383 Query: 138 FCVSTLVYFTS 148 V +L Sbjct: 384 VMVISLYLPIF 394 >gi|215413583|ref|ZP_03422251.1| transmembrane protein [Mycobacterium tuberculosis 94_M4241A] gi|298527131|ref|ZP_07014540.1| hypothetical protein TBAG_02389 [Mycobacterium tuberculosis 94_M4241A] gi|298496925|gb|EFI32219.1| hypothetical protein TBAG_02389 [Mycobacterium tuberculosis 94_M4241A] Length = 266 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 1/172 (0%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 AL+++V +RAG A ++ ++ PV R V LG ++ + Sbjct: 91 QALEAALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAA 150 Query: 74 RYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R L + + S G ++ + R + +R+ A+V A A+ASA I Sbjct: 151 RSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAI 210 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + LP L ++ L+ G LL V G++ + + Sbjct: 211 LAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWPDRITD 262 >gi|317489773|ref|ZP_07948272.1| hypothetical protein HMPREF1023_01971 [Eggerthella sp. 1_3_56FAA] gi|316911119|gb|EFV32729.1| hypothetical protein HMPREF1023_01971 [Eggerthella sp. 1_3_56FAA] Length = 301 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 59/152 (38%), Gaps = 1/152 (0%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESI 69 P+A++++ ++ AG P+ + P+ EF V +L S E++ Sbjct: 150 AIELALPDAMELLGIAIAAGSPIEQCFREVAESMDGPLAREFSLVDREVNLLGRSREEAL 209 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + + Q+VS F+ + G +L+E LA + + R+ +A + M K Sbjct: 210 EHLGQRCRSQDVSAFTAQLMQAVSQGSSLTEGLAVQAALARETAQAEAMERIRKMPTKLD 269 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + LV + + +ND G Sbjct: 270 IVLSLCFLPPTVALVVVPTVVNLLNFLNDSMG 301 >gi|238025714|ref|YP_002909945.1| general secretion pathway protein F [Burkholderia glumae BGR1] gi|237874908|gb|ACR27241.1| General secretion pathway protein F [Burkholderia glumae BGR1] Length = 405 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 54/171 (31%), Gaps = 6/171 (3%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSE 67 + + + AGLP+ +A+AV+ Q+ D +R + G SL+ Sbjct: 61 RKLSQREQAILTRQLASLLTAGLPLGEALAVLTEQAERDYIRELMAAIRAEVLGGHSLAS 120 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +++ R + + + G L L+ L+ + R +K K+ Sbjct: 121 ALTEHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEQRNALKQKIVLAFTYPG 175 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 I + + + V ++ +A + + Sbjct: 176 IVTLIALGIVTFLLSYVVPQVVNVFASTKQQLPFLTIVMMALSAFVRHWWW 226 Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 36/130 (27%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ S+ S I G SLS + Sbjct: 274 FASTLAILTAAGVPILRALQAAGETLSNRAMSGNIDDAIVRVREGTSLSRA------LNH 327 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + + G+++ L + + +E + G + Sbjct: 328 VKSFPPVLVHLIRSGEATGDVTTMLDRAAEGEARELERRTMFMTSLLEPLLILAMGGIVL 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 VIVLAVMLPI 397 >gi|254173284|ref|ZP_04879957.1| Bacterial type II secretion system protein F domain [Thermococcus sp. AM4] gi|214032693|gb|EEB73522.1| Bacterial type II secretion system protein F domain [Thermococcus sp. AM4] Length = 303 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 73/182 (40%), Gaps = 6/182 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 I KR + + P+A + S+RAG+ S+A+ + + EF+RV+ G Sbjct: 86 WRISKRLEEMEKNLPDAFFYLASSLRAGISFSEALEDLTTAKFGALTEEFKRVVGEIRKG 145 Query: 63 LSLSESISRMV-RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 S E++ M R + +I + G +S+ L ++ +R+ +K + +A Sbjct: 146 RSTVEALRVMALRNRKSPVIYRSLMIIIEALERGAPMSDVLVYVANDVREILRIKQERKA 205 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + I V + T M +++ P + V +G ++++ Sbjct: 206 STGMQMMFFIITSG---FVGPAIIGTVGKLMGIMVQGPAQAQIPTVLNIL--LGFVIIQA 260 Query: 182 MI 183 ++ Sbjct: 261 IV 262 >gi|149376815|ref|ZP_01894572.1| Type II secretory pathway, component PulF [Marinobacter algicola DG893] gi|149358936|gb|EDM47403.1| Type II secretory pathway, component PulF [Marinobacter algicola DG893] Length = 406 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 20/147 (13%), Positives = 44/147 (29%), Gaps = 6/147 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 D + ++AG+P+ + ++ + +R V G S + S+ R Sbjct: 67 DIALFTRQMATMMKAGVPLVQSFDIVTDGLENQGLRELIAAVRNDVASGTSFANSLRRHP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G L + L ++ L + +K KV+ A + Sbjct: 127 K-----YFDDLYCNLVDSGEKAGALEQMLDRIAMYLEKSETLKKKVRKAMTYPIAVIVVA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR 160 + + V D Sbjct: 182 IVVTAILLVKVVPQFESLFQGFGADLP 208 Score = 36.3 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 16/128 (12%), Positives = 39/128 (30%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 ++ + +G+P+ DA+ + G + + V + I +S Sbjct: 277 RVLSTTFASGVPLVDALESVAGATGNAVYRDAVLKIRD-----DVSSGTQLQASMKTTGV 331 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + ++ + GNL E L ++ + ME A + + + Sbjct: 332 FPVMAVQLTAIGEESGNLDEMLEKVADHYEGVVDDMVDNLTALMEPMIMAVLGVLVGGLI 391 Query: 141 STLVYFTS 148 + Sbjct: 392 VGMYLPIF 399 >gi|254255261|ref|ZP_04948577.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158] gi|124900998|gb|EAY71748.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158] Length = 324 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 71/162 (43%), Gaps = 4/162 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + R K +DFP+ALD++ V AGL + A+ + + SD V E ++ Sbjct: 157 LSQRVAARQQKIFEDFPDALDLLTVCVEAGLGLDAALMKVSEELRFRSDVVAGELDLLLL 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + ++++ F ++ + G ++SE+L LS +LR R+ M+A Sbjct: 217 EMRSGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESLRVLSDLLRTRRRMRA 276 Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158 + +A + I P + L+ VL+ Sbjct: 277 EERAAKIALKLLFPLIFCIFPALMVVLLGPAMIHVYRVLLPT 318 >gi|149909375|ref|ZP_01898030.1| type IV pilus biogenesis protein PilC [Moritella sp. PE36] gi|149807485|gb|EDM67434.1| type IV pilus biogenesis protein PilC [Moritella sp. PE36] Length = 417 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 18/172 (10%), Positives = 49/172 (28%), Gaps = 8/172 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSL 65 K+ I + AG+P+ ++ +I + +P V G SL Sbjct: 73 KKIKAMDIAL--ISRQISTMLNAGVPLVQSLEIIARSNDNPAMRSLIGEVAAEVSTGTSL 130 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S+++ + + + G+L ++ + +K+K++ Sbjct: 131 SDTLRKHP-----IYFDDLYCDLISAGEQSGSLDTIYDRIATYKEKAEALKSKIKKAMFY 185 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + + V + L ++ + + Sbjct: 186 PIMVVAVAVVVTLILLLYVIPQFKDIFAGFGAELPPFTLFVLSISDFVSQFW 237 Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 17/135 (12%), Positives = 41/135 (30%), Gaps = 7/135 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMV 73 + + AG+P+ D++ G S + V + GL + ++ Sbjct: 283 ALARFARTLSTTFAAGIPLVDSLTSAAGASGNIVYKHAVMEMRNEVIAGLPMHIAMRS-- 340 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 T + + + G+L + LA ++ I + + +E + Sbjct: 341 ----TNLFPDMVTQMVMIGEESGSLDDMLAKVAHIYEQQVDDAVDGLTSLIEPMIMVVLG 396 Query: 134 GSLPFCVSTLVYFTS 148 + V + Sbjct: 397 VIIGGLVIAMYLPIF 411 >gi|59710970|ref|YP_203746.1| MSHA biogenesis protein MshG [Vibrio fischeri ES114] gi|197334764|ref|YP_002155120.1| general secretion pathway protein F [Vibrio fischeri MJ11] gi|59479071|gb|AAW84858.1| MSHA biogenesis protein MshG [Vibrio fischeri ES114] gi|197316254|gb|ACH65701.1| general secretion pathway protein F [Vibrio fischeri MJ11] Length = 408 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 21/165 (12%), Positives = 51/165 (30%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRM 72 + + +AG+P+ A+ + S++ + V G SLS S+ + Sbjct: 67 EVLVIFCRQMYSLTKAGVPLLRAMNGLAQNSNNKLLKTTLEEVTADLTNGRSLSVSMQQH 126 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + S + + G L ++L L+ + ++++ Sbjct: 127 PQ-----VFSSLFVSMIHVGENTGRLDQSLMQLANYYEQEMETRKRIKSAMRYPVFVLTF 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 I F ++ V G + + +A + + Sbjct: 182 ILLAMFVLNIKVIPQFAGMFARFGVELPLPTRILIATSSFFVNYW 226 Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 10/135 (7%), Positives = 33/135 (24%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 +++G+P++ ++A+ + + + S Sbjct: 269 RAQMSRFSRTFALMLKSGVPLNQSLALSAESLGNKYLE-----NRLLEMKAGIESGTSMS 323 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G + + L +S + K +E + Sbjct: 324 ATAAQSGIFTPLVQQMIAVGEETGQIDDLLLEVSDFYDREVDYDLKTLTARIEPILLVIV 383 Query: 133 IGSLPFCVSTLVYFT 147 G + + Sbjct: 384 SGMVLILALGIFLPM 398 >gi|167751232|ref|ZP_02423359.1| hypothetical protein EUBSIR_02218 [Eubacterium siraeum DSM 15702] gi|167655739|gb|EDR99868.1| hypothetical protein EUBSIR_02218 [Eubacterium siraeum DSM 15702] Length = 399 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/181 (10%), Positives = 53/181 (29%), Gaps = 15/181 (8%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 D + + +G+ + A+ ++ + + + E G S SE+I+ Sbjct: 59 TKDLSFFCRQLAAMLTSGVSLVKALQILQAQSENKKQKQVLLDIYEEVQKGRSFSEAIAT 118 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P + + G+L + +S + K++ + Sbjct: 119 KPGVFP-----SLFVSMVSAGEASGSLDTIMNRVSEHYAKDSKTQNKIKGAMIYPIVLLV 173 Query: 132 IIGSLPFCVSTLVYFTS---------PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 ++ + + T++ P + + + I I++ + Sbjct: 174 LLLVIMIAMFTMIMPMFRDLAGDTEMPPLSAAIFGISDFMINQWYILVIVAIAIVITLRI 233 Query: 183 I 183 I Sbjct: 234 I 234 >gi|71281766|ref|YP_271236.1| general secretion pathway protein F [Colwellia psychrerythraea 34H] gi|71147506|gb|AAZ27979.1| general secretion pathway protein F [Colwellia psychrerythraea 34H] Length = 413 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 22/156 (14%), Positives = 55/156 (35%), Gaps = 6/156 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 + + + +GLP+ +++ + Q + ++S V G LSES++ Sbjct: 73 AELALITRQLATLIESGLPLEESLMAVAEQCEKNRIKSMIMGVRTKVTEGYGLSESMAEY 132 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G+L + L L+ R+ M++++ + + Sbjct: 133 PKA-----FNRLYRSMVAAGEKSGHLDKVLNRLADYTEKRQEMRSQLIQALVYPIIMTVV 187 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168 + + T V G + + G +A Sbjct: 188 AVGVIAILLTAVVPKIVGQFEHMGENLPGTTQFLIA 223 >gi|331002544|ref|ZP_08326061.1| hypothetical protein HMPREF0491_00923 [Lachnospiraceae oral taxon 107 str. F0167] gi|330409147|gb|EGG88603.1| hypothetical protein HMPREF0491_00923 [Lachnospiraceae oral taxon 107 str. F0167] Length = 284 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 51/151 (33%), Gaps = 1/151 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I R + L D+P L + V AG+P+ +A + + + E R Sbjct: 131 LNDKINSRRDELLRDYPGMLSKLTLLVNAGVPIREAWVRVADDNEGLLYQEMRNTAMELS 190 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKV 119 G+ E ++ + FST++ + + L ++S + K + K Sbjct: 191 NGIQEIEVYKAFGERCSIKSLKKFSTMMIQNLQKGSNEVVIFLKDMSNEAWEEKKHEVKR 250 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150 + +K I + ++ Sbjct: 251 KGEKASSKLIMPIGLIFLGVMILIIVPMFAS 281 >gi|325282694|ref|YP_004255235.1| Type II secretion system F domain-containing protein [Deinococcus proteolyticus MRP] gi|324314503|gb|ADY25618.1| Type II secretion system F domain protein [Deinococcus proteolyticus MRP] Length = 406 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 55/166 (33%), Gaps = 6/166 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMP 77 + + AG+P+ A+ ++ Q E R V GL LSE++++ + Sbjct: 71 FSRQMATLINAGVPLVQALFIMQKQIEHKSFQEVVRKVRIDVEGGLPLSEAMAKHPKA-- 128 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L L ++ ++ KV+ + Sbjct: 129 ---FNRLYLNLVRAGETSGTLELILGRIADFQEKDLALRGKVKKALTYPTIVLVFALLIT 185 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + V T + + + + ++ + L + ++I Sbjct: 186 WGLIRFVVPTFGDILTSMNTELPIITRMLMSMSAFLQSYTWVLVLI 231 >gi|22124672|ref|NP_668095.1| type IV pilin biogenesis protein [Yersinia pestis KIM 10] gi|45440117|ref|NP_991656.1| type IV pilin biogenesis protein [Yersinia pestis biovar Microtus str. 91001] gi|153997530|ref|ZP_02022630.1| putative type II secretion system protein [Yersinia pestis CA88-4125] gi|162100163|ref|YP_652836.2| type IV pilin biogenesis protein [Yersinia pestis Antiqua] gi|162139448|ref|YP_646593.2| type IV pilin biogenesis protein [Yersinia pestis Nepal516] gi|162421450|ref|YP_001605603.1| type IV pilin biogenesis protein [Yersinia pestis Angola] gi|165925869|ref|ZP_02221701.1| putative protein transport protein HofC [Yersinia pestis biovar Orientalis str. F1991016] gi|165936613|ref|ZP_02225180.1| putative protein transport protein HofC [Yersinia pestis biovar Orientalis str. IP275] gi|166010015|ref|ZP_02230913.1| putative protein transport protein HofC [Yersinia pestis biovar Antiqua str. E1979001] gi|166214119|ref|ZP_02240154.1| putative protein transport protein HofC [Yersinia pestis biovar Antiqua str. B42003004] gi|167398755|ref|ZP_02304279.1| putative protein transport protein HofC [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420522|ref|ZP_02312275.1| putative protein transport protein HofC [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423299|ref|ZP_02315052.1| putative protein transport protein HofC [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469162|ref|ZP_02333866.1| putative protein transport protein HofC [Yersinia pestis FV-1] gi|218930444|ref|YP_002348319.1| type IV pilin biogenesis protein [Yersinia pestis CO92] gi|229839071|ref|ZP_04459230.1| putative type II secretion system protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896550|ref|ZP_04511718.1| putative type II secretion system protein [Yersinia pestis Pestoides A] gi|229899635|ref|ZP_04514776.1| putative type II secretion system protein [Yersinia pestis biovar Orientalis str. India 195] gi|229901030|ref|ZP_04516153.1| putative type II secretion system protein [Yersinia pestis Nepal516] gi|270489208|ref|ZP_06206282.1| type II secretion system F domain protein [Yersinia pestis KIM D27] gi|21957483|gb|AAM84346.1|AE013678_1 putative integral membrane protein [Yersinia pestis KIM 10] gi|45434972|gb|AAS60533.1| putative type II secretion system protein [Yersinia pestis biovar Microtus str. 91001] gi|115349055|emb|CAL22016.1| putative type II secretion system protein [Yersinia pestis CO92] gi|149289167|gb|EDM39247.1| putative type II secretion system protein [Yersinia pestis CA88-4125] gi|162354265|gb|ABX88213.1| putative protein transport protein HofC [Yersinia pestis Angola] gi|165915262|gb|EDR33872.1| putative protein transport protein HofC [Yersinia pestis biovar Orientalis str. IP275] gi|165922481|gb|EDR39658.1| putative protein transport protein HofC [Yersinia pestis biovar Orientalis str. F1991016] gi|165990922|gb|EDR43223.1| putative protein transport protein HofC [Yersinia pestis biovar Antiqua str. E1979001] gi|166204750|gb|EDR49230.1| putative protein transport protein HofC [Yersinia pestis biovar Antiqua str. B42003004] gi|166961328|gb|EDR57349.1| putative protein transport protein HofC [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051259|gb|EDR62667.1| putative protein transport protein HofC [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057469|gb|EDR67215.1| putative protein transport protein HofC [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681755|gb|EEO77848.1| putative type II secretion system protein [Yersinia pestis Nepal516] gi|229687127|gb|EEO79202.1| putative type II secretion system protein [Yersinia pestis biovar Orientalis str. India 195] gi|229695437|gb|EEO85484.1| putative type II secretion system protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700624|gb|EEO88655.1| putative type II secretion system protein [Yersinia pestis Pestoides A] gi|270337712|gb|EFA48489.1| type II secretion system F domain protein [Yersinia pestis KIM D27] gi|320016633|gb|ADW00205.1| putative type II secretion system protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 399 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 56/177 (31%), Gaps = 10/177 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72 + + ++AGLP+ +++ ++ ++ D + + G SLSE + + Sbjct: 59 ERLVAMTRQLATLLQAGLPLVNSLQLLAKEADDSAWRCLLDEISQQVAQGQSLSEVMEQY 118 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + +L GNL + L ++N+ KV + Sbjct: 119 P-----HVFPRLYPPVVAVGELTGNLEQCCTQLVHHQERQQNLHKKVIKALKYPVVVCIV 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHM--LLGVAAAFMLIG--IMVMRLMINF 185 + + +V G LL ++ G + ++ ++ Sbjct: 174 ALVVSVIMLVMVLPEFAQIYQSFDTPLPGLTASLLWLSTFLTFYGPYLALIIAIVCI 230 Score = 41.6 bits (96), Expect = 0.054, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 36/133 (27%), Gaps = 5/133 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + + +AGLP+S + + + R I+ Q +S+ I Sbjct: 265 LSQIFQTLAITQQAGLPLSAGLDAAARSIHNYNYQQALRCIQKQ-----ISQGIPLYTTL 319 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + G+ L L+ + + A +E I Sbjct: 320 NQHPLFPAICQQLIRVGEESGSQDVLLEKLACWHQQQTQNLADNVTQMLEPLLMLIIGSI 379 Query: 136 LPFCVSTLVYFTS 148 + V + Sbjct: 380 VGVLVIAMYLPIF 392 >gi|325273277|ref|ZP_08139555.1| type IV pili biogenesis protein PilC [Pseudomonas sp. TJI-51] gi|324101608|gb|EGB99176.1| type IV pili biogenesis protein PilC [Pseudomonas sp. TJI-51] Length = 402 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 58/184 (31%), Gaps = 21/184 (11%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSL 65 KR K D + ++AG+P+ A V+ S + + R+ + GL L Sbjct: 58 KRREK--ADPAGFSRQLATLLKAGVPLLQAFEVMGRSGCSAALAALLVRLKQDVAAGLGL 115 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + ++ R + + G L L L+ +L R+ ++ KV+ + Sbjct: 116 ANALQRHP-----GWFDALYCNLVRVGEQSGTLDRQLEQLAGMLEQRRALQKKVRKAMVY 170 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVL-------------INDPRGHMLLGVAAAFM 172 + + V + ++ G + A + Sbjct: 171 PLLLLLTGLGVSAVLLLEVIPRFEDMFAGMGAQLPAFTQWVIDLSTGFGRFAPMLLALGL 230 Query: 173 LIGI 176 ++G Sbjct: 231 VLGF 234 Score = 38.2 bits (87), Expect = 0.58, Method: Composition-based stats. Identities = 14/137 (10%), Positives = 41/137 (29%), Gaps = 7/137 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISR 71 + + AG+P+ DA+ + + + R+ + G L+++++ Sbjct: 266 QAALARFARSLATAYAAGVPLLDALGTVARVTGGQLHEQAVLRLRQGMANGQGLNQAMAG 325 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P ++ + G L L + ++ + +E Sbjct: 326 EPLFPP------LLVQLTAIGEASGTLDTMLDKAASHYEEQVSQALDQLTSLLEPAIVLV 379 Query: 132 IIGSLPFCVSTLVYFTS 148 + + V + Sbjct: 380 LGLLVGGLVVAMYLPIF 396 >gi|310657500|ref|YP_003935221.1| general secretory pathway component, cryptic [Clostridium sticklandii DSM 519] gi|308824278|emb|CBH20316.1| general secretory pathway component, cryptic [Clostridium sticklandii] Length = 405 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 61/167 (36%), Gaps = 6/167 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 D + + AG+P+S+A+ V+ Q+ + +R + V GL LS+++ + Sbjct: 66 KDISVFCKQLYTMLNAGMPLSNALDVLGDQTENKVLRRTVKEVYSEVQTGLILSQAMKKH 125 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P + ++ GNL LA +S + +K++ + + Sbjct: 126 KKVFPN-----LLITMVEAGEMTGNLDNVLAKMSEHYEKENKINSKIKGAMVYPAILSVA 180 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + T + T + G L ++ + L + Sbjct: 181 AVGVVIFLLTFIMPTFTEMFTSSGVELPGPTKLLMSISDALKNYWYI 227 Score = 42.8 bits (99), Expect = 0.024, Method: Composition-based stats. Identities = 19/131 (14%), Positives = 46/131 (35%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + +G+P+ A+ +++ V +VIE GLS+S + M Sbjct: 274 FTRTLSTLMASGIPIVPAMEAAANVTNNQVVIDGMNKVIEDVKKGLSISFLLKSM----- 328 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+L E L+ + + + + +E ++ + Sbjct: 329 -HFFPPMVISMVGIGEESGSLEEMLSKTADYYDEELDASIQKMLSLLEPMLILFMGVIVG 387 Query: 138 FCVSTLVYFTS 148 F V +++ Sbjct: 388 FIVISMMLPIF 398 >gi|304313087|ref|YP_003812685.1| General secretion pathway protein F [gamma proteobacterium HdN1] gi|301798820|emb|CBL47053.1| General secretion pathway protein F [gamma proteobacterium HdN1] Length = 404 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 52/187 (27%), Gaps = 17/187 (9%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65 +R + D + VRAG+P+ A+ + QS V S V G SL Sbjct: 58 RRGSMGSADLALVTRQLATLVRAGIPIEGALRAVSKQSEKPKVASIMLAVRSRVVEGHSL 117 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + P + G+L L LS R + +Q + Sbjct: 118 ESALAEFPQAFPD-----LYRATIGAGEHSGHLDLVLEQLSDYTESRHRTQRTIQGAMIY 172 Query: 126 AKASAWIIGSLPFCVSTLVYF-----------TSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + + V P VLI A ++ Sbjct: 173 PIVLTAFAVLIVVGMLMFVVPKIVTVFESSGQQLPAMTQVLIGTSAFLQHWWWALLLVIG 232 Query: 175 GIMVMRL 181 + + Sbjct: 233 LFVWLWR 239 Score = 38.6 bits (88), Expect = 0.45, Method: Composition-based stats. Identities = 14/129 (10%), Positives = 33/129 (25%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + R+G+P+ +A+ + + + E L E S Sbjct: 273 VVGTLAILSRSGVPLVEALRISSQVAGNLPIREAV-----SEAATKLREGSSLFTSLDQC 327 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L L ++ E + G + Sbjct: 328 GYFPPMMMQMIASGESSGELDTMLTRAAQNQERELEEVIATIVGLFEPIMLVVMGGVVLI 387 Query: 139 CVSTLVYFT 147 V +++ Sbjct: 388 IVLSIMMPV 396 >gi|188590753|ref|YP_001922431.1| bacterial type II secretion system protein F [Clostridium botulinum E3 str. Alaska E43] gi|188501034|gb|ACD54170.1| bacterial type II secretion system protein F [Clostridium botulinum E3 str. Alaska E43] Length = 400 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 20/179 (11%), Positives = 54/179 (30%), Gaps = 12/179 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D + AG+P+ + ++ Q+++ E + +E + Sbjct: 62 KDLSIFCRQFYTMLDAGVPILTCLNILTSQTTNKKLQETLKEVEDDVEKGGV----LSDA 117 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + GNL + ++ + KV+ + + Sbjct: 118 MRKHTEVFPGLLVSLVAAGEASGNLDSIMLRMANHYEKENKVSNKVRNAMIYPI---ILG 174 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHM-----LLGVAAAFMLIGIMVMRLMINFDV 187 V ++ + P + ++ I LL +A+ M++ ++ V Sbjct: 175 LVAITAVVFILTYVMPTFTDLFIESGLSLPWSTRFLLWSSASLKAHWFMILLAIVGITV 233 Score = 36.6 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 19/146 (13%), Positives = 48/146 (32%), Gaps = 8/146 (5%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSL 65 +R + + + + +GLP+ A+ +++G + + +V E G SL Sbjct: 259 RRLNEMII-VSRFTRTLSTLLSSGLPLVQALDIVIGVIDNKIAEDAILKVKEKVVRGESL 317 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + S+ + + G+L + L + + + ME Sbjct: 318 NSSLRETG------IFPQMLYSMIKIGEETGSLDDILNKTADFYDEELESTIQTTVALME 371 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGY 151 + + F + +++ Y Sbjct: 372 PALIVIMGLIIGFIIISIMIPMFDSY 397 >gi|148975967|ref|ZP_01812756.1| hypothetical Flp pilus assembly protein TadC [Vibrionales bacterium SWAT-3] gi|145964712|gb|EDK29965.1| hypothetical Flp pilus assembly protein TadC [Vibrionales bacterium SWAT-3] Length = 280 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 62/148 (41%), Gaps = 2/148 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 ++ K +K P LD++ V+ G+ + ++ + + ++ ++ Sbjct: 123 LQMRRKMLISKTSAQLPYLLDMMSVCVQTGMTIEASLVYLGKELAEFDSDLCYQIKRTSD 182 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + ++++ + +P + F I Q G ++++ L++L+ +R + + + Sbjct: 183 SAKIHGVEKALNDLTERIPTPAIRSFVLTIIQNLQYGTSVAQTLSDLAEDMRKVQILTVE 242 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYF 146 + + AK S +I + F + L+ Sbjct: 243 EKVGKLSAKMSVPLILFIMFPIVILILA 270 >gi|121997134|ref|YP_001001921.1| type II secretion system protein [Halorhodospira halophila SL1] gi|121588539|gb|ABM61119.1| type II secretion system protein [Halorhodospira halophila SL1] Length = 406 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 23/165 (13%), Positives = 56/165 (33%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 D+ +RAG+PV A+ + +++ + V + G +L +++SR Sbjct: 67 DELVTFTRQFRALLRAGVPVVRALRGLGQNTANARLGRTLEEVAQGLESGQTLFDAMSRH 126 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P + + G L E+L ++ L + + +++A Sbjct: 127 PKTFP-----RLLLAMIRVGEESGQLEESLERMAASLDQERTTRERIKAALRYPTFVMIA 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 I + ++ V + + D L + + + Sbjct: 182 IIAALVVINLFVIPPFADLFDGMGTDLPAMTALLIGFSEGFVEYW 226 Score = 42.0 bits (97), Expect = 0.037, Method: Composition-based stats. Identities = 14/132 (10%), Positives = 41/132 (31%), Gaps = 5/132 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +VR+G+P+ A+ + + + + R I G+ E + ++ Sbjct: 272 LARFARTFSMAVRSGVPLLQAMDSVAEATDN---AHIARGIRDLRTGIERGEGLYQVAER 328 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 L + + + G +++ + ++ K + +E +I Sbjct: 329 SGL--FTPLVLQMLAVGEETGQVADMMDQVAEFYEREVEEDLKKLSSYIEPFVIGFIGVL 386 Query: 136 LPFCVSTLVYFT 147 + + Sbjct: 387 VLILALGIFMPM 398 >gi|126658485|ref|ZP_01729633.1| type II secretion system protein [Cyanothece sp. CCY0110] gi|126620227|gb|EAZ90948.1| type II secretion system protein [Cyanothece sp. CCY0110] Length = 404 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 20/166 (12%), Positives = 59/166 (35%), Gaps = 6/166 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+ + + V+ Q ++ ++ + G+SLSE++ + Sbjct: 69 FSRQFSVMINAGVAIVRCLGVLSEQATNPKLKKALSAISAEVQQGISLSEALEKHPSC-- 126 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + GG L E L L+++L D ++ ++++ + + Sbjct: 127 ---FDQLYVSMVEAGETGGVLDEVLNRLAKLLEDMARLQNQIKSAMAYPVTVGILAVIVF 183 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 F ++ + G L + + + ++ ++ ++ Sbjct: 184 FAMTIFLIPVFAGIFEDLGAELPALTQFMLYLSSIMRSWKILIPIV 229 Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 12/134 (8%), Positives = 38/134 (28%), Gaps = 7/134 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + R+G+P+ ++ ++ + + + G +S ++ Sbjct: 273 FCRVFGTLTRSGVPILTSLEIVCNTVGNKVISNAVAGAQAEIQQGGMMSLALQNA----- 327 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L + ++ D K +E I G + Sbjct: 328 -NVFPQLAIQMICIGEETGELDAMMMKVADFYEDEVEQAVKALTSIIEPLMMVGIAGMVG 386 Query: 138 FCVSTLVYFTSPGY 151 + ++ + Sbjct: 387 VILLSMYLPMFSIF 400 >gi|116671217|ref|YP_832150.1| type II secretion system protein [Arthrobacter sp. FB24] gi|116611326|gb|ABK04050.1| type II secretion system protein [Arthrobacter sp. FB24] Length = 313 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 63/154 (40%), Gaps = 2/154 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + IK+R + +FP+ +++ +V AG + A+ + S + EF V+ Sbjct: 158 LGSQIKRREKLMMAEFPSLAELMALAVSAGESATGALDRVCRSSHGELAREFELVLGETR 217 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L E++ R L + F I V + G L++ L ++ +RD K + Sbjct: 218 AGKPLVEALQRFSARTDLGPLVRFVDGIIVAVERGTPLADVLRAQAQDVRDTA--KRDLM 275 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + + + + T+++ PG + Sbjct: 276 ESAGKKEIAMMVPLVFGVLPLTVIFAVFPGLAAI 309 >gi|311744031|ref|ZP_07717837.1| integral membrane protein [Aeromicrobium marinum DSM 15272] gi|311313161|gb|EFQ83072.1| integral membrane protein [Aeromicrobium marinum DSM 15272] Length = 289 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 68/182 (37%), Gaps = 2/182 (1%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR L+ + + ++ + + A+ ++ + + + + + L Sbjct: 93 EKRAIAKLEGLAAWTESLRDTIAGAVGLEQAIPATAYAAAPSIAPQLTILADRLRVRTPL 152 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ R + + + ++ G L + L +L+ R+ M+ +V A Sbjct: 153 PVALQRFADDLDDPSADLIVAALMLNAKLRGPGLRDVLTSLADSAREELEMRRRVGAGRA 212 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + S I+ ++ + + Y+ + G ++L V F + G MR + + Sbjct: 213 STRRSVQIVMAISIAFVFGLTLFNRDYVEP-FSSALGQVVLLVVMLFFVAGFAWMRRLSD 271 Query: 185 FD 186 F+ Sbjct: 272 FE 273 >gi|51595055|ref|YP_069246.1| type IV pilin biogenesis protein [Yersinia pseudotuberculosis IP 32953] gi|153948491|ref|YP_001402329.1| type IV pilin biogenesis protein [Yersinia pseudotuberculosis IP 31758] gi|51588337|emb|CAH19945.1| putative outer membrane protein export (MTB) sytem, hofC subunit [Yersinia pseudotuberculosis IP 32953] gi|152959986|gb|ABS47447.1| putative protein transport protein HofC [Yersinia pseudotuberculosis IP 31758] Length = 399 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 56/177 (31%), Gaps = 10/177 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72 + + ++AGLP+ +++ ++ ++ D + + G SLSE + + Sbjct: 59 ERLVAMTRQLATLLQAGLPLVNSLQLLAKEADDSAWRCLLDEISQQVAQGQSLSEVMEQY 118 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + +L GNL + L ++N+ KV + Sbjct: 119 P-----HVFPRLYPPVVAVGELTGNLEQCCTQLVHHQERQQNLHKKVIKALKYPVVVCIV 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHM--LLGVAAAFMLIG--IMVMRLMINF 185 + + +V G LL ++ G + ++ ++ Sbjct: 174 ALVVSVIMLVMVLPEFAQIYQSFDTPLPGLTASLLWLSTFLTFYGPYLALIIAIVCI 230 Score = 42.4 bits (98), Expect = 0.026, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 37/133 (27%), Gaps = 5/133 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + + +AGLP+S + + + R I+ Q +S+ I Sbjct: 265 LSQIFQTLAITQQAGLPLSAGLDAAARSIHNYNYQQALRCIQKQ-----ISQGIPLYTTL 319 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + G+L L L+ + + A +E I Sbjct: 320 NQHPLFPAICQQLIRVGEESGSLDVLLEKLACWHQQQTQNLADNVTQMLEPLLMLIIGSI 379 Query: 136 LPFCVSTLVYFTS 148 + V + Sbjct: 380 VGVLVIAMYLPIF 392 >gi|28572730|ref|NP_789510.1| hypothetical protein TW582 [Tropheryma whipplei TW08/27] gi|28410863|emb|CAD67248.1| putative membrane protein [Tropheryma whipplei TW08/27] Length = 294 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 72/181 (39%), Gaps = 4/181 (2%) Query: 7 KRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +R + +P+ ++ ++ +VR G+ + +A+ + +R F + + Sbjct: 108 RRLVSLDSNIWPDIVENVISAVRVGMGLPEALCSLSRFGPVRIRQIFCNLENEYGATGNF 167 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSM 124 + +++ + + + + LGG+ L + L NLS +R+ +A++ Sbjct: 168 ASAVANAKCALADPKADRILETVQLARSLGGSELIKVLRNLSEYMREDLATRAEIVGRQS 227 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +A I + P+ V ++ + N G +++ + A I +M ++ Sbjct: 228 WVVNAARIAVAAPWAVLAIMSTRAETVSA--YNSQAGVVVIILGALSCAIAYKIMMVVAR 285 Query: 185 F 185 Sbjct: 286 I 286 >gi|57233905|ref|YP_182063.1| pilin biogenesis protein, putative [Dehalococcoides ethenogenes 195] gi|57224353|gb|AAW39410.1| pilin biogenesis protein, putative [Dehalococcoides ethenogenes 195] Length = 401 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 19/164 (11%), Positives = 57/164 (34%), Gaps = 6/164 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRM 72 + + + +G + ++ ++ Q+++ + E ++ G SLS ++S+ Sbjct: 62 REVILFSRQLALLLESGTDIVTSLELLQEQTTNKLFREIIGEIVNDIRGGSSLSLAMSKH 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P + + GG+L L NL+ ++ + K+++ A + Sbjct: 122 PKAFPPLYHR-----VIAAGEQGGSLEVVLRNLANFVQRNVETEKKIKSALTYPSVVAVV 176 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + + T V + + + + + + Sbjct: 177 GILVLLLMVTFVLPAFTSLYSQMGTELPAATRILIGISDFFGAW 220 Score = 34.3 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 7/140 (5%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSE 67 L + A + +AGLP+ + + +++ + S V G LS Sbjct: 260 RILLLSELSRACQTMSLLFKAGLPLPEIMNQTTAAANNKLISNALAEVQHDLIRGEGLSR 319 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +++ ++P+ + + G L + LA +S + + ++ Sbjct: 320 PMTKNPLFLPM------MVQMVSVGEETGKLDDTLATVSATYDTEADDRISSAIGMIQPV 373 Query: 128 ASAWIIGSLPFCVSTLVYFT 147 + I + F LV Sbjct: 374 MTIAIGLIVGFIAVALVSSM 393 >gi|301165488|emb|CBW25059.1| pilus-assembly protein [Bacteriovorax marinus SJ] Length = 406 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 61/158 (38%), Gaps = 10/158 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D N + + AG+P+ A+ +I + ++ + + G +++E++ + Sbjct: 68 KDLANFTKQLSIMINAGVPILQALEIIFKSEKQPTLKKSVKNIARDVGEGQTIAEAMEK- 126 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + GG L E L LS L ++ KA+V++ M + Sbjct: 127 -----QKGFNKLYCNLVKAGEAGGILDEILEKLSVHLEKQEKTKAQVKSAMMYPFIVTLV 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + + ++ F P ++ +L + + + Sbjct: 182 GFGVIWG---MMVFVVPQFVGMLADTGQEPPWITQMVI 216 >gi|225351468|ref|ZP_03742491.1| hypothetical protein BIFPSEUDO_03063 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157812|gb|EEG71095.1| hypothetical protein BIFPSEUDO_03063 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 424 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 57/181 (31%), Gaps = 22/181 (12%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 DF + V AG+ + A+ ++ Q + +R+ R ++ G S SE++ Sbjct: 81 KDFAVMSRQLATMVAAGVSLIRALNIVTEQIGNVKLRNAVRDCMQQVEAGSSFSEAMDNN 140 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 ++ + + GG L ++L ++ ++ +++ I Sbjct: 141 PDHLFPP----IMINMVRAGETGGFLDKSLITVADSFEADVRLQGQIKGALAYPVVVLGI 196 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIND---------------PRGHMLLGVAAAFMLIGIM 177 L + + + + P G ++ V A + + Sbjct: 197 AVLLVGVMLLTIVPMFDSMYASMGAELPWVTQIMVDMGKTAPVGIPVIIVCAVAFV--MF 254 Query: 178 V 178 Sbjct: 255 W 255 Score = 42.8 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 15/137 (10%), Positives = 39/137 (28%), Gaps = 5/137 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + + +G+P+ A+ ++ S + V E + + + Sbjct: 286 ALARFCNNFTSMLASGVPILQALDIVGSTSGNYVIDEASK-----RVSRLVERGYRLADS 340 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + G + + LA+ + + AK +E + Sbjct: 341 MGTEKVFPNMMVQMVAIGEDSGAIDQMLASAGKAYDEEAQSIAKQLTSLLEPLMILVLGS 400 Query: 135 SLPFCVSTLVYFTSPGY 151 + F V L + Sbjct: 401 VVGFMVVALYMPMFSMF 417 >gi|307133501|dbj|BAJ19013.1| TadC [Aggregatibacter actinomycetemcomitans] Length = 288 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 69/157 (43%), Gaps = 4/157 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 + ++K + K ++D +D++ +V+ G+ + A+ + ++ Sbjct: 130 IGSILKAKIKKIMNDLAGFIDLVAVNVQTGISIEAALKQVATDFKTLNPDLTYVMLRIIR 189 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + +S+++ + +P E+ F TV+ G ++ L LS +R+ + + + Sbjct: 190 KSEITGMSQALQDLSVSLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSTDIREIQLLAIE 249 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + ++ AK S +I + F + L+ +PG M V Sbjct: 250 EKLGTLSAKMSIPLILFIMFPIIILI--LAPGVMRVF 284 >gi|258544197|ref|ZP_05704431.1| 3-isopropylmalate dehydrogenase [Cardiobacterium hominis ATCC 15826] gi|258520573|gb|EEV89432.1| 3-isopropylmalate dehydrogenase [Cardiobacterium hominis ATCC 15826] Length = 405 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 50/154 (32%), Gaps = 10/154 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIETQHLGLSLSESISRMVRYM 76 + +RAG+PV A+ ++ P +R + E G +L+E++ Sbjct: 70 FTRQMATMLRAGMPVLRALDLVGESIEKPLAMREMVFDLYERIQNGATLAEAMRAHPLQ- 128 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 T + + G L + N++ L + K KV+ ++ Sbjct: 129 ----FDDLYTSLIAAGEDAGMLESTMDNIALNLEKGEATKKKVKKALTYPA---IVMVFA 181 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + L+ P + +++ L Sbjct: 182 IIVTAILLINVVPVFAQFFLSNGGELPWLTQFVV 215 Score = 40.1 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 12/131 (9%), Positives = 38/131 (29%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ + + + + + G +S ++ Sbjct: 275 FARTMSTLFNAGVPLMRGLQATAPATGSVLYERAVYEIRDDVQNGQQMSFAMKNTGL--- 331 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++ + GNL E L ++ + + + +E A++ + Sbjct: 332 ---FPTIAVQMTAIGEESGNLGEMLGRVATYYEEELDWRIDNLTAMIEPAIMAFLAVVVG 388 Query: 138 FCVSTLVYFTS 148 + + Sbjct: 389 GLIIAMYLPIF 399 >gi|114777392|ref|ZP_01452389.1| type II secretion system protein [Mariprofundus ferrooxydans PV-1] gi|114552174|gb|EAU54676.1| type II secretion system protein [Mariprofundus ferrooxydans PV-1] Length = 397 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 21/166 (12%), Positives = 49/166 (29%), Gaps = 6/166 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 D + + AGLP+ + + + V + G L E++ + Sbjct: 58 DKDISIFFRQLSTMINAGLPLVQCFELAERGTEKKAMVKLLADVRQNLEGGNPLGETMRK 117 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + E + + + GG L L L +KAK+++ + A Sbjct: 118 YPK-----EFDRLTCALVEAGEQGGILDTILLRLCVYKEKALALKAKIKSAMVYPIAILT 172 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + + V + + +A + + + Sbjct: 173 VSFIVTAILMIFVIPVFGEMFADVGAQLPAPTRITMAVSDIFVAYW 218 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 40/130 (30%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 AG+P+ +A+ + S + V E + + + P+ Sbjct: 267 FCRTFSTLSAAGVPILEALDTVAETSGNVVIEEVILSSKESISQGQTLTAPLEASKIFPV 326 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 T + + G++ E LA ++ + + ME ++ G + Sbjct: 327 -----MVTQMISIGEQTGSMEEMLAKIADFYEEEVDTAVDNMQQLMEPVIMVFLGGVIGG 381 Query: 139 CVSTLVYFTS 148 V ++ Sbjct: 382 LVISMYLPIF 391 >gi|94499731|ref|ZP_01306268.1| general secretion pathway protein F [Oceanobacter sp. RED65] gi|94428485|gb|EAT13458.1| general secretion pathway protein F [Oceanobacter sp. RED65] Length = 404 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 22/159 (13%), Positives = 50/159 (31%), Gaps = 9/159 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72 D + + AGLP+ +A+ Q+ V G SL+ +++ Sbjct: 65 ADLALLTRQLSTLIGAGLPIEEALRATADQTEKRRIKTMIMDVRSKVLEGHSLANALNDF 124 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P + G+L L L+ + + + K++ ++ + Sbjct: 125 SYAFPQ-----LYRATVAAGEHAGHLDTVLNRLADYMERAQENQQKIKLAAVYPI---IL 176 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 V L+ + P + V + + + +L Sbjct: 177 CIVAIAIVVGLLTYVVPDIVEVFVKNGQELPVLTRVMIS 215 Score = 38.9 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 14/129 (10%), Positives = 37/129 (28%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+P+ +A+ + + V E + S++E + Sbjct: 273 FISTLAILNSSGVPLVEAMRIASQVVGNEVIKERLK-----EASQSVTEGGALHTALEKT 327 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + S + + G L L ++ + E + G + Sbjct: 328 KVFSPIMLHMVASGETSGELDSMLEKTAKNQENDLQNTVSTLVSMFEPIMLLAMGGIVVL 387 Query: 139 CVSTLVYFT 147 V ++ Sbjct: 388 IVIAIMLPI 396 >gi|325963896|ref|YP_004241802.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans Sphe3] gi|323469983|gb|ADX73668.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans Sphe3] Length = 313 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 63/154 (40%), Gaps = 2/154 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +K+R + + +FP+ +++ +V AG + A+ + + + EF ++ Sbjct: 158 LGAQVKRRETRMMAEFPSLAELMALAVSAGESATGALDRVCRSAKGELSREFSNILAETR 217 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +++ L + F I V + G L++ L ++ +RD K + Sbjct: 218 AGKPLVQALQEFSARTDLAPLVRFVDGIVVAVERGTPLADVLRAQAQDVRDTA--KRDLM 275 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + + + + T+V+ PG + Sbjct: 276 EAAGKKEIAMMVPLVFGVLPLTVVFAVFPGLAAI 309 >gi|323489975|ref|ZP_08095196.1| hypothetical protein GPDM_11510 [Planococcus donghaensis MPA1U2] gi|323396271|gb|EGA89096.1| hypothetical protein GPDM_11510 [Planococcus donghaensis MPA1U2] Length = 403 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 61/172 (35%), Gaps = 6/172 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 D F L +RAG+ + D+V ++ Q P++ + E G SLS S+++ Sbjct: 61 RDQFIMFLRQFSTLMRAGVTIVDSVHILSQQVESKPLQRALAEIAEELRKGNSLSNSLAK 120 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + +L GN+ E+L +L+ + KV + Sbjct: 121 YPKIFEP-----LTINLVKAGELAGNIDESLDSLATHYDKAYQTRQKVISAMSYPVVVGI 175 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + + + + + + + A+ + G + L+ Sbjct: 176 LAIGVVIFLLSSIVPMFADMFSGFGGELPLITQFVMGASDFVQGYWYLLLLA 227 >gi|317051457|ref|YP_004112573.1| general secretion pathway protein F [Desulfurispirillum indicum S5] gi|316946541|gb|ADU66017.1| general secretion pathway protein F [Desulfurispirillum indicum S5] Length = 406 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 65/161 (40%), Gaps = 9/161 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 +D + ++AGLPV +A+ + Q+ + VRS V G SL++S+++ Sbjct: 67 NDLSLCTRQMATLIQAGLPVEEALKAVAAQTEKNRVRSILLGVRAKVMEGYSLAKSLAQY 126 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R P S + + G+L L L+ ++ + KVQ + + Sbjct: 127 PRAFPDLYRSTVAA-----GEHAGHLDLVLERLADYTEGQQRSRQKVQLALLYPA---IL 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + V+ L+ + P + V ++ + L +A + Sbjct: 179 TVTSILIVTFLLGYVVPDVIKVFVDTGQELPGLTIALISLS 219 Score = 38.6 bits (88), Expect = 0.46, Method: Composition-based stats. Identities = 13/129 (10%), Positives = 36/129 (27%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + ++G+P+ +A+ + + E + +G +SE S + Sbjct: 275 FASTLSILAQSGVPLVEAIRIAGQVLGNDFIKE-----RSMDIGRMVSEGESLHLALDKA 329 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G L L+ ++ E + + Sbjct: 330 KCFPPMMIHMVASGESSGELDTMLSRVAANQERDMESLVATFVGLFEPFMLVVMGTVVLL 389 Query: 139 CVSTLVYFT 147 V ++ Sbjct: 390 IVLAILMPI 398 >gi|167717374|ref|ZP_02400610.1| general secretion pathway protein F [Burkholderia pseudomallei DM98] Length = 352 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 69/188 (36%), Gaps = 17/188 (9%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + + +R + + AGLP+ +A+AV+ Q+ D +R + Sbjct: 6 LGRKLSQREQAI------LTRQLASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEV 59 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SL+ ++++ R + + + G L L+ L+ + +R +K K+ Sbjct: 60 LGGHSLANALTQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEERNALKQKI 114 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIM 177 I + V+ L+ + P +NV + + +L + A + Sbjct: 115 LLAFTYPAIVTVIAFGI---VTFLLSYVVPQVVNVFASTKQQLPVLTIVMMALSDFVRHW 171 Query: 178 VMRLMINF 185 ++I Sbjct: 172 WWAILIGI 179 >gi|78484597|ref|YP_390522.1| general secretion pathway protein F [Thiomicrospira crunogena XCL-2] gi|78362883|gb|ABB40848.1| Type II secretion pathway protein F [Thiomicrospira crunogena XCL-2] Length = 404 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 59/181 (32%), Gaps = 15/181 (8%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D I + AG+P++DA+ + Q+ + + F I + Sbjct: 65 ADLSLMTRQIFTLLGAGMPMADALRSVANQAENKLMKRFATGIFEKVS----EGHSYAQA 120 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G+L E L+ ++ + ++ ++ K+++ + + Sbjct: 121 LTSSGFNLPRDYVATVRAGEESGHLVEVLSRMAESIEKQEKIRKKMRSALIYPTLMVVMA 180 Query: 134 GSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLL---------GVAAAFMLIGIMVMRLM 182 ++ + V + + + P LL IG++V+ M Sbjct: 181 VAIILFLMAFVVPKVVSVFDNMNQNLPPLTQGLLNTSDFLDQHWGWLLLGSIGLIVVYKM 240 Query: 183 I 183 + Sbjct: 241 L 241 >gi|220931443|ref|YP_002508351.1| Tfp pilus biogenesis protein PilC [Halothermothrix orenii H 168] gi|219992753|gb|ACL69356.1| Tfp pilus biogenesis protein PilC [Halothermothrix orenii H 168] Length = 401 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 58/170 (34%), Gaps = 12/170 (7%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISR 71 D + AG+ + +A+ ++ Q P E R + E G SL++++ + Sbjct: 62 TKDLVLFTQQFSVLLNAGISLVEALDIMYDQVEHPRLKEVVRSIQEDVETGSSLTDALLK 121 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P + + GG L + L LS + + +KV++ Sbjct: 122 HPDVFP-----ELYCQMVKAGEAGGVLDQVLEQLSAHYERQDEINSKVKSAMYYPV---I 173 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGIMV 178 ++ V L+ P ++++ + L + + + L Sbjct: 174 LLVVAVGVVIFLMTRVVPQFISLFSSMDVELPLPTRILIKLSTFLSSYWW 223 Score = 37.4 bits (85), Expect = 0.83, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 42/136 (30%), Gaps = 5/136 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + + +G+ + A+A++ + F VI +S S+SR + Sbjct: 271 FTNTLSILLTSGIDIISALAIVEEVVGN---KVFSDVISRSRTQVSEGISLSRPLDESG- 326 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 E + + G+L L +S +E + + F Sbjct: 327 -EFPRMVIQMINVGEEAGSLDNMLQKVSDFYDKEVETSINNTVSLIEPLMIVVLAVIVGF 385 Query: 139 CVSTLVYFTSPGYMNV 154 V +++ Y Sbjct: 386 IVMSIILPMFEMYEQF 401 >gi|145600186|ref|YP_001164262.1| type IV pilin biogenesis protein [Yersinia pestis Pestoides F] gi|294505133|ref|YP_003569195.1| type II secretion system protein [Yersinia pestis Z176003] gi|108774474|gb|ABG16993.1| type II secretion system protein [Yersinia pestis Nepal516] gi|108780833|gb|ABG14891.1| putative type II secretion system protein [Yersinia pestis Antiqua] gi|145211882|gb|ABP41289.1| type II secretion system protein [Yersinia pestis Pestoides F] gi|262363194|gb|ACY59915.1| type II secretion system protein [Yersinia pestis D106004] gi|262367126|gb|ACY63683.1| type II secretion system protein [Yersinia pestis D182038] gi|294355592|gb|ADE65933.1| type II secretion system protein [Yersinia pestis Z176003] Length = 378 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 56/177 (31%), Gaps = 10/177 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72 + + ++AGLP+ +++ ++ ++ D + + G SLSE + + Sbjct: 38 ERLVAMTRQLATLLQAGLPLVNSLQLLAKEADDSAWRCLLDEISQQVAQGQSLSEVMEQY 97 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + +L GNL + L ++N+ KV + Sbjct: 98 P-----HVFPRLYPPVVAVGELTGNLEQCCTQLVHHQERQQNLHKKVIKALKYPVVVCIV 152 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHM--LLGVAAAFMLIG--IMVMRLMINF 185 + + +V G LL ++ G + ++ ++ Sbjct: 153 ALVVSVIMLVMVLPEFAQIYQSFDTPLPGLTASLLWLSTFLTFYGPYLALIIAIVCI 209 Score = 41.3 bits (95), Expect = 0.059, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 36/133 (27%), Gaps = 5/133 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + + +AGLP+S + + + R I+ Q +S+ I Sbjct: 244 LSQIFQTLAITQQAGLPLSAGLDAAARSIHNYNYQQALRCIQKQ-----ISQGIPLYTTL 298 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + G+ L L+ + + A +E I Sbjct: 299 NQHPLFPAICQQLIRVGEESGSQDVLLEKLACWHQQQTQNLADNVTQMLEPLLMLIIGSI 358 Query: 136 LPFCVSTLVYFTS 148 + V + Sbjct: 359 VGVLVIAMYLPIF 371 >gi|327400021|ref|YP_004340860.1| Type II secretion system F domain-containing protein [Archaeoglobus veneficus SNP6] gi|327315529|gb|AEA46145.1| Type II secretion system F domain protein [Archaeoglobus veneficus SNP6] Length = 627 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 20/155 (12%), Positives = 61/155 (39%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + +R K + P+ L + +GL + A+ ++ + + SE ++ + Sbjct: 404 LVEIRNRRVRKIEEHIPDFLKQLASLNESGLNIVSAIRILSTSNLGVLTSEIIKIRKDLE 463 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ LS+++ R R + V+ ++++ + G + +AL + + +K +V+ Sbjct: 464 WGMLLSDALKRFERRIGSMTVTKVTSILLRAMEAAGTIKDALFTAATDAQLYLELKKRVR 523 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ + ++ + + Sbjct: 524 NEMFVYIVVIYMTFGVFLFTIFVLSNNFMQIFSKM 558 Score = 55.9 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 68/181 (37%), Gaps = 6/181 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQHL- 61 R + FP+ +++++ R G+ V + VI + S V EF ++ + Sbjct: 121 ASHRRKQIEVVFPHVVNMMLGMSRGGISVLEMCRVIAEEVSVTGEVGKEFAVIVNGVEMF 180 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 L ++ + P Q + F + G LSE L S+ L D + + Sbjct: 181 HKDLISAMKYVASTTPSQRFADFLDDFVSVIEGSGRLSEFLDFKSKHLMDEREKYQDLFL 240 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 S+ A ++ + + L+ F M +L + M L + + G+ + L Sbjct: 241 NSLGILAEVYVAALVVAPLFMLIIFVV---MGMLGSTTMHLMQLLIYLYMPIGGLAFIWL 297 Query: 182 M 182 + Sbjct: 298 L 298 >gi|312794851|ref|YP_004027773.1| general secretion pathway protein F [Burkholderia rhizoxinica HKI 454] gi|312166626|emb|CBW73629.1| General secretion pathway protein F [Burkholderia rhizoxinica HKI 454] Length = 405 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 67/180 (37%), Gaps = 13/180 (7%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSE 67 + + + AGLP+ +A+AV+ Q+ + +R + G SL+ Sbjct: 61 RKLSQREQALFTRQLASLLIAGLPLDEALAVLTDQAEREYIRELIAAIRAEVLGGQSLAG 120 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++++ R + + + G L L+ L+ + R +++K+Q Sbjct: 121 ALAQHPR-----DFPDIYRALVSAGEHTGKLGLVLSRLADYIEQRNALRSKIQLAFTYPA 175 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI----GIMVMRLMI 183 + V+ L+ + P ++V + + LL V + G + L++ Sbjct: 176 ---IVTLVAFGIVTFLLSYVVPQVVSVFASTKQQLPLLTVMMMSLSSFVRHGWWAILLIV 232 >gi|319791843|ref|YP_004153483.1| general secretion pathway protein f [Variovorax paradoxus EPS] gi|315594306|gb|ADU35372.1| general secretion pathway protein F [Variovorax paradoxus EPS] Length = 412 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 58/169 (34%), Gaps = 13/169 (7%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVR 74 + V +GLP+ A+ + ++ +P R+ + + G + ++S R Sbjct: 75 LAVWTRQLAGLVSSGLPLERALTALTDEAESEPQRNLVASLRAEVNAGSPFARALSAHSR 134 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 E S T + + GNL L L+ L +R+ ++ K+ ++ + Sbjct: 135 -----EFSPIYTAVIGAGEQSGNLGLVLDRLADDLEERQALQQKLVGAALYPA---IVTL 186 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI----MVM 179 V LV + P V R L + G+ M Sbjct: 187 VAIVIVIFLVSYVVPQVAQVFAGTKRSLPFLTTVMLSLSAGVRNYGWWM 235 Score = 37.4 bits (85), Expect = 0.91, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 40/130 (30%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ S+ + G L+ ++++ R+ Sbjct: 281 FASTLAMLATAGVPILRALQAAAETLSNRAMRADALDALVLVREGAPLASALAQKKRFPG 340 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + + G L L + L +A A +E + G + Sbjct: 341 ------LVSMFARLGEQTGTLPLMLQRAANQLGAEVQRRAMHLATILEPLLIVAMGGVVM 394 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 395 LIVLAVMLPI 404 >gi|326771892|ref|ZP_08231177.1| type II secretion system protein F domain-containing protein [Actinomyces viscosus C505] gi|326638025|gb|EGE38926.1| type II secretion system protein F domain-containing protein [Actinomyces viscosus C505] Length = 317 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 53/146 (36%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KR ++ P+ ++++ +V AG A+ IV + E + Sbjct: 162 LSRAVAKRLSRIEAQLPDVVELLALAVGAGQGPVPAIERIVALGRGDLVDELSSTLTDIR 221 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G LS ++ RM R + V+ I V + G L+E L + + +R+ + Sbjct: 222 SGTVLSTALDRMERRVGSVHVTRLCEAIIVALERGTPLAEVLRSQATDVREAARQDLMEE 281 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146 E ++ + F Sbjct: 282 GGRREIAQMVPVVFLVLPITVVFALF 307 >gi|295399389|ref|ZP_06809371.1| Type II secretion system F domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|294978855|gb|EFG54451.1| Type II secretion system F domain protein [Geobacillus thermoglucosidasius C56-YS93] Length = 417 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 58/173 (33%), Gaps = 6/173 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 DF L ++AG+ + D+ ++ Q+ ++ V E+ G LS + ++ Sbjct: 77 QDFVIFLRQFATLIKAGVSIVDSTRILAEQTESKALKKALMEVEESLRAGNPLSAAAAKH 136 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R P + + GGN+ E L L+ + K+ + A A I Sbjct: 137 PRIFP-----AMFVNMVKAGEAGGNMDETLERLADHFEKMHRTRQKIVSALTYPIAVAII 191 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 ++ + V T + + A+ ++ + + Sbjct: 192 AVAVVIFLLVSVVPTFVEMFADFHAELPAITKFVLRASEVMQTYWWLVAIALI 244 >gi|284164235|ref|YP_003402514.1| type II secretion system F domain protein [Haloterrigena turkmenica DSM 5511] gi|284013890|gb|ADB59841.1| Type II secretion system F domain protein [Haloterrigena turkmenica DSM 5511] Length = 697 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 18/155 (11%), Positives = 54/155 (34%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + + L + S GL + +++ + +S + EF + + G SL Sbjct: 462 RHRNSVVSQLSEDLRKLSSSNDTGLTLLESLKAVSDTTSGKLAREFEMMHTKVNYGTSLK 521 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + ++ + +I+ + +S+ L +R + +++ + ++ + Sbjct: 522 QALIEFNNKYHIPRLARTTRLITEAQEASNQISDVLRTAARASENHDDIERERKSRTRMQ 581 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + V ++ M L G Sbjct: 582 VVIIIMTFMTVLAVIAILKTQFIDTMAGLGESTGG 616 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 21/179 (11%), Positives = 59/179 (32%), Gaps = 3/179 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHL 61 R + +++ + GL + + + + V EF+ +++ Sbjct: 147 RASTRRRQINMLLTDSVSFMYALSVGGLNQLEIIEAMAQADDTYGEVAKEFQSIVKETEY 206 Query: 62 G-LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + +I + P E+S F T + GG++ L + + ++ Sbjct: 207 FDIDYRTAIRKQALETPSDELSQFLTDMLSIVNSGGDMESFLEDKKEKHMRTAKQEQELT 266 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++E ++ SL + ++ + + +M + +G ++M Sbjct: 267 LETLELFGEMYMTLSLFPLLLIIIMVVMQMIPQASVTNTMLYMTVYALIPLTGVGFLIM 325 >gi|134291849|ref|YP_001115618.1| type II secretion system protein [Burkholderia vietnamiensis G4] gi|134135038|gb|ABO59363.1| type II secretion system protein [Burkholderia vietnamiensis G4] Length = 327 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 70/148 (47%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + I KR +DFP+ALD++ V AGL + A+ + + S+ V E ++ Sbjct: 160 LSRRITKRQRTIFEDFPDALDLLTVCVEAGLGLDAALMRVSEELRFRSEVVSGELDLLLL 219 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + ++++ F ++ + G +++E+L LS +LR R+ M+A Sbjct: 220 EMRSGFTKDTALRNLALRTGVEDIESFCAMLIQADRFGTSVAESLRVLSDMLRTRRRMRA 279 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A + K +I + + ++ Sbjct: 280 EERAARIALKLLFPLIFCIFPALMGVLL 307 >gi|260893568|ref|YP_003239665.1| Type II secretion system F domain protein [Ammonifex degensii KC4] gi|260865709|gb|ACX52815.1| Type II secretion system F domain protein [Ammonifex degensii KC4] Length = 409 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 22/179 (12%), Positives = 61/179 (34%), Gaps = 8/179 (4%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLS 66 R D + AG+P+ ++ V+ Q+ + ++ V G SL+ Sbjct: 58 RLKAKSRDMAVLTRQFATLLEAGVPLLTSLRVLERQTKNRQLKKCLAEVAAEVQKGRSLA 117 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E+ + + + + G L +AL L+ + ++ K++ + Sbjct: 118 EAFG-----HHREILPEIFLSMVAVGETSGTLDKALGRLAAYFERQADLTDKLKTATSYP 172 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLIN--DPRGHMLLGVAAAFMLIGIMVMRLMI 183 A + + L+ + +++GV+ + +++ +++ Sbjct: 173 LLVAGVALVTAIALLVLIVPIFADIFRQMNVPLPLPTRIVMGVSYGLVHYWYLILAVLV 231 >gi|332186805|ref|ZP_08388547.1| general secretion pathway protein F [Sphingomonas sp. S17] gi|332013138|gb|EGI55201.1| general secretion pathway protein F [Sphingomonas sp. S17] Length = 407 Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 15/173 (8%), Positives = 44/173 (25%), Gaps = 5/173 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + R P+ +++ I Q+ + Sbjct: 62 RARMSVKQLTLFTRQLATLNRV-SPLEESLRTITRQTEQERVRAIVATVHQGVTEGRR-- 118 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + + + G L L L+ +L + ++ K+ Sbjct: 119 --LADAMAREPKSFPPLYRAMVAAGESSGTLPTILERLAALLERQAEIRGKLITALAYPT 176 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A + + + V + + + + + + +L+G + Sbjct: 177 ILAVVALGVVTALMMFVVPQVVEQFDTVGQELPFLTRMVIGVSDLLVGWWWLM 229 >gi|104783252|ref|YP_609750.1| type II secretion system protein F [Pseudomonas entomophila L48] gi|95112239|emb|CAK16966.1| putative type II secretion system protein F [Pseudomonas entomophila L48] Length = 400 Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 53/171 (30%), Gaps = 7/171 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + V AG+P+ DA+A + Q P V L L Sbjct: 53 RRQRLSRAQLCELTRQLATLVGAGIPLVDALATLERQLRQPALHAV-LVALRGSLAEGLG 111 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + S + P + + G L + LA L+ L + + K + + Sbjct: 112 LARSLARQGQPFTG---LYCALVEAGERSGRLGQVLARLADHLEQVQRQRHKARTALIYP 168 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++G V L+ F P + + + + G++ Sbjct: 169 A---VLMGVSLAVVVGLMTFVVPKLTEQFAHSGQSLPFITSLLIGLSQGLV 216 Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 15/128 (11%), Positives = 38/128 (29%), Gaps = 7/128 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + +G+ + +A+ V + +V G SL ++ ++ P Sbjct: 270 RSLAILCGSGVALLEALQVATETVGNRRIRVAMEQVRLQVQGGTSLHRALDGAGQFPP-- 327 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + G L++ L ++ + E + G + F Sbjct: 328 ----LLVNMVGSGEASGTLADMLERVADDQERGFARQVDTAMALFEPLMILVMGGVVLFI 383 Query: 140 VSTLVYFT 147 V ++ Sbjct: 384 VLAVLLPI 391 >gi|81300878|ref|YP_401086.1| fimbrial assembly protein PilC-like [Synechococcus elongatus PCC 7942] gi|81169759|gb|ABB58099.1| fimbrial assembly protein PilC-like [Synechococcus elongatus PCC 7942] Length = 410 Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 59/149 (39%), Gaps = 6/149 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRM 72 D + V AG+P+ A+ ++ Q+ + +R +++ GL+LS+S+ + Sbjct: 68 KDMALFSRQLSSLVDAGVPIVRALGLLTEQTRNPKLRKTLKQINIDVQEGLNLSDSMRKF 127 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + GG L + L LS++L D ++ ++++ A I Sbjct: 128 PK-----VFDGLYVAMIQAGETGGVLDDVLNRLSKLLEDMSRLRNQMKSAMTYPMAVFVI 182 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + ++ + T G + G Sbjct: 183 AILVFLGMTIFIIPTFAGIFEDQGAELPG 211 Score = 39.7 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 14/133 (10%), Positives = 36/133 (27%), Gaps = 5/133 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 RAG+P+ A+ ++ + + + + + R PL Sbjct: 278 FCRTFGSLTRAGVPIMTALEIVRDTAGNQAIARSIDAARMEVQTGGMMSVALSRYRVFPL 337 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G L + ++ D K +E + G + Sbjct: 338 -----MALSMITIGEETGELDTMVNKVADFYEDEVEQAVKGLTSLLEPIMIVLVGGIVGS 392 Query: 139 CVSTLVYFTSPGY 151 + + + Sbjct: 393 ILLAMYLPMFSIF 405 >gi|160897511|ref|YP_001563093.1| type II secretion system protein [Delftia acidovorans SPH-1] gi|160363095|gb|ABX34708.1| type II secretion system protein [Delftia acidovorans SPH-1] Length = 334 Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 69/158 (43%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS---EFRRVIE 57 ++ K R + +++ P +D++ GL V ++ ++ + +R E + Sbjct: 170 LRSRAKGRREQVVEELPLFVDLLRLLQGVGLSVDQSLQILASEFKSVLRVISGELALANQ 229 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + G + +S RMV ++S ++ + GG + E L S LR+++ Sbjct: 230 LYNTGRTREQSFQRMVNMSADDDMSAIVNLLVQVDKHGGAVQEPLREFSIRLREKRQASF 289 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 K + S+ K + ++ +L + LV PG++ V+ Sbjct: 290 KEKIGSITVKMTGVMVLTLLPAL--LVITAGPGFLAVI 325 >gi|57641786|ref|YP_184264.1| hypothetical protein TK1851 [Thermococcus kodakarensis KOD1] gi|57160110|dbj|BAD86040.1| hypothetical membrane protein, conserved [Thermococcus kodakarensis KOD1] Length = 305 Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 28/188 (14%), Positives = 70/188 (37%), Gaps = 10/188 (5%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + KR + P+A + S+RAG+ S+A+ + + EF+R + + G Sbjct: 86 WRLTKRIDEIEKSLPDAFFYLASSLRAGISFSEALEELTTAKFGALTEEFKRTVAEINKG 145 Query: 63 LSLSESISRMV-RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 ++++ R Q + ++ + G +S+ L ++ +R+ ++ + +A Sbjct: 146 RPTADALRAFALRNKRSQVLYRSMMIVIEALERGAPMSDVLMYVANDVREILRIQQERKA 205 Query: 122 LSMEAKASAWIIGSLPFCVSTLVY------FTSPGYMNVLINDPRGHMLLGVAA---AFM 172 + I + + +SP + D +L+ Sbjct: 206 STGMQIMFFTITSGFVGPLILGIVTQVMSSMSSPELGIMFPMDSMTTILMAFVVVQAVLS 265 Query: 173 LIGIMVMR 180 +G+ ++R Sbjct: 266 GLGMGIIR 273 >gi|312110052|ref|YP_003988368.1| type II secretion system protein F [Geobacillus sp. Y4.1MC1] gi|311215153|gb|ADP73757.1| Type II secretion system F domain protein [Geobacillus sp. Y4.1MC1] Length = 403 Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 58/173 (33%), Gaps = 6/173 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 DF L ++AG+ + D+ ++ Q+ ++ V E+ G LS + ++ Sbjct: 63 QDFVIFLRQFATLIKAGVSIVDSTRILASQTESKALKKALMEVEESLRAGNPLSAAAAKH 122 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R P + + GGN+ E L L+ + K+ + A A I Sbjct: 123 PRIFP-----TMFVNMVKAGEAGGNMDETLERLADHFEKMHRTRQKIVSALTYPIAVAII 177 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 ++ + V T + + A+ ++ + + Sbjct: 178 AVAVVIFLLVSVVPTFVEMFADFHAELPAITKFVLRASEVMQTYWWLVAIALI 230 >gi|261823000|ref|YP_003261106.1| type IV pilin biogenesis protein [Pectobacterium wasabiae WPP163] gi|261607013|gb|ACX89499.1| Type II secretion system F domain protein [Pectobacterium wasabiae WPP163] Length = 401 Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 53/165 (32%), Gaps = 6/165 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 + + + ++AGLP+ +A+ ++ Q R R + G SLSE++ Sbjct: 58 REQLGELIKQLAALLQAGLPLLEALKLVSEQHERPGWRCILRDIRTHVAQGNSLSEALHD 117 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P+ + +L G L L++ + ++ KV Sbjct: 118 YPHIFPV-----LYRSLIAVGELTGKLDVCCLQLAQQQEKQSRLQQKVIKALRYPCFVLV 172 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 I + + TLV + + A ++ G Sbjct: 173 IAMLVSMMMLTLVLPEFATLYSSFNTPLPWFTRQLLHLADIIAGY 217 >gi|222832288|gb|EEE70765.1| predicted protein [Populus trichocarpa] Length = 225 Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 56/152 (36%), Gaps = 9/152 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V +GLP+ A+A + ++ + + G + + ++++ R E Sbjct: 1 MAGLVGSGLPIERALAALSEEADDPRQHHLVAALRAEVNAGSTFARALAQHPR-----EF 55 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S + + G+L L L+ L R+ +++K+ ++ + V Sbjct: 56 SDIYCAVIGAGEASGSLGPVLERLADDLESRQALQSKLIGAALYPA---IVTLVAIVIVL 112 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 LV + P +V R L VA + Sbjct: 113 FLVSYVVPQVASVFAGTKRALPWLTVAMLALS 144 >gi|85712757|ref|ZP_01043801.1| Type II secretory pathway [Idiomarina baltica OS145] gi|85693397|gb|EAQ31351.1| Type II secretory pathway [Idiomarina baltica OS145] Length = 417 Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 21/165 (12%), Positives = 52/165 (31%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 D + AG+P+ A+ + + + + R V G +LS +++ Sbjct: 75 DQLIIFCRQMYSLTNAGIPILRAIEGLADTTQNKRLERALRDVHSQLERGRTLSAGMAQH 134 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + S I + G L E+ L+ L ++ + +++A + Sbjct: 135 PK-----VFSRLIVAIVHVGENTGQLEESFEQLALYLEKEQDTRKRIKAATRYPTFVMIA 189 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + F ++ V T + + + + + Sbjct: 190 LVVALFVLNIFVIPTFANMFSRFNVELPWATRALLGTSEFFVAYW 234 Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 14/133 (10%), Positives = 40/133 (30%), Gaps = 7/133 (5%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74 + AG+P++ A++++ + + + + T G +LS + + Sbjct: 280 LSRFARSFAVMLSAGVPLTQALSLVSEAVDNAHMERKILDIRRTIERGENLSRAARQSKL 339 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + P + V + G L ++ + K +E ++ Sbjct: 340 FTP------LVLQMIVVGEETGRSDTLLKEVADYYERETDYDLKTLTARIEPVMIGFVAV 393 Query: 135 SLPFCVSTLVYFT 147 + + Sbjct: 394 LVLILALGIFTPM 406 >gi|170022929|ref|YP_001719434.1| type II secretion system protein [Yersinia pseudotuberculosis YPIII] gi|169749463|gb|ACA66981.1| type II secretion system protein [Yersinia pseudotuberculosis YPIII] Length = 277 Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 4/157 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 +K+ + KRT L P +DI V++G+ + +++ + + + Sbjct: 117 IKNALTKRTNTLLKSLPFFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTK 176 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + L +I + Y P E+ F + + G + E L +LS+ +R+ + + + Sbjct: 177 RAEINGLENAIKELQYYSPAIEMKMFCSTLQYSLSFGSTVYEQLTHLSQDMREMQLLMTE 236 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + K + + + LV SP + +L Sbjct: 237 ESISKLSTKLTLPLFLFILIPFVLLV--ISPSILELL 271 >gi|149374906|ref|ZP_01892679.1| general secretion pathway protein F [Marinobacter algicola DG893] gi|149360795|gb|EDM49246.1| general secretion pathway protein F [Marinobacter algicola DG893] Length = 403 Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 11/178 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 D + +++G+P+ A++ QSS +RS + G SL++S+ Sbjct: 63 TADLALVTRQLATLIQSGIPIEQALSAAAQQSSKPRIRSMLIAIRAKVMEGYSLADSLGE 122 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 R P + G+L L L+ R+ + K+Q ++ Sbjct: 123 FPRAFP-----RLYRSTVAAGEHAGHLDLVLNRLADYTEARQEARQKIQLAAIYPI---I 174 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIMVMRLMINFDV 187 + V L+ + P + V + + L A A +G + L+I V Sbjct: 175 LSVVAIAIVVFLLTYVVPDIIEVFVKQGQELPALTAAMLAVSDFLGDYGIYLLILIVV 232 Score = 37.8 bits (86), Expect = 0.78, Method: Composition-based stats. Identities = 18/126 (14%), Positives = 40/126 (31%), Gaps = 7/126 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +G+P+ +A+ + S+ +R E R G SL S+ + + P+ Sbjct: 276 LSILTTSGVPLVEAMRIAGEVLSNDHLRQELRDAARKVSEGGSLHRSLDQTGYFPPM--- 332 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L L + + + K E + + V Sbjct: 333 ---MLHMIASGEASGELDSMLERTATMQENTLQSKIAAIVGLFEPMMLLLMGVVVLIIVL 389 Query: 142 TLVYFT 147 ++ Sbjct: 390 AIMLPI 395 >gi|83648785|ref|YP_437220.1| type II secretory pathway subunit PulF [Hahella chejuensis KCTC 2396] gi|83636828|gb|ABC32795.1| Type II secretory pathway, component PulF [Hahella chejuensis KCTC 2396] Length = 409 Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 54/172 (31%), Gaps = 6/172 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLS 66 R LD+ + RAG+P+ A+ + + S+ + V G++L+ Sbjct: 62 RKKVTLDELVILCRQMHALSRAGIPIIRAIRGLAESTRSETLAEVLDDVARRLEGGVNLA 121 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ R + + + + G L E+ L + ++ + +V Sbjct: 122 TAMRAHPRT-----FNELFVSMILVGENTGQLEESFRQLGENIELERDTRKRVGQAVRYP 176 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 I V+ V G D + VA + +I Sbjct: 177 IMVVVAITIALLVVNFFVIPAFAGVFAKFGADLPLPTKILVATSNFMINYGW 228 Score = 39.7 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 39/133 (29%), Gaps = 5/133 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + AGLPV+ A+ ++ + I G+ +++ R R Sbjct: 272 ALSRFSRNFSMMLAAGLPVTSALTLVAEAVDN---KYVGSAIADMRNGIERGDTLVRTAR 328 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + S + + G++ L ++ + K A S+E + Sbjct: 329 ATNM--FSPLVMQMLAVGEETGSVDSLLVEVANFYDEEIEYSLKRLAESIEPILLVVMGV 386 Query: 135 SLPFCVSTLVYFT 147 + + Sbjct: 387 MVLILALGVFLPM 399 >gi|85858125|ref|YP_460328.1| general secretion pathway protein F [Syntrophus aciditrophicus SB] gi|85721216|gb|ABC76159.1| general secretion pathway protein F [Syntrophus aciditrophicus SB] Length = 403 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 22/172 (12%), Positives = 49/172 (28%), Gaps = 6/172 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLS 66 + I + +GLP+ + ++ +++ + E G SL+ Sbjct: 57 KQKVKEKQIVVFARIFSTMINSGLPLIQCLDLLAQQETNKTFAKAITAIKEDIEGGSSLT 116 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + + + GG L L LS + +K KV+ Sbjct: 117 DALKKYPEI-----FDELFVNLIAAGESGGILDVILGRLSTYMEKAMKLKRKVKGALTYP 171 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + I + + V + V A+ + V Sbjct: 172 ISVLVISIGVVTLLLLKVIPVFQKLFADMGGALPAPTQFLVNASAFMQNYFV 223 >gi|170025715|ref|YP_001722220.1| type IV pilin biogenesis protein [Yersinia pseudotuberculosis YPIII] gi|186894063|ref|YP_001871175.1| type IV pilin biogenesis protein [Yersinia pseudotuberculosis PB1/+] gi|169752249|gb|ACA69767.1| type II secretion system protein [Yersinia pseudotuberculosis YPIII] gi|186697089|gb|ACC87718.1| type II secretion system protein [Yersinia pseudotuberculosis PB1/+] Length = 378 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 56/177 (31%), Gaps = 10/177 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72 + + ++AGLP+ +++ ++ ++ D + + G SLSE + + Sbjct: 38 ERLVAMTRQLATLLQAGLPLVNSLQLLAKEADDSAWRCLLDEISQQVAQGQSLSEVMEQY 97 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + +L GNL + L ++N+ KV + Sbjct: 98 P-----HVFPRLYPPVVAVGELTGNLEQCCTQLVHHQERQQNLHKKVIKALKYPVVVCIV 152 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHM--LLGVAAAFMLIG--IMVMRLMINF 185 + + +V G LL ++ G + ++ ++ Sbjct: 153 ALVVSVIMLVMVLPEFAQIYQSFDTPLPGLTASLLWLSTFLTFYGPYLALIIAIVCI 209 Score = 42.4 bits (98), Expect = 0.030, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 37/133 (27%), Gaps = 5/133 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + + +AGLP+S + + + R I+ Q +S+ I Sbjct: 244 LSQIFQTLAITQQAGLPLSAGLDAAARSIHNYNYQQALRCIQKQ-----ISQGIPLYTTL 298 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + G+L L L+ + + A +E I Sbjct: 299 NQHPLFPAICQQLIRVGEESGSLDVLLEKLACWHQQQTQNLADNVTQMLEPLLMLIIGSI 358 Query: 136 LPFCVSTLVYFTS 148 + V + Sbjct: 359 VGVLVIAMYLPIF 371 >gi|291523558|emb|CBK81851.1| Type II secretory pathway, component PulF [Coprococcus catus GD/7] Length = 404 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 21/157 (13%), Positives = 59/157 (37%), Gaps = 9/157 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 D V AG+P+ +A+ ++ Q+ + ++ V+ G +L++S+ Sbjct: 63 RDLSVFCRQFVSITEAGVPMKEALQMLAEQTENKWLKRAIAEVLTNVEKGNTLADSMMAF 122 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P + + G+L + + ++ ++A + ++ + Sbjct: 123 PDIFPG-----MLVNMVRAGEASGSLELSFSRMATHFEKEAKLRATIMKATIYPI---IL 174 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 I + V+ ++ F P ++++ + L +A Sbjct: 175 ICAAIGVVAVMLLFVIPIFVDMFADLDVQMPALTLAV 211 Score = 42.8 bits (99), Expect = 0.025, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 7/136 (5%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRY 75 + + AGL + + ++ G + + F + E G+ LSE + + Sbjct: 269 AQFARTMSTLLSAGLSTTSCLDIVAGIMKNVHYANAFLKAKEEVMKGIPLSEPLQTAGIF 328 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P+ ++ + GNL E L L+ + M + +ME ++ Sbjct: 329 PPM------VYHMTGIGEETGNLEEMLEKLADYYDEEVEMTTQSILAAMEPLIIVFMALI 382 Query: 136 LPFCVSTLVYFTSPGY 151 + V ++ Y Sbjct: 383 VGTLVIAVILPIGAMY 398 >gi|262275464|ref|ZP_06053274.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Grimontia hollisae CIP 101886] gi|262220709|gb|EEY72024.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Grimontia hollisae CIP 101886] Length = 288 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 70/157 (44%), Gaps = 4/157 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV--IET 58 ++ + K P LDI+ V+ G+ + ++ + + + + + + Sbjct: 133 LEMRRRALARKITRQLPYLLDIMGVCVQTGMTIESSIFYLTTEMAAFDKDIAYVLKRLRD 192 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + L +++ + ++P E+ F ++ Q G ++ EAL+ L++ +R+ + + + Sbjct: 193 RAQTKGLEKALLELNEHVPAPEMHSFVMTLTQSMQHGTSIYEALSILAKDIREIQLLSLE 252 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 +A + +K S +I + + L+ PG M +L Sbjct: 253 EKAGKLSSKMSVPLILFIMMPIVILITA--PGIMRML 287 >gi|257790324|ref|YP_003180930.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|325830281|ref|ZP_08163738.1| type II secretion system protein F domain protein [Eggerthella sp. HGA1] gi|257474221|gb|ACV54541.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|325487748|gb|EGC90186.1| type II secretion system protein F domain protein [Eggerthella sp. HGA1] Length = 313 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 59/152 (38%), Gaps = 1/152 (0%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESI 69 P+A++++ ++ AG P+ + P+ EF V +L S E++ Sbjct: 162 AIELALPDAMELLGIAIAAGSPIEQCFREVAESMDGPLAREFSLVDREVNLLGRSREEAL 221 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + + Q+VS F+ + G +L+E LA + + R+ +A + M K Sbjct: 222 EHLGQRCRSQDVSAFTAQLMQAVSQGSSLTEGLAVQAALARETAQAEAMERIRKMPTKLD 281 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + LV + + +ND G Sbjct: 282 IVLSLCFLPPTVALVVVPTVVNLLNFLNDSMG 313 >gi|262370086|ref|ZP_06063413.1| type 4 fimbrial assembly protein [Acinetobacter johnsonii SH046] gi|262315125|gb|EEY96165.1| type 4 fimbrial assembly protein [Acinetobacter johnsonii SH046] Length = 408 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 15/161 (9%), Positives = 44/161 (27%), Gaps = 6/161 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLS 66 + D + ++AG+P+ ++ +P E + G + + Sbjct: 63 KKKVTTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFA 122 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + + + + G L L ++ + +K K++ Sbjct: 123 GALKKYPQ-----YFDNLFCSLVESGEQSGALETMLDRVAVYKEKSELLKQKIKKAMKYP 177 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 + + + V + D + V Sbjct: 178 ATVVVVAVIVTIILMVKVVPVFQELFSSFGADLPAFTQMVV 218 Score = 35.1 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 41/129 (31%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG+P+ DA+ G +++ V E ++ E G L ++ + Sbjct: 280 RTLSTTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVATGQQLQFAMRATNK----- 334 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + + G L L ++ + + ME A + + Sbjct: 335 -FPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGVLVGGL 393 Query: 140 VSTLVYFTS 148 V + Sbjct: 394 VIAMYLPIF 402 >gi|253701804|ref|YP_003022993.1| type II secretion system protein [Geobacter sp. M21] gi|251776654|gb|ACT19235.1| type II secretion system protein [Geobacter sp. M21] Length = 302 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 62/148 (41%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + +K R + P+ LD++ V AGL + A+ +P+ E R+V Sbjct: 143 LHLKVKARQLEIFHTLPDILDLVTLCVEAGLSMDAALIRTTETPQFRDNPLAIEIRQVTM 202 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G ES+ M ++++ F+T+++ + G +LS AL S LR ++ A Sbjct: 203 EVRAGKPRVESLKDMALRTRVEDIGSFTTMVTQAERFGTSLSHALRTFSDELRTKRRQTA 262 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + A K +I + + ++ Sbjct: 263 EEAAAKTTIKLIFPLIMFIFPALLVVIL 290 >gi|167581954|ref|ZP_02374828.1| Bacterial type II secretion system protein F domain [Burkholderia thailandensis TXDOH] Length = 271 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 62/146 (42%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + +R P+ALD++V AG ++ A+ + + P+ EF + Sbjct: 111 LGFAVARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELGTICPPLADEFSVCAD 170 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + +++ M + L + T + Q G ++++L LSR R + + Sbjct: 171 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 230 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K + ++ + V+ + Sbjct: 231 EEKAAKLAPKMTLPMMLFVMPTVALI 256 >gi|304311188|ref|YP_003810786.1| type II secretion system protein [gamma proteobacterium HdN1] gi|301796921|emb|CBL45134.1| type II secretion system protein [gamma proteobacterium HdN1] Length = 319 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 64/148 (43%), Gaps = 1/148 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + I +R L +FP LD++V +RAGL + A+ + +R EF +V+ Sbjct: 152 LSDQINRRRRITLKEFPFMLDLLVLGMRAGLNYAAALGHAIEAMPNGVIRDEFSKVLREI 211 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G S E++ + M L+ +S F ++ + GG + L + R+ + A++ Sbjct: 212 RAGKSRREALLTLADRMNLEAISNFVAAVNQVEETGGEIVSVLMVQAEQRRNERFTAAEI 271 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFT 147 A + ++ L + L+ F Sbjct: 272 AANKAPIRMLIPMMLFLFPIIFMLLTFI 299 >gi|119025148|ref|YP_908993.1| hypothetical protein BAD_0130 [Bifidobacterium adolescentis ATCC 15703] gi|118764732|dbj|BAF38911.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703] Length = 256 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 5/159 (3%) Query: 26 SVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 SVR+G + A + Q + E R + S + Q + Sbjct: 98 SVRSGATLVQAFEEL--QGAPFAVPELTRFRIDMAV---RSRCSLQEQHKHVDQLGAELH 152 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 ++ QLG +S L ++ L+ R+ + +A+ ++ +LP L Sbjct: 153 AACTLSLQLGCEMSRCLEAVAASLKRRRLLDDLRANAFAMPQATVKLLMALPLLTVMLGE 212 Query: 146 FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + L+ D +G M LG A +G +R ++ Sbjct: 213 CMGAHPLRFLVEDVKGWMCLGFAGCCYAVGWYWIRRLMR 251 >gi|91777214|ref|YP_552422.1| putative type II secretion system protein F [Burkholderia xenovorans LB400] gi|91689874|gb|ABE33072.1| Putative type II secretion system protein F [Burkholderia xenovorans LB400] Length = 293 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 69/146 (47%), Gaps = 1/146 (0%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + + ++R A+ L P LD + +V AGL ++ A+ V + P+R E V+ Sbjct: 136 RDVRRRRVAQILRHLPIYLDFLTLAVEAGLNINGAIQKAVEKGPEGPLRRELEHVLRDLK 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 GL+ +E++ R+ + ++EV+ + ++G L+++L S R + +A+ Q Sbjct: 196 SGLNRTEALRRLDDRLRIKEVTNLVGTVVQAERMGSGLAKSLRFQSEQRRSERFQRAEKQ 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146 A+ K ++ + ++ F Sbjct: 256 AMEAPVKLVFPLLFFIFPITFIVLGF 281 >gi|319779646|ref|YP_004130559.1| Type II/IV secretion system protein TadC [Taylorella equigenitalis MCE9] gi|317109670|gb|ADU92416.1| Type II/IV secretion system protein TadC [Taylorella equigenitalis MCE9] Length = 267 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 3/156 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 +K I KR + + FP LD++ S+ +G + ++ ++ E I Sbjct: 111 IKRYISKRRTELSEIFPFFLDVLSVSLSSGQNFTMSLQYAFNSLPNGVLKDELGFTIREM 170 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G E+I M + L V + I QLG L+ A + +R ++ + A+ Sbjct: 171 QAGKPKLEAIDDMAQRSDLNVVKQWVNNIKQADQLGLQLASAFRAQASYIRKQRYLMAEK 230 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A K ++ + C ++ F P +M +L Sbjct: 231 LAFEAPVKMLFPLVFFIFPCTFIVLLF--PVFMQIL 264 >gi|318060836|ref|ZP_07979559.1| type II secretion system F protein [Streptomyces sp. SA3_actG] Length = 305 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 62/166 (37%), Gaps = 1/166 (0%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 ++ VRAG ++A+A V + + ++ G + ++ + R Sbjct: 131 LCGLLAGEVRAGSGPAEALAHAVN-ACGELGPARADILAAARFGGDVPAALRQAARVPGA 189 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + V G L+ L L R L ++ +A + A A+A+A ++ +LP Sbjct: 190 EGLVGLAACWRVALDRGAGLAVGLERLERALLADRDQRADLLAQLSGARATAGLLAALPL 249 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + VL G + L + + G+ ++ Sbjct: 250 LGLLLGSAVGAAPLRVLFGSAPGFVCLVIGSGLEAAGVWWCLWLVR 295 >gi|251780157|ref|ZP_04823077.1| bacterial type II secretion system protein F [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084472|gb|EES50362.1| bacterial type II secretion system protein F [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 400 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 20/179 (11%), Positives = 55/179 (30%), Gaps = 12/179 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D + AG+P+ + ++ Q+++ E + +E + Sbjct: 62 KDLSIFCRQFYTMLDAGVPILTCLNILTSQTTNKKLQETLKEVEDDVEKGGV----LSDA 117 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 ++ + + GNL + ++ + KV+ + + Sbjct: 118 MRKHIEVFPGLLVSLVAAGEASGNLDSIMLRMANHYEKENKVSNKVRNAMIYPI---ILG 174 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHM-----LLGVAAAFMLIGIMVMRLMINFDV 187 V ++ + P + ++ I LL +A+ M++ ++ V Sbjct: 175 LVAITAVVFILTYVMPTFTDLFIESGLSLPWSTRFLLWSSASLKAHWFMILLAIVGITV 233 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 19/146 (13%), Positives = 48/146 (32%), Gaps = 8/146 (5%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSL 65 +R + + + + +GLP+ A+ +++G + + +V E G SL Sbjct: 259 RRLNEMII-VSRFTRTLSTLLSSGLPLVQALDIVIGVIDNKIAEDAILKVKEKVVRGESL 317 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + S+ + + G+L + L + + + ME Sbjct: 318 NSSLRETG------IFPQMLYSMIKIGEETGSLDDILNKTADFYDEELEATIQTTVALME 371 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGY 151 + + F + +++ Y Sbjct: 372 PALIVIMGLIIGFIIISIMIPMFDSY 397 >gi|330958320|gb|EGH58580.1| general secretion pathway protein F [Pseudomonas syringae pv. maculicola str. ES4326] Length = 403 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 63/168 (37%), Gaps = 6/168 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 D + + + AGLP+ +A++ V Q+ + V G+ L+E+++ Sbjct: 63 DSDLASVTRQMASLLGAGLPLDEALSATVEQAERKHIIQTLGEVRTDVRSGMRLAEALAA 122 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 R + + + G+L++ + L+ + +R ++ K+ + Sbjct: 123 RPR-----DFPDIYRALIAAGEESGDLAQVMERLADYIEERNMLRGKILTAFIYPCVVGL 177 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + ++ + + V + D G L +AA+ + +M Sbjct: 178 VSIAIVIFLLSYVVPQVVSAFSQARQDLPGLTLAMLAASDFIRTWGLM 225 Score = 34.7 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 36/129 (27%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ A+ S+ S+ + + R+ + P Sbjct: 272 FASTLAILGSAGVPLLRALEAARQTLSNDRLSQSVSAATAKVREGVNLAAALRVEKVFPP 331 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L L ++ L +A +E + G + Sbjct: 332 -----LLIHLIASGEKTGALPPMLERAAQTLSRDIERRAMGMTALLEPLMIVIMGGVVLV 386 Query: 139 CVSTLVYFT 147 V ++ Sbjct: 387 IVMAVLLPI 395 >gi|331005864|ref|ZP_08329216.1| General secretion pathway protein F [gamma proteobacterium IMCC1989] gi|330420308|gb|EGG94622.1| General secretion pathway protein F [gamma proteobacterium IMCC1989] Length = 420 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 56/184 (30%), Gaps = 22/184 (11%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D + V++G+P+S+++ + QS D +++ +V GLSL++++S Sbjct: 82 KDLSLFTRQLASLVQSGMPLSESLQAVAKQSRKDAIKNVVLQVRSRVLEGLSLAQALSDY 141 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R + + G L L LS + ++++ + + Sbjct: 142 PRI-----FDSMYRAMVNAGEQSGFLGPVLERLSDYAETSHAARQQLKSAMVYPIILVLV 196 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR----------------GHMLLGVAAAFMLIGI 176 S+ + V + G L + Sbjct: 197 CISIVIALMVFVVPKITVVFTRAKQELPWPTELLINISDFLQNYGLYCLAALILLGVGVN 256 Query: 177 MVMR 180 +R Sbjct: 257 FWLR 260 >gi|271962054|ref|YP_003336250.1| Flp pilus assembly protein TadB-like protein [Streptosporangium roseum DSM 43021] gi|270505229|gb|ACZ83507.1| Flp pilus assembly protein TadB-like protein [Streptosporangium roseum DSM 43021] Length = 234 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 60/182 (32%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + KRTA + + + AG +A+A V P R +I Sbjct: 47 RSRPSKRTAAWRIASIELCQGLAAELAAGRTAGEALARAVSTVEFPDPVALRPLIAAARD 106 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + ++ + S + V G LS + ++ LR+ + + V A Sbjct: 107 GGDVPAALLAAAPEQGGEAFSRLAACWKVSVTAGAGLSVLVDRVAGSLREAQAHRQDVAA 166 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 +A+A ++ LP + ++ L P G L + G+ Sbjct: 167 QLAGPRATARLLAGLPALGLLMAMGLGMRPLHFLFGSPAGVGCLALGLVLDGCGLWWTHR 226 Query: 182 MI 183 ++ Sbjct: 227 LV 228 >gi|197117442|ref|YP_002137869.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem] gi|197086802|gb|ACH38073.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem] Length = 302 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 62/148 (41%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + +K R + P+ LD++ V AGL + A+ +P+ E R+V Sbjct: 143 LHLKVKARQLEIFHPLPDILDLVTLCVEAGLSIDAALIRTTETPQFRDNPLAIEIRQVTM 202 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G ES+ M ++++ F+T+++ + G +LS AL S LR ++ A Sbjct: 203 EVRAGKPRVESLKDMAVRTRVEDIGSFTTMVAQAERFGTSLSHALRTFSDELRTKRRQMA 262 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + A K +I + + ++ Sbjct: 263 EEAAAKTTIKLIFPLIMFIFPALLVVIL 290 >gi|311896986|dbj|BAJ29394.1| hypothetical protein KSE_35900 [Kitasatospora setae KM-6054] Length = 360 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 63/171 (36%), Gaps = 4/171 (2%) Query: 18 NALDIIVRSVRAGLPVSDA----VAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + +R G A +A + + +E + G L ++ + Sbjct: 145 DLCTGLAAELRGGATPEQAMHTVLARAAPEWGRRLGAEPAARLAAGRYGADLPAALRLVA 204 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + V ++ G L++ L ++ LR + + ++ + + ++ Sbjct: 205 ELPGGEGAAAMAACWRVSTESGSGLADGLEQVAEALRAERALSEEIAGELAGPRTTVAVL 264 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 LP L ++VL++ P G + L V A ++GI+ ++ Sbjct: 265 AVLPAVGLGLGAALGAHPVHVLLHTPAGLLGLLVGAVLEVVGIVWTARIVR 315 >gi|301166566|emb|CBW26142.1| general secretion pathway protein F [Bacteriovorax marinus SJ] Length = 404 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 17/166 (10%), Positives = 51/166 (30%), Gaps = 6/166 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72 + + ++A + + +A +V Q+ + + + + G SL+ ++S Sbjct: 66 QELSLMTRQLATLIKAKIQIVEAFNALVDQTDNQKFKSILAEIKQKINEGSSLANALSDY 125 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G L L L+ + +K K++ A++ Sbjct: 126 PK-----VFDNVYVNMVDAGETSGTLQVVLLRLADFTEAQVKLKNKIKGAMTYPMIMAFV 180 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + V + + + + + + L Sbjct: 181 GAGMMGIIFIFVIPKITRIFDTMKKELPLQTEICIWISAFLKSYWW 226 >gi|307824334|ref|ZP_07654560.1| Type II secretion system F domain protein [Methylobacter tundripaludum SV96] gi|307734714|gb|EFO05565.1| Type II secretion system F domain protein [Methylobacter tundripaludum SV96] Length = 406 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 17/154 (11%), Positives = 45/154 (29%), Gaps = 6/154 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMV 73 D + ++AG+P+ + ++ + + G +L+E++++ Sbjct: 67 DIAIFARQLATMLKAGVPLVQSFDIVGKGHDNASMEILLLGIKADIEAGDTLAEALNKRP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G L L ++ ++MK K++ A + Sbjct: 127 L-----YFDELFCNLVAAGEQAGVLETLLDKIATYKEKTESMKKKIKKALTYPIAVIVVA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 + + V D + V Sbjct: 182 FVVTTILLIFVVPVFADMFKSFGADLPAFTKMVV 215 Score = 43.6 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 12/130 (9%), Positives = 37/130 (28%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ +A+ + G + + +E + + + + P Sbjct: 275 FARTLATMSAAGVPLVEALESVAGACGNIIYTEAVLKMREEVATGQRLQFAMQQAGLWPH 334 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G++ L ++ + + + ME + + Sbjct: 335 -----MVVQMVAIGEESGSMDSMLLKVADFFDEEVDNLVDNLSSLMEPIIMVILGTLVGG 389 Query: 139 CVSTLVYFTS 148 V + Sbjct: 390 LVVAMYLPIF 399 >gi|254786983|ref|YP_003074412.1| pilin biogenesis protein [Teredinibacter turnerae T7901] gi|237686170|gb|ACR13434.1| pilin biogenesis protein [Teredinibacter turnerae T7901] Length = 404 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 17/166 (10%), Positives = 51/166 (30%), Gaps = 6/166 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 D + ++AG+P+ + ++ G + + + + E G + S+ + Sbjct: 66 DIALFTRQMATMMKAGVPLVQSFDIVAGGADNKTLAELILDIKEDVAAGGGFAASLRKRP 125 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G L L ++ + +KAK++ A + Sbjct: 126 K-----YFDDLFCNLVESGEQSGALETMLDRIATYKEKTEQLKAKIKKAMTYPIAVVVVA 180 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + V + + L + + + ++ Sbjct: 181 VVVTGVLLVKVVPQFAETFSSFGANLPAFTLFVLHLSNLAQDYWLV 226 Score = 38.9 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 17/131 (12%), Positives = 44/131 (33%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P+ DA++ + G + + + R+ E G L+ +I+ Sbjct: 274 FARTLSTTFAAGVPLIDALSSVAGATGNSIYESAVLRIREEVSTGTQLNVAINS------ 327 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++ + G L E L ++ + + +E A + + Sbjct: 328 TKVFPPMLVQMTTIGEESGALDEMLDKVASYYEEAVDNLVDSLTSLLEPMIMAVLGVLVG 387 Query: 138 FCVSTLVYFTS 148 + + Sbjct: 388 GLMVAMYLPIF 398 >gi|311695301|gb|ADP98174.1| type IV pilus biogenesis protein PilC [marine bacterium HP15] Length = 406 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 18/166 (10%), Positives = 51/166 (30%), Gaps = 6/166 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 D + ++AG+P+ + ++ + ++ + G S + ++ + Sbjct: 67 DIAMLTRQLATMMKAGVPLVQSFDIVADGLENKGLQELILAIRNDIASGTSFAGALRKHP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R+ + + + G L + L ++ L + +K KV+ A + Sbjct: 127 RH-----FNDLYCSLVDSGEKAGALEQMLDRIATYLEKSELLKKKVKKAMTYPAAVVVVA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + V D + V + + + Sbjct: 182 IIVTAILLVKVVPQFEALFTGFGADLPVFTQMVVNLSEWMQKWWFI 227 Score = 37.4 bits (85), Expect = 0.99, Method: Composition-based stats. Identities = 16/128 (12%), Positives = 46/128 (35%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 ++ + AG+P+ DA+ + + + V + I+ + + ++ R P+ Sbjct: 277 RVLSTTFAAGVPLVDALESVANATGNAVYRDGINKIKDEVASGTQLQAAMRNADIFPV-- 334 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + ++ + GNL E L+ ++ + + ME + + + + Sbjct: 335 ---MAVQLTAIGEESGNLDEMLSKVADHYEAVVDDLVDNLSSLMEPLIMSVLGVLVGGLI 391 Query: 141 STLVYFTS 148 + Sbjct: 392 IAMYLPIF 399 >gi|109899648|ref|YP_662903.1| type II secretion system protein [Pseudoalteromonas atlantica T6c] gi|109701929|gb|ABG41849.1| type II secretion system protein [Pseudoalteromonas atlantica T6c] Length = 401 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 17/166 (10%), Positives = 49/166 (29%), Gaps = 8/166 (4%) Query: 21 DIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 I + AG+ + + +I G ++ +R + G S ++ + Sbjct: 69 RQIATMLSAGVTLIQTIDMIAGGHNNPNMRKMLGEIGGEVKAGNPFSSALRKHPEQFDDL 128 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + G L ++ + +K+K++ A + + Sbjct: 129 YCD-----LVSTGEQSGALETIYDRIATYKEKAEALKSKIKKAMFYPVAVIVVAFIVTTI 183 Query: 140 VSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183 + V + + +L ++ G+ V ++ Sbjct: 184 LLIFVVPQFEEIFSSFGAELPAFTQFVLAISRFLQDYGLFVGAGLV 229 Score = 34.7 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 14/131 (10%), Positives = 38/131 (29%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P+ A+ G + R V + G ++ ++ Sbjct: 271 FSRTLATTFAAGVPLIGALDSAAGASGNAVFRDAILFVKKEVAGGTQMNTAMRATA---- 326 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 T + + G + + L+ ++ I + +E A + + Sbjct: 327 --VFPDMVTQMVAIGEEAGAVDDMLSKIATIYEAEVDDMVDGLTSLLEPMIMAVLGVVIG 384 Query: 138 FCVSTLVYFTS 148 + + Sbjct: 385 GLIVAMYLPIF 395 >gi|71278502|ref|YP_271220.1| MSHA biogenesis protein MshG [Colwellia psychrerythraea 34H] gi|71144242|gb|AAZ24715.1| MSHA biogenesis protein MshG [Colwellia psychrerythraea 34H] Length = 408 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 64/180 (35%), Gaps = 14/180 (7%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 ++ + +R+G+P+ A+ +V ++ ++ + + G + S +++ Sbjct: 68 EELIVFCRQMYALMRSGVPILRAINGMVESANSISLKKALTDIGKQLEGGYTFSSALNGH 127 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G L +A L+ L + + +++A Sbjct: 128 PKIFDH-----LFVSLVHVGENTGQLDQAFLKLTTYLERELDTRKRIKAALRYPSMVLIA 182 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF--------MLIGIMVMRLMIN 184 I + ++ V T L + +A++ ML+GI V+ +MI Sbjct: 183 IAAAMVILNIFVIPTFANMFTRLGAELPFATRFIIASSNLFINYWHYMLLGIFVVLIMIR 242 >gi|83720640|ref|YP_442975.1| type II secretion system protein F [Burkholderia thailandensis E264] gi|83654465|gb|ABC38528.1| Bacterial type II secretion system protein F domain [Burkholderia thailandensis E264] Length = 290 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 62/146 (42%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + +R P+ALD++V AG ++ A+ + + P+ EF + Sbjct: 130 LGFAVARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELGTICPPLADEFSVCAD 189 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + +++ M + L + T + Q G ++++L LSR R + + Sbjct: 190 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 249 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K + ++ + V+ + Sbjct: 250 EEKAAKLAPKMTLPMMLFVMPTVALI 275 >gi|262377012|ref|ZP_06070238.1| general secretion pathway protein F [Acinetobacter lwoffii SH145] gi|262308050|gb|EEY89187.1| general secretion pathway protein F [Acinetobacter lwoffii SH145] Length = 409 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 19/184 (10%), Positives = 57/184 (30%), Gaps = 8/184 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQ 59 ++ L+KK+ + D + ++AG+P+ ++ +P E + Sbjct: 59 LEGLMKKKVSTL--DITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEV 116 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + + ++ + + + + G L L ++ + +K K+ Sbjct: 117 EGGNTFAGALRKYPQ-----YFDNLFCSLVESGEQSGALETMLDRVAIYKEKSELLKQKI 171 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + A + + + V + D + V + + + Sbjct: 172 KKAMKYPAAVVVVALIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFL 231 Query: 180 RLMI 183 ++ Sbjct: 232 LIIA 235 >gi|237807312|ref|YP_002891752.1| type II secretion system protein [Tolumonas auensis DSM 9187] gi|237499573|gb|ACQ92166.1| type II secretion system protein [Tolumonas auensis DSM 9187] Length = 418 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 15/164 (9%), Positives = 44/164 (26%), Gaps = 6/164 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMV 73 D I + AG+P+ + ++ E + G S+++ + Sbjct: 79 DIAVLTRQIATMLTAGVPLVQTLRLLASSHEKRPMREMLSTICADIETGTPPSKALRQFP 138 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G L ++ + +K+K++ ++ Sbjct: 139 R-----YFDDLYCDLVASGEQSGALDAIFDRIAIYREKAEALKSKIKKAMFYPATVIFVA 193 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + V + + + + +L Sbjct: 194 LVVSAILLIFVIPEFDKIFKSFGAELPAFTRMVITLSNILQSYW 237 >gi|254244661|ref|ZP_04937983.1| pilin biogenesis protein [Pseudomonas aeruginosa 2192] gi|126198039|gb|EAZ62102.1| pilin biogenesis protein [Pseudomonas aeruginosa 2192] Length = 405 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 20/170 (11%), Positives = 53/170 (31%), Gaps = 6/170 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + + AG+P+ + +I +R + + G SL+ S+ + Sbjct: 67 DIALFTRQMSTMMAAGVPLLQSFDIISEGFDNPNMRKLVEEIKQEVAGGNSLANSLRKKP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G L L ++ + +KAK++ A + Sbjct: 127 Q-----YFDSLYCNLVDAGEQSGALETLLDRVATYKEKTEALKAKIKKAMTYPIAVIVVA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + V + + + + +L ++ L++ Sbjct: 182 IIVSAILLIKVVPQFQSVFEGFGAELPAFTQMVINISNVLQEWWLLVLLM 231 Score = 37.0 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 43/129 (33%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG+P+ +A+ + G + + V ++ + G+ L+ S+ Sbjct: 277 RTLSTTFAAGVPLVEALDSVSGATGNVVFRDAVGKIKQDVSTGMQLNFSMRT------TN 330 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + ++ + G L + LA ++ + ME A + + Sbjct: 331 IFPSMAIQMTAIGEESGALDDMLAKVAGFYEQEVDNAVDNLTALMEPMIMAVLGVLVGGL 390 Query: 140 VSTLVYFTS 148 + + Sbjct: 391 IIAMYLPIF 399 >gi|148253057|ref|YP_001237642.1| hypothetical protein BBta_1517 [Bradyrhizobium sp. BTAi1] gi|146405230|gb|ABQ33736.1| putative membrane protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 320 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 68/147 (46%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 + H+++++T P+AL+++V V AGL + + + + ++ + E Sbjct: 157 IDHVVRQQTKAVASGLPDALELLVVCVEAGLSLEEGLHRVAHELREAQPALADELVLTWA 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ S +++++ + V +++S QLG L+++L + +R+ + M Sbjct: 217 EINVLPSRAQALTNFAARNDIPSVRSVVSMLSQSLQLGTPLAQSLRVGAVEMRNDQMMLL 276 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + +A + A + ++ + V LV Sbjct: 277 EERASRLPAMLTIPVMLFIMPTVFLLV 303 >gi|303239931|ref|ZP_07326454.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] gi|302592641|gb|EFL62366.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] Length = 404 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 6/167 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 D AG+ + ++ ++ Q+ + + + +V E G+SLSE+ Sbjct: 63 KDLSVFCKQFYTMADAGVTIIGSLDLLRRQTENRKLANILSKVYEDVQKGMSLSEA---- 118 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + E + ++ GNL L L+ L +K K++ + KA I Sbjct: 119 -MKVHKSEFPTIVISMIEIGEISGNLDTVLDRLATYLEKDNKVKQKIKTSMVYPKAIGGI 177 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + V + ++ + +A + I + Sbjct: 178 AIVAVIFMMIFVVPNFITMFKGMGSELPLPTRILLAISDTFKNIWFL 224 Score = 37.8 bits (86), Expect = 0.68, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 41/134 (30%), Gaps = 7/134 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77 + ++ G+P+ A+ V+ + V +V E G L+E + + Sbjct: 273 FSRSLSLMLKTGVPLIQALEVVGNLLDNEVVNKGMIKVKEDIKRGSGLAEPLEAVG---- 328 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 T + + G+L + ++ D + +E + + Sbjct: 329 --IFPVMVTHMISIGEEAGSLDSIVEKVADFYDDELDASIGKILAMLEPLMIVAMAVVIG 386 Query: 138 FCVSTLVYFTSPGY 151 V ++ Y Sbjct: 387 GIVIAMILPIFSMY 400 >gi|53803861|ref|YP_114525.1| type IV pilin biogenesis protein PilC [Methylococcus capsulatus str. Bath] gi|53757622|gb|AAU91913.1| type IV pilin biogenesis protein PilC [Methylococcus capsulatus str. Bath] Length = 404 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 17/161 (10%), Positives = 48/161 (29%), Gaps = 6/161 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLS 66 R + + AG+P+ A ++ + ++ + G +L+ Sbjct: 59 RQKITPKHIAVFSRQLATMLSAGVPLVQAFDIVGRGHDNPAMQDLLMSIKADVEAGTTLA 118 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++S+ + + + G L L ++ +++K K++ Sbjct: 119 DALSKHPVH-----FDELFCNLVRAGEQAGVLETLLHKVADYKEKTESLKGKIKKALAYP 173 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 A + + + V T D + + Sbjct: 174 IAVVVVAVIVTSILLIFVVPTFEDLFKSFGADLPAFTQMVI 214 Score = 44.3 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 13/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ +A+ + G + + + E + + R P Sbjct: 274 FARTLSTMSAAGVPLVEALQSVAGATGNIIYGEAVMRMREDVSTGQQLQMSMRQANLFPN 333 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L L+ ++ + + + +E + + Sbjct: 334 -----MVMQMVAIGEESGALDSMLSKVADFYEEEVDNAVDSLSSLLEPLIMVVLGVLIGG 388 Query: 139 CVSTLVYFTS 148 V + Sbjct: 389 LVIAMYLPIF 398 >gi|307726638|ref|YP_003909851.1| type II secretion system F domain-containing protein [Burkholderia sp. CCGE1003] gi|307587163|gb|ADN60560.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1003] Length = 293 Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 69/146 (47%), Gaps = 1/146 (0%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + + ++R A+ L LD + +V AGL ++ A+ V + P+R E V+ Sbjct: 136 RDVRRRRVAQILKHLSIYLDFLTLAVEAGLNINGAIQKAVEKGPAGPLRWELEHVLRDLK 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 GL+ +E++ R+ + ++EV+ F + ++G L+++L S R + +A+ + Sbjct: 196 SGLNRTEALRRLDDRLRIKEVTNFVGAVVQAERMGAGLAKSLRFQSEQRRSERFQRAEKK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146 A+ K ++ + ++ F Sbjct: 256 AMEAPVKLVFPLLVFIFPITFIVLGF 281 >gi|125973620|ref|YP_001037530.1| type II secretion system protein [Clostridium thermocellum ATCC 27405] gi|281417825|ref|ZP_06248845.1| Type II secretion system F domain protein [Clostridium thermocellum JW20] gi|125713845|gb|ABN52337.1| type II secretion system protein [Clostridium thermocellum ATCC 27405] gi|281409227|gb|EFB39485.1| Type II secretion system F domain protein [Clostridium thermocellum JW20] Length = 404 Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 22/170 (12%), Positives = 57/170 (33%), Gaps = 12/170 (7%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRM 72 D + AG+P+++A+ V+ Q+++ E V + G++LS ++ + Sbjct: 64 KDLAVFCRQFSIVLEAGVPIANALDVLREQTTNRTLRECLDDVYDNIQKGIALSNAMRQH 123 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R P + ++ G L ++ + K++ + Sbjct: 124 PRIFP-----EMLINMVEAGEISGQLDLVFKRMAIQFEKENKLNQKIRGALTYPI---IV 175 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGIMVM 179 + L+ P ++ VL + + + +A + + Sbjct: 176 TVVAIAVIMILMVAVVPTFVKVLADFDVEMPIYTRILIAVSGFFKSFWFI 225 >gi|332305385|ref|YP_004433236.1| Type II secretion system F domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172714|gb|AEE21968.1| Type II secretion system F domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 401 Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 16/166 (9%), Positives = 48/166 (28%), Gaps = 8/166 (4%) Query: 21 DIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 I + AG+ + + +I ++ +R + G S ++ + Sbjct: 69 RQIATMLSAGVTLIQTIDMIATGHNNPNMRKMLGEIGGEVKAGNPFSTALRKHPDQFDDL 128 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + G L ++ + +K+K++ A + + Sbjct: 129 YCD-----LVSTGEQSGALETIYDRIATYKEKAEALKSKIKKAMFYPVAVIVVAFIVTTI 183 Query: 140 VSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183 + V + + +L ++ G+ V ++ Sbjct: 184 LLIFVVPQFEEIFSSFGAELPAFTQFVLAISRFLQDYGLFVAAGLV 229 Score = 34.7 bits (78), Expect = 5.3, Method: Composition-based stats. Identities = 14/131 (10%), Positives = 38/131 (29%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P+ A+ G + R V + G ++ ++ Sbjct: 271 FSRTLATTFAAGVPLIGALDSAAGASGNAVFRDAILFVKKEVAGGTQMNTAMRATA---- 326 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 T + + G + + L+ ++ I + +E A + + Sbjct: 327 --VFPDMVTQMVAIGEEAGAVDDMLSKIATIYEAEVDDMVDGLTSLLEPMIMAVLGVVIG 384 Query: 138 FCVSTLVYFTS 148 + + Sbjct: 385 GLIVAMYLPIF 395 >gi|104781449|ref|YP_607947.1| type II secretion pathway protein F (XcpS-2) [Pseudomonas entomophila L48] gi|95110436|emb|CAK15144.1| putative type II secretion pathway protein F (XcpS-2) [Pseudomonas entomophila L48] Length = 401 Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 24/179 (13%), Positives = 57/179 (31%), Gaps = 17/179 (9%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D A + + AGLP+ A+ + Q+ + V G+ L+++++ Sbjct: 63 DLAWATRQLASLLAAGLPLEAALGATLEQAERKHIAQVLGAVRADVRSGMRLADALAERP 122 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + + G+L+ + L+ + +R ++ K+ + + Sbjct: 123 R-----DFPDIYRALVAAGEESGDLARVMERLADYIEERNTLRGKIMTAFIYPGVVGLVS 177 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-----------IGIMVMRL 181 + + + V D G L +AA+ + G Sbjct: 178 VGIVIFLLSYVVPQVVSAFTQARQDLPGLTLAMLAASDFVRAWGALCFALLAGAFWGWR 236 Score = 35.9 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 13/130 (10%), Positives = 35/130 (26%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ + + G+ L+ +++ Sbjct: 270 FASTLAILGSAGVPLLRALEAARQTLGNDCLDQCVSEATARVREGVGLATALAV------ 323 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G+L L + L +A +E + + Sbjct: 324 GKVFPPLLIHLIASGEKTGDLPPMLDRAADSLAKDIERRAMGMTALLEPLMIVVMGAVVL 383 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 384 LIVMAVLMPI 393 >gi|94984864|ref|YP_604228.1| type II secretion system protein [Deinococcus geothermalis DSM 11300] gi|94555145|gb|ABF45059.1| type II secretion system protein [Deinococcus geothermalis DSM 11300] Length = 406 Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 20/185 (10%), Positives = 52/185 (28%), Gaps = 23/185 (12%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72 + + AG+P+ A+A++ Q + + + G LSE++ + Sbjct: 66 KQVAIFSKQLATLINAGVPLVQALAILQRQIENKTFQNIIKSIRTDVESGTPLSEALVKH 125 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G L L ++ ++ K+++ Sbjct: 126 PK-----VFNRLYINLVRAGETSGTLDSILERIAAFQEKELGLRGKLKSALTYPVVVLVF 180 Query: 133 IGSLPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGI 176 + + + T + G + L G ++L A + Sbjct: 181 AIGITYFLLTTIVPQFAGILAQLNAPLPLITRALMAVSDFLQHSGLLILVFVAVL-VFAY 239 Query: 177 MVMRL 181 Sbjct: 240 RWFYK 244 >gi|282897952|ref|ZP_06305947.1| type II secretion system protein [Raphidiopsis brookii D9] gi|281197096|gb|EFA71997.1| type II secretion system protein [Raphidiopsis brookii D9] Length = 419 Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 19/168 (11%), Positives = 60/168 (35%), Gaps = 8/168 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 V +G+ + ++ +I Q ++ ++ G++LS+S+ + Sbjct: 84 FSRQFATLVNSGVTIIKSLDIISPQCPNPKLKKALNQISTDIKTGINLSDSMKKHPDC-- 141 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++GG L + L L+++L D ++ ++++ ++ Sbjct: 142 ---FDALYITMVQAGEVGGVLDDVLHRLAKLLEDLAKLQNQIKSALSYPIFVGCFAIAIA 198 Query: 138 FCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMI 183 ++ + + + +L+ + G +V+ +I Sbjct: 199 LGMTIFIIPIFANVFKNMGVELPIITKILISFSQTLNSWGFLVIITLI 246 >gi|77748708|ref|NP_643550.2| fimbrial assembly protein [Xanthomonas axonopodis pv. citri str. 306] Length = 400 Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 20/168 (11%), Positives = 54/168 (32%), Gaps = 6/168 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + +++G+P+ A+ +I GQ + +R+ ++ G SL E++S+ Sbjct: 60 KDISFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRTMVGQIRTDIEGGASLYEAVSKH 119 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L ++ + + +K K++ + Sbjct: 120 PVQ-----FDELYRNLVKAGEGAGVLETVLDTVATYKENLEALKGKIKKALFYPAMVMAV 174 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + V + + V + ++ + Sbjct: 175 AMLVSAILLVWVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWLM 222 Score = 35.5 bits (80), Expect = 3.1, Method: Composition-based stats. Identities = 16/131 (12%), Positives = 46/131 (35%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77 + +AG+P+ +A+ ++ G + + V R+ E +G ++ ++ ++ + Sbjct: 269 FARTTAVTFKAGVPLVEALGIVAGATGNSVYEKAVLRMREDVSVGYPVNVAMKQVNLFPH 328 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++ + G L L ++ N + +E +I + Sbjct: 329 M------VVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG 382 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 383 GMVIGMYLPIF 393 >gi|91200636|emb|CAJ73686.1| similar to general secretory system type II protein, membrane component [Candidatus Kuenenia stuttgartiensis] Length = 417 Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 23/184 (12%), Positives = 56/184 (30%), Gaps = 17/184 (9%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 + AGLP+ ++ ++ Q ++ +VIE G + S +++R Sbjct: 76 SKHLTLFTRQLSTLQDAGLPIIRSLQILAAQLKKGMLKKTVLKVIENIEGGSTFSGALAR 135 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 R I ++ G+L L L+ + + K+ + Sbjct: 136 HPR-----VFDKLYVNIVKAGEISGSLDIILRRLADFREKMERLIRKIITAMIYPSVVVV 190 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-----------IGIMVMR 180 + ++ + V + L D + + + L +G + Sbjct: 191 VAAAILIGLMIFVVPNFAKIFDELGLDLPAPTRMLIQFSTALKTNWMYLPAVPVGTFIFY 250 Query: 181 LMIN 184 ++ Sbjct: 251 KLVR 254 >gi|21109581|gb|AAM38086.1| fimbrial assembly protein [Xanthomonas axonopodis pv. citri str. 306] Length = 418 Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 20/168 (11%), Positives = 54/168 (32%), Gaps = 6/168 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + +++G+P+ A+ +I GQ + +R+ ++ G SL E++S+ Sbjct: 78 KDISFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRTMVGQIRTDIEGGASLYEAVSKH 137 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L ++ + + +K K++ + Sbjct: 138 PVQ-----FDELYRNLVKAGEGAGVLETVLDTVATYKENLEALKGKIKKALFYPAMVMAV 192 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + V + + V + ++ + Sbjct: 193 AMLVSAILLVWVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWLM 240 Score = 35.5 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 16/131 (12%), Positives = 46/131 (35%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77 + +AG+P+ +A+ ++ G + + V R+ E +G ++ ++ ++ + Sbjct: 287 FARTTAVTFKAGVPLVEALGIVAGATGNSVYEKAVLRMREDVSVGYPVNVAMKQVNLFPH 346 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++ + G L L ++ N + +E +I + Sbjct: 347 M------VVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG 400 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 401 GMVIGMYLPIF 411 >gi|330890301|gb|EGH22962.1| general secretion pathway protein GspF [Pseudomonas syringae pv. mori str. 301020] Length = 403 Score = 65.1 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 20/164 (12%), Positives = 54/164 (32%), Gaps = 4/164 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + + + AGLP+ +A+ V Q+ + + + + Sbjct: 63 DADLASVTRQLASLLSAGLPLDEALGATVEQAE-RQHIIQTLSAIRTDVRSGMRLAEALA 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R + + + G+L+ + L+ + +R ++ K+ + + Sbjct: 122 ARPRDFPD---IYRALIGAGEESGDLARVMERLADYIEERNGLRGKILTAFIYPGVVGLV 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 ++ + + V + D G L +AA+ ++ Sbjct: 179 SIAIVIFLLSYVVPQIVSAFSQARQDLPGLTLAMLAASDFILAW 222 Score = 34.3 bits (77), Expect = 7.9, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ S+ + G++L+ ++ Sbjct: 272 FASTLAILGAAGVPLLRALDAARQTLSNDRLSLAVSEATSRVREGVNLAVALRI------ 325 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G+L L ++ L +A +E + G + Sbjct: 326 EKVFPPLLIHLIASGEKTGSLPPMLDRAAQTLSRDIERRALSMTALLEPLMIVIMGGVVL 385 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 386 VIVMAVMLPI 395 >gi|15602712|ref|NP_245784.1| hypothetical protein PM0847 [Pasteurella multocida subsp. multocida str. Pm70] gi|12721156|gb|AAK02931.1| TadC [Pasteurella multocida subsp. multocida str. Pm70] Length = 284 Score = 65.1 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 68/156 (43%), Gaps = 4/156 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--TQ 59 ++K + K + D P +D++ +V+ G+ + A+ + ++ + Sbjct: 127 NAILKAKVKKIMVDLPGFIDLVAVNVQTGISIDAALKQVAIDFKKLNPDLTYVMLRIIRK 186 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 LS+++ + +P E+ F TV+ G ++ L LS +R+ + + + Sbjct: 187 SELTGLSQALQDLSISLPTTEIRMFCTVLQQSLNFGSSIYSHLIQLSADIREIQLLIIEE 246 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + ++ AK S +I + F + L+ +PG M V Sbjct: 247 KLGTLSAKMSIPLILFIMFPIIILI--LAPGIMRVF 280 >gi|256393177|ref|YP_003114741.1| type II secretion system protein [Catenulispora acidiphila DSM 44928] gi|256359403|gb|ACU72900.1| type II secretion system protein [Catenulispora acidiphila DSM 44928] Length = 296 Score = 65.1 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 63/171 (36%), Gaps = 2/171 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + + ++ A + ++ + P+R+E + G L E++ Sbjct: 104 EAIATFTEALRDTLGAAAGLEQSILAAAANAPAPIRAEVAELAANLKAGTRLDEALRTFA 163 Query: 74 RYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + Q NL E L L+R R++ ++ A ++S I Sbjct: 164 ADLGDATGDLVVAALVLASRQQARNLGEVLGELARYAREQAAQSMRITADRARTRSSVRI 223 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 I + F V+ ++ YM + P G ++L V A + M + + Sbjct: 224 IVAFVFAVAGVLVGMDGSYMTP-YSSPAGQIVLAVVAGVFGVAFMWLHKIA 273 >gi|222834143|gb|EEE72620.1| predicted protein [Populus trichocarpa] Length = 194 Score = 65.1 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 59/106 (55%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L KR + P+A+D+I R++RAG + A+ ++ + P+ EFR E + G Sbjct: 72 RLRTKRLKQMEVQLPDAVDMISRALRAGHSFAGALGMVGQEIKAPLGPEFRTTFEEINYG 131 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRI 108 ++L E+++ + +P+ ++ +F + +Q + GGNL+E L + + Sbjct: 132 VALDEAMTNLAMRVPVGDLRYFVIAVLIQRESGGNLAEILDTIGTM 177 >gi|271962852|ref|YP_003337048.1| hypothetical protein Sros_1307 [Streptosporangium roseum DSM 43021] gi|270506027|gb|ACZ84305.1| hypothetical protein Sros_1307 [Streptosporangium roseum DSM 43021] Length = 295 Score = 65.1 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 68/174 (39%), Gaps = 2/174 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + + ++ + A+ + ++ +R R +++ H + L +++ Sbjct: 106 EGLAAWTESLRDTIAGAAGLEQAIPSSIRAAAPMLRPHLRALVDRLHTRMPLPDALRLFA 165 Query: 74 RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + S+ G L + L L+ R+ +M+ +V+A + S I Sbjct: 166 DELDDPSADLVVAALILNSKLRGPGLRDVLGALAVSAREELDMRRRVEAERRSTRRSVQI 225 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + + + +P Y+ ++ G +L V A F G MR + +FD Sbjct: 226 VVGTAVAFAVALVVFNPSYVEE-YDNTLGQAVLVVVAGFFGAGFAWMRRLAHFD 278 >gi|319795559|ref|YP_004157199.1| type II secretion system f domain [Variovorax paradoxus EPS] gi|315598022|gb|ADU39088.1| Type II secretion system F domain [Variovorax paradoxus EPS] Length = 295 Score = 65.1 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 66/147 (44%), Gaps = 1/147 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 M+ KKR L P LD+I +AGL ++ A+A V + + EF R++ Sbjct: 138 MRDRRKKREKNILRTLPGYLDMITLCCQAGLSLTGAIAQAVQKGPGGALGIEFDRMMREM 197 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G+S ++++ M + + + + ++ LG +L++ L+ +S R + A+ Sbjct: 198 RTGVSRMDALNAMAERLDNKHIKSLVSNLTQAESLGASLADTLSAISDQRRTERFQHAEK 257 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146 A+ K ++ + +++F Sbjct: 258 LAMEAPVKMIGPLVIFIFPVTFIIIFF 284 >gi|301058142|ref|ZP_07199194.1| general secretion pathway protein F [delta proteobacterium NaphS2] gi|300447774|gb|EFK11487.1| general secretion pathway protein F [delta proteobacterium NaphS2] Length = 409 Score = 65.1 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 62/166 (37%), Gaps = 6/166 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AGLPV A+++++ + + + +++T G LS+++++ R Sbjct: 75 FTQDLATLLEAGLPVDRALSLLIESAENDRFKKVIGDILKTVQGGGYLSDALAKHPRA-- 132 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 S F + + GG L L+ L L + +K +++ + + G Sbjct: 133 ---FSSFYVSMVRAGEAGGVLEAVLSRLGEFLESAQELKDYIKSAMVYPIFLVCVGGLSI 189 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + T V + + + + +L + +++ Sbjct: 190 IVLLTFVIPKFSIIFSDMGQTIPLSTRFLLGVSHLLQSYWWVIIIV 235 Score = 37.8 bits (86), Expect = 0.77, Method: Composition-based stats. Identities = 14/141 (9%), Positives = 38/141 (26%), Gaps = 5/141 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + + ++G+P+ A+ ++ + V S + T+ R Sbjct: 274 EVARFARTLGTLTKSGVPILQALMLVKDIIGNKVVSGVMETVYTRVKEGDRLSKPLR--- 330 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + G L L ++ K +E ++ Sbjct: 331 --DTGIFPPLAIQMITVGEETGRLDRMLLRVAESYEKMVRNMVKRLISLLEPTMILFMGL 388 Query: 135 SLPFCVSTLVYFTSPGYMNVL 155 + F V +++ Sbjct: 389 VVGFVVVSMLMAVFSMNEMPF 409 >gi|294139027|ref|YP_003555005.1| type IV pilus biogenesis protein PilC [Shewanella violacea DSS12] gi|293325496|dbj|BAJ00227.1| type IV pilus biogenesis protein PilC [Shewanella violacea DSS12] Length = 423 Score = 65.1 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 19/172 (11%), Positives = 50/172 (29%), Gaps = 6/172 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMV 73 D I + AG+P+ + ++ E ++ G+ LS+++ Sbjct: 85 DIAMITRQIATMLSAGVPLVTTIEMLGRGHEKVKMRELLGTILNDVQAGIPLSDALR--- 141 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 Q + + G+L ++ + +K+K++ A + Sbjct: 142 --PHRQYFDDLYVDLVAAGEHSGSLDAVFDRVATYREKTEALKSKIKKAMFYPAAVVVVA 199 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + V + + L + + L + +I Sbjct: 200 FGVTALLLLFVVPQFEEIFSGFGAELPAFTQLVIGISDALQASWYIFAVIII 251 >gi|168701870|ref|ZP_02734147.1| type IV fimbrial assembly protein PilC [Gemmata obscuriglobus UQM 2246] Length = 414 Score = 65.1 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 23/167 (13%), Positives = 55/167 (32%), Gaps = 6/167 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 AGLPV ++ ++ Q +++ V++ G +LSE++SR Sbjct: 73 QKQLVTFTRQFSTLQDAGLPVLRSLRILERQMPPSALKNSMIDVVDDVESGSALSEALSR 132 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + S + + GG L L L+ L +++K+K+ + + Sbjct: 133 HPKA-----FSKLYVNMVRAGEAGGALEIILQRLADFLEKAQSLKSKIIGAMVYPAVVIF 187 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + ++ + + + L + + + Sbjct: 188 VAVAILTFIMVAIIPKFKKIFDEFGMTLPWATLTLIRVSNWMSEYWW 234 Score = 35.9 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 15/128 (11%), Positives = 43/128 (33%), Gaps = 5/128 (3%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + + +G+P+ +A++++ +++ V + I R R Sbjct: 283 MRTLGTLISSGVPILEAISIVKETANNAVFERMFQRIFESIREGDTIADPLRESRL---- 338 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 V + + G+L L ++ + + K +E ++ ++ Sbjct: 339 -VDAMVVNMVEVGEETGDLDTMLYKIADFYDEWVDNLVKSLISLLEPIMIVFLGFTIGAI 397 Query: 140 VSTLVYFT 147 V +L Sbjct: 398 VISLFLPL 405 >gi|301058210|ref|ZP_07199260.1| putative type IV fimbrial assembly protein PilC [delta proteobacterium NaphS2] gi|300447712|gb|EFK11427.1| putative type IV fimbrial assembly protein PilC [delta proteobacterium NaphS2] Length = 402 Score = 65.1 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 24/175 (13%), Positives = 55/175 (31%), Gaps = 13/175 (7%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 D + AGLP+ + ++ Q + + ++V+ G SL+ES+ + Sbjct: 62 SKDLVIFTRQFSTMIDAGLPLVQGLTILTEQMENKTFKKILKQVVTDVEGGASLAESLQK 121 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + ++GG L L LS + + +K++++ Sbjct: 122 HPK-----VFDSLFVNLVAAGEVGGILDTILQRLSTHIEKAQKLKSRIKGAMTYPAIVVA 176 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-------AFMLIGIMVM 179 I + + V + + V +IG ++ Sbjct: 177 IAILVVSVIMIFVIPVFESLFRDFGSALPLPTQIVVNISRFTKNNIHYMIGGFII 231 Score = 38.9 bits (89), Expect = 0.29, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+P+ A+ ++ S + V E + S++E Sbjct: 271 FTRTLGTMIASGVPIISAMEIVAKTSGNVVLEEVI-----MDVRSSIAEGQPITEPLSEN 325 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G L L ++ D + +E ++ G++ Sbjct: 326 EIFPNMVVQMIGVGEATGALETMLEKIADFYDDEVDAAVDALTSMLEPLLMVFLGGTIGG 385 Query: 139 CVSTLVYFTS 148 V + Sbjct: 386 LVVAMYLPIF 395 >gi|262164953|ref|ZP_06032691.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio mimicus VM223] gi|262027333|gb|EEY46000.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio mimicus VM223] Length = 291 Score = 65.1 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 59/154 (38%), Gaps = 4/154 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--TQHL 61 KK T K P LD++ V G+ + + + + V + + Sbjct: 137 RGKKITKKISSRLPFLLDLMNVCVHTGMTIEACLEYLAFELRTVDHHLAYVVKKTVERSK 196 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + L ++++ +P E F ++ + G ++ LA L+ +R+ M + + Sbjct: 197 LVGLEKALNEFYDLVPTAEAQSFVMTMTQSLKYGSSIGPVLATLASDIREMNMMDLEEKI 256 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 M AK S +I + + L+ PG M + Sbjct: 257 GKMGAKMSIPLIAFIMVPIIILIAA--PGIMRMF 288 >gi|256003440|ref|ZP_05428431.1| type II secretion system protein [Clostridium thermocellum DSM 2360] gi|255992730|gb|EEU02821.1| type II secretion system protein [Clostridium thermocellum DSM 2360] gi|316940138|gb|ADU74172.1| Type II secretion system F domain [Clostridium thermocellum DSM 1313] Length = 404 Score = 65.1 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 22/170 (12%), Positives = 57/170 (33%), Gaps = 12/170 (7%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRM 72 D + AG+P+++A+ V+ Q+++ E V + G++LS ++ + Sbjct: 64 KDLAVFCRQFSIVLEAGVPIANALDVLREQTTNRTLRECLDDVYDNIQKGIALSNAMRQH 123 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R P + ++ G L ++ + K++ + Sbjct: 124 PRIFP-----EMLINMVEAGEISGQLDLVFKRMAIQFEKENKLNQKIRGALTYPI---IV 175 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGIMVM 179 + L+ P ++ VL + + + +A + + Sbjct: 176 TVVAIAVIMILMVAVVPTFVKVLADFDVEMPIYTRILIAVSGFFKSFWFI 225 >gi|294630591|ref|ZP_06709151.1| integral membrane protein [Streptomyces sp. e14] gi|292833924|gb|EFF92273.1| integral membrane protein [Streptomyces sp. e14] Length = 283 Score = 65.1 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 58/162 (35%), Gaps = 1/162 (0%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + VRAG +A+ S + V+ G + +++ R + + Sbjct: 118 LAGEVRAGRQPGEALLCAARD-SGGFGAAEAAVLAAARFGGDVPGALAAAARRPGAEGLR 176 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + V G L+ L L LR ++ + ++A A+A+A ++ LP Sbjct: 177 GLAACWRVTVDQGAGLAAGLDRLEAALRADRDQRCDLRAQLAGARATAVMLAGLPVLGLL 236 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L ++VL++ G L V G+ ++ Sbjct: 237 LGTAMGADPLHVLLHTGAGLGCLVVGGVLEGAGLWWASGIVR 278 >gi|225375137|ref|ZP_03752358.1| hypothetical protein ROSEINA2194_00761 [Roseburia inulinivorans DSM 16841] gi|225213011|gb|EEG95365.1| hypothetical protein ROSEINA2194_00761 [Roseburia inulinivorans DSM 16841] Length = 415 Score = 65.1 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 20/154 (12%), Positives = 45/154 (29%), Gaps = 11/154 (7%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----------PVRSEFRRV 55 K+R K ++P + + + AG+ + A I S+ P+ E Sbjct: 258 KRRKEKLQSEYPELVSKLTILLGAGMTLFSAWNKIATSYSNKRKNNTIPIHPLYEEMLIT 317 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKN 114 G+ + + R L F +++ + L + L + + Sbjct: 318 CHEIESGVGEARAYERFGERCGLHRYRKFCSLLVQNLRKGTRGLVQLLEQEVSDAFEERK 377 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 AK K ++ + ++ Sbjct: 378 NLAKKSGEEAGTKMLFPMMMMFGIIIVIIMVPAF 411 >gi|296103140|ref|YP_003613286.1| general secretion pathway protein F [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057599|gb|ADF62337.1| general secretion pathway protein F [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 402 Score = 65.1 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 14/169 (8%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74 + V A LP+ A+ I Q+ D + + + E G +L ++ S+ R Sbjct: 65 LSMFTRQLSTLVNASLPLESALKAISKQTEDKKLAAMVTEIREKVVEGHTLFDAFSQFPR 124 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + G+L + L L+ R+ MK+K+ + + Sbjct: 125 T-----FDKLYCTLVMAGEKTGHLGDVLEKLAEYNEQRQKMKSKLTQAMVYPIT---LTV 176 Query: 135 SLPFCVSTLVYFTSPGYMNVLIND-----PRGHMLLGVAAAFMLIGIMV 178 +S L+ P + ++ L+ V+ GI + Sbjct: 177 VAVAVISILLVAVVPQVIEQFVHMKQQLPITTRTLIAVSDFLQAYGIYI 225 >gi|330815001|ref|YP_004358706.1| General secretion pathway protein F [Burkholderia gladioli BSR3] gi|327367394|gb|AEA58750.1| General secretion pathway protein F [Burkholderia gladioli BSR3] Length = 405 Score = 65.1 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 24/175 (13%), Positives = 56/175 (32%), Gaps = 6/175 (3%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSE 67 + + + AGLP+ +++AV+ Q+ D +R + G SL+ Sbjct: 61 RKLSQREQAILTRQLASLLTAGLPLGESLAVLTEQAERDYIRELMAAIRAEVLGGHSLAS 120 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +++ R + + + G L L+ L+ + R +K K+ Sbjct: 121 ALAEHPR-----DFPEIYRALVSAGEHTGKLGIVLSRLADYIEQRNALKQKIVLAFTYPG 175 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 I + + + V ++ +A + + L+ Sbjct: 176 IVTLIAFGIVTFLLSYVVPQVVNVFASTKQQLPFLTIVMMALSDFVRHWWWAMLI 230 Score = 36.6 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 36/130 (27%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ S+ S I G SLS + Sbjct: 274 FASTLAILTAAGVPILRALQAAGETLSNRAMSGNIDDAIVRVREGTSLSRA------LNH 327 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + + G+++ L + + +E + G + Sbjct: 328 VKTFPPVLVHLIRSGEATGDVTTMLDRAAEGEARELERRTMFMTSLLEPLLILAMGGIVL 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 VIVLAVMLPI 397 >gi|319761504|ref|YP_004125441.1| general secretion pathway protein f [Alicycliphilus denitrificans BC] gi|330823373|ref|YP_004386676.1| general secretion pathway protein F [Alicycliphilus denitrificans K601] gi|317116065|gb|ADU98553.1| general secretion pathway protein F [Alicycliphilus denitrificans BC] gi|329308745|gb|AEB83160.1| general secretion pathway protein F [Alicycliphilus denitrificans K601] Length = 409 Score = 65.1 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 22/164 (13%), Positives = 50/164 (30%), Gaps = 4/164 (2%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + V AGLP+ A+ + ++ D + + + S Sbjct: 71 ALAIWTRQLAGLVGAGLPLERALTALADEADDERQRHLVAALRAEVNAGS----TFARAL 126 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 +E S + + G L + L +L+ L R+ ++AK+ ++ + Sbjct: 127 AQHPREFSDIYCAVIGAGEGSGGLGQVLESLADDLEARQQLRAKLIGAALYPAIVTLVAI 186 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + V +L +A + + G Sbjct: 187 VIVLFLVGYVVPQVASVFAGSKRALPLLTVLMLALSDFVRGYGW 230 Score = 35.5 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 39/130 (30%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ ++ + G L+ ++++ R+ Sbjct: 278 FAGTLAMLAGAGVPILRALQAAAETLNNRALRADALEALVLVREGAPLASALAQKKRFPG 337 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L LA + L +A A +E + + Sbjct: 338 ------LVAMFARLGEQTGQLPTMLARAASQLGTEVQRRAMQLATILEPLLIVTMGLVVM 391 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 392 LIVLAVLQPI 401 >gi|95929090|ref|ZP_01311835.1| type II secretion system protein [Desulfuromonas acetoxidans DSM 684] gi|95134991|gb|EAT16645.1| type II secretion system protein [Desulfuromonas acetoxidans DSM 684] Length = 410 Score = 65.1 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 60/174 (34%), Gaps = 7/174 (4%) Query: 6 KKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGL 63 K+R K DD + R+G+P+ ++ ++ S + ++ R VIE G Sbjct: 62 KRRPKKVRLDDLILFCRQMYSLTRSGVPMMRSLYGLIESSQNPTMQQALRGVIENLESGR 121 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 LS +++ P T + + GNL E+ L L K + +++A Sbjct: 122 DLSGAMAAFPEVFPN-----LMTRMVQVGESSGNLEESFRQLGEYLEFEKLTREQIKAAL 176 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 IG +S V T L D + + + + Sbjct: 177 RYPTFVIIAIGVAMTILSLFVIPTFEKVFAGLGADLPLPTKIIMGISHFSVAYW 230 Score = 38.6 bits (88), Expect = 0.40, Method: Composition-based stats. Identities = 12/136 (8%), Positives = 34/136 (25%), Gaps = 5/136 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 +G+P+ A+ + E + L ++++R Sbjct: 272 MRATLARFARAFAMGYGSGVPLVQALGYTARAIENSYLGEK---LNEMRNQLERGDTLTR 328 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 L+ + + + G++ L ++ K ++E Sbjct: 329 SAAN--LKIFTPLVLQMLAVGEESGSVDSMLLEVAGFYEREVEYDLKNLTSAIEPILIVI 386 Query: 132 IIGSLPFCVSTLVYFT 147 I + + Sbjct: 387 IGAMVLVLALGVFLPM 402 >gi|83590395|ref|YP_430404.1| type II secretion system protein [Moorella thermoacetica ATCC 39073] gi|83573309|gb|ABC19861.1| type II secretion system protein [Moorella thermoacetica ATCC 39073] Length = 402 Score = 65.1 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 55/172 (31%), Gaps = 7/172 (4%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV-IETQHLGLSLS 66 R D + + AGLP+ A+ V+ Q +P E V ++ G + Sbjct: 57 RRPVSRRDLALFCRQLATMLGAGLPIMSALRVLQRQVENPSLRESIGVLLQDLESGEAFY 116 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ R R P +LGG L E L L+ L ++ KV++ Sbjct: 117 RALGRQPRVYPP-----IVIHTVEAGELGGALDETLERLAGHLEREHEVEEKVKSALTYP 171 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + + T V + +N L P + + Sbjct: 172 AVVSLVAVGAVIFLLTYVLPSFQVMLNSL-QVPLPWPTRMILGLSEGLRRWW 222 >gi|325066927|ref|ZP_08125600.1| Type II secretion system F domain [Actinomyces oris K20] Length = 314 Score = 65.1 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 53/146 (36%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KR ++ P+ ++++ +V AG A+ IV + E + Sbjct: 159 LTRAVAKRLSRIEAQLPDVVELLALAVGAGQGPVPAIERIVALGRGDLVDELSSTLTDIR 218 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G LS ++ RM R + V+ I V + G L+E L + + +R+ + Sbjct: 219 SGTVLSTALDRMERRVGSVHVTRLCEAIIVALERGTPLAEVLRSQAADVREAARQDLMEE 278 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146 E ++ + F Sbjct: 279 GGRREIAQMVPVVFLVLPITVVFALF 304 >gi|269128337|ref|YP_003301707.1| type II secretion system protein [Thermomonospora curvata DSM 43183] gi|268313295|gb|ACY99669.1| type II secretion system protein [Thermomonospora curvata DSM 43183] Length = 331 Score = 65.1 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 71/183 (38%), Gaps = 2/183 (1%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R L+ + + ++ + + A+ V ++ ++ R +++ H + + Sbjct: 95 ERRAMARLEALAAWTESLRDTIAGAVGLEQAIPSSVRAAAPALQQPLRTLVDRLHTRMPM 154 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 E++ R + + + G L + L LS R +M+ +V+A Sbjct: 155 PEALRRFADDLNDPSADLVVAALILNARLRGPGLRDMLTALSASARAELDMRRRVEADRR 214 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + S ++ + + L+ + Y+ + G M+L V A + +R + Sbjct: 215 ATRRSVNVVVGVSVGTALLLTIFNRSYVEP-YDGLLGQMVLCVVLALYAAAFLWLRRLAR 273 Query: 185 FDV 187 +D+ Sbjct: 274 YDM 276 >gi|32452628|gb|AAP43990.1| TadC [Aggregatibacter actinomycetemcomitans] Length = 288 Score = 65.1 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 69/157 (43%), Gaps = 4/157 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 + ++K + K ++D +D++ +++ G+ + A+ + ++ Sbjct: 130 IGSILKSKIKKIMNDLAGFIDLVAVNLQTGMGIEAALKHVATDFKILNPDLTYVMLRIIR 189 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + +S+++ + +P E+ F TV+ G ++ L LS +R+ + + + Sbjct: 190 KSEITGMSQALQDLSVSLPTAEIRMFCTVMQQSLNFGSSIYHQLVQLSTDIREIQLLAIE 249 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + ++ AK S +I + F + L+ +PG M V Sbjct: 250 EKLGTLSAKMSVPLILFIMFPIIILI--LAPGVMRVF 284 >gi|330830427|ref|YP_004393379.1| Flp pilus assembly protein TadC [Aeromonas veronii B565] gi|328805563|gb|AEB50762.1| Flp pilus assembly protein TadC [Aeromonas veronii B565] Length = 294 Score = 65.1 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 62/149 (41%), Gaps = 3/149 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 ++ +K A P+A+D++V SV AGL + A+ + + +F R Sbjct: 135 LQWRARKVKAAQQKVVPDAIDLLVISVEAGLALDRALLRVGHYLEALEPGLARQFLRTHA 194 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + ++R+ L E+ + + + Q G L+E + +S+ R + + Sbjct: 195 EIQMRGDQASCLARLAWRTGLPELDRLANTLQMAQQYGSPLAETMRTISQEARQMRRLAL 254 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF 146 + QA S+ K + + + + L+ Sbjct: 255 EEQAGSLPGKITLIQMALIMLPMLVLIIA 283 >gi|172035334|ref|YP_001801835.1| pilin biogenesis protein [Cyanothece sp. ATCC 51142] gi|171696788|gb|ACB49769.1| pilin biogenesis protein [Cyanothece sp. ATCC 51142] Length = 404 Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 57/166 (34%), Gaps = 10/166 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+ + + V+ Q ++ ++ + G+SLSE++ + Sbjct: 69 FSRQFSVMINAGVAIVRCLGVLADQATNPKLKKALLAISAEVQQGVSLSEALGK-----H 123 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + GG L E L L+++L D ++ ++++ + + Sbjct: 124 EDCFDQLYVSMVEAGETGGVLDEVLNRLAKLLEDMARLQNQIKSAMAYPVTVGILAVIVF 183 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 F ++ + G L + L GIM ++ Sbjct: 184 FAMTIFLIPVFAGIFEDLGAELPALTQFM----LYLSGIMRSWKIL 225 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 12/134 (8%), Positives = 38/134 (28%), Gaps = 7/134 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + R+G+P+ ++ ++ + + + G +S ++ Sbjct: 273 FCRVFGTLTRSGVPILTSLEIVCNTVGNKVIANAVAGAQAEIQQGGMMSLALQNA----- 327 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L + ++ D K +E I G + Sbjct: 328 -NVFPQLAIQMICIGEETGELDAMMMKVADFYEDEVEQAVKALTSVIEPLMMVLIAGMVG 386 Query: 138 FCVSTLVYFTSPGY 151 + ++ + Sbjct: 387 VILLSMYLPMFKIF 400 >gi|21234166|ref|NP_639743.1| putative integral membrane protein [Streptomyces coelicolor A3(2)] gi|13620652|emb|CAC36691.1| putative integral membrane protein [Streptomyces coelicolor A3(2)] Length = 330 Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 20/181 (11%), Positives = 58/181 (32%), Gaps = 4/181 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 + R + L+ + AG+ + + + P+ + R + E G+ Sbjct: 105 AQARIERLE-ALAQWLNHLAGVHTAGIGLPATIRASAKNAPSPIAASVRTLSERLRSGME 163 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAKVQALS 123 ++ M + + L++AL ++ + + ++A Sbjct: 164 AHDAFELFADEMADGVFDHVVLLFQSHAVYKGPGLADALEAMAVTIHQQAADARDIEADR 223 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + SA ++ ++ + P G ++L + +M++R + Sbjct: 224 AKVRKSARLVSI--VICIVVLGCMLNEAWSAWYQTPPGQVVLALLGGGFAWTLMMLRRIA 281 Query: 184 N 184 Sbjct: 282 R 282 >gi|262273878|ref|ZP_06051691.1| MSHA biogenesis protein MshG [Grimontia hollisae CIP 101886] gi|262222293|gb|EEY73605.1| MSHA biogenesis protein MshG [Grimontia hollisae CIP 101886] Length = 405 Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 18/165 (10%), Positives = 48/165 (29%), Gaps = 6/165 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVR 74 ++AG+P+ A+ + ++D + V G +S ++ Sbjct: 66 LVIFSRQAYSLIKAGVPLLRAINGLAQSTTDKLLKTALENVASELSNGSPMSVAMRNHPN 125 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 S + + G L +A+ L+ + ++++ +I Sbjct: 126 -----VFSELFVSLVQVGENTGRLDDAMYQLAEYYEQEMETRRRIKSALRYPTFVMVVII 180 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ V G D + +A + + + Sbjct: 181 GAMAFLNVNVIPQFAGMFARFGADLPLPTQILMATSGFFVDFWWL 225 Score = 40.1 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 38/133 (28%), Gaps = 7/133 (5%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVR 74 +RAG+P++ A+ + + + E ++ G++LS Sbjct: 269 MSRFSRTFALMLRAGVPLNTALHMSGEALDNHFLAGEVDKMKAAIESGVNLSVVTEDSEL 328 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + P + + G + L S + K + ME + G Sbjct: 329 FTP------LVHQMIQVGEETGQIDNLLLEASDFYDREVDYDLKTLSARMEPILLFIVAG 382 Query: 135 SLPFCVSTLVYFT 147 + + Sbjct: 383 MVLILALGIFLPM 395 >gi|301168390|emb|CBW27980.1| putative membrane protein [Bacteriovorax marinus SJ] Length = 404 Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 66/145 (45%), Gaps = 1/145 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 +K I+ R + + P +D++ SV AGL A+ +V ++ + EF +I+ Sbjct: 247 IKGRIEMRQKEVIMAMPFCVDMLALSVEAGLDFVAAMTKVVEKAKKTALSEEFETMIKEI 306 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 +G S +E++ + + L ++S F + +G ++ L LS +R +K+ + + Sbjct: 307 RIGASRAEALRNLAWRIDLIQISSFCATLIAADSVGASIGPILKALSMEIRQKKSSEVEK 366 Query: 120 QALSMEAKASAWIIGSLPFCVSTLV 144 + K ++ + V +V Sbjct: 367 AGATAATKILFPMLFLIVPAVFIVV 391 >gi|220913151|ref|YP_002488460.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] gi|219860029|gb|ACL40371.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] Length = 312 Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 61/150 (40%), Gaps = 2/150 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +++R + + +FP+ +++ +V AG + A+ + + + EF ++ G Sbjct: 161 VRRREERMMAEFPSLAELMALAVGAGESATGALDRVCRSARGELSKEFSTILAETRAGKP 220 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L ++ L + F I V + G L++ L ++ +RD K + + Sbjct: 221 LVNALQEFSARTDLAPLVRFVDGIVVAVERGTPLADVLRAQAQDVRDTA--KRDLMEAAG 278 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + + + T+V+ PG + Sbjct: 279 KKEIAMMVPLVFGVLPLTVVFAVFPGISAI 308 >gi|152966970|ref|YP_001362754.1| type II secretion system protein [Kineococcus radiotolerans SRS30216] gi|151361487|gb|ABS04490.1| type II secretion system protein [Kineococcus radiotolerans SRS30216] Length = 417 Score = 64.8 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 56/181 (30%), Gaps = 19/181 (10%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D V +GL + A++++ Q+ + + V G SLS ++++ Sbjct: 78 KDLALMSRQFATMVSSGLSLIRALSILAEQAESKKLAATLGEVRAEVETGASLSTTLAKH 137 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R P + ++GG L + L ++ +KAKV++ I Sbjct: 138 DRIFPP-----LMINMIRAGEVGGFLDQVLVQIADNFESEVKLKAKVKSAMTYPVVVFII 192 Query: 133 IGSLPFCVSTLVYFTSPGYMNVL-------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + + L ++ A ++ I+ Sbjct: 193 AILAVVGMLLFIVPVFTQMFSDLGGKLPLPTQILVYLSTAMKWGAPFGVVALVVGSIVWN 252 Query: 180 R 180 R Sbjct: 253 R 253 Score = 40.1 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 14/137 (10%), Positives = 36/137 (26%), Gaps = 5/137 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + +R+G+P+ ++ ++ + + V + S+ S Sbjct: 282 ALSRFTRNLGTMLRSGVPILQSLEIVGNAAGNVVIR-----RAAIDVMESVRSGRSLAGP 336 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + G L L +S +E A + G Sbjct: 337 LAEHKVFPAMVVQMMSVGEDTGALDSMLHKISDFYDQEVEATTDALTSLIEPLMIAVLGG 396 Query: 135 SLPFCVSTLVYFTSPGY 151 + + L + Sbjct: 397 IIGSMIIALYMPIFGVF 413 >gi|124486274|ref|YP_001030890.1| hypothetical protein Mlab_1458 [Methanocorpusculum labreanum Z] gi|124363815|gb|ABN07623.1| type II secretion system protein [Methanocorpusculum labreanum Z] Length = 625 Score = 64.8 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 20/152 (13%), Positives = 55/152 (36%), Gaps = 3/152 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R K P+ + V+ + ++ A+ + + ++ + R + G LS Sbjct: 405 RRIDKVEGALPDFCRQLSSLVKYNMTLTHAIELTAQEGKSYIQEDIRILSRDLLWGEKLS 464 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ R M V ++S +LS + + R+++K + ++ Sbjct: 465 SALKRFADRMKNLSVDRLVILLSQTEHFTNDLSLTIDLQYHEAKARESLKRERKSDMG-- 522 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158 I+ + S ++N+++ + Sbjct: 523 -VYVVIVFMAFAVFVFVQVIMSEVFLNIMMEN 553 Score = 40.1 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 66/183 (36%), Gaps = 7/183 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHL- 61 ++ R + + G + +V I EFR+V+ Sbjct: 100 MRSRKRFIEASMYEMVSFMYALHHCGATLYASVHSIAKYADFYGDAAKEFRQVVSDMDFC 159 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G +I R+ P ++ FF + +S + GN L + ++ + + Sbjct: 160 GYDQFTAIQRLADTTPSDKLRFFLSELSSTYRSIGNAEVFLHGKLQEMQKESEVAQRSYL 219 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 S+ A A +I + + ++ G ++ +DP +L V + IG ++ L Sbjct: 220 SSLGAIAEMYITLFVAGPLFVVIVIMVIGLIS--GSDP--MILAIVVYLMLPIGTVIFLL 275 Query: 182 MIN 184 +++ Sbjct: 276 LLD 278 >gi|318607112|emb|CBY28610.1| type IV fimbrial assembly protein PilC [Yersinia enterocolitica subsp. palearctica Y11] Length = 399 Score = 64.8 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 57/173 (32%), Gaps = 8/173 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + + ++AGLP+ + + ++ + P + + + + G SLSE+++ Sbjct: 59 ERLIAITRQLATLLQAGLPLVNCLQLLAQEIDALPWQCLLQEISQQVSQGQSLSEAMAHY 118 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P + +L GNL + L ++ ++ KV + Sbjct: 119 PHTFPQLYPP-----VIAMGELTGNLEQCCVQLVLHQERQQKLQKKVIKALKYPVFVCIV 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMI 183 + + LV LL ++A G ++ L+ Sbjct: 174 ALVVSTVMLVLVLPEFAQIYQSFDTPLPVLTATLLFMSAFLTAYGPYLIALLT 226 Score = 37.4 bits (85), Expect = 0.91, Method: Composition-based stats. Identities = 16/134 (11%), Positives = 41/134 (30%), Gaps = 7/134 (5%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVR 74 + + AGLP++ + + ++ + + + + G+ L +I++ Sbjct: 265 LSQIFQTLAITQHAGLPLTAGLDAALRSINNDTYQQALKSIQKQIKQGIPLHIAITQHPL 324 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + P + + G L L L+ + + A +E I Sbjct: 325 FPP------LCQQMVRVGEESGALDVLLEKLAGWQQQQTQDLADNLTQMLEPLLMLIIGS 378 Query: 135 SLPFCVSTLVYFTS 148 + V + Sbjct: 379 IVGVLVIAMYLPIF 392 >gi|313140673|ref|ZP_07802866.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] gi|313133183|gb|EFR50800.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] Length = 252 Score = 64.8 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 5/169 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + + SVRAG +SD +A + + L Sbjct: 80 LSGVIAHMSSSVRAGGMISDVLADV----DGSGFAGVPLTASRLKRLLMRQRMPGESAAQ 135 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + ++ + G +L++ L + R + + ++ +A+A ++G+ Sbjct: 136 AEHVAF-ELAVACAMCERSGCSLADCLDVVGENHRISRLLHDSRRSAFAVPRATAALLGA 194 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 LP L + VL +G+ L V A +G++ M M+ Sbjct: 195 LPLVTIGLGELLGARPVQVLFGSAQGNACLAVGGAGYALGLLWMSSMMR 243 >gi|311693308|gb|ADP96181.1| type II secretion system protein [marine bacterium HP15] Length = 409 Score = 64.8 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 55/171 (32%), Gaps = 6/171 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLS 66 R LD+ + +AG+P+ + + + S + V G +++ Sbjct: 61 RKKVTLDELIVFCRQMHALTKAGIPLIRTMRGLAETTRSPVLAEVLEDVTTRLEGGTTMA 120 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + S + + G L +A LS IL ++ K +++ Sbjct: 121 TAMQAHPK-----VFSELFIAMIHVGENTGMLDDAFRRLSEILELERDTKRRLKQAMRYP 175 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + S V+ LV N L D + V + L+ Sbjct: 176 MFVIIALLSALMIVNFLVIPKFASVFNKLGADLPFLTQVLVGTSNFLLAYW 226 Score = 42.4 bits (98), Expect = 0.028, Method: Composition-based stats. Identities = 15/132 (11%), Positives = 41/132 (31%), Gaps = 5/132 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + AG+PV+ A+ V+ + + S + + + S + Sbjct: 272 LSRFSRNFATMLSAGMPVTTALTVVADTTDNAWISSHIK-----DMRAGIERGESLLRTA 326 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + + G++ + L N++ + + K A S+E + Sbjct: 327 RHSEMFTPLILQMIAVGEETGSVDDMLNNVADFYDEDVDYGLKRLAESIEPILIVAMGIL 386 Query: 136 LPFCVSTLVYFT 147 + + Sbjct: 387 VLILALGVFLPI 398 >gi|256826297|ref|YP_003150257.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547] gi|256689690|gb|ACV07492.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547] Length = 264 Score = 64.8 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 68/178 (38%), Gaps = 2/178 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R D+ LD + ++ AGLP + A+ ++ E V+ G L Sbjct: 81 RVRVTDDEVLRLLDGLAAALSAGLPPAAALRLVADSGPAVPWLEP--VLGAGEQGGLLGA 138 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 S ++ + ++ ++ + G L+ A+A + +R ++ + Q+ + A Sbjct: 139 SWKQVAAGHQSVALEQVASAWALSERSGAALAPAVAMAAETVRRQRESRQTAQSAASGAM 198 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AS +++ LP + + P G + A +++G + R ++ Sbjct: 199 ASMYMLSLLPLVGLAGAGALGWSPQELYLQQPLGLVSALAGVALLVVGWLASRRLVAL 256 >gi|297560195|ref|YP_003679169.1| type II secretion system F domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844643|gb|ADH66663.1| Type II secretion system F domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 297 Score = 64.8 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 63/174 (36%), Gaps = 2/174 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + +++ + + AVA V + +PVR R+ E G ++ Sbjct: 105 EAVAAWTEMLRDLMAGAAGLHQAVAATVPIAPEPVREPVARLAERLRAGQPTQGALRAFA 164 Query: 74 RYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + +S + +L L +L+ R++ M +V A + S I Sbjct: 165 DEVDNPTADLVAAALSTAATRHATDLGTLLGSLAEAAREQAAMLVRVAASRARLRTSTRI 224 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 I ++ L+ +PGY+ + G ++L ++ + M FD Sbjct: 225 IVGTTVGMAALLMAFNPGYLEP-FDGFLGQVVLAGIGGLWAGALVWLSRMSRFD 277 >gi|258620798|ref|ZP_05715833.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573] gi|258624768|ref|ZP_05719699.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603] gi|262173889|ref|ZP_06041566.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio mimicus MB-451] gi|258582930|gb|EEW07748.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603] gi|258586996|gb|EEW11710.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573] gi|261891247|gb|EEY37234.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio mimicus MB-451] Length = 291 Score = 64.8 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 59/154 (38%), Gaps = 4/154 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--TQHL 61 KK T K P LD++ V G+ + + + + V + + Sbjct: 137 RGKKITKKISSRLPFLLDLMNVCVHTGMTIEACLEYLAFELRTVDHHLAYVVKKTVERSK 196 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + L ++++ +P E F ++ + G ++ LA L+ +R+ M + + Sbjct: 197 LVGLEKALNEFYDLVPTAEAQSFVMTMTQSLKYGSSIGPVLATLASDIREMNMMDLEEKI 256 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 M AK S +I + + L+ PG M + Sbjct: 257 GKMGAKMSIPLIAFIMVPIIILIAA--PGIMRMF 288 >gi|257139199|ref|ZP_05587461.1| type II secretion system protein F [Burkholderia thailandensis E264] Length = 314 Score = 64.8 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 62/146 (42%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + +R P+ALD++V AG ++ A+ + + P+ EF + Sbjct: 154 LGFAVARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELGTICPPLADEFSVCAD 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + +++ M + L + T + Q G ++++L LSR R + + Sbjct: 214 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 273 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K + ++ + V+ + Sbjct: 274 EEKAAKLAPKMTLPMMLFVMPTVALI 299 >gi|123441047|ref|YP_001005036.1| type IV pilin biogenesis protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088008|emb|CAL10796.1| putative type II secretion system protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 399 Score = 64.8 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 57/173 (32%), Gaps = 8/173 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + + ++AGLP+ + + ++ + P + + + + G SLSE+++ Sbjct: 59 ERLIAITRQLATLLQAGLPLVNCLQLLAQEIDALPWQCLLQEISQQVSQGQSLSEAMAHY 118 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P + +L GNL + L ++ ++ KV + Sbjct: 119 PHTFPQLYPP-----VIAMGELTGNLEQCCVQLVLHQERQQKLQKKVIKALKYPVFVCIV 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMI 183 + + LV LL ++A G ++ L+ Sbjct: 174 ALVVSTVMLVLVLPEFAQIYQSFDTPLPVLTATLLFMSAFLTAYGPYLIALLT 226 Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 41/134 (30%), Gaps = 7/134 (5%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVR 74 + + AGLP++ + + ++ + R + + G+ L +I++ Sbjct: 265 LSQIFQTLAITQHAGLPLTSGLDAALRSINNDTYQQALRSIQKQIKQGIPLHIAITQHPL 324 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + P + + G L L L+ + + A +E I Sbjct: 325 FPP------LCQQMVRVGEESGALDVLLEKLAGWQQQQTQDLADNLTQMLEPLLMLIIGS 378 Query: 135 SLPFCVSTLVYFTS 148 + V + Sbjct: 379 IVGVLVIAMYLPIF 392 >gi|332160427|ref|YP_004297004.1| type IV pilin biogenesis protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664657|gb|ADZ41301.1| type IV pilin biogenesis protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860122|emb|CBX70445.1| protein transport protein hofC [Yersinia enterocolitica W22703] Length = 399 Score = 64.8 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 57/173 (32%), Gaps = 8/173 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + + ++AGLP+ + + ++ + P + + + + G SLSE+++ Sbjct: 59 ERLIAITRQLATLLQAGLPLVNCLQLLAQEIDALPWQCLLQEISQQVSQGQSLSEAMAHY 118 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P + +L GNL + L ++ ++ KV + Sbjct: 119 PHTFPQLYPP-----VIAMGELTGNLEQCCVQLVLHQERQQKLQKKVIKALKYPVFVCIV 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMI 183 + + LV LL ++A G ++ L+ Sbjct: 174 ALVVSTVMLVLVLPEFAQIYQSFDTPLPVLTATLLFMSAFLTAYGPYLIALLT 226 Score = 37.4 bits (85), Expect = 0.83, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 41/134 (30%), Gaps = 7/134 (5%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVR 74 + + AGLP++ + + ++ + R + + G+ L +I++ Sbjct: 265 LSQIFQTLAITQHAGLPLTAGLDAALRSINNDTYQQALRSIQKQIKQGIPLHIAITQHPL 324 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + P + + G L L L+ + + A +E I Sbjct: 325 FPP------LCQQMVRVGEESGALDVLLEKLAGWQQQQTQDLADNLTQMLEPLLMLIIGS 378 Query: 135 SLPFCVSTLVYFTS 148 + V + Sbjct: 379 IVGVLVIAMYLPIF 392 >gi|293391327|ref|ZP_06635661.1| Flp pilus assembly protein TadC [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951861|gb|EFE01980.1| Flp pilus assembly protein TadC [Aggregatibacter actinomycetemcomitans D7S-1] Length = 288 Score = 64.8 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 69/157 (43%), Gaps = 4/157 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 + ++K + K ++D +D++ +++ G+ + A+ + ++ Sbjct: 130 IGSILKSKIKKIMNDLAGFIDLVAVNLQTGMGIEAALKHVATDFKILNPDLTYVMLRIIR 189 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + +S+++ + +P E+ F TV+ G ++ L LS +R+ + + + Sbjct: 190 KSEITGMSQALQDLSVSLPTAEIRMFCTVMQQSLNFGSSIYHQLVQLSTDIREIQLLAIE 249 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + ++ AK S +I + F + L+ +PG M V Sbjct: 250 EKLGTLSAKMSVPLILFIMFPIIILI--LAPGVMRVF 284 >gi|262166739|ref|ZP_06034476.1| general secretion pathway protein F [Vibrio mimicus VM223] gi|262026455|gb|EEY45123.1| general secretion pathway protein F [Vibrio mimicus VM223] Length = 406 Score = 64.8 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 57/172 (33%), Gaps = 8/172 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + V++G+P+ + + + QS +R+ V G +LS+S+ Sbjct: 67 DLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G+L L L+ +R+ M++K+Q + Sbjct: 127 -----HVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183 + + V G + LL + GI ++ ++ Sbjct: 182 VGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQNWGIWLLIGLM 233 >gi|189424344|ref|YP_001951521.1| general secretion pathway protein F [Geobacter lovleyi SZ] gi|189420603|gb|ACD95001.1| general secretion pathway protein F [Geobacter lovleyi SZ] Length = 403 Score = 64.8 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 52/164 (31%), Gaps = 9/164 (5%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66 R A + + A +P+ +A+ + Q +RS R+ G L+ Sbjct: 58 RKAVSVASLALFTRRLSTLTAAAVPIHEALEALHRQEKTGELRSILSRLRSRLAEGSPLA 117 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++S + + + GG L + L L+ L ++ M+ V Sbjct: 118 RAMSSEPKVFG-----ESYIAMVAAGEAGGALDKVLQRLADFLERQEEMRRSVSTALAYP 172 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 A + + L+ F P + + L VA Sbjct: 173 GLMAVVGSG---VMLFLLTFVVPKITGIFADTKATLPFLTVALL 213 >gi|114321229|ref|YP_742912.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227623|gb|ABI57422.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1] Length = 417 Score = 64.8 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 16/168 (9%), Positives = 48/168 (28%), Gaps = 6/168 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + +++G+P+ A+ ++ +R + G +L ++ + Sbjct: 78 ADIAYFSRQLATMLQSGVPLVQALDIVGKGDEHAGMRQLVAEIKNDVESGTALHTALQKH 137 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R + + G L L ++ +++K K++ A + Sbjct: 138 PR-----YFDDLFVSLVAAGESAGVLDTLLDKIATYKEKTESIKGKIKKALFYPTAVIVV 192 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + V D + + + + + Sbjct: 193 AIVVTAILLIWVVPQFESLFRGFGADLPLFTQMVINLSDFMQSYWFIM 240 >gi|161523241|ref|YP_001578253.1| general secretion pathway protein F [Burkholderia multivorans ATCC 17616] gi|189348902|ref|YP_001944530.1| general secretion pathway protein F [Burkholderia multivorans ATCC 17616] gi|221202226|ref|ZP_03575261.1| general secretion pathway protein F [Burkholderia multivorans CGD2M] gi|221208713|ref|ZP_03581712.1| general secretion pathway protein F [Burkholderia multivorans CGD2] gi|221214338|ref|ZP_03587310.1| general secretion pathway protein F [Burkholderia multivorans CGD1] gi|160340670|gb|ABX13756.1| general secretion pathway protein F [Burkholderia multivorans ATCC 17616] gi|189332924|dbj|BAG41994.1| general secretion pathway protein F [Burkholderia multivorans ATCC 17616] gi|221165993|gb|EED98467.1| general secretion pathway protein F [Burkholderia multivorans CGD1] gi|221171345|gb|EEE03793.1| general secretion pathway protein F [Burkholderia multivorans CGD2] gi|221178020|gb|EEE10432.1| general secretion pathway protein F [Burkholderia multivorans CGD2M] Length = 405 Score = 64.8 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 59/184 (32%), Gaps = 12/184 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + + +R + + AGLP+ +A+ V+ QS D +R + Sbjct: 59 LGRKLSQREQAI------LTRQLASLLIAGLPLDEALGVLTEQSERDYIRELMAAIRAEV 112 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SL+ ++S+ R + + + G L L+ L+ + R +K K+ Sbjct: 113 LGGHSLANALSQHPR-----DFPEIYRALVSAGEHTGKLGIVLSRLADYIEQRNALKQKI 167 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 I + + + V ++ +A + + Sbjct: 168 LLAFTYPAIVTVIAFGIVTFLLSYVVPQVVNVFASTKQQLPLLTIVMMALSGFVRHWWWA 227 Query: 180 RLMI 183 L+ Sbjct: 228 ILIA 231 Score = 34.7 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ S+ I G +LS +++ + + P Sbjct: 274 FASTLGILTAAGVPILRALQAAGETLSNRAMRANIDDAIVRVREGSALSRALNNVKTFPP 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+++ L + + +E + G + Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAADGEARELERRTMFLTSLLEPLLILAMGGIVL 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 VIVLAVMLPI 397 >gi|238750902|ref|ZP_04612399.1| Type II secretion system protein [Yersinia rohdei ATCC 43380] gi|238710816|gb|EEQ03037.1| Type II secretion system protein [Yersinia rohdei ATCC 43380] Length = 265 Score = 64.8 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 66/159 (41%), Gaps = 4/159 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 +K+++ KRT L P +DI V++G+ + A+ + +I+ Sbjct: 105 IKNILYKRTESVLKSLPFFIDITAACVQSGMTIDGALNYTAKKFKLINPDLSLIMIKMSK 164 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + L +I + + E+ F + + G ++ + LA LS+ +R+ + + ++ Sbjct: 165 RAEINGLELAIKELHQCSTAMEIRMFCSALQYSISFGSSIYDQLAKLSQEMREMQLLVSE 224 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + + K + + + LV SP + +L + Sbjct: 225 EKVSKLSTKLTFPLFIFILIPFIVLV--ISPSVLELLTH 261 >gi|120555593|ref|YP_959944.1| type II secretion system protein [Marinobacter aquaeolei VT8] gi|120325442|gb|ABM19757.1| type II secretion system protein [Marinobacter aquaeolei VT8] Length = 406 Score = 64.8 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 18/171 (10%), Positives = 47/171 (27%), Gaps = 6/171 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D + ++AG+P+ + ++ + E I S Sbjct: 67 DIAMLTRQLATMMKAGVPLVQSFDIVADGLENKGLQELVMTIRNDISSGS----GFASSL 122 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + G L + L ++ L + +K KV+ A + Sbjct: 123 RKHPKYFDDLYCNLVDSGEKAGALEQMLDRIATYLEKTEILKKKVKKAMTYPIAVVVVAI 182 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMI 183 + + V D ++ ++ +V+ ++ Sbjct: 183 VVTAILLVKVVPQFESLFQGFGADLPVFTQFIIRISEWMQSWWFVVLLGIV 233 Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 15/128 (11%), Positives = 40/128 (31%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 ++ + AG+P+ DA+ + G + + V ++ +S Sbjct: 277 RVLSTTFAAGVPLVDALDSVAGATGNAVYR-----DAVMNIKNDVSSGTQLQASMRQQGV 331 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + ++ + GNL + L+ ++ + ME A + + + Sbjct: 332 FPVMAVQLTAIGEESGNLDDMLSKVAEHYEGVVDDMVDNLTALMEPMIMAVLGVLVGGLI 391 Query: 141 STLVYFTS 148 + Sbjct: 392 IGMYLPIF 399 >gi|56459482|ref|YP_154763.1| Type II secretory pathway [Idiomarina loihiensis L2TR] gi|56178492|gb|AAV81214.1| Type II secretory pathway [Idiomarina loihiensis L2TR] Length = 412 Score = 64.8 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 23/170 (13%), Positives = 54/170 (31%), Gaps = 6/170 (3%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSE 67 LD+ + +AG+P+ A+ + + + +R + V E G +LS Sbjct: 66 QKVSLDELIIFCRQMYSLTQAGIPMLRAIEGLADTTQNKRLRKTLQDVHEQLERGRNLSS 125 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + I + G L E+ LS L ++ + +++A + Sbjct: 126 A-----MSHHRGVFPRLVIAIVHVGENTGQLEESFQQLSVYLEKEQDTRKRIKAATRYPS 180 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + F ++ V T + + + ++ + Sbjct: 181 FVLIALVIAMFVLNIFVIPTFASMFSRFNVELPWATRALLGSSEFFVAYW 230 Score = 40.9 bits (94), Expect = 0.074, Method: Composition-based stats. Identities = 15/136 (11%), Positives = 40/136 (29%), Gaps = 5/136 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 + AG+P++ A++++ + + G+ E++SR Sbjct: 272 MRSMLGRFARSFSVMIGAGVPLTQALSLVAEAVDNAWMEKRII---EMRRGIERGENLSR 328 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + R L + + + G + L ++ + K +E A Sbjct: 329 VARQSGL--FTPLILQMISVGEETGRVDVLLLEVAEYYERETDYDLKTLTARIEPLMIAV 386 Query: 132 IIGSLPFCVSTLVYFT 147 + + + Sbjct: 387 VAVMVLILALGIFTPM 402 >gi|284050859|ref|ZP_06381069.1| type II secretion system protein [Arthrospira platensis str. Paraca] gi|291567073|dbj|BAI89345.1| pilin biogenesis protein [Arthrospira platensis NIES-39] Length = 377 Score = 64.8 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 21/164 (12%), Positives = 57/164 (34%), Gaps = 6/164 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 D AG+ ++ ++V+ Q + ++ + G LS S+ + Sbjct: 35 KDLAIFARQFAAMFNAGISMARCLSVLGEQCENAKLKRAINTLRADVEEGEELSLSMRKF 94 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + GG L E L L+ ++ ++++++ + K +I Sbjct: 95 PD-----VFDQLFVSMVWAGETGGVLDETLERLAVMMEKNHKTQSEIKSATSYPKTVLFI 149 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 ++ F ++T + T G + + ++ + + Sbjct: 150 AIAVFFGMATFLLPTFSGIFEQIGVELPLFTVMMLKISAFCTTW 193 >gi|318080885|ref|ZP_07988217.1| type II secretion system F protein [Streptomyces sp. SA3_actF] Length = 219 Score = 64.8 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 62/166 (37%), Gaps = 1/166 (0%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 ++ VRAG ++A+A V + + ++ G + ++ + R Sbjct: 45 LCGLLAGEVRAGSGPAEALAHAVN-ACGELGPARADILAAARFGGDVPAALRQAARVPGA 103 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + V G L+ L L R L ++ +A + A A+A+A ++ +LP Sbjct: 104 EGLVGLAACWRVALDRGAGLAVGLERLERALLADRDQRADLLAQLSGARATAGLLAALPL 163 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + VL G + L + + G+ ++ Sbjct: 164 LGLLLGSAVGAAPLRVLFGSAPGFVCLVIGSGLEAAGVWWCLWLVR 209 >gi|258624629|ref|ZP_05719565.1| General secretion pathway protein F [Vibrio mimicus VM603] gi|258583093|gb|EEW07906.1| General secretion pathway protein F [Vibrio mimicus VM603] Length = 406 Score = 64.8 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 57/172 (33%), Gaps = 8/172 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + V++G+P+ + + + QS +R+ V G +LS+S+ Sbjct: 67 DLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G+L L L+ +R+ M++K+Q + Sbjct: 127 -----HVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183 + + V G + LL + GI ++ ++ Sbjct: 182 VGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQNWGIWLLIGLM 233 >gi|197118970|ref|YP_002139397.1| type IV pilus biogenesis protein PilC [Geobacter bemidjiensis Bem] gi|197088330|gb|ACH39601.1| type IV pilus biogenesis protein PilC [Geobacter bemidjiensis Bem] Length = 407 Score = 64.8 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 61/178 (34%), Gaps = 9/178 (5%) Query: 10 AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSE 67 K D + +GLP+ + ++ GQ + E +V E+ G + ++ Sbjct: 61 KKIETKDLVVFTRQFATMIDSGLPLVQCLDILSGQQENKTFKEILVKVKESVESGSTFAD 120 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++++ + + ++GG L LA L+ + +K +V+ + Sbjct: 121 ALAKHPKA-----FDQLYVNLVAAGEVGGILDTILARLAAYIEKAMKLKKQVKGAMVYPI 175 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 I + + V T + + +A + L +V+ +I Sbjct: 176 TIMSIAVVVVGVILVFVIPTFAKMFADFGGELPMPTKIVIAMSNFLTKYLVV--IIAI 231 Score = 38.9 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 11/130 (8%), Positives = 34/130 (26%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+P+ D + ++ + + + E + P Sbjct: 274 FTRTLGTMISSGVPIMDGLEIVAKTAGNKIVEEAIYKVRQSISEGKTIAEPLAESGVFPP 333 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G + L ++ D + ME ++ ++ Sbjct: 334 -----MVVQMISVGEATGAMDAMLNKIADFYDDEVDDAVGAMTSMMEPLLMVFLGTTVGG 388 Query: 139 CVSTLVYFTS 148 V + Sbjct: 389 LVVAMYLPIF 398 >gi|258620395|ref|ZP_05715433.1| General secretion pathway protein F [Vibrio mimicus VM573] gi|258587274|gb|EEW11985.1| General secretion pathway protein F [Vibrio mimicus VM573] Length = 406 Score = 64.8 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 57/172 (33%), Gaps = 8/172 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + V++G+P+ + + + QS +R+ V G +LS+S+ Sbjct: 67 DLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G+L L L+ +R+ M++K+Q + Sbjct: 127 -----HVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183 + + V G + LL + GI ++ ++ Sbjct: 182 VGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQNWGIWLLIGLM 233 >gi|284029668|ref|YP_003379599.1| type II secretion system protein [Kribbella flavida DSM 17836] gi|283808961|gb|ADB30800.1| type II secretion system protein [Kribbella flavida DSM 17836] Length = 312 Score = 64.8 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 63/154 (40%), Gaps = 2/154 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++KR + L + P +++ SV AG + A+ + + E +RV+ Sbjct: 156 LTGQVRKRERRLLAELPTVAELLALSVAAGEGPAAALDRVARSCRGELADELQRVLAETR 215 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL ++ + L +S F+ ++V + G L++ L + +R+ + ++ Sbjct: 216 AGSSLVRALDGLADRTGLVALSRFADGLAVALERGTPLADVLRAQAGDIRE--ASRRELI 273 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + + T+ + PG + + Sbjct: 274 ESGARREVAMMVPVVFLVLPVTIAFAFYPGAVGI 307 >gi|262273800|ref|ZP_06051613.1| type 4 fimbrial assembly protein PilC [Grimontia hollisae CIP 101886] gi|262222215|gb|EEY73527.1| type 4 fimbrial assembly protein PilC [Grimontia hollisae CIP 101886] Length = 407 Score = 64.8 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 63/181 (34%), Gaps = 8/181 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGL 63 ++++ A D + + AG+P+ + + ++ ++ ++ G Sbjct: 58 VRRKNAANAKDITLFSRQMATMLEAGVPLGETLRLLKASAKKAEMKFILGQIYSHIEAGS 117 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 SL++++ F + + G+L + A + + +AKV Sbjct: 118 SLAQAMKTSS-----PLFDQFYCDLVATGEQTGHLEQIFARICVYREKSEETRAKVIKAM 172 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRL 181 + ++ + + V T + + +LG++ A L GI ++ Sbjct: 173 IYPSIVCFLAILVTVGMLIFVIPTFKDVFSSFGAELPWFTRKVLGISDAIQLYGIYMLLA 232 Query: 182 M 182 + Sbjct: 233 L 233 Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 13/131 (9%), Positives = 40/131 (30%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P+ + ++ +++ + V + G L +I ++ Sbjct: 276 FTRTLATTFSAGIPLLNGLSAAGKTANNTHYQRVIEEVHKQTSGGRPLHRAIKETGQFPD 335 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + + G L + L ++ I + +E + + Sbjct: 336 M------MIQMVMIGEESGALDDMLNKVAGIYEADVDNTVDNLGKILEPMIIVVLGVLIG 389 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 390 SLVVAMYLPMF 400 >gi|157960241|ref|YP_001500275.1| type II secretion system protein [Shewanella pealeana ATCC 700345] gi|157845241|gb|ABV85740.1| type II secretion system protein [Shewanella pealeana ATCC 700345] Length = 422 Score = 64.8 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 18/171 (10%), Positives = 49/171 (28%), Gaps = 8/171 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMV 73 D I + AG+P+ + ++ E ++ G+ LS+++ Sbjct: 82 DIAMVTRQIATMLAAGVPLVTTIELLGRGHEKAKMRELLATILAEIQSGIPLSDALR--- 138 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 Q + + G+L ++ + +K+K++ A + Sbjct: 139 --PHRQYFDDLYVDLVAAGEHSGSLDTVFDRIATYREKSEALKSKIKKAMFYPAAVVIVA 196 Query: 134 GSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVMRLM 182 + + V + P +L ++ + + Sbjct: 197 ILVTSLLLLFVVPQFEEIFKGFGAELPPFTQFVLKISRGLEHSWYFFVLAI 247 >gi|56752033|ref|YP_172734.1| type IV pilus assembly protein PilC [Synechococcus elongatus PCC 6301] gi|56686992|dbj|BAD80214.1| type IV pilus assembly protein PilC [Synechococcus elongatus PCC 6301] Length = 410 Score = 64.8 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 58/149 (38%), Gaps = 6/149 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRM 72 D + V AG+P+ A+ ++ Q+ + +R +++ GL+LS+S+ + Sbjct: 68 KDMALFSRQLSSLVDAGVPIVRALGLLTEQTRNPKLRKTLKQINIDVQEGLNLSDSMRKF 127 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + GG L + L LS++L D ++ ++++ A Sbjct: 128 PK-----VFDGLYVAMIQAGETGGVLDDVLNRLSKLLEDMSRLRNQMKSAMTYPMAVFVT 182 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + ++ + T G + G Sbjct: 183 AILVFLGMTIFIIPTFAGIFEDQGAELPG 211 Score = 40.1 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 14/133 (10%), Positives = 36/133 (27%), Gaps = 5/133 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 RAG+P+ A+ ++ + + + + + R PL Sbjct: 278 FCRTFGSLTRAGVPIMTALEIVRDTAGNQAIARSIDAARMEVQTGGMMSVALSRYRVFPL 337 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G L + ++ D K +E + G + Sbjct: 338 -----MALSMITIGEETGELDTMVNKVADFYEDEVEQAVKGLTSLLEPIMIVLVGGIVGS 392 Query: 139 CVSTLVYFTSPGY 151 + + + Sbjct: 393 ILLAMYLPMFSIF 405 >gi|309810746|ref|ZP_07704553.1| type II secretion system F domain protein [Dermacoccus sp. Ellin185] gi|308435283|gb|EFP59108.1| type II secretion system F domain protein [Dermacoccus sp. Ellin185] Length = 295 Score = 64.8 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 61/146 (41%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R A+ + +FP D++ +V AG A+ + P+ E R +E Sbjct: 140 LTRLAERREARMIVEFPAIADMLALAVAAGQGPLGALEHVTTLCRGPLAEELRTALEQAR 199 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G LS++++ + R + V+ F + V + G L++ L ++ R+ + + Sbjct: 200 AGTPLSDALAGVARRTSVVSVARFVEGVIVALERGTPLADVLRAQAQDARESVRTELVEK 259 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146 A E A ++ + + Sbjct: 260 AGRKEVVMMAPVVFLVLPVTVLFAVY 285 >gi|117928527|ref|YP_873078.1| type II secretion system protein [Acidothermus cellulolyticus 11B] gi|117648990|gb|ABK53092.1| type II secretion system protein [Acidothermus cellulolyticus 11B] Length = 409 Score = 64.8 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 58/187 (31%), Gaps = 18/187 (9%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISR 71 + D + +GL + A+ ++ Q+ S ++ V G SLS ++S+ Sbjct: 65 MKDLAVMSRQFATMINSGLSLLRALTILREQTQSKALQKVLTEVRNDVETGSSLSAAMSK 124 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 R P + ++GG L L ++ +++KV++ Sbjct: 125 HPRAFPP-----LMVNMIRAGEVGGFLDSVLLEIAANYEAEVKLRSKVKSAMTYPVVVLC 179 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRG------------HMLLGVAAAFMLIGIMVM 179 I + T V L +LL V ++G + Sbjct: 180 ISLLAVLGMLTFVVPVFAKMFKQLGGKLPAPTQFLVTLSHSMKVLLPVLIVLAIVGGITW 239 Query: 180 RLMINFD 186 + + Sbjct: 240 SRIRRTE 246 Score = 42.4 bits (98), Expect = 0.026, Method: Composition-based stats. Identities = 13/134 (9%), Positives = 36/134 (26%), Gaps = 5/134 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + + +G+P+ A+ ++ + + V + + S+ S Sbjct: 270 ALARFARNLGTMMHSGVPILQALDIVADTTGNVV-----LARAIRDVQGSIRSGESLTAP 324 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + G L L +++ + +E A + G Sbjct: 325 LTSHPIFPPMVVQMMAVGEDTGALDTMLGKIAQFYDQEVEAMTESLTALIEPIMIALLGG 384 Query: 135 SLPFCVSTLVYFTS 148 + + L Sbjct: 385 IVGSMIVALYLPIF 398 >gi|295700365|ref|YP_003608258.1| type II secretion system F domain protein [Burkholderia sp. CCGE1002] gi|295439578|gb|ADG18747.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1002] Length = 322 Score = 64.8 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 68/165 (41%), Gaps = 4/165 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + R ++DFP+ALD++ V AGL + ++ + + S V SE ++ Sbjct: 156 LSRRTAARQRSLVEDFPDALDLLTVCVEAGLGLDASLMKVGEEIRLRSAVVASELELMLL 215 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S +++ ++++ FS ++ + G ++ +L LS LR R+ M+A Sbjct: 216 EMRSGFSKEKALRNFSLRTGVEDIDSFSAMLIQAERFGTSIGASLRVLSDTLRTRRRMRA 275 Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + +A + + P + L+ L+ G Sbjct: 276 EERAAKIALKLLFPLMFCIFPALLVVLMGPAMIHIYRDLLPSMAG 320 >gi|77459395|ref|YP_348902.1| general secretion pathway protein F [Pseudomonas fluorescens Pf0-1] gi|77383398|gb|ABA74911.1| general secretion pathway protein F [Pseudomonas fluorescens Pf0-1] Length = 403 Score = 64.8 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 24/168 (14%), Positives = 60/168 (35%), Gaps = 6/168 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 +D A + + A LP+ A++ V Q+ + V G+ L+E+++ Sbjct: 63 DNDLAWATRQLSSLLGASLPLEAALSATVEQAEKKHIAHTLSAVRADVRSGMRLAEALAA 122 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 R + + + G+L++ + L+ + +R N++ K+ + Sbjct: 123 RPR-----DFPEIYRALIAAGEESGDLAQVMERLADYIEERNNLRGKILTAFIYPGVVGL 177 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + + + V + D G L + A+ + + Sbjct: 178 VSIGIVIFLLSYVVPQVVSAFSQARQDLPGLTLAMLNASDFIRAWGWL 225 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 15/129 (11%), Positives = 33/129 (25%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ A+ S+ S + E ++ Sbjct: 272 FASTLAILGGAGVPLLRALEAARQTLSNDRLSLSV-----NEATAKVREGVNLAAALKVE 326 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L L ++ L +A +E + G + Sbjct: 327 NVFPPVLIHLIASGEKTGALPPMLERAAQTLSRDIERRAMGMTALLEPLMIVVMGGVVLV 386 Query: 139 CVSTLVYFT 147 V ++ Sbjct: 387 IVMAVLLPI 395 >gi|330444857|ref|ZP_08308512.1| general secretion pathway protein F [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489167|dbj|GAA03009.1| general secretion pathway protein F [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 408 Score = 64.8 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 58/167 (34%), Gaps = 11/167 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 ++ + V+A +P+ + + + Q+ +++ V G +L++S++ Sbjct: 67 TNELALITRQLATLVQASMPLEECLKAVAEQNEKPRLKNILLAVRSRVVEGYTLADSMAE 126 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + G+L L L+ +R+ M++K+Q + Sbjct: 127 FP-----HIFDQLFRAMVAAGEKSGHLDTILNRLADYTENRQQMRSKLQQAMIYPI---M 178 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + V+ L+ P ++ + G L + + V Sbjct: 179 LTLVAVSVVAFLLATVVPKIVDQFVQ--MGQQLPTITEVLLAASNFV 223 >gi|291438159|ref|ZP_06577549.1| predicted protein [Streptomyces ghanaensis ATCC 14672] gi|291341054|gb|EFE68010.1| predicted protein [Streptomyces ghanaensis ATCC 14672] Length = 324 Score = 64.8 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 2/162 (1%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + VRAG A+ V S + V+ G + E+++ + + + Sbjct: 158 LAGEVRAGRQPGAALLTAVRD-SGGLGDAQAAVLAAARFGGDVPEALAAAAQP-GAEGLR 215 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + V G L++ L L LR ++ +A ++A A+A+A ++ LP Sbjct: 216 GLAACWRVAVDQGAGLADGLDRLEAALRAERDRRADLRAQLAGARATAVMLAGLPAVGLA 275 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + +L++ P G L V +G+ ++ Sbjct: 276 LGAALGADPLRILLHTPSGLGCLAVGGVLEGLGLWWALRIMR 317 >gi|291543482|emb|CBL16591.1| Type II secretory pathway, component PulF [Ruminococcus sp. 18P13] Length = 396 Score = 64.4 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 24/189 (12%), Positives = 54/189 (28%), Gaps = 20/189 (10%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISR 71 + + + +GL + A+ ++ + +R + E G S S Sbjct: 57 TKELAFNCRQMAAMLTSGLTLVKALDILCREQEKEASKLIWRDIYENVQKGESFS----- 111 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M F + + G+L + + +S M +++ M Sbjct: 112 ASLEMHSGSFPQFLISMVAAGESSGSLDQIMQRMSDHYAKENKMHNTIKSAMMYPIILVI 171 Query: 132 IIGSLPFCVSTLVYFTS----------PGYMNVLINDPRG----HMLLGVAAAFMLIGIM 177 + ++ + T + T P V+++ +L + GI Sbjct: 172 LCVAVVIGLFTFIMPTFAGLFTNEEDMPALTRVMMSISNFLRGYWYILIGFVLIAVFGIR 231 Query: 178 VMRLMINFD 186 M N Sbjct: 232 YAMKMPNVR 240 >gi|225076115|ref|ZP_03719314.1| hypothetical protein NEIFLAOT_01147 [Neisseria flavescens NRL30031/H210] gi|224952559|gb|EEG33768.1| hypothetical protein NEIFLAOT_01147 [Neisseria flavescens NRL30031/H210] Length = 177 Score = 64.4 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 45/124 (36%), Gaps = 7/124 (5%) Query: 1 MKHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIET 58 + + R + +D + ++AGLP+ A ++ S+ + ++ Sbjct: 59 ISKVKTARKRRITQEDITVFTRQLATMMKAGLPLMQAFEIVARGHSNPSMTEMLTQIRSD 118 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G +L +S S+ + F + + GG L L L+ + +K K Sbjct: 119 VEQGSALGKSFSKYPK-----YFDRFYCNLVSAGESGGVLESLLDKLAVYKEKTQAIKKK 173 Query: 119 VQAL 122 ++ Sbjct: 174 LKPH 177 >gi|53719426|ref|YP_108412.1| putative fimbriae-related membrane protein [Burkholderia pseudomallei K96243] gi|76810064|ref|YP_333441.1| putative fimbriae-related membrane protein [Burkholderia pseudomallei 1710b] gi|121598751|ref|YP_993001.1| type II secretion system protein F [Burkholderia mallei SAVP1] gi|124385777|ref|YP_001026333.1| type II secretion system protein F [Burkholderia mallei NCTC 10229] gi|126450336|ref|YP_001080393.1| type II secretion system protein F [Burkholderia mallei NCTC 10247] gi|134282407|ref|ZP_01769112.1| bacterial type II secretion system protein [Burkholderia pseudomallei 305] gi|217421557|ref|ZP_03453061.1| bacterial type II secretion system protein [Burkholderia pseudomallei 576] gi|226196355|ref|ZP_03791937.1| bacterial type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|237812170|ref|YP_002896621.1| bacterial type II secretion system protein [Burkholderia pseudomallei MSHR346] gi|254177530|ref|ZP_04884185.1| type II secretion system protein [Burkholderia mallei ATCC 10399] gi|254188724|ref|ZP_04895235.1| bacterial type II secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|254259567|ref|ZP_04950621.1| bacterial type II secretion system protein [Burkholderia pseudomallei 1710a] gi|254297711|ref|ZP_04965164.1| bacterial type II secretion system protein [Burkholderia pseudomallei 406e] gi|254358538|ref|ZP_04974811.1| type II secretion system protein [Burkholderia mallei 2002721280] gi|52209840|emb|CAH35812.1| putative fimbriae-related membrane protein [Burkholderia pseudomallei K96243] gi|76579517|gb|ABA48992.1| putative fimbriae-related membrane protein [Burkholderia pseudomallei 1710b] gi|121227561|gb|ABM50079.1| bacterial type II secretion system protein F domain [Burkholderia mallei SAVP1] gi|126243206|gb|ABO06299.1| bacterial type II secretion system F domain protein [Burkholderia mallei NCTC 10247] gi|134246445|gb|EBA46534.1| bacterial type II secretion system protein [Burkholderia pseudomallei 305] gi|148027665|gb|EDK85686.1| type II secretion system protein [Burkholderia mallei 2002721280] gi|157807239|gb|EDO84409.1| bacterial type II secretion system protein [Burkholderia pseudomallei 406e] gi|157936403|gb|EDO92073.1| bacterial type II secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|160698569|gb|EDP88539.1| type II secretion system protein [Burkholderia mallei ATCC 10399] gi|217395299|gb|EEC35317.1| bacterial type II secretion system protein [Burkholderia pseudomallei 576] gi|225931572|gb|EEH27577.1| bacterial type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|237503370|gb|ACQ95688.1| bacterial type II secretion system protein [Burkholderia pseudomallei MSHR346] gi|254218256|gb|EET07640.1| bacterial type II secretion system protein [Burkholderia pseudomallei 1710a] Length = 314 Score = 64.4 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + ++ +R P+ALD++V AG ++ A+ + + P+ EF + Sbjct: 154 LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + +++ M + L + T + Q G ++++L LSR R + + Sbjct: 214 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 273 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K + ++ + V+ + Sbjct: 274 EEKAAKLAPKMTLPMMLFVMPTVALI 299 >gi|152990756|ref|YP_001356478.1| general secretory pathway protein F [Nitratiruptor sp. SB155-2] gi|151422617|dbj|BAF70121.1| general secretory pathway protein F [Nitratiruptor sp. SB155-2] Length = 412 Score = 64.4 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 71/193 (36%), Gaps = 19/193 (9%) Query: 2 KHLIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59 + L+++R K + A+ + AG+ + DA+ + Q++D ++ F V Sbjct: 58 RFLMEQRKGKINREGLIAAIRQLAVMTNAGISLYDALMEVATQTNDAKLKQIFLDVANGI 117 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + G+S SE++ + E+ ++ + G+++ AL L+ IL K Sbjct: 118 NSGISFSEALKQ-----YQNELGSLVITMATLGEKTGDMAHALFTLASILEQINENIKKF 172 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLL----------GV 167 + + V + V + + +LL Sbjct: 173 KKAVRYPIIVLSAMAIAFVIVISYVVPKFKSIFDKFHAELPLPTKILLSLEHLFNTYGLY 232 Query: 168 AAAFMLIGIMVMR 180 A + IGI+++R Sbjct: 233 VAGGLFIGILLIR 245 >gi|310765051|gb|ADP10001.1| type IV pilin biogenesis protein [Erwinia sp. Ejp617] Length = 399 Score = 64.4 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 17/144 (11%), Positives = 43/144 (29%), Gaps = 6/144 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 L + ++AG+P+ + ++ + ++ + + G S+++ P Sbjct: 64 FLRQLATLLKAGMPLPACLQLLADGHPEAGWQALLTHLHQRISAGEPFSQALREWPDIFP 123 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + +L G L E L+ ++ ++ KVQ + + Sbjct: 124 PLIP-----ALVHIGELTGELDECCLQLAIQQEKQQLLRQKVQKALRYPLFIMAVALLVS 178 Query: 138 FCVSTLVYFTSPGYMNVLINDPRG 161 + V G Sbjct: 179 IGMLVFVLPEFVAIYRSFNAPLPG 202 Score = 40.9 bits (94), Expect = 0.079, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 7/135 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLSESISRMV 73 + + RAGL + ++ I S + E ++ G L +++ Sbjct: 264 QLSQIFTTLSLTQRAGLTLLHSLQAIEQTLSPLLWREAVSQLQQHIAAGYPLHQALKSHP 323 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + P + + G+L L L+ + + A A ++E I Sbjct: 324 LFTP------LCYQLVKVGEESGSLDTLLVRLAVWHEQQTHQLADTLAAALEPLMMIVIG 377 Query: 134 GSLPFCVSTLVYFTS 148 G + V + Sbjct: 378 GIVGTLVVAMYLPVF 392 >gi|302520916|ref|ZP_07273258.1| integral membrane protein [Streptomyces sp. SPB78] gi|302429811|gb|EFL01627.1| integral membrane protein [Streptomyces sp. SPB78] Length = 255 Score = 64.4 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 62/166 (37%), Gaps = 1/166 (0%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 ++ VRAG ++A+A V + + ++ G + ++ + R Sbjct: 81 LCGLLAGEVRAGSGPAEALAHAVN-ACGELGPARADILAAARFGGDVPAALRQASRVPGA 139 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + V G L+ L L R L ++ +A + A A+A+A ++ +LP Sbjct: 140 EGLVGLAACWHVALDRGAGLAVGLERLERALLADRDQRADLLAQLSGARATAGLLAALPL 199 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + VL G + L + + G+ ++ Sbjct: 200 LGLLLGSAVGAAPLRVLFGSAPGFVCLVIGSGLEAAGVWWCLWLVR 245 >gi|313497009|gb|ADR58375.1| PilC [Pseudomonas putida BIRD-1] Length = 422 Score = 64.4 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 53/171 (30%), Gaps = 11/171 (6%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSL 65 KR K D + ++AG+P+ A V+ + R+ + GL L Sbjct: 78 KRREK--ADPAGFSRQLATLLKAGVPLLQAFEVMGRSGCDAAQAALLERLKQDVASGLGL 135 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++ R + + G L L L+ +L R+ + KV+ + Sbjct: 136 ADALQRHPA-----WFDALYCNLVRVGEQSGTLDRQLEQLAGMLEQRRVLHKKVRKAMIY 190 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + L+ P + ++ + G+ Sbjct: 191 PLLLLLTGLG---VSAILLLEVIPKFESMFSGMGAALPAFTQWVINLSTGL 238 Score = 38.9 bits (89), Expect = 0.28, Method: Composition-based stats. Identities = 15/137 (10%), Positives = 42/137 (30%), Gaps = 7/137 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISR 71 + S AG+P+ DA+ + + + R+ + G L+++++ Sbjct: 286 QAALARFARSLATSYGAGVPLLDALGTVARVTGGDLHEQAVLRLRQGMANGQGLNQAMAG 345 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P ++ + G L + L + ++ + +E Sbjct: 346 EPLFPP------LLVQLTAIGESSGTLDQMLEKAASHYEEQVSQALDQLTSLLEPAIVLI 399 Query: 132 IIGSLPFCVSTLVYFTS 148 + + V + Sbjct: 400 LGLLVGGLVVAMYLPIF 416 >gi|184200111|ref|YP_001854318.1| hypothetical protein KRH_04650 [Kocuria rhizophila DC2201] gi|183580341|dbj|BAG28812.1| hypothetical protein [Kocuria rhizophila DC2201] Length = 254 Score = 64.4 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 25/194 (12%), Positives = 67/194 (34%), Gaps = 17/194 (8%) Query: 7 KRTAKFLDD--FPNALDIIVRSVRAGLPVSDAVAVI----VGQSSDPVRSEFRRVIETQH 60 +R + + + A+ + + AG + A I ++ + + V Sbjct: 52 RRRDRATEAMRWVTAVRRLAALLHAGRAPATVFAEITPGTADPTARWITRVCQEVHAAAL 111 Query: 61 LGLSLSESISRMVRYM-----------PLQEVSFFSTVISVQSQLGGNLSEALANLSRIL 109 +G+ +S ++ + R + + + + G +L+ L+ ++ L Sbjct: 112 VGIPVSTTLGQFARRPAAVGDRVLGATARSVCAQLAACWEISERSGSSLARTLSGVAESL 171 Query: 110 RDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 R + +A ++ + + + LP L ++ L+ G + L A Sbjct: 172 ESRLDAQAARESALAGPRVTVRTLSWLPVLALGLGVLMGTDPVSTLLTTVWGRIALAAGA 231 Query: 170 AFMLIGIMVMRLMI 183 + G + R ++ Sbjct: 232 GLSIAGRLWTRSLM 245 >gi|209525547|ref|ZP_03274086.1| type II secretion system protein [Arthrospira maxima CS-328] gi|209494046|gb|EDZ94362.1| type II secretion system protein [Arthrospira maxima CS-328] Length = 377 Score = 64.4 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 21/164 (12%), Positives = 57/164 (34%), Gaps = 6/164 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 D AG+ ++ ++V+ Q + ++ + G LS S+ + Sbjct: 35 KDLAIFARQFAAMFNAGISMARCLSVLGEQCENAKLKRAINTLRADVEEGEELSSSMRKF 94 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + GG L E L L+ ++ ++++++ + K +I Sbjct: 95 PD-----VFDQLFVSMVSAGETGGVLDETLERLAVMMEKNHKTQSEIKSATSYPKTVLFI 149 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 ++ F ++T + T G + + ++ + + Sbjct: 150 AIAVFFGMATFLLPTFSGIFEQIGVELPLFTVMMLKISDFCTTW 193 >gi|17229934|ref|NP_486482.1| pilin biogenesis protein [Nostoc sp. PCC 7120] gi|17131534|dbj|BAB74141.1| pilin biogenesis protein [Nostoc sp. PCC 7120] Length = 407 Score = 64.4 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 19/172 (11%), Positives = 60/172 (34%), Gaps = 9/172 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + V AG+ + + V+ Q ++ ++ + G++LS+++ + Sbjct: 72 FSRQLATLVNAGVAIVRGLGVLGDQCTNAKLKQALNDISNDVQSGVNLSDAMRKHPGCFD 131 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++GG L E L L+++L D ++ ++++ + + Sbjct: 132 G-----LYVSMIQAGEVGGVLDEVLNRLAKLLEDMARLQNQIKSALAYPVVVGILATGIF 186 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVA---AAFMLIGIMVMRLMINFD 186 ++ + L + + L ++++ ++ F Sbjct: 187 VGMTVFLIPIFAKIFVELGTELPPLTAFLMTCSQVLRSLWSLVIIAGIVGFK 238 >gi|333025387|ref|ZP_08453451.1| hypothetical protein STTU_2891 [Streptomyces sp. Tu6071] gi|332745239|gb|EGJ75680.1| hypothetical protein STTU_2891 [Streptomyces sp. Tu6071] Length = 275 Score = 64.4 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 62/166 (37%), Gaps = 1/166 (0%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 ++ VRAG ++A+A V + + ++ G + ++ + R Sbjct: 101 LCGLLAGEVRAGSGPAEALAHTVN-ACGELGPARADILAAARFGGDVPAALRQAARVPGA 159 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + V G L+ L L R L ++ +A + A A+A+A ++ +LP Sbjct: 160 EGLVGLAACWRVALDRGAGLAVGLERLERALLADRDQRADLLAQLSGARATAGLLAALPL 219 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + VL G + L + + G+ ++ Sbjct: 220 LGLLLGSAVGAAPLRVLFGSAPGFVCLVIGSGLEAAGVWWCLWLVR 265 >gi|332527682|ref|ZP_08403725.1| general secretion pathway protein F [Rubrivivax benzoatilyticus JA2] gi|332112082|gb|EGJ12058.1| general secretion pathway protein F [Rubrivivax benzoatilyticus JA2] Length = 405 Score = 64.4 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 11/164 (6%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMVR 74 + V +GLP+ A+ + ++ D + E + + G + +++ R Sbjct: 68 LAVWTRQLAGLVGSGLPLERALTALADEAEDQRQRELLVHLRSEVNAGSPFARALATAPR 127 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 E + + G L L L++ L DR+ ++AK+ + + Sbjct: 128 -----EFDEVYRAVVAAGEQSGALGAVLERLAQDLEDRQALRAKLLGAMLYPA---IVSL 179 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 V+ LV + P V N + LL V M I V Sbjct: 180 IALVIVTFLVTYVVPQVATVFSNTKQSLPLLTV--VMMAISDFV 221 Score = 33.9 bits (76), Expect = 9.2, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 37/130 (28%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ + + G L+ +++ R+ Sbjct: 274 FAGTLAMLAGAGVPILKALQAAAETLGNRAMRADALDALVQVREGAPLASALAAKKRFPG 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L L + L +A A +E + G + Sbjct: 334 ------LLAMFARLGEQTGQLPVMLQRAATQLGAEVQRRAMAVATVLEPLLIVAMGGVVM 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 MIVLAVMLPI 397 >gi|262170338|ref|ZP_06038016.1| general secretion pathway protein F [Vibrio mimicus MB-451] gi|261891414|gb|EEY37400.1| general secretion pathway protein F [Vibrio mimicus MB-451] Length = 406 Score = 64.4 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 57/172 (33%), Gaps = 8/172 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + V++G+P+ + + + QS +R+ V G +LS+S+ Sbjct: 67 DLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G+L L L+ +R+ M++K+Q + Sbjct: 127 -----HVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183 + + V G + LL + GI ++ ++ Sbjct: 182 VGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQNWGIWLLIGLM 233 >gi|296130402|ref|YP_003637652.1| Type II secretion system F domain protein [Cellulomonas flavigena DSM 20109] gi|296022217|gb|ADG75453.1| Type II secretion system F domain protein [Cellulomonas flavigena DSM 20109] Length = 299 Score = 64.4 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 57/149 (38%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D P+ LD++ +V AG+ A+A + P+ E + G S+ ++ + Sbjct: 149 DRDLPDFLDVLAVTVMAGVNFRAALARVSQHFEGPLSEEIDLTLHQIANGASVRQAFQDL 208 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R + V F + + +LG L+E+L ++ +R + + A + + Sbjct: 209 RRRSASESVGQFVSALLQSQELGAPLAESLQRIAEDMRKASGQRQRQAAAKASPRVTLVT 268 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 L ++ ++V + G Sbjct: 269 SMVLVPGALVFIFVGMWLGLDVDLGTIFG 297 >gi|254251014|ref|ZP_04944332.1| Type II secretory pathway component PulF [Burkholderia dolosa AUO158] gi|124893623|gb|EAY67503.1| Type II secretory pathway component PulF [Burkholderia dolosa AUO158] Length = 405 Score = 64.4 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 59/184 (32%), Gaps = 12/184 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + + +R + + AGLP+ +A+ V+ QS D +R + Sbjct: 59 LGRKLSQREQAI------LTRQLASLLIAGLPLDEALGVLTEQSERDYIRELMASIRAEV 112 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SL+ ++++ R + + + G L L+ L+ + R +K K+ Sbjct: 113 LGGHSLANALTQHPR-----DFPEIYRALVSAGEHTGKLGIVLSRLADYIEQRNALKQKI 167 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 I + + + V ++ +A + + Sbjct: 168 LLAFTYPAIVTVIAFGIVTFLLSYVVPQVVNVFASTKQQLPLLTIVMMALSGFVRHWWWA 227 Query: 180 RLMI 183 L+ Sbjct: 228 LLIA 231 Score = 34.7 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ S+ I G +LS +++ + + P Sbjct: 274 FASTLGILTAAGVPILRALQAAGETLSNRAMRANIDDAIVRVREGSALSRALNNVKTFPP 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+++ L + + +E + G + Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAADGEARELERRTMFLTSLLEPLLILAMGGIVL 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 VIVLAVMLPI 397 >gi|332995714|gb|AEF05769.1| general secretion pathway protein F [Alteromonas sp. SN2] Length = 408 Score = 64.4 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 23/170 (13%), Positives = 58/170 (34%), Gaps = 6/170 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + V + LPV +A+ + Q ++ V G L++++S Sbjct: 69 DLALLTRQMATLVESALPVEEALLAVAEQCEKPRQKNMMMAVRSKVVEGHGLADALSEFP 128 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G+L L L+ R+ ++++ + + Sbjct: 129 -----SVFDDLYRAMVAAGEKSGHLDTVLNRLADYTERRQQTRSQITQALIYPSLMLFFA 183 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + T+V G + + D G + ++ + L ++ L++ Sbjct: 184 FGIVMLLLTVVVPKIVGQFDHMGQDLPGITQVLISVSTWLQNYGLILLVV 233 >gi|154486514|ref|ZP_02027921.1| hypothetical protein BIFADO_00329 [Bifidobacterium adolescentis L2-32] gi|154084377|gb|EDN83422.1| hypothetical protein BIFADO_00329 [Bifidobacterium adolescentis L2-32] Length = 260 Score = 64.4 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 5/159 (3%) Query: 26 SVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 SVR+G + A + Q + E R + S + Q + Sbjct: 102 SVRSGATLVQAFEEL--QGAPFAVPELTRFRIDMAV---RSRCSLQEQHKHVDQLGAELH 156 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 ++ QLG +S L ++ L+ R+ + +A+ ++ +LP L Sbjct: 157 AACTLSLQLGCEMSRCLEAVAASLKRRRLLDDLRANAFAMPQATVKLLMALPLLTVMLGE 216 Query: 146 FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + L+ D +G M LG A +G +R ++ Sbjct: 217 CMGAHPLRFLVEDVKGWMCLGFAGCCYAVGWYWIRRLMR 255 >gi|117617658|ref|YP_855996.1| Flp pilus assembly protein TadC [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559065|gb|ABK36013.1| Flp pilus assembly protein TadC [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 294 Score = 64.4 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 63/149 (42%), Gaps = 3/149 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 ++ +K A P+A+D++V SV AGL + A+ + G + +F R Sbjct: 135 LQWRARKVKAAQQKVVPDAIDLLVISVEAGLALDRALLRVGHYLGALEPGLARQFLRTHA 194 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + ++R+ L E+ + + + Q G L+E + +S+ R + + Sbjct: 195 EIQMRGDQAGCLARLAWRTGLPELDRLANTLQMAQQYGSPLAETMRTISQEARQMRRLAL 254 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF 146 + QA S+ K + + + + L+ Sbjct: 255 EEQAGSLPGKITLIQMALIMLPMLVLIIA 283 >gi|229589908|ref|YP_002872027.1| putative type II secretion system protein F [Pseudomonas fluorescens SBW25] gi|229361774|emb|CAY48656.1| putative type II secretion system protein F [Pseudomonas fluorescens SBW25] Length = 403 Score = 64.4 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 24/168 (14%), Positives = 60/168 (35%), Gaps = 6/168 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 +D A + + A LP+ A++ V Q+ + V G+ L+E+++ Sbjct: 63 DNDLAWATRQLASLLGASLPLEAALSATVEQAEKKHIAQTLAGVRADVRGGMRLAEALAA 122 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 R + + + G+L++ + L+ + +R N++ K+ + Sbjct: 123 RPR-----DFPSIYRALIAAGEESGDLAQVMERLADYIEERNNLRGKILTAFIYPGVVGL 177 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + + + V + D G L + A+ + + Sbjct: 178 VSIGIVIFLLSYVVPQVVSAFSQARQDLPGLTLAMLNASDFIRAWGWL 225 Score = 37.8 bits (86), Expect = 0.71, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 38/130 (29%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ S+ + G++L+ +++ Sbjct: 272 FASTLAILGGAGVPLLRALEAARQTLSNDRLSQCVNDATAKVREGVNLAPALAV------ 325 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G+L L ++ L +A +E + + Sbjct: 326 EKVFPPVLIHLIASGEKTGSLPPMLERAAQTLSRDIERRAMGMTALLEPLMIVVMGAVVL 385 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 386 VIVMAVLLPI 395 >gi|294788003|ref|ZP_06753247.1| type IV pilin biogenesis protein PilC [Simonsiella muelleri ATCC 29453] gi|294484296|gb|EFG31979.1| type IV pilin biogenesis protein PilC [Simonsiella muelleri ATCC 29453] Length = 424 Score = 64.4 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 73/200 (36%), Gaps = 23/200 (11%) Query: 2 KHLIKKRTAKFLD---------------DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSS 45 + +++R K L D + ++AGLP+ A ++ S+ Sbjct: 57 RQKLQRRQVKVLQIVKMKKAKNKKITSADIAVFTRQLCTMMKAGLPLMQAFDIVAKGHSN 116 Query: 46 DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANL 105 + + V G S++++ S+ + S F + + GG L L L Sbjct: 117 ASMTNLLMSVRADVEQGTSMADAFSKHPK-----YFSKFYCNLVGAGEAGGVLDSLLDKL 171 Query: 106 SRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN--DPRGHM 163 + + + +K KV++ A + L + V + + P Sbjct: 172 ATYMEKTEAIKKKVKSALTYPIAILVVAVVLVIVMMMFVLPEFKKVYDSMGAKLPPLTEF 231 Query: 164 LLGVAAAFMLIGIMVMRLMI 183 ++G++ AF+ G +++ ++ Sbjct: 232 MMGISNAFVAHGALIIIGLV 251 >gi|284028546|ref|YP_003378477.1| type II secretion system protein [Kribbella flavida DSM 17836] gi|283807839|gb|ADB29678.1| type II secretion system protein [Kribbella flavida DSM 17836] Length = 189 Score = 64.4 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 63/157 (40%), Gaps = 4/157 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++KR A+ D P A+D++ +RAG P A+A + P+ V LG Sbjct: 34 AVRKRNARISADLPLAVDLLAACLRAGRPPQAAIATVGHALDGPLAGLLAEVERRLDLGA 93 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++ S + + F+ + G L++ L + S LR + A+ Q + Sbjct: 94 DAIDAWSVLRAE---PTCATFARATQRALRSGAPLAKTLESQSADLRQSRRWTAEQQTRA 150 Query: 124 MEAKASAWI-IGSLPFCVSTLVYFTSPGYMNVLINDP 159 +E ++ + + LP V V T ++ + Sbjct: 151 VETRSVLPLGLCFLPAFVLLGVVPTIAATFTDILTEL 187 >gi|186474108|ref|YP_001861450.1| type II secretion system protein [Burkholderia phymatum STM815] gi|184196440|gb|ACC74404.1| type II secretion system protein [Burkholderia phymatum STM815] Length = 323 Score = 64.4 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 71/166 (42%), Gaps = 4/166 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + L++ R +D P+ALD++ V AGL + A+ + + S ++ E V+ Sbjct: 157 LSRLVEARQRTIFEDLPDALDLMTVCVEAGLGLDAAMQRVAEEIGVKSRALKDELELVLL 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +++ + ++++ ++++ + G ++ ++L LR R+ ++A Sbjct: 217 ELRAGSARDKALRNLALRTGVEDIDTLTSMLIQADRFGTSVGDSLRVFIDALRTRRRLRA 276 Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162 + QA + + P + L+ + + L+ G Sbjct: 277 EEQAAKIALKLLFPLMFCIFPTLIVVLIGPAAMRVAHQLLPTMSGM 322 >gi|78049223|ref|YP_365398.1| type II secretory pathway component [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037653|emb|CAJ25398.1| type II secretory pathway component [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 405 Score = 64.4 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 19/183 (10%), Positives = 56/183 (30%), Gaps = 5/183 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ L++K+ + + AG P+ A+++++ E R + Sbjct: 54 LRMLLRKKPFD-NAALVQFTQQLATLIGAGQPLDRALSILMD----LPEDEKSRRVIGDV 108 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + S + + GG++ + L L+ L + ++ KV Sbjct: 109 RDTVRGGAPLSSALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKVI 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + ++G + V L ++ ++ ++ Sbjct: 169 NALIYPAILLAVVGCALLFLLGYVVPQFAQMYESLDVTLPWFTQAVLSVGLLVRDWWIVL 228 Query: 181 LMI 183 +++ Sbjct: 229 IVV 231 >gi|320095978|ref|ZP_08027592.1| hypothetical protein HMPREF9005_2204 [Actinomyces sp. oral taxon 178 str. F0338] gi|319977085|gb|EFW08814.1| hypothetical protein HMPREF9005_2204 [Actinomyces sp. oral taxon 178 str. F0338] Length = 178 Score = 64.4 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 1/147 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + R + P+A +++ +V AG V A+ + S + E R + Sbjct: 23 LTARADSRQRRVEAAVPDASELLALAVGAGESVPAALDRVASLSHSDLGDELARAVADIR 82 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG +++ + +S +S G L+ L + +R +R+ + + Sbjct: 83 LGAPSVRALTDLAARNDSPALSRLCQTLSTAIGRGSPLAAVLHDQARDIREASRQRLMEE 142 Query: 121 ALSME-AKASAWIIGSLPFCVSTLVYF 146 E A + LP V +Y Sbjct: 143 GGKREIAMLFPVVFLILPVTVLFALYP 169 >gi|302870514|ref|YP_003839151.1| Type II secretion system F domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|302573373|gb|ADL49575.1| Type II secretion system F domain [Micromonospora aurantiaca ATCC 27029] Length = 282 Score = 64.4 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 21/179 (11%), Positives = 61/179 (34%), Gaps = 2/179 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R ++ +++ ++ + + A+ + P+R + + + G L + Sbjct: 89 RAIARIEAIATWAELLRDTLSSAAGLEQAITATAPVTPQPIRPQVQALAGAVRGGARLPD 148 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + ++ + G LS+ L +L+ R+ ++ +V Sbjct: 149 ALRAFAADLADPTADLVVRALTQAAGYHGGQLSQCLTSLAATARELAGIRMRVATKRAAT 208 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + +A +I + + + G++ G ++L V A G + Sbjct: 209 RTAARVITGTSVAMVAGLILLNRGFLAP-YRSVTGQLVLLVVGAVFAGGFWWLARASRV 266 >gi|309389115|gb|ADO76995.1| Type II secretion system F domain protein [Halanaerobium praevalens DSM 2228] Length = 414 Score = 64.4 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 59/172 (34%), Gaps = 6/172 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMV 73 + N + + AG+P+ ++ +I QS+ E +++ G +LS ++ Sbjct: 77 ELANFAQRLSVLIAAGIPLVRSLTIIKNQSNIKHEKEMLTQLLAKVEAGETLSSALEEQP 136 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 +Y P + + GG L E LA L R+R + +V++ + Sbjct: 137 KYFPK-----LFVHLIRAGETGGVLDEVLAELVDYYRNRDKINKEVKSALYYPITIVLVA 191 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 F + V + + + + + + L++ Sbjct: 192 IVAVFILMGFVLPNILDMLTGFGGQIPLPTKILIFISNFISAYWWLILIVLI 243 >gi|162454530|ref|YP_001616897.1| hypothetical protein sce6250 [Sorangium cellulosum 'So ce 56'] gi|161165112|emb|CAN96417.1| pulF [Sorangium cellulosum 'So ce 56'] Length = 405 Score = 64.4 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 20/143 (13%), Positives = 48/143 (33%), Gaps = 6/143 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRM 72 D + + AGLP+ + ++ Q + + + + T G + S+++ R Sbjct: 62 KDLVKFIRQFATMIDAGLPLVQCLEILSNQEPNKIFQAALKDIKNTVEQGATFSDALRRH 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + ++GG L L L+ + R + +V+ A I Sbjct: 122 PKI-----FDDLFVNLVQAGEVGGILDSILNRLAIYIEKRVKLARQVRGALAYPIAVIVI 176 Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155 + + + + V + Sbjct: 177 MVVVMVVLMSFVIPSFETMFAEF 199 Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 13/131 (9%), Positives = 39/131 (29%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP- 77 + + +G+P+ DA+ ++ + + V E + M + Sbjct: 272 FSRTLGTLLGSGVPILDALDIVAKTAGNVVVEEGLMYSRQKISEG------KNMAEPLGE 325 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 +Q + + G L L ++ + ++ +E + G + Sbjct: 326 MQVFPGMVVQMVAVGEQTGALDTMLNKIADFYEEEVDVAVAALTSLLEPLLMVIVGGMVG 385 Query: 138 FCVSTLVYFTS 148 + ++ Sbjct: 386 IVLISMYLPIF 396 >gi|299529575|ref|ZP_07043012.1| general secretion pathway protein F [Comamonas testosteroni S44] gi|298722438|gb|EFI63358.1| general secretion pathway protein F [Comamonas testosteroni S44] Length = 407 Score = 64.4 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 55/159 (34%), Gaps = 9/159 (5%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74 + V +GLP+ A+A + ++ D + + G S + ++ + R Sbjct: 70 LAVWTRQLSGLVSSGLPIERALAALSEEAEDERQHQLVAALRAEVNAGSSFARALEQHPR 129 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 E S + + G+L L NL+ L R+ +++K+ S+ + Sbjct: 130 -----EFSDIFCAVIGAGESSGSLGPVLENLADDLEARQALQSKLIGASLYPA---IVTL 181 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 V LV + P V R L V + Sbjct: 182 VAIVIVIFLVSYVVPQVAGVFAGTKRALPFLTVVMLGIS 220 Score = 36.3 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 15/129 (11%), Positives = 33/129 (25%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ A+ ++ R L L + Sbjct: 276 FAGTLAMLAGAGVPILKALQAAAETLNNR----ALRADAMDALVLVREGAPLASALAQKK 331 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + + G L L + L +A A +E + + Sbjct: 332 R-FPGLVAMFARLGEQTGQLPLMLQRAATQLSTEVQRRAMHLATILEPLLIVVMGLVVML 390 Query: 139 CVSTLVYFT 147 V ++ Sbjct: 391 IVLAVLMPI 399 >gi|157959976|ref|YP_001500010.1| general secretion pathway protein F [Shewanella pealeana ATCC 700345] gi|157844976|gb|ABV85475.1| general secretion pathway protein F [Shewanella pealeana ATCC 700345] Length = 407 Score = 64.4 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 62/174 (35%), Gaps = 8/174 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 + I V AGLPV +A+ + Q D + S V G SL++S++ Sbjct: 66 TAELALITRQIATLVAAGLPVEEALKAVGQQCEKDRLASMVMAVRSRVVEGYSLADSMAE 125 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + G+L L L+ R+ +K+K+ + Sbjct: 126 FP-----HIFDELYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKMTQAMIYPIVLTV 180 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML--IGIMVMRLMI 183 + + + V G + + L +A++ + G++V+ +++ Sbjct: 181 VAIGVIAILLAAVVPQVVGQFEHMGQELPWTTELLIASSDFIRDYGLIVLAVIV 234 >gi|167911026|ref|ZP_02498117.1| bacterial type II secretion system protein F domain [Burkholderia pseudomallei 112] Length = 264 Score = 64.4 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + ++ +R P+ALD++V AG ++ A+ + + P+ EF + Sbjct: 104 LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 163 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + +++ M + L + T + Q G ++++L LSR R + + Sbjct: 164 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 223 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K + ++ + V+ + Sbjct: 224 EEKAAKLAPKMTLPMMLFVMPTVALI 249 >gi|145299824|ref|YP_001142665.1| flp pilus assembly protein FlpH [Aeromonas salmonicida subsp. salmonicida A449] gi|88866591|gb|ABD57359.1| FlpH [Aeromonas salmonicida subsp. salmonicida A449] gi|142852596|gb|ABO90917.1| flp pilus assembly protein FlpH [Aeromonas salmonicida subsp. salmonicida A449] Length = 294 Score = 64.4 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 63/149 (42%), Gaps = 3/149 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 ++ +K + P+A+D++V SV AGL + A+ + G + +F R Sbjct: 135 LQWRARKVKSAQQKVVPDAIDLLVISVEAGLALDRALLRVGHYLGALEPGLARQFLRTHA 194 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + ++R+ L E+ + + + Q G L+E + +S+ R + + Sbjct: 195 EIQMRGDQASCLARLAWRTGLPELDRLANTLQMAQQYGSPLAETMRTISQEARQMRRLAL 254 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF 146 + QA S+ K + + + + L+ Sbjct: 255 EEQAGSLPGKITLIQMALIMLPMLVLIIA 283 >gi|125973852|ref|YP_001037762.1| type II secretion system protein [Clostridium thermocellum ATCC 27405] gi|125714077|gb|ABN52569.1| type II secretion system protein [Clostridium thermocellum ATCC 27405] Length = 289 Score = 64.4 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 52/158 (32%), Gaps = 3/158 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIET 58 + + +R DFP+ L+ ++ V AG+ VS A V S + E R V+ Sbjct: 132 LSGKVNRRRLSIQLDFPDFLNKVILLVNAGMTVSRAWEKSVTDSEKDTVLYQELRTVLAD 191 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANL-SRILRDRKNMKA 117 G S + + + E++ F + + G ++ L + + + A Sbjct: 192 IRGGKSETSAFEDFANRCRIPEITKFVSALLQNLNKGNAEMVSILRLQAAECWEMRKHAA 251 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 K K ++ + + + Sbjct: 252 KRLGEEASTKMLFPMMLMFIAVILIVATPAVLTLTGSM 289 >gi|288559781|ref|YP_003423267.1| type II secretion system protein F GspF1 [Methanobrevibacter ruminantium M1] gi|288542491|gb|ADC46375.1| type II secretion system protein F GspF1 [Methanobrevibacter ruminantium M1] Length = 201 Score = 64.4 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 63/166 (37%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 + P AL + +RAG + DA+ IV + EF RV+E G + + Sbjct: 25 ISKELPYALRQLSTELRAGKSLFDALDSIVDSDYGVLSREFSRVLEEIKYGETSENAFLN 84 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + + +S I ++G NLS +L ++ + MK K + + A + Sbjct: 85 LEKRVNSKALSRVIYEILASLRIGSNLSHSLNIIAEDVNFDMRMKLKEYSEKLNAFIMIY 144 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++ V L + + I +L M+I + Sbjct: 145 TFLAILAPVIILTMLLAASVVIGDIVPSSLLFILYGLFFPMIIVFL 190 >gi|238786737|ref|ZP_04630538.1| Type II secretion system protein [Yersinia frederiksenii ATCC 33641] gi|238725105|gb|EEQ16744.1| Type II secretion system protein [Yersinia frederiksenii ATCC 33641] Length = 365 Score = 64.4 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 55/162 (33%), Gaps = 9/162 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + + ++AGLP+ +++ ++ + P + + + + G SLSE I+R Sbjct: 25 EHLLTVTRQLATLLQAGLPLVNSLQLLAKEMDTLPWQCLLQEISQQVSQGQSLSEVIARY 84 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P + + ++ GNL + L ++ ++ KV I Sbjct: 85 PNTFP-----RLYSPVIAMGEMTGNLEQCCVQLVHHQERQQKLQKKVVKALKYPIFVCVI 139 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 ++ + +V + P +L M Sbjct: 140 ALTVSILMLVMVLPEFAKIYQS-FDTP--LPVLTATLLLMSA 178 >gi|225572862|ref|ZP_03781617.1| hypothetical protein RUMHYD_01053 [Blautia hydrogenotrophica DSM 10507] gi|225039788|gb|EEG50034.1| hypothetical protein RUMHYD_01053 [Blautia hydrogenotrophica DSM 10507] Length = 337 Score = 64.4 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 7/156 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRVIET 58 KKR + + D+P + ++AG+ V A I P E RR Sbjct: 181 RKKREEELIMDYPGLVTKFTLLIQAGMSVRGAFQKISEDCETKTKDRRPGYEEVRRTCIE 240 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQL-GGNLSEALANLSRILRDRKNMKA 117 G+S E+ + + FST++ + NL + L S + + +A Sbjct: 241 MDSGVSQKEAYQNFGQRCAQAKYKTFSTLLVQNLRSGNRNLVDMLERESTEAWEERKRRA 300 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153 ++ + K +I L ++ L+ + + Sbjct: 301 RIHGETAATKLLVPMILMLGVVLALLMIPACLSFYS 336 >gi|148651967|ref|YP_001279060.1| type II secretion system protein [Psychrobacter sp. PRwf-1] gi|148571051|gb|ABQ93110.1| type II secretion system protein [Psychrobacter sp. PRwf-1] Length = 410 Score = 64.4 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 60/181 (33%), Gaps = 7/181 (3%) Query: 7 KRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLS 64 +R K D + + +AG+P+ A +I ++ RV + G+S Sbjct: 62 RRQKKITALDISLFVRQLATMTKAGVPIVQAFELIAQALDKPSMKQLVLRVKQQLETGMS 121 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +S+ + + ++ G L L ++ + + +K K++ Sbjct: 122 LEDSLRAHPKQ-----FDDLFCALVSAAEHSGTLDTLLERIADYKENNELLKIKLKKAIK 176 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A + + + V + + + V + ++ + + L++ Sbjct: 177 YPLAVMLVAMIVSIILLLKVVPVFADLYDSMGSQLPAFTQFVVTLSHIMQKLWPIFLLLT 236 Query: 185 F 185 Sbjct: 237 I 237 Score = 37.8 bits (86), Expect = 0.64, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 36/130 (27%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + AG+P+ +A+ + + V + Q E R + P Sbjct: 279 FCRTLATTYAAGVPLLEALGATAAATDNHVFETATYQMRQQVAAGQRLERSMRSSQLFP- 337 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G+L + L ++ + ME I + Sbjct: 338 ----ALAVQMVSIGEESGSLEQMLNKVADYYEAQVTHAIDGLTDLMEPIIMVIIGLLVGG 393 Query: 139 CVSTLVYFTS 148 + + Sbjct: 394 LIVAMYLPIF 403 >gi|260462613|ref|ZP_05810819.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] gi|259031519|gb|EEW32789.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] Length = 321 Score = 64.4 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 61/152 (40%), Gaps = 4/152 (2%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF---RRVIETQHLGLSL 65 + FP+ +D+++ AG+ + AV + + + + + G L Sbjct: 170 KRIYRRGFPDFMDMMITCADAGMSLEAAVERVGAELAGTHKWLGIQLSIMTLQLRAGKPL 229 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ + + L+E + + +LG +L++AL S +R ++ + A+ +A ++ Sbjct: 230 REALRELADRIGLEEARALAVLFRQSEELGTSLTDALRIYSDEMRGQRILHAEERANALP 289 Query: 126 AKASAWI-IGSLPFCVSTLVYFTSPGYMNVLI 156 K + + P + ++ V Sbjct: 290 VKMMIPLGLCIFPVVMMVIMLPLIIRMKGVFF 321 >gi|119486410|ref|ZP_01620468.1| type II secretion system protein [Lyngbya sp. PCC 8106] gi|119456312|gb|EAW37443.1| type II secretion system protein [Lyngbya sp. PCC 8106] Length = 376 Score = 64.4 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 21/164 (12%), Positives = 59/164 (35%), Gaps = 6/164 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 D AG+ ++ ++V+ Q + ++ + G +LSES+ + Sbjct: 34 KDLAIFARQFAAMFNAGIAMARCLSVLSEQCDNARLKRALTTIRADVEEGNALSESMRKF 93 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + ++GG L E L L+ ++ ++++++ K +I Sbjct: 94 PD-----VFDMLFISMVSAGEVGGVLDEVLERLAVMMEKNHKTESEIKSAMSYPKTVLFI 148 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 ++ F ++ + T G + + ++ ++ + Sbjct: 149 ALAVFFAMTIFLLPTFAGIFEQIGTELPLFTVIMLSISDFCTTW 192 >gi|172065281|ref|YP_001815993.1| type II secretion system protein [Burkholderia ambifaria MC40-6] gi|171997523|gb|ACB68440.1| type II secretion system protein [Burkholderia ambifaria MC40-6] Length = 324 Score = 64.4 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 68/164 (41%), Gaps = 4/164 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + I R +DFP+ALD++ V AGL + A+ + + S+ V E ++ Sbjct: 157 LSRRIATRQRVIFEDFPDALDLLTVCVEAGLGLDAALMRVSEELRFRSEVVSGELDLLLL 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ +++ F ++ + G +++E+L LS +LR R+ M+A Sbjct: 217 EMRSGFTKETALRNFALRTGTEDIESFCAMLIQADRFGTSIAESLRVLSDMLRTRRRMRA 276 Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 + +A + I P + L+ VL+ Sbjct: 277 EERAAKIALKLLFPLIFNIFPALMCVLLGPAMIHVYRVLLPSLA 320 >gi|120554274|ref|YP_958625.1| general secretion pathway protein F [Marinobacter aquaeolei VT8] gi|120324123|gb|ABM18438.1| general secretion pathway protein F [Marinobacter aquaeolei VT8] Length = 403 Score = 64.4 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 55/161 (34%), Gaps = 9/161 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + +++G+PV A++ Q + +RS + G +L++S Sbjct: 64 ADLALVTRQLATLIQSGIPVEQALSAAAQQSTKPRIRSMLIAIRAKVMEGYTLADSFGEF 123 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P + G+L L L+ R+ + K+Q ++ + Sbjct: 124 PKAFP-----RLYRSTVAAGEHAGHLDLVLNRLADYTESRQEARQKIQLAAIYPI---IL 175 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 V L+ + P + V + + L VA + Sbjct: 176 SVVAIAIVVFLLTYVVPDIIEVFLKQGQELPGLTVAMLSVS 216 Score = 38.6 bits (88), Expect = 0.45, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 42/126 (33%), Gaps = 7/126 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +G+P+ +A+ + S+ +R E R G SL S+ + + P+ Sbjct: 276 LSILTTSGVPLVEAMRIAGEVLSNDYLRQELREAARKVSEGGSLHRSLDQTGYFPPM--- 332 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L L +R+ + K E ++ + V Sbjct: 333 ---MLHMIASGEASGELDSMLERTARMQENTLQSKIAAIVGLFEPMMLLFMGAVVLIIVL 389 Query: 142 TLVYFT 147 ++ Sbjct: 390 AIMLPI 395 >gi|212224828|ref|YP_002308064.1| hypothetical protein TON_1677 [Thermococcus onnurineus NA1] gi|212009785|gb|ACJ17167.1| conserved hypothetical membrane protein [Thermococcus onnurineus NA1] Length = 304 Score = 64.4 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 67/185 (36%), Gaps = 10/185 (5%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 I KR + P+A + S+RAG+ S+A+ + + EF++ + G Sbjct: 86 WKITKRIEEMEKMLPDAFFYLASSLRAGISFSEALEELTTAKFGALTEEFKKTVAEIKKG 145 Query: 63 LSLSESISRMV-RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 S E++ R + +I + G +S+ L + +R+ +K + +A Sbjct: 146 RSTVEALRAFAIRNRKSTVIYRSMMIIIEAIERGAPMSDILVFVGNDVREILRIKKERKA 205 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYM---------NVLINDPRGHMLLGVAAAFM 172 + + + + G M + + G ++L + + Sbjct: 206 STGMQVMFFIVTSGFIGPLILGIVSQVMGAMSTGEITFPIDTIKTILLGFVVLQAIVSGL 265 Query: 173 LIGIM 177 IG++ Sbjct: 266 GIGVI 270 >gi|167041769|gb|ABZ06512.1| putative bacterial type II secretion system protein F domain protein [uncultured marine microorganism HF4000_010L19] Length = 410 Score = 64.4 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 52/156 (33%), Gaps = 6/156 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 +RAGLPV + + +++ Q+ ++ + + G +LS+ + + Sbjct: 73 FCKQFATMLRAGLPVLNTLNMLIEQTKAPGMKKIITSIRKDLESGNALSKCFEKHPK--- 129 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G L L + L R+ +K+++++ + + Sbjct: 130 --VFDTVVVNLIKAGEASGKLDTFLQKIVISLEKREKIKSQIKSALFYPGVLLSVAIIVT 187 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + V + G +AA+ L Sbjct: 188 IFMLMKVVPVFAKMYEGMGVPVPGSTAAIMAASDFL 223 >gi|51597675|ref|YP_071866.1| hypothetical protein YPTB3377 [Yersinia pseudotuberculosis IP 32953] gi|51590957|emb|CAH22615.1| Putative exported protein [Yersinia pseudotuberculosis IP 32953] Length = 277 Score = 64.4 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 4/157 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 +K+ + KRT L P +DI V++G+ + +++ + + + Sbjct: 117 IKNALTKRTNNLLKSLPFFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTK 176 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + L +I + Y P E+ F + + G + E L +LS+ +R+ + + + Sbjct: 177 RAEINGLENAIKELQYYSPAIEMKMFCSTLQYSISFGSTVYEQLTHLSQDMREMQLLMTE 236 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + K + + + LV SP + +L Sbjct: 237 ESISKLSTKLTLPLFLFILIPFVLLV--ISPSILELL 271 >gi|332162959|ref|YP_004299536.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667189|gb|ADZ43833.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 274 Score = 64.4 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 59/147 (40%), Gaps = 2/147 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 +K+++ KRT L P +DI V++G+ + ++++ + +++ Sbjct: 117 VKNIVAKRTKSLLRSLPFFIDITAACVQSGMTIDNSLSYSAKKFELINADLSLIMLKVTR 176 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + L +I + E+ F + + G + E L LS+ +R+ + + + Sbjct: 177 RAEINGLENAIKEFNQSSTELEIRMFCSALQYSISFGATVYEQLIKLSKDMREMQLLVTE 236 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVY 145 + + AK + + + LV Sbjct: 237 EKISKLTAKLTIPLFLFILIPFIVLVI 263 >gi|297581613|ref|ZP_06943535.1| flp pilus assembly protein TadC [Vibrio cholerae RC385] gi|297534020|gb|EFH72859.1| flp pilus assembly protein TadC [Vibrio cholerae RC385] Length = 305 Score = 64.4 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 62/148 (41%), Gaps = 6/148 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIET 58 K+R + + +A+D++V S+ AGL + A+ + + +F R Sbjct: 150 SKQAKQRQQQIVA---DAMDLMVISIEAGLSLDRALERVGHYLLDVEPMLAKQFLRTHAE 206 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + + ++ LQE+ + +++ + G L+E + N+S+ R + M + Sbjct: 207 IQVLGDTALCMKKLAWRTGLQELERCAATLAMAQRYGSPLAETMRNISQDARQMRKMALQ 266 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYF 146 QA + + + + + + L+ Sbjct: 267 EQAGKLPGRITLIQMAFIMLPLLVLIIA 294 >gi|289755783|ref|ZP_06515161.1| conserved membrane protein [Mycobacterium tuberculosis EAS054] gi|289696370|gb|EFD63799.1| conserved membrane protein [Mycobacterium tuberculosis EAS054] Length = 221 Score = 64.4 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 1/166 (0%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 +++V +RAG A ++ ++ PV R V LG ++ + R L Sbjct: 52 FELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAARSSALP 111 Query: 80 -EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + S G ++ + R + +R+ A+V A A+ASA I+ LP Sbjct: 112 AYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILPL 171 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L ++ L+ G LL V G++ + + Sbjct: 172 LGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITD 217 >gi|261253993|ref|ZP_05946566.1| MSHA biogenesis protein MshG [Vibrio orientalis CIP 102891] gi|260937384|gb|EEX93373.1| MSHA biogenesis protein MshG [Vibrio orientalis CIP 102891] Length = 406 Score = 64.0 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 23/165 (13%), Positives = 50/165 (30%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + + +AG+P+ ++ + SS+ ++ V + G SLS S+ Sbjct: 66 EVLVIFCRQLYSLTKAGVPLLRSMKGLSQNSSNKQLQEALEDVTQELTNGRSLSSSMQMF 125 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + S + + G L EAL L+ + +++ Sbjct: 126 PK-----VFSPLFVSMIHVGENTGRLDEALLQLANYYEQEVETRKRIKTAMRYPTFVISF 180 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 I F ++ V D + +A + + Sbjct: 181 IMVAMFVLNVKVIPQFSSMFARFGVDLPLPTRILIATSEFFVNYW 225 Score = 42.0 bits (97), Expect = 0.034, Method: Composition-based stats. Identities = 11/135 (8%), Positives = 35/135 (25%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 ++AG+P++ ++A+ + + S+ + Sbjct: 268 RAQLSRFSRTFALMLKAGVPLNQSLALSAEALGNKFLE-----NRLLEMKSSIEAGGTIS 322 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G + E L ++ + K +E + Sbjct: 323 STAINSGVFTPLVIQMISVGEETGRIDELLLEVADFYDREVDYDLKTLTARIEPILLVIV 382 Query: 133 IGSLPFCVSTLVYFT 147 G + + Sbjct: 383 AGMVLILALGIFLPM 397 >gi|259907451|ref|YP_002647807.1| type IV pilin biogenesis protein [Erwinia pyrifoliae Ep1/96] gi|224963073|emb|CAX54556.1| Putative outer membrane protein export (MTB) system [Erwinia pyrifoliae Ep1/96] gi|283477284|emb|CAY73200.1| Type IV pilus assembly protein tapC [Erwinia pyrifoliae DSM 12163] Length = 399 Score = 64.0 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 17/144 (11%), Positives = 41/144 (28%), Gaps = 6/144 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMVRYMP 77 L + ++AG+P+ + ++ + + + G S+++ P Sbjct: 64 FLRQLATLLKAGMPLPACLQLLADGHPEAGWQALLIHLHQRISAGEPFSQALREWPDIFP 123 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + +L G L E L+ ++ ++ KVQ + + Sbjct: 124 PLIP-----ALVHIGELTGELDECCLQLAIQQEKQQLLRQKVQKALRYPLFIMAVALLVS 178 Query: 138 FCVSTLVYFTSPGYMNVLINDPRG 161 + V G Sbjct: 179 IGMLVFVLPEFVAIYRSFNAPLPG 202 Score = 40.9 bits (94), Expect = 0.090, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 7/135 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLSESISRMV 73 + + RAGL + ++ I S + E ++ G L +++ Sbjct: 264 QLSQIFTTLSLTQRAGLTLLHSLQAIEQTLSPLLWREAVSQLQQHIAAGYPLHQALKSHP 323 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + P + + G+L L L+ + + A A ++E I Sbjct: 324 LFTP------LCYQLVKVGEESGSLDTLLVRLAVWHEQQTHQLADTLAAALEPLMMIVIG 377 Query: 134 GSLPFCVSTLVYFTS 148 G + V + Sbjct: 378 GIVGTLVVAMYLPVF 392 >gi|167902780|ref|ZP_02489985.1| bacterial type II secretion system protein F domain [Burkholderia pseudomallei NCTC 13177] Length = 270 Score = 64.0 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + ++ +R P+ALD++V AG ++ A+ + + P+ EF + Sbjct: 110 LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 169 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + +++ M + L + T + Q G ++++L LSR R + + Sbjct: 170 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 229 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K + ++ + V+ + Sbjct: 230 EEKAAKLAPKMTLPMMLFVMPTVALI 255 >gi|283778327|ref|YP_003369082.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283436780|gb|ADB15222.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 474 Score = 64.0 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 55/167 (32%), Gaps = 6/167 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 + AGLP+ ++ ++ + +++ V + G +LSE++++ Sbjct: 73 SKQLSLFTKQLSILQDAGLPILRSLRILELQSKPGALKNALMDVGDEIESGSTLSEAMAK 132 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + S + + GG L L LS L +++K KV+ + Sbjct: 133 SPK-----VFSRLYINMIKAGEAGGALEVILRRLSEFLERSESLKRKVKGAMIYPVVVVL 187 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + S+ + + + L + + ++ Sbjct: 188 VAISILVFIMLKIVPVFKKMFDEFGLKLPAATELLINISNWVVNYGW 234 >gi|167626077|ref|YP_001676371.1| general secretion pathway protein F [Shewanella halifaxensis HAW-EB4] gi|167356099|gb|ABZ78712.1| general secretion pathway protein F [Shewanella halifaxensis HAW-EB4] Length = 407 Score = 64.0 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 61/174 (35%), Gaps = 8/174 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 + I V AGLP+ +A+ + Q D + S V G SL++S++ Sbjct: 66 TAELALITRQIATLVAAGLPIEEALKAVGQQCEKDRLASMVMAVRSRVVEGYSLADSMAE 125 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + G+L L L+ R+ +K+K+ + Sbjct: 126 FP-----HIFDELYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKMTQAMIYPIVLTV 180 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML--IGIMVMRLMI 183 + + + V G + + L +A++ + G++V+ ++ Sbjct: 181 VAIGVIAILLAAVVPQVVGQFEHMGQELPWTTELLIASSDFIRDYGLIVLVAIV 234 >gi|152967731|ref|YP_001363515.1| type II secretion system protein [Kineococcus radiotolerans SRS30216] gi|151362248|gb|ABS05251.1| type II secretion system protein [Kineococcus radiotolerans SRS30216] Length = 286 Score = 64.0 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 67/172 (38%), Gaps = 3/172 (1%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 +P+ +D + +VRAG + +AV + + R F R + + R+ Sbjct: 109 QWPDVVDTLASAVRAGASLPEAVCALAVRGPRSSRPAFARFAAAHRASGAFEPELRRLQD 168 Query: 75 YMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + + Q G +L L LS LR+ + + ++ A ++A + Sbjct: 169 ELADPVFDRLAATLRMTRQVGGSDLGTTLRTLSGYLREDQRTRGELLARQSWTVSAARLA 228 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + P+ V L+ T PG + + G ++LG A VM + Sbjct: 229 VAAPWVVLALL-ATRPGTLEA-FDTGAGVVVLGAGAVVSAGSYAVMSRLGRL 278 >gi|171060103|ref|YP_001792452.1| general secretion pathway protein F [Leptothrix cholodnii SP-6] gi|170777548|gb|ACB35687.1| general secretion pathway protein F [Leptothrix cholodnii SP-6] Length = 405 Score = 64.0 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 54/172 (31%), Gaps = 6/172 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLS 66 R + V AGLP+ A+ + ++ DP + E + + G + Sbjct: 60 RRVFTSTTLAIWTRQLAGLVGAGLPLERALTALGDEAEDPKQGELLAHLRAEVNAGSPFA 119 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ R E + + G L L L+ L +R+ +K K+ ++ Sbjct: 120 RALASAPR-----EFDDVYRAVVAAGEQSGQLGRVLDKLADDLEERQALKGKLIGATLYP 174 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + + + T V + +A + L Sbjct: 175 AIVSLVAIVIVVFLVTYVVPQVAQVFAGGKRALPFLTMAMLAISDFLRTWGW 226 Score = 38.6 bits (88), Expect = 0.43, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77 + +G+P+ A+ S+ + G L+ +++ R+ Sbjct: 274 FAGTLAMLAGSGVPILKALQAAAETLSNRAMRADALDALAQVREGAPLASALAAKKRFPG 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L L + L +A A +E + ++ Sbjct: 334 ------LLQMFARLGEQTGELPLMLQRAATQLSAEVQRRAMQTATILEPLLIVVMGAAVM 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 LIVLAVLMPI 397 >gi|126454623|ref|YP_001066155.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|242317969|ref|ZP_04816985.1| bacterial type II secretion system protein [Burkholderia pseudomallei 1106b] gi|126228265|gb|ABN91805.1| bacterial type II secretion system protein [Burkholderia pseudomallei 1106a] gi|242141208|gb|EES27610.1| bacterial type II secretion system protein [Burkholderia pseudomallei 1106b] Length = 314 Score = 64.0 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + ++ +R P+ALD++V AG ++ A+ + + P+ EF + Sbjct: 154 LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + +++ M + L + T + Q G ++++L LSR R + + Sbjct: 214 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 273 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K + ++ + V+ + Sbjct: 274 EEKAAKLAPKMTLPMMLFVMPTVALI 299 >gi|170699039|ref|ZP_02890096.1| general secretion pathway protein F [Burkholderia ambifaria IOP40-10] gi|172059126|ref|YP_001806778.1| general secretion pathway protein F [Burkholderia ambifaria MC40-6] gi|170136075|gb|EDT04346.1| general secretion pathway protein F [Burkholderia ambifaria IOP40-10] gi|171991643|gb|ACB62562.1| general secretion pathway protein F [Burkholderia ambifaria MC40-6] Length = 405 Score = 64.0 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 12/187 (6%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L R + + + AGLP+ +A+ V+ Q+ D +R + Sbjct: 55 QRLAFGRKLSQREQ-AILTRQLASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++ + R + + + G L L+ L+ + +K K+ Sbjct: 114 GGHSLANALGQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIMV 178 + V+ L+ + P +NV + + +L V A + Sbjct: 169 LAFTYPG---IVTLIAFGIVTFLLSYVVPQVVNVFASTKQQLPVLTVVMMALSEFVRHWW 225 Query: 179 MRLMINF 185 ++I Sbjct: 226 WAILITV 232 Score = 35.1 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ S+ I G +LS +++ + + P Sbjct: 274 FASTLGILTAAGVPILRALQAAGETLSNRAMRANIDDAIVRVREGSALSRALNNVKTFPP 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+++ L + + +E + G + Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAAEGEARELERRTMFLTSLLEPLLILAMGGIVL 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 VIVLAVMLPI 397 >gi|228982961|ref|ZP_04143220.1| Flp pilus assembly protein TadB [Bacillus thuringiensis Bt407] gi|228777144|gb|EEM25452.1| Flp pilus assembly protein TadB [Bacillus thuringiensis Bt407] Length = 321 Score = 64.0 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 25/188 (13%), Positives = 55/188 (29%), Gaps = 3/188 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K L + + P+A+D I+R + + +P+R + Sbjct: 132 IKMLAVDLMEQIEEQLPSAIDHIIRISSKYGDMKSIIYETARSCDNPLREILENISRKM- 190 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVIS--VQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + + ++ + ++ E L +L IL +K Sbjct: 191 ISGDAETVLLQFGEEYDNVWINSLVFTLISYMEDASKTTTIENLRHLRNILEKENRLKKS 250 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + A + I L L +P + G + + +L IM+ Sbjct: 251 RVTDAKYSVAINYFIAVLASGAGLLNIVLNPKGREFFFSSFLGLICFLLGYGAVLGTIML 310 Query: 179 MRLMINFD 186 M Sbjct: 311 NIKMTRVK 318 >gi|115350106|ref|YP_771945.1| general secretion pathway protein F [Burkholderia ambifaria AMMD] gi|115280094|gb|ABI85611.1| general secretion pathway protein F [Burkholderia ambifaria AMMD] Length = 405 Score = 64.0 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 12/187 (6%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L R + + + AGLP+ +A+ V+ Q+ D +R + Sbjct: 55 QRLAFGRKLSQREQ-AILTRQLASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++ + R + + + G L L+ L+ + +K K+ Sbjct: 114 GGHSLANALGQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIMV 178 + V+ L+ + P +NV + + +L V A + Sbjct: 169 LAFTYPG---IVTLIAFGIVTFLLSYVVPQVVNVFASTKQQLPILTVVMMALSEFVRHWW 225 Query: 179 MRLMINF 185 ++I Sbjct: 226 WAILITV 232 Score = 35.1 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ S+ I G +LS +++ + + P Sbjct: 274 FASTLGILTAAGVPILRALQAAGETLSNRAMRANIDDAIVRVREGSALSRALNNVKTFPP 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+++ L + + +E + G + Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAAEGEARELERRTMFLTSLLEPLLILAMGGIVL 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 VIVLAVMLPI 397 >gi|126440858|ref|YP_001058913.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|254198255|ref|ZP_04904677.1| bacterial type II secretion system protein [Burkholderia pseudomallei S13] gi|126220351|gb|ABN83857.1| bacterial type II secretion system protein [Burkholderia pseudomallei 668] gi|169654996|gb|EDS87689.1| bacterial type II secretion system protein [Burkholderia pseudomallei S13] Length = 314 Score = 64.0 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + ++ +R P+ALD++V AG ++ A+ + + P+ EF + Sbjct: 154 LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + +++ M + L + T + Q G ++++L LSR R + + Sbjct: 214 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 273 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K + ++ + V+ + Sbjct: 274 EEKAAKLAPKMTLPMMLFVMPTVALI 299 >gi|302544239|ref|ZP_07296581.1| putative integral membrane protein [Streptomyces hygroscopicus ATCC 53653] gi|302461857|gb|EFL24950.1| putative integral membrane protein [Streptomyces himastatinicus ATCC 53653] Length = 230 Score = 64.0 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 58/167 (34%), Gaps = 3/167 (1%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + +RAG +A+ + S + + V G + E++ R R Sbjct: 56 ELCGTVAGELRAGRQPGEALLSV---PSGDLGERWGLVSAAARFGGDVPEALRRAARQPG 112 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++ + V G L+ L ++ LR + + ++A K + ++ LP Sbjct: 113 AEGLTGVAACWQVAVDEGAGLAAGLDRVASALRAEREQREILRARLAGPKVTVAVLAVLP 172 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + ++ L++ P G L G + +R + Sbjct: 173 AFGLVMGAALGTEPLHQLLHTPVGLGCLLGGCLLEWAGFVWLRRSMR 219 >gi|262195827|ref|YP_003267036.1| general secretion pathway protein F [Haliangium ochraceum DSM 14365] gi|262079174|gb|ACY15143.1| general secretion pathway protein F [Haliangium ochraceum DSM 14365] Length = 412 Score = 64.0 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 63/170 (37%), Gaps = 6/170 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMV 73 + + +RAG+P+++++ + Q +P V + G SL++++ + Sbjct: 74 EVAAFTRQLATLLRAGIPLAESLGALFEQIENPKFQAIVGEVRTAVNEGSSLADALQKHP 133 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + +L GNL E L L+ + +++KVQ + + Sbjct: 134 R-----VFDELFVSMVRAGELAGNLDEVLERLAEFMESSAQLRSKVQGAMIYPVIMIVVG 188 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 ++ + V + L +A + ++ + + +++ Sbjct: 189 IAIMSILMVAVVPKITMIFEQQDKALPWNTELLIAMSNLIGSLWWLLILL 238 Score = 35.1 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 41/134 (30%), Gaps = 7/134 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + +RAG+P+ A+ + + R G SL+ ++ R Sbjct: 277 AIARFTRTMSTMLRAGVPMLRALDTSKDILGNAVLMDVVDRARTAVSEGESLAVTLRRSG 336 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + P T + + G L L +S + + + + + Sbjct: 337 HFPP------AVTHMIGVGERAGELENMLMRISDAYENDVDTEIGRLTSLLTPVMVIGMA 390 Query: 134 GSLPFCVSTLVYFT 147 + F + +++ Sbjct: 391 LGVGFVIFSIMMPI 404 >gi|91772494|ref|YP_565186.1| type II secretion system protein [Methanococcoides burtonii DSM 6242] gi|91711509|gb|ABE51436.1| type II secretion system protein F domain [Methanococcoides burtonii DSM 6242] Length = 716 Score = 64.0 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 23/187 (12%), Positives = 64/187 (34%), Gaps = 7/187 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQ 59 K +R P A+ + + G+ + + ++ + V E +I Sbjct: 175 KFQASERKGDIDRQLPYAVTFMYALSKGGMNIIEVFRLLSRSGSTYGEVSKEINAIIREM 234 Query: 60 HLGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + +IS + P + + GG++ + + + ++ K Sbjct: 235 DYFGYDMKTAISNISERSPSDRFNELMDNLITIIDSGGSIPRYFQDKAEQYLQKTSIDEK 294 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 ++ A +++ + + ++ G M ++ M+ + A + IG ++ Sbjct: 295 GFLETLGLLAESYVTAFVAGPLFIIIM----GVMMAVMGSGSEVMVYAIIYAVLPIGSLM 350 Query: 179 MRLMINF 185 +MI+ Sbjct: 351 FVVMISI 357 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 64/145 (44%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++ ++ +FP+ L + + G+ + D++ ++ S + +E R + G+ Sbjct: 494 IMSRKKKHLERNFPDFLKKLASTNETGMTLRDSIKLMAKSKSGHLGNEIRMIWADISWGM 553 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++++S+ R + Q ++ T+I+ ++ G++ E L +R ++MK + Sbjct: 554 NVNDSLIRFANRLRTQVIARSLTLITKANESSGDVGEVLLVAARDAASEQSMKRERAMSM 613 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTS 148 M +I + V ++ T Sbjct: 614 MIYIVIIYISFLVFVGVIYVISTTF 638 >gi|150391218|ref|YP_001321267.1| type II secretion system protein [Alkaliphilus metalliredigens QYMF] gi|149951080|gb|ABR49608.1| type II secretion system protein [Alkaliphilus metalliredigens QYMF] Length = 405 Score = 64.0 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 21/186 (11%), Positives = 63/186 (33%), Gaps = 14/186 (7%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLS 66 + D + AG+ ++ ++ V++ Q+ + +++ + G LS Sbjct: 60 KQKVKTKDLTVFCKQFYTMLNAGMSLTSSLEVLMDQTENKTLKAVIEDLFTQVQKGDILS 119 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + + P + ++ G L + L +S + +K++ + Sbjct: 120 DAMKKHKKVFPP-----ILLNMVEAGEMTGTLDDVLEKMSVHFEKENKINSKIKGAMIYP 174 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLIND-----PRGHMLLGVAAAFMLIGIMVMRL 181 + V L+ F P ++ + + +LL ++ + + Sbjct: 175 L---ILSIVAILVVIFLLVFIMPTFLTMFTSSGVQLPLPTRILLALSNVLTRFWYLFVIG 231 Query: 182 MINFDV 187 + V Sbjct: 232 ISGIVV 237 Score = 40.9 bits (94), Expect = 0.077, Method: Composition-based stats. Identities = 13/124 (10%), Positives = 41/124 (33%), Gaps = 5/124 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+P+ A+ +++ V S+ ++ + + +S V + + Sbjct: 274 FTRTLSTLLTSGIPIISALEASANVTNNKVVSDGIEMVVD-----DIRKGVSLAVLFKKM 328 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G+L + L+ + + + +E + + F Sbjct: 329 NVFPPMMVSMVSIGEESGSLDDMLSKTADFYDEELEAAIQQMVSMLEPLMIVVMAVIIGF 388 Query: 139 CVST 142 V Sbjct: 389 IVIA 392 >gi|296158517|ref|ZP_06841347.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] gi|295891085|gb|EFG70873.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] Length = 293 Score = 64.0 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 68/146 (46%), Gaps = 1/146 (0%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + + ++R + L P LD + +V AGL ++ A+ V + P+R E V+ Sbjct: 136 RDVRRRRVGQILRHLPIYLDFLTLAVEAGLNINGAIQKSVEKGPEGPLRRELEHVLRDLK 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 GL+ +E++ R+ + ++EV+ + ++G L+++L S R + +A+ Q Sbjct: 196 SGLNRTEALRRLDDRLRIKEVTNLVGTVVQAERMGSGLAKSLRFQSEQRRSERFQRAEKQ 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146 A+ K ++ + ++ F Sbjct: 256 AMEAPVKLVFPLLMFIFPITFIVLGF 281 >gi|254468444|ref|ZP_05081850.1| type II Secretion System PilC [beta proteobacterium KB13] gi|207087254|gb|EDZ64537.1| type II Secretion System PilC [beta proteobacterium KB13] Length = 410 Score = 64.0 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 53/156 (33%), Gaps = 6/156 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISR 71 D + VR+GL + D++ +I Q+ + V R +I ++G+ S+ + + Sbjct: 66 QKDLLIFTKKLATMVRSGLTILDSLNLISTQTENIVFRKYINEMIRDINVGMPFSDVVRK 125 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + ++ G L + L + + ++ +++ Sbjct: 126 HP-----TVFDSIFCNMIEAGEISGKLDQFLDRIVDGQERMEKIRKGIKSALFYPVTLIV 180 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 + + + + V T + + G + + Sbjct: 181 VTILIVWAMLIFVVPTFQEMYAGMGIELPGPTQMII 216 >gi|20092770|ref|NP_618845.1| hypothetical protein MA3976 [Methanosarcina acetivorans C2A] gi|19918065|gb|AAM07325.1| conserved hypothetical protein [Methanosarcina acetivorans C2A] Length = 667 Score = 64.0 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 62/163 (38%), Gaps = 4/163 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 ++ + D P L + G+ ++DA+A+ + +RSE + + +L Sbjct: 455 RKIRQIEDQVPEFLKRLASINGTGILLADAIAITAQSNMGKLRSEIKCTVADIRWNSNLE 514 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ R + T+I+ S+ G++ + ++ ++ D +++ ++ Sbjct: 515 EALKRFEARIRTNMTRRSLTLIAKASESTGDIHKVISTVA----DDADIEKNLKKERSAE 570 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 I + FCV ++ + + ++ + Sbjct: 571 MFIYVFIIFVTFCVFLVIVYVLAAFFLPALDGSSNPAMSMGGF 613 Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 24/181 (13%), Positives = 55/181 (30%), Gaps = 6/181 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVR-AGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQ 59 R P+A + R G+ + D + + S EF +I Sbjct: 149 MKADSRKRAINATMPHATAFLYVLQRGGGMTIFDIMKSLSKHSHLYGTASHEFGNIIRDV 208 Query: 60 HLGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L +++ P ++ + GG+++ L N + + + N + K Sbjct: 209 EYFGKDLQDALWNAADRTPSEQFKDLVDGLISIVSGGGDITLYLKNKTDLYKSNANKEHK 268 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 ++ A +I + + +V ++ +L A I + Sbjct: 269 RFLDTLGLLAEVYITVFVVGPLFLMVILVVMNMIDN--GGATNLYILVYGAIPFGTAIFL 326 Query: 179 M 179 + Sbjct: 327 V 327 >gi|261250569|ref|ZP_05943144.1| general secretion pathway protein F [Vibrio orientalis CIP 102891] gi|260939138|gb|EEX95125.1| general secretion pathway protein F [Vibrio orientalis CIP 102891] Length = 408 Score = 64.0 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 58/171 (33%), Gaps = 8/171 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + V++G+P+ + + + QS +R+ V G +L++S++ Sbjct: 69 DLALITRQLSTLVQSGMPLEECLKAVSEQSEKPRIRTMLLAVRSKVTEGYTLADSLADFP 128 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G+L L L+ +R+ +++K+Q + Sbjct: 129 -----HIFDELFRSMVSAGEKSGHLDSVLERLADYAENRQKLRSKLQQAMIYPVVLVVFA 183 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLM 182 + + V G + + LL + G+ ++ + Sbjct: 184 VCIVAFLLAAVVPKIVGQFVQMGQELPQSTQFLLASSEFIQNWGLYLLIAI 234 >gi|78061921|ref|YP_371829.1| general secretion pathway protein F [Burkholderia sp. 383] gi|77969806|gb|ABB11185.1| General secretion pathway protein F [Burkholderia sp. 383] Length = 405 Score = 64.0 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 27/174 (15%), Positives = 59/174 (33%), Gaps = 15/174 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + + +R + + AGLP+ ++++V+ Q+ D VR + Sbjct: 59 LGRKLSQREQAI------ITRQLASLLVAGLPLDESLSVLSEQAERDYVRELMASIRAEV 112 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G S + ++S+ R + + + G L L+ L+ + +K K+ Sbjct: 113 VGGHSFANALSQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEQSNALKQKI 167 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + V+ L+ + P NV + + L V + Sbjct: 168 LLAFTYPG---IVTLIAFGIVTFLLSYVVPQVANVFTSTKQQLPTLTVVMLALS 218 Score = 36.3 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 36/130 (27%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ S+ I G +LS +++ Sbjct: 274 FASTLGILTAAGVPILRALQAAGETLSNRAMRANVDDAIVRVREGSALSRALA------H 327 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G+++ L S + +E + G + Sbjct: 328 TKTFPPVLVHLIRSGEATGDVTTMLDRASEGESRELERRTMFLTSLLEPLLILAMGGVVL 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 VIVLAVMMPI 397 >gi|239814078|ref|YP_002942988.1| general secretion pathway protein F [Variovorax paradoxus S110] gi|239800655|gb|ACS17722.1| general secretion pathway protein F [Variovorax paradoxus S110] Length = 411 Score = 64.0 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 57/169 (33%), Gaps = 13/169 (7%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVR 74 + V +GLP+ A+ + ++ +P R+ + + G + +++ R Sbjct: 74 LSVWTRQLAGLVSSGLPLERALTALTDEAETEPQRNLVASLRAEVNAGSPFARALAAHPR 133 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 E S T + + GNL L L+ L +R+ ++ K+ ++ + Sbjct: 134 -----EFSPIYTAVIGAGEQSGNLGLVLDRLADDLEERQALQQKLIGAALYPA---IVTL 185 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI----MVM 179 V LV + P V R L + + M Sbjct: 186 VAIVIVIFLVSYVVPQVAQVFAGTKRSLPFLTTVMLSLSAAVRSYGWWM 234 Score = 35.1 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 39/130 (30%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ + + G L+ ++++ R+ Sbjct: 280 FASTLAMLATAGVPILRALQAASETLGNRAMRADALDALVLVREGAPLASALAQKKRFPG 339 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + + G L L + L +A A +E + G + Sbjct: 340 ------LVSMFARLGEQTGTLPLMLQRAANQLGAEVQRRAMHLATILEPLLIVAMGGVVM 393 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 394 LIVLAVMLPI 403 >gi|86157052|ref|YP_463837.1| type II secretion system protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85773563|gb|ABC80400.1| type II secretion system protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 417 Score = 64.0 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 21/169 (12%), Positives = 48/169 (28%), Gaps = 6/169 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 D + AGLP+ A+ +I Q+ + R V G + ++++ Sbjct: 77 TKDLLVFTRQFSVMIDAGLPLVQALDIIATQADNVEFRKVLSTVKVKVESGSTFADALGE 136 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + ++GG L L L + + + +V+ + Sbjct: 137 HPK-----VFDELFVQLVRAGEIGGILDTILQRLGAYIEKNEKLSRRVKGAMVYPAIVLT 191 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + S+ + V T L + + + Sbjct: 192 VAVSVVGILIAFVVPTFEKMFKDFGGAMPAPTQLLIDISHGFRNYWFVY 240 Score = 41.3 bits (95), Expect = 0.065, Method: Composition-based stats. Identities = 12/130 (9%), Positives = 40/130 (30%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+P+ DA+ ++ + + + +SE + Sbjct: 286 FTRTLGTMLSSGVPILDALEIVAKSAGNRTIERGILYVR-----AKISEGKNIAGPLAET 340 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G + L ++ D ++ +E ++ G++ F Sbjct: 341 KVFPAMVVQMIGVGEATGAMDAMLNKIADFYDDEVDVAVGALTSMIEPLMMVFLGGTVGF 400 Query: 139 CVSTLVYFTS 148 + + Sbjct: 401 FMIAMYMPIF 410 >gi|206891097|ref|YP_002248616.1| type IV pilin [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743035|gb|ACI22092.1| type IV pilin [Thermodesulfovibrio yellowstonii DSM 11347] Length = 403 Score = 64.0 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 59/181 (32%), Gaps = 13/181 (7%) Query: 2 KHLIKKRTAKF-------LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFR 53 +++ +K+ KF D +G+PV A ++GQ + + Sbjct: 41 RYVKEKQEKKFFSLGKVSQKDILFFTRQFATLFASGVPVVQAFDALIGQIKNKNFKKILI 100 Query: 54 RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 ++ G SL++S+ R R S + + GG L + L ++ Sbjct: 101 QMRNDIEKGSSLADSMRRHPR-----VFSSLFVNMVRAGEEGGMLDKVLQRMADYFEKMI 155 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 +K K+ + + + + V T + D + +A + + Sbjct: 156 KLKRKIIGAMIYPSLVIAVAILVVAIIMIFVIPTFAKLFAEMGLDLPLPTRITIAMSNFM 215 Query: 174 I 174 Sbjct: 216 A 216 >gi|270308518|ref|YP_003330576.1| type II secretion system protein [Dehalococcoides sp. VS] gi|270154410|gb|ACZ62248.1| type II secretion system protein [Dehalococcoides sp. VS] Length = 401 Score = 64.0 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 20/174 (11%), Positives = 59/174 (33%), Gaps = 13/174 (7%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72 + + + +G + ++ ++ Q+++ + ++ G SLS ++S+ Sbjct: 62 REVILFSRQLALLLESGTDIVTSLELLQEQTTNKLFRDIIGEIVNDIRGGSSLSLAMSKH 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P + + GG+L L NL+ ++ + K+++ A + Sbjct: 122 PKAFPPLYHR-----VIAAGEQGGSLEIVLRNLANFVQRNVETEKKIKSALTYPGVVAVV 176 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-------AFMLIGIMVM 179 + + T V + + + + + + G V+ Sbjct: 177 GILVLLLMVTFVLPAFTSLYSQMGTELPTPTKILIGLSDFFEAWGLYVTGAFVI 230 Score = 35.1 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 20/140 (14%), Positives = 47/140 (33%), Gaps = 7/140 (5%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSE 67 L + A + +AGLP+ + + +++ + S V G LS Sbjct: 260 RILLLSELSRACQTMSLLFKAGLPLPEIMNQATTAANNKLISNALAEVQHDLIRGEGLSR 319 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +++ ++P+ + + G L + L+ +S + + ++ Sbjct: 320 PMTKNPLFLPM------MVQMVSVGEETGKLDDTLSTVSATYDTEADDRISAAIGMIQPI 373 Query: 128 ASAWIIGSLPFCVSTLVYFT 147 + I + F LV Sbjct: 374 MTIGIGLVVGFIAVALVSSM 393 >gi|146351305|ref|YP_001210532.1| putative typeII /IV secretion system integral membrane protein, TadB related [Arthrobacter nitroguajacolicus] gi|146218869|emb|CAL09940.1| putative typeII /IV secretion system integral membrane protein, TadB related [Arthrobacter nitroguajacolicus] Length = 290 Score = 64.0 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 21/171 (12%), Positives = 66/171 (38%), Gaps = 2/171 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + + G + + V + + + ++ + ++ + S ++ Sbjct: 105 EALATWTHSLSGLITTGAILEHVLQVSLRNAPEEIKPQVSNLVSRLNYRWSPPAALKAFA 164 Query: 74 RYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + GG L++AL +L+ I+ D + +++ + + +A + Sbjct: 165 DELNDATADIVVAHLLLAYKIRGGGLADALDDLASIINDEVRHRREIETDREKPRTTAKL 224 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + T + + ++ +P G +LL + A ++ ++ MR M Sbjct: 225 VTLITAVSLTFMALFAGQFLAA-YKEPLGQLLLTIYLAGYVMILIWMRQMT 274 >gi|71898255|ref|ZP_00680429.1| type II secretion system protein [Xylella fastidiosa Ann-1] gi|71731994|gb|EAO34051.1| type II secretion system protein [Xylella fastidiosa Ann-1] Length = 463 Score = 64.0 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 52/166 (31%), Gaps = 6/166 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + ++AG+P+ A+ ++ Q + +R+ ++ G SL ESIS+ Sbjct: 123 KDIAFFSRQMATMMKAGVPIVGALDILANGQKNPRMRTMVNQIKNDIEGGSSLYESISKH 182 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L ++ + + +K K++ A + Sbjct: 183 P-----VYFDELYRNLVRAGERAGVLETVLDTIASYKENIEALKGKIRKALFYPVAIVAV 237 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + V + + V + + Sbjct: 238 ALIVSSILLIYVVPQFEDVFKGFGAELPAFTQMIVNFSNFMQRWWW 283 Score = 38.2 bits (87), Expect = 0.59, Method: Composition-based stats. Identities = 16/136 (11%), Positives = 44/136 (32%), Gaps = 5/136 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + RAG+P+ +A+ ++ G + + + + +S+ SI+ Sbjct: 326 NSALARFSRTTAVTFRAGVPLVEALGIVAGATGN---KVYSDAVFRMRDDVSVGYSINMS 382 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 +R + + ++ + G L L ++ + + +E +I Sbjct: 383 MRQVGI--FPHMVVQMASIGEEAGALDAMLFKVAEYYEQEVSNAVDGLSSLLEPLIMVFI 440 Query: 133 IGSLPFCVSTLVYFTS 148 + V + Sbjct: 441 GVIVGGMVIAMYLPIF 456 >gi|167620118|ref|ZP_02388749.1| Bacterial type II secretion system protein F domain [Burkholderia thailandensis Bt4] Length = 254 Score = 64.0 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 62/146 (42%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + + +R P+ALD++V AG ++ A+ + + P+ EF + Sbjct: 94 LGFAVARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELGTICPPLADEFSVCAD 153 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + +++ M + L + T + Q G ++++L LSR R + + Sbjct: 154 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 213 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K + ++ + V+ + Sbjct: 214 EEKAAKLAPKMTLPMMLFVMPTVALI 239 >gi|134298900|ref|YP_001112396.1| type II secretion system protein [Desulfotomaculum reducens MI-1] gi|134051600|gb|ABO49571.1| type II secretion system protein [Desulfotomaculum reducens MI-1] Length = 401 Score = 64.0 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 58/167 (34%), Gaps = 7/167 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSL 65 KR K + + + AG+P++ + + Q+ + + S V G+ Sbjct: 56 KRKVKL-GELAFFSRQLAAMLTAGIPLTRCLYTLSEQTSNPILASCAGEVASKVESGIGF 114 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 SE++S S + ++ G+L+E L LS L K ++ ++A + Sbjct: 115 SEALSS-----HKAIFSTMYIEMVKAGEMSGSLNEILTRLSLQLEKDKLLRDSLKAATFY 169 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 G + + V G + P ++ + M Sbjct: 170 PSIVLTFAGLVILAMMFFVVPIFIGMFPPGMKLPLPTQIVVGLSNSM 216 Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 39/130 (30%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 ++ + G+PV A+ S +E R+ T+ + + ++ P Sbjct: 269 FSRMLATLLGGGIPVLQALESAGPSSGSRQVTEAIRMTGTRIQEGQSIATPLKESKFFPP 328 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G LS L ++ + K + +E + ++ Sbjct: 329 -----MVINMIAVGEETGQLSVLLGRVADFYEEEVATMTKGLSSILEPLLLIIVGITIGA 383 Query: 139 CVSTLVYFTS 148 V + Sbjct: 384 IVIAIYLPIF 393 >gi|330446856|ref|ZP_08310507.1| bacterial type II secretion system F domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491047|dbj|GAA05004.1| bacterial type II secretion system F domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 407 Score = 64.0 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 20/184 (10%), Positives = 51/184 (27%), Gaps = 6/184 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L K R +D + + +G+PV A+ ++ + R Q Sbjct: 57 LAKMRDQMKGEDITAVTRQLATMIESGVPVVQALQLMASSYN----KAEMRATLLQITTQ 112 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S + F + + G+L + A ++ + M+ KV+ Sbjct: 113 VESGASLSSAMRSSSPLFDKFYCDLVATGEQTGHLGQVFARIAVYREKNEAMRKKVKKAM 172 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRL 181 + + + V + +++ + + G + + Sbjct: 173 IYPSMVTLTAIVVTALMLIFVIPQFAQIFKGFGAELPIFTQVVILASDFLIAYGKYFIIV 232 Query: 182 MINF 185 + Sbjct: 233 IALI 236 >gi|24372011|ref|NP_716053.1| type IV pilus biogenesis protein PilC [Shewanella oneidensis MR-1] gi|24345872|gb|AAN53498.1|AE015489_11 type IV pilus biogenesis protein PilC [Shewanella oneidensis MR-1] Length = 423 Score = 64.0 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/172 (9%), Positives = 51/172 (29%), Gaps = 8/172 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMV 73 D I + AG+P+ + ++ E ++ G+ LS+++ Sbjct: 83 DIAMVTRQIATMLAAGVPLVTTIELLGRGHEKVKMRELLATILSEIQSGIPLSDALR--- 139 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G+L ++ + +K+K++ A + Sbjct: 140 --PHRRYFDDLYVDLVAAGEHSGSLDVVFDRIATYREKSEALKSKIKKAMFYPAAVVIVA 197 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183 + + V + ++L ++ + + ++ Sbjct: 198 ILVTALLLLFVVPQFEDIFKGFGAELPAFTQLVLQISRGLQSSWYIFLGAIV 249 >gi|331679033|ref|ZP_08379705.1| putative type II secretion protein [Escherichia coli H591] gi|331073098|gb|EGI44421.1| putative type II secretion protein [Escherichia coli H591] Length = 254 Score = 64.0 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + L+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQASGVYW 229 >gi|300711546|ref|YP_003737360.1| type IV pilus biogenesis complex membrane subunit [Halalkalicoccus jeotgali B3] gi|299125229|gb|ADJ15568.1| type IV pilus biogenesis complex membrane subunit [Halalkalicoccus jeotgali B3] Length = 669 Score = 64.0 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 20/153 (13%), Positives = 58/153 (37%), Gaps = 3/153 (1%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 + L + + G+ + +++ V+ SS P+ EF + G SL +S Sbjct: 449 RTAITGSLSDTLRKLSSANETGMTLLESIRVVAETSSGPLAREFEVIHAKVAYGTSLKDS 508 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 ++ + ++ +IS + ++ L ++ +R ++ + ++ + + Sbjct: 509 LTEFNNEYHIPRLARTVKLISKAQEASSQITAVLTTAAQASENRDEIERERRSRT---RM 565 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 II + ++ +++V+ G Sbjct: 566 QVVIILMTYLTLLAVMAILKTQFLDVMAGLDTG 598 Score = 39.7 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 22/178 (12%), Positives = 56/178 (31%), Gaps = 7/178 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQHL 61 + R + +++ + GL + + I + V EF+ ++ Sbjct: 136 RVSARKREIDMLLADSIAFMYALSVGGLNQLEILEAIANADDTYGEVSREFQSIVHETEY 195 Query: 62 G-LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +I R P +E+S F T + GG+++ + + ++ Sbjct: 196 FDTDYRSAIRTQARETPSEELSQFLTDMLSIVDSGGDMTRFFEDKKDKHMRTAKQQEELT 255 Query: 121 ALSMEAKASAWII----GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 ++E ++ L + ++ +L + L A +L+ Sbjct: 256 LETLELFGEMYMTLSLFPLLLIILLVIMSMLGEASEFMLYATVYALIPLVGAGFLVLV 313 >gi|256004306|ref|ZP_05429288.1| type II secretion system protein [Clostridium thermocellum DSM 2360] gi|281418014|ref|ZP_06249034.1| Type II secretion system F domain protein [Clostridium thermocellum JW20] gi|255991740|gb|EEU01840.1| type II secretion system protein [Clostridium thermocellum DSM 2360] gi|281409416|gb|EFB39674.1| Type II secretion system F domain protein [Clostridium thermocellum JW20] gi|316939950|gb|ADU73984.1| Type II secretion system F domain [Clostridium thermocellum DSM 1313] Length = 289 Score = 64.0 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 52/158 (32%), Gaps = 3/158 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIET 58 + + +R DFP+ L+ ++ V AG+ VS A V S + E R V+ Sbjct: 132 LSGKVNRRRLSIQLDFPDFLNKVILLVNAGMTVSRAWEKSVTDSEKDTVLYQELRTVLAD 191 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANL-SRILRDRKNMKA 117 G S + + + E++ F + + G ++ L + + + A Sbjct: 192 IRGGKSETSAFEDFANRCRIPEITKFVSALLQNLNKGNAEMVSILRLQAAECWEMRKHAA 251 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 K K ++ + + + Sbjct: 252 KRLGEEASTKMLFPMMLMFIAVILIVATPAVLTLTGSM 289 >gi|22127363|ref|NP_670786.1| hypothetical protein y3489 [Yersinia pestis KIM 10] gi|45442765|ref|NP_994304.1| hypothetical protein YP_3003 [Yersinia pestis biovar Microtus str. 91001] gi|108809095|ref|YP_653011.1| hypothetical protein YPA_3104 [Yersinia pestis Antiqua] gi|108810710|ref|YP_646477.1| hypothetical protein YPN_0545 [Yersinia pestis Nepal516] gi|145597782|ref|YP_001161858.1| hypothetical protein YPDSF_0472 [Yersinia pestis Pestoides F] gi|150260282|ref|ZP_01917010.1| putative type II secretion system integral membrane protein [Yersinia pestis CA88-4125] gi|162421097|ref|YP_001604880.1| hypothetical protein YpAngola_A0262 [Yersinia pestis Angola] gi|165925128|ref|ZP_02220960.1| type II secretion system protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165939890|ref|ZP_02228429.1| type II secretion system protein [Yersinia pestis biovar Orientalis str. IP275] gi|166009023|ref|ZP_02229921.1| type II secretion system protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166212095|ref|ZP_02238130.1| type II secretion system protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167419193|ref|ZP_02310946.1| type II secretion system protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425195|ref|ZP_02316948.1| type II secretion system protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466380|ref|ZP_02331084.1| type II secretion system protein [Yersinia pestis FV-1] gi|186896813|ref|YP_001873925.1| type II secretion system protein [Yersinia pseudotuberculosis PB1/+] gi|218927879|ref|YP_002345754.1| hypothetical protein YPO0688 [Yersinia pestis CO92] gi|229837370|ref|ZP_04457533.1| Type II/IV secretion system protein TadC,associated with Flp pilus assembly [Yersinia pestis Pestoides A] gi|229840582|ref|ZP_04460741.1| Type II/IV secretion system protein TadC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842868|ref|ZP_04463020.1| Type II/IV secretion system protein TadC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. India 195] gi|229900907|ref|ZP_04516031.1| Type II/IV secretion system protein TadC,associated with Flp pilus assembly [Yersinia pestis Nepal516] gi|270487717|ref|ZP_06204791.1| type II secretion system F domain protein [Yersinia pestis KIM D27] gi|294502754|ref|YP_003566816.1| hypothetical protein YPZ3_0644 [Yersinia pestis Z176003] gi|21960448|gb|AAM87037.1|AE013952_4 hypothetical [Yersinia pestis KIM 10] gi|45437631|gb|AAS63181.1| putative exported protein [Yersinia pestis biovar Microtus str. 91001] gi|108774358|gb|ABG16877.1| hypothetical protein YPN_0545 [Yersinia pestis Nepal516] gi|108781008|gb|ABG15066.1| hypothetical protein YPA_3104 [Yersinia pestis Antiqua] gi|115346490|emb|CAL19364.1| putative exported protein [Yersinia pestis CO92] gi|145209478|gb|ABP38885.1| hypothetical protein YPDSF_0472 [Yersinia pestis Pestoides F] gi|149289690|gb|EDM39767.1| putative type II secretion system integral membrane protein [Yersinia pestis CA88-4125] gi|162353912|gb|ABX87860.1| type II secretion system protein [Yersinia pestis Angola] gi|165912201|gb|EDR30839.1| type II secretion system protein [Yersinia pestis biovar Orientalis str. IP275] gi|165923328|gb|EDR40479.1| type II secretion system protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165992362|gb|EDR44663.1| type II secretion system protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166206841|gb|EDR51321.1| type II secretion system protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166963187|gb|EDR59208.1| type II secretion system protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167055958|gb|EDR65739.1| type II secretion system protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186699839|gb|ACC90468.1| type II secretion system protein [Yersinia pseudotuberculosis PB1/+] gi|229682246|gb|EEO78338.1| Type II/IV secretion system protein TadC,associated with Flp pilus assembly [Yersinia pestis Nepal516] gi|229690135|gb|EEO82192.1| Type II/IV secretion system protein TadC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. India 195] gi|229696948|gb|EEO86995.1| Type II/IV secretion system protein TadC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705493|gb|EEO91503.1| Type II/IV secretion system protein TadC,associated with Flp pilus assembly [Yersinia pestis Pestoides A] gi|262364731|gb|ACY61288.1| hypothetical protein YPD8_0598 [Yersinia pestis D182038] gi|270336221|gb|EFA46998.1| type II secretion system F domain protein [Yersinia pestis KIM D27] gi|294353213|gb|ADE63554.1| hypothetical protein YPZ3_0644 [Yersinia pestis Z176003] gi|320016749|gb|ADW00321.1| Type II/IV secretion system protein TadC,associated with Flp pilus assembly [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 277 Score = 64.0 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 4/157 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 +K+ + KRT L P +DI V++G+ + +++ + + + Sbjct: 117 IKNALTKRTNNLLKSLPFFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTK 176 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + L +I + Y P E+ F + + G + E L +LS+ +R+ + + + Sbjct: 177 RAEINGLENAIKELQYYSPAIEMKMFCSTLQYSISFGSTVYEQLTHLSQDMREMQLLMTE 236 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + K + + + LV SP + +L Sbjct: 237 ESISKLSTKLTLPLFLFILIPFVLLV--ISPSILELL 271 >gi|224283518|ref|ZP_03646840.1| Flp pilus assembly protein [Bifidobacterium bifidum NCIMB 41171] gi|310288221|ref|YP_003939480.1| conserved hypothetical membrane spanning protein [Bifidobacterium bifidum S17] gi|311065088|ref|YP_003971814.1| hypothetical protein BBPR_1760 [Bifidobacterium bifidum PRL2010] gi|309252158|gb|ADO53906.1| conserved hypothetical membrane spanning protein [Bifidobacterium bifidum S17] gi|310867408|gb|ADP36777.1| Conserved hypothetical protein, TadB-like protein [Bifidobacterium bifidum PRL2010] Length = 230 Score = 64.0 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 5/169 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + + SVRAG +SD +A + + L Sbjct: 58 LSGVIAHMSSSVRAGGMISDVLADV----DGSGFAGVPLTASRLKRLLMRQRMPGESAAQ 113 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + ++ + G +L++ L + R + + ++ +A+A ++G+ Sbjct: 114 AEHVAF-ELAVACAMCERSGCSLADCLDVVGENHRISRLLHDSRRSAFAVPRATAALLGA 172 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 LP L + VL +G+ L V A +G++ M M+ Sbjct: 173 LPLVTIGLGELLGARPVQVLFGSAQGNACLAVGGAGYALGLLWMSSMMR 221 >gi|222445846|ref|ZP_03608361.1| hypothetical protein METSMIALI_01490 [Methanobrevibacter smithii DSM 2375] gi|222435411|gb|EEE42576.1| hypothetical protein METSMIALI_01490 [Methanobrevibacter smithii DSM 2375] Length = 305 Score = 64.0 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 69/170 (40%), Gaps = 2/170 (1%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + P AL + ++AG + D + + + + EF+RV++ G S +++ M Sbjct: 132 ELPYALRHMATELKAGKGLHDTLLTVSIANYGSLSGEFKRVLKEIKYGKSSEDALMEMSL 191 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK--ASAWI 132 + + +S I ++GGNL+ +L ++ + +K K + + +I Sbjct: 192 RVSSEGLSRAVHQIVGTLRVGGNLANSLNVIAEDISFDMQIKLKEYSQKLNGFILIYTFI 251 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 P + ++ S +++ + M + ++ + ++ M Sbjct: 252 AILAPVIILIMLMAASTVVGDIVSGEMVFIMYMFFFPLIVVFMALFIKRM 301 >gi|116052559|ref|YP_792874.1| type 4 fimbrial biogenesis protein pilC [Pseudomonas aeruginosa UCBPP-PA14] gi|115587780|gb|ABJ13795.1| type 4 fimbrial biogenesis protein pilC [Pseudomonas aeruginosa UCBPP-PA14] Length = 373 Score = 64.0 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 21/169 (12%), Positives = 52/169 (30%), Gaps = 6/169 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + + AG+P+ + +I +R + + G SL+ S+ + Sbjct: 35 DIALFTRQMSTMMGAGVPLLQSFDIIGEGFENPNMRKLVDEIKQDVAAGNSLASSLRKKP 94 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G L L ++ +++KAK++ A + Sbjct: 95 -----IYFDDLYCNLVDAGEQSGALETLLDRVATYKEKTESLKAKIKKAMTYPIAVIVVA 149 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + V + + + + ML ++ L+ Sbjct: 150 LVVSAILLIKVVPQFQSVFANFGAELPAFTQMVINLSEMLQEWWLIVLI 198 Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 44/129 (34%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG+P+ +A+ + G + + V ++ + G+ L+ S+ Sbjct: 245 RTLSTTFAAGVPLVEALDSVSGATGNVVFKNAVTKIKQDVSSGMQLNFSMRT------TN 298 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + ++ + G+L E L ++ + + ME A + + Sbjct: 299 VFPSMAIQMAAIGEESGSLDEMLGKVAGFYEEEVDNAVDNLTTLMEPMIMAVLGVLVGGL 358 Query: 140 VSTLVYFTS 148 + + Sbjct: 359 IIAMYLPIF 367 >gi|109896564|ref|YP_659819.1| general secretion pathway protein F [Pseudoalteromonas atlantica T6c] gi|109698845|gb|ABG38765.1| general secretion pathway protein F [Pseudoalteromonas atlantica T6c] Length = 406 Score = 64.0 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 20/168 (11%), Positives = 58/168 (34%), Gaps = 8/168 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + V + LP+ +A+ + QS ++ V G +L+++++ Sbjct: 67 DLALLTRQLATLVESSLPIEEALMAVAQQSEKPRQKNMMMAVRSKVVEGYNLADAMAEFP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G+L L L+ R+ ++++ + + Sbjct: 127 -----HVFDELFRAMVAAGEKSGHLDTVLNRLADYTEKRQQTRSQITQAMVYPTLMMFFA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA--FMLIGIMVM 179 + + T+V G + + D + ++ + G++++ Sbjct: 182 MGIVILLLTVVVPKIVGQFDHMGQDLPTITKVLISVSEWMQNYGLLLI 229 >gi|171318825|ref|ZP_02907962.1| general secretion pathway protein F [Burkholderia ambifaria MEX-5] gi|171095966|gb|EDT40899.1| general secretion pathway protein F [Burkholderia ambifaria MEX-5] Length = 405 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 12/187 (6%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L R + + + AGLP+ +A+ V+ Q+ D +R + Sbjct: 55 QRLAFGRKLSQREQ-AILTRQLASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++ + R + + + G L L+ L+ + +K K+ Sbjct: 114 GGHSLANALGQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIMV 178 + V+ L+ + P +NV + + +L V A + Sbjct: 169 LAFTYPG---IVTLIAFGIVTFLLSYVVPQVVNVFASTKQQLPILTVVMMALSEFVRHWW 225 Query: 179 MRLMINF 185 ++I Sbjct: 226 WAILIAV 232 Score = 35.1 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ S+ I G +LS +++ + + P Sbjct: 274 FASTLGILTAAGVPILRALQAAGETLSNRAMRANIDDAIVRVREGSALSRALNNVKTFPP 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+++ L + + +E + G + Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAAEGEARELERRTMFLTSLLEPLLILAMGGIVL 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 VIVLAVMLPI 397 >gi|238759125|ref|ZP_04620294.1| Type II secretion system protein [Yersinia aldovae ATCC 35236] gi|238702673|gb|EEP95221.1| Type II secretion system protein [Yersinia aldovae ATCC 35236] Length = 273 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 63/157 (40%), Gaps = 4/157 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 +++++ K+ L P +DI V++G+ + +++ + +++ Sbjct: 113 IRNIVSKKIRTLLQSLPFFIDITAACVQSGMTIDSSLSYTAKKFKLINADLSLIMLKITK 172 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + L +I +Y E+ F + + G + + L LS+ +R+ + + + Sbjct: 173 RAEINGLENAIKEFQQYSTETEIKMFCSALQYSIIFGSTVYDQLIKLSQDMREMQLLVTE 232 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + +K + + + LV SP + +L Sbjct: 233 EKNSKLSSKLTLPLFVFILIPFVALV--ISPSVLELL 267 >gi|187933106|ref|YP_001887487.1| bacterial type II secretion system protein F [Clostridium botulinum B str. Eklund 17B] gi|187721259|gb|ACD22480.1| bacterial type II secretion system protein F [Clostridium botulinum B str. Eklund 17B] Length = 400 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 19/179 (10%), Positives = 54/179 (30%), Gaps = 12/179 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D + AG+P+ + ++ Q+++ E + +E + Sbjct: 62 KDLSIFCRQFYTMLDAGVPILTCLNILTSQTTNKKLQETLKEVEDDVEKGGV----LSDA 117 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + GNL + ++ + KV+ + + Sbjct: 118 MRKYTEVFPGLLVSLVAAGEASGNLDSIMLRMANHYEKENKVSNKVRNAMIYPI---ILG 174 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHM-----LLGVAAAFMLIGIMVMRLMINFDV 187 V ++ + P + ++ I LL +A+ M++ ++ + Sbjct: 175 LVAITAVVFILTYVMPTFTDLFIESGLNLPWSTKFLLWSSASLKAHWFMILLAIVGITI 233 Score = 37.8 bits (86), Expect = 0.75, Method: Composition-based stats. Identities = 16/145 (11%), Positives = 47/145 (32%), Gaps = 6/145 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + + + + +GLP+ A+ +++G + + + ++ + + Sbjct: 259 RRLNEMII-VSRFTRTLSTLLSSGLPLVQALDIVIGVIDNKIAEDAILKVKEKVVRGESL 317 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 S R P + + G+L + L + + + ME Sbjct: 318 NSSLRETEIFPQ-----MLYSMIKIGEETGSLDDILNKTADFYDEELESTIQTTVALMEP 372 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGY 151 + + F + +++ Y Sbjct: 373 ALIVIMGLIIGFIIISIMIPMFDSY 397 >gi|21227617|ref|NP_633539.1| transporter [Methanosarcina mazei Go1] gi|20906004|gb|AAM31211.1| Transporter [Methanosarcina mazei Go1] Length = 662 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 53/148 (35%), Gaps = 1/148 (0%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R K + P L + +GL +S+++ ++ + E +++ E G S S Sbjct: 444 RMRKIDERMPEMLRNLSSMNDSGLLLSNSLKIMAESKMGILSKELKKLKEDLSWGTSTSR 503 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS-MEA 126 ++ ++ + S + ++ +L L+ + ++ + +K + + + Sbjct: 504 ALMKLENNIRTATSSRILHTVIKANESTSDLKSVLSITAEQVKSEERLKKERSSEMVVYV 563 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154 F V L + P + Sbjct: 564 VTIYVSFFVFLFIVYVLAMYFFPESASF 591 Score = 42.8 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 13/149 (8%), Positives = 40/149 (26%), Gaps = 2/149 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQHLGLSL 65 R A A+ + + G+ + D + + E ++ Sbjct: 128 RKACIDKSMLPAVTYMYALTKGGMSIYDVFRSLSRHTHIFGTSAEEISYIVRDMDYLGKD 187 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + + + E + G ++ + N S +D M + +++ Sbjct: 188 FITALKEAKERTPSERFKDFVDGLILVSSSGTITGYIKNKSEQYQDMAEMANRNLLKTLD 247 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 A ++ + + + + Sbjct: 248 VLAEVYVTVLVAGPLFIMTTLIVLQFFRP 276 >gi|89074489|ref|ZP_01160966.1| putative general secretion pathway protein F [Photobacterium sp. SKA34] gi|89049777|gb|EAR55327.1| putative general secretion pathway protein F [Photobacterium sp. SKA34] Length = 408 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 58/167 (34%), Gaps = 11/167 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 ++ + V+A +P+ + + + Q+ +++ V G +L++S++ Sbjct: 67 TNELALITRQLATLVQASMPLEECIKAVAEQNEKPRLKNILLAVRSRVVEGYTLADSMAE 126 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + G+L L L+ +R+ M++K+Q + Sbjct: 127 YP-----HIFDQLFRAMVAAGEKSGHLDTILNRLADYTENRQQMRSKLQQAMIYPI---M 178 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + V+ L+ P ++ + G L + + V Sbjct: 179 LTLVAVSVVAFLLATVVPKIVDQFVQ--MGQQLPTITEVLLAASNFV 223 >gi|41615060|ref|NP_963558.1| hypothetical protein NEQ267 [Nanoarchaeum equitans Kin4-M] gi|40068784|gb|AAR39119.1| NEQ267 [Nanoarchaeum equitans Kin4-M] Length = 346 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 24/187 (12%), Positives = 72/187 (38%), Gaps = 8/187 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 +++I + +P+ L + SV +G+ + A+ + + R+++ Sbjct: 57 QYMIAREQKALESVYPSFLRDLAESVSSGISLIYALKLTANADYGALNKYLRKLVIWLSW 116 Query: 62 GLSLSESISRMVRYMPL-QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ +++ R +Y + + ++ + GG++ + L L+ + M + Sbjct: 117 GIPFPKAMERFNKYFYFSPAIRRANEILLEIYKSGGDIVKTLRLLAENIEKTSEMYKDI- 175 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML----LGVAAAFMLIGI 176 + K+ ++I + + + P + VL++ G + + M+I Sbjct: 176 --ISQVKSKVFVIYMIFLILVAIAVIIKPIFAEVLVSKIGGKGIDVSYFKFLSFLMVISF 233 Query: 177 MVMRLMI 183 + ++ Sbjct: 234 AISSSIM 240 >gi|289641000|ref|ZP_06473169.1| type II secretion system protein [Frankia symbiont of Datisca glomerata] gi|289509120|gb|EFD30050.1| type II secretion system protein [Frankia symbiont of Datisca glomerata] Length = 315 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 61/157 (38%), Gaps = 6/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R + L +FP +++ +V AG A+ + S + E R + Sbjct: 159 LTRAIREREERILIEFPTVAELLALAVTAGESPVGALERVSRLSHGELGRELRLALADAR 218 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +L +++ M + ++ F ++V + G L+E L + +R+ + Sbjct: 219 AGATLVQALEGMATRTTVPSLARFVDGMAVAIERGTPLAEVLRAQAVDVREAG------K 272 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 +EA I +P L + L++ Sbjct: 273 RQLLEAGGRKEIAMMVPVVFFVLPTTVIFAFYPALVS 309 >gi|269955831|ref|YP_003325620.1| type II secretion system protein [Xylanimonas cellulosilytica DSM 15894] gi|269304512|gb|ACZ30062.1| type II secretion system protein [Xylanimonas cellulosilytica DSM 15894] Length = 312 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 62/162 (38%), Gaps = 6/162 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I +R + + +FP +++ +V AG A+ + + + E RR + Sbjct: 157 LTRQISQREERMVAEFPTIAELLALAVTAGEAPISALERVAATARGELSVEIRRTLADVR 216 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++ +++ M L ++ F+ ++V + G L+E L ++ +R+ + Sbjct: 217 AGAPIALALTDMADRTGLPSLTRFAEGVAVALERGTPLAEVLRAQAQDVRESG------R 270 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162 MEA ++ +P L L G Sbjct: 271 RALMEAGGRKEVVMLVPVVFLILPITVVFAIYPSLATLRVGL 312 >gi|254507326|ref|ZP_05119462.1| general secretion pathway protein F [Vibrio parahaemolyticus 16] gi|219549786|gb|EED26775.1| general secretion pathway protein F [Vibrio parahaemolyticus 16] Length = 407 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 20/171 (11%), Positives = 50/171 (29%), Gaps = 6/171 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D + V++G+P+ + + + QS P + + Sbjct: 68 DLALITRQLATLVQSGMPLEECLKAVSEQSEKPRIRTMLLAVR----SKVVEGYTLADSL 123 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + G+L L L+ +R+ +++K+Q + Sbjct: 124 ADYPHIFDELFRSMVQAGEKSGHLDGVLERLADYAENRQKLRSKLQQAMIYPVVLVVFAV 183 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMI 183 + + V G + + LL + G+ ++ +I Sbjct: 184 GIVAFLLAAVVPKIVGQFVQMGQELPQSTQFLLASSDFIQHWGLQLLLAII 234 >gi|218246449|ref|YP_002371820.1| type II secretion system protein [Cyanothece sp. PCC 8801] gi|257059491|ref|YP_003137379.1| type II secretion system protein [Cyanothece sp. PCC 8802] gi|218166927|gb|ACK65664.1| type II secretion system protein [Cyanothece sp. PCC 8801] gi|256589657|gb|ACV00544.1| type II secretion system protein [Cyanothece sp. PCC 8802] Length = 404 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 58/166 (34%), Gaps = 10/166 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+ + + ++ Q+ + ++ + G+SLSE++ + Sbjct: 69 FSRQFSVMINAGVAIVRCLGILSEQASNPKLKKALGAISAEVQQGVSLSEAMGKHPEC-- 126 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++GG L E L LS++L D ++ ++++ + + Sbjct: 127 ---FDELYVSMVEAGEMGGVLDEVLNRLSKLLEDMARLQNQIKSAMAYPVTVGVLAVLVF 183 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 F ++ + L + + + GIM ++ Sbjct: 184 FGMTIFLIPVFAKIFEDLGAELP----MLTQIMLNISGIMRSWKIL 225 Score = 37.8 bits (86), Expect = 0.65, Method: Composition-based stats. Identities = 13/134 (9%), Positives = 39/134 (29%), Gaps = 7/134 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + R+G+P+ ++ ++ + + + G +S ++ R Sbjct: 273 FCRVFGTLTRSGVPILSSLEIVCNTVGNKVIANAIDAAKSEIQQGGMMSLALQRA----- 327 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L + ++ D K +E I G + Sbjct: 328 -NVFPQLAIQMISIGEETGELDAMMMKVADFYEDEVEQAIKAMTSMLEPLMMVGIAGMVG 386 Query: 138 FCVSTLVYFTSPGY 151 + ++ + Sbjct: 387 VILLSMYLPMFKIF 400 >gi|323497016|ref|ZP_08102039.1| general secretion pathway protein F [Vibrio sinaloensis DSM 21326] gi|323317860|gb|EGA70848.1| general secretion pathway protein F [Vibrio sinaloensis DSM 21326] Length = 407 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 17/149 (11%), Positives = 45/149 (30%), Gaps = 7/149 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D + V++G+P+ + + + QS P + + Sbjct: 68 DLALITRQLATLVQSGMPLEECLRAVSEQSEKPRIRTMLLAVR----SKVVEGYTLADSL 123 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + G+L L L+ +R+ +++K+Q + ++ Sbjct: 124 ADYPHIFDELFRSMVQAGEKSGHLDGVLERLADYAENRQKLRSKLQQAMIYPV---VLVV 180 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 V+ L+ P + + + Sbjct: 181 FAVGIVAFLLAAVVPKIVGQFVQMGQELP 209 >gi|264676753|ref|YP_003276659.1| general secretion pathway protein F [Comamonas testosteroni CNB-2] gi|262207265|gb|ACY31363.1| general secretion pathway protein F [Comamonas testosteroni CNB-2] Length = 407 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 61/174 (35%), Gaps = 14/174 (8%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74 + V +GLP+ A+A + ++ D + + G S + ++ + R Sbjct: 70 LAVWTRQLSGLVSSGLPIERALAALSEEAEDERQHQLVAALRAEVNAGSSFARALEQHPR 129 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 E S + + G+L L NL+ L R+ +++K+ S+ + Sbjct: 130 -----EFSDIFCAVIGAGESSGSLGPVLENLADDLEARQALQSKLIGASLYPA---IVTL 181 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-----IGIMVMRLMI 183 V LV + P V R L V + G ++ +++ Sbjct: 182 VAIVIVIFLVSYVVPQVAGVFAGTKRALPFLTVVMLGISDFVRHYGWFMLAVLL 235 Score = 35.5 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 15/129 (11%), Positives = 33/129 (25%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ A+ ++ R L L + Sbjct: 276 FAGTLAMLAGAGVPILKALQAAAETLNNR----ALRADAMDALVLVREGAPLASALAQKK 331 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + + G L L + L +A A +E + + Sbjct: 332 R-FPGLVAMFARLGEQTGQLPLMLQRAATQLSTEVQRRAMHLATILEPLLIVVMGLVVML 390 Query: 139 CVSTLVYFT 147 V ++ Sbjct: 391 IVLAVLMPI 399 >gi|215432631|ref|ZP_03430550.1| transmembrane protein [Mycobacterium tuberculosis EAS054] Length = 167 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 1/163 (0%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ-EV 81 +V +RAG A ++ ++ PV R V LG ++ + R L Sbjct: 1 MVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAARSSALPAYW 60 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + S G ++ + R + +R+ A+V A A+ASA I+ LP Sbjct: 61 ERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGV 120 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L ++ L+ G LL V G++ + + Sbjct: 121 LLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITD 163 >gi|84386792|ref|ZP_00989817.1| putative type IV pilus protein [Vibrio splendidus 12B01] gi|84378320|gb|EAP95178.1| putative type IV pilus protein [Vibrio splendidus 12B01] Length = 283 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 64/165 (38%), Gaps = 6/165 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + + + P+A+D++V V +GL + + + S + E+ Sbjct: 122 LDWRVNQVRMQISRVIPDAVDLMVVCVASGLTLEAVFRCVGEEMRAISPALSREWLLTAT 181 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + S ++S + + + L +++ T ++ Q G L+EAL ++ R ++ Sbjct: 182 EISVLDSPQTALSNLDKRVQLPDINNIVTTMNQALQYGTPLAEALKLIASDSRQYHFLEL 241 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162 + + AK S ++ + V ++ M L G Sbjct: 242 EEWVGKIPAKMSFPLVVFIMLPVVGIIVV---PIMLSLKQTLGGL 283 >gi|158333616|ref|YP_001514788.1| type II secretion system domain-containing protein/ pilin biogenesis protein PilC [Acaryochloris marina MBIC11017] gi|158303857|gb|ABW25474.1| type II secretion system domain protein/ pilin biogenesis protein PilC [Acaryochloris marina MBIC11017] Length = 406 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 51/150 (34%), Gaps = 6/150 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 V AG+ + + V+ Q + ++ V G+SLS+++ Sbjct: 70 FSRQFSALVNAGVALVRGLGVMSEQCKNPKLKKALLDVNAAVQQGVSLSDAMRGHPAA-- 127 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + GG L E L L+ +L D+ +K ++++ +I S+ Sbjct: 128 ---FDQLYVAMIQAGETGGVLDEVLNRLATLLEDQARLKNQIRSALAYPVVVGFIAVSIF 184 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 + + G + L D V Sbjct: 185 LGMVIFLIPVFDGIFSQLGGDLPAFTQFMV 214 Score = 38.2 bits (87), Expect = 0.59, Method: Composition-based stats. Identities = 16/134 (11%), Positives = 41/134 (30%), Gaps = 7/134 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 R+G+P+ ++ ++ + + V S G LS ++ + Sbjct: 275 FCRTFGSLSRSGVPILYSLEIVRDTAGNQVVSNAIDEARREIQGGGMLSLALQK------ 328 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + +T + + G + + L ++ D K ME + G + Sbjct: 329 EKVFPLLATQMINVGEETGEIDKMLMKVADFYEDEVEQAVKAMTSVMEPLMIVVLGGMVG 388 Query: 138 FCVSTLVYFTSPGY 151 + + + Sbjct: 389 SILVAMYLPMFKIF 402 >gi|71275174|ref|ZP_00651461.1| type II secretion system protein [Xylella fastidiosa Dixon] gi|170731165|ref|YP_001776598.1| fimbrial assembly protein [Xylella fastidiosa M12] gi|71163983|gb|EAO13698.1| type II secretion system protein [Xylella fastidiosa Dixon] gi|167965958|gb|ACA12968.1| fimbrial assembly protein [Xylella fastidiosa M12] Length = 463 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 52/166 (31%), Gaps = 6/166 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + ++AG+P+ A+ ++ Q + +R+ ++ G SL ESIS+ Sbjct: 123 KDIAFFSRQMATMMKAGVPIVGALDILANGQKNPRMRTMVNQIKNDIEGGSSLYESISKH 182 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L ++ + + +K K++ A + Sbjct: 183 P-----VYFDELYRNLVRAGERAGVLETVLDTIASYKENIEALKGKIRKALFYPVAIVAV 237 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + V + + V + + Sbjct: 238 ALIVSSILLIYVVPQFEDVFKGFGAELPAFTQMIVNFSNFMQRWWW 283 Score = 37.8 bits (86), Expect = 0.63, Method: Composition-based stats. Identities = 16/136 (11%), Positives = 44/136 (32%), Gaps = 5/136 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + RAG+P+ +A+ ++ G + + + + +S+ SI+ Sbjct: 326 NSALARFSRTTAVTFRAGVPLVEALGIVAGATGN---KVYSDAVFRMRDDVSVGYSINMS 382 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 +R + + ++ + G L L ++ + + +E +I Sbjct: 383 MRQVGI--FPHMVVQMASIGEEAGALDAMLFKVAEYYEQEVSNAVDGLSSLLEPLIMVFI 440 Query: 133 IGSLPFCVSTLVYFTS 148 + V + Sbjct: 441 GVIVGGMVIAMYLPIF 456 >gi|78486064|ref|YP_391989.1| type II secretion system protein [Thiomicrospira crunogena XCL-2] gi|78364350|gb|ABB42315.1| Flp (type IV) pilus assembly protein, TadB homolog [Thiomicrospira crunogena XCL-2] Length = 296 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 58/141 (41%), Gaps = 3/141 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLS 64 R K P+ LD+ + AGL +A+ + + + EF +IE +G+ Sbjct: 145 RLNKVNIALPDFLDMANICMSAGLSYLEAIKRVSKELESTFPEICYEFNFLIEQIKIGVP 204 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 E++ + P +++ ++ +LG +S AL SR + ++ + +A Sbjct: 205 RQEALKQFALRNPSKDIQDLVQMLIQNEKLGSPISTALNEFSRRMYQKRESAMEEKAAKT 264 Query: 125 EAKASAWIIGSLPFCVSTLVY 145 AK + I+ L L+ Sbjct: 265 SAKMAIVILPFLMLPYFMLML 285 >gi|317131788|ref|YP_004091102.1| Type II secretion system F domain [Ethanoligenens harbinense YUAN-3] gi|315469767|gb|ADU26371.1| Type II secretion system F domain [Ethanoligenens harbinense YUAN-3] Length = 403 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 20/180 (11%), Positives = 56/180 (31%), Gaps = 7/180 (3%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSE 67 L D + +GL V + ++ Q+ +++ V E G SLS+ Sbjct: 57 KKIKLKDLSIFCRQFSTMLNSGLSVIKCLDILYQQTTKKNIKAIVLGVYEAVQRGESLSK 116 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +++ + + G L + ++ ++ KV+ + Sbjct: 117 AMAL------QDAFPELLLNMVAAGEASGTLDTVMNRMATQYEKDNKLQNKVKQAMVYPI 170 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + ++ + T + T + + ++ + + G + ++ V Sbjct: 171 FLVCMSVAVVIFLLTFIMPTFLKMFDQFGGKIPTTTKILLSISNAMTGYWYLFIIGVIAV 230 Score = 40.5 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 44/134 (32%), Gaps = 7/134 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + +GLP+ ++ ++ + + E G+S+S SI ++ Sbjct: 269 FARTLASLFSSGLPIIQSIEIVTRVIKNTYVKAGLLQATEDVRRGVSISGSIRKL----- 323 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + GN+ E L + D + + +E + + Sbjct: 324 -EIFPVMLCSMLNIGEESGNMDEILNKTAAFYDDEADTAIQQMVSLIEPIMIVVLALIVG 382 Query: 138 FCVSTLVYFTSPGY 151 F + +++ Y Sbjct: 383 FIIVSIITPIYSVY 396 >gi|315231663|ref|YP_004072099.1| hypothetical protein TERMP_01901 [Thermococcus barophilus MP] gi|315184691|gb|ADT84876.1| hypothetical protein TERMP_01901 [Thermococcus barophilus MP] Length = 302 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 52/144 (36%), Gaps = 1/144 (0%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 I KR P+A + S+RAG+ S+A+ + + EFR+ + G Sbjct: 83 WRIVKRIEDMEQMLPDAFFYLASSLRAGISFSEALEELTTAKFGALTEEFRKTVAEIKKG 142 Query: 63 LSLSESISRMV-RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 E++ R + +I + G +++ L ++ +R+ +K + +A Sbjct: 143 RPTVEALKAFALRNKKSPVIYRSMMIIIEALERGAPMADVLVSVGNDVREILRIKKERKA 202 Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145 + I + V Sbjct: 203 STGMQTMFFIIASGFVGPLILGVV 226 >gi|300741822|ref|ZP_07071843.1| putative type II secretion system protein F domain protein [Rothia dentocariosa M567] gi|300381007|gb|EFJ77569.1| putative type II secretion system protein F domain protein [Rothia dentocariosa M567] Length = 310 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 61/156 (39%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +I +R + + +FP +++ SV AG ++ I S + EF ++ Sbjct: 155 LGQIIVRREKQLIAEFPALAEMMALSVAAGESALASLERICRTSRGELAREFNDILAQTR 214 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL +++ + + +S F ++V + G L++ L ++ +RD + Sbjct: 215 AGSSLLAALNEFAQSTQIPALSRFVDGVAVAIERGTPLADVLRAQAQDVRDNAKRELLEV 274 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 A E A ++ + F M + Sbjct: 275 AGKKEIAMLAPVVFLILPLTVVFAIFPGLSLMKLAF 310 >gi|311111713|ref|YP_003982935.1| type II secretion system protein [Rothia dentocariosa ATCC 17931] gi|310943207|gb|ADP39501.1| type II secretion system protein [Rothia dentocariosa ATCC 17931] Length = 310 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 61/156 (39%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +I +R + + +FP +++ SV AG ++ I S + EF ++ Sbjct: 155 LGQIIVRREKQLIAEFPALAEMMALSVAAGESALASLERICRTSRGELAREFNDILAQTR 214 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL +++ + + +S F ++V + G L++ L ++ +RD + Sbjct: 215 AGSSLLAALNEFAQSTQIPALSRFVDGVAVAIERGTPLADVLRAQAQDVRDNAKRELLEV 274 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 A E A ++ + F M + Sbjct: 275 AGKKEIAMLAPVVFLILPLTVVFAIFPGLSLMKLAF 310 >gi|9107745|gb|AAF85335.1|AE004060_10 fimbrial assembly protein [Xylella fastidiosa 9a5c] Length = 490 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 52/166 (31%), Gaps = 6/166 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + ++AG+P+ A+ ++ Q + +R+ ++ G SL ESIS+ Sbjct: 150 KDIAFFSRQMATMMKAGVPIVGALDILANGQKNPRMRTMVNQIKNDIEGGSSLYESISKH 209 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L ++ + + +K K++ A + Sbjct: 210 P-----VYFDELYRNLVRAGERAGVLETVLDTIASYKENIEALKGKIRKALFYPVAIVAV 264 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + V + + V + + Sbjct: 265 ALIVSSILLIYVVPQFEDVFKGFGAELPAFTQMIVNFSNFMQRWWW 310 Score = 37.8 bits (86), Expect = 0.68, Method: Composition-based stats. Identities = 16/136 (11%), Positives = 44/136 (32%), Gaps = 5/136 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + RAG+P+ +A+ ++ G + + + + +S+ SI+ Sbjct: 353 NSALARFSRTTAVTFRAGVPLVEALGIVAGATGN---KVYSDAVFRMRDDVSVGYSINMS 409 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 +R + + ++ + G L L ++ + + +E +I Sbjct: 410 MRQVGI--FPHMVVQMASIGEEAGALDAMLFKVAEYYEQEVSNAVDGLSSLLEPLIMVFI 467 Query: 133 IGSLPFCVSTLVYFTS 148 + V + Sbjct: 468 GVIVGGMVIAMYLPIF 483 >gi|170700844|ref|ZP_02891833.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] gi|170134252|gb|EDT02591.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] Length = 324 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 68/162 (41%), Gaps = 4/162 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + I R +DFP+ALD++ V AGL + A+ + + S+ V E ++ Sbjct: 157 LTRRIATRQRVIFEDFPDALDLLTVCVEAGLGLDAALMRVSEELRFRSEVVSGELDLLLL 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ +++ F ++ + G +++E+L LS +LR R+ M+A Sbjct: 217 EMRSGFTKETALRNFALRTGTEDIESFCAMLIQADRFGTSIAESLRVLSDMLRTRRRMRA 276 Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158 + +A + I P + L+ VL+ Sbjct: 277 EERAAKIALKLLFPLIFCIFPALMCVLLGPAMIHVYRVLLPS 318 >gi|218441093|ref|YP_002379422.1| type II secretion system protein [Cyanothece sp. PCC 7424] gi|218173821|gb|ACK72554.1| type II secretion system protein [Cyanothece sp. PCC 7424] Length = 404 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 57/167 (34%), Gaps = 12/167 (7%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+ + + V+ QS + ++ + G LS+++ + Sbjct: 69 FSRQFSVMINAGVAIVRCLGVLSDQSGNKKLKKALASISADVQQGSPLSDAMGKHPDC-- 126 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + GG L E L L+++L D ++ ++++ A + + Sbjct: 127 ---FDQLYVSMIEAGETGGVLDEVLDRLAKLLEDMARLQNQIKSAMAYPVAVGMLAVIVF 183 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVA-AAFMLIGIMVMRLMI 183 F ++ + L G L + L GIM ++ Sbjct: 184 FAMTIFLIPVFAKIFQDL-----GVPLPALTQFMLFLSGIMRSWKIL 225 Score = 38.9 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 14/134 (10%), Positives = 40/134 (29%), Gaps = 7/134 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + R+G+P+ ++ ++ + + + I G +S +I + Sbjct: 273 FCRVFGTLTRSGVPILSSLDIVCNTVGNKVISNAVAGAIAEIQQGGMMSIAIQKA----- 327 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L + ++ D K +E I G + Sbjct: 328 -NVFPALAIQMISIGEETGELDAMMMKVADFYEDEVEQAVKALTSVIEPLMMVAIAGMVG 386 Query: 138 FCVSTLVYFTSPGY 151 + ++ + Sbjct: 387 TILLSMYLPMFAVF 400 >gi|182682542|ref|YP_001830702.1| type II secretion system protein [Xylella fastidiosa M23] gi|182632652|gb|ACB93428.1| type II secretion system protein [Xylella fastidiosa M23] gi|307578820|gb|ADN62789.1| type II secretion system protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 463 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 52/166 (31%), Gaps = 6/166 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + ++AG+P+ A+ ++ Q + +R+ ++ G SL ESIS+ Sbjct: 123 KDIAFFSRQMATMMKAGVPIVGALDILANGQKNPRMRTMVNQIKNDIEGGSSLYESISKH 182 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L ++ + + +K K++ A + Sbjct: 183 P-----VYFDELYRNLVRAGERAGVLETVLDTVASYKENIEALKGKIRKALFYPVAIVAV 237 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + V + + V + + Sbjct: 238 ALIVSSILLIYVVPQFEDVFKGFGAELPAFTQMIVNFSNFMQRWWW 283 Score = 38.2 bits (87), Expect = 0.56, Method: Composition-based stats. Identities = 16/136 (11%), Positives = 44/136 (32%), Gaps = 5/136 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + RAG+P+ +A+ ++ G + + + + +S+ SI+ Sbjct: 326 NSALARFSRTTAVTFRAGVPLVEALGIVAGATGN---KVYSDAVFRMRDDVSVGYSINMS 382 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 +R + + ++ + G L L ++ + + +E +I Sbjct: 383 MRQVGI--FPHMVVQMASIGEEAGALDAMLFKVAEYYEQEVSNAVDGLSSLLEPLIMVFI 440 Query: 133 IGSLPFCVSTLVYFTS 148 + V + Sbjct: 441 GVIVGGMVIAMYLPIF 456 >gi|229588337|ref|YP_002870456.1| type IV fimbrial assembly protein [Pseudomonas fluorescens SBW25] gi|229360203|emb|CAY47060.1| type IV fimbrial assembly protein [Pseudomonas fluorescens SBW25] Length = 383 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 15/170 (8%), Positives = 44/170 (25%), Gaps = 4/170 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + ++AG+P+ A +I E + ++ + Sbjct: 43 SADITLLTRQLATLLKAGIPLLQAFDIIGEGFESRPVRELVQGLKQAIAAGT----SLAE 98 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G L L ++ + ++A+++ A + Sbjct: 99 ALRKQPRYFDELYCNLVAAGEQAGALETLLERVAIHREKSEQLRARIKKAMTYPIAVLVV 158 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + V + L +A + + + Sbjct: 159 ASLVTGVLLIQVVPQFQSLFAGVDGKLPEFTLQVIALSEFTQKAWWVVAL 208 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 43/129 (33%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG+P+ A+ + G + S P R + G+ L++S++ + + Sbjct: 255 RTLSTTFAAGVPLVQALDSVAGAAGSGPFRQAIEHMRHDVSTGMQLNQSMAASGLFPGM- 313 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + ++ + G L L ++ + ME + G + Sbjct: 314 -----AIQMTAIGEESGTLDRMLEKVANHYEADVDNLVDNLTSLMEPLIMVVLGGIVGAL 368 Query: 140 VSTLVYFTS 148 V + Sbjct: 369 VIAMYLPVF 377 >gi|220915777|ref|YP_002491081.1| type II secretion system protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219953631|gb|ACL64015.1| type II secretion system protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 417 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 50/168 (29%), Gaps = 4/168 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + AGLP+ A+ +I Q+ +P EFRRV+ T + + S S Sbjct: 77 TKDLLVFTRQFSVMIDAGLPLVQALDIIATQADNP---EFRRVLSTVKVKVE-SGSTFAD 132 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + ++GG L L L + + + +V+ + + Sbjct: 133 ALGEHPKVFDELFVQLVRAGEIGGILDTILQRLGAYIEKNEKLSRRVKGAMVYPAIVLTV 192 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + V T + + + Sbjct: 193 AVGVVAVLIAFVVPTFEKMFKDFGGAMPAPTQFLIDISHGFRNYWFVY 240 Score = 41.3 bits (95), Expect = 0.070, Method: Composition-based stats. Identities = 12/130 (9%), Positives = 40/130 (30%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+P+ DA+ ++ + + + +SE + Sbjct: 286 FTRTLGTMLSSGVPILDALEIVAKSAGNRTIERGILYVR-----AKISEGKNIAGPLAET 340 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G + L ++ D ++ +E ++ G++ F Sbjct: 341 KVFPAMVVQMIGVGEATGAMDAMLNKIADFYDDEVDVAVGALTSMIEPLMMVFLGGTVGF 400 Query: 139 CVSTLVYFTS 148 + + Sbjct: 401 FMIAMYMPIF 410 >gi|170729051|ref|YP_001763077.1| general secretion pathway protein F [Shewanella woodyi ATCC 51908] gi|169814398|gb|ACA88982.1| general secretion pathway protein F [Shewanella woodyi ATCC 51908] Length = 407 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 61/169 (36%), Gaps = 8/169 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 + I V AGLPV +A+ + Q D + S V G +L++S++ Sbjct: 67 AELALITRQIATLVAAGLPVEEALKAVGQQCEKDRLASMIMAVRSRVVEGYNLADSMAEF 126 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G+L L L+ R+ +K+K+ + + Sbjct: 127 P-----HIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKMTQAMIYPVVLTVV 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML--IGIMVM 179 S+ + V G + + LL +A++ + GI+++ Sbjct: 182 AISVIAILLAAVVPQVVGQFEHMGQELPWTTLLLIASSDFIRDYGIIIL 230 >gi|238790284|ref|ZP_04634058.1| Flp pilus assembly protein TadC [Yersinia frederiksenii ATCC 33641] gi|238721634|gb|EEQ13300.1| Flp pilus assembly protein TadC [Yersinia frederiksenii ATCC 33641] Length = 282 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 67/156 (42%), Gaps = 4/156 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQ 59 K+++ R K D P +D++ V++GL + ++ + + F + + Sbjct: 126 KYIVNARIEKIERDMPLFVDLLAICVQSGLTIESSLKFLAENVGDINDNFVPFLDRLVKK 185 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 L ++ + + +P +EVS + + G ++ E L LS +R+ + +K + Sbjct: 186 IEVNGLEAGLTHLQKELPSREVSMLCVTLQQSLRYGSSIYEYLMELSSEMRELQLLKTEE 245 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + AK S ++ F V ++ PG M V+ Sbjct: 246 IIGKLSAKMSIPLVLFFMFPVVIIIAA--PGIMRVM 279 >gi|138896194|ref|YP_001126647.1| PilC II secretion system protein [Geobacillus thermodenitrificans NG80-2] gi|134267707|gb|ABO67902.1| PilC, bacterial type II secretion system protein [Geobacillus thermodenitrificans NG80-2] Length = 403 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 54/171 (31%), Gaps = 6/171 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 F L VRAG+ + D+V ++ Q+ + + ++ G LS + +R Sbjct: 63 QHFVIFLRQFATLVRAGVTIVDSVHILAEQTESKSLARALSDIEQSLRGGNPLSTAAARH 122 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R P + + G L E L L+ + K+ + A A I Sbjct: 123 PRLFP-----SLFVNMVRAGEASGTLDETLDRLADHFEKMHRTRQKIVSALAYPIAIAII 177 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 ++ + V + + + ++ +++ Sbjct: 178 ATAVVIFLLVAVVPAFVEMFADFHAELPAITKFVLKTSDVMQHYWWAMVLL 228 >gi|309778765|ref|ZP_07673538.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA] gi|308922473|gb|EFP68097.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA] Length = 329 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 63/147 (42%), Gaps = 5/147 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLSES 68 D+ P +D++ GL + ++ VI + + EF R + G ++ Sbjct: 176 MDDELPVMVDMLRLLQGVGLSIDQSLQVIANEFHGMLPVLAGEFGRANQQFASGRPREQT 235 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + R+ R +++ T+++ + GG + E L L++ + + K + + + Sbjct: 236 LLRIARLFDNEDLKGLITLLTQVDRFGGAVQEPLRQFGGRLQENRRARLKERVGKLTVQM 295 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + ++ +L + L+ PG+M V+ Sbjct: 296 TMIMVMTLLPAL--LIITAGPGFMGVM 320 >gi|167044731|gb|ABZ09401.1| putative bacterial type II secretion system protein F domain protein [uncultured marine microorganism HF4000_APKG7N23] Length = 191 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 71/185 (38%), Gaps = 3/185 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +K R A + A+ I + +G+ V++A+ I + + FR++ G + Sbjct: 1 MKSRLASVDQELLYAIRAIEVLLESGVGVAEAMKHIADEDYGDLSVIFRQIFADTDSGRN 60 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 S+++ +R + + + + + N+ + L +++ + M+ + Sbjct: 61 FSDAMRTQMRSTDSAGLRKVLSSLIMSMEEDTNVIDRLRSIAEREAKERRMELDGFIEGL 120 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMN---VLINDPRGHMLLGVAAAFMLIGIMVMRL 181 A +I S+ + ++ M + + V +F++ G+ + L Sbjct: 121 AGTAEFFIALSILLPLIVVIAAVISSIMEGAGAIFGGGMTMPPICVPVSFLVTGLGLAGL 180 Query: 182 MINFD 186 ++N Sbjct: 181 IVNTK 185 >gi|117619869|ref|YP_855104.1| general secretion pathway protein F [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561276|gb|ABK38224.1| general secretion pathway protein F [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 406 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 49/162 (30%), Gaps = 6/162 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66 R + + V AGL + +A+ + Q +RS V G SL+ Sbjct: 60 RRGASTAELAMITRQLATLVGAGLTIEEALKAVAEQCEKAHLRSMVATVRSKVVEGYSLA 119 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S++ + + G+L + L L+ R++M+ K+ + Sbjct: 120 DSLAAFP-----HVFDQLFRSMVAAGEKSGHLEKVLNRLADYTEQRQHMRTKLLQAMIYP 174 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168 + + + T V + + Sbjct: 175 IVLTCVAIGVISILLTAVVPKVVAQFEHMGQQLPATTRFLIG 216 >gi|254238815|ref|ZP_04932138.1| pilin biogenesis protein pilC [Pseudomonas aeruginosa C3719] gi|126170746|gb|EAZ56257.1| pilin biogenesis protein pilC [Pseudomonas aeruginosa C3719] Length = 405 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 20/169 (11%), Positives = 52/169 (30%), Gaps = 6/169 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + + AG+P+ + +I +R + + G SL+ S+ + Sbjct: 67 DIALFTRQMSTMMGAGVPLLQSFDIIGEGFENPNMRKLVDEIKQDVAAGNSLASSLRKKP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G L L ++ +++KAK++ A + Sbjct: 127 -----IYFDDLYCNLVDAGEQSGALETLLDRVATYKEKTESLKAKIKKAMTYPIAVIVVA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + V + + + + +L ++ L+ Sbjct: 182 LVVSAILLIKVVPQFQSVFANFGAELPAFTQMVINLSEILQEWWLIVLI 230 Score = 37.8 bits (86), Expect = 0.63, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 44/129 (34%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG+P+ +A+ + G + + V ++ + G+ L+ S+ Sbjct: 277 RTLSTTFAAGVPLVEALDSVSGATGNVVFKNAVTKIKQDVSSGMQLNFSMRT------TN 330 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + ++ + G+L E L ++ + + ME A + + Sbjct: 331 VFPSMAIQMAAIGEESGSLDEMLGKVAGFYEEEVDNAVDNLTTLMEPMIMAVLGVLVGGL 390 Query: 140 VSTLVYFTS 148 + + Sbjct: 391 IIAMYLPIF 399 >gi|42523018|ref|NP_968398.1| pilC; type II secretion system protein [Bdellovibrio bacteriovorus HD100] gi|39575223|emb|CAE79391.1| pilC; bacterial type II secretion system protein [Bdellovibrio bacteriovorus HD100] Length = 405 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 20/158 (12%), Positives = 53/158 (33%), Gaps = 9/158 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRM 72 D + AG+PV D++ ++ ++ +V + G L++S++++ Sbjct: 66 KDLQIFTRQFATLINAGIPVVDSLKILSEGLRPGLLKEASAQVKTSIEGGRRLADSMAQV 125 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L L+ + + +KA+V+ + + Sbjct: 126 PN-----VFDKLYVNMIQAGEEAGILDGILQRLASYMEKSEKIKAQVKGALVYPMVIIVV 180 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + + + P +M + +L + Sbjct: 181 AMIVIAGILVFII---PKFMEFFAGSGKEPPMLTLMVV 215 Score = 43.6 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 11/134 (8%), Positives = 34/134 (25%), Gaps = 5/134 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + + +G+ + +A+ + + V E + + + + + Sbjct: 270 AIARLTRTLSTLLSSGVGLIEAIEISAKTA-GNVVIEQSLLRCKESVTAGRTFASPLAKE 328 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + G + L ++ D K +E + G Sbjct: 329 KA----FPEMVVQMISIGEQSGTMDIMLGKIADFYEDEVETAVKAMTSLLEPLLMVVLGG 384 Query: 135 SLPFCVSTLVYFTS 148 + V + Sbjct: 385 IIAVLVVAMYLPIF 398 >gi|182418624|ref|ZP_02949901.1| bacterial type II secretion system protein F [Clostridium butyricum 5521] gi|237669077|ref|ZP_04529061.1| type II secretion system protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377486|gb|EDT75040.1| bacterial type II secretion system protein F [Clostridium butyricum 5521] gi|237657425|gb|EEP54981.1| type II secretion system protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 400 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 18/173 (10%), Positives = 49/173 (28%), Gaps = 6/173 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRM 72 D + AG+P+ + ++ Q + E +V E G LS+++ + Sbjct: 62 KDLSIFCRQFYTMLDAGVPILTCLKILSDQIQNKKLKEAIVKVNEDVETGEVLSDAMRK- 120 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 ++ + G+L + ++ + KV+ + ++ Sbjct: 121 ----HKDVFPDLLVSLTASGEASGSLDSVMLRMATHYEKENKINNKVKNAMIYPIVLGFV 176 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + V T + + + ++ L + Sbjct: 177 SVVAVTFILVYVMPTFMQIFEESGTQLPWSTKFLLGLSSGIQNNWIVMLFVLI 229 Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 13/136 (9%), Positives = 39/136 (28%), Gaps = 5/136 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +GL + A+ ++ + + I+ + S + P Sbjct: 270 FTRTLSILMASGLSLIKALEIVSEVVGNKIVENAMIKIKDSVMRGDSLYSSMKESNMFPP 329 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G+L + L + + + +E + + F Sbjct: 330 -----MLYSMIKVGEETGSLDDILNKTADFYDEELETTIQTSVALLEPILIVIMGLIIAF 384 Query: 139 CVSTLVYFTSPGYMNV 154 V +++ Y + Sbjct: 385 IVISVMLPMFDTYTQI 400 >gi|167824262|ref|ZP_02455733.1| bacterial type II secretion system protein F domain [Burkholderia pseudomallei 9] gi|167919042|ref|ZP_02506133.1| bacterial type II secretion system protein F domain [Burkholderia pseudomallei BCC215] Length = 246 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + ++ +R P+ALD++V AG ++ A+ + + P+ EF + Sbjct: 86 LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 145 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + +++ M + L + T + Q G ++++L LSR R + + Sbjct: 146 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 205 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K + ++ + V+ + Sbjct: 206 EEKAAKLAPKMTLPMMLFVMPTVALI 231 >gi|197121075|ref|YP_002133026.1| type II secretion system protein [Anaeromyxobacter sp. K] gi|196170924|gb|ACG71897.1| type II secretion system protein [Anaeromyxobacter sp. K] Length = 417 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 19/169 (11%), Positives = 46/169 (27%), Gaps = 6/169 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 D + AGLP+ A+ +I Q+ + R V G + ++++ Sbjct: 77 TKDLLVFTRQFSVMIDAGLPLVQALDIIATQADNAEFRKVLSTVKVKVESGSTFADALGE 136 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + ++GG L L L + + + +V+ + Sbjct: 137 HPK-----VFDELFVQLVRAGEIGGILDTILQRLGAYIEKNEKLSRRVKGAMVYPAIVLT 191 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + + V T + + + Sbjct: 192 VAVGVVAVLIAFVVPTFEKMFKDFGGAMPAPTQFLIDISHGFRNYWFVY 240 Score = 40.9 bits (94), Expect = 0.085, Method: Composition-based stats. Identities = 12/130 (9%), Positives = 41/130 (31%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+P+ DA+ ++ + + + + +SE + Sbjct: 286 FTRTLGTMLSSGVPILDALEIVAKSAGNRTIEKGILYVR-----AKISEGKNIAGPLAET 340 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G + L ++ D ++ +E ++ G++ F Sbjct: 341 KVFPAMVVQMIGVGEATGAMDAMLNKIADFYDDEVDVAVGALTSMIEPLMMVFLGGTVGF 400 Query: 139 CVSTLVYFTS 148 + + Sbjct: 401 FMIAMYMPIF 410 >gi|28896909|ref|NP_796514.1| general secretion pathway protein F [Vibrio parahaemolyticus RIMD 2210633] gi|153839995|ref|ZP_01992662.1| general secretion pathway protein F [Vibrio parahaemolyticus AQ3810] gi|260365904|ref|ZP_05778398.1| general secretion pathway protein F [Vibrio parahaemolyticus K5030] gi|260877809|ref|ZP_05890164.1| general secretion pathway protein F [Vibrio parahaemolyticus AN-5034] gi|260895542|ref|ZP_05904038.1| general secretion pathway protein F [Vibrio parahaemolyticus Peru-466] gi|260902566|ref|ZP_05910961.1| general secretion pathway protein F [Vibrio parahaemolyticus AQ4037] gi|28805117|dbj|BAC58398.1| general secretion pathway protein F [Vibrio parahaemolyticus RIMD 2210633] gi|149746472|gb|EDM57475.1| general secretion pathway protein F [Vibrio parahaemolyticus AQ3810] gi|308088542|gb|EFO38237.1| general secretion pathway protein F [Vibrio parahaemolyticus Peru-466] gi|308089749|gb|EFO39444.1| general secretion pathway protein F [Vibrio parahaemolyticus AN-5034] gi|308109718|gb|EFO47258.1| general secretion pathway protein F [Vibrio parahaemolyticus AQ4037] gi|308113481|gb|EFO51021.1| general secretion pathway protein F [Vibrio parahaemolyticus K5030] gi|328471684|gb|EGF42561.1| general secretion pathway protein F [Vibrio parahaemolyticus 10329] Length = 405 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 16/173 (9%), Positives = 53/173 (30%), Gaps = 6/173 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + V++G+P+ + + + Q+ P + ++ Sbjct: 64 TAELALITRQLSTLVQSGMPLEECLRAVSEQAEKPRIRTMIAAVRSKVT----EGYPLAD 119 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G+L L L+ + +R+ M++K+ + Sbjct: 120 SLGDYPHVFDELFRSMVAAGEKSGHLDTVLERLAEYVENRQKMRSKLLQAMIYPVVLVVF 179 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMI 183 ++ + V + + + LL + G+++ +++ Sbjct: 180 AVAIVSFLLATVVPKIIEPIIQMGQELPQSTQFLLAASEFVQEWGLIIFAVLV 232 >gi|301064212|ref|ZP_07204655.1| type IV fimbrial assembly protein PilC family protein [delta proteobacterium NaphS2] gi|300441657|gb|EFK05979.1| type IV fimbrial assembly protein PilC family protein [delta proteobacterium NaphS2] Length = 313 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 20/171 (11%), Positives = 58/171 (33%), Gaps = 4/171 (2%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + A + + AG+ + A+ ++ Q S+P RV+ ++ + Sbjct: 70 EVSVATRQLAILLGAGITLVAALEAMLMQVSNPAFK---RVLAQTKESVN-EGNSLAHAL 125 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + S + + G+L L L+ + + ++ +++A + + Sbjct: 126 GRHPRVFSDVYINLVRAGEASGSLELVLHRLADLSEQEQALRGRLKAAMAYPFLMSCVGV 185 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + F + V N + ++ + + L+ + L++ Sbjct: 186 VVVFFLVAFVVPNVTRIFNEMHQALPLPTVILIGISHFLMKFWWLVLLVTI 236 >gi|196250150|ref|ZP_03148844.1| type II secretion system protein [Geobacillus sp. G11MC16] gi|196210334|gb|EDY05099.1| type II secretion system protein [Geobacillus sp. G11MC16] Length = 403 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 54/171 (31%), Gaps = 6/171 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 F L VRAG+ + D+V ++ Q+ + + ++ G LS + +R Sbjct: 63 QHFVIFLRQFATLVRAGVTIVDSVHILAEQTESKSLARALSDIEQSLRGGNPLSTAAARH 122 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R P + + G L E L L+ + K+ + A A I Sbjct: 123 PRLFP-----SLFVNMVRAGEASGTLDETLDRLADHFEKMHRTRQKIVSALAYPIAIAII 177 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 ++ + V + + + ++ +++ Sbjct: 178 ATAVVIFLLVAVVPAFVEMFADFHAELPAITKFVLKTSDVMQHYWWAMVLL 228 >gi|86147848|ref|ZP_01066154.1| Type II secretory pathway, component PulF [Vibrio sp. MED222] gi|85834375|gb|EAQ52527.1| Type II secretory pathway, component PulF [Vibrio sp. MED222] Length = 407 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 17/165 (10%), Positives = 45/165 (27%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + + +AG+P+ ++ + + ++ V+ G L+ Sbjct: 67 EVLVLFCRQLYSLTKAGVPLLRSMKGLTQHCENKQLKVALEEVVAELTNGRGLA-----A 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 M + S + + G L +AL L+ + +++ Sbjct: 122 SMQMHPKVFSSLFVSMISVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITF 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 I F ++ V D + + + + Sbjct: 182 ITIAMFVLNIFVIPQFSSMFARFGVDLPLPTRILMGMSEFFVNYW 226 Score = 39.3 bits (90), Expect = 0.22, Method: Composition-based stats. Identities = 10/132 (7%), Positives = 38/132 (28%), Gaps = 5/132 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 ++AG+P++ ++++ + + Q + ++ + Sbjct: 272 LSRFSRTFALMLKAGVPLNQSLSLSAEALDNRFLE-----LRVQGMKSAIEAGSTVSSTA 326 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + + + G + E L ++ + K +E + G Sbjct: 327 INSEIFTPLVIQMISVGEETGRIDELLLEVADFYDREVDYDLKTLTARIEPILLTIVAGM 386 Query: 136 LPFCVSTLVYFT 147 + + Sbjct: 387 VLVLALGIFLPM 398 >gi|15799790|ref|NP_285802.1| type IV pilin biogenesis protein [Escherichia coli O157:H7 EDL933] gi|15829364|ref|NP_308137.1| type IV pilin biogenesis protein [Escherichia coli O157:H7 str. Sakai] gi|168752499|ref|ZP_02777521.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4113] gi|168755715|ref|ZP_02780722.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4401] gi|168764861|ref|ZP_02789868.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4501] gi|168770427|ref|ZP_02795434.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4486] gi|168776814|ref|ZP_02801821.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4196] gi|168781992|ref|ZP_02806999.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4076] gi|168789634|ref|ZP_02814641.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC869] gi|168801439|ref|ZP_02826446.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC508] gi|195938213|ref|ZP_03083595.1| type IV pilin biogenesis protein [Escherichia coli O157:H7 str. EC4024] gi|208808762|ref|ZP_03251099.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4206] gi|208812868|ref|ZP_03254197.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4045] gi|208820726|ref|ZP_03261046.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4042] gi|209397106|ref|YP_002268712.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4115] gi|217325515|ref|ZP_03441599.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. TW14588] gi|254791241|ref|YP_003076078.1| type IV pilin biogenesis protein [Escherichia coli O157:H7 str. TW14359] gi|261226861|ref|ZP_05941142.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli O157:H7 str. FRIK2000] gi|261255265|ref|ZP_05947798.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli O157:H7 str. FRIK966] gi|291280931|ref|YP_003497749.1| Type IV pilus assembly protein PilC [Escherichia coli O55:H7 str. CB9615] gi|12512815|gb|AAG54410.1|AE005187_3 putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake [Escherichia coli O157:H7 str. EDL933] gi|13359566|dbj|BAB33533.1| putative integral membrane protein HofC [Escherichia coli O157:H7 str. Sakai] gi|187767814|gb|EDU31658.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4196] gi|188013667|gb|EDU51789.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4113] gi|189000460|gb|EDU69446.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4076] gi|189357065|gb|EDU75484.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4401] gi|189360687|gb|EDU79106.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4486] gi|189365208|gb|EDU83624.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4501] gi|189370836|gb|EDU89252.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC869] gi|189376381|gb|EDU94797.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC508] gi|208728563|gb|EDZ78164.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4206] gi|208734145|gb|EDZ82832.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4045] gi|208740849|gb|EDZ88531.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4042] gi|209158506|gb|ACI35939.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4115] gi|209746384|gb|ACI71499.1| putative integral membrane protein HofC [Escherichia coli] gi|209746386|gb|ACI71500.1| putative integral membrane protein HofC [Escherichia coli] gi|209746388|gb|ACI71501.1| putative integral membrane protein HofC [Escherichia coli] gi|209746390|gb|ACI71502.1| putative integral membrane protein HofC [Escherichia coli] gi|209746392|gb|ACI71503.1| putative integral membrane protein HofC [Escherichia coli] gi|217321736|gb|EEC30160.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. TW14588] gi|254590641|gb|ACT70002.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli O157:H7 str. TW14359] gi|290760804|gb|ADD54765.1| Type IV pilus assembly protein PilC [Escherichia coli O55:H7 str. CB9615] gi|320190373|gb|EFW65023.1| Type IV fimbrial assembly protein PilC [Escherichia coli O157:H7 str. EC1212] gi|320642143|gb|EFX11494.1| type IV pilin biogenesis protein [Escherichia coli O157:H7 str. G5101] gi|320647506|gb|EFX16301.1| type IV pilin biogenesis protein [Escherichia coli O157:H- str. 493-89] gi|320652840|gb|EFX21078.1| type IV pilin biogenesis protein [Escherichia coli O157:H- str. H 2687] gi|320658229|gb|EFX25958.1| type IV pilin biogenesis protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663538|gb|EFX30822.1| type IV pilin biogenesis protein [Escherichia coli O55:H7 str. USDA 5905] gi|320668850|gb|EFX35645.1| type IV pilin biogenesis protein [Escherichia coli O157:H7 str. LSU-61] gi|326345176|gb|EGD68919.1| Type IV fimbrial assembly protein PilC [Escherichia coli O157:H7 str. 1125] gi|326346970|gb|EGD70704.1| Type IV fimbrial assembly protein PilC [Escherichia coli O157:H7 str. 1044] Length = 400 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 23/182 (12%), Positives = 55/182 (30%), Gaps = 22/182 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R R ++ + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQRAQRQLTDKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + G +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGIMLTIANKLLM 235 Query: 180 RL 181 R Sbjct: 236 RR 237 >gi|147919599|ref|YP_686661.1| putative type II secretion system protein [uncultured methanogenic archaeon RC-I] gi|110622057|emb|CAJ37335.1| putative bacterial type II secretion system protein [uncultured methanogenic archaeon RC-I] Length = 683 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 58/148 (39%), Gaps = 3/148 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R K + P+ L + + G+ ++ ++ +I + + E +++ + G +S Sbjct: 456 RERKIASEMPDFLKKLASTNETGMTLTQSINLIANSNFGTLSKEVQKIHKDLQWGTDVST 515 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ R + + T+I+ S+ G++ + L + R + M+ + + Sbjct: 516 ALKRFANSLRTSSSTRVITLITKASESSGDIKDVLNIAANDARANELMRKERFDGML--- 572 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 II VY + ++ V+ Sbjct: 573 IYVVIIFISFLVFLYCVYTLTSSFIPVM 600 Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 58/183 (31%), Gaps = 6/183 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQHLG 62 R ++ P+A+ + + G + + + + V E VI Sbjct: 126 ASDRKSRINKGLPSAVTFMYAMSKGGADIITILRSLYEAETTYGEVSREIGFVIRDMDYF 185 Query: 63 L-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 L ++ P + + + GG+++ L N R R + K Sbjct: 186 GNDLRAALINCANQTPSDLLQDLLSNLLSVIDSGGDVTTYLNNKVEQYRMRIALDQKSFL 245 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA-FMLIGIMVMR 180 + A +++ + + ++ + MN P ++ A + +VM Sbjct: 246 EILGLIAESYVTCFVAGPLFIIIMSSVMTIMN--GGSPMILYIIIYAVLPLGSVIFIVMI 303 Query: 181 LMI 183 M+ Sbjct: 304 SMM 306 >gi|153950588|ref|YP_001399590.1| type II secretion system protein [Yersinia pseudotuberculosis IP 31758] gi|152962083|gb|ABS49544.1| type II secretion system protein [Yersinia pseudotuberculosis IP 31758] Length = 277 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 4/157 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 +K+ + KRT L P +DI V++G+ + +++ + + + Sbjct: 117 IKNALTKRTNTLLKSLPFFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTK 176 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + L +I + Y P E+ F + + G + E L +LS+ +R+ + + + Sbjct: 177 RAEINGLENAIKELQYYSPAIEMKMFCSTLQYSLSFGSTVYEQLTHLSQDMREMQLLMTE 236 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + K + + + LV SP + +L Sbjct: 237 ESISKLSTKLTLPLFLFILIPFVLLV--ISPSILELL 271 >gi|152985859|ref|YP_001350498.1| pilin biogenesis protein [Pseudomonas aeruginosa PA7] gi|150961017|gb|ABR83042.1| pilin biogenesis protein [Pseudomonas aeruginosa PA7] Length = 405 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 51/174 (29%), Gaps = 7/174 (4%) Query: 8 RTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65 R K D + + AG+P+ + +I +R + + G SL Sbjct: 59 RGKKIKPMDIALFTRQLSTMMGAGVPLLQSFDIIGEGFDNPNMRKLVEEIKQEVASGNSL 118 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + S+ + + + G L L ++ +++KAK++ Sbjct: 119 ANSLRKKPM-----YFDDLYCNLVDAGEQSGALETLLDRVATYKEKTESLKAKIRKAMTY 173 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A + + + V + + + + L ++ Sbjct: 174 PIAVVIVAVIVSAILLIKVVPQFQSVFEGFGAELPAFTQMVINISEFLQEWWLL 227 Score = 39.7 bits (91), Expect = 0.17, Method: Composition-based stats. Identities = 14/128 (10%), Positives = 39/128 (30%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + + AG+P+ +A+ + G + + V + +S + Sbjct: 277 RTLSTTFAAGVPLVEALDSVAGATGNVVFR-----NAVSRIKQDVSTGMQLNFSMRTTNV 331 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + ++ + G+L E L ++ + + ME A + + + Sbjct: 332 FPSMAIQMAAIGEESGSLDEMLGKVAGFYEEEVDNAVDNLTTLMEPMIMAVLGVLVGGLI 391 Query: 141 STLVYFTS 148 + Sbjct: 392 IAMYLPIF 399 >gi|75906599|ref|YP_320895.1| type II secretion system protein [Anabaena variabilis ATCC 29413] gi|75700324|gb|ABA20000.1| type II secretion system protein [Anabaena variabilis ATCC 29413] Length = 407 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 17/146 (11%), Positives = 52/146 (35%), Gaps = 6/146 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + V AG+ + + V+ Q ++ ++ + G++LS+++ + Sbjct: 72 FSRQLATLVNAGVAIVRGLGVLGDQCTNAKLKQALNDISNDVQSGVNLSDAMRKHPDCFD 131 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++GG L E L L+++L D ++ ++++ + ++ Sbjct: 132 G-----LYVSMIQAGEVGGVLDEVLNRLAKLLEDMARLQNQLKSALAYPVVVGILATAIF 186 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHM 163 ++ + L + Sbjct: 187 VGMTVFLIPIFAKIFVELGTELPALT 212 >gi|187250990|ref|YP_001875472.1| type II secretion system subunit F [Elusimicrobium minutum Pei191] gi|186971150|gb|ACC98135.1| Type II secretion system subunit [Elusimicrobium minutum Pei191] Length = 412 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 13/159 (8%), Positives = 52/159 (32%), Gaps = 9/159 (5%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + + + G+P+ A+ ++ + + +++ + G S ++ + + Sbjct: 72 LAFFAEQLSTLISGGVPLVRAITLLGEHASDPNLGYVLQQIAKDIASGSSFYTALEKHPK 131 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + ++GG L+ L ++ ++ + +++K+ + Sbjct: 132 TFDHIWL-----SLVQAGEVGGQLAGTLMQIAVYIKTQDAVRSKIITAVSYPAILFIMSV 186 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + + F P + + + A + Sbjct: 187 G---VLIYFIVFIVPTFATIFAESNMELPAITQAVLLIS 222 >gi|187926431|ref|YP_001892776.1| type II secretion system protein [Ralstonia pickettii 12J] gi|241665918|ref|YP_002984277.1| type II secretion system protein [Ralstonia pickettii 12D] gi|187728185|gb|ACD29349.1| type II secretion system protein [Ralstonia pickettii 12J] gi|240867945|gb|ACS65605.1| type II secretion system protein [Ralstonia pickettii 12D] Length = 329 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 64/147 (43%), Gaps = 5/147 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLSES 68 D+ P +D++ GL + ++ VI + + EF R + G S ++ Sbjct: 176 MDDELPVMVDMLRLLQGVGLSIDQSLQVIANEFHGMLPVLAGEFGRANQQFASGRSREQT 235 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + R+ R +++ T+++ + GG + E L L++ + + K + + + Sbjct: 236 LLRIARLFDNEDLKGLITLLTQVDRFGGAVQEPLRQFGGRLQENRRARLKERVGKLTVQM 295 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + ++ +L + L+ PG+M V+ Sbjct: 296 TMIMVMTLLPAL--LIITAGPGFMGVM 320 >gi|38232935|ref|NP_938702.1| hypothetical protein DIP0314 [Corynebacterium diphtheriae NCTC 13129] gi|38199193|emb|CAE48818.1| Putative membrane protein [Corynebacterium diphtheriae] Length = 248 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 65/181 (35%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 + + +AL II +R GL DA+A + + + + Sbjct: 65 RRNRADRTTQEALSSALGIIAGDLRCGLGTWDALARVAQEPTTHAPLAAACAAAARRARA 124 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S + + + + V + G +++ + L + DR + + +A Sbjct: 125 GGSAADVLADYSHSIAGLQRVARVWKLSETHGISVAPLVEQLHNEIDDRLRHRDRTKAAL 184 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 A+A+A ++ LP + + L+N+ G LL V A G++ + +I Sbjct: 185 QGAQATAIVLSLLPLFGLGMGIGLGAPVLAFLLNNAIGQTLLIVGTALQCAGLLWSQALI 244 Query: 184 N 184 Sbjct: 245 K 245 >gi|113867007|ref|YP_725496.1| flp pilus assembly protein TadC [Ralstonia eutropha H16] gi|113525783|emb|CAJ92128.1| flp pilus assembly protein TadC [Ralstonia eutropha H16] Length = 293 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 67/147 (45%), Gaps = 1/147 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 ++ + K+ + P LD + SV AGL ++ A+ V + P+R EF V+ Sbjct: 135 LRDVRKRNLLQVTRHLPVFLDFLTLSVEAGLNINGALLQAVEKGPEGPLRREFEHVLRDL 194 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 GLS ++++ RM + ++EV+ F + ++G L+ L S R + +A+ Sbjct: 195 KSGLSRADALRRMDDRLRVKEVTNFVGAVIQAERMGSGLAATLRFQSEQRRTERFQRAEK 254 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146 QA+ K ++ + ++ F Sbjct: 255 QAMEAPVKLIFPLVVFIFPVTFIVLGF 281 >gi|89899355|ref|YP_521826.1| general secretion pathway protein F [Rhodoferax ferrireducens T118] gi|89344092|gb|ABD68295.1| General secretion pathway protein F [Rhodoferax ferrireducens T118] Length = 411 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 65/183 (35%), Gaps = 14/183 (7%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65 +R + V +GLP+ A+ + ++ D + + G + Sbjct: 65 RRRVFSATGLAIWTRQLAGLVSSGLPLERALTSLSDEAERDNEHHLVALLRAEVNGGATF 124 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++S+ R E + + + GNL L L+ L +++ +KAK+ ++ Sbjct: 125 AKALSQHPR-----EFTPIFIAVIGAGEQSGNLGLVLERLADDLEEQQALKAKLIGAALY 179 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI-----GIMVMR 180 + V LV + P +V R LL V G +++ Sbjct: 180 PA---IVSLVAVVIVLFLVTYVVPQVAHVFAGSKRALPLLTVIMIGTSAFVRSYGWLMLV 236 Query: 181 LMI 183 +I Sbjct: 237 AII 239 Score = 35.1 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 34/129 (26%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ A+ S+ R L L + Sbjct: 280 FASTLAMLAAAGVPILKALQAAAETLSNRAM----RTDALDALVLVREGAPLASALAQKK 335 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + + G L L ++ L +A A +E + + Sbjct: 336 R-FPGLLAMFARLGEQTGQLPTMLQRAAKQLSVEVQRRAMQLATILEPLLIVVMGVVVML 394 Query: 139 CVSTLVYFT 147 V ++ Sbjct: 395 IVLAVLMPI 403 >gi|25026855|ref|NP_736909.1| hypothetical protein CE0299 [Corynebacterium efficiens YS-314] gi|23492135|dbj|BAC17109.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 281 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 64/187 (34%), Gaps = 6/187 (3%) Query: 3 HLIKKRTAKFLDD----FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 L + RT++ L + + ++RAG P++DA+ + ++ S + Sbjct: 89 RLKRGRTSRVTRAQTTVLAGFLGLCIGNLRAGAPMADAMDHALAHTTGSTGSAGPTTVAL 148 Query: 59 QHLGLSLSESISRMVRYM--PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 + S + P ++ T+ V + G L L L L ++ + Sbjct: 149 TAAARRVRSGGSGAAVLIDAPTMDLQRLGTIWEVSERHGIPLVRLLDQLKHRLEAQERHR 208 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 A +A+A I+ LP + + L G +LL G Sbjct: 209 QASAAQLQGPQATAVILALLPLAGVLMGTAMGADPIGFLTGGGVGGILLITGVLLSAAGF 268 Query: 177 MVMRLMI 183 ++ ++ Sbjct: 269 ILTEKIL 275 >gi|257453562|ref|ZP_05618852.1| pilin biogenesis protein [Enhydrobacter aerosaccus SK60] gi|257449020|gb|EEV23973.1| pilin biogenesis protein [Enhydrobacter aerosaccus SK60] Length = 407 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 20/178 (11%), Positives = 54/178 (30%), Gaps = 8/178 (4%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHL 61 +KK D + + ++AG+P++ + ++ +P E V Sbjct: 58 FQMKKSIKAI--DIAIFVRQLATMMKAGVPLTQSFEIVADALDNPSMKELVLSVKSEVES 115 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + ++ + R + + G L L ++ + +KAK++ Sbjct: 116 GSTFAAALRKHPR-----YFDDLFCSLVEAGEQSGALETMLERVATYKEKSELLKAKIKK 170 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A + + + V + + + V + + + Sbjct: 171 ALKYPIAVIVVAIIVTIILLVKVVPVFADLFHSFGAELPAFTQMVVNMSEWMQKWWWL 228 >gi|17549304|ref|NP_522644.1| putative tight adherence TadC related transmembrane protein [Ralstonia solanacearum GMI1000] gi|17431556|emb|CAD18234.1| probable pilus assembly tadc transmembrane protein [Ralstonia solanacearum GMI1000] Length = 326 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 64/146 (43%), Gaps = 5/146 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLSES 68 D+ P +D++ GL + ++ VI + + EF R + G S ++ Sbjct: 170 LDDELPVMVDMLRLLQGVGLSIDQSLQVIANEFHGMLPVLADEFGRANQQFASGRSREQT 229 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + R+ R +++ T+++ + GG + E L L++ + + K + + K Sbjct: 230 LLRIARLFDNEDLKGLITLLTQVDRFGGAVQEPLRQFGLRLQENRRSRLKERVGKLTVKM 289 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNV 154 + ++ +L + L+ PG+M+V Sbjct: 290 TVVMVLTLLPAL--LIITAGPGFMSV 313 >gi|310823682|ref|YP_003956040.1| type IV pilin [Stigmatella aurantiaca DW4/3-1] gi|309396754|gb|ADO74213.1| Type IV pilin [Stigmatella aurantiaca DW4/3-1] Length = 413 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 19/166 (11%), Positives = 49/166 (29%), Gaps = 8/166 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AGLP+ + ++ Q +P + + G + ++++ + Sbjct: 79 FTRQFATMIDAGLPLVQCLDILGSQMENPAFKKVVFAIKGKVEQGSTFADALKDHPK--- 135 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++GG L L L+ + +K KV++ + + Sbjct: 136 --VFDELFVQLCAAGEVGGILDTILNRLAAYREKAEKLKGKVKSAMTYPSVVICVAIGVT 193 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + V ++ V + L + M+ Sbjct: 194 ALLLLKVTPVFEKMFKDFGSELPAPTQFVVDMSNWLQA--WIFHMV 237 Score = 37.4 bits (85), Expect = 0.81, Method: Composition-based stats. Identities = 12/130 (9%), Positives = 37/130 (28%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+P+ DA+ V + + E + ++E + + Sbjct: 282 FTRTLGTMISSGVPILDALDVTAKTAGNRTIEEAIYYVR-----GKIAEGKNIAGPLLET 336 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G + L ++ D + +E ++ G + Sbjct: 337 GVFPSMVVQMIGVGEATGAMDAMLNKIADFYDDEVDAAVAGLTAMIEPLLMVFLGGVVGG 396 Query: 139 CVSTLVYFTS 148 + + Sbjct: 397 FLIAMYLPIF 406 >gi|256823528|ref|YP_003147491.1| general secretion pathway protein F [Kangiella koreensis DSM 16069] gi|256797067|gb|ACV27723.1| general secretion pathway protein F [Kangiella koreensis DSM 16069] Length = 407 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 22/173 (12%), Positives = 57/173 (32%), Gaps = 6/173 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D + V+A LP+ +A+ + Q+ V+S V G +L++ ++ Sbjct: 67 ADLALVTRQLATLVKAALPIEEALKAVADQTDKGKVKSIILGVRAKVLEGHTLADGMTEF 126 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G+L + L L+ R+ + +KV A + + Sbjct: 127 PN-----VFNELYRSMVAAGERAGHLDKVLNRLADYTERRQKINSKVSAAMVYPAVLILV 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + + + + + + +I + L++ Sbjct: 182 AVGVVSGLMVFAVPKVVEQFTHMSQELPVLTKILIGISDFVINYGLYTLILLI 234 >gi|55377349|ref|YP_135199.1| hypothetical protein rrnAC0464 [Haloarcula marismortui ATCC 43049] gi|55230074|gb|AAV45493.1| unknown [Haloarcula marismortui ATCC 43049] Length = 815 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 60/161 (37%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + +R ++ D P+ L+ + AG+ V +++ + G + E R+ Sbjct: 467 VRFIYTQRLSRIEDATPDLLERLASLNEAGMTVVESLRRVRGSDIGVLTEEMHRIWADIR 526 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G ++ +++ R R + V+ T+++ G L + R +K + + Sbjct: 527 MGANVDDALVRFGRRVQTTAVTRIVTLLTHAMHASGQLGPVFRIAATQSRADLRLKRRRR 586 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + ++ + + V + + P G Sbjct: 587 QQMLTYLVVIYVAFLVFLVIIVAVQEVLVPSLPSSVPTPAG 627 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 24/181 (13%), Positives = 57/181 (31%), Gaps = 4/181 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIET 58 +K+ R+ + + + R G+ SD + V+ + E + Sbjct: 157 LKNQADVRSRNIDEGMARTIAFMYALSRGGMSFSDVMRVLARNQEIYGDTAREVGVAVRE 216 Query: 59 QHLGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L + ++ + R P ++ F +S Q G +L+ L ++ + Sbjct: 217 MDLFGRDMITALEHVSRRTPSEQFKTFIENLSSVLQSGQSLAPFLREQYERHQEEAAERQ 276 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + A A++ + + + G M+ + +G M Sbjct: 277 EDLLERLATVAEAYVTVFVAAVLFLMTILLVFGLTTTDTLWLL-QMMAYLVIPLANVGFM 335 Query: 178 V 178 V Sbjct: 336 V 336 >gi|220933414|ref|YP_002512313.1| general secretion pathway protein F [Thioalkalivibrio sp. HL-EbGR7] gi|219994724|gb|ACL71326.1| general secretion pathway protein F [Thioalkalivibrio sp. HL-EbGR7] Length = 404 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 22/171 (12%), Positives = 49/171 (28%), Gaps = 6/171 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D + VR+GLP+ +A+ + QS P + + Sbjct: 66 DLALLTRQLATLVRSGLPIEEALGTVARQSEKPRIRSMLMAVR----TRVMEGHTLARGL 121 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + G+L L L+ +R+ M+ K+Q + Sbjct: 122 SDFPHVFPDIYRTTVEAGEQSGHLEVVLERLADYTENRQQMRQKIQLALFYPAILTAMAL 181 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183 + + V + + L+ V+ G+ ++ ++ Sbjct: 182 LVTIALLAYVVPEVVQVFEGIGQELPWLTRTLIAVSDGLRDYGLWMLLGLV 232 Score = 37.8 bits (86), Expect = 0.71, Method: Composition-based stats. Identities = 15/131 (11%), Positives = 41/131 (31%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + +G+ V +A+ + +S P+R + V + G + ++ R + P Sbjct: 273 FARTLSILSASGVSVLEALRISAQVVASLPMRDAIQTVAQRVREGSGIGNALERTGYFPP 332 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G+L L + + + +E + + Sbjct: 333 ------ITVHLIKSGEASGSLDAMLERAAVNQERELEARIGMIMGILEPVLILVMGLVVL 386 Query: 138 FCVSTLVYFTS 148 V ++ Sbjct: 387 VIVLAILLPIF 397 >gi|163856391|ref|YP_001630689.1| hypothetical protein Bpet2080 [Bordetella petrii DSM 12804] gi|163260119|emb|CAP42420.1| putative membrane protein [Bordetella petrii] Length = 290 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 50/135 (37%), Gaps = 1/135 (0%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISR 71 + P LD++ + +GL + A+ P+R E + G+ + ++ Sbjct: 145 GRELPFVLDMMTLCIESGLGLHGALQQAAQHGPPGPLRQELHHALADMRAGMPRAAALKA 204 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + V + ++ LG +L L + R + +A+ A+ K Sbjct: 205 LADRADSPAVRSWIAALTQADSLGMSLGAVLRGHAAQCRTDRFQRAEKLAMEAPVKMLLP 264 Query: 132 IIGSLPFCVSTLVYF 146 +IG + C ++ F Sbjct: 265 LIGCIFPCTFIVLAF 279 >gi|261349609|ref|ZP_05975026.1| putative bacterial type II secretion system protein F domain protein [Methanobrevibacter smithii DSM 2374] gi|288861567|gb|EFC93865.1| putative bacterial type II secretion system protein F domain protein [Methanobrevibacter smithii DSM 2374] Length = 305 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 69/170 (40%), Gaps = 2/170 (1%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + P AL + ++AG + D + + + + EF+RV++ G S +++ M Sbjct: 132 ELPYALRHMATELKAGKGLHDTLLTVSIANYGSLSGEFKRVLKEIKYGKSSEDALMEMSL 191 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK--ASAWI 132 + + +S I ++GGNL+ +L ++ + +K K + + +I Sbjct: 192 RVSSEGLSRAVHQIVGTLRVGGNLANSLNVIAEDISFDMQIKLKEYSQKLNGFILIYTFI 251 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 P + ++ S +++ + M + ++ + ++ M Sbjct: 252 AILAPVIILIMLMAASTVVGDIVSEEMVFIMYMFFFPLIVVFMALFIKRM 301 >gi|27364825|ref|NP_760353.1| MSHA biogenesis protein MshG [Vibrio vulnificus CMCP6] gi|37681127|ref|NP_935736.1| MSHA biogenesis protein MshG [Vibrio vulnificus YJ016] gi|320155215|ref|YP_004187594.1| MSHA biogenesis protein MshG [Vibrio vulnificus MO6-24/O] gi|27360970|gb|AAO09880.1| MSHA biogenesis protein MshG [Vibrio vulnificus CMCP6] gi|37199878|dbj|BAC95707.1| MSHA biogenesis protein MshG [Vibrio vulnificus YJ016] gi|319930527|gb|ADV85391.1| MSHA biogenesis protein MshG [Vibrio vulnificus MO6-24/O] Length = 406 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 19/165 (11%), Positives = 50/165 (30%), Gaps = 6/165 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74 + +AG+P+ ++ +V + +++ V+ G SLS Sbjct: 68 LVLFCRQLYSLTKAGVPLLRSMRGLVQNCENKQLKAALEEVVAELTNGRSLS-----ASM 122 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + S + + G L +AL L+ + +++ I Sbjct: 123 QLHSKVFSPLFVSMIHVGENTGRLDQALLQLANYYEQELETRKRIKTAMRYPTFVISFIV 182 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 F ++ V + D + + + + ++ Sbjct: 183 VAMFILNVKVIPQFASMFSRFGVDLPLPTRILIGMSEFFVNYWML 227 Score = 41.6 bits (96), Expect = 0.053, Method: Composition-based stats. Identities = 11/135 (8%), Positives = 34/135 (25%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 ++AG+P++ ++A+ + + + Sbjct: 268 RAQLSRFSRTFALMLKAGVPLNQSLALSAEAMGNRYLELKIL-----KMKADIEAGSQVS 322 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 V + + + + G + E L ++ + K +E + Sbjct: 323 VTAINSGIFTPLVIQMISVGEETGRIDELLMEVADFYDREVDYDLKTLTARIEPILLVIV 382 Query: 133 IGSLPFCVSTLVYFT 147 G + + Sbjct: 383 AGMVLVLALGIFLPM 397 >gi|239929828|ref|ZP_04686781.1| hypothetical protein SghaA1_16497 [Streptomyces ghanaensis ATCC 14672] Length = 290 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 2/162 (1%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + VRAG A+ V S + V+ G + E+++ + + + Sbjct: 124 LAGEVRAGRQPGAALLTAVRD-SGGLGDAQAAVLAAARFGGDVPEALAAAAQP-GAEGLR 181 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + V G L++ L L LR ++ +A ++A A+A+A ++ LP Sbjct: 182 GLAACWRVAVDQGAGLADGLDRLEAALRAERDRRADLRAQLAGARATAVMLAGLPAVGLA 241 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + +L++ P G L V +G+ ++ Sbjct: 242 LGAALGADPLRILLHTPSGLGCLAVGGVLEGLGLWWALRIMR 283 >gi|54310290|ref|YP_131310.1| putative Type IV pilin biogenesis protein [Photobacterium profundum SS9] gi|46914731|emb|CAG21508.1| putative Type IV pilin biogenesis protein [Photobacterium profundum SS9] Length = 406 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 23/194 (11%), Positives = 56/194 (28%), Gaps = 15/194 (7%) Query: 3 HLIKKRT----AKFLDDFP-----NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR 53 IK+R +K + + + +G+PV ++ +I + Sbjct: 46 KKIKRRKPSTFSKLRNQMKPEDITETTRQLATMIESGVPVVQSLKLIA----NSHHKAEV 101 Query: 54 RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 R +Q + + F + + G+L E + ++ + Sbjct: 102 RATLSQVTMQVEAGASLSKALKTSSPLFDDFYCDLVATGEQTGHLGEVFSRIATYREKGE 161 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 M+ KV + + + V + + L + A+ L Sbjct: 162 IMRKKVIKAMIYPTMVTLTAVIVTVMMLIFVIPQFASIFSSFGAELPLFTQLVINASDFL 221 Query: 174 I--GIMVMRLMINF 185 I G+ +++ Sbjct: 222 IAHGLYFTIGLVSI 235 >gi|148545924|ref|YP_001266026.1| type II secretion system protein [Pseudomonas putida F1] gi|148509982|gb|ABQ76842.1| type II secretion system protein [Pseudomonas putida F1] Length = 402 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 24/172 (13%), Positives = 53/172 (30%), Gaps = 12/172 (6%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLS 64 K+R D + ++AG+P+ A V+ + R+ + GL Sbjct: 58 KRRQKA---DPAGFSRQLATLLKAGVPLLQAFEVMGRSGCDAAQAALLERLKQDVASGLG 114 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L++++ R + + G L L L+ +L R+ + KV+ + Sbjct: 115 LADALQRHPA-----WFDALYCNLVRVGEQSGTLDRQLEQLAGMLEQRRVLHKKVRKAMI 169 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + L+ P + ++ + G+ Sbjct: 170 YPLLLLLTGLG---VSAILLLEVIPKFESMFSGMGAALPAFTQWVINLSTGL 218 Score = 38.2 bits (87), Expect = 0.54, Method: Composition-based stats. Identities = 15/137 (10%), Positives = 42/137 (30%), Gaps = 7/137 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISR 71 + S AG+P+ DA+ + + + R+ + G L+++++ Sbjct: 266 QAALARFARSLATSYGAGVPLLDALGTVARVTGGDLHEQAVLRLRQGMANGQGLNQAMAG 325 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P ++ + G L + L + ++ + +E Sbjct: 326 EPLFPP------LLVQLTAIGESSGTLDQMLEKAASHYEEQVSQALDQLTSLLEPAIVLI 379 Query: 132 IIGSLPFCVSTLVYFTS 148 + + V + Sbjct: 380 LGLLVGGLVVAMYLPIF 396 >gi|257485210|ref|ZP_05639251.1| general secretion pathway protein GspF [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331010891|gb|EGH90947.1| general secretion pathway protein GspF [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 403 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 20/181 (11%), Positives = 56/181 (30%), Gaps = 15/181 (8%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + + + AGLP+ +A+ V Q+ + + + + Sbjct: 63 DADLASVTRQLASLLSAGLPLDEALGATVEQAE-RQHIIQTLSAIRTDVRSGMRLAEALA 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R + + + G+L+ + L+ + +R ++ K+ + + Sbjct: 122 ARPRDFPD---IYRALIGAGEESGDLARVMERLADYIEERNGLRGKILTAFIYPGVVGLV 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-----------IGIMVMRL 181 ++ + + V + D G L +AA+ + + + Sbjct: 179 SIAIVIFLLSYVVPQIVSAFSQARQDLPGLTLAMLAASDFIRAWGLVCLGVLLAALWGWR 238 Query: 182 M 182 + Sbjct: 239 I 239 Score = 34.3 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 37/129 (28%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ A+ S+ R + + E ++ V Sbjct: 272 FASTLAILGAAGVPLLRALDAARQTLSND-----RLSLAVSEATSRVREGVNLAVALRME 326 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G+L L ++ L +A +E + G + Sbjct: 327 KVFPPLLIHLIASGEKTGSLPPMLDRAAQTLSRDIERRALGMTALLEPLMIVIMGGVVLV 386 Query: 139 CVSTLVYFT 147 V ++ Sbjct: 387 IVMAVMLPI 395 >gi|76802644|ref|YP_330739.1| transmembrane protein (type II secretion system proteins TadC) [Natronomonas pharaonis DSM 2160] gi|76558509|emb|CAI50101.1| transmembrane protein (homolog 2 to type II secretion system proteins TadC) [Natronomonas pharaonis DSM 2160] Length = 671 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 20/151 (13%), Positives = 58/151 (38%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + K D + L + + G+ + +++ V+ SS + EFR + + G SL Sbjct: 448 RSRRKITDSLSDDLRKLSSANDTGMTLLESIRVVADTSSGRLAEEFRVMYAKVNYGTSLK 507 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + ++ +IS + +++ L+ ++ ++ +++ ++ + Sbjct: 508 TALREFNNKYHIPRLARTLKLISKAQEASSQITQVLSTAAQASENQDDIERNRKSRTRMQ 567 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + V L+ M L++ Sbjct: 568 MVIIIMTYVTLLGVMALLKVEFLDTMAGLVD 598 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 57/181 (31%), Gaps = 7/181 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHLG 62 R + +++ + GL + + + + V EF+ ++ Sbjct: 139 ADARKREINVLLSDSVSFMYALSVGGLNQLEILEAMARADDTYGEVSQEFQSIVLETEYF 198 Query: 63 -LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 +I P +E+S F T + GG++ + L + + + Sbjct: 199 DTDYRTAIRNQAMQTPSEELSQFLTDMLSIINSGGDMEQFLEDQKEKHMRTSKQEQETVL 258 Query: 122 LSMEAKASAWI----IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++E ++ L + ++ +L G + L A +L+ + Sbjct: 259 ETLELFGEMYMTLSLFPLLLIIIVVIMSMLGEAQDALLYGTVYGLIPLIGAGFLVLVSTV 318 Query: 178 V 178 V Sbjct: 319 V 319 >gi|160901134|ref|YP_001566716.1| general secretion pathway protein F [Delftia acidovorans SPH-1] gi|160366718|gb|ABX38331.1| general secretion pathway protein F [Delftia acidovorans SPH-1] Length = 408 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 56/159 (35%), Gaps = 9/159 (5%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + V +GLP+ A+A + ++ + + G + + ++++ R Sbjct: 71 LTVWTRQMAGLVGSGLPIERALAALSEEADDPRQHHLVAALRAEVNAGSTFARALAQHPR 130 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 E S + + G+L L L+ L R+ +++K+ ++ + Sbjct: 131 -----EFSDIYCAVIGAGEASGSLGPVLERLADDLESRQALQSKLIGAALYPA---IVTL 182 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 V LV + P +V R L VA + Sbjct: 183 VAIVIVLFLVSYVVPQVASVFAGTKRALPWLTVAMLALS 221 >gi|90581087|ref|ZP_01236887.1| putative general secretion pathway protein F [Vibrio angustum S14] gi|90437783|gb|EAS62974.1| putative general secretion pathway protein F [Vibrio angustum S14] Length = 408 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 58/167 (34%), Gaps = 11/167 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 ++ + V+A +P+ + + + Q+ +++ V G +L++S++ Sbjct: 67 TNELALITRQLATLVQASMPLEECIKAVAEQNEKPRLKNILLAVRSRVVEGYTLADSMAE 126 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + G+L L L+ +R+ M++K+Q + Sbjct: 127 YP-----HIFDQLFRAMVAAGEKSGHLDTILNRLADYTENRQQMRSKLQQAMIYPI---M 178 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + V+ L+ P ++ + G L + + V Sbjct: 179 LTLVAVSVVAFLLATVVPKIVDQFVQ--MGQQLPTITEVLLAASNFV 223 >gi|320328776|gb|EFW84775.1| general secretion pathway protein GspF [Pseudomonas syringae pv. glycinea str. race 4] gi|330881976|gb|EGH16125.1| general secretion pathway protein GspF [Pseudomonas syringae pv. glycinea str. race 4] Length = 403 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 23/182 (12%), Positives = 62/182 (34%), Gaps = 17/182 (9%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 D + + + AGLP+ +A+ V Q+ + + G+ L+E+++ Sbjct: 63 DADLASVTRQLASLLSAGLPLDEALGATVEQAERQHIIQTLGAIRTDVRSGMRLAEALAA 122 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 R + + + G+L+ + L+ + +R ++ K+ + Sbjct: 123 RPR-----DFPDIYRALIGAGEESGDLARVMERLADYIEERNGLRGKILTAFIYPGVVGL 177 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-----------IGIMVMR 180 + ++ + + V + D G L +AA+ + + + Sbjct: 178 VSIAIVIFLLSYVVPQIVSAFSQARQDLPGLTLAMLAASDFIRAWGLVCLGVLLAALWGW 237 Query: 181 LM 182 + Sbjct: 238 RI 239 Score = 34.3 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 37/129 (28%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ A+ S+ R + + E ++ V Sbjct: 272 FASTLAILGAAGVPLLRALDAARQTLSND-----RLSLAVSEATSKVREGVNLAVALRME 326 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G+L L ++ L +A +E + G + Sbjct: 327 KVFPPLLIHLIASGEKTGSLPPMLDRAAQTLSRDIERRALGMTALLEPLMIVIMGGVVLV 386 Query: 139 CVSTLVYFT 147 V ++ Sbjct: 387 IVMAVMLPI 395 >gi|83589204|ref|YP_429213.1| hypothetical protein Moth_0336 [Moorella thermoacetica ATCC 39073] gi|83572118|gb|ABC18670.1| hypothetical protein Moth_0336 [Moorella thermoacetica ATCC 39073] Length = 316 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 69/183 (37%), Gaps = 1/183 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++ R K ++ A+ I V A+++ + P+ R+ G Sbjct: 134 RVQNRRNKIIEQLAAAVRIFAAEFGDTPQVPRALSITAQKVPAPLGDILRQADTDLAAGK 193 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S+ + +++ + + F ++ + + L+ + + + + K + Sbjct: 194 SIDDVCLYLMKELDFEYGRMFVQLLRLAWD-DAAVRPLFTRLAGRIANLQGLIYKNASGM 252 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 ++ + +L L+ P L+ +P G +L+ V +L+G+++ R++ Sbjct: 253 AYSRFMGMFVNALILPEFLLMRSVVPETGYFLVYNPLGRLLVVVCFLSILVGMILDRVLS 312 Query: 184 NFD 186 + Sbjct: 313 GVE 315 >gi|93005087|ref|YP_579524.1| general secretion pathway protein F [Psychrobacter cryohalolentis K5] gi|92392765|gb|ABE74040.1| General secretion pathway protein F [Psychrobacter cryohalolentis K5] Length = 400 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 23/173 (13%), Positives = 58/173 (33%), Gaps = 13/173 (7%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESISRMV 73 + + + AG+P+ + +A + QS + + L SL+ ++ + Sbjct: 63 ELALLTRQLSVLLAAGIPLEETLAAVAKQSPKTHIKSLILAVRSHVLEGLSLARALQQAA 122 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + P + G+L L L+ +R ++ K+Q + ++ Sbjct: 123 SFPP------LYIATIAAGEKSGHLDLILNQLADYTENRFALQKKIQGAMVYPI---VLM 173 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF---MLIGIMVMRLMI 183 + L+ F P + V + L+ ++ + L++ Sbjct: 174 VMAVGVIMGLMSFVVPKIVKVFEQSEQALPLITQIVLSLSNIITQWWWLMLLV 226 >gi|317491688|ref|ZP_07950123.1| type II secretion system protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920122|gb|EFV41446.1| type II secretion system protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 279 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 4/157 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 + I R LD P +D+I V+AG+ V +V I +S+D ++ ++ Sbjct: 120 LNPAINTRIKLMLDALPYFVDLIAVCVQAGMTVESSVKFIAERSADLDKNLADLMLHLVK 179 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + L E + + R M + E+ F + G +L E L LS+ +RD + + ++ Sbjct: 180 RAEVSGLEEGLMDLYRSMDMTEMRMFCATLQQSVHYGTSLYENLMELSKDIRDMQLLNSE 239 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + AK S +I + F ++ L+ PG + ++ Sbjct: 240 EKIGKLSAKMSVPLILFIMFPITILIAA--PGILRIM 274 >gi|212638472|ref|YP_002314992.1| type II secretory pathway component PulF [Anoxybacillus flavithermus WK1] gi|212559952|gb|ACJ33007.1| Type II secretory pathway component PulF [Anoxybacillus flavithermus WK1] Length = 403 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 49/166 (29%), Gaps = 6/166 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 F L ++AG+ + DA ++ Q+ ++ + E G LS +++ Sbjct: 63 QHFVIYLRQFATLLKAGVTIVDATRILAEQTESKALKKALVHIEEQLRSGQPLSTAMTDH 122 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P + + GN+ E L L+ + K+ + I Sbjct: 123 PNIFPP-----LVINMIRAGEASGNMDETLERLADHFEKVHRTRQKIVSALAYPVVVGII 177 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + V T D + A+ ++ Sbjct: 178 AVIVVIFLLVQVVPTFVSMFADFGADLPAITKFVLRASEVMQTYWW 223 >gi|145300645|ref|YP_001143486.1| general secretion pathway protein F [Aeromonas salmonicida subsp. salmonicida A449] gi|142853417|gb|ABO91738.1| general secretion pathway protein F [Aeromonas salmonicida subsp. salmonicida A449] Length = 388 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 48/162 (29%), Gaps = 6/162 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66 R + + V AGL + +A+ + Q +RS V G SL+ Sbjct: 42 RRGASTSELALITRQLATLVGAGLTIEEALRAVAEQCEKAHLRSLVATVRSKVVEGYSLA 101 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ + + G+L + L L+ R++M+ K+ + Sbjct: 102 DSLGAFP-----HVFDQLFRSMVAAGEKSGHLEKVLNRLADYTEQRQHMRTKLLQAMIYP 156 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168 + + + T V + + Sbjct: 157 IVLTLVAVGVISILLTAVVPKVVAQFEHMGQQLPATTRFLIG 198 >gi|240173378|ref|ZP_04752036.1| putative transmembrane protein [Mycobacterium kansasii ATCC 12478] Length = 265 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 62/172 (36%), Gaps = 1/172 (0%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 A D++V +R G+ A ++ V + R V LG ++ + + Sbjct: 90 KSLEAAFDVLVGELRVGIHPVQAFGTAADETDGAVAASMRAVAARARLGADVTGGLRAVA 149 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR-ILRDRKNMKAKVQALSMEAKASAWI 132 R L + G L ++ + +R+ A V + A+A+A I Sbjct: 150 RMSALPTHWERLAGYWQLASDHGLAIATLMRAAQSDIVERQRFSASVASGLAGARATANI 209 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + LP L ++ L+N G LL + A + G++ + + Sbjct: 210 LSGLPLLGVLLGQLIGARPVSFLLNGHAGGWLLVIGVALVCAGLLWSDRITD 261 >gi|308051179|ref|YP_003914745.1| Type II secretion system F domain protein [Ferrimonas balearica DSM 9799] gi|307633369|gb|ADN77671.1| Type II secretion system F domain protein [Ferrimonas balearica DSM 9799] Length = 405 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 23/165 (13%), Positives = 57/165 (34%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + ++ R+G+P+ A+A +V Q + + + ++E G LS ++++ Sbjct: 64 AELLMFTRQMLSLTRSGIPLLQALAGLVESQRHPLMAAALKDIVEQLTAGRPLSAALNQH 123 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R + + + G L +A LS L ++ + ++Q+ Sbjct: 124 PR-----VFNALYVAMVHVGENTGRLDQAFERLSDHLEQEQDTRRRIQSAMRYPLLVLGF 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 I ++ LV + + +A + + Sbjct: 179 IAIAVAVLNILVIPKFAQMFAKFGAELPLPTRILIATSDFFVTWW 223 Score = 38.6 bits (88), Expect = 0.46, Method: Composition-based stats. Identities = 10/139 (7%), Positives = 36/139 (25%), Gaps = 5/139 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + +R G+PV+ +++++ + + + + Sbjct: 266 RASLGRFARSLSMMLRGGVPVNQSLSLVADAVDNRFMHDRIIGMRRGIEAGDTISRTAVG 325 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G + E L +++ + + K +E + Sbjct: 326 AELFTP-----LVLQMMAVGEETGRIDELLDDVAAFYEREVDYELKGLTAKIEPVLLVLV 380 Query: 133 IGSLPFCVSTLVYFTSPGY 151 G + + + Sbjct: 381 AGMVLVLALGVYLPMWDMF 399 >gi|285019423|ref|YP_003377134.1| general secretion pathway protein f [Xanthomonas albilineans GPE PC73] gi|283474641|emb|CBA17140.1| probable general secretion pathway protein f [Xanthomonas albilineans] Length = 404 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 20/171 (11%), Positives = 54/171 (31%), Gaps = 6/171 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + AG P+ A+++++ + + + + G LS ++ R Sbjct: 65 AALVQFTQQLATLLGAGQPLDRALSILLELPEDERSKRTIGDIRDAVRGGAPLSTALER- 123 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 S + + GG+L + L L+ L + ++ +V + + Sbjct: 124 ----QHGLFSRLYINMVRAGEAGGSLHDTLQRLAEYLERSRELRGRVINALIYPAILVSV 179 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +G + V L ++ + ++ L++ Sbjct: 180 VGCALLFLLGYVVPQFAQMYESLDVALPWFTQAVLSVGLFVRDWWIVLLVV 230 >gi|26987369|ref|NP_742794.1| type IV pili biogenesis protein PilC [Pseudomonas putida KT2440] gi|24982023|gb|AAN66258.1|AE016254_5 type IV pili biogenesis protein PilC [Pseudomonas putida KT2440] Length = 402 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 53/171 (30%), Gaps = 11/171 (6%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSL 65 KR K D + ++AG+P+ A V+ + R+ + GL L Sbjct: 58 KRREK--ADPAGFSRQLATLLKAGVPLLQAFEVMGRSGCDAAQAALLERLKQDVASGLGL 115 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++ R + + G L L L+ +L R+ + KV+ + Sbjct: 116 ADALQRHPA-----WFDALYCNLVRVGEQSGTLDRQLEQLAGMLEQRRVLHKKVRKAMIY 170 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + L+ P + ++ + G+ Sbjct: 171 PLLLLLTGLG---VSAILLLEVIPKFESMFSGMGAALPAFTQWVINLSTGL 218 Score = 38.6 bits (88), Expect = 0.47, Method: Composition-based stats. Identities = 15/137 (10%), Positives = 42/137 (30%), Gaps = 7/137 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISR 71 + S AG+P+ DA+ + + + R+ + G L+++++ Sbjct: 266 QAALARFARSLATSYGAGVPLLDALGTVARVTGGDLHEQAVLRLRQGMANGQGLNQAMAG 325 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P ++ + G L + L + ++ + +E Sbjct: 326 EPLFPP------LLVQLTAIGESSGTLDQMLEKAASHYEEQVSQALDQLTSLLEPAIVLI 379 Query: 132 IIGSLPFCVSTLVYFTS 148 + + V + Sbjct: 380 LGLLVGGLVVAMYLPIF 396 >gi|323493929|ref|ZP_08099046.1| putative Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546] gi|323311870|gb|EGA65017.1| putative Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546] Length = 288 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 62/158 (39%), Gaps = 4/158 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIET 58 + K T P LD++ V G+ + ++ + + + D + RV Sbjct: 133 VASRGKANTKHISSRLPFLLDLMNVCVHTGMTIESSLDYLSKELVTVDRNLAYVVRVTVD 192 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + L +++ +P E F + Q G ++ LA L+ +R+ M + Sbjct: 193 RSRLVGLEKALEEFYDLVPTSESQSFVMTMVQSLQFGSSIGPVLATLATDIRELNMMDLE 252 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 + M AK S +I + + L+ PG + +L+ Sbjct: 253 ERIGKMGAKMSIPLIAFIMVPIVVLIAA--PGILRMLM 288 >gi|167719676|ref|ZP_02402912.1| bacterial type II secretion system protein F domain [Burkholderia pseudomallei DM98] Length = 249 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + ++ +R P+ALD++V AG ++ A+ + + P+ EF + Sbjct: 89 LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 148 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + +++ M + L + T + Q G ++++L LSR R + + Sbjct: 149 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 208 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K + ++ + V+ + Sbjct: 209 EEKAAKLAPKMTLPMMLFVMPTVALI 234 >gi|163751667|ref|ZP_02158887.1| type IV pilus biogenesis protein PilC [Shewanella benthica KT99] gi|161328493|gb|EDP99648.1| type IV pilus biogenesis protein PilC [Shewanella benthica KT99] Length = 423 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/175 (9%), Positives = 51/175 (29%), Gaps = 12/175 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMV 73 D I + AG+P+ + ++ E ++ G+ LS+++ Sbjct: 85 DIAMITRQIATMLSAGVPLVTTIEMLGRSHEKAKMRELLGTIVNDVQAGIPLSDALR--- 141 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 Q + + G+L ++ + +K+K++ A + Sbjct: 142 --PHRQYFDDLYVDLVAAGEHSGSLDAVFDRVATYREKAEALKSKIKKAMFYPAAVVVVA 199 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA------AFMLIGIMVMRLM 182 + + V + + ++ + +++M + Sbjct: 200 IGVTTLLLLFVVPQFQEIFAGFGAELPSFTQFVIGISEALQASWYIFAVIIMVSI 254 >gi|149190627|ref|ZP_01868895.1| general secretion pathway protein F [Vibrio shilonii AK1] gi|148835510|gb|EDL52479.1| general secretion pathway protein F [Vibrio shilonii AK1] Length = 409 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 54/150 (36%), Gaps = 9/150 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + V++G+P+ + + + QS +RS + G +LS+S++ Sbjct: 70 DLALITRQLSTLVQSGMPLEECLKAVSEQSEKPRIRSMLAAIRSKVTEGYTLSDSLAEYP 129 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G+L L L+ +R+ +++K+Q + ++ Sbjct: 130 -----HIFDELFRSMVAAGEKSGHLDSILERLADYAENRQKLRSKLQQAMIYPV---VLV 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 V+ L+ P + + + Sbjct: 182 VFAVAIVAFLLAAVVPKIVGQFVQMGQELP 211 >gi|319937913|ref|ZP_08012313.1| hypothetical protein HMPREF9488_03149 [Coprobacillus sp. 29_1] gi|319806819|gb|EFW03458.1| hypothetical protein HMPREF9488_03149 [Coprobacillus sp. 29_1] Length = 323 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 69/188 (36%), Gaps = 2/188 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIET 58 + + + K ++F L I + GL A+ G +S + E V + Sbjct: 133 LMNKMDKTRKALKEEFMEKLRDIGAHLSVGLNFITAINESLNSGNTSIVMARELSSVKDD 192 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + G S SE+ +M + + E+ F+ V + + GGN + + + ++ + + Sbjct: 193 IYSGKSYSETFMKMYERLQISEIKAFAQVCEIYEETGGNFLDIIYAFEDSYKMKRKVLQE 252 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + + +P P + + G +L + + + GI++ Sbjct: 253 NEVYEAAMRTEQKFVIGIPSICIVAFGVFMPEIIRGFYSSFFGQVLGIILFSIIYGGILL 312 Query: 179 MRLMINFD 186 M + F Sbjct: 313 MSRFVRFR 320 >gi|238762413|ref|ZP_04623384.1| Type II secretion system protein [Yersinia kristensenii ATCC 33638] gi|238699398|gb|EEP92144.1| Type II secretion system protein [Yersinia kristensenii ATCC 33638] Length = 272 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 61/157 (38%), Gaps = 4/157 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 +K++I R L P +DI V++G+ + +++ + +++ Sbjct: 115 VKNIITSRNKSLLKSLPFFIDITAACVQSGMTIDSSLSYTAKKFELINADLSLIMLKVTR 174 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + L +I + E+ F + + G + E L LS+ +R+ + + + Sbjct: 175 RAEINGLESAIKEFHQSSTELEIRMFCSALQYSISFGATVYEQLIKLSQDMREMQLLVTE 234 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + AK + + + LV SP + +L Sbjct: 235 EKISKLTAKLTIPLFLFILIPFIILV--ISPSVLELL 269 >gi|20089131|ref|NP_615206.1| integral membrane protein [Methanosarcina acetivorans C2A] gi|19913998|gb|AAM03686.1| integral membrane protein [Methanosarcina acetivorans C2A] Length = 662 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/148 (12%), Positives = 54/148 (36%), Gaps = 1/148 (0%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R K + P+ L + +G+ +S+++ ++ + E +++ E G S S Sbjct: 444 RMRKIDERMPDLLRNLSSMNDSGILLSNSLKIMAESKMGILSKELKKLKEDLSWGNSTSR 503 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS-MEA 126 ++ ++ + S + ++ ++ L+ + ++ + +K + + + Sbjct: 504 ALMKLENNIRTATSSRVLHTLIKANESTSDIKNVLSITAEQVKSEERLKEERSSEMVVYV 563 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154 F V L + P + Sbjct: 564 VTIYVAFFVFLFIVYILAVYFFPESASF 591 >gi|167032060|ref|YP_001667291.1| general secretion pathway protein F [Pseudomonas putida GB-1] gi|166858548|gb|ABY96955.1| general secretion pathway protein F [Pseudomonas putida GB-1] Length = 400 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 56/191 (29%), Gaps = 20/191 (10%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + + AG+P+ DA+A + Q P V L L Sbjct: 53 RRQRLSRAQLCELTRQLATLIGAGIPLVDALATLERQLRQPALH-SVLVALRGSLAEGLG 111 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + S + P + + G L++ L L+ L + + K + + Sbjct: 112 LARSLARQGAPFTG---LYCALVEAGERSGRLAQVLTRLADHLEQVQRQQHKARTALIYP 168 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR----------------GHMLLGVAAA 170 + ++ + T V G ++G+A Sbjct: 169 TVLMGVSLAVVIGLMTFVVPKLTEQFAHAGQSLPLITSLLIGLSQGLVLAGPWMVGLALM 228 Query: 171 FMLIGIMVMRL 181 ++G ++R Sbjct: 229 LAVLGGWLLRK 239 Score = 36.3 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 14/128 (10%), Positives = 37/128 (28%), Gaps = 7/128 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + +G+ + +A+ V + +V + G SL ++ Q Sbjct: 270 RSLAILSGSGVALLEALHVATDTIGNRRIRLAMEQVRQQVQGGTSLHRALDA------CQ 323 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + + G L++ L ++ + E + + F Sbjct: 324 QFPPLLVNMVGSGEASGTLADMLERVADDQERGFARQVDTAMALFEPLMILVMGAVVLFI 383 Query: 140 VSTLVYFT 147 V ++ Sbjct: 384 VLAVLLPI 391 >gi|323494569|ref|ZP_08099673.1| general secretion pathway protein F [Vibrio brasiliensis LMG 20546] gi|323311172|gb|EGA64332.1| general secretion pathway protein F [Vibrio brasiliensis LMG 20546] Length = 408 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 46/149 (30%), Gaps = 7/149 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D + V++G+P+ + + + QS P + ++ Sbjct: 69 DLALITRQLATLVQSGMPLEECLKAVSEQSEKPRIRTMLLAVRSKVT----EGYTLADSL 124 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + G+L L L+ +R+ M++K+Q + ++ Sbjct: 125 ADYPHVFDDLFRSMVSAGEKSGHLDSVLERLADYAENRQKMRSKLQQALIYPV---VLVV 181 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 V+ L+ P + + + Sbjct: 182 FAVGIVAFLLAAVVPKIVGQFVQMGQELP 210 >gi|322370282|ref|ZP_08044841.1| type IV pilus biogenesis complex membrane subunit [Haladaptatus paucihalophilus DX253] gi|320549990|gb|EFW91645.1| type IV pilus biogenesis complex membrane subunit [Haladaptatus paucihalophilus DX253] Length = 680 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/155 (11%), Positives = 53/155 (34%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + K + + L + + GL + ++V + SS + EF R+ G+ + Sbjct: 453 RSRHKVIRKLSDDLRKLSSANDTGLTLLESVKNVAETSSGKLADEFDRIHAKVEYGMGMK 512 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + ++ +IS + ++ L ++ ++ ++ + ++ + Sbjct: 513 AALIEFNNRYHIPRLARTVKLISKAQEASSQITAVLTTAAQTSENQDDIARERRSRARMQ 572 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + V ++ M L G Sbjct: 573 VVIIIMTYLTLLAVMAILKTQFLDVMANLSASAGG 607 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 24/178 (13%), Positives = 57/178 (32%), Gaps = 7/178 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQHL 61 R + P+A+ + GL + + + + V EF+ V++ Sbjct: 140 RAGARKREINMLLPDAISFMYALSIGGLNQLEILEAMAKADDTYGEVSREFQSVVQETEY 199 Query: 62 G-LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + +I + P E+S F T + GGN++ L + + ++ Sbjct: 200 FDIDYRNAIRKRALETPSDELSQFFTDMLSIINSGGNMTRFLDDKKDKHMRTAKQEQELT 259 Query: 121 ALSMEAKASAWII----GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 ++E ++ L + ++ +L + L +L+ Sbjct: 260 LETLELFGEMYMTLSLFPLLLIIILVIMSMLGKAQEMLLYGTVYALIPLTGVGFLVLV 317 >gi|332304531|ref|YP_004432382.1| general secretion pathway protein F [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171860|gb|AEE21114.1| general secretion pathway protein F [Glaciecola agarilytica 4H-3-7+YE-5] Length = 406 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 22/176 (12%), Positives = 60/176 (34%), Gaps = 8/176 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + V + LP+ +A+ + QS ++ V G +L+++++ Sbjct: 67 DLALLTRQLATLVESSLPIEEALMAVAQQSEKPRQKNMMMAVRSKVVEGYNLADAMAEFP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G+L L L+ R+ ++++ + + Sbjct: 127 -----HVFDELFRAMVAAGEKSGHLDTVLNRLADYTEKRQQTRSQITQAMVYPTLMMFFA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA--FMLIGIMVMRLMINFDV 187 + + T+V G + + D + ++ + G+ ++ L+ V Sbjct: 182 MGIVILLLTVVVPKIVGQFDHMGQDLPTITKVLISVSEWMQNYGLALIALLAVVAV 237 >gi|209694069|ref|YP_002261997.1| type IV pilus, mannose-sensitive hemagglutinin protein [Aliivibrio salmonicida LFI1238] gi|208008020|emb|CAQ78158.1| type IV pilus, mannose-sensitive hemagglutinin protein [Aliivibrio salmonicida LFI1238] Length = 408 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 49/163 (30%), Gaps = 6/163 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVR 74 + +AG+P+ A+ + SS+ ++ V G SLS S+ + Sbjct: 69 LVIFCRQMYSLTKAGVPLLRAMNGLSQNSSNKILKKALDEVTSDLTNGRSLSVSMQQHP- 127 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 S + + G L +AL L+ + ++++ I Sbjct: 128 ----HVFSSLFVSMIHVGENTGRLDQALMQLASYYEQEMETRKRIKSAMRYPIFVLSFIL 183 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 F ++ V + + +A + + Sbjct: 184 LAMFVLNVKVIPQFTSMFARFGVELPLPTRILMATSSFFVNYW 226 Score = 38.2 bits (87), Expect = 0.52, Method: Composition-based stats. Identities = 9/135 (6%), Positives = 33/135 (24%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 +++G+P++ ++A+ + + + S Sbjct: 269 RAQMSRFSRTFALMLKSGVPLNQSLALSAEALGNKYLE-----NRLLEMKNGIESGTSMS 323 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G + + L +S + + +E + Sbjct: 324 ATAAQSGIFTPLVQQMIAVGEETGQIDDLLLEVSDFYDREVDYDLRTLTARIEPLLLVVV 383 Query: 133 IGSLPFCVSTLVYFT 147 G + + Sbjct: 384 AGMVLILALGIFLPM 398 >gi|311694494|gb|ADP97367.1| general secretion pathway protein F [marine bacterium HP15] Length = 403 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 58/161 (36%), Gaps = 9/161 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D + +++G+P+ A++ QS +RS + G +L++S+ Sbjct: 64 ADLALVTRQLATLIQSGIPIEQALSAAAQQSPKPRIRSMLIAIRAKVMEGYTLADSLGEF 123 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R P + G+L L L+ +R+ + K+Q ++ + Sbjct: 124 PRAFP-----RLYRSTVAAGEHAGHLDLVLNRLADYTENRQEARQKIQLAAIYPI---IL 175 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 V L+ + P ++V + + L +A + Sbjct: 176 SIVAIAIVVFLLTYVVPDIIDVFLKQGQELPTLTMAMLAVS 216 Score = 37.4 bits (85), Expect = 0.86, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 41/126 (32%), Gaps = 7/126 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +G+P+ +A+ + S+ +R E R G SL S+ + + P+ Sbjct: 276 LSILTTSGVPLVEAMRIAGEVLSNDFLRQELRDAARKVSEGGSLHRSLDQTGYFPPM--- 332 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L L +R+ + K E + + V Sbjct: 333 ---MLHMIASGEASGELDSMLERTARMQENTLQSKIAAIVGLFEPMMLLVMGVVVLIIVL 389 Query: 142 TLVYFT 147 ++ Sbjct: 390 AIMLPI 395 >gi|167821658|ref|ZP_02453338.1| bacterial type II secretion system protein F domain [Burkholderia pseudomallei 91] Length = 266 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + ++ +R P+ALD++V AG ++ A+ + + P+ EF + Sbjct: 106 LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 165 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + +++ M + L + T + Q G ++++L LSR R + + Sbjct: 166 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 225 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K + ++ + V+ + Sbjct: 226 EEKAAKLAPKMTLPMMLFVMPTVALI 251 >gi|13475422|ref|NP_106986.1| hypothetical protein mlr6486 [Mesorhizobium loti MAFF303099] gi|14026174|dbj|BAB52772.1| mlr6486 [Mesorhizobium loti MAFF303099] Length = 305 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 58/140 (41%), Gaps = 3/140 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF---RRVIE 57 + ++ + FP+ +D+++ AG+ + AV + + + + V Sbjct: 146 LDRFESRQKQVYRRGFPDFMDMMITCADAGMSLEAAVERVGAELAGTHKWLGIQLSIVTL 205 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G L E++ + + L E + + +LG +L++AL S +R ++ M A Sbjct: 206 QLRAGKPLREALRELADRIGLDEARALAVLFRQSEELGTSLTDALRIYSDEMRTQRIMNA 265 Query: 118 KVQALSMEAKASAWIIGSLP 137 + +A ++ K + + Sbjct: 266 EERANALPVKMMIPLGLCIF 285 >gi|167738668|ref|ZP_02411442.1| bacterial type II secretion system protein F domain [Burkholderia pseudomallei 14] Length = 253 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + ++ +R P+ALD++V AG ++ A+ + + P+ EF + Sbjct: 93 LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 152 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + +++ M + L + T + Q G ++++L LSR R + + Sbjct: 153 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 212 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K + ++ + V+ + Sbjct: 213 EEKAAKLAPKMTLPMMLFVMPTVALI 238 >gi|27364323|ref|NP_759851.1| general secretion pathway protein F [Vibrio vulnificus CMCP6] gi|37678400|ref|NP_933009.1| type II secretory pathway, component EpsF [Vibrio vulnificus YJ016] gi|320157715|ref|YP_004190094.1| general secretion pathway protein E [Vibrio vulnificus MO6-24/O] gi|27360441|gb|AAO09378.1| general secretion pathway protein F [Vibrio vulnificus CMCP6] gi|37197139|dbj|BAC92980.1| type II secretory pathway, component EpsF [Vibrio vulnificus YJ016] gi|319933027|gb|ADV87891.1| general secretion pathway protein E [Vibrio vulnificus MO6-24/O] Length = 405 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 22/172 (12%), Positives = 59/172 (34%), Gaps = 8/172 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 + I V++G+P+ + + + Q+ +R V G +L++S+S Sbjct: 66 ELSLITRQISTLVQSGMPLEECLKAVSDQAEKPRIRGMLAAVRAKVTEGYTLADSLSDYP 125 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G+L L L+ +R+ M++K+ + Sbjct: 126 -----HIFDELYRSMVAAGEKSGHLDAVLERLADYCENRQKMRSKLLQAMIYPVVLVVFA 180 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMI 183 ++ + V + + + LL + G++++ ++ Sbjct: 181 VTIVAFLLATVVPKIVEPIIQMGQELPQSTQFLLAASEFVQEWGLLLLGSIV 232 >gi|86146570|ref|ZP_01064892.1| Type II secretory pathway, component EpsF [Vibrio sp. MED222] gi|218708201|ref|YP_002415822.1| type II secretory pathway subunit EpsF [Vibrio splendidus LGP32] gi|85835627|gb|EAQ53763.1| Type II secretory pathway, component EpsF [Vibrio sp. MED222] gi|218321220|emb|CAV17170.1| Type II secretory pathway, component EpsF [Vibrio splendidus LGP32] Length = 406 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 23/175 (13%), Positives = 53/175 (30%), Gaps = 6/175 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D I V++G+P+ + + + QS P + ++ Sbjct: 67 DLALITRQISTLVQSGMPLEECLKAVAEQSEKPRIRTMLLAVRSKVT----EGYSLADSL 122 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + G+L L L+ +R+ M++K+ + Sbjct: 123 SDYPHIFDELFRAMVAAGEKSGHLDAVLERLADYAENRQKMRSKLLQAMIYPVVLVVFAV 182 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMINFDV 187 ++ + V + + + LL + GI ++ L+I V Sbjct: 183 TIVSFLLATVVPKIVEPIIQMGQELPQSTQFLLASSEFIQNWGIQLLLLIIGVIV 237 >gi|251795274|ref|YP_003010005.1| type II secretion system protein [Paenibacillus sp. JDR-2] gi|247542900|gb|ACS99918.1| type II secretion system protein [Paenibacillus sp. JDR-2] Length = 282 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 68/157 (43%), Gaps = 8/157 (5%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQ 59 L+++R + + P AL ++ V AG PV A + + P+ E+ RV+ Sbjct: 129 RLVERRKQAIVSELPEALSKLMLLVGAGEPVLQAFSRCLEGKDPAVQPLYKEWDRVVIAL 188 Query: 60 HLGLSLSESISRMVRYMPLQEVS-FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G S S ++ R R +QEVS F + ++ + G AL +S L +++ A+ Sbjct: 189 RNGESFSTALERFNRSCAVQEVSIFTTVILLNYRRGGDQFVLALREISYSLWEKRKAVAR 248 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + ++ L + L+ F + M ++ Sbjct: 249 SRGEEAS----SKLVFPLVGILLVLMVFVAAPAMLLM 281 >gi|148241117|ref|YP_001226274.1| Type II secretory pathway, component PulF [Synechococcus sp. RCC307] gi|147849427|emb|CAK26921.1| Type II secretory pathway, component PulF [Synechococcus sp. RCC307] Length = 410 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 58/156 (37%), Gaps = 6/156 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + V AG+P+ ++ ++ Q + +R+ + G SL ++ R + Sbjct: 75 FASQMAALVSAGVPIVRSLEILAEQQKLPMFKRALQRLSLDVNQGSSLGSALRRWPQ--- 131 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 S + + GG L E L L+++L D ++ +++ I ++ Sbjct: 132 --VFDALSVAMVEAGEAGGVLEEVLKRLAKLLEDNAKLQNQIRGALGYPVTVLVIAIAVF 189 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 ++ + T G L + L V + +L Sbjct: 190 LGMTIFLIPTFAGIFEDLGAELPAFTQLMVNLSALL 225 Score = 39.7 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 17/136 (12%), Positives = 44/136 (32%), Gaps = 7/136 (5%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRY 75 RAG+P+ A+ ++ + V +E + G +LS +++R Sbjct: 277 AQFCRTFSSLTRAGVPILMALDIVRDTVGNRVLAEAIESAKVEVQEGGTLSLALAR---- 332 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + + + G + L+ ++ D K +E + G Sbjct: 333 --RKVFPSMAMSMLLIGEESGEVDAMLSKVADFYEDEIAATVKAMTAMLEPAMIVVVGGI 390 Query: 136 LPFCVSTLVYFTSPGY 151 + + + + Sbjct: 391 VGSILLAMYLPMFSVF 406 >gi|323705271|ref|ZP_08116846.1| Type II secretion system F domain [Thermoanaerobacterium xylanolyticum LX-11] gi|323535173|gb|EGB24949.1| Type II secretion system F domain [Thermoanaerobacterium xylanolyticum LX-11] Length = 404 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 56/170 (32%), Gaps = 6/170 (3%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSE 67 + D + AG+P+ ++A + Q + ++ V E G +LSE Sbjct: 59 RKVKVKDIAVFCRQFSVLINAGIPIVASLATLSEQVENKRLKKALTDVYEDVQKGKTLSE 118 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 S+ + P+ + ++ G L + L ++ N+ K+++ Sbjct: 119 SMRKHPDVFPM-----LLFNMIEAGEVSGTLDKVLNEMAEHFEKENNLNQKIKSALAYPA 173 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + + + T V T G L+ + + + Sbjct: 174 IVSIVAVLVVVFLVTNVLPTFVGMFKNAGAQLPTPTLILLGLSDSIAHYW 223 Score = 35.5 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 11/133 (8%), Positives = 37/133 (27%), Gaps = 5/133 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+P+ ++++ +V + + + ++ + Sbjct: 272 FTRTLSTLIGSGIPLMESLS-VVEKVVGNTVVANGLKKAEEEIKRGNGLALP----LKKI 326 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G+L L + + +E + + F Sbjct: 327 DIFPPMVIQMIKVGEDSGSLDSILKKTADFYDSEVDTAVSQMTTLIEPLIIVLLASIVGF 386 Query: 139 CVSTLVYFTSPGY 151 V ++V Y Sbjct: 387 IVVSIVMPMFQMY 399 >gi|167845808|ref|ZP_02471316.1| bacterial type II secretion system protein F domain [Burkholderia pseudomallei B7210] gi|167894380|ref|ZP_02481782.1| bacterial type II secretion system protein F domain [Burkholderia pseudomallei 7894] Length = 237 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + ++ +R P+ALD++V AG ++ A+ + + P+ EF + Sbjct: 77 LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 136 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + +++ M + L + T + Q G ++++L LSR R + + Sbjct: 137 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 196 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K + ++ + V+ + Sbjct: 197 EEKAAKLAPKMTLPMMLFVMPTVALI 222 >gi|294787152|ref|ZP_06752405.1| conserved hypothetical protein [Parascardovia denticolens F0305] gi|294484508|gb|EFG32143.1| conserved hypothetical protein [Parascardovia denticolens F0305] Length = 269 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 60/181 (33%), Gaps = 6/181 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 + R K + + ++ + G + DA + V + + L Sbjct: 35 RARLRVKKTDAG--DFIAELISLLHNGSGMVDA----CQEMGGMVFAIPELTDDRMKAVL 88 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + R R + + + LG + S+ L + + + K ++ Sbjct: 89 ARRCGHGRSDRAYLTRLARQLVASCKLSATLGCSASQCLEAVGVEHKRYLAVADKKRSAL 148 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + ++ LP V TS VL P G + L +AA +G+ ++ ++ Sbjct: 149 SIPRLTVKVLLILPLLVLGGSQLTSARTFQVLFMRPVGWLCLSLAAILYGLGLRWVKRLL 208 Query: 184 N 184 Sbjct: 209 R 209 >gi|262360786|gb|ACY57507.1| hypothetical protein YPD4_0598 [Yersinia pestis D106004] Length = 193 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 4/157 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 +K+ + KRT L P +DI V++G+ + +++ + + + Sbjct: 33 IKNALTKRTNNLLKSLPFFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTK 92 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + L +I + Y P E+ F + + G + E L +LS+ +R+ + + + Sbjct: 93 RAEINGLENAIKELQYYSPAIEMKMFCSTLQYSISFGSTVYEQLTHLSQDMREMQLLMTE 152 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + K + + + LV SP + +L Sbjct: 153 ESISKLSTKLTLPLFLFILIPFVLLV--ISPSILELL 187 >gi|259506084|ref|ZP_05748986.1| membrane protein [Corynebacterium efficiens YS-314] gi|259166372|gb|EEW50926.1| membrane protein [Corynebacterium efficiens YS-314] Length = 224 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 64/187 (34%), Gaps = 6/187 (3%) Query: 3 HLIKKRTAKFLDD----FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 L + RT++ L + + ++RAG P++DA+ + ++ S + Sbjct: 32 RLKRGRTSRVTRAQTTVLAGFLGLCIGNLRAGAPMADAMDHALAHTTGSTGSAGPTTVAL 91 Query: 59 QHLGLSLSESISRMVRYM--PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 + S + P ++ T+ V + G L L L L ++ + Sbjct: 92 TAAARRVRSGGSGAAVLIDAPTMDLQRLGTIWEVSERHGIPLVRLLDQLKHRLEAQERHR 151 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 A +A+A I+ LP + + L G +LL G Sbjct: 152 QASAAQLQGPQATAVILALLPLAGVLMGTAMGADPIGFLTGGGVGGILLITGVLLSAAGF 211 Query: 177 MVMRLMI 183 ++ ++ Sbjct: 212 ILTEKIL 218 >gi|148642656|ref|YP_001273169.1| type II secretion system protein, GspF [Methanobrevibacter smithii ATCC 35061] gi|148551673|gb|ABQ86801.1| type II secretion system protein, GspF [Methanobrevibacter smithii ATCC 35061] Length = 305 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 69/170 (40%), Gaps = 2/170 (1%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + P AL + ++AG + D + + + + EF+RV++ G S +++ M Sbjct: 132 ELPYALRHMATELKAGKGLHDTLLTVSIANYGSLSGEFKRVLKEIKYGKSSEDALMEMSL 191 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK--ASAWI 132 + + +S I ++GGNL+ +L ++ + +K K + + +I Sbjct: 192 RVSSEGLSRAVHQIVGTLRVGGNLANSLNVIAEDISFDMQIKLKEYSQKLNGFILIYTFI 251 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 P + ++ S +++ + M + ++ + ++ M Sbjct: 252 AILAPVIILIMLMAASTVVGDIVSEEMVFIMYMFFFPLIVVFMALFIKRM 301 >gi|71734185|ref|YP_274397.1| general secretion pathway protein GspF [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554738|gb|AAZ33949.1| general secretion pathway protein GspF [Pseudomonas syringae pv. phaseolicola 1448A] Length = 403 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 20/181 (11%), Positives = 55/181 (30%), Gaps = 15/181 (8%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + + + AGLP+ +A+ V Q+ + + + + Sbjct: 63 DADLASVTRQLASLLSAGLPLDEALGATVEQAE-RQHIIQTLGAIRTDVRSGMRLAEALA 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R + + + G L+ + L+ + +R ++ K+ + + Sbjct: 122 ARPRDFPD---IYRALIGAGEESGGLARVMERLADYIEERNGLRGKILTAFIYPGVVGLV 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-----------IGIMVMRL 181 ++ + + V + D G L +AA+ + + + Sbjct: 179 SIAIVIFLLSYVVPQIVSAFSQARQDLPGLTLAMLAASDFIRAWGLVCLGVLLAALWGWR 238 Query: 182 M 182 + Sbjct: 239 I 239 >gi|330989444|gb|EGH87547.1| general secretion pathway protein GspF [Pseudomonas syringae pv. lachrymans str. M301315] Length = 403 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 19/181 (10%), Positives = 55/181 (30%), Gaps = 15/181 (8%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + + + AGL + +A+ V Q+ + + + + Sbjct: 63 DADLASVTRQLASLLSAGLSLDEALGATVEQAE-RQHIIQTLSAIRTDVRSGMRLAEALA 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R + + + G+L+ + L+ + +R ++ K+ + + Sbjct: 122 ARPRDFPD---IYRALIGAGEESGDLARVMERLADYIEERNGLRGKILTAFIYPGVVGLV 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-----------IGIMVMRL 181 ++ + + V + D G L +AA+ + + + Sbjct: 179 SIAIVIFLLSYVVPQIVSAFSQARQDLPGLTLAMLAASDFIRAWGLVCLGVLLAALWGWR 238 Query: 182 M 182 + Sbjct: 239 I 239 Score = 34.3 bits (77), Expect = 7.9, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 37/129 (28%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ A+ S+ R + + E ++ V Sbjct: 272 FASTLAILGAAGVPLLRALDAARQTLSND-----RLSLAVSEATSRVREGVNLAVALRME 326 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G+L L ++ L +A +E + G + Sbjct: 327 KVFPPLLIHLIASGEKTGSLPPMLDRAAQTLSRDIERRALGMTALLEPLMIVIMGGVVLV 386 Query: 139 CVSTLVYFT 147 V ++ Sbjct: 387 IVMAVMLPI 395 >gi|167622409|ref|YP_001672703.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4] gi|167352431|gb|ABZ75044.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4] Length = 420 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 20/175 (11%), Positives = 53/175 (30%), Gaps = 9/175 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMV 73 D I + AG+P+ + ++ E ++ G+ LS+S+ Sbjct: 81 DIAMMTRQIATMLAAGVPIVTTLELLGKGHEKAKMRELLATIVNDVQSGIPLSDSLR--- 137 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G+L ++ + +K+K++ A + Sbjct: 138 --PHRKYFDDLYVDLVAAGEHSGSLDAVFDRIATYREKSEALKSKIKKAMFYPAAVVIVA 195 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG---IMVMRLMINF 185 + + V N + ++ + L I V+ +++ Sbjct: 196 IMVTALLLLFVVPQFEDIFNGFGAELPAFTQFIISISRWLQASWYIFVIAIIVGI 250 >gi|293400854|ref|ZP_06644999.1| putative type II secretion pathway protein XcpS [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305880|gb|EFE47124.1| putative type II secretion pathway protein XcpS [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 397 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 16/167 (9%), Positives = 58/167 (34%), Gaps = 6/167 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + + +G+ + A++++V Q + +++ + + G++LS ++ Sbjct: 58 KELSDFSRQLGTMIGSGVSLIRAISILVQRQKNPKIKAIYTDIYRKLQQGMTLSYAMEEQ 117 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P + + G + ++ +K KV+ + + Sbjct: 118 GKAFP-----ELMINMYRTGETSGQMERVAMTMALQYEKDNRIKGKVRNAMIYPIILICV 172 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + V T + + N + ++ ++ A + ++ Sbjct: 173 TIFVVIGVFTFIIPSFSKVFNGMELPMITKIVNAISEAMLAYWYWML 219 >gi|291279633|ref|YP_003496468.1| general secretion pathway protein F [Deferribacter desulfuricans SSM1] gi|290754335|dbj|BAI80712.1| general secretion pathway protein F [Deferribacter desulfuricans SSM1] Length = 405 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 63/173 (36%), Gaps = 9/173 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQ 59 +K+L + + L++ AG+PV + + QS ++ + ++ Sbjct: 53 LKNLKSRFSKVKLEELIVFTRQFATLFEAGIPVIKILERLSTQSFTEKLTQSIHQIKNDV 112 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 GL LS + +R S + + GG L L L+ IL K ++ Sbjct: 113 DAGLPLSNAFNR-----QKHIFSPLYVNMIKVGEEGGVLDITLQRLAAILESELETKNRI 167 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 + + K +IG++ S LV F P + ++ L ++ Sbjct: 168 KTATRYPK---IVIGAIIIAFSILVTFVIPKFASMFAKFNTELPLPTKILIWI 217 Score = 42.8 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 16/133 (12%), Positives = 46/133 (34%), Gaps = 7/133 (5%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 ++ R+G+ ++ + ++ ++ ++ E + E G +++ + R Sbjct: 271 LSRISRVLALLYRSGINITASFDIVSEITGNNILKRELLYIKEQISRGSNIASAFRR--- 327 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + + G L E L LS + + K + ++E +I G Sbjct: 328 ---SKYFPPVVSDMVESGEETGRLDEMLIKLSDYYDEEVDYSIKTLSQALEPILLVFIAG 384 Query: 135 SLPFCVSTLVYFT 147 + + Sbjct: 385 MVLLLALGVFLPM 397 >gi|320324666|gb|EFW80740.1| general secretion pathway protein GspF [Pseudomonas syringae pv. glycinea str. B076] Length = 403 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 20/181 (11%), Positives = 56/181 (30%), Gaps = 15/181 (8%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + + + AGLP+ +A+ V Q+ + + + + Sbjct: 63 DADLASVTRQLASLLSAGLPLDEALGATVEQAE-RQHIIQTLGAIRTDVRSGMRLAEALA 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R + + + G+L+ + L+ + +R ++ K+ + + Sbjct: 122 ARSRDFPD---IYRALIGAGEESGDLARVMERLADYIEERNGLRGKILTAFIYPGVVGLV 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-----------IGIMVMRL 181 ++ + + V + D G L +AA+ + + + Sbjct: 179 SIAIVIFLLSYVVPQIVSAFSQARQDLPGLTLAMLAASDFIRAWGLVCLGVLLAALWGWR 238 Query: 182 M 182 + Sbjct: 239 I 239 Score = 34.3 bits (77), Expect = 8.0, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 37/129 (28%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ A+ S+ R + + E ++ V Sbjct: 272 FASTLAILGAAGVPLLRALDAARQTLSND-----RLSLAVSEATSKVREGVNLAVALRME 326 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G+L L ++ L +A +E + G + Sbjct: 327 KVFPPLLIHLIASGEKTGSLPPMLDRAAQTLSRDIERRALGMTALLEPLMIVIMGGVVLV 386 Query: 139 CVSTLVYFT 147 V ++ Sbjct: 387 IVMAVMLPI 395 >gi|282863648|ref|ZP_06272706.1| type II secretion system protein [Streptomyces sp. ACTE] gi|282561349|gb|EFB66893.1| type II secretion system protein [Streptomyces sp. ACTE] Length = 294 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 62/176 (35%), Gaps = 2/176 (1%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 + + +V +RAG A+ G+ + S V+ G + E+ Sbjct: 116 RERAAEAVTMLCGAVVGELRAGREPGRALLTAGGE--GALGSAEAAVLAAARFGGDVPEA 173 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + R + ++ + V G L+ LA + LR + + +++A A + Sbjct: 174 LRRASLVPGFEGLAGMAACWRVAVDGGAGLATGLARIEHALRAERRGREELRAQLAGAWS 233 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + ++ LP L + VL++ P G L + G+ ++ Sbjct: 234 TVVVLALLPVVGLGLGAALGADPLRVLLHSPGGLACLVAGSLLEAAGLFWATRIVR 289 >gi|262402016|ref|ZP_06078581.1| general secretion pathway protein F [Vibrio sp. RC586] gi|262351988|gb|EEZ01119.1| general secretion pathway protein F [Vibrio sp. RC586] Length = 406 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 57/172 (33%), Gaps = 8/172 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + V++G+P+ + + + QS +R+ V G +LS+S+ Sbjct: 67 DLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G+L L L+ +R+ M++K+Q + Sbjct: 127 -----HVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFA 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183 + + V G + LL + GI ++ ++ Sbjct: 182 VGIVAFLLAAVVPKIVGQFVQIGQALPASTQFLLDASDFLQHWGIWLLISLM 233 >gi|227113971|ref|ZP_03827627.1| type IV pilin biogenesis protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 401 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 59/171 (34%), Gaps = 14/171 (8%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 + ++ + ++AGLP+ +A+ ++ Q R R V G SLSE++ Sbjct: 58 REQLGESIKQLAALLQAGLPLLEALKLVSEQHDRPGWRCVLRDVRTHVAQGSSLSEALQE 117 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P+ + +L G L L++ + ++ KV + Sbjct: 118 YPHIFPV-----LYRSLIAVGELTGKLDACCLQLAQQQEKQSRLQQKVIKALRYP---CF 169 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHM---LLGVAAAFMLIGIM 177 ++ ++ P + + + P LL +A G++ Sbjct: 170 VLAIAMLVSMMMLTLVLPEFATLYSSFDTPLPWFTRQLLYLAEIISDYGLI 220 >gi|52550504|gb|AAU84353.1| conserved hypothetical protein [uncultured archaeon GZfos9D8] Length = 322 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 65/151 (43%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +K + K FP+ L + R+G+P+ A+ ++ + + + G++ Sbjct: 98 VKTKIRKIDAHFPSLLGDLAHLRRSGMPLGAAMGLVAQGQYGVLTKPIKWIDSQMTWGVT 157 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++++R + P + ++I S+ GG + E L ++ + K ++ K ++ + Sbjct: 158 FEDALARFAKRYPTPLIRRSISIIIEASRAGGEIGEILEAVAEDAHELKILEVKRKSETT 217 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A +++ + V ++ + M V+ Sbjct: 218 PYLAVSYLSYFVFVAVIMILCTSFLPMMEVM 248 >gi|330810078|ref|YP_004354540.1| type II secretion system protein F [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378186|gb|AEA69536.1| putative type II secretion system protein F [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 403 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 22/168 (13%), Positives = 60/168 (35%), Gaps = 6/168 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 +D A + + A LP+ A++ V Q+ + V G+ L+E+++ Sbjct: 63 DNDLAWATRQLASLLGASLPLEAALSATVEQAERKHIAQTLSAVRADVRSGMRLAEALAA 122 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 R + + + G+L++ + L+ + +R N++ K+ + Sbjct: 123 RPR-----DFPEIYRALIAAGEESGDLAQVMERLADYIEERNNLRGKILTAFIYPGVVGL 177 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + ++ + + V + D + + A+ + + Sbjct: 178 VSVAIVIFLLSYVVPQVVSAFSQARQDLPALTVAMLTASDFIRAWGWL 225 Score = 34.3 bits (77), Expect = 7.1, Method: Composition-based stats. Identities = 15/129 (11%), Positives = 35/129 (27%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ A+ S+ S+ + E ++ Sbjct: 272 FASTLAILGGAGVPLLRALEAARQTLSNDRLSQSV-----SEATAKVREGVNLAAALRVE 326 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G L L ++ L +A +E + G + Sbjct: 327 KVFPPVLIHLIASGEKTGCLPPMLERAAQTLSRDIERRAMGMTALLEPLMIVVMGGVVLV 386 Query: 139 CVSTLVYFT 147 V ++ Sbjct: 387 IVMAVLLPI 395 >gi|261251276|ref|ZP_05943850.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio orientalis CIP 102891] gi|260938149|gb|EEX94137.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio orientalis CIP 102891] Length = 288 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 59/149 (39%), Gaps = 4/149 (2%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQHLGLSLSE 67 P LD++ V G+ + ++ + + + D + RV + + L + Sbjct: 142 KHISSRLPFLLDLMNVCVHTGMTIESSLDYLSKELVTVDRNLAYVVRVTVDRSRLVGLEK 201 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ +P E F + Q G ++ LA L+ +R+ M + + M AK Sbjct: 202 ALEEFYDLVPTSESQSFVMTMVQSLQFGSSIGPVLATLATDIRELNMMDLEERIGKMGAK 261 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 S +I + + L+ PG + +L+ Sbjct: 262 MSIPLIAFIMVPIVVLIAA--PGILRMLM 288 >gi|188586711|ref|YP_001918256.1| type II secretion system protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351398|gb|ACB85668.1| type II secretion system protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 404 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 47/155 (30%), Gaps = 9/155 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 D ++AG+ V D++ + Q + V E+ G SL+ES Sbjct: 65 SRDLMIFSRQFATMIKAGVTVLDSLESLSEQMDSKKLSRGLVNVTESLRGGNSLAESFHE 124 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + G L + L ++ + K+++ Sbjct: 125 -----QKDVFPELFVNMISAGEEAGALEDVLERMAVHYEKEHQLLEKIKSAMTYPV---I 176 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 ++G V LV + P + + LL Sbjct: 177 LLGVAFLVVYFLVTYVLPEFAGIFAGMDVELPLLT 211 >gi|154250530|ref|YP_001411354.1| type II secretion system protein [Parvibaculum lavamentivorans DS-1] gi|154154480|gb|ABS61697.1| type II secretion system protein [Parvibaculum lavamentivorans DS-1] Length = 315 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 55/143 (38%), Gaps = 3/143 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQHL 61 +R + P LDI++ ++ AG+ V + + +++ RR I Sbjct: 147 ADRRANTIRRELPPVLDIMLMALDAGVSVDQCMRYVAGVVRRTAPVTGKVLRRHIADIDA 206 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ ++ R+ + + L E + I GG LS L S L D++ A+ Q Sbjct: 207 GMPYDAALDRLGQRLGLDEGQDLAATIKQALFQGGELSTTLRRFSVDLSDKRMGMAREQV 266 Query: 122 LSMEAKASAWIIGSLPFCVSTLV 144 + + +I + ++ Sbjct: 267 GRKAPQLTLVMILFFMPVLLIVL 289 >gi|85711971|ref|ZP_01043025.1| Flp pilus assembly protein TadC [Idiomarina baltica OS145] gi|85694157|gb|EAQ32101.1| Flp pilus assembly protein TadC [Idiomarina baltica OS145] Length = 264 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 62/145 (42%), Gaps = 1/145 (0%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + + + A+ + P+ D++ + +GLP+ A+ + SS + +E V + Sbjct: 108 QRQFRSKQARIYRELPDFSDLLAMMLASGLPLIPALDRVSKASSMGYLANEISYVGQQIR 167 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L+ + + + + +S + +++ Q G +L+EAL S LRD + A+ + Sbjct: 168 RGRDLTSAFTGLADLYRVNALSEWCKLLNRGYQQGNSLTEALLFFSEQLRDEQLNLAEKK 227 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145 A K ++ ++ Sbjct: 228 AQEAPVKLLLPLLSCFFPVNFLVIL 252 >gi|126176110|ref|YP_001052259.1| type II secretion system protein [Shewanella baltica OS155] gi|125999315|gb|ABN63390.1| type II secretion system protein [Shewanella baltica OS155] Length = 422 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 17/172 (9%), Positives = 50/172 (29%), Gaps = 8/172 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMV 73 D I + AG+P+ + ++ E ++ G+ LS++ Sbjct: 83 DIAVITRQIATMLAAGVPLVTTIELLGRGHEKAKVRELLGNILSEIQSGIPLSDA----- 137 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G+L ++ + +K+K++ A + Sbjct: 138 MRPHRRYFDELYVDLVAAGEHSGSLDLVFDRVATYREKSEALKSKIKKAMFYPAAVVIVA 197 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183 + + V + ++L ++ + + +I Sbjct: 198 ILVTSLLLLFVVPQFEEIFKGFGAELPAFTQLVLHISRGLQSSWYIFLAAII 249 >gi|158521062|ref|YP_001528932.1| general secretion pathway protein F [Desulfococcus oleovorans Hxd3] gi|158509888|gb|ABW66855.1| general secretion pathway protein F [Desulfococcus oleovorans Hxd3] Length = 409 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 18/166 (10%), Positives = 54/166 (32%), Gaps = 6/166 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMV 73 + A + V +G P+ A+ ++ Q+ S ++ R+ E+ G S +++++ Sbjct: 71 ELATATRQLATLVGSGFPLVSAIYTLIPQAGSAALKKALSRIKESVEEGNSFADALAGFP 130 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G L L L+ + ++ + ++ A+ + Sbjct: 131 DIFSP-----IYINMVRAGEASGTLEVVLERLADLQETQQAQRNRITAILAYPLVMTVLG 185 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + + + + +A + L + Sbjct: 186 SGVLVFLLVKIVPQLVSVFEDMNQVLPVPTRIVIATSDFLQSYWWV 231 >gi|115361041|ref|YP_778178.1| type II secretion system protein [Burkholderia ambifaria AMMD] gi|115286369|gb|ABI91844.1| type II secretion system protein [Burkholderia ambifaria AMMD] Length = 323 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 69/162 (42%), Gaps = 4/162 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + I R +DFP+ALD++ V AGL + A+ + + S+ V E ++ Sbjct: 156 LSRRIATRQRVIFEDFPDALDLLTVCVEAGLGLDAALMRVSEELRFRSEVVAGELDLLLL 215 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ ++++ F ++ + G +++E+L LS +LR R+ M+A Sbjct: 216 EMRSGFTKETALRNFALRTGVEDIESFCAMLIQADRFGTSIAESLRVLSDMLRTRRRMRA 275 Query: 118 KVQALSME-AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158 + +A + I P + L+ VL+ Sbjct: 276 EERAAKIALKLLFPLIFNIFPALMCVLLGPAMIHVYRVLLPS 317 >gi|293408196|ref|ZP_06652036.1| hypothetical protein ECEG_03130 [Escherichia coli B354] gi|291472447|gb|EFF14929.1| hypothetical protein ECEG_03130 [Escherichia coli B354] Length = 400 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 55/182 (30%), Gaps = 22/182 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLADKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + G +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPVLTQGIMTLADFSGEWGWLLVLFGFLLAIANKLLM 235 Query: 180 RL 181 R Sbjct: 236 RR 237 >gi|323529156|ref|YP_004231308.1| Type II secretion system F domain-containing protein [Burkholderia sp. CCGE1001] gi|323386158|gb|ADX58248.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1001] Length = 293 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 68/146 (46%), Gaps = 1/146 (0%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + + ++R A+ L LD + +V AGL ++ A+ V + P R E V+ Sbjct: 136 RDVRRRRVAQILKHLSIYLDFLTLAVEAGLNINGAIQKAVEKGPAGPFRWELEHVLRDLK 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 GL+ +E++ R+ + ++EV+ F + ++G L+++L S R + +A+ Q Sbjct: 196 SGLNRTEALRRLDDRLRIKEVTNFVGAVVQAERMGAGLAKSLRFQSEQRRSERFQRAEKQ 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146 A+ K ++ + ++ F Sbjct: 256 AMEAPVKLVFPLLVFIFPITFIVLGF 281 >gi|229590683|ref|YP_002872802.1| general secretion pathway protein F/S [Pseudomonas fluorescens SBW25] gi|229362549|emb|CAY49456.1| general secretion pathway protein F/S [Pseudomonas fluorescens SBW25] Length = 402 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 60/183 (32%), Gaps = 19/183 (10%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 +D A + + A LP+ A++ V Q+ + V G+ L+E+++ Sbjct: 62 DNDLAWATRQLASLLGASLPLEAALSATVEQAEKKHIAQTLSAVRADVRGGMRLAEALAT 121 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 R + + + G+L++ + L+ + +R N+++K+ + Sbjct: 122 RPR-----DFPAIYRALIAAGEESGDLAQVMERLADYIEERNNLRSKILTAFIYPGVVGL 176 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL------------GVAAAFMLIGIMVM 179 + ++ + + V + D G L M G Sbjct: 177 VSIAIVIFLLSYVVPQVVSAFSQARQDLPGLTLAMLNASDFIRAWGVWCFGLMAAG-FWG 235 Query: 180 RLM 182 + Sbjct: 236 WRL 238 Score = 35.9 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 14/129 (10%), Positives = 33/129 (25%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ A+ S+ S + E ++ Sbjct: 271 FASTLAILGAAGVPLLRALEAARQTLSNDRLSLSV-----SDATAKVREGVNLAPALRVE 325 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G+L L ++ L +A +E + + Sbjct: 326 NVFPPVLIHLIASGEKTGSLPPMLERAAQTLSRDIERRAMGMTALLEPLMIVVMGAVVLV 385 Query: 139 CVSTLVYFT 147 V ++ Sbjct: 386 IVMAVLLPI 394 >gi|169831115|ref|YP_001717097.1| type II secretion system protein [Candidatus Desulforudis audaxviator MP104C] gi|169637959|gb|ACA59465.1| type II secretion system protein [Candidatus Desulforudis audaxviator MP104C] Length = 402 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 76/189 (40%), Gaps = 17/189 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQ 59 ++ + + L D + + AG+P++ A+ + Q ++ +R+ V Sbjct: 50 VRGAVFRSRKVGLGDLTLFSRQLTSMLDAGIPLTRALFTLSKQIANPTLRNAVSDVARNV 109 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G S S+++S S ++ ++GG LSEAL+ LS L K+++ V Sbjct: 110 EGGQSFSDALSAHP-----GIFSTLFVSMTRAGEVGGFLSEALSRLSTQLEQEKSIRDHV 164 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG---- 175 ++ S A ++G V ++YF P +M P G +L +++ Sbjct: 165 RSASFYPIA---VLGFAGVVVLAMLYFLVPVFMQFF---PEGMVLPLPTRVVVVLSNSLH 218 Query: 176 -IMVMRLMI 183 + + Sbjct: 219 QWWFIWAIT 227 Score = 35.9 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 41/139 (29%), Gaps = 7/139 (5%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + + G+P+ A+ S V +IE G +L+ + Sbjct: 267 MARFARTLATLLTGGIPILQALEASGPASGSQKVAEAVHGIIEQIQEGKNLAGPMGDSGI 326 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + P+ + + G L + L ++ + AK +E I Sbjct: 327 FPPM------MVDMVAVGEESGTLPDLLGRIAAFYEEEVATMAKGLTALLEPLMLVVIGI 380 Query: 135 SLPFCVSTLVYFTSPGYMN 153 + V +L ++ Sbjct: 381 IIAVVVISLYLPIFTAVIS 399 >gi|331004876|ref|ZP_08328293.1| MSHA biogenesis protein MshG [gamma proteobacterium IMCC1989] gi|330421330|gb|EGG95579.1| MSHA biogenesis protein MshG [gamma proteobacterium IMCC1989] Length = 408 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 50/174 (28%), Gaps = 6/174 (3%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSL 65 KR ++ + +AGLP+ + + SS P++ V G+SL Sbjct: 62 KRKKVSDEELVMFCRQMYTINKAGLPLMQGLESLSVSISSGPLQECLIDVTHRLETGVSL 121 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S + + + + G L A + + K +++ Sbjct: 122 SSA-----MGYHRHIFNNLFLGMIKIGEETGKLDNIFAQMGVYISRDIETKKSIKSALRY 176 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + F V+ +V + + + + + + + Sbjct: 177 PSFVLSAMVVALFVVNLMVIPAFADMFSRFDAELPLPTRILIGTSQFFVDYWWL 230 >gi|312135609|ref|YP_004002947.1| Type II secretion system F domain-containing protein [Caldicellulosiruptor owensensis OL] gi|311775660|gb|ADQ05147.1| Type II secretion system F domain protein [Caldicellulosiruptor owensensis OL] Length = 403 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 18/147 (12%), Positives = 48/147 (32%), Gaps = 9/147 (6%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSES 68 + D + AG+ + + V+ Q + E G LS + Sbjct: 59 KATVKDLSIFCRQFATMLSAGISILSCLDVLKQQYKGRSFGKVIDDLYEKVERGTLLSAA 118 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + R+ P + ++ G++ +++ ++ ++ K+ M Sbjct: 119 MREHPRFFPP-----ILVNMIEAGEVAGSIDKSMDKMAVHFEKELKLRQKIVNALMYPA- 172 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVL 155 +IG + L+ + P ++ + Sbjct: 173 --IVIGVAVIVLIILLTYVIPTFVGLF 197 Score = 42.4 bits (98), Expect = 0.028, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 40/131 (30%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+ + A+ S+ + EF RVIE G LS I M Sbjct: 271 FTRTLATLLNAGVSLITALDTTKNILSNAYIEKEFDRVIERVKGGEGLSYPIEDMG---- 326 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + G L L + + + E + + Sbjct: 327 --IFPRLMNIMLKTGEETGQLEYMLEKAADYYENEVENQVTRLTSLFEPVMIVLLALMVG 384 Query: 138 FCVSTLVYFTS 148 F +++++ Sbjct: 385 FLLASIIMPMF 395 >gi|283457757|ref|YP_003362345.1| Flp pilus assembly protein TadC [Rothia mucilaginosa DY-18] gi|283133760|dbj|BAI64525.1| Flp pilus assembly protein TadC [Rothia mucilaginosa DY-18] Length = 310 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 59/156 (37%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KR + + +FP +++ SV AG A+ I S + EF ++ Sbjct: 155 LGEAVTKREKQLVAEFPALAEMMALSVTAGESALAALERICLTSRGELAREFSEILAQTR 214 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+SL ++ + +S F I+V + G L++ L ++ +RD + Sbjct: 215 TGVSLLSALQEFAERTRVPALSRFVEGIAVAIERGTPLADVLRAQAQDVRDNAKRELMET 274 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 A E A ++ + F M + Sbjct: 275 AGKKEIAMLAPVVFFILPLTVIFAVFPGLSLMRLNF 310 >gi|17388923|gb|AAF36471.2|AF127982_1 GspF [Burkholderia cenocepacia] Length = 405 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 12/187 (6%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L R + + + AGLP+ +A+ V+ Q+ D +R + Sbjct: 55 QRLAFGRKLSQREQ-AILTRQLASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++ + R + + + G L L+ L+ + +K K+ Sbjct: 114 GGHSLANALGQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIMV 178 + V+ L+ + P +NV + + +L V A + Sbjct: 169 LAFTYPG---IVTLIAFGIVTFLLSYVVPQVVNVFASTKQQLPILTVVMMALSEFVRHWW 225 Query: 179 MRLMINF 185 ++I Sbjct: 226 WAILIAV 232 Score = 34.7 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ S+ I G +LS +++ + + P Sbjct: 274 FASTLGILTAAGVPILRALQAAGETLSNRAMRANIDDAIVRVREGSALSRALNNVKTFPP 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+++ L + + +E + G + Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAAEGEARELERRTMFLTSLLEPLLILAMGGIVL 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 VIVLAVMLPI 397 >gi|262401508|ref|ZP_06078075.1| type II secretory pathway component PulF [Vibrio sp. RC586] gi|262352223|gb|EEZ01352.1| type II secretory pathway component PulF [Vibrio sp. RC586] Length = 408 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 14/164 (8%), Positives = 42/164 (25%), Gaps = 4/164 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + +AG+P+ ++ + + E + + Sbjct: 67 EVLVIFCRQMFSLTKAGVPLLRSMRGLTQNCHNKQLKEALEAVCNELTNGR----SLSAS 122 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + S + + G L +AL L+ + +++ + Sbjct: 123 MQLHPGVFSPLFVSMIQVGENTGRLDQALLQLANYYEQEVETRKRIKTAMRYPIFVISFV 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 F ++ V + D + +A + + Sbjct: 183 VIAMFILNVKVIPQFTSMFSRFGADLPLPTRILIATSDFFVNYW 226 Score = 40.1 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 12/135 (8%), Positives = 37/135 (27%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + AG+P++ ++A+ + + + + +S Sbjct: 269 RAQLSRFSRTFSLMLSAGVPLNQSLALSAEAIDNKYLEQKIL-----EMKSQIESGVSIS 323 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 V + + + + + G + E L +S + K +E ++ Sbjct: 324 VTAINVNIFTPLVIQMITVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLVFV 383 Query: 133 IGSLPFCVSTLVYFT 147 + + Sbjct: 384 AAMVLVLALGIFLPM 398 >gi|120600491|ref|YP_965065.1| general secretion pathway protein F [Shewanella sp. W3-18-1] gi|146294649|ref|YP_001185073.1| general secretion pathway protein F [Shewanella putrefaciens CN-32] gi|120560584|gb|ABM26511.1| general secretion pathway protein F [Shewanella sp. W3-18-1] gi|145566339|gb|ABP77274.1| general secretion pathway protein F [Shewanella putrefaciens CN-32] gi|319424806|gb|ADV52880.1| general secretion pathway protein F [Shewanella putrefaciens 200] Length = 407 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 60/177 (33%), Gaps = 8/177 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 + I V AGLP+ +++ + Q D + S V G S ++S++ Sbjct: 67 AELALITRQIATLVAAGLPIEESLKAVGQQCEKDRLASMIMAVRSRVVEGYSFADSLAEF 126 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G+L L L+ R+ +K+K+Q + + Sbjct: 127 P-----HIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKLQQAMIYPIVLTVV 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML--IGIMVMRLMINFDV 187 + + V G + + ++A+ + G+ V+ ++ V Sbjct: 182 AIGVISVLLAAVVPKVVGQFEHMGAELPATTRFLISASDFVQNYGLFVVLAIVLLAV 238 >gi|260773648|ref|ZP_05882564.1| MSHA biogenesis protein MshG [Vibrio metschnikovii CIP 69.14] gi|260612787|gb|EEX37990.1| MSHA biogenesis protein MshG [Vibrio metschnikovii CIP 69.14] Length = 406 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 19/168 (11%), Positives = 49/168 (29%), Gaps = 6/168 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + + +AG+P+ ++ + S+ ++ V G SLS Sbjct: 66 EVLVIFCRQLYSLTKAGVPILRSMRGLTQNCSNKQLQRALEDVGRELTNGRSLS-----A 120 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 M + S + + G L +AL L+ + +++ Sbjct: 121 AMQMHSRVFSPLFVSMINVGENTGRLDQALLQLANYYEQEVETRKRIKTAMRYPTFVISF 180 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I F ++ V + + + + + + ++ Sbjct: 181 ITLAMFILNLKVIPQFTTMFSRFGVELPLPTRILIGMSNFFVNYWMVM 228 Score = 40.1 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 13/135 (9%), Positives = 39/135 (28%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 ++AG+P++ ++++ + E R + + S S++ Sbjct: 268 RAQLARFSRTFSLMLKAGVPLNQSLSLSAEALENKFL-ENRILKMKSEIEAGTSVSVTAA 326 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G + E L ++ + + K +E + Sbjct: 327 NANIFTP----LVLQMIAVGEETGRIDELLLEVADFYDREVDYELKTLTARIEPILLTLV 382 Query: 133 IGSLPFCVSTLVYFT 147 G + + Sbjct: 383 AGMVLVLALGIFLPM 397 >gi|28057911|gb|AAO29753.1| fimbrial assembly protein [Xylella fastidiosa Temecula1] Length = 420 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 52/166 (31%), Gaps = 6/166 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + ++AG+P+ A+ ++ Q + +R+ ++ G SL ESIS+ Sbjct: 80 KDIAFFSRQMATMMKAGVPIVGALDILANGQKNPRMRTMVNQIKNDIEGGSSLYESISKH 139 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L ++ + + +K K++ A + Sbjct: 140 P-----VYFDELYRNLVRAGERAGVLETVLDTVASYKENIEALKGKIRKALFYPVAIVAV 194 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + V + + V + + Sbjct: 195 ALIVSSILLIYVVPQFEDVFKGFGAELPAFTQMIVNFSNFMQRWWW 240 Score = 37.8 bits (86), Expect = 0.80, Method: Composition-based stats. Identities = 16/136 (11%), Positives = 44/136 (32%), Gaps = 5/136 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + RAG+P+ +A+ ++ G + + + + +S+ SI+ Sbjct: 283 NSALARFSRTTAVTFRAGVPLVEALGIVAGATGN---KVYSDAVFRMRDDVSVGYSINMS 339 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 +R + + ++ + G L L ++ + + +E +I Sbjct: 340 MRQVGI--FPHMVVQMASIGEEAGALDAMLFKVAEYYEQEVSNAVDGLSSLLEPLIMVFI 397 Query: 133 IGSLPFCVSTLVYFTS 148 + V + Sbjct: 398 GVIVGGMVIAMYLPIF 413 >gi|183985115|ref|YP_001853406.1| hypothetical protein MMAR_5146 [Mycobacterium marinum M] gi|183178441|gb|ACC43551.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length = 267 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 60/172 (34%), Gaps = 1/172 (0%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 AL+I+V +R G A V ++ PV + R V LG ++ + Sbjct: 92 RALEAALEILVGELRVGAHPVRAFGVAADETDGPVAAAMRGVAAHARLGADVTGGLRAAA 151 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR-ILRDRKNMKAKVQALSMEAKASAWI 132 R L V + G L ++ + R+ AKV A A+ASA I Sbjct: 152 RRSALPSHWERLAVYWQLASDHGLAIATLMRAAQRDVAQRQRFSAKVSAGLAGARASAGI 211 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + LP L + L+ G LL V A G+ + + Sbjct: 212 LAGLPVLGVVLGQLIGAQPLAFLLGGHLGGWLLVVGLALAAGGLWWSDRITD 263 >gi|37522234|ref|NP_925611.1| pilin biogenesis protein [Gloeobacter violaceus PCC 7421] gi|35213234|dbj|BAC90606.1| pilin biogenesis protein [Gloeobacter violaceus PCC 7421] Length = 410 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 52/143 (36%), Gaps = 6/143 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+ + ++ V+ QS++ ++ +V G SL+ S+ + + Sbjct: 74 FARQLAAMTSAGVSLVRSLTVLEEQSTNRKLKKVLTQVSFDVQQGSSLAASMRKFPQA-- 131 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + GG L + L LS++L D+ ++ +V++ + + Sbjct: 132 ---FDNLFVAMIQAGEAGGLLDQVLDRLSKLLEDQDRLQRQVRSALAYPVTVLILAVIIF 188 Query: 138 FCVSTLVYFTSPGYMNVLINDPR 160 + T + L + Sbjct: 189 LAMVTFILPVFKDIFKQLGGELP 211 Score = 41.6 bits (96), Expect = 0.050, Method: Composition-based stats. Identities = 15/133 (11%), Positives = 38/133 (28%), Gaps = 5/133 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 VR+G+P+ A+ ++ + + V ++ SL + + P Sbjct: 279 FCRTFGSLVRSGVPILSALEIVRDTAGNAVIADAVDEARRVIREGSLISPTLKKEKAFPP 338 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G L L ++ K +E + G + Sbjct: 339 -----MAVQMISVGEESGELDSMLMKVADFYESEVEQAVKALTSLLEPIMIVVLGGLVGS 393 Query: 139 CVSTLVYFTSPGY 151 + + + Sbjct: 394 VILAMYLPLFTVF 406 >gi|167584996|ref|ZP_02377384.1| general secretion pathway protein F [Burkholderia ubonensis Bu] Length = 405 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 23/188 (12%), Positives = 59/188 (31%), Gaps = 12/188 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + + +R + + AGLP+ +++ V+ Q+ D +R + Sbjct: 59 LGRKLSQREQAI------LTRQLASLLIAGLPLDESLGVLTEQAERDYIRELMAAIRAEV 112 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SL+ ++++ R + + + G L L+ L+ + +K K+ Sbjct: 113 LGGHSLANALAQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEQSNALKQKI 167 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 I + + + V ++ +A + + Sbjct: 168 LLAFTYPGIVTLIAFGIVTFLLSYVVPQVVNVFASTKQQLPILTVVMMALSDFVRHWWWA 227 Query: 180 RLMINFDV 187 ++ V Sbjct: 228 IVIAAVLV 235 Score = 34.7 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ S+ I G +LS +++ + + P Sbjct: 274 FASTLGILTAAGVPILRALQAAGETLSNRAMRANIDDAIVRVREGSALSRALNNVKTFPP 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+++ L + + +E + G + Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAAEGEARELERRTMFLTSLLEPLLILAMGGIVL 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 VIVLAVMLPI 397 >gi|170723339|ref|YP_001751027.1| general secretion pathway protein F [Pseudomonas putida W619] gi|169761342|gb|ACA74658.1| general secretion pathway protein F [Pseudomonas putida W619] Length = 400 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 53/171 (30%), Gaps = 7/171 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + AG+P+ DA+A + Q P V L L Sbjct: 53 RRQRLSRAQLCELTRQLATLTGAGIPLVDALATLERQLRQPALH-GVLVALRGSLAEGLG 111 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + S + P + + G L++ L L+ L + + K + + Sbjct: 112 LARSLARQGAPFTG---LYCALVEAGERSGRLAQVLTRLADHLEQVQRQQHKARTALIYP 168 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++G V L+ F P + + L+ + G++ Sbjct: 169 ---CVLMGVSLAVVIGLMTFVVPKLTEQFAHAGQSLPLITSLLIGLSQGLV 216 Score = 38.9 bits (89), Expect = 0.35, Method: Composition-based stats. Identities = 14/128 (10%), Positives = 37/128 (28%), Gaps = 7/128 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + +G+ + +A+ V + +V + G SL ++ Q Sbjct: 270 RSLAILTSSGVALLEALQVATETVGNRRIRLAMEQVRQQVQGGTSLHRALD------GCQ 323 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + + G L++ L ++ + E + + F Sbjct: 324 QFPPLLVNMVGSGEASGTLADMLERVADDQERGFARQVDTAMALFEPLMILVMGAVVLFI 383 Query: 140 VSTLVYFT 147 V ++ Sbjct: 384 VLAVLLPI 391 >gi|239827897|ref|YP_002950521.1| type II secretion system protein [Geobacillus sp. WCH70] gi|239808190|gb|ACS25255.1| type II secretion system protein [Geobacillus sp. WCH70] Length = 403 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 62/175 (35%), Gaps = 6/175 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 DF L ++AG+ + D+ ++ Q+ +++ V E+ G LS + ++ Sbjct: 63 QDFVIYLRQFATLIKAGVSIVDSTRILASQTESKALKNALMEVEESLRAGNPLSAAAAKH 122 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R P + + GGN+ E L L+ K K+ + A A I Sbjct: 123 PRIFP-----AMFVNMVKAGEAGGNMDETLERLADHFEKIHRTKQKIVSALAYPIAVAII 177 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 ++ + V T + + A+ ++ + +++ + Sbjct: 178 AVAVVIFLLVTVVPTFVAMFADFHAELPTITKFVLRASEVMQTYWWLVVIVFIAI 232 >gi|154505643|ref|ZP_02042381.1| hypothetical protein RUMGNA_03182 [Ruminococcus gnavus ATCC 29149] gi|153794082|gb|EDN76502.1| hypothetical protein RUMGNA_03182 [Ruminococcus gnavus ATCC 29149] Length = 407 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 45/152 (29%), Gaps = 6/152 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-----GQSSDPVRSEFRRVIE 57 K R + D+P + + AG+P A I +++ V E + Sbjct: 251 QKKKARRHQLAMDYPEFISTFTLYLGAGMPARRAWFQIASVYRQQENTRYVYEEMVYTMR 310 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMK 116 G SE L F+ ++S + L+E L + + + Sbjct: 311 EMQRGTPESECYEHFGMRCGLPVYRKFAVMLSQNLRKGTKGLAELLQREAAGAFEERKAA 370 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 A+ + + L + +V Sbjct: 371 ARKLGEETSTRLLGPMFLMLGVVLMIIVVPAF 402 >gi|148976511|ref|ZP_01813207.1| type II secretory pathway, component EpsF [Vibrionales bacterium SWAT-3] gi|145964087|gb|EDK29344.1| type II secretory pathway, component EpsF [Vibrionales bacterium SWAT-3] Length = 407 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 22/178 (12%), Positives = 52/178 (29%), Gaps = 15/178 (8%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D I V++G+P+ + + + QS P + ++ Sbjct: 68 DLALITRQISTLVQSGMPLEECLKAVAEQSEKPRIRTMLLAVRSKVT----EGYSLADSL 123 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + G+L L L+ +R+ M++K+ + Sbjct: 124 ADYPHIFDELFRAMVAAGEKSGHLDAVLERLADYAENRQKMRSKLLQAMIYPVVLVVFAV 183 Query: 135 SLPFCVSTLVYFTS-----------PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ + V P L+ G+ ++IG++V+ Sbjct: 184 TIVSFLLATVVPKIVEPIIQMGQELPQSTQFLLASSEFIQDWGIQLLLLIIGVIVLIK 241 >gi|256752526|ref|ZP_05493382.1| type II secretion system protein [Thermoanaerobacter ethanolicus CCSD1] gi|256748592|gb|EEU61640.1| type II secretion system protein [Thermoanaerobacter ethanolicus CCSD1] Length = 403 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 21/170 (12%), Positives = 57/170 (33%), Gaps = 6/170 (3%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSE 67 + D + AG+P+ ++A + Q + +++ R V E G +LS+ Sbjct: 58 KKVKVKDIAVFCRQFATLINAGIPIVTSLATMREQVENKRLKNALREVYEEVQKGRTLSD 117 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ R P+ + ++ G L + + ++ + K+++ Sbjct: 118 AMKRHSDVFPM-----LLYNMVEVGEVSGTLDKVMNEMAEHYEKENELNQKIKSALTYPV 172 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + + + T V G + + +A + + Sbjct: 173 IVSIVAILVVIFLLTNVLPIFVGMFENAEVELPLPTRILIAISSFISQYW 222 Score = 35.9 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 46/131 (35%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P+ A+ V+ + + +E ++ E GL LSE + R+ + P Sbjct: 271 FTRTLGTLISAGVPLMKAMEVVEKVIGNTIVAEGLKKAQEDIKKGLPLSEPLKRIGIFPP 330 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G+L L + + +E + + Sbjct: 331 M------VIQMIGIGESSGSLDSILNKTADFYDGEVDTAVSQMTTLLEPLIIVMLATVVG 384 Query: 138 FCVSTLVYFTS 148 F V +++ Sbjct: 385 FIVISIIMPLF 395 >gi|161524901|ref|YP_001579913.1| type II secretion system protein [Burkholderia multivorans ATCC 17616] gi|189350349|ref|YP_001945977.1| pilus assembly protein [Burkholderia multivorans ATCC 17616] gi|160342330|gb|ABX15416.1| type II secretion system protein [Burkholderia multivorans ATCC 17616] gi|189334371|dbj|BAG43441.1| pilus assembly protein [Burkholderia multivorans ATCC 17616] Length = 330 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 60/158 (37%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57 ++ R D+ P +D++ GL + ++ V+ + SE Sbjct: 168 VQRRAAARRQCVDDELPLFVDMLRLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEVGVAQR 227 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+ R+ +++ ++ + GG + E L LR+ + Sbjct: 228 QFVAGRTREQSMQRLSGGFDNEDLRAIVRLMVQVDKHGGAVQEPLKQFGDRLRETRRAML 287 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + K + ++ +L + L+ PG++ V+ Sbjct: 288 RERIGRLTVKMTGVMVLTLLPAL--LIVTAGPGFLAVM 323 >gi|283787697|ref|YP_003367562.1| tight adherence protein C [Citrobacter rodentium ICC168] gi|282951151|emb|CBG90842.1| putative tight adherence protein C [Citrobacter rodentium ICC168] Length = 283 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 65/145 (44%), Gaps = 2/145 (1%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--TQ 59 K +I R + +D P +DI+ V++G+ + + + + + + + Sbjct: 124 KMIIDSRVRRICNDLPYIIDIMAICVQSGMTIENTIRYLAENTETINPDISVLLARTIMK 183 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 +SE++ + +P QE+ ++ + + G ++ L +LSR +R+ + + Sbjct: 184 MEVSGMSEALDLLYNEVPSQEIRMLASTLQQSIKFGSSIYLLLLDLSREIREMQLLAIDE 243 Query: 120 QALSMEAKASAWIIGSLPFCVSTLV 144 + S+ AK S +I + F + LV Sbjct: 244 KISSLAAKMSLPMIICIMFPILVLV 268 >gi|261211293|ref|ZP_05925582.1| general secretion pathway protein F [Vibrio sp. RC341] gi|260839794|gb|EEX66405.1| general secretion pathway protein F [Vibrio sp. RC341] Length = 406 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 64/183 (34%), Gaps = 20/183 (10%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + V++G+P+ + + + QS +R+ V G +LS+S+ Sbjct: 67 DLALITRQLSTLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G+L L L+ +R+ M++K+Q + ++ Sbjct: 127 -----HVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPV---VLV 178 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-----------AFMLIGIMVMRLM 182 V+ L+ P + + + ++LIG M++ + Sbjct: 179 VFAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGIWLLIGFMLLIYL 238 Query: 183 INF 185 + + Sbjct: 239 VRW 241 >gi|300694107|ref|YP_003750080.1| type II secretion system protein [Ralstonia solanacearum PSI07] gi|299076144|emb|CBJ35457.1| Type II secretion system protein [Ralstonia solanacearum PSI07] Length = 324 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 63/146 (43%), Gaps = 5/146 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLSES 68 D+ P +D++ GL + ++ VI + + EF R + G ++ Sbjct: 168 VDDELPAMVDMLRLLQGVGLSIDQSLQVIANEFHGMLPVLAGEFGRANQQFASGRPREQT 227 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + R+ R +++ T+++ + GG + E L L++ + + K + + K Sbjct: 228 LLRIARLFDNEDLKGLITLLTQVDRFGGAVQEPLRQFGVRLQENRRSRLKERVGKLTVKM 287 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNV 154 + ++ +L + L+ PG+M+V Sbjct: 288 TVVMVLTLLPAL--LIITAGPGFMSV 311 >gi|55378047|ref|YP_135897.1| hypothetical protein rrnAC1249 [Haloarcula marismortui ATCC 43049] gi|55230772|gb|AAV46191.1| unknown [Haloarcula marismortui ATCC 43049] Length = 678 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 17/152 (11%), Positives = 56/152 (36%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ + L + + G+ + ++V V+ SS + EF + + G SL Sbjct: 454 QRSRKAIIGKLSENLRKLASANDTGMTLLESVKVVSETSSGKLSDEFETIHAKVNYGTSL 513 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + ++ +I+ + + + L+ ++ ++ +++ + ++ + Sbjct: 514 KDALREFNNKYNVPRLARTVKLIAEAQEASSQIQDVLSTAAQASENQDDIERERKSRTRM 573 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + V L+ M+ L Sbjct: 574 QTVIILMTYLTLLGVMALLKTQFLDVMSGLAT 605 Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 19/179 (10%), Positives = 54/179 (30%), Gaps = 7/179 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQH 60 R + +++ + GL + + + + V EF+ ++ Sbjct: 141 FRSSAREREINVLLSDSISFMYALSVGGLNQLEILQSMGKAEDTYGEVAKEFQSIVLETE 200 Query: 61 LG-LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 ++ P E+S F T + GG+++ L + + + Sbjct: 201 YFDTDYRTAVRNQALQTPSDELSQFLTDMLSIINSGGDMTSFLEDQKEKHMRTARQEQEK 260 Query: 120 QALSMEAKASAWII----GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 ++E ++ L + ++ +++ G + L +L+ Sbjct: 261 MLETLELFGEMYMTLSLFPLLLIIILVIMSMMGNAQQSLIYGTVYGLIPLTGLGFLVLV 319 >gi|134298819|ref|YP_001112315.1| hypothetical protein Dred_0955 [Desulfotomaculum reducens MI-1] gi|134051519|gb|ABO49490.1| hypothetical protein Dred_0955 [Desulfotomaculum reducens MI-1] Length = 330 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 24/180 (13%), Positives = 70/180 (38%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 ++ K++ FP + + ++ A++ + ++ +P +S F+ ++ G Sbjct: 150 RKQEKYISQFPIVVRTFLVALEQKGNARSAISYVAERAPEPSKSLFQTILLKIDSGFEPK 209 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + + + + F +++ G L L+ + + + + Sbjct: 210 LALKEITKEIKVSHAHLFEQLLADAYYQGTTLIPQFTRLAGQVDAMNELILENAQTTHAG 269 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + +I+ L ++ ++ P L + G ++ + +LIGI+ R+M D Sbjct: 270 RIQNFIMHFLVVILAVMLVRVLPESEKYLTQEIGGRTIVLLTFLSVLIGIIFDRMMSKVD 329 >gi|307131915|ref|YP_003883931.1| general secretion pathway protein F [Dickeya dadantii 3937] gi|306529444|gb|ADM99374.1| General secretion pathway protein F [Dickeya dadantii 3937] Length = 408 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 10/160 (6%) Query: 7 KRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLS 64 +R+ + D + V A LP+ +A+ + QS + + V G S Sbjct: 60 RRSHRISASDLALLTRQLATLVAAALPLEEALDAVAKQSEKPKLSALMAAVRAKVVEGHS 119 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L+E++ + + G+L L L+ R+ M++++Q + Sbjct: 120 LAEAMGNFP-----GSFERLYCAMVAAGEASGHLDAVLNRLADYTEQRQQMRSRIQQAMI 174 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 + VS L+ P + I+ + L Sbjct: 175 YP---CVLTLVAISVVSILLSAVVPKVVEQFIHMKQALPL 211 >gi|134294191|ref|YP_001117926.1| general secretion pathway protein F [Burkholderia vietnamiensis G4] gi|134137348|gb|ABO53091.1| general secretion pathway protein F [Burkholderia vietnamiensis G4] Length = 405 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 12/187 (6%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L R + + + AGLP+ +A+ V+ Q+ D +R + Sbjct: 55 QRLAFGRKLSQREQ-AILTRQLASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++ + R + + + G L L+ L+ + +K K+ Sbjct: 114 GGHSLANALGQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIMV 178 + V+ L+ + P +NV + + LL + A + Sbjct: 169 LAFTYPG---IVTLIAFGIVTFLLSYVVPQVVNVFASTKQQLPLLTIVMMALSEFVRHWW 225 Query: 179 MRLMINF 185 ++I Sbjct: 226 WAILIAV 232 Score = 34.7 bits (78), Expect = 6.4, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ S+ I G +LS +++ + + P Sbjct: 274 FASTLGILTAAGVPILRALQAAGETLSNRAMRANIDDAIVRVREGSALSRALNNVKTFPP 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+++ L + + +E + G + Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAAEGEARELERRTMFLTSLLEPLLILAMGGIVL 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 VIVLAVMLPI 397 >gi|332531030|ref|ZP_08406949.1| general secretion pathway protein F [Hylemonella gracilis ATCC 19624] gi|332039511|gb|EGI75918.1| general secretion pathway protein F [Hylemonella gracilis ATCC 19624] Length = 412 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 53/173 (30%), Gaps = 2/173 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65 +R + V AGLP+ A+A + S D E +R+I ++ Sbjct: 62 QRRVFNASQLAVWTRQLAGLVAAGLPLERALASLAQDLSQDSGSPEQQRLIAQLRDEVN- 120 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S + + + GG L + L L+ L ++ ++AK+ ++ Sbjct: 121 GGSTFARALAQHPRTFDDSYVAVVSAGEQGGQLGQVLDRLADELDGQEVLRAKLMGAALY 180 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + + T V + + + + L Sbjct: 181 PLIVSGFSCVIVAFLLTYVVPQVANAFSSGNRALPALTVFMLGLSAFLRAWGW 233 >gi|26987784|ref|NP_743209.1| general secretion pathway protein F [Pseudomonas putida KT2440] gi|24982479|gb|AAN66673.1|AE016295_6 type II secretion pathway protein XcpS [Pseudomonas putida KT2440] Length = 400 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 54/171 (31%), Gaps = 7/171 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + AG+P+ DA+A + Q P V L L Sbjct: 53 RRQRLSRAQLCELTRQLATLTGAGIPLVDALATLERQLRQPALH-SVLVALRGSLAEGLG 111 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + S + P + + G+L++ L L+ L + + K + + Sbjct: 112 LARSLARQGAPFTG---LYCALVEAGERSGHLAQVLTRLADHLEQVQRQQHKARTALIYP 168 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++G V L+ F P + + L+ + G++ Sbjct: 169 A---VLMGVSLAVVIGLMTFVVPKLTEQFAHAGQSLPLITSLLIGLSQGLV 216 Score = 38.2 bits (87), Expect = 0.56, Method: Composition-based stats. Identities = 11/127 (8%), Positives = 32/127 (25%), Gaps = 5/127 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + +G+ + +A+ V + + G + + P Sbjct: 270 RSLAILCGSGVALLEALQVATETIGNRRIRLAMEQVRQHVQGGTSLHRALDASQQFPP-- 327 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + G L++ L ++ + E + + F V Sbjct: 328 ---LLVNMVGSGEASGTLADMLERVADDQERGFARQVDTAMALFEPLMILVMGAVVLFIV 384 Query: 141 STLVYFT 147 ++ Sbjct: 385 LAVLLPI 391 >gi|282899279|ref|ZP_06307250.1| type II secretion system protein [Cylindrospermopsis raciborskii CS-505] gi|281195848|gb|EFA70774.1| type II secretion system protein [Cylindrospermopsis raciborskii CS-505] Length = 419 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 19/168 (11%), Positives = 59/168 (35%), Gaps = 8/168 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 V +G+ + ++ +I Q ++ ++ G++LS+S+ + Sbjct: 84 FSRQFATLVNSGVTIIKSLDIISLQCPNPKLKKALNQISTDIKTGINLSDSMKKHPDC-- 141 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + GG L + L L+++L D ++ ++++ ++ Sbjct: 142 ---FDALYISMVQAGEAGGVLDDVLHRLAKLLEDLAKLQNQIKSALSYPIFVGCFAIAIA 198 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGH--MLLGVAAAFMLIGIMVMRLMI 183 ++ + + + +L+ + G +V+ +I Sbjct: 199 LAMTIFIIPIFANVFKNMGVELPIITEILISFSQTLNSWGFLVIITLI 246 >gi|114564936|ref|YP_752450.1| type II secretion system protein [Shewanella frigidimarina NCIMB 400] gi|114336229|gb|ABI73611.1| type II secretion system protein [Shewanella frigidimarina NCIMB 400] Length = 419 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 20/180 (11%), Positives = 53/180 (29%), Gaps = 18/180 (10%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMV 73 D I + AG+P+ + ++ E ++ G+ LS+++ Sbjct: 81 DIAMITRQIATMLAAGVPLVTTIELLGRGHEKAKVRELLGTILSDVQSGIPLSDALR--- 137 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G+L ++ + +K+K++ A + Sbjct: 138 --PHRRYFDDLYVDLVAAGEHSGSLDAVFDRIATYREKAEQLKSKIKKAMFYPAAVVVVA 195 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA------------AFMLIGIMVMRL 181 ++ + V N + + + ++IGI + R Sbjct: 196 IAVTSLLLLFVVPQFEDIFNGFGAELPAFTQMIIGISRWLQSSWYFFVIAIVIGIWLFRR 255 >gi|107021572|ref|YP_619899.1| general secretion pathway protein F [Burkholderia cenocepacia AU 1054] gi|116688084|ref|YP_833707.1| general secretion pathway protein F [Burkholderia cenocepacia HI2424] gi|170731434|ref|YP_001763381.1| general secretion pathway protein F [Burkholderia cenocepacia MC0-3] gi|254246657|ref|ZP_04939978.1| General secretion pathway protein F [Burkholderia cenocepacia PC184] gi|11559477|dbj|BAB18790.1| GspF [Burkholderia cepacia] gi|105891761|gb|ABF74926.1| General secretion pathway protein F [Burkholderia cenocepacia AU 1054] gi|116646173|gb|ABK06814.1| general secretion pathway protein F [Burkholderia cenocepacia HI2424] gi|124871433|gb|EAY63149.1| General secretion pathway protein F [Burkholderia cenocepacia PC184] gi|169814676|gb|ACA89259.1| general secretion pathway protein F [Burkholderia cenocepacia MC0-3] Length = 405 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 61/180 (33%), Gaps = 11/180 (6%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSE 67 + + + AGLP+ +A+ V+ Q+ D +R + G SL+ Sbjct: 61 RKLSQREQAILTRQLASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVLGGHSLAN 120 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + R + + + G L L+ L+ + +K K+ Sbjct: 121 ALGQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEQSNALKQKILLAFTYPG 175 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIMVMRLMINF 185 + V+ L+ + P +NV + + +L V A + ++I Sbjct: 176 ---IVTLIAFGIVTFLLSYVVPQVVNVFASTKQQLPILTVVMMALSEFVRHWWWAILIAV 232 Score = 34.3 bits (77), Expect = 7.1, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ S+ I G +LS +++ + + P Sbjct: 274 FASTLGILTAAGVPILRALQAAGETLSNRAMRANIDDAIVRVREGSALSRALNNVKTFPP 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+++ L + + +E + G + Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAAEGEARELERRTMFLTSLLEPLLILAMGGIVL 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 VIVLAVMLPI 397 >gi|284164351|ref|YP_003402630.1| type II secretion system F domain protein [Haloterrigena turkmenica DSM 5511] gi|284014006|gb|ADB59957.1| Type II secretion system F domain protein [Haloterrigena turkmenica DSM 5511] Length = 536 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 56/139 (40%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R P+ LD + AG+ + AV + G P+ +E RV G L Sbjct: 311 RRRIDAVEAAVPDLLDRLASVNEAGMSLVSAVDYVRGSELGPLGAELDRVWADVQWGADL 370 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + +R+ R + + + T+++ GNL+ L +R + ++ + + +E Sbjct: 371 QTAFARLERRVRTRTTARVVTLLTEAMNASGNLATVLRIAARQAAADRRLERERKQAMVE 430 Query: 126 AKASAWIIGSLPFCVSTLV 144 ++ + + ++ Sbjct: 431 YTIVVYVSYLVFLFIIAVL 449 >gi|170724682|ref|YP_001758708.1| type II secretion system protein [Shewanella woodyi ATCC 51908] gi|169810029|gb|ACA84613.1| type II secretion system protein [Shewanella woodyi ATCC 51908] Length = 420 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 18/172 (10%), Positives = 52/172 (30%), Gaps = 8/172 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMV 73 D I ++AG+P+ + ++ E ++ G+ LS+++ Sbjct: 81 DIAMVTRQIATMLQAGVPLVTTIEMLGRGHEKVKMRELLGTILTEIQSGIPLSDALR--- 137 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 Q + + G+L ++ + +K+K++ A + Sbjct: 138 --PHRQYFDDLYVDLVAAGEHSGSLDAVFERIALYKEKAEALKSKIKKAMFYPAAVVIVA 195 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183 + + V + +++ ++ A + +I Sbjct: 196 IGVTTLLLLFVVPQFQEIFAGFGAELPAFTQLVIHISEALQASWYIFAVAII 247 >gi|206561861|ref|YP_002232626.1| type II secretion system protein F [Burkholderia cenocepacia J2315] gi|198037903|emb|CAR53848.1| type II secretion system protein F [Burkholderia cenocepacia J2315] Length = 405 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 64/185 (34%), Gaps = 12/185 (6%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L R + + + AGLP+ +A+ V+ Q+ D +R + Sbjct: 55 QRLAFGRKLSQREQ-AILTRQLASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++ + R + + + G L L+ L+ + +K K+ Sbjct: 114 GGHSLANALGQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIMV 178 + V+ L+ + P +NV + + +L V A + Sbjct: 169 LAFTYPG---IVTLIAFGIVTFLLSYVVPQVVNVFASTKQQLPILTVVMMALSEFVRHWW 225 Query: 179 MRLMI 183 ++I Sbjct: 226 WAILI 230 Score = 34.7 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ S+ I G +LS +++ + + P Sbjct: 274 FASTLGILTAAGVPILRALQAAGETLSNRAMRANIDDAIVRVREGSALSRALNNVKTFPP 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+++ L + + +E + G + Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAAEGEARELERRTMFLTSLLEPLLILAMGGIVL 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 VIVLAVMLPI 397 >gi|323491673|ref|ZP_08096851.1| MSHA biogenesis protein MshG [Vibrio brasiliensis LMG 20546] gi|323314035|gb|EGA67121.1| MSHA biogenesis protein MshG [Vibrio brasiliensis LMG 20546] Length = 406 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 19/174 (10%), Positives = 49/174 (28%), Gaps = 6/174 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + +AG+P+ ++ + SS+ E + + Sbjct: 66 EVLVIFCRQLYSLTKAGVPLLRSMKGLSQNSSNKQLQEALEAVTQELTNGR----SLSSS 121 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 M + S + + G L +AL L+ + +++ I Sbjct: 122 MQMYPKVFSSLFVSMVHVGENTGRLDQALLQLANYYEQEVETRKRIKTAMRYPTFVISFI 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 F ++ V D + ++ + + ++ M+ V Sbjct: 182 VVAMFVLNVKVIPQFTSMFARFGVDLPLPTRILISTSEFFVNYWLL--MVAIMV 233 Score = 39.3 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 10/135 (7%), Positives = 35/135 (25%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 ++AG+P++ ++A+ + + ++ + Sbjct: 268 RAQLSRFSRTFALMLKAGVPLNQSLALSAEALGNRYLE-----NRLLEMKAAIEAGSTIS 322 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G + E L ++ + K +E + Sbjct: 323 STAINSGVFTPLVIQMISVGEETGRIDELLLEVADFYDREVDYDLKTLTARIEPILLVIV 382 Query: 133 IGSLPFCVSTLVYFT 147 G + + Sbjct: 383 AGMVLVLALGIFLPM 397 >gi|333011492|gb|EGK30906.1| bacterial type II secretion system protein F domain protein [Shigella flexneri K-272] gi|333021737|gb|EGK40986.1| bacterial type II secretion system protein F domain protein [Shigella flexneri K-227] Length = 400 Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 22/186 (11%), Positives = 55/186 (29%), Gaps = 22/186 (11%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEA 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKSQRQLTDKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + G +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGFLLAIANKLLM 235 Query: 180 RLMINF 185 R Sbjct: 236 RRPTRL 241 >gi|94500431|ref|ZP_01306963.1| Type II secretory pathway, component PulF [Oceanobacter sp. RED65] gi|94427466|gb|EAT12444.1| Type II secretory pathway, component PulF [Oceanobacter sp. RED65] Length = 405 Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 54/166 (32%), Gaps = 6/166 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 +D + R+G+P+ AV + + + + + R V G +LS+S+ Sbjct: 66 EDMVIFCRQMHALSRSGIPIMRAVLGLAETTRNTTLENILRHVGNDLSRGNTLSQSLRA- 124 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + GNL EA L L ++ K KV+A Sbjct: 125 ----HEHHFTPLFISMIQVGESTGNLDEAFKQLVDHLEMERDTKKKVKAALRYPSMLISA 180 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 I V+ V + N +D + + + I Sbjct: 181 IFIAIIVVNMFVIPSFANVFNRFGSDLPLATSILLNTSNFFIHYWW 226 Score = 37.8 bits (86), Expect = 0.71, Method: Composition-based stats. Identities = 13/134 (9%), Positives = 41/134 (30%), Gaps = 7/134 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 +AG+P+ ++ + + + + + G +LS + Sbjct: 270 ALSRFTRTFAMLFKAGVPILQSLDLSAESVGNRYIAQHILDMRQGIERGDTLSRTAYASG 329 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + P + + G + L ++S+ + + + K + S+E ++ Sbjct: 330 MFTP------LILQMISVGEESGAVDTLLMDVSQFYDEETDYRVKNISASLEPILLIFMG 383 Query: 134 GSLPFCVSTLVYFT 147 + + Sbjct: 384 AMILILALGVFLPM 397 >gi|218550225|ref|YP_002384016.1| General secretion pathway protein F [Escherichia fergusonii ATCC 35469] gi|218357766|emb|CAQ90410.1| General secretion pathway protein F [Escherichia fergusonii ATCC 35469] Length = 407 Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 8/181 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59 ++ D + V+A +P+ + + QS V+S + Sbjct: 54 LQRRQHAHRRVAAADLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRI 113 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G +LS+S+ R + + G+L L L+ R+ +K+++ Sbjct: 114 QEGYTLSDSLREHPR-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRL 168 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIM 177 + + + + T V + L + L+ ++ A G+ Sbjct: 169 LQAMLYPLVLLVVATGVVTILLTAVVPKIIEQFDHLGHALPASTRALIAMSDALQTSGVY 228 Query: 178 V 178 Sbjct: 229 W 229 >gi|291279694|ref|YP_003496529.1| general secretion pathway protein F [Deferribacter desulfuricans SSM1] gi|290754396|dbj|BAI80773.1| general secretion pathway protein F [Deferribacter desulfuricans SSM1] Length = 402 Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 21/159 (13%), Positives = 58/159 (36%), Gaps = 6/159 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74 P+ + +++G+P+S+++ + Q ++ V+S + G+ LS ++ Sbjct: 68 LPDVFFQLAMLLKSGIPLSESLKITGNQVNNKKVKSILLALSAKVSEGIKLSVAMQEF-- 125 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 S + S+ G L+E N++R +++ K++ + I Sbjct: 126 ---NDYFSDVLINLVRTSEETGRLAETFENVARYEEEKRKSMDKIKVAMIYPMIVLSIGM 182 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + + + V + + + +A + Sbjct: 183 GVVGFLLSYVVPKMKNIFSAVNRELPATTKFLIATGNFI 221 >gi|123443825|ref|YP_001007796.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090786|emb|CAL13668.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 274 Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 65/157 (41%), Gaps = 4/157 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 +K+++ +RT L P +DI V++G+ + ++++ + +++ Sbjct: 117 VKNIVARRTQSLLRSLPFFIDITAACVQSGMTIDNSLSYSAKKFELINADLSLIMLKVTK 176 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + L +I + E+ F + + G + E L LS+ +R+ + + + Sbjct: 177 RAEINGLENAIKEFNQSSTELEIRMFCSALQYSISFGATVYEQLIKLSKDMREMQLLVTE 236 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + AK + + + LV SPG + ++ Sbjct: 237 EKISKLTAKLTIPLFLFILIPFVVLV--VSPGILELI 271 >gi|307328262|ref|ZP_07607440.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] gi|306886096|gb|EFN17104.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] Length = 308 Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 64/167 (38%), Gaps = 3/167 (1%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + ++ +RAG +A+ + +R + V G + +++ R+ R Sbjct: 132 DLCAVVAGELRAGRHPGEALLAV---DPGHLRERWGLVTAAARFGGEVPDALRRVARLPG 188 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++ + V G L+ L ++ LR ++ + + A AKA+A + LP Sbjct: 189 AEGLTGVAACWQVAVDEGAGLAAGLDRVAAALRAERDQRDSLDAKLAGAKATAAALAVLP 248 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L ++ L++ P G L V G++ M+ Sbjct: 249 VVGLVLGGLLGSNPLHELLHTPAGLSCLLVGGLLEWTGLVWTGRMVR 295 >gi|239994225|ref|ZP_04714749.1| type IV pilus biogenesis protein PilC [Alteromonas macleodii ATCC 27126] Length = 374 Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 15/154 (9%), Positives = 46/154 (29%), Gaps = 6/154 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 I + AG+ + ++ +I ++ +R + + G LS ++ + Sbjct: 42 RQIATMLAAGVTLIQSLEMISQGHANSSMRKLLGEITDEVKAGNPLSSALRKHPL----- 96 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + G L ++ + +K+K++ A + + Sbjct: 97 YFDDLYCDLVYTGEQSGALETIYDRIATYKEKAEALKSKIKKAMFYPIAVLVVAFIVTTI 156 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + V + + +A + + Sbjct: 157 LLIFVVPQFEEIFSSFGAELPAFTQFVLAISRFV 190 Score = 38.2 bits (87), Expect = 0.55, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 38/130 (29%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + AG+P+ A+ G S + V E + + G R Sbjct: 244 FTRTLATTFAAGVPLIGALESAAGASGNAVYREAILYMRKEVAGGMPMHVAMRA-----T 298 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 Q T + + G + E L+ ++ I + +E A + + Sbjct: 299 QVFPDMVTQMIAIGEESGAVDEMLSKIATIYEAEVDDMVDGLTSLLEPMIMAVLGVVIGG 358 Query: 139 CVSTLVYFTS 148 + + Sbjct: 359 LIVAMYLPIF 368 >gi|28572729|ref|NP_789509.1| hypothetical protein TW581 [Tropheryma whipplei TW08/27] gi|28410862|emb|CAD67247.1| putative membrane protein [Tropheryma whipplei TW08/27] Length = 298 Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 59/146 (40%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +KKR K L++ P+A + + SV AG V DA+ I S E ++V+ Sbjct: 146 LRRYVKKRKQKILNEMPSAFEFLSLSVSAGEGVLDAIKRICFISKGEFSIELKKVLIGVS 205 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +L + RM + + + + I + G L++ L ++ R+ + Q Sbjct: 206 SGDTLERCLKRMAAKLDIVSIDRAVSQIITAIERGTPLADILIKQAKEARNATRVALIEQ 265 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146 A E ++ + F Sbjct: 266 AGKKEIAMMFPLVFFILPVTILFAIF 291 >gi|163749926|ref|ZP_02157171.1| general secretion pathway protein F [Shewanella benthica KT99] gi|161330440|gb|EDQ01419.1| general secretion pathway protein F [Shewanella benthica KT99] Length = 407 Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 57/183 (31%), Gaps = 18/183 (9%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 + I V AGLPV + + + Q D + S V G SL++S++ Sbjct: 67 AELALITRQIATLVAAGLPVEEVLQAVGQQCEKDRLASMIMAVRSRVVEGYSLADSMAEF 126 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G+L L L+ R+ +K+K+ + + Sbjct: 127 P-----HIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKMTQAMIYPLVLTVV 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA------------AAFMLIGIMVMR 180 + + V G + L +A M+ G ++ + Sbjct: 182 AIGVIAILLAAVVPQVVGQFEHMGQQLPWTTQLLIASSDFVRDYGLLVLGVMVGGFVLFK 241 Query: 181 LMI 183 ++ Sbjct: 242 RLL 244 >gi|126696027|ref|YP_001090913.1| Type II secretory pathway component PulF-like protein [Prochlorococcus marinus str. MIT 9301] gi|126543070|gb|ABO17312.1| Type II secretory pathway component PulF-like protein [Prochlorococcus marinus str. MIT 9301] Length = 453 Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 56/161 (34%), Gaps = 6/161 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 D A + +R GLP+ +++ +I S + +R F+ + G ++SE + + Sbjct: 112 KDLAVATKQLSSMIRTGLPLLESLNIIADTSENISIRYSFKEIASGISKGSTMSEMLDKY 171 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G L L +++L +K ++++ A A + Sbjct: 172 PE-----VFNEMYRALVSAGETAGLLPNTLDRQAKLLESLAKIKGQIKSALAYPSAIAIL 226 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + F + V + G + + L Sbjct: 227 TVVIVFIMMLFVIPIFVDIYDQSGAPLPGITQFLINLSDQL 267 >gi|300697738|ref|YP_003748399.1| type II secretion system protein [Ralstonia solanacearum CFBP2957] gi|299074462|emb|CBJ54012.1| Type II secretion system protein [Ralstonia solanacearum CFBP2957] Length = 326 Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 63/146 (43%), Gaps = 5/146 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLSES 68 D+ P +D++ GL + ++ VI + + EF R + G ++ Sbjct: 170 VDDELPVMVDMLRLLQGVGLSIDQSLQVIANEFYGMLPVLAGEFGRANQQFASGRPREQT 229 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + R+ + +++ T+++ + GG + E L L++ + + K + + K Sbjct: 230 LLRIAKMFDSEDLKGLITLLTQVDRFGGAVQEPLRQFGVRLQENRRSRLKERVGKLTVKM 289 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNV 154 + ++ +L + L+ PG+++V Sbjct: 290 TVVMVLTLLPAL--LIITAGPGFVSV 313 >gi|171321820|ref|ZP_02910723.1| type II secretion system protein [Burkholderia ambifaria MEX-5] gi|171092891|gb|EDT38141.1| type II secretion system protein [Burkholderia ambifaria MEX-5] Length = 330 Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 60/158 (37%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57 +K R +D+ P +D++ GL + ++ V+ + SE Sbjct: 168 VKRRAAARRQSVVDELPLFVDMLRLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEVGIAQR 227 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+ R+ +++ ++ + GG + E L LR+ + Sbjct: 228 HFVAGRTREQSMQRLSGGFDNEDLRAIVRLMVQVDKHGGAVQEPLKQFGDRLRETRRAML 287 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + K + ++ +L + L+ PG + V+ Sbjct: 288 RERIGRLTVKMTGVMVLTLLPAL--LIVTAGPGMLAVM 323 >gi|269955644|ref|YP_003325433.1| type II secretion system protein [Xylanimonas cellulosilytica DSM 15894] gi|269304325|gb|ACZ29875.1| type II secretion system protein [Xylanimonas cellulosilytica DSM 15894] Length = 289 Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 24/181 (13%), Positives = 70/181 (38%), Gaps = 4/181 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 K R A+ + + AG+ + A+ + + + + R + + S Sbjct: 96 AKARIARLE-ALEEWTRSLSGVLVAGVGLEQALVSTLRSAPTVLEPQLRLLTARLNARWS 154 Query: 65 LSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++ + + + + + G L+ LA+L+ + + +++A Sbjct: 155 TEAALRAFADDLDDATGDLVAANLILAARRRGAGLATVLASLADSVAADVRSRRQIEADR 214 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + +A+A + + V ++ F+ Y+ + P G ++L + A + ++ ++ + Sbjct: 215 AKPRATARWVTIISAGVLLVLTFSG-QYVQP-FSTPLGQVVLALLLAAYVATLVWLKRLS 272 Query: 184 N 184 N Sbjct: 273 N 273 >gi|77747609|ref|NP_299815.2| fimbrial assembly protein [Xylella fastidiosa 9a5c] Length = 400 Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 52/166 (31%), Gaps = 6/166 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + ++AG+P+ A+ ++ Q + +R+ ++ G SL ESIS+ Sbjct: 60 KDIAFFSRQMATMMKAGVPIVGALDILANGQKNPRMRTMVNQIKNDIEGGSSLYESISKH 119 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L ++ + + +K K++ A + Sbjct: 120 P-----VYFDELYRNLVRAGERAGVLETVLDTIASYKENIEALKGKIRKALFYPVAIVAV 174 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + V + + V + + Sbjct: 175 ALIVSSILLIYVVPQFEDVFKGFGAELPAFTQMIVNFSNFMQRWWW 220 Score = 37.0 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 16/136 (11%), Positives = 44/136 (32%), Gaps = 5/136 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + RAG+P+ +A+ ++ G + + + + +S+ SI+ Sbjct: 263 NSALARFSRTTAVTFRAGVPLVEALGIVAGATGN---KVYSDAVFRMRDDVSVGYSINMS 319 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 +R + + ++ + G L L ++ + + +E +I Sbjct: 320 MRQVGI--FPHMVVQMASIGEEAGALDAMLFKVAEYYEQEVSNAVDGLSSLLEPLIMVFI 377 Query: 133 IGSLPFCVSTLVYFTS 148 + V + Sbjct: 378 GVIVGGMVIAMYLPIF 393 >gi|260770772|ref|ZP_05879701.1| general secretion pathway protein F [Vibrio furnissii CIP 102972] gi|260614009|gb|EEX39199.1| general secretion pathway protein F [Vibrio furnissii CIP 102972] gi|315178813|gb|ADT85727.1| general secretion pathway protein F [Vibrio furnissii NCTC 11218] Length = 407 Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 22/183 (12%), Positives = 52/183 (28%), Gaps = 20/183 (10%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D + V++G+P+ + + + QS P + ++ Sbjct: 68 DLALLTRQLSTLVQSGMPLEECLRAVSEQSEKPRIRNMLAAVRSKVT----EGYTLSDSM 123 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 Q + + G+L L L+ +R+ M++K+ + Sbjct: 124 ADYPQVFDELFRSMVAAGEKSGHLDAVLERLADYAENRQKMRSKLLQAMLYPIVLVVFAV 183 Query: 135 SLPFCVSTLVYFTS-----------PGYMNVLINDP-----RGHMLLGVAAAFMLIGIMV 178 ++ + V P L++ G LL + + + Sbjct: 184 AIVAFLLAAVVPKIVGQFVQMGQELPKSTQFLLSSSDFIQHWGIQLLLALLVIIYVCRWL 243 Query: 179 MRL 181 +R Sbjct: 244 LRK 246 >gi|186473167|ref|YP_001860509.1| type II secretion system protein [Burkholderia phymatum STM815] gi|184195499|gb|ACC73463.1| type II secretion system protein [Burkholderia phymatum STM815] Length = 292 Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 1/147 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 M+ + ++ A L P LD + +V AGL V+ A+ V + P+R EF V+ Sbjct: 134 MRDVRRRYVATVLRQLPIYLDFLTLAVEAGLNVNGAIQKAVEKGPDGPLRREFEHVLRDL 193 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 GL +++ R + EVS I+ ++G L++ L S R + +A+ Sbjct: 194 KSGLKRGDALRRFDERQQIGEVSNLVRTIAQAERMGSGLAKTLRFQSEQRRAERFQRAEK 253 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146 QA+ K ++ + ++ F Sbjct: 254 QAMEAPVKLLFPLLVFIFPVTFIVLGF 280 >gi|115376269|ref|ZP_01463509.1| type IV pilin [Stigmatella aurantiaca DW4/3-1] gi|115366694|gb|EAU65689.1| type IV pilin [Stigmatella aurantiaca DW4/3-1] Length = 380 Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 17/150 (11%), Positives = 44/150 (29%), Gaps = 6/150 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AGLP+ + ++ Q +P + + G + ++++ + Sbjct: 46 FTRQFATMIDAGLPLVQCLDILGSQMENPAFKKVVFAIKGKVEQGSTFADALKDHPK--- 102 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++GG L L L+ + +K KV++ + + Sbjct: 103 --VFDELFVQLCAAGEVGGILDTILNRLAAYREKAEKLKGKVKSAMTYPSVVICVAIGVT 160 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 + V ++ V Sbjct: 161 ALLLLKVTPVFEKMFKDFGSELPAPTQFVV 190 Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 12/130 (9%), Positives = 37/130 (28%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+P+ DA+ V + + E + ++E + + Sbjct: 249 FTRTLGTMISSGVPILDALDVTAKTAGNRTIEEAIYYVR-----GKIAEGKNIAGPLLET 303 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G + L ++ D + +E ++ G + Sbjct: 304 GVFPSMVVQMIGVGEATGAMDAMLNKIADFYDDEVDAAVAGLTAMIEPLLMVFLGGVVGG 363 Query: 139 CVSTLVYFTS 148 + + Sbjct: 364 FLIAMYLPIF 373 >gi|78064719|ref|YP_367488.1| general secretion pathway protein F [Burkholderia sp. 383] gi|77965464|gb|ABB06844.1| General secretion pathway protein F [Burkholderia sp. 383] Length = 405 Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 57/183 (31%), Gaps = 7/183 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L R + + + AGLP+ +A+ V+ Q+ D +R + Sbjct: 55 QRLAFGRKLSQREQ-AILTRQLASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++ + R + + + G L L+ L+ + +K K+ Sbjct: 114 GGHSLANALGQHPR-----DFPEIYRALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I + + + V ++ +A + + Sbjct: 169 LAFTYPGIVTLIAFGIVTFLLSYVVPQVVNVFASTKQQLPVLTIVMMALSDFVRHWWWAI 228 Query: 181 LMI 183 L+ Sbjct: 229 LIA 231 Score = 34.7 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ S+ I G +LS +++ + + P Sbjct: 274 FASTLGILTAAGVPILRALQAAGETLSNRAMRANIDDAIVRVREGSALSRALNNVKTFPP 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+++ L + + +E + G + Sbjct: 334 ------VLVHLIRSGEATGDVTTMLDRAAEGEARELERRTMFLTSLLEPLLILAMGGIVL 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 VIVLAVMLPI 397 >gi|325518470|gb|EGC98169.1| pilus assembly protein [Burkholderia sp. TJI49] Length = 211 Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 59/157 (37%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57 ++ R D+ P +D++ GL + ++ V+ + SE Sbjct: 49 VQRRASSRRQSVEDELPLFVDMLRLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEVGIAQR 108 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+ R+ +++ ++ + GG + E L LR+ + Sbjct: 109 QFVAGRTREQSMQRLSGGFENEDLRAIVRLMVQVDKHGGAVQEPLKQFGDRLRETRRSML 168 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + + K + ++ +L + L+ PG++ V Sbjct: 169 RERIGRLTVKMTGVMVLTLLPAL--LIVTAGPGFLAV 203 >gi|268608767|ref|ZP_06142494.1| type II secretion system protein [Ruminococcus flavefaciens FD-1] Length = 399 Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 22/170 (12%), Positives = 53/170 (31%), Gaps = 12/170 (7%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISR 71 + + + +GL + A+ ++ + + ++ V E G S S ++ Sbjct: 58 TKELAFCCRQLSAMLTSGLTLVKAIDILTKEQENEKARAIWQDVYENVQKGESFSSTLE- 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M F + + G+L + +S +K ++ + Sbjct: 117 ----MHSGSFPDFLISMVGAGETSGSLDIIMQRMSDHYAKENKLKNTIKGAMVYPI---I 169 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++G V L P ++ + +DP L I ++ Sbjct: 170 LLGLCIVIVLFLFIKIMPTFLG-MYDDPSTMPFLT--KVMQAISDFLIHR 216 >gi|218708372|ref|YP_002415993.1| MSHA biogenesis protein MshG [Vibrio splendidus LGP32] gi|218321391|emb|CAV17341.1| MSHA biogenesis protein MshG [Vibrio splendidus LGP32] Length = 407 Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 16/165 (9%), Positives = 45/165 (27%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + + +AG+P+ ++ + + ++ V+ G L+ Sbjct: 67 EVLVLFCRQLYSLTKAGVPLLRSMKGLTQHCENKQLKVALEEVVAELTNGRGLA-----A 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 M + S + + G L +AL L+ + +++ Sbjct: 122 SMQMHPKVFSPLFVSMISVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITF 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 I F ++ V + + + + + Sbjct: 182 ITIAMFVLNIFVIPQFSSMFARFGVNLPLPTRILMGMSEFFVNYW 226 Score = 39.3 bits (90), Expect = 0.21, Method: Composition-based stats. Identities = 10/132 (7%), Positives = 38/132 (28%), Gaps = 5/132 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 ++AG+P++ ++++ + + Q + ++ + Sbjct: 272 LSRFSRTFALMLKAGVPLNQSLSLSAEALDNRFLE-----LRVQGMKSAIEAGSTVSSTA 326 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + + + G + E L ++ + K +E + G Sbjct: 327 INSEIFTPLVIQMISVGEETGRIDELLLEVADFYDREVDYDLKTLTARIEPILLTIVAGM 386 Query: 136 LPFCVSTLVYFT 147 + + Sbjct: 387 VLILALGIFLPM 398 >gi|83747913|ref|ZP_00944945.1| TRANSMEMBRANE TIGHT ADHERENCE TADC RELATED PROTEIN; tadC2 [Ralstonia solanacearum UW551] gi|207739454|ref|YP_002257847.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609] gi|83725446|gb|EAP72592.1| TRANSMEMBRANE TIGHT ADHERENCE TADC RELATED PROTEIN; tadC2 [Ralstonia solanacearum UW551] gi|206592830|emb|CAQ59736.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609] Length = 326 Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 63/146 (43%), Gaps = 5/146 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLSES 68 D+ P +D++ GL + ++ VI + + EF R + G ++ Sbjct: 170 VDDELPVMVDMLRLLQGVGLSIDQSLQVIANEFYGMLPVLAGEFGRANQQFASGRPREQT 229 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + R+ + +++ T+++ + GG + E L L++ + + K + + K Sbjct: 230 LLRIAKMFDSEDLKGLITLLTQVDRFGGAVQEPLRQFGVRLQENRRSRLKERVGKLTVKM 289 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNV 154 + ++ +L + L+ PG+++V Sbjct: 290 TVVMVLTLLPAL--LIITAGPGFVSV 313 >gi|323493498|ref|ZP_08098620.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546] gi|323312321|gb|EGA65463.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546] Length = 284 Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 61/161 (37%), Gaps = 6/161 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + +K + P+ALD++V V +G + + + S + E+ + Sbjct: 123 VDWRVKAVIHDIAKNIPDALDLMVVCVSSGQSLETTFNTVGEEMKTISQSLSREWLQTAN 182 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + S +++ + + L EV+ ++ + G ++EAL ++ R + ++ Sbjct: 183 EIAVLDSPQKALFNLDERLKLPEVNNMIVTMAQALKFGTPMAEALKLIASDNRQYQMLEL 242 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158 + + AK S + F + +V + L Sbjct: 243 EEWVGKIPAKMS---FPLVVFIMMPVVVIIVAPMVLSLFQT 280 >gi|301026087|ref|ZP_07189562.1| type II secretion system F domain protein [Escherichia coli MS 69-1] gi|300395658|gb|EFJ79196.1| type II secretion system F domain protein [Escherichia coli MS 69-1] Length = 400 Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 21/182 (11%), Positives = 55/182 (30%), Gaps = 22/182 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLADKVKSALRYPIIILAMAII 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + G +L+ + +++ Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPVLTQGIMTLADFSGEWGWLLVLFGFLLAIANKLLI 235 Query: 180 RL 181 R Sbjct: 236 RR 237 >gi|28493158|ref|NP_787319.1| hypothetical protein TWT191 [Tropheryma whipplei str. Twist] gi|28476198|gb|AAO44288.1| unknown [Tropheryma whipplei str. Twist] Length = 298 Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 59/146 (40%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +KKR K L++ P+A + + SV AG V DA+ I S E ++V+ Sbjct: 146 LRRYVKKRKQKILNEMPSAFEFLSLSVSAGEGVLDAIKRICFISKGEFSIELKKVLIGVS 205 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +L + RM + + + + I + G L++ L ++ R+ + Q Sbjct: 206 SGDTLERCLKRMAAKLNIVSIDRAVSQIITAIERGTPLADILIKQAKEARNATRVALIEQ 265 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146 A E ++ + F Sbjct: 266 AGKKEIAMMFPLVFFILPVTILFAIF 291 >gi|127514545|ref|YP_001095742.1| general secretion pathway protein F [Shewanella loihica PV-4] gi|126639840|gb|ABO25483.1| general secretion pathway protein F [Shewanella loihica PV-4] Length = 406 Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 62/177 (35%), Gaps = 8/177 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 + I V AGLPV +A+ + Q D + S V G SL++S++ Sbjct: 66 AELALITRQIATLVAAGLPVEEALKAVGQQCEKDRLASMVMAVRSRVVEGYSLADSMAEF 125 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G+L L L+ R+ +K K+ + + Sbjct: 126 P-----HIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKTKMTQAMIYPIVLTLV 180 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML--IGIMVMRLMINFDV 187 S+ + V G + + +A++ + G++V+ ++I V Sbjct: 181 AISVIAILLAAVVPQVVGQFEHMGQELPWTTQFLIASSDFVRDYGLIVIGVIIALVV 237 >gi|289650993|ref|ZP_06482336.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. aesculi str. 2250] Length = 177 Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 15/113 (13%), Positives = 37/113 (32%), Gaps = 6/113 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMV 73 D + ++AG+P+ + +I + +P + + G S + ++ R Sbjct: 67 DIAFFSRQMATMMKAGVPLLQSFDIISEGAENPNMRSLVESLKQEVSAGNSFATALRRKP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + + G L L ++ + +KAK++ Sbjct: 127 E-----YFDELFCNLVDAGEQAGALESLLDRVASYKEKTEKLKAKIKKAMTYP 174 >gi|318604217|emb|CBY25715.1| type II/IV secretion system protein TadC,associated with Flp pilus assembly [Yersinia enterocolitica subsp. palearctica Y11] Length = 274 Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 59/147 (40%), Gaps = 2/147 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 +K+++ KRT L P +DI V++G+ + ++++ + +++ Sbjct: 117 VKNIVAKRTKSLLRSLPFFIDITAACVQSGMTIDNSLSYSAKKFELINADLSLIMLKVTR 176 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + L +I + E+ F + + G + E L LS+ +R+ + + + Sbjct: 177 RAEINGLENAIKEFNQSSTELEIRMFCSALQYSISFGATVYEQLIKLSKDMREMQLLVTE 236 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVY 145 + + AK + + + LV Sbjct: 237 EKISKLTAKLTIPLFLFILIPFIVLVI 263 >gi|262044791|ref|ZP_06017836.1| general secretion pathway protein F [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037874|gb|EEW39100.1| general secretion pathway protein F [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 230 Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 17/143 (11%), Positives = 40/143 (27%), Gaps = 7/143 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D + V AG+P+ A+ + Q R + L Sbjct: 65 DLALLTRQLATLVAAGIPLEKALDAVAQQCE----KPSLRTLMAGVRSKVLEGHSLAEAM 120 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + G+L L L+ R+ ++A++ + + Sbjct: 121 RGYPACFDGLFCAMVAAGETSGHLDGVLNRLADYTEQRQQLRARLLQAMIYPI---VLTL 177 Query: 135 SLPFCVSTLVYFTSPGYMNVLIN 157 ++ L+ P + ++ Sbjct: 178 VAISVIAILLSTVVPKVVEQFVH 200 >gi|229521805|ref|ZP_04411223.1| general secretion pathway protein F [Vibrio cholerae TM 11079-80] gi|229341399|gb|EEO06403.1| general secretion pathway protein F [Vibrio cholerae TM 11079-80] gi|327485200|gb|AEA79607.1| General secretion pathway protein F [Vibrio cholerae LMA3894-4] Length = 406 Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 64/183 (34%), Gaps = 20/183 (10%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + V++G+P+ + + + QS +R+ V G +LS+S+ Sbjct: 67 DLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G+L L L+ +R+ M++K+Q + ++ Sbjct: 127 -----HVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPV---VLV 178 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-----------AFMLIGIMVMRLM 182 V+ L+ P + + + +L+G++++ + Sbjct: 179 VFAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYL 238 Query: 183 INF 185 + + Sbjct: 239 VRW 241 >gi|330721234|gb|EGG99334.1| General secretion pathway protein F [gamma proteobacterium IMCC2047] Length = 405 Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 62/198 (31%), Gaps = 23/198 (11%) Query: 5 IKKRTAKFL---------DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRR 54 ++R F+ D + V+A LP+ +A++ + Q+ VRS Sbjct: 48 KQQRQKTFVSLLSPHMSVRDLALLTRQLATLVQASLPLEEALSAVAQQTTKPKVRSMVLA 107 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 V G +L+ ++ R P + G L + L L+ Sbjct: 108 VRSKVLEGHTLANALGEFPRAFP-----EIYRATVAAGEKSGFLDQILNRLADYTESSHE 162 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML- 173 + K+ + + + + + P + V I+ + L V Sbjct: 163 SRQKIMMALLYPVILLLLSIIIVVGLMVYIV---PDVVEVFIDTGQQLPALTVGLMAFSD 219 Query: 174 ----IGIMVMRLMINFDV 187 GI ++ +I V Sbjct: 220 FIAGFGIYLLLALIGLAV 237 >gi|292489326|ref|YP_003532213.1| type IV pilus assembly protein tapC [Erwinia amylovora CFBP1430] gi|292898450|ref|YP_003537819.1| protein transport protein [Erwinia amylovora ATCC 49946] gi|291198298|emb|CBJ45404.1| protein transport protein [Erwinia amylovora ATCC 49946] gi|291554760|emb|CBA22553.1| Type IV pilus assembly protein tapC [Erwinia amylovora CFBP1430] gi|312173491|emb|CBX81745.1| Type IV pilus assembly protein tapC [Erwinia amylovora ATCC BAA-2158] Length = 399 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 17/144 (11%), Positives = 41/144 (28%), Gaps = 6/144 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMVRYMP 77 L + ++AG+P+ + ++ + + + G S+++ P Sbjct: 64 FLRQLATLLKAGMPLPACLQLLADGHPEAGWQALLIHLHQRISAGEPFSQALREWPDVFP 123 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + +L G L E L+ ++ ++ KVQ + + Sbjct: 124 PLIP-----ALVHIGELTGELDECCLQLAIQQDKQQLLRQKVQKALRYPLVIMAVALLVS 178 Query: 138 FCVSTLVYFTSPGYMNVLINDPRG 161 + V G Sbjct: 179 IGMLVFVLPEFVAIYRSFNAPLPG 202 >gi|254784516|ref|YP_003071944.1| general secretion pathway protein F [Teredinibacter turnerae T7901] gi|237685057|gb|ACR12321.1| general secretion pathway protein F [Teredinibacter turnerae T7901] Length = 410 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 59/173 (34%), Gaps = 8/173 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72 D + V++GLP+ + +A QS P +V GLSL+++++ + Sbjct: 71 RDVSLVTRQLASLVQSGLPLDEVLASTAKQSRKPAAKTIMLQVRSRVLEGLSLAQAMAEI 130 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R + + G L L L+ + K K++ + + Sbjct: 131 PR-----VFDGLYRAMVRAGESSGYLGPVLERLADYTERSQETKQKLKGAMVYPIIMMLV 185 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI--GIMVMRLMI 183 S+ + V G + + A+ L+ G+ ++ ++ Sbjct: 186 SISVVTLMMVKVVPNLVGMFERNKQELPFVTKFLIGASNFLVNYGVFLLLGIV 238 Score = 35.1 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 46/127 (36%), Gaps = 7/127 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +G+P+ +A+ + ++ +R+ + V G SL +++ + + Sbjct: 283 LGLLANSGVPLLEALRIAAQVLTNHELRAAAKEVAVLVQEGSSLHKALDSV------EVF 336 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 ++ + G L+E L + +R ME ++ G + F V Sbjct: 337 PPLLVQMAASGEANGKLAEQLLHAARNQERELEFTVNTALGLMEPFMVLFMGGVVTFIVI 396 Query: 142 TLVYFTS 148 ++ Sbjct: 397 AILLPIF 403 >gi|229513659|ref|ZP_04403123.1| general secretion pathway protein F [Vibrio cholerae TMA 21] gi|229349536|gb|EEO14492.1| general secretion pathway protein F [Vibrio cholerae TMA 21] Length = 406 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 64/183 (34%), Gaps = 20/183 (10%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + V++G+P+ + + + QS +R+ V G +LS+S+ Sbjct: 67 DLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G+L L L+ +R+ M++K+Q + ++ Sbjct: 127 -----HVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPV---VLV 178 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-----------AFMLIGIMVMRLM 182 V+ L+ P + + + +L+G++++ + Sbjct: 179 VFAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYL 238 Query: 183 INF 185 + + Sbjct: 239 VRW 241 >gi|127514367|ref|YP_001095564.1| type II secretion system protein [Shewanella loihica PV-4] gi|126639662|gb|ABO25305.1| type II secretion system protein [Shewanella loihica PV-4] Length = 422 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 55/173 (31%), Gaps = 14/173 (8%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMV 73 D I + AG+P+ + ++ P E ++ G+ LS+S+ Sbjct: 82 DIAMITRQIATMLAAGVPIVTTLEMLGRGHEKPRMRELLGTIVADVQSGIPLSDSLK--- 138 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 Q + + G+L ++ + +K+K++ A + Sbjct: 139 --PHRQYFDDLYVDLVGAGEHSGSLDAVFDRIATYREKAEALKSKIKKAMFYPAAVIVVA 196 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA--------FMLIGIMV 178 ++ + V + + V+ + F +IGI+V Sbjct: 197 IAVTTLLLLFVVPQFEDIFAGFGAELPAFTQMIVSISRWLQSSWYFFVIGIVV 249 >gi|171741513|ref|ZP_02917320.1| hypothetical protein BIFDEN_00598 [Bifidobacterium dentium ATCC 27678] gi|283455153|ref|YP_003359717.1| hypothetical protein BDP_0212 [Bifidobacterium dentium Bd1] gi|171277127|gb|EDT44788.1| hypothetical protein BIFDEN_00598 [Bifidobacterium dentium ATCC 27678] gi|283101787|gb|ADB08893.1| hypothetical membrane-spanning protein, pilus assembly protein [Bifidobacterium dentium Bd1] Length = 270 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 60/165 (36%), Gaps = 5/165 (3%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + SVR+G + A + G + R+ E +M R Sbjct: 107 VAALQASVRSGATLVQAFEELGGYAFATPELTRSRIEMVLRCRCPPEEQGGQMRRL---- 162 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + LG S LA + L+ ++ ++ + +A+ ++ +LP Sbjct: 163 -SAELYAACQLSMALGCETSRCLAAVLASLKRQRLLEDLHRNAFAMPQATVKLLMALPLL 221 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + L D RG + LG A IG++ +R+++ Sbjct: 222 TVLLGEGMGARPLAFLCGDARGLLCLGFALGCYAIGLLWIRVLLR 266 >gi|218133637|ref|ZP_03462441.1| hypothetical protein BACPEC_01506 [Bacteroides pectinophilus ATCC 43243] gi|217991012|gb|EEC57018.1| hypothetical protein BACPEC_01506 [Bacteroides pectinophilus ATCC 43243] Length = 403 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 18/171 (10%), Positives = 58/171 (33%), Gaps = 6/171 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 D ++AG+ V +A++++ Q+ + +++ + V G +LS ++ Sbjct: 64 RDLSVFCRQFSSIIKAGVNVINALSMMSEQTENKKLKAAIKNVQSNVEKGETLSSAMRSE 123 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P + + G+L A+ ++ + V+ + + Sbjct: 124 GDIFP-----SLLVSMVAAGEASGSLETAIERMAIQFEKDAKISGMVKKAMIYPIILIVV 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + + V L + ++ + + ++ + ++I Sbjct: 179 MIGVVIAMMMFVIPNFMDMFEGLDAEMPFMTVMVINMSNFILDRWWLLILI 229 Score = 41.3 bits (95), Expect = 0.059, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 43/129 (33%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 I+ + AG+P+ A+ + G + + ++ G++L S+ + Sbjct: 272 FSRIMSTLLSAGMPMISAIEIAAGTMDNVLFK---DALQKVRSGVALGMGFSQ--QIGVT 326 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + GN+ + L N++ + + + ME + + Sbjct: 327 RLFPAMLVHMVGIGEETGNIEDMLTNVANYYDEEVELATQSVTALMEPMIIIVMAVVVGA 386 Query: 139 CVSTLVYFT 147 V + Sbjct: 387 LVLAIYQPM 395 >gi|260222245|emb|CBA31615.1| General secretion pathway protein F [Curvibacter putative symbiont of Hydra magnipapillata] Length = 422 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 63/171 (36%), Gaps = 14/171 (8%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + V AGLP+ A++ + ++ R + + G L ++++ + Sbjct: 88 WTRQLAGLVSAGLPLERALSSLAEEAETPAQRDVVATIRSEVNGGKPLGTALAQHPK--- 144 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 E S + + G L L L+ L +++N+ +K+ ++ + Sbjct: 145 --EFSDIYVAVVSAGEQSGQLGLVLERLADDLEEQQNLSSKLMGAALYPA---IVSVVAL 199 Query: 138 FCVSTLVYFTSPGYMNVLIND-----PRGHMLLGVAAAFMLIGIMVMRLMI 183 V L+ + P NV ++L ++ A G++ + +I Sbjct: 200 VIVLFLLAYVVPQIANVFAGSKQALPWLTRVMLAISDAVRSYGLLALIAII 250 Score = 39.3 bits (90), Expect = 0.22, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 36/129 (27%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ A+ S+ +E L + S + R Sbjct: 291 FASTLAMLAAAGVPILKALQAAAETLSNRAMR--DDALEALTLVREGAPLASALARNQRF 348 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G L L + LR +A A +E + + Sbjct: 349 PALLSMFARL---GEQTGRLPHMLDRAALQLRTEVQRRALQLATLLEPLLIVAMGLVVML 405 Query: 139 CVSTLVYFT 147 V ++ Sbjct: 406 IVLAVLMPI 414 >gi|238789152|ref|ZP_04632940.1| Type II secretion system protein [Yersinia frederiksenii ATCC 33641] gi|238722684|gb|EEQ14336.1| Type II secretion system protein [Yersinia frederiksenii ATCC 33641] Length = 264 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 63/157 (40%), Gaps = 4/157 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 + +I +RT L P +DI V++G+ + ++++ + +I Sbjct: 104 INKVIIRRTESVLKSLPFFIDITAACVQSGMTIDNSLSYAAKKFELINHDLSLIMIRMIK 163 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + L +I + E+ F + + G ++ + L NLS+ +R+ + + + Sbjct: 164 RAEINGLESAIKELHHSSNALEIKMFCSALQYSISFGSSVYDQLINLSQDMREMQLLVTE 223 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + AK + + + LV SP + +L Sbjct: 224 ERISKLSAKLTFPLFLFILIPFVVLV--ISPSVLEIL 258 >gi|254522252|ref|ZP_05134307.1| general secretion pathway protein F [Stenotrophomonas sp. SKA14] gi|219719843|gb|EED38368.1| general secretion pathway protein F [Stenotrophomonas sp. SKA14] Length = 338 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 20/142 (14%), Positives = 41/142 (28%), Gaps = 4/142 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + AG P+ A+++++ E R T + + Sbjct: 67 AALLQFTQQLATLLGAGQPLDRALSILL----GLPEDERSRRAITDIRDVVRGGAPLSTA 122 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + + GG+L E L L+ L + ++ KV + ++ Sbjct: 123 LERQHGLFSRLYVNMVRAGEAGGSLHETLQRLADYLERSRALQGKVINALVYPAILLVVV 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155 G + V L Sbjct: 183 GGALLFLLGYVVPQFAQMYESL 204 >gi|313497414|gb|ADR58780.1| XcpS [Pseudomonas putida BIRD-1] Length = 400 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 54/171 (31%), Gaps = 7/171 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + AG+P+ DA+A + Q P V L L Sbjct: 53 RRQRLSRAQLCELTRQLATLTGAGIPLVDALATLERQLRQPALH-SVLVALRGSLAEGLG 111 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + S + P + + G+L++ L L+ L + + K + + Sbjct: 112 LARSLARQGAPFTG---LYCALVEAGERSGHLAQVLTRLADHLEQVQRQQHKARTALIYP 168 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++G V L+ F P + + L+ + G++ Sbjct: 169 A---VLMGVSLAVVIGLMTFVVPKLTEQFAHAGQSLPLITSLLIGLSQGLV 216 Score = 38.6 bits (88), Expect = 0.39, Method: Composition-based stats. Identities = 11/127 (8%), Positives = 32/127 (25%), Gaps = 5/127 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + +G+ + +A+ V + + G + + P Sbjct: 270 RSLAILTGSGVALLEALQVATETIGNRRIRLAMEQVRQHVQGGTSLHRALDASQQFPP-- 327 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + G L++ L ++ + E + + F V Sbjct: 328 ---LLVNMVGSGEASGTLADMLERVADDQERGFARQVDTAMALFEPLMILVMGAVVLFIV 384 Query: 141 STLVYFT 147 ++ Sbjct: 385 LAVLLPI 391 >gi|24111551|ref|NP_706061.1| type IV pilin biogenesis protein [Shigella flexneri 2a str. 301] gi|30061673|ref|NP_835844.1| type IV pilin biogenesis protein [Shigella flexneri 2a str. 2457T] gi|24050311|gb|AAN41768.1| putative integral membrane protein [Shigella flexneri 2a str. 301] gi|30039915|gb|AAP15649.1| putative integral membrane protein [Shigella flexneri 2a str. 2457T] gi|281599468|gb|ADA72452.1| putative integral membrane protein [Shigella flexneri 2002017] gi|313646513|gb|EFS10974.1| bacterial type II secretion system F domain protein [Shigella flexneri 2a str. 2457T] gi|332762106|gb|EGJ92375.1| bacterial type II secretion system protein F domain protein [Shigella flexneri 4343-70] gi|332762314|gb|EGJ92581.1| bacterial type II secretion system protein F domain protein [Shigella flexneri 2747-71] gi|332764951|gb|EGJ95179.1| bacterial type II secretion system protein F domain protein [Shigella flexneri K-671] gi|332768894|gb|EGJ99073.1| bacterial type II secretion system F domain protein [Shigella flexneri 2930-71] gi|333009150|gb|EGK28606.1| bacterial type II secretion system protein F domain protein [Shigella flexneri K-218] gi|333010600|gb|EGK30033.1| bacterial type II secretion system protein F domain protein [Shigella flexneri VA-6] gi|333022364|gb|EGK41602.1| bacterial type II secretion system protein F domain protein [Shigella flexneri K-304] Length = 400 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 55/182 (30%), Gaps = 22/182 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEA 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKSQRQLTDKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + G +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGFLLAIANKLLM 235 Query: 180 RL 181 R Sbjct: 236 RR 237 >gi|148546332|ref|YP_001266434.1| general secretion pathway protein F [Pseudomonas putida F1] gi|148510390|gb|ABQ77250.1| general secretion pathway protein F [Pseudomonas putida F1] Length = 400 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 54/171 (31%), Gaps = 7/171 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + AG+P+ DA+A + Q P V L L Sbjct: 53 RRQRLSRAQLCELTRQLATLTGAGIPLVDALATLERQLRQPALH-SVLVALRGSLAEGLG 111 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + S + P + + G+L++ L L+ L + + K + + Sbjct: 112 LARSLARQGAPFTG---LYCALVEAGERSGHLAQVLTRLADHLEQVQRQQHKARTALIYP 168 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++G V L+ F P + + L+ + G++ Sbjct: 169 A---VLMGVSLAVVIGLMTFVVPKLTEQFAHAGQSLPLITSLLIGLSQGLV 216 Score = 38.6 bits (88), Expect = 0.40, Method: Composition-based stats. Identities = 11/127 (8%), Positives = 32/127 (25%), Gaps = 5/127 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + +G+ + +A+ V + + G + + P Sbjct: 270 RSLAILTGSGVALLEALQVATETIGNRRIRLAMEQVRQHVQGGTSLHRALDASQQFPP-- 327 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + G L++ L ++ + E + + F V Sbjct: 328 ---LLVNMVGSGEASGTLADMLERVADDQERGFARQVDTAMALFEPLMILVMGAVVLFIV 384 Query: 141 STLVYFT 147 ++ Sbjct: 385 LAVLLPI 391 >gi|229918377|ref|YP_002887023.1| type II secretion system protein [Exiguobacterium sp. AT1b] gi|229469806|gb|ACQ71578.1| type II secretion system protein [Exiguobacterium sp. AT1b] Length = 405 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 67/167 (40%), Gaps = 6/167 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + +RAG+P+ A +++ V S+ ++ +V + G++ SE+I + Sbjct: 64 EHLIMYVRQFATLIRAGVPIVRATSILRVQTESNVLKKALSQVEDDLKEGIAYSEAIKKH 123 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R S F + +++ + GNL EAL + L+ + ++K KV + + + Sbjct: 124 PR-----VFSNFFSSMALAGETSGNLEEALDQIGLQLQKQYDVKRKVISALTYPLVVSIV 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + V T L + + VA + + + Sbjct: 179 AIGVVAFLMVNVVPTFASIFGQLGGELPLITRIVVAVSDFIAAFWWL 225 >gi|90411988|ref|ZP_01219995.1| putative Type IV pilin biogenesis protein [Photobacterium profundum 3TCK] gi|90326966|gb|EAS43345.1| putative Type IV pilin biogenesis protein [Photobacterium profundum 3TCK] Length = 406 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 24/182 (13%), Positives = 52/182 (28%), Gaps = 13/182 (7%) Query: 3 HLIKKRT----AKFLDDFP-----NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR 53 IK+R +K + + + +G+PV ++ +I + Sbjct: 46 KKIKRRKPSTFSKLRNQIKPEDITETTRQLATMIESGVPVVQSLKLIS----NSHHKAEV 101 Query: 54 RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 R TQ + + F + + G+L+E + ++ + Sbjct: 102 RATLTQVTMQVEAGASLSKALKTSSPLFDDFYCDLVATGEQTGHLAEVFSRIATYREKGE 161 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 M+ KV + + + V + D L + A+ L Sbjct: 162 IMRKKVIKAMIYPSMVTLTALIVTVMMLVFVIPQFASIFSSFGADLPLFTQLVINASDFL 221 Query: 174 IG 175 I Sbjct: 222 IA 223 >gi|325845114|ref|ZP_08168425.1| type II secretion system protein F domain protein [Turicibacter sp. HGF1] gi|325488856|gb|EGC91254.1| type II secretion system protein F domain protein [Turicibacter sp. HGF1] Length = 400 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 54/158 (34%), Gaps = 9/158 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D V AG+ + + + ++ Q + ++ +V E G SL ES+S+ Sbjct: 63 DIAVFCRQFYTMVDAGVQIDNCLDILSTQLTHPELKKALTQVHEDVQRGESLYESMSK-- 120 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 +E + ++ GNL L +S M AKV+ + A + Sbjct: 121 ---HEEEFPELLLKMIQSGEVSGNLDTILLRMSVYYEKENKMNAKVKNAMIYPSILAIVA 177 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 + + F P ++ + L A + Sbjct: 178 AGAVTVI---LTFVMPTFIEMFNEMGVELPWLTKALLW 212 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 12/136 (8%), Positives = 40/136 (29%), Gaps = 5/136 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+P++ ++ ++ + V + + + + + P Sbjct: 270 FTRTLSTLLSSGMPLAQSIQIVSEVVQNTVAEQVLLTVRDELVKGEGLSGPMKDAGIFPP 329 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G L E L + D + + +E + + Sbjct: 330 -----MLSSMIHIGEETGALDEILNKTADFYDDELEAQIQATTALIEPLLIVVMGIIIGA 384 Query: 139 CVSTLVYFTSPGYMNV 154 V ++ Y + Sbjct: 385 IVLAIMIPMFEMYTQM 400 >gi|223984513|ref|ZP_03634645.1| hypothetical protein HOLDEFILI_01940 [Holdemania filiformis DSM 12042] gi|223963499|gb|EEF67879.1| hypothetical protein HOLDEFILI_01940 [Holdemania filiformis DSM 12042] Length = 395 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 16/167 (9%), Positives = 61/167 (36%), Gaps = 10/167 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71 + + + +G+P+ +A+ ++ ++ + +++E G SL+ Sbjct: 57 NQELSLMCKQLSAMLSSGIPLVNALEMLRQKSDKKKMKKLYAQLVEEVRKGSSLT----- 111 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + Q + ++ G L + ++ ++ KV + + Sbjct: 112 LAMKQCQQAFPPLLIYLVQAGEMNGTLDSVMERMAGHYDKEYKLRNKVTSALIYPIMLMV 171 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLIN-DPRGHMLLGVAAAFMLIGIM 177 + + + L+ P +++++ + + + LL ++ + ++ Sbjct: 172 VTVA---VILALMTSVVPSFLSMVGDMELPWNTLLLISMSNFIVAYW 215 >gi|114568934|ref|YP_755614.1| type II secretion system protein [Maricaulis maris MCS10] gi|114339396|gb|ABI64676.1| type II secretion system protein [Maricaulis maris MCS10] Length = 411 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 22/179 (12%), Positives = 57/179 (31%), Gaps = 7/179 (3%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSL 65 +R + + + AG+PV++ + ++ Q +R V G L Sbjct: 64 RRQDLSSRERMLVTRQLASLLGAGMPVAECLGLLADQGGRHHMRRVLMAVRARVSEGERL 123 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S+++ + P + ++ G L L+ L+ L + + ++ + Sbjct: 124 SDAMQAFPKSFP-----AVYRAMVSAGEVAGGLDRVLSRLADYLEKEEAVANRITGALVY 178 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI-GIMVMRLMI 183 + + + + T V + +A + L G + ++ Sbjct: 179 PLVLSTVAAGVVTLLMTFVVPRIAEQFTGMGMTLPALTRFMIAVSGFLTEGWPWILGLV 237 >gi|121586625|ref|ZP_01676410.1| general secretion pathway protein F [Vibrio cholerae 2740-80] gi|153212531|ref|ZP_01948278.1| general secretion pathway protein F [Vibrio cholerae 1587] gi|153802195|ref|ZP_01956781.1| general secretion pathway protein F [Vibrio cholerae MZO-3] gi|153802931|ref|ZP_01957517.1| general secretion pathway protein F [Vibrio cholerae MZO-3] gi|153825519|ref|ZP_01978186.1| general secretion pathway protein F [Vibrio cholerae MZO-2] gi|153828358|ref|ZP_01981025.1| general secretion pathway protein F [Vibrio cholerae 623-39] gi|229527343|ref|ZP_04416735.1| general secretion pathway protein F [Vibrio cholerae 12129(1)] gi|254225448|ref|ZP_04919059.1| general secretion pathway protein F [Vibrio cholerae V51] gi|254285926|ref|ZP_04960888.1| general secretion pathway protein F [Vibrio cholerae AM-19226] gi|297581571|ref|ZP_06943494.1| general secretion pathway protein F [Vibrio cholerae RC385] gi|121549184|gb|EAX59217.1| general secretion pathway protein F [Vibrio cholerae 2740-80] gi|124116402|gb|EAY35222.1| general secretion pathway protein F [Vibrio cholerae 1587] gi|124121544|gb|EAY40287.1| general secretion pathway protein F [Vibrio cholerae MZO-3] gi|124122269|gb|EAY41012.1| general secretion pathway protein F [Vibrio cholerae MZO-3] gi|125622082|gb|EAZ50405.1| general secretion pathway protein F [Vibrio cholerae V51] gi|148876188|gb|EDL74323.1| general secretion pathway protein F [Vibrio cholerae 623-39] gi|149740804|gb|EDM54895.1| general secretion pathway protein F [Vibrio cholerae MZO-2] gi|150424108|gb|EDN16047.1| general secretion pathway protein F [Vibrio cholerae AM-19226] gi|229334975|gb|EEO00460.1| general secretion pathway protein F [Vibrio cholerae 12129(1)] gi|297534409|gb|EFH73247.1| general secretion pathway protein F [Vibrio cholerae RC385] Length = 406 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 64/183 (34%), Gaps = 20/183 (10%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + V++G+P+ + + + QS +R+ V G +LS+S+ Sbjct: 67 DLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G+L L L+ +R+ M++K+Q + ++ Sbjct: 127 -----HVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPV---VLV 178 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-----------AFMLIGIMVMRLM 182 V+ L+ P + + + +L+G++++ + Sbjct: 179 VFAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYL 238 Query: 183 INF 185 + + Sbjct: 239 VRW 241 >gi|254507436|ref|ZP_05119571.1| type II secretory pathway, component PulF [Vibrio parahaemolyticus 16] gi|219549692|gb|EED26682.1| type II secretory pathway, component PulF [Vibrio parahaemolyticus 16] Length = 406 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 53/175 (30%), Gaps = 8/175 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + + +AG+P+ ++ + S+ ++ V + G SL+ Sbjct: 66 EALVIFCRQLYSLTKAGVPLLRSMKGLSSNCSNKQLQHALEEVTQELTNGRSLAG----- 120 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 M + S + + G L +AL L+ + +++ Sbjct: 121 SMQMHSKVFSPLFVSMINVGENTGRLDQALLQLANYYEQEVETRKRIKTAMRYPTFVISF 180 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 I F ++ V + D + + + + ++ MI V Sbjct: 181 IVIALFILNVKVIPQFSTMFSRFGVDLPLPTRILITMSDFFVNYWLV--MIAVIV 233 Score = 42.8 bits (99), Expect = 0.024, Method: Composition-based stats. Identities = 11/135 (8%), Positives = 35/135 (25%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 ++AG+P++ ++A+ + + S+ + Sbjct: 268 RAQLSRFSRTFALMLKAGVPLNQSLALAAEALGNKFLE-----NRLIEMKSSIEAGGTIS 322 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G + E L ++ + K +E + Sbjct: 323 STAINSGIFTPLVIQMISVGEETGRIDELLLEVADFYDREVDYDLKTLTARIEPILLLVV 382 Query: 133 IGSLPFCVSTLVYFT 147 G + + Sbjct: 383 AGMVLILALGIFLPM 397 >gi|283783891|ref|YP_003363756.1| protein transport protein HofC [Citrobacter rodentium ICC168] gi|282947345|emb|CBG86890.1| protein transport protein HofC [Citrobacter rodentium ICC168] Length = 400 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 61/169 (36%), Gaps = 14/169 (8%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +SD + ++ GQ D + G LS ++++ Sbjct: 61 AEVIQQLATLLQAGLTLSDGLWLLAGQHPDKQWQALLESLARELENGAPLSSALAQWPDI 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L + L+R + +K ++ KV I+ Sbjct: 121 FPP-----LYLAMIRTGELTGKLDVCCSELARQQKAQKQLRDKVAKALRYPT---IILTM 172 Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP---RGHMLLGVAAAFMLIGIMVM 179 V +++F P + + N P ++ VA G +V+ Sbjct: 173 AVMVVLAMLHFVLPEFAAIYRTFNTPLPALTQWIIAVANGSARWGWLVI 221 >gi|126666453|ref|ZP_01737432.1| general secretion pathway protein F [Marinobacter sp. ELB17] gi|126629254|gb|EAZ99872.1| general secretion pathway protein F [Marinobacter sp. ELB17] Length = 403 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 56/161 (34%), Gaps = 9/161 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D + +++G+P+ ++V QS+ +RS + G S ++S+ Sbjct: 64 ADLALVTRQMATLIQSGIPIEQTLSVTSKQSNNPRIRSMLIAIRAKVMEGHSFADSLGEF 123 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R P + G+L L L+ R+ + K+Q ++ + Sbjct: 124 PRAFP-----RLFCSTVAAGEHAGHLDLVLNRLADYTESRQESRQKIQLAAIYPI---IL 175 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 V L+ + P + V + + LL A M Sbjct: 176 TVVAVSIVVFLLTYVVPDIIAVFVRQGQQLPLLTRAMLSMS 216 Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 18/126 (14%), Positives = 42/126 (33%), Gaps = 7/126 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +G+P+ DA+ + +D +R E + G +L ++ + + P+ Sbjct: 276 LSILTTSGVPLVDAMRIAGEVLGNDYLRQELKDAARKVSEGGALHRALDQSGYFPPM--- 332 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L L +R+ + K E + G + V Sbjct: 333 ---MLHMIASGEASGELDSMLERTARMQENTLQAKIAAIVGLFEPLMLLLMGGVVLIIVM 389 Query: 142 TLVYFT 147 ++ Sbjct: 390 AIMLPI 395 >gi|294625722|ref|ZP_06704342.1| general secretion pathway protein F [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666165|ref|ZP_06731421.1| general secretion pathway protein F [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325928118|ref|ZP_08189329.1| Type II secretory pathway, component [Xanthomonas perforans 91-118] gi|292599958|gb|EFF44075.1| general secretion pathway protein F [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604081|gb|EFF47476.1| general secretion pathway protein F [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325541507|gb|EGD13038.1| Type II secretory pathway, component [Xanthomonas perforans 91-118] Length = 405 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 19/183 (10%), Positives = 56/183 (30%), Gaps = 5/183 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ L++K+ + + AG P+ A+++++ E R + Sbjct: 54 LRMLLRKKPFD-NAALVQFTQQLATLIGAGQPLDRALSILMD----LPEDEKSRRVIGDV 108 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + S + + GG++ + L L+ L + ++ KV Sbjct: 109 RDTVRGGAPLSSALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKVI 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + ++G + V L ++ ++ ++ Sbjct: 169 NALIYPAILLAVVGCALLFLLGYVVPQFAQMYESLDVALPWFTQAVLSVGLLVRDWWIVL 228 Query: 181 LMI 183 +++ Sbjct: 229 IVV 231 >gi|225351276|ref|ZP_03742299.1| hypothetical protein BIFPSEUDO_02868 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158732|gb|EEG71974.1| hypothetical protein BIFPSEUDO_02868 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 252 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 52/162 (32%), Gaps = 5/162 (3%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + SVR+G + A + G R+ E ++ R Sbjct: 88 LRASVRSGATLVQAFEELGGTPFATPELTRLRITMVIRSRCPPKEQCGQVERLSG----- 142 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + LG L ++ L+ ++ + KA+ ++ +LP Sbjct: 143 ELYAACQLSLTLGCETGRCLQAVAESLKRQRLLDDLRTNAFAMPKATVKLLMALPLLTVL 202 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + L++ +G LG A G++ +R ++ Sbjct: 203 LGEGMGAHSLAFLVSGVKGLACLGFALCCYTFGLIWIRALMR 244 >gi|306823786|ref|ZP_07457160.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679] gi|304552784|gb|EFM40697.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679] Length = 270 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 59/165 (35%), Gaps = 5/165 (3%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + SVR+G + A + G + R+ E +M R Sbjct: 107 VAALQASVRSGATLVQAFEELGGCAFATPELTRSRIEMVLRCRCPPEEQGEQMRRL---- 162 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + LG S LA + L+ ++ + + +A+ ++ +LP Sbjct: 163 -SAELYAACQLSMALGCETSRCLAAVLASLKRQRLLNDLRRNAFAMPQATVKLLMALPLL 221 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + L D RG + LG A IG++ +R+++ Sbjct: 222 TVLLGEGMGARPLAFLCGDARGLLCLGFALGCYAIGLLWIRVLLR 266 >gi|260438825|ref|ZP_05792641.1| type 4 fimbrial assembly protein PilC [Butyrivibrio crossotus DSM 2876] gi|292808815|gb|EFF68020.1| type 4 fimbrial assembly protein PilC [Butyrivibrio crossotus DSM 2876] Length = 403 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 17/170 (10%), Positives = 48/170 (28%), Gaps = 7/170 (4%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 + D ++AG+ V A+ ++ Q+ + + + Sbjct: 58 KKVKVRDLSAFCRQFNSLLKAGVGVITALDMLGDQTENRTLKQSIYNVRDGVQKGD---- 113 Query: 69 ISRMVRYMPLQEV-SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + M ++ + + GN+ AL ++ KA ++ M Sbjct: 114 --TLANSMKKEDCFPSLLVSMMEAGEQSGNIEIALERMAEHFEKDGRAKAALKKAMMYPI 171 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + ++ + V + + G ++ + + G Sbjct: 172 ILGIVAIAVLVIMVVAVIPSFSSMFADMDAKLPGITRGLLSLSDFIRGYW 221 Score = 42.8 bits (99), Expect = 0.022, Method: Composition-based stats. Identities = 19/142 (13%), Positives = 44/142 (30%), Gaps = 12/142 (8%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + +G+ + +A+ + G + + G+ L+ + + + P Sbjct: 270 FARTFSTMLSSGMSMVEALNITAGTMDNQLFKDVVSDCAVQVQRGVPLTMPLKKSELFPP 329 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + GNL E L N + + + ME +I + Sbjct: 330 ------LIIHMTGIGEESGNLEEMLNNCANYFDEEVEAATQQVMALMEP-----MIIIVL 378 Query: 138 FCVSTLVYFTSPGYMNVLINDP 159 + L+ G M + N Sbjct: 379 AGIVCLILAAIYGPMITMYNTL 400 >gi|171914419|ref|ZP_02929889.1| type IV pilus biogenesis protein PilC [Verrucomicrobium spinosum DSM 4136] Length = 426 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 6/146 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS-LSESISRM 72 + + +GLP+ + V+ Q +P+ + S SES+ + Sbjct: 81 KTLMIFTRQLATLIDSGLPLLRGLTVLGRQEPNPIMKRTINTLADSVQTGSTFSESLQQF 140 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R + + +LGG L L L+ + +K K+ A + I Sbjct: 141 PRI-----YNKLYINMVKAGELGGVLELVLNRLAEYQEKAQKLKNKIVAAMVYPMIVMII 195 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIND 158 + + T++ ++ Sbjct: 196 AVGIMIFLMTVIVPKFEKIFEDMLGS 221 Score = 40.5 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 16/141 (11%), Positives = 39/141 (27%), Gaps = 9/141 (6%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + + V +G+P+ A+ + + + V S+ + Sbjct: 284 QRKSAISR----FTRTLGTLVTSGVPILQALNITRETAGNVVVSDAINKVHDAVKEGESM 339 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + + P + + G L E L ++ + D + +E Sbjct: 340 VAPLEASKVFPP-----MVISMVDVGEETGQLPEMLLKVADVYEDEVDNSVSALTSMLEP 394 Query: 127 KASAWIIGSLPFCVSTLVYFT 147 + + V L Sbjct: 395 LMIVILAVVVGVIVLALFMPL 415 >gi|260774761|ref|ZP_05883664.1| general secretion pathway protein F [Vibrio coralliilyticus ATCC BAA-450] gi|260609323|gb|EEX35475.1| general secretion pathway protein F [Vibrio coralliilyticus ATCC BAA-450] Length = 407 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 58/172 (33%), Gaps = 8/172 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + V++G+P+ + + + QS +R+ V G +L++S++ Sbjct: 68 DLALITRQLATLVQSGMPLEECLKAVSEQSEKPRIRTMLLAVRSKVTEGYTLADSLADFP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G+L L L+ +R+ M++K+Q + Sbjct: 128 -----HIFDDLFRSMVSAGEKSGHLDAVLERLADYAENRQKMRSKLQQAMIYPVVLVVFA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMI 183 + + V G + + LL + GI ++ + Sbjct: 183 VGIVAFLLAAVVPKIVGQFVQMGQELPQSTQFLLASSDFIQNWGIQILVALT 234 >gi|271501353|ref|YP_003334378.1| general secretion pathway protein F [Dickeya dadantii Ech586] gi|270344908|gb|ACZ77673.1| general secretion pathway protein F [Dickeya dadantii Ech586] Length = 408 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 65/184 (35%), Gaps = 15/184 (8%) Query: 7 KRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLS 64 +R+ + D + V A LP+ +A+ + QS + + V G S Sbjct: 60 RRSHRISASDLALLTRQLATLVAAALPLEEALDAVAKQSEKPKLSALMAAVRAKVVEGHS 119 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L+E++ + + G+L L L+ R+ M++++Q + Sbjct: 120 LAEAMGNFP-----GSFERLYCAMVAAGEASGHLDAVLNRLADYTEQRQQMRSRIQQAMI 174 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND-----PRGHMLLGVAAAFMLIGIMVM 179 + VS L+ P + I+ +L+ V+ A G V+ Sbjct: 175 YP---CVLTLVAISVVSILLSAVVPKVVEQFIHMKQTLPLSTRLLMSVSDAVRTYGPWVV 231 Query: 180 RLMI 183 L+I Sbjct: 232 LLLI 235 >gi|300905515|ref|ZP_07123278.1| type II secretion system F domain protein [Escherichia coli MS 84-1] gi|301303794|ref|ZP_07209914.1| type II secretion system F domain protein [Escherichia coli MS 124-1] gi|300402624|gb|EFJ86162.1| type II secretion system F domain protein [Escherichia coli MS 84-1] gi|300840921|gb|EFK68681.1| type II secretion system F domain protein [Escherichia coli MS 124-1] gi|315254904|gb|EFU34872.1| type II secretion system F domain protein [Escherichia coli MS 85-1] Length = 400 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 55/182 (30%), Gaps = 22/182 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + G +L+ + ++M Sbjct: 176 VVVAILHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGFLLAIANKLLM 235 Query: 180 RL 181 R Sbjct: 236 RR 237 >gi|15642725|ref|NP_232358.1| general secretion pathway protein F [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121726690|ref|ZP_01679915.1| general secretion pathway protein F [Vibrio cholerae V52] gi|147675103|ref|YP_001218219.1| general secretion pathway protein F [Vibrio cholerae O395] gi|153817446|ref|ZP_01970113.1| general secretion pathway protein F [Vibrio cholerae NCTC 8457] gi|153821264|ref|ZP_01973931.1| general secretion pathway protein F [Vibrio cholerae B33] gi|227082845|ref|YP_002811396.1| general secretion pathway protein F [Vibrio cholerae M66-2] gi|229507221|ref|ZP_04396726.1| general secretion pathway protein F [Vibrio cholerae BX 330286] gi|229509858|ref|ZP_04399339.1| general secretion pathway protein F [Vibrio cholerae B33] gi|229516979|ref|ZP_04406425.1| general secretion pathway protein F [Vibrio cholerae RC9] gi|229606727|ref|YP_002877375.1| general secretion pathway protein F [Vibrio cholerae MJ-1236] gi|254851268|ref|ZP_05240618.1| general secretion pathway protein F [Vibrio cholerae MO10] gi|255744311|ref|ZP_05418263.1| general secretion pathway protein F [Vibrio cholera CIRS 101] gi|262158579|ref|ZP_06029694.1| general secretion pathway protein F [Vibrio cholerae INDRE 91/1] gi|262170028|ref|ZP_06037717.1| general secretion pathway protein F [Vibrio cholerae RC27] gi|298500454|ref|ZP_07010258.1| general secretion pathway protein F [Vibrio cholerae MAK 757] gi|1170056|sp|P45780|GSPF_VIBCH RecName: Full=General secretion pathway protein F; AltName: Full=Cholera toxin secretion protein epsF gi|609627|gb|AAA58787.1| EpsF [Vibrio cholerae] gi|9657329|gb|AAF95871.1| general secretion pathway protein F [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121630851|gb|EAX63233.1| general secretion pathway protein F [Vibrio cholerae V52] gi|126512032|gb|EAZ74626.1| general secretion pathway protein F [Vibrio cholerae NCTC 8457] gi|126521196|gb|EAZ78419.1| general secretion pathway protein F [Vibrio cholerae B33] gi|146316986|gb|ABQ21525.1| general secretion pathway protein F [Vibrio cholerae O395] gi|227010733|gb|ACP06945.1| general secretion pathway protein F [Vibrio cholerae M66-2] gi|227014617|gb|ACP10827.1| general secretion pathway protein F [Vibrio cholerae O395] gi|229346042|gb|EEO11014.1| general secretion pathway protein F [Vibrio cholerae RC9] gi|229353332|gb|EEO18271.1| general secretion pathway protein F [Vibrio cholerae B33] gi|229354726|gb|EEO19647.1| general secretion pathway protein F [Vibrio cholerae BX 330286] gi|229369382|gb|ACQ59805.1| general secretion pathway protein F [Vibrio cholerae MJ-1236] gi|254846973|gb|EET25387.1| general secretion pathway protein F [Vibrio cholerae MO10] gi|255737836|gb|EET93229.1| general secretion pathway protein F [Vibrio cholera CIRS 101] gi|262021436|gb|EEY40148.1| general secretion pathway protein F [Vibrio cholerae RC27] gi|262029740|gb|EEY48389.1| general secretion pathway protein F [Vibrio cholerae INDRE 91/1] gi|297540623|gb|EFH76680.1| general secretion pathway protein F [Vibrio cholerae MAK 757] Length = 406 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 64/183 (34%), Gaps = 20/183 (10%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + V++G+P+ + + + QS +R+ V G +LS+S+ Sbjct: 67 DLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G+L L L+ +R+ M++K+Q + ++ Sbjct: 127 -----HVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPV---VLV 178 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-----------AFMLIGIMVMRLM 182 V+ L+ P + + + +L+G++++ + Sbjct: 179 VFAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYL 238 Query: 183 INF 185 + + Sbjct: 239 VRW 241 >gi|84394138|ref|ZP_00992871.1| Type II secretory pathway, component PulF [Vibrio splendidus 12B01] gi|84375240|gb|EAP92154.1| Type II secretory pathway, component PulF [Vibrio splendidus 12B01] Length = 407 Score = 62.1 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 18/165 (10%), Positives = 46/165 (27%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + + +AG+P+ ++ + + +++ V+ G LS Sbjct: 67 EVLVLFCRQLYSLTKAGVPLLRSMKGLTQNCENKQLKAALEDVVAELTNGRGLS-----A 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 M + S + + G L +AL L+ + +++ Sbjct: 122 SMQMHPKVFSPLFVSMIGVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVISF 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 I F ++ V D + + + + Sbjct: 182 ILVAMFILNIKVIPQFSSMFARFGVDLPLPTRILIGMSEFFVNYW 226 Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 11/132 (8%), Positives = 38/132 (28%), Gaps = 5/132 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 ++AG+P++ ++++ + + Q + ++ + Sbjct: 272 LSRFSRTFALMLKAGVPLNQSLSLSAEALDNRFLE-----LRVQAMKAAIEAGSTVSSTA 326 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + + + G + E L +S + K +E + G Sbjct: 327 INSEIFTPLVIQMISVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLVVVAGM 386 Query: 136 LPFCVSTLVYFT 147 + + Sbjct: 387 VLILALGIFLPM 398 >gi|330892307|gb|EGH24968.1| putative general secretion pathway protein F [Pseudomonas syringae pv. mori str. 301020] Length = 401 Score = 62.1 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 67/173 (38%), Gaps = 11/173 (6%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65 KR + D + + AG P+ A+A+ QS + S ++E G SL Sbjct: 56 KRKKISDAEVARFTDQLAILLEAGQPLESALALQARQSDRPAMASLLNGLLERVKGGSSL 115 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S ++ + S F + + G L E L+ L+ L + M++ + + + Sbjct: 116 SVAMGA-----EHRTFSNFYLSLVRAGEAAGMLGETLSQLATNLERSRAMRSDLISALIY 170 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 +++ + + L+ + P ++ + + L+ M +GI + Sbjct: 171 PA---FLVCGVFGSLVLLLTYVVPQFVPIFRDLNVPLPLITECI--MALGIFL 218 >gi|331681489|ref|ZP_08382126.1| protein transport protein HofC [Escherichia coli H299] gi|331081710|gb|EGI52871.1| protein transport protein HofC [Escherichia coli H299] Length = 400 Score = 62.1 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 55/182 (30%), Gaps = 22/182 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLADKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + G +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPVLTQGIMTLADFSGEWGWLLVLFGFLLAIANKLLM 235 Query: 180 RL 181 R Sbjct: 236 RR 237 >gi|254552769|ref|ZP_05143216.1| hypothetical protein Mtube_20357 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length = 213 Score = 62.1 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 64/172 (37%), Gaps = 1/172 (0%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 AL+++VR +RAG A ++ ++ PV R V L ++ + Sbjct: 38 QALEAALELVVRELRAGAHPVRAFSIAADETGGPVAVALRAVAARSLLVAEVTAGLLAAT 97 Query: 74 RYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R L + S G ++ + R + +R+ A+V A A+ASA I Sbjct: 98 RSSALPAYWERLGVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAI 157 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + LP L ++ L+ G LL V G++ + + Sbjct: 158 LAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITD 209 >gi|295697644|ref|YP_003590882.1| Type II secretion system F domain protein [Bacillus tusciae DSM 2912] gi|295413246|gb|ADG07738.1| Type II secretion system F domain protein [Bacillus tusciae DSM 2912] Length = 566 Score = 62.1 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 21/158 (13%), Positives = 44/158 (27%), Gaps = 6/158 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 VRAG+P + +V ++ QS + ++ V G +L + + Sbjct: 225 QTLAVFCRQFATLVRAGVPAARSVEILAAQSENRTLKRTLEAVAAEVRQGTALQRAFAAH 284 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P + + G L L + + + K+ + M I Sbjct: 285 PSVFP-----ALFIHMVGAGEFSGQLDLMLDRAALFYERERATRQKITSALMYPAVVLTI 339 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + + T V T + + + Sbjct: 340 ALGVSVFLLTSVIPTFAQTFAQQGVTLPLPTRITLGLS 377 >gi|109896505|ref|YP_659760.1| type II secretion system protein [Pseudoalteromonas atlantica T6c] gi|109698786|gb|ABG38706.1| type II secretion system protein [Pseudoalteromonas atlantica T6c] Length = 405 Score = 62.1 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 22/173 (12%), Positives = 58/173 (33%), Gaps = 7/173 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 +D + ++G+P+ +V + S+ + + V + G +LS ++ R Sbjct: 65 EDLVIFSRQMYSLTKSGIPIIRSVKGLAETSNSERMTKILNDVCDQLERGRTLSSALHRH 124 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + I + G L EA LS + + + +++A + Sbjct: 125 NKVFGQ-----LFVSIVHVGENTGRLDEAFLQLSDYMEREQETRKQIKAATRYPTFVILA 179 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + ++ V + + + +A + I + ++I Sbjct: 180 VVAALIIMNIFVIPVFANMFSSFGAELPLMTRVLLATSDFFI-TKWLHMLICI 231 Score = 40.9 bits (94), Expect = 0.088, Method: Composition-based stats. Identities = 16/133 (12%), Positives = 39/133 (29%), Gaps = 7/133 (5%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74 +R+G+P++ A+ ++ S+ + ++ + G SLS S Sbjct: 270 LSRFARSFSMMLRSGVPLTTALNLVADAVSNAFMADRIVKMRKNIEKGESLSRVASSSKM 329 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + P + + G + E L + + K +E + Sbjct: 330 FTP------LVLQMINVGEETGRVDELLGEAAEFYEREVDYDLKSLTSKIEPILIMVVAA 383 Query: 135 SLPFCVSTLVYFT 147 + + Sbjct: 384 MVLVLALGIFTPM 396 >gi|212633093|ref|YP_002309618.1| type II secretion system protein [Shewanella piezotolerans WP3] gi|212554577|gb|ACJ27031.1| Type II secretion system protein [Shewanella piezotolerans WP3] Length = 407 Score = 62.1 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 54/160 (33%), Gaps = 6/160 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 + I V AGLP+ +A+ + Q D + S V G SL++S++ Sbjct: 68 ELALLTRQIATLVAAGLPIEEALKAVGQQCEKDRLASMVMAVRSRVVEGYSLADSMAEFP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G+L L L+ R+ +K+K+ + + Sbjct: 128 -----HIFDELYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKMTQAMIYPIVLTCVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + + V G + + L ++++ + Sbjct: 183 VGVIAILLAAVVPEVVGQFEHMGQELPWTTELLISSSDFI 222 >gi|110804168|ref|YP_687688.1| type IV pilin biogenesis protein [Shigella flexneri 5 str. 8401] gi|110613716|gb|ABF02383.1| Protein transport protein hofC [Shigella flexneri 5 str. 8401] Length = 400 Score = 62.1 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 22/181 (12%), Positives = 55/181 (30%), Gaps = 22/181 (12%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEAF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 P + +L G L E L+R + ++ + KV++ + + Sbjct: 122 PP-----LYQAMIRTGELTGKLDECCFELARQQKSQRQLTDKVKSALRYPIIILAMAIMV 176 Query: 137 PFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVMR 180 + V + G +L+ + ++MR Sbjct: 177 VVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGFLLAIANKLLMR 236 Query: 181 L 181 Sbjct: 237 R 237 >gi|77747718|ref|NP_780104.2| fimbrial assembly protein [Xylella fastidiosa Temecula1] Length = 400 Score = 62.1 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 52/166 (31%), Gaps = 6/166 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + ++AG+P+ A+ ++ Q + +R+ ++ G SL ESIS+ Sbjct: 60 KDIAFFSRQMATMMKAGVPIVGALDILANGQKNPRMRTMVNQIKNDIEGGSSLYESISKH 119 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L ++ + + +K K++ A + Sbjct: 120 P-----VYFDELYRNLVRAGERAGVLETVLDTVASYKENIEALKGKIRKALFYPVAIVAV 174 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + V + + V + + Sbjct: 175 ALIVSSILLIYVVPQFEDVFKGFGAELPAFTQMIVNFSNFMQRWWW 220 Score = 37.0 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 16/136 (11%), Positives = 44/136 (32%), Gaps = 5/136 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + RAG+P+ +A+ ++ G + + + + +S+ SI+ Sbjct: 263 NSALARFSRTTAVTFRAGVPLVEALGIVAGATGN---KVYSDAVFRMRDDVSVGYSINMS 319 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 +R + + ++ + G L L ++ + + +E +I Sbjct: 320 MRQVGI--FPHMVVQMASIGEEAGALDAMLFKVAEYYEQEVSNAVDGLSSLLEPLIMVFI 377 Query: 133 IGSLPFCVSTLVYFTS 148 + V + Sbjct: 378 GVIVGGMVIAMYLPIF 393 >gi|283781405|ref|YP_003372160.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283439858|gb|ADB18300.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 398 Score = 62.1 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 54/183 (29%), Gaps = 21/183 (11%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D A + V G+ +S A+ I + ++ + G S +++R Sbjct: 61 DIIYATSQLAVMVETGITLSTALDSIASHEQHPTLKRVLLDLKRHVESGDDFSSALARHP 120 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 ++ + S+ G E L ++ LR + + KV A + Sbjct: 121 QH-----FDRTYVSLIRASEQTGTTGEMLDTVALYLRSQLETRQKVMAALAYPAVMLAVA 175 Query: 134 GSLPFCVSTLVYFTS-----------PGYMNVLINDPRGHM----LLGVAAAFMLIGIMV 178 ++ + T + P ++ + L A +IG Sbjct: 176 VAVTIFLLTYILPKFEPLFSRKGVKLPSITVAMMTMSDLMIDYWYLWLAATLAAVIGYFW 235 Query: 179 MRL 181 R Sbjct: 236 GRR 238 Score = 40.9 bits (94), Expect = 0.081, Method: Composition-based stats. Identities = 16/135 (11%), Positives = 40/135 (29%), Gaps = 7/135 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMV 73 ++ + V +G+ + DA+ + SS+ + +V++ G + ++ Sbjct: 264 ALSRSIRTLGTMVASGVSMLDAIRITSEVSSNYYFERAWLKVLDAVTEGNRICHALEGDP 323 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + P + + G L L +S K +E + Sbjct: 324 LFPP------TLVQMISAGEDTGKLDSVLQRVSSYYDKEVETSLKATTSLIEPLMITGMG 377 Query: 134 GSLPFCVSTLVYFTS 148 + L+ Sbjct: 378 VVVGGIALGLLMPIF 392 >gi|237729402|ref|ZP_04559883.1| type IV pilin biogenesis protein [Citrobacter sp. 30_2] gi|226909131|gb|EEH95049.1| type IV pilin biogenesis protein [Citrobacter sp. 30_2] Length = 400 Score = 62.1 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 17/163 (10%), Positives = 42/163 (25%), Gaps = 6/163 (3%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S +A++ Q R + Sbjct: 61 AETIHQLATLLKAGLTLSTGLALLAEQHPSTQWQALLRTLAYDMEQG----ITLSASLSQ 116 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + +L G L + L+ + ++ + KV+ + + Sbjct: 117 WQHVFPPLYQAMIRTGELTGKLDDCCFELAYQQKKQQQLADKVKKALRYPIIIITMAVMV 176 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIM 177 F + V ++ +A G + Sbjct: 177 VFAMLQFVLPEFAAIYQTFNTPLPALTQWIITIAHCSSQWGWL 219 >gi|117929188|ref|YP_873739.1| putative integral membrane protein [Acidothermus cellulolyticus 11B] gi|117649651|gb|ABK53753.1| putative integral membrane protein [Acidothermus cellulolyticus 11B] Length = 272 Score = 62.1 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 27/188 (14%), Positives = 64/188 (34%), Gaps = 6/188 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + + ++ + + +R+G +DA+A G+ P + I Sbjct: 73 RRVQRQLRRTVKAELVRFGHVWAAQLRSGRVPADALAAAAGEMHHPALARLFVAIADAAR 132 Query: 62 GLSLSESISRMVRY------MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + V PL +++ ++ + + G L+ + + ++ ++ Sbjct: 133 HGDIDRVTELFVTPTAKIGGPPLADLARYAPCWRIGVESGAGLARLVERTANAIQADVDL 192 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 +VQ +A+ ++G+LP L P G L A A + G Sbjct: 193 HQEVQTALAAPRATIRLLGALPIAGLLFGTVIGVASWQFLFRHPLGLACLSAAVALEVGG 252 Query: 176 IMVMRLMI 183 ++ R + Sbjct: 253 LLWCRRIA 260 >gi|191166327|ref|ZP_03028159.1| type IV pilus assembly protein PilC [Escherichia coli B7A] gi|293476765|ref|ZP_06665173.1| protein transporter HofC [Escherichia coli B088] gi|300816142|ref|ZP_07096365.1| type II secretion system F domain protein [Escherichia coli MS 107-1] gi|309796094|ref|ZP_07690506.1| type II secretion system F domain protein [Escherichia coli MS 145-7] gi|190903578|gb|EDV63295.1| type IV pilus assembly protein PilC [Escherichia coli B7A] gi|291321218|gb|EFE60660.1| protein transporter HofC [Escherichia coli B088] gi|300531349|gb|EFK52411.1| type II secretion system F domain protein [Escherichia coli MS 107-1] gi|308120336|gb|EFO57598.1| type II secretion system F domain protein [Escherichia coli MS 145-7] gi|320200377|gb|EFW74963.1| Type IV fimbrial assembly protein PilC [Escherichia coli EC4100B] gi|323171268|gb|EFZ56916.1| bacterial type II secretion system protein F domain protein [Escherichia coli LT-68] Length = 400 Score = 62.1 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 55/182 (30%), Gaps = 22/182 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTEKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + G +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGFLLAIANKLLM 235 Query: 180 RL 181 R Sbjct: 236 RR 237 >gi|325066926|ref|ZP_08125599.1| type II secretion system protein [Actinomyces oris K20] Length = 283 Score = 62.1 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 1/132 (0%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + +P A+D +V VRAG+ + +A+ + + + VR +FR S+ R+ Sbjct: 105 EVWPEAVDTLVSGVRAGMSLPEALTNLGERGPEAVRPQFRAFATDYAASARFDSSLDRLK 164 Query: 74 RYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G +L L +LS++LR+ + +++A A + Sbjct: 165 TRFADPVADRIVEALRLAHEVGGTDLGTLLRSLSQMLREDMRTRGELEARQSWTVNGAKV 224 Query: 133 IGSLPFCVSTLV 144 + P+ V L+ Sbjct: 225 AVAAPWLVLALL 236 >gi|312883313|ref|ZP_07743039.1| putative Flp pilus assembly protein TadC [Vibrio caribbenthicus ATCC BAA-2122] gi|309368929|gb|EFP96455.1| putative Flp pilus assembly protein TadC [Vibrio caribbenthicus ATCC BAA-2122] Length = 288 Score = 62.1 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 59/155 (38%), Gaps = 4/155 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--TQHL 61 IK P LD++ V G+ + ++ + + R R V + Sbjct: 136 RIKSNIKNISSRLPFLLDLMNVCVHTGMTIESSLEYLAKELQMVDRQLARVVTLTVERAK 195 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + L +++ +P E + Q G ++ L+ LS+ +R+ M + + Sbjct: 196 IVGLDKALQEFYDLVPTSESQSMVMTLVQSLQFGSSVGAVLSTLSKDIRELNMMDIEEKI 255 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 M AK + ++ + + L+ +P M V+I Sbjct: 256 GKMGAKMTMPLVVFIMIPMLVLI--VAPKVMRVMI 288 >gi|254424300|ref|ZP_05038018.1| Bacterial type II secretion system protein F domain [Synechococcus sp. PCC 7335] gi|196191789|gb|EDX86753.1| Bacterial type II secretion system protein F domain [Synechococcus sp. PCC 7335] Length = 406 Score = 62.1 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 21/168 (12%), Positives = 59/168 (35%), Gaps = 6/168 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 V +G+ + + ++ Q +P ++ G SLSES+ + Sbjct: 70 FSRQFAALVSSGVALVRGIGILSDQCPNPKLKIALMQINSDVQQGTSLSESMRKHPDS-- 127 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++GG L E L L+++L D ++ ++++ ++ ++ Sbjct: 128 ---FDDLYVSMVQAGEVGGVLDEVLNRLAKLLEDLNRLQNQIKSAMAYPVTVGFLAVAIF 184 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 ++ + L + + + + +L ++ +I Sbjct: 185 VGLTVFLLPIFAEIFVDLGAELPIFTRVLMGISKLLRTWYLVIGLIGI 232 Score = 41.3 bits (95), Expect = 0.069, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 36/130 (27%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 R+G+P+ A+ ++ S + V + Q S + + Sbjct: 275 FCRTFGSLSRSGVPILTALEIVRDTSGNQV--IANAINAAQVEIQSGGMISPALAEHGVF 332 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G L + L ++ D K ME + G + Sbjct: 333 PV---MAIQMIAIGEETGELDQMLMKVADFYEDEVEQAVKALTSIMEPIMIVVLGGMVGS 389 Query: 139 CVSTLVYFTS 148 + + Sbjct: 390 ILVAMYLPMF 399 >gi|303241938|ref|ZP_07328431.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] gi|302590493|gb|EFL60248.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] Length = 289 Score = 62.1 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 66/155 (42%), Gaps = 2/155 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K + KR ++++ + +AGL +A+ I ++ + E +R+ + + Sbjct: 131 IKRKVDKRKDILNATILYYVELLSTACQAGLNTENAIERIADNTNSILADEIKRIWKESY 190 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + E+I M++ EV F + ++G +++ L + +R +R R + + Sbjct: 191 KTKTREEAIQDMIQRCGTNEVRLFMESVGQGLEMGTPVTDILKDQARSIRSRAKSEIVKK 250 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + K +I L V L+ +P + ++ Sbjct: 251 GELAKVKIVFPMILFLLPSV--LLVALTPALITLM 283 >gi|225375136|ref|ZP_03752357.1| hypothetical protein ROSEINA2194_00760 [Roseburia inulinivorans DSM 16841] gi|225213010|gb|EEG95364.1| hypothetical protein ROSEINA2194_00760 [Roseburia inulinivorans DSM 16841] Length = 220 Score = 62.1 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 63/166 (37%), Gaps = 10/166 (6%) Query: 1 MKHLIKKRTAK----FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRS 50 ++ KKR + L F +A+ + +++AG + +A + Sbjct: 49 IQREKKKRREQQKETLLLQFRDAMQSVAAALQAGYSMENAWRESEKEMTELYGQDGIFVG 108 Query: 51 EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 E ++ + + + + + +++ FS V + GG+ + +A + Sbjct: 109 ELHQINQAVGMNQPIEKLLYEFALRSDCEDIQNFSDVFLFAKRSGGDFHKIIATTIEHIS 168 Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 D+ ++ +VQ + K I+ +P + + TS + ++ Sbjct: 169 DKIEVEREVQTVISAKKMEQKIMNVIPVFIILYLNLTSGEFFGTIV 214 >gi|322834404|ref|YP_004214431.1| Type II secretion system F domain protein [Rahnella sp. Y9602] gi|321169605|gb|ADW75304.1| Type II secretion system F domain protein [Rahnella sp. Y9602] Length = 406 Score = 62.1 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 60/184 (32%), Gaps = 9/184 (4%) Query: 1 MKHLIKKRT-AKF--LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57 +K +K+R +F + + + ++AGLP+ +++ ++ + P + Sbjct: 50 LKIRMKQRLGRRFWKNQERVAFVRQLATLLQAGLPLVNSLTLLANEHPKPAW----HCVL 105 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + I +L G L + L+ + +++ Sbjct: 106 SNVAKGVREGKPLSVTLNHYPDVFPDIYRQIISIGELTGQLDKCCLQLATQQEQQAELRS 165 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIG 175 KV+ + I + + TLV + ML+ + A + G Sbjct: 166 KVKKALRYPLIVSVIAIVVTLLMLTLVLPEFAKIYASFDAELPWFTRMLVIASGALISTG 225 Query: 176 IMVM 179 ++ Sbjct: 226 PWLV 229 Score = 41.6 bits (96), Expect = 0.043, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 45/134 (33%), Gaps = 7/134 (5%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74 + + +AG+ + +A S+ ++ ++ E G L ++ + Sbjct: 272 LSQIFQTLAMTQQAGMTLIAGLAAASASMSNLHFQAALNQIREQIMQGTPLHKAFVQSPL 331 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + G+L E L L+ + D+ N A+ + ++E A + Sbjct: 332 ------FPTLCHQLIKIGEESGSLDELLLKLAYLHHDKANSLAETLSQTIEPVLMAVMGV 385 Query: 135 SLPFCVSTLVYFTS 148 + V + Sbjct: 386 IVGGLVIAMYLPIF 399 >gi|300813874|ref|ZP_07094179.1| type II secretion system F domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512061|gb|EFK39256.1| type II secretion system F domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 389 Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 15/149 (10%), Positives = 55/149 (36%), Gaps = 6/149 (4%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +++G+ + +A+ ++ ++ R+ ++ + H G+SLS+++++ ++ Sbjct: 67 QLALILKSGIVLEEALKIVADNFNEKKRNILLKISQDLHSGISLSQAMAQSKKFTD---- 122 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F + + NL + L+ + + ++ + + + + + Sbjct: 123 --FIVSLVDVGENSSNLEQVFRKLASFYKREEKLRKNIYSTLTYPIILIIVSALVVNFLM 180 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 V T + L + + Sbjct: 181 LNVIPTFADIYDQAGESLPLMTRLLIGFS 209 >gi|282883324|ref|ZP_06291918.1| putative type II secretion system protein F [Peptoniphilus lacrimalis 315-B] gi|281296828|gb|EFA89330.1| putative type II secretion system protein F [Peptoniphilus lacrimalis 315-B] Length = 389 Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 15/149 (10%), Positives = 55/149 (36%), Gaps = 6/149 (4%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +++G+ + +A+ ++ ++ R+ ++ + H G+SLS+++++ ++ Sbjct: 67 QLALILKSGIVLEEALKIVADNFNEKKRNILLKISQDLHSGISLSQAMAQSKKFTD---- 122 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F + + NL + L+ + + ++ + + + + + Sbjct: 123 --FIVSLVDVGENSSNLEQVFRKLASFYKREEKLRKNIYSTLTYPIILIIVSALVVNFLM 180 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 V T + L + + Sbjct: 181 LNVIPTFADIYDQAGESLPLMTRLLIGFS 209 >gi|21244268|ref|NP_643850.1| general secretion pathway protein F [Xanthomonas axonopodis pv. citri str. 306] gi|21109914|gb|AAM38386.1| general secretion pathway protein F [Xanthomonas axonopodis pv. citri str. 306] Length = 391 Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 19/183 (10%), Positives = 56/183 (30%), Gaps = 5/183 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ L++K+ + + AG P+ A+++++ E R + Sbjct: 40 LRMLLRKKPFD-NAALVQFTQQLATLIGAGQPLDRALSILMD----LPEDEKSRRVIGDV 94 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + S + + GG++ + L L+ L + ++ KV Sbjct: 95 RDTVRGGAPLSSALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKVI 154 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + ++G + V L ++ ++ ++ Sbjct: 155 NALIYPAILLAVVGCALLFLLGYVVPQFAQMYESLDVALPWFTQAVLSVGLLVRDWWIVL 214 Query: 181 LMI 183 +++ Sbjct: 215 IVV 217 >gi|309802104|ref|ZP_07696214.1| conserved hypothetical protein [Bifidobacterium dentium JCVIHMP022] gi|308221305|gb|EFO77607.1| conserved hypothetical protein [Bifidobacterium dentium JCVIHMP022] Length = 249 Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 59/165 (35%), Gaps = 5/165 (3%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + SVR+G + A + G + R+ E +M R Sbjct: 86 VAALQASVRSGATLVQAFEELGGCAFATPELTRSRIEMVLRCRCPPEEQGEQMRRL---- 141 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + LG S LA + L+ ++ + + +A+ ++ +LP Sbjct: 142 -SAELYAACQLSMALGCETSRCLAAVLASLKRQRLLNDLRRNAFAMPQATVKLLMALPLL 200 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + L D RG + LG A IG++ +R+++ Sbjct: 201 TVLLGEGMGARPLAFLCGDARGLLCLGFALGCYAIGLLWIRVLLR 245 >gi|91787227|ref|YP_548179.1| general secretion pathway protein F [Polaromonas sp. JS666] gi|91696452|gb|ABE43281.1| General secretion pathway protein F [Polaromonas sp. JS666] Length = 410 Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 7/161 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + V +GLP+ A+ + ++ D + + + G + Sbjct: 70 TANLTIWTRQLAGLVSSGLPLERALTALTDEAEDEKQRNLVAALRAEVNGG----ASFAR 125 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 E S + + G L L L+ L +R+ +KAK+ ++ + Sbjct: 126 ALSHHPGEFSAIYIAVIGAGEQTGYLGLVLERLADDLEERQTLKAKLIGAALYPA---IV 182 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 V LV + P +V R L VA + Sbjct: 183 TLVAIVIVMFLVGYVVPQVASVFAGTKRALPFLTVAMLAIS 223 Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 40/130 (30%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ S+ + G L+ ++++ R+ Sbjct: 279 FASTLAMLAGAGVPILKALQAAAETLSNRAMRADALDALLLVREGAPLASALAQKKRFPG 338 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + + G L L + L + +A A +E + + Sbjct: 339 ------LVSMFARLGEQTGQLPVMLQRAALQLSNEVQRRAMALATILEPLLIVAMGLVVM 392 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 393 LIVLAVLLPI 402 >gi|312882864|ref|ZP_07742596.1| general secretion pathway protein F [Vibrio caribbenthicus ATCC BAA-2122] gi|309369383|gb|EFP96903.1| general secretion pathway protein F [Vibrio caribbenthicus ATCC BAA-2122] Length = 408 Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 22/160 (13%), Positives = 56/160 (35%), Gaps = 6/160 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + V++G+P+ + + + QS +R+ V G +L++S++ Sbjct: 69 DLALITRQLSTLVQSGMPLEECLKAVSEQSEKPRIRTMLLAVRSKVTEGYTLADSLADFP 128 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G+L L L+ +R+ M++K+Q + Sbjct: 129 -----HVFDELFRSMVAAGEKSGHLDAVLERLADYAENRQKMRSKLQQAMIYPIVLVVFA 183 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + + V G + + + ++A+ + Sbjct: 184 VGIVAFLLAAVVPKIVGQFIQMGQELPQSTQILLSASDFI 223 >gi|238797693|ref|ZP_04641188.1| Type II secretion system protein [Yersinia mollaretii ATCC 43969] gi|238718445|gb|EEQ10266.1| Type II secretion system protein [Yersinia mollaretii ATCC 43969] Length = 365 Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 55/184 (29%), Gaps = 21/184 (11%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + + ++AGLP+ +++ ++ + P R + + + G SLSE+++ Sbjct: 25 ERLIVVTRQLATLLQAGLPLVNSLQLLAKEMDALPWRCLLQEINQQVSQGQSLSEAMAHY 84 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R P + +L GNL + L ++ ++ KV I Sbjct: 85 PRIFPQLYPP-----VIAMGELTGNLEQCCIQLVEHQERQQKLQKKVVKALKYPVFVCII 139 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGH---------------MLLGVAAAFMLIGIM 177 + + +V + + + G + Sbjct: 140 ALVVSVVMLVMVLPEFAQIYQSFDTPLPALTASLLSISAFLTDYGPCIAIVLISLCSGYL 199 Query: 178 VMRL 181 R Sbjct: 200 YARR 203 >gi|332982952|ref|YP_004464393.1| Type II secretion system F domain-containing protein [Mahella australiensis 50-1 BON] gi|332700630|gb|AEE97571.1| Type II secretion system F domain protein [Mahella australiensis 50-1 BON] Length = 301 Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 66/184 (35%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + R K F + +RA + A+ + + P++ I Sbjct: 113 LDNRRSNRIYKLEQQFGAFTRDVSVYLRANPNLYRAIESVTEYAGQPLKQYLDAFIRRVE 172 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + ES+ + + +S + I ++++ + + + + + Sbjct: 173 SGEPIDESLKQFKTETNIDSISEWVDSIIFARMAKSDITDVCDHSADRINRKLVRGMNIH 232 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+ + K +A+ + L + +S +++++ G M+L A + I ++ Sbjct: 233 AVLSKTKGAAFAMLGLIALMVVYTILSSAETKDLILSTGTGQMILIYVIASLFITTYIIM 292 Query: 181 LMIN 184 I+ Sbjct: 293 KQID 296 >gi|254252516|ref|ZP_04945834.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158] gi|124895125|gb|EAY69005.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158] Length = 333 Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 60/158 (37%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 +K R +D+ P +D++ GL + ++ V+ + SE Sbjct: 171 VKRRAAARRQSVVDELPLLVDMLRLLQGVGLSLDQSLQVVTNDFRGMLPVLSSEVGIAQR 230 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+ R+ +++ ++ + GG + E L LR+ + Sbjct: 231 QFAAGRTREQSLQRLSGGFDNEDLRAVVRLMIQVDKHGGAVQEPLKQFGDRLRETRRAML 290 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + K + ++ +L + L+ PG + V+ Sbjct: 291 RERIGRLTVKMTGVMVLTLLPAL--LIVTAGPGMLAVM 326 >gi|84489955|ref|YP_448187.1| type II secretion protein F [Methanosphaera stadtmanae DSM 3091] gi|84373274|gb|ABC57544.1| predicted type II secretion protein F [Methanosphaera stadtmanae DSM 3091] Length = 277 Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 21/141 (14%), Positives = 55/141 (39%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 L P L + ++AG+ + DA+ + + + EF+ + G + E+ Sbjct: 101 ILKVIPYVLRELSIELKAGIGLFDAIEEVSNGNYGQLSKEFKITLNEIKYGTNYIEAFEN 160 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + L + + ++ GGNL++ L L+ +K K + + + + Sbjct: 161 LSKRINLPIMEKIVSHMNRTIINGGNLADTLNILANENSRNMQIKYKEYSEKLNSLMILY 220 Query: 132 IIGSLPFCVSTLVYFTSPGYM 152 + ++ V + + + Sbjct: 221 MFTTVVIPVILFIMIIAATTV 241 >gi|253580448|ref|ZP_04857713.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848178|gb|EES76143.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 348 Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 8/156 (5%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-------GQSSDPVRSEFRRVIET 58 +KR + L D+P + V+AG+ V A I ++ P E R V Sbjct: 191 QKRYEELLMDYPGLIMKFTLLVQAGMTVRKAFQKISLDYGRKRKRNPRPAYEEIRIVCYE 250 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKA 117 G+S SE+ R + F+T++ + +++ L S + + KA Sbjct: 251 MESGVSESEAYRRFGERCGQAKYKTFATLLIQNLQKGSRQMADMLERESTEAWEERKRKA 310 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153 +V + K +I L ++ ++ + Sbjct: 311 RVLGEAAATKLLVPMIMMLIVVMAIVMIPAFMSFYG 346 >gi|302392522|ref|YP_003828342.1| type II secretion system F domain protein [Acetohalobium arabaticum DSM 5501] gi|302204599|gb|ADL13277.1| Type II secretion system F domain protein [Acetohalobium arabaticum DSM 5501] Length = 403 Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 20/155 (12%), Positives = 46/155 (29%), Gaps = 4/155 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +K+ L D + AG+ + A+ ++ Q+ +P E R ++ Sbjct: 52 LGDKLKQFKKVKLKDLALFCRQFATMIDAGVSLVRALDILGDQTGNPKLREAIRSVQEHV 111 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + + GG L E L ++ MK ++ Sbjct: 112 EGG----VSLSNALEEEDHVFPRLFISMVEAGETGGILDEVLLEMADHFEKENEMKQQIT 167 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + + T++ T + Sbjct: 168 SALAYPAVITLVAVGVVVFLVTVILPTFVDIFAGM 202 >gi|297627360|ref|YP_003689123.1| hypothetical protein PFREUD_22090 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296923125|emb|CBL57712.1| Hypothetical membrane protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 297 Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 60/165 (36%), Gaps = 2/165 (1%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + +++ SV G V DA+ Q + +R+ +I S + ++ M + Sbjct: 109 WVRLLIGSVSTGKSVPDAIRATRNQVAPVLRAPVDGLIARLDARWSTASALRAMADDLAH 168 Query: 79 QEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + V + G +AL L + R R ++ + + + + Sbjct: 169 PDADAIIAALIVATRRGGTGTGDALRALGQHSRRRLQSLREIATERAKPRIVVRQVTLIT 228 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 V V +P Y+ P G +L A L ++++R M Sbjct: 229 VVVLVGVAVFNPDYVAP-YLTPTGQLLGAGLLAAYLGSLVMLRRM 272 >gi|262172502|ref|ZP_06040180.1| type II secretory pathway component PulF [Vibrio mimicus MB-451] gi|261893578|gb|EEY39564.1| type II secretory pathway component PulF [Vibrio mimicus MB-451] Length = 408 Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 18/165 (10%), Positives = 45/165 (27%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72 + + +AG+P+ ++ + + E V G SLS Sbjct: 67 EVLVIFCRQMYSLTKAGVPLLRSMRGLTQNCHNKQLKEALESVCNELTNGRSLS-----A 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + S + + G L +AL L+ + +++ Sbjct: 122 SMQLHPGVFSPLFVSMIQVGENTGRLDQALLQLANYYEQEVETRKRIKTAMRYPTFVIIF 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + F ++ V + D + + + + Sbjct: 182 VVTAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYW 226 Score = 40.1 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 14/135 (10%), Positives = 41/135 (30%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + AG+P++ ++A+ + E R + + +S S++ + Sbjct: 269 RAQLSRFSRTFSLMLSAGVPLNQSLALSAEAIDNKFL-EQRILEMKSQIEAGVSVSVTAV 327 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 ++ + + + G + E L +S + K +E ++ Sbjct: 328 ----NVKIFTPLVIQMISVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLVFV 383 Query: 133 IGSLPFCVSTLVYFT 147 + + Sbjct: 384 AAMVLVLALGIFLPM 398 >gi|253689233|ref|YP_003018423.1| general secretion pathway protein F [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755811|gb|ACT13887.1| general secretion pathway protein F [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 408 Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 54/160 (33%), Gaps = 9/160 (5%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLS 64 +++ D + V A LP+ +A+ + QS + V G S Sbjct: 60 RRKIRISTSDLALLTRQLATLVAASLPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHS 119 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L++++ + + G+L E L L+ R+ M++++Q + Sbjct: 120 LADAMKCFP-----SSFERLYCAMVAAGETSGHLDEVLNRLADYTEQRQQMRSRIQQAMI 174 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 + VS L+ P + I+ + L Sbjct: 175 YP---CVLTVVAIAVVSILLSVVVPKVVEQFIHMKQALPL 211 >gi|154151944|ref|YP_001405562.1| type II secretion system protein [Candidatus Methanoregula boonei 6A8] gi|154000496|gb|ABS56919.1| type II secretion system protein [Methanoregula boonei 6A8] Length = 450 Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 25/190 (13%), Positives = 70/190 (36%), Gaps = 11/190 (5%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L K+ T K + + L + +R GL AV + + R + G Sbjct: 126 LQKRSTRKKEELYTEFLFKLSELMRGGLDPVKAVKELAKTDLGVLTPHIRIASTSMTFGK 185 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S ES+ M + + + ++ ++ S GG++++ + S +R +++ + + Sbjct: 186 SFEESMKAMAQSLHSDLIRRYTMLVVQASYSGGSVADLILKASEDMRSIISIEREKEGNL 245 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMN------VLINDPRGHMLLGVAAAFMLI--- 174 + + ++ + ++ + ++ + G++ M+I Sbjct: 246 HQYVMIFYFAQAIIIFIVYILTTSLLPFVEQLGATQMFGKTDIGNIDFARGFFHMIILNS 305 Query: 175 --GIMVMRLM 182 G +++ + Sbjct: 306 LFGGLIIGKI 315 >gi|90580241|ref|ZP_01236048.1| putative Type IV pilin biogenesis protein [Vibrio angustum S14] gi|90438543|gb|EAS63727.1| putative Type IV pilin biogenesis protein [Vibrio angustum S14] Length = 407 Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 23/175 (13%), Positives = 48/175 (27%), Gaps = 4/175 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 L K R +D + + +G+PV A+ ++ + R Q Sbjct: 55 SFLTKMRDQMKGEDVTAVTRQLATMIESGVPVVQALQLMASSYN----KAEMRATLLQIT 110 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 S + F + + G+L + A ++ + M+ KV Sbjct: 111 TQVESGASLSSAMRSSSPLFDKFFCDLVATGEQTGHLGQVFARIAVYREKNEAMRKKVIK 170 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + + + V + + + V A+ LI Sbjct: 171 AMIYPAMVTLTAVLVTVLMLVFVIPQFAQIFSSFGAELPLFTQIVVHASDFLIAY 225 >gi|58580471|ref|YP_199487.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae KACC10331] gi|188578592|ref|YP_001915521.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae PXO99A] gi|58425065|gb|AAW74102.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae KACC10331] gi|188523044|gb|ACD60989.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae PXO99A] Length = 405 Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 19/183 (10%), Positives = 56/183 (30%), Gaps = 5/183 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ L++K+ + + AG P+ A+++++ E R + Sbjct: 54 LRMLLRKKPFD-NAALVQFTQQLATLIGAGQPLDRALSILMD----LPEDEKSRRVIGDV 108 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + S + + GG++ + L L+ L + ++ KV Sbjct: 109 RDTVRGGAPLSSALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKVI 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + ++G + V L ++ ++ ++ Sbjct: 169 NALIYPAILLAVVGCALLFLLGYVVPQFAQMYESLDVALPWFTQAVLSVGLLVRDWWLVL 228 Query: 181 LMI 183 +++ Sbjct: 229 IVV 231 >gi|134298887|ref|YP_001112383.1| type II secretion system protein [Desulfotomaculum reducens MI-1] gi|134051587|gb|ABO49558.1| type II secretion system protein [Desulfotomaculum reducens MI-1] Length = 401 Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 53/166 (31%), Gaps = 6/166 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 + +G+P+ ++ ++ Q+ + ++ + E G SL +++S Sbjct: 63 KELALFCRQFATLSSSGVPIVQSLYLLKEQTGNKALKGALEAIAEDLQGGKSLGQALSS- 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + S F + ++ G+L L L+ ++ K + + Sbjct: 122 ----HHKIFSAFFINMVEAGEMSGSLDHVLDRLADYFERAYELREKFKTAITYPAFIMSM 177 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 CV V T + L + + + L G V Sbjct: 178 AICTIGCVFIFVLPTFAQIIIELQAPISLPTAIVIQISEWLKGNWV 223 >gi|51246634|ref|YP_066518.1| type 4 fimbrial assembly protein (PilC) [Desulfotalea psychrophila LSv54] gi|50877671|emb|CAG37511.1| probable type 4 fimbrial assembly protein (PilC) [Desulfotalea psychrophila LSv54] Length = 401 Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 22/171 (12%), Positives = 54/171 (31%), Gaps = 6/171 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 D ++ + AGLP+ + ++ Q +P + ++ G +L++S+ + Sbjct: 63 KDIVIFTRMLSTMIDAGLPLVQGIEILEQQQENPTFKKAIGKIKGDVESGTTLADSMRKH 122 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + T + + GG L L L+ + +K K++ I Sbjct: 123 PKI-----FDKLFTNMIEAGETGGILDTILQRLAAFMEKSMALKKKIKGAMTYPTICLAI 177 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + V + + V + ++ L+ Sbjct: 178 SILILIIILVFVVPVFSQMFADFGSSLPLPTQIVVNMSDFFKNNIIYMLIA 228 Score = 43.2 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 15/131 (11%), Positives = 41/131 (31%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77 + +++G+P+ +A+ V+ + + + RV + G ++E + Sbjct: 271 FTRTLSTMLQSGVPILEALQVVAKTAGNKIIERAVFRVADGIAEGRPMAEPLEESG---- 326 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 T + + G L L ++ + +E ++ G + Sbjct: 327 --VFPNMVTQMINVGESVGALDAMLEKIADFYDGEVDQAVDNLTAMIEPFMMVFLGGMIG 384 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 385 GLVVAMYLPIF 395 >gi|312127122|ref|YP_003991996.1| Type II secretion system F domain-containing protein [Caldicellulosiruptor hydrothermalis 108] gi|311777141|gb|ADQ06627.1| Type II secretion system F domain protein [Caldicellulosiruptor hydrothermalis 108] Length = 403 Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 49/174 (28%), Gaps = 8/174 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQ 59 + +KKR + + + AG+ V + + V+ Q+ + E Sbjct: 52 INLRVKKRIS--TKELFIFCRQFATMLMAGISVLNCLDVLRTQNRGKYFGKVLNDLYEEV 109 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G LS ++ P + +L G+L A+ ++ +K K+ Sbjct: 110 SKGNPLSSAMHEHRDIFP-----SILIHMVEAGELSGSLDTAMDKMAIHFEKEMKLKQKI 164 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + + + + V L L + L Sbjct: 165 VNALIYPVIVISVASLVFLFLLIFVIPAFVEIFAQLNVQLPSITLFIINLGVFL 218 Score = 37.0 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 42/131 (32%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+ + A+ S+ + F VIE G LS+ IS + Sbjct: 271 FTRTLATLLGAGVNLLTALDTTKRVISNAYIEKAFEGVIERVRGGEGLSQPISEL----- 325 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + +V+ + G L L + + + E ++ + Sbjct: 326 -KIFPPLVSVMLRTGEETGRLEYMLEKAADFYENEVENQITRLTALFEPLMIIFLALMVG 384 Query: 138 FCVSTLVYFTS 148 F V +++ Sbjct: 385 FLVISIILPLF 395 >gi|320179666|gb|EFW54615.1| Type IV fimbrial assembly protein PilC [Shigella boydii ATCC 9905] gi|332095395|gb|EGJ00418.1| bacterial type II secretion system protein F domain protein [Shigella boydii 5216-82] Length = 400 Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 55/182 (30%), Gaps = 22/182 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + G +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGKWGWLLVLFGFLLAIANKLLM 235 Query: 180 RL 181 R Sbjct: 236 RR 237 >gi|218555534|ref|YP_002388447.1| General secretion pathway protein F [Escherichia coli IAI1] gi|218362302|emb|CAQ99923.1| General secretion pathway protein F [Escherichia coli IAI1] gi|323183548|gb|EFZ68945.1| general secretion pathway protein F [Escherichia coli 1357] Length = 407 Score = 61.7 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + L+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHSLPASTRTLIAMSDALQASGVYW 229 >gi|292656513|ref|YP_003536410.1| type IV pilus biogenesis complex membrane subunit [Haloferax volcanii DS2] gi|291371605|gb|ADE03832.1| type IV pilus biogenesis complex membrane subunit [Haloferax volcanii DS2] Length = 708 Score = 61.7 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 20/140 (14%), Positives = 58/140 (41%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 FP+ L+++ + + G+ + +++A++ S+ + E R + ++ Sbjct: 497 FPDTLNLLSSANQMGISLVESLALVSRWSTGALADELRALRNDIRWNHDAHAALMAFATR 556 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + ++S +I+ + G+LS L+ + R+R ++ + A I Sbjct: 557 LNVPQLSRVIRLIASGGRTSGDLSRVLSVAAEDTRNRYKLEKSRRRAMGSYIAIVVIGYF 616 Query: 136 LPFCVSTLVYFTSPGYMNVL 155 + V ++ + G + + Sbjct: 617 VYLFVILMIGASYLGPLAEM 636 Score = 55.9 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 19/180 (10%), Positives = 53/180 (29%), Gaps = 4/180 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 K + R P+A+ + G+ + + + V EF + Sbjct: 156 KSRAEMRGRSIDILLPHAIVYMYALSHGGMSFLEVIRSVADAPDYGEVSREFEMIARDMD 215 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 L L ++ P F + GG+++ L S + + + Sbjct: 216 LFGNDLFTALRNSRNLTPSINFEQFLDDLLSVLDSGGDVTAFLDRESATYLEEARDEQED 275 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ + ++ + + +V ++ + L + +G+ ++ Sbjct: 276 FIETLSMLSEVFVAAFVAAPLLLIVTLMVISFLG--GDTLVQLYALNYLIFPLGMGLFLL 333 >gi|134298693|ref|YP_001112189.1| hypothetical protein Dred_0826 [Desulfotomaculum reducens MI-1] gi|134051393|gb|ABO49364.1| hypothetical protein Dred_0826 [Desulfotomaculum reducens MI-1] Length = 334 Score = 61.7 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 70/171 (40%), Gaps = 1/171 (0%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 ++ +K+ + P+A+ +I + + A+ +V +S +P RS FRRV+E + G Sbjct: 155 QKRSKYTEQIPSAIRVISTVLEDTNDFTRALENVVERSPEPTRSLFRRVLERLNHGEQRK 214 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + + + M + V+ + G L+ ++ + L + + Sbjct: 215 KVFGLIPKAMGTGHSIMLANVLEEGYRHGVAALPMFNTLASQFDTMHKLELNNKVLLIPS 274 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + S+ ++ + L P M + ++ G L+ + M+I I+ Sbjct: 275 RFSSVLLHIGVVALVLLSTRLVPDAMKYITDN-IGKSLVVLCFVSMIINIV 324 >gi|332671124|ref|YP_004454132.1| Type II secretion system F domain-containing protein [Cellulomonas fimi ATCC 484] gi|332340162|gb|AEE46745.1| Type II secretion system F domain protein [Cellulomonas fimi ATCC 484] Length = 310 Score = 61.7 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 64/156 (41%), Gaps = 6/156 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + +R ++ L + P +++ +V AG + A+ +V + + +E R + Sbjct: 155 LGRQVAQRESRMLQEMPTVAELLALAVGAGEGATGALERVVRSTRGELTAELERTLADAR 214 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L+ ++ + L ++ F+ ++V + G L+E L ++ +R+ +V+ Sbjct: 215 AGAPLTAALDGLADRTGLAALARFAEGVAVAVERGTPLAEVLRAQAQDVRE------EVR 268 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 ME + +P L + L+ Sbjct: 269 RDLMETGGRKEVAMMVPVVFLILPVTVAFAVFPSLL 304 >gi|257875283|ref|ZP_05654936.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] gi|257809449|gb|EEV38269.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] Length = 403 Score = 61.7 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 21/182 (11%), Positives = 51/182 (28%), Gaps = 21/182 (11%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVR 74 L + +G+ + DA ++ Q + + V + G LSE+ Sbjct: 65 LVGYLRQFSTLIASGITIVDASRMLEEQQKNPNFKKILGEVRDEIDSGRPLSEAYKDHPN 124 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 P T + S++ G+L L +++ ++ + + + Sbjct: 125 AFP-----TLLTSVIAVSEMSGSLEGNLKDMADYYEKSAENRSGIVTAMVYPIILVILTF 179 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGH---------------MLLGVAAAFMLIGIMVM 179 + + ++ D +L V +G+ + Sbjct: 180 IVGIILLVMIVPMFVEVFEGFDADLPTITVATMAISEFLQTRGWVLAVLIVGFFVGLWIA 239 Query: 180 RL 181 R Sbjct: 240 RR 241 Score = 35.1 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 18/136 (13%), Positives = 43/136 (31%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + F + + + + + + A+ + S+ ++ G +S+ Sbjct: 266 NSFSLFMTTMSTLLSSSVGMVTALNMSRDVVSNKYIKRIIDNCAFQIEEGGKMSDVFR-- 323 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 V T + + G+L + L LS I + + +K ME I Sbjct: 324 ----GNMMVPMLVTQMVEIGESTGSLEDMLKRLSIIYQKEVDETSKRLKTIMEPIVILII 379 Query: 133 IGSLPFCVSTLVYFTS 148 + V+ ++ Sbjct: 380 CVIVGLIVAAIMIPMF 395 >gi|241667100|ref|YP_002985184.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862557|gb|ACS60222.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 300 Score = 61.7 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 66/153 (43%), Gaps = 4/153 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLG 62 + R + +FP LD++V + +A + +++ + + V E + ++ LG Sbjct: 146 KAQDRKERISREFPYFLDLVVMTQQAQATLPESLRLYAEAAPGTVMSEEIEQTLKDVALG 205 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + E++ R+ R M +EV + G N E L +R LR R + + Sbjct: 206 TGMIEALQRLERRMTAEEVIRVIRAVIQGEVEGSNRVELLREHARDLRFR---RWEKADR 262 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + E + ++ ++ VS L+ +P + ++ Sbjct: 263 ASEKLKAKIVMPAMMIVVSILLLVLAPAIVEMM 295 >gi|84622429|ref|YP_449801.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366369|dbj|BAE67527.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 405 Score = 61.7 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 19/183 (10%), Positives = 56/183 (30%), Gaps = 5/183 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ L++K+ + + AG P+ A+++++ E R + Sbjct: 54 LRMLLRKKPFD-NAALVQFTQQLATLIGAGQPLDRALSILMD----LPEDEKSRRVIGDV 108 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + S + + GG++ + L L+ L + ++ KV Sbjct: 109 RDTVRGGAPLSSALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRDKVI 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + ++G + V L ++ ++ ++ Sbjct: 169 NALIYPAILLAVVGCALLFLLGYVVPQFAQMYESLDVALPWFTQAVLSVGLLVRDWWLVL 228 Query: 181 LMI 183 +++ Sbjct: 229 IVV 231 >gi|29826726|ref|NP_821360.1| integral membrane protein [Streptomyces avermitilis MA-4680] gi|29603822|dbj|BAC67895.1| putative integral membrane protein [Streptomyces avermitilis MA-4680] Length = 309 Score = 61.7 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 63/185 (34%), Gaps = 4/185 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + ++R + + +R G+ + A+ + D + + + + LG Sbjct: 98 QMAQERIGQLE-ALSEWTQRLAGLLRLGMGLEQAMITSRQGAPDELAPQIVNLSDRLRLG 156 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQA 121 ++ + + + G L++AL +L+ +RD K ++A Sbjct: 157 WRPDGALRAFAEELNDVTADKVVAALILSVNDRGPGLAQALEDLAGTVRDEVAKKRAIEA 216 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + + + + + V F P Y + G ++L + + +MR Sbjct: 217 DRAKPRTTVRWMTVITVGVVVA-GFFVPSYTKP-YSTLLGQLVLAFLTVGFIGVLALMRQ 274 Query: 182 MINFD 186 + F Sbjct: 275 LGAFR 279 >gi|332308474|ref|YP_004436325.1| Type II secretion system F domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175803|gb|AEE25057.1| Type II secretion system F domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 405 Score = 61.7 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 22/165 (13%), Positives = 53/165 (32%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 +D + ++G+P+ +V + SS+ + V + G +LS ++ R Sbjct: 65 EDLVIFSRQMYSLTKSGIPIIRSVKGLAETSSSERMTQILNDVCDQLERGRTLSSALHRH 124 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + I + G L EA LS + + + +++A + Sbjct: 125 NKVFGQ-----LFVSIVHVGENTGRLDEAFLQLSDYMEREQETRKQIKAATRYPTFVILA 179 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + ++ V + + +A + I Sbjct: 180 VVAALVIMNIFVIPVFANMFTSFGAELPLMTRILLATSDFFITKW 224 Score = 40.5 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 15/133 (11%), Positives = 40/133 (30%), Gaps = 7/133 (5%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74 +R+G+P++ A+ ++ S+ + + ++ + G SLS + Sbjct: 270 LSRFARSFSMMLRSGVPLTAALNLVSDAVSNAFMADKIVKMRKNIEKGESLSRVANSSKM 329 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + P + + G + E L + + K +E + Sbjct: 330 FTP------LVLQMINVGEETGRVDELLGEAAEFYEREVDYDLKSLTSKIEPLLIMVVAA 383 Query: 135 SLPFCVSTLVYFT 147 + + Sbjct: 384 MVLVLALGIFTPM 396 >gi|162457503|ref|YP_001619870.1| general secretion pathway protein F [Sorangium cellulosum 'So ce 56'] gi|161168085|emb|CAN99390.1| general secretion pathway protein F [Sorangium cellulosum 'So ce 56'] Length = 408 Score = 61.7 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 21/162 (12%), Positives = 51/162 (31%), Gaps = 6/162 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P+ +++ ++ Q + ++ +V E G S ++++ P Sbjct: 74 MTRQLATLIGAGIPLFESLNALIEQVEKESLKKVLTQVREQVREGTSFAKALEAHPSVFP 133 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G L L L+ + ++ + KV A A I L Sbjct: 134 P-----LYVSMVRAGEASGTLEGVLTRLTVFMENQAKLVGKVTAALAYPALMALIGIGLI 188 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + V G + + + + + Sbjct: 189 SVLMVAVVPNVTGIFASMDQALPWYTAALIGTSAFASSYWWL 230 >gi|313679424|ref|YP_004057163.1| type II secretion system f domain [Oceanithermus profundus DSM 14977] gi|313152139|gb|ADR35990.1| Type II secretion system F domain [Oceanithermus profundus DSM 14977] Length = 399 Score = 61.7 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 57/157 (36%), Gaps = 6/157 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D ++ + AG+ + A+ + QS +R ++V G L+E++ Sbjct: 58 DLVLFMEQFATLIGAGVSLVQALHTLSLQSPHPTLRHAAQQVRSRVEGGAGLAEAMGEFP 117 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 P + ++L G+L E L ++R L D ++ K+++ + I+ Sbjct: 118 EAFPP-----IVVRMVAAAELSGSLEETLRRVARYLDDAFELQQKIRSALTYPFFAITIV 172 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + +V + G L +A + Sbjct: 173 LLAVVALLVVVVPVFQKLYAGAGAELPGITLALLAVS 209 >gi|307720783|ref|YP_003891923.1| Type II secretion system F domain-containing protein [Sulfurimonas autotrophica DSM 16294] gi|306978876|gb|ADN08911.1| Type II secretion system F domain protein [Sulfurimonas autotrophica DSM 16294] Length = 415 Score = 61.7 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 69/197 (35%), Gaps = 20/197 (10%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAV-AVIVGQSSDPVRSEFRRVIETQ 59 + ++ K++ D A+ + AG+ + D++ + + + ++ F ++ E Sbjct: 61 LSNIKKRKIKP--DALIAAIRQLAVMTNAGISIHDSLSEIASATTDEALKFVFSKIAEDI 118 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + G S+S ++ E+ + + + GNL EAL +L+ +L + + K Sbjct: 119 NAGHSISSAMQNF-----RYELGNLTIAMVELGEKTGNLDEALYSLANMLEEIRANVVKF 173 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG------------V 167 + + + + + V L L+ Sbjct: 174 KKAMAYPRNVMIAMAIAFTVLISYVVPQFKSIFEELHAQLPLPTLILLKLEYIFNNFGPY 233 Query: 168 AAAFMLIGIMVMRLMIN 184 A + I V + +IN Sbjct: 234 VLAIIAIVFFVFKYLIN 250 >gi|149189069|ref|ZP_01867357.1| MSHA biogenesis protein MshG [Vibrio shilonii AK1] gi|148837032|gb|EDL53981.1| MSHA biogenesis protein MshG [Vibrio shilonii AK1] Length = 407 Score = 61.7 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 20/165 (12%), Positives = 50/165 (30%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + +AG+P+ ++ + ++ ++ V+ G +LS + Sbjct: 66 EVLVIFCRQLFSLTKAGVPLLRSMKGLTQNCTNKQLKYALEEVVNELTNGRNLSSCMQLH 125 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R S + + G L +AL L+ + +++A Sbjct: 126 PR-----VFSPLFVSMIAVGENTGRLDQALEQLAAYYEQEVETRKRIKAAMRYPTFVLTF 180 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 I + F ++ V D + + + +G Sbjct: 181 IVAALFVLNIKVIPQFADMFARFGVDLPLPTRILITTSNFFVGYW 225 Score = 43.2 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 12/135 (8%), Positives = 35/135 (25%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 +RAG+P++ ++A+ + + ++ + Sbjct: 268 RAQLSRFSRTFALMLRAGVPLNQSLALSAEAIDNKYLE-----NRIMEMKAAIEAGSTVS 322 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G + E L +S + K +E + Sbjct: 323 STAINANIFTPLVIQMISVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLTVV 382 Query: 133 IGSLPFCVSTLVYFT 147 G + + Sbjct: 383 AGMVLILALGIFLPM 397 >gi|262198000|ref|YP_003269209.1| type II secretion system F domain protein [Haliangium ochraceum DSM 14365] gi|262081347|gb|ACY17316.1| Type II secretion system F domain protein [Haliangium ochraceum DSM 14365] Length = 403 Score = 61.7 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 48/171 (28%), Gaps = 6/171 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 D + + AGLP+ + ++ GQ+ + V G S SES+ + Sbjct: 60 SRDLLIFTRQLATMIDAGLPLVQCLDILAGQAENKAFAKVLFSVKSGLESGASFSESLRK 119 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + ++GG L L L+ + +K +V+ Sbjct: 120 HPK-----VFDQLYINLVAAGEVGGILDTILLRLTAYIEKAVKLKRQVKGALTYPIGILV 174 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 I + + V + + V + + Sbjct: 175 IALGVVAVMLGKVIPSFQEMYSSFEGAALPEPTQVVIGISESFRDLWFVWL 225 Score = 38.6 bits (88), Expect = 0.38, Method: Composition-based stats. Identities = 8/130 (6%), Positives = 36/130 (27%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+ + DA+ + + + V + + + P Sbjct: 270 FTRTLGTLLTSGVAILDALDICSRTAGNRVVQAAIEKVRQAVSEGKDLAAPLGASKVFP- 328 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G + + L ++ + ++ ++E ++ + Sbjct: 329 ----SMVVEMISVGEQTGTMDQMLQKIADFYEEEVDVAVAAMTKAIEPLLMGFLGVVVGG 384 Query: 139 CVSTLVYFTS 148 + + Sbjct: 385 LLIAMYLPVF 394 >gi|163802238|ref|ZP_02196133.1| general secretion pathway protein F [Vibrio sp. AND4] gi|159174043|gb|EDP58853.1| general secretion pathway protein F [Vibrio sp. AND4] Length = 406 Score = 61.7 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 56/169 (33%), Gaps = 8/169 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 + + V++G+P+ + + + Q+ +RS V G L +S+ Sbjct: 65 TAELALITRQLSTLVQSGMPLEECLKAVSEQAEKPRIRSMIAAVRSKVTEGYPLGDSLGD 124 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + G+L L L+ + +R+ M++K+ + Sbjct: 125 YP-----HVFDELYLSMVAAGEKSGHLDAVLERLADYVENRQKMRSKLLQAMIYPVVLVV 179 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMV 178 + + + V + + + MLL + G+++ Sbjct: 180 FAVGIVTLLLSSVVPKIIEPIIQMGQELPQSTQMLLSASEFVQEWGLII 228 >gi|76802194|ref|YP_327202.1| transmembrane protein (type II secretion system proteins TadC) [Natronomonas pharaonis DSM 2160] gi|76558059|emb|CAI49645.1| transmembrane protein (homolog 1 to type II secretion system proteins TadC) [Natronomonas pharaonis DSM 2160] Length = 672 Score = 61.7 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 21/166 (12%), Positives = 55/166 (33%), Gaps = 6/166 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + P+ LD + AG+ V ++ + + E R+ G ++ + Sbjct: 453 RLRRLEQAVPDFLDRLASLNEAGISVVSSLDRVRDSDVGALDDEVNRIWRDIEWGATVEQ 512 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 S++R + V+ T+I+ + + L + R ++ + + + Sbjct: 513 SLNRFESRVKTPSVTRVVTLITNSMRASNEIGPVLRIAAEQARSDLRLRRQRRQEMLTYL 572 Query: 128 ASAWIIGSLPFCVST----LVYFTSPGYMNVLINDPRGHMLLGVAA 169 ++ + V ++ + P + P G + Sbjct: 573 VVIYVSFLVFLIVILALDYVLIPSLPD--AEALAGPEGAPAMLGGF 616 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 51/179 (28%), Gaps = 14/179 (7%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQHL 61 R + P + R G+ D + + +E V+ L Sbjct: 146 RADARQRQIDASLPRMVAFTYALTRGGMSFPDVLRTLSQNEDVFGEGAAEIGVVVRRMDL 205 Query: 62 -GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + L ++ + + P ++ + FS + Q G N+S L RD + K Sbjct: 206 FNVDLVTAVQDISQQTPSEQFAQFSENLVSVLQSGQNVSTFLREQYERYRDEAEEQQKEI 265 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + A ++ + + + G + I +++ Sbjct: 266 LELLATAAEVYVTVIVAGMLFLVTILLI-----------IGLTVGETLFIMQAIAYVII 313 >gi|229524709|ref|ZP_04414114.1| general secretion pathway protein F [Vibrio cholerae bv. albensis VL426] gi|229338290|gb|EEO03307.1| general secretion pathway protein F [Vibrio cholerae bv. albensis VL426] Length = 406 Score = 61.7 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 64/183 (34%), Gaps = 20/183 (10%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + V++G+P+ + + + QS +R+ V G +LS+S+ Sbjct: 67 DLALITRQLSTLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G+L L L+ +R+ M++K+Q + ++ Sbjct: 127 -----HVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPV---VLV 178 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-----------AFMLIGIMVMRLM 182 V+ L+ P + + + +L+G++++ + Sbjct: 179 VFAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYL 238 Query: 183 INF 185 + + Sbjct: 239 VRW 241 >gi|218703363|ref|YP_002410882.1| type IV pilin biogenesis protein [Escherichia coli UMN026] gi|293403176|ref|ZP_06647273.1| type IV pilin biogenesis protein [Escherichia coli FVEC1412] gi|298378708|ref|ZP_06988592.1| type IV pilin biogenesis protein [Escherichia coli FVEC1302] gi|300900864|ref|ZP_07119002.1| type II secretion system F domain protein [Escherichia coli MS 198-1] gi|218430460|emb|CAR11326.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli UMN026] gi|284919883|emb|CBG32938.1| protein transport protein HofC [Escherichia coli 042] gi|291430091|gb|EFF03105.1| type IV pilin biogenesis protein [Escherichia coli FVEC1412] gi|298281042|gb|EFI22543.1| type IV pilin biogenesis protein [Escherichia coli FVEC1302] gi|300355665|gb|EFJ71535.1| type II secretion system F domain protein [Escherichia coli MS 198-1] Length = 400 Score = 61.7 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 55/182 (30%), Gaps = 22/182 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + G +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPVLTQGIMTLADFSGEWGWLLVLFGFLLAIANKLLM 235 Query: 180 RL 181 R Sbjct: 236 RR 237 >gi|171915471|ref|ZP_02930941.1| General secretion pathway protein F [Verrucomicrobium spinosum DSM 4136] Length = 434 Score = 61.7 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 58/176 (32%), Gaps = 12/176 (6%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L K + +F ++ + + AGL + A+ + +S+ VR R+ E G Sbjct: 91 KLKKAQVIQFTEELCD-------LLAAGLQLEQALHAMENRSTLVVRELAVRLREKVRDG 143 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + S S+ + + + G+L L + L + ++A+V Sbjct: 144 IPFSVSLQHVS-----PSFGELYCNLVGAGEASGSLPSILNRQAIYLTQMQTLQARVTTA 198 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + L T + + D G ++ +AA+ I Sbjct: 199 LIYPIFIITSGLGLAVMFLTYLLPKLAVLIKSTHGDLPGIAVVLMAASDFFIAWWW 254 >gi|91224971|ref|ZP_01260230.1| general secretion pathway protein F [Vibrio alginolyticus 12G01] gi|91190217|gb|EAS76487.1| general secretion pathway protein F [Vibrio alginolyticus 12G01] Length = 405 Score = 61.7 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 21/176 (11%), Positives = 58/176 (32%), Gaps = 8/176 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 + + V++G+P+ + + + Q+ +RS V G L++S + Sbjct: 64 TSELALITRQLSTLVQSGMPLEECLRAVSEQAEKPRIRSMLAAVRSKVTEGYPLADSFAD 123 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + G+L L L+ + +R+ M++K+ + Sbjct: 124 YP-----HVFDELYRSMVAAGEKSGHLDTVLERLADYVENRQKMRSKLLQAMIYPVVLVV 178 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMINF 185 + + V + + + LL + G+++ +++ Sbjct: 179 FAVVIVSFLLATVVPKIIEPIIQMGQELPQSTQFLLAASEFVQDWGLIIFVVLVAL 234 >gi|294142970|ref|YP_003558948.1| general secretion pathway protein F [Shewanella violacea DSS12] gi|293329439|dbj|BAJ04170.1| general secretion pathway protein F [Shewanella violacea DSS12] Length = 389 Score = 61.7 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 53/161 (32%), Gaps = 6/161 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 + I V AGLP+ +A+ + Q D + S V G SL++S++ Sbjct: 49 AELALITRQIATLVAAGLPIEEALKAVGQQCEKDRLASMVMAVRSRVVEGYSLADSMAEF 108 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G+L L L+ R+ +K+K+ + + Sbjct: 109 P-----HIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKMTQAMIYPIVLTVV 163 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + + V G + L +A++ + Sbjct: 164 AIGVIGILLAAVVPQVVGQFEHMGQQLPWTTQLLIASSDFV 204 >gi|323173799|gb|EFZ59428.1| general secretion pathway protein F [Escherichia coli LT-68] Length = 407 Score = 61.7 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 60/176 (34%), Gaps = 8/176 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMINFDV 187 + + T V + L + L+ ++ A G+ + ++ F V Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQASGVYWLAGLLGFLV 238 >gi|257459470|ref|ZP_05624579.1| type II secretion system protein [Campylobacter gracilis RM3268] gi|257442895|gb|EEV18029.1| type II secretion system protein [Campylobacter gracilis RM3268] Length = 414 Score = 61.7 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 64/167 (38%), Gaps = 8/167 (4%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + AG+ + D++ + + D ++ F + + + GLSL+ES + + Sbjct: 79 IRQLSVMTNAGISIHDSIKEVARAAEDKTLKEIFSAMNDDLNAGLSLTESTEKFRGQLG- 137 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + GN++E+LA L+ +L++ + K + ++ Sbjct: 138 ----DVVVAMVSLGEATGNMAESLAKLAAMLQELWENQRKFKKAMRYPMILMIVMAIAFS 193 Query: 139 CVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVMRLMI 183 + V L D +LLG+ + GI V+ +I Sbjct: 194 VLMMYVVPKFREIFEDLGADLPLPTRILLGIESTLNNYGIFVLAGII 240 >gi|159040453|ref|YP_001539706.1| type II secretion system protein [Salinispora arenicola CNS-205] gi|157919288|gb|ABW00716.1| type II secretion system protein [Salinispora arenicola CNS-205] Length = 300 Score = 61.7 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 18/180 (10%), Positives = 57/180 (31%), Gaps = 3/180 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++R ++ + G + A+ V + + ++ E R + G Sbjct: 103 RAEQRAIARVEAVGEWTRRLKDVSATGQGLQAAITGTVATAPEEIQEEVRLLAARLQAGW 162 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQS-QLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++ + + + G L + L +++ + +++A Sbjct: 163 LARPALLAFADEIADPVCDQVVAALILHLTDRGERLGDVLGSIASAASAEVATRREIEAK 222 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + + + + V + Y+ P G +++ V ++ + +R M Sbjct: 223 RTQPRFAVRFLTGMTLAVLAY-GLLNTDYIRP-YGTPTGQLVMAVLGVAFVVLLAWVRAM 280 >gi|158317568|ref|YP_001510076.1| type II secretion system protein [Frankia sp. EAN1pec] gi|158112973|gb|ABW15170.1| type II secretion system protein [Frankia sp. EAN1pec] Length = 338 Score = 61.7 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 63/157 (40%), Gaps = 6/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R + L +FP +++ +V AG A+ + + + +E R + H Sbjct: 182 LTRAIREREDRMLMEFPTVAELLALAVTAGESAIGALERVSRLTHGELGTELRLALADAH 241 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL +++ + L ++ F ++V + G L++ L + +R+ + Sbjct: 242 AGASLVQALEGIATRTSLPPLARFVDGMAVAIERGTPLADVLRAQAVDVREAG------K 295 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 +EA I +P L + L++ Sbjct: 296 RQLLEAGGRKEIAMMIPVVFLILPTTVIFAFYPALVS 332 >gi|315227313|ref|ZP_07869100.1| hypothetical protein HMPREF0620_1581 [Parascardovia denticolens DSM 10105] gi|315119763|gb|EFT82896.1| hypothetical protein HMPREF0620_1581 [Parascardovia denticolens DSM 10105] Length = 307 Score = 61.7 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 60/181 (33%), Gaps = 6/181 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 + R K + + ++ + G + DA + V + + L Sbjct: 73 RARLRVKKTDAG--DFIAELISLLHNGSGMVDA----CQEMGGMVFAIPELTDDRMKAVL 126 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + R R + + + LG + S+ L + + + K ++ Sbjct: 127 ARRCGHGRSDRAYLTRLARQLVASCKLSATLGCSASQCLEAVGVEHKRYLAVADKKRSAL 186 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + ++ LP V TS VL P G + L +AA +G+ ++ ++ Sbjct: 187 SIPRLTVKVLLILPLLVLGGSQLTSARTFQVLFMRPVGWLCLSLAAILYGLGLRWVKRLL 246 Query: 184 N 184 Sbjct: 247 R 247 >gi|114321307|ref|YP_742990.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227701|gb|ABI57500.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1] Length = 312 Score = 61.7 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 59/144 (40%), Gaps = 3/144 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQH 60 L R + + A+ I+ + +G V A+ ++ + + E + Sbjct: 152 LASARQMRIGEQVTTAVQILRMLLDSGQSVQHALGMVAVEGRELMPDLSRELDLALNRAR 211 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L E + + R + + E+ ++ + GGN+ E L L+ ++ DR+ + + + Sbjct: 212 SGEGLVEVLDGLARDLEVPELDDTVLILKQVVEQGGNVDEPLTRLAELINDRQRTRTQEK 271 Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144 M AK S ++ L + ++ Sbjct: 272 VTKMSAKMSVVMMLFLFPALLVVL 295 >gi|116255775|ref|YP_771608.1| putative transmembrane pilus component protein [Rhizobium leguminosarum bv. viciae 3841] gi|115260423|emb|CAK03527.1| putative transmembrane pilus component protein [Rhizobium leguminosarum bv. viciae 3841] Length = 301 Score = 61.3 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 66/153 (43%), Gaps = 4/153 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLG 62 + R + +FP LD++V + +A + +++ + + V E + ++ LG Sbjct: 147 KAQDRKERISREFPYFLDLVVMTQQAQATLPESLRLYAEAAPGTVMSEEIEQTLKDVALG 206 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + E++ R+ R M +EV + G N E L +R LR R + + Sbjct: 207 TGMIEALQRLERRMTAEEVIRVIRAVIQGEVEGSNRVELLREHARDLRFR---RWEKADR 263 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + E + ++ ++ VS L+ +P + ++ Sbjct: 264 ASEKLKAKIVMPAMMIVVSILLLVLAPAIVEMM 296 >gi|50122722|ref|YP_051889.1| type IV pilin biogenesis protein [Pectobacterium atrosepticum SCRI1043] gi|49613248|emb|CAG76699.1| protein transport protein [Pectobacterium atrosepticum SCRI1043] Length = 401 Score = 61.3 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 47/140 (33%), Gaps = 9/140 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 + + + ++AGLP+ DA+ ++ Q R R V G SLSE++ Sbjct: 58 REQLGELIKQLAALLQAGLPLLDALKLVSEQHDRPGWRCVLRDVRTHVAQGSSLSEALLY 117 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P+ +L G L L++ + ++ KV + Sbjct: 118 YPHIFPV-----LYRSFIAVGELTGKLDTCCLQLAQQQEKQSRLQQKVIKALRYP---CF 169 Query: 132 IIGSLPFCVSTLVYFTSPGY 151 ++ ++ P + Sbjct: 170 VLTIAIVVSMMMLILVLPEF 189 >gi|119773509|ref|YP_926249.1| type IV pilus biogenesis protein PilC [Shewanella amazonensis SB2B] gi|119766009|gb|ABL98579.1| type IV pilus biogenesis protein PilC [Shewanella amazonensis SB2B] Length = 419 Score = 61.3 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 15/172 (8%), Positives = 51/172 (29%), Gaps = 8/172 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D I + AG+P+ + ++ +R ++ G+ LS+++ Sbjct: 80 DIAMVTRQIATMLMAGVPLVTTIEILGKGHEKPKMRELLGTILNDIQAGIPLSDALR--- 136 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G+L ++ + +K+K++ A + Sbjct: 137 --PHRIYFDDLYVDLVAAGEHSGSLDTVFDRIATYREKAEALKSKIKKAMFYPAAVVVVA 194 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183 ++ + V + +++ ++ + ++ Sbjct: 195 IAVTTLLLLFVVPQFEEIFTSFGAELPAFTQLIINISRFLQSSWYFFLTAIV 246 >gi|296120696|ref|YP_003628474.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] gi|296013036|gb|ADG66275.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] Length = 406 Score = 61.3 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 55/171 (32%), Gaps = 6/171 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISR 71 D + + V AG+ +S A+ + Q+ S ++ + E G S ++S Sbjct: 67 QADIVSMTSQLAVVVDAGVALSVALEGLASQAVSPALKQMLTTIEERVKSGDDFSTALSE 126 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 R + + G+L L+ L+ L+ + +VQ M A Sbjct: 127 FPRS-----FDARYVNLVKAGEATGHLGPILSRLAEQLQQESETRQRVQGAMMYPAAMLL 181 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + T V+ + + + + L G ++ Sbjct: 182 MCVGACIFLLTYVFPKIAPMFAGRGIELPAATRILLTVSNSLTGYWWAWIL 232 Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 43/133 (32%), Gaps = 5/133 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + +V AG+PV A+ + + + F+ +E L ++ +SI++++ Sbjct: 273 LARIARTLSATVSAGVPVLPALELAAKVAGN---RIFQDAMEDVALHVTSGQSIAQIMAT 329 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + G L L LS + K +E A + Sbjct: 330 --NPVFPKSVVQMIAAGEQTGQLGTVLGKLSDHYDREVAVSIKSATSLIEPIMVAVMGLV 387 Query: 136 LPFCVSTLVYFTS 148 + ++ Sbjct: 388 IGTIALGMLLPIF 400 >gi|258623360|ref|ZP_05718364.1| MSHA biogenesis protein MshG [Vibrio mimicus VM573] gi|262164143|ref|ZP_06031882.1| type II secretory pathway component PulF [Vibrio mimicus VM223] gi|258584326|gb|EEW09071.1| MSHA biogenesis protein MshG [Vibrio mimicus VM573] gi|262027671|gb|EEY46337.1| type II secretory pathway component PulF [Vibrio mimicus VM223] Length = 408 Score = 61.3 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 18/165 (10%), Positives = 45/165 (27%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72 + + +AG+P+ ++ + + E V G SLS Sbjct: 67 EVLVIFCRQMYSLTKAGVPLLRSMRGLTQNCHNKQLKEALESVCNELTNGRSLS-----A 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + S + + G L +AL L+ + +++ Sbjct: 122 SMQLHPGIFSPLFVSMIQVGENTGRLDQALLQLANYYEQEVETRKRIKTAMRYPTFVIIF 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + F ++ V + D + + + + Sbjct: 182 VVTAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYW 226 Score = 40.1 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 14/135 (10%), Positives = 41/135 (30%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + AG+P++ ++A+ + E R + + +S S++ + Sbjct: 269 RAQLSRFSRTFSLMLSAGVPLNQSLALSAEAIDNKFL-EQRILEMKSQIEAGVSVSVTAV 327 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 ++ + + + G + E L +S + K +E ++ Sbjct: 328 ----NVKIFTPLVIQMISVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLVFV 383 Query: 133 IGSLPFCVSTLVYFT 147 + + Sbjct: 384 AAMVLVLALGIFLPM 398 >gi|255327037|ref|ZP_05368113.1| type II secretion system protein [Rothia mucilaginosa ATCC 25296] gi|255296254|gb|EET75595.1| type II secretion system protein [Rothia mucilaginosa ATCC 25296] Length = 310 Score = 61.3 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 59/156 (37%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KR + + +FP +++ SV AG A+ I S + EF ++ Sbjct: 155 LGEAVTKREKQLVAEFPALAEMMALSVTAGESALAALERICLTSRGELAREFSEILAQTR 214 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+SL ++ + +S F I+V + G L++ L ++ +RD + Sbjct: 215 TGVSLLSALQEFAERTRVPALSRFVEGIAVAIERGTPLADVLRAQAQDVRDNAKRELMET 274 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 A E A ++ + F M + Sbjct: 275 AGKKEIAMLAPVVFFILPLTVIFAVFPGLSLMRLNF 310 >gi|166713412|ref|ZP_02244619.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzicola BLS256] Length = 405 Score = 61.3 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 19/183 (10%), Positives = 56/183 (30%), Gaps = 5/183 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ L++K+ + + AG P+ A+++++ E R + Sbjct: 54 LRMLLRKKPFD-NAALVQFTQQLATLIGAGQPLDRALSILMD----LPEDEKSRRVIGDV 108 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + S + + GG++ + L L+ L + ++ KV Sbjct: 109 RDTVRGGAPLSSALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKVI 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + ++G + V L ++ ++ ++ Sbjct: 169 NALIYPAILLAVVGCALLFLLGYVVPQFAQMYESLDVALPWFTQAVLSVGLLVRDWWLVL 228 Query: 181 LMI 183 +++ Sbjct: 229 IVV 231 >gi|313681843|ref|YP_004059581.1| type ii secretion system f domain [Sulfuricurvum kujiense DSM 16994] gi|313154703|gb|ADR33381.1| Type II secretion system F domain [Sulfuricurvum kujiense DSM 16994] Length = 415 Score = 61.3 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 64/179 (35%), Gaps = 8/179 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSL 65 ++ D+ A+ + AG+ + D++ I + +++ + E + G SL Sbjct: 65 RKKKLKQDNLIAAIRQLAVMANAGISIHDSLKEIAEATTDKTLQTVLGTMAEDINAGRSL 124 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S+S E+ S + + GN++EAL L+ +L + + K + Sbjct: 125 SQSAHNF-----HYELGNLSLAMIELGEKTGNMAEALHKLADMLEEIRRNIIKFKKAMAY 179 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP--RGHMLLGVAAAFMLIGIMVMRLM 182 + + + + V L +LL + F G+ V+ + Sbjct: 180 PRNVMIAMAIAFTVLISYVVPQFKTIFEQLGATLPMPTKILLFLEHLFNTYGLYVLAAI 238 >gi|149197154|ref|ZP_01874206.1| General secretion pathway protein F [Lentisphaera araneosa HTCC2155] gi|149139700|gb|EDM28101.1| General secretion pathway protein F [Lentisphaera araneosa HTCC2155] Length = 397 Score = 61.3 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 20/158 (12%), Positives = 51/158 (32%), Gaps = 4/158 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + + ++AG+ + ++ +I + F + ++ Sbjct: 61 LEEFTENLSSLLKAGVTLERSLEIIEESLENEHGRAFVGHLRQGLH----EGQKFSVLVG 116 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + T + + + G LS L L L+++K ++ V + S+ +I S Sbjct: 117 DRPEFFPKIYTHLVMVGEESGTLSAVLERLHIYLQEKKETRSYVISASVYPLIVGFISLS 176 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + + + +P G + +F L Sbjct: 177 VLVFMLAFIVPQFAQTFAKAKTEPSGLAAILFDVSFFL 214 >gi|156972925|ref|YP_001443832.1| general secretion pathway protein F [Vibrio harveyi ATCC BAA-1116] gi|156524519|gb|ABU69605.1| hypothetical protein VIBHAR_00603 [Vibrio harveyi ATCC BAA-1116] Length = 406 Score = 61.3 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 21/169 (12%), Positives = 56/169 (33%), Gaps = 8/169 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 + + V++G+P+ + + + Q+ +RS V G L++S+ Sbjct: 65 TAELALITRQLSTLVQSGMPLEECLKAVSEQAEKPRIRSMIAAVRSKVTEGYPLADSLGD 124 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + G+L L L+ + +R+ M++K+ + Sbjct: 125 YP-----HVFDELYLSMVAAGEKSGHLDTVLERLADYVENRQKMRSKLLQAMIYPVVLVV 179 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMV 178 + + + V + + + LL + G+++ Sbjct: 180 FAVGIVSLLLSSVVPKIIEPIIQMGQELPQSTQFLLSASEFVQEWGLII 228 >gi|307353960|ref|YP_003895011.1| type II secretion system F domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307157193|gb|ADN36573.1| Type II secretion system F domain protein [Methanoplanus petrolearius DSM 11571] Length = 336 Score = 61.3 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 17/148 (11%), Positives = 50/148 (33%), Gaps = 3/148 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 RT PN + +G+ + +A+ + + +++ + Sbjct: 115 RTRNIEVALPNFFRDVAGMNESGMTLPNAIHTVSDGDYGTLTPYIKKLDNEVSWNIPFIN 174 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +I R + +I+ SQ GG++SE L + + ++ + + + Sbjct: 175 AIHRFGERLGTPLAKRSVDLIAKASQAGGDVSEVLRAAANDSYEFVSLATERRNNML--- 231 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 I+ ++ + +++ + Sbjct: 232 IYIVIVLVSFLVFLLVIAIMTSTFLDTM 259 >gi|261415454|ref|YP_003249137.1| Type II secretion system F domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371910|gb|ACX74655.1| Type II secretion system F domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326068|gb|ADL25269.1| pilus assembly protein PilC [Fibrobacter succinogenes subsp. succinogenes S85] Length = 400 Score = 61.3 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 70/186 (37%), Gaps = 18/186 (9%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 +D + AGLP+ + ++ + +++ ++ ++ + G SL++++++ Sbjct: 59 TEDITRFTRMFSSMCSAGLPMLQCLNILEAQCENPELKNVVHKLTQSINGGSSLADALAQ 118 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + GG L LA L+ L + + +K KV+ Sbjct: 119 HPK-----VFDSLYCNMVAAGEAGGILEGILARLAETLENNQRLKRKVKKALTYPIMVII 173 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA--------AFMLIGIMVM---- 179 + + + T V T L + + + AFM IG++++ Sbjct: 174 VGIVVVIALMTFVVPTFAEQFAALDAELPAPTQVVMNISDFIRNNGAFMFIGVIIIIFAY 233 Query: 180 RLMINF 185 ++++ Sbjct: 234 KMIMRI 239 Score = 36.3 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 16/140 (11%), Positives = 45/140 (32%), Gaps = 9/140 (6%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 + + + AG+ V DA+ V+ + + +V+E +S+ + Sbjct: 260 QIKSATAGFARTLGTLLNAGVSVMDALKVVATTAGN-------KVVEKAIYKISIGIAGG 312 Query: 71 RMVRYMPLQE--VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + + ++ + GNL L L+ + + +E Sbjct: 313 KSIAEPMEEVGIFPPMVIQMTGVGEKTGNLGGMLLKLADFYDEEVDAAVDAVVSMIEPLI 372 Query: 129 SAWIIGSLPFCVSTLVYFTS 148 ++ G++ + + Sbjct: 373 IVFLGGAVGGLLIAMYMPMF 392 >gi|84386331|ref|ZP_00989359.1| Type II secretory pathway, component EpsF [Vibrio splendidus 12B01] gi|84378755|gb|EAP95610.1| Type II secretory pathway, component EpsF [Vibrio splendidus 12B01] Length = 406 Score = 61.3 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 22/178 (12%), Positives = 51/178 (28%), Gaps = 15/178 (8%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D I V++G+P+ + + + QS P + ++ Sbjct: 67 DLALITRQISTLVQSGMPLEECLKAVAEQSEKPRIRTMLLAVRSKVT----EGYSLADSL 122 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + G+L L L+ +R+ M++K+ + Sbjct: 123 SDYPHIFDELFRAMVAAGEKSGHLDAVLERLADYAENRQKMRSKLLQAMIYPIVLVVFAV 182 Query: 135 SLPFCVSTLVYFTS-----------PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ + V P L+ G+ + IG++V+ Sbjct: 183 TIVSFLLATVVPKIVEPIIQMGQELPQSTQFLLASSEFIQNWGIQLLVLTIGVIVLVK 240 >gi|325920916|ref|ZP_08182809.1| Type II secretory pathway component [Xanthomonas gardneri ATCC 19865] gi|325548598|gb|EGD19559.1| Type II secretory pathway component [Xanthomonas gardneri ATCC 19865] Length = 405 Score = 61.3 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 20/183 (10%), Positives = 56/183 (30%), Gaps = 5/183 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ L++K+ + + AG P+ A+++++ E R + Sbjct: 54 LRMLLRKKPFD-NAALVQFTQQLSTLIGAGQPLDRALSILMD----LPEDEKSRRVIGDV 108 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + S + + GG++ + L L+ L + ++ KV Sbjct: 109 RDTVRGGAPLSSALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKVI 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + ++G + V L ++ ++ V+ Sbjct: 169 NALIYPAILLAVVGCALLFLLGYVVPQFAQMYESLDVALPWFTQAVLSVGLLVRDWWVVL 228 Query: 181 LMI 183 +++ Sbjct: 229 IVV 231 >gi|325262322|ref|ZP_08129059.1| putative general secretion pathway protein F [Clostridium sp. D5] gi|324032154|gb|EGB93432.1| putative general secretion pathway protein F [Clostridium sp. D5] Length = 399 Score = 61.3 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 27/193 (13%), Positives = 59/193 (30%), Gaps = 18/193 (9%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQHLGL 63 K R + + V AG+ + A+ +I R + ++ G+ Sbjct: 49 KNRKQFKPKVLADFSRQLSTLVGAGVTLVRALNIIANGEAIKPNERQVYEDMVRQIRQGI 108 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 SLSE++ + ++ GNL ++ + + K+ + Sbjct: 109 SLSEAMEA-----QNGAFPPLMIYMYRSAESSGNLELVSMQMALMFEKEHRLNGKISSSL 163 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL----------GVAAAFML 173 + K +I + ++ V + + P +L A L Sbjct: 164 VYPKILGVMIIGVVMVLTKFVMPQLQELFDTMETLPLPTRILNGISDFMQSYWFLAIAAL 223 Query: 174 IGIMVMRL-MINF 185 +GI V ++ Sbjct: 224 LGIWVGWKALLRI 236 >gi|269964605|ref|ZP_06178844.1| General secretion pathway protein F [Vibrio alginolyticus 40B] gi|269830732|gb|EEZ84952.1| General secretion pathway protein F [Vibrio alginolyticus 40B] Length = 405 Score = 61.3 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 21/176 (11%), Positives = 58/176 (32%), Gaps = 8/176 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 + + V++G+P+ + + + Q+ +RS V G L++S + Sbjct: 64 TSELALITRQLSTLVQSGMPLEECLRAVSEQAEKPRIRSMLAAVRSKVTEGYPLADSFAD 123 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + G+L L L+ + +R+ M++K+ + Sbjct: 124 YP-----HVFDELYRSMVAAGEKSGHLDTVLERLADYVENRQKMRSKLLQAMIYPVVLVV 178 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMINF 185 + + V + + + LL + G+++ +++ Sbjct: 179 FAVVIVSFLLATVVPKIIEPIIQMGQELPQSTQFLLAASEFVQDWGLIIFVVLVAL 234 >gi|221066735|ref|ZP_03542840.1| type II secretion system protein [Comamonas testosteroni KF-1] gi|220711758|gb|EED67126.1| type II secretion system protein [Comamonas testosteroni KF-1] Length = 338 Score = 61.3 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 69/158 (43%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + + +R + +++ P +D++ GL + ++ ++ + + SE + Sbjct: 174 VSYKSSQRREQVVEELPLFVDLLRLLQGVGLSIDQSLQILSQEFGSVLPVLSSELAMANQ 233 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S +S+ R+ Q+++ ++ + GG + L + LR+++ + Sbjct: 234 LYASGRSRDQSLQRLTHLSDDQDMTAVVNLLVQVDRHGGAVQGPLQDFGIRLREKRQARF 293 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 K + ++ K + ++ +L + +V PG+M V+ Sbjct: 294 KEKIGAITVKMTGVMVLTLLPAL--MVITAGPGFMAVI 329 >gi|121593088|ref|YP_984984.1| general secretion pathway protein F [Acidovorax sp. JS42] gi|222109858|ref|YP_002552122.1| general secretion pathway protein f [Acidovorax ebreus TPSY] gi|120605168|gb|ABM40908.1| general secretion pathway protein F [Acidovorax sp. JS42] gi|221729302|gb|ACM32122.1| general secretion pathway protein F [Acidovorax ebreus TPSY] Length = 409 Score = 61.3 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 21/163 (12%), Positives = 50/163 (30%), Gaps = 4/163 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + V +GLP+ A+ + ++ D + + + S Sbjct: 72 LGVWTRQLAGLVGSGLPLERALTALAEEADDERQRHLLAALRAEVNAGS----TFARALA 127 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 +E S + + G L+E L +L+ L R+ ++AK+ ++ I Sbjct: 128 QHPREFSDIYCAVIGAGESSGGLAEVLDSLADDLEQRQALRAKLIGAALYPAIVTVIAIV 187 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + V + +A + ++ Sbjct: 188 IVLFLVGYVVPQVASVFAGTKRALPFLTVAMLALSDVVRNYGW 230 Score = 37.0 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 39/130 (30%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ ++ + G L+ ++++ R+ Sbjct: 278 FAGTLAMLAGAGVPILKALQAAAETLNNRALRADALDALVLVREGAPLASALAQKKRFPG 337 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L L + L +A A +E + G + Sbjct: 338 ------LVAMFARLGEQTGQLPTMLQRAATQLGTEVQRRAMQLATVLEPLLIVAMGGIVM 391 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 392 LIVLAVLMPI 401 >gi|83338437|gb|ABC11888.1| PilC [Aliivibrio fischeri] Length = 412 Score = 61.3 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 24/175 (13%), Positives = 59/175 (33%), Gaps = 17/175 (9%) Query: 1 MKHLIKKRTAKFLD--------DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSE 51 +K + K+ + F D + + +G+PV ++ +I + ++S Sbjct: 51 IKKIKKRSISSFEKMKHAVKRKDITLFTRQLSTMLASGVPVVQSLQLIAENNTKAEMKSI 110 Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111 +V + G LS+++S F + + G+L++A + L+ Sbjct: 111 LHQVCLSIEAGTQLSKALS-----TSCSHFDSFYIDLIATGEETGSLAQAFSRLAEYREK 165 Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 +++KV + + ++ F P + N+ Sbjct: 166 SDALRSKVIKAMIYPS---MVFLVAITVTILMLTFVIPEFENIFKGFGAELPWFT 217 Score = 41.6 bits (96), Expect = 0.043, Method: Composition-based stats. Identities = 12/135 (8%), Positives = 36/135 (26%), Gaps = 5/135 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + S +GLP+ ++ + + E ++ R Sbjct: 276 AAIAKFSRTLATSFSSGLPILHSLQTTSKTAGNLYYQEAILSVQQHTAAGMPLYIAMRHT 335 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 P + + + G L + L ++ + + + +E ++ Sbjct: 336 EAFP-----EMVLQMVMIGEESGKLDDMLNKIAHVYEEDVDNTVDNLGKILEPFIIVFLG 390 Query: 134 GSLPFCVSTLVYFTS 148 + V ++ Sbjct: 391 TMIGGLVVSMYLPIF 405 >gi|258627006|ref|ZP_05721804.1| MSHA biogenesis protein MshG [Vibrio mimicus VM603] gi|258580680|gb|EEW05631.1| MSHA biogenesis protein MshG [Vibrio mimicus VM603] Length = 408 Score = 61.3 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 18/165 (10%), Positives = 45/165 (27%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72 + + +AG+P+ ++ + + E V G SLS Sbjct: 67 EVLVIFCRQMYSLTKAGVPLLRSMRGLTQNCHNKQLKEALESVCNELTNGRSLS-----A 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + S + + G L +AL L+ + +++ Sbjct: 122 SMQLHPGIFSPLFVSMIQVGENTGRLDQALLQLANYYEQEVETRKRIKTAMRYPTFVIIF 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + F ++ V + D + + + + Sbjct: 182 VVTAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYW 226 Score = 40.1 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 14/135 (10%), Positives = 41/135 (30%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + AG+P++ ++A+ + E R + + +S S++ + Sbjct: 269 RAQLSRFSRTFSLMLSAGVPLNQSLALSAEAIDNKFL-EQRILEMKSQIEAGVSVSVTAV 327 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 ++ + + + G + E L +S + K +E ++ Sbjct: 328 ----NVKIFTPLVIQMISVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLVFV 383 Query: 133 IGSLPFCVSTLVYFT 147 + + Sbjct: 384 AAMVLVLALGIFLPM 398 >gi|257790636|ref|YP_003181242.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|257474533|gb|ACV54853.1| type II secretion system protein [Eggerthella lenta DSM 2243] Length = 288 Score = 61.3 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 56/143 (39%), Gaps = 1/143 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 + + P+ALD++ + AG A+A + + + F RV + Sbjct: 137 RRAEWRDELDRQLPDALDLMAICISAGSSFEGALASVGTRMDGAIAEAFARVAKE-AAYS 195 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S SE++ + + ++FF+ + + G +L + + ++ +R + ++ Sbjct: 196 SRSEALLGLADRAQVNSITFFTASLVQAERAGSSLVDIIRMQAQSVRTERRLRVDDMTNK 255 Query: 124 MEAKASAWIIGSLPFCVSTLVYF 146 + K ++ + + L+ Sbjct: 256 LSTKMLFPMLLLMLPSIIMLMLA 278 >gi|194364325|ref|YP_002026935.1| type II secretion system protein [Stenotrophomonas maltophilia R551-3] gi|194347129|gb|ACF50252.1| type II secretion system protein [Stenotrophomonas maltophilia R551-3] Length = 406 Score = 61.3 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 19/142 (13%), Positives = 41/142 (28%), Gaps = 4/142 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + AG P+ A+++++ E R T + + Sbjct: 67 AALLQFTQQLATLLGAGQPLDRALSILL----GLPEDERSRRAITDIRDVVRGGAPLSTA 122 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + + GG+L + L L+ L + ++ KV + ++ Sbjct: 123 LERQHGLFSRLYVNMVRAGEAGGSLHDTLQRLADYLERSRALQGKVINALVYPAILLVVV 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155 G + V L Sbjct: 183 GGALLFLLGYVVPQFAQMYESL 204 >gi|317484813|ref|ZP_07943709.1| bacterial type II secretion system F domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316923943|gb|EFV45133.1| bacterial type II secretion system F domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 413 Score = 61.3 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 24/179 (13%), Positives = 54/179 (30%), Gaps = 21/179 (11%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + + AGLP+ +A+A I R+ + G L++ ++ Sbjct: 79 MARQLATLLHAGLPLDEALASICAHDDASRMQGIVSRLRDRIMAGGDLADGLAEFPN--- 135 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 S + + G L + + + + + KVQA ++ + Sbjct: 136 --VFSSTFVTMVRAGEASGTLELVIERFAEHIEQQVALVRKVQATLAYPILMLFVGIGVV 193 Query: 138 FCVSTLVYFTSPGYMNVLINDPR---------------GHMLLGVAAAFMLIGIMVMRL 181 + T V + + G ++ + ++IG+ MR Sbjct: 194 IFLLTFVIPKVTQIFSDMGRALPVPTQILLAVSDGIRSGWWIILLLVLCIMIGVWRMRR 252 >gi|302205373|gb|ADL09715.1| type II secretion system membrane protein [Corynebacterium pseudotuberculosis C231] Length = 251 Score = 61.3 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 67/182 (36%), Gaps = 1/182 (0%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K ++ + ++ AL + +RAG+ S A+ + + + Sbjct: 67 KRRLEASQRREQEEISTALGSLAGDLRAGVEASVALENVAQNLPESALKDTLMAASRSSR 126 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + + + R + + + + + + G L+ L L + + QA Sbjct: 127 IGGSASAYWQQ-RALAIHGIEKITHAWRLSERYGIALAPLLEKNRASLDEDLRHAERTQA 185 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 AKA+A+I+ +LPF L + L + G +LL + + +G + + Sbjct: 186 ALQGAKATAYILTALPFVGILLGRGMGVNALGFLFHTRIGAVLLILGTLLVCVGNLWSQA 245 Query: 182 MI 183 ++ Sbjct: 246 IM 247 >gi|197335879|ref|YP_002156984.1| type IV pilus assembly protein TapC [Vibrio fischeri MJ11] gi|197317369|gb|ACH66816.1| type IV pilus assembly protein TapC [Vibrio fischeri MJ11] Length = 412 Score = 61.3 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 59/175 (33%), Gaps = 17/175 (9%) Query: 1 MKHLIKKRTAKFLD--------DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSE 51 +K + K+ + F D + + +G+PV ++ +I + ++S Sbjct: 51 IKKIKKRSISSFEKMKHAVKRKDITLFTRQLSTMLASGVPVVQSLQLIAENNTKAEMKSI 110 Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111 +V + G LS+++S F + + G+L++A A L+ Sbjct: 111 LHQVCLSIEAGTQLSKALSS-----SCSHFDSFYIDLIATGEETGSLAQAFARLAEYREK 165 Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 +++KV + + ++ F P + N+ Sbjct: 166 SDALRSKVIKAMIYPS---MVFLVAITVTILMLTFVIPEFENIFKGFGAELPWFT 217 Score = 41.6 bits (96), Expect = 0.043, Method: Composition-based stats. Identities = 12/135 (8%), Positives = 36/135 (26%), Gaps = 5/135 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + S +GLP+ ++ + + E ++ R Sbjct: 276 AAIAKFSRTLATSFSSGLPILHSLQTTSKTAGNLYYQEAILSVQQHTAAGMPLYIAMRHT 335 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 P + + + G L + L ++ + + + +E ++ Sbjct: 336 EAFP-----EMVLQMVMIGEESGKLDDMLNKIAHVYEEDVDNTVDNLGKILEPFIIVFLG 390 Query: 134 GSLPFCVSTLVYFTS 148 + V ++ Sbjct: 391 TMIGGLVVSMYLPIF 405 >gi|260767302|ref|ZP_05876242.1| MSHA biogenesis protein MshG [Vibrio furnissii CIP 102972] gi|260617709|gb|EEX42888.1| MSHA biogenesis protein MshG [Vibrio furnissii CIP 102972] Length = 407 Score = 61.3 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 19/168 (11%), Positives = 47/168 (27%), Gaps = 6/168 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + +AG+P+ ++ + ++ ++ V G LS Sbjct: 66 EVLVIFCRQLYSLTKAGVPLLRSMKGLTQNCANKQLQHALEEVCSELTNGRGLS-----A 120 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 M S + + G L EAL L+ + +++ Sbjct: 121 SMQMHAGVFSPLFVSMINVGENTGRLDEALLQLANYYEQELETRKRIKTAMRYPTFVVSF 180 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I F ++ V N + + + + + ++ Sbjct: 181 IVIAMFILNVKVIPQFASMFNRFGVELPLPTRILIGMSNFFVNYWMVM 228 Score = 44.0 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 13/135 (9%), Positives = 35/135 (25%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 +RAG+P++ ++A+ + + ++ S Sbjct: 268 RAQLSRFSRTFSLMLRAGVPLNQSLALAAEALDNKFLEARLL-----EMKAAIEAGSSIS 322 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G + E L +S + K +E + Sbjct: 323 ATAINTGIFTPLVIQMIAVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLVIV 382 Query: 133 IGSLPFCVSTLVYFT 147 G + + Sbjct: 383 AGMVLVLALGIFLPM 397 >gi|289582786|ref|YP_003481252.1| type II secretion system protein F [Natrialba magadii ATCC 43099] gi|289532339|gb|ADD06690.1| Type II secretion system F domain protein [Natrialba magadii ATCC 43099] Length = 684 Score = 61.3 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 14/155 (9%), Positives = 55/155 (35%), Gaps = 3/155 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + + L + + GL + ++ + ++ + EF + + G SL Sbjct: 460 RHRNTVVKTLSEDLRKLSSANDTGLTLLESFQSVADTTNGKLAREFELMHTKVNYGTSLK 519 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + ++ + +I+ + +++ L + + +++ + ++ + Sbjct: 520 AALIEFNNKYHIPRLARTTRLITEAQEASNQITDVLRTAASASENHDDIERERKSRT--- 576 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + II V ++ +++ + G Sbjct: 577 RMQVVIIIMTFLTVLAVIAILKTQFIDTMAGLEAG 611 Score = 54.4 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 22/179 (12%), Positives = 58/179 (32%), Gaps = 3/179 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHL 61 R + +++ + GL + + + + V EF+ +++ Sbjct: 145 RASARKREINMLLTDSVSFMYALSVGGLNQLEIIEAMAQADDTYGEVAKEFQSIVKETEY 204 Query: 62 G-LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + +I P E+S F T + GG++ L + + ++ Sbjct: 205 FDVDYRTAIRNQAIETPSDELSQFLTDMLSIVNSGGDMESFLEDKKEKHMRTAKQEQEIT 264 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++E ++ SL + ++ + + +M + IG +V+ Sbjct: 265 LETLELFGEMYMTLSLFPLLLIIIMVVMQMIPQADVTNEMLYMTVYGLIPLTGIGFLVL 323 >gi|83338451|gb|ABC11891.1| PilC [Aliivibrio fischeri] Length = 412 Score = 61.3 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 59/175 (33%), Gaps = 17/175 (9%) Query: 1 MKHLIKKRTAKFLD--------DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSE 51 +K + K+ + F D + + +G+PV ++ +I + ++S Sbjct: 51 IKKIKKRSISSFEKMKHAVKRKDITLFTRQLSTMLASGVPVVQSLQLIAENNTKAEMKSI 110 Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111 +V + G LS+++S F + + G+L++A A L+ Sbjct: 111 LHQVCLSIEAGTQLSKALSS-----SCSHFDSFYIDLIATGEDTGSLAQAFARLAEYREK 165 Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 +++KV + + ++ F P + N+ Sbjct: 166 SDALRSKVIKAMIYPS---MVFLVAITVTILMLTFVIPEFENIFKGFGAELPWFT 217 Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats. Identities = 12/135 (8%), Positives = 36/135 (26%), Gaps = 5/135 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + S +GLP+ ++ + + E ++ R Sbjct: 276 AAIAKFSRTLATSFSSGLPILHSLQTTSKTAGNLYYQEAILSVQQHTAAGMPLYIAMRHT 335 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 P + + + G L + L ++ + + + +E ++ Sbjct: 336 EAFP-----EMVLQMVMIGEESGKLDDMLNKIAHVYEEDVDNTVDNLGKILEPFIIVFLG 390 Query: 134 GSLPFCVSTLVYFTS 148 + V ++ Sbjct: 391 TMIGGLVVSMYLPIF 405 >gi|269959417|ref|ZP_06173800.1| General secretion pathway protein F [Vibrio harveyi 1DA3] gi|269835854|gb|EEZ89930.1| General secretion pathway protein F [Vibrio harveyi 1DA3] Length = 406 Score = 61.3 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 53/152 (34%), Gaps = 9/152 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 + + V++G+P+ + + + Q+ +RS V G L++S+ Sbjct: 65 TAELALITRQLSTLVQSGMPLEECLKAVSEQAEKPRIRSMIAAVRSKVTEGYPLADSLGD 124 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + G+L L L+ + +R+ M++K+ + Sbjct: 125 YP-----HVFDELYLSMVAAGEKSGHLDTVLERLADYVENRQKMRSKLLQAMIYPV---V 176 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 ++ VS L+ P + +I + Sbjct: 177 LVVFAVGIVSLLLSSVVPKIIEPIIQMGQELP 208 >gi|21230136|ref|NP_636053.1| general secretion pathway protein F [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769873|ref|YP_244635.1| general secretion pathway protein F [Xanthomonas campestris pv. campestris str. 8004] gi|83303434|sp|P31744|GSPF_XANCP RecName: Full=General secretion pathway protein F gi|21111668|gb|AAM39977.1| general secretion pathway protein F [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575205|gb|AAY50615.1| general secretion pathway protein F [Xanthomonas campestris pv. campestris str. 8004] Length = 405 Score = 61.3 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 23/183 (12%), Positives = 59/183 (32%), Gaps = 5/183 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ L++K+ + + AG P+ A+++++ D RVI Sbjct: 54 LRMLLRKKPFD-NAALVQFTQQLATLIGAGQPLDRALSILMDLPEDDKSR---RVIADIR 109 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + + + S + + GG++ + L L+ L + +K KV Sbjct: 110 DTV-RGGAPLSVALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALKGKVI 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + ++G + V L ++ ++ ++ Sbjct: 169 NALIYPAILLAVVGCALLFLLGYVVPQFAQMYESLDVALPWFTQAVLSVGLLVRDWWLVL 228 Query: 181 LMI 183 ++I Sbjct: 229 VVI 231 >gi|190572738|ref|YP_001970583.1| putative general secretion pathway protein F [Stenotrophomonas maltophilia K279a] gi|190010660|emb|CAQ44269.1| putative general secretion pathway protein F [Stenotrophomonas maltophilia K279a] Length = 406 Score = 61.3 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 20/142 (14%), Positives = 41/142 (28%), Gaps = 4/142 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + AG P+ A+++++ E R T + + Sbjct: 67 AALLQFTQQLATLLGAGQPLDRALSILL----GLPEDERSRRAITDIRDVVRGGAPLSTA 122 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + + GG+L E L L+ L + ++ KV + ++ Sbjct: 123 LERQHGLFSRLYVNMVRAGEAGGSLHETLQRLADYLERSRALQGKVINALVYPAILLVVV 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155 G + V L Sbjct: 183 GGALLFLLGYVVPQFAQMYESL 204 >gi|260771888|ref|ZP_05880806.1| type 4 fimbrial assembly protein PilC [Vibrio metschnikovii CIP 69.14] gi|260613180|gb|EEX38381.1| type 4 fimbrial assembly protein PilC [Vibrio metschnikovii CIP 69.14] Length = 408 Score = 61.3 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 18/187 (9%), Positives = 54/187 (28%), Gaps = 17/187 (9%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSES 68 + + + G+P+ A+ ++ ++S ++ + G +S++ Sbjct: 64 RATNKEITLLTRQLSTMLATGVPIVQALKLVADSHQKAEMKSIITQISKGVAAGTPISKA 123 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + + GNL+E L+ + ++AKV + Sbjct: 124 MRTASSLFDP-----LYVDLVQTGEQSGNLAEVFERLATYREKTEQLRAKVIKALIYPAM 178 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM-----------LLGVAAAFMLIGIM 177 + + + + T++ + + + I I+ Sbjct: 179 VMLVALGVSYLMLTMIIPEFELMFQGFGAELPWFTQQVLKLSHLVQAYSLVFVLLCIAIV 238 Query: 178 VMRLMIN 184 +I Sbjct: 239 FGFKLIR 245 Score = 35.5 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 13/131 (9%), Positives = 38/131 (29%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + S AG+P+ D++ + + ++V G+ + ++ Sbjct: 277 FSRTLATSFAAGIPILDSLKTTAKTAGNLHFETAIQQVYRDTAAGMPMYIAMRNTGA--- 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L + L ++ I + +E ++ + Sbjct: 334 ---FPELVLQMVMIGEESGKLDDMLNKVATIYEFDVDNTVDNLGKILEPLIIVFLGTVVG 390 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 391 GLVVAMYLPIF 401 >gi|225375108|ref|ZP_03752329.1| hypothetical protein ROSEINA2194_00732 [Roseburia inulinivorans DSM 16841] gi|225213055|gb|EEG95409.1| hypothetical protein ROSEINA2194_00732 [Roseburia inulinivorans DSM 16841] Length = 203 Score = 61.3 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 25/194 (12%), Positives = 61/194 (31%), Gaps = 21/194 (10%) Query: 4 LIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + KK+ + D + V AG+P+ + ++++ + + +E VI Sbjct: 1 MKKKKQQMLGNLEIAAFCDQLSMIVSAGIPIYEGISILQEDAPEEETAEILSVISN---- 56 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 SL S + + +L G L E L L+ + ++++ ++ Sbjct: 57 -SLDHGSSFCDALRETNVFPKYVLDMIGIGELAGKLEEVLNALTGYYKREESIQNSIKNA 115 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG---------------HMLLGV 167 ++ ++ + V L +D G ++ + Sbjct: 116 VTYPLLMIAMMLAVILVLIAKVLPVFHQIYMELGSDLTGFAGAMMRFSDALNQYLFVIVI 175 Query: 168 AAAFMLIGIMVMRL 181 GI ++ Sbjct: 176 VLIAAAAGIFLISK 189 >gi|260771971|ref|ZP_05880888.1| general secretion pathway protein F [Vibrio metschnikovii CIP 69.14] gi|260612838|gb|EEX38040.1| general secretion pathway protein F [Vibrio metschnikovii CIP 69.14] Length = 406 Score = 61.3 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 57/184 (30%), Gaps = 22/184 (11%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + V++G+P+ + + + QS +R+ V G +L++S++ Sbjct: 67 DLALLTRQLSTLVQSGMPLEECLRAVSEQSEKPRIRNMLAAVRAKVTEGYTLADSLADYP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G+L L L+ +R+ M++K+ + Sbjct: 127 -----HIFDDLFRSMVAAGEKSGHLDAILERLADYAENRQKMRSKLMQALLYPIVLVVFA 181 Query: 134 GSLPFCVSTLVYF-----------TSPGYMNVLINDP-----RGHMLLGVAAAFMLIGIM 177 + + V P L++ G LL + Sbjct: 182 VGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLSSSDFVQQWGLTLLASVLVSIYFIKW 241 Query: 178 VMRL 181 ++R Sbjct: 242 LLRK 245 >gi|83338372|gb|ABC11879.1| PilC [Aliivibrio fischeri] Length = 412 Score = 61.3 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 24/169 (14%), Positives = 58/169 (34%), Gaps = 14/169 (8%) Query: 1 MKHLIKKRTAKFLD--------DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSE 51 +K + K+ + F D + + +G+PV ++ +I + ++S Sbjct: 51 IKKIKKRSISSFEKMKHAVKRKDITLFTRQLSTMLASGVPVVQSLQLIAENNTKAEMKSI 110 Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111 +V + G LS+++S F + + G+L++A A L+ Sbjct: 111 LHQVCLSIEAGTQLSKALSS-----SCSHFDSFYIDLIATGEETGSLAQAFARLAEYREK 165 Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 +++KV + + ++ + T V + Sbjct: 166 SDALRSKVIKAMIYPTMVFLVAITVTILMLTFVIPEFENIFKGFGAELP 214 Score = 42.0 bits (97), Expect = 0.041, Method: Composition-based stats. Identities = 11/135 (8%), Positives = 36/135 (26%), Gaps = 5/135 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + S +GLP+ ++ + + E ++ R Sbjct: 276 AAIAKFSRTLATSFSSGLPILHSLQTTSKTAGNLYYQEAILSVQQHTAAGMPLYIAMR-- 333 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + + G L + L ++ + + + +E ++ Sbjct: 334 ---HTEVFPEMVLQMVMIGEESGKLDDMLNKIAHVYEEDVDNTVDNLGKILEPFIIVFLG 390 Query: 134 GSLPFCVSTLVYFTS 148 + V ++ Sbjct: 391 TMIGGLVVSMYLPIF 405 >gi|330831362|ref|YP_004394314.1| GspF family protein [Aeromonas veronii B565] gi|328806498|gb|AEB51697.1| GspF family protein [Aeromonas veronii B565] Length = 406 Score = 61.3 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 52/167 (31%), Gaps = 6/167 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D+ + RAG+P+ A+A + + P++ + E G LS S+ Sbjct: 65 DELVIFSRQMYALTRAGIPILRAIAGLEEGTHSKPLKRALHSLGEDLGNGRPLSSSMQAH 124 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + S I + G L EA L+ + +++ Sbjct: 125 PK-----VFSSLFVAIIHVGENTGQLEEAFLQLANYFELELETRKRIKTAMRYPSFVMIA 179 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 IG ++ +V G + + +A + + + Sbjct: 180 IGIAMVILNIMVIPVFAGMFAKFGVELPLATRILLATSHFFVNYWWL 226 Score = 39.7 bits (91), Expect = 0.17, Method: Composition-based stats. Identities = 13/132 (9%), Positives = 37/132 (28%), Gaps = 5/132 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 ++AG+P++ A+ ++ + + + G+ ES+ R Sbjct: 270 LARFARSFSMMLKAGVPLNTALTLVADAVDNAYMAGR---VRDMRAGIERGESLLRTASS 326 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 L + + + G + + L + + K +E + Sbjct: 327 SGL--FTPLVMQMIAVGEETGQVDDLLHEAAEYYEREVDYDLKSLTARIEPILIGIVAVM 384 Query: 136 LPFCVSTLVYFT 147 + + Sbjct: 385 VLILALGIFTPM 396 >gi|218782977|ref|YP_002434295.1| general secretion pathway protein F [Desulfatibacillum alkenivorans AK-01] gi|218764361|gb|ACL06827.1| General secretion pathway protein F [Desulfatibacillum alkenivorans AK-01] Length = 408 Score = 61.3 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 59/161 (36%), Gaps = 6/161 (3%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + V AGLP+ A+ ++ QS ++ V + G SL++++S + Sbjct: 75 TRQLSTLVGAGLPIVSALESLIPQSPHPVLQKVLAHVKDDIVEGKSLADALSSHPK---- 130 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 S + + G + LA LS + +N K K++A + + Sbjct: 131 -VFSPLYVNMVRAGEASGAMEIVLARLSDLTERNENTKGKIRAALAYPVIMVLVAIVVLT 189 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + V + + + + +AA+ L+ V+ Sbjct: 190 ALMVKVVPSIVSLFDDVQQALPLPTRVLIAASDFLVDYWVV 230 >gi|110834174|ref|YP_693033.1| general secretion pathway protein F [Alcanivorax borkumensis SK2] gi|110647285|emb|CAL16761.1| General secretion pathway protein F [Alcanivorax borkumensis SK2] Length = 405 Score = 61.3 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 52/155 (33%), Gaps = 9/155 (5%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + +++GLPV A++ + Q ++D + V G SL+ S R P Sbjct: 71 TRQLATLLKSGLPVEQALSAVSKQAANDRIERIMLAVRAKVREGYSLAHSFESFPRAFP- 129 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + G+L + L L+ L R + V + +I+ Sbjct: 130 ----EMYRATVAAGEQSGHLEQVLEQLADYLETRHDTGRSVAQAMIYPA---FIMVFASI 182 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + ++ F P + V + LL M Sbjct: 183 VIMLMMTFVVPKLVAVFEGRDQALPLLTRIVMAMS 217 >gi|284989266|ref|YP_003407820.1| Type II secretion system F domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284062511|gb|ADB73449.1| Type II secretion system F domain protein [Geodermatophilus obscurus DSM 43160] Length = 300 Score = 61.3 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 60/171 (35%), Gaps = 3/171 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + + AG + + + P+++E + S ++ Sbjct: 106 EALQEWVRRTSDVLAAGGGLEQTLIRSAHTAPAPIQAEVATLAARLQARWPASRALLAFA 165 Query: 74 RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + ++ G L+ L L+ L + M+ KV+A + +A+A Sbjct: 166 DDLDDAAGDLVVAALLLGAELRGPGLARVLTELAGSLTEEVTMRRKVEADRAKPRANARW 225 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + + L Y+ G M+L AA ++ ++ MR + Sbjct: 226 LLLITVAAAGLAALNG-DYLTP-YGTALGQMVLAAIAALIVGCLLWMRRLT 274 >gi|83338397|gb|ABC11882.1| PilC [Aliivibrio fischeri] Length = 412 Score = 61.3 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 59/175 (33%), Gaps = 17/175 (9%) Query: 1 MKHLIKKRTAKFLD--------DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSE 51 +K + K+ + F D + + +G+PV ++ +I + ++S Sbjct: 51 IKKIKKRSISSFEKMKHAVKRKDITLFTRQLSTMLASGVPVVQSLQLIAENNTKAEMKSI 110 Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111 +V + G LS+++S F + + G+L++A A L+ Sbjct: 111 LHQVCLSIEAGTQLSKALS-----TSCSHFDSFYIDLIATGEETGSLAQAFARLAEYREK 165 Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 +++KV + + ++ F P + N+ Sbjct: 166 SDALRSKVIKAMIYPT---MVFLVAITVTILMLTFVIPEFENIFKGFGAELPWFT 217 Score = 42.0 bits (97), Expect = 0.039, Method: Composition-based stats. Identities = 11/135 (8%), Positives = 36/135 (26%), Gaps = 5/135 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + S +GLP+ ++ + + E ++ R Sbjct: 276 AAIAKFSRTLATSFSSGLPILHSLQTTSKTAGNLYYQEAILSVQQHTAAGMPLYIAMR-- 333 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + + G L + L ++ + + + +E ++ Sbjct: 334 ---HTEVFPEMVLQMVMIGEESGKLDDMLNKIAHVYEEDVDNTVDNLGKILEPFIIVFLG 390 Query: 134 GSLPFCVSTLVYFTS 148 + V ++ Sbjct: 391 TMIGGLVVSMYLPIF 405 >gi|188993089|ref|YP_001905099.1| Type II secretory pathway component [Xanthomonas campestris pv. campestris str. B100] gi|73916935|gb|AAC27376.3| XpsF [Xanthomonas campestris] gi|167734849|emb|CAP53060.1| Type II secretory pathway component [Xanthomonas campestris pv. campestris] Length = 405 Score = 61.3 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 59/184 (32%), Gaps = 7/184 (3%) Query: 1 MKHLIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 ++ L+ R F + + + AG P+ A+++++ D RVI Sbjct: 54 LRMLL--RKKPFDNASLVQFTQQLATLIGAGQPLDRALSILMDLPEDDKSR---RVIADI 108 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + + + S + + GG++ + L L+ L + +K KV Sbjct: 109 RDTV-RGGAPLSVALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALKGKV 167 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + ++G + V L ++ ++ ++ Sbjct: 168 INALIYPAILLAVVGCALLFLLGYVVPQFAQMYESLDVALPWFTQAVLSVGLLVRDWWLV 227 Query: 180 RLMI 183 ++I Sbjct: 228 LVVI 231 >gi|225376647|ref|ZP_03753868.1| hypothetical protein ROSEINA2194_02289 [Roseburia inulinivorans DSM 16841] gi|225211530|gb|EEG93884.1| hypothetical protein ROSEINA2194_02289 [Roseburia inulinivorans DSM 16841] Length = 344 Score = 61.3 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 51/152 (33%), Gaps = 1/152 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++ KR +FP + + AG+ VS A + + E +RV+ Sbjct: 191 VNAVVSKRQEDIEREFPQVISKMTLLTVAGMEVSQAWRLASASGEGTLYKEMKRVLVDFD 250 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKV 119 +S E+ S+ + + +T I G + + L+ A+ Sbjct: 251 NNVSPVEAYSKFISRCSNTYTTKLATAIIQNISKGNSEIVTLFRQLNDESWLEHKHNARR 310 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 +++K + + ++ G+ Sbjct: 311 MGEKIQSKLLLPTMLMFGGIIILIIVPVMSGF 342 >gi|281356958|ref|ZP_06243448.1| Type II secretion system F domain protein [Victivallis vadensis ATCC BAA-548] gi|281316516|gb|EFB00540.1| Type II secretion system F domain protein [Victivallis vadensis ATCC BAA-548] Length = 292 Score = 61.3 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 63/157 (40%), Gaps = 2/157 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQ 59 + IK R + PN LD+++ SV +G + A+ ++ + DP+ E R Sbjct: 133 LSMRIKARHLSIMKALPNVLDLLMLSVESGRDIVSALRDILARRRMDPLGEELTRAFRQM 192 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR-DRKNMKAK 118 LG ++++ M + + +++ I +LG ++ + L + R R ++ K Sbjct: 193 QLGRKRADALRDMAQRVRQPDLTTTVNAIVQAEELGVSIVQLLRVQGDMQRNKRFSLAEK 252 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + LP + + + + + Sbjct: 253 LANEAAVKIIFPVVFCILPSVLIVIFGPLALQVLQMF 289 >gi|315181302|gb|ADT88216.1| Type II secretory pathway, component PulF [Vibrio furnissii NCTC 11218] Length = 407 Score = 61.3 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 19/168 (11%), Positives = 47/168 (27%), Gaps = 6/168 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + +AG+P+ ++ + ++ ++ V G LS Sbjct: 66 EVLVIFCRQLYSLTKAGVPLLRSMKGLTQNCANKQLQHALEEVCSELTNGRGLS-----A 120 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 M S + + G L EAL L+ + +++ Sbjct: 121 SMQMHAGVFSPLFVSMINVGENTGRLDEALLQLANYYEQELETRKRIKTAMRYPTFVVSF 180 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I F ++ V N + + + + + ++ Sbjct: 181 IVIAMFILNVKVIPQFASMFNRFGVELPLPTRILIGMSNFFVNYWMVM 228 Score = 44.0 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 13/135 (9%), Positives = 35/135 (25%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 +RAG+P++ ++A+ + + ++ S Sbjct: 268 RAQLSRFSRTFSLMLRAGVPLNQSLALAAEALDNKFLEARLL-----EMKAAIEAGSSIS 322 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G + E L +S + K +E + Sbjct: 323 ATAINTGIFTPLVIQMIAVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLVIV 382 Query: 133 IGSLPFCVSTLVYFT 147 G + + Sbjct: 383 AGMVLVLALGIFLPM 397 >gi|148977860|ref|ZP_01814415.1| MSHA biogenesis protein MshG [Vibrionales bacterium SWAT-3] gi|145962929|gb|EDK28200.1| MSHA biogenesis protein MshG [Vibrionales bacterium SWAT-3] Length = 407 Score = 61.3 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 17/165 (10%), Positives = 46/165 (27%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + + +AG+P+ ++ + + +++ V+ G L+ Sbjct: 67 EVLVLFCRQLYSLTKAGVPLLRSMKGLTQNCENKQLKAALEEVVAELTNGRGLA-----A 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 M + S + + G L +AL L+ + +++ Sbjct: 122 SMQMHPKVFSPLFVSMIGVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVISF 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 I F ++ V D + + + + Sbjct: 182 ILIAMFILNIKVIPQFSSMFARFGVDLPLPTRILIGMSEFFVNYW 226 Score = 40.9 bits (94), Expect = 0.080, Method: Composition-based stats. Identities = 11/132 (8%), Positives = 38/132 (28%), Gaps = 5/132 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 ++AG+P++ ++A+ + + Q + ++ + Sbjct: 272 LSRFSRTFALMLKAGVPLNQSLALSAEALDNRFLE-----LRVQAMKSAIEAGSTVSSTA 326 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + + + G + E L ++ + K +E + G Sbjct: 327 INSEIFTPLVIQMISVGEETGRIDELLLEVADYYDREVDYDLKTLTARIEPILLTIVAGM 386 Query: 136 LPFCVSTLVYFT 147 + + Sbjct: 387 VLILALGIFLPM 398 >gi|83338417|gb|ABC11885.1| PilC [Aliivibrio fischeri] Length = 412 Score = 61.3 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 58/175 (33%), Gaps = 17/175 (9%) Query: 1 MKHLIKKRTAKFLD--------DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSE 51 +K + K+ + F D + + +G+PV ++ +I + ++S Sbjct: 51 IKKIKKRSISSFEKMKHAVKRKDITLFTRQLSTMLASGVPVIQSLQLIAENNTKAEMKSI 110 Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111 +V + G LS+++S F + + G+L++A A L+ Sbjct: 111 LHQVCLSIEAGTQLSKALSS-----SCSHFDSFYIDLIATGEETGSLAQAFARLAEYREK 165 Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 +++KV + ++ F P + N+ Sbjct: 166 SDALRSKVIKAMXYPT---MVFLVAITVTILMLTFVIPEFENIFKGFGAELPWFT 217 Score = 42.0 bits (97), Expect = 0.039, Method: Composition-based stats. Identities = 11/135 (8%), Positives = 36/135 (26%), Gaps = 5/135 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + S +GLP+ ++ + + E ++ R Sbjct: 276 AAIAKFSRTLATSFSSGLPILHSLQTTSKTAGNLYYQEAILSVQQHTAAGMPLYIAMR-- 333 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + + G L + L ++ + + + +E ++ Sbjct: 334 ---HTEVFPEMVLQMVMIGEESGKLDDMLNKIAHVYEEDVDNTVDNLGKILEPFIIVFLG 390 Query: 134 GSLPFCVSTLVYFTS 148 + V ++ Sbjct: 391 TMIGGLVVSMYLPIF 405 >gi|308176986|ref|YP_003916392.1| type II secretion system protein F [Arthrobacter arilaitensis Re117] gi|307744449|emb|CBT75421.1| putative type II secretion system protein F [Arthrobacter arilaitensis Re117] Length = 313 Score = 60.9 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 66/150 (44%), Gaps = 2/150 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I +R K L FP +++ +V AG + A+ I + EF + + H Sbjct: 158 LGEQINRRARKILTQFPTVAEVLALTVGAGESTTGAIERISRICHGVIGDEFTKTLNDIH 217 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + +++ M M + ++ F I V ++ G L++ L + ++ +RD K ++ Sbjct: 218 AGTPMVQAMQHMSDRMQVGAMTRFVDAIVVATERGTPLAQVLRDQAQDVRD--ASKRELM 275 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150 ++ + + S + T+V+ PG Sbjct: 276 EVAGKREISMLVPVVFGILPLTIVFAVFPG 305 >gi|90020786|ref|YP_526613.1| MSHA biogenesis protein MshG [Saccharophagus degradans 2-40] gi|89950386|gb|ABD80401.1| type II secretion system protein [Saccharophagus degradans 2-40] Length = 406 Score = 60.9 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 18/166 (10%), Positives = 49/166 (29%), Gaps = 6/166 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISR 71 +D + ++G+P++ + + + R V E G+ LS+++ Sbjct: 66 TNDLIMFCRQMYTITKSGIPLTRGIRGLGASIRHEHFRDVLGDVAERLEAGVGLSQAMRH 125 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + + GNL E + L + + +++ + + Sbjct: 126 HPK-----VFNSLFVSMVAVGETSGNLDEIFRQIGFYLERDEETRKRIKQATRYPTFVSI 180 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 I V+ V D + + + + Sbjct: 181 AIVLAMAAVNIWVVPAFADMFAKFDADLPIVTRILIFTSNAFVNYW 226 Score = 38.9 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 16/131 (12%), Positives = 40/131 (30%), Gaps = 5/131 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 +RAG+PV+ A+A+ +P + + I S+ S + ++ + Sbjct: 277 RSFGLMLRAGVPVNQALALCAAAIDNPYIAAKIQQIRQ-----SIERGESLLRTHLQAEM 331 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + + G + L ++ + K +E + + Sbjct: 332 FTPLVLQMIAVGEESGQVEALLTEVAEFYEREVDYDLKTLTDRIEPILIIVMAAFVALLA 391 Query: 141 STLVYFTSPGY 151 + Y Sbjct: 392 VGIFLPMWSMY 402 >gi|399799|sp|P31705|GSPF_PECCC RecName: Full=General secretion pathway protein F; AltName: Full=Pectic enzymes secretion protein outF gi|42188|emb|CAA49647.1| outF [Pectobacterium carotovorum] Length = 408 Score = 60.9 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 54/169 (31%), Gaps = 9/169 (5%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLS 64 +++ D + V A +P+ +A+ + QS + V G S Sbjct: 60 RRKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHS 119 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L++++ + + G+L L L+ R+ M++++Q + Sbjct: 120 LADAMKCFP-----GSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMI 174 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + VS L+ P + I+ + L M Sbjct: 175 YP---CVLTVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMS 220 >gi|289663712|ref|ZP_06485293.1| general secretion pathway protein F [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668614|ref|ZP_06489689.1| general secretion pathway protein F [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 405 Score = 60.9 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 19/177 (10%), Positives = 51/177 (28%), Gaps = 5/177 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ L++K+ + + AG P+ A+++++ E R + Sbjct: 54 LRMLLRKKPFD-NAALVQFTQQLATLIGAGQPLDRALSILMD----LPEDEKSRRVIGDV 108 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + S + + GG++ + L L+ L + ++ KV Sbjct: 109 RDTVRGGAPLSSALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKVI 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + ++G + V L ++ ++ Sbjct: 169 NALIYPAILLAVVGCALLFLLGYVVPQFAQMYESLDVALPWFTQAVLSVGLLVRDWW 225 >gi|332528441|ref|ZP_08404433.1| type II secretion system protein [Hylemonella gracilis ATCC 19624] gi|332042120|gb|EGI78454.1| type II secretion system protein [Hylemonella gracilis ATCC 19624] Length = 328 Score = 60.9 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 19/154 (12%), Positives = 46/154 (29%), Gaps = 7/154 (4%) Query: 26 SVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFF 84 +AG+P+ ++ Q++ + + + G LS++ R R+ Sbjct: 1 MTKAGVPLLRGFDIVARGQANASLTALLLNIRTDVEAGTPLSKAFGRYPRH-----FDRL 55 Query: 85 STVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144 + + G L L L+ L ++++++A M + + V Sbjct: 56 YCSLVEAGETAGVLDAMLERLALHLEKALALRSRIRAALMYPAVVVATATLVVSIIMVFV 115 Query: 145 YFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 D G + + + Sbjct: 116 IPAFHEVFRSFGADLPGPTRVLIGM-SEFMARWW 148 >gi|308272049|emb|CBX28657.1| hypothetical protein N47_G39810 [uncultured Desulfobacterium sp.] Length = 397 Score = 60.9 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 17/168 (10%), Positives = 45/168 (26%), Gaps = 10/168 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + + AGLP+ ++ ++ + + I S Sbjct: 60 AEIHAFTAQLSVLLNAGLPLDKSLHILSRITENGRMK----TIVESLQKSVREGSSFSDA 115 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G L L LS L + ++ + + + ++ Sbjct: 116 LLKHPKVFPRLYINMIRAGEASGVLHIVLEQLSDFLESSRELREHIISAMIYPA---ILV 172 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI---MV 178 + + L+ F P + + L + G+ Sbjct: 173 ITGGITLVILMTFVLPKFSAIFTELGGALPLPTRILISVSNGLKESWW 220 Score = 36.3 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 13/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + +++G+P+ A+ + V S + + +P Sbjct: 266 FCRTLGMLLKSGVPLIQALNNAKEVIGNQVISTALGAVSKGAKEGKGIAGPLSEAKVLPP 325 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G L L ++ + K +E + + F Sbjct: 326 -----LALSMIKVGEDTGQLDGMLLKVAVVYEKSLRETVKRFVSLLEPVMILAMGLFIGF 380 Query: 139 CVSTLVYFTS 148 V +++ Sbjct: 381 IVISMLVGIF 390 >gi|298490992|ref|YP_003721169.1| Type II secretion system F domain-containing protein ['Nostoc azollae' 0708] gi|298232910|gb|ADI64046.1| Type II secretion system F domain protein ['Nostoc azollae' 0708] Length = 407 Score = 60.9 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 20/168 (11%), Positives = 60/168 (35%), Gaps = 6/168 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 V AG+ + +A++ Q + ++ + G++LS+S+ + Sbjct: 72 FSRQFAALVNAGVAIVRGLAILGEQCNNPKLKQALIEIGGDVQTGVNLSDSMGKHPDCFD 131 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++GG L E L L+++L D ++ ++++ +I ++ Sbjct: 132 G-----LYVSMVQSGEIGGVLDEVLNRLAKLLEDMARLQNQIKSAMSYPLVVGFIATAIF 186 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 ++ + + + + + +L + ++ F Sbjct: 187 VGMTVFLIPIFANIFKDIGIELPALTQFLMTCSEILRSYWSLVIIAGF 234 >gi|160931310|ref|ZP_02078710.1| hypothetical protein CLOLEP_00147 [Clostridium leptum DSM 753] gi|156869694|gb|EDO63066.1| hypothetical protein CLOLEP_00147 [Clostridium leptum DSM 753] Length = 288 Score = 60.9 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 62/173 (35%), Gaps = 1/173 (0%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ++ + I + G + AV + ++ + +++ + E+ R Sbjct: 104 LMEALDRWVRQIAAVLPQGRDIITAVRISRPRAPKMIAESVDQLVSRLDGRMEPREAFQR 163 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + E +++ + S L ++ ++ R + +V+A + + S Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 I + + + ++ L P G +L+ VA +I ++ M M Sbjct: 224 QITLVTIAMFGALLVIGRAFLAPL-ATPPGQVLVAVAIVMYVIALVQMYRMAR 275 >gi|56476318|ref|YP_157907.1| general secretion pathway protein F [Aromatoleum aromaticum EbN1] gi|56312361|emb|CAI07006.1| general secretion pathway protein F [Aromatoleum aromaticum EbN1] Length = 438 Score = 60.9 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 56/162 (34%), Gaps = 6/162 (3%) Query: 23 IVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +RAGLP+ A+ ++ + + ++++ G S+++ R Sbjct: 108 LAVMLRAGLPLDRALKVMVSMSQRPSITALLDDLLDSVKSGKGFSQALQPHQRLFG---- 163 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F + + GG L E L+ L+ L + ++ V + + + F + Sbjct: 164 -EFYINMVRSGEAGGQLGEVLSRLAEHLERTRALRESVVSALIYPAILVLVAAVSVFLML 222 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 V N + + V A ++ + ++ Sbjct: 223 AFVVPQFESLFNDMGEALPLPTRIIVGAGHLVADWGWLMALV 264 >gi|323935156|gb|EGB31523.1| bacterial type II secretion system protein F containing protein [Escherichia coli E1520] Length = 400 Score = 60.9 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 54/182 (29%), Gaps = 22/182 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + + + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCVELARQQKAQHQLTDKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + G +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGFLLAIANKLLM 235 Query: 180 RL 181 R Sbjct: 236 RR 237 >gi|260778157|ref|ZP_05887050.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio coralliilyticus ATCC BAA-450] gi|260606170|gb|EEX32455.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio coralliilyticus ATCC BAA-450] Length = 284 Score = 60.9 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 61/142 (42%), Gaps = 3/142 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 ++ + + + P+ALD++V V +GL + + V+ + S + E+ Sbjct: 123 LEWRVNQIRQEISKVAPDALDLMVVCVASGLTLENTFRVVGEEMTSVSPALAREWALTAT 182 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + S +++ + + + L +++ +S Q G LS+AL+ ++ R + + Sbjct: 183 EMSVLDSPQQALQNLDQRLELPDINNMVVTMSQALQFGTPLSQALSLIASDSRQYQLLDL 242 Query: 118 KVQALSMEAKASAWIIGSLPFC 139 + + AK S ++ + Sbjct: 243 EEWVGKIPAKMSFPLVVFIMLP 264 >gi|319782178|ref|YP_004141654.1| type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168066|gb|ADV11604.1| Type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 316 Score = 60.9 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 60/149 (40%), Gaps = 3/149 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + + FP+ +D+++ AG+ + AV + + + + + Sbjct: 157 LDRFENSQKQIYRRAFPDFMDMMITCADAGMSLEGAVERVSHEMAATHKWLGIQLSIMNL 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G L E++ + + L E + + +LG +L++AL S +R ++ + A Sbjct: 217 QLRAGKPLREALRELADRIGLDEARALAVLFRQSEELGTSLTDALRVYSAEMRGQRILSA 276 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF 146 + +A S+ K + + V ++ Sbjct: 277 EERANSLPVKMMIPLGLCIFPVVMMVIML 305 >gi|91228621|ref|ZP_01262538.1| type IV pilin biogenesis protein PilC [Vibrio alginolyticus 12G01] gi|91187804|gb|EAS74119.1| type IV pilin biogenesis protein PilC [Vibrio alginolyticus 12G01] Length = 407 Score = 60.9 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 50/161 (31%), Gaps = 12/161 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + H +K R D I + G+P+ A+ ++ ++S V Sbjct: 60 LSHRVKAR------DITVFTRQISTMLITGVPLVQALKLVSENHKKAEMKSILMSVTRAV 113 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G +S+++ + + + GNL+E L+ + ++AKV Sbjct: 114 EAGTPMSKAMRTASEHFDPLYTD-----LIATGEQSGNLAEVFERLATYREKNEQLRAKV 168 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 + + + F + T V D Sbjct: 169 IKALIYPAMVVLVALGVSFIMLTKVIPEFEKMFVGFGADLP 209 Score = 35.1 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 13/136 (9%), Positives = 37/136 (27%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72 + S AG+P+ ++ S + V G+ + ++ Sbjct: 271 AAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNLHYQLAIEEVYRDTAAGMPMYVAMRN- 329 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G L + L ++ I + + +E ++ Sbjct: 330 -----CNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFL 384 Query: 133 IGSLPFCVSTLVYFTS 148 + V+ + Sbjct: 385 GIVVGGLVTAMYLPIF 400 >gi|256389283|ref|YP_003110847.1| integral membrane protein [Catenulispora acidiphila DSM 44928] gi|256355509|gb|ACU69006.1| integral membrane protein [Catenulispora acidiphila DSM 44928] Length = 270 Score = 60.9 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 8/183 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + +++R + ++ I + AG +A+ + + + Sbjct: 90 RLAVERRQTEIIE----LCVTICSELHAGREAREALRDAAVGACPDLAVH----LVGPLG 141 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 ++ R P +E ++ G ++ A+ LS LR + + ++ A Sbjct: 142 TGDDVVTVLRTAAGTPGREALAALAACWQVAEGGAGMTAAIGELSDGLRAERAQRRELDA 201 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + SA ++ LP + + +L++ G L + AF+L G+M M Sbjct: 202 ELAGIRTSARLLAMLPVVGLIIGSGMGLSPIPMLLHTGVGETCLVLGIAFVLGGVMWMDR 261 Query: 182 MIN 184 + Sbjct: 262 IAR 264 >gi|147677471|ref|YP_001211686.1| type II secretory pathway, component PulF [Pelotomaculum thermopropionicum SI] gi|146273568|dbj|BAF59317.1| type II secretory pathway, component PulF [Pelotomaculum thermopropionicum SI] Length = 404 Score = 60.9 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 22/165 (13%), Positives = 55/165 (33%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRM 72 + + ++AG+P+ A+ ++ Q+ +R + G + SE++ Sbjct: 68 RNMSILCRQLATMLQAGVPLLQALHILTRQTGHKGLRDSLSVITRLLEEGRTFSEALRMF 127 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P ++ ++ G L AL NL+ N+ K+++ + Sbjct: 128 PAIYPG-----IMVSMAEAGEVTGRLDYALENLAGHFEREHNISEKIKSAMVYPAVLVAT 182 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + V LV + ++ L + ++ + Sbjct: 183 GIAAVSIVFILVVPSFKAMLDTLGVELPAVTRAVMSVSAFCAANW 227 >gi|302329927|gb|ADL20121.1| Putative type II secretion system protein [Corynebacterium pseudotuberculosis 1002] gi|308275611|gb|ADO25510.1| Putative type II secretion system protein [Corynebacterium pseudotuberculosis I19] Length = 266 Score = 60.9 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 67/182 (36%), Gaps = 1/182 (0%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K ++ + ++ AL + +RAG+ S A+ + + + Sbjct: 82 KRRLEASQRREQEEISTALGSLAGDLRAGVEASVALENVAQNLPESALKDTLMAASRSSR 141 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + + + R + + + + + + G L+ L L + + QA Sbjct: 142 IGGSASAYWQQ-RALAIHGIEKITHAWRLSERYGIALAPLLEKNRASLDEDLRHAERTQA 200 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 AKA+A+I+ +LPF L + L + G +LL + + +G + + Sbjct: 201 ALQGAKATAYILTALPFVGILLGRGMGVNALGFLFHTRIGAVLLILGTLLVCVGNLWSQA 260 Query: 182 MI 183 ++ Sbjct: 261 IM 262 >gi|148976302|ref|ZP_01813026.1| Flp pilus assembly protein TadC [Vibrionales bacterium SWAT-3] gi|145964396|gb|EDK29651.1| Flp pilus assembly protein TadC [Vibrionales bacterium SWAT-3] Length = 283 Score = 60.9 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 62/155 (40%), Gaps = 6/155 (3%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSLSE 67 + P+A+D++V V +GL + + + S + E+ + S Sbjct: 132 QISRVVPDAIDLMVICVASGLTLESVFRCVGEEMRSISPALSREWLLTATEISVLDSPQT 191 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +++ + + + L +++ T ++ Q G L++AL ++ R ++ + + AK Sbjct: 192 ALNNLDKRVQLPDINNVVTTMNQALQYGTPLADALKLIASDSRQYYFLELEEWVGKIPAK 251 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162 S ++ + V ++ M L+ G Sbjct: 252 MSFPLVVFIMLPVVAIII---APIMLNLMQTLGGI 283 >gi|294086084|ref|YP_003552844.1| type II secretion system PilC [Candidatus Puniceispirillum marinum IMCC1322] gi|292665659|gb|ADE40760.1| Type II Secretion System PilC [Candidatus Puniceispirillum marinum IMCC1322] Length = 409 Score = 60.9 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 60/149 (40%), Gaps = 6/149 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + I +RAGLP+ +A+ ++ GQSS+ ++ +I + G SLS+S Sbjct: 67 KEIMIFTKKIATMMRAGLPIVEAMILVAGQSSNANMKRVSTDMITKLNNGASLSQSFRHH 126 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R+ + ++ G L L L +L ++ +KA +++ I Sbjct: 127 KRH-----FDAVYLNMVEAGEISGKLDTFLDRLVEMLEKQQAIKAGIKSALFYPVTLVVI 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 S+ + + T V T L + G Sbjct: 182 TISISYFMLTNVVPTFQDMYEGLGAELPG 210 >gi|258510316|ref|YP_003183750.1| Type II secretion system F domain-containing protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477042|gb|ACV57361.1| Type II secretion system F domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 412 Score = 60.9 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 57/162 (35%), Gaps = 9/162 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 +DF VRAG+P+ A+ V+ Q P++ V G +L ES++ Sbjct: 67 SEDFVPFCRQFATLVRAGVPLVPALQVLEEQLRKGPLKKAVAEVAAKVEGGTALWESLAE 126 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + + G+L E L + +R ++ +K+++ M Sbjct: 127 YPKVFPP-----MFVQMVRAGEASGSLEEVLESTARFEEGQRETISKIKSALMYPAL--- 178 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + L+ P +++V + L F Sbjct: 179 VSVMSVLVAGFLMINVIPSFVSVFASMHVTLPLPTRIVLFSA 220 >gi|198283215|ref|YP_002219536.1| type II secretion system protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665636|ref|YP_002425446.1| type IV pilus biogenesis protein PilC [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247736|gb|ACH83329.1| type II secretion system protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517849|gb|ACK78435.1| type IV pilus biogenesis protein PilC [Acidithiobacillus ferrooxidans ATCC 23270] Length = 419 Score = 60.9 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 18/174 (10%), Positives = 57/174 (32%), Gaps = 6/174 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 + + + AG+P+ + ++V +S ++ + +++ G SLS++++ Sbjct: 75 EAQLVVMVRQLSTMINAGVPIVQSFELLVSATSGAGMKKLLKGILKHLKEGESLSQAMAH 134 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + GG L L L+ + KV++ A Sbjct: 135 FPK-----YFDRLFVSLVAAGEQGGILDTILLRLAEYREKTLALNKKVKSAMFYPAAIIT 189 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 ++ + + V + + + + + + +++ Sbjct: 190 VMVVVVVILMIFVIPVFSQLFSSFGATLPLLTQVVINISDWMKSHWYIVVLVPI 243 Score = 35.9 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 11/130 (8%), Positives = 34/130 (26%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + AG+P+ +A+ + S + + + + P+ Sbjct: 285 FMRTLSTMQGAGVPIMEALGTLSKVSGNVIIERSVLAARDDVATGGRITTQLKADGVFPI 344 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 +T + + G + ++ + + ME + + Sbjct: 345 -----MATQMLAIGEETGAIEVMSGKVADFYENEVEEAVSRLSTLMEPMIMVVLGIIVGT 399 Query: 139 CVSTLVYFTS 148 V + Sbjct: 400 LVVAMYLPIF 409 >gi|167399416|ref|ZP_02304940.1| type II secretion system protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167051920|gb|EDR63328.1| type II secretion system protein [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 205 Score = 60.9 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 4/157 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 +K+ + KRT L P +DI V++G+ + +++ + + + Sbjct: 45 IKNALTKRTNNLLKSLPFFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTK 104 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + L +I + Y P E+ F + + G + E L +LS+ +R+ + + + Sbjct: 105 RAEINGLENAIKELQYYSPAIEMKMFCSTLQYSISFGSTVYEQLTHLSQDMREMQLLMTE 164 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + K + + + LV SP + +L Sbjct: 165 ESISKLSTKLTLPLFLFILIPFVLLV--ISPSILELL 199 >gi|261856881|ref|YP_003264164.1| type II secretion system F domain protein [Halothiobacillus neapolitanus c2] gi|261837350|gb|ACX97117.1| Type II secretion system F domain protein [Halothiobacillus neapolitanus c2] Length = 298 Score = 60.9 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 1/135 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQ 59 + K R + D P LD IV +V AGL ++ + P+ EFRR++ Sbjct: 140 LTERRKHRQRLVIKDLPVFLDFIVMAVEAGLNITGGIEQATLKGPKGPLAQEFRRLLRDM 199 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 GL+ +E++ RM M + ++S F+ + ++G +L +L + R+ + ++A+ Sbjct: 200 RSGLARAEALKRMAERMDMPQISSFTGTLIQADRVGASLGASLRVQADQRREERFLRAEK 259 Query: 120 QALSMEAKASAWIIG 134 AL K ++ Sbjct: 260 LALEAPVKMMLPLVM 274 >gi|86157112|ref|YP_463897.1| general secretion pathway protein F [Anaeromyxobacter dehalogenans 2CP-C] gi|85773623|gb|ABC80460.1| General secretion pathway protein F [Anaeromyxobacter dehalogenans 2CP-C] Length = 409 Score = 60.9 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 24/165 (14%), Positives = 57/165 (34%), Gaps = 6/165 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 + A + V AG+P+ +A+ +V Q + ++ V + + G +L+++++ Sbjct: 70 NLAIATRQLSVLVGAGIPLVEALTALVDQVEHERLKRVLGDVKQRVNEGAALADALAAHP 129 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R S + + G L L L+ + +++K+ A I Sbjct: 130 R-----VFSTLYVNMIRAGEHSGALEVVLVRLADFTESQARLRSKIMGTMAYPAAMMVIG 184 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + T+V + +AA+ + Sbjct: 185 SVILGVLFTVVIPKITKIFEDTKAQLPWNTRALIAASHFVADYWW 229 Score = 37.4 bits (85), Expect = 0.90, Method: Composition-based stats. Identities = 14/133 (10%), Positives = 39/133 (29%), Gaps = 5/133 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + +R+G+P+ A+ ++ + ++ + + Sbjct: 273 AISRFARTLSTLLRSGVPLLTAMEIVKNIVGNTRLADVIDQARDAIREGESIAAPLK--- 329 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 E + + G L E L N+++ D+ +E + Sbjct: 330 --RSGEFPPLVYHMVAIGERSGALEEMLGNVAKAYEDQVETTVTALTSLLEPLMIVAMGV 387 Query: 135 SLPFCVSTLVYFT 147 + F V +++ Sbjct: 388 VVAFIVFSVLLPI 400 >gi|289643196|ref|ZP_06475323.1| type II secretion system protein [Frankia symbiont of Datisca glomerata] gi|289506967|gb|EFD27939.1| type II secretion system protein [Frankia symbiont of Datisca glomerata] Length = 349 Score = 60.9 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 65/173 (37%), Gaps = 31/173 (17%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++R A+ ++D P ALD+I + AG P+ A+ ++ G P+ +E V + LG S Sbjct: 164 AQRRQARLVEDLPLALDLIAACLTAGAPIVAALDIVAGAVGGPLGTELGMVSRSLRLGAS 223 Query: 65 LSESISRMVRYMPL-------------------------------QEVSFFSTVISVQSQ 93 ++E+ R++ P E++ F+ + + Sbjct: 224 MAEACGRLLGPEPSSSRPAAKRWTRLVPVGPAPGGLGRPTATAEAHEIAAFARALHRSEE 283 Query: 94 LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 G L+ AL L+ R R+ +A A A A + L Sbjct: 284 SGARLAAALGRLADQTRARRQERALTAARRAGVTAVAPLGLCFLPAFVALGVV 336 >gi|218557044|ref|YP_002389957.1| type IV pilin biogenesis protein [Escherichia coli S88] gi|218363813|emb|CAR01473.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli S88] Length = 400 Score = 60.9 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 22/181 (12%), Positives = 55/181 (30%), Gaps = 22/181 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGVAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + G +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANKLLM 235 Query: 180 R 180 R Sbjct: 236 R 236 >gi|119505083|ref|ZP_01627159.1| TonB-dependent siderophore receptor [marine gamma proteobacterium HTCC2080] gi|119459065|gb|EAW40164.1| TonB-dependent siderophore receptor [marine gamma proteobacterium HTCC2080] Length = 406 Score = 60.9 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 21/157 (13%), Positives = 53/157 (33%), Gaps = 9/157 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 + + V + LP+ + + Q+ ++S V G +L+ +++ Sbjct: 68 ELALITRQLATLVASALPLDECLQAAAEQTRKPSIKSILLEVRSRVSEGYTLASGMAQYP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G L+ L L+ +R+ K++ + ++ Sbjct: 128 QAFG-----EMYRAMVHAGEQAGQLAPVLEQLAEYTENRQLTAQKLKLALIYPF---VLM 179 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 G V+ L+ F P + + + + L V Sbjct: 180 GVAVSVVAALMVFVVPELVGIFTHTKKELPPLTVGLI 216 >gi|42523100|ref|NP_968480.1| general secretion pathway protein F [Bdellovibrio bacteriovorus HD100] gi|39575305|emb|CAE79473.1| general secretion pathway protein F [Bdellovibrio bacteriovorus HD100] Length = 405 Score = 60.9 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 20/159 (12%), Positives = 48/159 (30%), Gaps = 8/159 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D + ++A +P+ DA+ + Q +P +E + ++ S Sbjct: 65 KDLSLMTRQLATLIKANIPLVDALTAVSEQVENPTLAE---ALADCKNMVN-EGSTLHKA 120 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + ++ G+L L L+ + +++AKV + + Sbjct: 121 MLKYPNVFTTIYVSMVEAGEMSGSLDVILMRLAEFTEAQADLRAKVSSAMTYPVIMLVVT 180 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 L + + M + L A + Sbjct: 181 FGLMGFLFIFLIPK----MVTVFESAPQLQLPWYTVALI 215 >gi|119961380|ref|YP_948378.1| type II secretion system protein subunit F [Arthrobacter aurescens TC1] gi|119948239|gb|ABM07150.1| putative type II secretion system protein F domain [Arthrobacter aurescens TC1] Length = 313 Score = 60.9 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 59/143 (41%), Gaps = 6/143 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + IK+R ++ L +FP+ +++ +V AG A+ + S+ + +EF ++ Sbjct: 158 LGLRIKRRESRMLSEFPSLAELMALAVAAGESAMGAMDRVSRSSNGELSAEFATILADTR 217 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L+E++ L + F + V + G L++ L + +RD + Sbjct: 218 SGKPLTEALQAFSSRSELPPLVRFIDGLMVAVERGTPLADVLRAQAADVRDAA------K 271 Query: 121 ALSMEAKASAWIIGSLPFCVSTL 143 ME+ I +P L Sbjct: 272 RDLMESAGRKEIAMMVPLVFGVL 294 >gi|331659242|ref|ZP_08360184.1| general secretion pathway protein F [Escherichia coli TA206] gi|331053824|gb|EGI25853.1| general secretion pathway protein F [Escherichia coli TA206] Length = 407 Score = 60.9 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 57/167 (34%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----DFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + ML+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDALQASGVYW 229 >gi|261209942|ref|ZP_05924242.1| MSHA biogenesis protein MshG [Vibrio sp. RC341] gi|260841007|gb|EEX67539.1| MSHA biogenesis protein MshG [Vibrio sp. RC341] Length = 408 Score = 60.9 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 18/165 (10%), Positives = 47/165 (28%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + + +AG+P+ ++ + + +++ V G +LS Sbjct: 67 EVLVIFCRQMFSLTKAGVPLLRSMRGLTQNCHNKQLKAALESVCNELTNGRNLS-----A 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 M S + + G L +AL L+ + +++ Sbjct: 122 SMQMHPGVFSPLFVSMIQVGENTGRLDQALLQLANYYEQEVETRKRIKTAMRYPTFVISF 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + F ++ V + D + +A + + Sbjct: 182 VVMAMFILNVKVIPQFTSMFSRFGVDLPLPTRILIATSDFFVNYW 226 Score = 40.5 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 17/143 (11%), Positives = 42/143 (29%), Gaps = 6/143 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + AG+P++ ++A+ + E R + + +S S + + Sbjct: 269 RAQLSRFSRTFSLMLSAGVPLNQSLALSAEAIDNKFL-EQRILEMKSQIESGVSISTTAV 327 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G + E L +S + K +E ++ Sbjct: 328 NAKIFTP----LVIQMVSVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPVLLVFV 383 Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155 + + G M+ L Sbjct: 384 AAMVLVLALGIFLPMW-GMMDAL 405 >gi|288930650|ref|YP_003434710.1| type II secretion system F domain protein [Ferroglobus placidus DSM 10642] gi|288892898|gb|ADC64435.1| Type II secretion system F domain protein [Ferroglobus placidus DSM 10642] Length = 633 Score = 60.9 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 66/157 (42%), Gaps = 4/157 (2%) Query: 5 IKKRTAKFLDDF-PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 IKKR P L+ + + +G+P+ A+A+I + ++ E ++ + Sbjct: 413 IKKRQLNTALKLTPVFLNKLASANESGMPIHKAIAMIAKTETSALKKEIEKIKLDLDWKI 472 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 SL +++ R + + E++ T++ + GN++E L ++ + + ++ + Sbjct: 473 SLEDALIRFANRIRVFELTRTITLLVEALRSTGNVTEVLRISAKDASNAELLRRERLGNM 532 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 II F +VY S +++VL Sbjct: 533 ---FMYVIIIYISFFVFIGIVYIISTTFLSVLAESTA 566 Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 65/186 (34%), Gaps = 7/186 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQH 60 +I R +K P+A+ + R G+ + D I V EF +++ Sbjct: 127 FIISDRKSKINRLLPHAVMFMYSLSRGGMGIIDIFKSIAAYEDVYSEVSKEFAKIVRDIE 186 Query: 61 -LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 L L +++ + P + + + GG+++ L + +R + K Sbjct: 187 ILSKDLRTALTEAIENTPSENLKDLLHGLITVIDSGGDVTSYLEERAEFYLERARQEQKS 246 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + A ++I + + ++ + ++ ML + + IG + Sbjct: 247 FLDFLSLMAESYITAFVAGPLFLIII----QTVMAVMGQGDELMLYSIIYLIIPIGSFMF 302 Query: 180 RLMINF 185 ++I Sbjct: 303 AMVIKL 308 >gi|87301567|ref|ZP_01084407.1| pili biogenesis protein [Synechococcus sp. WH 5701] gi|87283784|gb|EAQ75738.1| pili biogenesis protein [Synechococcus sp. WH 5701] Length = 466 Score = 60.9 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 58/170 (34%), Gaps = 14/170 (8%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + V +G+P+ + ++ Q R V G+SL ++ R + Sbjct: 131 FASKLSALVDSGVPIVRGLTLVAKQQKKPIFRQALEAVASDVSQGVSLGVAMRRWPK--- 187 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + +LGG L E L L+ +L ++ +++ I ++ Sbjct: 188 --VFDRITIAMVEAGELGGVLDETLKRLALLLEQNAKLQNQIKGALAYPVIVLLIAIAVF 245 Query: 138 FCVSTLVYFTSPGYMNVLIND-PRGHMLLG-------VAAAFMLIGIMVM 179 ++ + T L + P ++ A + LI +++ Sbjct: 246 LGMTIFLIPTFADIFEQLGAELPVFTQMMVNLSALLRSAFSLFLIAFVIL 295 Score = 37.8 bits (86), Expect = 0.80, Method: Composition-based stats. Identities = 13/136 (9%), Positives = 40/136 (29%), Gaps = 7/136 (5%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRY 75 +AG+P+ ++ ++ S + + G+ +S ++SR Sbjct: 333 AQFCRTFSSLSKAGVPILMSLEIVRDTSRNSIFADTIEDCRVEIQDGIPVSVALSR---- 388 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + G + L+ ++ D + K +E + Sbjct: 389 --KNVFPEMALSMLAIGEETGEMDAMLSKVADFYEDEVEVAVKALTSLLEPIMIVIVGII 446 Query: 136 LPFCVSTLVYFTSPGY 151 + + + + Sbjct: 447 VGAILVAMYLPMFSVF 462 >gi|86609588|ref|YP_478350.1| type IV pilus assembly protein PilC [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558130|gb|ABD03087.1| type IV pilus assembly protein PilC [Synechococcus sp. JA-2-3B'a(2-13)] Length = 408 Score = 60.9 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 20/143 (13%), Positives = 51/143 (35%), Gaps = 6/143 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+ + ++ ++ Q+ + ++ R + G +LS+SI Sbjct: 72 FSRQFAALINAGVSMVRSLTIMEEQTGNPKLKKYLRAIRAEVEAGKNLSDSIRPYPDAFD 131 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++GG L E L L+++L D ++ ++++ + + Sbjct: 132 G-----LYCSMVQAGEVGGVLDEVLNRLAKLLEDMDRLQKQIKSAMTYPVVVTILAVLIF 186 Query: 138 FCVSTLVYFTSPGYMNVLINDPR 160 + + T N L + Sbjct: 187 LGMVLFILPTFESIYNDLGGELP 209 Score = 36.3 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 34/130 (26%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 R+G+PV ++ ++ S + V + S+SE Sbjct: 277 FCRTFGALTRSGVPVLTSLEIVRDTSGNQVVANAIDAARQ-----SISEGGQIAPALDKA 331 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + + G L L + + +E + G + Sbjct: 332 KVFPVMAIQMISVGEETGELDAMLMKTADFYELEVEEAVRALTSLLEPLMIVILGGMVGC 391 Query: 139 CVSTLVYFTS 148 + + Sbjct: 392 IIVAMYLPMF 401 >gi|162147495|ref|YP_001601956.1| type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786072|emb|CAP55654.1| putative type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] Length = 313 Score = 60.9 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 58/147 (39%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +K + P+ALD++V AGLP+ A+ + + + V +EFR + Sbjct: 153 VKRMQAHYLRNVDQGIPDALDMLVICAEAGLPIEAAIGRVGREMTAVNRSVANEFRLTAQ 212 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + L + + ++ Q G ++++AL LS +R + Sbjct: 213 EMGVASDRRDVFLHFGERTNLSSMRRIGSALNQTLQAGSSVTQALRVLSVEMRKDALTEY 272 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + +A + + +I + V +V Sbjct: 273 EARAARLPVLLTLPMILFILPVVFLVV 299 >gi|220936426|ref|YP_002515325.1| general secretory pathway protein F [Thioalkalivibrio sp. HL-EbGR7] gi|219997736|gb|ACL74338.1| general secretory pathway protein F [Thioalkalivibrio sp. HL-EbGR7] Length = 406 Score = 60.9 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 18/160 (11%), Positives = 46/160 (28%), Gaps = 6/160 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + +AG+P+ + + S + + R V++ G L+ +++R Sbjct: 73 RQLYALTKAGVPIIRGLNQLADASKNERMSKALREVVDDLESGRDLAGAMARHPDI---- 128 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 S + + G L +AL + + + +++ I F Sbjct: 129 -FSPLFVSMVQVGEASGRLDDALLRVFNYMERERQTVNQIRTALRYPTFVVIAISVAIFI 187 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + V D + + + + Sbjct: 188 LMAYVIPVFAQVFERFDLDLPLATRAIITVSNFVSAWWWL 227 >gi|319795783|ref|YP_004157423.1| type II secretion system f domain [Variovorax paradoxus EPS] gi|315598246|gb|ADU39312.1| Type II secretion system F domain [Variovorax paradoxus EPS] Length = 316 Score = 60.9 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 60/158 (37%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR---SEFRRVIE 57 + R + + P +D++ GL + ++ ++ S +R E Sbjct: 153 LGQFAAARRERVAQELPLFIDLLRLLQGVGLSLDQSLQIMANDFSHVLRVLGYELAFANR 212 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + S+ R+ + + +++ + GG + E L S LR+ + + Sbjct: 213 QYSQGRTREHSLQRLATLHKNENLGGLVSLLVQVDRHGGAIQEPLRIFSDRLREHRRSEM 272 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 K + + K + ++ +L + + PG++ ++ Sbjct: 273 KDRIGKITVKMTGVMVTTLLPALI--IVTAGPGFIAII 308 >gi|331661478|ref|ZP_08362402.1| protein transport protein HofC [Escherichia coli TA143] gi|331061393|gb|EGI33356.1| protein transport protein HofC [Escherichia coli TA143] Length = 400 Score = 60.9 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 22/181 (12%), Positives = 55/181 (30%), Gaps = 22/181 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGVAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLADKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + G +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPVLTQGIMTLASFSGEWGWLLVLFGFLLAIANKLLM 235 Query: 180 R 180 R Sbjct: 236 R 236 >gi|227497416|ref|ZP_03927648.1| possible type II secretion system protein [Actinomyces urogenitalis DSM 15434] gi|226833092|gb|EEH65475.1| possible type II secretion system protein [Actinomyces urogenitalis DSM 15434] Length = 218 Score = 60.9 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 72/178 (40%), Gaps = 4/178 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++H ++ R + ++ +P A+D++ ++ G+ + +A++ + +R FR + Sbjct: 30 LRHGVEVRRRRQVESWPEAVDLLGAALSQGVGLPEALSGLAEAGPPALRPAFRAFALSYT 89 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKV 119 L L E++ R+ + ++ + Q L+ AL LS LR + + + Sbjct: 90 LSGILDEALDRLDGELDDWVGEHLMALVRLAQETGTAGLATALHELSATLRVERASRRLM 149 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + ++ +P+ V ++ + + LL A GI+ Sbjct: 150 VSSLAWGARGSCLLAFVPWLVIGALHCSVVHLTPHASST---RQLLAGACLSGAAGIL 204 >gi|258593222|emb|CBE69561.1| general secretory pathway component, cryptic [NC10 bacterium 'Dutch sediment'] Length = 408 Score = 60.9 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 18/162 (11%), Positives = 54/162 (33%), Gaps = 6/162 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+ + ++A+++ + + R ++ G S ++ +++ R Sbjct: 74 FTQQLATLLEAGMELDRSLAILLDLTDNQRFRSILRSILTDIQAGNSFADGLAKHPRL-- 131 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 S + + G L L+ L+ + K ++ +V + + ++ G Sbjct: 132 ---FSRLYINMVKAGEASGVLEVILSRLAGFMERSKAVRDEVTSALIYPILLLFVGGGAV 188 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + V + + +A + G + Sbjct: 189 VVMMNFVIPRFAQIFSDTKQLMPLPTRILLAISAFTTGYWWV 230 >gi|289524034|ref|ZP_06440888.1| pilin biogenesis protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502690|gb|EFD23854.1| pilin biogenesis protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 406 Score = 60.9 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 57/162 (35%), Gaps = 10/162 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + AG+ + A+ ++ Q+ + +E R + + IS Sbjct: 70 FFRQLATMLDAGITLGMALDMLAEQTENKRFAEAIR-----EVKTMVDRGISLSAAMATK 124 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 +E S I+ + GG L +L L+ L + ++ K+ + S ++G Sbjct: 125 REFSKLMVAIARAGEEGGVLESSLDRLATFLERQDELRKKIISASTYPA---VVMGFALM 181 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLG--VAAAFMLIGIMV 178 V LV P + ++ ++ L + M + Sbjct: 182 VVFILVTVIMPRFTSIFMDLDIRLPLPTRIILGFSMWMSHFW 223 Score = 34.3 bits (77), Expect = 7.5, Method: Composition-based stats. Identities = 15/142 (10%), Positives = 41/142 (28%), Gaps = 5/142 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 V+AG+P+ A+ + S + + S+ + Sbjct: 269 LARTFRTFAALVQAGVPILSALEMTADVSGN---AVVEDAFAQMSDQAKRGMSMGETAKK 325 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 ++ + + + + G L + + ++ + K K +E ++ G Sbjct: 326 --IKVIPPLAAHMITVGEQTGRLEDMVDKVADWFEFELDEKIKRLTSIIEPVLIVFVGGV 383 Query: 136 LPFCVSTLVYFTSPGYMNVLIN 157 + V + +L Sbjct: 384 VALVVFAVFMPIIGSIQGLLAG 405 >gi|288919650|ref|ZP_06413978.1| type II secretion system protein [Frankia sp. EUN1f] gi|288348939|gb|EFC83188.1| type II secretion system protein [Frankia sp. EUN1f] Length = 367 Score = 60.9 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 62/157 (39%), Gaps = 6/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R + L +FP +++ +V AG A+ + + + +E R + Sbjct: 211 LTRAIREREDRMLMEFPTVAELLALAVTAGESAIGALERVSRLTRGELGTELRLALADAR 270 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +L +++ + L ++ F ++V + G L++ L + +R+ + Sbjct: 271 AGATLVQALEGIAARTSLPPLTRFVDGMAVAIERGTPLADVLRAQAVDVREAG------K 324 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 +EA I +P L + L++ Sbjct: 325 RQLLEAGGRKEIAMMIPVVFLILPTTVIFAFYPALVS 361 >gi|300857635|ref|YP_003782618.1| hypothetical protein cpfrc_00218 [Corynebacterium pseudotuberculosis FRC41] gi|300685089|gb|ADK28011.1| putative membrane protein [Corynebacterium pseudotuberculosis FRC41] Length = 256 Score = 60.9 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 67/182 (36%), Gaps = 1/182 (0%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K ++ + ++ AL + +RAG+ S A+ + + + Sbjct: 72 KRRLEASQRREQEEISTALGSLAGDLRAGVEASVALENVAQNLPESALKDTLMAASRSSR 131 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + + + R + + + + + + G L+ L L + + QA Sbjct: 132 IGGSASAYWQQ-RALAIHGIEKITHAWRLSERYGIALAPLLEKNRASLDEDLRHAERTQA 190 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 AKA+A+I+ +LPF L + L + G +LL + + +G + + Sbjct: 191 ALQGAKATAYILTALPFVGILLGRGMGVNALGFLFHTRIGAVLLILGTLLVCVGNLWSQA 250 Query: 182 MI 183 ++ Sbjct: 251 IM 252 >gi|328759517|gb|EGF73126.1| membrane spanning protein [Propionibacterium acnes HL099PA1] Length = 288 Score = 60.9 bits (146), Expect = 9e-08, Method: Composition-based stats. Identities = 22/173 (12%), Positives = 61/173 (35%), Gaps = 1/173 (0%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ++ + + + G + AV + ++ + +++ + E+ R Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKMIAESVDQLVSRLDGRMEPREAFQR 163 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + E +++ + S L ++ ++ R + +V+A + + S Sbjct: 164 MADKLDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 I + + + ++ L P G +L+ VA + ++ M M Sbjct: 224 QITLVTIAMFGALLVIGRAFLAPL-ATPPGQILVAVAVVMYVTALVQMYRMAR 275 >gi|308048084|ref|YP_003911650.1| Type II secretion system F domain protein [Ferrimonas balearica DSM 9799] gi|307630274|gb|ADN74576.1| Type II secretion system F domain protein [Ferrimonas balearica DSM 9799] Length = 419 Score = 60.9 bits (146), Expect = 9e-08, Method: Composition-based stats. Identities = 27/188 (14%), Positives = 60/188 (31%), Gaps = 16/188 (8%) Query: 8 RTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65 R AK D I + AG+P+ A+ ++ + VR ++ G L Sbjct: 72 RKAKIRGMDIAVVTRQIATMLLAGVPLVTAIEMVGRSHENDAVRKLLAIILAEVQSGTPL 131 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S+++ Q + + G L + ++ + +K+K++ Sbjct: 132 SKALR-----PHRQYFDDLYCDLVAAGEHSGTLDQVFDRIATYREKSEALKSKIKKAMFY 186 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA---------FMLIGI 176 A + S+ + V N + + + + F+ + Sbjct: 187 PTAVVVVAISVTVLLLLFVVPQFEAIFNDFGAELPIFTQIVINLSRFLSESWYYFLAAIV 246 Query: 177 MVMRLMIN 184 +V+ L I Sbjct: 247 IVIWLFIR 254 >gi|126665140|ref|ZP_01736123.1| Type II secretory pathway, component PulF [Marinobacter sp. ELB17] gi|126630510|gb|EBA01125.1| Type II secretory pathway, component PulF [Marinobacter sp. ELB17] Length = 406 Score = 60.9 bits (146), Expect = 9e-08, Method: Composition-based stats. Identities = 20/168 (11%), Positives = 52/168 (30%), Gaps = 8/168 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + ++AG+P+ + ++ + ++ V G S + S+ + R Sbjct: 71 LTRQLATMMKAGVPLVQSFDIVADGLENRGLQDLVMSVRNDIASGNSFAGSLRKHPRQ-- 128 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G L + L ++ + + +K KV+ A + + Sbjct: 129 ---FDDLYCNLVDSGEKAGALEKMLDRIATYMEKTEILKKKVKKAMTYPIAVVVVAIVVT 185 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA--FMLIGIMVMRLMI 183 + V N + + V + +V+ +I Sbjct: 186 AILLVKVVPQFESLFNGFGAELPVFTQMVVRLSEWMQTWWFVVLLGII 233 Score = 40.1 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 15/128 (11%), Positives = 38/128 (29%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 ++ + AG+P+ DA+ + G + + V + +S Sbjct: 277 RVLSTTFAAGVPLVDALESVAGATGNAVYR-----DAIMRIRSDVSSGTQLQASMRAQDV 331 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + ++ + GNL E L ++ + ME + + + + Sbjct: 332 FPVMAVQLTAIGEESGNLDEMLEKVAEHYEAVVDDMVDNLTALMEPMIMSVLGVLVGGLI 391 Query: 141 STLVYFTS 148 + Sbjct: 392 IAMYLPIF 399 >gi|283851908|ref|ZP_06369184.1| type II secretion system protein [Desulfovibrio sp. FW1012B] gi|283572632|gb|EFC20616.1| type II secretion system protein [Desulfovibrio sp. FW1012B] Length = 405 Score = 60.9 bits (146), Expect = 9e-08, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 52/162 (32%), Gaps = 6/162 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLSESISRMVRYMP 77 + + +GL +S ++A++ QS + + G + SE+++ R Sbjct: 71 LTRQLASLLGSGLTLSRSLALLARQSEAKRARGVIDALGEKLRSGATFSEALAAFPR--- 127 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 E + + GG + EA L+ I + + AK ++ + + Sbjct: 128 --EFDALYVAMIRAGEAGGRMEEAAERLAGIREASEEIAAKFKSALIYPAFMFLAMSGAV 185 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + T V + + + A + + Sbjct: 186 IVLVTFVVPRFGQLFADMGQAMPLPTRMLLDAVAVFQAYWWL 227 >gi|157146466|ref|YP_001453785.1| hypothetical protein CKO_02226 [Citrobacter koseri ATCC BAA-895] gi|157083671|gb|ABV13349.1| hypothetical protein CKO_02226 [Citrobacter koseri ATCC BAA-895] Length = 402 Score = 60.9 bits (146), Expect = 9e-08, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 57/169 (33%), Gaps = 14/169 (8%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74 + V A LP+ A+ I Q+ D + + + G +L ++ S+ R Sbjct: 65 LSMFTRQLSTLVNAALPLESALKAISKQTEDKKLAVMVGEIRDKVVEGHTLFDAFSQFPR 124 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + G+L L L+ R+ MK+K+ + + Sbjct: 125 T-----FDKLYCTLVMAGEKTGHLGGVLEKLAEYNEQRQKMKSKLSQAMVYPIT---LTV 176 Query: 135 SLPFCVSTLVYFTSPGYMNVLIND-----PRGHMLLGVAAAFMLIGIMV 178 +S L+ P + ++ L+ V+ G+++ Sbjct: 177 VAIAVISILLVAVVPQVIEQFVHMKQQLPVTTRTLIAVSDFLQAYGMVI 225 >gi|257053921|ref|YP_003131754.1| type II secretion system protein [Halorhabdus utahensis DSM 12940] gi|256692684|gb|ACV13021.1| type II secretion system protein [Halorhabdus utahensis DSM 12940] Length = 678 Score = 60.9 bits (146), Expect = 9e-08, Method: Composition-based stats. Identities = 15/150 (10%), Positives = 50/150 (33%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 + L + + G+ + +++ ++ SS + EF + G +L ++ Sbjct: 457 RHSIIGKLSENLRKLSSANETGMTLLESLNIVARTSSGRLADEFSIMHRKVQYGTNLKQA 516 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + +S +IS + + + L+ ++ ++ ++ ++ + Sbjct: 517 LREFNNKYHVPRLSRTVKLISEAQEASNQIQDVLSTAAQASENQDDIDRDRKSRTRMQVV 576 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158 + V ++ M L Sbjct: 577 IIIMTFLTLLGVIAMLKVQFFETMAGLSQT 606 Score = 47.4 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 53/179 (29%), Gaps = 7/179 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQH 60 R + +A+ + GL D + I + V EF+ ++ Sbjct: 141 FRASARERQINVMLSDAVSFMYALSVGGLNQLDILEAIAAADDTYGEVAKEFQSIVLETT 200 Query: 61 LG-LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 +I P E+S F T + GG+++ L + + Sbjct: 201 YFDTDYRTAIRNQAIQTPSDELSQFLTDMLSIVDSGGDMTSFLEDQKNKYMRTSKQTQER 260 Query: 120 QALSMEAKASAWII----GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 ++E ++ L + ++ ++ G + + A +L+ Sbjct: 261 MLETLELFGEMYMTLSLFPLLLIIILVVMSMMGNASTQLMYITVYGLIPMINVAFLVLV 319 >gi|1016256|gb|AAA96018.1| MshG [Vibrio cholerae C6706] Length = 363 Score = 60.9 bits (146), Expect = 9e-08, Method: Composition-based stats. Identities = 16/165 (9%), Positives = 43/165 (26%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72 + + +AG+P+ ++ + + V G +LS Sbjct: 67 EVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS-----A 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + S + + G L +AL L+ + +++ Sbjct: 122 SMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITF 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + F ++ V + D + + + + Sbjct: 182 VLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYW 226 >gi|269968034|ref|ZP_06182072.1| MSHA biogenesis protein MshG [Vibrio alginolyticus 40B] gi|269827391|gb|EEZ81687.1| MSHA biogenesis protein MshG [Vibrio alginolyticus 40B] Length = 407 Score = 60.9 bits (146), Expect = 9e-08, Method: Composition-based stats. Identities = 21/168 (12%), Positives = 53/168 (31%), Gaps = 6/168 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + +AG+P+ ++ ++ + E V+ G LS ++ + + Sbjct: 71 FSRQLFSLTKAGVPLLRSMRGLLQNCENKQLKEALEDVVSELSNGRGLSSAMQQHSK--- 127 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 S + + G L +AL L+ + +++A I Sbjct: 128 --VFSPLFVSMINVGENTGRLDQALLQLANYYEQELETRKRIKAAMRYPTFVIIFITIAM 185 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 F ++ LV + + +A + + V+ ++ Sbjct: 186 FVLNILVIPEFASMFARFGVELPLPTRILIATSNFFVNYWVLLVVAMI 233 Score = 37.8 bits (86), Expect = 0.75, Method: Composition-based stats. Identities = 11/135 (8%), Positives = 37/135 (27%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 +++G+P++ ++A+ + + ++ + Sbjct: 268 RAQLSRFARTFSLMLKSGVPLNQSLALAGEALGNRFLE-----NRILEMKSAIEAGSTIS 322 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 V + + + + + G + E L +S + K +E + Sbjct: 323 VTAINSKIFTPLVIQMIAVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPLLLVIV 382 Query: 133 IGSLPFCVSTLVYFT 147 G + + Sbjct: 383 AGMVMVLALGIFLPM 397 >gi|157373565|ref|YP_001472165.1| type II secretion system protein [Shewanella sediminis HAW-EB3] gi|157315939|gb|ABV35037.1| type II secretion system protein [Shewanella sediminis HAW-EB3] Length = 421 Score = 60.9 bits (146), Expect = 9e-08, Method: Composition-based stats. Identities = 19/167 (11%), Positives = 48/167 (28%), Gaps = 6/167 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 L K D + + AG+P+ + ++ +R ++ Sbjct: 69 NSLFKSEKKITAMDIAMMTRQVATMLSAGVPIVTTLELLGRGHEKPKMRELLATIVGDVQ 128 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ LS+S+ Q + + G+L ++ + +K+K++ Sbjct: 129 SGIPLSDSLK-----PHRQYFDDLYVDLVAAGEHSGSLDAVFDRIATYREKAEALKSKIK 183 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 A + ++ + V + + V Sbjct: 184 KAMFYPAAVVVVAIAVTALLLLFVVPQFEEIFQGFGAELPAFTQMIV 230 >gi|153833903|ref|ZP_01986570.1| general secretion pathway protein F [Vibrio harveyi HY01] gi|148869741|gb|EDL68718.1| general secretion pathway protein F [Vibrio harveyi HY01] Length = 406 Score = 60.9 bits (146), Expect = 9e-08, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 57/169 (33%), Gaps = 8/169 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 + + V++G+P+ + + + Q+ +RS V G L++S+ Sbjct: 65 TAELALITRQLSTLVQSGMPLEECLKAVSEQAEKPRIRSMIAAVRSKVTEGYPLADSLGD 124 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + G+L L L+ + +R+ M++K+ + Sbjct: 125 YP-----HVFDELFRSMVAAGEKSGHLDAVLERLADYVENRQKMRSKLLQAMIYPVVLVV 179 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMV 178 + + + V + + + MLL + G+++ Sbjct: 180 FAVGIVSLLLSSVVPKIIEPIIQMGQELPQSTQMLLSASEFVQEWGLII 228 >gi|262189839|ref|ZP_06048173.1| general secretion pathway protein F [Vibrio cholerae CT 5369-93] gi|262034282|gb|EEY52688.1| general secretion pathway protein F [Vibrio cholerae CT 5369-93] Length = 379 Score = 60.5 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 64/183 (34%), Gaps = 20/183 (10%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + V++G+P+ + + + QS +R+ V G +LS+S+ Sbjct: 40 DLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYP 99 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G+L L L+ +R+ M++K+Q + ++ Sbjct: 100 -----HVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPV---VLV 151 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-----------AFMLIGIMVMRLM 182 V+ L+ P + + + +L+G++++ + Sbjct: 152 VFAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYL 211 Query: 183 INF 185 + + Sbjct: 212 VRW 214 >gi|254426789|ref|ZP_05040496.1| general secretion pathway protein F [Alcanivorax sp. DG881] gi|196192958|gb|EDX87917.1| general secretion pathway protein F [Alcanivorax sp. DG881] Length = 405 Score = 60.5 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 52/155 (33%), Gaps = 9/155 (5%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + +++GLPV A++ + Q ++D + V G SL+ S R P Sbjct: 71 TRQLATLLKSGLPVEQALSAVSKQAANDRIERIMLAVRAKVREGYSLARSFESFPRAFP- 129 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + G+L + L L+ L R + V + +I+ Sbjct: 130 ----EMYRATVAAGEQSGHLEQVLEQLADYLETRHDTGRSVAQAMIYPA---FIMVFASI 182 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + ++ F P + V + LL M Sbjct: 183 VIMLMMTFVVPKLVAVFEGRDQALPLLTRIVMAMS 217 >gi|399800|sp|P31704|GSPF_ERWCH RecName: Full=General secretion pathway protein F; AltName: Full=Pectic enzymes secretion protein outF gi|148436|gb|AAA24833.1| secretory component [Erwinia chrysanthemi] gi|259984|gb|AAB24180.1| OutF=pectic enzyme secretion protein [Erwinia chrysanthemi, Peptide, 404 aa] Length = 404 Score = 60.5 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 53/158 (33%), Gaps = 10/158 (6%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66 R+ + D + V A LP+ +A+ + QS + + V G SL+ Sbjct: 61 RSHRIASDLALLTRQLATLVAA-LPLEEALDAVAKQSEKPKLSALMAAVRAKVVEGHSLA 119 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ + + G+L L L+ R M++++Q + Sbjct: 120 EAMGNFP-----GSFERLYCAMVAAGEASGHLDAVLNRLADYTEQRHEMRSRIQQAMIYP 174 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 + VS L+ P + I+ + L Sbjct: 175 ---CVLTLVAISVVSILLSAVVPKVVEQFIHMKQALPL 209 >gi|288942707|ref|YP_003444947.1| Type II secretion system F domain-containing protein [Allochromatium vinosum DSM 180] gi|288898079|gb|ADC63915.1| Type II secretion system F domain protein [Allochromatium vinosum DSM 180] Length = 402 Score = 60.5 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 18/167 (10%), Positives = 48/167 (28%), Gaps = 6/167 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71 + + + AGL + ++ ++V S + + + E G + S ++ Sbjct: 62 QKEIGILTRELATLLEAGLTLDRSLQILVDLTSEEHLVRVLSDLQERVRGGATFSSALEA 121 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + + G + + L L+ L ++ V + + + Sbjct: 122 QDKQFP-----RLYINMVRAGEASGAMEQVLDRLADYLERLAELRQTVTSALVYPSILLF 176 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + V + + VAA + Sbjct: 177 VAALSVILLLVFVVPQFTVLFEDMGEALPLSTQIVVAAGDLFRHYWW 223 >gi|300786332|ref|YP_003766623.1| type IV pilus assembly protein PilC [Amycolatopsis mediterranei U32] gi|299795846|gb|ADJ46221.1| type IV pilus assembly protein PilC [Amycolatopsis mediterranei U32] Length = 401 Score = 60.5 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 52/158 (32%), Gaps = 4/158 (2%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + VRAGLP+ DAV ++ ++++ + R +E G + Sbjct: 68 RQLGAFVRAGLPLIDAVRILGEEAANSSVARMLRSVEQGLRGGDRLSDCVD----RHPKI 123 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 F I ++L G L L L+ L + K++A + A + + Sbjct: 124 FPEFYREILRSAELTGQLDVVLDQLADYLERDLEARRKIKAALIYPAMIAVMSVVTVVVL 183 Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 +T V + L + +A L Sbjct: 184 ATFVLPRFKSFFASLNAKLPLPTRMLLAITDFLGAWWW 221 Score = 44.3 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 36/129 (27%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 I+ V AG+P+ +A+ V + V + +G ++ Sbjct: 269 FCRILSSMVSAGVPLPEALRVATDSLRNRVF-----MRALARVGQAVLNGEGLARPLTGS 323 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G L L ++ + + K E + + F Sbjct: 324 GLFPVTAAQMIRVGEDTGTLDTQLEITAQYYEGELDYRLKKLTALFEPAVIVVMGLVVGF 383 Query: 139 CVSTLVYFT 147 LV Sbjct: 384 VAVALVSAM 392 >gi|28900581|ref|NP_800236.1| putative TadC protein [Vibrio parahaemolyticus RIMD 2210633] gi|260365461|ref|ZP_05777998.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus K5030] gi|260877526|ref|ZP_05889881.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AN-5034] gi|260897533|ref|ZP_05906029.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus Peru-466] gi|260901735|ref|ZP_05910130.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ4037] gi|28808961|dbj|BAC62069.1| putative TadC [Vibrio parahaemolyticus RIMD 2210633] gi|308087116|gb|EFO36811.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus Peru-466] gi|308090674|gb|EFO40369.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AN-5034] gi|308108821|gb|EFO46361.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ4037] gi|308114358|gb|EFO51898.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus K5030] gi|328470523|gb|EGF41434.1| putative TadC protein [Vibrio parahaemolyticus 10329] Length = 288 Score = 60.5 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 60/157 (38%), Gaps = 4/157 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 + P LD++ V G+ + ++ + + + V + Sbjct: 133 ISSRGNANVRHVSSRLPFLLDLMNVCVHTGMTLEASLDYLSNELKTVDENLAYVVKKTSE 192 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + L +++ +P E F ++ + G ++ LA+L+ +R+ ++ + Sbjct: 193 RAKIVGLDRALTEFYDLVPTTEAQSFVMTLTQSLKYGSSVGAVLASLASDIREINMLELE 252 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + M AK S +I + + L+ PG M +L Sbjct: 253 EKIGKMGAKMSIPMIAFIMIPIVVLIAA--PGIMRML 287 >gi|121608600|ref|YP_996407.1| general secretion pathway protein F [Verminephrobacter eiseniae EF01-2] gi|121553240|gb|ABM57389.1| general secretion pathway protein F [Verminephrobacter eiseniae EF01-2] Length = 412 Score = 60.5 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 55/159 (34%), Gaps = 7/159 (4%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 I V +GLP+ A+ + ++ D + + + S+ Sbjct: 73 LTIWTRQIAGLVSSGLPLERALTCLSQEADDERQRHLVAALRAEVNAGSM----FARALA 128 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 +E S + + GNL+ L L+ L +R+ +KA++ ++ + Sbjct: 129 QHPREFSDIYCAVISAGEHSGNLALVLERLADDLEERQALKAQLIGAALYPA---IVTLV 185 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 V LV + P +V + R LL A + Sbjct: 186 AGAIVLFLVGYVVPQVASVFVGTKRALPLLTQAMMGLSA 224 >gi|325913939|ref|ZP_08176297.1| Type II secretory pathway component [Xanthomonas vesicatoria ATCC 35937] gi|325539851|gb|EGD11489.1| Type II secretory pathway component [Xanthomonas vesicatoria ATCC 35937] Length = 405 Score = 60.5 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 20/183 (10%), Positives = 56/183 (30%), Gaps = 5/183 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ L++K+ + + AG P+ A+++++ E R + Sbjct: 54 LRMLLRKKPFD-NAALVQFTQQLSTLIGAGQPLDRALSILMD----LPEDEKSRRVIGDI 108 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + S + + GG++ + L L+ L + +K KV Sbjct: 109 RDTVRGGAPLSSALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALKGKVI 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + ++G + V L ++ ++ ++ Sbjct: 169 NALIYPAILLAVVGCALLFLLGYVVPQFAQMYESLDVALPWFTQAVLSVGLLVRDWWLVL 228 Query: 181 LMI 183 +++ Sbjct: 229 IVV 231 >gi|330883209|gb|EGH17358.1| general secretion pathway protein GspF [Pseudomonas syringae pv. glycinea str. race 4] Length = 229 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + AG P+ ++ +++ Q ++ R+ E G LS ++ Sbjct: 62 AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEE 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 S + + GG L L LS L + ++ +V + ++ Sbjct: 122 GTQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + ++ L+ + P ++ + + G + + + +G + Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGQFL 217 >gi|329765281|ref|ZP_08256861.1| Flp pilus assembly protein TadC [Candidatus Nitrosoarchaeum limnia SFB1] gi|329138187|gb|EGG42443.1| Flp pilus assembly protein TadC [Candidatus Nitrosoarchaeum limnia SFB1] Length = 304 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 19/142 (13%), Positives = 60/142 (42%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + P L ++ SV++G + A+ ++ + E + + G + Sbjct: 82 QRRDSIDRNMPVFLLALLSSVQSGSNLIKAIEQAAERNLGALTPELKNLKANISWGTPIE 141 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + + + ++ + ++GG++SE L + + + + +N++ ++ Sbjct: 142 DAFENFAKRTGTRVSRRVTVLLEMAMKIGGDVSENLEMIQKHVSEMQNIEKSRKSALQPY 201 Query: 127 KASAWIIGSLPFCVSTLVYFTS 148 + +I ++ VS L+ + Sbjct: 202 TYTIYISFAVFLAVSVLLTTSF 223 >gi|227327881|ref|ZP_03831905.1| general secretion pathway protein F [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 408 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 54/169 (31%), Gaps = 9/169 (5%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLS 64 +++ D + V A LP+ +A+ + QS + V G S Sbjct: 60 RRKIRLSTSDLALLTRQLATLVAASLPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHS 119 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L++++ + + G+L L L+ R+ M++++Q + Sbjct: 120 LADAMKCFP-----GSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMI 174 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + VS L+ P + I+ + L M Sbjct: 175 YP---CVLTVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMS 220 >gi|119512357|ref|ZP_01631442.1| pilin biogenesis protein [Nodularia spumigena CCY9414] gi|119463008|gb|EAW43960.1| pilin biogenesis protein [Nodularia spumigena CCY9414] Length = 405 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 18/174 (10%), Positives = 61/174 (35%), Gaps = 14/174 (8%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+ + ++ V+ Q S+ ++ + G++LSES+ + Sbjct: 70 FSRQFAVLMNAGVAIVRSLGVLGEQCSNPRLKQALLEISNDVQTGMNLSESMQKHPECFD 129 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++GG L + L L+++L D ++ ++++ + ++ Sbjct: 130 G-----LYVSMVQAGEIGGVLDDVLNRLAKLLEDVARLQNQIKSALSYPVVVGILATTIF 184 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA--------AFMLIGIMVMRLMI 183 ++ + + + + + ++G ++ ++ Sbjct: 185 VAMTVFLIPIFANIFADIGVELPALTQFLMLCSKILRSWWSLAIVGSFIVLRIV 238 >gi|91209168|ref|YP_539154.1| type IV pilin biogenesis protein [Escherichia coli UTI89] gi|117622389|ref|YP_851302.1| type IV pilin biogenesis protein [Escherichia coli APEC O1] gi|237704253|ref|ZP_04534734.1| type IV pilin biogenesis protein [Escherichia sp. 3_2_53FAA] gi|91070742|gb|ABE05623.1| protein transport protein HofC [Escherichia coli UTI89] gi|115511513|gb|ABI99587.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli APEC O1] gi|226902165|gb|EEH88424.1| type IV pilin biogenesis protein [Escherichia sp. 3_2_53FAA] gi|294490593|gb|ADE89349.1| type IV pilus assembly protein PilC [Escherichia coli IHE3034] gi|307629677|gb|ADN73981.1| type IV pilin biogenesis protein [Escherichia coli UM146] gi|315285150|gb|EFU44595.1| type II secretion system F domain protein [Escherichia coli MS 110-3] gi|323950900|gb|EGB46777.1| type II secretion system protein F [Escherichia coli H252] gi|323955302|gb|EGB51075.1| type II secretion system protein F [Escherichia coli H263] Length = 400 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 22/181 (12%), Positives = 55/181 (30%), Gaps = 22/181 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGVAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + G +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANKLLM 235 Query: 180 R 180 R Sbjct: 236 R 236 >gi|149927150|ref|ZP_01915407.1| type II secretion system protein [Limnobacter sp. MED105] gi|149824089|gb|EDM83310.1| type II secretion system protein [Limnobacter sp. MED105] Length = 412 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/137 (10%), Positives = 42/137 (30%), Gaps = 1/137 (0%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +++G+P+ ++ +I G + + + V+ + S Sbjct: 75 FVRQLAVMIQSGVPLGQSLGLIAGGMTSKSKRAIQTVVRAIRADVE-SGLKLSEAMRKHP 133 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L AL L+ + ++ KV+ + + + Sbjct: 134 RCFDNLFCNTLAAGENAGELDSALGRLATHIEKTLRIRQKVRKAMIYPSIVVLVAIGVTV 193 Query: 139 CVSTLVYFTSPGYMNVL 155 + V + + Sbjct: 194 GMLLFVLPSFKSIYSQF 210 Score = 37.8 bits (86), Expect = 0.71, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 31/130 (23%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 +G+P++ A+ + S + I R P Sbjct: 282 WTRTFATLSASGVPITSALESVASVSQIRSFQDATLEIRQAVASGGRVSDSMENSRLFPP 341 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G + L L+ + K + ME I + Sbjct: 342 ES-----IQMIRIGEESGRMDSMLERLANQYETNLDDKVDTLSTVMEPMIMCIIGILVGV 396 Query: 139 CVSTLVYFTS 148 + + Sbjct: 397 LIVGMYMPIF 406 >gi|126176389|ref|YP_001052538.1| general secretion pathway protein F [Shewanella baltica OS155] gi|152998704|ref|YP_001364385.1| general secretion pathway protein F [Shewanella baltica OS185] gi|160873281|ref|YP_001552597.1| general secretion pathway protein F [Shewanella baltica OS195] gi|217971368|ref|YP_002356119.1| general secretion pathway protein F [Shewanella baltica OS223] gi|125999594|gb|ABN63669.1| general secretion pathway protein F [Shewanella baltica OS155] gi|151363322|gb|ABS06322.1| general secretion pathway protein F [Shewanella baltica OS185] gi|160858803|gb|ABX47337.1| general secretion pathway protein F [Shewanella baltica OS195] gi|217496503|gb|ACK44696.1| general secretion pathway protein F [Shewanella baltica OS223] gi|315265508|gb|ADT92361.1| general secretion pathway protein F [Shewanella baltica OS678] Length = 407 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 59/173 (34%), Gaps = 8/173 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 + I V AGLP+ +++ + Q D + S V G SL++S++ Sbjct: 67 AELALITRQIATLVAAGLPIEESLKAVGQQCEKDRLASMIMAVRSRVVEGYSLADSLAEF 126 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G+L L L+ R+ +K+K+ + + Sbjct: 127 P-----HIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKLTQAMIYPAVLTTV 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML--IGIMVMRLMI 183 + + V G + + ++A+ + G+ V+ ++ Sbjct: 182 AIGVISILLAAVVPKVVGQFEHMGAELPASTRFLISASDFVQNYGVFVVIALV 234 >gi|116626772|ref|YP_828928.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116229934|gb|ABJ88643.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 312 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 69/158 (43%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + L+K K D P+ +D++ + GL + A+ + + + +EF V+ Sbjct: 147 LYRLVKSYRTKLQDALPDTVDLLGIVLGTGLGLDQAMMRVSEEMQFIYPELANEFATVVM 206 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G +S ++ VR ++++ S +I + G +L++AL + LR R+ ++A Sbjct: 207 QVRAGQDRGKSFNQFVRRTGIEDIKSLSAMIIQSEKFGTSLAQALKVYADALRTRRRLRA 266 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + K I+ + + V PG ++V+ Sbjct: 267 EAAVGKAGIKMLFPIVVFILPVLF--VITLVPGMLSVM 302 >gi|219853241|ref|YP_002467673.1| type II secretion system protein [Methanosphaerula palustris E1-9c] gi|219547500|gb|ACL17950.1| type II secretion system protein [Methanosphaerula palustris E1-9c] Length = 644 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 65/170 (38%), Gaps = 3/170 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 ++ P LD + + GL ++ A++++V + + E +R+ G + S Sbjct: 424 RKLGGIESSIPEFLDRMAGINQVGLTMAQAISIMVNANLGVLGYEIKRIKRDMEWGANFS 483 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ R R + ++ +I+ S++ G ++E L + R +K + E Sbjct: 484 EALMRFERRITTPIIARMVVLITKASEMSGQINEVLNIAASDARMSDVLKKER---LGEM 540 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 I+ +V S ++ VL G + A L I Sbjct: 541 FIYTAIVYLSFMVFIFVVGVLSSQFLPVLGGIQPGSVSQAGGAFSGLGSI 590 >gi|91225615|ref|ZP_01260689.1| MSHA biogenesis protein MshG [Vibrio alginolyticus 12G01] gi|91189735|gb|EAS76009.1| MSHA biogenesis protein MshG [Vibrio alginolyticus 12G01] Length = 407 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 21/168 (12%), Positives = 53/168 (31%), Gaps = 6/168 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + +AG+P+ ++ ++ + E V+ G LS ++ + + Sbjct: 71 FSRQLFSLTKAGVPLLRSMRGLLQNCENKQLKEALEDVVSELSNGRGLSSAMQQHSK--- 127 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 S + + G L +AL L+ + +++A I Sbjct: 128 --VFSPLFVSMINVGENTGRLDQALLQLANYYEQELETRKRIKAAMRYPTFVIIFITIAM 185 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 F ++ LV + + +A + + V+ ++ Sbjct: 186 FVLNILVIPEFASMFTRFGVELPLPTRILIATSNFFVNYWVLLVVAMI 233 Score = 37.8 bits (86), Expect = 0.72, Method: Composition-based stats. Identities = 11/135 (8%), Positives = 37/135 (27%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 +++G+P++ ++A+ + + ++ + Sbjct: 268 RAQLSRFARTFSLMLKSGVPLNQSLALAGEALGNRFLE-----NRILEMKSAIEAGSTIS 322 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 V + + + + + G + E L +S + K +E + Sbjct: 323 VTAINSKIFTPLVIQMIAVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPLLLVIV 382 Query: 133 IGSLPFCVSTLVYFT 147 G + + Sbjct: 383 AGMVMVLALGIFLPM 397 >gi|86606612|ref|YP_475375.1| type IV pilus assembly protein PilC [Synechococcus sp. JA-3-3Ab] gi|86555154|gb|ABD00112.1| type IV pilus assembly protein PilC [Synechococcus sp. JA-3-3Ab] Length = 408 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 20/143 (13%), Positives = 51/143 (35%), Gaps = 6/143 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+ + ++ ++ Q+ + ++ R + G +LS+SI Sbjct: 72 FSRQFAALINAGVSMVRSLTIMEEQTGNPKLKKYLRAIRAEVEAGKNLSDSIRPYPDAFD 131 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++GG L E L L+++L D ++ ++++ + + Sbjct: 132 G-----LYCSMVQAGEVGGVLDEVLNRLAKLLEDMDRLQKQIKSAMTYPVVVTILAVLIF 186 Query: 138 FCVSTLVYFTSPGYMNVLINDPR 160 + + T N L + Sbjct: 187 LGMVLFILPTFESIYNDLGGELP 209 Score = 35.9 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 34/130 (26%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 R+G+PV ++ ++ S + V + S+SE Sbjct: 277 FCRTFGALTRSGVPVLTSLEIVRDTSGNQVVANAIDAARQ-----SISEGGQIAPALDKA 331 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + + G L L + + +E + G + Sbjct: 332 KVFPIMAIQMISVGEETGELDAMLMKTADFYELEVEEAVRALTSLLEPLMIVILGGMVGC 391 Query: 139 CVSTLVYFTS 148 + + Sbjct: 392 IIVAMYLPMF 401 >gi|126179944|ref|YP_001047909.1| type II secretion system protein [Methanoculleus marisnigri JR1] gi|125862738|gb|ABN57927.1| type II secretion system protein [Methanoculleus marisnigri JR1] Length = 349 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 52/153 (33%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + R + PN + +G+ + A+ ++ + R++ Sbjct: 122 LDFKEAWRVSSVEASLPNFFRDVAGMNDSGMTLPHAIHIVSEGEYGALTPHIRKLDTEMS 181 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ E+I R + + +I+ S GG++SE L + + N+K + + Sbjct: 182 WGVPFVEAIRRFGKTVNTPLAERSVDLIAHASSAGGDVSEVLRAAAHDAYEFFNLKTERK 241 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153 M + + V ++ T M Sbjct: 242 NGMMIYMIIILMSFFVFLFVIGVLSGTFLTTMA 274 >gi|239817416|ref|YP_002946326.1| type II secretion system protein [Variovorax paradoxus S110] gi|239803993|gb|ACS21060.1| type II secretion system protein [Variovorax paradoxus S110] Length = 319 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 22/158 (13%), Positives = 61/158 (38%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR---SEFRRVIE 57 + + R + + P +D++ GL + ++ ++ S + E Sbjct: 156 LGRIAAGRRERIARELPLFVDLLKLLQGVGLSLDQSLQIMADDFSHVLHVLGHELTFANR 215 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + S+ R+ +++ +++ + GG + E L LR+R+ + Sbjct: 216 QYSQGRTREHSLHRLATLHGNEDLRGLVSLLVQVDRHGGAVQEPLRIFGERLRERRRSEM 275 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 K + + K + ++ +L + ++ PG++ + Sbjct: 276 KERIGKITVKMTGVMVSTLLPAL--VIVTAGPGFIAIF 311 >gi|254486463|ref|ZP_05099668.1| type II secretion system protein [Roseobacter sp. GAI101] gi|214043332|gb|EEB83970.1| type II secretion system protein [Roseobacter sp. GAI101] Length = 320 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 62/155 (40%), Gaps = 5/155 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQH 60 K R + FP+ L++IV + AGL A+ + + + E +++ Sbjct: 163 RRKNRLGRIRHSFPDMLELIVITSEAGLGPQPALHRVAQEMSLSHPELAREMLQMVSEMA 222 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + + ++M +PL E+ F+ + + G S A+ L R + M + + Sbjct: 223 MTNDCRGAYAKMNLRVPLPEIGIFTQTLDQSDRYGTPFSRAMRTLIIEQRGNRLMAIEEK 282 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A + + +I + V ++ P ++VL Sbjct: 283 AARLPVLMTLPLIFCIMPAVFVVL--VGPAVLSVL 315 >gi|209545602|ref|YP_002277831.1| type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] gi|209533279|gb|ACI53216.1| type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] Length = 313 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 58/147 (39%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +K + P+ALD++V AGLP+ A+ + + + V +EFR + Sbjct: 153 VKRMQAHYLRNVDQGIPDALDMLVICAEAGLPIEAAIGRVGREMTAVNRSVANEFRLTAQ 212 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + L + + ++ Q G ++++AL LS +R + Sbjct: 213 EMGVASDRRDVFLHFGERTNLSSMRRIGSALNQTLQAGSSVTQALRVLSVEMRKDALTEY 272 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + +A + + +I + V +V Sbjct: 273 EARAARLPVLLTLPMILFILPVVFLVV 299 >gi|251796112|ref|YP_003010843.1| type II secretion system protein [Paenibacillus sp. JDR-2] gi|247543738|gb|ACT00757.1| type II secretion system protein [Paenibacillus sp. JDR-2] Length = 402 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 46/153 (30%), Gaps = 6/153 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 +RAG+ + +A ++ Q+ P++ V G+ S+++ R P Sbjct: 68 FCRQFSTLIRAGVTIVEATNILAAQTESKPLKKALVDVSSALLRGIPFSQAVQEHKRIFP 127 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+L L L+ K K+++ + + Sbjct: 128 P-----LFVSMIRAGEETGDLEGTLDRLALFFEKAHTTKEKIKSAMTYPAVVGLMSIASV 182 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + V + + +A + Sbjct: 183 IYLLQGVVPQFVTMFESFDTELPAITKIVLALS 215 >gi|153836407|ref|ZP_01989074.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ3810] gi|149750309|gb|EDM61054.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ3810] Length = 288 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 60/157 (38%), Gaps = 4/157 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 + P LD++ V G+ + ++ + + + V + Sbjct: 133 ISSRGNANVRHVSSRLPFLLDLMNVCVHTGMTLEASLDYLSNELKTVDENLAYVVKKTSE 192 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + L +++ +P E F ++ + G ++ LA+L+ +R+ ++ + Sbjct: 193 RAKIVGLDRALTEFYDLVPTTEAQSFVMTLTQSLKYGSSVGAVLASLASDIREINMLELE 252 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + M AK S +I + + L+ PG M +L Sbjct: 253 EKIGKMGAKMSIPMIAFIMIPIVVLIAA--PGIMRML 287 >gi|304412648|ref|ZP_07394252.1| general secretion pathway protein F [Shewanella baltica OS183] gi|307307258|ref|ZP_07586995.1| general secretion pathway protein F [Shewanella baltica BA175] gi|304348992|gb|EFM13406.1| general secretion pathway protein F [Shewanella baltica OS183] gi|306910313|gb|EFN40745.1| general secretion pathway protein F [Shewanella baltica BA175] Length = 407 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 59/173 (34%), Gaps = 8/173 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 + I V AGLP+ +++ + Q D + S V G SL++S++ Sbjct: 67 AELALITRQIATLVAAGLPIEESLKAVGQQCEKDRLASMIMAVRSRVVEGYSLADSLAEF 126 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G+L L L+ R+ +K+K+ + + Sbjct: 127 P-----HIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKLTQAMIYPAVLTTV 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML--IGIMVMRLMI 183 + + V G + + ++A+ + G+ V+ ++ Sbjct: 182 AIGVISILLAAVVPKVVGQFEHMGAELPASTRFLISASDFVQNYGVFVVIALV 234 >gi|227819312|ref|YP_002823283.1| TadC pilus assembly protein [Sinorhizobium fredii NGR234] gi|227338311|gb|ACP22530.1| TadC pilus assembly protein [Sinorhizobium fredii NGR234] Length = 313 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 23/165 (13%), Positives = 68/165 (41%), Gaps = 4/165 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + ++ FP+ +D+++ + AG+ + A + + ++ Sbjct: 148 IDRRGSAKEREYRRLFPDFMDMLIVCLDAGMSLEAAANRVAREFVSKRKDFGLHLSIMML 207 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G L E+++ + + + E + + +LG ++++ L S+ +RD + ++A Sbjct: 208 EVRGGRRLREALANLATRLRIDEARSLAVLFRQSEELGTSVTQTLRVYSKEMRDLRIVRA 267 Query: 118 KVQALSMEAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRG 161 + +A S+ K + L P + ++ + +++ G Sbjct: 268 EEKANSLPIKMLLPLGAFLFPVSLVIVLVPIVIRVVGLVVGMSPG 312 >gi|170692559|ref|ZP_02883721.1| type II secretion system protein [Burkholderia graminis C4D1M] gi|170142215|gb|EDT10381.1| type II secretion system protein [Burkholderia graminis C4D1M] Length = 318 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 67/151 (44%), Gaps = 4/151 (2%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSLSES 68 ++ FP+ALD++ V AGL + A+ + + S V +E + ++ G + ++ Sbjct: 165 IVESFPDALDLLTVCVEAGLGMDAALMRVADEMTLASPEVANELQLMLLELRSGFTKEKA 224 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME-AK 127 + +++ F++++ + G ++ +L +S LR R+ M+A+ +A + Sbjct: 225 LRNFALRTGAEDIDTFASMLVQAERFGTSIGASLRVMSDTLRTRRRMRAEERAAKIALKL 284 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158 I P ++ L+ VL+ Sbjct: 285 LFPLIFCIFPALMTVLIGPAFIHIYRVLLPT 315 >gi|254245561|ref|ZP_04938882.1| Flp pilus assembly protein TadC [Burkholderia cenocepacia PC184] gi|124870337|gb|EAY62053.1| Flp pilus assembly protein TadC [Burkholderia cenocepacia PC184] Length = 330 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 60/158 (37%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 ++ R +D+ P +D++ GL + ++ V+ + SE Sbjct: 168 VQRRAASRRQSVVDELPLLVDMLRLLQGVGLSLDQSLQVVTNDFRGMLPVLSSEVGIAQR 227 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+ R+ +++ ++ + GG + E L LR+ + Sbjct: 228 QFAAGRTREQSLQRLSSGFDNEDLRAIVRLMIQVDKHGGAVQEPLKQFGDRLRETRRAML 287 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + K + ++ +L + L+ PG + V+ Sbjct: 288 RERIGRLTVKMTGVMVLTLLPAL--LIVTAGPGMLAVM 323 >gi|91212375|ref|YP_542361.1| type II secretion protein GspF [Escherichia coli UTI89] gi|117625267|ref|YP_854405.1| putative type II secretion protein GspF [Escherichia coli APEC O1] gi|218560036|ref|YP_002392949.1| General secretion pathway protein F [Escherichia coli S88] gi|237706293|ref|ZP_04536774.1| type II secretion protein GspF [Escherichia sp. 3_2_53FAA] gi|306816697|ref|ZP_07450829.1| General secretion pathway protein F [Escherichia coli NC101] gi|91073949|gb|ABE08830.1| hypothetical type II secretion protein GspF [Escherichia coli UTI89] gi|115514391|gb|ABJ02466.1| putative type II secretion protein GspF [Escherichia coli APEC O1] gi|218366805|emb|CAR04574.1| General secretion pathway protein F [Escherichia coli S88] gi|226899333|gb|EEH85592.1| type II secretion protein GspF [Escherichia sp. 3_2_53FAA] gi|294491425|gb|ADE90181.1| general secretion pathway protein F [Escherichia coli IHE3034] gi|305850262|gb|EFM50721.1| General secretion pathway protein F [Escherichia coli NC101] gi|307625437|gb|ADN69741.1| General secretion pathway protein F [Escherichia coli UM146] gi|315288715|gb|EFU48113.1| general secretion pathway protein F [Escherichia coli MS 110-3] gi|323951517|gb|EGB47392.1| general secretion pathway protein F [Escherichia coli H252] gi|323957552|gb|EGB53267.1| general secretion pathway protein F [Escherichia coli H263] Length = 407 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 56/169 (33%), Gaps = 8/169 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 66 TADLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLRE 125 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 R + + G+L L L+ R+ +K+++ + Sbjct: 126 HPR-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLV 180 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + + T V + L + ML+ ++ A G+ Sbjct: 181 VATGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDALQASGVYW 229 >gi|161504730|ref|YP_001571842.1| type IV pilin biogenesis protein [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866077|gb|ABX22700.1| hypothetical protein SARI_02853 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 400 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 58/177 (32%), Gaps = 10/177 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + +L G L+E L+R + ++ + V+ Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPA---I 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMINFDV 187 I+ V +++F P + + + LL + G L++ V Sbjct: 169 IMTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGWLILLLAV 225 >gi|88602462|ref|YP_502640.1| type II secretion system protein [Methanospirillum hungatei JF-1] gi|88187924|gb|ABD40921.1| type II secretion system protein [Methanospirillum hungatei JF-1] Length = 641 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 68/181 (37%), Gaps = 4/181 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++ P+ LD + G+ ++ ++AVI + + E R+ G Sbjct: 419 RWNQKIRSLESMIPDFLDRMAGINEVGITLTQSIAVIARANMGVLGYEISRIHRDIEWGA 478 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + S+++ R + ++ T+I+ + + ++S L + R +N++ + Sbjct: 479 NFSDALIRFEHRVRTALIARTVTLITRAATMSSSISSLLRIAANDARMSENLR---RDRF 535 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI-NDPRGHMLLGVAAAFMLIGIMVMRLM 182 E I+ F ++ + ++ VL G + G + ++ M + Sbjct: 536 SEMFIYTAIVYLSFFVFIFVIGVITTQFLTVLAEQSKEGLAMAGPLSNLGSTSLITMDRL 595 Query: 183 I 183 + Sbjct: 596 L 596 >gi|53804536|ref|YP_113585.1| general secretion pathway protein F [Methylococcus capsulatus str. Bath] gi|53758297|gb|AAU92588.1| general secretion pathway protein F [Methylococcus capsulatus str. Bath] Length = 364 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 49/175 (28%), Gaps = 3/175 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L ++R ++ ++AGLP+ A+ ++ + + + L Sbjct: 14 LSRRRNRISQKQIGIFTRELLTLLQAGLPLDRAL-FVLEDLTREDVALNGMIGRVIELVK 72 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S S F + + GG L + L LS L K ++ V Sbjct: 73 G--GSQLSAALERQEGVFSRFYLNLIRAGEAGGALEDVLERLSDYLERSKELRDTVSTAM 130 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + + T V + + V A +L Sbjct: 131 IYPAILLTMSVGSLLLLLTFVVPQFEEMFETAGKELPVPTQIVVGIAELLKNYWW 185 >gi|251788922|ref|YP_003003643.1| general secretion pathway protein F [Dickeya zeae Ech1591] gi|247537543|gb|ACT06164.1| general secretion pathway protein F [Dickeya zeae Ech1591] Length = 408 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 54/159 (33%), Gaps = 10/159 (6%) Query: 8 RTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65 R+ + D + V A LP+ +A+ + QS + + V G SL Sbjct: 61 RSHRISASDLALLTRQLATLVAAALPLEEALDAVAKQSEKPKLSALMAAVRAKVVEGHSL 120 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +E++ + + G+L L L+ R+ M++++Q + Sbjct: 121 AEAMGNFP-----GSFERLYCAMVAAGEASGHLDAVLNRLADYTEQRQQMRSRIQQAMIY 175 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 + VS L+ P + I+ + L Sbjct: 176 P---CVLTLVAISVVSILLSAVVPKVVEQFIHMKQALPL 211 >gi|26246040|ref|NP_752079.1| type IV pilin biogenesis protein [Escherichia coli CFT073] gi|227884991|ref|ZP_04002796.1| type IV pilin biogenesis protein [Escherichia coli 83972] gi|300938499|ref|ZP_07153239.1| type II secretion system F domain protein [Escherichia coli MS 21-1] gi|300993822|ref|ZP_07180562.1| type II secretion system F domain protein [Escherichia coli MS 45-1] gi|301050002|ref|ZP_07196918.1| type II secretion system F domain protein [Escherichia coli MS 185-1] gi|26106437|gb|AAN78623.1|AE016755_123 Protein transport protein hofC [Escherichia coli CFT073] gi|227838129|gb|EEJ48595.1| type IV pilin biogenesis protein [Escherichia coli 83972] gi|300298275|gb|EFJ54660.1| type II secretion system F domain protein [Escherichia coli MS 185-1] gi|300406462|gb|EFJ90000.1| type II secretion system F domain protein [Escherichia coli MS 45-1] gi|300456568|gb|EFK20061.1| type II secretion system F domain protein [Escherichia coli MS 21-1] gi|307551950|gb|ADN44725.1| protein transport protein HofC [Escherichia coli ABU 83972] gi|315294670|gb|EFU54017.1| type II secretion system F domain protein [Escherichia coli MS 153-1] gi|323190214|gb|EFZ75490.1| bacterial type II secretion system protein F domain protein [Escherichia coli RN587/1] Length = 400 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 22/181 (12%), Positives = 55/181 (30%), Gaps = 22/181 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGVAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + G +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANKLLM 235 Query: 180 R 180 R Sbjct: 236 R 236 >gi|291333682|gb|ADD93371.1| general secretion pathway protein F [uncultured marine bacterium MedDCM-OCT-S01-C143] Length = 410 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 55/160 (34%), Gaps = 9/160 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 + A + V AG+P+ ++ +V Q ++ + V + G+ + ++++ Sbjct: 72 ELAVATRQLATLVGAGIPLVQSLTALVDQIEAPRFKAVWADVKTRVNEGVGMGDAMAAYP 131 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R S + + G L L L+ + +++ K+ + + Sbjct: 132 R-----YFSNLYVSMVRAGESSGALEIVLERLADFTESQADLRGKLIGAMIYPMIMVVVA 186 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 ++ + T+V P V + L+ + Sbjct: 187 IAVVAMLFTVVV---PKIATVFESQKVALPLVTRVLISLS 223 >gi|291562875|emb|CBL41691.1| Type II secretory pathway, component PulF [butyrate-producing bacterium SS3/4] Length = 346 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 25/192 (13%), Positives = 59/192 (30%), Gaps = 14/192 (7%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +KKR + V +GL + + + ++ +D EF ++ Sbjct: 1 MKKRKKLGAERLSEFFRQFSVLVESGLSIPETLEIMQQDDTD---REFCLACRKLGAFMT 57 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +++ + + + +++ G L A L+ + K+++ + Sbjct: 58 EGKTVGDAMEETGR--FPEPAIQMIRAAEMSGQLVRTTARLAVHYEKEHRTEGKIRSAVL 115 Query: 125 EAKASAWIIGSLPFCVS---------TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K ++ L V LV T P +L+ + Sbjct: 116 YPKILVLMMIFLMLFVFLEILPTLEPLLVDVTLPLLTRILMGISHFLYAYRYFLPVAAVM 175 Query: 176 IMVMRLMINFDV 187 I+V ++ V Sbjct: 176 ILVGWKILTERV 187 Score = 35.9 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 42/134 (31%), Gaps = 7/134 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + +GLP++ + G + + E R ++ G+ LSE+I Sbjct: 215 FCENMSSLYSSGLPITSCLKYTEGTIGNRYLDREIRTIMACVSSGMLLSEAIRESG---- 270 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + V + G+L + L ++ ++ +E I Sbjct: 271 --GFEKKLAAVIVTGEEAGHLDKMLERIAGSYEHESDLALNKLVNLLEPVMILLIGIFTG 328 Query: 138 FCVSTLVYFTSPGY 151 + ++ Y Sbjct: 329 ILILGIMEPMWNMY 342 >gi|167037482|ref|YP_001665060.1| type II secretion system protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040144|ref|YP_001663129.1| type II secretion system protein [Thermoanaerobacter sp. X514] gi|307724537|ref|YP_003904288.1| type II secretion system F domain-containing protein [Thermoanaerobacter sp. X513] gi|320115896|ref|YP_004186055.1| type II secretion system F domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166854384|gb|ABY92793.1| type II secretion system protein [Thermoanaerobacter sp. X514] gi|166856316|gb|ABY94724.1| type II secretion system protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|307581598|gb|ADN54997.1| Type II secretion system F domain protein [Thermoanaerobacter sp. X513] gi|319928987|gb|ADV79672.1| Type II secretion system F domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 403 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 55/169 (32%), Gaps = 9/169 (5%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSE 67 + D + AG+P+ ++ + Q + +++ R V E G +LS+ Sbjct: 58 KKVKVKDIAVFCRQFATLINAGIPIVTSLVTMREQVENKRLKNALREVYEEVQKGRTLSD 117 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ R P+ + ++ G L + + ++ + K+++ Sbjct: 118 AMKRHSDVFPM-----LLYNMVEVGEVSGTLDKVMNEMAEHYEKENELNQKIKSALTYPV 172 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + V L+ P ++ + N L + I Sbjct: 173 ---IVSIVAILVVIFLLTNVLPIFVGMFENAGVQLPLPTRILLAISGSI 218 Score = 35.1 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 46/131 (35%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P+ A+ V+ + V +E ++ + GL LSE + R+ + P Sbjct: 271 FTRTLGTLISAGVPLMKAMEVVEKVVGNTVVAEGLKKAQDDIKKGLPLSEPLKRIGIFPP 330 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G+L L + + +E + + Sbjct: 331 M------VIQMIGIGESSGSLDSILNKTADFYDGEVDTAVSQMTTLLEPLIIVMLATVVG 384 Query: 138 FCVSTLVYFTS 148 F V +++ Sbjct: 385 FIVISIIMPLF 395 >gi|289578260|ref|YP_003476887.1| type II secretion system F domain protein [Thermoanaerobacter italicus Ab9] gi|289527973|gb|ADD02325.1| Type II secretion system F domain protein [Thermoanaerobacter italicus Ab9] Length = 402 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 57/161 (35%), Gaps = 11/161 (6%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSL 65 KR + D + AG+P+ A+A + Q + +++ R V E G SL Sbjct: 58 KRVK--IKDIAVFCRQFATLINAGIPIVTALATMKEQVENKRLKNALREVYEEVQKGKSL 115 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S+++ + P+ + ++ G L + + ++ + KV++ Sbjct: 116 SDAMKKQGDVFPV-----LLYNMVEVGEVSGTLDKVMNEMADHYEKENELNQKVKSALTY 170 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 + V L+ P ++++ N L Sbjct: 171 PV---IVSFVAVLVVIFLLTNVLPIFVDLFKNAGVQLPLPT 208 Score = 38.9 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 7/134 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMP 77 + + AG+P+ A+ V+ + + SE R E GL LSE + +M + P Sbjct: 271 FTRTLGTLISAGIPLIAAMEVVEKVVGNTIVSEGLRKAQEDIKKGLPLSEPLKKMGIFPP 330 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G+L L + + +E + + Sbjct: 331 M------VIQMISVGESSGSLDSILNKAADFYDGEVDTAVSQMTTLLEPLIIVMLATVVG 384 Query: 138 FCVSTLVYFTSPGY 151 F V +++ Y Sbjct: 385 FIVVSIIMPLFQLY 398 >gi|261820714|ref|YP_003258820.1| general secretion pathway protein F [Pectobacterium wasabiae WPP163] gi|261604727|gb|ACX87213.1| general secretion pathway protein F [Pectobacterium wasabiae WPP163] Length = 408 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 54/169 (31%), Gaps = 9/169 (5%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLS 64 +++ D + V A LP+ +A+ + QS + V G S Sbjct: 60 RRKIRISTSDLALLTRQLATLVAASLPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHS 119 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L++++ + + G+L L L+ R+ M++++Q + Sbjct: 120 LADAMKCFP-----SSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMI 174 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + VS L+ P + I+ + L M Sbjct: 175 YP---CVLTVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMS 220 >gi|297180469|gb|ADI16683.1| type II secretory pathway, component pulf [uncultured gamma proteobacterium HF0010_05D02] Length = 410 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 51/157 (32%), Gaps = 9/157 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73 + + V + LP+ + + Q+ +V G +L+ ++++ Sbjct: 72 ELALITRQLATLVASALPLDECLQAAAEQTRKASTKALLLQVRSKVAEGHTLAHAMAQFP 131 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G L L L+ +R++ K+Q + +I Sbjct: 132 QTFGD-----MYRAMVNAGEQAGQLGPVLDQLADYTENRQHTAQKLQMALIYPF---VLI 183 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 G V+ L+ F P + + L VA Sbjct: 184 GVAIAVVTALMVFVVPEMVGIFAQTKTDLPPLTVALI 220 Score = 36.3 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 19/142 (13%), Positives = 44/142 (30%), Gaps = 7/142 (4%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLS 66 R D + + +G+P+ DA+ + ++ +R+ + V G SL+ Sbjct: 268 RRVLIGMDTARFSSTLSILMASGVPLLDALRIAGAVMNNLVLRAASKEVAAKVQEGSSLN 327 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++S+ + P+ + + G L L + E Sbjct: 328 RALSQEAFFPPM------MVHMVASGETSGELETMLERSASNQERELEATLGTVMGLFEP 381 Query: 127 KASAWIIGSLPFCVSTLVYFTS 148 + G + V ++ Sbjct: 382 VMVVVMGGLVLTIVMAILLPIF 403 >gi|113968763|ref|YP_732556.1| type II secretion system protein [Shewanella sp. MR-4] gi|113883447|gb|ABI37499.1| type II secretion system protein [Shewanella sp. MR-4] Length = 421 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 18/166 (10%), Positives = 48/166 (28%), Gaps = 6/166 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMV 73 D I + AG+P+ + ++ E ++ G+ LS+S+ Sbjct: 82 DIAMVTRQIATMLAAGVPLVTTIEMLGRGHEKQKMRELLGTILSEVQSGIPLSDSLR--- 138 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G+L ++ + +K+K++ A + Sbjct: 139 --PHRRYFDDLYVDLVAAGEHSGSLDAVFDRIATYREKAEALKSKIKKAMFYPAAVVVVA 196 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ + V + + V + L + Sbjct: 197 IAVTTLLLLFVVPQFESIFASFGAELPAFTQMIVGISRFLQSSWYI 242 >gi|325521658|gb|EGD00426.1| general secretion pathway protein F [Burkholderia sp. TJI49] Length = 245 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 65/188 (34%), Gaps = 17/188 (9%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + + +R + + AGLP+ +A+ V+ QS D +R + Sbjct: 3 LGRKLSQREQAI------LTRQLASLLIAGLPLDEALGVLTEQSERDYIRELMAAIRAEV 56 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SL+ ++S+ R + + + G L L+ L + R +K K+ Sbjct: 57 LGGHSLANALSQHPR-----DFPEIYRALVSAGEHTGKLGIVLSRLPGYIEQRNALKQKI 111 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIM 177 + V+ L+ + P +NV + + +L + A + Sbjct: 112 LLAFTYPA---IVTLIAFGIVTFLLSYVVPQVVNVFASTKQQLPILTIVMMALSEFVRHW 168 Query: 178 VMRLMINF 185 ++I Sbjct: 169 WWAILIAV 176 >gi|212717044|ref|ZP_03325172.1| hypothetical protein BIFCAT_01991 [Bifidobacterium catenulatum DSM 16992] gi|212660032|gb|EEB20607.1| hypothetical protein BIFCAT_01991 [Bifidobacterium catenulatum DSM 16992] Length = 258 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 56/163 (34%), Gaps = 1/163 (0%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + SVR+G+ + A + G R+ E + + ++ +S Sbjct: 88 LRASVRSGVTLVQAFEELGGTPFATPELTRLRITMVIRSRCPRKEQFGQGGQSGQVERLS 147 Query: 83 -FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + LG L ++ L+ ++ + KA+ ++ +LP Sbjct: 148 GELYAACRLSLTLGCETDRCLQAVAESLKRQRLLDDLRANAFAMPKATMKLLMALPLLTV 207 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + L++ +G LG A G++ +R ++ Sbjct: 208 LLGEGMGVHSLVFLVSGVKGLACLGFALCCYTFGLIWIRALMR 250 >gi|157147471|ref|YP_001454790.1| type IV pilin biogenesis protein [Citrobacter koseri ATCC BAA-895] gi|157084676|gb|ABV14354.1| hypothetical protein CKO_03270 [Citrobacter koseri ATCC BAA-895] Length = 400 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 19/172 (11%), Positives = 45/172 (26%), Gaps = 4/172 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + + ++AGL +S+ + ++ GQ + + + Sbjct: 58 EQSAEIVHQLATLLKAGLTLSEGLTLLAGQHPSRQWQALLQTLAHNLEQG----APLSSA 113 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 Q + +L G L E L+R +K + KV+ + Sbjct: 114 LAQWPQVFPPLYQAMIRTGELTGKLDECCFELARQQNAQKQLADKVKKALRYPIIILTMA 173 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + F + V + A + ++ Sbjct: 174 VMVVFAMLHFVLPEFAAIYRTFNTPLPALTQGIITLAQWSAQWGWLMALLGI 225 >gi|311280235|ref|YP_003942466.1| general secretion pathway protein F [Enterobacter cloacae SCF1] gi|308749430|gb|ADO49182.1| general secretion pathway protein F [Enterobacter cloacae SCF1] Length = 400 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 56/169 (33%), Gaps = 14/169 (8%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74 + V A LP+ A+ I QS D + + + + G +L+E+ + R Sbjct: 63 LTLFTRQLSTLVNAALPLESALKAISRQSEDKKLSALVSDIRDKVVEGHTLNEAFGQFPR 122 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + G L + L L+ R+ MK+++ + + Sbjct: 123 I-----FDKLYCTLVMAGEKSGALGQVLEKLADYNEQRQKMKSQLSQAMVYPIT---LTV 174 Query: 135 SLPFCVSTLVYFTSPGYMNVLIND-----PRGHMLLGVAAAFMLIGIMV 178 + L+ P ++ + L+ V+ G+ + Sbjct: 175 VAIAVIGILLVAVVPQVIDQFTHMKQQLPITTRTLIAVSDFLQAWGLYI 223 >gi|198284409|ref|YP_002220730.1| type II secretion system protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665047|ref|YP_002427077.1| tight adherence protein TadC [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248930|gb|ACH84523.1| type II secretion system protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517260|gb|ACK77846.1| tight adherence protein TadC [Acidithiobacillus ferrooxidans ATCC 23270] Length = 312 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 19/146 (13%), Positives = 61/146 (41%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 ++ K R + P +D++ GL + ++A + S + E R + + Sbjct: 150 LESKAKSRGDAVNAEIPFFVDMLALLQGVGLSLEQSLASLAQTSEAGIPLLAGEMREMGK 209 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G E++ ++ + + ++ + GG++++ L + + L++++ M Sbjct: 210 HIAIGRPRVEAMQKLAEQLGDPDFEELVNMLRQIERFGGDVAQPLRDFAGRLQEKRQMAL 269 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + + + K +A + ++ + + Sbjct: 270 RERVGKLNVKMTAVMTLTMLPALLLI 295 >gi|324119772|gb|EGC13652.1| general secretion pathway protein F [Escherichia coli E1167] Length = 407 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + L+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQASGVYW 229 >gi|70730126|ref|YP_259865.1| general secretion pathway protein F [Pseudomonas fluorescens Pf-5] gi|68344425|gb|AAY92031.1| general secretion pathway protein F [Pseudomonas fluorescens Pf-5] Length = 403 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 61/183 (33%), Gaps = 18/183 (9%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66 R +D A + + A LP+ A++ V Q+ + V G+ L+ Sbjct: 58 RPRLSDNDLAWATRQLASLLGASLPLEAALSATVEQAERKHIAQTLSAVRADVRSGMRLA 117 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E+++ R + + + G+L++ + L+ + +R ++ K+ + Sbjct: 118 EALAARPR-----DFPEIYRALIAAGEESGDLAQVMERLADYIEERNGLRGKILTAFIYP 172 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL------------GVAAAFMLI 174 + + + + V + D G L G+ A M+ Sbjct: 173 GVVGLVSIGIVIFLLSYVVPQVVSAFSQARQDLPGLTLAMLNASDFIRAWGGLCFAAMVA 232 Query: 175 GIM 177 G Sbjct: 233 GFW 235 Score = 35.1 bits (79), Expect = 4.0, Method: Composition-based stats. Identities = 15/129 (11%), Positives = 34/129 (26%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ A+ S+ S+ + E + Sbjct: 272 FASTLAILGSAGVPLLRALEAARQTLSNDRLSQSV-----SEATAKVREGANLAAALRVE 326 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G L L ++ L +A +E + G + Sbjct: 327 KVFPPVLIHLIASGEKTGALPPMLERAAQTLSRDIERRAMGMTALLEPLMIVVMGGVVLV 386 Query: 139 CVSTLVYFT 147 V ++ Sbjct: 387 IVMAVLLPI 395 >gi|260775593|ref|ZP_05884490.1| MSHA biogenesis protein MshG [Vibrio coralliilyticus ATCC BAA-450] gi|260608774|gb|EEX34939.1| MSHA biogenesis protein MshG [Vibrio coralliilyticus ATCC BAA-450] Length = 406 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 19/165 (11%), Positives = 47/165 (28%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + +AG+P+ ++ + ++ ++ V + G SLS Sbjct: 66 EVLVIFCRQLYSLTKAGVPLLRSMKGLTQNSANKQLKQALEEVTQELTNGRSLS-----A 120 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 M + S + + G L +AL L+ + +++ Sbjct: 121 SMQMHSKVFSPLFVSMINVGENTGRLDQALMQLANYYEQEVETRKRIKTAMRYPTFVISF 180 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 I F ++ V D + + + + Sbjct: 181 IVVALFVLNVKVIPQFASMFARFGVDLPLPTRILITTSEFFVNYW 225 Score = 41.3 bits (95), Expect = 0.066, Method: Composition-based stats. Identities = 12/135 (8%), Positives = 34/135 (25%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 ++AG+P++ ++A+ + + S+ + Sbjct: 268 RAQLSRFSRTFALMLKAGVPLNQSLALSAEALENKYLE-----NRLLEMKSSIEAGGTIS 322 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 Q + + + G + E L + + K +E + Sbjct: 323 TTASNSQVFTPLVLQMLSVGEETGRIDELLLEAADFYDREVDYDLKTLTARIEPILLVVV 382 Query: 133 IGSLPFCVSTLVYFT 147 G + + Sbjct: 383 AGMVLILALGIFLPM 397 >gi|242277878|ref|YP_002990007.1| type II secretion system protein [Desulfovibrio salexigens DSM 2638] gi|242120772|gb|ACS78468.1| type II secretion system protein [Desulfovibrio salexigens DSM 2638] Length = 408 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 19/167 (11%), Positives = 54/167 (32%), Gaps = 6/167 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRM 72 + + + LP+ A++ + Q+ + E + G+ LS +++ Sbjct: 69 KQITSFTRQFATLLGSSLPLVRALSFLRDQNEGTLLGEVIGTINSRVREGMPLSRALAEY 128 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + GG L +A+ L+ + ++++++KV + Sbjct: 129 PK-----YFDILYVSLVAAGETGGMLDQAMDRLAFMREAQEDLRSKVSGAMIYPAIMFIA 183 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + LV + + L + + L + Sbjct: 184 MVGAIITMMLLVVPRFAQMFSSMGQKLPIATRLLIDISDTLQQTWWL 230 Score = 37.8 bits (86), Expect = 0.74, Method: Composition-based stats. Identities = 16/138 (11%), Positives = 39/138 (28%), Gaps = 7/138 (5%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70 + + +G+P+ A+ G + + V + G L+ + Sbjct: 270 IQVSMARWCRTLGTLIGSGVPLLTALQSSAGVTGNVAVSKVVEKATAEVREGSKLATPLK 329 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 P + T + + G+L L ++ + K +E Sbjct: 330 ESGIIPP------YVTEMISMGEESGSLDSMLEKIAEHYEREVDQLVKNLTSLLEPVMIL 383 Query: 131 WIIGSLPFCVSTLVYFTS 148 + + F V ++ Sbjct: 384 VMGAVVGFIVMAILLPVF 401 >gi|187478773|ref|YP_786797.1| pilus assembly protein [Bordetella avium 197N] gi|115423359|emb|CAJ49893.1| putative pilus assembly protein [Bordetella avium 197N] Length = 283 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 1/147 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQ 59 + I+ + D P LD++ + AG + +A+ + + + R+ + Sbjct: 127 LGARIRLNRVRVAADLPFLLDVMTLCLEAGQGMVNAMYLAARHCPPGLLTTALRQALNEM 186 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G S E++ M + + V + ++ +LGG L L+ LR+ +A+ Sbjct: 187 RAGRSQREALLAMAARLDVAGVHAWVAALTQADRLGGGAGGVLRALASQLREEAFQRAEE 246 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146 A+ K ++ + C ++ F Sbjct: 247 AAMRAPVKMLFPLVTCMFPCTFLILAF 273 >gi|237801182|ref|ZP_04589643.1| general secretion pathway protein F [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024039|gb|EGI04096.1| general secretion pathway protein F [Pseudomonas syringae pv. oryzae str. 1_6] Length = 228 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + AG P+ ++ +++ Q ++ R+ E G LS ++ Sbjct: 62 AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEE 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 S + + GG L L LS L + ++ +V + ++ Sbjct: 122 GTQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + ++ L+ + P ++ + + G + + + +G + Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILDLGQFL 217 >gi|320197443|gb|EFW72057.1| Type IV fimbrial assembly protein PilC [Escherichia coli WV_060327] Length = 400 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 22/181 (12%), Positives = 55/181 (30%), Gaps = 22/181 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGVAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + G +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANKLLM 235 Query: 180 R 180 R Sbjct: 236 R 236 >gi|89074157|ref|ZP_01160656.1| putative Type IV pilin biogenesis protein [Photobacterium sp. SKA34] gi|89050093|gb|EAR55619.1| putative Type IV pilin biogenesis protein [Photobacterium sp. SKA34] Length = 407 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 23/175 (13%), Positives = 48/175 (27%), Gaps = 4/175 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 L K R +D + + +G+PV A+ ++ + R Q Sbjct: 55 SFLTKIRDQMKGEDVTVVTRQLATMIESGVPVVQALQLMASSYN----KAEMRATLLQIT 110 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 S + F + + G+L + A ++ + M+ KV Sbjct: 111 TQVESGASLSSAMRSSSPLFDKFFCDLVATGEQTGHLGQVFARIAVYREKNEAMRKKVIK 170 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + + + V + + + V A+ LI Sbjct: 171 AMIYPAMVTLTAVLVTVLMLVFVIPQFAQIFSSFGAELPLFTQIVVHASDFLIAY 225 >gi|307354769|ref|YP_003895820.1| type II secretion system F domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307158002|gb|ADN37382.1| Type II secretion system F domain protein [Methanoplanus petrolearius DSM 11571] Length = 463 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 27/202 (13%), Positives = 66/202 (32%), Gaps = 22/202 (10%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + KKR + F L + +R GL +V + + R Sbjct: 142 LQKMAKKRKEEL---FTEFLFKLSEMMRGGLDPIKSVNELAKAEIGVLTPHIRIAANRMA 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S ++ M R + ++ ++ ++ S GG +S+ + S +R +++ + + Sbjct: 199 YGDSFERAMKAMARSTGSELIARYTELVIEASYSGGGVSDLILKCSDDMRSILSIERQKE 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL---------------INDPRGHMLL 165 + + + + + Y L + H++L Sbjct: 259 GDLKQFVLIFYFAQIIIIFICYTLTNDLLPYFTDLGSTSFLGDNEIANMDFSTGFFHLIL 318 Query: 166 GVAAAFMLIGIMVMRLMINFDV 187 G +++ + DV Sbjct: 319 ----INSFFGGLIIGKISEGDV 336 >gi|153822239|ref|ZP_01974906.1| type IV pilus assembly protein TapC [Vibrio cholerae B33] gi|126520249|gb|EAZ77472.1| type IV pilus assembly protein TapC [Vibrio cholerae B33] Length = 364 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 49/149 (32%), Gaps = 6/149 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 D + + G+P+ A+ ++ ++S ++ ++ G LS+++ Sbjct: 67 SKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRT 126 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + ++ GNL E L+ + ++AKV + Sbjct: 127 ASAH-----FDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVL 181 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 + + + + T+V + Sbjct: 182 VALGVSYLMLTMVIPEFESMFKGFGAELP 210 >gi|110640317|ref|YP_668045.1| type IV pilin biogenesis protein [Escherichia coli 536] gi|215485270|ref|YP_002327701.1| type IV pilin biogenesis protein [Escherichia coli O127:H6 str. E2348/69] gi|300984526|ref|ZP_07177018.1| type II secretion system F domain protein [Escherichia coli MS 200-1] gi|312966234|ref|ZP_07780460.1| bacterial type II secretion system F domain protein [Escherichia coli 2362-75] gi|331645215|ref|ZP_08346326.1| protein transport protein HofC [Escherichia coli M605] gi|331661150|ref|ZP_08362082.1| protein transport protein HofC [Escherichia coli TA206] gi|110341909|gb|ABG68146.1| bacterial type II secretion system protein F [Escherichia coli 536] gi|215263342|emb|CAS07657.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli O127:H6 str. E2348/69] gi|281177324|dbj|BAI53654.1| conserved hypothetical protein [Escherichia coli SE15] gi|300306695|gb|EFJ61215.1| type II secretion system F domain protein [Escherichia coli MS 200-1] gi|312289477|gb|EFR17371.1| bacterial type II secretion system F domain protein [Escherichia coli 2362-75] gi|315299995|gb|EFU59233.1| type II secretion system F domain protein [Escherichia coli MS 16-3] gi|324012267|gb|EGB81486.1| type II secretion system F domain protein [Escherichia coli MS 60-1] gi|330909949|gb|EGH38459.1| type 4 fimbrial assembly protein PilC [Escherichia coli AA86] gi|331045972|gb|EGI18091.1| protein transport protein HofC [Escherichia coli M605] gi|331052192|gb|EGI24231.1| protein transport protein HofC [Escherichia coli TA206] Length = 400 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 22/181 (12%), Positives = 55/181 (30%), Gaps = 22/181 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGVAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + G +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANKLLM 235 Query: 180 R 180 R Sbjct: 236 R 236 >gi|254229262|ref|ZP_04922680.1| bacterial type II secretion system protein F domain [Vibrio sp. Ex25] gi|262393145|ref|YP_003284999.1| MSHA biogenesis protein MshG [Vibrio sp. Ex25] gi|151938186|gb|EDN57026.1| bacterial type II secretion system protein F domain [Vibrio sp. Ex25] gi|262336739|gb|ACY50534.1| MSHA biogenesis protein MshG [Vibrio sp. Ex25] Length = 407 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 21/168 (12%), Positives = 53/168 (31%), Gaps = 6/168 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + +AG+P+ ++ ++ + E V+ G LS ++ + + Sbjct: 71 FSRQLFSLTKAGVPLLRSMRGLLQNCENKQLKEALEDVVSELSNGRGLSSAMQQHSK--- 127 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 S + + G L +AL L+ + +++A I Sbjct: 128 --VFSPLFVSMINVGENTGRLDQALLQLANYYEQELETRKRIKAAMRYPTFVIIFITIAM 185 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 F ++ LV + + +A + + V+ ++ Sbjct: 186 FILNILVIPEFASMFTRFGVELPLPTRILIATSNFFVNYWVLLIVAMI 233 Score = 37.4 bits (85), Expect = 0.81, Method: Composition-based stats. Identities = 11/135 (8%), Positives = 37/135 (27%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 +++G+P++ ++A+ + + ++ + Sbjct: 268 RAQLSRFARTFSLMLKSGVPLNQSLALAGEALGNRFLE-----NRILEMKSAIEAGSTIS 322 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 V + + + + + G + E L +S + K +E + Sbjct: 323 VTAINSKIFTPLVIQMIAVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPLLLVIV 382 Query: 133 IGSLPFCVSTLVYFT 147 G + + Sbjct: 383 AGMVMVLALGIFLPM 397 >gi|291442507|ref|ZP_06581897.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672] gi|291345402|gb|EFE72358.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672] Length = 285 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 63/174 (36%), Gaps = 3/174 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + +R G+ + A+ + D + + + + LG E++ Sbjct: 74 EALSEWTQRLAGLLRLGMGLEQAMITSRKGAPDALAEQITGLSDRLRLGWRPEEALRAFA 133 Query: 74 RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G L++AL +L+ +R+ K ++A + + + Sbjct: 134 DELDDVTADKVTAALILSVNDRGPGLAQALEDLAGTVREEVAKKRGIEADRAKPRTTVRW 193 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + + V F P Y + G ++LG A + + +MR + F Sbjct: 194 MTFITVGVVVA-GFFVPSYTAP-YSTLLGQLVLGFLTAGFVATLALMRQLGAFR 245 >gi|297544540|ref|YP_003676842.1| Type II secretion system F domain-containing protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842315|gb|ADH60831.1| Type II secretion system F domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 403 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 57/161 (35%), Gaps = 11/161 (6%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSL 65 KR + D + AG+P+ A+A + Q + +++ R V E G SL Sbjct: 58 KRVK--IKDIAVFCRQFATLINAGIPIVTALATMKEQVENKRLKNALREVYEEVQKGKSL 115 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S+++ + P+ + ++ G L + + ++ + KV++ Sbjct: 116 SDAMKKQGDVFPV-----LLYNMVEVGEVSGTLDKVMNEMADHYEKENELNQKVKSALTY 170 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 + V L+ P ++++ N L Sbjct: 171 PV---IVSFVAVLVVIFLLTNVLPIFVDLFKNAGVQLPLPT 208 Score = 38.6 bits (88), Expect = 0.39, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMP 77 + + AG+P+ A+ V+ + + SE R E GL LSE + +M + P Sbjct: 271 FTRTLGTLISAGIPLIAAMEVVEKVVGNTIVSEGLRKAQEDIKKGLPLSEPLKKMGIFPP 330 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G+L L + + +E + + Sbjct: 331 M------VIQMISVGESSGSLDSILNKAADFYDGEVDTAVSQMTTLLEPLIIVMLAIVVG 384 Query: 138 FCVSTLVYFTS 148 F V +++ Sbjct: 385 FIVVSIIMPLF 395 >gi|269104071|ref|ZP_06156768.1| MSHA biogenesis protein MshG [Photobacterium damselae subsp. damselae CIP 102761] gi|268163969|gb|EEZ42465.1| MSHA biogenesis protein MshG [Photobacterium damselae subsp. damselae CIP 102761] Length = 405 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 15/162 (9%), Positives = 43/162 (26%), Gaps = 4/162 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + +AG+P+ A+ + +S P+ E + S + Sbjct: 66 LVIFCRQLYSLTKAGIPLLRAIKGLAQSTSHPLLRETLEAVIADLTNGSP----LSVSMK 121 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + + G L +L L+ + ++ + IG Sbjct: 122 QHPRVFTPLFVSMINVGENTGRLDSSLLQLANYYEQEMETRRQIASAMRYPMFVLTSIGL 181 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++ V + + + + + + Sbjct: 182 AMVVLNIKVIPQFASMFSRFGMELPLPTRILIGTSNFFVHYW 223 Score = 39.7 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 11/135 (8%), Positives = 32/135 (23%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 +RAG+P++ A+ + + + + S Sbjct: 266 RAQMARFSRTFALMIRAGVPLNTALQMSAEALGNRYLE-----NRLIEMKSGIEGGASIA 320 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G + + L ++ + K +E + Sbjct: 321 STAVSSGIFPPLVLQMIAVGEETGQVDDLLMEVADFYDREVDYDLKTLTARIEPILLLVV 380 Query: 133 IGSLPFCVSTLVYFT 147 G + + Sbjct: 381 AGMVLLLALGIFLPM 395 >gi|193067501|ref|ZP_03048469.1| general secretion pathway protein GspF [Escherichia coli E110019] gi|192959458|gb|EDV89893.1| general secretion pathway protein GspF [Escherichia coli E110019] Length = 407 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + L+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQASGVYW 229 >gi|209546004|ref|YP_002277894.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538861|gb|ACI58794.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 300 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 67/153 (43%), Gaps = 4/153 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLG 62 ++ R + +FP LD++V + +A + +++ + + V E + ++ LG Sbjct: 146 KMQDRKERISREFPYFLDLVVMTQQAQATLPESLRLYAEAAPGTVMSEEIDQTLKDVALG 205 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + E++ R+ R M +EV + G N E L +R LR R + + Sbjct: 206 TGMVEALQRLERRMTAEEVIRVIRAVIQGEVEGSNRVELLREHARDLRFR---RWEKADR 262 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + E + ++ ++ VS L+ +P + ++ Sbjct: 263 ASEKLKAKIVMPAMMIVVSILLLVLAPAIVEMM 295 >gi|300309698|ref|YP_003773790.1| type II secretion system protein [Herbaspirillum seropedicae SmR1] gi|300072483|gb|ADJ61882.1| bacterial type II secretion system protein [Herbaspirillum seropedicae SmR1] Length = 415 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/167 (10%), Positives = 43/167 (25%), Gaps = 4/167 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 + R + ++AGLP+ A+ + + + I Sbjct: 66 ARRGRRRITDKQIVLFTRQLATMLQAGLPLLQALDIAIRGAGADALGGLLATIRQDVARG 125 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 Q + ++ G L LA ++ ++ KV+A Sbjct: 126 D----SLHAALARHPQRFDALFCQLVRAAESAGVLDSMLARIASYREKSLALRGKVRAAL 181 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 A + ++ + V + + ++ A Sbjct: 182 AYPCAVVLVAVAVTVVIMLWVVPAFEQMFRHFGAELPLPTRIVMSLA 228 >gi|239995643|ref|ZP_04716167.1| general secretion pathway protein F [Alteromonas macleodii ATCC 27126] Length = 408 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 61/178 (34%), Gaps = 14/178 (7%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + V + LPV +A+ + Q ++ V G L++++ + Sbjct: 69 DLALLTRQLATLVESALPVEEALLAVAEQCEKPRQKNMMMAVRSKVVEGHGLADALGQFP 128 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G+L L L+ R+ ++++ + + Sbjct: 129 -----SVFDELYRAMVAAGEKSGHLDTVLNRLADYTERRQQTRSQITQAMIYPSLMLFFA 183 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA--------AFMLIGIMVMRLMI 183 + + T+V G + + D G ++ FMLIGI V+ ++I Sbjct: 184 MGIVLLLLTVVVPKIVGQFDHMGQDLPGITQFLISISTWLQNYGLFMLIGIAVLVVII 241 >gi|261339185|ref|ZP_05967043.1| hypothetical protein ENTCAN_05411 [Enterobacter cancerogenus ATCC 35316] gi|288319032|gb|EFC57970.1| general secretion pathway protein F [Enterobacter cancerogenus ATCC 35316] Length = 402 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 52/150 (34%), Gaps = 9/150 (6%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74 + V A LP+ A+ I Q+ D + + + E G +L ++ S+ R Sbjct: 65 LSMFTRQLSTLVNAALPLESALKAISKQTEDKKLAAMVVEIREKVVEGHTLFDAFSQFPR 124 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + G+L + L L+ R+ MK+K+ + + Sbjct: 125 T-----FDKLYCTLVMAGEKTGHLGDVLEKLAEYNEQRQKMKSKLTQAMVYPIT---LTV 176 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 +S L+ P + + + + Sbjct: 177 VAIAVISILLVAVVPQVIEQFTHMKQQLPI 206 >gi|169627575|ref|YP_001701224.1| hypothetical protein MAB_0471 [Mycobacterium abscessus ATCC 19977] gi|169239542|emb|CAM60570.1| Conserved hypothetical transmembrane protein [Mycobacterium abscessus] Length = 258 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 2/164 (1%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 LD++V +R G A + + + F + LG+++ ++ R Sbjct: 92 LDVVVGELRVGAHPVRAFEIAAVELNGAAGEAFAAIAARARLGVNVDRALPRS--VPARA 149 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + + S+ + G +++ L L++R+ A+V A +A+A ++ LP Sbjct: 150 QWNRITRSWSLAQRHGLAVADLLDACRADLQERQQFTARVNAGLAGPRATAVVLTGLPVA 209 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 L ++VL G LL V G++ + Sbjct: 210 GIGLGQMIGARPLSVLCAGGVGGALLVVGVTLACAGLLWADAIT 253 >gi|326318665|ref|YP_004236337.1| general secretion pathway protein F [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375501|gb|ADX47770.1| general secretion pathway protein F [Acidovorax avenae subsp. avenae ATCC 19860] Length = 411 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 9/159 (5%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVR 74 + V +GLP+ A+ + +S D + + + G + + +++ R Sbjct: 74 LAVWTRQLAGLVSSGLPLERALTALADESDDDRQRHLVATLRAEVNAGSTFARALTAHPR 133 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 E S + + G+L L L+ L +R+ +KAK+ S+ I Sbjct: 134 -----EFSSIYCAVIGAGESSGHLGLVLERLADDLEERQALKAKLIGASLYPAIVTVIAI 188 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 V LV + P V R L VA + Sbjct: 189 V---IVLFLVGYVVPQVAAVFAGSKRALPFLTVAMMALS 224 Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ + + G L+ ++++ R+ Sbjct: 280 FTGTLSMLAGAGVPILKALQAAAETLGNTAMRADALDALVLVREGAPLASALAQKKRFPG 339 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + + G L L + L +A A +E + + Sbjct: 340 ------LVSMFARLGEQTGQLPLMLQRAAAQLSAEVQRRAMQLATILEPLLIVAMGVIVM 393 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 394 LIVLAVLMPI 403 >gi|11498266|ref|NP_069492.1| hypothetical protein AF0658 [Archaeoglobus fulgidus DSM 4304] gi|2649961|gb|AAB90583.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 614 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 17/141 (12%), Positives = 53/141 (37%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 + K + P + + AGL V +A+ + + E R++ G Sbjct: 400 KNRLLTKMEKELPEFMKQLASLNEAGLNVVEALRHLSESELGVLGREIRKIKREVEWGEL 459 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ ++ ++ + Q V+ T++ + ++ +AL S ++ +++A Sbjct: 460 ITSALEKIESRVRSQIVAKAITLLVKAIESTPSIRDALNTASMYSELEVEVRDRIKAQMS 519 Query: 125 EAKASAWIIGSLPFCVSTLVY 145 ++ ++ + ++ Sbjct: 520 MYTIIIYLAFAVFLYTAYILI 540 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 22/180 (12%), Positives = 67/180 (37%), Gaps = 7/180 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHLGL-S 64 R K P+A+++++ + G+P+ + + + EF +++ + Sbjct: 118 RRGKIDSSLPHAVNMMLGMAKGGVPLISIFRFVAENREIFGEISREFDKIVTLVEIFGYD 177 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + P +++ F + GG++ E L S L + + ++ Sbjct: 178 MITAMKYVADTTPSEKLKVFLENFINVYEGGGDVVEYLRAKSEQLLTERETYYTLFFETL 237 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + A ++ + + L+ + ++ V A + +G +++ +I Sbjct: 238 QVYAEIYLALFIVAPLFFLIVLV----VFQMVGSGAMQTFKIVLFAMIPLGSLLLMWLIK 293 >gi|307721764|ref|YP_003892904.1| Flp pilus assembly protein TadB [Sulfurimonas autotrophica DSM 16294] gi|306979857|gb|ADN09892.1| Flp pilus assembly protein TadB [Sulfurimonas autotrophica DSM 16294] Length = 311 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 81/186 (43%), Gaps = 1/186 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +I+ R KF A+ ++V+ ++ G+ A++ V S + + + Sbjct: 124 LQSVIQNRKKKFNKALAVAISVLVKMMKNGIGFEQALSKSVSVSGSKLFRDIFEKFFQEK 183 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + E+ S + +++ +E+ F+ I + + GG S L + + + R+ M+ KV Sbjct: 184 NTIGEMEAFSNLNQFVHSKELRIFALAIKIGRESGGQFSNTLEKVEKTINYREKMQEKVD 243 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM-NVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ E ++++ + + + G + + + G L + ++ GIM+ Sbjct: 244 VVTREGSVGSYVVVLITIFLYFALNGNFDGKLHHYFMESQYGRFQLLGISLWVFTGIMIN 303 Query: 180 RLMINF 185 +++ Sbjct: 304 KMLTKV 309 >gi|124515782|gb|EAY57291.1| putative general secretion pathway protein F [Leptospirillum rubarum] gi|206602161|gb|EDZ38643.1| Putative general secretion pathway protein F [Leptospirillum sp. Group II '5-way CG'] Length = 400 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 59/184 (32%), Gaps = 14/184 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQ 59 ++ +R AK D + V +G+PV +++ I+ Q DP+ S + E Sbjct: 51 LRQTGGRRRAK-AGDIALFTRQMGILVGSGIPVVESLGAILDQGLPDPMGSTVAAIREDV 109 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G L +++S R S + + G L L LS L + + KV Sbjct: 110 KEGQPLHQALSLHPRI-----FSDLYVNMIRAGEESGTLDVMLDRLSDFLEKQVETRRKV 164 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI--- 176 + + V L+ P + L + + G+ Sbjct: 165 LGSLFYPLILMMVGILM---VIFLLTVVMPRITAIFKGLNAALPLPTILLMDLSDGLRQE 221 Query: 177 -MVM 179 + Sbjct: 222 AFWI 225 Score = 41.6 bits (96), Expect = 0.048, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 43/137 (31%), Gaps = 7/137 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAV-IVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 D + ++ G+P+ A+ + ++ ++ + E G SL ++ R Sbjct: 263 QDQISRFGRTLSVLLKGGVPLQRALEIGTSVLTNQTLKDAAIKAREDVRNGESLGSALKR 322 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 V + + + G L E L ++ + +E + Sbjct: 323 ------SPWVPRMAVHMIQTGEKSGKLEELLLKMAEGYESEVSQTVATLTSIIEPVMILF 376 Query: 132 IIGSLPFCVSTLVYFTS 148 I + F V ++ Sbjct: 377 IGCIVLFMVLAVLLPIF 393 >gi|294813377|ref|ZP_06772020.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064] gi|326441910|ref|ZP_08216644.1| type II secretion system F protein [Streptomyces clavuligerus ATCC 27064] gi|294325976|gb|EFG07619.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064] Length = 295 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 62/162 (38%), Gaps = 1/162 (0%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + +RAG+ A+ G + + + V G + ++ R ++ Sbjct: 124 VAAELRAGIQPGPALLSAAGATDA-LGTAGAPVGAAARFGGDVPRALREAAREPGADGLA 182 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + V G L+ AL L LR ++ + +++A A+A+ ++ LP Sbjct: 183 GVAACWRVAVDGGAGLAAALDRLEEALRADRDQREELRAQLAGARATVGLLALLPVVALA 242 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + + + VL++ P G + L + A G+ ++ Sbjct: 243 MGWALGADPLRVLLHTPAGLLCLLLGGALEAAGLWWAARIVR 284 >gi|226355746|ref|YP_002785486.1| Type 4 pilus assembly protein PilC [Deinococcus deserti VCD115] gi|226317736|gb|ACO45732.1| putative Type 4 pilus assembly protein PilC [Deinococcus deserti VCD115] Length = 406 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/163 (11%), Positives = 54/163 (33%), Gaps = 6/163 (3%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + + AG+P+ ++A++ Q + + + G+ LSE+I++ + Sbjct: 74 QLATLINAGVPLVQSLAILQKQIEHKGFQKVVKDLRGDVESGIPLSEAIAKYPKI----- 128 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + G L L ++ ++ K+++ + + + Sbjct: 129 FDRLYVNLIRAGETSGTLDAILERIASFQEKDLALRGKIKSAMTYPVIVLIFALGITYFL 188 Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 T + + L + +A + L + ++ Sbjct: 189 LTTIVPQFGMILVQLNAPLPFITKMLMAVSDFLKSSTWVIALV 231 >gi|15838119|ref|NP_298807.1| general secretory pathway protein F [Xylella fastidiosa 9a5c] gi|9106552|gb|AAF84327.1|AE003981_9 general secretory pathway protein F [Xylella fastidiosa 9a5c] Length = 405 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 58/173 (33%), Gaps = 7/173 (4%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVR 74 + + + AG P+ A++++ + R V + G LS ++ R Sbjct: 68 LIHFTQQLAALLGAGQPLDRALSILTDLPDNEKSRRIIGDVCDIVRGGTPLSIALER--- 124 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 S ++ + GGN+ E L L+ L + ++AKV + +++G Sbjct: 125 --QHGVFSRLYVTMARAGESGGNMPETLQRLADYLERNQVVRAKVINALIYPVILIFVVG 182 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + V L + GV A IG L+ + Sbjct: 183 GALAFLLGYVVPQFGAMYESL-DVALPWFTQGVLALGHFIGDWWFLLLAVIGI 234 >gi|315656392|ref|ZP_07909281.1| type II secretion system protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492951|gb|EFU82553.1| type II secretion system protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 303 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/146 (12%), Positives = 52/146 (35%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R + + P+ ++++ +V AG P+ A+ + + + E +++ Sbjct: 150 LTGAARRRQLRLNQELPDVIELLALAVGAGEPLYGALHRVSARCAGVAGQELEKILAAAD 209 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ S++ + ++ I + G L+ L + R + + Sbjct: 210 NGDSLAPSLTAARARNDSEILAHLIDAIVSALERGSPLAGVLRSQVADSRAVARTQLLTE 269 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146 E ++ + + Sbjct: 270 GGKKEVLMMVPVVFLILPLTVVFALY 295 >gi|284922986|emb|CBG36078.1| type II secretion system protein F [Escherichia coli 042] Length = 407 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + ML+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDALQASGVYW 229 >gi|206578970|ref|YP_002240369.1| pullulanase secretion protein PulF [Klebsiella pneumoniae 342] gi|206568028|gb|ACI09804.1| pullulanase secretion protein PulF [Klebsiella pneumoniae 342] Length = 404 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/143 (12%), Positives = 41/143 (28%), Gaps = 7/143 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D + V AG+P+ A+ + Q R + L Sbjct: 65 DLALLTRQLATLVAAGIPLEKALDAVAQQCE----KAPLRTLMAGVRSKVLEGHSLAEAM 120 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + G+L L L+ R+ ++A++Q + + Sbjct: 121 RGYPACFDGLFCAMVAAGETSGHLDGVLNRLADYTEQRQQLRARLQQAMIYPI---VLTL 177 Query: 135 SLPFCVSTLVYFTSPGYMNVLIN 157 ++ L+ P + ++ Sbjct: 178 VAISVIAILLSTVVPKVVEQFVH 200 >gi|50122030|ref|YP_051197.1| general secretion pathway protein F [Pectobacterium atrosepticum SCRI1043] gi|49612556|emb|CAG76006.1| general secretion pathway protein F [Pectobacterium atrosepticum SCRI1043] Length = 408 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 54/169 (31%), Gaps = 9/169 (5%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLS 64 +++ D + V A LP+ +A+ + QS + V G S Sbjct: 60 RRKIRISTSDLALLTRQLATLVAASLPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHS 119 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L++++ + + G+L L L+ R+ M++++Q + Sbjct: 120 LADAMKCFP-----SSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMI 174 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + VS L+ P + I+ + L M Sbjct: 175 YP---CVLTVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMS 220 >gi|330819179|ref|YP_004348041.1| type II secretion system protein [Burkholderia gladioli BSR3] gi|327371174|gb|AEA62529.1| type II secretion system protein [Burkholderia gladioli BSR3] Length = 293 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 1/136 (0%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESIS 70 P LD + +V AGL ++ A+ V + +RSEF V+ GL+ ++++ Sbjct: 146 IRKQLPVYLDFLTLAVEAGLNINGAIQKAVEKGPDGALRSEFEHVLRDLKSGLNRADALR 205 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 R ++E++ F + ++G L+ L S R + +A+ A+ K Sbjct: 206 RFDERQDIKEITNFVGAVIQAERMGSGLAGTLRFQSEQRRAERFQRAEKLAMEAPVKLVF 265 Query: 131 WIIGSLPFCVSTLVYF 146 ++ + ++ F Sbjct: 266 PLMMFIFPVTFVVLGF 281 >gi|315655694|ref|ZP_07908592.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333] gi|315489758|gb|EFU79385.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333] Length = 303 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/146 (13%), Positives = 53/146 (36%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R + + P+ ++++ +V AG P+ A+ + + +D E +++ Sbjct: 150 LTGAARRRQLRLNQELPDVIELLALAVGAGEPLYGALHRVSARCTDVAGQELEKILAAAD 209 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ S++ + ++ I + G L+ L + R + + Sbjct: 210 NGDSLAPSLTAARARNDSEILAHLIDAIVSALERGSPLASVLRSQVADSRAVARTQLLTE 269 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146 E ++ + + Sbjct: 270 GGKKEVLMMVPVVFLILPLTVVFAMY 295 >gi|300914228|ref|ZP_07131544.1| Type II secretion system F domain protein [Thermoanaerobacter sp. X561] gi|300889163|gb|EFK84309.1| Type II secretion system F domain protein [Thermoanaerobacter sp. X561] Length = 403 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 55/169 (32%), Gaps = 9/169 (5%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSE 67 + D + AG+P+ ++ + Q + +++ R V E G +LS+ Sbjct: 58 KKVKVKDIAVFCRQFATLINAGIPIVTSLVTMREQVENKRLKNALREVYEEVKKGRTLSD 117 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ R P+ + ++ G L + + ++ + K+++ Sbjct: 118 AMKRHSDVFPM-----LLYNMVEVGEVSGTLDKVMNEMAEHYEKENELNQKIKSALTYPV 172 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + V L+ P ++ + N L + I Sbjct: 173 ---IVSIVAILVVIFLLTNVLPIFVGMFENAGVQLPLPTRILLAISGSI 218 Score = 35.1 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 46/131 (35%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P+ A+ V+ + V +E ++ + GL LSE + R+ + P Sbjct: 271 FTRTLGTLISAGVPLMKAMEVVEKVVGNTVVAEGLKKAQDDIKKGLPLSEPLKRIGIFPP 330 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G+L L + + +E + + Sbjct: 331 M------VIQMIGIGESSGSLDSILNKTADFYDGEVDTAVSQMTTLLEPLIIVMLATVVG 384 Query: 138 FCVSTLVYFTS 148 F V +++ Sbjct: 385 FIVISIIMPLF 395 >gi|59712794|ref|YP_205570.1| pilus assembly protein PilC [Vibrio fischeri ES114] gi|59480895|gb|AAW86682.1| pilus assembly protein PilC [Vibrio fischeri ES114] gi|83338469|gb|ABC11894.1| PilC [Vibrio fischeri ES114] Length = 412 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 24/169 (14%), Positives = 58/169 (34%), Gaps = 14/169 (8%) Query: 1 MKHLIKKRTAKFLD--------DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSE 51 +K + K+ + F D + + +G+PV ++ +I + ++S Sbjct: 51 IKKIKKRSISSFEKMKHAVKRKDITLFTRQLSTMLASGVPVVQSLHLIAENNTKAEMKSI 110 Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111 +V + G LS+++S F + + G+L++A A L+ Sbjct: 111 LHQVCLSIEAGTQLSKALS-----TSCSHFDSFYIDLIATGEETGSLAQAFARLAEYREK 165 Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 +++KV + + ++ + T V + Sbjct: 166 SDALRSKVIKAMIYPTMVFLVAITVTILMLTFVIPEFENIFKGFGAELP 214 Score = 42.0 bits (97), Expect = 0.039, Method: Composition-based stats. Identities = 11/135 (8%), Positives = 36/135 (26%), Gaps = 5/135 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + S +GLP+ ++ + + E ++ R Sbjct: 276 AAIAKFSRTLATSFSSGLPILHSLQTTSKTAGNLYYQEAILSVQQHTAAGMPLYIAMR-- 333 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + + G L + L ++ + + + +E ++ Sbjct: 334 ---HTEVFPEMVLQMVMIGEESGKLDDMLNKIAHVYEEDVDNTVDNLGKILEPFIIVFLG 390 Query: 134 GSLPFCVSTLVYFTS 148 + V ++ Sbjct: 391 TMIGGLVVSMYLPIF 405 >gi|306815298|ref|ZP_07449447.1| type IV pilin biogenesis protein [Escherichia coli NC101] gi|222031935|emb|CAP74673.1| Protein transport protein hofC [Escherichia coli LF82] gi|305850960|gb|EFM51415.1| type IV pilin biogenesis protein [Escherichia coli NC101] gi|312944710|gb|ADR25537.1| type IV pilin biogenesis protein [Escherichia coli O83:H1 str. NRG 857C] gi|324008339|gb|EGB77558.1| type II secretion system F domain protein [Escherichia coli MS 57-2] Length = 400 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 22/181 (12%), Positives = 57/181 (31%), Gaps = 22/181 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPCKQWQALLQSLAHDLEQGVAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + G +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANKLLM 235 Query: 180 R 180 R Sbjct: 236 R 236 >gi|261251593|ref|ZP_05944167.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio orientalis CIP 102891] gi|260938466|gb|EEX94454.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio orientalis CIP 102891] Length = 284 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 56/141 (39%), Gaps = 3/141 (2%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSL 65 + + P+ALD++V V +G + + + S + E+ + S Sbjct: 131 RQEIAKNIPDALDLMVVCVSSGQSLEATFNTVGQEMKSISPSLSREWLVTATEMAVLDSP 190 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + + L EV+ +S + G +++AL ++ R ++ + + Sbjct: 191 QVALTNLDTRLALPEVNNMIVTMSQALKFGTPMADALKLIASDNRQYHMLELEEWVGKIP 250 Query: 126 AKASAWIIGSLPFCVSTLVYF 146 AK S ++ + V ++ Sbjct: 251 AKMSFPLVVLIMLPVVVIIVA 271 >gi|325498533|gb|EGC96392.1| General secretion pathway protein F [Escherichia fergusonii ECD227] Length = 407 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 53/167 (31%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+ G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMVLRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + L+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRALIAMSDALQTSGVYW 229 >gi|229514051|ref|ZP_04403513.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae TMA 21] gi|254291779|ref|ZP_04962564.1| type IV pilin biogenesis protein PilC [Vibrio cholerae AM-19226] gi|150422291|gb|EDN14253.1| type IV pilin biogenesis protein PilC [Vibrio cholerae AM-19226] gi|229349232|gb|EEO14189.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae TMA 21] Length = 408 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 49/149 (32%), Gaps = 6/149 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 D + + G+P+ A+ ++ ++S ++ ++ G LS+++ Sbjct: 67 SKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRT 126 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + ++ GNL E L+ + ++AKV + Sbjct: 127 ASAH-----FDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVL 181 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 + + + + T+V + Sbjct: 182 VALGVSYLMLTMVIPEFESMFKGFGAELP 210 Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 13/131 (9%), Positives = 35/131 (26%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + S AG+P+ ++ S + V G+ + ++ Sbjct: 277 FSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVHRDTAAGMPMYIAMRN------ 330 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L + L ++ I + +E ++ + Sbjct: 331 TDAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVG 390 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 391 GLVVAMYLPIF 401 >gi|308178277|ref|YP_003917683.1| hypothetical protein AARI_24950 [Arthrobacter arilaitensis Re117] gi|307745740|emb|CBT76712.1| hypothetical membrane protein [Arthrobacter arilaitensis Re117] Length = 224 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/166 (10%), Positives = 53/166 (31%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +R+GL A+ ++ + + L+ S + Sbjct: 51 VIRELSALLRSGLSFYPAIDALLDAEEEHGKIVGALKELQATHRLNNSAPRGDALDGNQS 110 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 V + + ++ G +L++ L L+ L + + A KA+ ++ LP Sbjct: 111 PAVQRLHWCLELSARSGASLADVLERLAEDLENALVAQQAFDAAMAGPKATIKLLTWLPL 170 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + + + + + + A + + + ++ Sbjct: 171 VGFGFGMLLGIDVLGTIASSWAAQLSVLIGAVLWIANRIWCQRLMR 216 >gi|301048229|ref|ZP_07195264.1| general secretion pathway protein F [Escherichia coli MS 185-1] gi|300299923|gb|EFJ56308.1| general secretion pathway protein F [Escherichia coli MS 185-1] gi|315297665|gb|EFU56942.1| general secretion pathway protein F [Escherichia coli MS 16-3] gi|324005478|gb|EGB74697.1| general secretion pathway protein F [Escherichia coli MS 57-2] Length = 407 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + ML+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDALQASGVYW 229 >gi|218691253|ref|YP_002399465.1| General secretion pathway protein F [Escherichia coli ED1a] gi|218428817|emb|CAR09761.2| General secretion pathway protein F [Escherichia coli ED1a] Length = 407 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + ML+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDALQASGVYW 229 >gi|193222352|emb|CAL62101.2| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshG (pilus type IV) [Herminiimonas arsenicoxydans] Length = 409 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/170 (11%), Positives = 50/170 (29%), Gaps = 6/170 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 + + ++AG+P+ +A + + + F V++ L + Sbjct: 64 KIRSIDVQL--FSRQLYTLLKAGVPIMRGLAGLQESA---INKSFGLVVKDLRESLD-AG 117 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + S F T + ++ G L E L L ++M+ +++ Sbjct: 118 RELSAAMRRHPKVFSPFYTNMVRVGEMTGRLEEVFLRLFDYLEFDRDMRQRIRTALRYPI 177 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + ++ V T + L + + ++ Sbjct: 178 FVVSALTVAMIVINLFVIPTFAKVYAGFKAELPFMTKLLIGTSNFMVQYW 227 Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 9/132 (6%), Positives = 35/132 (26%), Gaps = 5/132 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 S ++G+P+ + V+ + + + + S + Sbjct: 273 LARFARSFALSSKSGVPIVQGLNVVAQTVGNTY-----IASRIEQMRDGVERGESILRTA 327 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + + G L + ++ + + + K + +E + Sbjct: 328 VTTGVFTPVVLQMIAIGEETGELDSLMDEIAAMYEREVDYELKTLSAQIEPILIIGLGIL 387 Query: 136 LPFCVSTLVYFT 147 + + Sbjct: 388 VVVLALGVFLPI 399 >gi|327484917|gb|AEA79324.1| Type IV fimbrial assembly protein PilC [Vibrio cholerae LMA3894-4] Length = 408 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 49/149 (32%), Gaps = 6/149 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 D + + G+P+ A+ ++ ++S ++ ++ G LS+++ Sbjct: 67 SKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILTQITKSVEAGTPLSKAMRT 126 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + ++ GNL E L+ + ++AKV + Sbjct: 127 ASAH-----FDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVL 181 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 + + + + T+V + Sbjct: 182 VALGVSYLMLTMVIPEFESMFKGFGAELP 210 Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 13/131 (9%), Positives = 35/131 (26%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + S AG+P+ ++ S + V G+ + ++ Sbjct: 277 FSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAAGMPMYIAMRN------ 330 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L + L ++ I + +E ++ + Sbjct: 331 TDAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVG 390 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 391 GLVVAMYLPIF 401 >gi|153802801|ref|ZP_01957387.1| type IV pilin biogenesis protein PilC [Vibrio cholerae MZO-3] gi|124121666|gb|EAY40409.1| type IV pilin biogenesis protein PilC [Vibrio cholerae MZO-3] Length = 408 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 49/149 (32%), Gaps = 6/149 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 D + + G+P+ A+ ++ ++S ++ ++ G LS+++ Sbjct: 67 SKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRT 126 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + ++ GNL E L+ + ++AKV + Sbjct: 127 ASAH-----FDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVL 181 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 + + + + T+V + Sbjct: 182 VALGVSYLMLTMVIPEFESMFKGFGAELP 210 Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 13/131 (9%), Positives = 36/131 (27%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + S AG+P+ ++ S + V G+ + ++ Sbjct: 277 FSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVHRDTAAGMPMYIAMRN------ 330 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + + G L + L ++ I + +E ++ + Sbjct: 331 TEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVG 390 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 391 GLVVAMYLPIF 401 >gi|153214072|ref|ZP_01949206.1| type IV pilin biogenesis protein PilC [Vibrio cholerae 1587] gi|153830647|ref|ZP_01983314.1| type IV pilin biogenesis protein PilC [Vibrio cholerae 623-39] gi|229527031|ref|ZP_04416426.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae 12129(1)] gi|124115498|gb|EAY34318.1| type IV pilin biogenesis protein PilC [Vibrio cholerae 1587] gi|148873856|gb|EDL71991.1| type IV pilin biogenesis protein PilC [Vibrio cholerae 623-39] gi|229335428|gb|EEO00910.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae 12129(1)] Length = 408 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 49/149 (32%), Gaps = 6/149 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 D + + G+P+ A+ ++ ++S ++ ++ G LS+++ Sbjct: 67 SKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRT 126 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + ++ GNL E L+ + ++AKV + Sbjct: 127 ASAH-----FDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVL 181 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 + + + + T+V + Sbjct: 182 VALGVSYLMLTMVIPEFESMFKGFGAELP 210 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 13/131 (9%), Positives = 35/131 (26%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + S AG+P+ ++ S + V G+ + ++ Sbjct: 277 FSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAAGMPMYIAMRN------ 330 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L + L ++ I + +E ++ + Sbjct: 331 TDAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVG 390 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 391 GLVVAMYLPIF 401 >gi|330862289|emb|CBX72450.1| hypothetical protein YEW_HH31820 [Yersinia enterocolitica W22703] Length = 203 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 59/147 (40%), Gaps = 2/147 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 +K+++ KRT L P +DI V++G+ + ++++ + +++ Sbjct: 46 VKNIVAKRTKSLLRSLPFFIDITAACVQSGMTIDNSLSYSAKKFELINADLSLIMLKVTR 105 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + L +I + E+ F + + G + E L LS+ +R+ + + + Sbjct: 106 RAEINGLENAIKEFNQSSTELEIRMFCSALQYSISFGATVYEQLIKLSKDMREMQLLVTE 165 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVY 145 + + AK + + + LV Sbjct: 166 EKISKLTAKLTIPLFLFILIPFIVLVI 192 >gi|104783622|ref|YP_610120.1| type IV fimbrial assembly protein [Pseudomonas entomophila L48] gi|95112609|emb|CAK17337.1| type IV fimbrial assembly protein [Pseudomonas entomophila L48] Length = 402 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 25/174 (14%), Positives = 55/174 (31%), Gaps = 19/174 (10%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P + + AG+P+ A V+ + + R+ + GL L+E++ R Sbjct: 66 PGFSRQLATLLTAGVPLLQAFEVMARSTVDSGMAVLLARLKQDVAAGLGLAEALQRHPA- 124 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + G L L ++ +L R+ ++ KV+ + Sbjct: 125 ----WFDALYCNLVRVGEQSGTLDRQLEQMAGMLEKRQALRQKVRKAMLYPAVLLLTGLG 180 Query: 136 LPFCVSTLVYFTSPGYMNVL-------------INDPRGHMLLGVAAAFMLIGI 176 + + V G ++ G+ L + ++GI Sbjct: 181 VAALLLLEVVPRFQGLFASFDKALPAFTQWVIDLSTGLGNHLGWLVLLITVLGI 234 Score = 34.7 bits (78), Expect = 5.4, Method: Composition-based stats. Identities = 16/136 (11%), Positives = 36/136 (26%), Gaps = 5/136 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + S AG+ + DA+A + S E + QH+ S + Sbjct: 266 QAALARFARSLATSYAAGVALLDALATVAP-VSGNCLHERAILALRQHVANGASLQQAME 324 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G L L + ++ + + +E + Sbjct: 325 ADGLFPP----LLRQLVAVGEASGTLDTMLDKAALHYEEQVSQALEQLTTLLEPAIVLIL 380 Query: 133 IGSLPFCVSTLVYFTS 148 + V + Sbjct: 381 GLLVGGLVVAMYLPIF 396 >gi|77918004|ref|YP_355819.1| general secretory pathway protein F [Pelobacter carbinolicus DSM 2380] gi|77544087|gb|ABA87649.1| general secretory pathway protein F [Pelobacter carbinolicus DSM 2380] Length = 408 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 21/176 (11%), Positives = 53/176 (30%), Gaps = 7/176 (3%) Query: 10 AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSE 67 + +D + +AG+P+ A+ + + P+ +E V++ G LS Sbjct: 62 RRIEPEDLILFCRQMYSLTKAGVPLLRALRGMTESACKPIMAETLLAVLDDLESGHDLSS 121 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ R + P + + G L ++ ++ L K +++A Sbjct: 122 ALRRHSKVFPP-----LLVNMIQVGESSGRLDDSFNEVATYLIREKQTADQIKAALRYPS 176 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 I ++ V + + + + L+ Sbjct: 177 FVLVAISIAIAIITLFVIPAFEKLFKSQGAQLPLPTRIILGISNFAVSWWWAILIA 232 >gi|168264008|ref|ZP_02685981.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205347510|gb|EDZ34141.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 400 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAQQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + +L G L+E L+R + ++ + V+ Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPV---I 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183 I+ V +++F P + + + LL + G L++ Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYCSFNTPLPLLTRGIIAIAQWGSAWGWLIL 221 >gi|56412416|ref|YP_149491.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361352|ref|YP_002140987.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56126673|gb|AAV76179.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197092827|emb|CAR58253.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 400 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + +L G L+E L+R + ++ + V+ Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPV---I 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183 I+ V +++F P + + + LL + G L++ Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGWLIL 221 >gi|71906519|ref|YP_284106.1| type II secretion system protein [Dechloromonas aromatica RCB] gi|71846140|gb|AAZ45636.1| type II secretion system protein [Dechloromonas aromatica RCB] Length = 406 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 6/160 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMP 77 + +++G+P+ A++ + +++ E R V E+ G LS S++R + Sbjct: 70 FSRQLHTLLKSGVPIMRALSGLQESATNQAMREVIRDVRESLEAGRELSVSLARHPK--- 126 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + F + + G L E L L + M+ +V++ + Sbjct: 127 --VFNSFYISMVRVGEATGLLDEIFLRLFEHLEFERYMREQVKSALRYPMFVVIAMAVAI 184 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 V+ V + + + + ++ Sbjct: 185 VVVNIFVIPAFAKVFQGFGAELPLMTRILLGFSDFMVAWW 224 >gi|84385699|ref|ZP_00988730.1| putative TadC [Vibrio splendidus 12B01] gi|84379679|gb|EAP96531.1| putative TadC [Vibrio splendidus 12B01] Length = 290 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 63/157 (40%), Gaps = 4/157 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIET 58 + K + P LD++ V G+ + ++ + + D + + Sbjct: 135 IASRGKSNISHISSRLPFLLDLMNVCVHTGMTLEASLEYLSNELKMVDENLAFVVQTTSE 194 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + L +++S +P E F ++ + G ++ LA+L+ +R+ ++ + Sbjct: 195 RAKVVGLDKALSEFYDLVPTTEAQSFVMTLTQSLKYGSSVGAVLASLASDIREINMLELE 254 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + M AK S +I + + L+ PG M +L Sbjct: 255 EKIGKMGAKMSVPMIAFIMIPIVILIAA--PGIMRML 289 >gi|254228552|ref|ZP_04921977.1| general secretion pathway protein F [Vibrio sp. Ex25] gi|262392664|ref|YP_003284518.1| general secretion pathway protein F [Vibrio sp. Ex25] gi|151938934|gb|EDN57767.1| general secretion pathway protein F [Vibrio sp. Ex25] gi|262336258|gb|ACY50053.1| general secretion pathway protein F [Vibrio sp. Ex25] Length = 405 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 20/162 (12%), Positives = 53/162 (32%), Gaps = 6/162 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 + + V++G+P+ + + + Q+ +RS V G L++S + Sbjct: 64 TSELALITRQLSTLVQSGMPLEECLRAVSEQAEKPRIRSMLAAVRSKVTEGYPLADSFAD 123 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + G+L L L+ + +R+ M++K+ + Sbjct: 124 YP-----HVFDELYRSMVAAGEKSGHLDTVLERLADYVENRQKMRSKLLQAMIYPVVLVV 178 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + + V + + + +AA+ + Sbjct: 179 FAVVIVSFLLATVVPKIIEPIIQMGQELPQSTQFLLAASEFV 220 >gi|302539257|ref|ZP_07291599.1| integral membrane protein [Streptomyces sp. C] gi|302448152|gb|EFL19968.1| integral membrane protein [Streptomyces sp. C] Length = 305 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 22/179 (12%), Positives = 58/179 (32%), Gaps = 4/179 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++R + L+ + AG+ + + + P+ + R + E G+ Sbjct: 104 AAEQRIERLE-AIGQWLNGLAGIHTAGISLVQTIRASARNAPAPIAANVRALDERLRSGM 162 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQS-QLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++ + + V + + + +G LS AL L+ + + +++ Sbjct: 163 DSKQAFALFADELGDGVVDHVALLFQSHAANMGPGLSTALEALAVTIHQQAADARDIESD 222 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + + S+ I+ V + P G + L + + +R Sbjct: 223 RAKIRKSSRIVSI--VICIVFVGCMLNEAWSAWYQSPAGQLALAILGGLFAWTLSWLRR 279 >gi|222034683|emb|CAP77425.1| hypothetical type II secretion proteinGspF [Escherichia coli LF82] gi|312947521|gb|ADR28348.1| General secretion pathway protein F [Escherichia coli O83:H1 str. NRG 857C] Length = 407 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + ML+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDALQASGVYW 229 >gi|209920434|ref|YP_002294518.1| putative type II secretion protein [Escherichia coli SE11] gi|209913693|dbj|BAG78767.1| putative type II secretion protein [Escherichia coli SE11] Length = 407 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 54/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSNSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + L+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQASGVYW 229 >gi|156975928|ref|YP_001446835.1| hypothetical protein VIBHAR_03694 [Vibrio harveyi ATCC BAA-1116] gi|156527522|gb|ABU72608.1| hypothetical protein VIBHAR_03694 [Vibrio harveyi ATCC BAA-1116] Length = 407 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 21/168 (12%), Positives = 51/168 (30%), Gaps = 8/168 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + +AG+P+ ++ ++ + E V+ G LS + Sbjct: 71 FSRQLFSLTKAGVPLLRSMRGLLQNCENKQLKEALEEVVAELSNGRGLSSA-----MQPH 125 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + S + + G L +AL L+ + +++A I Sbjct: 126 TKVFSPLFVSMINVGENTGRLDQALLQLANYYEQELETRKRIKAAMRYPTFVIVFITIAM 185 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM--VMRLMI 183 F ++ LV + + +A + + ++ +I Sbjct: 186 FILNILVIPEFASMFTRFGVELPLPTRILIATSSFFVNYWGLLIAAII 233 Score = 37.4 bits (85), Expect = 0.81, Method: Composition-based stats. Identities = 11/135 (8%), Positives = 37/135 (27%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 +++G+P++ ++A+ + + ++ + Sbjct: 268 RAQLSRFARTFSLMLKSGVPLNQSLALAGEALGNKFLE-----NRILEMKAAIEAGSTIS 322 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 V + + + + + G + E L +S + K +E + Sbjct: 323 VTAINSKIFTPLVIQMIAVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPLLLVIV 382 Query: 133 IGSLPFCVSTLVYFT 147 G + + Sbjct: 383 AGMVMVLALGIFLPM 397 >gi|120612613|ref|YP_972291.1| general secretion pathway protein F [Acidovorax citrulli AAC00-1] gi|120591077|gb|ABM34517.1| general secretion pathway protein F [Acidovorax citrulli AAC00-1] Length = 411 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 53/164 (32%), Gaps = 6/164 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVR 74 + V +GLP+ A+ + +S D + + + G + + +++ R Sbjct: 74 LAVWTRQLAGLVSSGLPLERALTALADESDDDRQRHLVATLRAEVNAGSTFARALTAHPR 133 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 E S + + G+L L L+ L +R+ +KAK+ S+ I Sbjct: 134 -----EFSSIYCAVIGAGESSGHLGLVLERLADDLEERQALKAKLIGASLYPAIVTVIAI 188 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + V + +A + + Sbjct: 189 VIVLFLVGYVVPQVAAVFAGSKRALPFLTVAMMALSDAVRSYGW 232 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ + + G L+ ++++ R+ Sbjct: 280 FTGTLSMLAGAGVPILKALQAAAETLGNTAMRADALDALVLVREGAPLASALAQKKRFPG 339 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + + G L L + L +A A +E + + Sbjct: 340 ------PVSMFARLGEQTGQLPLMLQRAAAQLSAEVQRRAMQLATILEPLLIVAMGVIVM 393 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 394 LIVLAVLMPI 403 >gi|330465092|ref|YP_004402835.1| type ii secretion system f domain-containing protein [Verrucosispora maris AB-18-032] gi|328808063|gb|AEB42235.1| type ii secretion system f domain protein [Verrucosispora maris AB-18-032] Length = 301 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/180 (10%), Positives = 58/180 (32%), Gaps = 3/180 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++R ++ + G + A+ VG + + ++ E R + G Sbjct: 104 RAEQRAIARIEAVGEWTRRLKDVSATGQGLQQAIIGTVGTAPEEIQDEVRLLAARLQAGW 163 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQS-QLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++ + + + G L + L +++ + +++A Sbjct: 164 LARSALLAFADEIGDPVCDQVVAALILHLTDRGERLGDVLGSIASAAAAEVTTRREIEAK 223 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + + + + F + Y+ P G +++ + A + + +R M Sbjct: 224 RTQPRFAVRFLTGMTLATIAYGLF-NAEYVQP-YGTPFGQLVMALLGAAFVGLLAWVRSM 281 >gi|328758435|gb|EGF72051.1| hypothetical protein HMPREF9563_00343 [Propionibacterium acnes HL020PA1] Length = 256 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 60/171 (35%), Gaps = 5/171 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + A + V G S A+ + + Q +G S+S+++ Sbjct: 83 REVARATRALAGRVSVGEIPSVALEHVADDVE-----VLAQARRAQAVGGSVSDALIATS 137 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + + + + G L+ A +++ R ++A + + A+AS I+ Sbjct: 138 RQPGMAGLVPLAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIM 197 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 G LP + + M L G L + +G++ + + Sbjct: 198 GLLPLVGLLMGHVVGAHPMVFLTTTWLGRACLLGSTLLACVGVLWSESLAD 248 >gi|254226637|ref|ZP_04920217.1| type IV pilin biogenesis protein PilC [Vibrio cholerae V51] gi|297581049|ref|ZP_06942974.1| type IV pilin biogenesis protein PilC [Vibrio cholerae RC385] gi|125620856|gb|EAZ49210.1| type IV pilin biogenesis protein PilC [Vibrio cholerae V51] gi|297534875|gb|EFH73711.1| type IV pilin biogenesis protein PilC [Vibrio cholerae RC385] Length = 408 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/148 (12%), Positives = 49/148 (33%), Gaps = 6/148 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D + + G+P+ A+ ++ ++S ++ ++ G LS+++ Sbjct: 68 KDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTA 127 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + ++ GNL E L+ + ++AKV + + Sbjct: 128 SAH-----FDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLV 182 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR 160 + + + T+V + Sbjct: 183 ALGVSYLMLTMVIPEFESMFKGFGAELP 210 Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 13/131 (9%), Positives = 36/131 (27%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + S AG+P+ ++ S + V G+ + ++ Sbjct: 277 FSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAAGMPMYIAMRN------ 330 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + + G L + L ++ I + +E ++ + Sbjct: 331 TEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVG 390 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 391 GLVVAMYLPIF 401 >gi|323960853|gb|EGB56473.1| general secretion pathway protein F [Escherichia coli H489] Length = 407 Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + ML+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDALQASGVYW 229 >gi|238784555|ref|ZP_04628562.1| Type II secretion system protein [Yersinia bercovieri ATCC 43970] gi|238714521|gb|EEQ06526.1| Type II secretion system protein [Yersinia bercovieri ATCC 43970] Length = 365 Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 54/161 (33%), Gaps = 9/161 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + + ++AGLP+ ++ ++ + P R + + + G SLSE+++ Sbjct: 25 ERLVTVTRQLATLLQAGLPLVHSLQLLAKEMDALPWRCLLQEISQQVSQGQSLSEAMTHY 84 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R P + +L GNL + L ++ ++ KV I Sbjct: 85 PRIFP-----RLYPPVIAMGELTGNLEQCCIQLVEHQERQQKLQKKVIKALKYPVFVCII 139 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + + +V + P L + +M Sbjct: 140 ALVVSVLMLVMVLPEFAQIYQS-FDTP--LPTLTASLLWMS 177 Score = 35.1 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 42/134 (31%), Gaps = 7/134 (5%) Query: 16 FPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + + AGLP++ + ++ S++ R + + + G L ++ + Sbjct: 231 LSQIFQTLAITQHAGLPLTAGLDAALLSASNETYRQALQHIQRQINQGSPLYTALDQYHL 290 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + P + + G L L L+ + + A +E I G Sbjct: 291 FPP------LCQQLVRVGEESGALDVLLDKLADWHQQQTQDLADNLTQMLEPLLMLIIGG 344 Query: 135 SLPFCVSTLVYFTS 148 + V + Sbjct: 345 IVGVLVIAMYLPIF 358 >gi|170681469|ref|YP_001745225.1| general secretion pathway protein GspF [Escherichia coli SMS-3-5] gi|170519187|gb|ACB17365.1| general secretion pathway protein GspF [Escherichia coli SMS-3-5] Length = 407 Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + ML+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDALQASGVYW 229 >gi|134095150|ref|YP_001100225.1| Type IV pilus assembly protein tapC [Herminiimonas arsenicoxydans] Length = 395 Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 19/170 (11%), Positives = 50/170 (29%), Gaps = 6/170 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 + + ++AG+P+ +A + + + F V++ L + Sbjct: 50 KIRSIDVQL--FSRQLYTLLKAGVPIMRGLAGLQESA---INKSFGLVVKDLRESLD-AG 103 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + S F T + ++ G L E L L ++M+ +++ Sbjct: 104 RELSAAMRRHPKVFSPFYTNMVRVGEMTGRLEEVFLRLFDYLEFDRDMRQRIRTALRYPI 163 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + ++ V T + L + + ++ Sbjct: 164 FVVSALTVAMIVINLFVIPTFAKVYAGFKAELPFMTKLLIGTSNFMVQYW 213 Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 9/132 (6%), Positives = 35/132 (26%), Gaps = 5/132 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 S ++G+P+ + V+ + + + + S + Sbjct: 259 LARFARSFALSSKSGVPIVQGLNVVAQTVGNTY-----IASRIEQMRDGVERGESILRTA 313 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + + G L + ++ + + + K + +E + Sbjct: 314 VTTGVFTPVVLQMIAIGEETGELDSLMDEIAAMYEREVDYELKTLSAQIEPILIIGLGIL 373 Query: 136 LPFCVSTLVYFT 147 + + Sbjct: 374 VVVLALGVFLPI 385 >gi|218687980|ref|YP_002396192.1| type IV pilin biogenesis protein [Escherichia coli ED1a] gi|218425544|emb|CAR06327.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli ED1a] Length = 400 Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 22/181 (12%), Positives = 55/181 (30%), Gaps = 22/181 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGVAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLIDKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + G +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANKLLM 235 Query: 180 R 180 R Sbjct: 236 R 236 >gi|293449307|ref|ZP_06663728.1| general secretion pathway protein F [Escherichia coli B088] gi|291322397|gb|EFE61826.1| general secretion pathway protein F [Escherichia coli B088] Length = 407 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + L+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQASGVYW 229 >gi|48898|emb|CAA41804.1| xpsF [Xanthomonas campestris] Length = 390 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 23/183 (12%), Positives = 60/183 (32%), Gaps = 6/183 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ L++K+ + + AG P+ A+++++ D RVI Sbjct: 40 LRMLLRKKPFD-NAALVQFTQQLATLIGAGQPLDRALSILMDLPEDDKSR---RVIADIR 95 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 ++ + + S + + GG++ + L L+ L + +K KV Sbjct: 96 D--TVRAAPLSVALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALKGKVI 153 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + ++G + V L ++ ++ ++ Sbjct: 154 NALIYPAILLAVVGCALLFLLGYVVPQFAQMYESLDVALPWFTQAVLSVGLLVRDWWLVL 213 Query: 181 LMI 183 ++I Sbjct: 214 VVI 216 >gi|330900576|gb|EGH31995.1| type II secretion system protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 231 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + AG P+ ++ +++ Q ++ R+ E G LS ++ Sbjct: 62 AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEE 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 S + + GG L L LS L + ++ +V + ++ Sbjct: 122 GSQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + ++ L+ + P ++ + + G + + + +G + Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGEFL 217 >gi|320195109|gb|EFW69738.1| General secretion pathway protein F [Escherichia coli WV_060327] Length = 407 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + ML+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDALQASGMYW 229 >gi|116751083|ref|YP_847770.1| type II secretion system protein [Syntrophobacter fumaroxidans MPOB] gi|116700147|gb|ABK19335.1| type II secretion system protein [Syntrophobacter fumaroxidans MPOB] Length = 395 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 58/183 (31%), Gaps = 9/183 (4%) Query: 1 MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIET 58 +K + R + + + + AGLPV A+ +I Q++ + + ++E Sbjct: 42 IKPVKSHRQRRVPEEHLIRFFFDLSDLLSAGLPVDRALGLISSNQTNKVFQRISKGLLEE 101 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G LS ++++ S + + G L L L+ L R+ + Sbjct: 102 VQGGSDLSGALAK-----YRHVFGNLSDHMVRAGEASGTLGPILRRLAEYLEQRRTFRQS 156 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN--DPRGHMLLGVAAAFMLIGI 176 + + + + V N L P LL V G Sbjct: 157 LVSSMIYPAILFATSLISMVVLLVYVIPNFAKIFNDLHQKIPPVTQFLLDVGIFLKDYGW 216 Query: 177 MVM 179 ++ Sbjct: 217 ALV 219 Score = 37.4 bits (85), Expect = 0.95, Method: Composition-based stats. Identities = 16/143 (11%), Positives = 44/143 (30%), Gaps = 9/143 (6%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQHLGLSL 65 R + + ++AG+P+ A++ + + ++ ++ + + +G S+ Sbjct: 253 RYLVLHSELTRFCRTLGTMIQAGVPLLRALS-LGQELLTNTVLKQAISPLYQEIKIGHSM 311 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S + + S+ GN+ E L L + + +E Sbjct: 312 SNFFRS------RELFPSRMGTMLRISEEQGNMGEGLLGLGDHFEKELQRRLQRLMTLLE 365 Query: 126 AKASAWIIGSLPFCVSTLVYFTS 148 + V ++ Sbjct: 366 PAVIVVTGLVIGLMVLSMFTAIF 388 >gi|15642422|ref|NP_232055.1| type IV pilin biogenesis protein PilC [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587632|ref|ZP_01677396.1| type IV pilin biogenesis protein PilC [Vibrio cholerae 2740-80] gi|121729936|ref|ZP_01682358.1| type IV pilin biogenesis protein PilC [Vibrio cholerae V52] gi|147673666|ref|YP_001217925.1| type IV pilin biogenesis protein PilC [Vibrio cholerae O395] gi|153818412|ref|ZP_01971079.1| type IV pilin biogenesis protein PilC [Vibrio cholerae NCTC 8457] gi|153827241|ref|ZP_01979908.1| type IV pilin biogenesis protein PilC [Vibrio cholerae MZO-2] gi|227082546|ref|YP_002811097.1| type IV pilin biogenesis protein PilC [Vibrio cholerae M66-2] gi|229507515|ref|ZP_04397020.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae BX 330286] gi|229512289|ref|ZP_04401768.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae B33] gi|229519425|ref|ZP_04408868.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae RC9] gi|229607021|ref|YP_002877669.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae MJ-1236] gi|254849548|ref|ZP_05238898.1| type IV pilin assembly protein pilC [Vibrio cholerae MO10] gi|255746904|ref|ZP_05420849.1| type 4 fimbrial assembly protein PilC [Vibrio cholera CIRS 101] gi|262161553|ref|ZP_06030663.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae INDRE 91/1] gi|262168404|ref|ZP_06036101.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae RC27] gi|262190164|ref|ZP_06048446.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae CT 5369-93] gi|298500217|ref|ZP_07010022.1| type IV pilin biogenesis protein PilC [Vibrio cholerae MAK 757] gi|20178038|sp|Q9X4G9|PILC_VIBCH RecName: Full=Type IV pilin assembly protein pilC; AltName: Full=Type IV-A pilus assembly protein pilC gi|4455003|gb|AAD21031.1| type IV-A pilus assembly protein PilC [Vibrio cholerae] gi|9657000|gb|AAF95568.1| type IV pilin biogenesis protein PilC [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548142|gb|EAX58215.1| type IV pilin biogenesis protein PilC [Vibrio cholerae 2740-80] gi|121628324|gb|EAX60831.1| type IV pilin biogenesis protein PilC [Vibrio cholerae V52] gi|126511045|gb|EAZ73639.1| type IV pilin biogenesis protein PilC [Vibrio cholerae NCTC 8457] gi|146315549|gb|ABQ20088.1| type IV pilin biogenesis protein PilC [Vibrio cholerae O395] gi|149738855|gb|EDM53191.1| type IV pilin biogenesis protein PilC [Vibrio cholerae MZO-2] gi|227010434|gb|ACP06646.1| type IV pilin biogenesis protein PilC [Vibrio cholerae M66-2] gi|227014317|gb|ACP10527.1| type IV pilin biogenesis protein PilC [Vibrio cholerae O395] gi|229344114|gb|EEO09089.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae RC9] gi|229352254|gb|EEO17195.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae B33] gi|229355020|gb|EEO19941.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae BX 330286] gi|229369676|gb|ACQ60099.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae MJ-1236] gi|254845253|gb|EET23667.1| type IV pilin assembly protein pilC [Vibrio cholerae MO10] gi|255735306|gb|EET90706.1| type 4 fimbrial assembly protein PilC [Vibrio cholera CIRS 101] gi|262023296|gb|EEY42000.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae RC27] gi|262028864|gb|EEY47518.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae INDRE 91/1] gi|262033955|gb|EEY52413.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae CT 5369-93] gi|297540910|gb|EFH76964.1| type IV pilin biogenesis protein PilC [Vibrio cholerae MAK 757] Length = 408 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 49/149 (32%), Gaps = 6/149 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 D + + G+P+ A+ ++ ++S ++ ++ G LS+++ Sbjct: 67 SKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRT 126 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + ++ GNL E L+ + ++AKV + Sbjct: 127 ASAH-----FDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVL 181 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 + + + + T+V + Sbjct: 182 VALGVSYLMLTMVIPEFESMFKGFGAELP 210 Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 13/131 (9%), Positives = 36/131 (27%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + S AG+P+ ++ S + V G+ + ++ Sbjct: 277 FSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAAGMPMYIAMRN------ 330 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + + G L + L ++ I + +E ++ + Sbjct: 331 TEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVG 390 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 391 GLVVAMYLPIF 401 >gi|332994889|gb|AEF04944.1| type II secretion system protein [Alteromonas sp. SN2] Length = 408 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 21/186 (11%), Positives = 53/186 (28%), Gaps = 16/186 (8%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 DD + +AG+P+ AV+ + + S ++ + Sbjct: 67 DDLVIFCRQMFSLTKAGIPLLKAVSGLAESCN----SIRLKLALEDAIVSLERGRTLSSG 122 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + I + G L +A A L+ L + + +++A + + Sbjct: 123 LNQHPKIFNQLFVSIIHVGENTGQLEDAFAQLAVYLEREQETRKQIKAATRYPIFVLIAL 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM------------VMRL 181 ++ V + + + + L+ ++R Sbjct: 183 AGAFVVLNIFVIPKFADMFSKFNAELPLMTRALIGTSDFLLNYWYLLIAGGIFIAYMIRR 242 Query: 182 MINFDV 187 +N V Sbjct: 243 SLNTKV 248 Score = 35.5 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 11/132 (8%), Positives = 32/132 (24%), Gaps = 5/132 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +RAG+P++ A+ + + + + + + + Sbjct: 272 LSRYCRSFSMMLRAGVPLTSALNLTSEAVGNVYMG-QKIIAMRERIEKGEGLARVSAASG 330 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + G + E L S + K +E + Sbjct: 331 LFTP----LVMQMIRVGEETGRVDELLVEASEFYEREVDYDLKNLTAKIEPFLIVVVAAM 386 Query: 136 LPFCVSTLVYFT 147 + + Sbjct: 387 VLVLALGIFTPM 398 >gi|304390831|ref|ZP_07372783.1| type II secretion system protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304325714|gb|EFL92960.1| type II secretion system protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 303 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/146 (12%), Positives = 52/146 (35%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R + + P+ ++++ +V AG P+ A+ + + + E +++ Sbjct: 150 LTGAARRRQLRLNQELPDVIELLALAVGAGEPLYGALHRVSARCAGVAGQELEKILAAAD 209 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ S++ + ++ I + G L+ L + R + + Sbjct: 210 NGDSLAPSLTAARARNDSEILAHLIDAIVSALERGSPLAGVLRSQVADSRAVARTQLLTE 269 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146 E ++ + + Sbjct: 270 GGKKEVLMMVPVVFLILPLTVVFALY 295 >gi|218706588|ref|YP_002414107.1| General secretion pathway protein F [Escherichia coli UMN026] gi|293406577|ref|ZP_06650503.1| hypothetical protein ECGG_01883 [Escherichia coli FVEC1412] gi|298382319|ref|ZP_06991916.1| hypothetical protein ECFG_02075 [Escherichia coli FVEC1302] gi|300900294|ref|ZP_07118473.1| general secretion pathway protein F [Escherichia coli MS 198-1] gi|331664574|ref|ZP_08365480.1| general secretion pathway protein F [Escherichia coli TA143] gi|218433685|emb|CAR14600.1| General secretion pathway protein F [Escherichia coli UMN026] gi|291426583|gb|EFE99615.1| hypothetical protein ECGG_01883 [Escherichia coli FVEC1412] gi|298277459|gb|EFI18975.1| hypothetical protein ECFG_02075 [Escherichia coli FVEC1302] gi|300356184|gb|EFJ72054.1| general secretion pathway protein F [Escherichia coli MS 198-1] gi|331058505|gb|EGI30486.1| general secretion pathway protein F [Escherichia coli TA143] Length = 407 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + ML+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDALQASGVYW 229 >gi|238796992|ref|ZP_04640496.1| Type II secretion system protein [Yersinia mollaretii ATCC 43969] gi|238719252|gb|EEQ11064.1| Type II secretion system protein [Yersinia mollaretii ATCC 43969] Length = 267 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 54/140 (38%), Gaps = 2/140 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH--LGLSL 65 RT L P +DI V++G+ + ++++ + +++ L Sbjct: 114 RTESILKSLPFFIDITAACVQSGMTIDNSLSYSAKKFKLINADISFIMLKMTKRGEINGL 173 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +I + + +E+ F + + G + + L LS+ +R+ + + + + + Sbjct: 174 ESAIKELHQCTTAKEIRMFCSALQYSISFGSTVYDQLTKLSQDIREMQLLVTEERISKLS 233 Query: 126 AKASAWIIGSLPFCVSTLVY 145 AK + + + LV Sbjct: 234 AKLTIPLFLFILIPFIVLVI 253 >gi|149181786|ref|ZP_01860277.1| hypothetical protein BSG1_01190 [Bacillus sp. SG-1] gi|148850527|gb|EDL64686.1| hypothetical protein BSG1_01190 [Bacillus sp. SG-1] Length = 403 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 49/151 (32%), Gaps = 6/151 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 L ++AG+ V DA ++ Q+ S + V G LS+++++ R Sbjct: 67 FLRQFATLLQAGVTVVDATEILSSQTGSKALSKALDEVQLELKDGNPLSDALAKHRRIFE 126 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+L E L +L+ + K K+ + I ++ Sbjct: 127 P-----MLINMVRAGEASGSLDETLESLATHYEKQHMTKQKIISALAYPAVVGVIAIAVV 181 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168 + V T + + + Sbjct: 182 IFLLVAVVPTFVTMLADFGGELPAITQFVLG 212 >gi|90406758|ref|ZP_01214951.1| general secretion pathway protein F [Psychromonas sp. CNPT3] gi|90312211|gb|EAS40303.1| general secretion pathway protein F [Psychromonas sp. CNPT3] Length = 406 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 24/174 (13%), Positives = 52/174 (29%), Gaps = 6/174 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R D + V A +P+ + + ++ Q E + I + Sbjct: 60 RCKIKTADLALITRQLSTLVAASIPIEECLQAVLEQCE----KENLKTIIASVRSSIIEG 115 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + + G+L + L L+ R+ MK+ +Q + Sbjct: 116 HSLAESLGAFPFVFDHLFCAMVAAGERSGHLDKVLDKLADYAEQRQAMKSTIQQAMIYPL 175 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVM 179 ++ + + T V G + D L+ ++ A G+ +M Sbjct: 176 VLTFVAVGVISILLTSVVPQVVGQFEHMGADLPATTRFLITISDALRAYGLYLM 229 >gi|74316771|ref|YP_314511.1| type II secretory pathway component PulF [Thiobacillus denitrificans ATCC 25259] gi|74056266|gb|AAZ96706.1| type II secretory pathway component PulF [Thiobacillus denitrificans ATCC 25259] Length = 407 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 20/172 (11%), Positives = 52/172 (30%), Gaps = 8/172 (4%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLS 66 R + +RAG+P+ A+A ++ +++ + E+ G LS Sbjct: 63 RIKPIDVQL--FSRQLYTLLRAGVPILRALAGLIESTANLAFARVIASLKESLEAGRDLS 120 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + R S F + + G L E + L + +A+++ Sbjct: 121 TAMRQHPR-----VFSPFYVAMVRVGEATGRLDEIFLRMFEHLEFERETRARIKEALRYP 175 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + ++ V + + + + + + Sbjct: 176 TFVLIAMVVAVAVINVFVIPAFAKVYAGFGAELPLMTRILIETSRLTLAYGW 227 Score = 43.6 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 13/136 (9%), Positives = 44/136 (32%), Gaps = 5/136 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 + S+++G+PV+ A++V+ + + + + + S Sbjct: 268 LRSTLGRFARTLALSMKSGIPVAQALSVVAEVTDNAWIG-----SRVEQMRNGIERGESI 322 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + + G++ E + ++ + + + K + +E A Sbjct: 323 LRTAQHAGVFNAVVLQMIAVGEETGSIDELMQEVAEMYEREVDYEIKTLSARIEPIIIAA 382 Query: 132 IIGSLPFCVSTLVYFT 147 + G + + Sbjct: 383 MGGLVLVLALGVFLPM 398 >gi|317403410|gb|EFV83923.1| type II secretion system protein [Achromobacter xylosoxidans C54] Length = 246 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 1/147 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 ++ + R P LD++ V AGL A+ P+R + Sbjct: 89 LRAQGEARRRGIERGLPFMLDMMTLCVEAGLGAHAALQAAAANGPSGPLRDALAGALAQV 148 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G+ +I M V ++T ++ LG +L L + R ++M+A+ Sbjct: 149 RAGVPRVAAIQAMADRCGSPLVHRWATALAHADALGISLGPLLRAQAAHCRSERHMRAER 208 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146 A+ K +IG + C ++ F Sbjct: 209 LAMQAPVKMLLPLIGCIFPCTFLVLAF 235 >gi|119715778|ref|YP_922743.1| integral membrane protein [Nocardioides sp. JS614] gi|119536439|gb|ABL81056.1| integral membrane protein [Nocardioides sp. JS614] Length = 299 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 69/185 (37%), Gaps = 2/185 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +R + ++ + + + A + A+ VG + +R+ R + + Sbjct: 88 RAGRRQLEKIEALAAWTESLRDTATAAAGLEQAIPATVGAAHALLRAPVRDLAARLDGRV 147 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQAL 122 L E+++R + +S+ ++ L L +L+ R M+ KV+ Sbjct: 148 PLPEALARFADDVDDPAADMVVAALSLNARQRAGGLERILTSLAASSRTELEMRRKVEHE 207 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + A I L + G++ + P G ++L + AA + + MR + Sbjct: 208 RRALRRQAQRIAFAVLGFVALQAVFARGWVEP-YSTPLGQLVLAILAAIFVGSFVRMRSL 266 Query: 183 INFDV 187 N +V Sbjct: 267 SNGEV 271 >gi|306819826|ref|ZP_07453480.1| conserved hypothetical protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552073|gb|EFM40010.1| conserved hypothetical protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 341 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 62/168 (36%), Gaps = 7/168 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65 K+ A + + ++GLP+ +A++V + S ++ + E+ G + Sbjct: 2 KKNALTNSELSLFCYQLSLIFKSGLPLDEAMSVFTDEMSTPTLKKIALSIKESVDNGEPI 61 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ + E + T + + GNL E L+ LS ++ + + KV + Sbjct: 62 YEAVKKH------DEFPKYMTGMMEIAYNTGNLEEELSRLSTYYQEVERLNQKVSNAVVY 115 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 ++ + + V ++ + D + ++ L Sbjct: 116 PVILTGLMLIIITFLVVKVIPMFSEIIDSIGADIPNTTAVLISIGLAL 163 >gi|191169107|ref|ZP_03030868.1| general secretion pathway protein GspF [Escherichia coli B7A] gi|218696671|ref|YP_002404338.1| General secretion pathway protein F [Escherichia coli 55989] gi|300905918|ref|ZP_07123650.1| general secretion pathway protein F [Escherichia coli MS 84-1] gi|301304136|ref|ZP_07210252.1| general secretion pathway protein F [Escherichia coli MS 124-1] gi|307310405|ref|ZP_07590053.1| general secretion pathway protein F [Escherichia coli W] gi|309794066|ref|ZP_07688491.1| general secretion pathway protein F [Escherichia coli MS 145-7] gi|190900859|gb|EDV60647.1| general secretion pathway protein GspF [Escherichia coli B7A] gi|218353403|emb|CAU99453.1| General secretion pathway protein F [Escherichia coli 55989] gi|300402271|gb|EFJ85809.1| general secretion pathway protein F [Escherichia coli MS 84-1] gi|300840549|gb|EFK68309.1| general secretion pathway protein F [Escherichia coli MS 124-1] gi|306909300|gb|EFN39795.1| general secretion pathway protein F [Escherichia coli W] gi|308122473|gb|EFO59735.1| general secretion pathway protein F [Escherichia coli MS 145-7] gi|315062280|gb|ADT76607.1| type II secretion system lipoprotein F [Escherichia coli W] gi|315253341|gb|EFU33309.1| general secretion pathway protein F [Escherichia coli MS 85-1] gi|323377136|gb|ADX49404.1| general secretion pathway protein F [Escherichia coli KO11] gi|324018100|gb|EGB87319.1| general secretion pathway protein F [Escherichia coli MS 117-3] gi|332344917|gb|AEE58251.1| general secretion pathway protein GspF [Escherichia coli UMNK88] Length = 407 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + L+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQASGVYW 229 >gi|157154920|ref|YP_001464422.1| general secretion pathway protein F [Escherichia coli E24377A] gi|193062187|ref|ZP_03043283.1| general secretion pathway protein GspF [Escherichia coli E22] gi|260869722|ref|YP_003236124.1| putative type II secretion protein GspF [Escherichia coli O111:H- str. 11128] gi|300824046|ref|ZP_07104167.1| general secretion pathway protein F [Escherichia coli MS 119-7] gi|331669775|ref|ZP_08370620.1| general secretion pathway protein F [Escherichia coli TA271] gi|18139875|gb|AAL60186.1|AF426313_6 hypothetical type II secretion protein GspF [Escherichia coli] gi|157076950|gb|ABV16658.1| general secretion pathway protein F [Escherichia coli E24377A] gi|192932407|gb|EDV85005.1| general secretion pathway protein GspF [Escherichia coli E22] gi|257766078|dbj|BAI37573.1| putative type II secretion protein GspF [Escherichia coli O111:H- str. 11128] gi|300523436|gb|EFK44505.1| general secretion pathway protein F [Escherichia coli MS 119-7] gi|323178668|gb|EFZ64244.1| general secretion pathway protein F [Escherichia coli 1180] gi|331062688|gb|EGI34602.1| general secretion pathway protein F [Escherichia coli TA271] Length = 407 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + L+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQASGVYW 229 >gi|325569593|ref|ZP_08145640.1| type IV pilus assembly protein [Enterococcus casseliflavus ATCC 12755] gi|325157149|gb|EGC69314.1| type IV pilus assembly protein [Enterococcus casseliflavus ATCC 12755] Length = 403 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 23/187 (12%), Positives = 55/187 (29%), Gaps = 21/187 (11%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVR 74 L + +G+ + DA ++ Q + V + G LSE+ Sbjct: 65 LVAYLRQFSTLIASGITIVDASRMLEEQQKKPNFKRILGEVRDDIDGGRPLSEAYKAHPN 124 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 P+ T + S++ G+L + L +++ ++ + + + Sbjct: 125 AFPV-----LLTSVITVSEMSGSLEKNLTDMADYYEKSAENRSGLVTAMVYPIILILMTF 179 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGH---------------MLLGVAAAFMLIGIMVM 179 + + ++ D +L V ++IG ++ Sbjct: 180 VVGIILLVMIVPMFVEVFESFDTDLPRITVITMAISDFLQTRGWVLAVFIVGIMIGFWLI 239 Query: 180 RLMINFD 186 R D Sbjct: 240 RRNEKID 246 >gi|170681709|ref|YP_001742226.1| type IV pilin biogenesis protein [Escherichia coli SMS-3-5] gi|170519427|gb|ACB17605.1| type IV pilus assembly protein PilC [Escherichia coli SMS-3-5] Length = 400 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 22/181 (12%), Positives = 56/181 (30%), Gaps = 22/181 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAYDLEQGIAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + + G +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKIFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANKLLM 235 Query: 180 R 180 R Sbjct: 236 R 236 >gi|194436718|ref|ZP_03068818.1| general secretion pathway protein GspF [Escherichia coli 101-1] gi|194424200|gb|EDX40187.1| general secretion pathway protein GspF [Escherichia coli 101-1] Length = 407 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + ML+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDALQASGVYW 229 >gi|191171825|ref|ZP_03033371.1| general secretion pathway protein GspF [Escherichia coli F11] gi|300993060|ref|ZP_07180168.1| general secretion pathway protein F [Escherichia coli MS 200-1] gi|190907860|gb|EDV67453.1| general secretion pathway protein GspF [Escherichia coli F11] gi|300305184|gb|EFJ59704.1| general secretion pathway protein F [Escherichia coli MS 200-1] gi|324011872|gb|EGB81091.1| general secretion pathway protein F [Escherichia coli MS 60-1] Length = 407 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + ML+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDALQASGVYW 229 >gi|320181013|gb|EFW55934.1| General secretion pathway protein F [Shigella boydii ATCC 9905] Length = 407 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKTGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + L+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQASGVYW 229 >gi|296120429|ref|YP_003628207.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] gi|296012769|gb|ADG66008.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] Length = 402 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 21/186 (11%), Positives = 61/186 (32%), Gaps = 9/186 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60 + L +R + +RAG+P+ ++ ++ Q+ + ++ V Sbjct: 52 QRLASRRVPP--RMLATLFSQMSDLLRAGVPLLRSIELLERQTKNQALKRVLEDVRSRVA 109 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L++S+ + + I + GG L ++L+ ++ ++ +K+KV Sbjct: 110 DGGRLADSMKEHPNA-----FNKLTVSIVHAGEEGGFLEDSLSRVAVFTEHQEELKSKVV 164 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP-RGHMLLGVAAAFMLIGIMVM 179 A + + + + + + A ++ Sbjct: 165 AAMSYPLVLMVLGTIVVVGMIVFFVPGFEPMFDSMKQTGSLPWATTVLLAISNILQRWWW 224 Query: 180 RLMINF 185 +++ Sbjct: 225 AVLLAI 230 Score = 36.3 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 14/132 (10%), Positives = 38/132 (28%), Gaps = 5/132 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 ++ + G+P+ A+ + + + V S+ + P Sbjct: 272 FCRVLGTLLHNGVPLLQALNIAKDATGNRVLSDAIAKAAENVSSGKTLAQPLAASKQFP- 330 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + NL L ++ + N + + +E + G++ F Sbjct: 331 ----TDVLEMIAVGEEANNLENVLIGVADKMEKATNRQLDLVVRLLEPLMLVVMAGAILF 386 Query: 139 CVSTLVYFTSPG 150 + L+ Sbjct: 387 LLIALMLPIFQS 398 >gi|68537056|ref|YP_251761.1| hypothetical protein jk1961 [Corynebacterium jeikeium K411] gi|68264655|emb|CAI38143.1| putative membrane protein [Corynebacterium jeikeium K411] Length = 374 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 62/179 (34%), Gaps = 2/179 (1%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + + +R K L + + +D I R V AG +AV + + +R E Sbjct: 24 RMMKTRRQMKTLAEVRDVVDAIAREVAAGARPLEAVEHAAEGLNSETLRHELGVACVKVR 83 Query: 61 LGLSLSESISRMVRYMPLQEVSFF-STVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 LG + + + + + G L+ + + +K Sbjct: 84 LGAAPGAGAAGAAPGSDAPSFLAHLFHIWGISRRHGVGLATLARAHVTDIDAQLAHISKS 143 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + A+ + ++ +LP + L + G + L+ + G +L V + G + Sbjct: 144 TSATAGARLTVTVLLALPVGAAALGQSSGLGTLTFLLTNVLGVLLFLVGVGLVCAGTLW 202 >gi|260579400|ref|ZP_05847282.1| membrane protein [Corynebacterium jeikeium ATCC 43734] gi|258602529|gb|EEW15824.1| membrane protein [Corynebacterium jeikeium ATCC 43734] Length = 374 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 58/179 (32%), Gaps = 2/179 (1%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQH 60 + + +R K L + + +D I R V AG +AV + V Sbjct: 24 RMMKTRRQMKTLAEVRDVVDAIAREVAAGARPLEAVEHAAEGLNSETLRHQLDVACVRVR 83 Query: 61 LGLSLSESISRMVRYMPLQEVSFF-STVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 LG + + + + + G L+ + + +K Sbjct: 84 LGAAPGAGAAGAAPGSDAPSFLAHLFHIWGISRRHGVGLATLARAHVTDIDAQLAHISKS 143 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + A+ + ++ +LP L + G + L+ + G +L V + G + Sbjct: 144 TSATAGARLTVTVLLALPVGAVALGQSSGLGTLTFLLTNVLGVLLFLVGVGLVCAGTLW 202 >gi|163814842|ref|ZP_02206230.1| hypothetical protein COPEUT_00992 [Coprococcus eutactus ATCC 27759] gi|158449781|gb|EDP26776.1| hypothetical protein COPEUT_00992 [Coprococcus eutactus ATCC 27759] Length = 434 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/155 (10%), Positives = 53/155 (34%), Gaps = 3/155 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAV-AVIVGQSSDPVRSEFRRVIETQ 59 + K+R + + D+P +D ++ + AG+ + + ++ + E R + Sbjct: 282 LSKQEKERKQQLMIDYPELVDRLILYLGAGVTIRGSFVRMVQNDDESALMKELRYTLNEI 341 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G+ E+ M + + +++S + + ++ + + ++ Sbjct: 342 QAGIPEGEAYYNMGHRINIPVYMKLMSMLSQNV--SKGTKDIMIMMAGEEQAALQTRKEL 399 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 E + + + +V P M+ Sbjct: 400 ARKKGEEAGTRLLFPMIVLLGVVMVIVVLPAVMSF 434 >gi|227114131|ref|ZP_03827787.1| general secretion pathway protein F [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 408 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 54/169 (31%), Gaps = 9/169 (5%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLS 64 +++ D + V A LP+ +A+ + QS + V G S Sbjct: 60 RRKIRISTSDLALLTRQLATLVAASLPLEEALDAVAKQSEKPQLSQLMAAVRSKVMEGHS 119 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L++++ + + G+L L L+ R+ M++++Q + Sbjct: 120 LADAMKCFP-----SSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMI 174 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + VS L+ P + I+ + L M Sbjct: 175 YP---CVLTVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMS 220 >gi|197262922|ref|ZP_03162996.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197241177|gb|EDY23797.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 400 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 58/173 (33%), Gaps = 10/173 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + +L G L+E L+R + ++ + V+ Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPA---I 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183 I+ + V +++F P + + + LL + G L++ Sbjct: 169 ILTMVALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGWLIL 221 >gi|89093855|ref|ZP_01166801.1| general secretion pathway protein F [Oceanospirillum sp. MED92] gi|89081985|gb|EAR61211.1| general secretion pathway protein F [Oceanospirillum sp. MED92] Length = 407 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 19/165 (11%), Positives = 54/165 (32%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRM 72 D+ + +AG+P++ A+ + +P+ E + G LS ++++ Sbjct: 68 DELIMFSRQMYSLTKAGVPITRAMRGLANTVQNPLLVETLSDLANDLEKGHELSSALAKH 127 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + S + + G L +A ++ L + +V+ + Sbjct: 128 PK-----VFSELYVSMIHVGENTGQLDDAFRQMASYLELERQTVKQVKQATRYPMFVMIA 182 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 I + ++ +V + + V+ + ++ Sbjct: 183 IAAAITLINIVVIPQFKNIFVSFGGEMPLPTKILVSISDFMVNWW 227 Score = 38.6 bits (88), Expect = 0.37, Method: Composition-based stats. Identities = 14/154 (9%), Positives = 37/154 (24%), Gaps = 13/154 (8%) Query: 2 KHLIKKRTAKF--------LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR 53 + + +R KF ++AG+P+ +A++ + Sbjct: 251 RMVWDRRKLKFPIIGPIIYRTILARFSRTFSIVLKAGVPIEQGLAIVANAVGNKHIGTKV 310 Query: 54 RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 + + S + S + + G + + L + Sbjct: 311 ASMRQ-----GIERGESFTQTAHQTEMFSPLVMQMLAVGEETGRVDQMLEEAAGFYEQEV 365 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 K ++E I + + Sbjct: 366 EYDLKNLTSAIEPILIVAIGIMVLILALGVFLPL 399 >gi|323946661|gb|EGB42683.1| general secretion pathway protein F [Escherichia coli H120] Length = 407 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + L+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQASGVYW 229 >gi|186477404|ref|YP_001858874.1| type II secretion system protein [Burkholderia phymatum STM815] gi|184193863|gb|ACC71828.1| type II secretion system protein [Burkholderia phymatum STM815] Length = 407 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 51/160 (31%), Gaps = 10/160 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-----VRSEFRRVIETQHLGLSLSESISRMV 73 + +RAGLP++ A+ ++ S + R + G+S S +++R Sbjct: 69 FTRQLSGLLRAGLPLASALELLAQASKHNARTKGMPRIVRALARDITAGVSFSSALARHP 128 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G L LA L+ +AKV+A A + Sbjct: 129 AQ-----FNALYCQLVEVGEASGTLPAVLARLADDRERAAAQRAKVRAALTYPVAVLLLA 183 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 S+ + V T + +A + Sbjct: 184 LSITTALLVWVVPTFKQIFDGFGAKLPAPTQFVLAMSAAA 223 >gi|86360424|ref|YP_472312.1| putative pilus assembly protein [Rhizobium etli CFN 42] gi|86284526|gb|ABC93585.1| putative pilus assembly protein [Rhizobium etli CFN 42] Length = 300 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 66/153 (43%), Gaps = 4/153 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLG 62 ++ R + +FP LD++V + +A + +++ + + V E + ++ LG Sbjct: 146 KMQDRKERISREFPYFLDLVVMTQQAQATLPESLRLYAEAAPGTVMSEEIEQTLKDVALG 205 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + E++ R+ M +EV + G N E L +R LR R + + Sbjct: 206 TGMIEALQRLEARMTAEEVVRVIRAVIQGEVEGSNRVELLREHARDLRFR---RWEKADR 262 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + E + ++ ++ VS L+ +P + ++ Sbjct: 263 ASEKLKAKIVMPAMMIVVSILLLVLAPAIVEMM 295 >gi|28198639|ref|NP_778953.1| general secretory pathway protein F [Xylella fastidiosa Temecula1] gi|182681323|ref|YP_001829483.1| type II secretion system protein [Xylella fastidiosa M23] gi|28056723|gb|AAO28602.1| general secretory pathway protein F [Xylella fastidiosa Temecula1] gi|182631433|gb|ACB92209.1| type II secretion system protein [Xylella fastidiosa M23] gi|307579773|gb|ADN63742.1| general secretion pathway protein F [Xylella fastidiosa subsp. fastidiosa GB514] Length = 405 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 57/171 (33%), Gaps = 7/171 (4%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVR 74 + + + AG P+ A++++ + R V + G LS ++ R Sbjct: 68 LIHFTQQLAALLGAGQPLDRALSILTDLPDNEKSRRIIGDVCDIVRGGTPLSIALER--- 124 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 S ++ + GGN+ E L L+ L + ++AKV + +++G Sbjct: 125 --QHGVFSRLYVTMARAGESGGNMPETLQRLADYLERNQVVRAKVINALIYPVILIFVVG 182 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + V L + GV A IG L+ Sbjct: 183 GALAFLLGYVVPQFGAMYESL-DVALPWFTQGVLALGHFIGDWWFLLLAVI 232 >gi|227875850|ref|ZP_03993976.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243] gi|269977485|ref|ZP_06184457.1| type II secretion system protein [Mobiluncus mulieris 28-1] gi|306819131|ref|ZP_07452845.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] gi|307700029|ref|ZP_07637078.1| type II secretion system F domain protein [Mobiluncus mulieris FB024-16] gi|227843598|gb|EEJ53781.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243] gi|269934401|gb|EEZ90963.1| type II secretion system protein [Mobiluncus mulieris 28-1] gi|304648107|gb|EFM45418.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] gi|307614790|gb|EFN94010.1| type II secretion system F domain protein [Mobiluncus mulieris FB024-16] Length = 297 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 21/142 (14%), Positives = 51/142 (35%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 K+R + + P+A++++ +V AG + A+ + + + E R++ G + Sbjct: 144 AKQRQMQLNQELPDAIELLALAVGAGESLYMALERVASRCTQVTGEELTRLMAELKQGEA 203 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 LS S++ + +S + + G L++ L R + Q Sbjct: 204 LSMSLTSWRTRTESEVLSHLVDAVVSALERGSPLAQVLREQVADSRSAARNQLLAQGGKK 263 Query: 125 EAKASAWIIGSLPFCVSTLVYF 146 E ++ + + Sbjct: 264 EVWMMIPVVFLILPLTVVFALY 285 >gi|170780637|ref|YP_001708969.1| putative integral membrane protein [Clavibacter michiganensis subsp. sepedonicus] gi|169155205|emb|CAQ00306.1| putative integral membrane protein [Clavibacter michiganensis subsp. sepedonicus] Length = 333 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 61/183 (33%), Gaps = 11/183 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQHLGLSLSESI 69 ++ + + + AGL + A + + G++ R+ V S + Sbjct: 24 TEEIATFVRRLAVLLGAGLHLERAWSQLAPPGGRARRGERAVPALVRRVASGAGSAPLAE 83 Query: 70 SRMVRYMPLQ--------EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + ++ + + V + G L+ +L L+ L D ++ Sbjct: 84 RVVAAATAVEPAGGATAGSWCALAAGLEVADRTGAPLARSLDRLAVSLVDIARVRRDAGT 143 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 A++ + +P L + VL+ G LGV ++ + IG R Sbjct: 144 ALAGPVATSRTVLLMPGAGLLLAAGLGFDPLRVLVTTLPGLACLGVGSSLVAIGWRWNRD 203 Query: 182 MIN 184 ++ Sbjct: 204 LVR 206 >gi|71908835|ref|YP_286422.1| type II secretion system protein [Dechloromonas aromatica RCB] gi|71848456|gb|AAZ47952.1| type II secretion system protein [Dechloromonas aromatica RCB] Length = 394 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 55/173 (31%), Gaps = 8/173 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQH 60 + K R+ KF P ++ + AGL V + + + Q SE ++ Sbjct: 46 QKRGKSRSGKF--QLPLFTRQLLSLLEAGLNVVEGLETLAEQDQGSGSSEVLNGLLTALR 103 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SLS ++ R P S+ G++ E+L + +K K+ Sbjct: 104 QGQSLSTALQRFPEVFP-----ELYVATVKASERTGDMPESLRRYLTFDEKLRELKKKLV 158 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + ++ + + F + V P G L + Sbjct: 159 SAAIYPLLLLAVGLLVTFFLLGFVVPRFALVFADSGRQPEGLSSLLFIWGDFV 211 >gi|71274718|ref|ZP_00651006.1| type II secretion system protein [Xylella fastidiosa Dixon] gi|71899601|ref|ZP_00681756.1| type II secretion system protein [Xylella fastidiosa Ann-1] gi|71164450|gb|EAO14164.1| type II secretion system protein [Xylella fastidiosa Dixon] gi|71730643|gb|EAO32719.1| type II secretion system protein [Xylella fastidiosa Ann-1] Length = 405 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 58/173 (33%), Gaps = 7/173 (4%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVR 74 + + + AG P+ A++++ + R V + G LS ++ R Sbjct: 68 LIHFTQQLAALLGAGQPLDRALSILTDLPDNEKSRRIIGDVCDIVRGGTPLSIALER--- 124 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 S ++ + GGN+ E L L+ L + ++AKV + +++G Sbjct: 125 --QHGVFSRLYVTMARAGESGGNMPETLQRLADYLERNQVVRAKVINALIYPVILIFVVG 182 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + V L + GV A IG L+ + Sbjct: 183 GALAFLLGYVVPQFGAMYESL-DVALPWFTQGVLALGHFIGDWWFLLLAVIGI 234 >gi|254449003|ref|ZP_05062457.1| type II secretion system protein [gamma proteobacterium HTCC5015] gi|198261397|gb|EDY85688.1| type II secretion system protein [gamma proteobacterium HTCC5015] Length = 408 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/171 (10%), Positives = 52/171 (30%), Gaps = 7/171 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + + +G+P+ A ++ + ++ + G + +++++ Sbjct: 68 DIAVFARQMATMMSSGVPLVQAFEIVGSSADNPRMKKLIYDIKNDVEGGANFADALAAHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G L L ++ + +K K++ A + Sbjct: 128 DH-----FDSLFVNLVASGEASGTLETLLDKVATYKEKSEAIKKKIKKAMTYPIAVMVMA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA-FMLIGIMVMRLMI 183 + + V D L V A+ +M I ++ + Sbjct: 183 AVVTVILMVFVVPQFESIFQGFGADLPAFTQLVVDASRWMRSNIFILIAIT 233 Score = 39.3 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 38/130 (29%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ +A+ I G ++ V + I + + R P Sbjct: 276 FARTLATMFAAGVPLVEAMNSISGAVNNHVYEQAIYQIRDEISSGDPLTASMRRTNLFPN 335 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G++ L ++ + + + ME A + + Sbjct: 336 -----MMLAMVQIGEESGSIDSMLLKVADFYEEEVDNTVDNLSSLMEPMIMAVLGVLVGG 390 Query: 139 CVSTLVYFTS 148 V + Sbjct: 391 LVIAMYLPIF 400 >gi|168464305|ref|ZP_02698208.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195632934|gb|EDX51388.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 400 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + +L G L+E L+R + ++ + V+ Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPA---I 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183 I+ V +++F P + + + LL + G L++ Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGAAWGWLIL 221 >gi|77919741|ref|YP_357556.1| putative general protein secretion protein [Pelobacter carbinolicus DSM 2380] gi|77545824|gb|ABA89386.1| putative general protein secretion protein [Pelobacter carbinolicus DSM 2380] Length = 405 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 25/174 (14%), Positives = 58/174 (33%), Gaps = 12/174 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 D + AGL + + ++ Q + ++ V E G + ++++S+ Sbjct: 64 TKDLVVFTRQFATMIDAGLALVQCLDILGRQQENQVLKKVLVEVKEGVESGSTFADALSK 123 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + ++GG L L L+ L +K KV+ Sbjct: 124 HPKI-----FDELFVNLVAAGEVGGILDTILNRLAAYLEKAHKLKKKVKGAMTYPAT--- 175 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM--VMRLMI 183 ++G + ++ F P + + D G + L + + + +I Sbjct: 176 VVGIAVIVIGVILVFVIPAF-EKMFADFGGVLPLPTRIVIAISNFIQSWIFAII 228 Score = 34.7 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 12/130 (9%), Positives = 37/130 (28%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+P+ D + ++ + + + S+SE + Sbjct: 273 FSRTLGTMISSGVPILDGLDIVAKTAGNKTVE-----NAVYKVRQSISEGKTIAEPLEKT 327 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G++ L ++ D + ME ++ ++ Sbjct: 328 GVFPPMVCQMIGVGEQSGSIDGMLNKIADFYDDEVDEAVGNLTAMMEPMLMLFLGTTVGG 387 Query: 139 CVSTLVYFTS 148 V + Sbjct: 388 LVIAMYLPIF 397 >gi|148979562|ref|ZP_01815593.1| type IV pilin biogenesis protein PilC [Vibrionales bacterium SWAT-3] gi|145961746|gb|EDK27042.1| type IV pilin biogenesis protein PilC [Vibrionales bacterium SWAT-3] Length = 409 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 57/161 (35%), Gaps = 12/161 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + H +K R D + + G+P+ A+ ++ ++S + + Sbjct: 62 LTHRVKSR------DITVLTRQLATMLATGVPIVQAIKLVSDNHRKAEMKSILSHICKGV 115 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G +S+++ R+ T + +L GNL++ L+ + +K+KV Sbjct: 116 EAGTPISKAMRTASRH-----FDDLYTDLVATGELSGNLAQVFERLATYREKSEQLKSKV 170 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 + + ++ + + T+V + D Sbjct: 171 IKALIYPAMVVTVALTVSYLMLTMVIPEFESMFSGFGADLP 211 >gi|531742|emb|CAA56981.1| xcpS [Pseudomonas putida] Length = 400 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 50/171 (29%), Gaps = 7/171 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + + AG+P+ DA+A + Q P V L L Sbjct: 53 RHQRLSRAQLCELTRQLATLTGAGIPLVDALATLERQLRQPALH-SVLVALRGSLAEGLG 111 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + S + + G L++ L L+ L + + K + + Sbjct: 112 LAR---SLARQGASFSGLYCALVEAGERSGRLAQVLTRLADHLEQVQRQQHKARTALIYP 168 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++G V L+ F P + + L+ + G++ Sbjct: 169 ---CVLMGVSLAVVIGLMTFVVPKLTEQFAHAGQSLPLITALLIGLSQGLV 216 Score = 39.7 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 15/128 (11%), Positives = 38/128 (29%), Gaps = 7/128 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + +G+ + +A+ V S+ +V + G SL ++ Q Sbjct: 270 RSLAILSSSGVALLEALQVATETVSNRRIRLAMEQVRQQVQGGTSLHRALDA------CQ 323 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + + G L++ L ++ + E + + F Sbjct: 324 QFPPLLVNMVGSGEASGTLADMLERVADDQERGFARQVDTAMALFEPLMILVMGAVVLFI 383 Query: 140 VSTLVYFT 147 V ++ Sbjct: 384 VLAVLLPI 391 >gi|332981711|ref|YP_004463152.1| Type II secretion system F domain-containing protein [Mahella australiensis 50-1 BON] gi|332699389|gb|AEE96330.1| Type II secretion system F domain protein [Mahella australiensis 50-1 BON] Length = 405 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 22/158 (13%), Positives = 58/158 (36%), Gaps = 9/158 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 D ++AG+P+ A+ ++ Q ++ ++ + ++ +G +LS+S+ Sbjct: 63 RDISVFCRQFSAVIKAGIPIVQALDIMREQVANKSLKEALAEIYQSVQVGKALSDSMEEY 122 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R P + +L G L +L ++ + ++ KV + + Sbjct: 123 PRVFP-----AMLVEMVRVGELSGTLDISLERMADTYEKQYKLQQKVSNAMIYPVVVCAV 177 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + V ++ F P ++++ + L Sbjct: 178 AIA---VVIFMLIFVVPTFVSMFTDSGMELPLPTRILL 212 Score = 34.7 bits (78), Expect = 6.4, Method: Composition-based stats. Identities = 14/132 (10%), Positives = 41/132 (31%), Gaps = 5/132 (3%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 N I+ + +G+ ++ A+ ++ G + V + + ++ Sbjct: 269 ANFAQILSTLLASGIDINQALDIVKGVIKNKVVEGHID-----EFIEDVEQGVTLADTIG 323 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + ++ + G+L LA ++ A +E + ++ Sbjct: 324 KAELFPVMLVQMTRIGEESGSLDAMLAQTAQFYETEAENAATRLTSLIEPAIIVVLGLAI 383 Query: 137 PFCVSTLVYFTS 148 F V ++ Sbjct: 384 GFIVISIALPMF 395 >gi|254162914|ref|YP_003046022.1| type II secretion protein GspF [Escherichia coli B str. REL606] gi|297520543|ref|ZP_06938929.1| hypothetical type II secretion protein GspF [Escherichia coli OP50] gi|242378518|emb|CAQ33303.1| pulF [Escherichia coli BL21(DE3)] gi|253974815|gb|ACT40486.1| hypothetical type II secretion protein GspF [Escherichia coli B str. REL606] gi|253978970|gb|ACT44640.1| hypothetical type II secretion protein GspF [Escherichia coli BL21(DE3)] Length = 407 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + L+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQASGVYW 229 >gi|291615062|ref|YP_003525219.1| type II secretion system F domain protein [Sideroxydans lithotrophicus ES-1] gi|291585174|gb|ADE12832.1| Type II secretion system F domain protein [Sideroxydans lithotrophicus ES-1] Length = 413 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 6/164 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMV 73 + + ++AG+P+ A+A + S +PV S + + E+ G LS ++ R Sbjct: 73 ELMLFSRQMYTLLKAGVPIMRALAGLQESSRNPVFSAMLQDLRESLDSGRELSTALRRHP 132 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + S F + ++ G L L L K+MK ++++ + Sbjct: 133 KI-----FSPFYLSMVQVGEMTGMLDVTFLRLYEHLEFEKDMKERIKSAVRYPMFVLVAM 187 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 V+ V + + + ++ Sbjct: 188 AVAIVIVNIFVIPAFAKVFEGFHAQLPLMTRILMGFSGFMVHYW 231 >gi|289428857|ref|ZP_06430537.1| conserved hypothetical protein [Propionibacterium acnes J165] gi|289157858|gb|EFD06081.1| conserved hypothetical protein [Propionibacterium acnes J165] gi|313806748|gb|EFS45253.1| conserved hypothetical protein [Propionibacterium acnes HL087PA2] gi|313817517|gb|EFS55231.1| conserved hypothetical protein [Propionibacterium acnes HL046PA2] gi|313822021|gb|EFS59735.1| conserved hypothetical protein [Propionibacterium acnes HL036PA1] gi|313824429|gb|EFS62143.1| conserved hypothetical protein [Propionibacterium acnes HL036PA2] gi|313826450|gb|EFS64164.1| conserved hypothetical protein [Propionibacterium acnes HL063PA1] gi|314926543|gb|EFS90374.1| conserved hypothetical protein [Propionibacterium acnes HL036PA3] gi|314961392|gb|EFT05493.1| conserved hypothetical protein [Propionibacterium acnes HL002PA2] gi|314980265|gb|EFT24359.1| conserved hypothetical protein [Propionibacterium acnes HL072PA2] gi|314987404|gb|EFT31495.1| conserved hypothetical protein [Propionibacterium acnes HL005PA2] gi|314989055|gb|EFT33146.1| conserved hypothetical protein [Propionibacterium acnes HL005PA3] gi|315082690|gb|EFT54666.1| conserved hypothetical protein [Propionibacterium acnes HL027PA2] gi|315086397|gb|EFT58373.1| conserved hypothetical protein [Propionibacterium acnes HL002PA3] gi|315087884|gb|EFT59860.1| conserved hypothetical protein [Propionibacterium acnes HL072PA1] gi|327333934|gb|EGE75651.1| hypothetical protein HMPREF9337_00443 [Propionibacterium acnes HL096PA3] gi|327445235|gb|EGE91889.1| hypothetical protein HMPREF9568_01461 [Propionibacterium acnes HL013PA2] gi|332674640|gb|AEE71456.1| hypothetical protein PAZ_c02530 [Propionibacterium acnes 266] Length = 256 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 60/171 (35%), Gaps = 5/171 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + A + V G S A+ + + Q +G S+S+++ Sbjct: 83 REVARATRALAGRVSVGEIPSVALEHVADDVE-----VLAQARRAQAVGGSVSDALIATS 137 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + + + + G L+ A +++ R ++A + + A+AS I+ Sbjct: 138 RQPGMAGLVPLAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIM 197 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 G LP + + M L G L + +G++ + + Sbjct: 198 GLLPLVGLLMGHVVGAHPMVFLTTTWLGRACLLGSTLLACVGVLWSESLAD 248 >gi|261211521|ref|ZP_05925809.1| type 4 fimbrial assembly protein PilC [Vibrio sp. RC341] gi|260839476|gb|EEX66102.1| type 4 fimbrial assembly protein PilC [Vibrio sp. RC341] Length = 408 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 47/149 (31%), Gaps = 6/149 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 D + + G+P+ A+ ++ ++S ++ + G LS+++ Sbjct: 67 TKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKGVEAGTPLSKAMRT 126 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + ++ GNL E L+ + ++AKV + Sbjct: 127 AS-----PHFDALYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVL 181 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 + + + + T+V + Sbjct: 182 VALGVSYLMLTMVIPEFESMFKGFGAELP 210 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 13/131 (9%), Positives = 36/131 (27%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + S AG+P+ ++ S + V G+ + ++ Sbjct: 277 FSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVHRDTAAGMPMYIAMRN------ 330 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + + G L + L ++ I + +E ++ + Sbjct: 331 TEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGIVVG 390 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 391 GLVVAMYLPIF 401 >gi|254230334|ref|ZP_04923721.1| type IV pilus assembly protein TapC [Vibrio sp. Ex25] gi|262393317|ref|YP_003285171.1| type 4 fimbrial assembly protein PilC [Vibrio sp. Ex25] gi|151937158|gb|EDN56029.1| type IV pilus assembly protein TapC [Vibrio sp. Ex25] gi|262336911|gb|ACY50706.1| type 4 fimbrial assembly protein PilC [Vibrio sp. Ex25] Length = 407 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 50/161 (31%), Gaps = 12/161 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + H +K R D I + G+P+ A+ ++ ++S V Sbjct: 60 LSHRVKGR------DITVFTRQISTMLITGVPLVQALKLVSENHKKAEMKSILMSVTRAV 113 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G +S+++ + + + GNL+E L+ + ++AKV Sbjct: 114 EAGTPMSKAMRTASEHFDPLYTD-----LIATGEQSGNLAEVFERLATYREKNEQLRAKV 168 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 + + + F + T V D Sbjct: 169 IKALIYPAMVVLVALGVSFIMLTKVIPEFEKMFVGFGADLP 209 Score = 35.1 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 13/136 (9%), Positives = 37/136 (27%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72 + S AG+P+ ++ S + V G+ + ++ Sbjct: 271 AAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNLHYQLAIEEVYRDTAAGMPMYVAMRN- 329 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G L + L ++ I + + +E ++ Sbjct: 330 -----CNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFL 384 Query: 133 IGSLPFCVSTLVYFTS 148 + V+ + Sbjct: 385 GIVVGGLVTAMYLPIF 400 >gi|331674520|ref|ZP_08375280.1| general secretion pathway protein F [Escherichia coli TA280] gi|331068614|gb|EGI40009.1| general secretion pathway protein F [Escherichia coli TA280] Length = 407 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + L+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQANGVYW 229 >gi|11498600|ref|NP_069828.1| hypothetical protein AF0995 [Archaeoglobus fulgidus DSM 4304] gi|2649600|gb|AAB90246.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 651 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 60/184 (32%), Gaps = 7/184 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQH-L 61 I R +K P+A+ + + G+ + + + + V E R++ L Sbjct: 130 ISDRKSKINRILPHAIIFMYSLSKGGMSLVQILKALADNHEVYGEVSKEASRILWEVEGL 189 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L +++ V P F + GG+++ + +R K Sbjct: 190 GKDLRTALAEAVDTTPSDNFKEFLHGLITIIDSGGDITRYFEERAEFYFERARQDQKSFL 249 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + A +I + + ++ + ++ + + + IG + + Sbjct: 250 EFLGLMAETYITAFVAGPLFLIII----QTVMSVMGQTNEVAMFSIIYFVIPIGSFMFAM 305 Query: 182 MINF 185 +I Sbjct: 306 LIKL 309 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 67/157 (42%), Gaps = 3/157 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L ++ ++ P L + + +G+P+ A+ +I + P+R E ++ G+ Sbjct: 424 LGRRGVKTYMRLTPIFLSKLASANESGMPIYRAITMIAKTDTSPLRKEIAKIKADLDWGI 483 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 SLS+++ R + + E+S T+++ + GN++E L ++ + ++ + Sbjct: 484 SLSDALVRFANRLKIFEISRTMTLLNEALKSTGNVTEVLMISAKDATSAELLRRERMTNM 543 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 I+ F +VY S +++ L Sbjct: 544 ---FMYVIIVYIAFFVFIGIVYIISSTFLSTLAESAA 577 >gi|148272482|ref|YP_001222043.1| putative pilus assembly protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830412|emb|CAN01347.1| conserved membrane protein, putative pilus assembly protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 316 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 55/140 (39%), Gaps = 2/140 (1%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + P L+ + S+ AG + DA+ + S + E RV+ G+ ++ + + Sbjct: 173 QAELPTVLEFLALSLAAGEGLLDALRRVARVGSGELAMELGRVVADVGTGIPVTRAFDDL 232 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R + + VS ++ + G L+E L ++ R+ K ++ + + + Sbjct: 233 ARRLAMPAVSRLVDQLAGSLERGTPLAEVLRAQAQDAREVA--KRELLESAGRKEVGMLV 290 Query: 133 IGSLPFCVSTLVYFTSPGYM 152 T+V+ PG Sbjct: 291 PLVFLILPLTIVFALFPGIF 310 >gi|152983555|ref|YP_001350203.1| hypothetical protein PSPA7_4867 [Pseudomonas aeruginosa PA7] gi|150958713|gb|ABR80738.1| hypothetical protein PSPA7_4867 [Pseudomonas aeruginosa PA7] Length = 303 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 60/147 (40%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 +KH K R A ++ + +I AGL V A+ V+ + + E + Sbjct: 141 LKHFAKARRALIAEEMILFVQLIRILFDAGLTVEQALRVVCQEGRGITPQLARELDLALA 200 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ L+E + + R + + ++ V+ + GG+ L L ++ DR+ Sbjct: 201 RAGNGIDLAEELEALARRLQVDPLNDCCGVLRQMLRQGGSARGTLLTLKQLFEDRRLTTL 260 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + + + AK S ++ L + ++ Sbjct: 261 QERIGKLSAKMSLVMMVLLFPALLIVL 287 >gi|223040652|ref|ZP_03610922.1| type II secretion system protein [Campylobacter rectus RM3267] gi|222878110|gb|EEF13221.1| type II secretion system protein [Campylobacter rectus RM3267] Length = 416 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 62/160 (38%), Gaps = 9/160 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 ++ A + AG+ + D++ + + D +++ F + + + G SL+++I++ Sbjct: 73 NNLIAAFRQLSVMTNAGISIHDSIKEVSKSTEDKRLKAIFATLNDDLNQGQSLTDAITKF 132 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 E+ + + GN+SE+L LS IL + + K + + Sbjct: 133 -----KGELGDVVIAMVKLGESTGNMSESLHKLSEILHEVWENQRKFKKAMRYPI---IV 184 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 + ++ L+ F P + + + V + Sbjct: 185 MSAMAIAFVILMIFVVPQFREIFEQLGANLPVPTVILLSI 224 >gi|187251609|ref|YP_001876091.1| TadC subunit [Elusimicrobium minutum Pei191] gi|186971769|gb|ACC98754.1| TadC subunit [Elusimicrobium minutum Pei191] Length = 296 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 2/148 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIET 58 + I+KR L +F +D+ + +GL A I+ + + + E +++ Sbjct: 135 VNSKIQKRQRDMLGNFSTTVDLAALIIESGLDYMTAFDRIIRIAKEKTVLEEELDKMLNE 194 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 LG S E++ R+ +QE+ F +I +LG +L + L N S LR R+ KA+ Sbjct: 195 VKLGYSRREALERLANRTGVQEIRSFVGLIIQSDELGTSLVDLLRNFSIDLRFRRMNKAE 254 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYF 146 A K + + V L+ Sbjct: 255 KLAAQASTKMLVPLFLFIFPTVFILILA 282 >gi|456044|gb|AAC36925.1| homologous to PilC of Pseudomonas aeruginosa [Escherichia coli] Length = 380 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 21/182 (11%), Positives = 54/182 (29%), Gaps = 22/182 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 41 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 100 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 101 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 155 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + +L+ + ++M Sbjct: 156 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLM 215 Query: 180 RL 181 R Sbjct: 216 RR 217 >gi|256019115|ref|ZP_05432980.1| General secretion pathway protein F [Shigella sp. D9] gi|332280220|ref|ZP_08392633.1| general secretion pathway protein F [Shigella sp. D9] gi|332102572|gb|EGJ05918.1| general secretion pathway protein F [Shigella sp. D9] Length = 407 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + L+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQASGVYW 229 >gi|82545403|ref|YP_409350.1| type II secretion protein [Shigella boydii Sb227] gi|81246814|gb|ABB67522.1| putative type II secretion protein [Shigella boydii Sb227] gi|332091447|gb|EGI96532.1| general secretion pathway protein F [Shigella boydii 3594-74] Length = 407 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVMLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMV 178 + + T V + L + L+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPSSTRALIAMSDALQASGVYW 229 >gi|260771242|ref|ZP_05880169.1| type 4 fimbrial assembly protein PilC [Vibrio furnissii CIP 102972] gi|260613839|gb|EEX39031.1| type 4 fimbrial assembly protein PilC [Vibrio furnissii CIP 102972] Length = 408 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 22/180 (12%), Positives = 57/180 (31%), Gaps = 14/180 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + H +K R D + + G+P+ A+ ++ ++S +V + Sbjct: 61 LTHRVKTR------DITLLTRQLSTMLTTGVPIVQALKLVGDNHRKAEMKSILAQVTKGV 114 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G +S+++ + + GNL+E L+ + ++AKV Sbjct: 115 EAGTPMSKAMRTAS-----PHFDALYVDLIATGEQSGNLAEVFERLATYREKSEQLRAKV 169 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIM 177 + + + + + T+V + +L ++ + Sbjct: 170 IKALIYPAMVMLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQILKLSHGVQAYSLW 229 >gi|229587498|ref|YP_002860536.1| bacterial type II secretion system protein F domain protein [Clostridium botulinum Ba4 str. 657] gi|229260271|gb|ACQ51308.1| bacterial type II secretion system protein F domain protein [Clostridium botulinum Ba4 str. 657] Length = 308 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 78/187 (41%), Gaps = 1/187 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++H R + F NAL I +R +S+A+ + + P++ EF +I+ Sbjct: 120 IEHKGTNRVIEINKQFINALIDIGDYLRIDSNLSNAIKNVTPNVAYPLKGEFIYIIKEID 179 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 ++ ++ + V+ + + + N+S+ S +R R K+ Sbjct: 180 SNTNILNALKHFDYRVNSTVVNTWVDSMLFANDKRANVSDLCIKHSAKVRKRLTQNEKLN 239 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A K + +I + ++ +++ +SP + + L ++P G +L + + + + Sbjct: 240 AKLSGLKFISIMIMIILLGMAFMMFGSSPEFKDFL-HEPFGRVLALITGISYTVTTVFIF 298 Query: 181 LMINFDV 187 IN +V Sbjct: 299 RKINKEV 305 >gi|327401124|ref|YP_004341963.1| Type II secretion system F domain-containing protein [Archaeoglobus veneficus SNP6] gi|327316632|gb|AEA47248.1| Type II secretion system F domain protein [Archaeoglobus veneficus SNP6] Length = 647 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 65/184 (35%), Gaps = 7/184 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQH-L 61 I R +K P+A+ + R G+ + + + + V E R++ L Sbjct: 131 ISDRKSKIDRALPHAITFMYSLSRGGMNLIEIFRALSEYYEVYSEVSREAARILRDMEVL 190 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L +++ V P + F + GG++++ L + + +R K Sbjct: 191 GKDLRTALADAVELSPSENFKEFLHGLITIIDSGGDITKYLEDRADFYLERARQDQKNFL 250 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + A ++I + + ++ + V++ L V + IG + Sbjct: 251 EFLGLMAESYITAFVAGPLFLIII----QTVMVVMGQGDETTLYAVIYLVIPIGSFFFAM 306 Query: 182 MINF 185 +I Sbjct: 307 VIKL 310 Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 68/143 (47%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +K+ + L P L+ + + +G+P+ A+A+I + P++ E +++ G+SL Sbjct: 426 RKKAKRTLRLTPIFLNKLASANESGMPIYRAIAMIAKTDTTPLKKEIQKIKSDLDWGISL 485 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++ R + + E+S T+++ + GN++E L ++ + + ++ + + Sbjct: 486 NDALIRFANRLRVFELSRTITLLNEALKSTGNVTEVLMISAKDASNAELLRRERLSNMFM 545 Query: 126 AKASAWIIGSLPFCVSTLVYFTS 148 +I + + ++ T Sbjct: 546 YVIIIYISFFVFIGIVYIITTTF 568 >gi|218288158|ref|ZP_03492457.1| type II secretion system protein [Alicyclobacillus acidocaldarius LAA1] gi|218241517|gb|EED08690.1| type II secretion system protein [Alicyclobacillus acidocaldarius LAA1] Length = 412 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 57/162 (35%), Gaps = 9/162 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 +DF VRAG+P+ A+ V+ Q P++ V G +L ES++ Sbjct: 67 SEDFVPFCRQFATLVRAGVPLVPALQVLEEQLRKGPLKKAVGEVAAKVEGGTALWESLAE 126 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + + G+L E L + +R ++ +K+++ M Sbjct: 127 YPKVFPP-----MFVQMVRAGEASGSLEEVLESTARFEEGQRETVSKIKSALMYPAL--- 178 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + L+ P +++V + L F Sbjct: 179 VSLMSVLVAGFLMINVIPSFVSVFASMHVTLPLPTRIVLFSA 220 >gi|71902056|ref|ZP_00684097.1| type II secretion system protein [Xylella fastidiosa Ann-1] gi|71728184|gb|EAO30374.1| type II secretion system protein [Xylella fastidiosa Ann-1] Length = 405 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 56/171 (32%), Gaps = 7/171 (4%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVR 74 + + + AG P+ A++++ + V + G LS ++ R Sbjct: 68 LIHFTQQLAALLGAGQPLDRALSILTDLPDNEKSRLIIGDVCDIVRGGTPLSIALER--- 124 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 S ++ + GGN+ E L L+ L + ++AKV + +++G Sbjct: 125 --QHGVFSRLYVTMARAGESGGNMPETLQRLADYLERNQVVRAKVINALIYPVILIFVVG 182 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + V L + GV A IG L+ Sbjct: 183 GALAFLLGYVVPQFGAMYESL-DVALPWFTQGVLALGHFIGDWWFLLLAVI 232 >gi|306821151|ref|ZP_07454767.1| general secretory pathway protein F [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550844|gb|EFM38819.1| general secretory pathway protein F [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 402 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 21/172 (12%), Positives = 49/172 (28%), Gaps = 8/172 (4%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R D + + AG+P+ + + Q + E I Sbjct: 58 KRRIK--SKDLSVFSKQLYTMLHAGMPLLTCIETLKDQVQSKLLREKLIEIYQDLQKG-- 113 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +I + + +L GN+ L NLS + ++A++++ + Sbjct: 114 --AIFSTALQKHGEAFPELFISMVRSGELTGNMDGVLNNLSTHYQKEARLQAQIRSAMIY 171 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + + + + G V + +I Sbjct: 172 PIIVLMVAIGVTVFMLVKLVPMFKSFFR--GKALPGITQFVVNLSDFMISKW 221 Score = 36.6 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 12/130 (9%), Positives = 33/130 (25%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+P+ A+ +++ + S + + P Sbjct: 270 FASTLSVLISSGIPIIQAIESSGQVTNNVFIQKNMAYAIDNIKKGSPMSVELKKLEIFPP 329 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G + L S + K ME + G + Sbjct: 330 -----MMISMLKIGEESGAIDSMLQKTSDFFEEELEEAIKRMTSMMEPLIIILVGGIVAV 384 Query: 139 CVSTLVYFTS 148 + ++ Sbjct: 385 VLISVYLPMF 394 >gi|300923615|ref|ZP_07139644.1| general secretion pathway protein F [Escherichia coli MS 182-1] gi|300420132|gb|EFK03443.1| general secretion pathway protein F [Escherichia coli MS 182-1] Length = 407 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 54/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSNSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMV 178 + + T V + L + L+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPVSTRTLIAMSDALQASGVYW 229 >gi|62178711|ref|YP_215128.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224581987|ref|YP_002635785.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62126344|gb|AAX64047.1| putative component in type IV pilin biogenesis [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224466514|gb|ACN44344.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322713164|gb|EFZ04735.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 400 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + +L G L+E L+R + ++ + V+ Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPV---I 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183 I+ V +++F P + + + LL + G L++ Sbjct: 169 ILAMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGWLIL 221 >gi|90407293|ref|ZP_01215479.1| type IV pilus biogenesis protein PilC [Psychromonas sp. CNPT3] gi|90311576|gb|EAS39675.1| type IV pilus biogenesis protein PilC [Psychromonas sp. CNPT3] Length = 410 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 22/165 (13%), Positives = 52/165 (31%), Gaps = 12/165 (7%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 I + AG+P+ +++I + + P+R V G +S+++ + Sbjct: 77 RQIATMLGAGVPLVQTLSLIAHSTDNVPLRELMSSVSNEISTGTPMSKALREHPK----- 131 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + G L ++ + +K+K++ A + G + Sbjct: 132 YFDDLYCDLVDAGEQSGALDTIYDRIAIYKEKSEALKSKIKKAMFYPTAVLVVAGLVTLL 191 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAA------FMLIGIMV 178 + V + L + + + LIGI Sbjct: 192 LLLFVIPQFKTIFAGFGAELPAFTLFVLHISDLVKEYWYLIGIFF 236 Score = 35.9 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 15/131 (11%), Positives = 42/131 (32%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P+ DA+ G S + V ++ G+ ++ ++ Sbjct: 279 FARTLSTTFAAGIPLIDALISASGASGNYVYRSAITKIRTEVMAGMQMNVAMK------M 332 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + + GNL L+ ++ I + + +E + + Sbjct: 333 TGTFPEMLSQMVMIGEESGNLDNMLSKVADIYEQQVDDAVDALTSLLEPFIMVVLGIIVG 392 Query: 138 FCVSTLVYFTS 148 + + Sbjct: 393 GLIVAMYLPIF 403 >gi|21227039|ref|NP_632961.1| putative flagella-like protein J [Methanosarcina mazei Go1] gi|20905361|gb|AAM30633.1| putative flagella related protein J [Methanosarcina mazei Go1] Length = 649 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 20/163 (12%), Positives = 62/163 (38%), Gaps = 4/163 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + D P L + G+ ++DA+A+ + ++SE +R + +L Sbjct: 437 RRIRQIEDQVPEFLKRLASINGTGILLADAIAITAQSNMGRLKSEIKRTVADIRWNSNLV 496 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ R + ++I+ S+ G++ + ++ ++ D +++ ++ Sbjct: 497 DAMKRFEARIRTNMTRRSLSLIAKASESTGDIHQVISTVA----DDADIEKNLKKERSAE 552 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 I + F V ++ + + ++ + Sbjct: 553 MFIYVFIIFVTFFVFLVIVYVLAAFFLPALDGSSNPAMSMGGF 595 Score = 48.2 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 56/181 (30%), Gaps = 6/181 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVR-AGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQ 59 R P+A + R G+ + D + + S EF ++ Sbjct: 131 MKADSRKRAINASMPHATAFLYVLQRGGGMTIYDIMKSLSKHSHLYGTTAREFGNIVRDI 190 Query: 60 HLGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L +S+ P ++ + GG+++ L N + + + N + K Sbjct: 191 EYFGKDLQDSLWDSADRTPSEQFKDLVDGLISIVSSGGDITLYLKNKTDLYKSNANKEHK 250 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 ++ A +I + + +V ++ P +L A I + Sbjct: 251 RFLETLGLLAEVYITVFVVGPLFLMVILVVMNMIDN--GGPTQLYVLVYGAIPFGTMIFL 308 Query: 179 M 179 + Sbjct: 309 V 309 >gi|282853287|ref|ZP_06262624.1| conserved hypothetical protein [Propionibacterium acnes J139] gi|282582740|gb|EFB88120.1| conserved hypothetical protein [Propionibacterium acnes J139] gi|314965660|gb|EFT09759.1| conserved hypothetical protein [Propionibacterium acnes HL082PA2] gi|314982824|gb|EFT26916.1| conserved hypothetical protein [Propionibacterium acnes HL110PA3] gi|315091475|gb|EFT63451.1| conserved hypothetical protein [Propionibacterium acnes HL110PA4] gi|315094229|gb|EFT66205.1| conserved hypothetical protein [Propionibacterium acnes HL060PA1] gi|315104881|gb|EFT76857.1| conserved hypothetical protein [Propionibacterium acnes HL050PA2] gi|327329208|gb|EGE70968.1| hypothetical protein HMPREF9341_00681 [Propionibacterium acnes HL103PA1] Length = 256 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 58/171 (33%), Gaps = 5/171 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D A + V G S A+ + + +G S+S+++ Sbjct: 83 RDVARATRALAGRVSVGEIPSVALEHVADDVE-----VLAQARRAHAVGGSVSDALIATS 137 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + + + + G L+ A +++ R ++A + + A+AS I+ Sbjct: 138 RQPGMAGLVPLAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIM 197 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 G LP + + L G L + +G++ + + Sbjct: 198 GLLPLVGLLMGHVVGAHPTVFLTTTWLGRACLLGSTLLACVGVLWSESLAD 248 >gi|332702381|ref|ZP_08422469.1| general secretion pathway protein F [Desulfovibrio africanus str. Walvis Bay] gi|332552530|gb|EGJ49574.1| general secretion pathway protein F [Desulfovibrio africanus str. Walvis Bay] Length = 433 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 24/175 (13%), Positives = 55/175 (31%), Gaps = 13/175 (7%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65 KR + + + + AGLP+ + I+ Q + + +V E G SL Sbjct: 89 KRVKR--SELAATTRQMSTLLSAGLPLEQVLTAILAQIKGTALYTVLAQVRERVKEGASL 146 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S ++++ + + G L +A L+ ++ K+ + Sbjct: 147 SSALAQHPGVFG-----TTYATMVQAGEQSGALELVMARLADFAEQEMELRRKIWSAITY 201 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI--MV 178 ++ + V L+ + P + ++ R L + Sbjct: 202 PLLMLFVGLGI---VFFLMVYVVPRITEIFVDLQRALPLPTTILIAVSTAFRDWW 253 >gi|320666865|gb|EFX33841.1| hypothetical protein ECOSU61_07037 [Escherichia coli O157:H7 str. LSU-61] Length = 407 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 17/166 (10%), Positives = 45/166 (27%), Gaps = 6/166 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D + V+A +P+ + + QS + + Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSWIQ----EGYTLSDSL 123 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + G+L L L+ R+ +K+++ + + Sbjct: 124 REHSRVFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVAT 183 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + L+ ++ G+ Sbjct: 184 GVVTILLTAVVPKIIEQFDHLGHALPATTRALIAMSDTLQASGVYW 229 >gi|293416405|ref|ZP_06659044.1| general secretion pathway protein F [Escherichia coli B185] gi|291431761|gb|EFF04744.1| general secretion pathway protein F [Escherichia coli B185] Length = 407 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 54/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + L+ ++ G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPATTRALIAMSDTLQASGVYW 229 >gi|238897544|ref|YP_002923223.1| putative tight adherance operon protein C [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465301|gb|ACQ67075.1| putative tight adherance operon protein C [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 275 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 65/162 (40%), Gaps = 4/162 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 +K +I ++T L FP +D+ ++AG+ + +A+ +I+ Sbjct: 115 IKSIIFRKTRLMLSSFPFFIDMTAACIQAGMTIENALTYSAENFYKINEDIASLIIQVVR 174 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + L ++ + + + E+ F + G ++ E L S +R+ + M+++ Sbjct: 175 KAEVHGLQNAMKTLYQDVSFLEIKMFCNAVQNSVDFGSSVYEHLMKFSTDIREIQLMESE 234 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 + + K + + + + ++ S + + + DP Sbjct: 235 EKISKLSVKLTLILFLFI--LIPFILLIISTTALELFLGDPF 274 >gi|294139875|ref|YP_003555853.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12] gi|293326344|dbj|BAJ01075.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12] Length = 293 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 66/160 (41%), Gaps = 5/160 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +K + +++ P+ALD++V V +GL + + + S + E+ Sbjct: 132 VKFRARLVSSRIAGATPDALDLMVVCVESGLTLEAVFGRVGQEMVNFSPELSREWLITEA 191 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L S +++ + + E+ +S + G +++++ ++ R + + Sbjct: 192 ELRLLDSRPQALKNLALRTGIIEIENMVIALSQAEKYGSPIAKSMRLIASDSRQHQYLAL 251 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + + + AK S ++ + V L+ +P + ++ + Sbjct: 252 EEKVGKIPAKMSMPLVVLVMIPVVVLI--VAPTIIELMTS 289 >gi|200387629|ref|ZP_03214241.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604727|gb|EDZ03272.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 400 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + +L G L+E L+R + ++ + V+ Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPA---I 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183 I+ V +++F P + + + LL + G L++ Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGAAWGWLIL 221 >gi|239907482|ref|YP_002954223.1| general secretion pathway protein F [Desulfovibrio magneticus RS-1] gi|239797348|dbj|BAH76337.1| general secretion pathway protein F [Desulfovibrio magneticus RS-1] Length = 409 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 54/164 (32%), Gaps = 6/164 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 + A ++ + AGLP+ A+A ++ Q + F ++E G S +++ Sbjct: 71 ELLAATQVLATLLEAGLPLDKALAALIEQMRAGRGKWVFSHILERIREGQDFSTALAAYP 130 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 P + ++ G L L NL+ L + + +QA Sbjct: 131 AVFPP-----TYVSMVRSAEATGMLPIVLGNLAEYLDRQTQLARTLQAALAYPAFMFVFG 185 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++ + V L ++ +AA+ + Sbjct: 186 LAVMALLLAYVIPEVTRIFVDLRRALPLPTVILIAASDFVRAWW 229 >gi|229521254|ref|ZP_04410674.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae TM 11079-80] gi|229341786|gb|EEO06788.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae TM 11079-80] Length = 408 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 49/149 (32%), Gaps = 6/149 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 D + + G+P+ A+ ++ ++S ++ ++ G LS+++ Sbjct: 67 SKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRT 126 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + ++ GNL E L+ + ++AKV + Sbjct: 127 ASAH-----FDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVL 181 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 + + + + T+V + Sbjct: 182 VALGVSYLMLTMVIPEFESMFKGFGAELP 210 Score = 36.3 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 13/131 (9%), Positives = 35/131 (26%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + S AG+P+ ++ S + V G+ + ++ Sbjct: 277 FSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAAGMPMYIAMRN------ 330 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L + L ++ I + +E ++ + Sbjct: 331 TDAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVG 390 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 391 GLVVAMYLPIF 401 >gi|218698526|ref|YP_002406155.1| type IV pilin biogenesis protein [Escherichia coli IAI39] gi|218368512|emb|CAR16247.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli IAI39] Length = 400 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 56/181 (30%), Gaps = 22/181 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q S + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHSSKQWQALLQSLAYDLEQGIAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + G +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANKLLM 235 Query: 180 R 180 R Sbjct: 236 R 236 >gi|289424541|ref|ZP_06426324.1| type II secretion system F domain protein [Propionibacterium acnes SK187] gi|289428815|ref|ZP_06430495.1| type II secretion system F domain protein [Propionibacterium acnes J165] gi|295129802|ref|YP_003580465.1| type II secretion system F domain protein [Propionibacterium acnes SK137] gi|289155238|gb|EFD03920.1| type II secretion system F domain protein [Propionibacterium acnes SK187] gi|289157816|gb|EFD06039.1| type II secretion system F domain protein [Propionibacterium acnes J165] gi|291377230|gb|ADE01085.1| type II secretion system F domain protein [Propionibacterium acnes SK137] gi|313814294|gb|EFS52008.1| type II secretion system F domain protein [Propionibacterium acnes HL025PA1] gi|313834346|gb|EFS72060.1| type II secretion system F domain protein [Propionibacterium acnes HL056PA1] gi|314974780|gb|EFT18875.1| type II secretion system F domain protein [Propionibacterium acnes HL053PA1] gi|314980264|gb|EFT24358.1| type II secretion system F domain protein [Propionibacterium acnes HL072PA2] gi|314985439|gb|EFT29531.1| type II secretion system F domain protein [Propionibacterium acnes HL005PA1] gi|314987403|gb|EFT31494.1| type II secretion system F domain protein [Propionibacterium acnes HL005PA2] gi|315082165|gb|EFT54141.1| type II secretion system F domain protein [Propionibacterium acnes HL078PA1] gi|315086398|gb|EFT58374.1| type II secretion system F domain protein [Propionibacterium acnes HL002PA3] gi|315097273|gb|EFT69249.1| type II secretion system F domain protein [Propionibacterium acnes HL038PA1] gi|315106264|gb|EFT78240.1| type II secretion system F domain protein [Propionibacterium acnes HL030PA1] gi|327445234|gb|EGE91888.1| type II secretion system F domain protein [Propionibacterium acnes HL013PA2] gi|327447319|gb|EGE93973.1| type II secretion system F domain protein [Propionibacterium acnes HL043PA1] gi|328758434|gb|EGF72050.1| type II secretion system F domain protein [Propionibacterium acnes HL020PA1] gi|332674641|gb|AEE71457.1| hypothetical protein PAZ_c02540 [Propionibacterium acnes 266] Length = 249 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 5/148 (3%) Query: 7 KRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +R + P AL ++ ++ AGLP+ AV + P + RR+ + G+ Sbjct: 101 RRMEQHRAAQLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVPD 160 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S + + + ++ + +S G +SE L+ + L+ K + +A Sbjct: 161 SRAWNDLA---SVEVWRDPAQDVSRAVDSGEGISELLSAHAAQLQVAAAEKTEKKARKAG 217 Query: 126 AK-ASAWIIGSLPFCVSTLVYFTSPGYM 152 + LP + V G + Sbjct: 218 VDAIGPLVCCHLPAFLLVGVVPIIAGMV 245 >gi|27378607|ref|NP_770136.1| hypothetical protein blr3496 [Bradyrhizobium japonicum USDA 110] gi|27351755|dbj|BAC48761.1| blr3496 [Bradyrhizobium japonicum USDA 110] Length = 302 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 65/147 (44%), Gaps = 5/147 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + L ++ A P+ +D++V AG+ + +A + + + P+ +++ Sbjct: 141 LAVLKRRFDAAIRVGTPDMIDLLVVCSEAGMGLESGLARVAQEMSETNPPMARVLHCLLD 200 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + S++ ++ + F T+++ Q G + +AL N++ LR + K Sbjct: 201 DLRILPNRSDAFDKLGTTSDG--LRRFGTMVAQSLQYGTPVGQALRNIAVDLRRERITKL 258 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + +A + AK + ++ L + ++ Sbjct: 259 EERAHKLGAKLTIPMVLFLLPAMFVVL 285 >gi|134295599|ref|YP_001119334.1| type II secretion system protein [Burkholderia vietnamiensis G4] gi|134138756|gb|ABO54499.1| type II secretion system protein [Burkholderia vietnamiensis G4] Length = 330 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 61/158 (38%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57 ++ R +D+ P +D++ GL + ++ V+ + SE Sbjct: 168 VQRRAAARRQSVIDELPLFVDMLRLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEVGIAQR 227 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+ R+ +++ + ++ + GG + E L LR+ + Sbjct: 228 QFAAGRTRDQSMQRLSSGFDNEDLRAIARLMVQVDKHGGAVQEPLKQFGDRLRETRRAML 287 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + K + ++ +L + L+ PG + V+ Sbjct: 288 RDRIGRLTVKMTGVMVVTLLPAL--LIVTAGPGLLAVM 323 >gi|308273128|emb|CBX29731.1| hypothetical protein N47_F14260 [uncultured Desulfobacterium sp.] Length = 403 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 21/173 (12%), Positives = 49/173 (28%), Gaps = 5/173 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + AGLP+ + ++ Q + + I+ S Sbjct: 62 ESDIIIFARQFSTMIDAGLPILQCLDILYSQQENKTFKIMLKKIKESVESGS----TLAD 117 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 ++ T + + GG L L L+ + +K++V+ + + I Sbjct: 118 ALKKYPEQFDDLFTNMIAAGETGGVLDVILQRLAAYIEKASKLKSQVKGAMVYPAVTLII 177 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + V + V A + ++ L++ Sbjct: 178 AFIVLVVILVFVIPVFQQMFKDFGGELP-VPTQVVVAMSEFVKTKIIYLIVAI 229 Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 11/130 (8%), Positives = 37/130 (28%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+ + +A+ ++ S + + + +SE + Sbjct: 271 FTRTMSTMLSSGVSILEALDIVAKTSGNKIIE-----KAIYDVRSGISEGRTMSEPLWES 325 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L L+ ++ + + +E ++ +L Sbjct: 326 GIFPSMVCQMISVGESTGALDVMLSKIADFYDEEVDQAVSNLMSLIEPFMLVFLGVTLGG 385 Query: 139 CVSTLVYFTS 148 V + Sbjct: 386 LVIAMYLPIF 395 >gi|157162436|ref|YP_001459754.1| general secretion pathway protein F [Escherichia coli HS] gi|188493519|ref|ZP_03000789.1| general secretion pathway protein F [Escherichia coli 53638] gi|157068116|gb|ABV07371.1| general secretion pathway protein F [Escherichia coli HS] gi|188488718|gb|EDU63821.1| general secretion pathway protein F [Escherichia coli 53638] Length = 407 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + L+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPATTRALIAMSDALQASGVYW 229 >gi|331654569|ref|ZP_08355569.1| general secretion pathway protein F [Escherichia coli M718] gi|331047951|gb|EGI20028.1| general secretion pathway protein F [Escherichia coli M718] Length = 407 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + L+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPATTRALIAMSDALQASGVYW 229 >gi|229824690|ref|ZP_04450759.1| hypothetical protein GCWU000182_00038 [Abiotrophia defectiva ATCC 49176] gi|229791019|gb|EEP27133.1| hypothetical protein GCWU000182_00038 [Abiotrophia defectiva ATCC 49176] Length = 404 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 65/178 (36%), Gaps = 8/178 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISR 71 D +V + AG+ V DA+ ++ + + V V G +LSE++SR Sbjct: 62 TRDLSVFCRQLVSMINAGVTVIDALDMLSVSTENKVMAKTITNVRANIQKGETLSEAMSR 121 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + + G L A + ++ + + A ++ S+ Sbjct: 122 HTKVFP-----SIMISMVAAGEASGKLEVAFSRMAERFEKKAKLDAMLKKASVYPTIVIV 176 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG--IMVMRLMINFDV 187 + + + + T + L + +L V + +I +++ ++I F V Sbjct: 177 VSIIVIIVMLVQIIPTYKSMFDQLGAELPIQTVLAVKLSDFIIAKWYLIIAVLIAFIV 234 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/140 (11%), Positives = 49/140 (35%), Gaps = 5/140 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 + + + V AGLP+ +A+ + + V + ++++ + + + Sbjct: 264 IKNAASSFARTLSTLVYAGLPMVEALEITANTMDNYVYKQCLKIVKDEVVKGVPMSEPIQ 323 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P ++ + G++ L+ L+ + M + ++E Sbjct: 324 NSKLFPP-----MVGYMTKIGEETGDVEGMLSRLADYYDEEVEMATQTLMAALEPFIMMV 378 Query: 132 IIGSLPFCVSTLVYFTSPGY 151 + G + +S ++ Y Sbjct: 379 LAGIVIMLISVIMGPMISMY 398 >gi|320354293|ref|YP_004195632.1| Type II secretion system F domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320122795|gb|ADW18341.1| Type II secretion system F domain protein [Desulfobulbus propionicus DSM 2032] Length = 401 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 56/170 (32%), Gaps = 6/170 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 D + + AGLP+ + ++ Q S+ + + G +L++S+ + Sbjct: 63 KDIVIFTRQLSTMIDAGLPLVQCLQILGKQQSNATFKKVLLSIQNDVETGTTLADSMRKH 122 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + +LGG L L+ L+ ++ K++ I Sbjct: 123 PK-----VFDNLYSNMIEAGELGGILDTILSRLASFKEKAMALQKKIKGAMTYPVICLAI 177 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + V + + L V + + G ++ LM Sbjct: 178 SILILIVILVFVIPVFVEMFASMDSALPAVTQLVVDMSDFVKGNIIYILM 227 Score = 47.4 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 17/131 (12%), Positives = 43/131 (32%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77 + +++G+P+ DA+ V+ S + + RV E+ G ++E + Sbjct: 271 FTRTLSTMLQSGVPILDALQVVARTSGNKIVERAVLRVSESIAEGRPIAEPLEESG---- 326 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G L L ++ + + + +E ++ G + Sbjct: 327 --VFPNMVVQMINVGESVGALDTMLEKIADFYDEEVDQAVENLTAMIEPFMMVFLGGMIG 384 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 385 GLVVAMYLPIF 395 >gi|170766029|ref|ZP_02900840.1| general secretion pathway protein GspF [Escherichia albertii TW07627] gi|170125175|gb|EDS94106.1| general secretion pathway protein GspF [Escherichia albertii TW07627] Length = 407 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + ML+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDALQTSGVYW 229 >gi|254498866|ref|ZP_05111573.1| putative type IV pilus, mannose-sensitive hemagglutinin protein [Legionella drancourtii LLAP12] gi|254351920|gb|EET10748.1| putative type IV pilus, mannose-sensitive hemagglutinin protein [Legionella drancourtii LLAP12] Length = 408 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 23/165 (13%), Positives = 61/165 (36%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 D+ + +RAG+P++ A+ + + + + ++++ T + G SL+ ++++ Sbjct: 67 DELHIFCRQMYSLIRAGIPIATAITRLGETTRNKTLADALQKIVITLNKGSSLNVAMAQF 126 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 S F + + + GNL +L++ L ++ KV++ Sbjct: 127 PNI-----FSTFFLNLVIIGENTGNLDNIFLHLAKYLELEVDITKKVKSALRYPIMVFAA 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 I ++ V + + +A + +I Sbjct: 182 IIIALLIINVFVIPAFAKLYASMHGILPLPTRILLAISNFIINYW 226 >gi|229524410|ref|ZP_04413815.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae bv. albensis VL426] gi|229337991|gb|EEO03008.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae bv. albensis VL426] Length = 408 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 18/148 (12%), Positives = 49/148 (33%), Gaps = 6/148 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D + + G+P+ A+ ++ ++S ++ ++ G LS+++ Sbjct: 68 KDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTA 127 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + ++ GNL E L+ + ++AKV + + Sbjct: 128 SAH-----FDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLV 182 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR 160 + + + T+V + Sbjct: 183 ALGVSYLMLTMVIPEFESMFKGFGAELP 210 Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 13/131 (9%), Positives = 36/131 (27%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + S AG+P+ ++ S + V G+ + ++ Sbjct: 277 FSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAAGMPMYIAMRN------ 330 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + + G L + L ++ I + +E ++ + Sbjct: 331 TEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVG 390 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 391 GLVVAMYLPIF 401 >gi|254508850|ref|ZP_05120960.1| type IV pilin biogenesis protein PilC [Vibrio parahaemolyticus 16] gi|219548236|gb|EED25251.1| type IV pilin biogenesis protein PilC [Vibrio parahaemolyticus 16] Length = 408 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 22/171 (12%), Positives = 57/171 (33%), Gaps = 8/171 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + I +R + D + + G+P+ A+ ++ ++S ++++ Sbjct: 57 LYKRITQRVKR--KDITILTRQLATMLMTGVPLIQALKLVADNHRKAEMKSILSQIVKGV 114 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G LS+++ + + + GNL+E ++ + +KAKV Sbjct: 115 ESGTPLSKTLRTASTH-----FDTLYVDLVATGEQSGNLAEVFERIATYREKSEQLKAKV 169 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + S+ + + T+V + D + + Sbjct: 170 IKALIYPSMVVITALSVTYLMLTVVIPEFESMFSGFGADLPWFTAQVLILS 220 Score = 34.3 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 13/131 (9%), Positives = 38/131 (29%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + S AG+P+ + +++ +V G+ + ++ Sbjct: 277 FSRTLATSFSAGIPILSCLKTSAKTANNIHYQNAIEQVYADTAAGMPIYIAMRN------ 330 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 Q + + + G+L + L ++ I + +E ++ + Sbjct: 331 SQTFPEMVLQMVMIGEESGSLDDMLNKVATIYEFEIDNTVDNLGKVLEPMIIIFLGVVVG 390 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 391 GLVVAMYLPIF 401 >gi|315179152|gb|ADT86066.1| type IV pilin biogenesis protein PilC [Vibrio furnissii NCTC 11218] Length = 408 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 22/180 (12%), Positives = 57/180 (31%), Gaps = 14/180 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + H +K R D + + G+P+ A+ ++ ++S +V + Sbjct: 61 LTHRVKTR------DITLLTRQLSTMLTTGVPIVQALKLVGDNHRKAEMKSILAQVTKGV 114 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G +S+++ + + GNL+E L+ + ++AKV Sbjct: 115 EAGTPMSKAMRTAS-----PHFDALYVDLIATGEQSGNLAEVFERLATYREKSEQLRAKV 169 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIM 177 + + + + + T+V + +L ++ + Sbjct: 170 IKALIYPAMVMLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQILKLSHGVQAYSLW 229 >gi|313906429|ref|ZP_07839766.1| Type II secretion system F domain [Eubacterium cellulosolvens 6] gi|313468730|gb|EFR64095.1| Type II secretion system F domain [Eubacterium cellulosolvens 6] Length = 402 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 20/149 (13%), Positives = 48/149 (32%), Gaps = 6/149 (4%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 I+ + + +P + + AGL + A+ I E R G+ Sbjct: 259 KIRAHREELIRRYPEIVSELQLYTAAGLSLRQAMKRIARNEP-----EAERCCYEMENGV 313 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++ +R E + +++ G LSE L ++ + + +A+V Sbjct: 314 LEQDAYTRFGERCGTAEYRKLALLLAQSQMKGGARLSELLEEEAQGAFENRKRRARVLGE 373 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 + + L + ++ + Sbjct: 374 KAAVRMVLPMGMMLLIVLIIVMVPAFLTF 402 >gi|300950840|ref|ZP_07164725.1| general secretion pathway protein F [Escherichia coli MS 116-1] gi|300958337|ref|ZP_07170479.1| general secretion pathway protein F [Escherichia coli MS 175-1] gi|312972781|ref|ZP_07786954.1| general secretion pathway protein F [Escherichia coli 1827-70] gi|300314980|gb|EFJ64764.1| general secretion pathway protein F [Escherichia coli MS 175-1] gi|300449876|gb|EFK13496.1| general secretion pathway protein F [Escherichia coli MS 116-1] gi|309703396|emb|CBJ02735.1| type II secretion system protein F [Escherichia coli ETEC H10407] gi|310332723|gb|EFP99936.1| general secretion pathway protein F [Escherichia coli 1827-70] gi|323941940|gb|EGB38119.1| general secretion pathway protein F [Escherichia coli E482] Length = 407 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMV 178 + + T V + L + L+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPVSTRTLIAMSDALQASGVYW 229 >gi|255322157|ref|ZP_05363303.1| type II secretion system protein [Campylobacter showae RM3277] gi|255300530|gb|EET79801.1| type II secretion system protein [Campylobacter showae RM3277] Length = 415 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 63/160 (39%), Gaps = 9/160 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 ++ A + AG+ + D++ + + D +++ F + + + G SL+++I++ Sbjct: 73 NNLIAAFRQLSVMTNAGISIHDSIKEVSKSTEDKRLKAIFATLNDDLNQGQSLTDAITKF 132 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 E+ + + GN+SE+L LS IL++ + K + + Sbjct: 133 -----KGELGDVVIAMVKLGESTGNMSESLHKLSDILQEVWENQRKFKKALRYPI---IV 184 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 + ++ L+ F P + + L + + Sbjct: 185 MSAMAIAFIILMIFVVPQFREIFEQLGAKLPLPTIILLSI 224 >gi|320184379|gb|EFW59191.1| General secretion pathway protein F [Shigella flexneri CDC 796-83] Length = 407 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVMLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMV 178 + + T V + L + L+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPSSTRALIAMSDALQASGVYW 229 >gi|320174027|gb|EFW49197.1| General secretion pathway protein F [Shigella dysenteriae CDC 74-1112] Length = 407 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVMLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMV 178 + + T V + L + L+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPSSTRALIAMSDALQASGVYW 229 >gi|300931842|ref|ZP_07147139.1| general secretion pathway protein F [Escherichia coli MS 187-1] gi|300460265|gb|EFK23758.1| general secretion pathway protein F [Escherichia coli MS 187-1] Length = 407 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + L+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRALIAMSDALQASGVYW 229 >gi|212637455|ref|YP_002313980.1| type IV pilus biogenesis protein PilC [Shewanella piezotolerans WP3] gi|212558939|gb|ACJ31393.1| Type IV pilus biogenesis protein PilC [Shewanella piezotolerans WP3] Length = 421 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 16/172 (9%), Positives = 49/172 (28%), Gaps = 6/172 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + + AG+P+ + ++ +R ++ G+ LSE++ Sbjct: 80 DIAMVTRQVATMLAAGVPIVTTLELLGKGHEKPKMRELLATIVNDVQSGIPLSEALR--- 136 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G+L ++ + +K+K++ + + Sbjct: 137 --PHRLYFDELYVDLVAAGEHSGSLDAVFDRIATYREKSEALKSKIKKAMFYPASVVIVA 194 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + V + + V + L + ++ Sbjct: 195 VIVTALLLLFVVPQFETIFQGFGAELPAFTQIVVNLSRWLQSSWYIFVIAII 246 >gi|308047938|ref|YP_003911504.1| general secretion pathway protein F [Ferrimonas balearica DSM 9799] gi|307630128|gb|ADN74430.1| general secretion pathway protein F [Ferrimonas balearica DSM 9799] Length = 407 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 21/171 (12%), Positives = 47/171 (27%), Gaps = 6/171 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + V GLP+ + + + QS P + + Sbjct: 70 ALALITRQLSTLVAGGLPLEECIKAVAEQSEQPRLKSMLMAVR----AKVVEGYGLAESM 125 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 Q + + G+L L L+ R+ + AK+ + + Sbjct: 126 AEYPQVFDELYVAMVASGEKSGHLEVVLERLADYTERRQELNAKLTQALVYPIILTVVAI 185 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183 S+ + T V + L L+ ++ G+ ++ + Sbjct: 186 SVVVFLLTSVVPDVVSQFDHLGQALPATTQFLIDISDFLQHYGLYMLIAIA 236 Score = 34.7 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 13/129 (10%), Positives = 35/129 (27%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + +G+P+ +A+ + + + E S Sbjct: 277 FARTLSTLSSSGVPMLEAMKIASDVLLNLKVK-----NAVSEATGKVREGASLRASLQQT 331 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G L + LA + + V ++ + G + F Sbjct: 332 KLFPPMMLHMIASGEKSGELDDMLARAADNQDREFEAQVSVALAVLQPLIVVVMAGIVLF 391 Query: 139 CVSTLVYFT 147 V +++ Sbjct: 392 IVISILQPM 400 >gi|255021306|ref|ZP_05293354.1| Type IV fimbrial assembly protein PilC [Acidithiobacillus caldus ATCC 51756] gi|254969169|gb|EET26683.1| Type IV fimbrial assembly protein PilC [Acidithiobacillus caldus ATCC 51756] Length = 418 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 20/174 (11%), Positives = 56/174 (32%), Gaps = 6/174 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 + + + AG+P+ + ++ S ++ + +++ + G SLS+S++ Sbjct: 74 EAQIVVMVRQLSTMINAGVPLVQSFELLISATSQPGMKKLLKGILKHLNEGESLSQSLAH 133 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 R + + GG L L L+ + KV++ A Sbjct: 134 YPR-----YFDRLFVSLVQAGEQGGILDTILLRLADYREKSLALSKKVKSAMFYPAAIIS 188 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 ++ + + V + + + + G + +++ Sbjct: 189 VMIVVVVILMIFVIPVFSNLFKSFGATLPLLTQMVINLSDWMKGHWYIVVLLPI 242 >gi|269966287|ref|ZP_06180375.1| type IV pilin biogenesis protein PilC [Vibrio alginolyticus 40B] gi|269829084|gb|EEZ83330.1| type IV pilin biogenesis protein PilC [Vibrio alginolyticus 40B] Length = 407 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 50/161 (31%), Gaps = 12/161 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + H +K R D I + G+P+ A+ ++ ++S V Sbjct: 60 LSHRVKGR------DITVFTRQISTMLITGVPLVQALKLVSENHKKAEMKSILMSVTRAV 113 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G +S+++ + + + GNL+E L+ + ++AKV Sbjct: 114 EAGTPMSKAMRTASEHFDPLYTD-----LIATGEQSGNLAEVFERLATYREKNEQLRAKV 168 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 + + + F + T V D Sbjct: 169 IKALIYPAMVVLVALGVSFIMLTKVIPEFEKMFVGFGADLP 209 Score = 34.7 bits (78), Expect = 5.4, Method: Composition-based stats. Identities = 13/136 (9%), Positives = 37/136 (27%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72 + S AG+P+ ++ S + V G+ + ++ Sbjct: 271 AAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNLHYQLAIEEVYRDTAAGMPMYVAMRN- 329 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G L + L ++ I + + +E ++ Sbjct: 330 -----CNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFL 384 Query: 133 IGSLPFCVSTLVYFTS 148 + V+ + Sbjct: 385 GIVVGGLVTAMYLPIF 400 >gi|167550661|ref|ZP_02344418.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205324362|gb|EDZ12201.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 400 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + +L G L+E L+R + ++ + V+ Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPA---I 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183 I+ V +++F P + + + LL + G L++ Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGWLIL 221 >gi|262166465|ref|ZP_06034202.1| type 4 fimbrial assembly protein PilC [Vibrio mimicus VM223] gi|262026181|gb|EEY44849.1| type 4 fimbrial assembly protein PilC [Vibrio mimicus VM223] Length = 408 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 18/148 (12%), Positives = 48/148 (32%), Gaps = 6/148 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D + + G+P+ A+ ++ ++S ++ + G LS+++ Sbjct: 68 KDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKGVEAGTPLSKAMRTA 127 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + ++ GNL E L+ + ++AKV + + Sbjct: 128 SAH-----FDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLV 182 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR 160 + + + T+V + Sbjct: 183 ALGVSYLMLTMVIPEFESMFKGFGAELP 210 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 13/131 (9%), Positives = 36/131 (27%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + S AG+P+ ++ S + V G+ + ++ Sbjct: 277 FSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAAGMPMYIAMRN------ 330 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + + G L + L ++ I + +E ++ + Sbjct: 331 TEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVG 390 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 391 GLVVAMYLPIF 401 >gi|332799372|ref|YP_004460871.1| Type II secretion system F domain-containing protein [Tepidanaerobacter sp. Re1] gi|332697107|gb|AEE91564.1| Type II secretion system F domain protein [Tepidanaerobacter sp. Re1] Length = 402 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 53/161 (32%), Gaps = 6/161 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + + AG+ + +++ I Q+ + +R + G SL+E+ Sbjct: 66 DLSVFCRQLAVMLDAGVNILESLTSIAKQTENKRLREIIFNLNLHIRRGDSLAEACKNQP 125 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + +L GNLS+ L LS D K+++ + + I Sbjct: 126 -----YVFSEIFICLIEAGELSGNLSDILKMLSAYYSDMAKQNEKIKSSMVYPSILSIIS 180 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + ++T V + + + +I Sbjct: 181 LFVVVFLTTKVLPVYANIFSSAGVQLPKITQIFLLLGSNMI 221 Score = 35.1 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 19/140 (13%), Positives = 37/140 (26%), Gaps = 9/140 (6%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 L I+ +G+P+ A+ V + V + Sbjct: 266 KKSISSQIAKLLFILSS---SGIPMLKALEVSCNTVKNRVIKMELIKVHEGLKQG----- 317 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + M + S I + G L E L + + + L +E Sbjct: 318 -KNLSELMSEKIFSPIMVEIIAIGEESGALEEMLDKAASFNENEAKILEDRLILFIEPVI 376 Query: 129 SAWIIGSLPFCVSTLVYFTS 148 + + F V ++V Sbjct: 377 IIVLTLIISFIVISVVIPMF 396 >gi|269961299|ref|ZP_06175665.1| MSHA biogenesis protein MshG [Vibrio harveyi 1DA3] gi|269833965|gb|EEZ88058.1| MSHA biogenesis protein MshG [Vibrio harveyi 1DA3] Length = 407 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 20/160 (12%), Positives = 47/160 (29%), Gaps = 6/160 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + +AG+P+ ++ ++ + E V+ G LS + Sbjct: 71 FSRQLFSLTKAGVPLLRSMRGLLQNCENKQLKEALEDVVAELSNGRGLSSA-----MQPH 125 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + S + + G L +AL L+ + +++A I Sbjct: 126 TKVFSPLFVSMINVGENTGRLDQALLQLANYYEQELETRKRIKAAMRYPTFVIVFITIAM 185 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 F ++ LV + + +A + + Sbjct: 186 FILNILVIPEFASMFMRFGVELPLPTRILIATSNFFVNYW 225 Score = 37.4 bits (85), Expect = 0.99, Method: Composition-based stats. Identities = 11/135 (8%), Positives = 37/135 (27%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 +++G+P++ ++A+ + + ++ + Sbjct: 268 RAQLSRFSRTFSLMLKSGVPLNQSLALAGEALGNKFLE-----NRILEMKAAIEAGSTIS 322 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 V + + + + + G + E L +S + K +E + Sbjct: 323 VTAINSKIFTPLVIQMIAVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPLLLVIV 382 Query: 133 IGSLPFCVSTLVYFT 147 G + + Sbjct: 383 AGMVMVLALGIFLPM 397 >gi|198245628|ref|YP_002214095.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|207855657|ref|YP_002242308.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|197940144|gb|ACH77477.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|206707460|emb|CAR31734.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326621838|gb|EGE28183.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 400 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + +L G L+E L+R + ++ + V+ Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPA---I 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183 I+ V +++F P + + + LL + G L++ Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGWLIL 221 >gi|196229421|ref|ZP_03128286.1| type II secretion system protein [Chthoniobacter flavus Ellin428] gi|196226653|gb|EDY21158.1| type II secretion system protein [Chthoniobacter flavus Ellin428] Length = 438 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 49/153 (32%), Gaps = 9/153 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISR 71 + + AGLP+ + V+ Q + + + G + SES+++ Sbjct: 85 SKTLMIFTRQLATLIDAGLPLLRGLTVLAKQERDPVLAKTINNLADAVQSGSTFSESMAQ 144 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + +LGG L L L+ + +K KV + Sbjct: 145 HPLI-----FNKLYINMVKAGELGGVLELVLNRLAEFQEKAQKVKNKVVSAMAYPVIVLI 199 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 I + L+ F P + + + G L Sbjct: 200 IAIL---IMVFLMAFIVPKFEQIFHDMLGGKPL 229 Score = 37.4 bits (85), Expect = 0.84, Method: Composition-based stats. Identities = 16/154 (10%), Positives = 40/154 (25%), Gaps = 10/154 (6%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + V +G+P+ A+ + + + V + + Sbjct: 294 RKSSISR----FSRTLGTLVTSGVPILQALNITRDTAGNTVIANAVTKVHDAVKEGESIV 349 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 P + + G L E L ++ + D + + +E Sbjct: 350 QPLEASGVFPP-----MVISMVDVGEETGQLPEMLLKIAEVYDDEVDNAVEGLTSLLEPI 404 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 ++ + V L + + G Sbjct: 405 MIVFLALIVGTIVIALFMPLI-EIIKQMGGQNAG 437 >gi|307151679|ref|YP_003887063.1| type II secretion system F domain-containing protein [Cyanothece sp. PCC 7822] gi|306981907|gb|ADN13788.1| Type II secretion system F domain protein [Cyanothece sp. PCC 7822] Length = 404 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 56/163 (34%), Gaps = 8/163 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+ + + V+ Q + ++ + G LSE++++ Sbjct: 69 FSRQFSVMINAGVAIVRCLGVLSDQCGNKKLKKALAGISSEVQQGSPLSEAMAKYPDC-- 126 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + GG L E LA L+++L D +K ++++ A + + Sbjct: 127 ---FDQLYVSMVEAGETGGVLDEVLARLAKLLEDMARLKNQIKSAMAYPVAVGILAVIVF 183 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHM--LLGVAAAFMLIGIMV 178 F ++ + L + +L ++ I + Sbjct: 184 FAMTVFLIPVFAKIFLDLKVELPALTKFMLFLSGVMRSWKIFI 226 Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 12/134 (8%), Positives = 41/134 (30%), Gaps = 7/134 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + R+G+P+ ++ ++ + + + + G +S ++ + Sbjct: 273 FCRVFGTLTRSGVPILSSLEIVCNTVGNQVIANAIAGAVSEIQQGGMMSIALQKA----- 327 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L + ++ D K +E +I G + Sbjct: 328 -NVFPALAIQMISIGEETGELDAMMMKVADFYEDEVEQAVKALTSVIEPLMMVFIAGMVG 386 Query: 138 FCVSTLVYFTSPGY 151 + ++ + Sbjct: 387 TILLSMYLPMFAVF 400 >gi|194444325|ref|YP_002039374.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194402988|gb|ACF63210.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 400 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + +L G L+E L+R + ++ + V+ Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPA---I 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183 I+ V +++F P + + + LL + G L++ Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGAAWGWLIL 221 >gi|153003541|ref|YP_001377866.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5] gi|152027114|gb|ABS24882.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5] Length = 419 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 19/140 (13%), Positives = 45/140 (32%), Gaps = 6/140 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AGLP+ A+ ++ QS +P + V G + ++++ + Sbjct: 85 FTRQFSVMIDAGLPLVQALDILATQSDNPAFKKVLTAVKVRVESGSTFADALGEHPKA-- 142 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++GG L L L + + +K +V++ + + + Sbjct: 143 ---FDDLFVQLVRAGEIGGILDTILQRLGAYIEKNEKLKRRVKSAMVYPSIVLTVGVGVT 199 Query: 138 FCVSTLVYFTSPGYMNVLIN 157 + V T Sbjct: 200 VVLLAFVTPTFEKMFKDFGG 219 Score = 41.6 bits (96), Expect = 0.056, Method: Composition-based stats. Identities = 10/130 (7%), Positives = 38/130 (29%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+P+ DA+ ++ + + + + + + + P Sbjct: 288 FTRTLGTMLSSGVPILDALQIVARSAGNKIIEKGVMYVRAKISEGKTIAGPLAETQVFPP 347 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G + L ++ D ++ +E ++ G + Sbjct: 348 -----MVVQMIGVGEATGAMDAMLNKIADFYDDEVDVAVAGLTAMIEPVMMVFLGGMVGG 402 Query: 139 CVSTLVYFTS 148 + + Sbjct: 403 FLVAMYLPIF 412 >gi|15598298|ref|NP_251792.1| general secretion pathway protein F [Pseudomonas aeruginosa PAO1] gi|107102651|ref|ZP_01366569.1| hypothetical protein PaerPA_01003716 [Pseudomonas aeruginosa PACS2] gi|116051098|ref|YP_790071.1| general secretion pathway protein F [Pseudomonas aeruginosa UCBPP-PA14] gi|218890698|ref|YP_002439562.1| general secretion pathway protein F [Pseudomonas aeruginosa LESB58] gi|254236072|ref|ZP_04929395.1| general secretion pathway protein F [Pseudomonas aeruginosa C3719] gi|254241799|ref|ZP_04935121.1| general secretion pathway protein F [Pseudomonas aeruginosa 2192] gi|296388399|ref|ZP_06877874.1| general secretion pathway protein F [Pseudomonas aeruginosa PAb1] gi|313108412|ref|ZP_07794428.1| general secretion pathway protein F [Pseudomonas aeruginosa 39016] gi|139790|sp|Q00513|GSPF_PSEAE RecName: Full=General secretion pathway protein F gi|9949212|gb|AAG06490.1|AE004734_8 general secretion pathway protein F [Pseudomonas aeruginosa PAO1] gi|45435|emb|CAA44534.1| secretion protein XcpS [Pseudomonas aeruginosa PAO1] gi|115586319|gb|ABJ12334.1| general secretion pathway protein F [Pseudomonas aeruginosa UCBPP-PA14] gi|126168003|gb|EAZ53514.1| general secretion pathway protein F [Pseudomonas aeruginosa C3719] gi|126195177|gb|EAZ59240.1| general secretion pathway protein F [Pseudomonas aeruginosa 2192] gi|218770921|emb|CAW26686.1| general secretion pathway protein F [Pseudomonas aeruginosa LESB58] gi|310880930|gb|EFQ39524.1| general secretion pathway protein F [Pseudomonas aeruginosa 39016] Length = 405 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 53/158 (33%), Gaps = 9/158 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + V+A LP+ +A+ +S ++S V G SL+ S+ Sbjct: 66 RDLALVTRQLATLVQAALPIEEALRAAAAQSTSQRIQSMLLAVRAKVLEGHSLAGSLREF 125 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P + G+L L L+ R+ + K+Q + + Sbjct: 126 PTAFP-----ELYRATVAAGEHAGHLGPVLEQLADYTEQRQQSRQKIQLALLYPV---IL 177 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + + V L+ + P + V I+ + LL Sbjct: 178 MVASLAIVGFLLGYVVPDVVRVFIDSGQTLPLLTRVLI 215 Score = 40.5 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 47/130 (36%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + R+G+P+ +A+A+ ++ + E + + G SL+ S+ ++ P Sbjct: 274 FASTLAILTRSGVPLVEALAIAAEVIANRIIRNEVVKAAQKVREGASLTRSLEATGQFPP 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L + LA +R + + + E ++ + Sbjct: 334 M------MLHMIASGERSGELDQMLARTARNQENDLAAQIGLMVGLFEPFMLIFMGAVVL 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 VIVLAILLPI 397 >gi|160936832|ref|ZP_02084197.1| hypothetical protein CLOBOL_01721 [Clostridium bolteae ATCC BAA-613] gi|158440213|gb|EDP17959.1| hypothetical protein CLOBOL_01721 [Clostridium bolteae ATCC BAA-613] Length = 403 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 22/171 (12%), Positives = 49/171 (28%), Gaps = 4/171 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 P + + AG+P+S A+ V G + D + Sbjct: 65 QRQLPLLCRQLAAMLTAGVPLSRALEVSAGSARDKTLKVTLAGLRESIHKGR----TLSE 120 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 ++ + G L E L ++ + + KV+A I Sbjct: 121 AMEEMKGVFPNLLVYMTRTGESSGRLDELLHKMAGYYGREEELNGKVRAAMTYPVILFSI 180 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + T V + M++ ++ + G++ + L++ Sbjct: 181 TVLAAVFMLTTVLPQFASMLQEQELPWITRMMMRLSFSLRSRGVLYIMLIL 231 >gi|16763532|ref|NP_459147.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167990016|ref|ZP_02571116.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168243442|ref|ZP_02668374.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194450042|ref|YP_002044112.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|16418642|gb|AAL19106.1| putative component in type IV pilin biogenesis [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194408346|gb|ACF68565.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205331469|gb|EDZ18233.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205337541|gb|EDZ24305.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|261245375|emb|CBG23164.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267991821|gb|ACY86706.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156770|emb|CBW16245.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911112|dbj|BAJ35086.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222282|gb|EFX47354.1| Type IV fimbrial assembly protein PilC [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128462|gb|ADX15892.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987095|gb|AEF06078.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 400 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + +L G L+E L+R + ++ + V+ Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPA---I 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183 I+ V +++F P + + + LL + G L++ Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGWLIL 221 >gi|117918611|ref|YP_867803.1| general secretion pathway protein F [Shewanella sp. ANA-3] gi|117610943|gb|ABK46397.1| general secretion pathway protein F [Shewanella sp. ANA-3] Length = 407 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 57/172 (33%), Gaps = 8/172 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 + I V AGLP+ + + + Q + S V G SL++S++ Sbjct: 67 AELALITRQIATLVAAGLPIEECLKAVGQQCEKARLASMIMAVRSRVVEGYSLADSLAEF 126 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G+L L L+ R+ +K+K+Q + + Sbjct: 127 P-----HIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKLQQAMIYPIMLTIV 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML--IGIMVMRLM 182 + + V G + + +AA+ + G+ V+ + Sbjct: 182 AIGVVSVLLAAVVPKVVGQFEHMGAELPATTRFLIAASDFVQHYGLFVILAI 233 >gi|86360589|ref|YP_472477.1| putative tadC pilus assembly protein [Rhizobium etli CFN 42] gi|86284691|gb|ABC93750.1| putative tadC pilus assembly protein [Rhizobium etli CFN 42] Length = 314 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 70/165 (42%), Gaps = 4/165 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS---EFRRVIE 57 + + ++ FP+ +D+++ + AG+ + A + + D + ++ Sbjct: 149 IDRRGAAKEREYRRLFPDFMDMLIVCLDAGMSIEAAANRVAREFVDKQQDFGLHLSIMML 208 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G L E+++ + + + E S + +LG ++++ L S +RD + ++A Sbjct: 209 EVRGGRRLREALANLATRLRIDEARALSVLFRQSEELGTSVTQTLRVYSNEMRDLRVVRA 268 Query: 118 KVQALSMEAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRG 161 + +A ++ K + L P + ++ +++L+ G Sbjct: 269 EEKANALPVKMLLPLGAFLFPVSLLIVLVPIIMRVVSLLVGMKPG 313 >gi|152986066|ref|YP_001347407.1| general secretion pathway protein F [Pseudomonas aeruginosa PA7] gi|150961224|gb|ABR83249.1| general secretion pathway protein F [Pseudomonas aeruginosa PA7] Length = 405 Score = 59.4 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 53/158 (33%), Gaps = 9/158 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + V+A LP+ +A+ +S ++S V G SL+ S+ Sbjct: 66 RDLALVTRQLATLVQAALPIEEALRAAAAQSTSQRIQSMLLAVRAKVLEGHSLAGSLREF 125 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P + G+L L L+ R+ + K+Q + + Sbjct: 126 PSAFP-----ELYRATVAAGEHAGHLGPVLEQLADYTEQRQQSRQKIQLALLYPV---IL 177 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + + V L+ + P + V I+ + LL Sbjct: 178 MVASLAIVGFLLGYVVPDVVRVFIDSGQTLPLLTRVLI 215 Score = 40.5 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 47/130 (36%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + R+G+P+ +A+A+ ++ + E + + G SL+ S+ ++ P Sbjct: 274 FASTLAILTRSGVPLVEALAIAAEVIANRIIRNEVVKAAQKVREGASLTRSLEATGQFPP 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L + LA +R + + + E ++ + Sbjct: 334 M------MLHMIASGERSGELDQMLARTARNQENDLAAQIGLMVGLFEPFMLIFMGAVVL 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 VIVLAILLPI 397 >gi|84393982|ref|ZP_00992721.1| type IV pilin biogenesis protein PilC [Vibrio splendidus 12B01] gi|84375376|gb|EAP92284.1| type IV pilin biogenesis protein PilC [Vibrio splendidus 12B01] Length = 409 Score = 59.4 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 52/148 (35%), Gaps = 6/148 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D + + G+P+ A+ ++ ++S + + G +S+++ Sbjct: 69 KDITILTRQLATMLATGVPIVQAIKLVSDNHRKAEMKSILSHICKGVEAGTPISKAMRTA 128 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R+ T + +L GNL++ L+ + +K+KV + + Sbjct: 129 SRH-----FDDLYTDLVATGELSGNLAQVFERLATYREKSEQLKSKVIKALIYPAMVVAV 183 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR 160 ++ + + T+V + D Sbjct: 184 ALTVSYLMLTMVIPEFESMFSGFGADLP 211 Score = 35.5 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 12/131 (9%), Positives = 36/131 (27%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + S +G+P+ ++ + + V G+ + ++ Sbjct: 278 FSRTLSTSFSSGIPILTSLKTTAKTAGNLHYESAIIEVHRETAAGMPMYIAMRN------ 331 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + GNL + L ++ I + +E ++ + Sbjct: 332 TNAFPEMVLQMVMIGEESGNLDDMLNKVASIYEFEVDNTVDNLGKILEPLIIVFLGTVVG 391 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 392 GLVVAMYLPIF 402 >gi|281180001|dbj|BAI56331.1| putative type II secretion protein [Escherichia coli SE15] Length = 407 Score = 59.4 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + ML+ ++ G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDTLQASGVYW 229 >gi|255514158|gb|EET90420.1| type II secretion system protein [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 365 Score = 59.4 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 67/171 (39%), Gaps = 2/171 (1%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 K D A ++ S+R+G+P+ +A+ I EF +++E LG+ L E+I Sbjct: 186 KKVERDILFAARDMIISLRSGMPLFNAIVSIS-TGYADASKEFAKIVERVQLGMPLEEAI 244 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + + SV + G ++ AL + L + ++ + + A A Sbjct: 245 DQTIADTKSDSFRRIMLQASVSIKAGADIVSALQTVIDQLSQERYIELRRYGQRLNAIAM 304 Query: 130 AWIIGSLPFC-VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +++ + + V ++ + P + V F+ + ++M Sbjct: 305 FYMLFGVILPSMGIAVVTILTTFIALFTVTPILLYAVLVGIGFLQVVFLIM 355 >gi|296133255|ref|YP_003640502.1| Type II secretion system F domain protein [Thermincola sp. JR] gi|296031833|gb|ADG82601.1| Type II secretion system F domain protein [Thermincola potens JR] Length = 404 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 23/169 (13%), Positives = 58/169 (34%), Gaps = 6/169 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISR 71 + D + AG+PV + ++ Q ++P+ E V+ G +LS++++ Sbjct: 64 MKDLALFCRQFSTMLNAGIPVMHGLGILTRQMANPLLREATEEVVRDLERGRTLSDAMAM 123 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + +LGG L + L+ + +++KV + + Sbjct: 124 HPKVFP-----ALMVNMVEAGELGGILDQVFERLAAYYQREYELRSKVISALIYPAVVCL 178 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + + V G + +A + + ++ Sbjct: 179 VAMLVVGILIVFVLPKFAGLFADYGAILPLPTRMLMAISNSVQNYLLFW 227 Score = 35.5 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 12/130 (9%), Positives = 37/130 (28%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+PV A+ ++ + + ++L E S Sbjct: 273 FARTLSSLLASGVPVLQAMEMVKKLMDNHYLKQGIA-----GAQVALREGKSMWEPLQHA 327 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G + + L ++ + +E + + F Sbjct: 328 RVFDPMVPQMIAVGEETGAVDKMLEKIANVYDGEVEQTVNRLTSLIEPVIILVLALVVGF 387 Query: 139 CVSTLVYFTS 148 V +++ Sbjct: 388 IVISVMLPMF 397 >gi|313793203|gb|EFS41270.1| type II secretion system F domain protein [Propionibacterium acnes HL110PA1] gi|313802708|gb|EFS43926.1| type II secretion system F domain protein [Propionibacterium acnes HL110PA2] gi|314964615|gb|EFT08715.1| type II secretion system F domain protein [Propionibacterium acnes HL082PA1] gi|315078730|gb|EFT50756.1| type II secretion system F domain protein [Propionibacterium acnes HL053PA2] gi|327457152|gb|EGF03807.1| type II secretion system F domain protein [Propionibacterium acnes HL092PA1] Length = 249 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 5/148 (3%) Query: 7 KRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +R + P AL ++ ++ AGLP+ AV + P + RR+ + G+ Sbjct: 101 RRMEQHRAAQLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVPD 160 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S + + + ++ + +S G +SE L+ + L+ K + +A Sbjct: 161 SRAWNDLA---SVEVWRDPAQDVSRAVDSGEGISELLSAHAAQLQVAAAEKTEKKARKAG 217 Query: 126 AK-ASAWIIGSLPFCVSTLVYFTSPGYM 152 + LP + V G + Sbjct: 218 VDAIGPLVCCHLPAFLLVGVVPIIAGMV 245 >gi|294496203|ref|YP_003542696.1| type II secretion system F domain protein [Methanohalophilus mahii DSM 5219] gi|292667202|gb|ADE37051.1| Type II secretion system F domain protein [Methanohalophilus mahii DSM 5219] Length = 641 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 56/162 (34%), Gaps = 1/162 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 + ++ +K + P L + AG+ +S A+ ++ + E +++ G Sbjct: 422 IKRRWVSKVESEMPEFLKKLASINEAGIRLSSAITLVSRSKIGVLNIEIKKMASHLSWGG 481 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QAL 122 +L E + + + + S T I S+ ++ L + + +K + + Sbjct: 482 NLEEVLKKFEYRVRTEFNSRIITFIIKASESTSDVISVLNIAASEAEMQSQLKRERSAEM 541 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 ++ F V L + P + + G L Sbjct: 542 TVYVFIVYVAFLVFLFIVYVLAAYFLPAVPSSAADAVAGMPL 583 >gi|262170629|ref|ZP_06038307.1| type 4 fimbrial assembly protein PilC [Vibrio mimicus MB-451] gi|261891705|gb|EEY37691.1| type 4 fimbrial assembly protein PilC [Vibrio mimicus MB-451] Length = 408 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 23/184 (12%), Positives = 58/184 (31%), Gaps = 21/184 (11%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D + + G+P+ A+ ++ ++S ++ + G LS+++ Sbjct: 68 KDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKGVEAGTPLSKAMRTA 127 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + ++ GNL E L+ + ++AKV + + Sbjct: 128 STH-----FDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLV 182 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRG---------------HMLLGVAAAFMLIGIM 177 + + + T+V + + VA M++G+ Sbjct: 183 ALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFVAIVAMVLGLK 242 Query: 178 VMRL 181 +R Sbjct: 243 ALRK 246 Score = 36.3 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 13/131 (9%), Positives = 36/131 (27%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + S AG+P+ ++ S + V G+ + ++ Sbjct: 277 FSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAAGMPMYIAMRN------ 330 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + + G L + L ++ I + +E ++ + Sbjct: 331 TEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVG 390 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 391 GLVVAMYLPIF 401 >gi|195952902|ref|YP_002121192.1| type II secretion system protein [Hydrogenobaculum sp. Y04AAS1] gi|195932514|gb|ACG57214.1| type II secretion system protein [Hydrogenobaculum sp. Y04AAS1] Length = 402 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 15/159 (9%), Positives = 37/159 (23%), Gaps = 4/159 (2%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 + L + ++ G+ V A+ + Q + E + Sbjct: 56 KKVKEKELSLVLRQVGFLIQVGISVPQALEMAAKQIDNKYFQETLLEVAKDVS----EGV 111 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + + G L +L S +K K+++ S Sbjct: 112 TVGQAMQKKKNVFPPLLISLVMTGEETGQLDRSLILASEYYEKLAKIKGKIKSASFYPSF 171 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 I + + + L+ + Sbjct: 172 VLIIATIITTGIIYFLVPIFASIYKGFGASLPLPTLMLL 210 >gi|74310725|ref|YP_309144.1| type IV pilin biogenesis protein [Shigella sonnei Ss046] gi|73854202|gb|AAZ86909.1| putative integral membrane protein [Shigella sonnei Ss046] gi|323165987|gb|EFZ51767.1| bacterial type II secretion system F domain protein [Shigella sonnei 53G] Length = 400 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 21/182 (11%), Positives = 54/182 (29%), Gaps = 22/182 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLM 235 Query: 180 RL 181 R Sbjct: 236 RR 237 >gi|293412337|ref|ZP_06655060.1| general secretion pathway protein F [Escherichia coli B354] gi|291469108|gb|EFF11599.1| general secretion pathway protein F [Escherichia coli B354] Length = 407 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + ML+ ++ G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDTLQTSGVYW 229 >gi|229512662|ref|ZP_04402131.1| MSHA biogenesis protein MshG [Vibrio cholerae TMA 21] gi|229350339|gb|EEO15290.1| MSHA biogenesis protein MshG [Vibrio cholerae TMA 21] Length = 408 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 16/165 (9%), Positives = 43/165 (26%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72 + + +AG+P+ ++ + + V G +LS Sbjct: 67 EVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS-----A 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + S + + G L +AL L+ + +++ Sbjct: 122 SMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITF 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + F ++ V + D + + + + Sbjct: 182 VLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYW 226 Score = 41.3 bits (95), Expect = 0.062, Method: Composition-based stats. Identities = 10/135 (7%), Positives = 35/135 (25%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + AG+P++ ++A+ + + + + ++ Sbjct: 269 RAQLSRFARTFSLMLSAGVPLNQSLALSAEAIDNKFLEQRIL-----EMKSQIESGVAVS 323 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G + E L +S + K +E ++ Sbjct: 324 ATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLVFV 383 Query: 133 IGSLPFCVSTLVYFT 147 + + Sbjct: 384 AAMVLVLALGIFLPM 398 >gi|88799609|ref|ZP_01115185.1| Type II secretory pathway, component PulF [Reinekea sp. MED297] gi|88777694|gb|EAR08893.1| Type II secretory pathway, component PulF [Reinekea sp. MED297] Length = 410 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 55/175 (31%), Gaps = 6/175 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLG 62 I R +DD + R+G+P+ A+ + + S + R V + G Sbjct: 61 RIFARKRVNIDDLIMFSRQMYALTRSGIPLIRAINGLADATRSPVLSEVLREVTRSLTQG 120 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +L+ S R + + G L A L L K+ + K+ + Sbjct: 121 TNLANSFRAHPRVFG-----DLFVAMVRMGESTGRLDSAFKQLIDHLELEKDTRKKIASA 175 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + I F V+ V + L D ++ + + ++ Sbjct: 176 TRYPIIVTVFIFVALFVVNLWVVPEFSNIFSKLGADLPLPTVILITTSNFMLRFW 230 Score = 34.3 bits (77), Expect = 7.0, Method: Composition-based stats. Identities = 14/133 (10%), Positives = 37/133 (27%), Gaps = 5/133 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + AG+P+ A+ V + + ++ + S + Sbjct: 275 ALGRFARPFAMMLDAGVPLLQALTVSSRTVGNAYIGKGIE-----NMLHGIERGESLLST 329 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + GN+S+ L +++ K A S+E ++ Sbjct: 330 ASASGMFNPLILQMIAVGEETGNVSDLLVDIADFYDQEVEYDLKRLAESLEPILLIFMGL 389 Query: 135 SLPFCVSTLVYFT 147 + + Sbjct: 390 MVLVLALGVFLPM 402 >gi|332143349|ref|YP_004429087.1| general secretion pathway protein F [Alteromonas macleodii str. 'Deep ecotype'] gi|327553371|gb|AEB00090.1| general secretion pathway protein F [Alteromonas macleodii str. 'Deep ecotype'] Length = 408 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 21/167 (12%), Positives = 54/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + V + LPV +A+ + Q ++ V G L++++ + Sbjct: 69 DLALLTRQMATLVESALPVEEALLAVAEQCEKPRQKNMMMAVRSKVVEGHGLADALGQFP 128 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G+L L L+ R+ ++++ + + Sbjct: 129 -----SVFDELYRAMVAAGEKSGHLDTVLNRLADYTERRQQTRSQITQAMIYPSLMLFFA 183 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA--FMLIGIMV 178 + + T+V G + + D G ++ + G+ + Sbjct: 184 MGIVLLLLTVVVPKIVGQFDHMGQDLPGITQFLISVSTWLQNYGLFM 230 >gi|239934068|ref|ZP_04691021.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672] Length = 319 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 63/174 (36%), Gaps = 3/174 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + +R G+ + A+ + D + + + + LG E++ Sbjct: 108 EALSEWTQRLAGLLRLGMGLEQAMITSRKGAPDALAEQITGLSDRLRLGWRPEEALRAFA 167 Query: 74 RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G L++AL +L+ +R+ K ++A + + + Sbjct: 168 DELDDVTADKVTAALILSVNDRGPGLAQALEDLAGTVREEVAKKRGIEADRAKPRTTVRW 227 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + + V F P Y + G ++LG A + + +MR + F Sbjct: 228 MTFITVGVVVA-GFFVPSYTAP-YSTLLGQLVLGFLTAGFVATLALMRQLGAFR 279 >gi|168820862|ref|ZP_02832862.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205342429|gb|EDZ29193.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320084388|emb|CBY94181.1| General secretion pathway protein F Cholera toxin secretion protein epsF [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 400 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 23/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAQQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + +L G L++ L+R + ++ + V+ Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLADCCFELARQQKAQRQITVSVKKALRYPA---I 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183 I+ V +++F P + + + LL + G L++ Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGWLIL 221 >gi|323978965|gb|EGB74045.1| general secretion pathway protein F [Escherichia coli TW10509] Length = 407 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + L+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRALIAMSDALQTSGVYW 229 >gi|298345274|ref|YP_003717961.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063] gi|298235335|gb|ADI66467.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063] Length = 303 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 19/146 (13%), Positives = 52/146 (35%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R + P+ ++++ +V AG P+ A+ + + +D E +++ Sbjct: 150 LTGAARRRQLSLNQELPDVIELLALAVGAGEPLYGALHRVSARCTDVAGQELEKILAAAD 209 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ S++ + ++ I + G L+ L + R + + Sbjct: 210 NGDSLAPSLTAARARNDSEILAHLIDAIVSALERGSPLAGVLRSQVADSRAVARTQLLTE 269 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146 E ++ + + Sbjct: 270 GGKKEVLMMVPVVFLILPLTVVFALY 295 >gi|153833992|ref|ZP_01986659.1| msha biogenesis protein mshg [Vibrio harveyi HY01] gi|148869636|gb|EDL68622.1| msha biogenesis protein mshg [Vibrio harveyi HY01] Length = 407 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 20/160 (12%), Positives = 48/160 (30%), Gaps = 6/160 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + +AG+P+ ++ ++ + E V+ G LS + Sbjct: 71 FSRQLFSLTKAGVPLLRSMRGLLQNCENKQLKEALEEVVAELSNGRGLSSA-----MQPH 125 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + S + ++ G L +AL L+ + +++A I Sbjct: 126 TKVFSPLFVSMINVAENTGRLDQALLQLANYYEQELETRKRIKAAMRYPTFVIVFITIAM 185 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 F ++ LV + + +A + + Sbjct: 186 FILNILVIPEFASMFTRFGVELPLPTRILIATSNFFVNYW 225 Score = 38.2 bits (87), Expect = 0.59, Method: Composition-based stats. Identities = 11/135 (8%), Positives = 37/135 (27%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 +++G+P++ ++A+ + + ++ + Sbjct: 268 RAQLSRFARTFSLMLKSGVPLNQSLALAGEALGNKFLE-----NRILEMKSAIEAGSTIS 322 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 V + + + + + G + E L +S + K +E + Sbjct: 323 VTAINSKIFTPLVIQMIAVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPLLLVIV 382 Query: 133 IGSLPFCVSTLVYFT 147 G + + Sbjct: 383 AGMVMVLALGIFLPM 397 >gi|297616457|ref|YP_003701616.1| type II secretion system F domain protein [Syntrophothermus lipocalidus DSM 12680] gi|297144294|gb|ADI01051.1| Type II secretion system F domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 403 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 23/165 (13%), Positives = 56/165 (33%), Gaps = 6/165 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 + +++GLP+ + V+ Q+ + +R ++ + GL L E+++ Sbjct: 65 EIVLFTRQFATMIKSGLPLLHCLQVLQLQARNRHLRQATTGIMRSVRRGLPLWEALAEYP 124 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + + GG L E L L+ L +K +++ + A + Sbjct: 125 -----SIFSDLYVQMVKAGETGGRLDEVLERLAAHLEKEHEVKQRIKNALIYPCTVAILT 179 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 ++ +++ V N L + ++ Sbjct: 180 LAVVAFLTSFVVPAFASVFNGAGVSLPTATRLLLGFTRLIRNHFW 224 >gi|33596530|ref|NP_884173.1| hypothetical protein BPP1912 [Bordetella parapertussis 12822] gi|33566299|emb|CAE37212.1| putative membrane protein [Bordetella parapertussis] Length = 298 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 49/135 (36%), Gaps = 1/135 (0%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISR 71 + P LD++ AGL + A+ P+R + + G+ +++ Sbjct: 153 ARELPFILDLMTLCAEAGLGMHGALQQAASHGPPGPLRELLVQALCDMRAGMPRRQAMQA 212 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + V + ++ G +L L L+ R ++ +A+ A+ K Sbjct: 213 LAARADSPPVRAWVGALAHADAQGMSLGPMLRGLATRYRAERHQRAERLAMEAPVKMLLP 272 Query: 132 IIGSLPFCVSTLVYF 146 +I + C ++ F Sbjct: 273 LIACIFPCTFIVLAF 287 >gi|313903191|ref|ZP_07836584.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM 13965] gi|313466502|gb|EFR62023.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM 13965] Length = 408 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 49/137 (35%), Gaps = 5/137 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + +RAGLP+S + +V Q +R ++ G L E+++ Sbjct: 72 FFRQLATMIRAGLPLSACMESLVEQGRGRLRQVAAGILRDVQSGRLLHEAMAHA-----R 126 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + ++L G L E LA L+ R ++ KV++ + ++ Sbjct: 127 GAFDDVHVAMVRAAELSGRLDEVLARLAADEDRRLKVEGKVRSALAYPAFVLLVAAAVVA 186 Query: 139 CVSTLVYFTSPGYMNVL 155 + T + T G Sbjct: 187 VMVTFIVPTFVGIFQQF 203 Score = 36.6 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + VR+G P+ +A+ + + V + + + S Sbjct: 273 VTRGLASMVRSGFPLLEALDAAGRLAGNQVFR-----VALEETRKGVERGASLSAALRVS 327 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L E L + + + + + +E + G + F Sbjct: 328 GIFPALVVDLVAIGERSGALDELLDRAAALAEEETDNRLAALTSLLEPVLVVLMGGVVGF 387 Query: 139 CVSTLVYFTS 148 ++ Sbjct: 388 IALSVFLPMF 397 >gi|301326851|ref|ZP_07220151.1| general secretion pathway protein F [Escherichia coli MS 78-1] gi|300846526|gb|EFK74286.1| general secretion pathway protein F [Escherichia coli MS 78-1] Length = 407 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + ML+ ++ G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDTLQTSGVYW 229 >gi|327334808|gb|EGE76519.1| hypothetical protein HMPREF9344_00673 [Propionibacterium acnes HL097PA1] Length = 256 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 59/171 (34%), Gaps = 5/171 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + A + V G S A+ + + Q +G S+S+++ Sbjct: 83 REVARATRSLAGRVSVGEIPSVALEHVADDVE-----VLAQARRAQAVGGSVSDALIATS 137 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + + + + G L+ A +++ R ++A + + A+AS I+ Sbjct: 138 RQPGMAGLVPLAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIM 197 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 G LP + + L G L + +G++ + + Sbjct: 198 GLLPLVGLLMGHVVGAHPTVFLTTTWLGRACLLGSTLLACVGVLWSESLAD 248 >gi|317121506|ref|YP_004101509.1| type II secretion system F domain [Thermaerobacter marianensis DSM 12885] gi|315591486|gb|ADU50782.1| Type II secretion system F domain [Thermaerobacter marianensis DSM 12885] Length = 408 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 5/137 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + +RAGLP+S + +V Q +R ++ G L E+++ Sbjct: 72 FFRQLATMIRAGLPLSACMESLVEQGRGRLRQVAAGILRDVQSGRLLHEAMAHA-----R 126 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + ++L G L E LA L+ R ++ K+++ + ++ Sbjct: 127 GAFNDVHVAMVRAAELSGRLDEVLARLAADEDRRLKVEGKIRSALAYPAFVLLVAAAVVA 186 Query: 139 CVSTLVYFTSPGYMNVL 155 + T + T G Sbjct: 187 VMVTFIVPTFVGIFQQF 203 Score = 37.0 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 39/130 (30%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + VR+G P+ +A+ + + V + + + + S Sbjct: 273 VTRGLASMVRSGFPLLEALDAAGRLAGNQVFR-----VALEETRKGVEQGASLSAALRVS 327 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L E L + ++ + + + + +E + G + F Sbjct: 328 GVFPALVVDLVAIGERSGALDELLDRAAALVEEETDNRLAALSSLLEPVLVVLMGGVVGF 387 Query: 139 CVSTLVYFTS 148 ++ Sbjct: 388 IALSVFLPMF 397 >gi|292490576|ref|YP_003526015.1| type II secretion system protein [Nitrosococcus halophilus Nc4] gi|291579171|gb|ADE13628.1| type II secretion system protein [Nitrosococcus halophilus Nc4] Length = 410 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 51/157 (32%), Gaps = 6/157 (3%) Query: 23 IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +RAGLP+ A + ++ PVR R+ E G SL+E++ Sbjct: 80 LATLLRAGLPLDRAFSTLIEIAEEGPVREILTRLQEQVRGGASLAEAMESQGET-----F 134 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S + + GG L L L+ + K +K V + + + G + Sbjct: 135 SPLYISMIRAGEAGGALDVILGRLADFMERSKALKNAVTSALIYPAILVGVAGLSVIILL 194 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 V + +AA +L Sbjct: 195 AFVVPQFQQLFEDAGKALPLATQIVIAAGDLLQNYWW 231 >gi|253701603|ref|YP_003022792.1| type II secretion system protein [Geobacter sp. M21] gi|251776453|gb|ACT19034.1| type II secretion system protein [Geobacter sp. M21] Length = 401 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 52/163 (31%), Gaps = 8/163 (4%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + ++ ++AGLP+ A+ I+ + + E GL+LS Sbjct: 57 RKKIGNKELLLFNQELLVLLKAGLPILQALDTILESGGGKLNEILSAIREDVKGGLALSA 116 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + + R P + G+L + + L+ + + K+ + Sbjct: 117 AFEKFPRVFPH-----LYIASVRAGERTGDLPQTIRRYIAFLKRTEGFRGKIIGALIYPV 171 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 +I +S L+ + P + + + + Sbjct: 172 ---ILIAVAAVAISLLLIYVVPTFSTIYADSGAALPIPTQILI 211 Score = 38.2 bits (87), Expect = 0.53, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 46/135 (34%), Gaps = 7/135 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI-ETQHLGLSLSESISRMV 73 + + +G+P+ +A+ + VG ++ V + G LS ++ M Sbjct: 266 ALAGFTRTLATVLGSGIPIVEALRMSVGTLNNKVLERGLLLAVHRVEEGSKLSTALEGMK 325 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 P + + + G+L E L+++S + V S+E + Sbjct: 326 LMPP------LALRMLTVGETTGSLEEMLSDISDYFEEEIERDLHVLTTSIEPAIMVVMG 379 Query: 134 GSLPFCVSTLVYFTS 148 + + T+ Sbjct: 380 VVIGVIIVTMYLPIF 394 >gi|119943892|ref|YP_941572.1| general secretion pathway protein F [Psychromonas ingrahamii 37] gi|119862496|gb|ABM01973.1| general secretion pathway protein F [Psychromonas ingrahamii 37] Length = 396 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 21/188 (11%), Positives = 50/188 (26%), Gaps = 16/188 (8%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 D + V + +P+ + + + Q P + G L + Sbjct: 51 KKIKTADLALITRQLSTLVASAIPLEECLHAVAEQCDKPNIKGMIVSVR----GGVLEGN 106 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + G+L + L L+ R+ MK+K+ + Sbjct: 107 SLADSMRAFPLIFDNLFCSMVAAGEKSGHLDQVLDRLADYAEQREEMKSKMTQALIYPLI 166 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA------------AAFMLIGI 176 + S+ + T V G + D +A + + Sbjct: 167 LTLVAISVVAILLTSVVPQVVGQFEHMSADLPASTKFLIAASDGLNSYGLIIVILIFASL 226 Query: 177 MVMRLMIN 184 + + ++ Sbjct: 227 FIFKRLLR 234 >gi|307545560|ref|YP_003898039.1| type IV pilus assembly protein PilC [Halomonas elongata DSM 2581] gi|307217584|emb|CBV42854.1| K02653 type IV pilus assembly protein PilC [Halomonas elongata DSM 2581] Length = 408 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 16/164 (9%), Positives = 42/164 (25%), Gaps = 4/164 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D + +RAG+PV + V+ P R++ + Sbjct: 69 RDITLFARQMATLLRAGIPVLQGLGVVAKGVEKPAM----RLLVEALSKEVTEGASVAEA 124 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G L L ++ + ++ +V+ Sbjct: 125 LGRHPRHFGGLFIHLVAAGEQSGTLERMLDRVATHKEKIERLQGRVRRALWYPAVVLVTG 184 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++ + V G + L ++ + + Sbjct: 185 VAVAALLLVKVVPRFEGLFRDFGAELPALTRLTLSLSQAVQHYW 228 >gi|297520181|ref|ZP_06938567.1| general secretory pathway component, cryptic [Escherichia coli OP50] Length = 202 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 53/155 (34%), Gaps = 10/155 (6%) Query: 5 IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62 +K R + + + A LP+ +++AVI QSS+ + +V G Sbjct: 49 VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLGDVLNQVRSAILEG 108 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS+++ + + G L+ L L+ +R+ +++K+ Sbjct: 109 HPLSDALQHFPTL-----FDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQS 163 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + + V L+ P ++ Sbjct: 164 LIYP---CMLTTVAIGVVIILLTAVVPKITEQFVH 195 >gi|229520024|ref|ZP_04409453.1| MSHA biogenesis protein MshG [Vibrio cholerae TM 11079-80] gi|229342973|gb|EEO07962.1| MSHA biogenesis protein MshG [Vibrio cholerae TM 11079-80] Length = 407 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 16/165 (9%), Positives = 43/165 (26%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72 + + +AG+P+ ++ + + V G +LS Sbjct: 67 EVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS-----A 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + S + + G L +AL L+ + +++ Sbjct: 122 SMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITF 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + F ++ V + D + + + + Sbjct: 182 VLLAMFVLNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYW 226 Score = 41.3 bits (95), Expect = 0.069, Method: Composition-based stats. Identities = 10/135 (7%), Positives = 36/135 (26%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + AG+P++ ++A+ + + + + ++ Sbjct: 269 RAQLSRFARTFSLMLSAGVPLNQSLALSAEAIDNKFLEQRIL-----EMKSQIESGVAVS 323 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + + G + E L +S + K +E ++ Sbjct: 324 ATAINAKIFTPLVIQMMSVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLLFV 383 Query: 133 IGSLPFCVSTLVYFT 147 + + Sbjct: 384 AAMVLVLALGIFLPM 398 >gi|229525100|ref|ZP_04414505.1| MSHA biogenesis protein MshG [Vibrio cholerae bv. albensis VL426] gi|229338681|gb|EEO03698.1| MSHA biogenesis protein MshG [Vibrio cholerae bv. albensis VL426] Length = 407 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 16/165 (9%), Positives = 43/165 (26%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72 + + +AG+P+ ++ + + V G +LS Sbjct: 67 EVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS-----A 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + S + + G L +AL L+ + +++ Sbjct: 122 SMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITF 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + F ++ V + D + + + + Sbjct: 182 VLLAMFVLNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYW 226 Score = 41.3 bits (95), Expect = 0.069, Method: Composition-based stats. Identities = 10/135 (7%), Positives = 36/135 (26%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + AG+P++ ++A+ + + + + ++ Sbjct: 269 RAQLSRFARTFSLMLSAGVPLNQSLALSAEAIDNKFLEQRIL-----EMKSQIESGVAVS 323 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + + G + E L +S + K +E ++ Sbjct: 324 ATAINAKIFTPLVIQMMSVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLLFV 383 Query: 133 IGSLPFCVSTLVYFT 147 + + Sbjct: 384 AAMVLVLALGIFLPM 398 >gi|300821891|ref|ZP_07102035.1| type II secretion system F domain protein [Escherichia coli MS 119-7] gi|300525491|gb|EFK46560.1| type II secretion system F domain protein [Escherichia coli MS 119-7] Length = 400 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 21/182 (11%), Positives = 54/182 (29%), Gaps = 22/182 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLM 235 Query: 180 RL 181 R Sbjct: 236 RR 237 >gi|88704168|ref|ZP_01101882.1| general secretory pathway protein F [Congregibacter litoralis KT71] gi|88701219|gb|EAQ98324.1| general secretory pathway protein F [Congregibacter litoralis KT71] Length = 393 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 55/162 (33%), Gaps = 6/162 (3%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +RAGLP+ ++ V++ +S + + V+++ G +LS ++ Sbjct: 63 LAVLLRAGLPLDRSLKVLIEMASLPSMGALLSDVLKSVKDGKALSVALEPYADLFG---- 118 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F + + G +S L L L + K + V + + + + Sbjct: 119 -RFYLSMLRSGEASGEMSAVLDRLVAHLEESKATRDSVVSALIYPAILLVVAVLSIVVML 177 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 V N + + + + +A + + + Sbjct: 178 AFVVPQFESLFNDMGDSLPTLTRVVINSADFVTAWFWLLAIA 219 >gi|297580544|ref|ZP_06942470.1| MSHA biogenesis protein MshG [Vibrio cholerae RC385] gi|297534960|gb|EFH73795.1| MSHA biogenesis protein MshG [Vibrio cholerae RC385] Length = 407 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 16/165 (9%), Positives = 43/165 (26%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72 + + +AG+P+ ++ + + V G +LS Sbjct: 67 EVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS-----A 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + S + + G L +AL L+ + +++ Sbjct: 122 SMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITF 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + F ++ V + D + + + + Sbjct: 182 VLLAMFVLNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYW 226 Score = 41.3 bits (95), Expect = 0.063, Method: Composition-based stats. Identities = 10/135 (7%), Positives = 36/135 (26%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + AG+P++ ++A+ + + + + ++ Sbjct: 269 RAQLSRFARTFSLMLSAGVPLNQSLALSAEAIDNKFLEQRIL-----EMKSQIESGVAVS 323 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + + G + E L +S + K +E ++ Sbjct: 324 ATAINAKIFTPLVIQMMSVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLVFV 383 Query: 133 IGSLPFCVSTLVYFT 147 + + Sbjct: 384 AAMVLVLALGIFLPM 398 >gi|293417980|ref|ZP_06660602.1| transporter HofC [Escherichia coli B185] gi|291430698|gb|EFF03696.1| transporter HofC [Escherichia coli B185] Length = 400 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 21/182 (11%), Positives = 54/182 (29%), Gaps = 22/182 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLM 235 Query: 180 RL 181 R Sbjct: 236 RR 237 >gi|262404737|ref|ZP_06081292.1| type 4 fimbrial assembly protein PilC [Vibrio sp. RC586] gi|262349769|gb|EEY98907.1| type 4 fimbrial assembly protein PilC [Vibrio sp. RC586] Length = 408 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 49/149 (32%), Gaps = 6/149 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 D + + G+P+ A+ ++ ++S ++ ++ G LS+++ Sbjct: 67 TKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRT 126 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + ++ GNL E L+ + ++AKV + Sbjct: 127 ASAH-----FDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVL 181 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 + + + + T+V + Sbjct: 182 VALGVSYLMLTMVIPEFESMFKGFGAELP 210 Score = 36.3 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 13/131 (9%), Positives = 36/131 (27%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + S AG+P+ ++ S + V G+ + ++ Sbjct: 277 FSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVHRDTAAGMPMYIAMRN------ 330 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + + G L + L ++ I + +E ++ + Sbjct: 331 TEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGIVVG 390 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 391 GLVVAMYLPIF 401 >gi|262273166|ref|ZP_06050982.1| general secretion pathway protein F/type II secretory pathway component PulF [Grimontia hollisae CIP 101886] gi|262222744|gb|EEY74053.1| general secretion pathway protein F/type II secretory pathway component PulF [Grimontia hollisae CIP 101886] Length = 406 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 19/159 (11%), Positives = 52/159 (32%), Gaps = 9/159 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 ++ + V+A +P+ + + + Q+ +++ V G +LS+S+ Sbjct: 65 TNELALITRQLATLVQAAMPLEECIKAVADQTEKQRLKNMLTGVRARVVEGYTLSDSLGD 124 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + G+L L L+ + +R+ +K K+ + Sbjct: 125 YP-----HVFDQLFRAMVAAGEKSGHLGPVLERLADYVENRQQVKNKLIQAMVYPM---V 176 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + + V+ L+ P + + + Sbjct: 177 LTVAAIGIVAFLLATVVPDIVGQFLQTGAELPNITQVLL 215 >gi|157159575|ref|YP_001456893.1| type IV pilin biogenesis protein [Escherichia coli HS] gi|187732598|ref|YP_001878915.1| type IV pilin biogenesis protein [Shigella boydii CDC 3083-94] gi|193063232|ref|ZP_03044323.1| type IV pilus assembly protein PilC [Escherichia coli E22] gi|193071239|ref|ZP_03052160.1| type IV pilus assembly protein PilC [Escherichia coli E110019] gi|194430297|ref|ZP_03062791.1| type IV pilus assembly protein PilC [Escherichia coli B171] gi|209917297|ref|YP_002291381.1| type IV pilin biogenesis protein [Escherichia coli SE11] gi|218552686|ref|YP_002385599.1| type IV pilin biogenesis protein [Escherichia coli IAI1] gi|218693572|ref|YP_002401239.1| type IV pilin biogenesis protein [Escherichia coli 55989] gi|260842340|ref|YP_003220118.1| assembly protein HofC in type IV pilin biogenesis, transmembrane protein [Escherichia coli O103:H2 str. 12009] gi|260853318|ref|YP_003227209.1| assembly protein HofC in type IV pilin biogenesis, transmembrane protein [Escherichia coli O26:H11 str. 11368] gi|260866257|ref|YP_003232659.1| assembly protein HofC in type IV pilin biogenesis, transmembrane protein [Escherichia coli O111:H- str. 11128] gi|307311445|ref|ZP_07591087.1| Type II secretion system F domain protein [Escherichia coli W] gi|331666341|ref|ZP_08367222.1| protein transport protein HofC [Escherichia coli TA271] gi|331680678|ref|ZP_08381337.1| protein transport protein HofC [Escherichia coli H591] gi|157065255|gb|ABV04510.1| type IV pilus assembly protein PilC [Escherichia coli HS] gi|187429590|gb|ACD08864.1| type IV pilus assembly protein PilC [Shigella boydii CDC 3083-94] gi|192931140|gb|EDV83743.1| type IV pilus assembly protein PilC [Escherichia coli E22] gi|192955449|gb|EDV85931.1| type IV pilus assembly protein PilC [Escherichia coli E110019] gi|194411652|gb|EDX27980.1| type IV pilus assembly protein PilC [Escherichia coli B171] gi|209910556|dbj|BAG75630.1| conserved hypothetical protein [Escherichia coli SE11] gi|218350304|emb|CAU95987.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli 55989] gi|218359454|emb|CAQ96992.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli IAI1] gi|257751967|dbj|BAI23469.1| assembly protein HofC in type IV pilin biogenesis, transmembrane protein [Escherichia coli O26:H11 str. 11368] gi|257757487|dbj|BAI28984.1| assembly protein HofC in type IV pilin biogenesis, transmembrane protein [Escherichia coli O103:H2 str. 12009] gi|257762613|dbj|BAI34108.1| assembly protein HofC in type IV pilin biogenesis, transmembrane protein [Escherichia coli O111:H- str. 11128] gi|306908424|gb|EFN38922.1| Type II secretion system F domain protein [Escherichia coli W] gi|320183609|gb|EFW58452.1| Type IV fimbrial assembly protein PilC [Shigella flexneri CDC 796-83] gi|323157827|gb|EFZ43930.1| bacterial type II secretion system F domain protein [Escherichia coli EPECa14] gi|323160098|gb|EFZ46059.1| bacterial type II secretion system protein F domain protein [Escherichia coli E128010] gi|323176412|gb|EFZ62004.1| bacterial type II secretion system protein F domain protein [Escherichia coli 1180] gi|323181801|gb|EFZ67214.1| bacterial type II secretion system protein F domain protein [Escherichia coli 1357] gi|323380115|gb|ADX52383.1| Type II secretion system F domain protein [Escherichia coli KO11] gi|324017735|gb|EGB86954.1| type II secretion system F domain protein [Escherichia coli MS 117-3] gi|324118454|gb|EGC12348.1| type II secretion system protein F [Escherichia coli E1167] gi|331066552|gb|EGI38429.1| protein transport protein HofC [Escherichia coli TA271] gi|331072141|gb|EGI43477.1| protein transport protein HofC [Escherichia coli H591] Length = 400 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 21/182 (11%), Positives = 54/182 (29%), Gaps = 22/182 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLM 235 Query: 180 RL 181 R Sbjct: 236 RR 237 >gi|205351483|ref|YP_002225284.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205271264|emb|CAR36052.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326626510|gb|EGE32853.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 400 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + +L G L+E L+R + ++ + V+ Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPA---I 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183 I+ V +++F P + + + LL + G L++ Sbjct: 169 ILTMAALVVFAILHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGWLIL 221 >gi|161612487|ref|YP_001586452.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168234908|ref|ZP_02659966.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194735161|ref|YP_002113159.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|161361851|gb|ABX65619.1| hypothetical protein SPAB_00177 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194710663|gb|ACF89884.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291724|gb|EDY31074.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 400 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAQQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + +L G L+E L+R + ++ + V+ Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPA---I 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183 I+ V +++F P + + + LL + G L++ Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGWLIL 221 >gi|324114989|gb|EGC08954.1| general secretion pathway protein F [Escherichia fergusonii B253] Length = 407 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + L+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRALIAMSDALQTSGVYW 229 >gi|15640433|ref|NP_230060.1| MSHA biogenesis protein MshG [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587605|ref|ZP_01677370.1| MSHA biogenesis protein MshG [Vibrio cholerae 2740-80] gi|121727270|ref|ZP_01680429.1| MSHA biogenesis protein MshG [Vibrio cholerae V52] gi|147674016|ref|YP_001218674.1| MSHA biogenesis protein MshG [Vibrio cholerae O395] gi|153802229|ref|ZP_01956815.1| MSHA biogenesis protein MshG [Vibrio cholerae MZO-3] gi|153818247|ref|ZP_01970914.1| MSHA biogenesis protein MshG [Vibrio cholerae NCTC 8457] gi|153822260|ref|ZP_01974927.1| MSHA biogenesis protein MshG [Vibrio cholerae B33] gi|153825652|ref|ZP_01978319.1| MSHA biogenesis protein MshG [Vibrio cholerae MZO-2] gi|227080617|ref|YP_002809168.1| MSHA biogenesis protein MshG [Vibrio cholerae M66-2] gi|229507046|ref|ZP_04396552.1| MSHA biogenesis protein MshG [Vibrio cholerae BX 330286] gi|229508799|ref|ZP_04398291.1| MSHA biogenesis protein MshG [Vibrio cholerae B33] gi|229519787|ref|ZP_04409230.1| MSHA biogenesis protein MshG [Vibrio cholerae RC9] gi|229530251|ref|ZP_04419639.1| MSHA biogenesis protein MshG [Vibrio cholerae 12129(1)] gi|229606312|ref|YP_002876960.1| MSHA biogenesis protein MshG [Vibrio cholerae MJ-1236] gi|254291311|ref|ZP_04962105.1| MSHA biogenesis protein MshG [Vibrio cholerae AM-19226] gi|254850638|ref|ZP_05239988.1| MSHA biogenesis protein MshG [Vibrio cholerae MO10] gi|255743791|ref|ZP_05417748.1| MSHA biogenesis protein MshG [Vibrio cholera CIRS 101] gi|262153596|ref|ZP_06028724.1| MSHA biogenesis protein MshG [Vibrio cholerae INDRE 91/1] gi|262167630|ref|ZP_06035334.1| MSHA biogenesis protein MshG [Vibrio cholerae RC27] gi|298501061|ref|ZP_07010862.1| MSHA biogenesis protein MshG [Vibrio cholerae MAK 757] gi|9654827|gb|AAF93579.1| MSHA biogenesis protein MshG [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548178|gb|EAX58250.1| MSHA biogenesis protein MshG [Vibrio cholerae 2740-80] gi|121630389|gb|EAX62784.1| MSHA biogenesis protein MshG [Vibrio cholerae V52] gi|124122253|gb|EAY40996.1| MSHA biogenesis protein MshG [Vibrio cholerae MZO-3] gi|126511206|gb|EAZ73800.1| MSHA biogenesis protein MshG [Vibrio cholerae NCTC 8457] gi|126520216|gb|EAZ77439.1| MSHA biogenesis protein MshG [Vibrio cholerae B33] gi|146315899|gb|ABQ20438.1| MSHA biogenesis protein MshG [Vibrio cholerae O395] gi|149740682|gb|EDM54789.1| MSHA biogenesis protein MshG [Vibrio cholerae MZO-2] gi|150422767|gb|EDN14720.1| MSHA biogenesis protein MshG [Vibrio cholerae AM-19226] gi|227008505|gb|ACP04717.1| MSHA biogenesis protein MshG [Vibrio cholerae M66-2] gi|227012261|gb|ACP08471.1| MSHA biogenesis protein MshG [Vibrio cholerae O395] gi|229332024|gb|EEN97512.1| MSHA biogenesis protein MshG [Vibrio cholerae 12129(1)] gi|229344476|gb|EEO09451.1| MSHA biogenesis protein MshG [Vibrio cholerae RC9] gi|229354202|gb|EEO19133.1| MSHA biogenesis protein MshG [Vibrio cholerae B33] gi|229355791|gb|EEO20711.1| MSHA biogenesis protein MshG [Vibrio cholerae BX 330286] gi|229368967|gb|ACQ59390.1| MSHA biogenesis protein MshG [Vibrio cholerae MJ-1236] gi|254846343|gb|EET24757.1| MSHA biogenesis protein MshG [Vibrio cholerae MO10] gi|255738540|gb|EET93928.1| MSHA biogenesis protein MshG [Vibrio cholera CIRS 101] gi|262023966|gb|EEY42663.1| MSHA biogenesis protein MshG [Vibrio cholerae RC27] gi|262030623|gb|EEY49259.1| MSHA biogenesis protein MshG [Vibrio cholerae INDRE 91/1] gi|297540309|gb|EFH76369.1| MSHA biogenesis protein MshG [Vibrio cholerae MAK 757] gi|327483263|gb|AEA77670.1| MSHA biogenesis protein MshG [Vibrio cholerae LMA3894-4] Length = 407 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 16/165 (9%), Positives = 43/165 (26%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72 + + +AG+P+ ++ + + V G +LS Sbjct: 67 EVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS-----A 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + S + + G L +AL L+ + +++ Sbjct: 122 SMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITF 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + F ++ V + D + + + + Sbjct: 182 VLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYW 226 Score = 41.3 bits (95), Expect = 0.064, Method: Composition-based stats. Identities = 10/135 (7%), Positives = 35/135 (25%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + AG+P++ ++A+ + + + + ++ Sbjct: 269 RAQLSRFARTFSLMLSAGVPLNQSLALSAEAIDNKFLEQRIL-----EMKSQIESGVAVS 323 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G + E L +S + K +E ++ Sbjct: 324 ATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLVFV 383 Query: 133 IGSLPFCVSTLVYFT 147 + + Sbjct: 384 AAMVLVLALGIFLPM 398 >gi|309777429|ref|ZP_07672387.1| conserved hypothetical protein [Erysipelotrichaceae bacterium 3_1_53] gi|308914825|gb|EFP60607.1| conserved hypothetical protein [Erysipelotrichaceae bacterium 3_1_53] Length = 201 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 58/152 (38%), Gaps = 1/152 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++KKR + D P+ + I V AG+ + +A A + + E +R +E + Sbjct: 48 ISDVMKKRDMEISRDLPSIISKITLLVNAGMVLREAWAQVAQTGDTTLYKEMQRAVEDMN 107 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKV 119 G+S ++ + +V F + + S+ +L L S+I K + Sbjct: 108 NGMSEVDAYMDFSQRCQSAKVRKFISTVEQNVSKGNKDLVAYLKEQSQIAWTEKKEYVRQ 167 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 Q + +K I + ++ + Sbjct: 168 QGETASSKMLIPIGIMFVGILIMVIVPIFANF 199 >gi|254226013|ref|ZP_04919613.1| MSHA biogenesis protein MshG [Vibrio cholerae V51] gi|125621469|gb|EAZ49803.1| MSHA biogenesis protein MshG [Vibrio cholerae V51] Length = 407 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 16/165 (9%), Positives = 43/165 (26%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72 + + +AG+P+ ++ + + V G +LS Sbjct: 67 EVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS-----A 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + S + + G L +AL L+ + +++ Sbjct: 122 SMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITF 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + F ++ V + D + + + + Sbjct: 182 VLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYW 226 Score = 41.3 bits (95), Expect = 0.065, Method: Composition-based stats. Identities = 10/135 (7%), Positives = 35/135 (25%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + AG+P++ ++A+ + + + + ++ Sbjct: 269 RAQLSRFARTFSLMLSAGVPLNQSLALSAEAIDNKFLEQRIL-----EMKSQIESGVAVS 323 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G + E L +S + K +E ++ Sbjct: 324 ATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLVFV 383 Query: 133 IGSLPFCVSTLVYFT 147 + + Sbjct: 384 AAMVLVLALGIFLPM 398 >gi|288937074|ref|YP_003441133.1| general secretion pathway protein F [Klebsiella variicola At-22] gi|288891783|gb|ADC60101.1| general secretion pathway protein F [Klebsiella variicola At-22] Length = 404 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 17/143 (11%), Positives = 40/143 (27%), Gaps = 7/143 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D + V AG+P+ A+ + Q R + L Sbjct: 65 DLALLTRQLATLVAAGIPLEKALDAVAQQCE----KAPLRTLMAGVRSKVLEGHSLAEAM 120 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + G+L L L+ R+ ++A++ + + Sbjct: 121 RGYPACFDGLFCAMVAAGETSGHLDGVLNRLADYTEQRQQLRARLLQAMIYPI---VLTL 177 Query: 135 SLPFCVSTLVYFTSPGYMNVLIN 157 ++ L+ P + ++ Sbjct: 178 VAISVIAILLSTVVPKVVEQFVH 200 >gi|258620853|ref|ZP_05715887.1| type IV pilin biogenesis protein PilC [Vibrio mimicus VM573] gi|258586241|gb|EEW10956.1| type IV pilin biogenesis protein PilC [Vibrio mimicus VM573] Length = 408 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 18/148 (12%), Positives = 49/148 (33%), Gaps = 6/148 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D + + G+P+ A+ ++ ++S ++ ++ G LS+++ Sbjct: 68 KDITILTRQLATMLTTGVPIVQALKLVGDSHRKAEMKSILAQITKSVEAGTPLSKAMRTA 127 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + ++ GNL E L+ + ++AKV + + Sbjct: 128 SSH-----FDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLV 182 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR 160 + + + T+V + Sbjct: 183 ALGVSYLMLTMVIPEFESMFKGFGAELP 210 Score = 36.3 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 13/131 (9%), Positives = 36/131 (27%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + S AG+P+ ++ S + V G+ + ++ Sbjct: 277 FSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAAGMPMYIAMRN------ 330 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + + G L + L ++ I + +E ++ + Sbjct: 331 TEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVG 390 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 391 GLVVAMYLPIF 401 >gi|258625145|ref|ZP_05720062.1| type IV pilin biogenesis protein PilC [Vibrio mimicus VM603] gi|258582596|gb|EEW07428.1| type IV pilin biogenesis protein PilC [Vibrio mimicus VM603] Length = 408 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 18/148 (12%), Positives = 49/148 (33%), Gaps = 6/148 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D + + G+P+ A+ ++ ++S ++ ++ G LS+++ Sbjct: 68 KDITILTRQLATMLTTGVPIVQALKLVGDSHRKAEMKSILAQITKSVEAGTPLSKAMRTA 127 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + ++ GNL E L+ + ++AKV + + Sbjct: 128 SSH-----FDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLV 182 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR 160 + + + T+V + Sbjct: 183 ALGVSYLMLTMVIPEFESMFKGFGAELP 210 Score = 36.3 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 13/131 (9%), Positives = 36/131 (27%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + S AG+P+ ++ S + V G+ + ++ Sbjct: 277 FSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAAGMPMYIAMRN------ 330 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + + G L + L ++ I + +E ++ + Sbjct: 331 TEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVG 390 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 391 GLVVAMYLPIF 401 >gi|168230423|ref|ZP_02655481.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194468768|ref|ZP_03074752.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194455132|gb|EDX43971.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205334971|gb|EDZ21735.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 400 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAQQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + +L G L+E L+R + ++ + V+ Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPA---I 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183 I+ V +++F P + + + LL + G L++ Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGWLIL 221 >gi|289424514|ref|ZP_06426297.1| conserved hypothetical protein [Propionibacterium acnes SK187] gi|289155211|gb|EFD03893.1| conserved hypothetical protein [Propionibacterium acnes SK187] gi|313765313|gb|EFS36677.1| conserved hypothetical protein [Propionibacterium acnes HL013PA1] gi|313793204|gb|EFS41271.1| conserved hypothetical protein [Propionibacterium acnes HL110PA1] gi|313802707|gb|EFS43925.1| conserved hypothetical protein [Propionibacterium acnes HL110PA2] gi|313814295|gb|EFS52009.1| conserved hypothetical protein [Propionibacterium acnes HL025PA1] gi|313815408|gb|EFS53122.1| conserved hypothetical protein [Propionibacterium acnes HL059PA1] gi|313828806|gb|EFS66520.1| conserved hypothetical protein [Propionibacterium acnes HL063PA2] gi|314916035|gb|EFS79866.1| conserved hypothetical protein [Propionibacterium acnes HL005PA4] gi|314917187|gb|EFS81018.1| conserved hypothetical protein [Propionibacterium acnes HL050PA1] gi|314921686|gb|EFS85517.1| conserved hypothetical protein [Propionibacterium acnes HL050PA3] gi|314930991|gb|EFS94822.1| conserved hypothetical protein [Propionibacterium acnes HL067PA1] gi|314955078|gb|EFS99484.1| conserved hypothetical protein [Propionibacterium acnes HL027PA1] gi|314959118|gb|EFT03220.1| conserved hypothetical protein [Propionibacterium acnes HL002PA1] gi|314964616|gb|EFT08716.1| conserved hypothetical protein [Propionibacterium acnes HL082PA1] gi|314969716|gb|EFT13814.1| conserved hypothetical protein [Propionibacterium acnes HL037PA1] gi|315078729|gb|EFT50755.1| conserved hypothetical protein [Propionibacterium acnes HL053PA2] gi|315099517|gb|EFT71493.1| conserved hypothetical protein [Propionibacterium acnes HL059PA2] gi|315101976|gb|EFT73952.1| conserved hypothetical protein [Propionibacterium acnes HL046PA1] gi|315110101|gb|EFT82077.1| conserved hypothetical protein [Propionibacterium acnes HL030PA2] gi|327454502|gb|EGF01157.1| hypothetical protein HMPREF9581_00677 [Propionibacterium acnes HL087PA3] gi|327456571|gb|EGF03226.1| hypothetical protein HMPREF9586_00950 [Propionibacterium acnes HL083PA2] gi|327457153|gb|EGF03808.1| hypothetical protein HMPREF9584_00349 [Propionibacterium acnes HL092PA1] gi|328756266|gb|EGF69882.1| hypothetical protein HMPREF9579_00755 [Propionibacterium acnes HL087PA1] gi|328757047|gb|EGF70663.1| hypothetical protein HMPREF9588_01290 [Propionibacterium acnes HL025PA2] Length = 256 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 59/171 (34%), Gaps = 5/171 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + A + V G S A+ + + Q +G S+S+++ Sbjct: 83 REVARATRALAGRVSVGEIPSVALEHVADDVE-----VLAQARRAQAVGGSVSDALIATS 137 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + + + + G L+ A +++ R ++A + + A+AS I+ Sbjct: 138 RQPGMAGLVPLAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIM 197 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 G LP + + L G L + +G++ + + Sbjct: 198 GLLPLVGLLMGHVVGAHPTVFLTTTWLGRACLLGSTLLACVGVLWSESLAD 248 >gi|291286430|ref|YP_003503246.1| Type II secretion system F domain protein [Denitrovibrio acetiphilus DSM 12809] gi|290883590|gb|ADD67290.1| Type II secretion system F domain protein [Denitrovibrio acetiphilus DSM 12809] Length = 397 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 59/180 (32%), Gaps = 11/180 (6%) Query: 6 KKRTAKFL-----DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 K++ ++ P+ + + +G+P++ A+ V D R + Sbjct: 48 KRKRDRYSFSLKKKALPDIFFQLSILISSGIPLTRALKVTADTVKDTKMK---RSLLDME 104 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +S + S + + + S+ G LS L ++SR +R+ K+ Sbjct: 105 EKVSSGKRFSD-AMKPYEKIYTELYIHLIRTSEKVGRLSSVLLDISRFEEERRKTGEKIT 163 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMV 178 + M + + + T V D +LLG + G+ V Sbjct: 164 SAMMYPSVVMMLGLGVVGFMLTFVVPKLESIFKSAGADIPSSTKILLGTSRFLQDYGMYV 223 >gi|50841724|ref|YP_054951.1| hypothetical protein PPA0231 [Propionibacterium acnes KPA171202] gi|50839326|gb|AAT81993.1| hypothetical protein PPA0231 [Propionibacterium acnes KPA171202] Length = 256 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 59/171 (34%), Gaps = 5/171 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + A + V G S A+ + + Q +G S+S+++ Sbjct: 83 REVARATRALAGRVSVGEIPSVALEHVADDVE-----VLAQARRAQAVGGSVSDALIATS 137 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + + + + G L+ A +++ R ++A + + A+AS I+ Sbjct: 138 RQPGMAGLVPLAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIM 197 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 G LP + + L G L + +G++ + + Sbjct: 198 GLLPLVGLLMGHVVGAHPTVFLTTTWLGRACLLGSTLLACVGVLWSESLAD 248 >gi|327189775|gb|EGE56919.1| putative tadC pilus assembly protein [Rhizobium etli CNPAF512] Length = 314 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 71/165 (43%), Gaps = 4/165 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS---EFRRVIE 57 + + ++ FP+ +D+++ + AG+ + A + + D + ++ Sbjct: 149 IDRRGAAKEREYRRLFPDFMDMLIVCLDAGMSIEAAANRVAREFVDKQQDFGLHLSIMML 208 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G L E+++ + + + E S + +LG ++++ L S+ +RD + ++A Sbjct: 209 EVRGGRRLREALANLATRLRIDEARALSVLFRQSEELGTSVTQTLRVYSKEMRDIRVVRA 268 Query: 118 KVQALSMEAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRG 161 + +A ++ K + L P + ++ +++L+ G Sbjct: 269 EEKANALPVKMLLPLGAFLFPVSLFIVLVPVVMRVVSLLMGMKPG 313 >gi|254168637|ref|ZP_04875480.1| Bacterial type II secretion system protein F domain [Aciduliprofundum boonei T469] gi|289595686|ref|YP_003482382.1| Type II secretion system F domain protein [Aciduliprofundum boonei T469] gi|197622471|gb|EDY35043.1| Bacterial type II secretion system protein F domain [Aciduliprofundum boonei T469] gi|289533473|gb|ADD07820.1| Type II secretion system F domain protein [Aciduliprofundum boonei T469] Length = 290 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 22/153 (14%), Positives = 66/153 (43%), Gaps = 3/153 (1%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L ++ K + FP+ L + S R G+ ++D++ V + E +R+ G Sbjct: 57 MLHTRKIKKMEERFPDFLRDVAESSRFGMTLADSIVVASSGKYGALTDEIKRMASKISWG 116 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + +++ + + + +I ++ GGN+++ L+ ++R R+ + + Sbjct: 117 VPVKDALLSFNERVKTPLIDRITAIIIKSNEAGGNIADVLSMVARNARESQLAAKER--- 173 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++E +++ + F + + ++ + Sbjct: 174 NIEMFTYGFVLLTSFFVFLATIIILNNSFLPEM 206 >gi|33601083|ref|NP_888643.1| hypothetical protein BB2100 [Bordetella bronchiseptica RB50] gi|33575518|emb|CAE32596.1| putative membrane protein [Bordetella bronchiseptica RB50] Length = 298 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 49/135 (36%), Gaps = 1/135 (0%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISR 71 + P LD++ AGL + A+ P+R + + G+ +++ Sbjct: 153 ARELPFILDLMTLCAEAGLGMHGALQQAASHGPPGPLRELLVQALCDMRAGMPRRQAMQA 212 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + V + ++ G +L L L+ R ++ +A+ A+ K Sbjct: 213 LAARADSPPVRAWVGALAHADAQGMSLGPMLRGLATRYRAERHQRAERLAMEAPVKMLLP 272 Query: 132 IIGSLPFCVSTLVYF 146 +I + C ++ F Sbjct: 273 LIACIFPCTFIVLAF 287 >gi|322615964|gb|EFY12881.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620748|gb|EFY17608.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623900|gb|EFY20737.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627348|gb|EFY24139.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630655|gb|EFY27419.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638125|gb|EFY34826.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640611|gb|EFY37262.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645604|gb|EFY42131.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648101|gb|EFY44568.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656866|gb|EFY53152.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657423|gb|EFY53695.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663742|gb|EFY59942.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666575|gb|EFY62753.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672266|gb|EFY68378.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676422|gb|EFY72493.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679485|gb|EFY75530.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686186|gb|EFY82170.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195030|gb|EFZ80216.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200061|gb|EFZ85148.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201118|gb|EFZ86187.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209515|gb|EFZ94448.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212233|gb|EFZ97057.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216538|gb|EGA01264.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219887|gb|EGA04365.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225833|gb|EGA10053.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228625|gb|EGA12754.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236761|gb|EGA20837.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239738|gb|EGA23785.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242214|gb|EGA26243.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249362|gb|EGA33278.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252305|gb|EGA36156.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256605|gb|EGA40335.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262974|gb|EGA46524.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265459|gb|EGA48955.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271753|gb|EGA55171.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 400 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 23/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAQQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + +L G L++ L+R + ++ + V+ Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLADCCFELARQQKAQRQITVSVKKALRYPA---I 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183 I+ V +++F P + + + LL + G L++ Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGWLIL 221 >gi|254785262|ref|YP_003072690.1| MSHA biogenesis protein, MshG [Teredinibacter turnerae T7901] gi|237684077|gb|ACR11341.1| MSHA biogenesis protein, MshG [Teredinibacter turnerae T7901] Length = 409 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 18/163 (11%), Positives = 48/163 (29%), Gaps = 9/163 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMV 73 D + +AG+P++ + + E V E G+SLS ++ + Sbjct: 68 DLVMFCRQMYTVTKAGIPLTRGIRGLAASVRHEHFREVLNDVAEKLETGMSLSRAMRQHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G L E + L + + +V++ +++ Sbjct: 128 K-----VFDSLFVSMINVGESSGKLDEIFRQIGFYLERDEETRKRVKSAMRYPS---FVV 179 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 +L + + P + + ++ Sbjct: 180 VALVIAFVVINIYVIPPFAKMFSKFGAELPIVTRGLIATSNAF 222 Score = 36.3 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 10/127 (7%), Positives = 38/127 (29%), Gaps = 5/127 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + AG+P++ ++++ +P S + I + + + ++ + Sbjct: 277 RSFSLMLSAGVPITQSLSLCAAAIDNPFLSAKIQQIRQ-----GVERGETLLRTHLQAEL 331 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + + G + L +++ + K +E + + Sbjct: 332 FTPLVLQMISVGEESGQVDNLLRDVAEFYEREVDYDLKTLTDRIEPLLIIVLAVFVTLLA 391 Query: 141 STLVYFT 147 + Sbjct: 392 LGIFLPL 398 >gi|89902130|ref|YP_524601.1| type II secretion system protein [Rhodoferax ferrireducens T118] gi|89346867|gb|ABD71070.1| type II secretion system protein [Rhodoferax ferrireducens T118] Length = 412 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 19/171 (11%), Positives = 54/171 (31%), Gaps = 6/171 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLS 66 R ++D + +AG+P+ A A + + + + + + G LS Sbjct: 62 RKPVVVEDILVFSRQMYTLNKAGVPILRAFAGLEASATKPAMVDMLKDIRASLDQGRELS 121 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++R F + ++ G L+E L+ L ++++ +++ Sbjct: 122 AAMAR-----HQDVFGAFYISMIRVGEMTGRLTEVFLRLNEHLEFERDVRERIKQAMRYP 176 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + ++ V + +A + ++ Sbjct: 177 IFVLIAMAIAVVILNIFVIPVFANVFAGFHAELPLITRGLLAFSAWMLAWW 227 >gi|16128099|ref|NP_414648.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli str. K-12 substr. MG1655] gi|89106987|ref|AP_000767.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli str. K-12 substr. W3110] gi|170021540|ref|YP_001726494.1| type IV pilin biogenesis protein [Escherichia coli ATCC 8739] gi|170079743|ref|YP_001729063.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli str. K-12 substr. DH10B] gi|238899505|ref|YP_002925301.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli BW2952] gi|253774866|ref|YP_003037697.1| type IV pilin biogenesis protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254037520|ref|ZP_04871597.1| type II secretion system protein [Escherichia sp. 1_1_43] gi|254160226|ref|YP_003043334.1| type IV pilin biogenesis protein [Escherichia coli B str. REL606] gi|256025418|ref|ZP_05439283.1| type IV pilin biogenesis protein [Escherichia sp. 4_1_40B] gi|297517077|ref|ZP_06935463.1| type IV pilin biogenesis protein [Escherichia coli OP50] gi|300949875|ref|ZP_07163840.1| type II secretion system F domain protein [Escherichia coli MS 116-1] gi|300955970|ref|ZP_07168303.1| type II secretion system F domain protein [Escherichia coli MS 175-1] gi|301646418|ref|ZP_07246300.1| type II secretion system F domain protein [Escherichia coli MS 146-1] gi|307136705|ref|ZP_07496061.1| type IV pilin biogenesis protein [Escherichia coli H736] gi|331640557|ref|ZP_08341705.1| protein transport protein HofC [Escherichia coli H736] gi|2506494|sp|P36646|HOFC_ECOLI RecName: Full=Protein transport protein hofC gi|1786295|gb|AAC73217.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli str. K-12 substr. MG1655] gi|85674330|dbj|BAB96674.2| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli str. K12 substr. W3110] gi|169756468|gb|ACA79167.1| type II secretion system protein [Escherichia coli ATCC 8739] gi|169887578|gb|ACB01285.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli str. K-12 substr. DH10B] gi|226840626|gb|EEH72628.1| type II secretion system protein [Escherichia sp. 1_1_43] gi|238860031|gb|ACR62029.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli BW2952] gi|242375940|emb|CAQ30621.1| protein transport protein HofC [Escherichia coli BL21(DE3)] gi|253325910|gb|ACT30512.1| type II secretion system protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972127|gb|ACT37798.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli B str. REL606] gi|253976336|gb|ACT42006.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli BL21(DE3)] gi|260450689|gb|ACX41111.1| type II secretion system protein [Escherichia coli DH1] gi|300317190|gb|EFJ66974.1| type II secretion system F domain protein [Escherichia coli MS 175-1] gi|300450753|gb|EFK14373.1| type II secretion system F domain protein [Escherichia coli MS 116-1] gi|301075388|gb|EFK90194.1| type II secretion system F domain protein [Escherichia coli MS 146-1] gi|309700315|emb|CBI99603.1| protein transport protein HofC [Escherichia coli ETEC H10407] gi|315134797|dbj|BAJ41956.1| type IV pilin biogenesis protein [Escherichia coli DH1] gi|315616117|gb|EFU96736.1| bacterial type II secretion system F domain protein [Escherichia coli 3431] gi|323939856|gb|EGB36056.1| type II secretion system protein F [Escherichia coli E482] gi|323960050|gb|EGB55696.1| type II secretion system protein F [Escherichia coli H489] gi|323970776|gb|EGB66030.1| type II secretion system protein F [Escherichia coli TA007] gi|331040303|gb|EGI12510.1| protein transport protein HofC [Escherichia coli H736] gi|332341436|gb|AEE54770.1| type IV pilus assembly protein PilC [Escherichia coli UMNK88] Length = 400 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 21/182 (11%), Positives = 54/182 (29%), Gaps = 22/182 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLM 235 Query: 180 RL 181 R Sbjct: 236 RR 237 >gi|331002545|ref|ZP_08326062.1| hypothetical protein HMPREF0491_00924 [Lachnospiraceae oral taxon 107 str. F0167] gi|330409148|gb|EGG88604.1| hypothetical protein HMPREF0491_00924 [Lachnospiraceae oral taxon 107 str. F0167] Length = 266 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 70/179 (39%), Gaps = 8/179 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIETQHLGLSLSES 68 +F + L+ + S +G +A A + +E R +I + + + Sbjct: 90 EFRDLLEALTTSYSSGKNTMEAFAESYQDLLSLYGEKSDIVNETRIIIAGMTNNIIIEDL 149 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + L +V F++ + GG++ + + + +I+ D+ ++ +++ + E + Sbjct: 150 LKDFAKRCGLDDVESFASTFESGLRQGGDIKQVVWDSRKIINDKIEIEMEIKTMLTEKEN 209 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 I+ +P + + G M+ N M+ A ++ R ++N + Sbjct: 210 ELNIMMVMPLVIMITLSGM--GTMSAAANTAFSVMVKIFVIALFAGAYIMGRKIVNIRI 266 >gi|255657468|ref|ZP_05402877.1| type IV pilus assembly protein [Clostridium difficile QCD-23m63] gi|296449063|ref|ZP_06890853.1| type IV pilus assembly protein [Clostridium difficile NAP08] gi|296879886|ref|ZP_06903859.1| type IV pilus assembly protein [Clostridium difficile NAP07] gi|296262156|gb|EFH08961.1| type IV pilus assembly protein [Clostridium difficile NAP08] gi|296429175|gb|EFH15049.1| type IV pilus assembly protein [Clostridium difficile NAP07] Length = 402 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 20/187 (10%), Positives = 61/187 (32%), Gaps = 7/187 (3%) Query: 1 MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIET 58 ++ +KR D + V +G+ + + +S++ +R E R++ Sbjct: 50 IRLSSRKRKKDLGADQISHFCRQFAIIVSSGINSISGLETLARRSTNITLREEINRIVAE 109 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 +G ++++S+ P + + G L E L +++ +K K Sbjct: 110 IKVGSTIADSMLSSKSKFPK-----LLGAMVATGEATGKLDEVLKSMASFYASEHRVKQK 164 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 ++ + + F + + + + + + + + Sbjct: 165 LRNAATYPLIVLISSFIMIFIFTAFMVPKMINSITTVGATLPLITRIVMGFGMFMKKFWI 224 Query: 179 MRLMINF 185 + L++ Sbjct: 225 IVLLVII 231 >gi|238911200|ref|ZP_04655037.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 400 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAQQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + +L G L+E L+R + ++ + V+ Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPA---I 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183 I+ V +++F P + + + LL + G L++ Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGAAWGWLIL 221 >gi|215488286|ref|YP_002330717.1| putative type II secretion protein [Escherichia coli O127:H6 str. E2348/69] gi|312968708|ref|ZP_07782917.1| general secretion pathway protein F [Escherichia coli 2362-75] gi|331648752|ref|ZP_08349840.1| general secretion pathway protein F [Escherichia coli M605] gi|215266358|emb|CAS10795.1| putative type II secretion protein [Escherichia coli O127:H6 str. E2348/69] gi|312286926|gb|EFR14837.1| general secretion pathway protein F [Escherichia coli 2362-75] gi|323188612|gb|EFZ73897.1| general secretion pathway protein F [Escherichia coli RN587/1] gi|330909025|gb|EGH37539.1| general secretion pathway protein E [Escherichia coli AA86] gi|331042499|gb|EGI14641.1| general secretion pathway protein F [Escherichia coli M605] Length = 407 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + ML+ ++ G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDTLQTSGVYW 229 >gi|206559898|ref|YP_002230662.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] gi|198035939|emb|CAR51831.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] Length = 332 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 57/158 (36%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 ++ R + P +D++ GL + ++ V+ + E Sbjct: 169 VRRRATARRQSIAAELPLLVDMLRLLQGVGLSLDQSIQVVTHDFQTMLPVLSWELGVAQR 228 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+ R+ +++ ++ + GG + E L LR+ + Sbjct: 229 QFAAGRTREQSLQRLTNSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREGRRATL 288 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + Q + K + +I +L + L+ PG M VL Sbjct: 289 REQIGRLTVKMTGVMIVTLLPAL--LIVTAGPGIMTVL 324 >gi|94496441|ref|ZP_01303018.1| General secretion pathway protein F [Sphingomonas sp. SKA58] gi|94424187|gb|EAT09211.1| General secretion pathway protein F [Sphingomonas sp. SKA58] Length = 405 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 17/165 (10%), Positives = 44/165 (26%), Gaps = 5/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + ++ P+ +++ I QS + G L Sbjct: 66 KELTLFTRQLSTLIQV-SPLEESLRTIGRQSEQDHVRAIVGTVH----GGVLEGRRLADA 120 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G+L + LS ++ + M++KV A Sbjct: 121 LGAEPRSFPPLYRAMISAGESSGSLPTIMERLSDLMERQALMRSKVLTAIAYPSVLATFA 180 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + V + + + + + + L G Sbjct: 181 VCVVAALMIFVVPKVVEQFDTVGQELPLLTRMVMGLSAFLAGYWW 225 >gi|254458997|ref|ZP_05072420.1| type II secretion system protein [Campylobacterales bacterium GD 1] gi|207084268|gb|EDZ61557.1| type II secretion system protein [Campylobacterales bacterium GD 1] Length = 414 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 71/181 (39%), Gaps = 9/181 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGL 63 IKKR K D A+ + AG+ + D+++ I + D ++ F R+ + + G Sbjct: 64 IKKRKIK-PDALIAAVRQLAVMTNAGISIHDSLSEIAASTDDQALKHVFGRLADDINAGH 122 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 +LS S+ E+ S + + GNL EAL +L+ +L + + K + Sbjct: 123 ALSSSMENF-----RFELGNLSIAMVQLGEKTGNLDEALYSLADMLEEIRANIIKFKKAM 177 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP--RGHMLLGVAAAFMLIGIMVMRL 181 + + + + V L + +LL + F G+ V+ + Sbjct: 178 AYPRNVMIAMAIAFTILISYVVPQFKDIFESLNAELPMPTQILLTLEHLFNNYGLYVLAI 237 Query: 182 M 182 + Sbjct: 238 L 238 >gi|91774435|ref|YP_544191.1| type II secretion system protein [Methylobacillus flagellatus KT] gi|91708422|gb|ABE48350.1| type II secretion system protein [Methylobacillus flagellatus KT] Length = 401 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 17/173 (9%), Positives = 60/173 (34%), Gaps = 6/173 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLS 66 R+ L D + + AG+P+ + + + + + + ++ + G LS Sbjct: 54 RSKVSLQDLVIFCFQLEQLTSAGVPLLEGLVDLRDSTTNPHFQKIIGSLVSSVEGGKMLS 113 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++++ + + + G L E +L+ L+ + + ++ + L Sbjct: 114 QALAEYP-----YVFNRVFVSLIKAGEQTGRLPEIFRHLADTLKWQDELISQTRKLLAYP 168 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ + + + ++ + + +A + ++G + Sbjct: 169 TFVLVVVVAAVIFLMAYLVPQMVSFLGNIGQALPLQTRILIAVSNAVVGYWWL 221 >gi|312970200|ref|ZP_07784382.1| bacterial type II secretion system F domain protein [Escherichia coli 1827-70] gi|310337698|gb|EFQ02809.1| bacterial type II secretion system F domain protein [Escherichia coli 1827-70] Length = 400 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 21/182 (11%), Positives = 54/182 (29%), Gaps = 22/182 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLM 235 Query: 180 RL 181 R Sbjct: 236 RR 237 >gi|110643198|ref|YP_670928.1| type II secretion protein GspF [Escherichia coli 536] gi|47155033|emb|CAE85232.1| GspF, hypothetical type II secretion protein [Escherichia coli] gi|110344790|gb|ABG71027.1| hypothetical type II secretion protein GspF [Escherichia coli 536] Length = 407 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + ML+ ++ G+ Sbjct: 183 TGVVTILLTAVVPEIIEQFDHLGHALPASTRMLIAMSDTLQTSGVYW 229 >gi|260221534|emb|CBA30195.1| hypothetical protein Csp_C22330 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 414 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 18/165 (10%), Positives = 53/165 (32%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 +D + +AG+P+ A A + + + + V + G LS +++R Sbjct: 70 EDLLIFSRQMYTLNKAGVPILRAFAGLEASATKPAMVELLKDVRSSLDQGRELSAALARH 129 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 F + ++ G L+E L+ + ++++ +++ Sbjct: 130 SALFGN-----FYIAMIRVGEMTGRLTEVFLRLNEHMEFERDVRERIKQAMRYPSFVMIA 184 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + ++ V ++ + + +I Sbjct: 185 MAAAIVILNIFVIPVFAKVFAGFNSELPLITRGLLGFSNWMINWW 229 >gi|282163998|ref|YP_003356383.1| putative type II secretion system protein [Methanocella paludicola SANAE] gi|282156312|dbj|BAI61400.1| putative bacterial type II secretion system protein [Methanocella paludicola SANAE] Length = 678 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 21/150 (14%), Positives = 59/150 (39%), Gaps = 3/150 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R K + P+ L + + G+ ++ ++A+I + + SE +++ G+ ++ Sbjct: 453 RRERKISAEMPDFLKKLASTNETGMTLTQSIALISNDNFGTISSEVKKINRNIQWGIDVN 512 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + T+I+ S+ G++ + L + + + ++ + + Sbjct: 513 TALKMFGNSLNTALSQRVITLITKASESSGDIRDVLNVAANDAKMGERIRRERSDGML-- 570 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 II VY S ++ V+ Sbjct: 571 -IYVAIIFITFCVFIYCVYTLSSSFIPVMY 599 Score = 48.2 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 21/182 (11%), Positives = 58/182 (31%), Gaps = 4/182 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQHLG 62 R +K P A+ + + G+ + + + + + E +I Sbjct: 126 ASDRKSKINKQIPYAVTFMYALSKGGMDIIGILRALNSAESTYGDISREIGIIIRDMDYF 185 Query: 63 L-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 L +I + T + GG++++ L + + R K Sbjct: 186 GSDLRTAIINCTNQTSSDLLQDLLTNLLSVIDSGGDVTQYLYGKTDQYQQRLLQDQKSFL 245 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + A +++ + + ++ + MN ++ ++++ + +M Sbjct: 246 EILGLIAESYVTALVAAPLFIIIMQSVMTIMNG-GSNILLYIIIYAMVPIGSVAFTIMIS 304 Query: 182 MI 183 MI Sbjct: 305 MI 306 >gi|204927253|ref|ZP_03218455.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323918|gb|EDZ09113.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 400 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 23/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + +L G L++ L+R + ++ + V+ Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLADCCFELARQQKAQRQITVSVKKALRYPA---I 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183 I+ V +++F P + + + LL + G L++ Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGWLIL 221 >gi|331684605|ref|ZP_08385197.1| general secretion pathway protein F [Escherichia coli H299] gi|331078220|gb|EGI49426.1| general secretion pathway protein F [Escherichia coli H299] Length = 407 Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + ML+ ++ G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDTLQTSGVYW 229 >gi|221195413|ref|ZP_03568468.1| putative type II secretion system protein [Atopobium rimae ATCC 49626] gi|221184600|gb|EEE16992.1| putative type II secretion system protein [Atopobium rimae ATCC 49626] Length = 248 Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 17/145 (11%), Positives = 57/145 (39%), Gaps = 1/145 (0%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + I + + + P LD++ + +GL ++ + + S + + + + + + Sbjct: 93 RKRIAHQRNAIIKEMPRMLDVLTLGLSSGLSFDSSLDLYCNRCSGVLSEKMSQALLSWQM 152 Query: 62 -GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + S ++ + + + F++V++ G LS++L + +RD + + + Sbjct: 153 GATTRSTALEEIAAEYGITSLLSFASVVTESLAFGTPLSDSLERQAGTIRDDQRAALEAE 212 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145 + K + + + + Sbjct: 213 IEKVPVKMLLPLGTLIVPAMLIAIL 237 >gi|170730041|ref|YP_001775474.1| general secretory pathway protein F [Xylella fastidiosa M12] gi|167964834|gb|ACA11844.1| general secretory pathway protein F [Xylella fastidiosa M12] Length = 405 Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 59/173 (34%), Gaps = 7/173 (4%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVR 74 + +V + AG P+ A++++ + R V + G LS ++ R Sbjct: 68 LIHFTQQLVALLGAGQPLDRALSILTDLPDNEKSRRIIGDVCDIVRGGTPLSIALER--- 124 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 S ++ + GGN+ E L L+ L + ++AKV + +++G Sbjct: 125 --QHGVFSRLYVTMARAGESGGNMPETLQRLADYLERNQVVRAKVINALIYPVILIFVVG 182 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + V L + GV A IG L+ + Sbjct: 183 GALAFLLGYVVPQFGAMYESL-DVALPWFTQGVLALGHFIGDWWFLLLAVIGI 234 >gi|253997795|ref|YP_003049858.1| type II secretion system protein [Methylovorus sp. SIP3-4] gi|313199859|ref|YP_004038517.1| type II secretion system protein [Methylovorus sp. MP688] gi|253984474|gb|ACT49331.1| type II secretion system protein [Methylovorus sp. SIP3-4] gi|312439175|gb|ADQ83281.1| type II secretion system protein [Methylovorus sp. MP688] Length = 401 Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 19/174 (10%), Positives = 60/174 (34%), Gaps = 6/174 (3%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSL 65 KR+ L D + + +G+P+ + +A + +++ + V G L Sbjct: 53 KRSHVSLQDLMMFCFQLEQLTSSGVPLLEGLADLRDSTTNLHFQKIIGAVTSEVEGGKLL 112 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S++++ + + + + G L E NL+ + + + ++ + L Sbjct: 113 SQALAEHPK-----VFNPLFVSLVQAGEQTGRLPEVFDNLANTFKWQDELLSQTRRLLAY 167 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ S + + G++ + + + + + + + Sbjct: 168 PLFIMVMVLSAVVFLMIYLVPKMVGFLRNMGQELPLQTKVLIFLSNAFVNYWWL 221 Score = 35.9 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 38/137 (27%), Gaps = 7/137 (5%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVR 74 + G+P+ DA+ + V R + G S+SES Sbjct: 266 LARFARYFALMYQTGIPILDAIKTSENIVDNRAVADALTRAHHQINAGESMSESFRNAGL 325 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + G L AL +S + +E + + Sbjct: 326 ------FPALVVRMIKVGESTGALDVALLKISYFYDRDVRESIEKMLKMLEPALTVILGA 379 Query: 135 SLPFCVSTLVYFTSPGY 151 + F + +++ + Sbjct: 380 IMAFIMFSVLGPVYDSF 396 >gi|300923113|ref|ZP_07139173.1| type II secretion system F domain protein [Escherichia coli MS 182-1] gi|301330114|ref|ZP_07222783.1| type II secretion system F domain protein [Escherichia coli MS 78-1] gi|300420568|gb|EFK03879.1| type II secretion system F domain protein [Escherichia coli MS 182-1] gi|300843861|gb|EFK71621.1| type II secretion system F domain protein [Escherichia coli MS 78-1] gi|323945733|gb|EGB41781.1| bacterial type II secretion system protein F containing protein [Escherichia coli H120] Length = 400 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 21/182 (11%), Positives = 54/182 (29%), Gaps = 22/182 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLM 235 Query: 180 RL 181 R Sbjct: 236 RR 237 >gi|331651002|ref|ZP_08352030.1| protein transport protein HofC [Escherichia coli M718] gi|331051456|gb|EGI23505.1| protein transport protein HofC [Escherichia coli M718] Length = 400 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 21/182 (11%), Positives = 54/182 (29%), Gaps = 22/182 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGIMLTIANKLLM 235 Query: 180 RL 181 R Sbjct: 236 RR 237 >gi|300867503|ref|ZP_07112154.1| type II secretion system protein [Oscillatoria sp. PCC 6506] gi|300334497|emb|CBN57322.1| type II secretion system protein [Oscillatoria sp. PCC 6506] Length = 375 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 22/164 (13%), Positives = 55/164 (33%), Gaps = 6/164 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 D AG+ + +AV+ Q S+ +++ + G LS ++ + Sbjct: 33 KDLAIFARQFAAMFNAGVAMVRCLAVLNEQCSNPKLKNALTSISADVEQGSELSTAMRKF 92 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + ++GG L E L L+ ++ ++++++ K +I Sbjct: 93 PD-----VFDQLFLSMVGAGEVGGVLDEVLERLAVLMEKNHKTQSEIKSAMSYPKTVLFI 147 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + F ++ + T + D L ++ + Sbjct: 148 AIIIFFAMTIFLLPTFAKIFKDIGADLPAFTLFMLSISAFCTTW 191 >gi|119477883|ref|ZP_01618006.1| general secretion pathway protein F [marine gamma proteobacterium HTCC2143] gi|119449044|gb|EAW30285.1| general secretion pathway protein F [marine gamma proteobacterium HTCC2143] Length = 408 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 22/179 (12%), Positives = 62/179 (34%), Gaps = 12/179 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISR 71 I V++ +P+ +A+ Q+ ++S +V G +L+ ++ Sbjct: 68 QSQLTLITRQIATLVQSNVPLDEALTATAQQAKQSRIKSLMLQVRARVLEGHTLAYALGD 127 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + + G L L L+ + ++ + K++ + Sbjct: 128 FPQ-----VFNEMYCAMVKAGEHAGFLGTVLEQLADYTENSQHTQQKMKGAMIYPL---V 179 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL---GVAAAFMLIGIMVMRLMINFDV 187 +I +S L+ F P + + + +L +A++ + L++ + Sbjct: 180 LIVLSVAVISILMVFVVPDLVGMFNRSDQELPMLTQIVIASSDFFAEKWWLVLLVFIAI 238 >gi|256024454|ref|ZP_05438319.1| General secretion pathway protein F [Escherichia sp. 4_1_40B] Length = 407 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 54/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA--FMLIGIMV 178 + + T V + L + + +A + G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDMLQTSGVYW 229 >gi|70732597|ref|YP_262360.1| type IV pilus biogenesis protein PilC [Pseudomonas fluorescens Pf-5] gi|68346896|gb|AAY94502.1| type IV pilus biogenesis protein PilC [Pseudomonas fluorescens Pf-5] Length = 405 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 53/154 (34%), Gaps = 9/154 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 D + ++AG+P+ + +I +R + G SL+ ++ R Sbjct: 66 RDIALLTRQLATLMQAGVPLLQSFDIIAESFEHLQMRQLLASLKRDIEAGSSLAAALRRQ 125 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R+ + + G L L ++ +N+KA+++ + A + Sbjct: 126 PRHFDP-----LYCNLVDAGEQAGALDTLLERVATYKEKSENLKARLKKAMVYPLA---V 177 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 IG S L+ P + ++ LL Sbjct: 178 IGVAVVVSSILLLKVVPQFQSLFAGFNAELPLLT 211 Score = 37.0 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 40/129 (31%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG+P+ A+ + G + R +R+ + G+ L+ ++ Sbjct: 277 RTLATTFAAGVPLVQALDSVAGASGNPVFRQAVQRIRQQVAAGMQLNFAMRASG------ 330 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + ++ + G L L ++ + ME + G + Sbjct: 331 VFPTMAIQMTAIGEESGTLDHLLEKVAIHYEVEVDNLVDSLTSLMEPLIMVVLGGIVGAL 390 Query: 140 VSTLVYFTS 148 V + Sbjct: 391 VVAMYLPIF 399 >gi|18311267|ref|NP_563201.1| type II secretion system protein F [Clostridium perfringens str. 13] gi|18145950|dbj|BAB81991.1| probable pilin biogenesis protein [Clostridium perfringens str. 13] Length = 401 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 20/157 (12%), Positives = 51/157 (32%), Gaps = 9/157 (5%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSE 67 L D + +GL + A+ +++ Q P E V G +L+ Sbjct: 57 RKVKLKDIAIFCRQFYVMLDSGLSIGKALNILIEQGEKPKIREALIGVNGDLKRGETLAN 116 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 S+ + T + + GNL L ++ ++ K+++ + Sbjct: 117 SMRK-----RKDVFPNLLTSMIDAGERSGNLDIILKRMAEYYEKETKIRGKIKSAMIYPI 171 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 + ++ ++ F P ++ + + + Sbjct: 172 ---VLGVVAIIAITFILTFVMPTFVQMFEENNVDLPM 205 Score = 38.6 bits (88), Expect = 0.38, Method: Composition-based stats. Identities = 16/134 (11%), Positives = 43/134 (32%), Gaps = 7/134 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77 + +G+ + ++ ++ + + E +V E G L +SI M Sbjct: 270 FTRTMGIVSSSGMSLVTSLEIVASVVGNKIAEKELLKVKEKVLKGEGLGDSI------MK 323 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + + G+L L + D + + +E + + Sbjct: 324 IKIFPPMLASMVKVGEEAGSLDSILDKTADFYDDELEREIQTATALIEPAMIVVMGIIIG 383 Query: 138 FCVSTLVYFTSPGY 151 F + +++ Y Sbjct: 384 FLLISILTPMFKMY 397 >gi|149911029|ref|ZP_01899658.1| MSHA biogenesis protein MshG [Moritella sp. PE36] gi|149805932|gb|EDM65918.1| MSHA biogenesis protein MshG [Moritella sp. PE36] Length = 405 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 20/165 (12%), Positives = 51/165 (30%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + RAG+P+ A+ + S ++ V+ + G +LS S++ Sbjct: 65 AELVIFARQMYSLTRAGIPMIRAIKGLSESSSHAKLKDVLNDVVVRLNSGNTLSASMAAH 124 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + I + G L ++ ++ L + + ++ + Sbjct: 125 P-----HVFASIFVSIVRVGENTGRLDDSFLQIANYLELEMDTRRRIASAVRYPIFVLIA 179 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 I ++ V T N + +A++ + Sbjct: 180 ITGAMVILNIFVIPTFANMFNKFGVELPWATRTLLASSAFFVNYW 224 Score = 37.0 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 11/133 (8%), Positives = 38/133 (28%), Gaps = 7/133 (5%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVR 74 +R G+P++++++++ + + G SL+ + S Sbjct: 270 LSRFARSFSLMLRGGVPLNNSLSLVASTVDNAWMEVRILGMRAGIEEGKSLTITASESGM 329 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + P + G + + L ++ + + + +E + Sbjct: 330 FTP------LILQMISVGDETGQVDDLLLEAAQFYEREVDYELQSLTAKIEPILIGIVAI 383 Query: 135 SLPFCVSTLVYFT 147 + + Sbjct: 384 MVLILALGIFVPM 396 >gi|153215376|ref|ZP_01949974.1| MSHA biogenesis protein MshG [Vibrio cholerae 1587] gi|124114747|gb|EAY33567.1| MSHA biogenesis protein MshG [Vibrio cholerae 1587] Length = 407 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 16/165 (9%), Positives = 43/165 (26%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72 + + +AG+P+ ++ + + V G +LS Sbjct: 67 EVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS-----A 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + S + + G L +AL L+ + +++ Sbjct: 122 SMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITF 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + F ++ V + D + + + + Sbjct: 182 VLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYW 226 Score = 40.9 bits (94), Expect = 0.083, Method: Composition-based stats. Identities = 10/135 (7%), Positives = 35/135 (25%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + AG+P++ ++A+ + + + + ++ Sbjct: 269 RAQLSRFARTFSLMLSAGVPLNQSLALSAEAIDNKFLEQRIL-----EMKSQIESGVAVS 323 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G + E L +S + K +E ++ Sbjct: 324 ATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLVFV 383 Query: 133 IGSLPFCVSTLVYFT 147 + + Sbjct: 384 AAMVLVLALGIFLPM 398 >gi|222053995|ref|YP_002536357.1| general secretion pathway protein F [Geobacter sp. FRC-32] gi|221563284|gb|ACM19256.1| general secretion pathway protein F [Geobacter sp. FRC-32] Length = 403 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 57/164 (34%), Gaps = 9/164 (5%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLS 66 R L + + + + +PV +A+A + Q +R+ RV + G SL+ Sbjct: 58 RKKVGLPELSLMTRRLATLLGSSVPVYEAIATLHDQERPGELRTMLGRVRDRLAEGTSLA 117 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++++ + S + + G L L L+ L D+ +++K+ Sbjct: 118 KALAAEPQI-----FSDSYIGMVSAGEASGALEVVLERLAEFLEDQNAVRSKIVTSLAYP 172 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + + L+ F P + V L+ V Sbjct: 173 ILMVVVGTG---VMLFLLAFVVPKIVTVFEQSKAALPLITVILI 213 >gi|254491934|ref|ZP_05105113.1| Bacterial type II secretion system protein F domain [Methylophaga thiooxidans DMS010] gi|224463412|gb|EEF79682.1| Bacterial type II secretion system protein F domain [Methylophaga thiooxydans DMS010] Length = 402 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 20/142 (14%), Positives = 51/142 (35%), Gaps = 6/142 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISR 71 D + +RAGLP+++ + + Q SS + +++ G SLS ++ + Sbjct: 66 TDALIFFYRQMAFMLRAGLPLAECLQLAATQVSSPRLHLALKKMHRDIEAGQSLSSALGK 125 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P + + V + G L + L+ L + ++ ++ + Sbjct: 126 HPDVFPD-----ITINLVVAGESTGELDLIMERLAVHLEKKSQLRKQMINAMIYPVVVVL 180 Query: 132 IIGSLPFCVSTLVYFTSPGYMN 153 + + T++ ++ Sbjct: 181 AALGVAVFMVTMIIPKFAQFIQ 202 >gi|190574658|ref|YP_001972503.1| putative general secretion pathway protein F [Stenotrophomonas maltophilia K279a] gi|190012580|emb|CAQ46208.1| putative general secretion pathway protein F [Stenotrophomonas maltophilia K279a] Length = 399 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 61/176 (34%), Gaps = 8/176 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 + A + + A LP+ A++ ++ Q+ V V G L+ +++ Sbjct: 61 ELAWATRQLASLLAASLPLEGALSAVIEQAERPHVAQALTAVRADVRAGQRLTVALAARP 120 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R P + + G+L+ + L+ + +R ++AKV + A + + Sbjct: 121 RDFPP-----IYRALVGAGEDSGDLARVMERLADYIEERNALQAKVLTAFIYPAAISLVS 175 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMINFDV 187 ++ + + V ++L +A G+ V + V Sbjct: 176 VAIVIFLLSYVVPQVVTAFVQARQTLPMLTQVMLAASAFVRSWGVWVGLGIAALVV 231 Score = 37.8 bits (86), Expect = 0.75, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 38/130 (29%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P+ A+ + + V G +L ++ Sbjct: 268 FASTLAILLDAGVPLLRALEAARQTLGNALLARCADDVSARVREGAALGAALKV------ 321 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G+L+ L ++ + +A +E + G + Sbjct: 322 QKVYPPILVHLVASGEKTGSLAPLLDRAAQTISREIERRAMALTALLEPTMILVMGGVVL 381 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 382 TIVLAVLMPI 391 >gi|3025702|gb|AAC12717.1| pilus assembly protein PilC [Legionella pneumophila 130b] Length = 406 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 24/187 (12%), Positives = 57/187 (30%), Gaps = 14/187 (7%) Query: 2 KHLIKKRTAKFLD--------DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEF 52 +IKKR F D + + +G+P+ A ++ QS+ ++ Sbjct: 47 NKVIKKRKPLFDRKNKKITQADITVFSRQLATMIESGIPLVQAFDIVAKGQSNKRLKDLI 106 Query: 53 RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112 + GL+L+ES+ + + + + G+L L ++ Sbjct: 107 ETIKHDIETGLTLAESLIKHPL-----YFNELFCNLVDAGEKSGSLDIMLDKVATYKEKI 161 Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 + +K K++ A + + + V D + + Sbjct: 162 EIIKKKIKKALTYPIAVMVVALLVTAGLLIYVVPQFESLFKGFGADLPAMTRAVITMSEF 221 Query: 173 LIGIMVM 179 + + Sbjct: 222 MQAYWYI 228 Score = 38.9 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 13/135 (9%), Positives = 38/135 (28%), Gaps = 5/135 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + AGLP+ +A+ + G + + + ++ I + Sbjct: 271 AAIARFARTLSITFAAGLPLVEALKSVAGATGNIIYAKATDKIREEVATG-----QQMFT 325 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G L + L+ ++ + N + +E + + Sbjct: 326 AIENTHLFPNMVIQMVAIGEESGALEKMLSKVADFYEEEVNNAVDALSSLLEPIIMSILG 385 Query: 134 GSLPFCVSTLVYFTS 148 + V + Sbjct: 386 ILVGGLVVGMYLHIF 400 >gi|145596965|ref|YP_001161262.1| type II secretion system protein [Salinispora tropica CNB-440] gi|145306302|gb|ABP56884.1| type II secretion system protein [Salinispora tropica CNB-440] Length = 300 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 18/180 (10%), Positives = 56/180 (31%), Gaps = 3/180 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++R ++ + G + A+ V + + ++ E R + G Sbjct: 103 RAEQRAIGRIEAVGEWTRRLKDISATGQGLQAAITGTVATAPEEIQEEVRLLAARLQAGW 162 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQS-QLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++ + + + G L + L +++ + +++A Sbjct: 163 LARPALLAFADEIADPVCDQVVAALILHLTDRGERLGDVLGSIASAASAEVATRREIEAK 222 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + + + + V + Y+ P G ++ V ++ + +R M Sbjct: 223 RTQPRFAVRFLTGMTLAVLAY-GLLNTDYIRP-YGTPTGQFVMAVLGVAFVVLLAWVRAM 280 >gi|323496096|ref|ZP_08101156.1| MSHA biogenesis protein MshG [Vibrio sinaloensis DSM 21326] gi|323318840|gb|EGA71791.1| MSHA biogenesis protein MshG [Vibrio sinaloensis DSM 21326] Length = 406 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 19/168 (11%), Positives = 51/168 (30%), Gaps = 6/168 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + +AG+P+ ++ + ++ +++ V + G SL+ Sbjct: 66 EALVIFCRQLYSLTKAGVPLLRSMKGLSTNCANKQLQTALEEVTQELTNGRSLAG----- 120 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 M + S + + G L +AL L+ + +++ Sbjct: 121 SMQMHSKVFSQLFVSMINVGENTGRLDQALLQLANYYEQEVETRKRIKTAMRYPTFVISF 180 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I F ++ V N D + + + + ++ Sbjct: 181 IVVALFILNVKVIPQFATMFNRFGVDLPLPTRILINTSDFFVNYWLVM 228 Score = 42.8 bits (99), Expect = 0.024, Method: Composition-based stats. Identities = 11/135 (8%), Positives = 35/135 (25%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 ++AG+P++ ++A+ + + S+ + Sbjct: 268 RAQLSRFSRTFALMLKAGVPLNQSLALAAEALGNRFLE-----NRLLEMKASIEAGGTIS 322 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G + E L ++ + K +E + Sbjct: 323 ATAINSGIFTPLVIQMISVGEETGRIDELLLEVADFYDREVDYDLKTLTARIEPILLLIV 382 Query: 133 IGSLPFCVSTLVYFT 147 G + + Sbjct: 383 AGMVLILALGIFLPM 397 >gi|300919660|ref|ZP_07136151.1| type II secretion system F domain protein [Escherichia coli MS 115-1] gi|300413300|gb|EFJ96610.1| type II secretion system F domain protein [Escherichia coli MS 115-1] Length = 400 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 21/182 (11%), Positives = 54/182 (29%), Gaps = 22/182 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYRAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLM 235 Query: 180 RL 181 R Sbjct: 236 RR 237 >gi|126701135|ref|YP_001090032.1| type IV pilus assembly protein [Clostridium difficile 630] gi|254977136|ref|ZP_05273608.1| type IV pilus assembly protein [Clostridium difficile QCD-66c26] gi|255094465|ref|ZP_05323943.1| type IV pilus assembly protein [Clostridium difficile CIP 107932] gi|255102721|ref|ZP_05331698.1| type IV pilus assembly protein [Clostridium difficile QCD-63q42] gi|255308542|ref|ZP_05352713.1| type IV pilus assembly protein [Clostridium difficile ATCC 43255] gi|255316216|ref|ZP_05357799.1| type IV pilus assembly protein [Clostridium difficile QCD-76w55] gi|255518878|ref|ZP_05386554.1| type IV pilus assembly protein [Clostridium difficile QCD-97b34] gi|255652057|ref|ZP_05398959.1| type IV pilus assembly protein [Clostridium difficile QCD-37x79] gi|260685031|ref|YP_003216316.1| type IV pilus assembly protein [Clostridium difficile CD196] gi|260688689|ref|YP_003219823.1| type IV pilus assembly protein [Clostridium difficile R20291] gi|306521793|ref|ZP_07408140.1| type IV pilus assembly protein [Clostridium difficile QCD-32g58] gi|115252572|emb|CAJ70415.1| putative type IV pilus secretion protein [Clostridium difficile] gi|260211194|emb|CBA66676.1| type IV pilus assembly protein [Clostridium difficile CD196] gi|260214706|emb|CBE07364.1| type IV pilus assembly protein [Clostridium difficile R20291] Length = 402 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 21/187 (11%), Positives = 62/187 (33%), Gaps = 7/187 (3%) Query: 1 MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIET 58 ++ +KR D + V +G+ + + +S++ +R E R++ Sbjct: 50 IRLSSRKRKKDLGADQISHFCRQFAIIVSSGINSISGLETLARRSTNITLREEINRIVAE 109 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 +G ++++S+ P + + G L E L +++ +K K Sbjct: 110 IKVGSTIADSMLSSKSKFPK-----LLGAMVATGEATGKLDEVLKSMASFYASEHRVKQK 164 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 ++ + + F +T + + + + + + + Sbjct: 165 LRNAATYPLIVLISSFIMIFIFTTFMVPKMINSITTVGATLPLITRIVMGFGMFMKKFWI 224 Query: 179 MRLMINF 185 + L++ Sbjct: 225 IVLLVII 231 >gi|188495497|ref|ZP_03002767.1| type IV pilus assembly protein PilC [Escherichia coli 53638] gi|188490696|gb|EDU65799.1| type IV pilus assembly protein PilC [Escherichia coli 53638] Length = 400 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 21/182 (11%), Positives = 54/182 (29%), Gaps = 22/182 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLM 235 Query: 180 RL 181 R Sbjct: 236 RR 237 >gi|228982434|ref|ZP_04142693.1| hypothetical protein bthur0002_55670 [Bacillus thuringiensis Bt407] gi|228776617|gb|EEM24925.1| hypothetical protein bthur0002_55670 [Bacillus thuringiensis Bt407] Length = 314 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 68/185 (36%), Gaps = 4/185 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIET 58 + + +R + + ++++V +A ++ + + SE R+ + Sbjct: 123 IAFIKNRRLNMIEEQVGSFMNLVVERYKAQNDFPKSIKESLYDFKGQEPMYSEIRQTVLD 182 Query: 59 QHLGLSLSESISRMVRYMPLQEVSF--FSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 LG+ ++++ + R + + I++ L + + + MK Sbjct: 183 IELGIPTTDAMDNLARRTGNKYLERLSNYYQIAMTLGTEDARENLLGEAFQQFEENRKMK 242 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + ++ A+I+ + + + TS Y++ ++N G + V A ++ I Sbjct: 243 STLRKEIAGPVREAYIMVAAIPLLISYQIATSDSYVDFMLNTTPGKIGSTVICAIIMGSI 302 Query: 177 MVMRL 181 + Sbjct: 303 WFINK 307 >gi|157164422|ref|YP_001466823.1| transcription regulator AsnC [Campylobacter concisus 13826] gi|112801342|gb|EAT98686.1| type II secretion system protein [Campylobacter concisus 13826] Length = 411 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 62/168 (36%), Gaps = 8/168 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 + + + AG+ + D++ + + D ++ F+ + E + G SL+ SI Sbjct: 71 NLVATIRQLSVMTNAGISIHDSIKEVANSTEDKRLKFIFQTIDEELNQGSSLTNSIENFK 130 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 E+ + + + GN+++ALA L+ IL++ + + K + I Sbjct: 131 E-----ELGDVTLAMIRLGESTGNMADALAKLASILQEVWDNQQKFKKAIRYPITVICAI 185 Query: 134 GSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVM 179 + LV L + +LL + G ++ Sbjct: 186 IIAFVILMILVVPQFREIFEQLNAELPLPTKILLNIEYVMTNYGFYIL 233 >gi|157372482|ref|YP_001480471.1| general secretion pathway protein F [Serratia proteamaculans 568] gi|157324246|gb|ABV43343.1| general secretion pathway protein F [Serratia proteamaculans 568] Length = 403 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 24/174 (13%), Positives = 53/174 (30%), Gaps = 9/174 (5%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLG 62 ++R + + + A LP+ +A+ + QS V R+ G Sbjct: 54 AARRRHRLSSGELALVTRQLATLIAAALPLEEALLTVACQSEKKTVIQLITRIRSHVLEG 113 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LSLS+++ + + + G L L+ + R+ +K K+ Sbjct: 114 LSLSQALMQFP-----SVFDRLFCAMVAAGESSGQLPLIFTELADYVEQRQKIKNKMTQA 168 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + + L+ P + ++ + L G+ Sbjct: 169 MTYPV---ILTLVAIAVIGVLLVAVVPKVIEQFVHMKQTLPLTTQILLLCSEGV 219 >gi|117620490|ref|YP_854922.1| GspF family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561897|gb|ABK38845.1| GspF family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 406 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 52/168 (30%), Gaps = 6/168 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D+ + RAG+P+ A+A + + P++ + E G LS S+ Sbjct: 65 DELVVFSRQMYALTRAGIPILRAIAGLEESAHSKPLKRALHALGEDLGNGRPLSSSMQAH 124 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R S I + G L EA L+ + +++ Sbjct: 125 PR-----VFSSLFVAIIHVGENTGQLEEAFLQLANYFELELETRKRIKTAMRYPSFVLIA 179 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 IG ++ +V G + + +A + + + Sbjct: 180 IGIAMVILNIMVIPVFAGMFAKFGVELPLATRILLATSHFFVHYWWVM 227 Score = 39.7 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 9/132 (6%), Positives = 34/132 (25%), Gaps = 5/132 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 ++AG+P++ A++++ + + + + S + Sbjct: 270 LARFARSFSMMLKAGVPLNTALSLVADAVDNAWM-----AGRIRDMRAGIERGESLLRTA 324 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + G + + L + + K +E + Sbjct: 325 GSSGLFTPLVMQMIAVGEETGQVDDLLHEAAEYYEREVDYDLKSLTARIEPILIGIVAVM 384 Query: 136 LPFCVSTLVYFT 147 + + Sbjct: 385 VLILALGIFTPM 396 >gi|17223828|gb|AAL10695.1| hypothetical type II secretion protein [Escherichia coli ETEC H10407] Length = 407 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMV 178 + + T V + L + L+ ++ A G+ Sbjct: 183 TGVVTILLTPVVPKIIEQFDHLGHALPVSTRTLIAMSDALQASGVYW 229 >gi|330446777|ref|ZP_08310428.1| bacterial type II secretion system F domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490968|dbj|GAA04925.1| bacterial type II secretion system F domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 408 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 17/171 (9%), Positives = 46/171 (26%), Gaps = 9/171 (5%) Query: 12 FLDDFPN-----ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 F P + +AG+P+ A + ++ P+ +E L+ Sbjct: 60 FQAQLPLEILVIFCRQLYSLTKAGVPLLRAFKGLSQSANHPLLK---TTLEEVTQDLTNG 116 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + + S + + G L + L L+ + ++++ Sbjct: 117 LA-LSASMQQHPRVFSRLFISMIHVGENTGRLDQVLLQLANYYEQEMKTRRQIKSAMRYP 175 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 I ++T V + + + + + + Sbjct: 176 TFVLTAIVIAMGILNTKVIPQFASMFSRFGVELPWPTRVLIGTSNFFVHYW 226 Score = 43.2 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 11/135 (8%), Positives = 31/135 (22%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 +RAG+P++ A+ + + + + S Sbjct: 269 RAQMARFARTFSLMIRAGVPLNQAIQMAAESLGNRFLE-----NRLVEMKQGIESGSSIA 323 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G + + L ++ K +E + Sbjct: 324 RTATKSGVFTPLVLQMIAVGEETGQVDDLLLEVADFYDREVEYDLKTLTARIEPIMLVVV 383 Query: 133 IGSLPFCVSTLVYFT 147 G + + Sbjct: 384 AGMVLLLALGIFLPM 398 >gi|229591511|ref|YP_002873630.1| putative general secretion pathway protein F [Pseudomonas fluorescens SBW25] gi|229363377|emb|CAY50524.1| putative general secretion pathway protein F [Pseudomonas fluorescens SBW25] Length = 400 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 62/166 (37%), Gaps = 11/166 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + AG P+ ++ +++ Q R+ R+ E G LS+++ Sbjct: 62 AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGQPLSKALEEE 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 S + + GG L + L LS L + ++ +V + ++ Sbjct: 122 GDQ-----FSPLYLSMVRAGEAGGALEDTLRQLSDYLERSQLLRGEVINALIYPA---FL 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + ++ L+ + P ++ + + G + + + +G + Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILGLGQFL 217 >gi|254038138|ref|ZP_04872196.1| general secretion pathway protein F [Escherichia sp. 1_1_43] gi|226839762|gb|EEH71783.1| general secretion pathway protein F [Escherichia sp. 1_1_43] Length = 407 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 54/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLAGYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + L+ ++ G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDTLQTSGVYW 229 >gi|325264274|ref|ZP_08131005.1| putative bacterial type II secretion system protein F domain protein [Clostridium sp. D5] gi|324030345|gb|EGB91629.1| putative bacterial type II secretion system protein F domain protein [Clostridium sp. D5] Length = 410 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 47/156 (30%), Gaps = 9/156 (5%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--------SSDPVRSEFR 53 K ++ R + D+P + + AG+ V A + + E Sbjct: 250 KQVLADRKKQLAADYPQLISQFTLFLGAGMSVRRAWFKMAEEYEKRRDRKGPRIAYEEMS 309 Query: 54 RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDR 112 + G+S E R L F ++S + G L+E L + + Sbjct: 310 YTMHEIQGGVSEGECYERFGSRCGLPAYRRFGALLSQNLRKGGRGLNELLRKEAADAFED 369 Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 + +A+ K + L + +V Sbjct: 370 RKKQARKLGEEAGTKLLGPMFLMLAVVLIIIVVPAF 405 >gi|548513|sp|P36641|PILC_PSEPU RecName: Full=Type 4 fimbrial assembly protein pilC gi|396264|emb|CAA52333.1| pilin biogenesis protein [Pseudomonas putida] Length = 401 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 23/184 (12%), Positives = 49/184 (26%), Gaps = 21/184 (11%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR K D + ++AG+P+ A V+ D ++ ++ S Sbjct: 57 KRREK--TDPAGFSRQLATLLKAGVPLLQAFEVMGRSGCDAAQAALLARLKQDVA----S 110 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + + G L L L+ +L R + K++ + Sbjct: 111 GLGLADALQRHPGWFDTLYCNLVRVGEQSGTLDRQLEQLAGMLEQRLALHKKLRKAMIYP 170 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL-------------INDPRGH--MLLGVAAAF 171 + + V ++ G +L V+A Sbjct: 171 LLLLLTGLGVSAVLLLEVIPQFQSLFAGFDAALPAFTQWVIDLSTGLGRHAPVLLVSAVL 230 Query: 172 MLIG 175 + + Sbjct: 231 LAVA 234 Score = 40.5 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 16/137 (11%), Positives = 42/137 (30%), Gaps = 7/137 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISR 71 + S AG+P+ DA+ + S + +R+ + G L+++++ Sbjct: 265 QAALARFARSLATSYAAGVPLLDALGTVAKASGGELHQQAIQRLRQGMANGQGLNQAMAA 324 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + + G L + L + ++ + +E Sbjct: 325 EPLFPP------LLVQLVAIGESSGTLDQMLEKAASHYEEQVSQALDQLTSLLEPAIVLV 378 Query: 132 IIGSLPFCVSTLVYFTS 148 + + V + Sbjct: 379 LGLLVGGLVVAMYLPIF 395 >gi|326390174|ref|ZP_08211735.1| Type II secretion system F domain [Thermoanaerobacter ethanolicus JW 200] gi|325993822|gb|EGD52253.1| Type II secretion system F domain [Thermoanaerobacter ethanolicus JW 200] Length = 403 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 21/146 (14%), Positives = 49/146 (33%), Gaps = 6/146 (4%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSE 67 + D + AG+P+ A+A I Q + ++ V E G +LS+ Sbjct: 58 KKVKIKDIAVFCRQFATLINAGIPIVTALATIKEQVENKRLKRAISEVYEEVQKGRTLSD 117 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + P+ + ++ G L + + ++ + KV++ Sbjct: 118 AMKKYGDVFPM-----LLYNMVEVGEVSGTLDKVMNEMADHYEKENELNQKVKSALTYPL 172 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMN 153 + + + + T V G Sbjct: 173 IVSVVAVLVVIFLLTNVLPIFVGMFK 198 Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 7/134 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMVRYMP 77 + + AG+P+ A+ V+ + V +E + E GL LSE + R+ + P Sbjct: 271 FTRTLGTLISAGVPLMKAMEVVEKVVGNTVVAEGLGKAQEDIKKGLPLSEPLKRIGIFPP 330 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G+L L + + +E + + Sbjct: 331 M------VIQMISIGESSGSLDSILNKTADFYDGEVDTAVSQMTTLLEPLIIVMLATVVG 384 Query: 138 FCVSTLVYFTSPGY 151 F V ++V Y Sbjct: 385 FIVISIVMPLFQLY 398 >gi|34499267|ref|NP_903482.1| general secretion pathway protein F [Chromobacterium violaceum ATCC 12472] gi|34105118|gb|AAQ61474.1| general secretion pathway protein F [Chromobacterium violaceum ATCC 12472] Length = 403 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 47/163 (28%), Gaps = 7/163 (4%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + + + AGL + A+ + QS + + L Sbjct: 58 RRGLPRAELVMITEQLSTLLNAGLTLEKALTAVTEQSENARSRTVLAALR----SDILEG 113 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 S + + G+L ++ L+ L R+N + KV Sbjct: 114 KGFAQALSSAPGVFSPLYRSLVQAGEQSGHLDMVMSRLAEYLDKRQNTQQKVTLALAYPA 173 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + V+ L+ + P ++V + L A Sbjct: 174 ---VVTLVAILVVAGLMSYVVPQVVSVFAQTKQSLPFLTRALV 213 Score = 34.7 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 43/126 (34%), Gaps = 7/126 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V +G+P+ A+ G + P++ + G+SLS +++ ++ P Sbjct: 276 LSILVGSGVPLLTALETARGLMTMLPMQDAVADAMAKVREGVSLSRALNASRQFPP---- 331 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G LS L ++ K ME + G + V Sbjct: 332 --VLIHLISSGEASGTLSHMLDRAAQQQEQEVERKLATFTTLMEPLLILVMGGMVLLIVL 389 Query: 142 TLVYFT 147 ++ Sbjct: 390 AIMMPI 395 >gi|77166345|ref|YP_344870.1| general secretion pathway protein F [Nitrosococcus oceani ATCC 19707] gi|254435718|ref|ZP_05049225.1| Bacterial type II secretion system protein F domain [Nitrosococcus oceani AFC27] gi|76884659|gb|ABA59340.1| General secretion pathway protein F [Nitrosococcus oceani ATCC 19707] gi|207088829|gb|EDZ66101.1| Bacterial type II secretion system protein F domain [Nitrosococcus oceani AFC27] Length = 410 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 60/178 (33%), Gaps = 6/178 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQH 60 K L ++ ++ + +RAGLP+ A ++++ + PVR ++ E Sbjct: 59 KRLFGRKKTVRQNEVAVLTGELATLLRAGLPLDRAFSILMEIADDGPVRQLLSQLQEQVR 118 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+E++ S + + GG L L L+ + K +K V Sbjct: 119 GGSSLAEAMETQAET-----FSPLYISMIRAGEAGGALDVILGRLADFMERSKALKNAVT 173 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + + G + T V + +AA +L Sbjct: 174 SALIYPAILVGVAGLSVIILLTFVVPQFQQLFEDAGKALPVATQIVIAAGNLLQNYWW 231 >gi|187732930|ref|YP_001881748.1| general secretion pathway protein GspF [Shigella boydii CDC 3083-94] gi|187429922|gb|ACD09196.1| general secretion pathway protein GspF [Shigella boydii CDC 3083-94] Length = 407 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLAMLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVMLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMV 178 + + T V + L + L+ ++ A G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPSSTRALIAMSDALQASGVYW 229 >gi|327334809|gb|EGE76520.1| putative bacterial type II secretion system protein F domain protein [Propionibacterium acnes HL097PA1] Length = 249 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 5/148 (3%) Query: 7 KRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +R + P AL ++ ++ AGLP+ AV + P + RR+ + G+ Sbjct: 101 RRMEQHRAAQLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVPD 160 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S + + + ++ + +S G +SE L+ + L+ K + +A Sbjct: 161 SRAWNDLA---SVEVWRDPAQDVSRAVDSGEGISELLSAHAAQLQVAAAEKTEKRARKAG 217 Query: 126 AK-ASAWIIGSLPFCVSTLVYFTSPGYM 152 + LP + V G + Sbjct: 218 VDAIGPLVCCHLPAFLLVGVVPIIAGMV 245 >gi|300715324|ref|YP_003740127.1| outer membrane protein export (MTB) system (type II secretion system) [Erwinia billingiae Eb661] gi|299061160|emb|CAX58267.1| outer membrane protein export (MTB) system (Type II secretion system) [Erwinia billingiae Eb661] Length = 399 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 22/179 (12%), Positives = 51/179 (28%), Gaps = 10/179 (5%) Query: 1 MKHLIKKRTAKFLDDFPN---ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57 + KR + + ++AGL +S ++ ++ + P R +E Sbjct: 43 LSLSAAKRYRAREWQWAQKIAFFRQLATLLKAGLTLSASLNLLAEEHPHPGWQALFRQLE 102 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + Q + +L G + E L+ ++ ++ Sbjct: 103 NNVA----EGMPFSDALALWPQVFPPLFPALMYVGELTGRIDECCLQLACQQERQQQLQK 158 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 KV +I+ ++ F P +M+V + G+ Sbjct: 159 KVTKALRYPL---FILSLALLVSIGMLVFVLPEFMSVYQAFNAPLPAFTAGVIALSGGL 214 Score = 35.1 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 13/136 (9%), Positives = 40/136 (29%), Gaps = 8/136 (5%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + + +AGL + ++ + + + E + ++ ++ Sbjct: 265 LSRIFMTLALTQQAGLTLLQSLQAVEKTLTSLLWREAIQQLQQH-----IATGYPLYQAL 319 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 S + + G+L L L + D M ++ A ++ + Sbjct: 320 KQHPLFSPVCYQLIKVGEESGSLDSMLVRLGELHED---MTHELADNLAAALEPMMMVIT 376 Query: 136 LPFCVSTLVYFTSPGY 151 + ++ P + Sbjct: 377 GVLVGALVIAMYLPIF 392 >gi|187921509|ref|YP_001890541.1| type II secretion system protein [Burkholderia phytofirmans PsJN] gi|187719947|gb|ACD21170.1| type II secretion system protein [Burkholderia phytofirmans PsJN] Length = 293 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESIS 70 L P LD + +V AGL ++ A+ V + P+R EF V+ GL+ E++ Sbjct: 146 ILKHLPIYLDFLTLAVEAGLNINGAIQKAVEKGPEGPLRWEFEHVLRDLKSGLNRMEALY 205 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 RM + ++EV+ + ++G LS++L S R + +A+ QA+ K Sbjct: 206 RMDDRLRIKEVTNLVGTVVQAERMGSGLSKSLRFQSEQRRSERFQRAEKQAMEAPVKLVF 265 Query: 131 WIIGSLPFCVSTLVYF 146 ++ + ++ F Sbjct: 266 PLLVFIFPITFIVLGF 281 >gi|320656344|gb|EFX24251.1| hypothetical protein ECO7815_07074 [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 407 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 54/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHS 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + L+ ++ G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPATTRALIAMSDTLQASGVYW 229 >gi|16759139|ref|NP_454756.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140689|ref|NP_804031.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213420543|ref|ZP_03353609.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213427393|ref|ZP_03360143.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213612707|ref|ZP_03370533.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213648263|ref|ZP_03378316.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289823718|ref|ZP_06543330.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25297478|pir||AE0520 protein transport protein HofC STY0164 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501429|emb|CAD01301.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Typhi] gi|29136313|gb|AAO67880.1| transport protein HofC [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 400 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + +L G L+E L+R + ++ + V+ Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPA---I 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183 I+ V +++F P + + + LL + G L++ Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGPAWGWLIL 221 >gi|168213196|ref|ZP_02638821.1| bacterial type II secretion system protein F [Clostridium perfringens CPE str. F4969] gi|170715199|gb|EDT27381.1| bacterial type II secretion system protein F [Clostridium perfringens CPE str. F4969] Length = 401 Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 18/152 (11%), Positives = 50/152 (32%), Gaps = 9/152 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D + +GL + A+ +++ Q +R V G +L+ S+ + Sbjct: 62 KDIAVFCRQFYVMLDSGLSIGKALNILIEQCEKPKLREALIGVNGELKRGETLASSMRK- 120 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 T + + GNL L ++ ++ K+++ + + Sbjct: 121 ----RKDVFPNLLTSMIDAGERSGNLDIILKRMAEYYEKETKIRGKIKSAMIYPI---VL 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 ++ ++ F P ++ + + + Sbjct: 174 GVVAIIAITFILTFVMPTFVQMFEENNVDLPM 205 Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 43/134 (32%), Gaps = 7/134 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77 + +G+ + ++ ++ + + E +V E G L +SI M Sbjct: 270 FTRTMGIVSSSGMSLVTSIEIVASVVGNKIAEKELLKVKEKVLKGEGLGDSI------MN 323 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + + G+L L + D + K +E + + Sbjct: 324 IKIFPPMLASMVKIGEEAGSLDSILDKTADFYDDELEREIKTATALIEPSMIVLMGIIIG 383 Query: 138 FCVSTLVYFTSPGY 151 F + +++ Y Sbjct: 384 FLLISILTPMFKMY 397 >gi|328471389|gb|EGF42284.1| MSHA biogenesis protein MshG [Vibrio parahaemolyticus 10329] Length = 407 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 22/168 (13%), Positives = 51/168 (30%), Gaps = 8/168 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + +AG+P+ ++ ++ + E V+ G LS + Sbjct: 71 FSRQLFSLTKAGVPLLRSMRGLLQNCENKQLKEALEDVVSELSNGRGLSSA-----MQPH 125 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + S + + G L EAL L+ + +++A I Sbjct: 126 NKVFSPLFVSMINVGENTGRLDEALLQLANYYEQELETRKRIKAAMRYPTFVIVFITIAM 185 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM--VMRLMI 183 F ++ LV + + +A + + ++ M+ Sbjct: 186 FILNILVIPEFASMFTRFGVELPLPTRILIATSNFFVHYWGLLIAAMV 233 Score = 38.2 bits (87), Expect = 0.62, Method: Composition-based stats. Identities = 11/135 (8%), Positives = 36/135 (26%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 +++G+P++ ++A+ + + ++ + Sbjct: 268 RAQLSRFSRTFSLMLKSGVPLNQSLALAGEALGNRFLE-----NRILEMKAAIEAGSTIS 322 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 V + + + + G + E L +S + K +E + Sbjct: 323 VTAINSNIFTPLVIQMIAVGEETGRIDELLLEISDFYDREVDYDLKTLTARIEPLLLVIV 382 Query: 133 IGSLPFCVSTLVYFT 147 G + + Sbjct: 383 AGMVMVLALGIFLPM 397 >gi|320158388|ref|YP_004190766.1| type II/IV secretion system protein TadC, associated with Flp pilus assembly [Vibrio vulnificus MO6-24/O] gi|319933700|gb|ADV88563.1| type II/IV secretion system protein TadC, associated with Flp pilus assembly [Vibrio vulnificus MO6-24/O] Length = 292 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 55/150 (36%), Gaps = 4/150 (2%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQHLGLSLSE 67 P LD++ V G+ + + + + D + V + + + + Sbjct: 144 RHVSSRLPFLLDLMNVCVHTGMTIEATLEYLAKELQTVDKYLAFTVNVTVQRSKVIGIEK 203 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ +P E F + Q G ++ + L L+ +R M+ + + + AK Sbjct: 204 ALEEFYEMVPSSEAQSFVMTLVQSLQFGSSVGQVLGTLATDIRQINMMELEEKIGKLGAK 263 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 S +I + + +PG M +L + Sbjct: 264 MSIPMIVFIMVPIII--LIIAPGIMRMLTD 291 >gi|307610222|emb|CBW99780.1| pilus assembly protein PilC [Legionella pneumophila 130b] Length = 406 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 24/187 (12%), Positives = 57/187 (30%), Gaps = 14/187 (7%) Query: 2 KHLIKKRTAKFLD--------DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEF 52 +IKKR F D + + +G+P+ A ++ QS+ ++ Sbjct: 47 NKVIKKRKPLFDRKNKKITQADITVFSRQLATMIESGIPLVQAFDIVAKGQSNKRLKDLI 106 Query: 53 RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112 + GL+L+ES+ + + + + G+L L ++ Sbjct: 107 ETIKHDIETGLTLAESLIKHPL-----YFNELFCNLVDAGEKSGSLDIMLDKVATYKEKI 161 Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 + +K K++ A + + + V D + + Sbjct: 162 EIIKKKIKKALTYPIAVMVVALLVTAGLLIYVVPQFESLFKGFGADLPAMTRAVITMSEF 221 Query: 173 LIGIMVM 179 + + Sbjct: 222 MQAYWYI 228 Score = 40.1 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 14/136 (10%), Positives = 41/136 (30%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRM 72 + + AGLP+ +A+ + G + + + ++ E G + ++ Sbjct: 271 AAIARFARTLSITFAAGLPLVEALKSVAGATGNIIYAKATDKIREEVATGQQMFTAMEN- 329 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L + L+ ++ + N + +E + + Sbjct: 330 -----THLFPNMVIQMVAIGEESGALEKMLSKVADFYEEEVNNAVDALSSLLEPIIMSIL 384 Query: 133 IGSLPFCVSTLVYFTS 148 + V + Sbjct: 385 GILVGGLVVAMYLPIF 400 >gi|229821270|ref|YP_002882796.1| type II secretion system protein [Beutenbergia cavernae DSM 12333] gi|229567183|gb|ACQ81034.1| type II secretion system protein [Beutenbergia cavernae DSM 12333] Length = 315 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 57/146 (39%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++ R A+ + +FP +++ +V AG A+ + + + +E R + Sbjct: 160 LTRQVRAREARIMAEFPTVAELLALAVSAGEAPVAALDRVARSTQGELSAELGRTLADVR 219 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +++ ++ + R L VS F+ ++V + G L++ L + RD + Sbjct: 220 AGATMAGALEGLARRTDLPAVSRFADGVAVAIERGSPLADVLRAQAADARDAGKRELMES 279 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146 E ++ + F Sbjct: 280 GGRKEVAMMIPVVFLVLPVTVVFALF 305 >gi|218701735|ref|YP_002409364.1| General secretion pathway protein F [Escherichia coli IAI39] gi|227887665|ref|ZP_04005470.1| general secretion pathway protein GspF [Escherichia coli 83972] gi|300973521|ref|ZP_07172235.1| general secretion pathway protein F [Escherichia coli MS 45-1] gi|301019907|ref|ZP_07184042.1| general secretion pathway protein F [Escherichia coli MS 196-1] gi|218371721|emb|CAR19571.1| General secretion pathway protein F [Escherichia coli IAI39] gi|227835061|gb|EEJ45527.1| general secretion pathway protein GspF [Escherichia coli 83972] gi|299882005|gb|EFI90216.1| general secretion pathway protein F [Escherichia coli MS 196-1] gi|300410737|gb|EFJ94275.1| general secretion pathway protein F [Escherichia coli MS 45-1] gi|307555053|gb|ADN47828.1| general secretion pathway protein GspF [Escherichia coli ABU 83972] gi|315291307|gb|EFU50667.1| general secretion pathway protein F [Escherichia coli MS 153-1] Length = 407 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 56/167 (33%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+++K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQHLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + ML+ ++ G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDTLQTSGVYW 229 >gi|218547561|ref|YP_002381352.1| type IV pilin biogenesis protein [Escherichia fergusonii ATCC 35469] gi|218355102|emb|CAQ87709.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia fergusonii ATCC 35469] Length = 411 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 58/172 (33%), Gaps = 12/172 (6%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ GQ + + + + Sbjct: 72 AEVIHQLATLLKAGLTLSEGLALLAGQHPSKQWQALLQTLAHELEQGN----ALSRALTQ 127 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + + +L G L E L+R + + + KV+ I+ Sbjct: 128 WSEVFPPLYQAMIRTGELTGKLDECCFELARQQKAQHLLAEKVKKALRYPL---IILTLA 184 Query: 137 PFCVSTLVYFTSPGYMNVL--INDP---RGHMLLGVAAAFMLIGIMVMRLMI 183 V +++F P + + N P ++ A G ++M L++ Sbjct: 185 IVVVVAMLHFVLPEFAAIYKTFNTPLPALTQGVMATADFISQWGGLIMALIV 236 >gi|221134991|ref|ZP_03561294.1| general secretion pathway protein F [Glaciecola sp. HTCC2999] Length = 408 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 20/171 (11%), Positives = 53/171 (30%), Gaps = 6/171 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + + V A LP+ +A+ + QS P + + + Sbjct: 69 ELSLLTRQLATLVEASLPIEEALLAVAEQSEKPRQKNMMMAVR----SKVVEGFGLAEAL 124 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + G+L L L+ +R+ +++V + + Sbjct: 125 GDFPSVFDTLFIAMVAAGEKSGHLDIVLNRLADYTENREKTRSQVVQAMIYPALMMFFAV 184 Query: 135 SLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVMRLMI 183 ++ + T+V + P +++ ++ + V+ L+I Sbjct: 185 AITVLLLTVVVPKIVTQFQHMGQGLPPITQLVMDISTFLQASWMWVVGLLI 235 >gi|218710510|ref|YP_002418131.1| type IV pilin assembly protein pilC [Vibrio splendidus LGP32] gi|218323529|emb|CAV19719.1| Type IV pilin assembly protein pilC [Vibrio splendidus LGP32] Length = 408 Score = 58.2 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 50/148 (33%), Gaps = 6/148 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D + + G+P+ A+ ++ ++S + G +S+++ Sbjct: 68 KDITILTRQLATMLATGVPIVQAIKLVSDNHRKAEMKSILLHICRGVEAGTPISKAMRTA 127 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + T + +L GNL++ L+ + +K+KV + + Sbjct: 128 STH-----FDDLYTDLVATGELSGNLAQVFERLATYREKSEQLKSKVIKALIYPTMVVAV 182 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR 160 ++ + + T+V + D Sbjct: 183 ALTVSYLMLTMVIPEFESMFSSFGADLP 210 Score = 36.3 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 12/131 (9%), Positives = 37/131 (28%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + S +G+P+ ++ + + V G+ + ++ Sbjct: 277 FSRTLSTSFSSGIPILTSLKTTAKTAGNLHYESAIIEVHRETAAGMPMYIAMRN------ 330 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + GNL + L ++ I + +E ++ ++ Sbjct: 331 TDAFPEMVLQMVMIGEESGNLDDMLNKIASIYEFEVDNTVDNLGKILEPLIIVFLGTAIG 390 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 391 GLVVAMYLPIF 401 >gi|169347023|ref|ZP_02865965.1| bacterial type II secretion system protein F [Clostridium perfringens C str. JGS1495] gi|169296706|gb|EDS78835.1| bacterial type II secretion system protein F [Clostridium perfringens C str. JGS1495] Length = 401 Score = 58.2 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 18/152 (11%), Positives = 50/152 (32%), Gaps = 9/152 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D + +GL + A+ +++ Q +R V G +L+ S+ + Sbjct: 62 KDIAVFCRQFYVMLDSGLSIGKALNILIEQCEKPKLREALIGVNGELKRGETLASSMRK- 120 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 T + + GNL L ++ ++ K+++ + + Sbjct: 121 ----RKDVFPNLLTSMIDAGERSGNLDIILKRMADYYEKETKIRGKIKSAMIYPI---VL 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 ++ ++ F P ++ + + + Sbjct: 174 GVVAIIAITFILTFVMPTFVQMFEENNVDLPM 205 Score = 38.9 bits (89), Expect = 0.29, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 43/134 (32%), Gaps = 7/134 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77 + +G+ + ++ ++ + + E +V E G L +SI M Sbjct: 270 FTRTMGIVSSSGMSLVTSIEIVASVVGNKIAEKELLKVKEKVLKGEGLGDSI------MN 323 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + + G+L L + D + K +E + + Sbjct: 324 IKIFPPMLASMVKIGEEAGSLDSILDKTADFYDDELEREIKTATALIEPSMIVLMGIIIG 383 Query: 138 FCVSTLVYFTSPGY 151 F + +++ Y Sbjct: 384 FLLISILTPMFKMY 397 >gi|152968739|ref|YP_001333848.1| pullulanase F protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|330010539|ref|ZP_08306773.1| general secretion pathway protein F [Klebsiella sp. MS 92-3] gi|150953588|gb|ABR75618.1| Pullulanase F protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328534524|gb|EGF61111.1| general secretion pathway protein F [Klebsiella sp. MS 92-3] Length = 404 Score = 58.2 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 17/143 (11%), Positives = 40/143 (27%), Gaps = 7/143 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D + V AG+P+ A+ + Q R + L Sbjct: 65 DLALLTRQLATLVAAGIPLEKALDAVAQQCE----KPSLRTLMAGVRSKVLEGHSLAEAM 120 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + G+L L L+ R+ ++A++ + + Sbjct: 121 RGYPACFDGLFCAMVAAGETSGHLDGVLNRLADYTEQRQQLRARLLQAMIYPI---VLTL 177 Query: 135 SLPFCVSTLVYFTSPGYMNVLIN 157 ++ L+ P + ++ Sbjct: 178 VAISVIAILLSTVVPKVVEQFVH 200 >gi|291284341|ref|YP_003501159.1| hypothetical protein G2583_3684 [Escherichia coli O55:H7 str. CB9615] gi|290764214|gb|ADD58175.1| Hypothetical type II secretion protein [Escherichia coli O55:H7 str. CB9615] gi|320661715|gb|EFX29123.1| hypothetical protein ECO5905_11598 [Escherichia coli O55:H7 str. USDA 5905] Length = 407 Score = 58.2 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 54/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHS 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 + + T V + L + L+ ++ G+ Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPATTRALIAMSDTLQASGVYW 229 >gi|269792663|ref|YP_003317567.1| type II secretion system protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100298|gb|ACZ19285.1| type II secretion system protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 401 Score = 58.2 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 10/163 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 D A + + AG+ V+ A+ +I Q + + F V G L+++++ Sbjct: 63 KDVALAFRQLATMISAGITVAGALGIIKEQVQNRALAKAFDNVSRGVMSGRGLADAMASE 122 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P I + GG L +L L+ +L ++ ++ K+ + + + Sbjct: 123 STFSP------LVVSIVRAGEEGGVLDLSLQRLATLLEKQEALRRKISSALVYPM---VV 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + + LV+ P + V L+ G Sbjct: 174 LCICVMVLGILVFVIIPRFSLVFNQMGIELPLITRIVFAFANG 216 >gi|262191507|ref|ZP_06049691.1| MSHA biogenesis protein MshG [Vibrio cholerae CT 5369-93] gi|262032605|gb|EEY51159.1| MSHA biogenesis protein MshG [Vibrio cholerae CT 5369-93] Length = 407 Score = 58.2 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 16/165 (9%), Positives = 43/165 (26%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72 + + +AG+P+ ++ + + V G +LS Sbjct: 67 EVLVIFCRQMFSLTKAGVPLLRSMRGLSQNCHNKQLKAALDSVCNELTNGRNLS-----A 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + S + + G L +AL L+ + +++ Sbjct: 122 SMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITF 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + F ++ V + D + + + + Sbjct: 182 VLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYW 226 Score = 41.3 bits (95), Expect = 0.061, Method: Composition-based stats. Identities = 10/135 (7%), Positives = 35/135 (25%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + AG+P++ ++A+ + + + + ++ Sbjct: 269 RAQLSRFARTFSLMLSAGVPLNQSLALSAEAIDNKFLEQRIL-----EMKSQIESGVAVS 323 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G + E L +S + K +E ++ Sbjct: 324 ATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLVFV 383 Query: 133 IGSLPFCVSTLVYFT 147 + + Sbjct: 384 AAMVLVLALGIFLPM 398 >gi|28899474|ref|NP_799079.1| MSHA biogenesis protein MshG [Vibrio parahaemolyticus RIMD 2210633] gi|153840088|ref|ZP_01992755.1| msha biogenesis protein mshg [Vibrio parahaemolyticus AQ3810] gi|260363358|ref|ZP_05776210.1| msha biogenesis protein mshg [Vibrio parahaemolyticus K5030] gi|260879292|ref|ZP_05891647.1| msha biogenesis protein mshg [Vibrio parahaemolyticus AN-5034] gi|260897286|ref|ZP_05905782.1| msha biogenesis protein mshg [Vibrio parahaemolyticus Peru-466] gi|260902471|ref|ZP_05910866.1| msha biogenesis protein mshg [Vibrio parahaemolyticus AQ4037] gi|28807710|dbj|BAC60963.1| MSHA biogenesis protein MshG [Vibrio parahaemolyticus RIMD 2210633] gi|149746320|gb|EDM57383.1| msha biogenesis protein mshg [Vibrio parahaemolyticus AQ3810] gi|308087228|gb|EFO36923.1| msha biogenesis protein mshg [Vibrio parahaemolyticus Peru-466] gi|308093095|gb|EFO42790.1| msha biogenesis protein mshg [Vibrio parahaemolyticus AN-5034] gi|308109564|gb|EFO47104.1| msha biogenesis protein mshg [Vibrio parahaemolyticus AQ4037] gi|308111211|gb|EFO48751.1| msha biogenesis protein mshg [Vibrio parahaemolyticus K5030] Length = 407 Score = 58.2 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 22/168 (13%), Positives = 51/168 (30%), Gaps = 8/168 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + +AG+P+ ++ ++ + E V+ G LS + Sbjct: 71 FSRQLFSLTKAGVPLLRSMRGLLQNCENKQLKEALEDVVSELSNGRGLSSA-----MQPH 125 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + S + + G L EAL L+ + +++A I Sbjct: 126 NKVFSPLFVSMINVGENTGRLDEALLQLANYYEQELETRKRIKAAMRYPTFVIVFITIAM 185 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM--VMRLMI 183 F ++ LV + + +A + + ++ M+ Sbjct: 186 FILNILVIPEFASMFTRFGVELPLPTRILIATSNFFVHYWGLLIAAMV 233 Score = 38.2 bits (87), Expect = 0.60, Method: Composition-based stats. Identities = 11/135 (8%), Positives = 36/135 (26%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 +++G+P++ ++A+ + + ++ + Sbjct: 268 RAQLSRFARTFSLMLKSGVPLNQSLALAGEALGNRFLE-----NRILEMKAAIEAGSTIS 322 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 V + + + + G + E L +S + K +E + Sbjct: 323 VTAINSNIFTPLVIQMIAVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPLLLVIV 382 Query: 133 IGSLPFCVSTLVYFT 147 G + + Sbjct: 383 AGMVMVLALGIFLPM 397 >gi|329848233|ref|ZP_08263261.1| bacterial type II secretion system protein F domain protein [Asticcacaulis biprosthecum C19] gi|328843296|gb|EGF92865.1| bacterial type II secretion system protein F domain protein [Asticcacaulis biprosthecum C19] Length = 403 Score = 58.2 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 20/162 (12%), Positives = 55/162 (33%), Gaps = 12/162 (7%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D L + +RAG + A+ V+ S +R +++ L + Sbjct: 70 DLEEFLRNLAVLLRAGADIRTALGVVGSDSHPQIRDVSQKI---------LGGASLDAAL 120 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + G+++ L +++L R+ ++ ++ ++ Sbjct: 121 GHVIPPGLTHLRGLIAAGEARGDVASGLDGAAQVLTTRRKIRQQLFEALSYPV---FVFA 177 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + +S ++ P +L + R + F+ G+ Sbjct: 178 TALAALSIILLVVVPAIAPLLSDTGRDPPVYFAIIVFLSEGL 219 >gi|295129801|ref|YP_003580464.1| hypothetical protein HMPREF0675_3278 [Propionibacterium acnes SK137] gi|291376757|gb|ADE00612.1| conserved hypothetical protein [Propionibacterium acnes SK137] gi|313772773|gb|EFS38739.1| conserved hypothetical protein [Propionibacterium acnes HL074PA1] gi|313810913|gb|EFS48627.1| conserved hypothetical protein [Propionibacterium acnes HL083PA1] gi|313831678|gb|EFS69392.1| conserved hypothetical protein [Propionibacterium acnes HL007PA1] gi|313834347|gb|EFS72061.1| conserved hypothetical protein [Propionibacterium acnes HL056PA1] gi|313840369|gb|EFS78083.1| conserved hypothetical protein [Propionibacterium acnes HL086PA1] gi|314974781|gb|EFT18876.1| conserved hypothetical protein [Propionibacterium acnes HL053PA1] gi|314977019|gb|EFT21114.1| conserved hypothetical protein [Propionibacterium acnes HL045PA1] gi|314985440|gb|EFT29532.1| conserved hypothetical protein [Propionibacterium acnes HL005PA1] gi|315082166|gb|EFT54142.1| conserved hypothetical protein [Propionibacterium acnes HL078PA1] gi|315097274|gb|EFT69250.1| conserved hypothetical protein [Propionibacterium acnes HL038PA1] gi|327331301|gb|EGE73040.1| hypothetical protein HMPREF9338_00673 [Propionibacterium acnes HL096PA2] gi|327447320|gb|EGE93974.1| hypothetical protein HMPREF9570_01603 [Propionibacterium acnes HL043PA1] gi|327450234|gb|EGE96888.1| hypothetical protein HMPREF9571_00214 [Propionibacterium acnes HL043PA2] gi|328761170|gb|EGF74713.1| hypothetical protein HMPREF9343_01124 [Propionibacterium acnes HL099PA1] Length = 256 Score = 58.2 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 59/171 (34%), Gaps = 5/171 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + A + V G S A+ + + Q +G S+S+++ Sbjct: 83 REVARATRALAGRVSVGEIPSVALEHVADDVE-----VLAQARRAQAVGGSVSDALIATS 137 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + + + + G L+ A +++ R ++A + + A+AS I+ Sbjct: 138 RQPGMAGLVPLAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIM 197 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 G LP + + L G L + +G++ + + Sbjct: 198 GLLPLVGLLMGHVVGAHPTVFLTTTWLGRACLLGSTLLACVGVLWSESLAD 248 >gi|197250502|ref|YP_002145129.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197214205|gb|ACH51602.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 400 Score = 58.2 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + +L G L+E L+R + ++ + V+ Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPV---I 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183 I+ V +++F P + + + LL + G L++ Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSTWGWLIL 221 >gi|324112483|gb|EGC06460.1| type II secretion system protein F [Escherichia fergusonii B253] gi|325496039|gb|EGC93898.1| type IV pilin biogenesis protein [Escherichia fergusonii ECD227] Length = 400 Score = 58.2 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 58/172 (33%), Gaps = 12/172 (6%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ GQ + + + + Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAGQHPSEQWQALLQTLAHELEQGN----ALSRALTQ 116 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + + +L G L E L+R + + + KV+ I+ Sbjct: 117 WSEVFPPLYQAMIRTGELTGKLDECCFELARQQKAQHLLAEKVKKALRYPL---IILTLA 173 Query: 137 PFCVSTLVYFTSPGYMNVL--INDP---RGHMLLGVAAAFMLIGIMVMRLMI 183 V +++F P + + N P ++ A G ++M L++ Sbjct: 174 IVVVVAMLHFVLPEFAAIYKTFNTPLPALTQGVMATADFISQWGGLIMALIV 225 >gi|261250241|ref|ZP_05942817.1| type 4 fimbrial assembly protein PilC [Vibrio orientalis CIP 102891] gi|260939357|gb|EEX95343.1| type 4 fimbrial assembly protein PilC [Vibrio orientalis CIP 102891] Length = 408 Score = 58.2 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 54/169 (31%), Gaps = 14/169 (8%) Query: 1 MKHLIKKRTAKFLD--------DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSE 51 ++ L KR + F D + + G+P+ A+ ++ Q + S Sbjct: 47 IRKLKVKRVSAFTRLAQRVKTKDITLLTRQLATMLATGVPIIHALKLVADNQRKAEMTSI 106 Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111 ++ + G +S+ + + + + GNL++A ++ Sbjct: 107 LAQISKGIESGTPISKVMHATSSH-----FDRLYIDLVATGEQTGNLADAFERIASYREK 161 Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 + ++AKV + + + + T+V D Sbjct: 162 SERLRAKVIKALIYPCMVVTTALVVSYLMLTMVIPQFESMFKGFGADLP 210 Score = 37.8 bits (86), Expect = 0.78, Method: Composition-based stats. Identities = 13/131 (9%), Positives = 36/131 (27%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + S+ AG+P+ + + + + RV + G+ + ++ Sbjct: 277 FSRTLATSLSAGIPILSCLTSSAKTADNIYYQQAIERVYDDTAAGVPIYIAMRNA----- 331 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L + L ++ I +E + + Sbjct: 332 -HCFPEMILQMVMIGEESGRLDDMLNKVASIYEFEVEDTVDNLGKVLEPLIIVLLGIVVG 390 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 391 GLVVAMYLPVF 401 >gi|255316490|ref|ZP_05358073.1| hypothetical protein CdifQCD-7_19177 [Clostridium difficile QCD-76w55] Length = 317 Score = 58.2 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 72/182 (39%), Gaps = 4/182 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQ 59 K L KR K + + II+ + +S ++ + Q S+P+ SE ++ + Sbjct: 127 KTLSNKRVTKMESQIGSFIRIIIERYKINKNISKSLVETLPDFQGSEPLYSELKKSVVDI 186 Query: 60 HLGLSLSESISRMVRYMPLQEVS--FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 LG+ + E +S + R + + +S + + L D + +K Sbjct: 187 DLGIPIEEVLSSLARRTGSKYLKLFSNYYEVSSMLSSQESKIKILTTSFNQYEDNRIIKR 246 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++ M ++I+ + F S GY++ +IN+ G M L +L+ + Sbjct: 247 DLRKEIMGPVRESYIMVFAIPVLMLYQSFVSDGYLDFMINEKIGQMGLTGIFVSILLCVW 306 Query: 178 VM 179 + Sbjct: 307 FI 308 >gi|113968503|ref|YP_732296.1| general secretion pathway protein F [Shewanella sp. MR-4] gi|114045666|ref|YP_736216.1| general secretion pathway protein F [Shewanella sp. MR-7] gi|113883187|gb|ABI37239.1| general secretion pathway protein F [Shewanella sp. MR-4] gi|113887108|gb|ABI41159.1| general secretion pathway protein F [Shewanella sp. MR-7] Length = 407 Score = 58.2 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 6/171 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 + I V AGLP+ + + + Q + S V G SL++S++ Sbjct: 67 AELALITRQIATLVAAGLPIEECLKAVGQQCEKARLASMIMAVRSRVVEGYSLADSLAEF 126 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G+L L L+ R+ +K+K+Q + + Sbjct: 127 P-----HIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKLQQAMIYPIMLTIV 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + V G + + +AA+ + ++ ++I Sbjct: 182 AIGVVSVLLAAVVPKVVGQFEHMGAELPATTRFLIAASDFVQSYGLLVVLI 232 >gi|27364988|ref|NP_760516.1| type 4 fimbrial assembly protein pilC [Vibrio vulnificus CMCP6] gi|27361134|gb|AAO10043.1| Type 4 fimbrial assembly protein pilC [Vibrio vulnificus CMCP6] Length = 408 Score = 58.2 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 16/154 (10%), Positives = 45/154 (29%), Gaps = 9/154 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D + + G+P+ ++ ++ ++S V + G LS+++ Sbjct: 68 KDITLLTRQLATMLTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTPLSKALRSA 127 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + GNL + L+ + ++AKV + + Sbjct: 128 S-----PQFDGIYVDLVATGEQSGNLDQVFERLAFYREKNEQLRAKVIKALIYP---CMV 179 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 + ++ P + + Sbjct: 180 VLVALGVSYLMLTKVIPEFRKMFTGFGAELPWFT 213 Score = 35.9 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 11/136 (8%), Positives = 37/136 (27%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + S AG+P+ ++ + + + V G+ + ++ Sbjct: 272 AAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAAGMPMYIAMRN- 330 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G + + L ++ I + +E ++ Sbjct: 331 -----SLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFL 385 Query: 133 IGSLPFCVSTLVYFTS 148 + V+ + Sbjct: 386 GVVVGGLVTAMYLPIF 401 >gi|89075292|ref|ZP_01161719.1| putative MSHA biogenesis protein MshG [Photobacterium sp. SKA34] gi|89048973|gb|EAR54541.1| putative MSHA biogenesis protein MshG [Photobacterium sp. SKA34] Length = 408 Score = 58.2 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 17/171 (9%), Positives = 44/171 (25%), Gaps = 9/171 (5%) Query: 12 FLDDFPN-----ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 F P + +AG+P+ A + +S P+ + Sbjct: 60 FQAQLPLEVLVIFCRQLYSLTKAGVPLLRAFKGLSQSASHPLLKTTLEALTLDLTNGR-- 117 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + + S + + G L + L L+ N + ++++ Sbjct: 118 --ALSVAMQQHPRVFSRLFISLIHVGENTGRLDQVLLQLANYYEQEVNTRRQIKSAMRYP 175 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 I ++T V + + + + + + Sbjct: 176 TFVLTAIVIAMGILNTKVIPQFASMFSRFGVELPWPTRVLIGTSNFFVHYW 226 Score = 44.0 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 12/135 (8%), Positives = 31/135 (22%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 +RAG+P++ A+ + + + + S Sbjct: 269 RAQMARFARTFSLMIRAGVPLNQAIQMAAESLGNRFLE-----NRLIEMKQGIEGGSSIS 323 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G + E L ++ K +E + Sbjct: 324 STATKSGVFTPLVLQMIAVGEETGQVDELLLEVADFYDREVEYDLKTLTARIEPIMLVVV 383 Query: 133 IGSLPFCVSTLVYFT 147 G + + Sbjct: 384 AGMVLLLALGIFLPM 398 >gi|86148307|ref|ZP_01066602.1| type IV pilin biogenesis protein PilC [Vibrio sp. MED222] gi|85833932|gb|EAQ52095.1| type IV pilin biogenesis protein PilC [Vibrio sp. MED222] Length = 408 Score = 58.2 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 50/148 (33%), Gaps = 6/148 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D + + G+P+ A+ ++ ++S + G +S+++ Sbjct: 68 KDITILTRQLATMLATGVPIVQAIKLVSDNHRKAEMKSILLHICRGVEAGTPISKAMRTA 127 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + T + +L GNL++ L+ + +K+KV + + Sbjct: 128 SSH-----FDDLYTDLVATGELSGNLAQVFERLATYREKSEQLKSKVIKALIYPTMVVAV 182 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR 160 ++ + + T+V + D Sbjct: 183 ALTVSYLMLTMVIPEFESMFSGFGADLP 210 Score = 36.3 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 12/131 (9%), Positives = 37/131 (28%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + S +G+P+ ++ + + V G+ + ++ Sbjct: 277 FSRTLSTSFSSGIPILTSLKTTAKTAGNLHYESAIIEVHRETAAGMPMYIAMRN------ 330 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + GNL + L ++ I + +E ++ ++ Sbjct: 331 TDAFPEMVLQMVMIGEESGNLDDMLNKIASIYEFEVDNTVDNLGKILEPLIIVFLGTAIG 390 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 391 GLVVAMYLPIF 401 >gi|95931257|ref|ZP_01313976.1| General secretion pathway protein F [Desulfuromonas acetoxidans DSM 684] gi|95132693|gb|EAT14373.1| General secretion pathway protein F [Desulfuromonas acetoxidans DSM 684] Length = 404 Score = 58.2 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 59/157 (37%), Gaps = 6/157 (3%) Query: 28 RAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 +AG+P+ +A+ +V Q +P + +V E G SL ++++ R P Sbjct: 79 QAGVPLDEALQSVVEQVENPAQARLYTQVREEVRQGSSLFQALAEQGRSFPDLYQR---- 134 Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 + + G L + L L+ L ++ ++++ + A + + + + V Sbjct: 135 -MVEVGENSGTLDQVLLRLADFLEEQARLRSRTVSALAYPVLMAIVGVGVLLFLLSFVVP 193 Query: 147 TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + L L + + ++ + ++ Sbjct: 194 KITRMLTDLGQALPLPTRLLITTSDLISAYGWLVALL 230 Score = 33.9 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 13/140 (9%), Positives = 38/140 (27%), Gaps = 7/140 (5%) Query: 11 KFLDDFPN--ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 + + + + +G+P+ A+ + S + ++ R + Sbjct: 263 RIQREIATARFSRTLGTLLHSGVPLLKALEI----SCGLLSNKVLRTAVETTSLEVREGA 318 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 ++ + G L E L ++ + + +E Sbjct: 319 SLAEP-LKRSGVFPPLLAQMTAVGERSGTLEEMLIKVADSQDRQVEITLAGLLSLLEPLM 377 Query: 129 SAWIIGSLPFCVSTLVYFTS 148 + G + F V ++ Sbjct: 378 ILAMGGIIGFIVLAVLLPIF 397 >gi|300088313|ref|YP_003758835.1| type II secretion system F domain-containing protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528046|gb|ADJ26514.1| Type II secretion system F domain protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 401 Score = 58.2 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 21/159 (13%), Positives = 51/159 (32%), Gaps = 6/159 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMVRYMP 77 + + +G + A+ ++ Q+++ V G SLS ++S+ + Sbjct: 68 FSRQLALLLESGTDIVTALELLQEQTTNKTFRTTLGHVANDIRGGSSLSGAMSKHPKVFS 127 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + GGNL L N++ L+ + K+++ A + + Sbjct: 128 PLFHR-----VLSAGEQGGNLEVVLRNMADFLQRMNETRKKIKSALTYPIVVAVVAVIVV 182 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + V T L + + ++ Sbjct: 183 AVLMIFVLPTFTDLYRQLGTELPTATKILISVTDFSTAY 221 Score = 33.9 bits (76), Expect = 9.5, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 46/151 (30%), Gaps = 6/151 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K + R + + A I +AGLP+ + + +S+ + SE Sbjct: 254 LKMPVIGRIIQLSE-LSRASQTIALLFKAGLPLPEIIVQAKNATSNKIVSEALE-----E 307 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + L + + + G L + L+ ++ + + K Sbjct: 308 VQKELIRGEGISGPMARRKVFLPMMVQMVGVGEETGKLDDTLSTVAHTYDMESDDRIKGA 367 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 ++ + I + F LV Y Sbjct: 368 IDLIQPAMTVIIGIIVAFIAVALVSSMYSMY 398 >gi|313822020|gb|EFS59734.1| type II secretion system F domain protein [Propionibacterium acnes HL036PA1] gi|314926542|gb|EFS90373.1| type II secretion system F domain protein [Propionibacterium acnes HL036PA3] Length = 249 Score = 58.2 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 5/148 (3%) Query: 7 KRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +R + P AL ++ ++ AGLP+ AV + P + RR+ + G+ Sbjct: 101 RRMEQHRAAQLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVPD 160 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S + + + ++ + +S G +SE L+ + L+ K + +A Sbjct: 161 SRAWNDLA---SVEVWRDPAQDVSRAVDSGEGISELLSAHAAQLQVAAAEKTEKKARKAG 217 Query: 126 AK-ASAWIIGSLPFCVSTLVYFTSPGYM 152 + LP V G + Sbjct: 218 VDAIGPLVCCHLPAFSLVGVVPIIAGMV 245 >gi|168216750|ref|ZP_02642375.1| bacterial type II secretion system protein F [Clostridium perfringens NCTC 8239] gi|182381171|gb|EDT78650.1| bacterial type II secretion system protein F [Clostridium perfringens NCTC 8239] Length = 401 Score = 58.2 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 18/152 (11%), Positives = 50/152 (32%), Gaps = 9/152 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D + +GL + A+ +++ Q +R V G +L+ S+ + Sbjct: 62 KDIAVFCRQFYVMLDSGLSIGKALNILIEQCEKPKLREALIGVNGELKRGETLASSMRK- 120 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 T + + GNL L ++ ++ K+++ + + Sbjct: 121 ----RKDVFPNLLTSMIDAGERSGNLDIILKRMAEYYEKETKIRGKIKSAMIYPI---VL 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 ++ ++ F P ++ + + + Sbjct: 174 GVVAIIAITFILTFVMPTFVQMFEENNVDLPM 205 Score = 38.9 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 43/134 (32%), Gaps = 7/134 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77 + +G+ + ++ ++ + + E +V E G L +SI M Sbjct: 270 FTRTMGIVSSSGMSLVTSIEIVASVVGNKIAEKELLKVKEKVLKGEGLGDSI------MN 323 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + + G+L L + D + K +E + + Sbjct: 324 IKIFPPMLASMVKIGEEAGSLDSILDKTADFYDDELEREIKTATALIEPSMIVLMGIIIG 383 Query: 138 FCVSTLVYFTSPGY 151 F + +++ Y Sbjct: 384 FLLISILTPMFKMY 397 >gi|320333779|ref|YP_004170490.1| type II secretion system F domain-containing protein [Deinococcus maricopensis DSM 21211] gi|319755068|gb|ADV66825.1| Type II secretion system F domain protein [Deinococcus maricopensis DSM 21211] Length = 406 Score = 58.2 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 52/149 (34%), Gaps = 9/149 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P+ ++A++ Q + R + GL LSE+IS+ + Sbjct: 71 FSRQLATLINAGVPLVQSLAIMQRQIEHKGFQKVVREMRTDVEGGLPLSEAISKHPK--- 127 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 S + + G L + +S L + + K+++ ++ Sbjct: 128 --VFSRLYINLVRAGETSGTLDAIMDRISFFLEKQLALTGKIKSALTYPV---IVLVFAI 182 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 L+ P + +VL + L Sbjct: 183 LITYFLLTTIVPQFASVLTSLNAPLPALT 211 >gi|312199821|ref|YP_004019882.1| type II secretion system F [Frankia sp. EuI1c] gi|311231157|gb|ADP84012.1| Type II secretion system F domain protein [Frankia sp. EuI1c] Length = 323 Score = 58.2 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 60/157 (38%), Gaps = 6/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I+ R + L +FP +++ +V AG A+ + + + E R + Sbjct: 167 LTRAIRAREDRMLMEFPTIAELLALAVTAGESPVGALERVARLTHGELGYELRLALADAR 226 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +L +++ + L ++ F ++V + G L++ L + +R+ + Sbjct: 227 AGATLVQALEGIATRTTLGSLARFVDGMAVAIERGTPLADVLRAQAVDVREAG------R 280 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 +E+ I +P L + L++ Sbjct: 281 RQLLESGGRKEIAMMVPVVFLVLPTTVIFAFYPALVS 317 >gi|159903363|ref|YP_001550707.1| Type II secretory pathway, component PulF [Prochlorococcus marinus str. MIT 9211] gi|159888539|gb|ABX08753.1| Type II secretory pathway, component PulF [Prochlorococcus marinus str. MIT 9211] Length = 385 Score = 58.2 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 22/178 (12%), Positives = 59/178 (33%), Gaps = 8/178 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71 D + +++G+P++ + ++ + + + G LS + Sbjct: 43 QKDLLVFFRQLSVMLQSGVPLAQGLELLSENMINKKFAACIFDISRRLSGGQELSSCLRI 102 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 R + + + GG LS+ L ++ +L +K ++ + Sbjct: 103 YPRIFAP-----ITIGLIEAGEAGGILSKVLERIALLLEANAKLKGQITGALVYPLVVLV 157 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM--LLGVAAAFMLIGIMVMRLMINFDV 187 + ++ + + T + L + G +L ++ G +V + F V Sbjct: 158 LAVTISLALLIFIVPTFKELFDGLGAELPGLTAFMLLLSNIVTSTGFLVGAPITIFIV 215 >gi|86739494|ref|YP_479894.1| type II secretion system protein [Frankia sp. CcI3] gi|86566356|gb|ABD10165.1| type II secretion system protein [Frankia sp. CcI3] Length = 316 Score = 58.2 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 58/157 (36%), Gaps = 6/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I +R + L +FP +++ +V AG A+ + + + E R + Sbjct: 160 LSRAISEREDRMLLEFPTIAELLALAVTAGESAIGALERVSRLTHGELGRELRLALADAR 219 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +L +++ + L + F ++V + G L++ L + R+ + Sbjct: 220 AGATLVQALEGIAARTALAPLVRFVDGMAVAIERGTPLADILRAQAVDAREAG------K 273 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 +EA I +P L + L++ Sbjct: 274 RQLLEAGGRKEIAMMIPVVFLVLPTTVIFAFYPALVS 310 >gi|54294434|ref|YP_126849.1| pilus assembly protein PilC [Legionella pneumophila str. Lens] gi|53754266|emb|CAH15743.1| pilus assembly protein PilC [Legionella pneumophila str. Lens] Length = 406 Score = 58.2 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 23/187 (12%), Positives = 57/187 (30%), Gaps = 14/187 (7%) Query: 2 KHLIKKRTAKFLD--------DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEF 52 ++KKR F D + + +G+P+ A ++ QS+ ++ Sbjct: 47 NKVVKKRKPLFDRKNKKITQADITVFSRQLATMIESGIPLVQAFDIVAKGQSNKRLKDLI 106 Query: 53 RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112 + GL+L+ES+ + + + + G+L L ++ Sbjct: 107 ETIKHDIETGLTLAESLIKHPL-----YFNELFCNLVDAGEKSGSLDIMLDKVATYKEKI 161 Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 + +K K++ A + + + V D + + Sbjct: 162 EIIKKKIKKALTYPIAVMVVALLVTAGLLIYVVPQFESLFKGFGADLPAMTRAVITMSEF 221 Query: 173 LIGIMVM 179 + + Sbjct: 222 MQAYWYI 228 Score = 40.5 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 14/136 (10%), Positives = 41/136 (30%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRM 72 + + AGLP+ +A+ + G + + + ++ E G + ++ Sbjct: 271 AAIARFARTLSITFAAGLPLVEALKSVAGATGNIIYAKATDKIREEVATGQQMFTAMEN- 329 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L + L+ ++ + N + +E + + Sbjct: 330 -----THLFPNMVIQMVAIGEESGALEKMLSKVADFYEEEVNNAVDALSSLLEPIIMSIL 384 Query: 133 IGSLPFCVSTLVYFTS 148 + V + Sbjct: 385 GILVGGLVVAMYLPIF 400 >gi|238761571|ref|ZP_04622546.1| Type II secretion system protein [Yersinia kristensenii ATCC 33638] gi|238700085|gb|EEP92827.1| Type II secretion system protein [Yersinia kristensenii ATCC 33638] Length = 365 Score = 58.2 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 50/165 (30%), Gaps = 8/165 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + + ++AGLP+ + ++ + P + + + G SLSE+I+ Sbjct: 25 ERLITVTRQLATLLQAGLPLVSCLQLLAKEMDSLPWQCLLLEISQQVSQGQSLSEAIAHY 84 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P + +L GNL + L + ++ + KV I Sbjct: 85 PHIFPQLYPP-----VIAMGELTGNLEQCCTQLVQHQEQQQKLHKKVLKALKYPAFVCVI 139 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIG 175 + + V LL ++A G Sbjct: 140 ALVVSIIMLVFVLPEFAQIYQSFDTPLPVLTATLLLISAFLTAYG 184 >gi|312883759|ref|ZP_07743478.1| Flp pilus assembly protein TadC [Vibrio caribbenthicus ATCC BAA-2122] gi|309368508|gb|EFP96041.1| Flp pilus assembly protein TadC [Vibrio caribbenthicus ATCC BAA-2122] Length = 284 Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 55/141 (39%), Gaps = 3/141 (2%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSL 65 + P+ALD++V V +G + + + S + E+ + S Sbjct: 131 RQEIAKHIPDALDLMVVCVSSGQNLEATFNTVGQEMKSISPSLSREWLVTSTEMAVLDSP 190 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + + L E++ +S + G ++EAL ++ R ++ + + Sbjct: 191 QVALTNLDARLALPEINNMIATMSQALKFGAPMAEALKLIASDSRQYHMLELEEWVGKIP 250 Query: 126 AKASAWIIGSLPFCVSTLVYF 146 AK S ++ + V ++ Sbjct: 251 AKMSFPLVVFIMLPVVVIIVA 271 >gi|307726380|ref|YP_003909593.1| type II secretion system F domain-containing protein [Burkholderia sp. CCGE1003] gi|307586905|gb|ADN60302.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1003] Length = 318 Score = 57.8 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 68/152 (44%), Gaps = 4/152 (2%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSES 68 ++ FP+ALD++ V AGL + A+ + G+ V SE + ++ G + ++ Sbjct: 165 IVEGFPDALDLLTVCVEAGLGMDAALMRVAGEIELASPEVASELQLMLLELRSGFTKEKA 224 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME-AK 127 + ++++ F++++ + G ++ +L +S LR R+ M+A+ +A + Sbjct: 225 LRNFALRTGVEDIDTFASMLVQADRFGTSIGASLRVMSDTLRTRRRMRAEERAAKIALKL 284 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159 I P ++ L+ VL+ Sbjct: 285 LFPLIFCIFPALMTVLMGPAFIHIYRVLLPTL 316 >gi|238893137|ref|YP_002917871.1| pullulanase-specific type II secretion system component F [Klebsiella pneumoniae NTUH-K2044] gi|238545453|dbj|BAH61804.1| pullulanase-specific type II secretion system component F [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 404 Score = 57.8 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 17/143 (11%), Positives = 40/143 (27%), Gaps = 7/143 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D + V AG+P+ A+ + Q R + L Sbjct: 65 DLALLTRQLATLVAAGIPLEKALDAVAQQCE----KPSLRTLMAGVRSKVLEGHSLAEAM 120 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + G+L L L+ R+ ++A++ + + Sbjct: 121 RAYPACFDGLFCAMVAAGETSGHLDGVLNRLADYTEQRQQLRARLLQAMIYPI---VLTL 177 Query: 135 SLPFCVSTLVYFTSPGYMNVLIN 157 ++ L+ P + ++ Sbjct: 178 VAISVIAILLSTVVPKVVEQFVH 200 >gi|213051996|ref|ZP_03344874.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 224 Score = 57.8 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + +L G L+E L+R + ++ + V+ Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPA---I 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183 I+ V +++F P + + + LL + G L++ Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGPAWGWLIL 221 >gi|300931769|ref|ZP_07147069.1| type II secretion system F domain protein [Escherichia coli MS 187-1] gi|300460429|gb|EFK23922.1| type II secretion system F domain protein [Escherichia coli MS 187-1] Length = 400 Score = 57.8 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 21/182 (11%), Positives = 54/182 (29%), Gaps = 22/182 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHNLEQGIAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLM 235 Query: 180 RL 181 R Sbjct: 236 RR 237 >gi|242238913|ref|YP_002987094.1| general secretion pathway protein F [Dickeya dadantii Ech703] gi|242130970|gb|ACS85272.1| general secretion pathway protein F [Dickeya dadantii Ech703] Length = 408 Score = 57.8 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 10/160 (6%) Query: 7 KRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLS 64 +R + D + V A LP+ +A+ + QS +R+ V G S Sbjct: 60 RRAHRISASDLALLTRQLATLVAAALPLEEALDAVARQSEKPRLRALMAAVRAKVVEGHS 119 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L+E++ + + G+L L L+ R+ M++++Q + Sbjct: 120 LAEAMGNFPNS-----FERLYCAMVAAGEASGHLDAVLNRLADYTEQRQQMRSRIQQAMI 174 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 + VS L+ P + I+ + L Sbjct: 175 YP---CVLTLVAVAVVSILLSAVVPKVVEQFIHMKQALPL 211 >gi|52841753|ref|YP_095552.1| (type IV) pilus assembly protein PilC [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628864|gb|AAU27605.1| (type IV) pilus assembly protein PilC [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 406 Score = 57.8 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 23/187 (12%), Positives = 57/187 (30%), Gaps = 14/187 (7%) Query: 2 KHLIKKRTAKFLD--------DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEF 52 ++KKR F D + + +G+P+ A ++ QS+ ++ Sbjct: 47 NKVVKKRKPLFDRKNKKITQADITVFSRQLATMIESGIPLVQAFDIVAKGQSNKRLKDLI 106 Query: 53 RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112 + GL+L+ES+ + + + + G+L L ++ Sbjct: 107 ETIKHDIETGLTLAESLIKHPL-----YFNELFCNLVDAGEKSGSLDIMLDKVATYKEKI 161 Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 + +K K++ A + + + V D + + Sbjct: 162 EIIKKKIKKALTYPIAVMVVALLVTAGLLIYVVPQFESLFKGFGADLPAMTRAVITMSEF 221 Query: 173 LIGIMVM 179 + + Sbjct: 222 MQAYWYI 228 Score = 40.1 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 14/136 (10%), Positives = 41/136 (30%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRM 72 + + AGLP+ +A+ + G + + + ++ E G + ++ Sbjct: 271 AAIARFARTLSITFAAGLPLVEALKSVAGATGNIIYAKATDKIREEVATGQQMFTAMEN- 329 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L + L+ ++ + N + +E + + Sbjct: 330 -----THLFPNMVIQMVAIGEESGALEKMLSKVADFYEEEVNNAVDALSSLLEPIIMSIL 384 Query: 133 IGSLPFCVSTLVYFTS 148 + V + Sbjct: 385 GILVGGLVVAMYLPIF 400 >gi|218456567|gb|ACK77478.1| type IV pilin assembly protein [Vibrio vulnificus] Length = 408 Score = 57.8 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 16/154 (10%), Positives = 45/154 (29%), Gaps = 9/154 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D + + G+P+ ++ ++ ++S V + G LS+++ Sbjct: 68 KDITLLTRQLATMLTTGVPILQSLKLVADNHRKAEMKSILASVSKAVEAGTPLSKALRSA 127 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + GNL + L+ + ++AKV + + Sbjct: 128 S-----PQFDGIYVDLVATGEQSGNLDQVFERLAFYREKNEQLRAKVVKALIYP---CMV 179 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 + ++ P + + Sbjct: 180 VLVALGVSYLMLTKVIPEFRKMFTGFGAELPWFT 213 Score = 35.9 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 11/136 (8%), Positives = 37/136 (27%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + S AG+P+ ++ + + + V G+ + ++ Sbjct: 272 AAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAAGMPMYIAMRN- 330 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G + + L ++ I + +E ++ Sbjct: 331 -----SLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFL 385 Query: 133 IGSLPFCVSTLVYFTS 148 + V+ + Sbjct: 386 GVVVGGLVTAMYLPIF 401 >gi|167628390|ref|YP_001678889.1| type ii secretion system f domain protein [Heliobacterium modesticaldum Ice1] gi|167591130|gb|ABZ82878.1| type ii secretion system f domain protein [Heliobacterium modesticaldum Ice1] Length = 408 Score = 57.8 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 21/169 (12%), Positives = 52/169 (30%), Gaps = 8/169 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRM 72 + V AG+P+ +++++ + ++ ++V G +L ++ + Sbjct: 69 RQLSGFCRQLAALVDAGIPMCTSLSMVARRLRPPALQRAAQQVALALSQGETLISALEQ- 127 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + GG L ++L L+ + K++A + Sbjct: 128 ----QRHVFPELFVRLVETGEAGGVLDQSLHRLADHYDKESAITRKIRAALLYPALVLAT 183 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI--GIMVM 179 G V + L +A A + G+ +M Sbjct: 184 AGGSTVFFFLYVIPAYSALLTSLGMGLPEITRFVLALAKWIGDYGLWMM 232 Score = 35.1 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 14/136 (10%), Positives = 36/136 (26%), Gaps = 5/136 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + V +G+P+ A+A++ + +E R + + + Sbjct: 271 RAAIARVSRSLSILVGSGVPIIQALAIVEKVALYRSLAEAVRGVR-----SGVGKGHPLH 325 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L + + + +E + Sbjct: 326 QMMERSPLFPPEFVHLVYIGEESGALDVLLEKTAEYFEAEVDGAVHRLMILLEPMLLFLM 385 Query: 133 IGSLPFCVSTLVYFTS 148 G + F +L+ Sbjct: 386 AGVVGFLALSLLMPLF 401 >gi|323495863|ref|ZP_08100931.1| type IV pilin biogenesis protein PilC [Vibrio sinaloensis DSM 21326] gi|323319079|gb|EGA72022.1| type IV pilin biogenesis protein PilC [Vibrio sinaloensis DSM 21326] Length = 408 Score = 57.8 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 59/182 (32%), Gaps = 8/182 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + + + D + + G+P+ A+ ++ ++S ++++ Sbjct: 55 ISFIKRATHRVKRKDITILTRQLATMLVTGVPLIQALKLVADNHRKAEMKSILAQIVKGV 114 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G LS+S+ ++ + + GNL E ++ + ++AKV Sbjct: 115 ESGTPLSKSMRTASQH-----FDSLYIDLVTSGEQSGNLPEVFERIATYREKSEQLRAKV 169 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIM 177 + S+ + + T+V + +L ++ G Sbjct: 170 IKALIYPSMVMLTALSVTYLMLTVVIPEFESMFKGFGAELPWFTQQVLALSHWVQDYGAF 229 Query: 178 VM 179 V+ Sbjct: 230 VI 231 Score = 37.0 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 12/136 (8%), Positives = 38/136 (27%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + S AG+P+ ++ ++ + +V G+ + ++ Sbjct: 272 AAIAKFSRTLATSFSAGIPILSSLKTSAKTANSVHYQHAIDQVYSDTAAGMPMYIAMRN- 330 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G+L + L ++ I + +E ++ Sbjct: 331 -----SDSFPEMVLQMVMIGEESGSLDDMLHKVATIYEFEIDNTVDNLGKILEPMIIIFL 385 Query: 133 IGSLPFCVSTLVYFTS 148 + V + Sbjct: 386 GVVVGGLVIAMYLPIF 401 >gi|90580162|ref|ZP_01235969.1| putative MSHA biogenesis protein MshG [Vibrio angustum S14] gi|90438464|gb|EAS63648.1| putative MSHA biogenesis protein MshG [Vibrio angustum S14] Length = 408 Score = 57.8 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 17/171 (9%), Positives = 44/171 (25%), Gaps = 9/171 (5%) Query: 12 FLDDFPN-----ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 F P + +AG+P+ A + +S P+ + Sbjct: 60 FQAQLPLEVLVIFCRQLYSLTKAGVPLLRAFKGLSQSASHPLLKTTLEALTLDLTNGR-- 117 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + + S + + G L + L L+ N + ++++ Sbjct: 118 --ALSVAMQQHPRVFSRLFISMIHVGENTGRLDQVLLQLANYYEQEMNTRRQIKSAMRYP 175 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 I ++T V + + + + + + Sbjct: 176 TFVLTAIVIAMGILNTKVIPQFASMFSRFGVELPWPTRVLIGTSNFFVHYW 226 Score = 42.8 bits (99), Expect = 0.025, Method: Composition-based stats. Identities = 12/135 (8%), Positives = 31/135 (22%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 +RAG+P++ A+ + + + + S Sbjct: 269 RAQMARFARTFSLMIRAGVPLNQAIQMAAESLGNRFLE-----NRLIEMKQGIEGGSSIS 323 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G + E L ++ K +E + Sbjct: 324 RTATKSGVFTPLVLQMIAVGEETGQVDELLLEVADFYDREVEYDLKTLTARIEPIMLVVV 383 Query: 133 IGSLPFCVSTLVYFT 147 G + + Sbjct: 384 AGMVLLLALGIFLPM 398 >gi|94267866|ref|ZP_01291017.1| type II secretion system protein [delta proteobacterium MLMS-1] gi|93451826|gb|EAT02573.1| type II secretion system protein [delta proteobacterium MLMS-1] Length = 411 Score = 57.8 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 22/160 (13%), Positives = 50/160 (31%), Gaps = 7/160 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 DD + +AG+P+ + + S +P +E R I T S Sbjct: 71 DDLILFSRQMYSLTKAGVPLLRTMRGLAETSRNPELAEVLRAIGTDLE----SGHELSAA 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G + E + L+ + K+ + +++A +I Sbjct: 127 MGNHPRVFDDLYISMIRVGEDSGQMEEIFSRLALHYQQEKDTRDRIKAALRYPV---IVI 183 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 ++ ++ + F P + + L M Sbjct: 184 LAMVIALAVINVFVIPAFTGIFAGAGVELPLPTKILIGMS 223 >gi|222035036|emb|CAP77779.1| general secretion pathway protein F [Escherichia coli LF82] gi|312947878|gb|ADR28705.1| general secretory pathway component, cryptic [Escherichia coli O83:H1 str. NRG 857C] Length = 398 Score = 57.8 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 26/198 (13%), Positives = 60/198 (30%), Gaps = 29/198 (14%) Query: 5 IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLG 62 +K R + + + A LP+ +++AVI Q S++ + +V G Sbjct: 49 VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNNRLADVLNQVRSAILEG 108 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS+++ + + G L+ L L+ +R+ +++K+ Sbjct: 109 HPLSDALQHFPTL-----FDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQS 163 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND-------------------PRGHM 163 + + V L+ P ++ G Sbjct: 164 LIYP---CMLTTVAIVVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQHTGPT 220 Query: 164 LLGVAAAFMLIGIMVMRL 181 LL + + ++ Sbjct: 221 LLATVFIVAVGFWLWLKR 238 >gi|217316906|gb|ACK37864.1| PilC [Vibrio vulnificus] Length = 408 Score = 57.8 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 16/154 (10%), Positives = 45/154 (29%), Gaps = 9/154 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D + + G+P+ ++ ++ ++S V + G LS+++ Sbjct: 68 KDITLLTRQLATMLTTGVPILQSLKLVADNHRKAEMKSILASVSKAVEAGTPLSKALRSA 127 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + GNL + L+ + ++AKV + + Sbjct: 128 S-----PQFDGIYVDLVATGEQSGNLDQVFERLAFYREKNEQLRAKVVKALIYP---CMV 179 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 + ++ P + + Sbjct: 180 VLVALGVSYLMLTKVIPEFRKMFTGFGAELPWFT 213 Score = 35.9 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 11/136 (8%), Positives = 37/136 (27%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + S AG+P+ ++ + + + V G+ + ++ Sbjct: 272 AAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAAGMPMYIAMRN- 330 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G + + L ++ I + +E ++ Sbjct: 331 -----SLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFL 385 Query: 133 IGSLPFCVSTLVYFTS 148 + V+ + Sbjct: 386 GVVVGGLVTAMYLPIF 401 >gi|169834864|ref|YP_001715936.1| type II secretion system protein F [Clostridium botulinum A3 str. Loch Maree] gi|169408971|gb|ACA57381.1| bacterial type II secretion system protein F domain [Clostridium botulinum A3 str. Loch Maree] Length = 308 Score = 57.8 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 79/187 (42%), Gaps = 1/187 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++H R + F NAL I +R +S+A+ + + P++ EF +I+ Sbjct: 120 IEHKGTNRVIEINKQFINALIDIGDYLRIDSNLSNAIKNVTPNIAYPLKGEFIYIIKEID 179 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 ++ +++ + V+ + + + N+S+ S +R R K+ Sbjct: 180 SNTNILDTLKHFDYRVNSTVVNTWVDSMLFANDKRANVSDLCIKHSAKVRKRLTQNEKLN 239 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A K + +I + ++ +++ +SP + + L ++P G +L + + + + Sbjct: 240 AKLSGLKFISIMIMIILLGMAFMMFGSSPEFKDFL-HEPFGRVLALITGISYTVTTVFIF 298 Query: 181 LMINFDV 187 IN +V Sbjct: 299 RKINKEV 305 >gi|294054977|ref|YP_003548635.1| Type II secretion system F domain protein [Coraliomargarita akajimensis DSM 45221] gi|293614310|gb|ADE54465.1| Type II secretion system F domain protein [Coraliomargarita akajimensis DSM 45221] Length = 420 Score = 57.8 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 22/173 (12%), Positives = 63/173 (36%), Gaps = 8/173 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRM 72 ++ + ++AGLP+ A+ V++ Q + ++ + G S S+ +++ Sbjct: 78 EELTTFTRQLATLLQAGLPLLRALEVMIRQERNLRFKAVLEQIADQVKSGNSFSDGLAQH 137 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + GG L L+ L+ + K KV++ + + Sbjct: 138 PK-----VFDRLYINMIKAGEAGGVLDVVLSRLAGFMEKALKTKKKVKSAMVYPIVVVGV 192 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVMRLMI 183 S+ + +V + +++ L + + + G ++ ++ Sbjct: 193 AVSIVVLLMVVVVPKFQSIFDDMLDGKALPAPTQLVINISNFVKGNFIITAIL 245 >gi|217329821|ref|ZP_03445896.1| general secretion pathway protein F [Escherichia coli O157:H7 str. TW14588] gi|217317052|gb|EEC25485.1| general secretion pathway protein F [Escherichia coli O157:H7 str. TW14588] Length = 407 Score = 57.8 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 23/172 (13%), Positives = 51/172 (29%), Gaps = 12/172 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + V A LP+ +A+ ++ QS P + + L Sbjct: 66 SAELALLTRQLATLVAASLPLEEALDALLRQSEKPRQRNLIAAVR----TKVLEGHSLAA 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 M + + G L L+ L+ R+ M+ ++ + + Sbjct: 122 AMGMFPGTFERLYCAMVAAGETSGRLDVVLSRLADYTEQRQIMRNRLLQALLYP---CVL 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIND-----PRGHMLLGVAAAFMLIGIMVM 179 ++ L+ P + I+ +L+G A G ++ Sbjct: 179 TLVAVGVIAILLTAVVPKVVEQFIHMKQTLPLSTRVLMGAAEVSQTWGPWLL 230 >gi|331684969|ref|ZP_08385555.1| general secretion pathway protein F [Escherichia coli H299] gi|331077340|gb|EGI48552.1| general secretion pathway protein F [Escherichia coli H299] Length = 398 Score = 57.8 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 27/198 (13%), Positives = 60/198 (30%), Gaps = 29/198 (14%) Query: 5 IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62 +K R + + + A LP+ +++AVI QSS+ + +V G Sbjct: 49 VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLADVLNQVRSAILEG 108 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS+++ + + G L+ L L+ +R+ +++K+ Sbjct: 109 HPLSDALQHFPTL-----FDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQS 163 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND-------------------PRGHM 163 + + V L+ P ++ G Sbjct: 164 LIYP---CMLTAVAIVVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQHTGPT 220 Query: 164 LLGVAAAFMLIGIMVMRL 181 LL + + ++ Sbjct: 221 LLATVFIVAVGFWLWLKR 238 >gi|154151943|ref|YP_001405561.1| type II secretion system protein [Candidatus Methanoregula boonei 6A8] gi|154000495|gb|ABS56918.1| type II secretion system protein [Methanoregula boonei 6A8] Length = 300 Score = 57.8 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 67/186 (36%), Gaps = 3/186 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ I+ + P AL + +G D + I + + +EFR+V+ Sbjct: 108 LQNQIENKKRDIDTQIPYALAFMSILASSGATPLDIIRRIAREDYGQISNEFRKVLFRVD 167 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + + +++ +V+ P I+ GG L L S+ L + K Sbjct: 168 ILGEDVVTAMNGLVQNTPSDLFRDICIDITNIIYGGGGLKSYLETKSKELMAIRRQTYKE 227 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL--GVAAAFMLIGIM 177 S+ ++ G + ++ G + + + H + + LI ++ Sbjct: 228 FVESLAVFGEGYLGGVVMTITLAILGVVISGALGIQLGPFSAHDMFNYLIYLLIPLINVV 287 Query: 178 VMRLMI 183 ++++ Sbjct: 288 FLQMLA 293 >gi|126437755|ref|YP_001073446.1| type II secretion system protein [Mycobacterium sp. JLS] gi|126237555|gb|ABO00956.1| type II secretion system protein [Mycobacterium sp. JLS] Length = 262 Score = 57.8 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 61/172 (35%), Gaps = 1/172 (0%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + +AL+++V +R G A G+ V R V LG ++ + Sbjct: 86 SESLQSALEVLVGELRVGAHPVAAFETAAGEIDGQVADSLRAVAARARLGADVAAGLHDT 145 Query: 73 VRYMPLQE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 R L + + G +++ + R + +R+ ++V A A+A+A Sbjct: 146 ARKSSLASQWDRIAVCWQLAQTHGLSIAALMQTAQRDIAERQRFSSRVSAGMAGARATAA 205 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 ++ LP L +L+ G LL + G++ + Sbjct: 206 VLAGLPVLGIGLGQMIGADPGRLLLGGGAGGWLLLIGVTLSCAGLLWSDRIT 257 >gi|10955270|ref|NP_052611.1| EtpF [Escherichia coli O157:H7 str. Sakai] gi|75994481|ref|YP_325595.1| type II secretion protein [Escherichia coli O157:H7 EDL933] gi|149930766|ref|YP_001294688.1| w0024 [Escherichia coli] gi|168750721|ref|ZP_02775743.1| general secretion pathway protein F [Escherichia coli O157:H7 str. EC4113] gi|168757327|ref|ZP_02782334.1| general secretion pathway protein F [Escherichia coli O157:H7 str. EC4401] gi|168763013|ref|ZP_02788020.1| general secretion pathway protein F [Escherichia coli O157:H7 str. EC4501] gi|168769209|ref|ZP_02794216.1| general secretion pathway protein F [Escherichia coli O157:H7 str. EC4486] gi|168769319|ref|ZP_02794326.1| general secretion pathway protein F [Escherichia coli O157:H7 str. EC4486] gi|168776692|ref|ZP_02801699.1| general secretion pathway protein F [Escherichia coli O157:H7 str. EC4196] gi|168783066|ref|ZP_02808073.1| general secretion pathway protein F [Escherichia coli O157:H7 str. EC4076] gi|168789908|ref|ZP_02814915.1| general secretion pathway protein F [Escherichia coli O157:H7 str. EC869] gi|168802554|ref|ZP_02827561.1| general secretion pathway protein F [Escherichia coli O157:H7 str. EC508] gi|195940094|ref|ZP_03085476.1| EtpF [Escherichia coli O157:H7 str. EC4024] gi|208811384|ref|ZP_03253144.1| general secretion pathway protein F [Escherichia coli O157:H7 str. EC4206] gi|208817373|ref|ZP_03258402.1| general secretion pathway protein F [Escherichia coli O157:H7 str. EC4045] gi|208823340|ref|ZP_03263657.1| general secretion pathway protein F [Escherichia coli O157:H7 str. EC4042] gi|209395613|ref|YP_002268500.1| general secretion pathway protein F [Escherichia coli O157:H7 str. EC4115] gi|254667453|ref|YP_003082139.1| type II secretion protein [Escherichia coli O157:H7 str. TW14359] gi|261225637|ref|ZP_05939918.1| type II secretion protein [Escherichia coli O157:H7 str. FRIK2000] gi|261257908|ref|ZP_05950441.1| type II secretion protein [Escherichia coli O157:H7 str. FRIK966] gi|37695754|gb|AAR00416.1|AF401292_17 w0024 [Escherichia coli] gi|2598403|emb|CAA70957.1| etpF [Escherichia coli] gi|3337002|dbj|BAA31761.1| Type II secretion pathway related protein [Escherichia coli O157:H7 str. Sakai] gi|3822149|gb|AAC70103.1| type II secretion protein [Escherichia coli O157:H7] gi|187767918|gb|EDU31762.1| general secretion pathway protein F [Escherichia coli O157:H7 str. EC4196] gi|188015149|gb|EDU53271.1| general secretion pathway protein F [Escherichia coli O157:H7 str. EC4113] gi|188999539|gb|EDU68525.1| general secretion pathway protein F [Escherichia coli O157:H7 str. EC4076] gi|189355667|gb|EDU74086.1| general secretion pathway protein F [Escherichia coli O157:H7 str. EC4401] gi|189361624|gb|EDU80043.1| general secretion pathway protein F [Escherichia coli O157:H7 str. EC4486] gi|189361688|gb|EDU80107.1| general secretion pathway protein F [Escherichia coli O157:H7 str. EC4486] gi|189366740|gb|EDU85156.1| general secretion pathway protein F [Escherichia coli O157:H7 str. EC4501] gi|189370519|gb|EDU88935.1| general secretion pathway protein F [Escherichia coli O157:H7 str. EC869] gi|189375467|gb|EDU93883.1| general secretion pathway protein F [Escherichia coli O157:H7 str. EC508] gi|208730014|gb|EDZ79231.1| general secretion pathway protein F [Escherichia coli O157:H7 str. EC4206] gi|208730550|gb|EDZ79249.1| general secretion pathway protein F [Escherichia coli O157:H7 str. EC4045] gi|208736935|gb|EDZ84620.1| general secretion pathway protein F [Escherichia coli O157:H7 str. EC4042] gi|209157068|gb|ACI34502.1| general secretion pathway protein F [Escherichia coli O157:H7 str. EC4115] gi|254595805|gb|ACT75165.1| type II secretion protein [Escherichia coli O157:H7 str. TW14359] gi|326337156|gb|EGD60992.1| General secretion pathway protein F [Escherichia coli O157:H7 str. 1125] gi|326347654|gb|EGD71372.1| General secretion pathway protein F [Escherichia coli O157:H7 str. 1044] Length = 407 Score = 57.8 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 23/172 (13%), Positives = 51/172 (29%), Gaps = 12/172 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + V A LP+ +A+ ++ QS P + + L Sbjct: 66 SAELALLTRQLATLVAASLPLEEALDALLRQSEKPRQRNLIAAVR----TKVLEGHSLAA 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 M + + G L L+ L+ R+ M+ ++ + + Sbjct: 122 AMGMFPGTFERLYCAMVAAGETSGRLDVVLSRLADYTEQRQIMRNRLLQALLYP---CVL 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIND-----PRGHMLLGVAAAFMLIGIMVM 179 ++ L+ P + I+ +L+G A G ++ Sbjct: 179 TLVAVGVIAILLTAVVPKVVEQFIHMKQTLPLSTRVLMGAAEVSQTWGPWLL 230 >gi|153829296|ref|ZP_01981963.1| MSHA biogenesis protein MshG [Vibrio cholerae 623-39] gi|148875196|gb|EDL73331.1| MSHA biogenesis protein MshG [Vibrio cholerae 623-39] Length = 407 Score = 57.8 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 15/165 (9%), Positives = 43/165 (26%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72 + + +AG+P+ ++ + + V G +LS Sbjct: 67 EVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS-----A 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + S + + G L +AL L+ + +++ Sbjct: 122 SMQLHSAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITF 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + F ++ V + + + + + + Sbjct: 182 VLLAMFVLNVKVIPQFTSMFSRFGVELPLPTRILITTSDFFVNYW 226 Score = 41.3 bits (95), Expect = 0.066, Method: Composition-based stats. Identities = 10/135 (7%), Positives = 35/135 (25%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + AG+P++ ++A+ + + + + ++ Sbjct: 269 RAQLSRFARTFSLMLSAGVPLNQSLALSAEAIDNKFLEQRIL-----EMKSQIESGVAVS 323 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G + E L +S + K +E ++ Sbjct: 324 ATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPILLVFV 383 Query: 133 IGSLPFCVSTLVYFT 147 + + Sbjct: 384 AAMVLVLALGIFLPM 398 >gi|328474168|gb|EGF44973.1| type IV pilin biogenesis protein PilC [Vibrio parahaemolyticus 10329] Length = 407 Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 19/154 (12%), Positives = 46/154 (29%), Gaps = 9/154 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D I + G+P+ A+ ++ ++S V G +S+++ Sbjct: 67 KDITVFTRQISTMLVTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAMRTA 126 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + GNL+E L+ + ++AKV + + Sbjct: 127 SNHFDPLYTD-----LIATGEQSGNLAEVFERLATYREKNEQLRAKVIKALIYPA---MV 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 I ++ P + + + Sbjct: 179 ILVALGVSFIMLTKVIPEFEKMFVGFGAELPWFT 212 Score = 35.9 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 13/136 (9%), Positives = 37/136 (27%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72 + S AG+P+ ++ S + V G+ + ++ Sbjct: 271 AAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNMHYQLAIEEVYRDTAAGMPMYVAMRN- 329 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G L + L ++ I + + +E ++ Sbjct: 330 -----CNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFL 384 Query: 133 IGSLPFCVSTLVYFTS 148 + V+ + Sbjct: 385 GIVVGGLVTAMYLPIF 400 >gi|300788924|ref|YP_003769215.1| type II secretion system protein [Amycolatopsis mediterranei U32] gi|299798438|gb|ADJ48813.1| type II secretion system protein [Amycolatopsis mediterranei U32] Length = 283 Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 24/181 (13%), Positives = 65/181 (35%), Gaps = 3/181 (1%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAG-LPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 L ++R + + L + +RAG + A+ + +R+E + + Sbjct: 90 KLAEQRIERLE-ALEDWLRGLADVLRAGNAGLVGALLDSANDVAPAIRAEVTTLGQRLR- 147 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 ++ ++ + + Q + + V Q G +E L L+R + + + Sbjct: 148 TWDVAGALLQFADDVDDQIGDAAAAGLCVAHQQGTGTAELLTTLARQVAADVAARRGAET 207 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 +++A I+ L + + + G ++L V + + ++ +R Sbjct: 208 ERARRRSAARILLGLWAVMFVGFAAFGSDSYTSVYSSVGGQLVLAVVLGVVGVAVVWLRR 267 Query: 182 M 182 + Sbjct: 268 L 268 >gi|257455015|ref|ZP_05620260.1| general secretion pathway protein F [Enhydrobacter aerosaccus SK60] gi|257447587|gb|EEV22585.1| general secretion pathway protein F [Enhydrobacter aerosaccus SK60] Length = 401 Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 50/166 (30%), Gaps = 7/166 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + + A +P+ A+ I QS V++ V G SL+ ++ Sbjct: 64 DLALITRQLSVLLAASIPIEQALQAIARQSEKPHVKALMHGVRAKVLEGYSLASALQDSG 123 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + G+L L L+ +R M+ KVQ + + Sbjct: 124 N------FPAIYIATIAAGERSGHLDLILNQLADYTENRFAMQKKVQGAMVYPIILLMMA 177 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ + + V + +A + +L + Sbjct: 178 VAVVVGLMSFVVPKIVKVFEQSDQALPWITQVVLALSNLLTQWWWL 223 >gi|110800691|ref|YP_696959.1| type II secretion system protein F [Clostridium perfringens ATCC 13124] gi|168211644|ref|ZP_02637269.1| bacterial type II secretion system protein F [Clostridium perfringens B str. ATCC 3626] gi|110675338|gb|ABG84325.1| bacterial type II secretion system protein F [Clostridium perfringens ATCC 13124] gi|170710395|gb|EDT22577.1| bacterial type II secretion system protein F [Clostridium perfringens B str. ATCC 3626] Length = 401 Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 18/152 (11%), Positives = 50/152 (32%), Gaps = 9/152 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D + +GL + A+ +++ Q +R V G +L+ S+ + Sbjct: 62 KDIAVFCRQFYVMLDSGLSIGKALNILIEQCEKPKLREALIGVNGELKRGETLASSMRK- 120 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 T + + GNL L ++ ++ K+++ + + Sbjct: 121 ----RKDVFPNLLTSMIDAGERSGNLDIILKRMAEYYEKETKIRGKIKSAMIYPI---VL 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 ++ ++ F P ++ + + + Sbjct: 174 GVVAIIAITFILTFVMPTFVQMFEENNVDLPM 205 Score = 38.9 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 43/134 (32%), Gaps = 7/134 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77 + +G+ + ++ ++ + + E +V E G L +SI M Sbjct: 270 FTRTMGIVSSSGMSLVTSIEIVASVVGNKIAEKELLKVKEKVLKGEGLGDSI------MN 323 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + + G+L L + D + K +E + + Sbjct: 324 IKIFPPMLASMVKIGEEAGSLDSILDKTADFYDDELEREIKTATALIEPSMIVLMGIIIG 383 Query: 138 FCVSTLVYFTSPGY 151 F + +++ Y Sbjct: 384 FLLISILTPMFKMY 397 >gi|295837424|ref|ZP_06824357.1| integral membrane protein [Streptomyces sp. SPB74] gi|295826519|gb|EDY42992.2| integral membrane protein [Streptomyces sp. SPB74] Length = 305 Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 64/166 (38%), Gaps = 1/166 (0%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 ++ VRAG ++A+A V + + ++ G + ++ R Sbjct: 131 LCGLLAGEVRAGNRPAEALAHAV-SACGELGHGRADILAAARFGGDVPAALRVAAREPGA 189 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + V G L+ L L R L ++ +A ++A A+A+A ++ +LP Sbjct: 190 EGLVGLAACWRVALDRGAGLAVGLERLERALLADRDQRADLRAQLSGARATAALLAALPL 249 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L +NVL G + L + +A G+ ++ Sbjct: 250 LGLLLGSAVGAAPLNVLFGSVPGFVCLVLGSALEAAGVWWCLWLVR 295 >gi|182625510|ref|ZP_02953281.1| bacterial type II secretion system protein F [Clostridium perfringens D str. JGS1721] gi|177909198|gb|EDT71663.1| bacterial type II secretion system protein F [Clostridium perfringens D str. JGS1721] Length = 401 Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 17/152 (11%), Positives = 49/152 (32%), Gaps = 9/152 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D + +GL + A+ +++ Q +R V G +L+ S+ + Sbjct: 62 KDIAVFCRQFYVMLDSGLSIGKALNILIEQCEKPKLREALIGVNGELKRGETLASSMRK- 120 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + GNL L ++ ++ K+++ + + Sbjct: 121 ----RKDVFPNLLISMIDAGERSGNLDIILKRMAEYYEKETKIRGKIKSAMIYPI---VL 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 ++ ++ F P ++ + + + Sbjct: 174 GVVAIIAITFILTFVMPTFVQMFEENNVDLPM 205 Score = 38.9 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 43/134 (32%), Gaps = 7/134 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77 + +G+ + ++ ++ + + E +V E G L +SI M Sbjct: 270 FTRTMGIVSSSGMSLVTSIEIVASVVGNKIAEKELLKVKEKVLKGEGLGDSI------MN 323 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + + G+L L + D + K +E + + Sbjct: 324 IKIFPPMLASMVKIGEEAGSLDSILDKTADFYDDELEREIKTATALIEPSMIVLMGIIIG 383 Query: 138 FCVSTLVYFTSPGY 151 F + +++ Y Sbjct: 384 FLLISILTPMFKMY 397 >gi|242399928|ref|YP_002995353.1| Bacterial type II secretion system protein F domain, putative [Thermococcus sibiricus MM 739] gi|242266322|gb|ACS91004.1| Bacterial type II secretion system protein F domain, putative [Thermococcus sibiricus MM 739] Length = 308 Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 66/176 (37%), Gaps = 4/176 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + K+ ++ P+A I S+RAG+ S+A+ + EF+R + G Sbjct: 85 WKLAKKIEDMENNIPDAFFYIASSLRAGVSFSEALEEASTARFGALTDEFKRTVSEIKRG 144 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQA 121 S E++ + + ST+I +++ G +++ L ++ +R+ +K + +A Sbjct: 145 RSTYEALKAFALRNRRSIIIYRSTMIILEAYERGAPMADVLVAVANDVREILRIKKERKA 204 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + I + + + G L A +L+ + Sbjct: 205 STGMQAMFFIIASGFLGPAILGIV---SQLIGSMNTPEIGLNLPVDAIYNVLLAFV 257 >gi|319788658|ref|YP_004148133.1| type II secretion system F domain [Pseudoxanthomonas suwonensis 11-1] gi|317467170|gb|ADV28902.1| Type II secretion system F domain [Pseudoxanthomonas suwonensis 11-1] Length = 296 Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 1/135 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQ 59 + K R + D P LD I SV AGL V+ + + + + EF R++ Sbjct: 138 LGERRKLRHKAVVRDLPVYLDFITMSVEAGLNVTGGIEQAVAKGPAGALSQEFSRMLRDI 197 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 GL +E++ RM M + +++ F++ + ++G NLS+ L + R+ + ++A+ Sbjct: 198 RAGLPRAEALKRMSERMDISQITNFTSALIQADKVGANLSDTLRAQANQRREERFLRAEK 257 Query: 120 QALSMEAKASAWIIG 134 AL K ++ Sbjct: 258 LALEAPVKMMLPLVM 272 >gi|313819747|gb|EFS57461.1| type II secretion system F domain protein [Propionibacterium acnes HL046PA2] Length = 288 Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 61/169 (36%), Gaps = 1/169 (0%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ++ + + + G + AV + ++ + +++ + E+ R Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + E +++ + S L ++ ++ R + +V+A + + S Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I + + + ++ L P G +L+ VA +I ++ M Sbjct: 224 QITLVTIAMFGGLLVIGRSFLAPL-ATPPGQVLVAVAVVMYVIALVQMY 271 >gi|331674828|ref|ZP_08375585.1| general secretion pathway protein F [Escherichia coli TA280] gi|331067737|gb|EGI39135.1| general secretion pathway protein F [Escherichia coli TA280] Length = 398 Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 27/198 (13%), Positives = 60/198 (30%), Gaps = 29/198 (14%) Query: 5 IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62 +K R + + + A LP+ +++AVI QSS+ + +V G Sbjct: 49 VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLADVLNQVRSAILEG 108 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS+++ + + G L+ L L+ +R+ +++K+ Sbjct: 109 HPLSDALQHFPTL-----FDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQS 163 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND-------------------PRGHM 163 + + V L+ P ++ G Sbjct: 164 LIYP---CMLTAVAIVVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQHTGPT 220 Query: 164 LLGVAAAFMLIGIMVMRL 181 LL + + ++ Sbjct: 221 LLATVFIVAVGFWLWLKR 238 >gi|119475557|ref|ZP_01615910.1| MSHA biogenesis protein MshG [marine gamma proteobacterium HTCC2143] gi|119451760|gb|EAW32993.1| MSHA biogenesis protein MshG [marine gamma proteobacterium HTCC2143] Length = 337 Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 17/161 (10%), Positives = 45/161 (27%), Gaps = 4/161 (2%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + ++AG+ ++ A+ + +++ V+ LS S Sbjct: 2 FARQLYSLIKAGVVLNRAIRGLAESTNNTRFR---NVLMEVEASLS-SGVNLSTSLAKHG 57 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 I + G L A L L K+ + ++ + +G Sbjct: 58 DVFDSMFVNIVSVGENSGRLESAFHQLYAYLELEKDTRRRISTATRYPMFVLIALGIAIV 117 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ V + D + + + + ++ Sbjct: 118 VLNIFVIPVFADLFSQFGADLPWATKILIGTSSFFVNHWML 158 Score = 34.3 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 15/140 (10%), Positives = 41/140 (29%), Gaps = 6/140 (4%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +++G+P+ A+ + + + S+ S + Sbjct: 202 LSRFSRSFSMMLKSGVPLIKALELSSMSVGNSYV-----AKNIGGMRNSIQRGESLLRSA 256 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + + + G + E L ++ + K A +E + I G Sbjct: 257 VQSKMFTPLVLQMLQVGEETGRVDEMLDEVAEFYEQEVDYDLKNLASYIEPVLISCIAGV 316 Query: 136 LPFCVSTLVYFTSPGYMNVL 155 + + M+V+ Sbjct: 317 VMILALGIFLPMW-DMMSVM 335 >gi|110803628|ref|YP_699547.1| type II secretion system protein F [Clostridium perfringens SM101] gi|110684129|gb|ABG87499.1| bacterial type II secretion system protein F [Clostridium perfringens SM101] Length = 401 Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 21/157 (13%), Positives = 51/157 (32%), Gaps = 9/157 (5%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSE 67 L D + +GL + A+ +++ Q P E V G +L+ Sbjct: 57 RKVKLKDIAIFCRQFYVMLDSGLSIGKALNILIEQGEKPKIREALIGVNGDLKRGETLAS 116 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 S+ + T + + GNL L +S ++ K+++ + Sbjct: 117 SMRK-----RKDVFPNLLTSMIDAGERSGNLDIILKRMSEYYEKETKIRGKIKSAMIYPI 171 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 + ++ ++ F P ++ + + + Sbjct: 172 ---VLGVVAIIAITFILTFVMPTFVQMFEENNVDLPM 205 Score = 38.6 bits (88), Expect = 0.38, Method: Composition-based stats. Identities = 16/134 (11%), Positives = 43/134 (32%), Gaps = 7/134 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77 + +G+ + ++ ++ + + E +V E G L +SI M Sbjct: 270 FTRTMGIVSSSGMSLVTSLEIVASVVGNKIAEKELLKVKEKVLKGEGLGDSI------MK 323 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + + G+L L + D + + +E + + Sbjct: 324 IKIFPPMLASMVKVGEEAGSLDSILDKTADFYDDELEREIQTATALIEPAMIVVMGIIIG 383 Query: 138 FCVSTLVYFTSPGY 151 F + +++ Y Sbjct: 384 FLLISILTPMFKMY 397 >gi|20808465|ref|NP_623636.1| hypothetical protein TTE2066 [Thermoanaerobacter tengcongensis MB4] gi|20517083|gb|AAM25240.1| hypothetical protein TTE2066 [Thermoanaerobacter tengcongensis MB4] Length = 248 Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 54/152 (35%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 K+ ++ P L+ + + G+PV + + IV ++ + + G+ LS Sbjct: 96 KKRLMADNELPAILETFISGLSVGMPVENIMRYIVENKKGYMKEIIQEALHKADAGIPLS 155 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 S+ + ++ S+ L+E L L R + + + + +A ++ Sbjct: 156 LSLEEAAEKSLNKYFQRAVKILIKTSETSQGLAEQLDELLRDIEEDRINEKTAKASVLDN 215 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158 + ++ + V F + + Sbjct: 216 VIAIPVLIGFFIPLIVFVIFPFIVSFSNIFGT 247 >gi|328952522|ref|YP_004369856.1| Type II secretion system F domain protein [Desulfobacca acetoxidans DSM 11109] gi|328452846|gb|AEB08675.1| Type II secretion system F domain protein [Desulfobacca acetoxidans DSM 11109] Length = 404 Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 64/183 (34%), Gaps = 9/183 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ 59 + +R + + + + ++AGLP+ ++ + S ++ +++ Sbjct: 55 LSFRRGRRVS--SREVVLFTEELADLLKAGLPLDRSLQALKEVTSRSGMKEVINQILRDL 112 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G +LS+S+SR + P + + GG L E+L+ LS L+ ++ + Sbjct: 113 QGGKTLSDSLSRHKAFSP------LYVSLIQAGETGGFLDESLSRLSDYLQTVSEFRSYL 166 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + A + + V + + + + + + M + Sbjct: 167 FTALIYPMILAGMGSLSLVLMLLYVVPRFESFFQEMGQELFWSTRMLLWISQMFRSYWWV 226 Query: 180 RLM 182 + Sbjct: 227 LAL 229 >gi|314932288|gb|EFS96119.1| type II secretion system F domain protein [Propionibacterium acnes HL067PA1] Length = 288 Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 61/169 (36%), Gaps = 1/169 (0%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ++ + + + G + AV + ++ + +++ + E+ R Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + E +++ + S L ++ ++ R + +V+A + + S Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I + + + ++ L P G +L+ VA +I ++ M Sbjct: 224 QITLVTIAMFGGLLVIGRSFLAPL-ATPPGQVLVAVAVVMYVIALVQMY 271 >gi|254524287|ref|ZP_05136342.1| general secretion pathway protein F [Stenotrophomonas sp. SKA14] gi|219721878|gb|EED40403.1| general secretion pathway protein F [Stenotrophomonas sp. SKA14] Length = 399 Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 59/167 (35%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 + A + + A LP+ A++ ++ Q+ V V G L+ +++ Sbjct: 61 ELAWATRQLASLLAASLPLESALSAVIEQAERPHVAQALTAVRADVRAGQRLTVALAARP 120 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R P + + G+L+ + L+ + +R ++AKV + A + + Sbjct: 121 RDFPP-----IYRALVGAGEDSGDLARVMERLADYIEERNALQAKVLTAFIYPAAISLVS 175 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMV 178 ++ + + V ++L +A G+ V Sbjct: 176 VAIVIFLLSYVVPQVVTAFVQARQTLPMLTQVMLAASAFVRSWGVWV 222 Score = 37.4 bits (85), Expect = 0.89, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 38/130 (29%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P+ A+ + + V G +L ++ Sbjct: 268 FASTLAILLDAGVPLLRALEAARQTLGNALLARCADDVSARVREGAALGAALKV------ 321 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G+L+ L ++ + +A +E + G + Sbjct: 322 QKVYPPILVHLVASGEKTGSLAPLLDRAAQTISREIERRAMALTALLEPTMILVMGGVVL 381 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 382 TIVLAVLMPI 391 >gi|323486356|ref|ZP_08091681.1| hypothetical protein HMPREF9474_03432 [Clostridium symbiosum WAL-14163] gi|323695020|ref|ZP_08109166.1| hypothetical protein HMPREF9475_04030 [Clostridium symbiosum WAL-14673] gi|323400338|gb|EGA92711.1| hypothetical protein HMPREF9474_03432 [Clostridium symbiosum WAL-14163] gi|323500916|gb|EGB16832.1| hypothetical protein HMPREF9475_04030 [Clostridium symbiosum WAL-14673] Length = 405 Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 12/169 (7%), Positives = 43/169 (25%), Gaps = 4/169 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D V +G+ + A+ ++ Q+ + + E R Sbjct: 64 RDMSVFCRQFVTLTESGISIVRAMEMLEEQTVNKLLKEAIRETRASVEKGD----TLAGS 119 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G LS + ++ ++ ++ + + + Sbjct: 120 MRHHEKVFPPMFVNLVQAGEEAGKLSLSFERMAAHYEKTAKLQNIIKKAMIYPIILSIVA 179 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + + + + V + + + L+ Sbjct: 180 VIVIIVMLVYIVPMYSDMFVDMDAELPAITRAVVGLSNFMTRYWYIILI 228 Score = 40.9 bits (94), Expect = 0.093, Method: Composition-based stats. Identities = 14/117 (11%), Positives = 34/117 (29%), Gaps = 7/117 (5%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRY 75 + + AG+P+ +A+ + + V E G+ LS + Sbjct: 270 AQFSRNLSTLLSAGVPIIEALEITANTMDNTVYRLAISDAREQVARGIQLSVPLQESG-- 327 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L ++ + + A ++E ++ Sbjct: 328 ----VFPSMVYHMVGIGEETGGLDTMLDKVAEYYEEEVTAATEQAAAALEPLVIIFM 380 >gi|90416867|ref|ZP_01224796.1| general secretion pathway protein F [marine gamma proteobacterium HTCC2207] gi|90331214|gb|EAS46458.1| general secretion pathway protein F [marine gamma proteobacterium HTCC2207] Length = 402 Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 63/165 (38%), Gaps = 8/165 (4%) Query: 7 KRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +R A+ + D L + +GLP+ DA+ + + Q+ + RR++++ + Sbjct: 56 RREARVNNFDLSLLLQQQAILIESGLPLEDALRMTIEQAE---TEKQRRMLQSWRSEIIE 112 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S S +R P + ISV + G L + L ++ L + + + Sbjct: 113 GRSFSDALRRSPYKIPDSIVAGISVGEESGH-LHKVLMRIAEDLESSAENRKTISRAMIY 171 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 +I + V+ ++ + P + ++ R L+ Sbjct: 172 PAT---LISTSIIVVAIMMVWVVPKITAIFMSSNRELPLITRIIV 213 >gi|107022598|ref|YP_620925.1| type II secretion system protein [Burkholderia cenocepacia AU 1054] gi|105892787|gb|ABF75952.1| type II secretion system protein [Burkholderia cenocepacia AU 1054] Length = 321 Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 57/158 (36%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 ++ R + P +D++ GL + ++ V+ + E Sbjct: 158 VRRRATARRQSLAAELPLLVDMLRLLQGVGLSLDQSIQVVTHDFQTMLPVLSWELGVAQR 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+ R+ +++ ++ + GG + E L LR+ + Sbjct: 218 QFAAGRTREQSLQRLTNSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREGRRATL 277 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + Q + K + +I +L + L+ PG M VL Sbjct: 278 REQIGRLTVKMTGVMIVTLLPAL--LIVTAGPGIMTVL 313 >gi|304412464|ref|ZP_07394070.1| Type II secretion system F domain protein [Shewanella baltica OS183] gi|307307123|ref|ZP_07586861.1| Type II secretion system F domain protein [Shewanella baltica BA175] gi|304349106|gb|EFM13518.1| Type II secretion system F domain protein [Shewanella baltica OS183] gi|306910362|gb|EFN40793.1| Type II secretion system F domain protein [Shewanella baltica BA175] Length = 423 Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 16/172 (9%), Positives = 50/172 (29%), Gaps = 8/172 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73 D I + AG+P+ + ++ E ++ G+ LS++ Sbjct: 83 DIAMMTRQIATMLAAGVPLVTTIELLGRGHEKAKMRELLANILSEIQSGIPLSDA----- 137 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G+L ++ + +K+K++ A + Sbjct: 138 MRPHRRYFDELYVDLVAAGEHSGSLDLVFDRVATYREKTEALKSKIKKAMFYPAAVVIVA 197 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183 + + V + ++L ++ + + ++ Sbjct: 198 ILVTTLLLLFVVPQFEDIFKGFGAELPAFTQLVLHISRGLQSSWYIFLAAIV 249 >gi|90406745|ref|ZP_01214938.1| Flp pilus assembly protein TadC [Psychromonas sp. CNPT3] gi|90312198|gb|EAS40290.1| Flp pilus assembly protein TadC [Psychromonas sp. CNPT3] Length = 288 Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 65/155 (41%), Gaps = 5/155 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQH 60 K+ T+ P+ALD++V V +GL + + + + ++ Sbjct: 130 RAKRITSNIALATPDALDLMVICVESGLTLEAMFGRVGQEMYQICPELSRQWLITEVELR 189 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L S ++ + + E+ +S + GG++++ L ++ R ++ + + + Sbjct: 190 LLEPRSRALKNLANRCAVVEIENLVISLSQAEKYGGSIAQTLRLIATDSRQKQYLSLEEK 249 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + AK + ++ + + +V +P ++++L Sbjct: 250 VGKIPAKMALPLVLLV--MLPVVVLIVAPTFISLL 282 >gi|116689547|ref|YP_835170.1| type II secretion system protein [Burkholderia cenocepacia HI2424] gi|116647636|gb|ABK08277.1| type II secretion system protein [Burkholderia cenocepacia HI2424] Length = 332 Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 57/158 (36%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 ++ R + P +D++ GL + ++ V+ + E Sbjct: 169 VRRRATARRQSLAAELPLLVDMLRLLQGVGLSLDQSIQVVTHDFQTMLPVLSWELGVAQR 228 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+ R+ +++ ++ + GG + E L LR+ + Sbjct: 229 QFAAGRTREQSLQRLTNSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREGRRATL 288 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + Q + K + +I +L + L+ PG M VL Sbjct: 289 REQIGRLTVKMTGVMIVTLLPAL--LIVTAGPGIMTVL 324 >gi|153002446|ref|YP_001368127.1| type II secretion system protein [Shewanella baltica OS185] gi|151367064|gb|ABS10064.1| type II secretion system protein [Shewanella baltica OS185] Length = 423 Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 16/172 (9%), Positives = 50/172 (29%), Gaps = 8/172 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73 D I + AG+P+ + ++ E ++ G+ LS++ Sbjct: 83 DIAMMTRQIATMLAAGVPLVTTIELLGRGHEKAKMRELLANILSEIQSGIPLSDA----- 137 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G+L ++ + +K+K++ A + Sbjct: 138 MRPHRRYFDELYVDLVAAGEHSGSLDLVFDRVATYREKTEALKSKIKKAMFYPAAVVIVA 197 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183 + + V + ++L ++ + + ++ Sbjct: 198 ILVTTLLLLFVVPQFEDIFKGFGAELPAFTQLVLHISRGLQSSWYIFLAAIV 249 >gi|54297435|ref|YP_123804.1| pilus assembly protein PilC [Legionella pneumophila str. Paris] gi|53751220|emb|CAH12631.1| pilus assembly protein PilC [Legionella pneumophila str. Paris] Length = 406 Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 23/187 (12%), Positives = 57/187 (30%), Gaps = 14/187 (7%) Query: 2 KHLIKKRTAKFLD--------DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEF 52 ++KKR F D + + +G+P+ A ++ QS+ ++ Sbjct: 47 NKVVKKRKPLFDRKNKKITQADITVFSRQLATMIESGIPLVQAFDIVAKGQSNKRLKDLI 106 Query: 53 RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112 + GL+L+ES+ + + + + G+L L ++ Sbjct: 107 ETIKHDIETGLTLAESLIKHPL-----YFNELFCNLVDAGEKSGSLDIMLDKVATYKEKI 161 Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 + +K K++ A + + + V D + + Sbjct: 162 EIIKKKIKKALTYPIAVMVVALLVTAGLLIYVVPQFESLFKGFGADLPAMTRAVITMSEF 221 Query: 173 LIGIMVM 179 + + Sbjct: 222 MQAYWYI 228 Score = 40.1 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 14/136 (10%), Positives = 41/136 (30%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRM 72 + + AGLP+ +A+ + G + + + ++ E G + ++ Sbjct: 271 AAIARFARTLSITFAAGLPLVEALKSVAGATGNIIYAKATDKIREEVATGQQMFIAMEN- 329 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L + L+ ++ + N + +E + + Sbjct: 330 -----THLFPNMVIQMVAIGEESGALEKMLSKVADFYEEEVNNAVDALSSLLEPIIMSIL 384 Query: 133 IGSLPFCVSTLVYFTS 148 + V + Sbjct: 385 GILVGGLVVAMYLPIF 400 >gi|330909369|gb|EGH37883.1| general secretion pathway protein F [Escherichia coli AA86] Length = 398 Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 27/198 (13%), Positives = 60/198 (30%), Gaps = 29/198 (14%) Query: 5 IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62 +K R + + + A LP+ +++AVI QSS+ + +V G Sbjct: 49 VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLADVLNQVRSAILEG 108 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS+++ + + G L+ L L+ +R+ +++K+ Sbjct: 109 HPLSDALQHFPTL-----FDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQS 163 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP-------------------RGHM 163 + + V L+ P ++ G Sbjct: 164 LIYP---CMLTTVAIVVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRTGPT 220 Query: 164 LLGVAAAFMLIGIMVMRL 181 LL + + ++ Sbjct: 221 LLATVFIVAVGFWLWLKR 238 >gi|323966491|gb|EGB61924.1| general secretion pathway protein F [Escherichia coli M863] gi|327251743|gb|EGE63429.1| general secretion pathway protein F [Escherichia coli STEC_7v] Length = 407 Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 50/160 (31%), Gaps = 9/160 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 V+ L+ P + + A M Sbjct: 183 TG---VVTILLTAVVPKIIEQFDHLGLALPASTRALIAMS 219 >gi|300115459|ref|YP_003762034.1| type II secretion system F domain-containing protein [Nitrosococcus watsonii C-113] gi|299541396|gb|ADJ29713.1| Type II secretion system F domain protein [Nitrosococcus watsonii C-113] Length = 410 Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 61/178 (34%), Gaps = 6/178 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60 K L ++ A ++ + +RAGLP+ A ++++ PVR ++ E Sbjct: 59 KRLFGRKKAVRQNEVAVLTGELATLLRAGLPLDRAFSILMEIAEEGPVRQLLSQLQEQVR 118 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+E++ + S + + GG L L L+ + K ++ V Sbjct: 119 GGSSLAEAME-----TQTETFSPLYISMIRAGEAGGALDVILGRLADFMERSKALRNAVT 173 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + + G + T V + +AA +L Sbjct: 174 SALIYPAILVGVAGLSVIILLTFVVPQFQQLFEDAGKALPVATQIVIAAGNLLQNYWW 231 >gi|148269965|ref|YP_001244425.1| type II secretion system protein [Thermotoga petrophila RKU-1] gi|170288650|ref|YP_001738888.1| type II secretion system protein [Thermotoga sp. RQ2] gi|147735509|gb|ABQ46849.1| type II secretion system protein [Thermotoga petrophila RKU-1] gi|170176153|gb|ACB09205.1| type II secretion system protein [Thermotoga sp. RQ2] Length = 399 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 57/183 (31%), Gaps = 22/183 (12%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + AG+ + +A+ ++ Q+ S R + + G SL+E+ + Sbjct: 61 EIATFCRQLSIMISAGIRIKEALNILARQTVFSKRFRKVILEIALSVETGDSLAEAFRKT 120 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + GG L L + K ++ +V++ + Sbjct: 121 G------VFDSVLISMLEAGEEGGVLDRTLKRAADFYESMKRLQDEVKSAMAYPLFVLFF 174 Query: 133 IGSLPFCVSTLV-----------YFTSPGYMNVLINDPR---GHMLLGVAAAFMLIGIMV 178 + +S + SP ++L + V ++ GI V Sbjct: 175 AVVIVLVISFYILPNLVRAFGTSIPLSPTIQSLLKANEFLSENWPWFSVLVVGIIAGIFV 234 Query: 179 MRL 181 + Sbjct: 235 LMK 237 >gi|256020058|ref|ZP_05433923.1| type IV pilin biogenesis protein [Shigella sp. D9] gi|332281207|ref|ZP_08393620.1| assembly protein in type IV pilin biogenesis transmembrane protein [Shigella sp. D9] gi|332103559|gb|EGJ06905.1| assembly protein in type IV pilin biogenesis transmembrane protein [Shigella sp. D9] Length = 400 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 21/182 (11%), Positives = 53/182 (29%), Gaps = 22/182 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + + + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKALRQLTDKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLM 235 Query: 180 RL 181 R Sbjct: 236 RR 237 >gi|217316901|gb|ACK37860.1| PilC [Vibrio vulnificus] Length = 408 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 16/154 (10%), Positives = 45/154 (29%), Gaps = 9/154 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D + + G+P+ ++ ++ ++S V + G LS+++ Sbjct: 68 KDITLLTRQLATMLTTGVPILQSLKLVADNHRKAEMKSILASVSKAVEAGTPLSKALRSA 127 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + GNL + L+ + ++AKV + + Sbjct: 128 S-----PQFDGIYVDLVATGEQSGNLDQVFERLAFYREKNEQLRAKVIKALIYP---CMV 179 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 + ++ P + + Sbjct: 180 VLVALGVSYLMLTKVIPEFRKMFTGFGAELPWFT 213 Score = 35.5 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 11/136 (8%), Positives = 37/136 (27%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + S AG+P+ ++ + + + V G+ + ++ Sbjct: 272 AAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAAGMPMYIAMRN- 330 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G + + L ++ I + +E ++ Sbjct: 331 -----SLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFL 385 Query: 133 IGSLPFCVSTLVYFTS 148 + V+ + Sbjct: 386 GVVVGGLVTAMYLPIF 401 >gi|148359056|ref|YP_001250263.1| type IV pilus assembly protein PilC [Legionella pneumophila str. Corby] gi|296107105|ref|YP_003618805.1| type IV pilus assembly protein PilC [Legionella pneumophila 2300/99 Alcoy] gi|148280829|gb|ABQ54917.1| (type IV) pilus assembly protein PilC [Legionella pneumophila str. Corby] gi|295649006|gb|ADG24853.1| type IV pilus assembly protein PilC [Legionella pneumophila 2300/99 Alcoy] Length = 406 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 23/187 (12%), Positives = 57/187 (30%), Gaps = 14/187 (7%) Query: 2 KHLIKKRTAKFLD--------DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEF 52 ++KKR F D + + +G+P+ A ++ QS+ ++ Sbjct: 47 NKVVKKRKPLFDRKNKKITQADITVFSRQLATMIESGIPLVQAFDIVAKGQSNKRLKDLI 106 Query: 53 RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112 + GL+L+ES+ + + + + G+L L ++ Sbjct: 107 ETIKHDIETGLTLAESLIKHPL-----YFNELFCNLVDAGEKSGSLDIMLDKVATYKEKI 161 Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 + +K K++ A + + + V D + + Sbjct: 162 EIIKKKIKKALTYPIAVMVVALLVTAGLLIYVVPQFESLFKGFGADLPAMTRAVITMSEF 221 Query: 173 LIGIMVM 179 + + Sbjct: 222 MQAYWYI 228 Score = 40.1 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 14/136 (10%), Positives = 41/136 (30%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRM 72 + + AGLP+ +A+ + G + + + ++ E G + ++ Sbjct: 271 AAIARFARTLSITFAAGLPLVEALKSVAGATGNIIYAKATDKIREEVATGQQMFIAMEN- 329 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L + L+ ++ + N + +E + + Sbjct: 330 -----THLFPNMVIQMVAIGEESGALEKMLSKVADFYEEEVNNAVDALSSLLEPIIMSIL 384 Query: 133 IGSLPFCVSTLVYFTS 148 + V + Sbjct: 385 GILVGGLVVAMYLPIF 400 >gi|37680964|ref|NP_935573.1| type IV pilus (Tfp) assembly protein PilC [Vibrio vulnificus YJ016] gi|37199714|dbj|BAC95544.1| type IV pilus (Tfp) assembly protein PilC [Vibrio vulnificus YJ016] Length = 408 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 16/154 (10%), Positives = 45/154 (29%), Gaps = 9/154 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D + + G+P+ ++ ++ ++S V + G LS+++ Sbjct: 68 KDITLLTRQLSTMLTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTPLSKALRSA 127 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + GNL + L+ + ++AKV + + Sbjct: 128 S-----PQFDGIYVDLVATGEQSGNLDQVFERLAFYREKNEQLRAKVIKALIYP---CMV 179 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 + ++ P + + Sbjct: 180 VLVALGVSYLMLTQVIPEFRKMFTGFGAELPWFT 213 Score = 35.9 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 11/136 (8%), Positives = 37/136 (27%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + S AG+P+ ++ + + + V G+ + ++ Sbjct: 272 AAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAAGMPMYIAMRN- 330 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G + + L ++ I + +E ++ Sbjct: 331 -----SLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFL 385 Query: 133 IGSLPFCVSTLVYFTS 148 + V+ + Sbjct: 386 GVVVGGLVTAMYLPIF 401 >gi|323135892|ref|ZP_08070975.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242] gi|322398983|gb|EFY01502.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242] Length = 405 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 20/185 (10%), Positives = 65/185 (35%), Gaps = 17/185 (9%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + +A +P+ ++ ++ +S +R + ++ G SLS+++S+ Sbjct: 65 AQIASFTREFATLEQANVPLDQSLRILSAQSASPVLRDLAQDILTQIVDGASLSDAMSKR 124 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G + A+ +L+ +L + ++ ++Q+ + + Sbjct: 125 PDVFG-----REYINVVREGETVGKVGAAMTDLADMLERQLELRGRIQSALVYPALLITL 179 Query: 133 IGSLPFCVSTLVYFTS-----------PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 V + + P + +I+ +G+ ++ + ++R Sbjct: 180 ALISTGVVLGTLVPSIAPIFADNGKPMPSGLQFIIDTEANAGTIGIVLGVIVATLFLLRR 239 Query: 182 MINFD 186 M Sbjct: 240 MAQTR 244 Score = 36.6 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 44/130 (33%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + ++AG+P+ + + + +E VIE G LS S+ + P Sbjct: 273 FARTLGSMLKAGVPLLQGLESARAAVVNHYLNAELAGVIEAVRGGAHLSGSLGGVAFIPP 332 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L + L ++ + + + + + I G + Sbjct: 333 ------VAPQMISIGEETGQLDDMLLRVATMFERQTQRSIERAMGLLTPVLTIAIAGVVG 386 Query: 138 FCVSTLVYFT 147 + T++ Sbjct: 387 GLIMTVMDAV 396 >gi|312961923|ref|ZP_07776420.1| general secretion pathway protein F [Pseudomonas fluorescens WH6] gi|311283733|gb|EFQ62317.1| general secretion pathway protein F [Pseudomonas fluorescens WH6] Length = 400 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 61/166 (36%), Gaps = 11/166 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + AG P+ ++ +++ Q R+ R+ E G LS+++ Sbjct: 62 AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGQPLSKALEEE 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 S + + GG L L LS L + ++ +V + ++ Sbjct: 122 GSQ-----FSPLYLSMVRAGEAGGALENTLRQLSDYLERSQLLRGEVINALIYPA---FL 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + ++ L+ + P ++ + + G + + + +G + Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILGLGQFL 217 >gi|313773054|gb|EFS39020.1| type II secretion system F domain protein [Propionibacterium acnes HL074PA1] gi|313831097|gb|EFS68811.1| type II secretion system F domain protein [Propionibacterium acnes HL007PA1] gi|314980646|gb|EFT24740.1| type II secretion system F domain protein [Propionibacterium acnes HL072PA2] gi|315090039|gb|EFT62015.1| type II secretion system F domain protein [Propionibacterium acnes HL072PA1] gi|315096612|gb|EFT68588.1| type II secretion system F domain protein [Propionibacterium acnes HL038PA1] gi|327330162|gb|EGE71912.1| membrane spanning protein [Propionibacterium acnes HL096PA3] gi|327333258|gb|EGE74979.1| membrane spanning protein [Propionibacterium acnes HL097PA1] gi|327443397|gb|EGE90051.1| type II secretion system F domain protein [Propionibacterium acnes HL043PA1] gi|327447489|gb|EGE94143.1| type II secretion system F domain protein [Propionibacterium acnes HL043PA2] Length = 288 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 61/169 (36%), Gaps = 1/169 (0%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ++ + + + G + AV + ++ + +++ + E+ R Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + E +++ + S L ++ ++ R + +V+A + + S Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I + + + ++ L P G +L+ VA +I ++ M Sbjct: 224 QITLVTIAMFGGLLVIGRSFLAPL-ATPPGQVLVAVAVVMYVIALVQMY 271 >gi|240136824|ref|YP_002961291.1| Type II secretion system protein [Methylobacterium extorquens AM1] gi|240006788|gb|ACS38014.1| Type II secretion system protein [Methylobacterium extorquens AM1] Length = 404 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 23/159 (14%), Positives = 51/159 (32%), Gaps = 5/159 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L V AGL V A+ ++ Q+S ++ ++E G SLS +++ + P Sbjct: 71 FLREFGTLVGAGLTVDRALRLVERQASAALKPVLADILERVVAGASLSRAMAAHPQAFPP 130 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 I + G L L +L+ + R ++ + + + + Sbjct: 131 D-----MVDIVRAGEATGTLVAVLGSLTGSIERRDAVRRHLTSAMIYPALLVLMAVGTLV 185 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + ++ P + + A + Sbjct: 186 MIVVVLVPALAPLFEGSGRAPPLTIRVAAALGDWVGAFW 224 >gi|284161834|ref|YP_003400457.1| type II secretion system protein [Archaeoglobus profundus DSM 5631] gi|284011831|gb|ADB57784.1| type II secretion system protein [Archaeoglobus profundus DSM 5631] Length = 617 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 63/148 (42%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + + ++L P + + +G+P+ A++++ + P+R E R++ Sbjct: 399 LHEIRVRSVGRYLRYIPIFFNRLATINESGVPIYRAISILAKTDTSPLRDEIRKIKTDID 458 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 GL LS + R + + +V+ T+++ + GNL+E L ++ + +K + Sbjct: 459 WGLDLSRAFVRFANRIRVFDVTRVVTMLNEAMKTTGNLTEVLVISAKEASRSELIKRERY 518 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTS 148 M ++ + ++ ++ Sbjct: 519 YSMMTYTIIIYVAFFVFIGITYIISSMF 546 Score = 48.2 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 23/180 (12%), Positives = 60/180 (33%), Gaps = 7/180 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQHL-GLS 64 R +K +A+ + G + + V E R+++ G+ Sbjct: 125 RKSKIDRMLHHAVAFMHALSIGGTDIYRIFKTLAEHQDVYGEVSREVSRIVKDVEYGGMD 184 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +++ V P + F + GG++ L ++ K + Sbjct: 185 LRSALTNAVELSPSENYKEFLHGLITVIDSGGDIRSYLEERVEYFFEKARQSQKAFLELL 244 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A +++ + + ++ + +L+ + ++L V F+ IG + ++ Sbjct: 245 GMMAESYVTALVAAPLFLMII----EIVMLLMGEGNEYVLYAVIYLFIPIGSALFAGIVK 300 >gi|311105840|ref|YP_003978693.1| general secretion pathway protein F [Achromobacter xylosoxidans A8] gi|310760529|gb|ADP15978.1| general secretion pathway protein F [Achromobacter xylosoxidans A8] Length = 401 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 58/167 (34%), Gaps = 6/167 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66 RT D + + A LP+ A++ + Q+ + + V + G LS Sbjct: 56 RTRLSDADLAWLTRQLASLLAASLPLDAALSATLEQAEKKHIAAVLGGVRDDVRAGHKLS 115 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ R + + + G+L++ + L+ + +R +++KV + Sbjct: 116 TALAARPR-----DFPEIYRALIGAGEESGDLAQVMEKLADYIEERNALRSKVLTAFIYP 170 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 A + + + V + + + +A + + Sbjct: 171 AVVACVSVIIVIFLLGYVVPQVVSAFSQAKQELPLLTRIMLALSDYV 217 Score = 35.5 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 34/130 (26%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + +G+ + A+ +D +R G LS Sbjct: 270 FASTLAILSGSGVALLTALEAARRTLGNDVLRQAVDEASARVREGAPLS------ASLGA 323 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L E L ++ L +A +E + G + Sbjct: 324 QKVFPSLLVHLIASGEKTGRLPELLDRGAQNLSRDLERRAMAMTALLEPALILLMGGFVL 383 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 384 LIVLAVMSPI 393 >gi|28899299|ref|NP_798904.1| type IV pilin biogenesis protein PilC [Vibrio parahaemolyticus RIMD 2210633] gi|260363755|ref|ZP_05776530.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus K5030] gi|260879009|ref|ZP_05891364.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus AN-5034] gi|260896384|ref|ZP_05904880.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus Peru-466] gi|260900209|ref|ZP_05908604.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus AQ4037] gi|28807523|dbj|BAC60788.1| type IV pilin biogenesis protein PilC [Vibrio parahaemolyticus RIMD 2210633] gi|308089112|gb|EFO38807.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus Peru-466] gi|308089566|gb|EFO39261.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus AN-5034] gi|308110214|gb|EFO47754.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus AQ4037] gi|308111151|gb|EFO48691.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus K5030] Length = 407 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 19/154 (12%), Positives = 46/154 (29%), Gaps = 9/154 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D I + G+P+ A+ ++ ++S V G +S+++ Sbjct: 67 KDITVFTRQISTMLVTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAMRTA 126 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + GNL+E L+ + ++AKV + + Sbjct: 127 SNHFDPLYTD-----LIATGEQSGNLAEVFERLATYREKNEQLRAKVIKALIYPA---MV 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 I ++ P + + + Sbjct: 179 ILVALGVSFIMLTKVIPEFEKMFVGFGAELPWFT 212 Score = 35.5 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 13/136 (9%), Positives = 37/136 (27%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72 + S AG+P+ ++ S + V G+ + ++ Sbjct: 271 AAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNMHYQLAIEEVYRDTAAGMPMYVAMRN- 329 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G L + L ++ I + + +E ++ Sbjct: 330 -----CNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFL 384 Query: 133 IGSLPFCVSTLVYFTS 148 + V+ + Sbjct: 385 GIVVGGLVTAMYLPIF 400 >gi|194365986|ref|YP_002028596.1| general secretion pathway protein F [Stenotrophomonas maltophilia R551-3] gi|194348790|gb|ACF51913.1| general secretion pathway protein F [Stenotrophomonas maltophilia R551-3] Length = 399 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 25/176 (14%), Positives = 59/176 (33%), Gaps = 8/176 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 + A + + A LP+ A+ ++ Q+ V V G L+ +++ Sbjct: 61 ELAWATRQLASLLAASLPLEAALTAVIEQAERPHVAQALTAVRADVRAGQRLTVALAARP 120 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R P + + G+L+ + L+ + +R ++AKV + A + + Sbjct: 121 RDFPP-----IYRALVGAGEDSGDLARVMERLADYIEERNALQAKVLTAFIYPAAISLVS 175 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMINFDV 187 ++ + + V ++L +A G+ + V Sbjct: 176 VAIVIFLLSYVVPQVVTAFVQARQTLPMLTQVMLAASAFVRSWGVWAGLGIAALVV 231 Score = 37.4 bits (85), Expect = 0.83, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 38/130 (29%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P+ A+ + + V G +L ++ Sbjct: 268 FASTLAILLDAGVPLLRALEAARQTLGNALLARCADDVSARVREGAALGAALKV------ 321 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G+L+ L ++ + +A +E + G + Sbjct: 322 QKVYPPILVHLVASGEKTGSLAPLLDRAAQTISREIERRAMALTALLEPTMILVMGGVVL 381 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 382 TIVLAVLMPI 391 >gi|169334873|ref|ZP_02862066.1| hypothetical protein ANASTE_01279 [Anaerofustis stercorihominis DSM 17244] gi|169257611|gb|EDS71577.1| hypothetical protein ANASTE_01279 [Anaerofustis stercorihominis DSM 17244] Length = 345 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 20/166 (12%), Positives = 53/166 (31%), Gaps = 10/166 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + L+ + V+AG+P+ +++ ++ S+ E + L Sbjct: 10 DRYISSFLEQLYLLVKAGVPLDESIGMLSKGESNKESKELLNSLLKDLLEG-----KDLH 64 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + T + + G+L + L +L + ++ A + Sbjct: 65 TAIDNSKVFPHYMTKMIKAGETTGHLEDTLKSLYEYYDRMDRLNNSIKNAVFYPSILAVM 124 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + ++ + T V + + G + A + IG + Sbjct: 125 MLAVILVLITKVMPIFSEVYEQMGSTLTG-----FSLAMLNIGKFL 165 >gi|26249922|ref|NP_755962.1| putative general secretion pathway protein F [Escherichia coli CFT073] gi|91212764|ref|YP_542750.1| putative general secretion pathway protein F [Escherichia coli UTI89] gi|110643566|ref|YP_671296.1| putative general secretion pathway protein F [Escherichia coli 536] gi|117625605|ref|YP_858928.1| putative general secretion pathway protein F [Escherichia coli APEC O1] gi|191171599|ref|ZP_03033147.1| general secretion pathway protein F [Escherichia coli F11] gi|218560388|ref|YP_002393301.1| general secretory pathway component, cryptic [Escherichia coli S88] gi|218691612|ref|YP_002399824.1| general secretory pathway component, cryptic [Escherichia coli ED1a] gi|227883458|ref|ZP_04001263.1| general secretion pathway protein F [Escherichia coli 83972] gi|237703057|ref|ZP_04533538.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|300974006|ref|ZP_07172413.1| general secretion pathway protein F [Escherichia coli MS 200-1] gi|300979898|ref|ZP_07174774.1| general secretion pathway protein F [Escherichia coli MS 45-1] gi|301046098|ref|ZP_07193276.1| general secretion pathway protein F [Escherichia coli MS 185-1] gi|306816330|ref|ZP_07450468.1| general secretory pathway component, cryptic [Escherichia coli NC101] gi|331659617|ref|ZP_08360555.1| general secretion pathway protein F [Escherichia coli TA206] gi|26110350|gb|AAN82536.1|AE016767_296 Putative general secretion pathway protein F [Escherichia coli CFT073] gi|91074338|gb|ABE09219.1| putative general secretion pathway protein F [Escherichia coli UTI89] gi|110345158|gb|ABG71395.1| putative general secretion pathway protein F [Escherichia coli 536] gi|115514729|gb|ABJ02804.1| putative general secretion pathway protein F [Escherichia coli APEC O1] gi|190908226|gb|EDV67817.1| general secretion pathway protein F [Escherichia coli F11] gi|218367157|emb|CAR04931.1| general secretory pathway component, cryptic [Escherichia coli S88] gi|218429176|emb|CAR10131.2| general secretory pathway component, cryptic [Escherichia coli ED1a] gi|226902321|gb|EEH88580.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|227839602|gb|EEJ50068.1| general secretion pathway protein F [Escherichia coli 83972] gi|294490049|gb|ADE88805.1| general secretion pathway protein F [Escherichia coli IHE3034] gi|300301924|gb|EFJ58309.1| general secretion pathway protein F [Escherichia coli MS 185-1] gi|300309016|gb|EFJ63536.1| general secretion pathway protein F [Escherichia coli MS 200-1] gi|300409409|gb|EFJ92947.1| general secretion pathway protein F [Escherichia coli MS 45-1] gi|305850726|gb|EFM51183.1| general secretory pathway component, cryptic [Escherichia coli NC101] gi|307555414|gb|ADN48189.1| general secretory pathway component [Escherichia coli ABU 83972] gi|307628362|gb|ADN72666.1| general secretory pathway component, cryptic [Escherichia coli UM146] gi|315284598|gb|EFU44043.1| general secretion pathway protein F [Escherichia coli MS 110-3] gi|315292356|gb|EFU51708.1| general secretion pathway protein F [Escherichia coli MS 153-1] gi|315298625|gb|EFU57880.1| general secretion pathway protein F [Escherichia coli MS 16-3] gi|323950241|gb|EGB46123.1| general secretion pathway protein F [Escherichia coli H252] gi|323954550|gb|EGB50333.1| general secretion pathway protein F [Escherichia coli H263] gi|324014943|gb|EGB84162.1| general secretion pathway protein F [Escherichia coli MS 60-1] gi|331052832|gb|EGI24865.1| general secretion pathway protein F [Escherichia coli TA206] Length = 398 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 26/198 (13%), Positives = 60/198 (30%), Gaps = 29/198 (14%) Query: 5 IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLG 62 +K R + + + A LP+ +++AVI Q S++ + +V G Sbjct: 49 VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNNRLADVLNQVRSAILEG 108 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS+++ + + G L+ L L+ +R+ +++K+ Sbjct: 109 HPLSDALQHFPTL-----FDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQS 163 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP-------------------RGHM 163 + + V L+ P ++ G Sbjct: 164 LIYP---CMLTTVAIVVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRTGPT 220 Query: 164 LLGVAAAFMLIGIMVMRL 181 LL + + ++ Sbjct: 221 LLATVFIVAVGFWLWLKR 238 >gi|332098955|gb|EGJ03906.1| bacterial type II secretion system protein F domain protein [Shigella boydii 3594-74] Length = 400 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 55/182 (30%), Gaps = 22/182 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ GQ + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAGQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLM 235 Query: 180 RL 181 R Sbjct: 236 RR 237 >gi|82542710|ref|YP_406657.1| type IV pilin biogenesis protein [Shigella boydii Sb227] gi|81244121|gb|ABB64829.1| HofC [Shigella boydii Sb227] Length = 400 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 55/182 (30%), Gaps = 22/182 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ GQ + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAGQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEA 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLM 235 Query: 180 RL 181 R Sbjct: 236 RR 237 >gi|217316896|gb|ACK37856.1| PilC [Vibrio vulnificus] Length = 408 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 16/154 (10%), Positives = 45/154 (29%), Gaps = 9/154 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D + + G+P+ ++ ++ ++S V + G LS+++ Sbjct: 68 KDITLLTRQLATMLTTGVPILQSLKLVADNHRKAEMKSILASVSKAVEAGTPLSKALRSA 127 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + GNL + L+ + ++AKV + + Sbjct: 128 S-----PQFDGIYVDLVATGEQSGNLDQVFERLAFYREKNEQLRAKVIKALIYP---CMV 179 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 + ++ P + + Sbjct: 180 VLVALGVSYLMLTKVIPEFRKMFTGFGAELPWFT 213 Score = 35.9 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 11/136 (8%), Positives = 37/136 (27%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + S AG+P+ ++ + + + V G+ + ++ Sbjct: 272 AAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAAGMPMYIAMRN- 330 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G + + L ++ I + +E ++ Sbjct: 331 -----SLAFPELVLQMVMIGEESGQIDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFL 385 Query: 133 IGSLPFCVSTLVYFTS 148 + V+ + Sbjct: 386 GVVVGGLVAAMYLPIF 401 >gi|153838722|ref|ZP_01991389.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus AQ3810] gi|149747882|gb|EDM58760.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus AQ3810] Length = 407 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 19/154 (12%), Positives = 46/154 (29%), Gaps = 9/154 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D I + G+P+ A+ ++ ++S V G +S+++ Sbjct: 67 KDITVFTRQISTMLVTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAMRTA 126 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + GNL+E L+ + ++AKV + + Sbjct: 127 SNHFDPLYTD-----LIATGEQSGNLAEVFERLATYREKNEQLRAKVIKALIYPA---MV 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 I ++ P + + + Sbjct: 179 ILVALGVSFIMLTKVIPEFEKMFVGFGAELPWFT 212 Score = 35.5 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 13/136 (9%), Positives = 37/136 (27%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72 + S AG+P+ ++ S + V G+ + ++ Sbjct: 271 AAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNMHYQLAIEEVYRDTAAGMPMYVAMRN- 329 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G L + L ++ I + + +E ++ Sbjct: 330 -----CNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFL 384 Query: 133 IGSLPFCVSTLVYFTS 148 + V+ + Sbjct: 385 GIVVGGLVTAMYLPIF 400 >gi|196047886|ref|ZP_03115064.1| conserved membrane protein, putative [Bacillus cereus 03BB108] gi|196021142|gb|EDX59871.1| conserved membrane protein, putative [Bacillus cereus 03BB108] Length = 327 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 80/187 (42%), Gaps = 1/187 (0%) Query: 1 MKHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 + H+ +K+ D + + S++ V D+V + ++ E + Sbjct: 138 LLHMHRKKYKFVEIDRISIYMKTLSNSLQILGNVVDSVEEVKPLVHSSIKEELNKATIKL 197 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G S++ES + + P QE+ FF ++ V + GG EAL +++ +RK + ++ Sbjct: 198 QQGKSVNESFMSLDKKYPYQELKFFHEMLDVADKNGGRNIEALESIAVDFEERKVKQMRL 257 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A +++ + + + F P +L++ P G ++ A +L + + Sbjct: 258 YAETIQGTKAFRNSALTVLAIPFIFKFFVPDAYGMLMSTPLGSIVFVSIACVVLYCYIRI 317 Query: 180 RLMINFD 186 + + ++D Sbjct: 318 QKLADWD 324 >gi|293412746|ref|ZP_06655414.1| general secretion pathway protein F [Escherichia coli B354] gi|291468393|gb|EFF10886.1| general secretion pathway protein F [Escherichia coli B354] Length = 398 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 27/198 (13%), Positives = 60/198 (30%), Gaps = 29/198 (14%) Query: 5 IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62 +K R + + + A LP+ +++AVI QSS+ + +V G Sbjct: 49 VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLADVLNQVRSAILEG 108 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS+++ + + G L+ L L+ +R+ +++K+ Sbjct: 109 HPLSDALQHFPTL-----FDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQS 163 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND-------------------PRGHM 163 + + V L+ P ++ G Sbjct: 164 LIYP---CMLTAVAIVVVIILLTAVVPKITKQFVHMKQQLPLSTRILLGLSDTLQHTGPT 220 Query: 164 LLGVAAAFMLIGIMVMRL 181 LL + + ++ Sbjct: 221 LLATVFIVAVGFWLWLKR 238 >gi|288574999|ref|ZP_06393356.1| type II secretion system protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570740|gb|EFC92297.1| type II secretion system protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 418 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 60/162 (37%), Gaps = 7/162 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + V+AG+ + ++ ++ Q+ + + + RV + G SLS+S+ R + P Sbjct: 85 FFRQLATMVKAGVSLGASLDILSEQTKNKILGNGIVRVKKMVDGGNSLSQSMGRQSVFPP 144 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + I + GG+L +L ++ + + +K K+ + + Sbjct: 145 MS------ISIIQAGEEGGSLDVSLERVADFMERQDALKKKIVSAVTYPAVVMAFSLFVL 198 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + T+V + L + + + V+ Sbjct: 199 YLLITVVMPKFATVFSNLNIELPWATRTMFSFGLWMASNWVI 240 Score = 38.6 bits (88), Expect = 0.36, Method: Composition-based stats. Identities = 18/145 (12%), Positives = 45/145 (31%), Gaps = 7/145 (4%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET-QHLGLSLSESIS 70 F + + +G+P+ A+ + + + V + +E G L +S Sbjct: 280 FRAGMARSTRTLASLTHSGIPILQALDMTSRIAGNVVFERAFKYLEQAARKGAGLGDSAR 339 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + P+ + + G + E L ++ + K K +E Sbjct: 340 NVKLFPPM------VAHMLRVGEETGQVDEMLNKVADWFELELDEKIKRLTSILEPLLIV 393 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ G + + +L Sbjct: 394 FVGGIVALVALAIFSPIVTAIQEML 418 >gi|307325197|ref|ZP_07604400.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] gi|306889001|gb|EFN19984.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] Length = 303 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 21/184 (11%), Positives = 62/184 (33%), Gaps = 3/184 (1%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 RT + +++ ++ A + AV + +R E ++ + G Sbjct: 100 RAAVARTERLE-ALALWTEMLRDTLSAAAGLEQAVLATADIAPTALRRELSALVVSVRSG 158 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQA 121 L ++ + + ++ + L+ L L+ +R++ M+ ++ A Sbjct: 159 QPLPAALRTFADDADDPLADVVVAALVMAAERQASQLAALLGELADSVREQVAMRQRIDA 218 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + + ++ ++ + + Y++ N G ++L V A + Sbjct: 219 GRASIRTGVRVTVTVTLGMAVGLTVFNRPYLDP-FNTLTGQLVLAVVGALFAASFTWLSA 277 Query: 182 MINF 185 + Sbjct: 278 IGRV 281 >gi|116071988|ref|ZP_01469256.1| fimbrial assembly protein PilC-like [Synechococcus sp. BL107] gi|116065611|gb|EAU71369.1| fimbrial assembly protein PilC-like [Synechococcus sp. BL107] Length = 357 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 17/157 (10%), Positives = 54/157 (34%), Gaps = 6/157 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLS 66 R D + +++G+P++ + +I ++ + +R+ G LS Sbjct: 9 RLKVPQKDLLVFFRQLAVILQSGVPLAQGLILIAENMTNENLSQCVQRISSRLSAGEELS 68 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 S+ + + + + + GG L + L ++ +L +R ++ ++ + Sbjct: 69 LSLRQYPK-----VFEPLTIGLIEAGEAGGILEDVLDRIALLLEERAKIRGQIIGALVYP 123 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 + S+ + + + + + Sbjct: 124 VIVMVLAVSVSLALLIFIVPRFKAMFDGMGAELPALT 160 Score = 36.3 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 38/134 (28%), Gaps = 5/134 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + + D + V +G+P+ D + + SS+ + R L + + Sbjct: 221 EMASMCDTLATLVNSGIPIVDGIERCISASSNELVRRTLR-----ESILLIRQGQELNYS 275 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + G LS L L+ + +ME + G Sbjct: 276 MGRSGVFPKLVISMIKIGEETGQLSFMLEKLAIFYKREVESAVSSLTKAMEPAVVFVVAG 335 Query: 135 SLPFCVSTLVYFTS 148 + V L Sbjct: 336 IVGTIVIALYLPMF 349 >gi|119897093|ref|YP_932306.1| general secretion pathway protein F [Azoarcus sp. BH72] gi|119669506|emb|CAL93419.1| general secretion pathway protein F [Azoarcus sp. BH72] Length = 401 Score = 57.4 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 17/161 (10%), Positives = 50/161 (31%), Gaps = 5/161 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + + AG+P+ +A+ + ++ P + + G +LS++ + Sbjct: 61 RELGAFCAQLAHLLEAGIPLVEALRDLGEGNATPAARPWDDIATALEGGDTLSDACAARA 120 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G L L +L+ L + A ++ +S+ ++ Sbjct: 121 DL-----FDEVFVSLLRAGEQAGRLPAVLHHLAATLERSAQVAAHLRRMSIYPAFVLAVL 175 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 V L ++ + +++ Sbjct: 176 AVAAGTALVFVVPQLSSLFRSLGETLPWQTRALLSLSDLVL 216 >gi|307719946|ref|YP_003891086.1| Type II secretion system F domain-containing protein [Sulfurimonas autotrophica DSM 16294] gi|306978039|gb|ADN08074.1| Type II secretion system F domain protein [Sulfurimonas autotrophica DSM 16294] Length = 402 Score = 57.4 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 19/177 (10%), Positives = 60/177 (33%), Gaps = 11/177 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 D+ ++ + +++GLP+ + + + +S + R + + G SLS + Sbjct: 62 DEVVELMESLHLVIKSGLPLYEGLQELAKESDNKRFRDMMLYIANAINNGQSLSTAFEAY 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G L L + L+ +K K + + + Sbjct: 122 KNVIG-----TIILNLIKIGEETGQLEVTLKRAAEFLKRTITLKKKAKGALIYPTFA--- 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM--LIGIMVMRLMINFDV 187 ++ + + + P +++ + L + + + M ++ + + Sbjct: 174 FVAVLGAMLVWMIYVLPQMLDLFKSMDIKLPALTLGIIAVSNFLSAYWMYMIASIVI 230 Score = 34.3 bits (77), Expect = 7.5, Method: Composition-based stats. Identities = 16/127 (12%), Positives = 47/127 (37%), Gaps = 5/127 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + + ++ +G+P+ +A+ + + V + V +S+ + Sbjct: 273 EYLRLALVSGVPIFNALQSLTDNLKNEVFKQALSV-----STGEVSKGSQISSAFSKTGI 327 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + F+ + + G+L L ++ +R N A+ +E ++ G + + Sbjct: 328 FTPFTVRMIGVGESSGSLDSQLDLIAEHYYERVNYYAENIGKVIEPIVLIFVGGFMALVI 387 Query: 141 STLVYFT 147 + L+ Sbjct: 388 AGLLGPM 394 >gi|315081086|gb|EFT53062.1| type II secretion system F domain protein [Propionibacterium acnes HL078PA1] Length = 288 Score = 57.4 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 61/169 (36%), Gaps = 1/169 (0%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ++ + + + G + AV + ++ + +++ + E+ R Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + E +++ + S L ++ ++ R + +V+A + + S Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I + + + ++ L P G +L+ VA +I ++ M Sbjct: 224 QITLVTIAMFGGLLVIGRSFLAPL-ATPPGQVLVTVAVVMYVIALVQMY 271 >gi|281180362|dbj|BAI56692.1| general secretion pathway protein F [Escherichia coli SE15] Length = 398 Score = 57.4 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 27/198 (13%), Positives = 60/198 (30%), Gaps = 29/198 (14%) Query: 5 IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62 +K R + + + A LP+ +++AVI QSS+ + +V G Sbjct: 49 VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLADVLNQVRSAILEG 108 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS+++ + + G L+ L L+ +R+ +++K+ Sbjct: 109 HPLSDALQHFPTL-----FDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQS 163 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP-------------------RGHM 163 + + V L+ P ++ G Sbjct: 164 LIYP---CMLTTVAIVVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRTGPT 220 Query: 164 LLGVAAAFMLIGIMVMRL 181 LL + + ++ Sbjct: 221 LLATVFIVAVGFWLWLKR 238 >gi|111220778|ref|YP_711572.1| hypothetical protein FRAAL1321 [Frankia alni ACN14a] gi|111148310|emb|CAJ59982.1| putative membrane protein [Frankia alni ACN14a] Length = 316 Score = 57.4 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 60/157 (38%), Gaps = 6/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I +R + L +FP +++ +V AG A+ + + + E R + Sbjct: 160 LTRAIGEREDRMLLEFPTVAELLALAVTAGESAIGALERVSRLTHGELGRELRLALADAR 219 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +L +++ + L ++ F ++V + G L++ L + +R+ + Sbjct: 220 AGATLVQALEGIAARTALAPLTRFVDGMAVAIERGTPLADILRAQAMDVREAG------K 273 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 +EA I +P L + L++ Sbjct: 274 RQLLEAGGRKEIAMMIPVVFLVLPTTVIFAFYPALVS 310 >gi|320155371|ref|YP_004187750.1| type IV fimbrial assembly protein PilC [Vibrio vulnificus MO6-24/O] gi|319930683|gb|ADV85547.1| type IV fimbrial assembly protein PilC [Vibrio vulnificus MO6-24/O] Length = 408 Score = 57.4 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 16/154 (10%), Positives = 45/154 (29%), Gaps = 9/154 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D + + G+P+ ++ ++ ++S V + G LS+++ Sbjct: 68 KDITLLTRQLSTMLTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTPLSKALRSA 127 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + GNL + L+ + ++AKV + + Sbjct: 128 S-----PQFDGIYVDLVATGEQSGNLDQVFERLAFYREKNEQLRAKVIKALIYP---CMV 179 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 + ++ P + + Sbjct: 180 VLVALGVSYLMLTQVIPEFRKMFTGFGAELPWFT 213 Score = 36.3 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 11/136 (8%), Positives = 37/136 (27%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + S AG+P+ ++ + + + V G+ + ++ Sbjct: 272 AAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAAGMPMYIAMRN- 330 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G + + L ++ I + +E ++ Sbjct: 331 -----SLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFL 385 Query: 133 IGSLPFCVSTLVYFTS 148 + V+ + Sbjct: 386 GVVVGGLVAAMYLPIF 401 >gi|192360701|ref|YP_001982854.1| MSHA biogenesis protein MshG [Cellvibrio japonicus Ueda107] gi|190686866|gb|ACE84544.1| MSHA biogenesis protein MshG [Cellvibrio japonicus Ueda107] Length = 406 Score = 57.4 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 16/170 (9%), Positives = 46/170 (27%), Gaps = 6/170 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 + + RAG+P+ + + + + ++E G+ LS ++ Sbjct: 68 ELIMFCRQMHTISRAGIPLVKGLRGLSASIRNYAFQQALNDIVERLEAGVELSSAMRAHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + + G L LS L + ++ + Sbjct: 128 KI-----FNNMIVSMVSVGENAGRLDVVFKQLSEYLERDHSTLKSIKTALRYPSFVLIAM 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 ++ V G + + + + + L++ Sbjct: 183 TVAIAVINIYVIPAFAGLFEKFGAQLPLPTRILITVSDFFVNYWMYILLV 232 Score = 35.5 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 16/139 (11%), Positives = 37/139 (26%), Gaps = 5/139 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + AGLP+S+A+ + +P + R I + Sbjct: 269 RASLARYARSFGLMLNAGLPLSNALELSARAIDNPYLGDKIRAIR-----AGVERGEGLY 323 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 ++ + + + G + LA ++ K + +E + Sbjct: 324 QTHLVSGMFTPLVLQMIAVGEESGQVDALLAEVASFYESEVEYDVKQLSDRIEPIMIVML 383 Query: 133 IGSLPFCVSTLVYFTSPGY 151 G + + Y Sbjct: 384 AGFVTIIALGIFLPMWDMY 402 >gi|313765311|gb|EFS36675.1| type II secretion system F domain protein [Propionibacterium acnes HL013PA1] gi|313772774|gb|EFS38740.1| type II secretion system F domain protein [Propionibacterium acnes HL074PA1] gi|313806749|gb|EFS45254.1| type II secretion system F domain protein [Propionibacterium acnes HL087PA2] gi|313810914|gb|EFS48628.1| type II secretion system F domain protein [Propionibacterium acnes HL083PA1] gi|313815410|gb|EFS53124.1| type II secretion system F domain protein [Propionibacterium acnes HL059PA1] gi|313817518|gb|EFS55232.1| type II secretion system F domain protein [Propionibacterium acnes HL046PA2] gi|313826451|gb|EFS64165.1| type II secretion system F domain protein [Propionibacterium acnes HL063PA1] gi|313828808|gb|EFS66522.1| type II secretion system F domain protein [Propionibacterium acnes HL063PA2] gi|313831679|gb|EFS69393.1| type II secretion system F domain protein [Propionibacterium acnes HL007PA1] gi|313840370|gb|EFS78084.1| type II secretion system F domain protein [Propionibacterium acnes HL086PA1] gi|314916037|gb|EFS79868.1| type II secretion system F domain protein [Propionibacterium acnes HL005PA4] gi|314917189|gb|EFS81020.1| type II secretion system F domain protein [Propionibacterium acnes HL050PA1] gi|314921688|gb|EFS85519.1| type II secretion system F domain protein [Propionibacterium acnes HL050PA3] gi|314930989|gb|EFS94820.1| type II secretion system F domain protein [Propionibacterium acnes HL067PA1] gi|314955080|gb|EFS99486.1| type II secretion system F domain protein [Propionibacterium acnes HL027PA1] gi|314959120|gb|EFT03222.1| type II secretion system F domain protein [Propionibacterium acnes HL002PA1] gi|314961393|gb|EFT05494.1| type II secretion system F domain protein [Propionibacterium acnes HL002PA2] gi|314969714|gb|EFT13812.1| type II secretion system F domain protein [Propionibacterium acnes HL037PA1] gi|314977020|gb|EFT21115.1| type II secretion system F domain protein [Propionibacterium acnes HL045PA1] gi|314989056|gb|EFT33147.1| type II secretion system F domain protein [Propionibacterium acnes HL005PA3] gi|315082691|gb|EFT54667.1| type II secretion system F domain protein [Propionibacterium acnes HL027PA2] gi|315087885|gb|EFT59861.1| type II secretion system F domain protein [Propionibacterium acnes HL072PA1] gi|315099515|gb|EFT71491.1| type II secretion system F domain protein [Propionibacterium acnes HL059PA2] gi|315101978|gb|EFT73954.1| type II secretion system F domain protein [Propionibacterium acnes HL046PA1] gi|315110099|gb|EFT82075.1| type II secretion system F domain protein [Propionibacterium acnes HL030PA2] gi|327331302|gb|EGE73041.1| putative bacterial type II secretion system protein F domain protein [Propionibacterium acnes HL096PA2] gi|327333935|gb|EGE75652.1| putative bacterial type II secretion system protein F domain protein [Propionibacterium acnes HL096PA3] gi|327450235|gb|EGE96889.1| type II secretion system F domain protein [Propionibacterium acnes HL043PA2] gi|327454504|gb|EGF01159.1| type II secretion system F domain protein [Propionibacterium acnes HL087PA3] gi|327456573|gb|EGF03228.1| type II secretion system F domain protein [Propionibacterium acnes HL083PA2] gi|328756268|gb|EGF69884.1| type II secretion system F domain protein [Propionibacterium acnes HL087PA1] gi|328757049|gb|EGF70665.1| type II secretion system F domain protein [Propionibacterium acnes HL025PA2] gi|328761171|gb|EGF74714.1| putative bacterial type II secretion system protein F domain protein [Propionibacterium acnes HL099PA1] Length = 147 Score = 57.4 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 52/140 (37%), Gaps = 4/140 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 P AL ++ ++ AGLP+ AV + P + RR+ + G+ S + + + Sbjct: 7 AQLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVPDSRAWNDLA 66 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK-ASAWI 132 ++ + +S G +SE L+ + L+ K + +A + Sbjct: 67 ---SVEVWRDPAQDVSRAVDSGEGISELLSAHAAQLQVAAAEKTEKKARKAGVDAIGPLV 123 Query: 133 IGSLPFCVSTLVYFTSPGYM 152 LP + V G + Sbjct: 124 CCHLPAFLLVGVVPIIAGMV 143 >gi|314974320|gb|EFT18416.1| type II secretion system F domain protein [Propionibacterium acnes HL053PA1] Length = 288 Score = 57.4 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 61/169 (36%), Gaps = 1/169 (0%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ++ + + + G + AV + ++ + +++ + E+ R Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + E +++ + S L ++ ++ R + +V+A + + S Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I + + + ++ L P G +L+ VA +I ++ M Sbjct: 224 QITLVTIAMFGGLLVIGRSFLAPL-ATPPGQVLVAVAVVMYVIALVQMY 271 >gi|254432709|ref|ZP_05046412.1| pili biogenesis protein [Cyanobium sp. PCC 7001] gi|197627162|gb|EDY39721.1| pili biogenesis protein [Cyanobium sp. PCC 7001] Length = 418 Score = 57.4 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 51/143 (35%), Gaps = 6/143 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + V AG+P+ ++ ++ Q + V + G+S +S+ R + Sbjct: 83 FASKLAALVNAGVPIVRSIDLMASQQKMPLFKRALESVSLELNQGVSFGDSMRRWPK--- 139 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + GG L E+L L+++L ++ +++ A I + Sbjct: 140 --VFDRLTIAMVEAGEAGGVLDESLRRLAKLLEANAKLQNQIKGAMAYPLAVFTIAILVF 197 Query: 138 FCVSTLVYFTSPGYMNVLINDPR 160 ++ + T L + Sbjct: 198 LGMTIFIIPTFAKIFEDLGAELP 220 Score = 40.9 bits (94), Expect = 0.090, Method: Composition-based stats. Identities = 20/159 (12%), Positives = 47/159 (29%), Gaps = 19/159 (11%) Query: 6 KKRTAKFLDDFP------------NALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEF 52 ++R P RAG+P+ A+ V+ +S+ + Sbjct: 262 RRRVDALALKLPLFGELIQKTATAQFSRTFSSLTRAGVPILQALDVVRDITSNSIISDAI 321 Query: 53 RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112 + + G+ LS +I R + + + + G + L+ ++ D Sbjct: 322 QSSRDDLIQGIPLSIAIGR------KNVLPEMAISMLSIGEETGEMDAMLSKVADFYEDE 375 Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 K +E + G + + + + Sbjct: 376 VETAVKALTSLLEPMMIVLVGGIVGAILIAMYLPMFSIF 414 >gi|281412154|ref|YP_003346233.1| Type II secretion system F domain protein [Thermotoga naphthophila RKU-10] gi|281373257|gb|ADA66819.1| Type II secretion system F domain protein [Thermotoga naphthophila RKU-10] Length = 399 Score = 57.4 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 57/183 (31%), Gaps = 22/183 (12%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + AG+ + +A+ ++ Q+ S R + + G SL+E+ + Sbjct: 61 EIATFCRQLSIMISAGIRIKEALNILARQTVFSKRFRKVILEIALSVETGDSLAEAFRKT 120 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + GG L L + K ++ +V++ + Sbjct: 121 G------VFDSVLISMLEAGEEGGVLDRTLKRAADFYESMKRLQDEVKSAMAYPLFVLFF 174 Query: 133 IGSLPFCVSTLV-----------YFTSPGYMNVLINDPR---GHMLLGVAAAFMLIGIMV 178 + +S + SP ++L + V ++ GI V Sbjct: 175 AVVIVLVISFYILPNLVRAFGTSIPLSPTIRSLLKANEFLSENWPWFSVLVVGIIAGIFV 234 Query: 179 MRL 181 + Sbjct: 235 LMK 237 >gi|325518827|gb|EGC98402.1| type II secretion system protein [Burkholderia sp. TJI49] Length = 187 Score = 57.4 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 4/154 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESIS 70 +DFP+ALD++ V AGL + A+ + + V SE ++ G + ++ Sbjct: 33 EDFPDALDLLTVCVEAGLGLDAALMKVSDELHFRSAVVASELALLLLEMRSGFTKETALR 92 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME-AKAS 129 + +++V F T++ + G +++E+L LS +LR R+ M+A+ +A + Sbjct: 93 NLALRTGVEDVESFCTMLIQADRFGTSVAESLRVLSDMLRTRRRMRAEERAAKIALKLLF 152 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 I P + L+ VL+ G + Sbjct: 153 PLIFCVFPALMGVLLGPALIHVYRVLLPTLVGIV 186 >gi|313897907|ref|ZP_07831448.1| type II secretion system protein F domain protein [Clostridium sp. HGF2] gi|312957442|gb|EFR39069.1| type II secretion system protein F domain protein [Clostridium sp. HGF2] Length = 343 Score = 57.4 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 57/163 (34%), Gaps = 10/163 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 ++ + + + GL V + + +I + +P E + + + + Sbjct: 8 SEEMFDFCTQMSMILAGGLSVEEGLEIIGDDTDNPHMKEAAACLLEKVHVIGSFSAALEE 67 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 ++ + ++ G+L + L+ ++K ++ + Sbjct: 68 A-----PYFDTYAKKMVEIGEISGHLDNVMKELALYYERSSDLKQSLKEALTYPS---IL 119 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + + V +V+ P + VL++ G L G AA+ M G Sbjct: 120 LLMMWAVVGIIVWKVLPIFEKVLLH--MGAALQGTAASMMRFG 160 >gi|224370108|ref|YP_002604272.1| GspF2 [Desulfobacterium autotrophicum HRM2] gi|223692825|gb|ACN16108.1| GspF2 [Desulfobacterium autotrophicum HRM2] Length = 409 Score = 57.4 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 6/166 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + + AGLPV ++ ++V S +P + +++ G LSE++ R Sbjct: 75 FTQDLTALLEAGLPVDRSLKILVESSENPKFKLIVKDILKLIEGGSDLSEAMGRYPE--- 131 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 S F + ++GG L L L L + + +++ + + G Sbjct: 132 --VFSKFYVNMVKAGEVGGILEMVLERLGIFLETSQELTDYIKSALVYPLFLLGVGGLSI 189 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + T V + N + + ++ L+ Sbjct: 190 IVLMTFVIPKFAIMFADMGNAIPLSTKMLLVSSDYFRHYWWAMLIA 235 Score = 36.6 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 41/129 (31%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + +G+P+ DA+ ++ S+ + + + G LS S+ Sbjct: 280 RTLGTLSNSGVPILDALLLVRDTVSNKMIADAMNDIFDRVKEGEKLSISLGAAG------ 333 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + + G LS+ L ++ K ME + + F Sbjct: 334 IFPSLAIQMIKVGEETGKLSDMLLRIADNYEKVVKNLVKRVTSLMEPAMILLMGVVVGFI 393 Query: 140 VSTLVYFTS 148 V +++ Sbjct: 394 VVSMLMAIF 402 >gi|222834546|gb|EEE73023.1| predicted protein [Populus trichocarpa] Length = 183 Score = 57.4 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 15/108 (13%), Positives = 36/108 (33%), Gaps = 6/108 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71 D + ++AG+P+ ++ +I ++ + G S++ + R Sbjct: 81 EKDIAYFTRQLSTMLKAGVPLLQSIDIIARGHANPNFTQLLTVIRSDIESGSSMATAFRR 140 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + + + GG L L LS + +K ++ Sbjct: 141 HPQ-----YFDTLYCNLIDAGEQGGILDALLERLSLYMEKSIALKGQI 183 >gi|297622118|ref|YP_003710255.1| putative general secretion pathway protein F [Waddlia chondrophila WSU 86-1044] gi|297377419|gb|ADI39249.1| putative general secretion pathway protein F [Waddlia chondrophila WSU 86-1044] Length = 394 Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 20/168 (11%), Positives = 47/168 (27%), Gaps = 8/168 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRM 72 D + + V AG+P+ +++ + Q + + E G SLS ++ Sbjct: 57 DQLLAFTMQLAQLVGAGVPIYESLIALEEQCRHERYHRILLSLCEQIKAGKSLSAAMEDF 116 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G+L L L+ +L + ++ + + A Sbjct: 117 PAT-----FDKLYYSMIRAGESSGSLDVVLEKLAELLAKQYKLRKDIMTAMIYPGILAGF 171 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L + V G + + + + Sbjct: 172 CLVLIIILLGFVVPMIEGIFQ--GRELNAFTAFVMGLSHAFRAWWWVY 217 >gi|256832096|ref|YP_003160823.1| type II secretion system protein [Jonesia denitrificans DSM 20603] gi|256685627|gb|ACV08520.1| type II secretion system protein [Jonesia denitrificans DSM 20603] Length = 311 Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 65/149 (43%), Gaps = 1/149 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H I++R+ + + +FP +++ +V AG P + A+ + S+ + E V+ Sbjct: 156 LTHTIRRRSERIILEFPTIAELLALAVAAGEPPATALDRVSRTSNGELSHELAIVMNEVR 215 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR-KNMKAKV 119 G L+++++R + L ++ F+ ++V + G L+ L ++ RD +V Sbjct: 216 SGEPLTDALTRFGDRVDLPLITRFAEGVTVAIERGTPLAAVLRAQAQEARDAGHRTLMEV 275 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTS 148 + LP + V+ + Sbjct: 276 GGQREILMMVPVVFIILPISIVFAVFPSF 304 >gi|88604391|ref|YP_504569.1| type II secretion system protein [Methanospirillum hungatei JF-1] gi|88189853|gb|ABD42850.1| type II secretion system protein [Methanospirillum hungatei JF-1] Length = 329 Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/151 (12%), Positives = 54/151 (35%), Gaps = 3/151 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + PN + +G+ + A+ ++ + R++ + + Sbjct: 110 RRISSIEVALPNFFRDLAGMHESGMTLPGAIHLVSQAEYGALTPHIRQLDQRISWNFAFI 169 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++I ++ + +P+ V +++ S GG++ E L + + MK + Sbjct: 170 DAIRQLGKEIPIPLVERSVDLVARASDAGGDIVEVLRAAGKDSAEYVVMKTDRKNNM--- 226 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 II + +V ++ + + Sbjct: 227 FIYVIIILASFAVFLFVVMILVSSFLKTMAD 257 >gi|88704139|ref|ZP_01101854.1| general secretory pathway protein F [Congregibacter litoralis KT71] gi|88701966|gb|EAQ99070.1| general secretory pathway protein F [Congregibacter litoralis KT71] Length = 406 Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 21/158 (13%), Positives = 54/158 (34%), Gaps = 9/158 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRM 72 D + V++ LP++D + Q+ +++ ++ G +L+ +++ Sbjct: 67 ADLALLTRQLATLVQSNLPLADCLQATAEQTRRPRIKAMLLQIRSRVSEGHTLAYAMAEF 126 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G L L L+ R++ +++ + + Sbjct: 127 PLA-----FNEMYRAMVTAGEHAGFLGPVLEQLADYAERRQHSGQQLRMAMIYPF---IL 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 +G + L+ F P + + R L VA Sbjct: 179 LGVAVAVIVALMVFVVPELIGIFSQSNRELPGLTVALI 216 Score = 35.5 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 43/131 (32%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + +G+P+ +A+ + + +R+E V G SLS ++ + P Sbjct: 275 FASTLSILMASGVPLLEALRIAGQVLVNLVLRAESEDVALRVQEGSSLSRALGEAGHFPP 334 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G+L + L + M E ++ G + Sbjct: 335 M------MVHMVASGESSGSLEDMLERSANNQERELEMTLGTVMGLFEPLMVVFMGGMVL 388 Query: 138 FCVSTLVYFTS 148 V ++ Sbjct: 389 LIVLAILLPIF 399 >gi|87310223|ref|ZP_01092354.1| type 4 fimbrial assembly protein pilC [Blastopirellula marina DSM 3645] gi|87286972|gb|EAQ78875.1| type 4 fimbrial assembly protein pilC [Blastopirellula marina DSM 3645] Length = 401 Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 54/135 (40%), Gaps = 6/135 (4%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + +R+G+P+ ++ V+ Q+S+ ++ ++ G SL E++ R + Sbjct: 69 QLSSLIRSGVPLMRSLKVLREQASNVALQEILDDIVSRVEEGASLDEAMRRHPKA----- 123 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 S +T + GG L +AL +++ D++++K + + + + + Sbjct: 124 FSEMATNMVRAGAEGGFLEDALDRVAKFTEDQEDLKGRTMSALAYPVFLGVVGSFVLGFL 183 Query: 141 STLVYFTSPGYMNVL 155 + L Sbjct: 184 LLVFVPQFDELFGRL 198 Score = 33.9 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 9/123 (7%), Positives = 36/123 (29%), Gaps = 5/123 (4%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ++ ++ G+P+ ++ I ++ + ++++ S + Sbjct: 264 LSLAVARFCRVLGTMLKNGVPIIRSLE-ISRDAAGNLILAKAIEDASENISAGESLASPL 322 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + ++ +L L ++ L R + + + +E Sbjct: 323 SASG----YFPRNVVEMISVAEESNSLDTVLVEIADGLEKRTSRRLDLTVRLLEPMMLLV 378 Query: 132 IIG 134 + Sbjct: 379 MAS 381 >gi|24371768|ref|NP_715810.1| general secretion pathway protein F [Shewanella oneidensis MR-1] gi|24345558|gb|AAN53255.1|AE015466_15 general secretion pathway protein F [Shewanella oneidensis MR-1] Length = 407 Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 54/164 (32%), Gaps = 6/164 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 + I V AGLP+ +++ + Q D + S V G SL++S++ Sbjct: 67 AELALITRQIATLVAAGLPIEESLKAVGQQCEKDRLASMIMAVRSRVVEGYSLADSLAEF 126 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G+L L L+ R+ +K+K+Q + + Sbjct: 127 P-----HIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKLQQAMIYPIMLTLV 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + + V G + + +AA+ + Sbjct: 182 AIGVVSVLLAAVVPKVVGQFEHMGAELPATTRFLIAASDFVQNY 225 >gi|317050390|ref|YP_004111506.1| type II secretion system F domain-containing protein [Desulfurispirillum indicum S5] gi|316945474|gb|ADU64950.1| Type II secretion system F domain protein [Desulfurispirillum indicum S5] Length = 419 Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 53/164 (32%), Gaps = 9/164 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D+ + ++AG+P+ + + S ++ R V G+SLS S+ Sbjct: 79 DELLMFCRQMYALIKAGVPLMRTLHGLADASHSKAMQKVLRDVAHQLESGMSLSASMQVH 138 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R P + + G L A ++ L KN K +++ + I Sbjct: 139 SRVFPP-----IVINMVHIGENTGQLDNAFLQVAAYLEMDKNNKKRIKQATRYPT---VI 190 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 I ++ ++ + P + V L M Sbjct: 191 ISAMVLAITVINIMVIPAFTQVFARMGSDLPLATRFLIGMSNAF 234 Score = 35.9 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 15/133 (11%), Positives = 42/133 (31%), Gaps = 7/133 (5%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74 + + AG+P A++ + + + ++ ++ G SLS S + R Sbjct: 284 LSRFCRTLAMMLSAGVPALQALSAVSRSVGNLYIAQSIDQMRQSIEGGESLSRSAAATKR 343 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + P+ + + G+ L + + K + ++E ++ Sbjct: 344 FTPM------VLQMMAVGEETGSTDTMLLETAEFYDQAIDYDLKRLSDALEPILLVFMGA 397 Query: 135 SLPFCVSTLVYFT 147 + + Sbjct: 398 LVLLLALGIFMPM 410 >gi|167044732|gb|ABZ09402.1| putative bacterial type II secretion system protein F domain protein [uncultured marine microorganism HF4000_APKG7N23] Length = 255 Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 52/141 (36%), Gaps = 1/141 (0%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K +R + D +P+ L + +RAG+ V A+ I + +D + R + Sbjct: 39 KKRKLERIKELEDTWPDVLADLSEELRAGMGVESALDSIANRRNDRMGLMLRDAVSDMRD 98 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 ++ +S ++++V G+++ L N+S + ++ + A Sbjct: 99 N-GFGIAMKNFAAKSESAMISRIVSILNVALASSGSIATTLENISEEFWEIYMLRKERIA 157 Query: 122 LSMEAKASAWIIGSLPFCVST 142 + GS+ + Sbjct: 158 KTQGTANFILWGGSILCPLML 178 >gi|325964626|ref|YP_004242532.1| hypothetical protein Asphe3_32910 [Arthrobacter phenanthrenivorans Sphe3] gi|323470713|gb|ADX74398.1| hypothetical protein Asphe3_32910 [Arthrobacter phenanthrenivorans Sphe3] Length = 265 Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 24/180 (13%), Positives = 51/180 (28%), Gaps = 16/180 (8%) Query: 19 ALDIIVRSVRAGLPVSDAVAVI----------VGQSSDPVRSEFRRVIETQHLGLSLSES 68 + + ++ G + I S + G +SE+ Sbjct: 76 VVQQLAALLKGGRTPARLWDEICAVYGSPVSGARTVSAGSGTVLASARAAAAAGTPVSEA 135 Query: 69 ISRM------VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + R R + + + + G L++ L + L + A Q Sbjct: 136 MRRALPSAFPRRDRECRIWAELAACFDIAEASGCPLADVLTRFAAQLEVEDDADAARQTA 195 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 KA+ ++ LP L +++L+ P G L + G + + Sbjct: 196 LAGPKATVSLLTWLPLMGLGLGIALGVDPLSILLGTPWGLAALAAGFGLTVAGRLWSARL 255 >gi|242238116|ref|YP_002986297.1| type IV pilin biogenesis protein [Dickeya dadantii Ech703] gi|242130173|gb|ACS84475.1| type II secretion system protein [Dickeya dadantii Ech703] Length = 400 Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 48/156 (30%), Gaps = 6/156 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVR 74 L I ++AGLP+ DA+A+I R + G + S++I Sbjct: 61 LAVILRQIASLLQAGLPLPDALALIGEHHEKAGWRCLLSDIRHQILQGRAFSDAIGDYPD 120 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 P + +L G L E A L+ ++ + + V Sbjct: 121 IFP-----AICGSLLAVGELTGKLDECCARLAVYQETQQQLASNVMKAIRYPVFVIVAGM 175 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + ++ LV G L ++ + Sbjct: 176 LVGLLMTALVLPEFAGLYATFNAPLPWFTRLMLSFS 211 >gi|331649125|ref|ZP_08350211.1| general secretion pathway protein F [Escherichia coli M605] gi|331041623|gb|EGI13767.1| general secretion pathway protein F [Escherichia coli M605] Length = 398 Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 27/198 (13%), Positives = 60/198 (30%), Gaps = 29/198 (14%) Query: 5 IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62 +K R + + + A LP+ +++AVI QSS+ + +V G Sbjct: 49 VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLADVLNQVRSAILEG 108 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS+++ + + G L+ L L+ +R+ +++K+ Sbjct: 109 HPLSDALQHFPTL-----FDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQS 163 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP-------------------RGHM 163 + + V L+ P ++ G Sbjct: 164 LIYP---CMLTTVAIVVVIILLTAVVPKITKQFVHMKQQLPLSTRILLGLSDTLQRTGPT 220 Query: 164 LLGVAAAFMLIGIMVMRL 181 LL + + ++ Sbjct: 221 LLATVFIVAVGFWLWLKR 238 >gi|331671621|ref|ZP_08372419.1| protein transport protein HofC [Escherichia coli TA280] gi|331071466|gb|EGI42823.1| protein transport protein HofC [Escherichia coli TA280] Length = 400 Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 21/154 (13%), Positives = 52/154 (33%), Gaps = 9/154 (5%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ + ++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLVLLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWPEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ I+ Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLADKVKSALRYPI---IILAM 172 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 V +++F P + + +L Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPVLTQGI 206 >gi|293189314|ref|ZP_06608037.1| type II secretion system protein [Actinomyces odontolyticus F0309] gi|292821777|gb|EFF80713.1| type II secretion system protein [Actinomyces odontolyticus F0309] Length = 298 Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 52/147 (35%), Gaps = 1/147 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + R P+ +++ +V AG + A+ + G + P+ +E Sbjct: 143 LTMRANARQRAIDASVPDCSELLALAVAAGESIPAAIERVAGCAGGPLGAELSLTAGHIR 202 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +++ +V ++ S ++ + G L+ L + +R R+R + Sbjct: 203 NGTPSVRALADLVERTESPALTRLSRTLTTAIERGSPLASVLHDQARDQRERSLAALMEE 262 Query: 121 ALSME-AKASAWIIGSLPFCVSTLVYF 146 E A + LP V +Y Sbjct: 263 GGRREIAMLLPVVFLILPVTVMFALYP 289 >gi|154507636|ref|ZP_02043278.1| hypothetical protein ACTODO_00117 [Actinomyces odontolyticus ATCC 17982] gi|153797270|gb|EDN79690.1| hypothetical protein ACTODO_00117 [Actinomyces odontolyticus ATCC 17982] Length = 298 Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 51/147 (34%), Gaps = 1/147 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + R P+ +++ +V AG + A+ + G + P+ E Sbjct: 143 LTMRANARQRAIDASVPDCSELLALAVAAGESIPAAIERVAGCAGGPLGVELSLTAGHIR 202 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +++ +V ++ S ++ + G L+ L + +R R+R + Sbjct: 203 NGTPSVRALADLVERTESPALTRLSRTLTTAIERGSPLASVLHDQARDQRERSLAALMEE 262 Query: 121 ALSME-AKASAWIIGSLPFCVSTLVYF 146 E A + LP V +Y Sbjct: 263 GGRREIAMLLPVVFLILPVTVMFALYP 289 >gi|50841725|ref|YP_054952.1| hypothetical protein PPA0232 [Propionibacterium acnes KPA171202] gi|50839327|gb|AAT81994.1| hypothetical protein PPA0232 [Propionibacterium acnes KPA171202] Length = 236 Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 5/148 (3%) Query: 7 KRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +R + P AL ++ ++ AGLP+ AV + P + RR+ + G+ Sbjct: 88 RRMEQHRAAQLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVPD 147 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S + + + ++ + +S G +SE L+ + L+ K + +A Sbjct: 148 SRAWNDLA---SVEVWRDPAQDVSRAVDSGEGISELLSAHAAQLQVAAAEKTEKKARKAG 204 Query: 126 AK-ASAWIIGSLPFCVSTLVYFTSPGYM 152 + LP + V G + Sbjct: 205 VDAIGPLVCCHLPAFLLVGVVPIIAGMV 232 >gi|149911343|ref|ZP_01899963.1| general secretion pathway protein F [Moritella sp. PE36] gi|149805583|gb|EDM65586.1| general secretion pathway protein F [Moritella sp. PE36] Length = 406 Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 21/162 (12%), Positives = 53/162 (32%), Gaps = 6/162 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 D + + A LP+ +++ + QS +++ V G +L+ES + Sbjct: 65 TADMALLTRQLSTLIAASLPLEESLKAVAEQSEQPRIQNMILAVRSRVVEGHTLAESFAE 124 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + G+L + L L+ R+ M +++ + Sbjct: 125 FP-----HAFDDLYCSMVASGEKSGHLDKVLNRLADYTEQRQKMASQLTQAMIYPVMLTL 179 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + + + T V G + + + +A + + Sbjct: 180 VAIGVVSLLLTSVVPKVVGQFQHMGQELPQITQILIALSDFV 221 >gi|114049093|ref|YP_739643.1| type II secretion system protein [Shewanella sp. MR-7] gi|113890535|gb|ABI44586.1| type II secretion system protein [Shewanella sp. MR-7] Length = 421 Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 18/172 (10%), Positives = 52/172 (30%), Gaps = 8/172 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMV 73 D I + AG+P+ + ++ E ++ G+ LS+S+ Sbjct: 82 DIAMVTRQIATMLAAGVPLVTTIEMLGRGHEKQKMRELLGTILSEVQSGIPLSDSLR--- 138 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G+L ++ + +K+K++ A + Sbjct: 139 --PHRRYFDDLYVDLVAAGEHSGSLDAVFDRIATYREKAEALKSKIKKAMFYPAAVVVVA 196 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183 + + V + +++G++ + + +I Sbjct: 197 ILVTTLLLLFVVPQFEDIFKSFGAELPAFTQLIIGISRFLQSSWYIFLAAII 248 >gi|284989775|ref|YP_003408329.1| Type II secretion system F domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284063020|gb|ADB73958.1| Type II secretion system F domain protein [Geodermatophilus obscurus DSM 43160] Length = 313 Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 66/155 (42%), Gaps = 2/155 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +++R L +FP +++ +V AG + A+A + S + E + Sbjct: 157 LTQQVQRREELLLTEFPVVAELLALAVTAGESPTAAIARVTRLSGGELARELGAALGRAR 216 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ L++++ ++ L ++ F + V + G L+E L + +R+ K ++ Sbjct: 217 AGVPLADALQQVADRTSLDPLARFVDGLLVALERGTPLAEVLRAQAADVRE--AGKRRLL 274 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + T+++ PG ++++ Sbjct: 275 EAGGRKEIAMMVPVVFLVLPVTVLFALYPGLISIV 309 >gi|154148351|ref|YP_001406609.1| type II secretion system protein [Campylobacter hominis ATCC BAA-381] gi|153804360|gb|ABS51367.1| type II secretion system protein [Campylobacter hominis ATCC BAA-381] Length = 413 Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 21/159 (13%), Positives = 60/159 (37%), Gaps = 9/159 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 + ++ + AG+ + D++ + + D ++ F + + + GLS++E+ + Sbjct: 71 TQNLVASIRQLAVMTNAGISIHDSIKEVANSTEDKALKEIFASINDDLNSGLSMTEASEK 130 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + GN++E+L+ L+++L + + K + Sbjct: 131 FRSKLG-----DVVIAMISLGESTGNMAESLSKLAQMLNEVWENQRKFKKAMRYPM---V 182 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 I+ +L + L+ + P + + L Sbjct: 183 IMTALAIAFTVLMMYVVPKFREIFEELGADLPLPTRILL 221 >gi|83646646|ref|YP_435081.1| general secretion pathway protein F [Hahella chejuensis KCTC 2396] gi|83634689|gb|ABC30656.1| general secretion pathway protein F [Hahella chejuensis KCTC 2396] Length = 408 Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 9/161 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D I +++G+PV + ++ + QS VRS V G SL++S+S Sbjct: 69 ADLALLTRQIATLIQSGIPVEETLSAVASQSEKAKVRSMMLAVRAKVLEGYSLADSLSEF 128 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P + G+L L L+ R+ + K+Q ++ ++ Sbjct: 129 PSAFP-----ELYRSTVAAGEHAGHLDLVLNRLADYTEQRQMSRQKIQLAAIYPIILTFV 183 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + V L+ + P + V ++ + L + Sbjct: 184 AFGI---VGFLLGYVVPDIIKVFVSKGQALPALTQVILALS 221 Score = 40.1 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 12/129 (9%), Positives = 29/129 (22%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + +G+P+ DA+ + S+ + Sbjct: 277 FASTLSILNSSGVPLVDAMRIAGEVLSNQWLKLRVAEAAQKVREGGSLYKCLE-----QT 331 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L E L + + + E + G + Sbjct: 332 GYFPPMMIHMIASGEASGELGEMLERTASSQENDLQSRIATMVGLFEPLMLLVMGGVVLI 391 Query: 139 CVSTLVYFT 147 V ++ Sbjct: 392 IVMAIMLPI 400 >gi|290559840|gb|EFD93163.1| type II secretion system protein [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 298 Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 71/173 (41%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K KRT + A+ I+ V +G+P+ +A+ + + + EF+ +E Sbjct: 112 KLQAVKRTKLIEEQVVFAIREIMIKVGSGVPIFNALLDVANGNYGIISDEFKLAVEEIES 171 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ ++++ + R +P Q + +I + G +++ L ++ +L ++ K A Sbjct: 172 GVPQNDALDHLARRVPSQSLRRAIDIILNAIKSGSDIAGTLELINDMLIKKQQSDMKSYA 231 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + + A+++ S+ + F G + +++ F + Sbjct: 232 GELTPMSMAYMLISVVVPSLGMSVFVILGSLAHFNTKAIIYIIPPFLLIFQIF 284 >gi|289759812|ref|ZP_06519190.1| predicted protein [Mycobacterium tuberculosis T85] gi|289715376|gb|EFD79388.1| predicted protein [Mycobacterium tuberculosis T85] Length = 241 Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 60/161 (37%), Gaps = 1/161 (0%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 AL+++V +RAG A ++ ++ PV R V LG ++ + Sbjct: 81 QALEAALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAA 140 Query: 74 RYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R L + + S G ++ + R + +R+ A+V A A+ASA I Sbjct: 141 RSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAI 200 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + LP L ++ L+ G LL V Sbjct: 201 LAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLES 241 >gi|166033071|ref|ZP_02235900.1| hypothetical protein DORFOR_02793 [Dorea formicigenerans ATCC 27755] gi|166027428|gb|EDR46185.1| hypothetical protein DORFOR_02793 [Dorea formicigenerans ATCC 27755] Length = 397 Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 48/153 (31%), Gaps = 9/153 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV--------GQSSDPVRSEFRRVI 56 + R + D+P + + + AG+ V A IV Q V E + Sbjct: 240 KQARQKQMCLDYPEVISKLTLLLGAGMTVRKAWIKIVNDYDSRIKQQGKRAVYEEMKYTC 299 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANL-SRILRDRKNM 115 G+ +E + R QE F ++S + G L L + + + Sbjct: 300 RQMDGGVPEAECYEKFGRRCGTQEYMRFGALLSQNLRKGTKGLNDLLRLEAIQSFEERKA 359 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 +A+ K + L + +V Sbjct: 360 RARRLGEEAGTKLLLPMFLMLAEVLVIVVVPAF 392 >gi|170732851|ref|YP_001764798.1| type II secretion system protein [Burkholderia cenocepacia MC0-3] gi|169816093|gb|ACA90676.1| type II secretion system protein [Burkholderia cenocepacia MC0-3] Length = 332 Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 57/158 (36%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 ++ R + P +D++ GL + ++ V+ + E Sbjct: 169 VRRRATARRQSLGAELPLLVDMLRLLQGVGLSLDQSIQVVTHDFQTMLPVLSWELGVAQR 228 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+ R+ +++ ++ + GG + E L LR+ + Sbjct: 229 QFAAGRTREQSLQRLTNSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREGRRATL 288 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + Q + K + +I +L + L+ PG M VL Sbjct: 289 REQIGRLTVKMTGVMIVTLLPAL--LIVTAGPGIMTVL 324 >gi|294791162|ref|ZP_06756319.1| conserved hypothetical protein [Scardovia inopinata F0304] gi|294457633|gb|EFG25987.1| conserved hypothetical protein [Scardovia inopinata F0304] Length = 234 Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 61/186 (32%), Gaps = 10/186 (5%) Query: 1 MKHLIKKRTA---KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57 ++ K R ++ + + +V +R G + A + E Sbjct: 47 IRLRGKVRIRGADLLEENMSDIIAELVSLIRNGSSLISACEEVG--GCGFAVPEITEARL 104 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 Q L S + R S + + LG + L + + + ++ Sbjct: 105 RQMLLQRSSSHPKEVKRISQQ-----LSAACHLSTALGCGAASCLEAVEAEHKRNQGIED 159 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + ++ + + ++ LP + S VL P G + L +AA G+M Sbjct: 160 RRRSALAVPRMTLRVLLVLPILILLAGQMASSHTFTVLFTKPVGWICLLIAALLYGAGLM 219 Query: 178 VMRLMI 183 +R +I Sbjct: 220 WIRSLI 225 >gi|197117666|ref|YP_002138093.1| type II secretion system protein PulF [Geobacter bemidjiensis Bem] gi|197087026|gb|ACH38297.1| type II secretion system protein PulF [Geobacter bemidjiensis Bem] Length = 401 Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 52/163 (31%), Gaps = 8/163 (4%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + ++ ++AGLP+ A+ I+ + + E G++LS Sbjct: 57 RKKIGNKELLLFNQELLVLLKAGLPILQALDTILESGGGKLNEILSAIREDVKGGMALSA 116 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + + R P + G+L + + L+ + + KV + Sbjct: 117 AFEKFPRVFPH-----LYIASVRAGERTGDLPQTIRRYIAFLKRTEGFRGKVIGALIYPA 171 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 ++ VS L+ + P + + + L Sbjct: 172 ---ILVTVAAVAVSLLLIYVVPTFSTIYADSGAALPLPTQMLI 211 Score = 43.2 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 46/135 (34%), Gaps = 7/135 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI-ETQHLGLSLSESISRMV 73 + + +G+P+ +A+ + VG ++ V + G LS ++ M Sbjct: 266 ALAGFTRTLATVLGSGIPIVEAMRMSVGTLNNKVLERGLLLAVHRVEEGSKLSTALEGMK 325 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 P + + + G+L E L+++S + V S+E + Sbjct: 326 LMPP------LALRMLTVGETTGSLEEMLSDISDYFEEEIERDLHVLTTSIEPAIMVAMG 379 Query: 134 GSLPFCVSTLVYFTS 148 + + T+ Sbjct: 380 VVIGVIIVTMYLPIF 394 >gi|241763429|ref|ZP_04761483.1| type II secretion system protein [Acidovorax delafieldii 2AN] gi|241367371|gb|EER61692.1| type II secretion system protein [Acidovorax delafieldii 2AN] Length = 416 Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 23/173 (13%), Positives = 57/173 (32%), Gaps = 9/173 (5%) Query: 17 PNALDI---IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 P+ L I + +RAGL + +A+ V++ V + + +++ G LS ++S Sbjct: 77 PDVLAITSELAIMLRAGLALDNALRVLIDMSHKPSVAALMQGILDAVKGGTPLSRALSHH 136 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 F + + G +S L L + ++ ++ V + ++ + Sbjct: 137 RELFGD-----FYINMVRSGEASGQMSAVLDRLVEHMERQRALRDSVISATIYPAILLAV 191 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + V + + L + ++ M+ Sbjct: 192 AVLSLIAMLGFVVPQFEKLFTDMGDALPLPTRLVMGLGHAFTSYGLLMGMVAL 244 >gi|119773312|ref|YP_926052.1| general secretion pathway protein F [Shewanella amazonensis SB2B] gi|119765812|gb|ABL98382.1| general secretion pathway protein F [Shewanella amazonensis SB2B] Length = 407 Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 8/169 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 + I V +GLPV +A+ + Q D + S V G SL++S++ Sbjct: 67 AELALITRQIATLVASGLPVEEALKAVGQQCEKDRLASMVMAVRSRVVEGYSLADSMAEF 126 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G+L L L+ R+ +K+K+ + + Sbjct: 127 P-----HIFDDLYRSMVASGEKSGHLEVVLNRLADYTERRQQLKSKLTQAMIYPVMLTLV 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVM 179 + + V L + L+ +A G+++M Sbjct: 182 AIGVVAVLLAAVVPKVVSQFEHLGQELPATTKALMASSAFVQDYGLLIM 230 >gi|314977796|gb|EFT21890.1| type II secretion system F domain protein [Propionibacterium acnes HL045PA1] Length = 288 Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 61/169 (36%), Gaps = 1/169 (0%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ++ + + + G + AV + ++ + +++ + E+ R Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + E +++ + S L ++ ++ R + +V+A + + S Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I + + + ++ L P G +L+ VA +I ++ M Sbjct: 224 QITLVTIAMFGGLLVIGRSFLAPL-ATPPGQVLVAVAVVMYVIALVQMY 271 >gi|91772318|ref|YP_565010.1| type II secretion system protein [Methanococcoides burtonii DSM 6242] gi|91711333|gb|ABE51260.1| type II secretion system protein F domain [Methanococcoides burtonii DSM 6242] Length = 306 Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 20/179 (11%), Positives = 50/179 (27%), Gaps = 4/179 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHL 61 + R K P A++ + AG+ D + + + E + ++ + Sbjct: 121 MVAGDRKRKIEQMLPYAINYMSAMSGAGVLPVDLFRALSNNEIYGEMCVESKYLVRDLEV 180 Query: 62 GLS-LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 S L ++ + P + F GG L + K K Sbjct: 181 LGSNLVSAMKNLASSTPSPMLQEFLQGAITVVTSGGELESYFKIKAEQYIIDNRQKQKEF 240 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ ++ + + ++ M D +L + + ++ Sbjct: 241 LETLGLLGETYVTAFVAGPLFLIITIAIVSLMG--GADQVFLYILVYGLIPVGSAMFLV 297 >gi|37527504|ref|NP_930848.1| type IV pilin biogenesis protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786939|emb|CAE16013.1| Protein transport protein HofC [Photorhabdus luminescens subsp. laumondii TTO1] Length = 399 Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 16/162 (9%), Positives = 52/162 (32%), Gaps = 10/162 (6%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 N + + + +G+P+ + + +++ + + + + G S S S+ Sbjct: 63 NFIRQLATLLSSGMPLLNCLNILIRECAHPLWHCVLLDISKKITRGESFSSSLKNYPFLF 122 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 P + +L G L L + + ++ K+ + + Sbjct: 123 PP-----LFCQLISVGELTGQLEVCCQLLVKQQEQQDKLQKKITKALRYPLIITIVASII 177 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + ++ F P + + + + L + + ++ Sbjct: 178 ---ILLMLIFVLPEF-EHIYHSFDAQLPLLTRSLLITSNWLI 215 >gi|120597346|ref|YP_961920.1| type II secretion system protein [Shewanella sp. W3-18-1] gi|146294509|ref|YP_001184933.1| type II secretion system protein [Shewanella putrefaciens CN-32] gi|120557439|gb|ABM23366.1| type II secretion system protein [Shewanella sp. W3-18-1] gi|145566199|gb|ABP77134.1| type II secretion system protein [Shewanella putrefaciens CN-32] gi|319427874|gb|ADV55948.1| type IV pilus inner membrane protein, PilC [Shewanella putrefaciens 200] Length = 421 Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 18/180 (10%), Positives = 51/180 (28%), Gaps = 18/180 (10%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D A I + AG+P+ + ++ +R ++ G+ LS+++ Sbjct: 82 DIAMATRQIATMLAAGVPLVTTIEILGRGHEKLKMRDLLGTILSEIQSGIPLSDALR--- 138 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G+L ++ + +K+K++ A + Sbjct: 139 --PHRRYFDDLYVDLVAAGEHSGSLDAVFDRIATYREKAEQLKSKIKKAMFYPAAVVVVA 196 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA------------AFMLIGIMVMRL 181 + + V + + + + +GI + Sbjct: 197 ILVTTLLLLFVVPQFEDIFKGFGAELPAFTQMIIGISRWLQSSWYLFFIAITVGIWLFVR 256 >gi|197121135|ref|YP_002133086.1| general secretion pathway protein F [Anaeromyxobacter sp. K] gi|220915836|ref|YP_002491140.1| general secretion pathway protein F [Anaeromyxobacter dehalogenans 2CP-1] gi|196170984|gb|ACG71957.1| general secretion pathway protein F [Anaeromyxobacter sp. K] gi|219953690|gb|ACL64074.1| general secretion pathway protein F [Anaeromyxobacter dehalogenans 2CP-1] Length = 409 Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 51/140 (36%), Gaps = 6/140 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 + A + V AG+P+ +A+ +V Q + ++ V + + G +L+++++ Sbjct: 70 NLAIATRQLSVLVGAGIPLVEALTALVDQVEHERLKRVLGDVKQRVNEGAALADALAAHP 129 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R S + + G L L L+ + +++K+ A I Sbjct: 130 R-----VFSTLYVNMIRAGEHSGALEVVLVRLADFTESQARLRSKIMGTMAYPAAMMVIG 184 Query: 134 GSLPFCVSTLVYFTSPGYMN 153 + + T+V Sbjct: 185 SVILGVLFTVVIPKITKIFE 204 Score = 37.4 bits (85), Expect = 0.81, Method: Composition-based stats. Identities = 14/133 (10%), Positives = 39/133 (29%), Gaps = 5/133 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + +R+G+P+ A+ ++ + ++ + + Sbjct: 273 AISRFARTLSTLLRSGVPLLTAMEIVKNIVGNTRLADVIDQARDAIREGESIAAPLK--- 329 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 E + + G L E L N+++ D+ +E + Sbjct: 330 --RSGEFPPLVYHMVAIGERSGALEEMLGNVAKAYEDQVETTVSALTSLLEPLMIVAMGV 387 Query: 135 SLPFCVSTLVYFT 147 + F V +++ Sbjct: 388 VVAFIVFSVLLPI 400 >gi|330866887|gb|EGH01596.1| general secretion pathway protein GspF [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 332 Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + AG P+ ++ +++ Q ++ R+ E G LS ++ Sbjct: 62 AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEE 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 S + + GG L L LS L + ++ +V + ++ Sbjct: 122 GTQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + ++ L+ + P ++ + + G + + + +G + Sbjct: 174 VIGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGQFL 217 >gi|322418665|ref|YP_004197888.1| Type II secretion system F domain-containing protein [Geobacter sp. M18] gi|320125052|gb|ADW12612.1| Type II secretion system F domain protein [Geobacter sp. M18] Length = 401 Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 23/169 (13%), Positives = 53/169 (31%), Gaps = 8/169 (4%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + ++ ++AGLP+ A+ I+ + + + E G++LS Sbjct: 57 RKKIGSKELLLFNQELLVLLKAGLPIIQALDTILESGTGKLNEILSAIREDIKGGMALSA 116 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + + R P + G+L + + L+ + + K+ A Sbjct: 117 AFEKYPRVFPQ-----LYIASIRAGERTGDLPQTIRRYIAFLKRTEGFRGKIIAALFYPA 171 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 +I +S L+ + P + + L + Sbjct: 172 ---ILITVATLAISMLLIYVVPTFSQIYAGSGSALPLPTQMLINFTGAL 217 Score = 35.9 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 40/122 (32%), Gaps = 7/122 (5%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI-ETQHLGLSLSESI 69 + + +G+P+ +A+ + VG ++ V + G LS ++ Sbjct: 262 AIRYSLAGFTRTLATVLGSGIPIVEAMRMSVGTLNNKVLERGLLMAVHRVEEGSKLSTAL 321 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 M P + + + G L E L ++S D V + ++E Sbjct: 322 ENMKLLPP------LALRMLSVGETTGALEEMLGDISDYFEDEIEKNLHVLSTAIEPAIM 375 Query: 130 AW 131 Sbjct: 376 VV 377 >gi|85986487|emb|CAF22035.1| putative pilus assembly protein PilC [Legionella longbeachae] Length = 406 Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 21/186 (11%), Positives = 57/186 (30%), Gaps = 14/186 (7%) Query: 1 MKHLIKKR--------TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSE 51 + ++KKR D + + +G+P+ + ++ Q++ ++ Sbjct: 46 ISKIVKKRSPILKRNSKKVKSSDITVFSRQLATMIESGIPLVQSFDIVAKGQTNTRLKEL 105 Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111 ++ GL+LSE++ + + + + + G+L L ++ Sbjct: 106 IEQIKHDVETGLTLSEALKKHPSH-----FNDLFCNLVDAGEKSGSLDIMLNKIATYKEK 160 Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 + +K K++ A + + + V D V + Sbjct: 161 IETIKKKIKKALTYPMAVIVVALIVTAGLLIFVVPQFEALFKGFGADLPMMTKTVVELSK 220 Query: 172 MLIGIM 177 Sbjct: 221 FFQSYW 226 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 13/136 (9%), Positives = 43/136 (31%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72 + + AGLP+ +A+ + G + + + S ++ + G +++++ Sbjct: 271 AAIARFARTLSITFAAGLPLVEALKSVAGATGNIIFSNATNKIRDEVSTGQQMNKAMEN- 329 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 Q + + L L+ ++ + + + +E + Sbjct: 330 -----TQLFPNMVIQMVAIGEESCALERMLSKVADFYEEDVDNAVDSLSSLLEPIIMTIL 384 Query: 133 IGSLPFCVSTLVYFTS 148 + V ++ Sbjct: 385 GVLVGGLVVSMYLPIF 400 >gi|331082850|ref|ZP_08331972.1| hypothetical protein HMPREF0992_00896 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400179|gb|EGG79828.1| hypothetical protein HMPREF0992_00896 [Lachnospiraceae bacterium 6_1_63FAA] Length = 389 Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 14/158 (8%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG----------QSSDPVRSEFRRVIET 58 + D+P+ + +V +RAG + A+ I + E R + Sbjct: 235 RKEMQRDYPDIIQKLVLFLRAGFTIRKAMEKIADGYLRSREKYHEKERSAYEEIVRTCKE 294 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKA 117 G+ +E+ R + + S ++ + NL E L + D + A Sbjct: 295 MQSGIYEAEAYERFGTRCGISQYKILSVLLVQNLKKGNQNLLELLEREEAVAEDERKRSA 354 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 KV+ K ++ L + L+ P + + L Sbjct: 355 KVRGEEASTKLLLPMVLQLIVVLMILMI---PAFFSFL 389 >gi|167586040|ref|ZP_02378428.1| type II secretion system protein [Burkholderia ubonensis Bu] Length = 336 Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 43/138 (31%), Gaps = 6/138 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + ++AGLP++ A+ ++ + D + + G + +++R Sbjct: 2 FTQQLASLLQAGLPLAPALEMLARTRGPDGMPRIAAGLAREIGGGRRFAAALARYPTQFG 61 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G L LA ++ + K++A A ++ Sbjct: 62 -----SLYRQLIEIGETSGALGPVLARVADHRERADAQRRKLRAALAYPVAVILFALAIT 116 Query: 138 FCVSTLVYFTSPGYMNVL 155 + V T + Sbjct: 117 IALMLWVVPTFRQIFDGF 134 Score = 35.1 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 40/130 (30%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P++DA A + + R+ G L++++ + Sbjct: 206 WCRSLATLLGAGVPLADAFATLERTAGHPVFEQATARIAARVLRGARLADAMHAAGCFPD 265 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ G L LA+++ + + + A E + + Sbjct: 266 DVVQP------IAVAEETGALDTMLADIAALCERQLDAHLDALAALGEPLIVIVLGALVG 319 Query: 138 FCVSTLVYFT 147 V + Sbjct: 320 SLVVAMYLPI 329 >gi|253576286|ref|ZP_04853617.1| type II secretion system protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251844413|gb|EES72430.1| type II secretion system protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 291 Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 69/157 (43%), Gaps = 8/157 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV----GQSSDPVRSEFRRVI 56 + +++R L + P L+ IV V AG V A+ + + Q P+ E ++ Sbjct: 134 LHRKVQRREQAVLLELPELLNKIVLLVGAGSTVQQAMKLCLERKREQIGHPLYRELLQMQ 193 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTV-ISVQSQLGGNLSEALANLSRILRDRKNM 115 + G S +++ + +QEVS F+T + + G + + AL +LS L +++ Sbjct: 194 KEWEGGDSFQQAMEGFSKRCGIQEVSAFTTAVLLNYRRGGEDFALALRDLSHSLWEKRKA 253 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 + E +S + + ++ L+ +P +M Sbjct: 254 VGR---TLGEQASSKLVFPMVLLFMAVLILVGAPAFM 287 >gi|307825437|ref|ZP_07655656.1| Type II secretion system F domain protein [Methylobacter tundripaludum SV96] gi|307733612|gb|EFO04470.1| Type II secretion system F domain protein [Methylobacter tundripaludum SV96] Length = 404 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 61/175 (34%), Gaps = 7/175 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHLGLS 64 K+T D + + +GLP+ ++ V++ + ++ V RV+E G + Sbjct: 57 KQTKLSQKDIALFTGELATLLESGLPLDKSLLVLIDLTEDNERVTKLIGRVLEKVKGGAT 116 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L++++ + S F + + GG+L E L LS L + +K V + Sbjct: 117 LADALEKQS-----GIFSKFYLNMIRAGEAGGSLGEVLGRLSEYLERSRELKETVSTALI 171 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + F + T V + V A L M Sbjct: 172 YPAILLIMSLASLFVMLTFVVPQFSEMFESAGKALPVSTQIVVGLAEWLQSYWWM 226 Score = 34.7 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 12/137 (8%), Positives = 44/137 (32%), Gaps = 7/137 (5%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESIS 70 + N + + G+ + A+ ++ + + + + E G ++S+++ Sbjct: 266 LNKETANISRTLGTLLGNGVSILAALVIVRETVDNLVLAAAIQDTEEQLKQGRNMSDALL 325 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + + G L E L ++ I + + + +E Sbjct: 326 E------KGIFPKMAMQMIKMGEETGRLEEMLLRVATIYDKQLRVAIQRMLALLEPALII 379 Query: 131 WIIGSLPFCVSTLVYFT 147 + + + +++ Sbjct: 380 SLGLMIAGIIVSILLAI 396 >gi|257485376|ref|ZP_05639417.1| general secretion pathway protein GspF [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 240 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + AG P+ ++ +++ Q R+ R+ E G LS ++ Sbjct: 62 AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGKPLSVALEEE 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 S + + GG L L LS L + ++ +V + ++ Sbjct: 122 GTQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + ++ L+ + P ++ + + G + + + +G + Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGQFL 217 >gi|163840097|ref|YP_001624502.1| tyrosine phenol-lyase [Renibacterium salmoninarum ATCC 33209] gi|162953573|gb|ABY23088.1| tyrosine phenol-lyase [Renibacterium salmoninarum ATCC 33209] Length = 161 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 49/100 (49%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 I +R A+ L +FP+ +++ +VRAG + A+ + S + EF R++ G Sbjct: 1 MKITRREARMLAEFPSLAELMALAVRAGESATGALERVCRTSQGDLAQEFARILGQTRSG 60 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102 + L+E+++ R + + F+ ++V + G L+ Sbjct: 61 VPLTEALAAFSRRTKIAPLVRFTDGLTVAVERGTPLAGVF 100 >gi|153811267|ref|ZP_01963935.1| hypothetical protein RUMOBE_01659 [Ruminococcus obeum ATCC 29174] gi|149832765|gb|EDM87849.1| hypothetical protein RUMOBE_01659 [Ruminococcus obeum ATCC 29174] Length = 342 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 54/155 (34%), Gaps = 8/155 (5%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-------RVIETQ 59 KR + L D+P+ + ++AG+ V A I E R Sbjct: 188 KRAEQLLMDYPSLIMKFTLLIQAGMTVRRAFQKISSDYLRNCPKEGRYAYEAVTTTCHEM 247 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAK 118 G++ E+ R + FST++ + G +++ L + D + KA+ Sbjct: 248 DSGVAELEAYRRFGERCGQMKYKTFSTILIQNLQKGGHRMADLLEKEALEAWDERKRKAR 307 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153 V + K +I L ++ ++ + Sbjct: 308 VMGETAATKLLVPMIMMLAVVMAIIMIPAFLSFYG 342 >gi|330816719|ref|YP_004360424.1| Type II secretion system protein [Burkholderia gladioli BSR3] gi|327369112|gb|AEA60468.1| Type II secretion system protein [Burkholderia gladioli BSR3] Length = 329 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ R ++ P +D++ GL + ++ VI + E Sbjct: 166 IRRKAAARRESVAEEMPLFVDMLRLLQGVGLSLDQSMQVISHDFTTMLPVLSWELGVAQR 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S++R+ +++ ++ + GG + E L LRD + Sbjct: 226 QFAAGRTREQSLARLTSSFDNEDLRSIVRLLIQVDKHGGAVQEPLRMFGDRLRDGRRALL 285 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + K + +I +L + L+ PG M V+ Sbjct: 286 RERIGRLTVKMTGVMIVTLLPAL--LIVTAGPGIMTVV 321 >gi|310829688|ref|YP_003962045.1| putative type II secretion pathway protein XcpS [Eubacterium limosum KIST612] gi|308741422|gb|ADO39082.1| putative type II secretion pathway protein XcpS [Eubacterium limosum KIST612] Length = 396 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/176 (10%), Positives = 55/176 (31%), Gaps = 7/176 (3%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLS 64 KK + + I + +G+ V A+++++ + V ++ + G++ Sbjct: 49 KKAYKMKNMELSDFSREIENMLASGITVIRALSIMMERNIKPNVAKVYKALYREVQQGIT 108 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 LSE++ P + + G ++E ++ + K++ + Sbjct: 109 LSEAMENSRGSFPQ-----LIINMFRAGESSGQMAETAHKMALYYEKEHRLHTKIRNAMI 163 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA-FMLIGIMVM 179 + + T + + ++ + + FM + Sbjct: 164 YPILLLVATVVVVIGLFTFILPQFFDLFEGMDAALPAITVMVIGISNFMTANWYWL 219 >gi|257784834|ref|YP_003180051.1| type II secretion system protein [Atopobium parvulum DSM 20469] gi|257473341|gb|ACV51460.1| type II secretion system protein [Atopobium parvulum DSM 20469] Length = 204 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 59/146 (40%), Gaps = 3/146 (2%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSE 67 L + P +DI++ + +GL A+ + + S + E T LG + E Sbjct: 57 RKSCLREMPEMIDILILGLSSGLSFDSALDLYCLRESGELSKELSNAHMTWKLGANTREE 116 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++++M + + + F+TV++ G L+E L + +LRD + + + + K Sbjct: 117 ALNQMAARVGVPSLKSFATVVNEALTFGTPLAEILDRQASVLRDEQRSLLETEIEKIPIK 176 Query: 128 ASAWIIGSLPFCVSTLVY--FTSPGY 151 + + + + P + Sbjct: 177 MLIPLGTLIVPAMLLAILGPLLGPAF 202 >gi|254517129|ref|ZP_05129187.1| general secretion pathway protein F [gamma proteobacterium NOR5-3] gi|219674634|gb|EED31002.1| general secretion pathway protein F [gamma proteobacterium NOR5-3] Length = 401 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 52/158 (32%), Gaps = 6/158 (3%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +RAGLP+ ++ V++ +S + + V+++ G +LS ++ Sbjct: 71 LAVLLRAGLPLDRSLKVLIEMASLPSMAALLSDVLKSVKDGKALSIALEPYSELFG---- 126 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F + + G +S L L L K + V + + + + Sbjct: 127 -RFYLSMLRSGEASGEMSAVLDRLVAHLETAKATRDSVVSALIYPAILLVVAVLSIVVML 185 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V N + + AA + G + Sbjct: 186 AFVVPQFETLFNDMGESLPTLTRAVINAADFVTGWFWL 223 >gi|154174517|ref|YP_001408338.1| type II secretion system protein [Campylobacter curvus 525.92] gi|112803195|gb|EAU00539.1| type II secretion system protein [Campylobacter curvus 525.92] Length = 415 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 55/166 (33%), Gaps = 6/166 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + + AG+ + D++ + + D + I + Sbjct: 76 LVATIRQLSVMTNAGISIHDSIKEVANSTEDKRLKVIFQTINEDLNQG----ASLTDSML 131 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 QE+ S + + GN++++L+ L+ IL++ + + K + I Sbjct: 132 AFQQEMGDVSIAMIRLGESTGNMADSLSKLASILQEVWDNQQKFKKAIRYPITVICAIIL 191 Query: 136 LPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVM 179 + T+V L + +LLG+ A G ++ Sbjct: 192 AFIVLMTMVVPKFREIFEQLNAELPLPTKILLGIEYAMNNYGFYIL 237 >gi|325275692|ref|ZP_08141581.1| general secretion pathway protein F [Pseudomonas sp. TJI-51] gi|324099178|gb|EGB97135.1| general secretion pathway protein F [Pseudomonas sp. TJI-51] Length = 401 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 59/156 (37%), Gaps = 9/156 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + ++AGLP+++A+ + Q + R R V E G +L+++++ R P Sbjct: 67 LTRQLATLLQAGLPLTEALQAVAEQGTRRQERQVLRGVAERVAEGHALAQALAHYPRAFP 126 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + + G L++ L L+ D + ++ KVQ + ++ Sbjct: 127 VIYRATVAAA-----ERSGRLADVLERLAAHGEDEQALRQKVQLAMVYPV---ILLAVSL 178 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 V L+ + P + D L + Sbjct: 179 LVVGFLLGYVVPDVVQAFSRDQARLPLATQVLIALS 214 >gi|213855587|ref|ZP_03383827.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 289 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + +L G L+E L+R + ++ + V+ Sbjct: 117 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPA---I 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183 I+ V +++F P + + + LL + G L++ Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGPAWGWLIL 221 >gi|314972765|gb|EFT16862.1| type II secretion system F domain protein [Propionibacterium acnes HL037PA3] Length = 288 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 19/169 (11%), Positives = 60/169 (35%), Gaps = 1/169 (0%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ++ + + + G + AV + ++ + +++ + E+ R Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGAVDQLVSRLDGRMEPREAFQR 163 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + E +++ + S L ++ ++ R + +V+A + + + Sbjct: 164 MADELDSSEADAVLASLALAATHPRGASVTLKAIAGTIQQRLKVLRQVEAERSKPRNAVR 223 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I + + ++ ++ L P G +L+ A + ++ M Sbjct: 224 QITLVTIAMFGVLLVVGRSFLAPL-ATPPGQVLVTAAVVMYVTALVQMY 271 >gi|327456790|gb|EGF03445.1| type II secretion system F domain protein [Propionibacterium acnes HL087PA3] Length = 288 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 61/169 (36%), Gaps = 1/169 (0%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ++ + + + G + AV + ++ + +++ + E+ R Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + E +++ + S L ++ ++ R + +V+A + + S Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I + + + ++ L P G +L+ VA +I ++ M Sbjct: 224 QITLVTIAMFGGLLVIGRSFLAPL-ATPPGQVLVAVAVVMYVIALVQMY 271 >gi|270156625|ref|ZP_06185282.1| type IV pilus assembly protein PilC [Legionella longbeachae D-4968] gi|289164922|ref|YP_003455060.1| pilus assembly protein PilC [Legionella longbeachae NSW150] gi|269988650|gb|EEZ94904.1| type IV pilus assembly protein PilC [Legionella longbeachae D-4968] gi|288858095|emb|CBJ11957.1| pilus assembly protein PilC [Legionella longbeachae NSW150] Length = 406 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 21/186 (11%), Positives = 57/186 (30%), Gaps = 14/186 (7%) Query: 1 MKHLIKKR--------TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSE 51 + ++KKR D + + +G+P+ + ++ Q++ ++ Sbjct: 46 ISKIVKKRSPILKRNSKKVKSSDITVFSRQLATMIESGIPLVQSFDIVAKGQTNTRLKEL 105 Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111 ++ GL+LSE++ + + + + + G+L L ++ Sbjct: 106 IEQIKHDVETGLTLSEALKKHPSH-----FNDLFCNLVDAGEKSGSLDIMLNKIATYKEK 160 Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 + +K K++ A + + + V D V + Sbjct: 161 IETIKKKIKKALTYPMAVIVVALIVTAGLLIFVVPQFEALFKGFGADLPMMTKTVVELSK 220 Query: 172 MLIGIM 177 Sbjct: 221 FFQSYW 226 Score = 35.9 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 14/136 (10%), Positives = 44/136 (32%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72 + + AGLP+ +A+ + G + + + S ++ + G +++++ Sbjct: 271 AAIARFARTLSITFAAGLPLVEALKSVAGATGNIIFSNATNKIRDEVSTGQQMNKAMEN- 329 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 Q + + G L L+ ++ + + + +E + Sbjct: 330 -----TQLFPNMVIQMVAIGEESGALERMLSKVADFYEEDVDNAVDSLSSLLEPIIMTIL 384 Query: 133 IGSLPFCVSTLVYFTS 148 + V ++ Sbjct: 385 GVLVGGLVVSMYLPIF 400 >gi|118497706|ref|YP_898756.1| Type IV pili polytopic inner membrane protein [Francisella tularensis subsp. novicida U112] gi|194323678|ref|ZP_03057454.1| bacterial type II secretion system protein F domain protein [Francisella tularensis subsp. novicida FTE] gi|208779771|ref|ZP_03247115.1| bacterial type II secretion system protein F domain protein [Francisella novicida FTG] gi|254374524|ref|ZP_04990005.1| type IV pili polytopic inner membrane protein [Francisella novicida GA99-3548] gi|82453034|gb|ABB76145.1| PilC [Francisella novicida] gi|118423612|gb|ABK90002.1| Type IV pili polytopic inner membrane protein [Francisella novicida U112] gi|151572243|gb|EDN37897.1| type IV pili polytopic inner membrane protein [Francisella novicida GA99-3548] gi|194322042|gb|EDX19524.1| bacterial type II secretion system protein F domain protein [Francisella tularensis subsp. novicida FTE] gi|208744226|gb|EDZ90526.1| bacterial type II secretion system protein F domain protein [Francisella novicida FTG] gi|328675935|gb|AEB28610.1| Type IV pili polytopic inner membrane protein [Francisella cf. novicida 3523] Length = 409 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 21/155 (13%), Positives = 50/155 (32%), Gaps = 10/155 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVA--VIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 D + +AG+P+ + ++ + ++ + + G S S+++S Sbjct: 69 QDITEMTRQLATMTKAGIPIIKSFEVFIMGIRKHPRLKILAIEIKQAIEGGESFSKALSN 128 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + GNL L ++ +++K KV+ Sbjct: 129 FPKI-----FDKLYVGLITAGEESGNLDLMLNKIADQREALQSIKKKVKKALSYPIIVCI 183 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 I L+ F P + + IN + + Sbjct: 184 IAAG---VTGILLTFAVPAFSAMFINSGKPLPAIT 215 Score = 33.9 bits (76), Expect = 9.5, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 49/149 (32%), Gaps = 15/149 (10%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESIS 70 F + +V++G+ ++ A+ ++ + + ++ + G S E+I Sbjct: 272 FKSSLARFASTLEITVQSGMSLTRALDMVSLATGNAKYDQAALDIKKSINEGASFKEAIV 331 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 F + + G L L NL+R+ ++ + ++ S+ Sbjct: 332 ETGN------FPFLVEQMIAVGEESGALETMLGNLNRVYQEEVD--------TLVGSLSS 377 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDP 159 + + + +V F + Sbjct: 378 MLEPLIMIVLGGVVGFLVVSMYMPMFQMG 406 >gi|332359563|gb|EGJ37382.1| bacterial type II secretion system protein F [Streptococcus sanguinis SK1056] Length = 408 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 51/174 (29%), Gaps = 10/174 (5%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 L D + + +G+P+++AV ++ Q+ +VI + Sbjct: 57 KKIKLKDISLFCKQMSVMLNSGIPLNNAVDILEQQTDAKNLKASLKVISKGLKEGN---- 112 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + G L E L +S +++ + Sbjct: 113 QLSKALIEQNGLFPDLLIRMVQAGEKTGKLDEVLERMSEHYNKELKTSRQIRGAMIYPAV 172 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGIMVM 179 A++ + L+Y P + + L + +AA+ + + Sbjct: 173 LAFLAVAATLV---LLYVVIPNFSGIFEQSGVALPLPTRIVLAASNFVQSYWYI 223 Score = 39.7 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ +A+ +++ V + R+ L + Sbjct: 270 FASTLATLTSAGIPLVEAIDSAAATTNNAVVIDKLRIANE-----GLQKGERLTGMLTST 324 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G+L L S + K +E + + Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLNKTSDFYEEELEAAIKQLLSLLEPAMIIIMGVIIGG 384 Query: 139 CVSTLVYFTS 148 V++++ Sbjct: 385 IVASVMLPMF 394 >gi|254483146|ref|ZP_05096380.1| Bacterial type II secretion system protein F domain [marine gamma proteobacterium HTCC2148] gi|214036668|gb|EEB77341.1| Bacterial type II secretion system protein F domain [marine gamma proteobacterium HTCC2148] Length = 401 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 23/168 (13%), Positives = 55/168 (32%), Gaps = 6/168 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + +RAGLP+ A+ V++ + ++ +++ G +LS ++ + Sbjct: 67 MTSELAVLLRAGLPLDRALKVLIDMAVQPQMQFLLNDLLKAVKGGKALSIAMQSHEKIFG 126 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 F + + G LSE L L L + K + V + + + Sbjct: 127 -----SFYISMVRSGEASGQLSEVLDRLVEYLENAKANRDSVVSALIYPAILLVVAVLSI 181 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + V + + ++ A + + L++ Sbjct: 182 VLMLGFVVPQFESLFEDMGEALPLLTQMVLSGADFIKSWGWLLLIVII 229 >gi|210614117|ref|ZP_03290053.1| hypothetical protein CLONEX_02266 [Clostridium nexile DSM 1787] gi|210150818|gb|EEA81826.1| hypothetical protein CLONEX_02266 [Clostridium nexile DSM 1787] Length = 430 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 52/156 (33%), Gaps = 9/156 (5%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--------VRSEFR 53 + K R + L D+P ++ + G+ + IV + E R Sbjct: 270 QKARKARKEQMLTDYPEIINKFALLLSTGMTTKNVWERIVKNYEEQKICTGERAAYEEMR 329 Query: 54 RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDR 112 G++ +E+ R + + F +++ + +++ L N S + Sbjct: 330 YTCNEMQSGITEAEAYERFGKRCGISVYMKFGALLAQNLKKGTKGMTDLLRNESDQAFEN 389 Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 + +AK K A + G L + ++ Sbjct: 390 RKSRAKRLGEEAGTKLLAPMFGMLAIVLVIVIVPAF 425 >gi|323934475|gb|EGB30883.1| general secretion pathway protein F [Escherichia coli E1520] Length = 398 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 27/198 (13%), Positives = 60/198 (30%), Gaps = 29/198 (14%) Query: 5 IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62 +K R + + + A LP+ +++AVI QSS+ + +V G Sbjct: 49 VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLGDVLNQVRSAILEG 108 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS+++ + + G L+ L L+ +R+ +++K+ Sbjct: 109 HPLSDALQHFPTL-----FDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQS 163 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP-------------------RGHM 163 + + V L+ P ++ G Sbjct: 164 LIYP---CMLTTVAIGVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRTGPT 220 Query: 164 LLGVAAAFMLIGIMVMRL 181 LL + + ++ Sbjct: 221 LLATVFIVAVGFWLWLKR 238 >gi|319937245|ref|ZP_08011652.1| type II secretion system protein [Coprobacillus sp. 29_1] gi|319807611|gb|EFW04204.1| type II secretion system protein [Coprobacillus sp. 29_1] Length = 396 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 24/180 (13%), Positives = 57/180 (31%), Gaps = 9/180 (5%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSE 67 L D + + +G+ + + +I + +++ ++ V GLSLS Sbjct: 52 KKMKLKDLSEFCRELGTMLSSGISLIMTINIITKRTTDPKLQAVYKDVYVKLQQGLSLSS 111 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ P + S+ G + LS ++ KV++ + Sbjct: 112 ALEAQGELFP-----SLMINMFRASESTGMMDRTAMKLSVQFDKDNKLQNKVKSAMLYPM 166 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + + V T++ P + +V P + + + +I V Sbjct: 167 ILIVVTVCVVIAVFTMIL---PNFFDVFEGTPIPLITQIMFGISKAMTAYWEWFLIGILV 223 >gi|260892929|ref|YP_003239026.1| Type II secretion system F domain protein [Ammonifex degensii KC4] gi|260865070|gb|ACX52176.1| Type II secretion system F domain protein [Ammonifex degensii KC4] Length = 305 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 60/147 (40%), Gaps = 1/147 (0%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 P +D++ SV AGL A+ +V + P+ E R ++ +G E++ M Sbjct: 158 RRQLPEVIDLLTVSVEAGLGFEGALTRVVEKMDGPLPQEICRALQEIRVGRPRREALREM 217 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA-SAW 131 + + ++E+ F + + Q+G +L+ L S+ +R R+ +A+ A K Sbjct: 218 AQRIGVEELLSFVGAVIMAEQMGVSLARVLRLQSQEIRRRRRQQAQEAAFKAPVKMLLPL 277 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLIND 158 ++ P L+ M Sbjct: 278 VLCIFPATFVVLLGPAVLRIMRFFGKS 304 >gi|288814578|gb|ADC54375.1| putative general secretion pathway protein F [Stenotrophomonas maltophilia] Length = 399 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 58/166 (34%), Gaps = 8/166 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 + A + + A LP+ A++ ++ Q+ V V G L+ +++ Sbjct: 61 ELAWATRQLASLLAASLPLEGALSAVIEQAERPHVAQALTAVRADVRAGQRLTVALAARP 120 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R P + + G+L+ + L+ + +R ++AKV + A + + Sbjct: 121 RDFPP-----IYRALVGAGEDSGDLARVMERLADYIEERNALQAKVLTAFIYPAAISLVS 175 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIM 177 ++ + + V ++L +A G+ Sbjct: 176 VAIVIFLLSYVVPQVVTAFVQARQTLPMLTQVMLAASAFVRSWGVW 221 Score = 37.8 bits (86), Expect = 0.69, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 38/130 (29%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P+ A+ + + V G +L ++ Sbjct: 268 FASTLAILLDAGVPLLRALEAARQTLGNALLARCADDVSARVREGAALGAALKV------ 321 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G+L+ L ++ + +A +E + G + Sbjct: 322 QKVYPPILVHLVASGEKTGSLAPLLDRAAQTISREIERRAMALTALLEPTMILVMGGVVL 381 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 382 TIVLAVLMPI 391 >gi|238791187|ref|ZP_04634826.1| Type II secretion system protein [Yersinia intermedia ATCC 29909] gi|238729320|gb|EEQ20835.1| Type II secretion system protein [Yersinia intermedia ATCC 29909] Length = 366 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 51/143 (35%), Gaps = 6/143 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + + ++AGLP+ +++ ++ + P R + + + GLSLSE+++R Sbjct: 25 ERLVAVTRQLATLLQAGLPLVNSLQLLAKEIDALPWRCLLQDISQQVSQGLSLSEAMARY 84 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P + +L GNL + L + ++ ++ KV I Sbjct: 85 PHTFP-----RLYPPVIAMGELTGNLEQCCIQLVQHQERQQKLQKKVIKALKYPVFVCII 139 Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155 + + +V Sbjct: 140 AMVVSLVMLVMVLPEFAQIYQSF 162 Score = 34.7 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 41/134 (30%), Gaps = 6/134 (4%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74 + + AGLP++ + + ++ + R + + + G L ++++ R Sbjct: 231 LSQIFQTLAITQHAGLPLTAGLDAALLSINNCAYQQALRHIQQQINQGEPLHTALAQQHR 290 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 P + + G L L L+ + + A +E I Sbjct: 291 LFPP-----LCQQMVRVGEESGALDVLLEKLASWHQQKTQDLADNLTQMLEPLLMLIIGS 345 Query: 135 SLPFCVSTLVYFTS 148 + V + Sbjct: 346 IVGVLVIAMYLPIF 359 >gi|307293362|ref|ZP_07573208.1| general secretion pathway protein F [Sphingobium chlorophenolicum L-1] gi|306881428|gb|EFN12644.1| general secretion pathway protein F [Sphingobium chlorophenolicum L-1] Length = 405 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 22/171 (12%), Positives = 56/171 (32%), Gaps = 7/171 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 + + ++ P+ +++ I QS VR+ +V G L++++ Sbjct: 66 KELTLFTRQLSTLIQV-SPLEESLRTIGRQSEQPHVRAIVAKVHSGVLEGRRLADALGAE 124 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P + + G+L + LS ++ + +++KV A Sbjct: 125 PKSFPP-----LYRAMVSAGESSGSLPTIMDRLSDLMERQAVIRSKVLTTIAYPSVLAAF 179 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + V + + + + + L G + LM+ Sbjct: 180 AVCVVAALMIFVVPKVVEQFDTVGQQLPLLTRMVMGISTFLAGYWWLLLML 230 >gi|323529408|ref|YP_004231560.1| Type II secretion system F domain-containing protein [Burkholderia sp. CCGE1001] gi|323386410|gb|ADX58500.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1001] Length = 319 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 68/152 (44%), Gaps = 4/152 (2%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSLSES 68 ++ FP+ALD++ V AGL + A+ + G+ S V SE + ++ G + ++ Sbjct: 166 IVEGFPDALDLLTVCVEAGLGMDAALMRVAGEMQLASPEVASELQLMLLELRSGFTKEKA 225 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME-AK 127 + + ++ F++++ + G ++ +L +S LR R+ M+A+ +A + Sbjct: 226 LRNFALRTGVDDIDTFASMLVQADRFGTSIGASLRVMSDTLRTRRRMRAEERAAKIALKL 285 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159 I P ++ L+ VL+ Sbjct: 286 LFPLIFCIFPALMTVLMGPAFIHIYRVLLPTL 317 >gi|332678420|gb|AEE87549.1| Type IV pili polytopic inner membrane protein [Francisella cf. novicida Fx1] Length = 409 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 21/155 (13%), Positives = 50/155 (32%), Gaps = 10/155 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVA--VIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 D + +AG+P+ + ++ + ++ + + G S S+++S Sbjct: 69 QDITEMTRQLATMTKAGIPIIKSFEVFIMGIRKHPRLKILAIEIKQAIEGGESFSKALSN 128 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + GNL L ++ +++K KV+ Sbjct: 129 FPKI-----FDKLYVGLITAGEESGNLDLMLNKIADQREALQSIKKKVKKALSYPIIVCI 183 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 I L+ F P + + IN + + Sbjct: 184 IAAG---VTGILLTFAVPAFSAMFINSGKPLPAIT 215 >gi|320180162|gb|EFW55101.1| General secretion pathway protein F [Shigella boydii ATCC 9905] Length = 398 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 27/198 (13%), Positives = 60/198 (30%), Gaps = 29/198 (14%) Query: 5 IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62 +K R + + + A LP+ +++AVI QSS+ + +V G Sbjct: 49 VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLADVLNQVRSAILEG 108 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS+++ + + G L+ L L+ +R+ +++K+ Sbjct: 109 HPLSDALQHFPTL-----FDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQS 163 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP-------------------RGHM 163 + + V L+ P ++ G Sbjct: 164 LIYP---CMLTTVAIGVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRTGPT 220 Query: 164 LLGVAAAFMLIGIMVMRL 181 LL + + ++ Sbjct: 221 LLATVFIVAVGFWLWLKR 238 >gi|239917280|ref|YP_002956838.1| Flp pilus assembly protein TadC [Micrococcus luteus NCTC 2665] gi|281414242|ref|ZP_06245984.1| Flp pilus assembly protein TadC [Micrococcus luteus NCTC 2665] gi|239838487|gb|ACS30284.1| Flp pilus assembly protein TadC [Micrococcus luteus NCTC 2665] Length = 313 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 58/142 (40%), Gaps = 2/142 (1%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 L +FP+ ++ SV AG + A+ I G + + EFR + G SLS ++ Sbjct: 167 EAILSEFPSVAELFALSVGAGESAAGALERIAGTARGELAGEFRTTLADMRAGASLSAAL 226 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 M R + L V F + + G L++ L ++ +R+ + ++ + + Sbjct: 227 KAMGRRVQLAPVERFIGGVLIALDRGTPLADVLRAQAQDVRE--MGRRELMEAAGRKEIQ 284 Query: 130 AWIIGSLPFCVSTLVYFTSPGY 151 + T+++ PG Sbjct: 285 MMVPLVFGILPLTVIFAVFPGI 306 >gi|118443786|ref|YP_877676.1| pilin biogenesis protein [Clostridium novyi NT] gi|118134242|gb|ABK61286.1| probable pilin biogenesis protein [Clostridium novyi NT] Length = 402 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 20/159 (12%), Positives = 47/159 (29%), Gaps = 6/159 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 D + AG + ++V ++ Q+ ++ V E G +LS + + Sbjct: 62 SKDLAVFCRQFATLLDAGADILNSVDLLRKQAENPKLKDSLEVVYEEIQKGYTLSSCMDK 121 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P + + G L + ++ + +K++ M Sbjct: 122 FKDVYPK-----LLVNMVRSGEETGQLGSVMEKMAEQYEREHRINSKIKGAFMYPIILII 176 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + S + T V T + G + + + Sbjct: 177 VCVSAVTFLLTCVMPTFVQMFEDSGVELPGPTKVVMGIS 215 Score = 40.5 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 14/147 (9%), Positives = 43/147 (29%), Gaps = 7/147 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +KK K + + ++ +G+ + +A++++ + + S Sbjct: 259 VKKTMRKIVAM--RFSRGLSTTLYSGVSMINALSIVAKVIDNKLIEVKIMKARE-----S 311 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + + I+ + E ++ + G L + L + + M Sbjct: 312 VIKGITLSESLRDITEFPEMLFAMTKIGEESGRLDDILEKTATFYEQEVEESLEKMTSMM 371 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGY 151 E + + V + + Sbjct: 372 EPILIVVMGILIGAIVVAMAMPMFDMF 398 >gi|332382440|gb|AEE67287.1| hypothetical protein BPTD_1970 [Bordetella pertussis CS] Length = 328 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 62/146 (42%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + I +R + P +D++ GL V ++ V++ + E + E Sbjct: 163 LLRRIARRRECAEAELPLFIDLLRLLQGVGLSVDQSMHVLIQDFRSVMPVLGGELKIAAE 222 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+SR+ + ++S +I + GG + + LA + +R+R+ ++ Sbjct: 223 QYARGRTREQSLSRLAQGFDNDDLSAICRLIVQVDRHGGAVQDPLARFAERVRERRRLEL 282 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 K + + K + ++ +L + + Sbjct: 283 KARVARLTVKMTGVMVVTLLPALLII 308 >gi|209546474|ref|YP_002278392.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537718|gb|ACI57652.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 314 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 21/146 (14%), Positives = 61/146 (41%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS---EFRRVIE 57 + + ++ FP+ +D+++ + AG+ + A + + D + ++ Sbjct: 149 IDRRGAAKEREYRRLFPDFMDMLIVCLDAGMSIEAAANRVAREFVDKRQDFGLHLSIMML 208 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G L E+++ + + + E S + +LG ++++ L + +RD + ++A Sbjct: 209 EVRGGRRLREALANLAIRLRIDEARALSVLFRQSEELGTSVTQTLRVYCKEMRDIRIVRA 268 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A ++ K + L + Sbjct: 269 EEKANALPVKMLLPLGAFLFPVSLII 294 >gi|269469296|gb|EEZ80804.1| type II secretory component PulF [uncultured SUP05 cluster bacterium] Length = 412 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 18/153 (11%), Positives = 53/153 (34%), Gaps = 9/153 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + +RAGLP+ + +++I Q+ + ++ ++ G LS+S + Sbjct: 75 FTKKLETMIRAGLPILETISMIEKQTINPTLKQVITQIHNDVESGTPLSDSFVKHP---- 130 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G + L+ L + + +++ ++ ++ Sbjct: 131 -YVFNNVYINLLRAGESSGKVDLFLSKLVIGMEKDEKIRSSIKGALTYPI---VLLVVAI 186 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + ++ F P + ++ P G Sbjct: 187 AVIVLMMVFVVPVFQDMFKGVPGGLPATTQIVV 219 Score = 38.6 bits (88), Expect = 0.47, Method: Composition-based stats. Identities = 20/159 (12%), Positives = 52/159 (32%), Gaps = 16/159 (10%) Query: 2 KHLIKKRTAKFLDDFPNA--------LDIIVR----SVRAGLPVSDAVAVIVGQSSDPVR 49 + I++ KF+ P L I AG+PV +A+ + + + + Sbjct: 252 SYKIRRNWHKFILKLPLFGELIQKSALSKIAMIQGNLTAAGVPVMEALDIAATSNDNIII 311 Query: 50 SEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL 109 E ++ S ++ T ++ + GN+ E +++R Sbjct: 312 KEAMIEVKK----GVFSGEPLSVLFEKEPSIFPATFTAMTSVGEKTGNMEEMFESIARYY 367 Query: 110 RDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 + ++ +E ++ ++ F + + Sbjct: 368 EEEMDITIAQLTSMLEPIMIVFMGVTIGFILVAMYTPMF 406 >gi|254373072|ref|ZP_04988561.1| hypothetical protein FTCG_00647 [Francisella tularensis subsp. novicida GA99-3549] gi|151570799|gb|EDN36453.1| hypothetical protein FTCG_00647 [Francisella novicida GA99-3549] Length = 407 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 21/155 (13%), Positives = 50/155 (32%), Gaps = 10/155 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVA--VIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 D + +AG+P+ + ++ + ++ + + G S S+++S Sbjct: 67 QDITEMTRQLATMTKAGIPIIKSFEVFIMGIRKHPRLKILAIEIKQAIEGGESFSKALSN 126 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + GNL L ++ +++K KV+ Sbjct: 127 FPKI-----FDKLYVGLITAGEESGNLDLMLNKIADQREALQSIKKKVKKALSYPIIVCI 181 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 I L+ F P + + IN + + Sbjct: 182 IAAG---VTGILLTFAVPAFSAMFINSGKPLPAIT 213 >gi|218779629|ref|YP_002430947.1| type II secretion system protein [Desulfatibacillum alkenivorans AK-01] gi|218761013|gb|ACL03479.1| Type II secretion system protein, PilC [Desulfatibacillum alkenivorans AK-01] Length = 403 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 18/138 (13%), Positives = 44/138 (31%), Gaps = 6/138 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AGLP+ + ++ + + + R V + G +L++++ + Sbjct: 68 FARQFSTMIDAGLPLIQCLDILHSQEENKTFKKTLRDVKSSVEGGSTLADALRKYPNQ-- 125 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++GG L L L+ + +KA+V+ + + Sbjct: 126 ---FDDLFVNMVAAGEIGGILDTILQRLAAYMEKAAALKARVKGALTYPIIVIIVAAIVV 182 Query: 138 FCVSTLVYFTSPGYMNVL 155 + V T Sbjct: 183 GVILVFVIPTFEKMFADF 200 Score = 41.3 bits (95), Expect = 0.063, Method: Composition-based stats. Identities = 10/130 (7%), Positives = 35/130 (26%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+ + D++ ++ +S E + + + Sbjct: 271 FTRTMGTMMSSGVSILDSLDIVAK-TSGNKTVEKAIFSVRAGITEGRTMADPLA----ET 325 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L L ++ + + +E A++ + Sbjct: 326 GVFPSMVVQMISVGEQTGALDTMLEKIADFYDNEVDQAVDNLTSMIEPFMMAFLGVVVGG 385 Query: 139 CVSTLVYFTS 148 V ++ Sbjct: 386 LVISMYLPVF 395 >gi|16131206|ref|NP_417786.1| general secretory pathway component, cryptic [Escherichia coli str. K-12 substr. MG1655] gi|89110683|ref|AP_004463.1| general secretory pathway component, cryptic [Escherichia coli str. K-12 substr. W3110] gi|157162801|ref|YP_001460119.1| general secretion pathway protein F [Escherichia coli HS] gi|170018437|ref|YP_001723391.1| general secretion pathway protein F [Escherichia coli ATCC 8739] gi|170082846|ref|YP_001732166.1| general secretory pathway component, cryptic [Escherichia coli str. K-12 substr. DH10B] gi|188492194|ref|ZP_02999464.1| general secretion pathway protein F [Escherichia coli 53638] gi|194439988|ref|ZP_03072047.1| general secretion pathway protein F [Escherichia coli 101-1] gi|238902418|ref|YP_002928214.1| general secretory pathway component, cryptic [Escherichia coli BW2952] gi|253771849|ref|YP_003034680.1| general secretion pathway protein F [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038488|ref|ZP_04872544.1| general secretory pathway component [Escherichia sp. 1_1_43] gi|254163255|ref|YP_003046363.1| general secretory pathway component, cryptic [Escherichia coli B str. REL606] gi|256025945|ref|ZP_05439810.1| general secretory pathway component, cryptic [Escherichia sp. 4_1_40B] gi|300903575|ref|ZP_07121497.1| general secretion pathway protein F [Escherichia coli MS 84-1] gi|300918300|ref|ZP_07134904.1| general secretion pathway protein F [Escherichia coli MS 115-1] gi|300932220|ref|ZP_07147499.1| general secretion pathway protein F [Escherichia coli MS 187-1] gi|301021123|ref|ZP_07185163.1| general secretion pathway protein F [Escherichia coli MS 196-1] gi|301305536|ref|ZP_07211628.1| general secretion pathway protein F [Escherichia coli MS 124-1] gi|301643853|ref|ZP_07243884.1| general secretion pathway protein F [Escherichia coli MS 146-1] gi|307140010|ref|ZP_07499366.1| general secretory pathway component, cryptic [Escherichia coli H736] gi|312972412|ref|ZP_07786586.1| general secretion pathway protein F [Escherichia coli 1827-70] gi|331644023|ref|ZP_08345152.1| general secretion pathway protein F [Escherichia coli H736] gi|1170055|sp|P41441|GSPF_ECOLI RecName: Full=Putative general secretion pathway protein F; AltName: Full=Protein transport protein hofF gi|606261|gb|AAA58124.1| ORF_o398 [Escherichia coli str. K-12 substr. MG1655] gi|1789724|gb|AAC76352.1| general secretory pathway component, cryptic [Escherichia coli str. K-12 substr. MG1655] gi|85676714|dbj|BAE77964.1| general secretory pathway component, cryptic [Escherichia coli str. K12 substr. W3110] gi|157068481|gb|ABV07736.1| general secretion pathway protein F [Escherichia coli HS] gi|169753365|gb|ACA76064.1| general secretion pathway protein F [Escherichia coli ATCC 8739] gi|169890681|gb|ACB04388.1| general secretory pathway component, cryptic [Escherichia coli str. K-12 substr. DH10B] gi|188487393|gb|EDU62496.1| general secretion pathway protein F [Escherichia coli 53638] gi|194421096|gb|EDX37124.1| general secretion pathway protein F [Escherichia coli 101-1] gi|226838994|gb|EEH71017.1| general secretory pathway component [Escherichia sp. 1_1_43] gi|238861293|gb|ACR63291.1| general secretory pathway component, cryptic [Escherichia coli BW2952] gi|242378854|emb|CAQ33646.1| gspF [Escherichia coli BL21(DE3)] gi|253322893|gb|ACT27495.1| general secretion pathway protein F [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975156|gb|ACT40827.1| general secretory pathway component, cryptic [Escherichia coli B str. REL606] gi|253979312|gb|ACT44982.1| general secretory pathway component, cryptic [Escherichia coli BL21(DE3)] gi|260447654|gb|ACX38076.1| general secretion pathway protein F [Escherichia coli DH1] gi|299881653|gb|EFI89864.1| general secretion pathway protein F [Escherichia coli MS 196-1] gi|300404448|gb|EFJ87986.1| general secretion pathway protein F [Escherichia coli MS 84-1] gi|300414561|gb|EFJ97871.1| general secretion pathway protein F [Escherichia coli MS 115-1] gi|300460044|gb|EFK23537.1| general secretion pathway protein F [Escherichia coli MS 187-1] gi|300839231|gb|EFK66991.1| general secretion pathway protein F [Escherichia coli MS 124-1] gi|301077756|gb|EFK92562.1| general secretion pathway protein F [Escherichia coli MS 146-1] gi|310334789|gb|EFQ00994.1| general secretion pathway protein F [Escherichia coli 1827-70] gi|315137902|dbj|BAJ45061.1| general secretory pathway component, cryptic [Escherichia coli DH1] gi|315255910|gb|EFU35878.1| general secretion pathway protein F [Escherichia coli MS 85-1] gi|315618944|gb|EFU99527.1| general secretion pathway protein F [Escherichia coli 3431] gi|323939250|gb|EGB35462.1| general secretion pathway protein F [Escherichia coli E482] gi|323959522|gb|EGB55175.1| general secretion pathway protein F [Escherichia coli H489] gi|323970131|gb|EGB65405.1| general secretion pathway protein F [Escherichia coli TA007] gi|331036317|gb|EGI08543.1| general secretion pathway protein F [Escherichia coli H736] gi|332345273|gb|AEE58607.1| general secretion pathway protein GspF [Escherichia coli UMNK88] Length = 398 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 27/198 (13%), Positives = 60/198 (30%), Gaps = 29/198 (14%) Query: 5 IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62 +K R + + + A LP+ +++AVI QSS+ + +V G Sbjct: 49 VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLGDVLNQVRSAILEG 108 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS+++ + + G L+ L L+ +R+ +++K+ Sbjct: 109 HPLSDALQHFPTL-----FDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQS 163 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP-------------------RGHM 163 + + V L+ P ++ G Sbjct: 164 LIYP---CMLTTVAIGVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRTGPT 220 Query: 164 LLGVAAAFMLIGIMVMRL 181 LL + + ++ Sbjct: 221 LLATVFIVAVGFWLWLKR 238 >gi|325689286|gb|EGD31292.1| bacterial type II secretion system protein F [Streptococcus sanguinis SK115] Length = 408 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 51/174 (29%), Gaps = 10/174 (5%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 L D + + +G+P+++AV ++ Q+ +VI + Sbjct: 57 KKIKLKDISLFCKQMSVMLNSGIPLNNAVDILEQQTDAKNLKASLKVISKGLKEGN---- 112 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + G L E L +S +++ + Sbjct: 113 QLSKALIEQNGLFPDLLIRMVQAGEKTGKLDEVLERMSEHYNKELKTSRQIRGAMIYPAV 172 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGIMVM 179 A++ + L+Y P + + L + +AA+ + + Sbjct: 173 LAFLAVAATLV---LLYVVIPNFSGIFEQSGVALPLPTRIVLAASNFVQSYWYI 223 Score = 39.3 bits (90), Expect = 0.21, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ +A+ +++ V + R+ L + Sbjct: 270 FASTLATLTSAGIPLVEAIDSAAATTNNAVVIDKLRIANE-----GLQKGERLTGMLTST 324 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G+L L S + K +E + + Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLNKTSDFYEEELEAAIKQLLSLLEPAMIIIMGVIIGG 384 Query: 139 CVSTLVYFTS 148 V++++ Sbjct: 385 IVASVMLPMF 394 >gi|290512495|ref|ZP_06551861.1| general secretion pathway protein F [Klebsiella sp. 1_1_55] gi|289774836|gb|EFD82838.1| general secretion pathway protein F [Klebsiella sp. 1_1_55] Length = 337 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 17/139 (12%), Positives = 40/139 (28%), Gaps = 7/139 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + V AG+P+ A+ + Q R + L Sbjct: 2 LTRQLATLVAAGIPLEKALDAVAQQCE----KAPLRTLMAGVRSKVLEGHSLAEAMRGYP 57 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G+L L L+ R+ ++A++Q + + Sbjct: 58 ACFDGLFCAMVAAGETSGHLDGVLNRLADYTEQRQQLRARLQQAMIYPI---VLTLVAIS 114 Query: 139 CVSTLVYFTSPGYMNVLIN 157 ++ L+ P + ++ Sbjct: 115 VIAILLSTVVPKVVEQFVH 133 >gi|148555497|ref|YP_001263079.1| type II secretion system protein [Sphingomonas wittichii RW1] gi|148500687|gb|ABQ68941.1| type II secretion system protein [Sphingomonas wittichii RW1] Length = 406 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 56/169 (33%), Gaps = 7/169 (4%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R I V + + + A+ ++ Q+ R + G L Sbjct: 60 RRRVGARALATVTRQIATLVTSEVNIEQALKLVAEQAEG----AALRSLLLDVRGAILDG 115 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + F T + G L++ LA+L+ + +R+ + K+Q + Sbjct: 116 YSFAAALRLHPATFPEFYTASVAAGEQAGRLAQVLAHLADFVENRQRNQQKIQLALLYPA 175 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 A + + ++ L+ + P + V I+ L A + G+ Sbjct: 176 LLAVVSFGM---MALLMVYVVPDIVRVFISRGAELPFLTRALIAISGGL 221 >gi|269961262|ref|ZP_06175629.1| type IV pilin biogenesis protein PilC [Vibrio harveyi 1DA3] gi|269834023|gb|EEZ88115.1| type IV pilin biogenesis protein PilC [Vibrio harveyi 1DA3] Length = 407 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 56/181 (30%), Gaps = 12/181 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D I + G+P+ A+ ++ ++S V G +S+++ Sbjct: 67 KDITVFTRQIATMLMTGVPIVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTA 126 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + GNLS+ L+ + ++AKV + + Sbjct: 127 STHFDPLYTD-----LIATGEQSGNLSQVFERLATYREKSEQLRAKVIKALIYPAMVVLV 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM------LIGIMVMRLMINFD 186 + + + T V D + + + IG+ + L+I Sbjct: 182 ALGVSYLMLTRVIPEFEKMFVGFGADLPAFTQMVLDLSAWTQNWGPFIGLGFLSLLIGSK 241 Query: 187 V 187 V Sbjct: 242 V 242 Score = 38.2 bits (87), Expect = 0.53, Method: Composition-based stats. Identities = 14/136 (10%), Positives = 37/136 (27%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72 + S AG+P+ A+ S + V G+ + ++ Sbjct: 271 AAIAKFSRTLATSFSAGIPILTALKTTSKTSGNMHYQLAIEEVYRDTAAGMPMYIAMRN- 329 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G L + L ++ I + + +E ++ Sbjct: 330 -----CNVFPELVLQMVMIGEESGRLDDMLNKIAAIYEFEVDNTVDNLSKILEPLIIVFL 384 Query: 133 IGSLPFCVSTLVYFTS 148 + V+ + Sbjct: 385 GVVVGGLVTAMYLPIF 400 >gi|223938628|ref|ZP_03630519.1| type II secretion system protein [bacterium Ellin514] gi|223892747|gb|EEF59217.1| type II secretion system protein [bacterium Ellin514] Length = 439 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 9/160 (5%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + V AGLP+ + V+ + + +R + + G + SE +++ + Sbjct: 92 LTTFTRQLATLVDAGLPLLRGLRVLEKQEKNPTLRGIIGDLGASIEGGSTFSEGLAQHPK 151 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + +LGG L L L+ + + +K KV A A + Sbjct: 152 -----VFNRLYINMVKAGELGGVLEVVLNRLAEFMEKAQKIKGKVIAAMFYPVAVLVVAV 206 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + ++ L+ + P + V G L + I Sbjct: 207 VI---MAILMVYVIPQFETVFAGMLEGAQLPAFTRLVLGI 243 Score = 42.8 bits (99), Expect = 0.024, Method: Composition-based stats. Identities = 12/135 (8%), Positives = 36/135 (26%), Gaps = 5/135 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + V +G+P+ A+ ++ + + + + + + R Sbjct: 296 AIARFTRTLGTLVSSGVPILQALNIVKETAGNVIVANAVMAVHESVKEGETITAPLEASR 355 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 P + + G L E L ++ + + +E ++ Sbjct: 356 VFPP-----MVISMVDVGEQTGALPEMLLKIADNYDEEVDNAVSAMTSLLEPIMIVFLAV 410 Query: 135 SLPFCVSTLVYFTSP 149 + V + Sbjct: 411 VVGSIVIAMFLPLIA 425 >gi|152993257|ref|YP_001358978.1| general secretory pathway protein F [Sulfurovum sp. NBC37-1] gi|151425118|dbj|BAF72621.1| general secretory pathway protein F [Sulfurovum sp. NBC37-1] Length = 417 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 67/167 (40%), Gaps = 8/167 (4%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + I AG+P++D + + + + ++ + ++ + G S+S+++ + Sbjct: 79 IRQIAVMTDAGIPITDTLEDVADNTDNQKLKEIYNKMHSDINAGNSMSDAME-----PYI 133 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 E + ++ + GN+SE+ L++IL ++ K + + + Sbjct: 134 DEFGQVALAMTQLGERTGNISESYHKLAKILESIRDNTRKFKKAIRTPMITMAAMAIAFT 193 Query: 139 CVSTLVYFTSPGYMNVLINDP--RGHMLLGVAAAFMLIGIMVMRLMI 183 + +V + + +LL + A G++++ +++ Sbjct: 194 VLIMVVVPKFKDIFDKFKTELPIPTQILLKLEWALSNYGLLILAILV 240 >gi|213027687|ref|ZP_03342134.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 204 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 10/173 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q R + G+ S ++ Sbjct: 5 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 64 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + +L G L+E L+R + ++ + V+ Sbjct: 65 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPA---I 116 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183 I+ V +++F P + + + LL + G L++ Sbjct: 117 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGPAWGWLIL 169 >gi|329765280|ref|ZP_08256860.1| Flp pilus assembly protein TadC [Candidatus Nitrosoarchaeum limnia SFB1] gi|329138186|gb|EGG42442.1| Flp pilus assembly protein TadC [Candidatus Nitrosoarchaeum limnia SFB1] Length = 304 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 75/183 (40%), Gaps = 4/183 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRSEFRRVIETQHL 61 +K R K L++ P+ + + +GL + + I + D V+ + L Sbjct: 115 RVKNRATKLLEEIPHFIGYMSTLATSGLSLEEIFKAIAKEETDEDIVKDARFITRNIEIL 174 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L ++ ++ P S + SQ GG+L E +++ + K M + Sbjct: 175 GMDLITAVKDLINRTPPGPYSELLEGAIITSQSGGDLKEYFNATAKVQLEEKKMLLQKTT 234 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN--DPRGHMLLGVAAAFMLIGIMVM 179 S+ + A + I + F + ++ + G M+ + D M + A L G++++ Sbjct: 235 ESLGSVAEIYTILLIVFPLLAVIMLSIMGIMSPSLGGFDLLTLMNILTFAVIPLSGVLML 294 Query: 180 RLM 182 +M Sbjct: 295 VMM 297 >gi|296101268|ref|YP_003611414.1| protein transport protein HofC [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055727|gb|ADF60465.1| protein transport protein HofC [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 394 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 24/169 (14%), Positives = 59/169 (34%), Gaps = 8/169 (4%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + ++AGL +S ++ ++ Q ++ ++E + LS + S ++ P Sbjct: 61 EMFRQLATLLQAGLTLSQSLQMLAEQHP---VKHWQALLENMNDDLSEGCAFSEALKRWP 117 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 S + +L G L L++ + ++ + AKV+ + + Sbjct: 118 -AVFSPLYVSMVKTGELTGKLETCCRQLAQQQQSQQQLTAKVKKALRYPTIILALAILVV 176 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML----IGIMVMRLM 182 + TLV + + + + I + V+ L+ Sbjct: 177 LAMVTLVLPEFAAIYKTFNTPLPLLTQMVMGLSAFIQTYSIALFVLLLI 225 >gi|238923484|ref|YP_002937000.1| hypothetical protein EUBREC_1104 [Eubacterium rectale ATCC 33656] gi|238875159|gb|ACR74866.1| Hypothetical protein EUBREC_1104 [Eubacterium rectale ATCC 33656] Length = 289 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 64/151 (42%), Gaps = 2/151 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 IKKR+ + L DF N + + AGL + DA A + + + E + ++ G+ Sbjct: 139 KIKKRSEELLSDFSNVVSKLALLTNAGLIMRDAWADVAYNGNTTLYKEMQISVDEMKNGV 198 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S +E+I + E+ F++ I + G + AL L + N+K ++ Sbjct: 199 SETEAIYHFGNRCIIPEIKKFASTIIQGIEKGNSELTAL--LQEQSAETWNLKRQLVKRE 256 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 E +S +I + L+ P + N+ Sbjct: 257 GEKASSKLLIPMFLMFMGILIMVIVPIFTNI 287 >gi|307265193|ref|ZP_07546752.1| Type II secretion system F domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306919815|gb|EFN50030.1| Type II secretion system F domain protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 185 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 6/119 (5%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSE 67 + D + AG+P+ A+A I Q + ++ V E G +LS+ Sbjct: 58 KKVKIKDIAVFCRQFATLINAGIPIVTALATIKEQVENKRLKRAISEVYEEVQKGRTLSD 117 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + P+ + ++ G L + + ++ ++ KV++ Sbjct: 118 AMKKYGDVFPM-----LLYNMVEVGEVSGTLDKVMNEMADHYEKENDLNQKVKSALTYP 171 >gi|167626340|ref|YP_001676840.1| type IV pili polytopic inner membrane protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241668773|ref|ZP_04756351.1| type IV pili polytopic inner membrane protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877304|ref|ZP_05250014.1| type IV pili polytopic inner membrane protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|167596341|gb|ABZ86339.1| type IV pili polytopic inner membrane protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|254843325|gb|EET21739.1| type IV pili polytopic inner membrane protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 410 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 21/155 (13%), Positives = 51/155 (32%), Gaps = 10/155 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVA--VIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 D + +AG+P+ + ++ + ++ ++ + G S S+++S Sbjct: 69 KDITEMTRQLATMTKAGIPIIKSFEVFIMGIRKHPRLKILAIQIKQAIEGGESFSKALSN 128 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + GNL L ++ +++K KV+ Sbjct: 129 FPK-----VFDKLYVGLITAGEESGNLDLMLNKIADQREALESIKKKVKKALSYPIVVCV 183 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 I L+ F P + + IN + + Sbjct: 184 IAAG---VTGILLTFAVPAFSAMFINSGKPLPAIT 215 >gi|326777722|ref|ZP_08236987.1| Type II secretion system F domain protein [Streptomyces cf. griseus XylebKG-1] gi|326658055|gb|EGE42901.1| Type II secretion system F domain protein [Streptomyces cf. griseus XylebKG-1] Length = 307 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 59/174 (33%), Gaps = 12/174 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS------------DPVRSEFRRVIETQHLGLSLSESIS 70 +V +RAG A+ + + + V+ G + ++ Sbjct: 129 VVGELRAGREPGQALLAALRERPAGADPSATPTSGGRLGDAEAAVLAAARFGGDVPAALR 188 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + L+ +S + V G L+ L L LR+ + + +++A A ++ Sbjct: 189 QAAEAPGLEGLSGMAACWRVAVDGGAGLATGLERLEAALREDRRRREELRAHLAGAWSTV 248 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 ++ LP L + VL++ P G L V G+ ++ Sbjct: 249 VVLALLPCAGLGLGAALGAEPLRVLLHTPGGLTCLAVGVFLEAAGLYWACRIVR 302 >gi|31747577|gb|AAK35047.2|AF330137_1 type II protein secretion LspF [Legionella pneumophila 130b] gi|307610064|emb|CBW99601.1| type II secretory pathway protein LspF [Legionella pneumophila 130b] Length = 399 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 20/172 (11%), Positives = 46/172 (26%), Gaps = 7/172 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + + D + + AG+PV +++ + Q+ E + Sbjct: 48 QRAASSKGKVSAADLALLTRQLATLLAAGIPVEESLRGVSEQTEKDKVRELIIGVR---- 103 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 L + G L L L+ ++ + KVQ Sbjct: 104 SKVLEGYGLAQAMAQYPNAFPELYRATVGSGEQTGRLDVVLEKLADYTEKQQQTRQKVQQ 163 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + + ++ + L+ F P ++V + + M Sbjct: 164 ALIYPLLMIIVSTAI---ICFLLTFVVPKIIDVFTESGQTLPPMTQLLINMS 212 >gi|319791197|ref|YP_004152837.1| type II secretion system f domain [Variovorax paradoxus EPS] gi|315593660|gb|ADU34726.1| Type II secretion system F domain [Variovorax paradoxus EPS] Length = 296 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 60/136 (44%), Gaps = 1/136 (0%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESIS 70 L P LD+I +AGL ++ A+A V + + EF R++ G S ++++ Sbjct: 149 ILRTLPGYLDMITLCCQAGLSLTGAIAQAVQKGPGGALGQEFDRMMREMRTGASRMDALN 208 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + + + + ++ LG +L++ L+ +S R + A+ A+ K Sbjct: 209 ALADRLDNKHIKSLVSNLTQAESLGASLADTLSAISDQRRTERFQMAEKLAMEAPVKMIG 268 Query: 131 WIIGSLPFCVSTLVYF 146 ++ + +++F Sbjct: 269 PLVIFIFPVTFIIIFF 284 >gi|297572242|ref|YP_003698016.1| hypothetical protein Arch_1715 [Arcanobacterium haemolyticum DSM 20595] gi|296932589|gb|ADH93397.1| hypothetical protein Arch_1715 [Arcanobacterium haemolyticum DSM 20595] Length = 223 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 21/176 (11%), Positives = 51/176 (28%), Gaps = 3/176 (1%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESI 69 K D + + +R+G V A + + +T L Sbjct: 38 KVSLDIGMLMAEVATRLRSGASVESAWERSLAPLGGIGGRIGADGIPQTLRTIWELGWWE 97 Query: 70 SRMVRYMP--LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + R + V + + G +++ L + + D + + Sbjct: 98 RKKRRISKGAHAAIPSAFVVCRMSAGTGAPVADVLDTCASGITDAGEAASARDIALAGPQ 157 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 SA+++ +LP + + G +L + + GI + ++ Sbjct: 158 TSAFMLAALPGVGIGFGTMLGANPLGFFFSSIIGAGVLILGLSAEFAGIWWVWRLV 213 >gi|158320668|ref|YP_001513175.1| type II secretion system protein [Alkaliphilus oremlandii OhILAs] gi|158140867|gb|ABW19179.1| type II secretion system protein [Alkaliphilus oremlandii OhILAs] Length = 400 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 12/140 (8%), Positives = 39/140 (27%), Gaps = 4/140 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D + AG+ + + ++ Q+ + + + Sbjct: 61 KDLAVFCRQFYTMLNAGIGIVKCMEILEKQTENKSLIKALETLGENVQKG----FALSES 116 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + ++ GNL + ++ ++ K+++ M + + Sbjct: 117 MKKHTKVFPPLLINMVEAGEVSGNLDTIMERMAIHFEKENKLENKIKSAFMYPAVLSVVT 176 Query: 134 GSLPFCVSTLVYFTSPGYMN 153 ++ + V T G Sbjct: 177 VAVVIFMLVGVMPTFVGMFE 196 Score = 45.9 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 41/131 (31%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLSESISRMVRYMP 77 + + +G+P+ A+ V+ + V + V G+ LS++I Sbjct: 269 FTRTLSTLMDSGIPLLQAMDVVSRVVGNTVVLDKLTVASENVRKGIPLSKAI------HD 322 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + + G L + L + + + ME + + Sbjct: 323 MKVFPPMVDSMIKIGEESGTLDDILNKTADFYDEEVETALQRMTTLMEPILIVVMALLIG 382 Query: 138 FCVSTLVYFTS 148 F V +V Sbjct: 383 FIVIAMVLPLF 393 >gi|327325750|gb|EGE67545.1| membrane spanning protein [Propionibacterium acnes HL096PA2] gi|328760172|gb|EGF73747.1| membrane spanning protein [Propionibacterium acnes HL099PA1] Length = 288 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 61/169 (36%), Gaps = 1/169 (0%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ++ + + + G + AV + ++ + +++ + E+ R Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + E +++ + S L ++ ++ R + +V+A + + S Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I + + + ++ L P G +L+ VA +I ++ M Sbjct: 224 QITLVTIAMFGGLLVIGRSFLAPL-ATPPGQVLVAVAVVMYVIALVQMY 271 >gi|305680235|ref|ZP_07403043.1| type II secretion system F domain protein [Corynebacterium matruchotii ATCC 14266] gi|305659766|gb|EFM49265.1| type II secretion system F domain protein [Corynebacterium matruchotii ATCC 14266] Length = 290 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 59/168 (35%), Gaps = 5/168 (2%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 L +IV ++AG + A+ + + +R E G S + Sbjct: 99 ATMLTLIVGELQAGATMGAALTACLPTLTEPELRREITVAARRCATGGS----AGAELEQ 154 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P+ +S + G L+ L N+ + + +++ +A A A+A ++ Sbjct: 155 SPILALSLMGHAWRIAETNGMALAGVLDNIRHRIDHQNRHESRTKAALQGANATAIVLAL 214 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 LP + + L + G ++L + GI+ +I Sbjct: 215 LPLLGMVMGHAIGVNVPAFLTSGGVGGLILIAGVSAECAGILWSDHII 262 >gi|90023218|ref|YP_529045.1| TonB-dependent siderophore receptor [Saccharophagus degradans 2-40] gi|89952818|gb|ABD82833.1| General secretion pathway protein F [Saccharophagus degradans 2-40] Length = 411 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 57/175 (32%), Gaps = 8/175 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72 D + V++GLP+ + + QS PV +V G+SL ++++ + Sbjct: 71 RDVSLVTRQLASLVQSGLPLDEVLQSTAKQSRKPVAKSVLLQVRARVLEGISLHQAMAEV 130 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R + + G L L L+ + + K+Q + + Sbjct: 131 PR-----VFDNLYRAMVRAGESSGFLGPVLEQLAEYTERSQETRQKLQMAMVYPVVMLVV 185 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI--GIMVMRLMINF 185 + + V ++ G + VA + ++ GI + + Sbjct: 186 SVCVVTVLMVKVVPQLTQLFERGKHELPGITKVLVATSNFMVDYGIFLFAGVTAI 240 Score = 35.1 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 40/128 (31%), Gaps = 7/128 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +G+P+ +A+ + S+ +V G SLS ++ + + Sbjct: 283 LGLLAHSGVPLLEALRIATQVLSNREMKLASEQVCIAVQEGGSLSRALDQA------KVF 336 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 ++ + G L E L +R ++ + G + F V Sbjct: 337 PPLLVQMAASGESNGKLDEQLLYAARNQERELEFSINTAMGLLQPAIVLLLAGIVIFIVM 396 Query: 142 TLVYFTSP 149 ++ Sbjct: 397 AILLPIFA 404 >gi|254479956|ref|ZP_05093204.1| general secretion pathway protein F [marine gamma proteobacterium HTCC2148] gi|214039518|gb|EEB80177.1| general secretion pathway protein F [marine gamma proteobacterium HTCC2148] Length = 406 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 57/175 (32%), Gaps = 14/175 (8%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMV 73 D + V + LP+ +A+ QS +V G +L+ +++ Sbjct: 68 DLAMLTRQLSTLVLSSLPLDEALQAAAQQSRSSRIKGMLLQVRSRVSEGYTLAYAMAEFP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G+L L L+ R+ K++ + ++ Sbjct: 128 L-----VFNEMYRAMVAAGEHSGHLGPVLEQLADYTEQRQYTSQKLKMAMIYPF---ILV 179 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-----IGIMVMRLMI 183 G V L+ F P + + + R LL A GI ++ +I Sbjct: 180 GVAIAVVVALMIFVVPELIGIFAHSSRELPLLTRALIVSSDFFREWGIWLLLGII 234 Score = 39.3 bits (90), Expect = 0.22, Method: Composition-based stats. Identities = 19/131 (14%), Positives = 43/131 (32%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET-QHLGLSLSESISRMVRYMP 77 + + +G+P+ DA+ + ++ V E + + G SL+ ++ + R+ P Sbjct: 275 FASTLSILMASGVPLLDALRIAGQVLTNLVLREDSKAVAELVQEGSSLNRALQQSGRFPP 334 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L LA + M E + G + Sbjct: 335 M------MVHMVASGEASGELETMLARSADNQERELEMTLGTMMALFEPLMVVVMGGMVL 388 Query: 138 FCVSTLVYFTS 148 V ++ Sbjct: 389 MIVLAILLPIF 399 >gi|313901182|ref|ZP_07834670.1| type II secretion system protein F domain protein [Clostridium sp. HGF2] gi|312954140|gb|EFR35820.1| type II secretion system protein F domain protein [Clostridium sp. HGF2] Length = 398 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 15/173 (8%), Positives = 60/173 (34%), Gaps = 6/173 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + + +G+ + A++++V +S ++S + + G +LS ++ Sbjct: 58 KELSDFSRQLGAMIGSGVSLIRAMSILVQRESKPKIKSIYTDMYRKLQQGQTLSMAMESE 117 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P + + G + + ++ ++K K++ + + Sbjct: 118 GKAFP-----ELMINMYRTGESSGQMEKVAMTMALQYEKDDHIKRKIRNAMIYPIILLCV 172 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + V T + + + ++ G++ + ++ ++ Sbjct: 173 TVFVIIVVFTWIIPSFSSVFEGMELPLITKIVNGLSQIMIHYWYWLLIGILCI 225 >gi|313824430|gb|EFS62144.1| type II secretion system F domain protein [Propionibacterium acnes HL036PA2] Length = 147 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 51/140 (36%), Gaps = 4/140 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 P AL ++ ++ AGLP+ AV + P + RR+ + G+ S + + + Sbjct: 7 AQLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVPDSRAWNDLA 66 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK-ASAWI 132 ++ + +S G +SE L+ + L+ K + +A + Sbjct: 67 ---SVEVWRDPAQDVSRAVDSGEGISELLSAHAAQLQVAAAEKTEKKARKAGVDAIGPLV 123 Query: 133 IGSLPFCVSTLVYFTSPGYM 152 LP V G + Sbjct: 124 CCHLPAFSLVGVVPIIAGMV 143 >gi|309776322|ref|ZP_07671310.1| putative bacterial type II secretion system protein F domain protein [Erysipelotrichaceae bacterium 3_1_53] gi|308915918|gb|EFP61670.1| putative bacterial type II secretion system protein F domain protein [Erysipelotrichaceae bacterium 3_1_53] Length = 343 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 58/163 (35%), Gaps = 10/163 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 ++ + + + G+ + + + +I +++P E L L + S Sbjct: 8 SEEMFDFCTQMSMILAGGMSIEEGLEIISEDTANPHMKE-----ACSKLLEKLPQCGSFH 62 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 ++ + ++ G+L + L+ ++K ++ + Sbjct: 63 SALKGEPYFDTYAKKMVEIGEISGHLDSVMKELALYYERNSDLKQSLKEALTYPS---IL 119 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + + V +V+ P + VL+N G L G AA+ M G Sbjct: 120 LLMMWAVVGIIVWKVLPIFEKVLMN--MGVPLQGSAASMMRFG 160 >gi|302864764|ref|YP_003833401.1| Type II secretion system F domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315501058|ref|YP_004079945.1| type ii secretion system f domain protein [Micromonospora sp. L5] gi|302567623|gb|ADL43825.1| Type II secretion system F domain [Micromonospora aurantiaca ATCC 27029] gi|315407677|gb|ADU05794.1| Type II secretion system F domain protein [Micromonospora sp. L5] Length = 299 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/180 (9%), Positives = 56/180 (31%), Gaps = 3/180 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++R ++ + G + A+ + + + ++ E R + G Sbjct: 102 RAEQRAIARVEAVGEWTRRLKDISATGQGLQQAIIGTIATAPEEIQEEVRTLAARLQAGW 161 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQS-QLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++ + + + G L + L +++ + +V+A Sbjct: 162 LARSALLAFADEIADPVADQVVAALILHLTDRGERLGDVLGSIATAASAEVATRREVEAK 221 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + + + + + Y+ G +++ V A + ++ +R M Sbjct: 222 RTQPRFAVRFLTGMTLATLAY-GLVNSDYIRP-YGTLTGQLVMAVLGAAFVGLLVWVRSM 279 >gi|262277340|ref|ZP_06055133.1| type II Secretion System PilC [alpha proteobacterium HIMB114] gi|262224443|gb|EEY74902.1| type II Secretion System PilC [alpha proteobacterium HIMB114] Length = 427 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 19/155 (12%), Positives = 55/155 (35%), Gaps = 6/155 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRM 72 + + ++AGLP+ +++ +I Q+ +++ + G++L+++ + Sbjct: 84 KELLQFTKKVSTMIKAGLPILESIMMIRDQTVHMKMKMTAHNIVKDLNSGMNLTDAFKKH 143 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G L E L L +L + +K+ +++ + Sbjct: 144 PKI-----FDNIYINMISAGEASGKLDEFLIKLVELLEKNQKIKSGIKSALFYPIMLLTV 198 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 ++ + V + G L+ V Sbjct: 199 ATTITIFMLWKVVPVFEKMYANMGVKLPGPTLIIV 233 >gi|291612967|ref|YP_003523124.1| general secretion pathway protein F [Sideroxydans lithotrophicus ES-1] gi|291583079|gb|ADE10737.1| general secretion pathway protein F [Sideroxydans lithotrophicus ES-1] Length = 407 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 19/171 (11%), Positives = 48/171 (28%), Gaps = 4/171 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R L + L + AGLP+ A+AV++ Q +P + + L+ Sbjct: 62 RKRISLSEVSLMLRQFATLLEAGLPLEQALAVLIEQGDNPAMRQVLATMR----SEVLAG 117 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + + + G L+ + L+ ++ ++ K+ + Sbjct: 118 NTLARAMEKHRDTFPEIHRALINAGEESGELATVMDRLATYSEGQQALQQKIGLAMIYPA 177 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + + V + + +L + Sbjct: 178 IVVTVAVLVVGGLLIFVVPPVVEVFQQTHQALPFLTRALIGLSDLLSATWL 228 >gi|188586347|ref|YP_001917892.1| type II secretion system protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351034|gb|ACB85304.1| type II secretion system protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 403 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 59/189 (31%), Gaps = 28/189 (14%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 + VR G+PV +++ + Q + + VI++ + G SL E+ S Sbjct: 64 SKELMLFTSQFSTMVRCGIPVIESLDLQTQQLGNKNLTRGLTIVIKSLNSGKSLREAFSD 123 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P T + + G L E L L+ + K+++ Sbjct: 124 ASETFPW-----LITEMVGAGEESGRLDEILDRLALHYEQEYTLSQKLKSAISYPIL--- 175 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL-------------------INDPRGHMLLGVAAAFM 172 +I V L+ P ++N+ ++ +A M Sbjct: 176 LIILAMVVVYILLTVIFPQFINLFEAQGAELPFITRMIFDSGIWMTENFSLIFVLAILLM 235 Query: 173 LIGIMVMRL 181 + + + R Sbjct: 236 FLCVYIFRR 244 >gi|317968405|ref|ZP_07969795.1| type IV pilus assembly protein PilC [Synechococcus sp. CB0205] Length = 413 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 22/143 (15%), Positives = 51/143 (35%), Gaps = 6/143 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + V AG+P+ ++ ++ Q + V + G SL ++ R Sbjct: 78 FANKLAALVDAGVPIVRSLDLMARQQRMPLFKRALTAVSTDVNQGGSLGAALRSWPR--- 134 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + GG L E+L L+++L ++ +++ A I + Sbjct: 135 --VFDKLTIAMVEAGEAGGVLDESLRRLAKLLEGNARLQNQIKGAMGYPVAVLAIAILVF 192 Query: 138 FCVSTLVYFTSPGYMNVLINDPR 160 ++ + T G L + Sbjct: 193 LGMTIFLIPTFAGIFEDLGAELP 215 Score = 39.3 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 14/134 (10%), Positives = 41/134 (30%), Gaps = 7/134 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 RAG+P+ ++ ++ + + + + G+ LS ++ R Sbjct: 282 FCRTFSSLTRAGVPILLSLEIVQETAGNAVIADAIVGSRQDVQEGIPLSVALER------ 335 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + + G + L+ ++ D K +E + G + Sbjct: 336 KKVFPELALSMLAIGEETGQMDAMLSKVADFYEDEVEAAVKALTSMLEPAMIVMVGGIVG 395 Query: 138 FCVSTLVYFTSPGY 151 + + + Sbjct: 396 SILLAMYLPMFSIF 409 >gi|262192440|ref|ZP_06050592.1| general secretion pathway protein F [Vibrio cholerae CT 5369-93] gi|262031704|gb|EEY50290.1| general secretion pathway protein F [Vibrio cholerae CT 5369-93] Length = 393 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 24/174 (13%), Positives = 62/174 (35%), Gaps = 10/174 (5%) Query: 3 HLIKKR---TAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIE 57 L ++R + + L + +G+P+ + ++ + + +R+ Sbjct: 41 MLAEQRSSGVKQLSREVLITTLRELATLRESGMPLDQCINSLLENSADKQMVLVLKRLHS 100 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G SLSE+I+ P + + + + G L AL ++S + + + + Sbjct: 101 DIESGSSLSEAIAAQPDSFPY-----YVSSMLRLGEASGQLGNALFSISERIEREEKLVS 155 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 +V++ + + F + V + ++ LL ++A Sbjct: 156 EVKSALTYPAFLLVVCVATIFFMFLYVIPNFETMVQEGVDAGALGNLLAISAFL 209 >gi|87123331|ref|ZP_01079182.1| pili biogenesis protein [Synechococcus sp. RS9917] gi|86169051|gb|EAQ70307.1| pili biogenesis protein [Synechococcus sp. RS9917] Length = 418 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 62/177 (35%), Gaps = 19/177 (10%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + V AG+P+ ++ ++ Q + ++ + G ++ ++ + + Sbjct: 83 FASKLAALVDAGVPIVRSLDLMARQQRLPMFKRALLQISLEVNQGTAMGAAMRQWPK--- 139 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 S + + GG L E+L L+++L D ++ +++ A I + Sbjct: 140 --VFDPLSIAMVEAGEAGGVLDESLKRLAKLLEDNARLQNQIKGALGYPVAVLVIAILVF 197 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGV-------------AAAFMLIGIMVMRL 181 ++ + T G L + L V A ML+ + ++ Sbjct: 198 LGMTIFLIPTFAGIFKDLGAELPLFTQLMVDLSELLRSPLSLLLAGVMLMALWMLSR 254 Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 13/135 (9%), Positives = 38/135 (28%), Gaps = 5/135 (3%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 I RAG+P+ ++ + + + + S+ L + Sbjct: 285 AQFCRIFSSLTRAGVPILMSLEISSDTAGNSIISDAILASRGLVQEGVL-----LSAALI 339 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + + + + G + + L+ ++ D K +E + G + Sbjct: 340 RQNVLPEMALSMLAIGEETGEMDQMLSKVADFYEDEVTASVKALTSMLEPAMIVVVGGIV 399 Query: 137 PFCVSTLVYFTSPGY 151 + + + Sbjct: 400 GSILLAMYLPMFTVF 414 >gi|171320623|ref|ZP_02909643.1| type II secretion system protein [Burkholderia ambifaria MEX-5] gi|171094136|gb|EDT39223.1| type II secretion system protein [Burkholderia ambifaria MEX-5] Length = 314 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 3/131 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRM 72 FP+ALD++V AG ++ V + + P+ E + L ++SE+++ Sbjct: 170 FPDALDLLVICTMAGNSLASGVRRVARELERICPPLADELTVCADELTLSGNVSEALAHF 229 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + +T ++ + G +++AL LSR R + + + +A + K + + Sbjct: 230 ALRVNFSSARSLATTLTQSQRFGTPITQALRTLSRSERTEQVVALEEKAAKLAPKITVPM 289 Query: 133 IGSLPFCVSTL 143 + + V + Sbjct: 290 MLFILPTVGLI 300 >gi|156975735|ref|YP_001446642.1| hypothetical protein VIBHAR_03470 [Vibrio harveyi ATCC BAA-1116] gi|156527329|gb|ABU72415.1| hypothetical protein VIBHAR_03470 [Vibrio harveyi ATCC BAA-1116] Length = 407 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 20/182 (10%), Positives = 53/182 (29%), Gaps = 17/182 (9%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D I + G+P+ A+ ++ ++S V G +S+++ Sbjct: 67 KDITIFTRQIATMLMTGVPIVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTA 126 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + GNLS+ L+ + ++AKV + + Sbjct: 127 STHFDPLYTD-----LIATGEQSGNLSQVFERLATYREKSEQLRAKVIKALIYPAMVVLV 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV-----------AAAFMLIGIMVMRL 181 + + + T V D + + + +++ Sbjct: 182 ALGVSYLMLTRVIPEFEKMFTGFGADLPAFTQMVLNLSAWTQNWGPFIGLSFVSLLISGK 241 Query: 182 MI 183 ++ Sbjct: 242 IM 243 Score = 37.4 bits (85), Expect = 0.83, Method: Composition-based stats. Identities = 14/136 (10%), Positives = 37/136 (27%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72 + S AG+P+ A+ S + V G+ + ++ Sbjct: 271 AAIAKFSRTLATSFSAGIPILTALKTTSKTSGNMHYQLAIEEVYRDTAAGMPMYIAMRN- 329 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G L + L ++ I + + +E ++ Sbjct: 330 -----CNVFPELVLQMVMIGEESGRLDDMLNKIAAIYEFEVDNTVDNLSKILEPLIIVFL 384 Query: 133 IGSLPFCVSTLVYFTS 148 + V+ + Sbjct: 385 GVVVGGLVTAMYLPIF 400 >gi|115351460|ref|YP_773299.1| type II secretion system protein [Burkholderia ambifaria AMMD] gi|115281448|gb|ABI86965.1| type II secretion system protein [Burkholderia ambifaria AMMD] Length = 337 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 57/147 (38%), Gaps = 5/147 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSES 68 D+ P +D++ GL + ++ V+ + SE G + +S Sbjct: 185 VTDELPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMMPVLSSEMEIAQRQFAAGRTREQS 244 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + R+ +++ ++ + GG + E L LR+ + + + + K Sbjct: 245 LQRLSSGFENEDLRAIVRLLIQVDKHGGAVQEPLKQFGERLREARRAMLRERIGRLTVKM 304 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +I +L + L+ PG ++VL Sbjct: 305 TGVMIVTLLPAL--LIVTAGPGMISVL 329 >gi|294012340|ref|YP_003545800.1| type II secretory pathway component PulF [Sphingobium japonicum UT26S] gi|292675670|dbj|BAI97188.1| type II secretory pathway component PulF [Sphingobium japonicum UT26S] Length = 405 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/170 (10%), Positives = 47/170 (27%), Gaps = 5/170 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + ++ P+ +++ I QS R I + L Sbjct: 66 KELTLFTRQLSTLIQV-SPLEESLRTIGRQSE----QAHVRAIVGKVHSGVLEGRRLADA 120 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G+L + LS ++ + +++KV A Sbjct: 121 LGAEPRSFPPLYRAMISAGESSGSLPTIMERLSDLMERQAVIRSKVLTAIAYPSVLAAFA 180 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + V + + + + + L G + ++ Sbjct: 181 VCVVAALMIFVVPKVVEQFDTVGQQLPLLTRMVMGISAFLAGYWWLLAIL 230 >gi|289627841|ref|ZP_06460795.1| general secretion pathway protein F [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 337 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + AG P+ ++ +++ Q ++ R+ E G LS ++ Sbjct: 62 AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEE 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 S + + GG L L LS L + ++ +V + ++ Sbjct: 122 GTQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + ++ L+ + P ++ + + G + + + +G + Sbjct: 174 VIGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGQFL 217 >gi|297193033|ref|ZP_06910431.1| integral membrane protein [Streptomyces pristinaespiralis ATCC 25486] gi|197719837|gb|EDY63745.1| integral membrane protein [Streptomyces pristinaespiralis ATCC 25486] Length = 262 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 49/150 (32%), Gaps = 4/150 (2%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 + P A D++ + AG +A + PV + R LG S + Sbjct: 114 RKEAARQLPLAADLMAACISAGASPREAAEAVGESLGGPVGAGLARTAAQLRLGAEPSPA 173 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + ++ + G ++ ++ L+ LR + + + Sbjct: 174 WGCFGEIPGAEPLARC---LERADSAGAPAADPVSRLAGRLRAERARAVAGRGRRAQVLI 230 Query: 129 SAWI-IGSLPFCVSTLVYFTSPGYMNVLIN 157 +A + + LP ++ V G L++ Sbjct: 231 TAPVGLCFLPAFLAVGVAPVVIGLAGGLLH 260 >gi|323964799|gb|EGB60266.1| type II secretion system protein F [Escherichia coli M863] gi|327255083|gb|EGE66686.1| bacterial type II secretion system protein F domain protein [Escherichia coli STEC_7v] Length = 400 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 52/154 (33%), Gaps = 9/154 (5%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ I+ Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLADKVKSALRYPI---IILAM 172 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 V +++F P + + L Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGI 206 >gi|20091916|ref|NP_617991.1| hypothetical protein MA3098 [Methanosarcina acetivorans C2A] gi|19917114|gb|AAM06471.1| hypothetical protein (multi-domain) [Methanosarcina acetivorans C2A] Length = 453 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 65/168 (38%), Gaps = 5/168 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 + K++ K F + L + +R G+ V + ++ E + LG Sbjct: 136 MQKRKLRKQEVAFSDFLYKLSELMRGGIDPVKGVIALSRGELGAIKKEVQDCASFLVLGH 195 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 SL S++R+ + + V+ + +I + GGN+++ + S +R +++ + + Sbjct: 196 SLEYSMNRLNEAIGSKLVAKYINIIVEAAHTGGNVADLVFRTSEDMRAVISLEREKENNL 255 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 ++ L + ++ + + LI G +LG Sbjct: 256 ----KQYAVVFYLAQGIMVMLVYILSTSLLPLIQ-GTGMAMLGGQGVS 298 >gi|313837838|gb|EFS75552.1| type II secretion system F domain protein [Propionibacterium acnes HL037PA2] Length = 283 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 19/169 (11%), Positives = 60/169 (35%), Gaps = 1/169 (0%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ++ + + + G + AV + ++ + +++ + E+ R Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGAVDQLVSRLDGRMEPREAFQR 163 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + E +++ + S L ++ ++ R + +V+A + + + Sbjct: 164 MADELDSSEADAVLASLALAATHPRGASVTLKAIAGTIQQRLKVLRQVEAERSKPRNAVR 223 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I + + ++ ++ L P G +L+ A + ++ M Sbjct: 224 QITLVTIAMFGVLLVVGRSFLAPL-ATPPGQVLVTAAVVMYVTALVQMY 271 >gi|297538473|ref|YP_003674242.1| Type II secretion system F domain-containing protein [Methylotenera sp. 301] gi|297257820|gb|ADI29665.1| Type II secretion system F domain protein [Methylotenera sp. 301] Length = 408 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 22/160 (13%), Positives = 53/160 (33%), Gaps = 6/160 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 I ++AG+P+ +A+ + +++ S + E+ G LS ++S+ + Sbjct: 71 FSRQIYTLLKAGIPIMNALNGLQASTNNQTFASVIGNIRESLGSGRELSSALSQHPK--- 127 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 S F + + G L L L + M ++++ +G Sbjct: 128 --VFSSFYINMVRVGETTGMLDTVFLRLFDHLEFERFMHDQIKSALRYPTFVVIAMGIAI 185 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 V+ V + + +A + ++ Sbjct: 186 VVVNLFVIPAFAKVFQSFGAELPLMTRILLAFSNFMVAAW 225 Score = 37.4 bits (85), Expect = 0.95, Method: Composition-based stats. Identities = 8/132 (6%), Positives = 45/132 (34%), Gaps = 7/132 (5%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + ++G+P++ + ++ + + + + + + S + Sbjct: 271 MSRFARSFALASKSGVPITSGLKLVAQTADNDY-----IASKIEQMREGVERGESILRTA 325 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + G L + + ++ + +++++ +++ L + + + Sbjct: 326 TNSGVFNPIVLQMIAVGEESGALDDLMQEVADMY--QRDVEYEIKTLGAQIEPILIVFLG 383 Query: 136 LPFCVSTLVYFT 147 + + L F Sbjct: 384 VMVLILALGIFL 395 >gi|262374059|ref|ZP_06067336.1| general secretion pathway protein F [Acinetobacter junii SH205] gi|262311070|gb|EEY92157.1| general secretion pathway protein F [Acinetobacter junii SH205] Length = 401 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 60/184 (32%), Gaps = 22/184 (11%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V AG+P+ +A+ + QS V++ V G SL++++ + Sbjct: 65 DLALMTRQLSVLVAAGIPLEEALRAVSKQSEKSHVQNLLISVRSKVLEGHSLAQAMQQSG 124 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + G+L L LS +R M+ K+Q + + Sbjct: 125 R------FPELYIATVAAGERSGHLDLILDQLSDYTENRFAMQKKIQGAMIYPIILMLMS 178 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA------------AAFMLIGIMVMRL 181 + V L+ + P + + V ++IG + + L Sbjct: 179 FGI---VMGLMTYVVPEIVKTFEQSKEALPWITVLLMKISAFIRQTWIGMLIIGFIALIL 235 Query: 182 MINF 185 F Sbjct: 236 FTRF 239 Score = 38.2 bits (87), Expect = 0.56, Method: Composition-based stats. Identities = 13/129 (10%), Positives = 35/129 (27%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + R+G+P+ +A+ + S++ V + V + + + Sbjct: 271 FASTLSILTRSGVPLVEALRISAEVSNNWVIRDSIEVAMERVTEGG-----NLATQLERC 325 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L L S + +E ++ + Sbjct: 326 GYFPPMMVQMIRSGEASGELDRMLDRASTMQDREVTTFISTLLALLEPLMLVFMAAIVLV 385 Query: 139 CVSTLVYFT 147 V ++ Sbjct: 386 IVIAVMLPI 394 >gi|328949685|ref|YP_004367020.1| Type II secretion system F domain protein [Marinithermus hydrothermalis DSM 14884] gi|328450009|gb|AEB10910.1| Type II secretion system F domain protein [Marinithermus hydrothermalis DSM 14884] Length = 399 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 6/160 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 V AG+P++ A+ + +S +R R V E G SL+++++ Sbjct: 58 ALALYTSQFATLVAAGVPLTQALVTLAQESPSPALRQATREVRERIEAGESLADAMAHHP 117 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 P + + GG L LA L+ L + + K++ M ++ Sbjct: 118 EVFPP-----LMRHLIAAGEAGGALEVTLARLAEYLERAEELNQKIRTALMYPGFVLAVV 172 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 G + +V + +AA+ Sbjct: 173 GVALAVLLLVVIPVFARLYSSAGAALPWPTQALLAASAFA 212 Score = 38.6 bits (88), Expect = 0.42, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 41/129 (31%), Gaps = 6/129 (4%) Query: 21 DIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 +GLP++ A+ + + V+++ G S S +++R Sbjct: 267 RTFATLYASGLPITQALEATRDLAGNAFIAHAVDEVLQSVVRGESFSAALARHPE----- 321 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 T +S + G L L +R L + K + S+E + + + Sbjct: 322 VFLPVFTRMSAVGEASGGLDAMLDQAARHLEREVDYAVKRLSASIEPILTVLLGVGILLV 381 Query: 140 VSTLVYFTS 148 L Sbjct: 382 ALALYLPLF 390 >gi|223365710|pdb|2VMB|A Chain A, The Three-Dimensional Structure Of The Cytoplasmic Domains Of Epsf From The Type 2 Secretion System Of Vibrio Cholerae gi|223365711|pdb|2VMB|B Chain B, The Three-Dimensional Structure Of The Cytoplasmic Domains Of Epsf From The Type 2 Secretion System Of Vibrio Cholerae Length = 123 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 6/110 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + V++G+P+ + + + QS +R+ V G +LS+S+ Sbjct: 13 DLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYP 72 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + + G+L L L+ +R+ M++K+Q S Sbjct: 73 -----HVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAS 117 >gi|152967730|ref|YP_001363514.1| type II secretion system protein [Kineococcus radiotolerans SRS30216] gi|151362247|gb|ABS05250.1| type II secretion system protein [Kineococcus radiotolerans SRS30216] Length = 295 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 50/136 (36%), Gaps = 1/136 (0%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 + D P+ +++ SV AG V A+ + S P+ ++ R + G L +++ Sbjct: 152 EIAADLPDVAELLALSVGAGENVVAALERVS-AGSGPLCAQLRHSLGRVRTGTPLLDALV 210 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + + I+V + G L+E L + R+ + + E + Sbjct: 211 DLAGRWGVAPFTRLVDGIAVAVESGSPLAEVLRAQAADAREAERRRLLETGGRREVQMMV 270 Query: 131 WIIGSLPFCVSTLVYF 146 ++ + F Sbjct: 271 PVVFGVLPVTVVFAVF 286 >gi|318042985|ref|ZP_07974941.1| pili biogenesis protein [Synechococcus sp. CB0101] Length = 430 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 22/143 (15%), Positives = 52/143 (36%), Gaps = 6/143 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + V AG+P+ ++ ++ Q + V + G SL ++ R + Sbjct: 95 FANKLAALVDAGVPIVRSLDLMARQQRMPLFKRALTAVSTDVNQGGSLGAALRRWPK--- 151 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + GG L E+L L+++L ++ +++ A I + Sbjct: 152 --VFDKLTIAMVEAGEAGGVLDESLRRLAKLLEGNAKLQNQIKGAMGYPVAVLVIAVLVF 209 Query: 138 FCVSTLVYFTSPGYMNVLINDPR 160 ++ + T G L + Sbjct: 210 LGMTIFLIPTFAGIFEDLGAELP 232 Score = 42.8 bits (99), Expect = 0.022, Method: Composition-based stats. Identities = 17/159 (10%), Positives = 45/159 (28%), Gaps = 19/159 (11%) Query: 6 KKRTAKFLDDFPNA------------LDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEF 52 ++R L P RAG+P+ ++ ++ + + + Sbjct: 274 RRRVDGLLLQLPLFGDLIQKTATAKFCRTFSSLTRAGVPILLSLEIVQETAGNAVIADAI 333 Query: 53 RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112 + G+ LS ++ R Q + + + G + L+ ++ D Sbjct: 334 VGSRQDVQEGIPLSVALGR------KQVFPELALSMLAIGEETGQMDTMLSKVADFYEDE 387 Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 K +E + + + + + Sbjct: 388 VEAAVKALTSMLEPAMIVIVGVIVGSILLAMYLPMFSIF 426 >gi|299771749|ref|YP_003733775.1| general secretion pathway protein F [Acinetobacter sp. DR1] gi|298701837|gb|ADI92402.1| general secretion pathway protein F [Acinetobacter sp. DR1] Length = 401 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 60/179 (33%), Gaps = 13/179 (7%) Query: 9 TAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66 KF D + V A +P+ +A+ + QS V++ V G SL+ Sbjct: 58 QKKFSAYDLALMTRQLSVLVAAAIPLEEALRAVSRQSEKPHVQNLLLSVRSRVLEGHSLA 117 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + + + R+ + G+L L LS +R M+ KVQ + Sbjct: 118 QGMQQSGRFPD------LYIATVAAGERSGHLDLILDQLSDYTENRFAMQKKVQGAMIYP 171 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA--AFMLIGIMVMRLMI 183 + + V L+ + P + + VA A I + ++I Sbjct: 172 IILMLMSFGI---VMGLMTYVVPEIVKTFDQSKDALPWITVALMKASDFIRHAWVFIII 227 >gi|269217518|ref|ZP_06161372.1| type II secretion system protein [Actinomyces sp. oral taxon 848 str. F0332] gi|269212453|gb|EEZ78793.1| type II secretion system protein [Actinomyces sp. oral taxon 848 str. F0332] Length = 186 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 51/161 (31%), Gaps = 1/161 (0%) Query: 24 VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSF 83 +RAG A ++ V + S R V Sbjct: 21 ATRMRAGASTEKAWGQTCARAGFEDGDAVDDVGV-PAALRRMWASRGRKSADDVRLGVPP 79 Query: 84 FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143 V + G ++ L + + D A +A KASA ++ LP L Sbjct: 80 AVAVCRLTRATGAPAADVLDACAAGITDAAESAAARRAALAGPKASARMLAWLPLLGLFL 139 Query: 144 VYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 ++ L++ G LL + AF +GI +R ++ Sbjct: 140 GSLMGTDTLDFLLSAGLGRTLLALGLAFEALGIFWVRRLVR 180 >gi|237798377|ref|ZP_04586838.1| type II secretion system protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021229|gb|EGI01286.1| type II secretion system protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 295 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 69/157 (43%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + + K+R + + + + ++ +G+ V A+ V+ + + E R V+ Sbjct: 134 LAAVAKRRQKQIVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLA 193 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL L E + +M + + E+S +++ GG ++L L +++ DR+ + Sbjct: 194 RVDSGLELGEELRKMAALLDVDELSDTCIILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 253 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + AK S ++ L + ++ PG++ + Sbjct: 254 QEYISKLSAKMSMVMMVFLFPALLIVL--AGPGFIAI 288 >gi|170701756|ref|ZP_02892692.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] gi|170133339|gb|EDT01731.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] Length = 337 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 57/147 (38%), Gaps = 5/147 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSES 68 D+ P +D++ GL + ++ V+ + SE G + +S Sbjct: 185 VTDELPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMMPVLSSEMEIAQRQFAAGRTREQS 244 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + R+ +++ ++ + GG + E L LR+ + + + + K Sbjct: 245 LQRLSSGFENEDLRAIVRLLIQVDKHGGAVQEPLKQFGERLREARRAMLRERIGRLTVKM 304 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +I +L + L+ PG ++VL Sbjct: 305 TGVMIVTLLPAL--LIVTAGPGMISVL 329 >gi|300946549|ref|ZP_07160814.1| general secretion pathway protein F [Escherichia coli MS 116-1] gi|300954742|ref|ZP_07167175.1| general secretion pathway protein F [Escherichia coli MS 175-1] gi|300318293|gb|EFJ68077.1| general secretion pathway protein F [Escherichia coli MS 175-1] gi|300453795|gb|EFK17415.1| general secretion pathway protein F [Escherichia coli MS 116-1] Length = 398 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 27/198 (13%), Positives = 60/198 (30%), Gaps = 29/198 (14%) Query: 5 IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62 +K R + + + A LP+ +++AVI QSS+ + +V G Sbjct: 49 VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLGDVLNQVRSAILEG 108 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS+++ + + G L+ L L+ +R+ +++K+ Sbjct: 109 HPLSDALQHFPTL-----FDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQS 163 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP-------------------RGHM 163 + + V L+ P ++ G Sbjct: 164 LIYP---CMLTTVAIGVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRIGPT 220 Query: 164 LLGVAAAFMLIGIMVMRL 181 LL + + ++ Sbjct: 221 LLATVFIVAVGFWLWLKR 238 >gi|289643197|ref|ZP_06475324.1| Flp pilus assembly protein TadB-like protein [Frankia symbiont of Datisca glomerata] gi|289506968|gb|EFD27940.1| Flp pilus assembly protein TadB-like protein [Frankia symbiont of Datisca glomerata] Length = 376 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 36/104 (34%) Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + V G L+ L+ ++R + +V +AS ++ SLP Sbjct: 248 RQLAAAWRVSQHAGIPLAPLANRLAAVVRAERERDGEVATALAGPRASGRLVASLPVAGI 307 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 L + VL+ G + L V A L G+ + + Sbjct: 308 ALGVLLGVSPLTVLLGTRAGGLCLVVGLALDLAGLAWINRLTEV 351 >gi|172060499|ref|YP_001808151.1| type II secretion system protein [Burkholderia ambifaria MC40-6] gi|171993016|gb|ACB63935.1| type II secretion system protein [Burkholderia ambifaria MC40-6] Length = 330 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 59/149 (39%), Gaps = 5/149 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLS 66 +D+ P +D++ GL + ++ V+ + SE G + Sbjct: 177 QSVVDELPLFVDMLRLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEVGIAQRQFAAGRTRD 236 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ R+ +++ + ++ + GG + E L LR+ + + + + Sbjct: 237 QSMQRLSSGFDNEDLRAIARLVVQVDKHGGAVQEPLKQFGDRLRETRRAMLRERIGRLTV 296 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 K + ++ +L + L+ PG++ V+ Sbjct: 297 KMTGVMVLTLLPAL--LIVTAGPGFLAVM 323 >gi|254448218|ref|ZP_05061680.1| general secretion pathway protein F [gamma proteobacterium HTCC5015] gi|198262085|gb|EDY86368.1| general secretion pathway protein F [gamma proteobacterium HTCC5015] Length = 407 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 59/173 (34%), Gaps = 12/173 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + V++G P+ A+ + Q+ D V+S + G SL+++ S Sbjct: 68 DLTLVTRQLATLVKSGQPIEKALFSVSQQTEKDHVKSLLVAIRGKVLEGQSLAQAFSAYP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 P + G+L L L+ R M K+ M ++ Sbjct: 128 NVFP-----EIYRSTIASGEASGHLDTVLMRLADYAERRHEMSKKLFESLMYPI---VVV 179 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM---LIGIMVMRLMI 183 +S L+ + P +V + LL V + + G + +++ Sbjct: 180 VMSVLILSLLLVWVVPQITSVFASSDAELPLLTVMIIGLSDGVKGYWWLIILL 232 >gi|237807141|ref|YP_002891581.1| general secretion pathway protein F [Tolumonas auensis DSM 9187] gi|237499402|gb|ACQ91995.1| general secretion pathway protein F [Tolumonas auensis DSM 9187] Length = 406 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/173 (11%), Positives = 47/173 (27%), Gaps = 6/173 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + V A LP+ +A+ + Q+ + L Sbjct: 65 TAELALLTRQLATLVAAALPIEEALKAVAQQTE----KARLSTLVAAVRTKVLEGHSLAD 120 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G+L L L+ R+ MK K+ + + Sbjct: 121 GMSAFPSVFDQLYRAMVAAGEKSGHLEIVLNRLADYTEQRQQMKNKLLQAMIYPIILTLV 180 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML--IGIMVMRLMI 183 S+ + V + + + A+ ++ G+ + L+ Sbjct: 181 AISVISILLATVVPKVVEQFIHMKQELPFSTRFLMGASDLVRDYGLWFVLLIA 233 >gi|297570198|ref|YP_003691542.1| general secretion pathway protein F [Desulfurivibrio alkaliphilus AHT2] gi|296926113|gb|ADH86923.1| general secretion pathway protein F [Desulfurivibrio alkaliphilus AHT2] Length = 404 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/159 (11%), Positives = 44/159 (27%), Gaps = 4/159 (2%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D + VR+G+ + +A+ + Q+ P + L + Sbjct: 66 DLAVVTRQLATLVRSGIVLEEALGAVAEQAEKPRLKSVLMAVR----SRILEGYAADRAL 121 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + G+L L L+ R+ ++ KV + + Sbjct: 122 GEFPRVFPELYRATLAAGEQAGHLDVVLERLADYTEARQQLQQKVFLALLYPVLLTVVAF 181 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 ++ + V + + +A + L Sbjct: 182 AVISALLVYVVPQVVEVFAHIDQTLPALTVGLIAVSDFL 220 >gi|226226497|ref|YP_002760603.1| general secretion pathway protein F [Gemmatimonas aurantiaca T-27] gi|226089688|dbj|BAH38133.1| general secretion pathway protein F [Gemmatimonas aurantiaca T-27] Length = 434 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 59/175 (33%), Gaps = 12/175 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + + + AG+P+ A++ + R+ F R+ G SLS + + Sbjct: 99 ETLAALVRSMATLLAAGVPIDRALSHAASSENVHWRAPFVRIRNAVRRGESLSTACAAES 158 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + ++ G+L+ A L+ L ++A+V+ + Sbjct: 159 A------LPSIMAPTVAAAEATGSLASAFEGLAEYLERGAELRARVRGALTYPTL---LA 209 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGIMVMRLMINF 185 S + +V P + +L + L V + ++ + M+ Sbjct: 210 SSSAIAILVIVLVVVPRFAALLTDTGAPLPTSTKLLVGVSALVGQWWWLLTMVAV 264 >gi|182437112|ref|YP_001824831.1| hypothetical protein SGR_3319 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465628|dbj|BAG20148.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 307 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 59/174 (33%), Gaps = 12/174 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS------------DPVRSEFRRVIETQHLGLSLSESIS 70 +V +RAG A+ + + + V+ G + ++ Sbjct: 129 VVGELRAGREPGQALLAALRERPAGADPSATPTSGGRLGDAEAAVLAAARFGGDVPAALR 188 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + L+ +S + V G L+ L L LR+ + + +++A A ++ Sbjct: 189 QAAEAPGLEGLSGMAACWRVAVDGGAGLATGLERLEAALREDRRRREELRAHLAGAWSTV 248 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 ++ LP L + VL++ P G L V G+ ++ Sbjct: 249 VVLALLPCAGLGLGAALGAEPLRVLLHTPGGLACLAVGVFLEAAGLYWACRIVR 302 >gi|148272103|ref|YP_001221664.1| hypothetical protein CMM_0924 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830033|emb|CAN00961.1| conserved membrane protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 341 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 57/174 (32%), Gaps = 11/174 (6%) Query: 21 DIIVRSVRAGLPVSDAVAVIV------GQSSDPVRSEFRRVIETQ-----HLGLSLSESI 69 + + AGL + A + + + V + RRV + + + Sbjct: 40 RRLAVLLGAGLHLERAWSQLAPPGGRARRGERAVPALVRRVAAGAGSAPLADRVVAAATA 99 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + + + V + G L+ +L L+ L D ++ A+ Sbjct: 100 VEAAGGGTARSWCALAAGLEVADRTGAPLARSLDRLADSLVDIVRVRRDAGTALAGPVAT 159 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + +P L + VL+ G + L V ++ + IG R ++ Sbjct: 160 SRTVLLMPGAGLLLAAGLGFDPLRVLVTTVPGLVCLVVGSSLVAIGWRWNRRLV 213 >gi|160893699|ref|ZP_02074483.1| hypothetical protein CLOL250_01253 [Clostridium sp. L2-50] gi|156864684|gb|EDO58115.1| hypothetical protein CLOL250_01253 [Clostridium sp. L2-50] Length = 434 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 55/155 (35%), Gaps = 3/155 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA-VAVIVGQSSDPVRSEFRRVIETQ 59 + +KR + + +P+ +D++ + AGL V A + ++ S + E + Sbjct: 282 LHKAGQKRNQELMQAYPSFVDLLSLYMGAGLTVKGALLKIVTMTDSRILSEEINYTLNEI 341 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G+ +E R+ + L T++S + L L+ +K ++ Sbjct: 342 RSGIPETEGYYRLGNRLELPVYLKMMTLLSQNI--RKGTRDILNMLAEEELSALQLKREL 399 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 E + + + ++ +P M Sbjct: 400 AKKKGEEAGTRLLFPMILQLGVVMIIVIAPALMGF 434 >gi|314929716|gb|EFS93547.1| type II secretion system F domain protein [Propionibacterium acnes HL044PA1] Length = 288 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/169 (11%), Positives = 60/169 (35%), Gaps = 1/169 (0%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ++ + + + G + AV + ++ + +++ + E+ R Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + E +++ + S L ++ ++ R + +V+A + + + Sbjct: 164 MADELDSSEADAVLASLALAATHPRGASVTLKAIAGTIQQRLKVLRQVEAERSKPRNAVR 223 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I + + ++ ++ L P G +L+ A + ++ M Sbjct: 224 QITLVTIAMFGVLLVVGRSFLAPL-ATPPGQVLVTAAVVMYVTALVQMY 271 >gi|238758911|ref|ZP_04620083.1| Type II secretion system protein [Yersinia aldovae ATCC 35236] gi|238702868|gb|EEP95413.1| Type II secretion system protein [Yersinia aldovae ATCC 35236] Length = 386 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 58/161 (36%), Gaps = 9/161 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + + V A +P+ + + VIV Q+ + + V + G + S+++S+ Sbjct: 47 EGLVLITRQMATLVSASMPLDEVMDVIVKQNPNSKLTKVVCEVRKKIIEGYAFSDALSQF 106 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 S + +L G+L AL+ L+ + ++ ++ KV + + Sbjct: 107 PAI-----FSPIYKSLITAGELSGHLGIALSQLADYIEQKQQLQRKVTQALIYPV---IL 158 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 I TL+ F P + ++ L + Sbjct: 159 ILMSIIVSITLLAFVVPNIIEQFVSSEEELPLSTRVLILIS 199 >gi|289706419|ref|ZP_06502777.1| type II secretion system F domain protein [Micrococcus luteus SK58] gi|289556914|gb|EFD50247.1| type II secretion system F domain protein [Micrococcus luteus SK58] Length = 313 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 58/142 (40%), Gaps = 2/142 (1%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 L +FP+ ++ SV AG + A+ I G + + EFR + G SLS ++ Sbjct: 167 EAILSEFPSVAELFALSVGAGESAAGALERIAGTARGELAGEFRVTLADMRAGASLSAAL 226 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 M R + L V F + + G L++ L ++ +R+ + ++ + + Sbjct: 227 KAMGRRVQLAPVERFIGGVLIALDRGTPLADVLRAQAQDVRE--MGRRELMEAAGRKEIQ 284 Query: 130 AWIIGSLPFCVSTLVYFTSPGY 151 + T+++ PG Sbjct: 285 MMVPLVFGILPLTVIFAVFPGI 306 >gi|324991930|gb|EGC23853.1| bacterial type II secretion system protein F [Streptococcus sanguinis SK405] Length = 408 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/174 (11%), Positives = 50/174 (28%), Gaps = 10/174 (5%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 L D + + +G+P+++AV ++ Q++ +++ S Sbjct: 57 KKIKLKDISLFCKQMSVMLESGIPLNNAVDILEQQATSKNLKSSLKIVSKSLKEGS---- 112 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + G L E L +S +++ + Sbjct: 113 QLSKAMLDQEGMFPDLLIRMVQAGEKTGKLDEVLEKMSEHYNKELKTSRQIRGAMIYPA- 171 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGIMVM 179 + V L+Y P + + L + +AA+ + + Sbjct: 172 --VLAFLAVGAVLALLYIVIPSFSGIFEQSGMAMPLPTRIVLAASNFVRSYWYI 223 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ +A+ +++ V E ++ L + Sbjct: 270 FASTLAILTSAGIPLVEAIESAAATTNNAVVIEKMKIANE-----GLQKGERLTGMITST 324 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G+L L S + K +E + + Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLVKTSDYYEEELETAIKQLLSLLEPAMIIVMGVIIGG 384 Query: 139 CVSTLVYFTS 148 V++++ Sbjct: 385 IVASVMLPMF 394 >gi|307354768|ref|YP_003895819.1| type II secretion system F domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307158001|gb|ADN37381.1| Type II secretion system F domain protein [Methanoplanus petrolearius DSM 11571] Length = 324 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 60/174 (34%), Gaps = 5/174 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ I + + P AL + +G D + + ++ + EF +V+ Sbjct: 132 LQNQISNKKMDIERNLPYALAFMSILASSGTTPLDILKSVANENYGHISREFSKVLFRVE 191 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + +++ +V P IS GG LS L S+ L + + K Sbjct: 192 ILGEDAVTAMNALVSNTPSDPFRDICIDISNLIYGGGGLSGYLNAKSKELMNIRRQTDKE 251 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGY----MNVLINDPRGHMLLGVAA 169 S+ ++ G + ++ G + L D +L+ VA Sbjct: 252 FVESLGVFGEGYLGGVIMVLTLAILGIVITGALGIQIGPLKTDEMFFVLIYVAV 305 >gi|228968942|ref|ZP_04129890.1| Hypothetical membrane protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228790749|gb|EEM38402.1| Hypothetical membrane protein [Bacillus thuringiensis serovar sotto str. T04001] Length = 216 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 22/180 (12%), Positives = 64/180 (35%), Gaps = 1/180 (0%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HL 61 + KK + L+ + +V ++ A ++ P++ + R + Sbjct: 23 YKRKKYEEYVENQLMVYLEAVANAVSTHESMTLAFKSVLPLLQSPIKDDVERCLILYTED 82 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S+ ++ V+ +++ F ++ + S+ G + L N++ +D+K +AK+++ Sbjct: 83 GKSIRDAFHSFVQKYNYKDIKLFHDMLDLISKTGKDTDNILLNIAHEFQDKKIYRAKLKS 142 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + + + + + V +G +L + + Sbjct: 143 GMQPQRRTFKQTAIMLASLPIAALAINADDYVVFARTLQGRFILLAIIVVCIFSAFKIEK 202 >gi|78779570|ref|YP_397682.1| Type II secretory pathway component PulF-like [Prochlorococcus marinus str. MIT 9312] gi|78713069|gb|ABB50246.1| Type II secretory pathway component PulF-like protein [Prochlorococcus marinus str. MIT 9312] Length = 446 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 56/164 (34%), Gaps = 4/164 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + ++ GLP+ D++ +I S + V + LG+S S+S Sbjct: 104 TKDLAVTTKQLSSMIKTGLPLLDSLNIISETSENVTIK---YVFKETSLGISKGLSMSEN 160 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P + + + + G L + L +++L +K ++++ A + Sbjct: 161 LEKYP-EVFNEMYLALVSAGETAGLLPDTLDREAKLLESLAKIKGQIKSAMAYPIAIFTL 219 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + + V L V A+ LI + Sbjct: 220 TIVVVIAMLIFVIPIFVDIYEQSNAKLPTITQLLVDASNQLISL 263 Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 15/134 (11%), Positives = 42/134 (31%), Gaps = 7/134 (5%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVR 74 N + AG+P+ +A+++ S+ + + + G + + + + Sbjct: 312 LANFSRTLSALNSAGVPILEALSISRKTISNRIFKKIIDNMYKDIQSGNPIYKVLEK--- 368 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + T + + G LS+ + L+ + K ME ++ Sbjct: 369 ---EMVIPVMFTSMFRIGEETGELSQMINKLADFYEEEVTASVKTLTSIMEPLLIVFVAV 425 Query: 135 SLPFCVSTLVYFTS 148 + + + Sbjct: 426 IVAVILIAMYLPMF 439 >gi|206890249|ref|YP_002248063.1| pilin secretion/fimbrial assembly system protein, PilC, putative [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742187|gb|ACI21244.1| pilin secretion/fimbrial assembly system protein, PilC, putative [Thermodesulfovibrio yellowstonii DSM 11347] Length = 403 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/160 (11%), Positives = 53/160 (33%), Gaps = 6/160 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + ++AG+P++ A+ I + + + + G+ +E+IS Sbjct: 64 NLIEFARNLSIMLKAGIPLTTALTDIAENITRERFKRVISDIKTMVEKGMPFNEAIS--- 120 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 M + + + G L ++L ++ + ++++A ++ + +A + Sbjct: 121 --MHKEVFPSVVQYLIKIGEETGRLDKSLDEIANYFQRIEDLRAAIKRALIYPIFAAVVS 178 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 V M + L + L Sbjct: 179 FGAVCFWLIYVLPQIVNAMKGMGIAIPFITQLLIQIGSFL 218 >gi|50083666|ref|YP_045176.1| general secretion pathway protein F [Acinetobacter sp. ADP1] gi|49529642|emb|CAG67354.1| general secretion pathway protein F [Acinetobacter sp. ADP1] Length = 401 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 61/184 (33%), Gaps = 22/184 (11%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + V A +P+ +A+ + QS V++ V G SL++ + + Sbjct: 65 DLALMTRQLSVLVAAAIPLEEALRAVAKQSEKAHVQNLLLSVRSKVLEGHSLAQGMQQSG 124 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R+ + G+L L L+ +R M+ KVQ + + Sbjct: 125 RFPD------LYIATIAAGERSGHLDLILDQLADYTENRFAMQKKVQGAMIYPIILMLMS 178 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA------------AFMLIGIMVMRL 181 ++ V L+ + P + + VA M G++ + L Sbjct: 179 FAI---VMGLMTYVVPDIVKTFDQSKEALPWITVALMKASDFIRLAWPFLMSFGVIAIIL 235 Query: 182 MINF 185 I F Sbjct: 236 FIRF 239 >gi|83943491|ref|ZP_00955950.1| general secretion pathway protein F [Sulfitobacter sp. EE-36] gi|83845723|gb|EAP83601.1| general secretion pathway protein F [Sulfitobacter sp. EE-36] Length = 405 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 61/194 (31%), Gaps = 28/194 (14%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66 R + + +G+ V A+ + Q + V S + + G S + Sbjct: 60 RAKISRRALTLLTRQLATLIGSGIGVEQALKTVADQQNKPAVTSLLLNLRASVLDGRSFA 119 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ F + G L + + +LS + R + VQ + Sbjct: 120 QALGEYPHVFG-----DFYRASVAAGETSGQLGQVMEHLSGFVETRAKNRQTVQLALLYP 174 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL-------------------INDPRGHMLLGV 167 A + + + L+ F P + V + G +LGV Sbjct: 175 AILAVVSLA---VIVALLTFVVPDIVRVFTSRGAELPFLTRSLITVSDFINAWGIAMLGV 231 Query: 168 AAAFMLIGIMVMRL 181 AA +L G ++R Sbjct: 232 LAAVILGGASLLRQ 245 >gi|254369185|ref|ZP_04985197.1| type IV pili polytopic inner membrane protein [Francisella tularensis subsp. holarctica FSC022] gi|157122135|gb|EDO66275.1| type IV pili polytopic inner membrane protein [Francisella tularensis subsp. holarctica FSC022] Length = 409 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/155 (12%), Positives = 49/155 (31%), Gaps = 10/155 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVA--VIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 D + +AG+P+ + ++ + ++ + + G S S+++ Sbjct: 69 QDITEMTRQLAIMTKAGIPIIKSFEVFIMGIRKHPRLKILAIEIKQAIEGGESFSKALRN 128 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + GNL L ++ +++K KV+ Sbjct: 129 FPKI-----FDKLYVGLITAGEESGNLDLMLNKIADQREALQSIKKKVKKALSYPIIVCI 183 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 I L+ F P + + IN + + Sbjct: 184 IAAG---VTGILLTFAVPAFSAMFINSGKPLPAIT 215 >gi|270156769|ref|ZP_06185426.1| type II secretory pathway protein LspF [Legionella longbeachae D-4968] gi|289164782|ref|YP_003454920.1| type II secretory pathway protein LspF [Legionella longbeachae NSW150] gi|269988794|gb|EEZ95048.1| type II secretory pathway protein LspF [Legionella longbeachae D-4968] gi|288857955|emb|CBJ11815.1| type II secretory pathway protein LspF [Legionella longbeachae NSW150] Length = 400 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 22/160 (13%), Positives = 46/160 (28%), Gaps = 7/160 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D + + AG+PV +++ + Q+ E + L Sbjct: 61 ADLALFTRQLATLLAAGIPVEESLRGVSEQTEKDKVRELIIGVR----SKVLEGYGLAQA 116 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + G L L L+ +++ K KVQ + + Sbjct: 117 MAQYPHAFPELYRATVGSGEQTGRLDVVLEKLADYTENQQQTKQKVQQALIYPIIMIIVS 176 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + +S L+ F P + V + + + V + Sbjct: 177 IGI---ISFLLSFVVPKIIEVFTSSGQTLPEMTVLLISLS 213 >gi|260718935|ref|YP_003225076.1| type II secretion protein EtpF [Escherichia coli O103:H2 str. 12009] gi|291285876|ref|YP_003502693.1| EtpF [Escherichia coli O55:H7 str. CB9615] gi|257762446|dbj|BAI33942.1| type II secretion protein EtpF [Escherichia coli O103:H2 str. 12009] gi|290765749|gb|ADD59709.1| EtpF [Escherichia coli O55:H7 str. CB9615] Length = 407 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 22/153 (14%), Positives = 47/153 (30%), Gaps = 9/153 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 + + V A LP+ +A+ + QS R V G SL+ ++ Sbjct: 66 SAELALLTRQLSTLVAASLPLEEALDALSRQSEKPRQRDLIAAVRARVLEGHSLATAMGM 125 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + G L L+ L+ R+ M+ ++ + Sbjct: 126 FP-----GTFERLYCAMVAAGETSGRLDVVLSRLADYTEQRQIMRNRLLQALIYP---CV 177 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 + ++ L+ P + I+ + L Sbjct: 178 LTLVAVGVIAILLTAVVPKVVEQFIHMKQTLPL 210 >gi|238754449|ref|ZP_04615804.1| Type II secretion system protein [Yersinia ruckeri ATCC 29473] gi|238707278|gb|EEP99640.1| Type II secretion system protein [Yersinia ruckeri ATCC 29473] Length = 339 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 59/170 (34%), Gaps = 8/170 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + ++AGLP+ +++ ++ ++ R R + E G LSE+IS P Sbjct: 4 FTRHLATLLQAGLPLMNSLQLLATEADTPMWRCLLREIGENVIHGQPLSEAISIYPSIFP 63 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 T + ++L G L + L+ ++ ++ KV + + Sbjct: 64 -----TLYTQLIAVAELTGELDKCCIRLAEQQEKQQQLQKKVAKTLRYPAFVCAVALGVS 118 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHM--LLGVAAAFMLIGIMVMRLMINF 185 + +V L G LL ++ + G+ + + Sbjct: 119 IFMLMMVLPQFAQLYQSLNTSLPGLTLGLLYLSGVLVSYGVYFITALTII 168 >gi|325288257|ref|YP_004264438.1| hypothetical protein Sgly_0063 [Syntrophobotulus glycolicus DSM 8271] gi|324963658|gb|ADY54437.1| hypothetical protein Sgly_0063 [Syntrophobotulus glycolicus DSM 8271] Length = 309 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 65/176 (36%), Gaps = 2/176 (1%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSE 67 + AL II + + AV + + PV S F+ + L ++ Sbjct: 128 KRDIAAELETALSIITTAYLRNEDILTAVDENLPYLNPPVLSVFKGFVSRVRLVDPDVTA 187 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + + + + +L L + L D + + +++ + E + Sbjct: 188 ALHDLKDRIDNAVYVEWCDALIACQH-DRSLKTTLTPIVSKLSDMRVVNGELENMVFEPR 246 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 I+ L L+YF + + + L++ P G ++L + AA + + + + Sbjct: 247 KEFIIMQVLVVGNIPLMYFLNKDWYHTLMHTPLGQIILTICAAVIFVSTAFVIKLT 302 >gi|33600815|ref|NP_888375.1| hypothetical protein BB1830 [Bordetella bronchiseptica RB50] gi|33568415|emb|CAE32327.1| putative membrane protein [Bordetella bronchiseptica RB50] Length = 328 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 62/146 (42%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + I +R + P +D++ GL V ++ V++ + E + E Sbjct: 163 LLRRIARRRECAEAELPLFIDLLRLLQGVGLSVDQSMHVLIQDFRSVMPVLGGELKIAAE 222 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+SR+ + ++S +I + GG + + LA + +R+R+ ++ Sbjct: 223 QYARGRTREQSLSRLAQGFDNDDLSAICRLIVQVDRHGGAVQDPLARFAERVRERRRLEL 282 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 K + + K + ++ +L + + Sbjct: 283 KARVARLTVKMTGVMVVTLLPALLII 308 >gi|167769282|ref|ZP_02441335.1| hypothetical protein ANACOL_00605 [Anaerotruncus colihominis DSM 17241] gi|167668250|gb|EDS12380.1| hypothetical protein ANACOL_00605 [Anaerotruncus colihominis DSM 17241] Length = 309 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 63/184 (34%), Gaps = 2/184 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + AL II + + AV + + PVRS F + Sbjct: 120 IRLTANHYKKNIAAELETALSIITTAYLRNEDIQTAVEENIDYLNPPVRSVFVEFLTRIK 179 Query: 61 L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 L + ++ M + + + L L + L D + + ++ Sbjct: 180 LVDPDVDAALQDMGTKIDNAVFREWVAALLTCRH-DRGLKTILTPIVAKLSDMRIVNGEL 238 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + L E + + L L+Y+ + + +VL++ P G LL AA M I + Sbjct: 239 ENLVFEPRKEFITMQVLVIGNIPLLYWLNQDWYDVLMHTPLGQALLAAIAAVMFISTAAV 298 Query: 180 RLMI 183 + Sbjct: 299 IKLT 302 >gi|330940252|gb|EGH43384.1| type II secretion system protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 242 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + AG P+ ++ +++ Q ++ R+ E G LS ++ Sbjct: 4 AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEE 63 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 S + + GG L L LS L + ++ +V + ++ Sbjct: 64 GSQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 115 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + ++ L+ + P ++ + + G + + + +G + Sbjct: 116 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGEFL 159 >gi|323975731|gb|EGB70827.1| type II secretion system protein F [Escherichia coli TW10509] Length = 400 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 53/154 (34%), Gaps = 9/154 (5%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLALDLEQGVAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ I+ Sbjct: 121 FPP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLADKVKSALRYPI---IILAM 172 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 V +++F P + + +L Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPVLTQGI 206 >gi|238755456|ref|ZP_04616796.1| hypothetical protein yruck0001_3330 [Yersinia ruckeri ATCC 29473] gi|238706297|gb|EEP98674.1| hypothetical protein yruck0001_3330 [Yersinia ruckeri ATCC 29473] Length = 268 Score = 55.9 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 53/147 (36%), Gaps = 4/147 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--TQHLGLSLSESIS 70 + P +D++ ++AG+ + A+ R + + + L +SI Sbjct: 121 TEAIPLFIDMVAACIQAGMTIESALTHTAKNFESINRDLSMLFNKIMKKSEIIGLEKSIK 180 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + P E+ F + + G + E L LS ++ + + A+ + K + Sbjct: 181 EVSIVAPSTEIKMFCSTLQYSLSFGSTVYEQLNTLSAEIKKMQLLIAEEILSKLSTKLTL 240 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + + L+ SP + + + Sbjct: 241 PLFLFMVIPFIVLI--LSPSILGFIYH 265 >gi|163802897|ref|ZP_02196785.1| MSHA biogenesis protein MshG [Vibrio sp. AND4] gi|159173304|gb|EDP58130.1| MSHA biogenesis protein MshG [Vibrio sp. AND4] Length = 407 Score = 55.9 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 23/168 (13%), Positives = 52/168 (30%), Gaps = 8/168 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + +AG+P+ ++ ++ + E V+ G LS + Sbjct: 71 FSRQLFSLTKAGVPLLRSIRGLLQNCENKQLKEALEEVVAELSNGRGLSSA-----MQPH 125 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + S + + G L EAL L+ + +++A I Sbjct: 126 TKVFSPLFVSMINVGENTGRLDEALLQLANYYEQELETRKRIKAAMRYPTFVIVFITIAM 185 Query: 138 FCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVMRLMI 183 F ++ +V + +LL + F+ ++ +I Sbjct: 186 FILNIMVIPEFASMFTRFGVELPLPTRVLLTTSDFFVDYWGWLIAGII 233 Score = 37.4 bits (85), Expect = 0.98, Method: Composition-based stats. Identities = 11/135 (8%), Positives = 37/135 (27%), Gaps = 5/135 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 +++G+P++ ++A+ + + ++ + Sbjct: 268 RAQLSRFARTFSLMLQSGVPLNQSLALSGEALGNRFLE-----NRILEMKSAIEAGSTVS 322 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 V + + + + + G + E L +S + K +E + Sbjct: 323 VTAINSKVFTPLVIQMIAVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEPLLLVIV 382 Query: 133 IGSLPFCVSTLVYFT 147 G + + Sbjct: 383 AGMVMVLALGIFLPM 397 >gi|262280791|ref|ZP_06058574.1| general secretion pathway protein F [Acinetobacter calcoaceticus RUH2202] gi|262257691|gb|EEY76426.1| general secretion pathway protein F [Acinetobacter calcoaceticus RUH2202] Length = 401 Score = 55.9 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 62/179 (34%), Gaps = 13/179 (7%) Query: 9 TAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66 KF D + V A +P+ +A+ + QS V++ V G SL+ Sbjct: 58 QKKFSAYDLALMTRQLSVLVAAAIPLEEALRAVSKQSEKAHVQNLLSSVRSRVMEGHSLA 117 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + + + R+ + G+L L LS +R M+ KVQ + Sbjct: 118 QGMQQSGRFPD------LYIATVAAGERSGHLDLILDQLSDYTENRFAMQKKVQGAMIYP 171 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA--AFMLIGIMVMRLMI 183 + ++ V L+ F P + + + VA A I + ++I Sbjct: 172 IILMLMSFAI---VMGLMTFVVPEIVKTFDQNKDALPWITVALMKASDFIRHAWVFIII 227 >gi|54294249|ref|YP_126664.1| type II secretory pathway protein LspF [Legionella pneumophila str. Lens] gi|53754081|emb|CAH15554.1| type II secretory pathway protein LspF [Legionella pneumophila str. Lens] Length = 399 Score = 55.9 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 21/172 (12%), Positives = 47/172 (27%), Gaps = 7/172 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + + D + + AG+PV +++ + Q+ E + Sbjct: 48 QRAASSKGKVSAADLALLTRQLATLLAAGIPVEESLRGVSEQTEKDKVRELIIGVR---- 103 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 L + G L L L+ ++ + KVQ Sbjct: 104 SKVLEGYGLAQAMAQYPNAFPELYRATVGSGEQTGRLDVVLEKLADYTEKQQQTRQKVQQ 163 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + + ++ +S L+ F P ++V + + M Sbjct: 164 ALIYPLLMIIVSTAI---ISFLLTFVVPKIIDVFTESGQTLPPMTQLLINMS 212 >gi|325686526|gb|EGD28554.1| bacterial type II secretion system protein F [Streptococcus sanguinis SK72] Length = 408 Score = 55.9 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 20/174 (11%), Positives = 50/174 (28%), Gaps = 10/174 (5%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 L D + + +G+P+++AV ++ Q++ +++ S Sbjct: 57 KKIKLKDISLFCKQMSVMLESGIPLNNAVDILEQQATSKNLKSSLKIVSKSLKEGS---- 112 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + G L E L +S +++ + Sbjct: 113 QLSKAMLDQEGMFPDLLIRMVQAGEKTGKLDEVLEKMSEHYNKELKTSRQIRGAMIYPA- 171 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGIMVM 179 + V L+Y P + + L + +AA+ + + Sbjct: 172 --VLAFLAVGAVLALLYIVIPSFSGIFEQSGMAMPLPTRIVLAASNFVRSYWYI 223 Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ +A+ +++ V E ++ L + Sbjct: 270 FASTLAILTSAGIPLVEAIESAAATTNNAVVIEKMKIANE-----GLQKGERLTGMITST 324 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G+L L S + K +E + + Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLVKTSDYYEEELETAIKQLLSLLEPAMIIVMGVIIGG 384 Query: 139 CVSTLVYFTS 148 V++++ Sbjct: 385 IVASVMLPMF 394 >gi|297537342|ref|YP_003673111.1| Type II secretion system F domain-containing protein [Methylotenera sp. 301] gi|297256689|gb|ADI28534.1| Type II secretion system F domain protein [Methylotenera sp. 301] Length = 401 Score = 55.9 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 18/169 (10%), Positives = 53/169 (31%), Gaps = 6/169 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 D I + AG+P+ + + + S+ + + G LS++++ Sbjct: 59 NQDLVMFCFQIEQLSSAGVPLLECLTDLRESSNNPYFQKVLGAISAEVEGGKMLSQALAE 118 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + G L NL LR + + ++ + L A Sbjct: 119 HPN-----VFTEVFVSLVSAGEQTGQLPVVFNNLFNTLRWQDELMSQTKKLLAYPAFVAV 173 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ + + + ++ + + + +A + + + Sbjct: 174 VVFGAVAFLMSYLVPQMASFLKNMGQELPMNTKFLIALSDAFVNYWWLM 222 >gi|257064723|ref|YP_003144395.1| Flp pilus assembly protein TadC [Slackia heliotrinireducens DSM 20476] gi|256792376|gb|ACV23046.1| Flp pilus assembly protein TadC [Slackia heliotrinireducens DSM 20476] Length = 205 Score = 55.9 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 21/157 (13%), Positives = 54/157 (34%), Gaps = 7/157 (4%) Query: 4 LIKKRTAK----FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 K+R + P +D + ++AGL A + + D + + Sbjct: 51 RRKRRQREASAAIERHVPEMMDAVALGMKAGLSFDSAFGLYHARFDDELARACAQAHTEW 110 Query: 60 HLG-LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G +S ++++ M + F++ +S + G ++ L LS + + + Sbjct: 111 ESGLVSREQALTDMAERFDSAPLRRFASNVSRNLKFGSSIVRVLGALSAEAQAAYRTRME 170 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + + + L+ P + +L Sbjct: 171 EKVAKVPVRMLMPTAMLILPAM--LIVVLGPVMLELL 205 >gi|253996562|ref|YP_003048626.1| type II secretion system protein [Methylotenera mobilis JLW8] gi|253983241|gb|ACT48099.1| type II secretion system protein [Methylotenera mobilis JLW8] Length = 408 Score = 55.9 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 18/167 (10%), Positives = 46/167 (27%), Gaps = 6/167 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + ++AG+P+ +A+ + + + S + G + Sbjct: 71 FSRQMYTLLKAGIPIMNALNGLQASTQNKAFSLVIGNVRESLAGGR----ELSVALAQHP 126 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 S F + + G L L + + M+ +++A + Sbjct: 127 SVFSSFYVSMVRVGESTGLLDSVFFRLFEHIEFERFMRDQIKAALRYPTFVVIAMAVAIV 186 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHM--LLGVAAAFMLIGIMVMRLMI 183 V+ V + LL + ++ L++ Sbjct: 187 VVNLFVIPAFAKVFQSFGVELPLMTRGLLAFSGFMQAFWPYLLALIV 233 Score = 38.9 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 9/132 (6%), Positives = 45/132 (34%), Gaps = 7/132 (5%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 S ++G+P+++ + ++ + + + + S + Sbjct: 271 MARFARSFALSSKSGVPITNGLKLVAQTADNDYVG-----SRIDQMREGVERGESILRTA 325 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + G+L + + ++ + +++++ +++ L + + + Sbjct: 326 TNSGVFNPIVLQMIAVGEESGSLDDLMEEIADMY--QRDVEYEIKTLGAQIEPILIVFLG 383 Query: 136 LPFCVSTLVYFT 147 + + L F Sbjct: 384 VMVLILALGIFL 395 >gi|289667056|ref|ZP_06488131.1| fimbrial assembly protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 328 Score = 55.9 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 54/160 (33%), Gaps = 6/160 (3%) Query: 27 VRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 +++G+P+ A+ +I GQ + +R+ +V G SL E++S+ Sbjct: 1 MKSGVPIVGALEIIGSGQKNPRMRNMVGQVRTDIEGGSSLHEAVSKHPVQ-----FDELY 55 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 + + G L L ++ + + +K K++ + + + V Sbjct: 56 RNLIRAGEGAGVLETVLDTIASYKENIEALKGKIKKALFYPSMVVAVALLVSAILLIFVV 115 Query: 146 FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + V + ++ + L + Sbjct: 116 PQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWLILFVVI 155 Score = 35.5 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 15/131 (11%), Positives = 47/131 (35%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77 + +AG+P+ +A++++ G + + V R+ + +G ++ ++ ++ + Sbjct: 197 FARTTAVTFKAGVPLVEALSIVAGATGNSVYEKAVLRMRDDVSVGYPVNVAMKQVNLFPH 256 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++ + G L L ++ N + +E +I + Sbjct: 257 M------VVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG 310 Query: 138 FCVSTLVYFTS 148 V + Sbjct: 311 GMVIGMYLPIF 321 >gi|89256187|ref|YP_513549.1| Type IV pili polytopic inner membrane protein [Francisella tularensis subsp. holarctica LVS] gi|115314660|ref|YP_763383.1| Type IV pili polytopic inner membrane protein [Francisella tularensis subsp. holarctica OSU18] gi|156502243|ref|YP_001428308.1| Type IV pili polytopic inner membrane protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009778|ref|ZP_02274709.1| type IV pili polytopic inner membrane protein [Francisella tularensis subsp. holarctica FSC200] gi|254367515|ref|ZP_04983541.1| Type IV pili polytopic inner membrane protein [Francisella tularensis subsp. holarctica 257] gi|89144018|emb|CAJ79266.1| Type IV pili polytopic inner membrane protein [Francisella tularensis subsp. holarctica LVS] gi|115129559|gb|ABI82746.1| type IV pilus assembly protein [Francisella tularensis subsp. holarctica OSU18] gi|134253331|gb|EBA52425.1| Type IV pili polytopic inner membrane protein [Francisella tularensis subsp. holarctica 257] gi|156252846|gb|ABU61352.1| type II secretion system protein F/Type IV pili polytopic inner membrane protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 409 Score = 55.9 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 20/155 (12%), Positives = 49/155 (31%), Gaps = 10/155 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVA--VIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 D + +AG+P+ + ++ + ++ + + G S S+++ Sbjct: 69 QDITEMTRQLAIMTKAGIPIIKSFEVFIMGIRKHPRLKILAIEIKQAIEGGESFSKALRN 128 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + GNL L ++ +++K KV+ Sbjct: 129 FPKI-----FDKLYVGLITAGEESGNLDLMLNKIADQREALQSIKKKVKKALSYPIIVCI 183 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 I L+ F P + + IN + + Sbjct: 184 IAAG---VTGILLTFAVPAFSAMFINSGKPLPAIT 215 >gi|78777585|ref|YP_393900.1| type II secretion system protein [Sulfurimonas denitrificans DSM 1251] gi|78498125|gb|ABB44665.1| type II secretion system protein [Sulfurimonas denitrificans DSM 1251] Length = 414 Score = 55.9 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 64/156 (41%), Gaps = 11/156 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQ 59 + ++ K++ + D ++ + AG+ + D++ I ++D F+++ E Sbjct: 61 LSNIKKRKIEQ--DSLIASIRQLAVMTNAGISIYDSLNEISKSTTDKTLKLVFKKLSEDI 118 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + G SLS+ E+ + + G + +AL +L+ +L D + K Sbjct: 119 NSGHSLSK-----PMNNFRYELGNLCIAMVQLGEKTGKIDDALFSLANMLEDVRANIIKF 173 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + K ++ ++ S L+ + P + N+ Sbjct: 174 KKAMSYPKN---VMIAMAVAFSILISYVVPNFKNMF 206 >gi|182413437|ref|YP_001818503.1| type II secretion system protein [Opitutus terrae PB90-1] gi|177840651|gb|ACB74903.1| type II secretion system protein [Opitutus terrae PB90-1] Length = 417 Score = 55.9 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 62/184 (33%), Gaps = 9/184 (4%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHL 61 L ++R P L+ + +G+ +AV ++ + +R+ + E Sbjct: 66 RLERRRNVARAQRLP-FLESLHDLTTSGMSAGEAVRLLSTRIKEPALRALCSALWERLSE 124 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G LS ++S + + + G+L+E L L L +++ ++ ++ A Sbjct: 125 GAPLSRAMSDFPA-----VFDAATVNLIQAGEATGSLNETLDRLITHLNEQRELRRQLVA 179 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI--GIMVM 179 + + + + L + L V A + G+ V Sbjct: 180 ALAYPIFMVVVATGVILFFLFFLLPRLQVLLTSLGGELPMSTKLLVGLAQFALHYGLFVA 239 Query: 180 RLMI 183 ++ Sbjct: 240 LGLV 243 >gi|325294496|ref|YP_004281010.1| type II secretion system F domain [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064944|gb|ADY72951.1| Type II secretion system F domain [Desulfurobacterium thermolithotrophum DSM 11699] Length = 404 Score = 55.9 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 18/150 (12%), Positives = 46/150 (30%), Gaps = 6/150 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+ + A+ +I Q + ++ + G S ++S+ Sbjct: 70 FTRQLYAMIHAGISIVTALRIIKEQIQNKSLKKIIEDIASHIEEGGKFSTALSKYKNIFG 129 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++ G L E L L+ L + ++ K+++ I + Sbjct: 130 -----ELYISMIRAAEESGTLEETLKRLAEYLEKIEKLRGKIKSALFYPAFVLLIATIII 184 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 + + T L + + Sbjct: 185 GGILIFIIPTFKALYKDLGGELPSLTQFVI 214 Score = 37.4 bits (85), Expect = 0.82, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 50/138 (36%), Gaps = 7/138 (5%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70 + + V +GL + +A+++ +++ +R V G+S+S ++S Sbjct: 266 LKASIASFSRTLSSMVSSGLNILNALSISGETTNNEVLRRAINGVRNQVEKGISISVALS 325 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 R + S + + GNL E L+ ++ + + +E Sbjct: 326 R------YKVFSPMLINMVAIGEEAGNLDEMLSKVADFYEEEVDRTVDALTSLIEPIMMV 379 Query: 131 WIIGSLPFCVSTLVYFTS 148 +I G + F + + Sbjct: 380 FIGGIIGFIIIAMYLPIF 397 >gi|269986709|gb|EEZ92989.1| type II secretion system protein [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 348 Score = 55.9 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 55/155 (35%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 AK P+ L ++ ++RAG+ ++ + + + G + SE++ Sbjct: 100 AKIEKVLPDMLLLMAANLRAGMIPENSFIASMKPEFGKLNYLLNKAAIETQAGKNFSEAL 159 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 M + +IS + G L L NL+ L ++++ ++A Sbjct: 160 LEMNDMTNSEFFKDSVRIISEGIRSGAELHLILENLASNLLRNESIRNDMRAQVKSYSLF 219 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 +I +L + V G ++ + G Sbjct: 220 IFIAATLAAPLLYGVSSFLIGILDQVGATTGGSTA 254 >gi|228943036|ref|ZP_04105537.1| Hypothetical membrane protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228955918|ref|ZP_04117855.1| Hypothetical membrane protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228976631|ref|ZP_04137074.1| Hypothetical membrane protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783100|gb|EEM31236.1| Hypothetical membrane protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228803745|gb|EEM50427.1| Hypothetical membrane protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228816621|gb|EEM62745.1| Hypothetical membrane protein [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 304 Score = 55.9 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 22/180 (12%), Positives = 65/180 (36%), Gaps = 1/180 (0%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HL 61 + KK + L+ + +V ++ A ++ P++ + R + Sbjct: 111 YKRKKYEEYVENQLMVYLEAVANAVSTHESMTLAFKSVLPLLQSPIKDDVERCLILYTED 170 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S+ ++ V+ +++ F ++ + S+ G + + L N++ +D+K +AK+++ Sbjct: 171 GKSIRDAFHSFVQKYNYKDIKLFHDMLDLISKTGKDTDDILLNIAHEFQDKKIYRAKLKS 230 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + + + + + V +G +L + + Sbjct: 231 GMQPQRKTFKQTAIMLASLPVAALAINADDYVVFARTLQGRFILLAIIVVCIFSAFKIEK 290 >gi|20807713|ref|NP_622884.1| general secretory pathway protein F [Thermoanaerobacter tengcongensis MB4] gi|254479121|ref|ZP_05092472.1| Bacterial type II secretion system protein F domain [Carboxydibrachium pacificum DSM 12653] gi|20516264|gb|AAM24488.1| General secretory pathway protein F [Thermoanaerobacter tengcongensis MB4] gi|214034935|gb|EEB75658.1| Bacterial type II secretion system protein F domain [Carboxydibrachium pacificum DSM 12653] Length = 403 Score = 55.9 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 21/172 (12%), Positives = 53/172 (30%), Gaps = 8/172 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSL 65 KR + D + AG+P+ ++A + Q S+ ++ V E G +L Sbjct: 58 KRVK--VKDIAVFCRQFATLINAGIPILTSLATVKEQVSNKKLKMALSEVYEEVQKGRTL 115 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S+++ + + ++ G L + ++ ++ KV++ Sbjct: 116 SDAMRK-----REDVFPMLLYNMVEAGEVSGTLDRIMNEMADHYEKENDLNQKVKSALTY 170 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + + + T V + + A + Sbjct: 171 PAIVSIVAVFVVVFLLTNVLPIFVAMFENAGVTLPLPTRILLLIASSISNYW 222 Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77 + V AG+P+ A+ V+ + V +E RR E GL LSE + R+ + P Sbjct: 271 FARTLGTLVGAGIPLVRALEVVEKVVGNTVVAEGIRRAEEDVKKGLPLSEPLRRIGIFPP 330 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L L + + +E + + Sbjct: 331 M------VIQMISVGESSGALDTILEKTANFFDREVDTAVSQMTTLLEPIIILMLATVVG 384 Query: 138 FCVSTLVYFTS 148 F V +++ Sbjct: 385 FIVVSIIMPLF 395 >gi|302870515|ref|YP_003839152.1| Type II secretion system F domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|302573374|gb|ADL49576.1| Type II secretion system F domain [Micromonospora aurantiaca ATCC 27029] Length = 290 Score = 55.9 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 54/145 (37%), Gaps = 1/145 (0%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGL 63 ++R + LD++V S+ G + A+ + R V + L + Sbjct: 140 AQRRRDELRYALSAVLDLVVISLAGGAGLEQALDDACADTHGWAAGRLNRAVATARLLRI 199 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 +++ ++ + E+ + +S+ G + ++L + LR + + +A S Sbjct: 200 PPWQALGQLGEDTGVVELQELAATMSLAGTEGARIRDSLTIRAATLRAHQAAALEARANS 259 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTS 148 + S ++ + L+Y Sbjct: 260 ATERMSMPVMLLAAAYMLFLLYPAV 284 >gi|226951870|ref|ZP_03822334.1| general secretion pathway protein F [Acinetobacter sp. ATCC 27244] gi|294649127|ref|ZP_06726569.1| general secretion pathway protein F [Acinetobacter haemolyticus ATCC 19194] gi|226837410|gb|EEH69793.1| general secretion pathway protein F [Acinetobacter sp. ATCC 27244] gi|292825010|gb|EFF83771.1| general secretion pathway protein F [Acinetobacter haemolyticus ATCC 19194] Length = 401 Score = 55.9 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 62/184 (33%), Gaps = 22/184 (11%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V AG+P+ +A+ + QS V++ V G SL++ + + Sbjct: 65 DLALMTRQLSVLVAAGIPLEEALRAVSKQSEKSHVQNLLISVRSKVLEGHSLAQGMQQSG 124 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + G+L L LS +R M+ K+Q + + Sbjct: 125 R------FPELYIATVAAGERSGHLDLILDQLSDYTENRFAMQKKIQGAMIYPIILMLMS 178 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA------------AFMLIGIMVMRL 181 ++ V L+ + P + + VA A ++IG + + L Sbjct: 179 FAI---VMGLMTYVVPEIVKTFEQSKEALPWITVALMKASAFIKQTWVAMLIIGFIAVIL 235 Query: 182 MINF 185 F Sbjct: 236 FTRF 239 Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 13/129 (10%), Positives = 35/129 (27%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + R+G+P+ +A+ + S++ V + V + + + Sbjct: 271 FASTLSILTRSGVPLVEALRIGAEVSNNWVIRDAITVAMERVTEGG-----NLATQLERC 325 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L L S + +E ++ + Sbjct: 326 GYFPPMMVQMIRSGEASGELDRMLDRASTMQDREVTTFISTLLALLEPLMLIFMAAIVLV 385 Query: 139 CVSTLVYFT 147 V ++ Sbjct: 386 IVIAVMLPI 394 >gi|70734195|ref|YP_257835.1| type II secretion system protein F subunit [Pseudomonas fluorescens Pf-5] gi|68348494|gb|AAY96100.1| type II secretion system protein F domain [Pseudomonas fluorescens Pf-5] Length = 294 Score = 55.9 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 64/157 (40%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + + K+R + + ++ +G+ V A+ V+ ++ + E R ++ Sbjct: 134 LAYAAKRRQKHIALEISTFIPLLRILFESGMAVEQALRVLSSEAQKLLPELTQELRLILA 193 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL L +++ + + E + ++ GG ++L L ++L DR+ + Sbjct: 194 RVDSGLELGHELNQTATLLAVDEFTDTCVILQQLILQGGGAMKSLQALKQLLDDRRLTRL 253 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + M AK S ++ L + ++ PG+ + Sbjct: 254 QEYISKMSAKMSVVMMLFLFPALLIVL--AGPGFTAI 288 >gi|239618229|ref|YP_002941551.1| type II secretion system protein [Kosmotoga olearia TBF 19.5.1] gi|239507060|gb|ACR80547.1| type II secretion system protein [Kosmotoga olearia TBF 19.5.1] Length = 400 Score = 55.9 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 29/201 (14%), Positives = 61/201 (30%), Gaps = 30/201 (14%) Query: 4 LIKKRTAKFL----DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRSEFRRVIE 57 +KR + + V +G+ + DA+ V+ Q+ S R V+ Sbjct: 47 KTRKRKRSLFPIQPKELSLFSRQLATMVSSGVRIRDALQVLSKQTMFSRRFRKILVEVVL 106 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S+++ + + + + GG L EAL ++ +++ Sbjct: 107 LIESGEGFSDALEK------TRVFDELFVNLVRAGETGGVLDEALQRVAEFYEGMVDLQN 160 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM-------------- 163 +V++ + +S + P G M Sbjct: 161 QVKSAMSYPLFMMAFAVGIVGVISFFILPNLMSAFGTGFE-PGGVMGFLLWMNSLLTNHG 219 Query: 164 -LLGVAAAFMLIG--IMVMRL 181 ++ +A IG I +M Sbjct: 220 VVVAIAVVMFFIGAKIFMMTK 240 >gi|52841593|ref|YP_095392.1| type II secretory pathway protein LspF [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628704|gb|AAU27445.1| type II protein secretion LspF [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 399 Score = 55.9 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 22/188 (11%), Positives = 52/188 (27%), Gaps = 9/188 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + ++ D + + AG+PV +++ + Q+ E + Sbjct: 48 QRAASSKSKVSAADLALLTRQLATLLAAGIPVEESLRGVSEQTEKDKVRELIIGVR---- 103 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 L + G L L L+ ++ + KVQ Sbjct: 104 SKVLEGYGLAQAMAQYPNAFPELYRATVGSGEQTGRLDVVLEKLADYTEKQQQTRQKVQQ 163 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA--FMLIGIMVM 179 + + ++ +S L+ F P ++V + + I + Sbjct: 164 ALIYPLLMIIVSTAI---ISFLLTFVVPKIIDVFTESGQTLPPMTKLLINLSQFIKSYGL 220 Query: 180 RLMINFDV 187 ++ V Sbjct: 221 YSLVTIIV 228 >gi|148263980|ref|YP_001230686.1| type II secretion system protein [Geobacter uraniireducens Rf4] gi|146397480|gb|ABQ26113.1| type II secretion system protein [Geobacter uraniireducens Rf4] Length = 402 Score = 55.9 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 25/190 (13%), Positives = 58/190 (30%), Gaps = 24/190 (12%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66 R D ++ ++AGLP+ A+ I+ + + + E G +LS Sbjct: 57 RRKVDNKDLLTFNQELLVLIKAGLPIIQALDTILERVEKGKLGEILSEIREDVKGGAALS 116 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + + + P + G+L + + L+ + + KV + + Sbjct: 117 VAFEKHPKVFPH-----LYIASIQAGERTGDLPQTIRRYIAFLKKAEGFRKKVLSALVYP 171 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---------------LGVAAAF 171 +I V+ L+ + P + V + + Sbjct: 172 A---IVITVAFVAVTLLLVYVVPTFSQVYADSGSSLPVPTQMLIAFTGILKKFFWAGVGL 228 Query: 172 MLIGIMVMRL 181 ++ I + R Sbjct: 229 FILAIFIFRR 238 Score = 37.8 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 15/137 (10%), Positives = 45/137 (32%), Gaps = 5/137 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 + + + + +G+P+ +++ + VG ++ V + + E + Sbjct: 264 IKYAVSSFMRTLATVLGSGIPIIESLKMSVGTLNNMVLERKLL-----EAVVRVEEGVQL 318 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + + + G+L E L ++S + V S+E Sbjct: 319 STALEGAKIMPPLALRMLGVGETTGSLEEMLGDISDYFEEEIERHLNVLTTSIEPAIMII 378 Query: 132 IIGSLPFCVSTLVYFTS 148 + + + T+ Sbjct: 379 MGVVIGVIIVTMYLPIF 395 >gi|257789879|ref|YP_003180485.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|325829721|ref|ZP_08163184.1| type II secretion system protein F domain protein [Eggerthella sp. HGA1] gi|257473776|gb|ACV54096.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|325488216|gb|EGC90648.1| type II secretion system protein F domain protein [Eggerthella sp. HGA1] Length = 350 Score = 55.9 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 21/162 (12%), Positives = 54/162 (33%), Gaps = 8/162 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+ + +AV ++ D + V + +G L+ ++ Sbjct: 14 FCESVAVMHSAGIQMDEAVFLLGENMEDAAFKRACDDVYKELIVGKPLALAMDDSG---- 69 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G L L +L+R + + AK++ A ++ ++ Sbjct: 70 --CFPSHVVDMVGAGEHAGRLENVLWSLARYYDEEDRLYAKIKNAIAYPAALLCVMSAIL 127 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ + L + G A ++IG + + Sbjct: 128 LFTVIVILPVFVDVYHGLTGNLTAGS-FGYVNASIIIGWIAL 168 >gi|222099572|ref|YP_002534140.1| General secretion pathway protein F [Thermotoga neapolitana DSM 4359] gi|221571962|gb|ACM22774.1| General secretion pathway protein F [Thermotoga neapolitana DSM 4359] Length = 399 Score = 55.9 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 22/183 (12%), Positives = 55/183 (30%), Gaps = 22/183 (12%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + AG+ + +A+ ++ Q S R + G +L+++ ++ Sbjct: 61 EIATFCRQLSIMISAGIRIKEALNILARQEVFSKRFRKIILEIAINVETGDTLADAFRKV 120 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + GG L L + K ++ +V++ + Sbjct: 121 G------VFDNVLISMLEAGEEGGVLDRTLRRAADFYESVKRLQDEVKSAMAYPLFVLFF 174 Query: 133 IGSLPFCVSTLV-----------YFTSPGYMNVLINDPR---GHMLLGVAAAFMLIGIMV 178 + +S + SP ++L + V A + G V Sbjct: 175 AVVIVLVISFYILPNLVRAFGTSIPLSPTIQSLLKVNEFLSENWPWFSVVMAGAVFGFFV 234 Query: 179 MRL 181 + Sbjct: 235 LMK 237 >gi|172062964|ref|YP_001810615.1| type II secretion system protein [Burkholderia ambifaria MC40-6] gi|171995481|gb|ACB66399.1| type II secretion system protein [Burkholderia ambifaria MC40-6] Length = 314 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 3/131 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRM 72 FP+ALD++V AG ++ V + + P+ E + L ++SE+++ Sbjct: 170 FPDALDLLVICTMAGNSLASGVRRVARELERICPPLADELTVCADELTLSGNVSEALAHF 229 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + +T ++ + G +++AL LSR R + + + +A + K + + Sbjct: 230 ALRVNFSSARSLATTLTQSQRFGTPITQALRTLSRSERTEQVVALEEKAAKLAPKITVPM 289 Query: 133 IGSLPFCVSTL 143 + + V + Sbjct: 290 MLFILPTVGLI 300 >gi|320352795|ref|YP_004194134.1| general secretion pathway protein F [Desulfobulbus propionicus DSM 2032] gi|320121297|gb|ADW16843.1| general secretion pathway protein F [Desulfobulbus propionicus DSM 2032] Length = 407 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/159 (13%), Positives = 64/159 (40%), Gaps = 9/159 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 + A + + AG+P+ A++ ++ Q+++ +++ ++ + + G +L+ +++ Sbjct: 67 QQEIHIATRQLATLLGAGIPLVPALSGLIEQTTNRSLKTVLAQIKDAVNEGNALTSALAE 126 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 R S + + G+L L L+ ++ ++++V+A + + Sbjct: 127 HPRL-----FSKIYINMVRAGEASGSLDVVLDRLAEFGENQHAIRSRVKAALLYPI---F 178 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + + L+ F P +V + L + Sbjct: 179 MAVVGVVVLFLLITFIVPSITSVFEGTQQALPLPTLVLI 217 Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 17/131 (12%), Positives = 40/131 (30%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + + +G+P+ A+ ++ + V +E + G SLS+ Sbjct: 276 FSRTLASLLLSGVPLITALQIVRNIVDNVVLAEQINEACDELEKGASLSQFFK------G 329 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L LA + K +E + ++ Sbjct: 330 GKWFPPMLVQMMAVGEQSGTLDTMLAKAADSYEKEVEAKILALTSMIEPVMILSMGVAVS 389 Query: 138 FCVSTLVYFTS 148 F V +++ Sbjct: 390 FIVVSILLPIF 400 >gi|227872976|ref|ZP_03991275.1| conserved hypothetical protein [Oribacterium sinus F0268] gi|227841192|gb|EEJ51523.1| conserved hypothetical protein [Oribacterium sinus F0268] Length = 286 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 1/131 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 M+ + KRT + P + + V +G+ + DA ++ G+ + + R E Sbjct: 133 MRQKLVKRTENCETELPEVVSTMAILVNSGMILRDAWNMVGGRGEGDIYALMRDASEDIR 192 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + SE+I++ R E+ F++ + + G L LA S L + K + Sbjct: 193 NGHADSEAIAKFGRATNSPEIIKFTSALMQSMGKGAGELPLFLARQSSDLWNEKKQRLLQ 252 Query: 120 QALSMEAKASA 130 + AK Sbjct: 253 KGEQASAKLLM 263 >gi|310778053|ref|YP_003966386.1| Type II secretion system F domain protein [Ilyobacter polytropus DSM 2926] gi|309747376|gb|ADO82038.1| Type II secretion system F domain protein [Ilyobacter polytropus DSM 2926] Length = 402 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 28/189 (14%), Positives = 63/189 (33%), Gaps = 20/189 (10%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSE 67 + + + + AG+ + A+ + Q +++ + IE G S S+ Sbjct: 58 KKVKIKEMTQFTTELSTLIEAGISIVSALEIEAKQLKDGVLKTAISKAIEDIKGGESFSD 117 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++S+ + T + ++ G L L +L++ L ++KV++ + Sbjct: 118 ALSKHPK-----VFKKIYTGLVKSGEVSGQLDNILLDLAKYLDVSYKNRSKVKSAIIYP- 171 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA-----------FMLIGI 176 + L+ P +++V N L ML GI Sbjct: 172 --CVMFIVALAVSVFLLVVVLPSFVSVFENAGVDLPLPTRILLNLSLFMKTKWYLMLGGI 229 Query: 177 MVMRLMINF 185 + +I Sbjct: 230 AFIIALIRL 238 >gi|32472541|ref|NP_865535.1| type 4 fimbrial assembly protein pilC [Rhodopirellula baltica SH 1] gi|32443777|emb|CAD73219.1| type 4 fimbrial assembly protein pilC [Rhodopirellula baltica SH 1] gi|327539065|gb|EGF25698.1| type IV pilus biogenesis protein PilC [Rhodopirellula baltica WH47] Length = 404 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 24/195 (12%), Positives = 59/195 (30%), Gaps = 19/195 (9%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + KKR + +R+G+P+ ++ ++ QSS + + Sbjct: 51 LSIFGKKRKKVKGQIMATFYGQLASLLRSGVPMIRSLTILGEQSSTPVLGEVLAEIRGRV 110 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + +++SR S + + GG L +AL + ++++K + Sbjct: 111 EDGEPIGDTMSRYP-----GVFSDMAVNMVRAGTEGGFLEDALDRVGVFTELQEDLKGRT 165 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTS-------------PGYMNVLINDPRGHMLLG 166 + I + + P L++ G Sbjct: 166 VSAMAYPVFLFTIGSVVISALLVFFVPKFDMLFDRLRQKGEMPAMTEALLSFSNFLQGYG 225 Query: 167 VAAAFMLIGIMVMRL 181 + +G+++ Sbjct: 226 WILIVLAVGLIIFFR 240 Score = 35.5 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 11/136 (8%), Positives = 36/136 (26%), Gaps = 5/136 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ++ + G+P+ ++ I ++ ++++ S + Sbjct: 267 MNLSVARFCRVLGTLLANGVPILKSLD-ISRTATGNRLLSQSIADASENIRSGESLAKP- 324 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + +L L ++ L R + + +E Sbjct: 325 ---LRQSGYFPISVVEMISVGEESNSLDRVLPEIADSLEKRTFRRLDLFVRLLEPIMLLV 381 Query: 132 IIGSLPFCVSTLVYFT 147 + + V L+ Sbjct: 382 MAILVLAVVMALLVPV 397 >gi|315637876|ref|ZP_07893066.1| general secretory pathway protein F [Campylobacter upsaliensis JV21] gi|315482117|gb|EFU72731.1| general secretory pathway protein F [Campylobacter upsaliensis JV21] Length = 393 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 62/171 (36%), Gaps = 9/171 (5%) Query: 1 MKHLIKKRTAKFLDDF-PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 +K L K+ K D + AGL + +A+ ++ SS ++ + + Sbjct: 41 LKELKKQSRIKISDTLFCAFFKEFALLLNAGLSIKEALNLMSENSSKHLKDAAKELSANL 100 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + G SLS + + + L E+S + GNL+ + ++ + K + Sbjct: 101 NSGQSLSVAFGNLALNLNLSELSL-----IKMGEKTGNLAHIFSQIAELRTKLILNKKRF 155 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + + +L L++F P ++++ + L+ Sbjct: 156 KKAIHYP---CLVFLALFGAFLFLMFFVVPEFLDIFESLGANLPLMTQILL 203 Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 13/130 (10%), Positives = 39/130 (30%), Gaps = 5/130 (3%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 I +++G +S A + + E + + LSL + + + + Sbjct: 262 YFFMIFSLLLQSGNALSQAFHLASSSVENKFLKEKFK-----QIELSLGQGLELSLAFKK 316 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G L A ++ +++ ++ +E + + + Sbjct: 317 AGIFDELVISLLHSAMKSGTLDLLSAKIAHFYEEKQEDFIEIFLKFLEPLMTLLVGILVL 376 Query: 138 FCVSTLVYFT 147 F + Sbjct: 377 FLALGIFLPM 386 >gi|328906785|gb|EGG26556.1| LOW QUALITY PROTEIN: type II secretion system F domain protein [Propionibacterium sp. P08] Length = 288 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 19/169 (11%), Positives = 60/169 (35%), Gaps = 1/169 (0%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ++ + + + G + AV + ++ + +++ + E+ R Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGAVDQLVSRLDGRMEPREAFQR 163 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + E +++ + S L ++ ++ R + +V+A + + + Sbjct: 164 MADELDSSEADAVLASLALAATHPRGASVTLKAIAGTIQQRLKVLRQVEAERSKPRNAVR 223 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I + + ++ ++ L P G +L+ A + ++ M Sbjct: 224 QITLVTIAMFGVLLVVGRSFLAPL-ATPPGQVLVTAAVVMYVTALVQMY 271 >gi|320172804|gb|EFW48036.1| Type IV fimbrial assembly protein PilC [Shigella dysenteriae CDC 74-1112] Length = 266 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/182 (11%), Positives = 54/182 (29%), Gaps = 22/182 (12%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRY 75 + + ++AGL +S+ +A++ Q + + G++ S ++ Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L E L+R + ++ + KV++ + Sbjct: 121 FPP-----LYRAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175 Query: 136 LPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVM 179 + + V + +L+ + ++M Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLM 235 Query: 180 RL 181 R Sbjct: 236 RR 237 >gi|54297272|ref|YP_123641.1| type II secretory pathway protein LspF [Legionella pneumophila str. Paris] gi|53751057|emb|CAH12468.1| type II secretory pathway protein LspF [Legionella pneumophila str. Paris] Length = 399 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 22/188 (11%), Positives = 52/188 (27%), Gaps = 9/188 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + ++ D + + AG+PV +++ + Q+ E + Sbjct: 48 QRAASSKSKVSAADLALLTRQLATLLAAGIPVEESLRGVSEQTEKDKVRELIIGVR---- 103 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 L + G L L L+ ++ + KVQ Sbjct: 104 SKVLEGYGLAQAMAQYPNAFPELYRATVGSGEQTGRLDVVLEKLADYTEKQQQTRQKVQQ 163 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA--FMLIGIMVM 179 + + ++ +S L+ F P ++V + + I + Sbjct: 164 ALIYPLLMIIVSTAI---ISFLLTFVVPKIIDVFTESGQTLPPMTQLLINLSQFIKSYGL 220 Query: 180 RLMINFDV 187 ++ V Sbjct: 221 YSLVTIIV 228 >gi|238897818|ref|YP_002923497.1| component in type IV pilin biogenesis, transmembrane protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465575|gb|ACQ67349.1| component in type IV pilin biogenesis, transmembrane protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 405 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 58/171 (33%), Gaps = 8/171 (4%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVR 74 N + ++AGLP+ +++ ++ + R + + + G S++I + Sbjct: 61 LINFTRQLATLLQAGLPLVNSLQLLAKDMNIPIWRCILQNISQEVSRGEPFSDAIRHYPK 120 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 S + +L G+L + L++ +K ++ KV + Sbjct: 121 I-----FSKLYCELVAIGELTGHLDHSFFLLAQQQEQQKQLQKKVAKALRYPFLVCIVTL 175 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183 + + LV LL ++ + G+ + ++I Sbjct: 176 FVSLIMLILVLPEFAKIYASFDATLPWFTRALLFLSNKLINYGLYIASILI 226 >gi|314956949|gb|EFT01079.1| type II secretion system F domain protein [Propionibacterium acnes HL027PA1] Length = 227 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 61/169 (36%), Gaps = 1/169 (0%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ++ + + + G + AV + ++ + +++ + E+ R Sbjct: 43 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 102 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + E +++ + S L ++ ++ R + +V+A + + S Sbjct: 103 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 162 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I + + + ++ L P G +L+ VA +I ++ M Sbjct: 163 QITLVTIAMFGGLLVIGRSFLAPL-ATPPGQVLVAVAVVMYVIALVQMY 210 >gi|83591454|ref|YP_425206.1| type II secretion system protein [Rhodospirillum rubrum ATCC 11170] gi|83574368|gb|ABC20919.1| type II secretion system protein [Rhodospirillum rubrum ATCC 11170] Length = 411 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 65/172 (37%), Gaps = 6/172 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLG 62 L+ +R A + + R++ AG+P+ +A+ I +R RRV G Sbjct: 60 LVGRRGAIAERELQQLFLHLDRALGAGVPLLEALDDIGEVTGDGRLRMILRRVRGDLSQG 119 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L+LS+++ R R + + + G+L A L LR R+++ +++ Sbjct: 120 LALSDALGRHERALGP-----MVAPVVRAGEESGDLGGAFGPLVAHLRWREDLGRRLRKA 174 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + I L + +V ++ L + + +++ Sbjct: 175 TRYPLVVLGAIALLFVFLMAVVVPDLASFLGGLGEGLPPQTRALIGLSGLIV 226 >gi|326205013|ref|ZP_08194863.1| Type II secretion system F domain [Clostridium papyrosolvens DSM 2782] gi|325984818|gb|EGD45664.1| Type II secretion system F domain [Clostridium papyrosolvens DSM 2782] Length = 296 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 22/156 (14%), Positives = 60/156 (38%), Gaps = 4/156 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIET 58 + + +KKR + +FP+ ++ + + AGL +S A I S E ++ + Sbjct: 137 LTNKVKKRRLEIQLEFPDFINKLTLLLNAGLTMSKAWEKISLDSKKVSAFHKEVKKTVAQ 196 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G+S +E+ + + E+S ++I + + L + ++ Sbjct: 197 LKTGVSEAEAFGEFAKRLKTPEISRVMSIIIQ--NSKKGGYDLVMTLKLQSNESWEIRKN 254 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 E ++ + + + ++ +P +++ Sbjct: 255 AVRRLGEEASTKLLFPMMIMFFAIIIIVVTPALISM 290 >gi|239943092|ref|ZP_04695029.1| hypothetical protein SrosN15_19016 [Streptomyces roseosporus NRRL 15998] gi|239989550|ref|ZP_04710214.1| hypothetical protein SrosN1_19776 [Streptomyces roseosporus NRRL 11379] gi|291446568|ref|ZP_06585958.1| predicted protein [Streptomyces roseosporus NRRL 15998] gi|291349515|gb|EFE76419.1| predicted protein [Streptomyces roseosporus NRRL 15998] Length = 322 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 66/200 (33%), Gaps = 17/200 (8%) Query: 2 KHLIKKRTAKFLDD-----FPNALDIIVRSVRAGLPVSDAV-----AVIVGQSSDPVRSE 51 + +++RT + + +RAG A+ + + Sbjct: 118 RRWLRRRTGAREAERGAIAVAALCGAVAGELRAGREPGQALLAALREGLAEDGPATTTAS 177 Query: 52 FRRV-------IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN 104 R+ + G + ++ + + +S + V G L+ L Sbjct: 178 GSRLGEAEAAVLAAARFGGDVPAALRQAAEGPGMGGLSGMAACWRVAVDGGAGLAAGLER 237 Query: 105 LSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 L LR+ + + +++A A ++ ++ LP L + VL++ P G Sbjct: 238 LEAALREDRRRREELRAQLAGAWSTVVVLALLPVAGLGLGAALGAEPLRVLLHTPGGLAC 297 Query: 165 LGVAAAFMLIGIMVMRLMIN 184 L V + G+ R ++ Sbjct: 298 LAVGSFLEAAGLCWARRIVR 317 >gi|218132581|ref|ZP_03461385.1| hypothetical protein BACPEC_00440 [Bacteroides pectinophilus ATCC 43243] gi|217992307|gb|EEC58310.1| hypothetical protein BACPEC_00440 [Bacteroides pectinophilus ATCC 43243] Length = 444 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/166 (12%), Positives = 50/166 (30%), Gaps = 13/166 (7%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-----------GQSSDPVRS 50 + ++ R + D+ + + AG+ V A I + V Sbjct: 281 RKAVRLRNKQLQYDYTEIVSKLTLLTGAGMSVRRAWEKIALDYNNKMKDMPKEKYHAVYE 340 Query: 51 EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 E + G+S + + + R ++E T++ + G L L + Sbjct: 341 EMMTTLRQMQSGMSENIAYAEFGRRCGIKEYRKLGTLLEQNVRKGTRGLSVL--LEQESE 398 Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 + + + E + ++ + +V P M+ Sbjct: 399 EAFEQRKNLAKQLGEEAGTKLLLPMILMLAVVMVIVMVPAMMSFNF 444 >gi|291541801|emb|CBL14911.1| Bacterial type II secretion system protein F domain [Ruminococcus bromii L2-63] Length = 291 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 1/148 (0%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K I KR+ + L DF + + AG+ + +A + + + +E + + + Sbjct: 139 KKRILKRSDELLHDFSEVVSKLALLTNAGMILREAWQEVAFAGTSTIYTEMQTTVNEMNN 198 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQ 120 G+S +++ + E+ F++ I G + L+ L S+ + K + + Sbjct: 199 GVSEIDAMFNFGSRCIIPEIKKFTSTIIQGMTKGNSELTAMLQEQSKEVWQLKKQLVRRE 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTS 148 +K I + ++ Sbjct: 259 GEKAASKLLIPICVMFVGILIMIIVPIF 286 >gi|266619395|ref|ZP_06112330.1| putative type IV pilus assembly protein PilC [Clostridium hathewayi DSM 13479] gi|288869071|gb|EFD01370.1| putative type IV pilus assembly protein PilC [Clostridium hathewayi DSM 13479] Length = 415 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 10/162 (6%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + + + +G+P++ A+ +I +S ++ + ++ G+ LS+++ Sbjct: 79 LARFMSEMAVMLNSGIPLAQALNLISVRESRKDLKEIYGKLYHMILHGMDLSQAME---- 134 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 M + + GG+L++A ++ + KV + ++ Sbjct: 135 -MQDGVFPPVLIGMVRAGEAGGSLADAFGKMAEYFEKEDETRKKVGTAMIYPA---FLFL 190 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 ++ V L P + L + + IG+ Sbjct: 191 TVAVVVILLFTTVLPSFFE-LFESMEKIPVSTQVLMAVSIGL 231 Score = 34.3 bits (77), Expect = 8.3, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 43/130 (33%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 G+P +A+ + S ++ +V+E G+ LS+S++++ P Sbjct: 284 FARTFSFLYGGGVPFINALELTADALGSRYMKKRLCQVMEEVKNGMLLSDSLAQIRELCP 343 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 S + GNL L + R K +E + + Sbjct: 344 EFIHS------VYIGEESGNLEAMLKRTADSFEIRSETAIKRLLSLLEPTMIIIMAVIIG 397 Query: 138 FCVSTLVYFT 147 + + +++ Sbjct: 398 YLMLSVMVPI 407 >gi|215447993|ref|ZP_03434745.1| transmembrane protein [Mycobacterium tuberculosis T85] Length = 217 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 60/161 (37%), Gaps = 1/161 (0%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 AL+++V +RAG A ++ ++ PV R V LG ++ + Sbjct: 57 QALEAALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAA 116 Query: 74 RYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R L + + S G ++ + R + +R+ A+V A A+ASA I Sbjct: 117 RSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAI 176 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + LP L ++ L+ G LL V Sbjct: 177 LAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLES 217 >gi|126179945|ref|YP_001047910.1| type II secretion system protein [Methanoculleus marisnigri JR1] gi|125862739|gb|ABN57928.1| type II secretion system protein [Methanoculleus marisnigri JR1] Length = 307 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 56/174 (32%), Gaps = 3/174 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGL-SL 65 R P A++ + AG+ + ++ + E R + L Sbjct: 126 RRRNIDATLPYAINYVTAMSSAGITPDEVFRLLGQSTIYGESAVEARYISRETDFFGKDL 185 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + + P + + F G NL+E N + N + K ++ Sbjct: 186 LDALRTVSQATPSERMREFLQGAVASISSGSNLTEYFRNKAHQYTLENNQQQKSFLETLG 245 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A +++ + + L+ S + +DP ++ + V+ Sbjct: 246 LIAESYVTA-MVAGMLFLIILQSVMTILSGDSDPFFLYVIIYMIVPFGSMMFVV 298 >gi|91794738|ref|YP_564389.1| type II secretion system protein [Shewanella denitrificans OS217] gi|91716740|gb|ABE56666.1| type II secretion system protein [Shewanella denitrificans OS217] Length = 422 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/153 (10%), Positives = 44/153 (28%), Gaps = 6/153 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 I + AG+P+ + ++ +R +I G+ LS ++ Sbjct: 87 LTRQIATMLAAGVPLVTTLELLGRGHEKPKMRELLAIIIADVQSGIPLSNALR-----PH 141 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L ++ + +K+K++ A + ++ Sbjct: 142 RRYFDDLYVDLVAAGEHSGALDLVFDRIAIYKEKAEALKSKIKKAMFYPAAVVVVAVAVT 201 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + V + L + + Sbjct: 202 VLLLLFVVPQFEDIFAGFGAELPAFTQLVLGIS 234 >gi|238754543|ref|ZP_04615897.1| General secretion pathway protein F [Yersinia ruckeri ATCC 29473] gi|238707174|gb|EEP99537.1| General secretion pathway protein F [Yersinia ruckeri ATCC 29473] Length = 377 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 63/173 (36%), Gaps = 8/173 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60 K+ KR +K + + + + + + +A+ I Q+ + V + ++ E Sbjct: 29 KNKNNKRISK--SELITFTRQLATLISSSIAIDEALDTIANQTDNKSVLNIIFKIKEKIT 86 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SLSESI R + + + G+L L L+ + + + +K K+ Sbjct: 87 SGHSLSESIMLFPRAFNI-----LYHSMITAGETSGHLGVTLHRLADNIEETQRVKNKLV 141 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + A + + + ++V + + L ++ + + Sbjct: 142 QSLIYPCALLLVSIGVISILLSVVVPKVLEQFIYMGQELPFSTKLLLSISDFI 194 >gi|153853655|ref|ZP_01995035.1| hypothetical protein DORLON_01026 [Dorea longicatena DSM 13814] gi|149753810|gb|EDM63741.1| hypothetical protein DORLON_01026 [Dorea longicatena DSM 13814] Length = 376 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 9/142 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--------QSSDPVRSEF 52 ++ ++R + ++D+P + + + AG+ V A I ++ V E Sbjct: 215 IRKAEEERKKQMIEDYPEVISKLTLYLGAGMTVKKAWRKITEGYMKEKEDENERYVYEEM 274 Query: 53 RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRD 111 R+ G++ +E R LQ ++S + LSE L S + Sbjct: 275 RQTCHEMDSGVTEAEGYENFGRRCDLQIYIRLGALLSQNLRKGTKGLSELLKLESIQAFE 334 Query: 112 RKNMKAKVQALSMEAKASAWII 133 + +AK K + Sbjct: 335 ERKARAKRLGEEAGTKLLLPMF 356 >gi|86742973|ref|YP_483373.1| type II secretion system protein [Frankia sp. CcI3] gi|86569835|gb|ABD13644.1| type II secretion system protein [Frankia sp. CcI3] Length = 448 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 59/171 (34%), Gaps = 4/171 (2%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI----ETQHLGLSLSESISRMV 73 + L + AG P +A+ G + V + R + L +E ++ Sbjct: 79 DLLAAFAAELDAGAPQLEALRRAAGGIDELVAAPAGRSAWLPIDQLGAALDRTEEPGALL 138 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + V + +G L+ L+ + R ++ + ++S ++ Sbjct: 139 CRSEASSLRQLGVAYQVCAAVGARLAPVATMLAAVARADAVRAGELTSALAGPRSSGRLV 198 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 SLP L + VL+ P G L V L+G+ +R + + Sbjct: 199 ASLPLAGIVLGSLAGAAPIAVLLGTPAGIGCLLVGGLADLVGVRWLRRLAD 249 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 59/171 (34%), Gaps = 17/171 (9%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 +FL DFP ALD+I +R+G + A + + + +E V + G ++ + Sbjct: 276 NRFLADFPLALDLIAACLRSGETIMSAARAVGAATGGVLGAELCSVGDALAAGATVGAAC 335 Query: 70 SRMVRYMPLQEVSFFSTVI-SVQSQLGGNLSEALANLSRILRDRKNM------------- 115 R+V ++ + + + + DR M Sbjct: 336 ERLVAASHAPRLTDRLPGWARRGRVTPPSRRARMVRAAIMALDRAEMSGAKLAATLTRLA 395 Query: 116 ---KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 + + A S+ A A ++ P + L F G + +++ + Sbjct: 396 DRARDEAHAESIAAARRAGVLAVAPLGLCFLPAFLLLGVVPMVLGSVPALL 446 >gi|328945104|gb|EGG39259.1| bacterial type II secretion system protein F [Streptococcus sanguinis SK1087] Length = 408 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 51/174 (29%), Gaps = 10/174 (5%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 L D + + +G+P+++AV ++ Q+ +VI + Sbjct: 57 KKIKLKDISLFCKQMSVMLNSGIPLNNAVDILEQQTDAKNLKASLKVISKGLKEGN---- 112 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + G L E L +S +++ + Sbjct: 113 QLSKALIEQNGLFPDLLIRMVQAGEKTGKLDEVLERMSEHYNKELKTSRQIRGAMIYPAV 172 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGIMVM 179 A++ + L+Y P + + L + +AA+ + + Sbjct: 173 LAFLAVAATLV---LLYVVIPNFSGIFEQSGVALPLPTRIVLAASNFVQSYWYI 223 Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 37/130 (28%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ +A+ +++ V + R+ L + Sbjct: 270 FASTLATLTSAGIPLVEAIDSAAATTNNAVVIDKLRIANE-----GLQKGERLTGMLTST 324 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G+L L S + K +E ++ + Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLNKTSDFYEEELEAAIKQLLSLLEPAMIIFMGVIIGG 384 Query: 139 CVSTLVYFTS 148 V++++ Sbjct: 385 IVASVMLPMF 394 >gi|299144142|ref|ZP_07037222.1| putative bacterial type II secretion system protein F [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518627|gb|EFI42366.1| putative bacterial type II secretion system protein F [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 393 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 49/164 (29%), Gaps = 9/164 (5%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR +D L + V A + A V++ S ++V + LS Sbjct: 54 KRRTFNNEDLHILLYQLYVLVNAKNTIPSAFRVLLKSYSGKKNKILKKVYQDLLSAKPLS 113 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ E + + N+ L NLS ++ + K++ Sbjct: 114 DALKESG------EFPNLVVNMIGVGENSSNMILILKNLSEYYLNKVKLDKKIRNALSYP 167 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + F V+ L+ P + V N + Sbjct: 168 ILLFVVTF---FIVNFLMLNILPTFAEVFKNSGAELPYITQILI 208 >gi|329895107|ref|ZP_08270835.1| general secretory pathway protein F [gamma proteobacterium IMCC3088] gi|328922508|gb|EGG29847.1| general secretory pathway protein F [gamma proteobacterium IMCC3088] Length = 407 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 20/175 (11%), Positives = 60/175 (34%), Gaps = 14/175 (8%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + +++ +P+ +++ QS +++ +V G +L+ ++ Sbjct: 69 DLALMTRQLATLIQSNMPIDESLRAAAEQSRKPKLKALLLQVRARVAEGYTLAYALGEYP 128 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G L++ L L+ R+ + K+ + ++ Sbjct: 129 K-----VFDEMYRAMVTAGEHAGFLAQVLMQLADYTEQRQYTQQKLMMALIYPF---ILL 180 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-----IGIMVMRLMI 183 G V L+ + P + + + L V + G+ ++ ++ Sbjct: 181 GVAVSVVVALMVYVVPELVGIFAHTQTDLPPLTVGLIAVSDFLQHRGLWLLVAIV 235 >gi|328943879|ref|ZP_08241344.1| hypothetical protein HMPREF0091_10569 [Atopobium vaginae DSM 15829] gi|327491848|gb|EGF23622.1| hypothetical protein HMPREF0091_10569 [Atopobium vaginae DSM 15829] Length = 153 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 59/145 (40%), Gaps = 2/145 (1%) Query: 3 HLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 L +KR L + P LD+I + +GL ++ + + + F+R + L Sbjct: 1 MLTRKRNRMMCLQELPTLLDVITLGLSSGLSFEASLDLYCMHYNGVLAQLFQRQLLQYRL 60 Query: 62 -GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +S ++ + + + ++ F++ + + G L L++ ++ +RD + + + + Sbjct: 61 GVISRRAALQDIADDLHIDALTRFTSTVIQALECGSPLVGVLSDQAQSIRDAQRFELEEE 120 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145 + K + + + + Sbjct: 121 IEKIPVKMLIPMGVLIVPAMLISIM 145 >gi|241764544|ref|ZP_04762563.1| type II secretion system protein [Acidovorax delafieldii 2AN] gi|241366036|gb|EER60646.1| type II secretion system protein [Acidovorax delafieldii 2AN] Length = 424 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/166 (12%), Positives = 47/166 (28%), Gaps = 4/166 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R +D L + +RAG+P DA+ +V +S+ V L+ Sbjct: 67 RNQVRAEDLAGFLRDLGLMMRAGVPALDALTTLVEESNSVGNRAMAAVARNMLEDLNAGV 126 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + G L LA + + N++ ++ + Sbjct: 127 GMTD-AFNRHPNVFPETVRNLVSIGDQTGTLDRMLAEAAEHVERMINIRRDIKTALIYPS 185 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 ++ S+ +Y+ P + + Sbjct: 186 ---FVFASIIGVAIFWIYYVVPNMARLFKQLQAKLPPITEGLVAFA 228 >gi|327310806|ref|YP_004337703.1| type II secretion system protein [Thermoproteus uzoniensis 768-20] gi|326947285|gb|AEA12391.1| type II secretion system protein [Thermoproteus uzoniensis 768-20] Length = 232 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 72/183 (39%), Gaps = 7/183 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHL 61 HLI R F ++FP L +++ + AG+P+ AVA + + + E V+ + Sbjct: 39 HLISARRTHFENNFPYTLGVLLPLLTAGVPLGRAVARLAEVEDDKYIARELSLVVRDMVV 98 Query: 62 GL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 S +++ +P Q +V++ S++ L L + +K M+A Sbjct: 99 MGSSPIDALVHSAERVPSQNYRETVSVLARSSRITERLDAVLMARLDWMLRQKQMRAASL 158 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL-----INDPRGHMLLGVAAAFMLIG 175 S+ ++I + + + S + L DP M+L LIG Sbjct: 159 VRSIAVLFEIYVIAAQLLPILLFIIALSLSPLGTLRIGGISLDPLTVMVLAGLIYSPLIG 218 Query: 176 IMV 178 ++ Sbjct: 219 LVF 221 >gi|283781435|ref|YP_003372190.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283439888|gb|ADB18330.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 400 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 62/177 (35%), Gaps = 21/177 (11%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMPLQE 80 + +R+G+P+ +++V+ Q+S+P E + G + + ++R R Sbjct: 68 QLAALLRSGVPLLRSISVLRDQTSNPNLKEILDELYRKVEDGTPMGDVMARFPRA----- 122 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 S + + GG L +AL ++ ++ +K + + A + ++ + Sbjct: 123 FSDMAINMVRAGSEGGFLEDALERVASFTETQEELKGRTISAVAYPLILASVGTTVVTVL 182 Query: 141 STLVYFTSPGYMNVLINDPRGHML---------------LGVAAAFMLIGIMVMRLM 182 L + + ML L + A IG+ + + Sbjct: 183 IVFFVPKFATMFERLKANNQLPMLTDWLLKLSDTLRNYGLVIVAVLAAIGVWLYMKL 239 Score = 34.3 bits (77), Expect = 7.2, Method: Composition-based stats. Identities = 13/129 (10%), Positives = 37/129 (28%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 ++ + G+P+ A+ I +++ ++++ S + Sbjct: 270 FCRVLGTLLHNGVPILKALE-ISREAAGNRILSKAIADASENISAGQSLAAPLASSGH-- 326 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + ++ L L L+ L R + + +E + + Sbjct: 327 --FPKMVVEMISVAEESNTLDRVLVELADSLERRTARQLDLLVRLLEPVMLLILAFIILI 384 Query: 139 CVSTLVYFT 147 V L+ Sbjct: 385 VVIALLVPV 393 >gi|148358894|ref|YP_001250101.1| type II secretory pathway protein LspF [Legionella pneumophila str. Corby] gi|296106942|ref|YP_003618642.1| general secretion pathway protein F [Legionella pneumophila 2300/99 Alcoy] gi|148280667|gb|ABQ54755.1| type II secretory pathway protein LspF [Legionella pneumophila str. Corby] gi|295648843|gb|ADG24690.1| general secretion pathway protein F [Legionella pneumophila 2300/99 Alcoy] Length = 399 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 20/169 (11%), Positives = 47/169 (27%), Gaps = 7/169 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + ++ D + + AG+PV +++ + Q+ E + Sbjct: 48 QRAASSKSKVSAADLALLTRQLATLLAAGIPVEESLRGVSEQTEKDKVRELIIGVR---- 103 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 L + G L L L+ ++ + KVQ Sbjct: 104 SKVLEGYGLAQAMAQYPNAFPELYRATVGSGEQTGRLDVVLEKLADYTEKQQQTRQKVQQ 163 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + + ++ +S L+ F P ++V + + Sbjct: 164 ALIYPLLMIIVSTAI---ISFLLTFVVPKIIDVFTESGQTLPPMTQLLI 209 >gi|82778253|ref|YP_404602.1| putative type II secretion protein [Shigella dysenteriae Sd197] gi|81242401|gb|ABB63111.1| putative type II secretion protein [Shigella dysenteriae Sd197] Length = 399 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTCQLATLVQAAIPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 S+ + V + L + L+ ++ A G+ Sbjct: 183 TSVVTILLAAVVPKIIEQFDHLGHALPATTRALIAMSDALQASGVYW 229 >gi|117924239|ref|YP_864856.1| type II secretion system protein [Magnetococcus sp. MC-1] gi|117607995|gb|ABK43450.1| type II secretion system protein [Magnetococcus sp. MC-1] Length = 408 Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 16/163 (9%), Positives = 56/163 (34%), Gaps = 9/163 (5%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 +++ L + ++AG+P+ + I + + ++++ G SL+E Sbjct: 64 KKVTMEELAEGLTNMAVMLKAGIPLITCLKDTIADHDNSTLSKVGQQLVMRVEGGSSLAE 123 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +++ RY P + + G+L + + + + + ++ ++ Sbjct: 124 ALAAYPRYFP-----DTLVFLVRLGEETGSLDQTVRDAAAHTQKMDKIRRDTKSALTYPT 178 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 ++ ++ + +Y P ++ + Sbjct: 179 ---FMFVAIFGAMFFWIYLVVPPMADMFKQFQLDLPVFTKMVI 218 Score = 34.7 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 41/144 (28%), Gaps = 15/144 (10%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLSESISRMV 73 + + +RAG+ V + V+ + + E ++ G+ L ES ++ Sbjct: 274 NLAFITQYMSMMLRAGVDVMRTLQVLKEAIPNEIYREHLDQVQENLVSGIGLRESFDKVG 333 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 F + + G LSE L ++ R V+ + + Sbjct: 334 ------IFPNFVVRMIGVGEQSGTLSEQLEYIAEDYR--------VKLDELVGNIGKLVE 379 Query: 134 GSLPFCVSTLVYFTSPGYMNVLIN 157 L + L Sbjct: 380 PIAIVVGGGLFIALAMALFAPLYQ 403 >gi|170723698|ref|YP_001751386.1| type II secretion system protein [Pseudomonas putida W619] gi|169761701|gb|ACA75017.1| type II secretion system protein [Pseudomonas putida W619] Length = 402 Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 24/181 (13%), Positives = 55/181 (30%), Gaps = 21/181 (11%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + +RAG+P+ A V+ S + R+ + GL L++++ R + Sbjct: 66 AGFSRQLATLLRAGVPLLQAFQVMGRSGCSAAQAALLERLKQDVAAGLGLADALQRHPQ- 124 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + G L L L+ +L R+ + +V+ + Sbjct: 125 ----WFDGLYCNLVRVGEQSGTLDRQLEQLAGMLEQRQALLKRVRKAMLYPLLLLLTGLG 180 Query: 136 LPFCVSTLVYFTSPGYMNVL-------------INDPRGH--MLLGVAAAFMLIGIMVMR 180 + + V ++ G LL + + +G+ + Sbjct: 181 VSAVLLLEVIPRFESLFAGFDAALPAFTQWVIDLSTGLGRHGPLLLITLLVVALGMRQLY 240 Query: 181 L 181 Sbjct: 241 R 241 Score = 35.1 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 13/137 (9%), Positives = 40/137 (29%), Gaps = 7/137 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISR 71 + + AG+P+ D + + + R+ + G L ++++ Sbjct: 266 QAALARFARSLATAYAAGVPLLDGLGTVARACGGELHERAILRLRQGMANGQGLHQAMAA 325 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P ++ + G L + L + + ++ + +E Sbjct: 326 EPLFPP------LLVQLTAIGESSGTLDQMLEKAASLYEEQVSQALDQLTSLLEPAIVLV 379 Query: 132 IIGSLPFCVSTLVYFTS 148 + + V + Sbjct: 380 LGLLVGGLVVAMYLPIF 396 >gi|238793626|ref|ZP_04637249.1| Type II secretion system protein [Yersinia intermedia ATCC 29909] gi|238727041|gb|EEQ18572.1| Type II secretion system protein [Yersinia intermedia ATCC 29909] Length = 194 Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 54/130 (41%), Gaps = 4/130 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +++++ K+ L+ P +DI V++G+ + A++ + + + ++ + Sbjct: 51 IRNILNKKIKCLLNSLPFFIDITAACVQSGMTIDSALSYTAKKFILINPDLSLIVTKITK 110 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + L +I + E+ F + + G + + L L++ +R+ + + Sbjct: 111 RAEIN-GLESAIKEFQQLSTETEIKMFCSALQYSISFGSTVYDQLIKLAQDMREMQLLVT 169 Query: 118 KVQALSMEAK 127 + + + K Sbjct: 170 EEKNSKLSTK 179 >gi|238062113|ref|ZP_04606822.1| type II secretion system protein [Micromonospora sp. ATCC 39149] gi|237883924|gb|EEP72752.1| type II secretion system protein [Micromonospora sp. ATCC 39149] Length = 301 Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 16/183 (8%), Positives = 55/183 (30%), Gaps = 4/183 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++ A+ + G + A+ + + + + E R + Sbjct: 102 VGRAEQQAIARIE-AVGEWTRRLKDVSSTGQGLQQAILGTLATAPEEIEEEVRLLAARLQ 160 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQS-QLGGNLSEALANLSRILRDRKNMKAKV 119 G ++ + + + G L + L +++ + ++ Sbjct: 161 AGWLAKSALLAFADEIGDPVCDQVVAALILHLSDRGERLGDVLGSIAGAAAAEVATRREI 220 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +A + + + + + + Y+ P G +++ V + + + + Sbjct: 221 EAKRTQPRFAVRFLTGMTLLTLAY-GLVNTDYIRP-YGTPFGQLVMFVLGSAFVGLLAWV 278 Query: 180 RLM 182 R M Sbjct: 279 RAM 281 >gi|258515887|ref|YP_003192109.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM 771] gi|257779592|gb|ACV63486.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM 771] Length = 401 Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 51/154 (33%), Gaps = 5/154 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D + +G+P+ A+ + + + +++ G SLS ++S Sbjct: 63 KDLAAFSRNFASLINSGIPILKALILSMQTNKKSFNVVLDQLVLDLKAGSSLSGAMSNYP 122 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R+ P + + GG L + L L+ + ++ KV+A Sbjct: 123 RFFPK-----IFIGMIAAGESGGVLGQVLDRLAIHFENVSSLSDKVKAALSYPVLVVATA 177 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 + T+V G + + ++ V Sbjct: 178 ILCLVLMMTMVLPVFEGMLQDVNASLPFITVVVV 211 Score = 34.7 bits (78), Expect = 5.3, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 42/133 (31%), Gaps = 7/133 (5%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + + +G+PV ++ ++ ++ + R + G S++ + Sbjct: 267 LARFCRTLSTLLYSGIPVLASLHIVKETIGNEIIIKAVSRTCDCIEKGESIAVPLKESGF 326 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + P + + G L E L + IL + +E I G Sbjct: 327 FPP------LLIHMITVGEETGALGELLEKAAAILDREIETTVTNMSSMLEPLLVLIIGG 380 Query: 135 SLPFCVSTLVYFT 147 + F +++ Sbjct: 381 IVGFIFISVLLPV 393 >gi|125719093|ref|YP_001036226.1| general secretory pathway protein F [Streptococcus sanguinis SK36] gi|125499010|gb|ABN45676.1| General secretory pathway protein F, putative [Streptococcus sanguinis SK36] Length = 408 Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 51/174 (29%), Gaps = 10/174 (5%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 L D + + +G+P+++AV ++ Q+ +VI + Sbjct: 57 KKIKLKDISLFCKQMSVMLNSGIPLNNAVDILEQQTDAKNLKASLKVISKGLKEGN---- 112 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + G L E L +S +++ + Sbjct: 113 QLSKALIEQNGLFPDLLIRMVQAGEKTGKLDEVLERMSEHYNKELKTSRQIRGAMIYPAV 172 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGIMVM 179 A++ + L+Y P + + L + +AA+ + + Sbjct: 173 LAFLAVAATLV---LLYVVIPNFSGIFEQSGVALPLPTRIVLAASNFVQSYWYI 223 Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 37/130 (28%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ +A+ +++ V + R+ L + Sbjct: 270 FASTLATLTSAGIPLVEAIDSAAATTNNAVVIDKLRIANE-----GLQKGERLTGMLTST 324 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G+L L S + K +E ++ + Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLNKTSDFYEEELEAAIKQLLSLLEPAMIIFMGVIIGG 384 Query: 139 CVSTLVYFTS 148 V++++ Sbjct: 385 IVASVMLPMF 394 >gi|163816763|ref|ZP_02208126.1| hypothetical protein COPEUT_02953 [Coprococcus eutactus ATCC 27759] gi|158448020|gb|EDP25015.1| hypothetical protein COPEUT_02953 [Coprococcus eutactus ATCC 27759] Length = 403 Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 21/177 (11%), Positives = 53/177 (29%), Gaps = 6/177 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLS 66 + D ++AG+ + A+ ++ Q + +R + G +L+ Sbjct: 56 KKKVKSRDLGVFCKQFSAVIKAGVTIISALELMGDQIENKTLRKAIQDARTYVEKGGTLA 115 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ P + ++ GNL L L + +K++ Sbjct: 116 DAFRVNPDVFPP-----IMINMVAAGEMSGNLEICLDRLVEHFEKDNALTSKIKGAMTYP 170 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 ++ + V V + + +AAA + + ++I Sbjct: 171 IVVLIVMVIVIIVVLVAVIPNFASMFEDMGTQLPLATRIMMAAADFVKYKWWLLIII 227 Score = 38.9 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 14/139 (10%), Positives = 48/139 (34%), Gaps = 10/139 (7%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+ + DAV + + + + + +S+ + + Sbjct: 270 FARTMSTLMASGISMIDAVEQVAKMMDNKIIRDGL-----MDAKVQVSKGVPLSKPLKDM 324 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + ++ + G++ E L+ ++ + +ME II + Sbjct: 325 EMLPPMLSAMTKIGEETGDIEEMLSKVADYYDEEVEAATNALTSAMEP-----IIMVILA 379 Query: 139 CVSTLVYFTSPGYMNVLIN 157 C+ ++ G + + + Sbjct: 380 CIVGMIVAAVYGPIMSMYD 398 >gi|309785194|ref|ZP_07679825.1| general secretion pathway protein F [Shigella dysenteriae 1617] gi|308926314|gb|EFP71790.1| general secretion pathway protein F [Shigella dysenteriae 1617] Length = 399 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V+A +P+ + + QS V+S + G +LS+S+ Sbjct: 68 DLALFTCQLATLVQAAIPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHP 127 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G+L L L+ R+ +K+++ + + Sbjct: 128 R-----VFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 S+ + V + L + L+ ++ A G+ Sbjct: 183 TSVVTILLAAVVPKIIEQFDHLGHALPATTRALIAMSDALQASGVYW 229 >gi|148927986|ref|ZP_01811385.1| type II secretion system protein [candidate division TM7 genomosp. GTL1] gi|147886664|gb|EDK72235.1| type II secretion system protein [candidate division TM7 genomosp. GTL1] Length = 331 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 20/164 (12%), Positives = 57/164 (34%), Gaps = 11/164 (6%) Query: 26 SVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFF 84 AG+P+ ++ + + + +R V + G +L++++++ + Sbjct: 1 MTGAGVPLLRSLNALQAHTENEALRKVLASVAKEVQAGSTLTDALAKHPEA-----FNDI 55 Query: 85 STVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144 + + G L E L L+ +++ KV++ +I F + V Sbjct: 56 YVNMVRAGEAAGILDEILKRLALQQEKNASIRKKVKSAMTYPLILLFITLVSFFGLMLFV 115 Query: 145 YFTSPGYMNVLINDP-----RGHMLLGVAAAFMLIGIMVMRLMI 183 + L ++LG++ +++ ++ Sbjct: 116 VPQIGKIVEDLSAPGTELPVLTQIMLGISGFMQQFWYLIIIAVV 159 >gi|15642869|ref|NP_227910.1| general secretion pathway protein F, putative [Thermotoga maritima MSB8] gi|4980584|gb|AAD35188.1|AE001696_2 general secretion pathway protein F, putative [Thermotoga maritima MSB8] Length = 399 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 56/183 (30%), Gaps = 22/183 (12%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + AG+ + +A+ ++ Q+ S R + G SL+E+ + Sbjct: 61 EIATFCRQLSIMISAGIRIKEALNILARQTVFSRRFRKVILEIALNVETGDSLAEAFRKT 120 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + GG L L + K ++ +V++ + Sbjct: 121 G------VFDNVLISMLEAGEEGGVLDRTLKRAADFYESIKRLQDEVKSAMAYPLFVLFF 174 Query: 133 IGSLPFCVSTLV-----------YFTSPGYMNVLINDPR---GHMLLGVAAAFMLIGIMV 178 + +S + SP ++L + V ++ GI V Sbjct: 175 AVVIVLVISFYILPNLVRAFGTSIPLSPTIRSLLKANEFLSENWPWFSVLVTGIIAGIFV 234 Query: 179 MRL 181 + Sbjct: 235 LMK 237 >gi|170721363|ref|YP_001749051.1| general secretion pathway protein F [Pseudomonas putida W619] gi|169759366|gb|ACA72682.1| general secretion pathway protein F [Pseudomonas putida W619] Length = 399 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 63/165 (38%), Gaps = 11/165 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + + AG P+ A+ ++ ++ RV E GL LS+++ Sbjct: 62 ELITITQQLTTLLSAGQPLDRALGTVLKNVRRPAAKAVLERVREQVKAGLPLSQALEEHP 121 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S F T + + GG L LA L+ L ++ +V + +++ Sbjct: 122 -----GSFSPFYTSLVRAGEAGGVLEVTLAQLAGYLEQSHKLRGEVINALIYPA---FLV 173 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + ++ L+ + P ++ + + G + V A + +G V Sbjct: 174 IGVVGSLALLLAYVVPQFVPIFQD--LGVPIPLVTRAVLAMGEFV 216 >gi|157376160|ref|YP_001474760.1| type II secretion system protein [Shewanella sediminis HAW-EB3] gi|157318534|gb|ABV37632.1| type II secretion system protein [Shewanella sediminis HAW-EB3] Length = 403 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 61/178 (34%), Gaps = 28/178 (15%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +++G+ + A++V+ S + +++ G SLSE++++ + Sbjct: 74 LSLLLQSGVKIDKALSVLARTKSGTALADLLQKLSNDVRKGQSLSEAMAKHPK-----VF 128 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + GNL E A L++ L+ RK +K+K+ + + + Sbjct: 129 DNLYINLVTIGESSGNLVEVFAGLAQDLKYRKELKSKITQAIVYPSVILLVCICSVLFIF 188 Query: 142 TLVYFTSPGYMNVLINDPRGHML------------------LGVAAAFMLIGIMVMRL 181 V + V+ D + L V A + G M Sbjct: 189 NFVVPK----LTVMFADAAELPIYTEILLGVSDWIQSYQIHLFVVVAAIAFGFRWMMQ 242 >gi|149178117|ref|ZP_01856712.1| type 4 fimbrial assembly protein pilC [Planctomyces maris DSM 8797] gi|148843037|gb|EDL57405.1| type 4 fimbrial assembly protein pilC [Planctomyces maris DSM 8797] Length = 402 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 18/181 (9%), Positives = 56/181 (30%), Gaps = 12/181 (6%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSL 65 +R + +++G+P+ ++ ++ Q ++ ++ V G L Sbjct: 57 RRVRA--RYLSIFYTQLADLLKSGVPLLRSLELLNKQSTNPSLKQVLEEVRAEVADGTRL 114 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + ++ + + S + + + GG L + L ++ ++ +K +V + Sbjct: 115 AVAMGQHPK-----VFSELAVSMVRAGEEGGFLEDVLKRIASFTDHQEELKNRVVGAMIY 169 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP----RGHMLLGVAAAFMLIGIMVMRL 181 + + + LLG +A ++ Sbjct: 170 PAFLTTFGTVIVSFLLVYFVPKFEPIFARMSERGELPWATTTLLGFSAFMQSYWFIIFFS 229 Query: 182 M 182 + Sbjct: 230 I 230 Score = 35.5 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 14/136 (10%), Positives = 40/136 (29%), Gaps = 5/136 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 I+ + G+P+ ++ I ++ + + S + Sbjct: 268 AIARFCRILGTLLANGVPILQSL-RIAKDAAGNKVISKSIGEAAESISAGKSIAQPFASS 326 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 +E + + NL + L +++ + + N K + +E + Sbjct: 327 GQFPEE----VVEMIAVGEEANNLEQVLIDIADNMERQTNRKLDMFVRMLEPLMLLLMAA 382 Query: 135 SLPFCVSTLVYFTSPG 150 + F + L+ Sbjct: 383 VVVFVMLALLLPVFQS 398 >gi|223936164|ref|ZP_03628077.1| type II secretion system protein [bacterium Ellin514] gi|223895026|gb|EEF61474.1| type II secretion system protein [bacterium Ellin514] Length = 452 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 29/195 (14%), Positives = 63/195 (32%), Gaps = 22/195 (11%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLP-VSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 R + ++ AG+P + + +++ ++ V + G + S Sbjct: 95 RARVKTKQLCIFTRQLSTALDAGMPLLRCLRLLEEQETNPSFKNIITGVGSSIEGGCTFS 154 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++++ R + + +L G+L L LS + +K KV A Sbjct: 155 EALAQHPR-----VFNHLYLSMVRAGELSGSLEITLKRLSDFTEKTEKIKRKVIAALFYP 209 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLI----------------NDPRGHMLLGVAAA 170 A + + + V ++ + R H +L A A Sbjct: 210 AAVISVATGVMGIMLLYVIPKFKAVFEGMMNGKPLPAFTRLVLGISDSIRSHFVLTAAIA 269 Query: 171 FMLIGIMVMRLMINF 185 + GI+++ L Sbjct: 270 AAVYGILLLSLRTRV 284 >gi|260768630|ref|ZP_05877564.1| type II secretion system protein [Vibrio furnissii CIP 102972] gi|260616660|gb|EEX41845.1| type II secretion system protein [Vibrio furnissii CIP 102972] Length = 296 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 20/147 (13%), Positives = 56/147 (38%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 ++ +R ++ A+ ++ + GL + + ++S + + +I Sbjct: 136 IRMQANRRAKIIDEEMLTAVHMMAILWQVGLSLERLLKTYHQEASDLTPEMNKDIALIIA 195 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + M +++S S+ GG L ++ +L+ +L +RK + Sbjct: 196 RIDAGQNREWVFRDMATLTLSTGFQDLLSMLSQGSETGGGLKKSFQSLADLLYERKRVAL 255 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + + M K S ++ + + ++ Sbjct: 256 QEKVTKMSGKISVTMMALMFPALFIIL 282 >gi|103485812|ref|YP_615373.1| general secretion pathway protein F [Sphingopyxis alaskensis RB2256] gi|98975889|gb|ABF52040.1| General secretion pathway protein F [Sphingopyxis alaskensis RB2256] Length = 405 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 19/183 (10%), Positives = 48/183 (26%), Gaps = 6/183 (3%) Query: 2 KHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L+ R + + + P+ +A+ + QS +E R + Sbjct: 53 RSLLAFRKDRLGRKELALFTRQLATLAEV-APLEEALRTLTRQSE----AESARGVIADV 107 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L + + G+L+ LA L+ +L + ++ K+ Sbjct: 108 HAGLLEGRRLADAMARQPTSFPPLYRAMVAAGETTGSLTVILARLADLLERQAEVRGKLI 167 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A A + + + V + + + Sbjct: 168 AALAYPIVLAVVAIGVVAALMIFVVPRVVEQFTDTGQRLPFLTRAVIGVSSFAANWWWLI 227 Query: 181 LMI 183 ++ Sbjct: 228 ALL 230 >gi|262163781|ref|ZP_06031521.1| general secretion pathway protein F [Vibrio mimicus VM223] gi|262027761|gb|EEY46426.1| general secretion pathway protein F [Vibrio mimicus VM223] Length = 393 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 60/160 (37%), Gaps = 6/160 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71 + L + +G+P+ + ++ S+D + +R+ G SLSE+I+ Sbjct: 55 REVLITTLRELATLRESGMPLDQCINSLLENSTDRQMALVLKRLHSDIESGSSLSEAIAA 114 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P + + + + G L EAL ++S + + + ++V++ Sbjct: 115 QPDSFPY-----YVSSMLRLGEASGQLGEALFSISERIEREEKLVSEVKSALTYPAFLLI 169 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 + + F + V + I+ LL ++A Sbjct: 170 VCVATIFFMFLYVIPNFETMVQEGIDAGALGNLLAISAFL 209 >gi|258651872|ref|YP_003201028.1| type II secretion system protein [Nakamurella multipartita DSM 44233] gi|258555097|gb|ACV78039.1| type II secretion system protein [Nakamurella multipartita DSM 44233] Length = 311 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 64/169 (37%), Gaps = 13/169 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + K+ + + +FP +++ SV AG + A+ + + P+ S+ V+ Sbjct: 155 LTQAVSKQEEEIIAEFPVIAEMLALSVTAGESPTGALDRVTKLAHGPLVSQLSGVLAETR 214 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +++ + L+ ++ F ++V + G L++ L + +R + Sbjct: 215 AGTPFLTALTHLRDRTRLEPLARFLDGMAVAIERGTPLADVLRAQAADVRALS------K 268 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 +E+ I +P L + +L G + + A Sbjct: 269 RQLLESGGRKEIAMMVPVVFLVL-------PITILFALYPGLLAITTVA 310 >gi|319941897|ref|ZP_08016218.1| hypothetical protein HMPREF9464_01437 [Sutterella wadsworthensis 3_1_45B] gi|319804550|gb|EFW01420.1| hypothetical protein HMPREF9464_01437 [Sutterella wadsworthensis 3_1_45B] Length = 297 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 62/142 (43%), Gaps = 2/142 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR--RVIET 58 + L ++R + P A+D++ + G+ + +A + + + + R+ Sbjct: 140 LSELAERRQNRIRLFIPKAVDLLTICMSCGMSLEEAFDRVASEIARRAPEVAKEFRMTRY 199 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + L ++ + ++ R+ ++E+ + + Q G L+EAL +++ R + + + Sbjct: 200 EMLVVNRTVALKRLEARSGVREMKILANSLLQSIQYGTPLTEALQSIAAEARAGQLSELE 259 Query: 119 VQALSMEAKASAWIIGSLPFCV 140 +A + A +I + F V Sbjct: 260 QKAGRISAVIGVPLIVLVLFPV 281 >gi|317489334|ref|ZP_07947848.1| hypothetical protein HMPREF1023_01547 [Eggerthella sp. 1_3_56FAA] gi|316911579|gb|EFV33174.1| hypothetical protein HMPREF1023_01547 [Eggerthella sp. 1_3_56FAA] Length = 350 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 21/162 (12%), Positives = 55/162 (33%), Gaps = 8/162 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+ + +AV ++ D + V + +G L+ ++ Sbjct: 14 FCESVAVMHSAGIQMDEAVFLLGENMEDAAFKRACDDVYKELIVGKPLALAMDDSG---- 69 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L L +L+R + + AK++ A ++ ++ Sbjct: 70 --CLPSHVVDMVGAGEHAGRLENVLWSLARYYDEEDRLYAKIKNAIAYPAALLCVMSAIL 127 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ + L + G A ++IG + + Sbjct: 128 LFTVIVILPVFVDVYHGLTGNLTAGS-FGYVNASIIIGWIAL 168 >gi|254496953|ref|ZP_05109790.1| type II secretory pathway protein LspF [Legionella drancourtii LLAP12] gi|254353808|gb|EET12506.1| type II secretory pathway protein LspF [Legionella drancourtii LLAP12] Length = 402 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 21/157 (13%), Positives = 46/157 (29%), Gaps = 7/157 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D + + AG+PV +++ + Q+ E + L Sbjct: 63 ADLSLFTRQLATLLAAGIPVEESLRGVSEQTEKDKVRELIIGVR----AKVLEGYGLAQA 118 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 Q + G+L L L+ +++ + KVQ + + Sbjct: 119 MSQYAQAFPELYRATVGSGEQTGHLDAVLEKLADYTENQQQTRQKVQQALIYPILMILVS 178 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + +S L+ F P + V + + + Sbjct: 179 TGI---ISFLLSFVVPKIIEVFTSSGQTLPEMTEILI 212 >gi|134302125|ref|YP_001122094.1| Type IV pili polytopic inner membrane protein [Francisella tularensis subsp. tularensis WY96-3418] gi|134049902|gb|ABO46973.1| type II secretion system protein F/Type IV pili polytopic inner membrane protein [Francisella tularensis subsp. tularensis WY96-3418] Length = 409 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 20/155 (12%), Positives = 48/155 (30%), Gaps = 10/155 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVA--VIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 D + +AG+P+ + ++ ++ + + G S S+++ Sbjct: 69 QDITEMTRQLAIMTKAGIPIIKSFEVFIMGICKHPRLKILAIEIKQAIEGGESFSKALRN 128 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + GNL L ++ +++K KV+ Sbjct: 129 FPKI-----FDKLYVGLITAGEESGNLDLMLNKIADQREALQSIKKKVKKALSYPIIVCI 183 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 I L+ F P + + IN + + Sbjct: 184 IAAG---VTGILLTFAVPAFSAMFINSGKPLPAIT 215 Score = 33.9 bits (76), Expect = 9.2, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 49/149 (32%), Gaps = 15/149 (10%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESIS 70 F + +V++G+ ++ A+ ++ + + ++ + G S E+I Sbjct: 272 FKSSLARFASTLEITVQSGMSLTRALDMVSLATGNAKYDQAALDIKKSINEGASFKEAIV 331 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 F + + G L L NL+R+ ++ + ++ S+ Sbjct: 332 ETGN------FPFLVEQMIAVGEESGALETMLGNLNRVYQEEVD--------TLVGSLSS 377 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDP 159 + + + +V F + Sbjct: 378 MLEPLIMIVLGGVVGFLVVSMYMPMFQMG 406 >gi|83859852|ref|ZP_00953372.1| probable type II secretion system protein [Oceanicaulis alexandrii HTCC2633] gi|83852211|gb|EAP90065.1| probable type II secretion system protein [Oceanicaulis alexandrii HTCC2633] Length = 418 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 23/165 (13%), Positives = 54/165 (32%), Gaps = 11/165 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + +RAG P+ A ++ + + + + G LSE++SR Sbjct: 83 FMRQLATLLRAGAPLLGAFDSLLEEEPCRELSEQMNAIRSDLRAGGRLSEALSR-----H 137 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + +++ + + G+L L ++ + +V+ A Sbjct: 138 MPTLPDYASRLVELGEATGSLDVRLNEVAAQMERDLTAAEEVRNALSYPAFLAVAGFGAV 197 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + F P + +L N L + + IG + Sbjct: 198 IFIF---MFVVPRFSTLLDNSDAEIPAL--SRVVLAIGTFFNAHI 237 Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 46/132 (34%), Gaps = 7/132 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 I ++ AG + DA+A+ S+ R + + G L ++ R Sbjct: 288 RITGTALAAGAGLIDALALAEKGVMSERRRQGLEQARRSVRSGDPLESALRAHTR----- 342 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + +L G LSE L ++ AK E A A+I + Sbjct: 343 -TDAMTLNLVRTGRLSGALSEMLIFVAEAGEQDAKNLAKRLTALAEPMAIAFIASIIGLI 401 Query: 140 VSTLVYFTSPGY 151 V +LV S Y Sbjct: 402 VISLVLAMSSLY 413 >gi|260587079|ref|ZP_05852992.1| putative bacterial type II secretion system protein F domain protein [Blautia hansenii DSM 20583] gi|260542569|gb|EEX23138.1| putative bacterial type II secretion system protein F domain protein [Blautia hansenii DSM 20583] Length = 402 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 53/158 (33%), Gaps = 14/158 (8%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG----------QSSDPVRSEFRRVIET 58 + D+P+ + +V +RAG + A+ I E R + Sbjct: 248 RKEMQRDYPDIVQKLVLFLRAGFTIRKAMEKIADGYLRSREKYHAKERSAYEEIVRTCKE 307 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKA 117 G+ +E+ R + + S ++ + NL E L + D + A Sbjct: 308 MQGGIYEAEAYERFGTRCGISQYKILSVLLVQNLKKGNQNLLELLEREEAVAEDERKRSA 367 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 KV+ K ++ L + L+ P + + L Sbjct: 368 KVRGEEASTKLLLPMVLQLIVVLMILMI---PAFFSFL 402 >gi|124027968|ref|YP_001013288.1| hypothetical protein Hbut_1100 [Hyperthermus butylicus DSM 5456] gi|123978662|gb|ABM80943.1| conserved crenarchaeal protein [Hyperthermus butylicus DSM 5456] Length = 621 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 27/193 (13%), Positives = 65/193 (33%), Gaps = 16/193 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I ++ K P + R GL ++ V+ + + + RR+ Sbjct: 381 VYMRIARKEKKINRSLPAFFRDLSEVRRTGLSPERSIIVLSERDYGELSNVIRRIAAALS 440 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRI----LRDRKNMK 116 +GL + + ++ + + +GG + +L+R + +N+K Sbjct: 441 MGLHVERAFRTAIKGYKSWILRVTMRFLVDAIDVGGGSPTTIDSLARFVSTLIELNENLK 500 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVY------------FTSPGYMNVLINDPRGHML 164 +++ + A I+ ++ ++ G L G +L Sbjct: 501 RRLKPFIIMPYFGAVIVAVASILTLAMLVNAIAATGLGTTQYSFGGLQVSLSPAQIGKLL 560 Query: 165 LGVAAAFMLIGIM 177 L + A +L G + Sbjct: 561 LLASIASILNGWL 573 Score = 39.3 bits (90), Expect = 0.23, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 62/183 (33%), Gaps = 7/183 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLG 62 R + +FP + G+P + + + +R E RR++ + Sbjct: 127 KASSRAERVDMEFPFFAAYMTAMAYGGVPPEKLIERLAEIRMFRALREEARRILRDVKIF 186 Query: 63 L-----SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +L + + + + TVI + L + + + +A Sbjct: 187 GKNILSALEHNALHHPSRLYRDFMLGYLTVIRTGGNVHHYLEVRTQEVIQARMEDLRNRA 246 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL-GVAAAFMLIGI 176 L +EA + ++G+L F + +V + + G +L + + I I Sbjct: 247 DRVGLIVEAYVAVAVLGTLSFYIFFIVSGLIGRAVGGGLGGTTGLILYSFIVLPLITIAI 306 Query: 177 MVM 179 +++ Sbjct: 307 LML 309 >gi|325294584|ref|YP_004281098.1| type II secretion system F domain [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065032|gb|ADY73039.1| Type II secretion system F domain [Desulfurobacterium thermolithotrophum DSM 11699] Length = 402 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 21/165 (12%), Positives = 52/165 (31%), Gaps = 7/165 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRM 72 + + + AG+P+ +A+ + + + +++ G SLSES+ Sbjct: 64 QELAVFFRTLATLLDAGIPLIEAIESLSENFKEDRKKIFMTKIVNNLREGKSLSESLKIA 123 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P + GG L ++L ++ IL R+ +K+ + + + Sbjct: 124 GIKDP------VIVSFVSSGEKGGTLVQSLEIIASILEKREELKSTIINALIYPVVLLVV 177 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + V + + + + I Sbjct: 178 AIGVVVFMMLSVIPKIVSIYTSMKISLPLSTKITLFISNGFINYY 222 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 57/161 (35%), Gaps = 19/161 (11%) Query: 3 HLIKKRTAKFLD---------------DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP 47 L K++ +F + + + ++AG+P+ DA+ + Sbjct: 238 FLEKRKKREFDKFKLRLPVFGKLFLYIELNRFFETLSSLLKAGIPIVDAMISATHTVKNE 297 Query: 48 VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR 107 E R ++ L S + ++E+ + + + G L+E L+ +S+ Sbjct: 298 YLKE-RLLLINNELKKGKSLATLFSKE---IKELPTVALQLIKAGEQSGRLAELLSKVSK 353 Query: 108 ILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 LR+ + K +E I + F V +L+ Sbjct: 354 FLRNEVEIYTKNLTSMLEPAIMIIIGLIVGFIVFSLLLPIV 394 >gi|251772571|gb|EES53136.1| putative general secretion pathway protein F [Leptospirillum ferrodiazotrophum] Length = 407 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 46/147 (31%), Gaps = 6/147 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D + V AG+P+ DA+ ++ Q D P+ RV + G LS ++ + Sbjct: 71 DLSVFTRQMAILVGAGVPIVDALGAVLDQGPDTPMARVASRVRDLVKEGRPLSAAMGEIP 130 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + + G L L L+ ++ + + KV + Sbjct: 131 A-----VFSGIYLNMVRAGEESGTLEIMLDRLADLMEKQVGTRRKVLGALFYPLLLMGVG 185 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR 160 + + +V L Sbjct: 186 LLMVVFLLLVVMPRITAVFEGLKATLP 212 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 7/135 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + +G P+ A+ V +S PV+ R G SLS+S+ Sbjct: 272 QVARFSRTLGVLLASGTPLQKALEVAEAVVTSGPVKEAVARSRVEIAEGRSLSQSLRE-- 329 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + + G L E L +++ + +E +I Sbjct: 330 ----SKVFPPLAVHMIAVGERTGKLEELLLKVAQGYETEVDQTVATLTSLIEPVMILFIG 385 Query: 134 GSLPFCVSTLVYFTS 148 G + F V +++ Sbjct: 386 GLVLFMVLSVLLPIF 400 >gi|171913110|ref|ZP_02928580.1| type II secretion system protein [Verrucomicrobium spinosum DSM 4136] Length = 411 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 63/171 (36%), Gaps = 12/171 (7%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71 + + + GL + A+ V+ Q S +R R+ E G + S+++ + Sbjct: 68 RAQLILFTEELADLMDGGLQLEQALRVMHERQESPVLRKVSGRIREQLREGATFSKALLQ 127 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 ++ ++ G+L + L LS + +++++V A + + Sbjct: 128 AS-----PSFDEMYCNLATAGEVSGSLPQILRRLSASITQMHDLQSRVVAALVYPA---F 179 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLIND---PRGHMLLGVAAAFMLIGIMVM 179 + G+L + PG++++L M + + ++ + Sbjct: 180 MFGALIMLLIVFSTVLLPGFVDMLSKSRTKLPFVMEMLGTFSDLVKHWWWL 230 >gi|296278289|pdb|2WHN|A Chain A, N-Terminal Domain From The Pilc Type Iv Pilus Biogenesis Protein gi|296278290|pdb|2WHN|B Chain B, N-Terminal Domain From The Pilc Type Iv Pilus Biogenesis Protein Length = 116 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 15/109 (13%), Positives = 37/109 (33%), Gaps = 5/109 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D + + AGL + A+A++ Q+ + E + + + ++ Sbjct: 13 KDLAIFSRQLATMLGAGLTLLQALAILERQTENRKFREILKQVR-----TDVEGGMAFSE 67 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + S + + G L L L+ L ++ K+++ Sbjct: 68 ALSKHKIFSRLYVNLVRAGETSGGLDLILDRLASFLEKELELRGKIRSA 116 >gi|288931798|ref|YP_003435858.1| type II secretion system F domain protein [Ferroglobus placidus DSM 10642] gi|288894046|gb|ADC65583.1| Type II secretion system F domain protein [Ferroglobus placidus DSM 10642] Length = 640 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 21/159 (13%), Positives = 63/159 (39%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L K K + P + + +G+ + + + ++ + + EF + + LG Sbjct: 423 LKNKILRKAEEKLPEFFEELAMLNESGVSIFEGIKLVAKSEAGILSKEFEGISRSVELGE 482 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 +++S+S++V + + + + ++ +A +SR + + + K+++ Sbjct: 483 PITKSLSKLVVRIKSDIFAKAVPIAVKALETSTSIKDAFITVSRYVDSELSFRKKLKSNL 542 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162 M A ++ + V+ L+ + + + G Sbjct: 543 MPYVAIIYLTVLVFLFVAYLLISKFLVTFSGMSVNFMGI 581 >gi|332363540|gb|EGJ41321.1| bacterial type II secretion system protein F [Streptococcus sanguinis SK1059] Length = 408 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 18/162 (11%), Positives = 43/162 (26%), Gaps = 7/162 (4%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 L D + + +G+P+++AV ++ Q++ +++ S Sbjct: 57 KKIKLKDISLFCKQMSVMLESGIPLNNAVDILEQQATSKNLKSSLKIVSKSLKEGS---- 112 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + G L E L +S +++ + Sbjct: 113 QLSKAMLDQEGMFPDLLIRMVQAGEKTGKLDEVLEKMSEHYNKELKTSRQIRGAMIYPA- 171 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + V L+Y P + + L Sbjct: 172 --VLAFLAVGAVLALLYIVIPSFSGIFEQSGMAMPLPTRIVL 211 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ +A+ +++ V E ++ L + Sbjct: 270 FASTLAILTSAGIPLVEAIESAAATTNNAVVIEKMKIANE-----GLQKGERLTGMITST 324 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G+L L S + K +E + + Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLVKTSDYYEEELETAIKQLLSLLEPAMIIVMGVIIGG 384 Query: 139 CVSTLVYFTS 148 V++++ Sbjct: 385 IVASVMLPMF 394 >gi|299139220|ref|ZP_07032396.1| Type II secretion system F domain protein [Acidobacterium sp. MP5ACTX8] gi|298598900|gb|EFI55062.1| Type II secretion system F domain protein [Acidobacterium sp. MP5ACTX8] Length = 396 Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 57/175 (32%), Gaps = 20/175 (11%) Query: 21 DIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + +RAGLP+ ++ ++ Q + +++ V G S+S + Sbjct: 66 QQFLTLIRAGLPILSSLDLLAKRQKEESFQAQLEDVTSRIKTGESISSAFEAQG------ 119 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 T + + GNL E L R + K++A + ++ L Sbjct: 120 SFPLVYTTTLLAGERSGNLEEVLQRFLDFQRVSLTFRKKLKASLIYPAFLIVMVIGLFIF 179 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAA-------------AFMLIGIMVMRL 181 + T V + L L +A +LIG +++R Sbjct: 180 LITFVVPRFAQLYDQLGTKLPALTLFMLALGQDVQHYGLYILPVLILIGYLLVRW 234 >gi|319956473|ref|YP_004167736.1| type II secretion system f domain protein [Nitratifractor salsuginis DSM 16511] gi|319418877|gb|ADV45987.1| Type II secretion system F domain protein [Nitratifractor salsuginis DSM 16511] Length = 416 Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 21/142 (14%), Positives = 49/142 (34%), Gaps = 6/142 (4%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + I AG+P+ D + + +S+ +R + + + G S+S++I Sbjct: 77 IRQIAVMTDAGIPIHDTLEDVAANTSNKRLREIYHNIAADINAGKSMSQAIKPYSEEFGH 136 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + ++ + GN E+ L+ IL + ++ AK + + + Sbjct: 137 -----VAIAMTNLGEKTGNFPESYHKLADILENIRDNTAKFKKALRYPLITLTAMAIAFV 191 Query: 139 CVSTLVYFTSPGYMNVLINDPR 160 + LV + Sbjct: 192 ILIMLVVPKFRAIFEEFHAELP 213 >gi|56708210|ref|YP_170106.1| Type IV pili polytopic inner membrane protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110670681|ref|YP_667238.1| Type IV pili polytopic inner membrane protein [Francisella tularensis subsp. tularensis FSC198] gi|187931947|ref|YP_001891932.1| Type IV pili polytopic inner membrane protein [Francisella tularensis subsp. mediasiatica FSC147] gi|224457315|ref|ZP_03665788.1| Type IV pili polytopic inner membrane protein [Francisella tularensis subsp. tularensis MA00-2987] gi|254370698|ref|ZP_04986703.1| type IV pili polytopic inner membrane protein [Francisella tularensis subsp. tularensis FSC033] gi|254875024|ref|ZP_05247734.1| type IV pilus polytopic inner membrane protein [Francisella tularensis subsp. tularensis MA00-2987] gi|56604702|emb|CAG45767.1| Type IV pili polytopic inner membrane protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110321014|emb|CAL09150.1| Type IV pili polytopic inner membrane protein [Francisella tularensis subsp. tularensis FSC198] gi|151568941|gb|EDN34595.1| type IV pili polytopic inner membrane protein [Francisella tularensis subsp. tularensis FSC033] gi|187712856|gb|ACD31153.1| Type IV pili polytopic inner membrane protein [Francisella tularensis subsp. mediasiatica FSC147] gi|254841023|gb|EET19459.1| type IV pilus polytopic inner membrane protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282159429|gb|ADA78820.1| Type IV pili polytopic inner membrane protein [Francisella tularensis subsp. tularensis NE061598] Length = 409 Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 20/155 (12%), Positives = 48/155 (30%), Gaps = 10/155 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVA--VIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 D + +AG+P+ + ++ ++ + + G S S+++ Sbjct: 69 QDITEMTRQLAIMTKAGIPIIKSFEVFIMGICKHPRLKILAIEIKQAIEGGESFSKALRN 128 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + GNL L ++ +++K KV+ Sbjct: 129 FPKI-----FDKLYVGLITAGEESGNLDLMLNKIADQREALQSIKKKVKKALSYPIIVCI 183 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 I L+ F P + + IN + + Sbjct: 184 IAAG---VTGILLTFAVPAFSAMFINSGKPLPAIT 215 >gi|290559841|gb|EFD93164.1| type II secretion system protein [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 356 Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 61/177 (34%), Gaps = 1/177 (0%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 K P+ L ++ ++RAG+ ++ + + + + G + E++ Sbjct: 111 KIEKVLPDMLLLMAANLRAGMIPENSFISSMKPEFGKLNNLLNKAAIETQAGKTFPEALL 170 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 M + +IS + G L L NL+ L +++++ ++A Sbjct: 171 EMNDLTSSEFFKDSVRIISESIRSGAELHLILENLASNLLQNESIRSDMRAQVKSYSLFI 230 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 +I +L + V G M+ + G +G+ + N V Sbjct: 231 FIAATLAGPLLYGVSSFLIGIMDSVGASTAGSTS-ATNLPSGTLGLFSGFSLPNISV 286 >gi|295098607|emb|CBK87697.1| Type II secretory pathway, component PulF [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 394 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 22/172 (12%), Positives = 50/172 (29%), Gaps = 7/172 (4%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 ++R + + + ++AGL +S ++ ++ Q + Sbjct: 46 KRCQQRQRWQVQHCYDIFRQLATLLQAGLTLSQSLHMLAEQHPLQHWQALLHSLADDLS- 104 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + S + +L G L L++ + ++ + AKV+ Sbjct: 105 ---EGCALSEAMKKWPEVFSPLYVSMVKTGELTGKLEACCRQLAQQQKSQQQLSAKVKKA 161 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 I+ F V +V P + + LL A + Sbjct: 162 LRYPL---IILTLAVFVVLAMVTLVLPEFAAIYKTFNTPLPLLTQAVMGLAA 210 >gi|269986708|gb|EEZ92988.1| type II secretion system protein [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 298 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 71/178 (39%), Gaps = 6/178 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K KRT + A I+ V +G+PV +A+ + + V EF+ IE Sbjct: 112 KLQAVKRTKLIEEQVVFATREIMIKVGSGVPVFNALLDVANGNYGVVSDEFKEAIEEIES 171 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ +++ + R +P Q + ++ + G +++ L+ ++ +L ++ K A Sbjct: 172 GVPQEDALDHLARRVPSQSLRRTIDIMLNAIKSGSDVAGTLSLINDMLIKKQQSDMKSYA 231 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL------INDPRGHMLLGVAAAFML 173 + + A+++ S+ + F G + P ++ + M+ Sbjct: 232 GELTPMSMAYMLISVVMPSLGMSVFIILGSLAHFNTVAIIYIIPPFLLMFQIFFMGMV 289 >gi|283797116|ref|ZP_06346269.1| conserved hypothetical protein [Clostridium sp. M62/1] gi|291075533|gb|EFE12897.1| conserved hypothetical protein [Clostridium sp. M62/1] Length = 309 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 68/185 (36%), Gaps = 2/185 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K + AL +I + + AV + + PV F+ + Sbjct: 120 VKLTASHYKRDVSAELETALSVITTAYLRTEDIVTAVEENIAYLNPPVSKVFQNFLTQIK 179 Query: 61 LGLS-LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 L + ++ M + + + +S +L L + L D +N+ A++ Sbjct: 180 LVNPNVEAALRGMQGRIDNEVFREWCDALSDCQH-DRSLKTTLTPIVAKLSDMRNVNAEL 238 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + L E + I+ L+Y + + +VL++ P G ++L V AA + + + Sbjct: 239 EYLIAEPRKEFLIMVIFVIGNIPLMYMLNKDWYDVLMHTPLGQIILSVTAAVIFVSAGCV 298 Query: 180 RLMIN 184 + Sbjct: 299 VKLTR 303 >gi|110626527|gb|ABG79011.1| TadC [Yersinia ruckeri] Length = 277 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 53/147 (36%), Gaps = 4/147 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--TQHLGLSLSESIS 70 + P +D++ ++AG+ + A+ R + + + L +SI Sbjct: 130 TEAIPLFIDMVAACIQAGMTIESALTHTAKNFESINRDLSMLFNKIMKKSEIIGLEKSIK 189 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + P E+ F + + G + E L LS ++ + + A+ + K + Sbjct: 190 EVSIVAPSTEIKMFCSTLQYSLSFGSTVYEQLNTLSAEIKKMQLLIAEEILSKLSTKLTL 249 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + + L+ SP + + + Sbjct: 250 PLFLFMVIPFIVLI--LSPSILGFIYH 274 >gi|78062901|ref|YP_372809.1| type II secretion system protein [Burkholderia sp. 383] gi|77970786|gb|ABB12165.1| type II secretion system protein [Burkholderia sp. 383] Length = 314 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 59/143 (41%), Gaps = 5/143 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSLSESISRM 72 FP+ALD++V AG ++ + + + P+ E + L ++ +++ Sbjct: 170 FPDALDLLVICTMAGNSLASGIRRVAHELARICPPLADELTVCADELTLSGDVAATLTHF 229 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + +T ++ + G +++AL LSR R + + + +A + K + + Sbjct: 230 AMRVDFTSARSLATTLTQSQRFGTPITQALRTLSRTERTEQIVALEERAAKLAPKITLPM 289 Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155 + + V + P + +L Sbjct: 290 MLFILPTVC--LIAAGPAAIRLL 310 >gi|257092262|ref|YP_003165903.1| type II secretion system protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044786|gb|ACV33974.1| type II secretion system protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 400 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 17/165 (10%), Positives = 49/165 (29%), Gaps = 4/165 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + + VRAG+P+ + + + P E + G Sbjct: 58 RREIIHFCFHLQQLVRAGVPIIEGLTDLRDSLEHPRFREVVASLIESIEGGQ----TLSQ 113 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G L E L +L+ L+ + ++ + + + I Sbjct: 114 AMESHRRVFDRVFISLIRAGETTGRLPEVLHSLNESLKWEDELASQTKKMIAYPAFVSTI 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + F + + ++ + + + +L+ Sbjct: 174 VVGATFFLMVYMVPQLKMFVKNMGQVLPLQTQILFFVSDLLVAWW 218 >gi|332284399|ref|YP_004416310.1| general secretion pathway protein F [Pusillimonas sp. T7-7] gi|330428352|gb|AEC19686.1| general secretion pathway protein F [Pusillimonas sp. T7-7] Length = 402 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 52/149 (34%), Gaps = 9/149 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AGL + A++ + Q+ V V G L E+++ R P Sbjct: 68 LTRQLASLLAAGLTLETALSATLDQAERQHVAHALAAVRADIRAGHRLGEALAARPRDFP 127 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+LS+ + L+ + R ++ K+ + + + + Sbjct: 128 P-----IYRALIDAGEQSGDLSQVMEKLADYIESRGALRNKILTAFIYPIIVSVVSIGI- 181 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 + L+ + P + + + LL Sbjct: 182 --IIFLLSYVVPQVVGAFNHTQQTLPLLT 208 Score = 35.1 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 12/125 (9%), Positives = 32/125 (25%), Gaps = 5/125 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + +G+P+ A+ S+ S + Sbjct: 275 LGILTSSGVPLLAALEASRRTLSNDRLRVAVDEATRHVREGSP-----LAPSLAAQKVFP 329 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + + G + L ++ L + +A +E ++ G + V Sbjct: 330 SLLIHLIGSGERTGEMPAMLERAAKTLANELERRAMTMTALLEPLMILFMGGIVLLIVLA 389 Query: 143 LVYFT 147 ++ Sbjct: 390 VMMPI 394 >gi|170704228|ref|ZP_02894801.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] gi|170130863|gb|EDS99617.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] Length = 255 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 3/131 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRM 72 FP+ALD++V AG ++ V + + P+ E + L ++SE+++ Sbjct: 111 FPDALDLLVICTMAGNSLASGVRRVARELQRICPPLADELTVCADELTLSGNVSEALAHF 170 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + +T ++ + G +++AL LSR R + + + +A + K + + Sbjct: 171 ALRVNFSSARSLATTLTQSQRFGTPITQALRTLSRSERTEQVVALEEKAAKLAPKITVPM 230 Query: 133 IGSLPFCVSTL 143 + + V + Sbjct: 231 MLFILPTVGLI 241 >gi|167587310|ref|ZP_02379698.1| type II secretion system protein [Burkholderia ubonensis Bu] Length = 264 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 58/149 (38%), Gaps = 5/149 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLS 66 +D+ P +D++ GL + ++ V+ + SE G + Sbjct: 110 QAVVDELPLLVDMLRLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEMGIAQRQFAAGRTRE 169 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ R+ +++ ++ + GG + E L LR+ + + + + Sbjct: 170 QSLQRLASGFDNEDLRAIVRLMIQVDKHGGAVQEPLKQFGDRLREARRAMLRERIGRLTV 229 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 K + +I +L + L+ PG ++V+ Sbjct: 230 KMTGVMIVTLLPAL--LIVTAGPGMISVM 256 >gi|223365708|pdb|2VMA|A Chain A, The Three-Dimensional Structure Of The Cytoplasmic Domains Of Epsf From The Type 2 Secretion System Of Vibrio Cholerae gi|223365709|pdb|2VMA|B Chain B, The Three-Dimensional Structure Of The Cytoplasmic Domains Of Epsf From The Type 2 Secretion System Of Vibrio Cholerae Length = 123 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 6/110 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + V++G P+ + + + QS +R+ V G +LS+S+ Sbjct: 13 DLALITRQLATLVQSGXPLEECLRAVAEQSEKPRIRTXLVAVRAKVTEGYTLSDSLGDYP 72 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + G+L L L+ +R+ ++K+Q S Sbjct: 73 -----HVFDELFRSXVAAGEKSGHLDSVLERLADYAENRQKXRSKLQQAS 117 >gi|163803453|ref|ZP_02197326.1| type IV pilin biogenesis protein PilC [Vibrio sp. AND4] gi|159172754|gb|EDP57602.1| type IV pilin biogenesis protein PilC [Vibrio sp. AND4] Length = 407 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/143 (11%), Positives = 42/143 (29%), Gaps = 6/143 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMP 77 I + G+P+ A+ ++ + G +S+++ ++ Sbjct: 72 FTRQITTMLMTGVPIVQALKLVAKSHKKAEMKSTLMSITRAVEAGTPISKAMGTTSKHFD 131 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 T + + GNL + L+ + ++A+V + + + Sbjct: 132 P-----LYTNLIATGEQSGNLPQVFDRLATYREKSEQLRARVAKALIYPTMVILVALGVC 186 Query: 138 FCVSTLVYFTSPGYMNVLINDPR 160 + + T V D Sbjct: 187 YLMLTQVIPEFEKMFVGFGADLP 209 Score = 35.9 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 13/136 (9%), Positives = 36/136 (26%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRM 72 + S +G+P+ A+ S + V G+ + ++ Sbjct: 271 AAIARFSRTLATSFSSGIPILIALKTTSKISGNMYYQLAIEDVYRDTAAGMPMYVAMRN- 329 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G L + L ++ I + + +E ++ Sbjct: 330 -----GNVFPELVWQMVMIGEESGRLDDMLNKIATIYEFEVDSTVDNLSKILEPLLIIFL 384 Query: 133 IGSLPFCVSTLVYFTS 148 + V + Sbjct: 385 GVVIGGLVIAMYLPIF 400 >gi|311899776|dbj|BAJ32184.1| hypothetical protein KSE_64250 [Kitasatospora setae KM-6054] Length = 323 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 22/179 (12%), Positives = 60/179 (33%), Gaps = 4/179 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + + + G+ ++ A+ + + +E + Sbjct: 106 RRIERLE-ALAEWTQRLADVLLLGVGLNQAIMTSRRTAPAALETEITDLAARLQSRWRPE 164 Query: 67 ESISRMVRYMPLQEVSFFSTVIS-VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + + G L+ ALA+++ +R+ + ++A + Sbjct: 165 DALRAFGDQVADSTADKVLAALVLRAGDSGPGLARALADMAESVREEVRQRRAIEADRSK 224 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + + + + V + F + GY G ++LG+ A + I MR + Sbjct: 225 HRTTIRWMVGIILLVVVVGSF-NAGYTAP-YTTTIGQLVLGIVAVAFVAVIAWMRSLAR 281 >gi|169634522|ref|YP_001708258.1| general secretion pathway protein F [Acinetobacter baumannii SDF] gi|169153314|emb|CAP02423.1| general secretion pathway protein F [Acinetobacter baumannii] Length = 401 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 54/163 (33%), Gaps = 11/163 (6%) Query: 9 TAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66 KF D + V A +P+ +A+ + QS V++ V G SL+ Sbjct: 58 QKKFSAYDLALMTRQLSVLVAAAIPLEEALRAVSRQSEKAHVQNLLLLVRSKVLEGHSLA 117 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + + + R+ + G+L L LS +R M+ KVQ + Sbjct: 118 QGMQQSGRFPD------LYIATVAAGERSGHLDLILDQLSDYTENRFAMQKKVQGAMIYP 171 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 + + V L+ + P + + VA Sbjct: 172 IILMLMSFGI---VMGLMTYVVPEIVKTFDQSKDALPWITVAL 211 >gi|254488585|ref|ZP_05101790.1| general secretion pathway protein F [Roseobacter sp. GAI101] gi|214045454|gb|EEB86092.1| general secretion pathway protein F [Roseobacter sp. GAI101] Length = 405 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 17/160 (10%), Positives = 44/160 (27%), Gaps = 7/160 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + AG+ + DA+ + Q+++ + + L Sbjct: 66 RALTVVTRQLATLIGAGVRIEDALKTVADQATNSRVAALMLTLRADV----LDGQGLAPA 121 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 F + G L + + +L+ + R + VQ + + Sbjct: 122 LDSHPHIFGAFYRASVKAGETSGRLGDVMDHLADFVETRSKNRQTVQLALLYPA---ILA 178 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + L+ + P + V + L + + Sbjct: 179 LVSLGVIVALLVYVVPDIVKVFTSRGAELPFLTRSLISVS 218 >gi|146296450|ref|YP_001180221.1| type II secretion system protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410026|gb|ABP67030.1| type II secretion system protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 303 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 23/183 (12%), Positives = 63/183 (34%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQ 59 + ++ R KF F + +R + + + ++ ++ E +++ Sbjct: 114 LDYISTSRRFKFELKFGEFTQSVAIMLRGTPNLMSVLQQAMNEETDSKLKMELEMIVQEV 173 Query: 60 HLGLSLSESISRMVRYMPL-QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G +L +++ + V + I + G +LS+ N +R + D+ + Sbjct: 174 QSGTTLEQALKKFKERNNFSSVVGTWVDSIVFANLSGASLSDVCMNAARKINDKLSRARL 233 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 ++ + K+ I + + F P + G ++L + ++ Sbjct: 234 IKKKTARLKSVMLAIIGIITLTLVFILFFFPEA-KECYSTTGGKIILMFVLSIVIGSTYY 292 Query: 179 MRL 181 M Sbjct: 293 MLK 295 >gi|326383473|ref|ZP_08205160.1| hypothetical protein SCNU_11071 [Gordonia neofelifaecis NRRL B-59395] gi|326197879|gb|EGD55066.1| hypothetical protein SCNU_11071 [Gordonia neofelifaecis NRRL B-59395] Length = 265 Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 64/192 (33%), Gaps = 18/192 (9%) Query: 6 KKRTAKFLDDFPN--------ALDIIVRSVRAGLPVSDAVAVIVG-----QSSDPVRSEF 52 ++R + + AL ++ + G PV A V E Sbjct: 74 RQRRRSCREALADRDSRQLIAALAVMSAELSVGAPVVQACRAAAADLARIDHDGAVGPEL 133 Query: 53 RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112 R+ LG + V + +V + G + + LA L L R Sbjct: 134 ARMAARAELGGDPGPESATRAGP-----VRRLARSWAVSLEYGLPVGDVLAALREDLVSR 188 Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 ++ A+ +A +A+A ++ LP L VL+ G +LL V A Sbjct: 189 QDFAARTRAGLAGPRATAVVLAGLPVVGLVLGQAMGAHPARVLLESRIGGVLLVVGTALS 248 Query: 173 LIGIMVMRLMIN 184 + G++ + + Sbjct: 249 VAGVVWADRIAD 260 >gi|148556412|ref|YP_001263994.1| type II secretion system protein [Sphingomonas wittichii RW1] gi|148501602|gb|ABQ69856.1| type II secretion system protein [Sphingomonas wittichii RW1] Length = 297 Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 54/147 (36%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 + L R +FP LD++ + +GL + I +++ + + RR++ Sbjct: 134 LHFLKGVRQRAITAEFPFLLDLLQMMLESGLSLDQCFRSIATEENEATPRLAATVRRLVF 193 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+S ++ R + +++ G L+ AL +R +R+ A Sbjct: 194 DLDRGMSYDAALGRWAERTAVGGAKELASLFQQALLQGTELAPALRTFTREFTERRIAHA 253 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + + + +I + +V Sbjct: 254 RESIGRISVQMVLVLIACFLPAIFIVV 280 >gi|260550555|ref|ZP_05824765.1| type II secretory pathway [Acinetobacter sp. RUH2624] gi|260406470|gb|EEW99952.1| type II secretory pathway [Acinetobacter sp. RUH2624] Length = 401 Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 54/163 (33%), Gaps = 11/163 (6%) Query: 9 TAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66 KF D + V A +P+ +A+ + QS V++ V G SL+ Sbjct: 58 QKKFSAYDLALMTRQLSVLVAAAIPLEEALRAVSRQSEKAHVQNLLLSVRSRVLEGHSLA 117 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + + + R+ + G+L L LS +R M+ KVQ + Sbjct: 118 QGMQQSGRFPD------LYIATVAAGERSGHLDLILDQLSDYTENRFAMQKKVQGAMIYP 171 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 + + V L+ + P + + VA Sbjct: 172 IILMLMSFGI---VMGLMTYVVPEIVKTFDQSKDALPWITVAL 211 >gi|282863647|ref|ZP_06272705.1| type II secretion system protein [Streptomyces sp. ACTE] gi|282561348|gb|EFB66892.1| type II secretion system protein [Streptomyces sp. ACTE] Length = 272 Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 40/133 (30%), Gaps = 3/133 (2%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 P D++ + AG DA + PV R LG SE+ Sbjct: 126 AVTAQLPLVADLLAACLSAGAGPRDAAEAVGESLGGPVGDRLVRTAAEIRLGGEPSEAWG 185 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 R + + + + G ++ ++ ++ +R + A +A +A Sbjct: 186 RFGE---IPGAARLARCLERAGATGAPAADPVSRVADEMRAERASAAVARAQRAGVLITA 242 Query: 131 WIIGSLPFCVSTL 143 + + Sbjct: 243 PVGLCFLPAFLAV 255 >gi|220932705|ref|YP_002509613.1| type II secretion system protein [Halothermothrix orenii H 168] gi|219994015|gb|ACL70618.1| type II secretion system protein [Halothermothrix orenii H 168] Length = 410 Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 50/174 (28%), Gaps = 8/174 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISR 71 D+ + + AG+ +S+AV VI + + + G S + R Sbjct: 70 QDNLILFTRQLGNMLGAGIQLSEAVRVIGSLLNPGEFKDIVLIIYDLLKEGQEFSHILER 129 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 R S + + G++ ++ L + + +K V + + Sbjct: 130 FPRI-----FSSAYINMIRAGEESGSIGVVCRRIAGHLEESRKLKRFVISSLIYPVVLFC 184 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA--AFMLIGIMVMRLMI 183 + + V + L + G+ ++ +I Sbjct: 185 VSVIAIIVMFVFVLPRFLDIYRYYGHSLPWTTELLLNINRFLSDYGLYLIFFII 238 Score = 38.2 bits (87), Expect = 0.61, Method: Composition-based stats. Identities = 15/128 (11%), Positives = 42/128 (32%), Gaps = 7/128 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + +G+P+ A+ + ++ + + G LS ++ R Sbjct: 281 RNMGIMLESGVPLLKAIDIASSVTGNEIFHQALQEARQAVKKGGHLSGALDRSGM----- 335 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + G L+E L +++R + + E ++ + F Sbjct: 336 -FPELFVYMVGVGEETGKLTEMLLDVARNFEEEYRELLQRFMKLFEPLLILFMGLVIGFI 394 Query: 140 VSTLVYFT 147 V +++ Sbjct: 395 VISMLLPI 402 >gi|330972856|gb|EGH72922.1| type II secretion system protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 400 Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + AG P+ ++ +++ Q ++ R+ E G LS ++ Sbjct: 62 AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEE 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 S + + GG L L LS L + ++ +V + ++ Sbjct: 122 GSQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + ++ L+ + P ++ + + G + + + +G + Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGEFL 217 >gi|237733161|ref|ZP_04563642.1| predicted protein [Mollicutes bacterium D7] gi|229383705|gb|EEO33796.1| predicted protein [Coprobacillus sp. D7] Length = 283 Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 60/147 (40%), Gaps = 1/147 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ- 59 +K + + F + P+ + + ++ AG+ +S A+ + ++ EF R + Sbjct: 130 LKQDLSMKYQIFDNTLPDYISRVSLAMNAGMNLSQAMIIATRALDGDIKKEFVRFLADTE 189 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 +++ + + P + F +V+ + G +SE L + + D +K + Sbjct: 190 RNQDDIAKPYINLRQRFPTKSCERFCSVVITGIKNGNKMSEILEKETNYINDETLIKMEE 249 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146 Q E ++A G + ++ L+ Sbjct: 250 QGKKNEIVSTAISTGFIFIPITALLIA 276 >gi|169831154|ref|YP_001717136.1| type II secretion system protein [Candidatus Desulforudis audaxviator MP104C] gi|169637998|gb|ACA59504.1| type II secretion system protein [Candidatus Desulforudis audaxviator MP104C] Length = 433 Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 51/164 (31%), Gaps = 9/164 (5%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLS 66 R + + AG+PV A+ ++ Q+ + +R V G SL+ Sbjct: 88 REKVSARELALFSRQSAALIDAGVPVLRALRILTAQAPNRRLRDTLDEVAAAVERGSSLA 147 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + R P T + +LGG L+ L LS + K++++ Sbjct: 148 GAFRRHPDVFP-----SVFTSLVEAGELGGQLNLVLERLSVHYEKEHLFREKMRSVLTYP 202 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + ++ F P VL LL Sbjct: 203 LIVLAVAVLAVAVLT---TFVLPTLAGVLTETGVPLPLLTEIVI 243 Score = 42.4 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 45/129 (34%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 +++G+P+ A+ V+ + R IE + ESI+ ++ L Sbjct: 302 FCRTFASLIKSGVPILQALDVLAKTVGNAGM---ARAIEEISANVGQGESIAVLLERSRL 358 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 T + V + G L + L ++ + A ++E + G + Sbjct: 359 --FPRMVTQMIVVGEETGALDKLLEKVAVYYEQDVDQTVSRLASALEPVLILAVGGVVGL 416 Query: 139 CVSTLVYFT 147 + +++ Sbjct: 417 IIISVLLPL 425 >gi|307545811|ref|YP_003898290.1| general secretion pathway protein F [Halomonas elongata DSM 2581] gi|307217835|emb|CBV43105.1| general secretion pathway protein F [Halomonas elongata DSM 2581] Length = 400 Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 18/160 (11%), Positives = 41/160 (25%), Gaps = 7/160 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + + AG+P+ A+ + Q+ E R + + Sbjct: 60 ERLTLLTRQLATLIDAGIPIGQALEALASQAD----REAARALLLSLVNRVREGYSLADS 115 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G L + L L+ L + + K + + + Sbjct: 116 LKAHPASFDRLYVALVAAGERAGQLPQVLERLADHLERSQRQRQKAKGALVYPLVLVLVS 175 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + VS L+ + P L + Sbjct: 176 VGV---VSGLMTYVVPRLAAQFERSDMTLPWLTRGLIALA 212 >gi|311743760|ref|ZP_07717566.1| type II secretion system protein [Aeromicrobium marinum DSM 15272] gi|311312890|gb|EFQ82801.1| type II secretion system protein [Aeromicrobium marinum DSM 15272] Length = 303 Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 63/157 (40%), Gaps = 6/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +++R ++FP D++ +V AG + A+ +V ++ + E RV+ Sbjct: 146 LSAEVRRREQAMTEEFPAVADLLALAVAAGESPTAALQRVVARAHGELADELGRVLAEVR 205 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++ ++ R+ + ++ F+ ++V G + + L + +R+ + Sbjct: 206 TGSTIVQAFDRLAARTGVTSIARFAEGLAVAVDRGTPVVDVLHAQTADVREAA------R 259 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 ME ++ +P + L + L+ Sbjct: 260 RHLMETGGRREVLMMVPVVFAILPVTVVFAFYPGLVG 296 >gi|158522859|ref|YP_001530729.1| type II secretion system protein [Desulfococcus oleovorans Hxd3] gi|158511685|gb|ABW68652.1| type II secretion system protein [Desulfococcus oleovorans Hxd3] Length = 403 Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 18/159 (11%), Positives = 48/159 (30%), Gaps = 6/159 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ++ + AGLP+ + ++ + + R + + ++ G +L++++ Sbjct: 62 EENVIIFARQFSTMIDAGLPIVQCLDILFSQEDNPTFRKILKSIKDSVEGGQTLADAMKP 121 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + GG L L LS + +K +V+ M + Sbjct: 122 FPDQ-----FDNLFVNMIAAGEAGGILDVILKRLSAYMEKAAKLKRQVKGAMMYPLITLS 176 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 I + + V + + + Sbjct: 177 IAVLVVIVILVFVIPVFQEMFADFGKELPAPTQFVIFLS 215 Score = 44.3 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 10/130 (7%), Positives = 37/130 (28%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+ + DA+ ++ + E + + + + Sbjct: 271 FTRTMGTMLASGVSILDALDIVARTA-GNKVVENAVFKVRSGISEGRTMADPLL----ES 325 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L L ++ + + + ++E ++ G + Sbjct: 326 GVFPSMVCQMISVGESTGALDAMLEKIADFYEEEVDAAVESLTSAIEPLMMVFMGGLIGG 385 Query: 139 CVSTLVYFTS 148 V ++ Sbjct: 386 LVVSMYLPVF 395 >gi|172059566|ref|YP_001807218.1| type II secretion system protein [Burkholderia ambifaria MC40-6] gi|171992083|gb|ACB63002.1| type II secretion system protein [Burkholderia ambifaria MC40-6] Length = 401 Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 17/164 (10%), Positives = 45/164 (27%), Gaps = 6/164 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + ++AGLP++ ++ ++ ++ D V + G + +++R Sbjct: 62 REVTRFTRQLASLLQAGLPLAPSLEMLARTRTRDGVPRIAAGLAREIVGGQRFAAALARY 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L ++ K+ A A Sbjct: 122 PSQFG-----TLYRQLIEVGEASGALGTVLTRVAEHRERADAQWRKLCAALAYPVAVIVF 176 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 ++ + V T + +A + Sbjct: 177 ALAISAALMVWVVPTFRQIFDGFGAALPAPTRALLALSSATSAW 220 Score = 38.6 bits (88), Expect = 0.43, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 41/130 (31%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P++DA A + + ++ G L++++ + Sbjct: 271 WCRSLATLLSAGVPLADAFATLERTAGHPVFEQATAQIAARVLRGARLADAMHAAGCFPD 330 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ G L LA+++ + + + + A E + + Sbjct: 331 DVVQP------IAVAEETGALDTMLADIAALCERQLDARLDALAALGEPLIVIVLGALVG 384 Query: 138 FCVSTLVYFT 147 V + Sbjct: 385 GLVIAMYLPI 394 >gi|325678930|ref|ZP_08158528.1| type II secretion system protein F domain protein [Ruminococcus albus 8] gi|324109434|gb|EGC03652.1| type II secretion system protein F domain protein [Ruminococcus albus 8] Length = 398 Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 19/141 (13%), Positives = 45/141 (31%), Gaps = 6/141 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISR 71 + + + +GL + A+ ++ + + +R V E G S S ++ Sbjct: 58 TAELAYCCRQLSAMMSSGLTIVKALDILYKEEENKGAKAVWRDVYEDVQKGESFSGALEA 117 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P F + ++ G+L + L + + KV+ + Sbjct: 118 KRGCFP-----DFFISMVDAGEISGSLDVTMKRLQEYYANSNKLNNKVKGAMIYPCVLLV 172 Query: 132 IIGSLPFCVSTLVYFTSPGYM 152 ++ L +S + M Sbjct: 173 LVIVLVLAMSVFILPIFRSMM 193 >gi|169797376|ref|YP_001715169.1| general secretion pathway protein F [Acinetobacter baumannii AYE] gi|213155809|ref|YP_002317854.1| general secretion pathway protein F [Acinetobacter baumannii AB0057] gi|215484816|ref|YP_002327051.1| general secretion pathway protein F [Acinetobacter baumannii AB307-0294] gi|301347515|ref|ZP_07228256.1| general secretion pathway protein F [Acinetobacter baumannii AB056] gi|301511742|ref|ZP_07236979.1| general secretion pathway protein F [Acinetobacter baumannii AB058] gi|301596762|ref|ZP_07241770.1| general secretion pathway protein F [Acinetobacter baumannii AB059] gi|332851866|ref|ZP_08433769.1| general secretion pathway protein F [Acinetobacter baumannii 6013150] gi|332867435|ref|ZP_08437595.1| general secretion pathway protein F [Acinetobacter baumannii 6013113] gi|169150303|emb|CAM88200.1| general secretion pathway protein F [Acinetobacter baumannii AYE] gi|213054969|gb|ACJ39871.1| general secretion pathway protein F [Acinetobacter baumannii AB0057] gi|213986479|gb|ACJ56778.1| general secretion pathway protein F [Acinetobacter baumannii AB307-0294] gi|332729651|gb|EGJ60987.1| general secretion pathway protein F [Acinetobacter baumannii 6013150] gi|332733975|gb|EGJ65119.1| general secretion pathway protein F [Acinetobacter baumannii 6013113] Length = 401 Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 54/163 (33%), Gaps = 11/163 (6%) Query: 9 TAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66 KF D + V A +P+ +A+ + QS V++ V G SL+ Sbjct: 58 QKKFSAYDLALMTRQLSVLVAAAIPLEEALRAVSRQSEKAHVQNLLLSVRSKVLEGHSLA 117 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + + + R+ + G+L L LS +R M+ KVQ + Sbjct: 118 QGMQQSGRFPD------LYIATVAAGERSGHLDLILDQLSDYTENRFAMQKKVQGAMIYP 171 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 + + V L+ + P + + VA Sbjct: 172 IILMLMSFGI---VMGLMTYVVPEIVKTFDQSKDALPWITVAL 211 >gi|324989515|gb|EGC21461.1| type IV pilus assembly protein PilC [Streptococcus sanguinis SK353] Length = 408 Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 51/174 (29%), Gaps = 10/174 (5%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 L D + + +G+P+++AV ++ Q+ +VI + Sbjct: 57 KKIKLKDISLFCKQMSVMLNSGIPLNNAVDILEQQTDAKNLKASLKVISKGLKEGN---- 112 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + G L E L +S +++ + Sbjct: 113 QLSKSLIEQNGLFPDLLIRMVQAGEKTGKLDEVLERMSEHYNKELKTSRQIRGAMIYPAV 172 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGIMVM 179 A++ + L+Y P + + L + +AA+ + + Sbjct: 173 LAFLAVAATLV---LLYVVIPNFSGIFEQSGVALPLPTRIVLAASNFVQSYWYI 223 Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ +A+ +++ V + R+ L + Sbjct: 270 FASTLATLTSAGIPLVEAIDSAAATTNNAVVIDKLRIANE-----GLQKGERLTGMLTST 324 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G+L L S + K +E + + Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLNKTSDFYEEELEAAIKQLLSLLEPAMIIVMGVIIGG 384 Query: 139 CVSTLVYFTS 148 V++++ Sbjct: 385 IVASVMLPMF 394 >gi|227876610|ref|ZP_03994720.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243] gi|269976144|ref|ZP_06183140.1| putative type II secretion system protein [Mobiluncus mulieris 28-1] gi|306817559|ref|ZP_07451302.1| type II secretion system protein [Mobiluncus mulieris ATCC 35239] gi|307699933|ref|ZP_07636984.1| type II secretion system F domain protein [Mobiluncus mulieris FB024-16] gi|227842811|gb|EEJ53010.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243] gi|269935473|gb|EEZ92011.1| putative type II secretion system protein [Mobiluncus mulieris 28-1] gi|304649601|gb|EFM46883.1| type II secretion system protein [Mobiluncus mulieris ATCC 35239] gi|307614971|gb|EFN94189.1| type II secretion system F domain protein [Mobiluncus mulieris FB024-16] Length = 386 Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 64/192 (33%), Gaps = 11/192 (5%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 L+K + + + + AG ++ A V + + + + Sbjct: 50 SRLMKPKLKELDAGM--LCAEVATRLIAGADIASAWEVTLRRLHPDLDFAAAKAFAENPH 107 Query: 62 GLSLSESISRMVRYM---------PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112 ++ R + +V +++G L+E L ++ + + Sbjct: 108 ENWRHRFRGQVARNPLATLHHKEATAAALRAMFIATAVSTEVGAPLAEILTRVADGIAAQ 167 Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 AK A + +A+A ++G LP + F + + ++ + V A M Sbjct: 168 LEAGAKRHAAQVGPRATARLLGVLPLAALVMASFIGVDVLGMALSGGLNTGIFVVGAVLM 227 Query: 173 LIGIMVMRLMIN 184 ++G + MI Sbjct: 228 VVGNLWSHAMIR 239 >gi|114798264|ref|YP_760568.1| general secretion pathway protein F [Hyphomonas neptunium ATCC 15444] gi|114738438|gb|ABI76563.1| general secretion pathway protein F [Hyphomonas neptunium ATCC 15444] Length = 403 Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 24/165 (14%), Positives = 52/165 (31%), Gaps = 9/165 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + V +G+ + A+ G S + V G +L+E++ R P Sbjct: 67 LTRQLAVLVSSGMTIEQALTAAAGDSDASPQRGLLLGVRSQVMEGSTLAEAMRAAPRAFP 126 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G L L L+ L ++ V++ + + + Sbjct: 127 P-----LFRAVVSSGESSGRLGLVLDQLAHHLERSYRLRTLVRSALIYPAILGIMATLMV 181 Query: 138 FCVSTLVYFTSPGYMNVLIND---PRGHMLLGVAAAFMLIGIMVM 179 + V +L D P ++G++ G+ V+ Sbjct: 182 TALMVWVVPKLVEQFAMLGADELPPLTRFVIGLSGFVRDWGLFVL 226 >gi|302879518|ref|YP_003848082.1| Type II secretion system F domain [Gallionella capsiferriformans ES-2] gi|302582307|gb|ADL56318.1| Type II secretion system F domain [Gallionella capsiferriformans ES-2] Length = 400 Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 22/168 (13%), Positives = 59/168 (35%), Gaps = 6/168 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 D L + +RAG+P+ ++ + S +++ + E G ++SE+ + Sbjct: 57 RRDLIQFLFQLEMLLRAGVPIQAILSDLRETSETPHIKALCANLYEKIDSGSTISEAFAA 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P + + G L L + L+ + + +K + L Sbjct: 117 NPGIFP-----ELVVNLIRAGEGTGQLPYVLQEIVASLKWQDELVSKTRQLLTYPAFVTL 171 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++GS+ + T + G++ + ++ + + + + Sbjct: 172 VVGSVVVFLMTYLVPQILGFVANMGGTIPLQTVVLLWVSDKFVRYWWI 219 >gi|296109005|ref|YP_003615954.1| Type II secretion system F domain protein [Methanocaldococcus infernus ME] gi|295433819|gb|ADG12990.1| Type II secretion system F domain protein [Methanocaldococcus infernus ME] Length = 299 Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 72/159 (45%), Gaps = 4/159 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L + + K ++ P AL IIV ++ +G +++A+ +V + V F RV+ Sbjct: 74 LYESKMEKLEENLPKALYIIVLALDSGRSINEALHEVVRANIKEVSPVFARVLYLIEKQK 133 Query: 64 -SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S ++++ + + + + ++ + GGNLSE L L++ L D + K ++ ++ Sbjct: 134 LSFEDAMTIVSTFYDSKILRMLGKIMIENRKFGGNLSETLKTLAKTLEDFRLYKRQLMSV 193 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + + A +I+ L + Y+ VL G Sbjct: 194 TANSLAMGFIMICLVVPGVAALL---ASYLMVLGKTLPG 229 >gi|49084732|gb|AAT51226.1| PA4300 [synthetic construct] Length = 304 Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 59/147 (40%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 +KH K R A D+ + +I AGL V + V+ + + E + Sbjct: 141 LKHFAKARRALIADEMILFVQLIRILFDAGLTVEQTLRVVCLEGRGITPQLARELDLALT 200 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ L+E + + R + + ++ V+ + GG+ L L ++ DR+ Sbjct: 201 RADNGIDLAEELEALARRLQVDPLNDCCGVLRQMLRQGGSARSTLLTLKQLFEDRRLTTL 260 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + + + AK S ++ L + ++ Sbjct: 261 QERIGKLSAKMSLVMMVLLFPALLIVL 287 >gi|89892803|ref|YP_516290.1| hypothetical protein DSY0057 [Desulfitobacterium hafniense Y51] gi|89332251|dbj|BAE81846.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 309 Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 64/176 (36%), Gaps = 2/176 (1%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS-LSE 67 + AL II + + AV + + PV S F+ + L ++ Sbjct: 128 KKDIAAELETALSIITTAYLRNEDILTAVEENLPYLNPPVLSVFKGFVSRVRLVDPNVTA 187 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + + + + +L L + L D + + +++ + E + Sbjct: 188 ALHDVKMRIDNAVFHEWCDALISCQH-DRSLKTTLTPIVSKLSDMRVVNGELENMVFEPR 246 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 I+ L L+YF + + + L++ P G ++L + AA + + + Sbjct: 247 KEFIIMVVLVVGNIPLMYFLNQDWYHTLMHTPLGQIVLTICAAVIFVSTAFVIKFT 302 >gi|33596973|ref|NP_884616.1| hypothetical protein BPP2380 [Bordetella parapertussis 12822] gi|33566424|emb|CAE37677.1| putative membrane protein [Bordetella parapertussis] Length = 328 Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 62/146 (42%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + I +R + P +D++ GL V ++ V++ + E + E Sbjct: 163 LLRRIARRRECAEAELPLFIDLLRLLQGVGLSVDQSMHVLIQDFRSVMPVLGGELKIAAE 222 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+SR+ + ++S +I + GG + + LA + +R+R+ ++ Sbjct: 223 QYARGRTREQSLSRLAQGFDNDDLSAICRLIVQVDRHGGAVQDPLARFAERVRERRRLEL 282 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 K + + K + ++ +L + + Sbjct: 283 KARVARLTVKMTGVMVVTLLPALLII 308 >gi|152985681|ref|YP_001350164.1| putative type II secretion system protein [Pseudomonas aeruginosa PA7] gi|150960839|gb|ABR82864.1| general secretion pathway protein F [Pseudomonas aeruginosa PA7] Length = 404 Score = 54.4 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 19/166 (11%), Positives = 56/166 (33%), Gaps = 6/166 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D A + + A LP+ A++ + Q+ + V G+ L+++++ Sbjct: 66 DLAWATRQLASLLAASLPLEAALSATLDQAERKHIAQTLGAVRSDVRGGMRLADALAARP 125 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + + G+L++ + L+ + +R ++ K+ + + Sbjct: 126 R-----DFPEIYRALVAAGEESGDLAQVMERLADYIEERNALRGKILTAFIYPAVVGVVS 180 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + V + D + + A+ + + Sbjct: 181 IGIVIFLLGYVVPQVVSAFSQARQDLPALTRVMLQASDFVRAWGWL 226 Score = 37.4 bits (85), Expect = 0.95, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 38/130 (29%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ ++ + G+SL+ ++ Sbjct: 273 FASTLAILGSAGVPLLRALDAARQTLANDCLAWAVEEATAQVREGVSLASALRA------ 326 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 Q T + + G L L ++ L +A +E + G + Sbjct: 327 RQVFPPILTHLIASGEKTGALPPMLDRAAQTLSRDIERRAMGMTALLEPLMIVVMGGVVL 386 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 387 MIVMAVLMPI 396 >gi|257069182|ref|YP_003155437.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810] gi|256560000|gb|ACU85847.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810] Length = 314 Score = 54.4 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 61/146 (41%), Gaps = 2/146 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 IK+R + +FP D++ +V AG A+ + S + EF + G S Sbjct: 163 IKRRATRMAREFPTVADLLALAVAAGESPIAAMERVARTSHGALPDEFAATVADIRAGTS 222 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +S++++ + PL + F +S+ + G L+E L ++ R+ K ++ + Sbjct: 223 VSQALASLGTRTPLDSLGRFGEGVSIAIERGTPLAEVLRAQAQDAREES--KRELMETAG 280 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPG 150 + + + +V+ PG Sbjct: 281 QREILMLVPVVFFVLPLVIVFAIFPG 306 >gi|256810975|ref|YP_003128344.1| Type II secretion system F domain protein [Methanocaldococcus fervens AG86] gi|256794175|gb|ACV24844.1| Type II secretion system F domain protein [Methanocaldococcus fervens AG86] Length = 299 Score = 54.4 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 69/145 (47%), Gaps = 1/145 (0%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + +++ ++ P AL I++ S+ +G +++A+ +V + V FR+VI Sbjct: 73 SMMYEQKIETLENNIPQALYIMILSLESGRSLNEALEEVVKSNIKEVSDIFRKVIYLIEH 132 Query: 62 G-LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +S E+I+ + + + + ++ + GG+LS++L L++ L D K+ K ++ Sbjct: 133 QKISFEEAITVVSTLYGSRVLMMLARIMIENRKYGGDLSDSLRILAKTLEDFKSYKRQLL 192 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145 +++ A +II + Sbjct: 193 SVTASGLAVGFIILCGVIPAVAGLL 217 >gi|150021619|ref|YP_001306973.1| type II secretion system protein [Thermosipho melanesiensis BI429] gi|149794140|gb|ABR31588.1| type II secretion system protein [Thermosipho melanesiensis BI429] Length = 397 Score = 54.4 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 11/157 (7%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQHLGLSLSESISR 71 D + ++AGL + +A+ ++ Q S R V+ +G SL+++ + Sbjct: 59 KDIVFFTRQLETMIKAGLRLREAIHILSNQEIFSKRFRKVLLNVVNELDVGTSLTDAFKK 118 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + GG L E L LS + + +V++ + + Sbjct: 119 QG------VFDNVFINMLKAGEEGGVLEETLEKLSNYYENLNRTQQQVKSAMVYPI---F 169 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168 I+ V + F P V N P ++ + Sbjct: 170 ILSFAVIVVLVISLFILPKLFMVFGNIPTSGLISTLV 206 >gi|313126822|ref|YP_004037092.1| archaeal flagella assembly protein j [Halogeometricum borinquense DSM 11551] gi|312293187|gb|ADQ67647.1| archaeal flagella assembly protein J [Halogeometricum borinquense DSM 11551] Length = 682 Score = 54.4 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 24/178 (13%), Positives = 57/178 (32%), Gaps = 7/178 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQHL 61 R + P+A+ + GL + + + + V EF+ +++ Sbjct: 143 KASSRKREINMLLPDAISFMYALSVGGLNQLEILEAMGRAEDTYGEVAREFQSIVQETEY 202 Query: 62 GL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +I P E+S F T + GGN+ + L + + ++ Sbjct: 203 FGTDYRNAIRDQAMVTPSDELSQFLTDMLSIVNSGGNMEQFLDDKKEKHLRTAKQEQEMT 262 Query: 121 ALSMEAKASAWII----GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 ++E ++ L + ++ ++L G + L +L+ Sbjct: 263 LETLELFGEMYMTLSLFPLLLIIILVIMSMLGQAQQSLLYATVYGLIPLTGVGFLVLV 320 >gi|149193938|ref|ZP_01871036.1| msha biogenesis protein mshg [Caminibacter mediatlanticus TB-2] gi|149135891|gb|EDM24369.1| msha biogenesis protein mshg [Caminibacter mediatlanticus TB-2] Length = 415 Score = 54.4 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 8/164 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMP 77 AL + ++AG+ + DA+ I S+DP+ E E G SLS+ + Y+ Sbjct: 77 ALRQLSVLIKAGISLKDALEDIGENSADPLIKEVFLNAAEAIDSGKSLSDVFAEYEEYLG 136 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G+L+ A+ L++I + + K+ + I Sbjct: 137 GLSL-----AMVRLGEKTGDLAMAIDYLAQIYENMYENRRKMIKALRYPIITLIAIVVAF 191 Query: 138 FCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVM 179 + LV +LLG+ G++V+ Sbjct: 192 VFLILLVVPKFKAIFEQFHAQLPLPTRILLGIEYVLTNYGLLVL 235 >gi|309810893|ref|ZP_07704694.1| conserved hypothetical protein [Dermacoccus sp. Ellin185] gi|308435199|gb|EFP59030.1| conserved hypothetical protein [Dermacoccus sp. Ellin185] Length = 232 Score = 54.4 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 64/172 (37%), Gaps = 7/172 (4%) Query: 18 NALDIIVRSVRAGLPVSDAVAVI-----VGQSSDPVRSE-FRRVIETQHLGLSLSESISR 71 +D +V +RAG V+ A+ + + S ++R+ + + Sbjct: 49 QLVDALVTVLRAGSAVTPALIMALDGVGATSAGGSATSAGWQRLRLEAVRDGDVVQVWRD 108 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + R + + ++ G L++A+ +R +R R++ +A V + AKAS Sbjct: 109 LGRLWRSAAFEEVAAAWQLSARHGCPLADAMEGAARSVRARRSHRACVDGATAGAKASTS 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 ++ LP L + + G + L A M +G R M Sbjct: 169 VLLGLPVLGVGLGMLLGVDMLG-CYSGFSGLVTLWPGIALMFVGARWSRRMT 219 >gi|269101773|ref|ZP_06154470.1| type 4 fimbrial assembly protein PilC [Photobacterium damselae subsp. damselae CIP 102761] gi|268161671|gb|EEZ40167.1| type 4 fimbrial assembly protein PilC [Photobacterium damselae subsp. damselae CIP 102761] Length = 408 Score = 54.4 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 20/169 (11%), Positives = 43/169 (25%), Gaps = 4/169 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R D + + +G+P+ A+ ++ R + TQ + Sbjct: 62 RNQMKSSDVTAITRQLATMIESGVPIVQALKLMASS----HHKAEVRAVLTQVNTQVEAG 117 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + F + + G L + L+ + M+ KV + Sbjct: 118 ASLSKALKSSSPLFDNFYCDLVATGEETGYLGQVFVRLATYREKSEAMRKKVIKAMIYPS 177 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 S+ + V + + A+ LI Sbjct: 178 MVMLTAISVTILMLVFVIPQFAAIFGSFGAELPWFTRQVLKASDFLINY 226 >gi|269796609|ref|YP_003316064.1| hypothetical protein Sked_33350 [Sanguibacter keddieii DSM 10542] gi|269098794|gb|ACZ23230.1| hypothetical protein Sked_33350 [Sanguibacter keddieii DSM 10542] Length = 239 Score = 54.4 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 19/165 (11%), Positives = 49/165 (29%), Gaps = 16/165 (9%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + VR+G+P A A + ++ Sbjct: 81 VITQVAGLVRSGMPPDRAWAGVGVTVRPDGIPTPADLLH----------------LTSDA 124 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + Q+G ++ L ++ L A+ +++A ++ LP Sbjct: 125 SQARAVVAACRLAQQVGAPIAPVLDSIVATLVAAAESAAERDTALASPRSTARLLLWLPA 184 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + G + +L+ + A + +G R ++ Sbjct: 185 AGAVVATVLGAGPVQLLLGGGPAVLAPVTGALLLAVGRWWTRRLV 229 >gi|222055731|ref|YP_002538093.1| type II secretion system protein [Geobacter sp. FRC-32] gi|221565020|gb|ACM20992.1| type II secretion system protein [Geobacter sp. FRC-32] Length = 402 Score = 54.4 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 61/190 (32%), Gaps = 24/190 (12%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66 R ++ ++AGLP+ A+ I+ + + V E G +LS Sbjct: 57 RRKVDNKALLTFNQELLVLIKAGLPIIQALDTILERVEKGRLPEILNDVREDVKGGAALS 116 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + + + P + G+L + ++ L+ + K KV + + Sbjct: 117 TAFQKHPKVFPH-----LYIASVQAGERTGDLPQTISRYIAFLKKSEGFKKKVISALIYP 171 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---------------LGVAAAF 171 I+ V+ L+ + P + V + L VA Sbjct: 172 G---IILTVAFLAVTMLLVYVVPTFSQVYADSKSSLPLPTQMLIGFTSVLKRYFLVAVGL 228 Query: 172 MLIGIMVMRL 181 ++I ++R Sbjct: 229 IIISAFLLRK 238 >gi|291286276|ref|YP_003503092.1| Type II secretion system F domain protein [Denitrovibrio acetiphilus DSM 12809] gi|290883436|gb|ADD67136.1| Type II secretion system F domain protein [Denitrovibrio acetiphilus DSM 12809] Length = 402 Score = 54.4 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 64/179 (35%), Gaps = 6/179 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66 R D ++ + +VR+GLP+S A++ + + + ++S + H G++LS Sbjct: 55 RQKINPQDIVELIENLHLTVRSGLPISSALSDLAKDADNNHLQSVLENISNRVHAGMTLS 114 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++SR S + + + G L L + + ++ ++ K ++ + Sbjct: 115 KALSR-----HSGIFSDITVNLVRIGEETGKLDNTLKDAAEHMKKMNDLTTKTKSALIYP 169 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + V D L + + + +I+F Sbjct: 170 SFALVGMILTMVFWLVAVMPKMISAFKSFQIDLPPATKLIMGMSGFFQSYFIETAIISF 228 >gi|256827715|ref|YP_003151674.1| Flp pilus assembly protein TadC [Cryptobacterium curtum DSM 15641] gi|256583858|gb|ACU94992.1| Flp pilus assembly protein TadC [Cryptobacterium curtum DSM 15641] Length = 306 Score = 54.4 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 44/139 (31%), Gaps = 1/139 (0%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG-LSLS 66 R + AL I+ +R+GL A+ + SE G + + Sbjct: 157 RKKQMERHLSEALSILCLGLRSGLSFDRALEKYCASFPTMLASELSGAHMAWMTGLTTRT 216 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ + + I + G L++AL L+ R + + + Sbjct: 217 EALHAVASKYDSPLIRRVMDSIVRSMRFGAPLADALDELAAEARLARKALLDEEVMKAPV 276 Query: 127 KASAWIIGSLPFCVSTLVY 145 K + + + +V Sbjct: 277 KMMIPVGTLILPSMLLMVL 295 >gi|184156701|ref|YP_001845040.1| Type II secretory pathway, component PulF [Acinetobacter baumannii ACICU] gi|239500897|ref|ZP_04660207.1| Type II secretory pathway, component PulF [Acinetobacter baumannii AB900] gi|260556268|ref|ZP_05828487.1| general secretion pathway protein F [Acinetobacter baumannii ATCC 19606] gi|332873110|ref|ZP_08441067.1| general secretion pathway protein F [Acinetobacter baumannii 6014059] gi|183208295|gb|ACC55693.1| Type II secretory pathway, component PulF [Acinetobacter baumannii ACICU] gi|193076208|gb|ABO10829.2| general secretion pathway protein F [Acinetobacter baumannii ATCC 17978] gi|260410323|gb|EEX03622.1| general secretion pathway protein F [Acinetobacter baumannii ATCC 19606] gi|322506588|gb|ADX02042.1| PulF [Acinetobacter baumannii 1656-2] gi|323516467|gb|ADX90848.1| Type II secretory pathway, component PulF [Acinetobacter baumannii TCDC-AB0715] gi|332738622|gb|EGJ69492.1| general secretion pathway protein F [Acinetobacter baumannii 6014059] Length = 401 Score = 54.4 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 54/163 (33%), Gaps = 11/163 (6%) Query: 9 TAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66 KF D + V A +P+ +A+ + QS V++ V G SL+ Sbjct: 58 QKKFSAYDLALMTRQLSVLVAAAIPLEEALRAVSRQSEKAHVQNLLLSVRSKVLEGHSLA 117 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + + + R+ + G+L L LS +R M+ KVQ + Sbjct: 118 QGMQQSGRFPD------LYIATVAAGERSGHLDLILDQLSDYTENRFAMQKKVQGAMIYP 171 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 + + V L+ + P + + VA Sbjct: 172 IILMLMSFGI---VMGLMTYVVPEIVKTFDQSKDALPWITVAL 211 >gi|291518345|emb|CBK73566.1| Type II secretory pathway, component PulF [Butyrivibrio fibrisolvens 16/4] Length = 350 Score = 54.4 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 20/184 (10%), Positives = 57/184 (30%), Gaps = 7/184 (3%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K R ++ D + + +G+ +A+++ +S E + + Sbjct: 4 KSRKKLTSEELYAFSDEMGMMISSGVSAIQGLAMMIDESEGGEEKELL-----VEMEKVV 58 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ S + + ++ + G + L NL+ + + +++ Sbjct: 59 GQTGSLSKAIEDAEVFPDYFVEMAKMGEQTGKMDSVLVNLAAHYSREMAISSAIRSAVTY 118 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML--LGVAAAFMLIGIMVMRLMI 183 ++ + + T + L G L + G++ + L+I Sbjct: 119 PLMMVAMMLVIIIVLVTEIMPVFDRVFKQLGGTMDGLSAGFLTIGKFLKSNGVIFLILLI 178 Query: 184 NFDV 187 V Sbjct: 179 AIVV 182 >gi|326424177|ref|NP_762076.2| type II/IV secretion system protein TadC [Vibrio vulnificus CMCP6] gi|319999560|gb|AAO07066.2| Type II/IV secretion system protein TadC, associated with Flp pilus assembly [Vibrio vulnificus CMCP6] Length = 292 Score = 54.4 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 49/137 (35%), Gaps = 2/137 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIET 58 + T P LD++ V G+ + + + + D + V Sbjct: 135 ISSRANSITRHISSRLPFLLDLMNVCVHTGMTIEATLEYLAKELQTVDKYLAFTVNVTVQ 194 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + +++++ +P E F + Q G ++ + L L+ +R M+ + Sbjct: 195 RSKVIGINKALEEFYEMVPSSEAQSFVMTLIQSLQFGSSVGQVLGTLATDIRQINMMELE 254 Query: 119 VQALSMEAKASAWIIGS 135 + + AK S +I Sbjct: 255 EKIGKLGAKMSIPMIVF 271 >gi|254499404|ref|ZP_05112070.1| type IV pilus assembly protein PilC [Legionella drancourtii LLAP12] gi|254351383|gb|EET10252.1| type IV pilus assembly protein PilC [Legionella drancourtii LLAP12] Length = 409 Score = 54.4 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 20/173 (11%), Positives = 52/173 (30%), Gaps = 6/173 (3%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLS 64 KK D + + +G+P+ + ++ QS+ ++ + GL+ Sbjct: 62 KKNKRITSGDITIFSRQLATMIESGIPLVQSFDIVAKGQSNKRIKDLIEDIKHDVETGLT 121 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L+E++ + + + + G+L L ++ + +K K++ Sbjct: 122 LAETLQKRPA-----YFNELFCNLVDAGEKSGSLDIMLNKIATYKEKIETIKKKIKKALT 176 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 A + + + V D + V + Sbjct: 177 YPMAVIIVAFIVTAGLLIFVVPQFEALFKGFGADLPAMTKVVVHMSKFFQSYW 229 Score = 41.3 bits (95), Expect = 0.057, Method: Composition-based stats. Identities = 15/136 (11%), Positives = 44/136 (32%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRM 72 + + AGLP+ +A+ + G + + + R+ E +G +++++ Sbjct: 274 AAIARFARTLSITFAAGLPLVEALKSVAGATGNIIFSKATERIREDVSIGQQMNKAMEN- 332 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 T + + G L + L ++ + + + +E + + Sbjct: 333 -----THLFPNMVTQMVAIGEESGALEKMLGKVADFYEEDVDNSVDSLSSLLEPIIMSIL 387 Query: 133 IGSLPFCVSTLVYFTS 148 + V + Sbjct: 388 GILVGGLVVAMYLPIF 403 >gi|224373171|ref|YP_002607543.1| msha biogenesis protein mshg [Nautilia profundicola AmH] gi|223589457|gb|ACM93193.1| msha biogenesis protein mshg [Nautilia profundicola AmH] Length = 414 Score = 54.4 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 61/163 (37%), Gaps = 8/163 (4%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPL 78 + + ++AG+ + DA+ I + D + E F + E G SLS++ + Y+ Sbjct: 78 IRQLAVLIKAGISLKDALEDIANNTKDALIKEVFLKAAEAIDSGKSLSDTFAEYEEYLGG 137 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G+L AL +L++I + + K+ + I + Sbjct: 138 ISL-----AMVRLGEQTGDLVMALESLAQIYENMYENRRKMVKALRYPVITLIAIAAAFT 192 Query: 139 CVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVM 179 + +V L + +LL + G +V+ Sbjct: 193 FLILVVVPKFKAMFEQLHAELPLPTRILLLIEKILSQYGFLVL 235 Score = 36.3 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 43/129 (33%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L + +++G+P+ DA+ + G + V + + + +++ S Sbjct: 281 FLMTMASLLKSGIPLVDALKISEGIIENEVLK-----NKIKEIIKGINQGRSFAEMVAEQ 335 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 V+F + + + G L L + + DR S+E I G + Sbjct: 336 NLVNFVALRMISAGEDSGELDSMLESAAGYYEDRFQDIIDNMQASIEPIMLTVIGGLVLL 395 Query: 139 CVSTLVYFT 147 + Sbjct: 396 IALGIFLPM 404 >gi|289675688|ref|ZP_06496578.1| type II secretion system protein [Pseudomonas syringae pv. syringae FF5] Length = 252 Score = 54.4 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 68/157 (43%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + + ++R + + + + ++ +G+ V A+ V+ + + E R V+ Sbjct: 92 LATVARRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLM 151 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL L E + + + + E+S +++ GG ++L L +++ DR+ + Sbjct: 152 RVDSGLELGEELRKTAALLDVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 211 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + AK S ++ L + ++ PG+M + Sbjct: 212 QEYISKLSAKMSVVMMVFLFPALLIVL--AGPGFMAI 246 >gi|4680733|gb|AAD27751.1| XcmS [Pseudomonas putida GB-1] Length = 395 Score = 54.4 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 66/179 (36%), Gaps = 13/179 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 ++ + +R A F D + + AGLP+ DA+ + ++ R ++ Sbjct: 47 LRGMAWRREAAF--DLVLFSQELSTLLNAGLPLIDALESLAEKAPSPATRKVLAELVRQL 104 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + G SLS+++ + R P + S+ G L +ALA + ++ K+ Sbjct: 105 YEGRSLSQALGQQPRVFPP-----LYVALVQSSERTGALGDALARYISYRQRLDLVRQKL 159 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 S+ + G + + V + G L ++ M IG+ + Sbjct: 160 VGASVYPLLLLLVGGGVVLFLLGYVVPRFSQVFEGM-----GTELPWLSRVLMQIGLFL 213 >gi|15599496|ref|NP_252990.1| TadC [Pseudomonas aeruginosa PAO1] gi|107100116|ref|ZP_01364034.1| hypothetical protein PaerPA_01001137 [Pseudomonas aeruginosa PACS2] gi|116052334|ref|YP_792645.1| hypothetical protein PA14_55860 [Pseudomonas aeruginosa UCBPP-PA14] gi|218893392|ref|YP_002442261.1| TadC [Pseudomonas aeruginosa LESB58] gi|254239030|ref|ZP_04932353.1| hypothetical protein PACG_05207 [Pseudomonas aeruginosa C3719] gi|254244889|ref|ZP_04938211.1| hypothetical protein PA2G_05762 [Pseudomonas aeruginosa 2192] gi|9950522|gb|AAG07688.1|AE004846_5 TadC [Pseudomonas aeruginosa PAO1] gi|115587555|gb|ABJ13570.1| putative pilus assembly protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126170961|gb|EAZ56472.1| hypothetical protein PACG_05207 [Pseudomonas aeruginosa C3719] gi|126198267|gb|EAZ62330.1| hypothetical protein PA2G_05762 [Pseudomonas aeruginosa 2192] gi|218773620|emb|CAW29434.1| TadC [Pseudomonas aeruginosa LESB58] Length = 303 Score = 54.4 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 59/147 (40%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 +KH K R A D+ + +I AGL V + V+ + + E + Sbjct: 141 LKHFAKARRALIADEMILFVQLIRILFDAGLTVEQTLRVVCLEGRGITPQLARELDLALT 200 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ L+E + + R + + ++ V+ + GG+ L L ++ DR+ Sbjct: 201 RADNGIDLAEELEALARRLQVDPLNDCCGVLRQMLRQGGSARSTLLTLKQLFEDRRLTTL 260 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + + + AK S ++ L + ++ Sbjct: 261 QERIGKLSAKMSLVMMVLLFPALLIVL 287 >gi|295837158|ref|ZP_06824091.1| type II secretion system protein [Streptomyces sp. SPB74] gi|197699510|gb|EDY46443.1| type II secretion system protein [Streptomyces sp. SPB74] Length = 312 Score = 54.4 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 63/156 (40%), Gaps = 4/156 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + + LD++ S+ G + +A+ S R + Sbjct: 158 IRRDAQDKRRDLRRVIGAYLDLVAMSLAGGRGLPEALLAAAEVSDGWASRRIRDALHDAR 217 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + + ++ R+ + ++E+ S+ +++ + G + E+LA+ + +R R+ + + Sbjct: 218 ITGHTQWYALGRLGEELGIEELKELSSSLALVADDGAKVRESLASRAETMRHRELAEIE- 276 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 S K+ + +I L C LV+ P M V Sbjct: 277 --GSAGEKSQSMLIAQLLLCAGFLVFLIFPAAMRVF 310 >gi|296390999|ref|ZP_06880474.1| TadC [Pseudomonas aeruginosa PAb1] gi|313106819|ref|ZP_07793031.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016] gi|310879533|gb|EFQ38127.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016] Length = 303 Score = 54.4 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 59/147 (40%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 +KH K R A D+ + +I AGL V + V+ + + E + Sbjct: 141 LKHFAKARRALIADEMILFVQLIRILFDAGLTVEQTLRVVCLEGRGITPQLARELDLALT 200 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ L+E + + R + + ++ V+ + GG+ L L ++ DR+ Sbjct: 201 RADNGIDLAEELDALARRLQVDPLNDCCGVLRQMLRQGGSARSTLLTLKQLFEDRRLTTL 260 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + + + AK S ++ L + ++ Sbjct: 261 QERIGKLSAKMSLVMMVLLFPALLIVL 287 >gi|302184976|ref|ZP_07261649.1| general secretion pathway protein F [Pseudomonas syringae pv. syringae 642] Length = 400 Score = 54.4 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + AG P+ ++ +++ Q ++ R+ E G LS ++ Sbjct: 62 AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEE 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 S + + GG L L LS L + ++ +V + ++ Sbjct: 122 GSQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + ++ L+ + P ++ + + G + + + +G + Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGEFL 217 >gi|293610167|ref|ZP_06692468.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827399|gb|EFF85763.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325124342|gb|ADY83865.1| general type II secretion pathway protein F [Acinetobacter calcoaceticus PHEA-2] Length = 401 Score = 54.4 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 11/163 (6%) Query: 9 TAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLS 66 KF D + V A +P+ +A+ + QS V++ V G SL+ Sbjct: 58 QKKFSAYDLALMTRQLSVLVAAAIPLEEALRAVSRQSEKTHVQNLLLSVRSRVLEGHSLA 117 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + + + R+ + G+L L LS +R M+ KVQ + Sbjct: 118 QGMQQSGRFPD------LYIATVAAGERSGHLDLILDQLSDYTENRFAMQKKVQGAMIYP 171 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 + + V L+ + P + + + VA Sbjct: 172 IILMLMSFGI---VMGLMTYVVPEIVKTFDQNKDALPWITVAL 211 >gi|255319682|ref|ZP_05360890.1| general secretion pathway protein F [Acinetobacter radioresistens SK82] gi|262380035|ref|ZP_06073190.1| general secretion pathway protein F [Acinetobacter radioresistens SH164] gi|255303211|gb|EET82420.1| general secretion pathway protein F [Acinetobacter radioresistens SK82] gi|262298229|gb|EEY86143.1| general secretion pathway protein F [Acinetobacter radioresistens SH164] Length = 401 Score = 54.4 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 65/192 (33%), Gaps = 23/192 (11%) Query: 8 RTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSL 65 R D + V A +P+ +A+ + QS V++ V G SL Sbjct: 57 RKKGLNAYDLALMTRQLSVLVAAAIPLEEAIRAVGKQSEKVHVQNLLMSVRSKVLEGHSL 116 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++I + R+ + G+L L L+ +R M+ K+Q + Sbjct: 117 AQAIQQSGRFPD------LYIATIAAGERSGHLDLILDQLADYTENRFAMQKKIQGAMVY 170 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA------------AFML 173 + ++ V L+ + P + + + V ++ Sbjct: 171 PIILMLMSFAI---VMGLMTYVVPDIVKTFDQSKQALPAITVILMKTSDFIRQAWPFLLV 227 Query: 174 IGIMVMRLMINF 185 I ++ + L+I F Sbjct: 228 ISVVGIMLLIRF 239 Score = 34.7 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 36/130 (27%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + R+G+P+ DA+ + S++ V + + + + Y P Sbjct: 271 FASTLSILTRSGVPLVDALKIGAAVSNNWVIRDSVNLAAEKVTEGGNLATQLERAGYFPP 330 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L L S + +E + G + Sbjct: 331 -----MMVQMIRSGEASGELDRMLERASTMQDREVATFISTLLALLEPLMLVVMAGIVLV 385 Query: 139 CVSTLVYFTS 148 V ++ Sbjct: 386 IVIAVMLPIV 395 >gi|221197785|ref|ZP_03570831.1| type II secretion system protein [Burkholderia multivorans CGD2M] gi|221204657|ref|ZP_03577674.1| type II secretion system protein [Burkholderia multivorans CGD2] gi|221213135|ref|ZP_03586111.1| type II secretion system protein [Burkholderia multivorans CGD1] gi|221167348|gb|EED99818.1| type II secretion system protein [Burkholderia multivorans CGD1] gi|221175514|gb|EEE07944.1| type II secretion system protein [Burkholderia multivorans CGD2] gi|221181717|gb|EEE14118.1| type II secretion system protein [Burkholderia multivorans CGD2M] Length = 330 Score = 54.4 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 56/145 (38%), Gaps = 5/145 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLSESIS 70 ++ P +D++ GL + ++ V+ + SE G + +S+ Sbjct: 181 NELPLLVDMLRLLQGVGLSLDQSLQVVTNDFRGMLPVLSSEVGIAQRQFAAGRTREQSLQ 240 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 R+ +++ ++ + GG + E L LR+ + + + + K + Sbjct: 241 RLSSGFDNEDLRAVVRLMIQVDKHGGAVQEPLKQFGDRLRETRRALLRERIGRLTVKMTG 300 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ +L + L+ PG + V+ Sbjct: 301 VMVLTLLPAL--LIVTAGPGMLAVM 323 >gi|330875838|gb|EGH09987.1| general secretion pathway protein F [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 400 Score = 54.0 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + AG P+ ++ +++ Q R+ R+ E G LS ++ Sbjct: 62 AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGKPLSVALEEE 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 S + + GG L L LS L + ++ +V + ++ Sbjct: 122 GSQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + ++ L+ + P ++ + + G + + + +G + Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILDLGQFL 217 >gi|325109734|ref|YP_004270802.1| type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] gi|324970002|gb|ADY60780.1| Type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] Length = 402 Score = 54.0 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 10/174 (5%), Positives = 51/174 (29%), Gaps = 6/174 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + +++G+P+ ++ ++ + +++ + Sbjct: 62 RHLSVFYVQLADLLQSGVPLLRSLELL----EGKTPHQTLKLVLEDVRAQVADGNRLAEA 117 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + + G + + L ++ ++ +K++V + I Sbjct: 118 MKRHERVFGDLAVSMVRAGEEGSFMEDVLKRIASFTEHQEELKSRVIGSMVYPFFLLSIG 177 Query: 134 GSLPFCVSTLVYFTSPGYMNVLI--NDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + T + + ++ + +L + + ++I Sbjct: 178 TVVVAAMMTFFVPKFEPIFEGMAGRGSLPWATVALMSLSDVLQNYLWIVILILI 231 Score = 40.1 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 16/133 (12%), Positives = 42/133 (31%), Gaps = 5/133 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 I+ ++ G+P+ ++ + + + V S SLS + Sbjct: 268 AIARFCRILGTLLKNGVPILQSLRIAKDATGNRVLS-----RAIGQAAESLSAGEALANP 322 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + NL + L N++ + + + ++ +E ++ Sbjct: 323 LGASGQFPDEVVEMIAVGEEANNLEQVLINVADNMERQTERQLELFVRMLEPILLTFMAA 382 Query: 135 SLPFCVSTLVYFT 147 F V L+ Sbjct: 383 ITLFVVVALMLPI 395 >gi|291613153|ref|YP_003523310.1| type II secretion system F domain protein [Sideroxydans lithotrophicus ES-1] gi|291583265|gb|ADE10923.1| Type II secretion system F domain protein [Sideroxydans lithotrophicus ES-1] Length = 400 Score = 54.0 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 22/170 (12%), Positives = 65/170 (38%), Gaps = 6/170 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73 D + + VRAG+P+ + + + + E ++E+ G LS++++ Sbjct: 60 DLITFFFNLEQLVRAGVPLLECLGDLRDTMEEATFREIIASMVESIESGKKLSQAMAEHP 119 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + ++ + G L E A+L+ L+ + M ++ + + + ++ Sbjct: 120 NA-----FDKITVSLTRAGEDSGRLVEVFAHLTESLKWQDEMASQTKTMMIYPAFVGTVV 174 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 ++ F + + ++ + D + +A + + + L+ Sbjct: 175 LAITFFLMIYLVPQLVSFIKGMGQDIPIQTRMLLATSSFFVHYWYVLLLT 224 >gi|160895357|ref|ZP_02076128.1| hypothetical protein CLOL250_02916 [Clostridium sp. L2-50] gi|156863050|gb|EDO56481.1| hypothetical protein CLOL250_02916 [Clostridium sp. L2-50] Length = 402 Score = 54.0 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 60/181 (33%), Gaps = 8/181 (4%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLG 62 LIKK+ D ++AG+ + A+ ++ Q +P ++ G Sbjct: 53 LIKKKVK--SRDLGVFCKQFSAVIKAGVTIISALELMGDQIENPTLKRAVMDAKTYVEKG 110 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +L++++ P + +L GNL L L + +K++ Sbjct: 111 GTLADALRVNSDVFPP-----IMINMVAAGELSGNLEVCLDRLVEHFEKDNALSSKIKGA 165 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + ++ + V V + + VAA+ +I + ++ Sbjct: 166 MVYPIVVFIVMIIVVIVVMIAVIPNFTSMFEDMGTKLPLATRMMVAASNFIIHKWYILII 225 Query: 183 I 183 + Sbjct: 226 V 226 Score = 39.7 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 13/139 (9%), Positives = 48/139 (34%), Gaps = 10/139 (7%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+ + DAV + + + + +++ I + Sbjct: 269 FARTMSTLMASGISMIDAVEQVAKMMDNKIIRDGL-----MDAKTQVAKGIPLSKPLKDM 323 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + ++ + G++ E L+ ++ + + +ME +I + Sbjct: 324 EVLPPMLSAMTKIGEETGDIEEMLSKVADYYDEEVDAATNKLTAAMEP-----LIMVILA 378 Query: 139 CVSTLVYFTSPGYMNVLIN 157 C+ ++ G + + + Sbjct: 379 CIVGMIVAAVYGPIMSMYD 397 >gi|168186720|ref|ZP_02621355.1| bacterial type II secretion system protein F [Clostridium botulinum C str. Eklund] gi|169295347|gb|EDS77480.1| bacterial type II secretion system protein F [Clostridium botulinum C str. Eklund] Length = 402 Score = 54.0 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 20/157 (12%), Positives = 46/157 (29%), Gaps = 6/157 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D AG + ++V ++ Q+ ++ V E G +LS + + Sbjct: 64 DLAVFCRQFATLFDAGADILNSVDLLKKQTENPKLKDSLEVVYEEIQKGYTLSSCMDKFK 123 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 P + + G L + ++ + +K++ M + Sbjct: 124 DVYPK-----LLVNMVRSGEETGQLGSVMEKMAEQYEREHRINSKIKGAFMYPIILVIVC 178 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 S + T V T + G + + + Sbjct: 179 VSAVTFLLTCVMPTFVQMFQDSGVELPGPTKVVMGIS 215 Score = 40.1 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 12/147 (8%), Positives = 43/147 (29%), Gaps = 7/147 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +KK K + + ++ +G+ + +A++++ + + S Sbjct: 259 VKKTMRKIIAM--RFSRGLSTTLYSGVSMINALSIVAKVIDNKLIELKIMKARE-----S 311 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + + ++ + E ++ + G L + L + + + Sbjct: 312 VIKGVTLSESLREITEFPEMLFAMTKIGEESGRLDDILEKTASFYEQEVEESLEKMTTMI 371 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGY 151 E + + V + + Sbjct: 372 EPILIVVMGILIGAIVVAMAMPMFDMF 398 >gi|78065138|ref|YP_367907.1| type II secretion system protein F [Burkholderia sp. 383] gi|77965883|gb|ABB07263.1| type II secretion system protein F [Burkholderia sp. 383] Length = 403 Score = 54.0 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 18/143 (12%), Positives = 43/143 (30%), Gaps = 6/143 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D + ++AGLP++ ++ ++ D + + G +E+++R Sbjct: 64 RDVTRFTRQLASLLQAGLPLAPSLEMLARTRPHDGLPRIAAGLAREIVGGRRFAEALARY 123 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G+L L L+ K++A A Sbjct: 124 PSQFG-----TLYRQLIEVGEASGSLGIVLTRLAEHRERTDAQWRKLRAALAYPAAVILF 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155 ++ + V T + Sbjct: 179 GLAISAALMVWVVPTFRQIFDGF 201 Score = 37.0 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 40/130 (30%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P++DA A + + + G L++++ + Sbjct: 273 WCRSLATLLGAGVPLADAFATLERTAGHPVFEHATAHIAARVLRGARLADAMQSAGCFPD 332 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ G L LA+++ + + + + A E + + Sbjct: 333 DVVQP------IAVAEETGALDMMLADIAALCERQLDARLDALAALGEPLIVIVLGALVG 386 Query: 138 FCVSTLVYFT 147 V + Sbjct: 387 GLVIAMYLPI 396 >gi|302342771|ref|YP_003807300.1| Type II secretion system F domain protein [Desulfarculus baarsii DSM 2075] gi|301639384|gb|ADK84706.1| Type II secretion system F domain protein [Desulfarculus baarsii DSM 2075] Length = 359 Score = 54.0 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 56/169 (33%), Gaps = 7/169 (4%) Query: 7 KRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLS 64 +R ++ N + + V AGLP+ + + S VR+ ++ G S Sbjct: 12 RRAKPLRAEELCNFTEGLAVLVGAGLPLDHVLETVSFMHDSGRVRALTAEMLLAVRGGAS 71 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L+ +++ S + +L G L++ L L++ LR +K + + + Sbjct: 72 LTRAMAE-----QNGVFSPAYLGLVQAGELSGALAKVLDELAKGLRRNLEIKRHLLTVLL 126 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + + V T G N + + + Sbjct: 127 YPAVLLAVSFLAILFIMIYVLPTFVGVFNDMSTPLPPTAAFLLGLGSFM 175 >gi|167740289|ref|ZP_02413063.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei 14] Length = 387 Score = 54.0 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 17/153 (11%), Positives = 42/153 (27%), Gaps = 6/153 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AGL ++ ++ ++ + + + G S ++ R R Sbjct: 53 FARQLAGLLHAGLALAPSLELLAQATQRSEMPRVAAGLAREIVAGRQFSAALRRYPRQFD 112 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 F + + G L+ L L+ A+V+ ++ Sbjct: 113 P-----FFCQLVAVGETAGALAAVLTRLADDRERAAAQYARVKGALAYPATVLLFALAIT 167 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + V T + +A + Sbjct: 168 AALLVWVVPTFEQFFAGFGAPLPAPTRFVLALS 200 >gi|66046379|ref|YP_236220.1| type II secretion system protein [Pseudomonas syringae pv. syringae B728a] gi|289679112|ref|ZP_06500002.1| general secretion pathway protein F [Pseudomonas syringae pv. syringae FF5] gi|63257086|gb|AAY38182.1| type II secretion system protein [Pseudomonas syringae pv. syringae B728a] Length = 400 Score = 54.0 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + AG P+ ++ +++ Q ++ R+ E G LS ++ Sbjct: 62 AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEE 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 S + + GG L L LS L + ++ +V + ++ Sbjct: 122 GSQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + ++ L+ + P ++ + + G + + + +G + Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGEFL 217 >gi|323359116|ref|YP_004225512.1| Flp pilus assembly protein TadB [Microbacterium testaceum StLB037] gi|323275487|dbj|BAJ75632.1| Flp pilus assembly protein TadB [Microbacterium testaceum StLB037] Length = 300 Score = 54.0 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 68/182 (37%), Gaps = 9/182 (4%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L+++R + D + + + + AGL + A + + R + Sbjct: 1 MLVRRRASSTDADPLDTVLRLAVLLSAGLSAAAAWQHLAEDAEPIARDAAAAAAAGDDVA 60 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L + Q + V +V + +G L++ L + LR+ +++ V+ Sbjct: 61 VVLRRAG---------QGWLDIAAVWAVATSVGAPLADTLREVGTSLREARDIADDVRVA 111 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 E A+A ++ LP L + VL DP G + L A +++ + R + Sbjct: 112 LAEPAATARLLAGLPLVGVPLGAVLGFDTVRVLTADPVGRLCLAAGLALVVMARVWSRRL 171 Query: 183 IN 184 Sbjct: 172 AR 173 >gi|307545368|ref|YP_003897847.1| general secretion pathway protein F [Halomonas elongata DSM 2581] gi|307217392|emb|CBV42662.1| general secretion pathway protein F [Halomonas elongata DSM 2581] Length = 399 Score = 54.0 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 51/160 (31%), Gaps = 9/160 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + AG P+ A+ + Q + + Sbjct: 66 FTQQLATLIAAGQPLDKALTTLHRQLRGARPRALLEALRDDVKAGRPISA----ALARHA 121 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + S F + + G L E LA L L +N++ +V + +++ + Sbjct: 122 ETFSPFYVSLVRAGEASGVLDETLAQLGDDLERSQNLRGEVINAMIYPL---FLVVGVIG 178 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 V+ L+ + P ++ + + G L V A + + Sbjct: 179 SVALLLTYVVPQFVPIFRD--LGVPLPSVTRAILATSGFL 216 >gi|115350534|ref|YP_772373.1| type II secretion system protein [Burkholderia ambifaria AMMD] gi|115280522|gb|ABI86039.1| type II secretion system protein [Burkholderia ambifaria AMMD] Length = 404 Score = 54.0 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 16/164 (9%), Positives = 45/164 (27%), Gaps = 6/164 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + ++AGLP++ ++ ++ ++ D + + G + +++R Sbjct: 65 REVTRFTRQLASLLQAGLPLAPSLEMLARTRTRDGLPRIAAGLAREIVGGQRFAAALARY 124 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L ++ K+ A A Sbjct: 125 PSQFG-----TLYRQLIEVGEASGALGVVLTRVAEHRERADAQWRKLCAALAYPVAVIVF 179 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 ++ + V T + +A + Sbjct: 180 ALAISAALMVWVVPTFRQIFDGFGAALPAPTRALLALSSATSAW 223 Score = 37.4 bits (85), Expect = 0.88, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 41/130 (31%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P++DA A + + ++ G L++++ + Sbjct: 274 WCRSLATLLGAGVPLADAFATLERTAGHPVFEQATAQIAARVLRGARLADAMHAAGCFPD 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ G L LA+++ + + + + A E + + Sbjct: 334 DVVQP------IAVAEETGALDTMLADIAALCERQLDARLDALAALGEPLIVIVLGALVG 387 Query: 138 FCVSTLVYFT 147 V + Sbjct: 388 GLVIAMYLPI 397 >gi|167646053|ref|YP_001683716.1| type II secretion system protein [Caulobacter sp. K31] gi|167348483|gb|ABZ71218.1| type II secretion system protein [Caulobacter sp. K31] Length = 402 Score = 54.0 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 62/192 (32%), Gaps = 28/192 (14%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSES 68 A NA+ + + AGL + A+AV V ++ +++ +V + G LS + Sbjct: 57 AAVRRAVVNAIGELAVLLGAGLSLDRALAVCVENATNPTLKAALAQVQKRVREGAPLSRA 116 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 ++ + + + G LS AL+ L L + ++ V + + Sbjct: 117 MTEAGGLFSP-----MAAAMVEAGEADGRLSVALSRLGETLDRAEALRQVVSSSMIYPAM 171 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR-------------------GHMLLGVAA 169 + G + ++ F P + + + P G +L Sbjct: 172 LTVVTGG---VILMMLLFVVPQFEGLFADSPTQLPLATRMVMGASHLTRAYGLAILLGGG 228 Query: 170 AFMLIGIMVMRL 181 + R Sbjct: 229 VTGVAVWRWFRR 240 >gi|119715490|ref|YP_922455.1| type II secretion system protein [Nocardioides sp. JS614] gi|119536151|gb|ABL80768.1| type II secretion system protein [Nocardioides sp. JS614] Length = 312 Score = 54.0 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 67/159 (42%), Gaps = 2/159 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++ R + L +FP +++ +V AG A+ +V +S + ++ RV+ Sbjct: 156 LTSQVRARERRILAEFPTVAELLALAVAAGEGPVAALDRVVRRSGGELSADLARVLAEIR 215 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++ + M L V+ F+ I+V + G L++ L + +R+ + ++ Sbjct: 216 TGEPVATAFDAMASASGLPLVARFAQGIAVAVERGTPLADVLHAQAADVRE--AGRRELI 273 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159 + + + T+++ PG + + + P Sbjct: 274 EAAARKEVFMMVPVVFLVLPITVLFAFWPGVVGLHLTTP 312 >gi|171059774|ref|YP_001792123.1| type II secretion system protein [Leptothrix cholodnii SP-6] gi|170777219|gb|ACB35358.1| type II secretion system protein [Leptothrix cholodnii SP-6] Length = 412 Score = 54.0 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 21/168 (12%), Positives = 49/168 (29%), Gaps = 4/168 (2%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D + +RAG+P+ A+A + +++ + L + M Sbjct: 72 DLLLFSRQLNTLLRAGVPILRALAGLQESATNEKMK---STLAEVRHSLESGIA-LSMSL 127 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + F + ++ G L E L L M+ +V+A + Sbjct: 128 AQQGKVFDPFYVALVRVGEMTGRLDEVFLRLFHHLEFESAMRQQVKAALRYPIFVVSAMV 187 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 ++ +V + +A++ I + + Sbjct: 188 VALGVINLMVIPAFAPVFEAAGTALPLPTRILMASSRFTIDWGWLMAI 235 Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 14/132 (10%), Positives = 42/132 (31%), Gaps = 5/132 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 S+++G+P++ A++V+ + R +E + +SI R Sbjct: 276 LARFARSFALSLKSGVPIAQALSVVAQTVDN---QHIARKVEGMRTSVERGDSILRSAAA 332 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + G + E + ++ + + + K +E ++ Sbjct: 333 AG--VFTPVVLQMIAVGEETGAVDELMDEVAELYGNEVQYELKTLGQQIEPILIVFLGVL 390 Query: 136 LPFCVSTLVYFT 147 + + Sbjct: 391 VLMLALGVFLPV 402 >gi|157502153|ref|YP_001485252.1| hypothetical protein pBMB67_066 [Bacillus thuringiensis] gi|87133458|gb|ABD24368.1| hypothetical membrane protein [Bacillus thuringiensis] Length = 305 Score = 54.0 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 65/175 (37%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + K+ + L+ + ++ A S A+ I+ P++ + + G Sbjct: 113 YKKKRYELYVEEQLMLYLNSLANAMSAYENPSFAIKSILPLMQSPIKEDVENCLIVHLEG 172 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S+ ES ++ + + F ++ + S+ G + L ++ + +K KAK++A Sbjct: 173 TSIKESFEPLINKYKYKNLKLFHDMLDLISKTGKDEDGLLMRIADEFQQKKIYKAKLKAG 232 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++S I + + + P G ++L + +I + Sbjct: 233 MEPKRSSFKKIAIMTASFPFMFLAVTADDYIAFAGTPTGKIILTLMILVNIICAV 287 >gi|330966306|gb|EGH66566.1| general secretion pathway protein F [Pseudomonas syringae pv. actinidiae str. M302091] Length = 400 Score = 54.0 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + AG P+ ++ +++ Q R+ R+ E G LS ++ Sbjct: 62 AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGKPLSVALEEE 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 S + + GG L L LS L + ++ +V + ++ Sbjct: 122 GSQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + ++ L+ + P ++ + + G + + + +G + Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILDLGQFL 217 >gi|88856328|ref|ZP_01130987.1| hypothetical protein A20C1_00270 [marine actinobacterium PHSC20C1] gi|88814412|gb|EAR24275.1| hypothetical protein A20C1_00270 [marine actinobacterium PHSC20C1] Length = 301 Score = 54.0 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 49/125 (39%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 + P L+ + S+ AG + DAV + S + +E RV+ + + GL E++ Sbjct: 168 LTAELPVVLEFLALSLSAGEGILDAVRRVSQVSGGELSNELARVVASVNTGLPFGETLGA 227 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + R + L + I G LSE L ++ R+ + A E Sbjct: 228 LARELELPPFNRCVDQILGALDRGTPLSEVLQAQAQDAREESKRELLELAGKKEVAMLFP 287 Query: 132 IIGSL 136 ++ L Sbjct: 288 LVSGL 292 >gi|330938347|gb|EGH41975.1| type II secretion system protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 204 Score = 54.0 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 68/157 (43%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + + ++R + + + + ++ +G+ V A+ V+ + + E R V+ Sbjct: 44 LATVARRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLM 103 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL L E + + + + E+S +++ GG ++L L +++ DR+ + Sbjct: 104 RVDSGLELGEELRKTAALLDVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 163 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + AK S ++ L + ++ PG+M + Sbjct: 164 QEYISKLSAKMSVVMMVFLFPALLIVL--AGPGFMAI 198 >gi|167589644|ref|ZP_02382032.1| type II secretion system protein [Burkholderia ubonensis Bu] Length = 264 Score = 54.0 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 59/143 (41%), Gaps = 5/143 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSLSESISRM 72 P+ALD++V AG ++ V + + P+ E + L ++ +++ Sbjct: 120 LPDALDLLVICTMAGNSLASGVRRVAHELARICPPLADELSVCADELTLSGDVAATLTHF 179 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + L +T ++ + G +++AL L+R R + + + +A + K + + Sbjct: 180 ATRVDLPSARSLATTLTQSQRFGTPITQALRTLARTERTEQIVALEERAAKLAPKITLPM 239 Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155 + + V + P + +L Sbjct: 240 MLFILPTVC--LIAAGPAAIRLL 260 >gi|262370046|ref|ZP_06063373.1| general secretion pathway protein F [Acinetobacter johnsonii SH046] gi|262315085|gb|EEY96125.1| general secretion pathway protein F [Acinetobacter johnsonii SH046] Length = 401 Score = 54.0 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 53/163 (32%), Gaps = 11/163 (6%) Query: 9 TAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66 + D + V A +P+ +A+ + QS V++ V G SL+ Sbjct: 58 QKQITAYDLALLTRQLSVLVAAAIPLEEAIRAVGKQSEKAHVQNLLMSVRSKVLEGHSLA 117 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + + + R + G+L L L+ +R M+ K+Q + Sbjct: 118 QGLQQSGR------FPELYIATIAAGERSGHLDLILDQLADYTENRFAMQKKIQGAMIYP 171 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 + ++ V L+ + P + + VA Sbjct: 172 IILMLMSFAI---VMGLMTYVVPDIVKTFDQSKDALPWITVAL 211 >gi|77359205|ref|YP_338780.1| general secretion pathway protein F [Pseudoalteromonas haloplanktis TAC125] gi|76874116|emb|CAI85337.1| putative general secretion pathway protein F [Pseudoalteromonas haloplanktis TAC125] Length = 411 Score = 54.0 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 20/172 (11%), Positives = 51/172 (29%), Gaps = 6/172 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 D + +++ LPV AV + Q ++ V G +L++ +S Sbjct: 70 TSDLALITRQLATLIQSALPVEGAVMAVAEQCEKPRLKRMLMSVRSKVVEGYTLADGMSE 129 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + G+L + L L+ R+ M++++ + Sbjct: 130 FP-----HVFDDLYRAMVAAGEKSGHLDQVLNRLADYTEQRQYMRSQITQAMVYPIILVV 184 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 ++ + V +A + + + L++ Sbjct: 185 FAIAIVSVLLGTVVPKILKTFEKTKQVLPWTTEWVMAGSHFVQNYWFISLIV 236 >gi|116048594|ref|YP_792607.1| putative type II secretion system protein [Pseudomonas aeruginosa UCBPP-PA14] gi|296390958|ref|ZP_06880433.1| putative type II secretion system protein [Pseudomonas aeruginosa PAb1] gi|115583815|gb|ABJ09830.1| probable type II secretion system protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 404 Score = 54.0 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 19/166 (11%), Positives = 55/166 (33%), Gaps = 6/166 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D A + + A LP+ A++ + Q+ + V G+ L+++++ Sbjct: 66 DLAWATRQLASLLAASLPLEAALSATLDQAERKHIAQTLSAVRSDVRGGMRLADALAARP 125 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + + G+L++ + L+ + +R ++ K+ + + Sbjct: 126 R-----DFPEIYRALVAAGEESGDLAQVMERLADYIEERNALRGKILTAFIYPAVVGVVS 180 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + V + D + A+ + + Sbjct: 181 IGIVIFLLGYVVPQVVSAFSQARQDLPALTRAMLQASDFVRAWGWL 226 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 38/130 (29%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ ++ + G+SL+ ++ Sbjct: 273 FASTLAILGSAGVPLLRALDAARQTLANDCLAQAVEEATAQVREGVSLASALRT------ 326 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 Q T + + G L L ++ L +A +E + G + Sbjct: 327 RQVFPPILTHLIASGEKTGALPPMLDRAAQTLSRDIERRAMGMTALLEPLMIVVMGGVVL 386 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 387 TIVMAVLMPI 396 >gi|283788037|ref|YP_003367902.1| T2SS protein F [Citrobacter rodentium ICC168] gi|282951491|emb|CBG91190.1| putative T2SS protein F [Citrobacter rodentium ICC168] Length = 399 Score = 54.0 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 53/163 (32%), Gaps = 6/163 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 D + + A LP+ +A+A+I Q + + S + G SLS ++ Sbjct: 61 DLTLFTRQLATLIAAALPLDEALAIIQQQKENKKLSSVINGLRLAVLEGQSLSRAMQNHP 120 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + G L L L+ R+ M++K+ + + Sbjct: 121 RL-----FDDVFCTLVKAGETVGQLGGVLERLADFNETRQRMRSKLTQALIYPVLLTTVA 175 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + + T V L ++ + +A + L Sbjct: 176 ILVVAILLTTVVPKVAAQFLHLKHELPLTTRILLAISDFLSAW 218 >gi|312795078|ref|YP_004028000.1| Type IV pilus assembly protein tapC [Burkholderia rhizoxinica HKI 454] gi|312166853|emb|CBW73856.1| Type IV pilus assembly protein tapC [Burkholderia rhizoxinica HKI 454] Length = 414 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 5/157 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D A + +R+GL + A+A++ + P++ F V+ G +LS ++ R Sbjct: 76 ADLTRATRHLAMLLRSGLSLQPALALVAQHAGMPLKPLFETVLRDITEGSTLSRALQRHD 135 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R P + ++ G+L LA L+ +A+++ + Sbjct: 136 RVFPAAYWR-----LVELAEHTGSLDTILAQLADTRDRVAAQRARLRNALWYPTLILALA 190 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 L + V T + + VA + Sbjct: 191 LGLCALLLAWVVPTFERVFAGFGSQLPRPTRIVVALS 227 >gi|302671410|ref|YP_003831370.1| type II secretion system protein F GspF [Butyrivibrio proteoclasticus B316] gi|302395883|gb|ADL34788.1| type II secretion system protein F GspF [Butyrivibrio proteoclasticus B316] Length = 351 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/147 (10%), Positives = 51/147 (34%), Gaps = 5/147 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + + + ++AG+ ++ + +++ + D S + + + S + + Sbjct: 14 EISSFCRQMALLIKAGISPAEGIEILLQDTHD--ASAQKLLSSISQVLHSGEKFHIALEM 71 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 E + + + G+L + +LS +N+ + +++ +++ Sbjct: 72 SGAFPE---YMIHMVTIGEESGSLDTVMNSLSEYYEREENISSSIKSAVSYPLIMVFMML 128 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRG 161 + + T V L + G Sbjct: 129 VVVIVLITKVLPIFEQVFAQLGTNMSG 155 >gi|37676258|ref|NP_936654.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016] gi|37200799|dbj|BAC96624.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016] Length = 292 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 49/137 (35%), Gaps = 2/137 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIET 58 + T P LD++ V G+ + + + + D + V Sbjct: 135 ISSRANSITRHISSRLPFLLDLMNVCVHTGMTIEATLEYLANELQTVDKYLAFTVNVTVQ 194 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + +++++ +P E F + Q G ++ + L L+ +R M+ + Sbjct: 195 RSKVIGINKALEEFYEMVPSSEAQSFVMTLIQSLQFGSSVGQVLGTLATDIRQINMMELE 254 Query: 119 VQALSMEAKASAWIIGS 135 + + AK S +I Sbjct: 255 EKIGKLGAKMSIPMIVF 271 >gi|254244923|ref|ZP_04938245.1| hypothetical protein PA2G_05799 [Pseudomonas aeruginosa 2192] gi|126198301|gb|EAZ62364.1| hypothetical protein PA2G_05799 [Pseudomonas aeruginosa 2192] Length = 404 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/166 (11%), Positives = 55/166 (33%), Gaps = 6/166 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D A + + A LP+ A++ + Q+ + V G+ L+++++ Sbjct: 66 DLAWATRQLASLLAASLPLEAALSATLDQAERKHIAQTLSAVRSDVRGGMRLADALAARP 125 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + + G+L++ + L+ + +R ++ K+ + + Sbjct: 126 R-----DFPEIYRALVAAGEESGDLAQVMERLADYIEERNALRGKILTAFIYPAVVGVVS 180 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + V + D + A+ + + Sbjct: 181 IGIVIFLLGYVVPQVVSAFSQARQDLPALTRAMLQASDFVRAWGWL 226 Score = 36.6 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 38/130 (29%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ ++ + G+SL+ ++ Sbjct: 273 FASTLAILGSAGVPLLRALDAARQTLANDCLAQAVEEATAQVREGVSLASALRT------ 326 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 Q T + + G L L ++ L +A +E + G + Sbjct: 327 RQVFPPILTHLIASGEKTGALPPMLDRAAQTLSRDIERRAMGMTALLEPLMIVVMGGVVL 386 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 387 TIVMAVLMPI 396 >gi|15595884|ref|NP_249378.1| type II secretion system protein [Pseudomonas aeruginosa PAO1] gi|107100153|ref|ZP_01364071.1| hypothetical protein PaerPA_01001174 [Pseudomonas aeruginosa PACS2] gi|218893355|ref|YP_002442224.1| putative type II secretion system protein [Pseudomonas aeruginosa LESB58] gi|254239065|ref|ZP_04932388.1| hypothetical protein PACG_05245 [Pseudomonas aeruginosa C3719] gi|9946567|gb|AAG04076.1|AE004503_14 probable type II secretion system protein [Pseudomonas aeruginosa PAO1] gi|126170996|gb|EAZ56507.1| hypothetical protein PACG_05245 [Pseudomonas aeruginosa C3719] gi|218773583|emb|CAW29397.1| probable type II secretion system protein [Pseudomonas aeruginosa LESB58] Length = 404 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/166 (11%), Positives = 55/166 (33%), Gaps = 6/166 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D A + + A LP+ A++ + Q+ + V G+ L+++++ Sbjct: 66 DLAWATRQLASLLAASLPLEAALSATLDQAERKHIAQTLSAVRSDVRGGMRLADALAARP 125 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + + G+L++ + L+ + +R ++ K+ + + Sbjct: 126 R-----DFPEIYRALVAAGEESGDLAQVMERLADYIEERNALRGKILTAFIYPAVVGVVS 180 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + V + D + A+ + + Sbjct: 181 IGIVIFLLGYVVPQVVSAFSQARQDLPALTRAMLQASDFVRAWGWL 226 Score = 36.6 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 38/130 (29%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ ++ + G+SL+ ++ Sbjct: 273 FASTLAILGSAGVPLLRALDAARQTLANDCLAQAVEEATAQVREGVSLASALRT------ 326 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 Q T + + G L L ++ L +A +E + G + Sbjct: 327 RQVFPPILTHLIASGEKTGALPPMLDRAAQTLSRDIERRAMGMTALLEPLMIVVMGGVVL 386 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 387 TIVMAVLMPI 396 >gi|88861066|ref|ZP_01135701.1| putative general secretion pathway protein F [Pseudoalteromonas tunicata D2] gi|88816994|gb|EAR26814.1| putative general secretion pathway protein F [Pseudoalteromonas tunicata D2] Length = 405 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 48/144 (33%), Gaps = 9/144 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 D + +++ LPV AV + QS ++ V G +L++ + Sbjct: 64 TSDLALVTRQLATLIQSALPVEAAVLAVAEQSEKPRLKRMLMAVRSKVVEGYTLADGLGE 123 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + G+L + L L+ R++M++++ + Sbjct: 124 FP-----HIFDNLFRSMVAAGEKSGHLDQVLNRLADYTEQRQHMRSQITQAMVYPT---V 175 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL 155 ++ V+ L+ P + Sbjct: 176 LVVFAIGIVAILLGTVVPKILKTF 199 >gi|330954615|gb|EGH54875.1| type II secretion system protein [Pseudomonas syringae Cit 7] Length = 400 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + AG P+ ++ +++ Q ++ R+ E G LS ++ Sbjct: 62 AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEE 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 S + + GG L L LS L + ++ +V + ++ Sbjct: 122 GSQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + ++ L+ + P ++ + + G + + + +G + Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGQFL 217 >gi|317133736|ref|YP_004089647.1| Type II secretion system F domain [Ruminococcus albus 7] gi|315450198|gb|ADU23761.1| Type II secretion system F domain [Ruminococcus albus 7] Length = 286 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 66/156 (42%), Gaps = 3/156 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +K+ A+F + P LD+ +++ LPV+ A+ + + E R + Sbjct: 130 INDRAQKKKAQFESEIPRFLDLFQTAIKINLPVATAIKITAESIDGILSEELLRALVVTE 189 Query: 61 LGLSLSE-SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 LG S + S+ + + + S F I Q G +++E++ SR ++ + AK Sbjct: 190 LGTSNWQDSLYDIAQKYEVDSFSDFVLDIVTAFQKGSDITESVERQSRSIKSSTLLSAKE 249 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 QA + ++ + +++ P M +L Sbjct: 250 QAAKTTSLILIPVVVFKMIPLMIILFL--PVIMQIL 283 >gi|115358176|ref|YP_775314.1| type II secretion system protein [Burkholderia ambifaria AMMD] gi|115283464|gb|ABI88980.1| type II secretion system protein [Burkholderia ambifaria AMMD] Length = 314 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 57/135 (42%), Gaps = 3/135 (2%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSES 68 FP+ALD++V AG ++ V + + P+ E + L ++SE+ Sbjct: 166 IAACFPDALDLLVICTMAGNSLASGVRRVARELQRICPPLADELTVCADELTLSGNVSEA 225 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 ++ + +T ++ + G +++AL LSR R + + + +A + K Sbjct: 226 LAHFALRVNFSSARSLATTLTQSQRFGTPITQALRTLSRSERTEQVVALEEKAAKLAPKI 285 Query: 129 SAWIIGSLPFCVSTL 143 + ++ + V + Sbjct: 286 TVPMMLFILPTVGLI 300 >gi|30249238|ref|NP_841308.1| type II secretion system protein [Nitrosomonas europaea ATCC 19718] gi|30180557|emb|CAD85167.1| Bacterial type II secretion system protein [Nitrosomonas europaea ATCC 19718] Length = 406 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 60/178 (33%), Gaps = 12/178 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + I V +GL + A+ V+ Q + P R ++ G LS+++ Sbjct: 66 RDVALFCEQIGTMVGSGLNIEQALQVVSRQKGNRPSARMARHLLPRIQAGGPLSDALDI- 124 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + ++ GG L+E L R L+ + + +A++ Sbjct: 125 -----EVGMPRYLPSMIRAAESGGRLAEGLETAGRYLQRQASTRAEIANALTYPVIVLVT 179 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-----IMVMRLMINF 185 + V T+V + G + + + + ++ M ++ Sbjct: 180 VMIALLIVLTVVIPGFEPIFAGEEHRLPGMTRFVLWLSDLAVNHAITSLLWMGAILAI 237 >gi|189016767|ref|YP_001711806.1| hypothetical protein CMS_pCSL0077 [Clavibacter michiganensis subsp. sepedonicus] gi|167728938|emb|CAQ03320.1| putative membrane protein [Clavibacter michiganensis subsp. sepedonicus] Length = 288 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 17/171 (9%), Positives = 49/171 (28%), Gaps = 2/171 (1%) Query: 10 AKFLDDFPNALDIIVRSVRAG-LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 L + + G + + + + + +R R+ S +++ Sbjct: 95 RDLLSALEAWTRSLAATADTGTFTLREVIDLSRTAAPPILRVTVDRLNNRMSGSWSNTDA 154 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAK 127 + + + ++ LS AL L+ L + + + + + Sbjct: 155 LRAFADELDSAWADEVVIYLIQAAEFNAGGLSTALEGLADNLATQVKQRRLIYNERDKPR 214 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + + V + S + P G +L V + ++ Sbjct: 215 RTLVQMTGIVGFVLACIVVFSGSPQLASFSTPLGQSILVVIIGMFALILVW 265 >gi|28870480|ref|NP_793099.1| general secretion pathway protein F [Pseudomonas syringae pv. tomato str. DC3000] gi|213970082|ref|ZP_03398214.1| general secretion pathway protein F [Pseudomonas syringae pv. tomato T1] gi|301381439|ref|ZP_07229857.1| general secretion pathway protein F [Pseudomonas syringae pv. tomato Max13] gi|302132993|ref|ZP_07258983.1| general secretion pathway protein F [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28853727|gb|AAO56794.1| general secretion pathway protein F [Pseudomonas syringae pv. tomato str. DC3000] gi|213925186|gb|EEB58749.1| general secretion pathway protein F [Pseudomonas syringae pv. tomato T1] gi|331017221|gb|EGH97277.1| general secretion pathway protein F [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 400 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + AG P+ ++ +++ Q R+ R+ E G LS ++ Sbjct: 62 AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGKPLSVALEEE 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 S + + GG L L LS L + ++ +V + ++ Sbjct: 122 GSQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + ++ L+ + P ++ + + G + + + +G + Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILDLGQFL 217 >gi|253988608|ref|YP_003039964.1| type IV pilin biogenesis protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780058|emb|CAQ83219.1| protein transport protein hofc [Photorhabdus asymbiotica] Length = 399 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 16/139 (11%), Positives = 44/139 (31%), Gaps = 6/139 (4%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYM 76 N + + + +G+P+ + + +++ + S+P+ + + G S S S+ Sbjct: 63 NFIRQLATLLSSGMPLLNCLNILIRECSNPLWHCVLSDISKRITRGESFSTSLKNYPFLF 122 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 P + +L G L L + + ++ K+ + + Sbjct: 123 PP-----LFYQLIAVGELTGQLEICCQLLIKQQEQQDKLQKKIAKALRYPLIIIVVANII 177 Query: 137 PFCVSTLVYFTSPGYMNVL 155 + V + Sbjct: 178 ILLMLIFVLPEFEHIYHSF 196 >gi|228942720|ref|ZP_04105248.1| Hypothetical membrane protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975831|ref|ZP_04136361.1| Hypothetical membrane protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982328|ref|ZP_04142604.1| Hypothetical membrane protein [Bacillus thuringiensis Bt407] gi|228777433|gb|EEM25724.1| Hypothetical membrane protein [Bacillus thuringiensis Bt407] gi|228783857|gb|EEM31906.1| Hypothetical membrane protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816931|gb|EEM63028.1| Hypothetical membrane protein [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 305 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 65/175 (37%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + K+ + L+ + ++ A S A+ I+ P++ + + G Sbjct: 113 YKKKRYELYVEEQLMLYLNSLANAMSAYENPSFAIKSILPLMQSPIKEDVENCLIVHLEG 172 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S+ ES ++ + + F ++ + S+ G + L ++ + +K KAK++A Sbjct: 173 TSIKESFEPLINKYKYKNLKLFHDMLDLISKTGKDEDGLLMRIADEFQQKKIYKAKLKAG 232 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++S I + + + P G ++L + +I + Sbjct: 233 MEPKRSSFKKIAIMTASFPFMFLAVTADDYIAFAGTPTGKIILTLMILVNIICAV 287 >gi|257790307|ref|YP_003180913.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|325830125|ref|ZP_08163582.1| type II secretion system protein F domain protein [Eggerthella sp. HGA1] gi|257474204|gb|ACV54524.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|325487592|gb|EGC90030.1| type II secretion system protein F domain protein [Eggerthella sp. HGA1] Length = 312 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 16/141 (11%), Positives = 43/141 (30%), Gaps = 1/141 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K ++R D L+++ +R+GL A+ + Sbjct: 156 VKRAQRERADGLESDLSEMLEVVALGLRSGLSFDRGFALYGSHFDSDLARACVGAQHAWS 215 Query: 61 LG-LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 LG + +++ + + + + G +L+E L + + R + + Sbjct: 216 LGLTNREDALRDLAASYDSPLFARVVENMVRSLRFGSSLAEGLESAAAEARAVHRAQVEE 275 Query: 120 QALSMEAKASAWIIGSLPFCV 140 + K + + Sbjct: 276 RVAKAPVKMMVPTGTLILPAM 296 >gi|167760287|ref|ZP_02432414.1| hypothetical protein CLOSCI_02660 [Clostridium scindens ATCC 35704] gi|167662170|gb|EDS06300.1| hypothetical protein CLOSCI_02660 [Clostridium scindens ATCC 35704] Length = 382 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 51/157 (32%), Gaps = 9/157 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--------DPVRSEF 52 ++ +++ + + D+P ++ + + AG+ V A +V E Sbjct: 221 IRKEGEEKKRQMMLDYPEIVNKLALFLGAGMTVKRAWRKVVEDYERHKTDGNARHAYEEM 280 Query: 53 RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANL-SRILRD 111 ++ G+ +ES R +Q ++S + G L L S + Sbjct: 281 KKACYEMESGVMETESYENFGRRCNVQSYIRLGALLSQNLRKGTKGLTHLLRLESIQAFE 340 Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 + +AK K + L + ++ Sbjct: 341 ERKARAKRLGEEAGTKLLLPMFLMLAIVLIIVIVPAF 377 >gi|118475095|ref|YP_892177.1| type II secretion system protein [Campylobacter fetus subsp. fetus 82-40] gi|118414321|gb|ABK82741.1| type II secretion system protein [Campylobacter fetus subsp. fetus 82-40] Length = 413 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 64/167 (38%), Gaps = 8/167 (4%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPL 78 + + AG+ + D++ ++ ++D F V + + G+S++ES++ Sbjct: 79 IRQLSVMTNAGISIHDSIKEVIKSTTDKRLKLIFENVNDDLNAGMSITESLNLYSD---- 134 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 E+ + + GN++E+L L+ IL++ + + K + I Sbjct: 135 -ELGNVVIAMVRLGEESGNMAESLQKLAEILQEIWDNQRKFKKAIRYPTLVICAIAIAFV 193 Query: 139 CVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVMRLMI 183 + LV T L + +LL + G + + ++ Sbjct: 194 LLMVLVVPTFRDIFEQLNAELPLPTRILLNIEYLITNYGFICLGGIV 240 >gi|330889707|gb|EGH22368.1| general secretion pathway protein GspF [Pseudomonas syringae pv. mori str. 301020] Length = 400 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + AG P+ ++ +++ Q ++ R+ E G LS ++ Sbjct: 62 AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEE 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 S + + GG L L LS L + ++ +V + ++ Sbjct: 122 GTQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + ++ L+ + P ++ + + G + + + +G + Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGQFL 217 >gi|323525750|ref|YP_004227903.1| Type II secretion system F domain-containing protein [Burkholderia sp. CCGE1001] gi|323382752|gb|ADX54843.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1001] Length = 367 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 58/144 (40%), Gaps = 5/144 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHLGLSLSESIS 70 D+ P +D++ GL + ++ V+V + SE G + +S+S Sbjct: 217 DELPMLVDLLRLLQGVGLSLDQSLQVMVNDFRGVLPVLSSELDIAQRQFAAGRTREQSLS 276 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 R+ +++ ++ + GG + E L LR+ + + + M K + Sbjct: 277 RLASSFENEDLRAVVRLLIQVDRHGGAVQEPLKQFGDRLRETRRAMLRERIGRMAVKMTG 336 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNV 154 +I +L + ++ PG ++V Sbjct: 337 VMILTLLPAL--MIVTAGPGVLSV 358 >gi|183221064|ref|YP_001839060.1| general secretion pathway protein F [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911158|ref|YP_001962713.1| type II secretory pathway protein F [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775834|gb|ABZ94135.1| Type II secretory pathway component, protein F [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779486|gb|ABZ97784.1| General secretion pathway protein F [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 408 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 16/159 (10%), Positives = 42/159 (26%), Gaps = 4/159 (2%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + AG+P+ + I+ Q + +V+ ++ Sbjct: 72 FCKQLGTLIGAGIPLDKCLLSIIDQVENIYFK---KVLIEMRADIT-EGMSLSESMKKHK 127 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + GN L L+ + +K+KVQ + + + Sbjct: 128 TVFPDQYPSLISVGESTGNYENTLHRLAELEEKSSELKSKVQVAMIYPMIMGLLSLGVSI 187 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + +V + +++L Sbjct: 188 FLLVVVIPQIEQLFASFDAKLPLLTRAVIFLSYVLTNYW 226 >gi|157363368|ref|YP_001470135.1| type II secretion system protein [Thermotoga lettingae TMO] gi|157313972|gb|ABV33071.1| type II secretion system protein [Thermotoga lettingae TMO] Length = 397 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 61/173 (35%), Gaps = 12/173 (6%) Query: 1 MKHLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRR 54 ++ + +++ + L+ + + V AG+ + DA++++ Q S R Sbjct: 42 VQQVSSRKSRELLNVSLSELVVFSRQLATMVGAGVRIKDALSILSNQVVFSSRFRKIINH 101 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 ++ + G S SE++ + + GG L + L + K Sbjct: 102 LVVSLETGSSFSEALRNEG------VFDSIFINLVSAGEEGGVLDKTLDKAAEFYESSKR 155 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 ++ +V++ + F +S + G + + L+GV Sbjct: 156 LQDEVKSAMAYPMFVLVFAIGVIFVISFYILPRLIGAFGSIPSSGIIGFLMGV 208 Score = 37.4 bits (85), Expect = 0.94, Method: Composition-based stats. Identities = 19/131 (14%), Positives = 44/131 (33%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAV-IVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + +G+ ++ A+ + +S + + + V E G SL +++ Sbjct: 265 FCRTLSVLTGSGVLLTKAIEMSAAASNSPKMVKKSKIVSERVKEGASLRQAMIEA----- 319 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G L E LA ++ ++ + K +E A + G + Sbjct: 320 -TIFPQIVYELVGTGEETGKLEEVLAKVADFYEEQVRIGVKKLVSLVEPMLIAGVGGFIA 378 Query: 138 FCVSTLVYFTS 148 F T+ Sbjct: 379 FMAFTMYNTIF 389 >gi|300722074|ref|YP_003711354.1| type IV pilin biogenesis transmembrane protein [Xenorhabdus nematophila ATCC 19061] gi|297628571|emb|CBJ89145.1| component in type IV pilin biogenesis, transmembrane protein [Xenorhabdus nematophila ATCC 19061] Length = 399 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 23/198 (11%), Positives = 58/198 (29%), Gaps = 26/198 (13%) Query: 2 KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 K +I R + + + + + +G+P+ + +++ R + +I+ Sbjct: 48 KRMIHYREKEMTYRQ--HFIHQLSTLLTSGIPLLRGLIILLQDCKLALWRCVLKDMIQKI 105 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G S S +++ + S I + G L + L + ++ K+ Sbjct: 106 SQGESFSSTLAYYPKL-----FSPLFCQIIAVGEQTGQLENCCQLIISQLEQQNMLQKKI 160 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR----------------GHM 163 Q A++ + + V + G Sbjct: 161 QKAYRYPLIVAFVTLLVILLMLIFVLPEFRQVYSSFNATLPLLTQWVLSGSDFLIHHGLF 220 Query: 164 LLGVAAAFMLIGIMVMRL 181 L + + G + +R Sbjct: 221 TLLIIFILLT-GYLWLRK 237 >gi|71736449|ref|YP_275239.1| general secretion pathway protein GspF [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557002|gb|AAZ36213.1| general secretion pathway protein GspF [Pseudomonas syringae pv. phaseolicola 1448A] gi|320323741|gb|EFW79825.1| general secretion pathway protein F [Pseudomonas syringae pv. glycinea str. B076] gi|320327883|gb|EFW83888.1| general secretion pathway protein F [Pseudomonas syringae pv. glycinea str. race 4] Length = 400 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + AG P+ ++ +++ Q ++ R+ E G LS ++ Sbjct: 62 AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEE 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 S + + GG L L LS L + ++ +V + ++ Sbjct: 122 GTQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + ++ L+ + P ++ + + G + + + +G + Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGQFL 217 >gi|331010776|gb|EGH90832.1| general secretion pathway protein GspF [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 400 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + AG P+ ++ +++ Q R+ R+ E G LS ++ Sbjct: 62 AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGKPLSVALEEE 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 S + + GG L L LS L + ++ +V + ++ Sbjct: 122 GTQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + ++ L+ + P ++ + + G + + + +G + Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGQFL 217 >gi|166154785|ref|YP_001654903.1| general secretion pathway protein F [Chlamydia trachomatis 434/Bu] gi|166155660|ref|YP_001653915.1| general secretion pathway protein F [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301336060|ref|ZP_07224304.1| general secretion pathway protein F [Chlamydia trachomatis L2tet1] gi|165930773|emb|CAP04270.1| general secretion pathway protein F [Chlamydia trachomatis 434/Bu] gi|165931648|emb|CAP07224.1| general secretion pathway protein F [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 391 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 23/193 (11%), Positives = 58/193 (30%), Gaps = 15/193 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 ++ + ++ + + +R+G+ + DA+ + Q + ++E Sbjct: 42 IRKVRERNYRVTTTELVIFTKQLALLLRSGISLYDALTSLRDQYQGHALAGVLTSLMEAL 101 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SE+++R F + GNL AL N+ ++L +++ + + Sbjct: 102 RSGGVFSEALARFP-----HIFDSFYQNSVRSGESIGNLEGALMNIIKVLEEKEKLSKSL 156 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG---------VAAA 170 A ++ V T + + Sbjct: 157 AAALSYPAILLVFSCAVVVFFLIGVIPTLKETFEDMEMTRLTKAVFSCSTWFCRYKFLVL 216 Query: 171 FMLIGIMVMRLMI 183 IG + ++ Sbjct: 217 LGGIGGAISLRIV 229 >gi|159042209|ref|YP_001541461.1| type II secretion system protein [Caldivirga maquilingensis IC-167] gi|157921044|gb|ABW02471.1| type II secretion system protein [Caldivirga maquilingensis IC-167] Length = 590 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 21/177 (11%), Positives = 57/177 (32%), Gaps = 8/177 (4%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSE 67 F + L ++G ++ + + + + + + G+ + Sbjct: 375 RRSLERAFSDFLRDFTELRKSGFTPEKIISTLADTRDYGALSRYLKDISKQIRYGIPIRV 434 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +S + F+ ++ + GG E L +L+ + + A + Sbjct: 435 VLSEFMNRTRSYYARVFAWLLLESIEYGGATPETLESLASFSSLMIRINDDLLARLKPLR 494 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP-------RGHMLLGVAAAFMLIGIM 177 +I + ++ FT G +V ++ P G L + ++G++ Sbjct: 495 FVPYIGAMILTLTLVIMVFTVVGLSSVFLHIPQYYVNYVVGSFALTIVVDSFVMGLV 551 Score = 34.7 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 16/144 (11%), Positives = 45/144 (31%), Gaps = 2/144 (1%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQHLGLSLSES 68 K + P + ++GL V+ A+ + + V++ + +G+ + Sbjct: 117 KVDSELPFFAAYLAMISQSGLSVTSAIERLANIRLLEAIGKIAREIVVKNKAIGMDPLTA 176 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 ++ P + GG++ L + + K + A + Sbjct: 177 LTESALSTPSHLFQNLIMGYVTNVRTGGDILHYLEIRLNEIVNDTLDKIRRGAEFLSTLM 236 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYM 152 ++I + + V + + Sbjct: 237 ESYIGAGVILLIGLNVLYLAQAIT 260 >gi|183602333|ref|ZP_02963700.1| hypothetical protein BIFLAC_00684 [Bifidobacterium animalis subsp. lactis HN019] gi|219682691|ref|YP_002469074.1| type II secretion system protein [Bifidobacterium animalis subsp. lactis AD011] gi|241190267|ref|YP_002967661.1| Flp pilus assembly protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195673|ref|YP_002969228.1| Flp pilus assembly protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218547|gb|EDT89191.1| hypothetical protein BIFLAC_00684 [Bifidobacterium animalis subsp. lactis HN019] gi|219620341|gb|ACL28498.1| type II secretion system protein [Bifidobacterium animalis subsp. lactis AD011] gi|240248659|gb|ACS45599.1| Flp pilus assembly protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250227|gb|ACS47166.1| Flp pilus assembly protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793254|gb|ADG32789.1| Flp pilus assembly protein [Bifidobacterium animalis subsp. lactis V9] Length = 244 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 23/192 (11%), Positives = 58/192 (30%), Gaps = 27/192 (14%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQ-------------------SSDPVRSEFRRVIETQ 59 L I+ S++AG + A+ +S + + Sbjct: 49 MLSSIIASLQAGAALEPALERAFDSVFPERRCGGARARHMRDPTTSGDGHAVGVYAVCDG 108 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVIS--------VQSQLGGNLSEALANLSRILRD 111 + +++ E + ++ V +LG + L + Sbjct: 109 EGNVDVTQMARLFAACRLPHERASHCAQVACGVAVASAVSLELGCPAARCLEAVRAGYLR 168 Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 + K++A ++ +LP V L + +L +G +L + Sbjct: 169 ARLQDDLRANAFAMPKSTARMLLALPAVVVFLGELLGADPLGMLFGSAQGRAMLCLGTIC 228 Query: 172 MLIGIMVMRLMI 183 + G++ M+ ++ Sbjct: 229 YVGGLLWMQRLL 240 >gi|317489756|ref|ZP_07948255.1| hypothetical protein HMPREF1023_01954 [Eggerthella sp. 1_3_56FAA] gi|316911102|gb|EFV32712.1| hypothetical protein HMPREF1023_01954 [Eggerthella sp. 1_3_56FAA] Length = 312 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/141 (11%), Positives = 43/141 (30%), Gaps = 1/141 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K ++R D L+++ +R+GL A+ + Sbjct: 156 VKRAQRERADGLESDLSEMLEVVALGLRSGLSFDRGFALYGSHFDSDLARACVGAQHAWS 215 Query: 61 LG-LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 LG + +++ + + + + G +L+E L + + R + + Sbjct: 216 LGLTNREDALRDLAASYDSPLFARVVESMVRSLRFGSSLAEGLESAAAEARAVHRAQVEE 275 Query: 120 QALSMEAKASAWIIGSLPFCV 140 + K + + Sbjct: 276 RVAKAPVKMMVPTGTLILPAM 296 >gi|298487498|ref|ZP_07005542.1| General secretion pathway protein F [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158013|gb|EFH99089.1| General secretion pathway protein F [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330987893|gb|EGH85996.1| general secretion pathway protein GspF [Pseudomonas syringae pv. lachrymans str. M301315] Length = 400 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + AG P+ ++ +++ Q ++ R+ E G LS ++ Sbjct: 62 AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEE 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 S + + GG L L LS L + ++ +V + ++ Sbjct: 122 GTQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + ++ L+ + P ++ + + G + + + +G + Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGQFL 217 >gi|291303312|ref|YP_003514590.1| type II secretion system protein [Stackebrandtia nassauensis DSM 44728] gi|290572532|gb|ADD45497.1| type II secretion system protein [Stackebrandtia nassauensis DSM 44728] Length = 220 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 58/144 (40%), Gaps = 4/144 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P ALD+ + +G P+ A++ + + + FRR + LG +L+E+ + + Sbjct: 79 LPFALDVFAACLHSGAPLDRALSTCAEAVNPALANRFRRAARSLTLGATLAEA---LTEF 135 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII-G 134 L + I + G L+++L L++ LR + A A + Sbjct: 136 DSLADGHRLVQTIGRSADTGARLADSLHLLAKELRFDREQAALSHAHRAGVWMVLPLCLC 195 Query: 135 SLPFCVSTLVYFTSPGYMNVLIND 158 LP ++ + ++ ++N Sbjct: 196 FLPAFIAAGLLPVVISSLDGILNT 219 >gi|153950854|ref|YP_001399939.1| general secretion pathway protein F [Yersinia pseudotuberculosis IP 31758] gi|152962349|gb|ABS49810.1| general secretion pathway protein F [Yersinia pseudotuberculosis IP 31758] Length = 400 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 26/207 (12%), Positives = 62/207 (29%), Gaps = 34/207 (16%) Query: 5 IKKRTAKFLD----------DFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFR 53 IKKR F D I V A +P+ + + ++ Q S + + Sbjct: 42 IKKRILLFNKYVVKKNSNKTDLVLITRQIATLVNASMPLDEVLDIVGKQNSKSKMIEIIQ 101 Query: 54 RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 R+ G S ++++S S + ++ G+L L L+ + + Sbjct: 102 RIRVNIQEGHSFADALSPFPA-----VFSPLYKTMVTAGEVSGHLGLVLVRLAEHIEQTQ 156 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML--------- 164 ++ K+ + ++ + L+ P + L Sbjct: 157 KIQRKIIQALIYP---CVLVLISLSVIVILLTAVVPNIVEQFSFSETALPLSTKVLMILS 213 Query: 165 ------LGVAAAFMLIGIMVMRLMINF 185 + A + ++ + ++ Sbjct: 214 YSIKENVIFIIAIGVSAVIFLNRLLKI 240 >gi|313893588|ref|ZP_07827157.1| type II secretion system protein F domain protein [Veillonella sp. oral taxon 158 str. F0412] gi|313441859|gb|EFR60282.1| type II secretion system protein F domain protein [Veillonella sp. oral taxon 158 str. F0412] Length = 391 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 21/177 (11%), Positives = 59/177 (33%), Gaps = 14/177 (7%) Query: 1 MKHLIKKRTAKFLDDFP-NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 + ++K+ K+ + + + +G+P+ A+ ++ + + IE Sbjct: 42 ISLQVEKKKHKWNHAMVVDVTYQLGLLIESGVPLRRALQLLCQGKRGLLYTALYESIERG 101 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + + + + + + + G L E+L +SR + ++ KV Sbjct: 102 QT----------LSQALRSEGCPAIALALLESGEAAGTLGESLQYISRHYDWERQLRQKV 151 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + +++ + + F P + V L+ A + G+ Sbjct: 152 MSAISYPI---FLLLMMNVFFLVTILFIIPSFEKVFTTMHITLPLMTRALFALGQGL 205 >gi|152968689|ref|YP_001333798.1| type IV pilin biogenesis protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150953538|gb|ABR75568.1| component in type IV pilin biogenesis, transmembrane protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 401 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 46/156 (29%), Gaps = 4/156 (2%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + ++AGLP+++ ++++ Q S + + Sbjct: 62 ETIRQLATLLQAGLPLAEGLSLLAQQQSHAQWQALLEALGRELAQG----VAFSAALAQW 117 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 Q + +L G L L+ ++++ + +KV+ + + Sbjct: 118 PQAFPPLYLAMISTGELTGKLDICCLQLANQQQEQQRLASKVKKALRYPLIVLSLALLVV 177 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + V + VAA ML Sbjct: 178 LGMLYFVLPEFTAIYQTFSTPLPLLTRMVVAAGDML 213 Score = 38.6 bits (88), Expect = 0.43, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 39/136 (28%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 I+ + AG+ + + S R + G + +++SR Sbjct: 261 QQLSLIFTILALTQSAGISFLQGLQSVEESLSCPLWRQRLAQARALIVQGEPIWQALSRC 320 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P + + G L + L NL+ R + +A A +E Sbjct: 321 GGFTP------LCLQLIRTGESAGALDQMLENLAHHHRQQTYQRADSLAAHLEPMMLVIT 374 Query: 133 IGSLPFCVSTLVYFTS 148 + V + Sbjct: 375 GSLVGILVVAMYLPVF 390 >gi|160896747|ref|YP_001562329.1| type II secretion system protein [Delftia acidovorans SPH-1] gi|160362331|gb|ABX33944.1| type II secretion system protein [Delftia acidovorans SPH-1] Length = 405 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 59/183 (32%), Gaps = 8/183 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQH 60 + L K R DD + +RAGL + +A+ V+V S + V+++ Sbjct: 56 RALKKGRIKA--DDIQGMTTELAIMMRAGLSLDNALKVLVEMSHKVQMQAMLQSVLDSVK 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ LS+++ + F + + G +S L L + ++ ++ V Sbjct: 114 AGMPLSQALGKHHDLFGD-----FYINMVRSGEASGQMSGVLNRLVEHMARQRALRDSVV 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + ++ + + V N + + + Sbjct: 169 SATIYPAILLGVAVLSLVAMLGFVVPQFEQLFNDMGDALPLPTQFVMGLGHAFRSYGWAV 228 Query: 181 LMI 183 ++ Sbjct: 229 FIV 231 Score = 34.3 bits (77), Expect = 6.9, Method: Composition-based stats. Identities = 15/133 (11%), Positives = 36/133 (27%), Gaps = 5/133 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + + G+ + A+ + S+ E +G + E Sbjct: 270 QLTLFSRSLGTLLGNGVTLLTALRIASDTVSNVAIRERLE-----KMGPMVKEGHRMAHA 324 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 E + + + G L + + LS IL K +E + Sbjct: 325 AQKTGEFEPLALNLVRVGEETGRLGDMMLELSNILNREVENAIKRLLTMLEPALILVLGI 384 Query: 135 SLPFCVSTLVYFT 147 + + +++ Sbjct: 385 LIASIIVSILLGI 397 >gi|187476846|ref|YP_784870.1| general secretion pathway protein F [Bordetella avium 197N] gi|115421432|emb|CAJ47937.1| general secretion pathway protein F [Bordetella avium 197N] Length = 397 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/162 (12%), Positives = 53/162 (32%), Gaps = 6/162 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISR 71 D + + A LP+ A+ + + Q+ + V + G LS +++ Sbjct: 57 DADLAWLTRQLASLLAASLPLDAALTITLEQAEKRHIATTLTGVRDDVRAGHKLSSALAS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 R + + + G+LS+ + L+ + +R +++KV + Sbjct: 117 RPR-----DFPEIYRALIGAGEESGDLSQVMEKLAHYIEERNALRSKVLTAFIYPVVVGA 171 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + + + V + + +A + + Sbjct: 172 VSVLIVIFLLGYVVPQVVSAFSHAKQQLPLLTRIMLALSDYV 213 Score = 35.5 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 39/130 (30%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESISRMVRYMP 77 + +G+P+ A+ ++ V + SLS +++R Sbjct: 266 FASTLAILCGSGVPILAALDAARRTMTNDVLRTAVQEAAEHVGKGASLSGALAR------ 319 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L E L +R L +A +E + G + Sbjct: 320 RKVFPPILIHLVASGEKTGQLPELLDQCARNLSRDLERRALAMTALLEPALILVMGGLVL 379 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 380 LIVLAVMMPI 389 >gi|238893085|ref|YP_002917819.1| type IV pilin biogenesis protein [Klebsiella pneumoniae NTUH-K2044] gi|238545401|dbj|BAH61752.1| type IV pilin biogenesis transmembrane protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 401 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 46/156 (29%), Gaps = 4/156 (2%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + ++AGLP+++ ++++ Q S + + Sbjct: 62 ETIRQLATLLQAGLPLAEGLSLLAQQQSHAQWQALLEALGRELAQG----VAFSAALAQW 117 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 Q + +L G L L+ ++++ + +KV+ + + Sbjct: 118 PQAFPPLYLAMISTGELTGKLDICCLQLANQQQEQQRLASKVKKALRYPLIVLSLALLVV 177 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + V + VAA ML Sbjct: 178 LGMLYFVLPEFTAIYQTFSTPLPLLTRMVVAAGDML 213 Score = 38.6 bits (88), Expect = 0.43, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 39/136 (28%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 I+ + AG+ + + S R + G + +++SR Sbjct: 261 QQLSLIFTILALTQSAGISFLQGLQSVEESLSCPLWRQRLAQARALIVQGEPIWQALSRC 320 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P + + G L + L NL+ R + +A A +E Sbjct: 321 GGFTP------LCLQLIRTGESAGALDQMLENLAHHHRQQTYQRADSLAAHLEPMMLVIT 374 Query: 133 IGSLPFCVSTLVYFTS 148 + V + Sbjct: 375 GSLVGILVVAMYLPVF 390 >gi|170696831|ref|ZP_02887931.1| type II secretion system protein [Burkholderia graminis C4D1M] gi|170138259|gb|EDT06487.1| type II secretion system protein [Burkholderia graminis C4D1M] Length = 372 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 59/147 (40%), Gaps = 5/147 (3%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHLGLSLSE 67 +D+ P +D++ GL + ++ V+V + SE G + + Sbjct: 219 AVVDELPMLVDLLRLLQGVGLSLDQSLQVMVNDFRGVLPVLASELEIAQGQFAAGRTREQ 278 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 S+SR+ +++ ++ + GG + E L LR+ + + + M K Sbjct: 279 SLSRLASSFDNEDLRAVVRLLIQVDRHGGAVQEPLKQFGDRLRETRRAMLRERIGRMAVK 338 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + +I +L + ++ PG M+V Sbjct: 339 MTGVMILTLLPAL--MIVTAGPGVMSV 363 >gi|219856774|ref|YP_002473896.1| hypothetical protein CKR_3431 [Clostridium kluyveri NBRC 12016] gi|219570498|dbj|BAH08482.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 298 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 64/177 (36%), Gaps = 2/177 (1%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSE 67 + AL I+ + + AV + + PV F+ + L + E Sbjct: 117 KKDIAAELETALSIVTTAYLRSENILTAVEENLHYLNPPVHQVFKDFVLRVKLIDPDVLE 176 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +I + + + + + +L L + L D + + +++ L E + Sbjct: 177 AIKVLRTKIDNEVFREWCDALCDCQH-DRSLKVTLTPIVSKLSDMRIVNGELEYLVFEPR 235 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 I+ L+Y + + + L++ P G ++L ++AA + + + + Sbjct: 236 KEFIIMVIFVIGNIPLMYLLNKSWYDTLMHTPLGQIILAISAALIFVSTACVLKLTK 292 >gi|330958211|gb|EGH58471.1| type II secretion system protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 400 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + AG P+ ++ +++ Q R+ R+ E G LS ++ Sbjct: 62 AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGKPLSVALEEE 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 S + + GG L L LS L + ++ +V + ++ Sbjct: 122 GSQ-----FSPLYISMVRAGEAGGALEGTLRQLSDYLERSQLLRGEVINALIYPA---FL 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + ++ L+ + P ++ + + G + + + +G + Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILDLGQFL 217 >gi|266623926|ref|ZP_06116861.1| putative bacterial type II secretion system protein F domain protein [Clostridium hathewayi DSM 13479] gi|288864258|gb|EFC96556.1| putative bacterial type II secretion system protein F domain protein [Clostridium hathewayi DSM 13479] Length = 350 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 22/181 (12%), Positives = 55/181 (30%), Gaps = 21/181 (11%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 + I +RA +P+ + ++V+ + + + + E LG S + + Sbjct: 12 RELSAFCLQISLLLRAAIPLDEGLSVMAEDAADEEEKKILLHMSEEVELGSPFSAVLQEV 71 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + ++ + G L + +A+LS + ++ ++ Sbjct: 72 G------SYPSYVIKMAKLGEETGTLDQMMASLSEYYEKEYILMKSIKNAVTYPIIMIFM 125 Query: 133 IGSLPFCVSTLVYFTSPGYMNV--------------LINDPRGHMLLGVAAAFMLIGIMV 178 + + F + T V L G L ++ GI+ Sbjct: 126 LLVVLFVLFTKVMPIFESVYEQLGARLSPVSMAATRLGGMFSGVALAAGVLLAVVAGIIW 185 Query: 179 M 179 + Sbjct: 186 L 186 >gi|119472774|ref|ZP_01614711.1| putative general secretion pathway protein F [Alteromonadales bacterium TW-7] gi|119444733|gb|EAW26038.1| putative general secretion pathway protein F [Alteromonadales bacterium TW-7] Length = 411 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/172 (11%), Positives = 50/172 (29%), Gaps = 6/172 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 + + +++ LPV AV + Q ++ V G +L++ +S Sbjct: 70 TSELALITRQLATLIQSALPVEGAVMAVAEQCEKPRLKRMLMSVRSKVVEGYTLADGMSE 129 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + G+L + L L+ R++M++++ + Sbjct: 130 FP-----HVFDDLYRSMVAAGEKSGHLDQVLNRLADYTEQRQHMRSQITQAMVYPTILVI 184 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + V +A + + + L+ Sbjct: 185 FAIGIVSVLLGTVVPKILKTFEKTKQVLPWTTEWVMAGSHFVQNYWFISLLA 236 >gi|326943832|gb|AEA19722.1| Hypothetical membrane protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 316 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 65/175 (37%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + K+ + L+ + ++ A S A+ I+ P++ + + G Sbjct: 124 YKKKRYELYVEEQLMLYLNSLANAMSAYENPSFAIKSILPLMQSPIKEDVENCLIVHLEG 183 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S+ ES ++ + + F ++ + S+ G + L ++ + +K KAK++A Sbjct: 184 TSIKESFEPLINKYKYKNLKLFHDMLDLISKTGKDEDGLLMRIADEFQQKKIYKAKLKAG 243 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++S I + + + P G ++L + +I + Sbjct: 244 MEPKRSSFKKIAIMTASFPFMFLAVTADDYIAFAGTPTGKIILTLMILVNIICAV 298 >gi|302335344|ref|YP_003800551.1| Type II secretion system F domain protein [Olsenella uli DSM 7084] gi|301319184|gb|ADK67671.1| Type II secretion system F domain protein [Olsenella uli DSM 7084] Length = 213 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 53/132 (40%), Gaps = 1/132 (0%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMV 73 + P LD++ + AGL ++ + + SEF + + + + +++ + Sbjct: 71 ELPTMLDVVNLGLSAGLSFDASLELYCDNYETELSSEFGGALLSWRVGAVGRGDALLGLA 130 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + L + FST + + G L+E L S ++R+ + + + + + + + Sbjct: 131 ERLDLAALRTFSTSVVQALEFGSPLAEVLERQSEVIREEQRSQVEEEIEKVPVRMLIPLG 190 Query: 134 GSLPFCVSTLVY 145 + + + Sbjct: 191 TLIVPAMLVAIL 202 >gi|295395523|ref|ZP_06805717.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC 49030] gi|294971542|gb|EFG47423.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC 49030] Length = 277 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 64/169 (37%), Gaps = 5/169 (2%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77 +D V+ ++ G+ + A+ ++ + V R+V LG +++ + Sbjct: 106 VIDWAVQLLKVGIEPARAMTLVADLPDNEVVERVLRKVARAMELGEKPDQALRMYAGELG 165 Query: 78 LQEVSF---FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 ++ ++V V Q G +E LA+ + RDR + + ++ ++ Sbjct: 166 DEDARILTGMASVWFVSEQAGAPAAEMLASYASTCRDRADAMRERDVALAGPISTVMVLS 225 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 LP L + L+ G + + ++ G + MR M+ Sbjct: 226 WLPIMSLGLAVLVGADLVE-LVTSVPGALSICGGLVLLVAGRIWMRSML 273 >gi|289648896|ref|ZP_06480239.1| general secretion pathway protein F [Pseudomonas syringae pv. aesculi str. 2250] Length = 400 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + AG P+ ++ +++ Q ++ R+ E G LS ++ Sbjct: 62 AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEE 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 S + + GG L L LS L + ++ +V + ++ Sbjct: 122 GTQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + ++ L+ + P ++ + + G + + + +G + Sbjct: 174 VIGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGQFL 217 >gi|297564239|ref|YP_003683212.1| Type II secretion system F domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848688|gb|ADH70706.1| Type II secretion system F domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 236 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 56/159 (35%), Gaps = 6/159 (3%) Query: 2 KHLIKKRTAKF--LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 + R+ + D P + ++ +RAG V + + + + E V E Sbjct: 80 RRSAGSRSQRLPVTADLPVVIGLLASGIRAGATVPACLTAVSRATRGRLGEELAAVAEQL 139 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 LG + +E+ R PL V ++ + G +++ L + LR + Sbjct: 140 RLGAAPAEAWRRPALPEPLVPVGRD---LARAADTGAPVADLLDRHAVDLRRTLRARGTA 196 Query: 120 QALSMEAKASAWI-IGSLPFCVSTLVYFTSPGYMNVLIN 157 + + A + + LP V + + ++ + Sbjct: 197 RLERLGVLVVAPLGLCFLPAFVLIGIVPMAAELLSRALG 235 >gi|134294664|ref|YP_001118399.1| type II secretion system protein [Burkholderia vietnamiensis G4] gi|134137821|gb|ABO53564.1| type II secretion system protein [Burkholderia vietnamiensis G4] Length = 404 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/165 (10%), Positives = 44/165 (26%), Gaps = 6/165 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71 D + ++AGLP++ ++ ++ ++ D + + G L+ ++ R Sbjct: 64 TRDVTRFTRQLASLLQAGLPLAPSLEMLARTRTRDGMPRIAAGLAREIVGGQRLAVALGR 123 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + G L L ++ K + A Sbjct: 124 YPAQFG-----TLYRQLIEVGEASGALGTVLTRVAEHRERADAQWRKARVALTYPVAVIA 178 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 ++ + V T + +A + Sbjct: 179 FALAISAALMVWVVPTFRQIFDGFGAALPAPTRALLAVSSATSAW 223 Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 41/130 (31%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P++DA A + ++ G+ L++++ + Sbjct: 274 WCRSLATLLGAGVPLADAFATLERASGHPVFERATEQIAARVLRGVRLADAMHAAGCFPD 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ G L LA+++ + + + + A E + + Sbjct: 334 DVVQP------IAVAEETGALDTMLADIASLCERQLDARLDALAALGEPLIVIVLGALVG 387 Query: 138 FCVSTLVYFT 147 V + Sbjct: 388 ALVIAMYLPI 397 >gi|284045233|ref|YP_003395573.1| type II secretion system F domain protein [Conexibacter woesei DSM 14684] gi|283949454|gb|ADB52198.1| Type II secretion system F domain protein [Conexibacter woesei DSM 14684] Length = 281 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 66/185 (35%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++ + P I ++ AG V A+ + +E Sbjct: 95 LHQRRRRYRVELERAAPAVARAIADALGAGHAVPGALVEAARGAEGAAAAELGAAAAALR 154 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G + + R+ + I +Q + GG+L+ L L+ + + + Sbjct: 155 MGQPTAAVLERLRARADSRPYDTLVAAILLQREAGGDLATLLRELAAAQEESMRLLDDAR 214 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A + +A+ + ++G +P + L PG + ++ P L G A + ++ +R Sbjct: 215 ATTAQARFTGLVVGVMPIGAAALAELARPGALAMVAQVPLAAWLAGFAFFLQAVALVAIR 274 Query: 181 LMINF 185 + Sbjct: 275 RLARV 279 >gi|116671913|ref|YP_832846.1| hypothetical protein Arth_3371 [Arthrobacter sp. FB24] gi|116612022|gb|ABK04746.1| hypothetical protein Arth_3371 [Arthrobacter sp. FB24] Length = 276 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 23/189 (12%), Positives = 56/189 (29%), Gaps = 23/189 (12%) Query: 19 ALDIIVRSVRAGLPVSDAVAVI-----VGQSSDPVRSEFRRVIETQHLGLSLSESISRM- 72 + + ++ G S + V + S E + +S++ + + Sbjct: 82 VVQQLAALLKGGRTPSRLWDELWMVYSVEEPSGSGPREEPGLTAGSLSMVSVARAAALRG 141 Query: 73 -----------------VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + + + + + G L++ L L+ L + Sbjct: 142 SPVAEAIRAAAAAAFPGSQNRERRIWGELAACFDIAAASGCPLADVLTRLAAQLEAEDDA 201 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 +A Q KA+ ++ LP L +++L+ P G L + G Sbjct: 202 EAARQTALAGPKATVTLLTWLPLLGLGLGVALGVDPLSILLGTPFGMAALAAGVGLTVAG 261 Query: 176 IMVMRLMIN 184 + ++ Sbjct: 262 RIWSARLVR 270 >gi|329298069|ref|ZP_08255405.1| type IV pilin biogenesis protein [Plautia stali symbiont] Length = 165 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/151 (11%), Positives = 52/151 (34%), Gaps = 9/151 (5%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESISRMVRYMPL 78 + + ++AGLP+++++ ++ +++ + + S+++ P Sbjct: 1 MRQLATLLKAGLPLAESLTLLASGHPHAGWRVLLSLLQQRVMAGEPFSQALRAWPDIFPP 60 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + +L G L E L+ ++ ++ KV +I+ Sbjct: 61 R-----FPALMQVGELTGQLDECCRQLALQQSRQQFLRQKVVKTLRYPL---FILLVALA 112 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 + ++ F P ++ V + Sbjct: 113 VSAGMLLFVLPEFVAVYASFDAPLPAFTAGV 143 >gi|222447018|pdb|3C1Q|A Chain A, The Three-Dimensional Structure Of The Cytoplasmic Domains Of Epsf From The Type 2 Secretion System Of Vibrio Cholerae gi|222447019|pdb|3C1Q|B Chain B, The Three-Dimensional Structure Of The Cytoplasmic Domains Of Epsf From The Type 2 Secretion System Of Vibrio Cholerae Length = 123 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 6/110 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + V++G P+ + + + QS +R+ V G +LS+S+ Sbjct: 13 DLALITRQLATLVQSGXPLEECLRAVAEQSEKPRIRTXLVAVRAKVTEGYTLSDSLGDYP 72 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + G+L L L+ +R+ ++K+Q S Sbjct: 73 -----HVFDELFRSXVAAGEKSGHLDSVLERLADYAENRQKXRSKLQQAS 117 >gi|87120707|ref|ZP_01076600.1| general secretion pathway protein F [Marinomonas sp. MED121] gi|86163935|gb|EAQ65207.1| general secretion pathway protein F [Marinomonas sp. MED121] Length = 400 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 54/159 (33%), Gaps = 6/159 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AGLP+ +A+ Q + + +RS + G SL+E+++ + P Sbjct: 66 MTRQLATLIDAGLPIEEALTGGAQQATKNKIRSMLLSIRSKVMEGHSLAEALASYPKAFP 125 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+L L L+ +K K+Q M + + Sbjct: 126 I-----LFRASVEAGEQSGHLHAVLMQLADFTERQKQNAQKIQMAMMYPAILTLVAIGIV 180 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + V + + G ++ + ++ G Sbjct: 181 SFLLGSVMPDIVQVFDTQGAELPGITQFMLSLSNLITGY 219 >gi|297748700|gb|ADI51246.1| General secretion pathway protein F [Chlamydia trachomatis D-EC] gi|297749580|gb|ADI52258.1| General secretion pathway protein F [Chlamydia trachomatis D-LC] Length = 425 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 24/193 (12%), Positives = 59/193 (30%), Gaps = 15/193 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 ++ + ++ + +V +R+G+ + DA+ + Q + ++E Sbjct: 76 IRKVRERNYRVTTTELVIFTKQLVLLLRSGISLYDALTSLRDQYQGRALAGVLTSLMEAL 135 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SE+++R F + GNL AL N+ ++L +++ + + Sbjct: 136 RSGGVFSEALARFP-----HIFDSFYQNSVRSGESIGNLEGALMNIIKVLEEKEKLSKSL 190 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG---------VAAA 170 A ++ V T + + Sbjct: 191 AAALSYPVILLVFSCAVVVFFLIGVIPTLKETFEDMEMTRLTKAVFSCSTWFCRYKFLVL 250 Query: 171 FMLIGIMVMRLMI 183 IG + ++ Sbjct: 251 LGGIGGAISLRIV 263 >gi|256829538|ref|YP_003158266.1| type II secretion system protein [Desulfomicrobium baculatum DSM 4028] gi|256578714|gb|ACU89850.1| type II secretion system protein [Desulfomicrobium baculatum DSM 4028] Length = 401 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 21/161 (13%), Positives = 46/161 (28%), Gaps = 7/161 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + AG+P+ A+ ++ Q+ +P + G S Sbjct: 61 DRDMVVFSRQFATMINAGVPILQALQIMCEQTENPKLRRKLYAVRNDIEGGS----SLYE 116 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + GG L + L L+ + +KAK++ + + Sbjct: 117 ALKKHPDIFDALYSNMVNAGETGGILDQVLIRLAEYIEKAAKLKAKIKGAMIYPGVVVTV 176 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 ++ + V P + + L M Sbjct: 177 AVAVIAVILIFVI---PTFEQMFTESGGALPLPTQIVINMS 214 Score = 41.3 bits (95), Expect = 0.069, Method: Composition-based stats. Identities = 13/130 (10%), Positives = 38/130 (29%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + V +G+P+ +A+ ++ +S E + + + S + Sbjct: 270 FSRTLATMVSSGVPILNALDIVSR-TSGNKTVEKGVLEAKKSIAEGQSLAEP----LDDT 324 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L L ++ D ++ +E ++ + Sbjct: 325 GVFPPMVIHMIAIGETTGALDSMLTKIADFYDDEVDVAVDALTSLIEPIMIVFLGVVVGG 384 Query: 139 CVSTLVYFTS 148 V ++ Sbjct: 385 LVISMYLPIF 394 >gi|206561783|ref|YP_002232548.1| type IV pilus assembly protein PilC [Burkholderia cenocepacia J2315] gi|198037825|emb|CAR53769.1| type IV pilus assembly protein PilC [Burkholderia cenocepacia J2315] Length = 401 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/138 (11%), Positives = 44/138 (31%), Gaps = 6/138 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + ++AGLP++ ++ ++ ++ D V + G +++++R Sbjct: 67 FTRQLASLLQAGLPLAPSLEMLARTRTRDGVPRIAAGLAREIVGGRRFADALARYPSQFG 126 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+L L ++ K++A A ++ Sbjct: 127 -----TLYRQLIEVGEASGSLGIVLTRVAEHRERADAQWRKLRAALAYPAAVILFALAIS 181 Query: 138 FCVSTLVYFTSPGYMNVL 155 + V T + Sbjct: 182 AALMVWVVPTFRQIFDGF 199 Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 40/130 (30%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P++DA A + + + G+ L++++ + Sbjct: 271 WCRSLATLLGAGVPLADAFATLERTAGHPVFAHATAHIAARVLRGVRLADAMHSAGCFPD 330 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ G L L +++ + + + + A E + + Sbjct: 331 DVVQP------IAVAEETGALDSMLGDIAALCERQLDARLDALAALGEPLIVIVLGALVG 384 Query: 138 FCVSTLVYFT 147 V + Sbjct: 385 GLVIAMYLPI 394 >gi|302521144|ref|ZP_07273486.1| integral membrane protein [Streptomyces sp. SPB78] gi|318062248|ref|ZP_07980969.1| integral membrane protein [Streptomyces sp. SA3_actG] gi|318080604|ref|ZP_07987936.1| integral membrane protein [Streptomyces sp. SA3_actF] gi|302430039|gb|EFL01855.1| integral membrane protein [Streptomyces sp. SPB78] Length = 312 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 64/156 (41%), Gaps = 4/156 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + + LD++ S+ G + +A+ S R ++ Sbjct: 158 IRRDAQDKRRDLRRVIGAYLDLVAMSLAGGRGLPEALLAAAEVSDGWASRRIRDALQDAR 217 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + + ++ R+ + ++E+ S+ +++ + G + E+LA+ + +R R+ + + Sbjct: 218 ITGHTQWYALGRLGEELGIEELKELSSSLALVADDGAKVRESLASRAETMRHRELAEIE- 276 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 S K+ + +I L C LV+ P M V Sbjct: 277 --GSAGEKSQSMLIAQLLLCAGFLVFLIFPAAMRVF 310 >gi|308271306|emb|CBX27914.1| hypothetical protein N47_G32380 [uncultured Desulfobacterium sp.] Length = 411 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 28/188 (14%), Positives = 63/188 (33%), Gaps = 19/188 (10%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISR 71 +D N + +R+G+ + A +++ + E R+I G ++++ Sbjct: 72 DEDMYNIAREMSTLLRSGMRIDKAFDILIHATEKQDLREVLLRIIADIKAGKGVAQAFDN 131 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 R+ P + S+ G L EA N++R LR + +A+V+ + Sbjct: 132 TGRFGP------LVISMIHVSEAVGELREAFENIARYLRFQIQFRAEVRNAMSYPAFLVF 185 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLIN------------DPRGHMLLGVAAAFMLIGIMVM 179 G F + + + A +++G +V+ Sbjct: 186 ASGVTFFVIFQFIVPRFFSIFGPQGTRLPLPAKALYAISGWFNFTSIGIMAGLVVGFLVL 245 Query: 180 RLMINFDV 187 R + + Sbjct: 246 RRLNPVKI 253 >gi|303233432|ref|ZP_07320101.1| type II secretion system F domain protein [Atopobium vaginae PB189-T1-4] gi|302480561|gb|EFL43652.1| type II secretion system F domain protein [Atopobium vaginae PB189-T1-4] Length = 229 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 58/141 (41%), Gaps = 1/141 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-S 64 +KR L P LD+++ + AGL ++ + + F V+ + LG+ S Sbjct: 80 QKRRMVCLQQLPVLLDVVILGLSAGLSFDASLDLYCSHYQGALADAFSAVMLQERLGIVS 139 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 E++ ++ + M L +S F + + + G L LA + +RD + + + Q + Sbjct: 140 KREALLKLDQDMKLDALSRFISSVVQALECGSPLVHILAGQAEAIRDAQRSELEEQIEKV 199 Query: 125 EAKASAWIIGSLPFCVSTLVY 145 K + + + + Sbjct: 200 PVKMLIPMGTLIVPAMLISIV 220 >gi|237733725|ref|ZP_04564206.1| type II secretion system protein [Mollicutes bacterium D7] gi|229383323|gb|EEO33414.1| type II secretion system protein [Coprobacillus sp. D7] Length = 397 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 21/167 (12%), Positives = 60/167 (35%), Gaps = 13/167 (7%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + N I + +GLP+ V+++ + + +++ + + G +LS+++ Sbjct: 58 KELANFCREIGTMMNSGLPLIRTVSILASREDNKKLKAIYNDIYVKLQQGQTLSDALKEQ 117 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P + + GN+ + + L+ + +K KV++ + Sbjct: 118 GKAFP-----DILIQMVRSGEASGNMQDTMMVLNNQFTNDNKIKNKVKSAMTYPV---IL 169 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + P + ++ G L + ++I +M Sbjct: 170 GIVTIVVLLIVYTAVLPSFFSMF----EGMELPLITEINIIISKFIM 212 >gi|117918875|ref|YP_868067.1| type II secretion system protein [Shewanella sp. ANA-3] gi|117611207|gb|ABK46661.1| type II secretion system protein [Shewanella sp. ANA-3] Length = 423 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/172 (9%), Positives = 51/172 (29%), Gaps = 8/172 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMV 73 D I + AG+P+ + ++ E ++ G+ LS+S+ Sbjct: 83 DIAMITRQIATMLAAGVPLVTTIELLGRGHEKAKMRELLGSILSEIQSGIPLSDSLR--- 139 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + G+L ++ + +K+K++ A + Sbjct: 140 --PHRRYFDDLYVDLVAAGEHSGSLDVVFDRIATYREKSEALKSKIKKAMFYPAAVVVVA 197 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183 + + V + ++L ++ + + ++ Sbjct: 198 ILVTTLLLLFVVPQFEEIFKGFGAELPAFTQLVLHISRGLQSSWYIFLGAIV 249 >gi|66047622|ref|YP_237463.1| type II secretion system protein [Pseudomonas syringae pv. syringae B728a] gi|63258329|gb|AAY39425.1| type II secretion system protein [Pseudomonas syringae pv. syringae B728a] Length = 294 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 68/157 (43%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + + ++R + + + + ++ +G+ V A+ V+ + + E R V+ Sbjct: 134 LAAVARRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLM 193 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL L E + + + + E+S +++ GG ++L L +++ DR+ + Sbjct: 194 RVDSGLELGEELRKTAALLDVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 253 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + AK S ++ L + ++ PG+M + Sbjct: 254 QEYISKLSAKMSVVMMVFLFPALLIVL--AGPGFMAI 288 >gi|217076182|ref|YP_002333898.1| type II secretion system protein [Thermosipho africanus TCF52B] gi|217036035|gb|ACJ74557.1| type II secretion system protein [Thermosipho africanus TCF52B] Length = 398 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 27/186 (14%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQHLGLSLSESISR 71 D + V+AGL + +A+ ++ Q S RS ++ +G SLSE+ + Sbjct: 60 KDIVFFTRQLETMVKAGLRLREAIYILSNQEIFSKRFRSILVNIVSELDVGTSLSEAFKK 119 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + GG L E L L+ + +V++ + + Sbjct: 120 ------QKAFDDVFINMIKAGEEGGVLEETLEKLASYYENLNRTNQQVKSAMVYPT---F 170 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM----------------LLGVAAAFMLIG 175 I+G V + F P NV P G + ++ +L+G Sbjct: 171 ILGFAVIVVVVISVFILPKLFNVFGTIPTGGIISFLISVNKVVTGNPFMVAFVIISLLVG 230 Query: 176 IMVMRL 181 + + Sbjct: 231 MFLFLR 236 Score = 38.6 bits (88), Expect = 0.38, Method: Composition-based stats. Identities = 17/146 (11%), Positives = 46/146 (31%), Gaps = 9/146 (6%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLG 62 LI+K K + + +G+ + D++ + S++ + V E G Sbjct: 253 LIRKLQEKITYE--RFCRTFGVLIASGVSIIDSLEMAAKASNNLKFIMKIKNVSEKVKSG 310 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +L +++ + + + G L + ++ ++ K Sbjct: 311 STLKQALKS------EKVFPQIIYEMIGTGEETGKLDTIMEKVADFFDEQIQQDTKKLLS 364 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTS 148 +E A++ + F + Sbjct: 365 MLEPLMIAFVGLFIAFLAYAMYSTIF 390 >gi|219669573|ref|YP_002460008.1| type II secretion system protein [Desulfitobacterium hafniense DCB-2] gi|219539833|gb|ACL21572.1| type II secretion system protein [Desulfitobacterium hafniense DCB-2] Length = 401 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 26/202 (12%), Positives = 56/202 (27%), Gaps = 27/202 (13%) Query: 1 MKHLIKKRT--AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 + L+ KR + + VR+G + + V+ Q D E +I Sbjct: 47 LNALLNKRIMTKVKYESISAFCSQLAMMVRSGANLVRGLEVLKLQLEDKELQEVLEIIVR 106 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + + GNL L +++ ++ K Sbjct: 107 GVSRGD----SLSQAMRDCRGALPDLLINLVAVGEESGNLESVLTSMAEYYDRENYIRKK 162 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML-------------- 164 VQ+ S+ ++ L + + F P +L + L Sbjct: 163 VQSASIYPV---ILLTVLIGIIFFFMNFLLPEITGMLTESGQSLPLPTRMIINTADFFSN 219 Query: 165 ----LGVAAAFMLIGIMVMRLM 182 L ++ G+ + + Sbjct: 220 YGIYLLAGLIGLVFGLNWLFKI 241 >gi|308234328|ref|ZP_07665065.1| Type II secretion system F domain protein [Atopobium vaginae DSM 15829] Length = 144 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 54/133 (40%), Gaps = 1/133 (0%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRM 72 + P LD+I + +GL ++ + + + F+R + L +S ++ + Sbjct: 4 QELPTLLDVITLGLSSGLSFEASLDLYCMHYNGVLAQLFQRQLLQYRLGVISRRAALQDI 63 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + ++ F++ + + G L L++ ++ +RD + + + + + K + Sbjct: 64 ADDLHIDALTRFTSTVIQALECGSPLVGVLSDQAQSIRDAQRFELEEEIEKIPVKMLIPM 123 Query: 133 IGSLPFCVSTLVY 145 + + + Sbjct: 124 GVLIVPAMLISIM 136 >gi|295110973|emb|CBL27723.1| Type II secretory pathway, component PulF [Synergistetes bacterium SGP1] Length = 411 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 50/153 (32%), Gaps = 6/153 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + V+AGL +S A+ +I Q V V G+ +S+++ Sbjct: 78 FFRQMATMVQAGLTLSMAIDIIAEQERSMVFKDVLLDVKGRLDRGIPMSQAMRAHP---- 133 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + GG L +L ++ +L + +K+K+++ + ++ Sbjct: 134 -SVFNNMMISLVQAGEEGGLLDNSLERVAGLLEKQAALKSKIRSAMFYPSFVIFFAVAVV 192 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + + + + + Sbjct: 193 VVFIAFILPKFQQVFRGMNIELPALTEMLFSLG 225 >gi|333025169|ref|ZP_08453233.1| putative integral membrane protein [Streptomyces sp. Tu6071] gi|332745021|gb|EGJ75462.1| putative integral membrane protein [Streptomyces sp. Tu6071] Length = 294 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 64/156 (41%), Gaps = 4/156 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + + LD++ S+ G + +A+ S R ++ Sbjct: 140 IRRDAQDKRRDLRRVIGAYLDLVAMSLAGGRGLPEALLAAAEVSDGWASRRIRDALQDAR 199 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + + ++ R+ + ++E+ S+ +++ + G + E+LA+ + +R R+ + + Sbjct: 200 ITGHTQWYALGRLGEELGIEELKELSSSLALVADDGAKVRESLASRAETMRHRELAEIE- 258 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 S K+ + +I L C LV+ P M V Sbjct: 259 --GSAGEKSQSMLIAQLLLCAGFLVFLIFPAAMRVF 292 >gi|302387444|ref|YP_003823266.1| hypothetical protein Closa_3110 [Clostridium saccharolyticum WM1] gi|302198072|gb|ADL05643.1| conserved hypothetical protein [Clostridium saccharolyticum WM1] Length = 309 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 64/177 (36%), Gaps = 2/177 (1%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSE 67 + AL I+ + + AV + + PV F+ + L + E Sbjct: 128 KKDIAAELETALSIVTTAYLRSENILTAVEENLHYLNPPVHQVFKDFVLRVKLIDPDVLE 187 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +I + + + + + +L L + L D + + +++ L E + Sbjct: 188 AIKVLRTKIDNEVFREWCDALCDCQH-DRSLKVTLTPIVSKLSDMRIVNGELEYLVFEPR 246 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 I+ L+Y + + + L++ P G ++L ++AA + I + + Sbjct: 247 KEFIIMVIFVIGNIPLMYLLNKSWYDTLMHTPLGQIILAISAALIFISTACVIRLTK 303 >gi|150401575|ref|YP_001325341.1| type II secretion system protein [Methanococcus aeolicus Nankai-3] gi|150014278|gb|ABR56729.1| type II secretion system protein [Methanococcus aeolicus Nankai-3] Length = 295 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 76/209 (36%), Gaps = 34/209 (16%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLS 66 + KF + P AL ++ S+ +G V++A+ ++ + V EF +++ S Sbjct: 78 KIEKFEKNIPKALYVMTLSLDSGRSVTEAIEEVINAGVNGVDKEFMKILYLIIEKKYSFE 137 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++++ + +I + GG L+ L L++ L D N+K ++ + + Sbjct: 138 DAMTTITENSDSMVFRQIGRLIIENRKQGGELASTLRTLAKTLEDLMNIKQQLLSTTANG 197 Query: 127 KASAWIIGS--------LPFCVSTLVYFTSP---------------------GYMNVLIN 157 +I L T++ SP G +L + Sbjct: 198 LVVGLVILCGVIPATAGLIGGYLTVLSTMSPNMPAPSPEQIAKCYELIQLGTGIFGLLFS 257 Query: 158 DPRGHM----LLGVAAAFMLIGIMVMRLM 182 P + ++ A M GI+V + Sbjct: 258 IPLFGLNLSRMIITCAICMTGGIVVFYGI 286 >gi|307353959|ref|YP_003895010.1| type II secretion system F domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307157192|gb|ADN36572.1| Type II secretion system F domain protein [Methanoplanus petrolearius DSM 11571] Length = 307 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 54/178 (30%), Gaps = 3/178 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLG 62 L R P A++ I AG+ ++ ++ + E R + + Sbjct: 122 LAGDRRRNIDSTLPYAINYITAMSTAGITPAEVFRLLGNSEIYGESAVEARYITREIDVF 181 Query: 63 L-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 L +++ +Y P + F G NL+E N S K Sbjct: 182 GKDLLDALRLAGQYTPSDRMRDFLQGAIASISSGSNLTEYFRNKSEQYMKENRQTQKTFL 241 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ + +++ L L+ S + P ++ + + V+ Sbjct: 242 ETLGLISESYVTA-LVAGTLFLIILQSIMSTISSTSSPMFLYVVIYGIIPLGSIMFVI 298 >gi|186896485|ref|YP_001873597.1| type II secretion system protein [Yersinia pseudotuberculosis PB1/+] gi|186699511|gb|ACC90140.1| type II secretion system protein [Yersinia pseudotuberculosis PB1/+] Length = 400 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 56/183 (30%), Gaps = 19/183 (10%) Query: 5 IKKRTAKFLD----------DFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFR 53 IKKR F D I V A +P+ + + ++ Q S + + Sbjct: 42 IKKRILLFNKYVVKKNSNKTDLVLITRQIATLVNASMPLDEVLDIVGKQNSKSKMIEIIQ 101 Query: 54 RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 R+ G S ++++S S + ++ G+L L L+ + + Sbjct: 102 RIRVNIQEGHSFADALSPFPA-----VFSPLYKTMVTAGEVSGHLGLVLVRLADHIEQTQ 156 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 ++ K+ + ++ + L+ P + L + Sbjct: 157 KIQRKIIQALIYP---CVLVLISLSVIIILLTAVVPNIVEQFSFSETALPLSTKVLMILS 213 Query: 174 IGI 176 I Sbjct: 214 YSI 216 >gi|167721321|ref|ZP_02404557.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei DM98] Length = 345 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/153 (11%), Positives = 41/153 (26%), Gaps = 6/153 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AGL ++ ++ ++ + + + G S ++ R R Sbjct: 11 FARQLAGLLHAGLALAPSLELLAQATQRSEMPRVAAGLAREIVAGRQFSAALRRYPRQFD 70 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 F + + G L+ L L+ A+V+ ++ Sbjct: 71 P-----FFCQLVAVGETAGALAAVLTRLADDRERAAAQYARVKGALAYPATVLLFALAIT 125 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + V T +A + Sbjct: 126 AALLVWVVPTFEQIFAGFGAPLPAPTRFVLALS 158 >gi|153956470|ref|YP_001397235.1| hypothetical protein CKL_3887 [Clostridium kluyveri DSM 555] gi|146349328|gb|EDK35864.1| Hypothetical protein CKL_3887 [Clostridium kluyveri DSM 555] Length = 309 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 64/177 (36%), Gaps = 2/177 (1%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSE 67 + AL I+ + + AV + + PV F+ + L + E Sbjct: 128 KKDIAAELETALSIVTTAYLRSENILTAVEENLHYLNPPVHQVFKDFVLRVKLIDPDVLE 187 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +I + + + + + +L L + L D + + +++ L E + Sbjct: 188 AIKVLRTKIDNEVFREWCDALCDCQH-DRSLKVTLTPIVSKLSDMRIVNGELEYLVFEPR 246 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 I+ L+Y + + + L++ P G ++L ++AA + + + + Sbjct: 247 KEFIIMVIFVIGNIPLMYLLNKSWYDTLMHTPLGQIILAISAALIFVSTACVLKLTK 303 >gi|330011970|ref|ZP_08307208.1| bacterial type II secretion system protein F domain protein [Klebsiella sp. MS 92-3] gi|328534038|gb|EGF60689.1| bacterial type II secretion system protein F domain protein [Klebsiella sp. MS 92-3] Length = 236 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 46/156 (29%), Gaps = 4/156 (2%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + ++AGLP+++ ++++ Q S + + Sbjct: 62 ETIRQLATLLQAGLPLAEGLSLLAQQQSHAQWQALLEALGRELAQG----VAFSAALAQW 117 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 Q + +L G L L+ ++++ + +KV+ + + Sbjct: 118 PQAFPPLYLAMISTGELTGKLDICCLQLANQQQEQQRLASKVKKALRYPLIVLSLALLVV 177 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + V + VAA ML Sbjct: 178 LGMLYFVLPEFTAIYQTFSTPLPLMTRMVVAAGDML 213 >gi|262375108|ref|ZP_06068342.1| general secretion pathway protein F [Acinetobacter lwoffii SH145] gi|262310121|gb|EEY91250.1| general secretion pathway protein F [Acinetobacter lwoffii SH145] Length = 401 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 56/174 (32%), Gaps = 15/174 (8%) Query: 2 KHLIKKRTAKFLD-----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRV 55 K + R F D + V A +P+ +A+ + QS V++ V Sbjct: 47 KKDQQHRRKWFEKSITAYDLALMTRQLSVLVAAAIPLEEAIRAVGKQSEKVHVQNLLMSV 106 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 G SL++ + + R + G+L L L+ +R M Sbjct: 107 RSKVLEGHSLAQGLQQSGR------FPELYIATIAAGERSGHLDLILDQLADYTENRFAM 160 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 + K+Q + + ++ V L+ + P + + VA Sbjct: 161 QKKIQGAMVYPIILMLMSFAI---VMGLMTYVVPDIVKTFDQSKDALPWITVAL 211 >gi|256824884|ref|YP_003148844.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547] gi|256688277|gb|ACV06079.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547] Length = 309 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 21/154 (13%), Positives = 56/154 (36%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + +R + +++FP +++ +V AG + A+ + S + E + + Sbjct: 154 LARRVAQRERRVVEEFPAVAELLALAVAAGESATAALERVARLSRGELSRELTQALGEAR 213 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL ++ + + V+ F + + + G L++ L + R+ + Sbjct: 214 TGASLPTALEGIAERTEVPSVARFVDGVIIAVERGTPLADVLRAQATDAREAARQHVIAE 273 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 E ++ + + G + V Sbjct: 274 GGRREILMMIPVVFFVLPVTVVFAMYPGLGALQV 307 >gi|225375664|ref|ZP_03752885.1| hypothetical protein ROSEINA2194_01289 [Roseburia inulinivorans DSM 16841] gi|225212521|gb|EEG94875.1| hypothetical protein ROSEINA2194_01289 [Roseburia inulinivorans DSM 16841] Length = 203 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 64/185 (34%), Gaps = 2/185 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + AL II + + +V + + PV++ F + Sbjct: 14 IRLTASHFKKDVSSELETALSIITTAYLRSEDILTSVEENLEYLNPPVKTVFADFVSRIR 73 Query: 61 L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 L L ++ + + + + +L L + L D + + A++ Sbjct: 74 LIDPDLEAALEELKGKIENDVFMEWVDALKSCL-YDRSLKTTLTPIVAKLSDMRIVNAEL 132 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + L E + + L L+YF + + + L++ G ++L V A + + + Sbjct: 133 EYLVFEPRKEFITMVVLAVGNIPLLYFLNQSWYDTLMHTIPGQIMLAVTGAIIFVSTACV 192 Query: 180 RLMIN 184 + Sbjct: 193 IKLTK 197 >gi|4680723|gb|AAC23600.2| type IV pilin biogenesis protein [Vibrio vulnificus] Length = 409 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/129 (11%), Positives = 42/129 (32%), Gaps = 6/129 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D + + G+P+ ++ ++ ++S V + G LS+++ Sbjct: 68 KDITLLTRQLATMLTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTPLSKALRSA 127 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + GNL + L+ + ++AKV + + Sbjct: 128 S-----PQFDGIYVDLVATGEQSGNLDQVFERLAFYREKNEQLRAKVIKALIYPCMVVLV 182 Query: 133 IGSLPFCVS 141 + + + Sbjct: 183 ALGVSYLML 191 Score = 36.3 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 11/136 (8%), Positives = 37/136 (27%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + S AG+P+ ++ + + + V G+ + ++ Sbjct: 273 AAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAAGMPMYIAMRN- 331 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G + + L ++ I + +E ++ Sbjct: 332 -----SLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFL 386 Query: 133 IGSLPFCVSTLVYFTS 148 + V+ + Sbjct: 387 GVVVGGLVTAMYLPIF 402 >gi|330976793|gb|EGH76829.1| type II secretion system protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 294 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 68/157 (43%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + + ++R + + + + ++ +G+ V A+ V+ + + E R V+ Sbjct: 134 LATVARRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLM 193 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL L E + + + + E+S +++ GG ++L L +++ DR+ + Sbjct: 194 RVDSGLELGEELRKTAALLDVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 253 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + AK S ++ L + ++ PG+M + Sbjct: 254 QEYISKLSAKMSVVMMVFLFPALLIVL--AGPGFMAI 288 >gi|261338902|ref|ZP_05966760.1| hypothetical protein ENTCAN_05099 [Enterobacter cancerogenus ATCC 35316] gi|288318726|gb|EFC57664.1| protein transport protein HofC [Enterobacter cancerogenus ATCC 35316] Length = 398 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 65/197 (32%), Gaps = 22/197 (11%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 +K ++ + + + ++AGL +S ++A++ Q R+ + + + Sbjct: 45 LKRRRLRQRWQIDHCYAIF-QQLATLLQAGLTLSHSLAMLAQQHPLPQWRALLQAIADDL 103 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + SE++ + P + +L G L L++ + ++ ++AKV Sbjct: 104 SEGCAFSEALKQWPEVFPP-----LYVAMVKTGELTGKLETCCRQLAQQQKSQQLLRAKV 158 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH---------------ML 164 + ++ + TLV + ++ Sbjct: 159 MKALRYPIIILTLAAAVVLAMVTLVLPEFAAIYSTFNTPLPWLTQSVMRLSAFIQHHAVV 218 Query: 165 LGVAAAFMLIGIMVMRL 181 L V IG +R Sbjct: 219 LIVLFITPFIGAYGLRR 235 >gi|284989191|ref|YP_003407745.1| hypothetical protein Gobs_0593 [Geodermatophilus obscurus DSM 43160] gi|284062436|gb|ADB73374.1| conserved hypothetical protein [Geodermatophilus obscurus DSM 43160] Length = 264 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 63/172 (36%), Gaps = 6/172 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRM 72 AL + +R+G + +A V +D R + + G ++ + Sbjct: 94 AALVEALTGLGAELRSGRSLDEATRAAVAACADDDSGRALARAVRSPGDGAGEADDGGEL 153 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R + + + ++ G +L+ + + LR R + ++++ + ++ASA + Sbjct: 154 GRALG-----RVAAAARLSARTGCSLAAVVGAVEDDLRARSRHRLELRSATAGSRASAAL 208 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + LP + VL G +LL + G++ ++ Sbjct: 209 LAGLPVLGLVMGGGVGADPWRVLTTTGTGQLLLVAGVGLEVAGLVWSARLVR 260 >gi|261409010|ref|YP_003245251.1| Type II secretion system F domain-containing protein [Paenibacillus sp. Y412MC10] gi|261285473|gb|ACX67444.1| Type II secretion system F domain protein [Paenibacillus sp. Y412MC10] Length = 290 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 73/158 (46%), Gaps = 7/158 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 + + R + + P L+ IV V AG V A+ V ++ D P+ +E +R++ Sbjct: 134 LHKKVTLREQDIVMELPELLNKIVLLVGAGETVQRAIIHCVERNEDASHPLYAELKRMVL 193 Query: 58 TQHLGLSLSESISRMVRYMPLQEVS-FFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 G ++ + + +QEVS F +TV+ + G + AL +LSR+L +++ Sbjct: 194 EWEGGHPFQQAFEQFNKRCGVQEVSIFTTTVLLNFRRGGNDFVLALRDLSRVLWEKRKAI 253 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 A+ + +K ++ + + +V +P +M + Sbjct: 254 ARTRGEQASSKL---VLPMVVIFMIVIVLLGAPAFMMM 288 >gi|289525615|emb|CBJ15093.1| general secretion pathway protein F [Chlamydia trachomatis Sweden2] gi|296435176|gb|ADH17354.1| general secretion pathway protein F [Chlamydia trachomatis E/150] gi|296438896|gb|ADH21049.1| general secretion pathway protein F [Chlamydia trachomatis E/11023] Length = 391 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 22/193 (11%), Positives = 57/193 (29%), Gaps = 15/193 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 ++ + ++ + + +R+G+ + DA+ + Q + ++E Sbjct: 42 IRKVRERNYRVTTTELVIFTKQLALLLRSGISLYDALTSLRDQYQGRALAGVLTSLMEAL 101 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SE+++R F + GNL AL N+ ++L +++ + + Sbjct: 102 RSGGVFSEALARFP-----HIFDSFYQNSVRSGESIGNLEGALMNIIKVLEEKEKLSKSL 156 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG---------VAAA 170 A ++ V + + Sbjct: 157 AAALSYPAILLVFSCAVVVFFLIGVIPILKETFEDMEMTRLTKAVFSCSTWFCRYKFLVL 216 Query: 171 FMLIGIMVMRLMI 183 IG + ++ Sbjct: 217 LGGIGGAISLRIV 229 >gi|226939982|ref|YP_002795055.1| type II secretion system protein [Laribacter hongkongensis HLHK9] gi|226714908|gb|ACO74046.1| Bacterial type II secretion system protein [Laribacter hongkongensis HLHK9] Length = 401 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 21/186 (11%), Positives = 66/186 (35%), Gaps = 12/186 (6%) Query: 1 MKHLIKK---RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57 + L +K R + + + +++RAG+P+ + +A + +S P+ E ++ Sbjct: 49 LDWLRRKTLPRQERI-----HFCFYLDQTLRAGVPLLEGLADLRDSASSPLFREILAMLV 103 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + + G L + LA L+ L+ + + A Sbjct: 104 LDIEGGKR----LSEALAEHPSVFDSVFVNLVATGETTGALPDVLARLADQLKWQDELIA 159 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + + + ++ + + T + ++ + + + +A + + + Sbjct: 160 QTRKILLYPAFVGTMLLLVIIFLMTYLVPQLVDFIRDIQKELPLQTRILLAVSDVFVHFG 219 Query: 178 VMRLMI 183 + ++ Sbjct: 220 WLMPLV 225 >gi|167033520|ref|YP_001668751.1| type II secretion system protein [Pseudomonas putida GB-1] gi|166860008|gb|ABY98415.1| type II secretion system protein [Pseudomonas putida GB-1] Length = 396 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 66/179 (36%), Gaps = 13/179 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 ++ + +R A F D + + AGLP+ DA+ + ++ R ++ Sbjct: 47 LRGMAWRREAAF--DLVLFSQELSTLLNAGLPLIDALESLAEKAPSPATRKVLAELVRQL 104 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + G SLS+++ + R P + S+ G L +ALA + ++ K+ Sbjct: 105 YEGRSLSQALGQQPRVFPP-----LYVALVQSSERTGALGDALARYISYRQRLDLVRQKL 159 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 S+ + G + + V + G L ++ M IG+ + Sbjct: 160 VGASVYPLLLLLVGGGVVLFLLGYVVPRFSQVFEGM-----GTELPWLSRVLMQIGLFL 213 >gi|15669474|ref|NP_248284.1| hypothetical protein MJ_1286 [Methanocaldococcus jannaschii DSM 2661] gi|3025058|sp|Q58682|Y1286_METJA RecName: Full=Uncharacterized protein MJ1286 gi|1591923|gb|AAB99288.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM 2661] Length = 595 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 67/183 (36%), Gaps = 9/183 (4%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 + +P L+ + +VR+G+ + A+ V + P+ +++ G ++E Sbjct: 390 NQKERYYPIFLNDLTMAVRSGMDIIRAMQVCARTNYGPLTKIVKKMAIQMSWGRPVNEVF 449 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + + R ++++ + GG++ + L +++ MK ++ A Sbjct: 450 ADLERTEKSLIAKRIASILKECAVSGGDVKDILTSVTVHAYKLSEMKREISARQFIYVVV 509 Query: 130 AWIIGSLPFCV-STLVYFTSPGYMN-------VLINDPRGHMLLGVAAAF-MLIGIMVMR 180 ++ L +V+ P + + +L + +GI+ R Sbjct: 510 IYLSFFLYIGTSYIMVHSLLPTLLKNIHGLSVEFYKNYLFQGILIYSIFSGASLGILTER 569 Query: 181 LMI 183 +I Sbjct: 570 SII 572 >gi|227494922|ref|ZP_03925238.1| type II secretion system protein [Actinomyces coleocanis DSM 15436] gi|226831374|gb|EEH63757.1| type II secretion system protein [Actinomyces coleocanis DSM 15436] Length = 293 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 61/158 (38%), Gaps = 10/158 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + + + K +A +++ + AG V A+ + S + S+ + Sbjct: 140 LTYRVNTFSKKLNSQVADAAELLALVISAGESVPGALNRVAKVSGPQMASQLESALTQIA 199 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++S+++ + P ++ + + G +LSE L + ++ LR+ + Sbjct: 200 QGTAVSKALKTLANKTPSVQLQRLLNTLVSGMERGSSLSEILRHQAKDLRE------ESL 253 Query: 121 ALSMEAKASAWIIGSLPFCVSTL----VYFTSPGYMNV 154 +E+ I +P L ++ PG + + Sbjct: 254 RNLLESGGRKEIAMLIPVVFLILPVTVIFALYPGLIAL 291 >gi|310658165|ref|YP_003935886.1| type II secretion system protein [Clostridium sticklandii DSM 519] gi|308824943|emb|CBH20981.1| putative Type II secretion system protein [Clostridium sticklandii] Length = 348 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 21/171 (12%), Positives = 56/171 (32%), Gaps = 7/171 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D + ++G+P+ D + + DP E + + L++ S Sbjct: 11 DLSLFCYQLSLIFKSGIPILDGMEIFAKDMMDPRLKEVAQ-----DMQQQLAQGYSLHSV 65 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + ++ GNL + L LS + K+++ ++ Sbjct: 66 IEKYKFFPVYLASMVKIAEQTGNLQDELERLSDYYEQTDRLNNKIKSAVTYPLILLVLMA 125 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMI 183 + + V + L D +++ +A + ++ ++I Sbjct: 126 GVILFLVLKVLPMFHEILLSLGGDIPVSTKIMIDLANILKTYALAIIGVLI 176 >gi|317057045|ref|YP_004105512.1| type II secretion system F domain [Ruminococcus albus 7] gi|315449314|gb|ADU22878.1| Type II secretion system F domain [Ruminococcus albus 7] Length = 398 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 18/141 (12%), Positives = 48/141 (34%), Gaps = 6/141 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISR 71 + + + +GL + A+ ++ + + E +++V E G S S ++ Sbjct: 58 TAELAYCCRQLSAMMSSGLTIVKALDILYKEEENKGAKEVWKQVYEEVQKGESFSGALDA 117 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P F + ++ G+L + L + + KV+ + Sbjct: 118 KRGCFP-----DFFISMVDAGEISGSLDITMKRLQEYYANTNKLNNKVKGAMIYPCVLLV 172 Query: 132 IIGSLPFCVSTLVYFTSPGYM 152 ++ ++ +S + M Sbjct: 173 LVIAVVILMSVKILPIFRSMM 193 >gi|162420196|ref|YP_001607615.1| general secretion pathway protein F [Yersinia pestis Angola] gi|162353011|gb|ABX86959.1| general secretion pathway protein F [Yersinia pestis Angola] Length = 400 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 56/183 (30%), Gaps = 19/183 (10%) Query: 5 IKKRTAKFLD----------DFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFR 53 IKKR F D I V A +P+ + + ++ Q S + + Sbjct: 42 IKKRILLFNKYVVKKNSNKTDLVLITRQIATLVNASMPLDEVLDIVGKQNSKSKMIEIIQ 101 Query: 54 RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 R+ G S ++++S S + ++ G+L L L+ + + Sbjct: 102 RIRVNIQEGHSFADALSPFPA-----VFSPLYKTMVTAGEVSGHLGLVLVRLADHIEQTQ 156 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 ++ K+ + ++ + L+ P + L + Sbjct: 157 KIQRKIIQALIYP---CVLVLISLSVIIILLTAVVPNIVEQFSFSETALPLSTKVLMILS 213 Query: 174 IGI 176 I Sbjct: 214 YSI 216 >gi|297571776|ref|YP_003697550.1| type II secretion system protein F [Arcanobacterium haemolyticum DSM 20595] gi|296932123|gb|ADH92931.1| Type II secretion system F domain protein [Arcanobacterium haemolyticum DSM 20595] Length = 291 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 58/155 (37%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + + P+ +++I +V AG PV A+ V S P+ R + H Sbjct: 137 LTTAARATSRILTAQLPDVIELIALAVSAGEPVRPAIERAVRSGSGPLIEHLRTTLAHVH 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL ++S + Q VS F+ + + GG L++ L N +R RD + Sbjct: 197 AGKSLPAALSDLSVRAGNQNVSRFTDSLITAMEQGGGLAQTLHNQARDARDAARRDLLEE 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 E ++ + F + + + Sbjct: 257 GGKAEISMMIPVVFLILPITVIFTIFPALSQLTFM 291 >gi|298527741|ref|ZP_07015145.1| Type II secretion system F domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511393|gb|EFI35295.1| Type II secretion system F domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 419 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/167 (8%), Positives = 51/167 (30%), Gaps = 6/167 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 D + + ++AG+ ++ ++A++ + + + + V G L +++ Sbjct: 79 TKDLTAFTEHLGAMLKAGITMNKSLALLGDLTENRSLARVIKDVHSRIREGSHLYQALEE 138 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P + + GG L L LS + + ++ + + + Sbjct: 139 HPEVFP-----EVFINMVRAGESGGILDVILERLSEFMNEMARLREHLVSSMIYPAILGL 193 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + +V + + + + ++ Sbjct: 194 TAAASMLVMLVVVIPRFADIFVDMGIEMPQATRVMLWCGNFIVHYWW 240 Score = 34.3 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 11/137 (8%), Positives = 36/137 (26%), Gaps = 5/137 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 + + + +G+ + +A+ ++ G + V V+ L + Sbjct: 281 LKLELARFSRTLGTLLNSGVSILEAMNIVSGVVGNTVLKNRLAVVYD-----DLKQGRML 335 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + G ++ L + + K E Sbjct: 336 SGSLEQHGIFPPLAVNMLRVGEESGEMAVMLEKVGDMYDRDLRRAVKSFTSIFEPAVILV 395 Query: 132 IIGSLPFCVSTLVYFTS 148 + + V +++ Sbjct: 396 MGLVIGVMVVSMLMAVF 412 >gi|88798778|ref|ZP_01114361.1| general secretion pathway protein F [Reinekea sp. MED297] gi|88778541|gb|EAR09733.1| general secretion pathway protein F [Reinekea sp. MED297] Length = 404 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 20/170 (11%), Positives = 53/170 (31%), Gaps = 4/170 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D + V +G+P+ + + QS R + L Sbjct: 65 ADLALLTRQLSTLVGSGMPLEECLKAAAEQSE----KARVRGLLLSVRSKVLEGFSLASA 120 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G+L + L L+ + D++ ++ ++Q S+ ++ Sbjct: 121 LKEYPRAFPVLYQATVNAGEHSGHLDQVLDRLADYMEDQQQIRNQIQIASIYPSILIFVA 180 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + V G + + G +A++ + + L++ Sbjct: 181 IGIIVFLLKSVVPQIVGAITATGGELPGPTRWLLASSGWIETYWLHSLIV 230 Score = 35.9 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 19/160 (11%), Positives = 41/160 (25%), Gaps = 19/160 (11%) Query: 2 KHLIKKRTA------------KFLDDF--PNALDIIVRSVRAGLPVSDAVAVIVGQSSDP 47 ++R + F + + AG+P+ +A+ + S+ Sbjct: 242 NRRKERRIRTHRLFLRLPLIGRISRGFNTSRFIGTVAMLSSAGVPLVEAMKIASQVVSNL 301 Query: 48 VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR 107 +S+SE S + + G L + L+ + Sbjct: 302 EIQ-----ARVNRAAISVSEGGSLHKALSEAGYFRPMMLHMIGSGEASGELDKMLSKTAD 356 Query: 108 ILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 + ME + G + V +V Sbjct: 357 AEDRQVKDLISTILGLMEPLMLIVMGGIVLIIVLAIVLPM 396 >gi|289675689|ref|ZP_06496579.1| type II secretion system protein [Pseudomonas syringae pv. syringae FF5] Length = 96 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 51/94 (54%) Query: 91 QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150 + GGN SE + NL +++RDR+ +++A++ E + +A ++ LP ++ +P Sbjct: 1 NHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETRMTAVVLALLPISMAGYFLAVNPN 60 Query: 151 YMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 Y+ + +D G ++L A A G +V+ M+ Sbjct: 61 YLLHMWDDESGKIMLSAAFALQATGCVVLWRMLR 94 >gi|121599735|ref|YP_991803.1| type IV pilus biogenesis protein PilC [Burkholderia mallei SAVP1] gi|124384858|ref|YP_001027295.1| type IV pilus biogenesis protein PilC [Burkholderia mallei NCTC 10229] gi|126449792|ref|YP_001082767.1| type IV pilus biogenesis protein PilC [Burkholderia mallei NCTC 10247] gi|217425697|ref|ZP_03457187.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei 576] gi|238561275|ref|ZP_00442358.2| type IV pilus biogenesis protein PilC [Burkholderia mallei GB8 horse 4] gi|251766627|ref|ZP_02264476.2| type IV pilus biogenesis protein PilC [Burkholderia mallei PRL-20] gi|254178757|ref|ZP_04885411.1| type IV pilus biogenesis protein PilC [Burkholderia mallei ATCC 10399] gi|254202797|ref|ZP_04909160.1| type IV pilus biogenesis protein PilC [Burkholderia mallei FMH] gi|254208139|ref|ZP_04914489.1| type IV pilus biogenesis protein PilC [Burkholderia mallei JHU] gi|254357657|ref|ZP_04973931.1| type IV pilus biogenesis protein PilC [Burkholderia mallei 2002721280] gi|121228545|gb|ABM51063.1| type IV pilus biogenesis protein PilC [Burkholderia mallei SAVP1] gi|124292878|gb|ABN02147.1| type IV pilus biogenesis protein PilC [Burkholderia mallei NCTC 10229] gi|126242662|gb|ABO05755.1| type IV pilus biogenesis protein PilC [Burkholderia mallei NCTC 10247] gi|147747044|gb|EDK54121.1| type IV pilus biogenesis protein PilC [Burkholderia mallei FMH] gi|147752033|gb|EDK59100.1| type IV pilus biogenesis protein PilC [Burkholderia mallei JHU] gi|148026721|gb|EDK84806.1| type IV pilus biogenesis protein PilC [Burkholderia mallei 2002721280] gi|160694671|gb|EDP84679.1| type IV pilus biogenesis protein PilC [Burkholderia mallei ATCC 10399] gi|217391285|gb|EEC31317.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei 576] gi|238524989|gb|EEP88419.1| type IV pilus biogenesis protein PilC [Burkholderia mallei GB8 horse 4] gi|243065299|gb|EES47485.1| type IV pilus biogenesis protein PilC [Burkholderia mallei PRL-20] Length = 405 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/153 (11%), Positives = 41/153 (26%), Gaps = 6/153 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AGL ++ ++ ++ + + + G S ++ R R Sbjct: 71 FARQLAGLLHAGLALAPSLELLAQATQRSEMPRVAAGLAREIVAGRQFSAALRRYPRQFD 130 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 F + + G L+ L L+ A+V+ ++ Sbjct: 131 P-----FFCQLVAVGETAGALAAVLTRLADDRERAAAQYARVKGALAYPATVLLFALAIT 185 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + V T +A + Sbjct: 186 AALLVWVVPTFEQIFAGFGAPLPAPTRFVLALS 218 >gi|229588191|ref|YP_002870310.1| hypothetical protein PFLU0643 [Pseudomonas fluorescens SBW25] gi|229360057|emb|CAY46911.1| putative membrane protein [Pseudomonas fluorescens SBW25] Length = 298 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 60/147 (40%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + K R + + ++ +G+ V ++ V+ ++ + E R ++ Sbjct: 137 LAAAAKHRQQAIAKEISTFIPLLRILFESGMAVEQSLRVLGNEAQRLLPHLTHELRLILA 196 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL L E + + V + + E + ++ Q GG ++L L ++L DR+ + Sbjct: 197 RVDSGLELGEELGKTVHVLEVDEFTDTCIILQQLIQQGGGAMKSLLALKQLLDDRRLTRL 256 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + M AK S ++ L + ++ Sbjct: 257 QEYISKMSAKMSVVMMVFLFPALLIVL 283 >gi|226199615|ref|ZP_03795171.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei Pakistan 9] gi|237813901|ref|YP_002898352.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei MSHR346] gi|225928361|gb|EEH24392.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei Pakistan 9] gi|237503240|gb|ACQ95558.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei MSHR346] Length = 405 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/153 (11%), Positives = 41/153 (26%), Gaps = 6/153 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AGL ++ ++ ++ + + + G S ++ R R Sbjct: 71 FARQLAGLLHAGLALAPSLELLAQATQRSEMPRVAAGLAREIVAGRQFSAALRRYPRQFD 130 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 F + + G L+ L L+ A+V+ ++ Sbjct: 131 P-----FFCQLVAVGETAGALAAVLTRLADDRERAAAQYARVKGALAYPATVLLFALAIT 185 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + V T +A + Sbjct: 186 AALLVWVVPTFEQIFAGFGAPLPAPTRFVLALS 218 >gi|167755497|ref|ZP_02427624.1| hypothetical protein CLORAM_01011 [Clostridium ramosum DSM 1402] gi|167704436|gb|EDS19015.1| hypothetical protein CLORAM_01011 [Clostridium ramosum DSM 1402] Length = 397 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 21/167 (12%), Positives = 60/167 (35%), Gaps = 13/167 (7%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + N I + +GLP+ V+++ + + +++ + + G +LS+++ Sbjct: 58 KELANFCREIGTMMNSGLPLIRTVSILASREDNKKLKAIYNDIYVKLQQGQTLSDALKEQ 117 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P + + GN+ + + L+ + +K KV++ + Sbjct: 118 GKAFP-----DILIQMVRSGEASGNMQDTMMVLNNQFTNDNKIKNKVKSAMTYPV---IL 169 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + P + ++ G L + ++I +M Sbjct: 170 GIVTIVVLLIVYTAVLPSFFSMF----EGMELPLITEINIIISKFIM 212 >gi|255507168|ref|ZP_05382807.1| general secretion pathway protein F [Chlamydia trachomatis D(s)2923] Length = 391 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/193 (11%), Positives = 58/193 (30%), Gaps = 15/193 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 ++ + ++ + + +R+G+ + DA+ + Q + ++E Sbjct: 42 IRKVRERNYRVTTTELVIFTKQLALLLRSGISLYDALTSLRDQYQGRALAGVLTSLMEAL 101 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SE+++R F + GNL AL N+ ++L +++ + + Sbjct: 102 RSGGVFSEALARFP-----HIFDSFYQNSVRSGESIGNLEGALMNIIKVLEEKEKLSKSL 156 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG---------VAAA 170 A ++ V T + + Sbjct: 157 AAALSYPAILLVFSCAVVVFFLIGVIPTLKETFEDMEMTRLTKAVFSCSTWFCRYKFLVL 216 Query: 171 FMLIGIMVMRLMI 183 IG + ++ Sbjct: 217 LGGIGGAISLRIV 229 >gi|46200147|ref|YP_005814.1| general secretion pathway protein F [Thermus thermophilus HB27] gi|46197775|gb|AAS82187.1| general secretion pathway protein F [Thermus thermophilus HB27] Length = 396 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 22/159 (13%), Positives = 52/159 (32%), Gaps = 4/159 (2%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + ++ V AG+PV+ A+ + +S +P+ E R + + G Sbjct: 57 ELVLFMEEFATLVGAGVPVAQALHTLSLESRNPLLKEAARGVRERVEGGE----ALAQAM 112 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + +++GG L L + L +++ KV+ + ++ Sbjct: 113 EHYPEVFPPLVRALVAAAEVGGALEVVLRRTAEYLDKSHDLREKVRTALLYPSFVVAVLV 172 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + + V + + A+F L Sbjct: 173 LVVAVLLLFVIPVFSRLYGAAGAELPWPTRFLIGASFFL 211 >gi|57242547|ref|ZP_00370485.1| general secretory pathway protein F [Campylobacter upsaliensis RM3195] gi|57016832|gb|EAL53615.1| general secretory pathway protein F [Campylobacter upsaliensis RM3195] Length = 393 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 63/171 (36%), Gaps = 9/171 (5%) Query: 1 MKHLIKKRTAKFLDDF-PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 +K L K+ K D + AGL + +A+ ++ SS ++ + + Sbjct: 41 LKELKKQSRIKISDTLFCAFFKEFALLLNAGLSIKEALNLMSENSSKHLKDAAKELNVNL 100 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + G +LS + S + + L E+S + GNL+ + ++ + K + Sbjct: 101 NSGQNLSVAFSNLALNLNLSELSL-----IKMGEKTGNLAYIFSQIAELRTKLILNKKRF 155 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + + +L L++F P ++++ + L+ Sbjct: 156 KKAIHYP---CLVFLALFGAFLFLMFFVVPEFLDIFESLGANLPLMTQILL 203 Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 13/130 (10%), Positives = 40/130 (30%), Gaps = 5/130 (3%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 I +++G +S A + + E + + LSL + + + + Sbjct: 262 YFFMIFSLLLQSGNALSQAFHLASSSVENKFLKEKFK-----QIELSLGQGLELSLAFKK 316 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L A ++ +++ ++ +E + + + Sbjct: 317 VGIFDELVISLLHSAMKSGTLDLLSAKIAHFYEEKQEDFIEIFLKFLEPLMTLLVGILVL 376 Query: 138 FCVSTLVYFT 147 F + Sbjct: 377 FLALGIFLPM 386 >gi|298345868|ref|YP_003718555.1| hypothetical protein HMPREF0573_10742 [Mobiluncus curtisii ATCC 43063] gi|304390427|ref|ZP_07372380.1| type II secretion system protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298235929|gb|ADI67061.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 43063] gi|304326183|gb|EFL93428.1| type II secretion system protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 408 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/176 (13%), Positives = 56/176 (31%), Gaps = 14/176 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI----------ETQHLGLSLSESISRM 72 I + AG +++A + + + + H + + + Sbjct: 87 IATRLEAGASIANAWDTTLHRLDARLDYAAIQAFVAHPRPGLWERFNHWRAGRTTETNPL 146 Query: 73 VRYMPLQEVSFFSTVISVQSQLGG----NLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 R + + + + +Q+ L+E L ++ + AK + KA Sbjct: 147 ARVRHPEAAAQALRGMLIATQVATQVGAPLAEILNRVADGIAATLETAAKRHTAQVGPKA 206 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +A ++G LP + F +++ + + M+ G + MI Sbjct: 207 TARLLGVLPLAALGMAQFIGVDVIDMAFRGGINTWVFVIGLGLMVAGNLWSAAMIR 262 >gi|124486353|ref|YP_001030969.1| hypothetical protein Mlab_1538 [Methanocorpusculum labreanum Z] gi|124363894|gb|ABN07702.1| type II secretion system protein [Methanocorpusculum labreanum Z] Length = 601 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 55/152 (36%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 + ++ K P L I G+ + A+++I G + + SE + V + G Sbjct: 392 IRRRYVTKVEKQLPEFLREIADMRDIGMTLQGAISMISGNKTGVLSSEIKIVTKELSYGA 451 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 LS ++ RM + L V +++ S++ + E L L MK+K +S Sbjct: 452 HLSNALVRMEERIGLVSVKRAISLLVKASEVTDYVREILTIAISDLEHYVKMKSKRLNVS 511 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A ++ + + + Sbjct: 512 FVYLAVIYLSFGIYLYSAYQMNVAFISSFTSF 543 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/174 (11%), Positives = 59/174 (33%), Gaps = 7/174 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQHLG 62 + R K D P A+ + +++ + + + + + V E ++ L Sbjct: 97 AQGRKNKIEQDLPFAITYM-QALSSTITLYEIFRSVYEAADLYGEVSRECGLIVRDVELF 155 Query: 63 L-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 L +I ++ P + +++ + GGN+ + S R+ + Sbjct: 156 GEDLLTAIENTIKITPSENFRELLNDLALVYRSGGNMRNFFNSKSESYREIARQQLDALL 215 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 +E A ++ + ++ ++ + + G+++ + L Sbjct: 216 QFLEMIAEVYVTAFVAGPIAIMIMLVAQNLSG---QNTMGNIMPIMMVFLPLGA 266 >gi|187923649|ref|YP_001895291.1| type II secretion system protein [Burkholderia phytofirmans PsJN] gi|187714843|gb|ACD16067.1| type II secretion system protein [Burkholderia phytofirmans PsJN] Length = 336 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 60/157 (38%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 ++ KR +D+ P +D++ GL + ++ V+V + E Sbjct: 173 LRRRAGKRRHAVVDELPLLVDLLRLLQGVGLSLDQSLQVVVNDFRGMLPVLAGELEIAQR 232 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S++R+ +++ ++ GG + E L LR+ + Sbjct: 233 QFAAGRTREQSLNRLASSYDNEDLRAVVRLLVQVDLHGGAVQEPLKQFGDRLREARRAML 292 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + + K + +I +L + ++ PG + V Sbjct: 293 RERIGRLAVKMTGVMIVTLLPAL--MIVTAGPGVLAV 327 >gi|167760252|ref|ZP_02432379.1| hypothetical protein CLOSCI_02625 [Clostridium scindens ATCC 35704] gi|167662135|gb|EDS06265.1| hypothetical protein CLOSCI_02625 [Clostridium scindens ATCC 35704] Length = 349 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 12/147 (8%), Positives = 46/147 (31%), Gaps = 5/147 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + + + +++G+ + V++++ + E V+ L+ + Sbjct: 13 EIASFCSQMAMILKSGISSIEGVSIMLQDARGSDEKELLTVMNDV-----LTHTGILHEA 67 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + G L + + +L+ ++ ++ +++ Sbjct: 68 LKKTGAFPGYLLNMVRIGEQTGRLDDVMQSLAEYYEKEASLAQTIKNAVTYPLIMIFMMI 127 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRG 161 + + T V L ++ G Sbjct: 128 LVIIVLITKVMPVFNQVFKQLGSEMTG 154 >gi|289177984|gb|ADC85230.1| hypothetical protein BIF_00599 [Bifidobacterium animalis subsp. lactis BB-12] Length = 264 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/192 (11%), Positives = 58/192 (30%), Gaps = 27/192 (14%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQ-------------------SSDPVRSEFRRVIETQ 59 L I+ S++AG + A+ +S + + Sbjct: 69 MLSSIIASLQAGAALEPALERAFDSVFPERRCGGARARHMRDPTTSGDGHAVGVYAVCDG 128 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVIS--------VQSQLGGNLSEALANLSRILRD 111 + +++ E + ++ V +LG + L + Sbjct: 129 EGNVDVTQMARLFAACRLPHERASHCAQVACGVAVASAVSLELGCPAARCLEAVRAGYLR 188 Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 + K++A ++ +LP V L + +L +G +L + Sbjct: 189 ARLQDDLRANAFAMPKSTARMLLALPAVVVFLGELLGADPLGMLFGSAQGRAMLCLGTIC 248 Query: 172 MLIGIMVMRLMI 183 + G++ M+ ++ Sbjct: 249 YVGGLLWMQRLL 260 >gi|76800734|ref|YP_325742.1| transmembrane protein (type II secretion system proteins TadC) [Natronomonas pharaonis DSM 2160] gi|76556599|emb|CAI48170.1| transmembrane protein (homolog 4 to type II secretion system proteins TadC) [Natronomonas pharaonis DSM 2160] Length = 615 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 62/183 (33%), Gaps = 9/183 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQ 59 ++ + R P A+ + + + + Q + +E RRV+ Sbjct: 120 LRWRVDARRTAIERTLPGAVRYLRALADGSEGRREMLRRVAKQDAYGETSAELRRVLRKA 179 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTV-ISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L SL + + R P +E+ + + G + + + + + + + Sbjct: 180 ELTGSLDSGLRSVARETPSRELLSPFLLKFREHANQGSDALQGYLRMESRMLSHQRSRER 239 Query: 119 VQ-----ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHMLLGVAAAF 171 + L E ++ +L + T++ +PG + +P LL +A Sbjct: 240 QRAGDYLELLAELFIVLLVLPALLVIIVTVMSVLAPGLSRPVPIPGEPTMRALLVYGSAA 299 Query: 172 MLI 174 ++ Sbjct: 300 FVL 302 Score = 39.3 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 20/159 (12%), Positives = 49/159 (30%), Gaps = 11/159 (6%) Query: 8 RTAKFL----DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIET---- 58 R A+ + + + + V G P +AV + + P++++ + Sbjct: 386 RRARLDDAKDREIRDFVHAVAGHVSLGKPFDEAVQTVAEEVDFGPLQADVDDLAFRLGLT 445 Query: 59 --QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 G + E++ R V + +++ +G + L + + + Sbjct: 446 TGTRDGGTRREALDRFVERVGTPLSEQTVGLVTGALSVGSDAETTFETLQTEIGSLYHQR 505 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 K+++ A W L + V L Sbjct: 506 KKLRSAMAVYVAVGWTTALLVVGIVVAVNAYVLDGFAQL 544 >gi|302389892|ref|YP_003825713.1| Type II secretion system F domain protein [Thermosediminibacter oceani DSM 16646] gi|302200520|gb|ADL08090.1| Type II secretion system F domain protein [Thermosediminibacter oceani DSM 16646] Length = 377 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 22/164 (13%), Positives = 48/164 (29%), Gaps = 9/164 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + +G+PV + ++V+ Q S + RRVI G +LSE+ Sbjct: 40 RELAVFCRQMASMLESGIPVIECLSVMCQQNSHPGLTRALRRVIRDLKRGFTLSEAFRNQ 99 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P ++ G L + L L+ + +++ + Sbjct: 100 PGIFP-----EILIYTVETGEIAGCLEDILKKLAVHFETMAKYRERLKTSMTYPA---IL 151 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 P Y N+ ++ + + Sbjct: 152 GAVALVVFYYTSNNILPVYSNMFEESGVYLPVITRIFMSVSTNM 195 Score = 35.5 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 14/136 (10%), Positives = 33/136 (24%), Gaps = 6/136 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 ++ + G+P+ A+ ++ + V +V + + Sbjct: 248 LCRVLAILISCGIPLVKAIEIVESAQKNQVFKRDLQVALENLRIG------KNLAVSLRD 301 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + G L E L + A + + F Sbjct: 302 SSFPPLMLKMLQVGIESGKLEEMLFKTADFYDSEVEDMQSRLLSIAGPAALILMSLIIGF 361 Query: 139 CVSTLVYFTSPGYMNV 154 V ++V Y + Sbjct: 362 AVISIVLPMFNIYSSF 377 >gi|226309727|ref|YP_002769621.1| hypothetical protein BBR47_01400 [Brevibacillus brevis NBRC 100599] gi|226092675|dbj|BAH41117.1| hypothetical membrane protein [Brevibacillus brevis NBRC 100599] Length = 304 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/154 (12%), Positives = 59/154 (38%), Gaps = 2/154 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + K+ A+ + P I+ V AG+P+ AV + + E + + Sbjct: 149 LDRVDKRAKAEIREQVPIFFSIVQSLVEAGMPLQQAVKQTARRFDARLGRELASLEMGEK 208 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + +++ + + ++ + ++ + G ++S+ L+ ++ +A Sbjct: 209 RHGNWRKALEELAFRWEVDSLTTIALEMNEAMKKGVSISQMLSVQVEEQVRQQEDEAATH 268 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + ++I + + LV P ++ + Sbjct: 269 MNRLNIRLLPFVIMLMGLPLLFLV--MGPAFIGI 300 >gi|254282483|ref|ZP_04957451.1| general secretion pathway protein F [gamma proteobacterium NOR51-B] gi|219678686|gb|EED35035.1| general secretion pathway protein F [gamma proteobacterium NOR51-B] Length = 406 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 54/164 (32%), Gaps = 9/164 (5%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLS 66 R + + V + LP+ + + + Q+ +V G +L+ Sbjct: 61 RRRLGAAEIALITRQLATLVASALPLDECLQAVAEQTRKSSTKALLLQVRSKVAEGYTLA 120 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 S+S+ + + G L+ L L+ +R++ K+Q + Sbjct: 121 SSMSQFPGAFGD-----MYRAMVHAGEQAGQLAPVLEQLADYTENRQHTAQKLQMAMIYP 175 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + + V+ L+ F P + + + + L VA Sbjct: 176 LVLVAVAIA---VVAALMVFVVPELVGIFAHTQKDLPALTVALI 216 Score = 35.9 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 19/131 (14%), Positives = 45/131 (34%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMP 77 + + +G+P+ DA+ + S+ V + R + G SL+ ++++ + P Sbjct: 275 FSSTLSILMASGVPLLDALRIAGAVMSNLVLQDSSRAVAVRVQEGSSLNRALAQEPFFPP 334 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G+L LA + M E ++ G + Sbjct: 335 M------MVHMVGSGEASGDLETMLARSANNQERELEMTLGTVMGLFEPLMVVFMGGLVL 388 Query: 138 FCVSTLVYFTS 148 V ++ Sbjct: 389 AIVLAILLPIF 399 >gi|307327612|ref|ZP_07606797.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] gi|306886724|gb|EFN17725.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] Length = 305 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/184 (9%), Positives = 55/184 (29%), Gaps = 4/184 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 + R + L+ + AG+ ++ + + P+ + + + E G+ Sbjct: 104 AAQARIERLE-ALGQWLNHLAGVHTAGISLTQTIRASAKAAPAPIAANVQALAERLRAGM 162 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAKVQAL 122 + + + + + L++AL L+ + + V+A Sbjct: 163 DAHAAFALFADELADGVSDHVVLLFQSHAVYKGPGLADALEALAITIHQQAADARDVEAD 222 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + ++ + + V + P G ++L + +R + Sbjct: 223 RAKVRKASRQVSVVICVVVIGCMLN--QAWSGWYASPLGQIVLAALGGAFAWTLSWLRRI 280 Query: 183 INFD 186 Sbjct: 281 ARTK 284 >gi|107021655|ref|YP_619982.1| type II secretion system protein [Burkholderia cenocepacia AU 1054] gi|116688601|ref|YP_834224.1| type II secretion system protein [Burkholderia cenocepacia HI2424] gi|105891844|gb|ABF75009.1| type II secretion system protein [Burkholderia cenocepacia AU 1054] gi|116646690|gb|ABK07331.1| type II secretion system protein [Burkholderia cenocepacia HI2424] Length = 403 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/138 (11%), Positives = 44/138 (31%), Gaps = 6/138 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + ++AGLP++ ++ ++ ++ D V + G +++++R Sbjct: 69 FTRQLASLLQAGLPLAPSLEMLARTRTRDGVPRIAAGLAREIVGGRRFADALARYPSQFG 128 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+L L ++ K++A A ++ Sbjct: 129 -----TLYRQLIEVGEASGSLGIVLTRVAEHRERADAQWRKLRAALAYPAAVILFALAIS 183 Query: 138 FCVSTLVYFTSPGYMNVL 155 + V T + Sbjct: 184 AALMVWVVPTFRQIFDGF 201 Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 41/130 (31%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P++DA A + + + G+ L++++ + Sbjct: 273 WCRSLATLLGAGVPLADAFATLERTAGHPVFAHATAHIAARVLRGVRLADAMHSAGCFPD 332 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ G L LA+++ + + + + A E + + Sbjct: 333 DVVQP------IAVAEETGALDTMLADIAALCERQLDARLDTLAALGEPLIVIVLGALVG 386 Query: 138 FCVSTLVYFT 147 V + Sbjct: 387 GLVIAMYLPI 396 >gi|315654444|ref|ZP_07907352.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333] gi|315491479|gb|EFU81096.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333] Length = 408 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/176 (13%), Positives = 56/176 (31%), Gaps = 14/176 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI----------ETQHLGLSLSESISRM 72 I + AG +++A + + + + H + + + Sbjct: 87 IATRLEAGASIANAWDTTLHRLDTRLDYAAIQAFVAHPRSGLWERLNHWRAGRTAETNPL 146 Query: 73 VRYMPLQEVSFFSTVISVQSQLGG----NLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 R + + + + +Q+ L+E L ++ + AK + KA Sbjct: 147 ARVRHPEAAAQALRGMLIATQVATQVGAPLAEILNRVADGIAATLETAAKRHTAQVGPKA 206 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +A ++G LP + F +++ + + M+ G + MI Sbjct: 207 TARLLGVLPLAALGMAQFIGVDVIDMAFQGGINTWVFVIGLGLMVAGNLWSAAMIR 262 >gi|254180565|ref|ZP_04887163.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei 1655] gi|184211104|gb|EDU08147.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei 1655] Length = 405 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/153 (11%), Positives = 42/153 (27%), Gaps = 6/153 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AGL ++ ++ ++ + + + G S ++ R R Sbjct: 71 FARQLAGLLHAGLALAPSLELLAQATQRSEMPRVAAGLAREIVAGRQFSAALRRYPRQFD 130 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 F + + G L+ L L+ A+V+ A ++ Sbjct: 131 P-----FFCQLVAVGETAGALAAVLTRLADDRERAAAQYARVKGALAYPAAVLLFALAIT 185 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + V T +A + Sbjct: 186 AALLVWVVPTFEQIFAGFGAPLPAPTRFVLALS 218 >gi|330981426|gb|EGH79529.1| type II secretion system protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 400 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 11/166 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + AG P+ ++ +++ Q ++ R+ E G LS ++ Sbjct: 62 AALVSFTQQLATLLGAGQPLERSLGILLKQPGQSQTKALIERIREQVKAGKPLSVALEEE 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 S + + GG L L LS L + ++ +V + ++ Sbjct: 122 GSQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPA---FL 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + ++ L+ + P ++ + + G + + + +G + Sbjct: 174 VVGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGEFL 217 >gi|319786553|ref|YP_004146028.1| general secretion pathway protein F [Pseudoxanthomonas suwonensis 11-1] gi|317465065|gb|ADV26797.1| general secretion pathway protein F [Pseudoxanthomonas suwonensis 11-1] Length = 399 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 55/167 (32%), Gaps = 7/167 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 D + + A P+ +A+ I QS VR V G L++++ Sbjct: 61 KDLALFTRQLST-LAASAPLEEALRTIASQSDRRGVRRVVGAVHAQLLEGFRLADAMGSA 119 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R P + + G L + L L+ +L ++ ++ K+ A + A A Sbjct: 120 GRSFPP-----LYRAMVAAGESSGALPQILERLAGLLERQQQVRGKLVAALVYPAALAVT 174 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ + T V + L + + + G + Sbjct: 175 AVAVVIALMTFVVPRVVEQFDSLGRELPWLTRAVIGMSEFSRGWGWL 221 Score = 43.6 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 15/131 (11%), Positives = 41/131 (31%), Gaps = 5/131 (3%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + + +GLP+ + + + ++ V + R + + R Sbjct: 266 AHMARTLAIMLGSGLPLVEGLRITARTVNNRVLQQATRTMADSIHEGGSLSAAMRHAAVF 325 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 P ++ + G+L+ L + L + A +E + G + Sbjct: 326 PP-----TLLYMTSSGENSGHLAPMLERAADYLEREFDTFANAGMSLLEPVIIVALGGVV 380 Query: 137 PFCVSTLVYFT 147 V +++ Sbjct: 381 ALIVLSILLPI 391 >gi|126441895|ref|YP_001060517.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei 668] gi|126221388|gb|ABN84894.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei 668] Length = 405 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/153 (11%), Positives = 42/153 (27%), Gaps = 6/153 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AGL ++ ++ ++ + + + G S ++ R R Sbjct: 71 FARQLAGLLHAGLALAPSLELLAQATQRSEMPRVAAGLAREIVAGRQFSAALRRYPRQFD 130 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 F + + G L+ L L+ A+V+ A ++ Sbjct: 131 P-----FFCQLVAVGETAGALAAVLTRLADDRERAAAQYARVKGALAYPAAVLLFALAIT 185 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + V T +A + Sbjct: 186 AALLVWVVPTFEQIFAGFGAPLPAPTRFVLALS 218 >gi|76808777|ref|YP_334898.1| type IV pilus assembly protein PilC [Burkholderia pseudomallei 1710b] gi|126451673|ref|YP_001067768.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei 1106a] gi|134280494|ref|ZP_01767205.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei 305] gi|242315079|ref|ZP_04814095.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei 1106b] gi|254190995|ref|ZP_04897501.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei Pasteur 52237] gi|254199040|ref|ZP_04905455.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei S13] gi|254262026|ref|ZP_04953080.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei 1710a] gi|254299347|ref|ZP_04966797.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei 406e] gi|76578230|gb|ABA47705.1| type IV pilus assembly protein PilC [Burkholderia pseudomallei 1710b] gi|126225315|gb|ABN88855.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei 1106a] gi|134248501|gb|EBA48584.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei 305] gi|157808972|gb|EDO86142.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei 406e] gi|157938669|gb|EDO94339.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei Pasteur 52237] gi|169656870|gb|EDS88267.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei S13] gi|242138318|gb|EES24720.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei 1106b] gi|254220715|gb|EET10099.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei 1710a] Length = 405 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/153 (11%), Positives = 42/153 (27%), Gaps = 6/153 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AGL ++ ++ ++ + + + G S ++ R R Sbjct: 71 FARQLAGLLHAGLALAPSLELLAQATQRSEMPRVAAGLAREIVAGRQFSAALRRYPRQFD 130 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 F + + G L+ L L+ A+V+ A ++ Sbjct: 131 P-----FFCQLVAVGETAGALAAVLTRLADDRERAAAQYARVKGALAYPAAVLLFALAIT 185 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + V T +A + Sbjct: 186 AALLVWVVPTFEQIFAGFGAPLPAPTRFVLALS 218 >gi|255514159|gb|EET90421.1| type II secretion system protein [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 344 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 21/168 (12%), Positives = 60/168 (35%), Gaps = 5/168 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + I R K + I ++R+G+ + ++ + + + + Sbjct: 81 INYKIDDRKTKMEGMLSDYFQIASANLRSGIAMDRSLLLAARPEFKFFADDIKEMNRQIF 140 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++ + + + ++ + GG +++ L LS+ +R+++ M+ +V Sbjct: 141 SGQTMESGLKYLAGRYKSFTLDHAIRMMIEAQRYGGAMADLLDQLSKDIRNQQLMQKEVA 200 Query: 121 ALSMEAKASAWIIGSLPFCVST-----LVYFTSPGYMNVLINDPRGHM 163 G + V ++ T + +L ++P G Sbjct: 201 GQLFMYSIFIAFAGLVAAPVLYGLTSQMITITDAVWKGILASNPGGLP 248 >gi|53720618|ref|YP_109604.1| type IV pilus assembly protein PilC [Burkholderia pseudomallei K96243] gi|52211032|emb|CAH37020.1| type IV pilus assembly protein PilC [Burkholderia pseudomallei K96243] Length = 405 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/153 (11%), Positives = 42/153 (27%), Gaps = 6/153 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AGL ++ ++ ++ + + + G S ++ R R Sbjct: 71 FARQLAGLLHAGLALAPSLELLAQATQRSEMPRVAAGLAREIVAGRQFSAALRRYPRQFD 130 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 F + + G L+ L L+ A+V+ A ++ Sbjct: 131 P-----FFCQLVAVGETAGALAAVLTRLADDRERAAAQYARVKGALAYPAAVLLFALAIT 185 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + V T +A + Sbjct: 186 AALLVWVVPTFEQIFAGFGAPLPAPTRFVLALS 218 >gi|15668960|ref|NP_247764.1| hypothetical protein MJ_0779 [Methanocaldococcus jannaschii DSM 2661] gi|2833584|sp|Q58189|Y779_METJA RecName: Full=Uncharacterized protein MJ0779 gi|1499599|gb|AAB98769.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM 2661] Length = 299 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 66/143 (46%), Gaps = 1/143 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L + + ++ P AL I++ ++ +G +++A+ +V + V FR+V+ Sbjct: 75 LYENKIETLENNIPQALYIMILALESGRSINEALLEVVKSNIKEVSDIFRKVLYLMENQK 134 Query: 64 -SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S ES++ + + + + ++ + GG+LS++L L++ L D K K ++ ++ Sbjct: 135 LSFEESMTIVSNLYDSKVLRMLARIMIENRKYGGDLSDSLKILAKTLEDFKMYKRQLLSV 194 Query: 123 SMEAKASAWIIGSLPFCVSTLVY 145 + A +II + Sbjct: 195 TASGLAIGFIILCGVIPAVAALL 217 >gi|53726066|ref|YP_104076.1| type IV pilus biogenesis protein PilC [Burkholderia mallei ATCC 23344] gi|52429489|gb|AAU50082.1| type IV pilus biogenesis protein PilC [Burkholderia mallei ATCC 23344] Length = 377 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/153 (11%), Positives = 41/153 (26%), Gaps = 6/153 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AGL ++ ++ ++ + + + G S ++ R R Sbjct: 43 FARQLAGLLHAGLALAPSLELLAQATQRSEMPRVAAGLAREIVAGRQFSAALRRYPRQFD 102 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 F + + G L+ L L+ A+V+ ++ Sbjct: 103 P-----FFCQLVAVGETAGALAAVLTRLADDRERAAAQYARVKGALAYPATVLLFALAIT 157 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + V T +A + Sbjct: 158 AALLVWVVPTFEQIFAGFGAPLPAPTRFVLALS 190 >gi|171316226|ref|ZP_02905449.1| type II secretion system protein [Burkholderia ambifaria MEX-5] gi|171098640|gb|EDT43437.1| type II secretion system protein [Burkholderia ambifaria MEX-5] Length = 404 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/164 (9%), Positives = 45/164 (27%), Gaps = 6/164 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + ++AGLP++ ++ ++ ++ D + + G + +++R Sbjct: 65 REVTRFTRQLASLLQAGLPLAPSLEMLARTRTRDGLPRIAAGLAREIVGGQRFAAALARY 124 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L ++ K+ A A Sbjct: 125 PSQFG-----TLYRQLIEVGEASGALGTVLTRVAEHRECADAQWRKLCAALAYPVAVIVF 179 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 ++ + V T + +A + Sbjct: 180 ALAISAALMVWVVPTFRQIFDGFGAALPAPTRALLALSSATSAW 223 Score = 37.8 bits (86), Expect = 0.68, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 41/130 (31%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P++DA A + + ++ G L++++ + Sbjct: 274 WCRSLATLLGAGVPLADAFATLERTAGHPVFEQATAQIAARVLRGARLADAMHAAGCFPD 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ G L LA+++ + + + + A E + + Sbjct: 334 DVVQP------IAVAEETGALDTMLADIAALCERQLDARLDALAALGEPLIVIVLGALVG 387 Query: 138 FCVSTLVYFT 147 V + Sbjct: 388 GLVIAMYLPI 397 >gi|167463709|ref|ZP_02328798.1| type II secretion system protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 288 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 71/159 (44%), Gaps = 8/159 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI----VGQSSDPVRSEFRRVI 56 + +KK+ L + P L+ I+ V AG V + + P+++E + Sbjct: 132 LDQKLKKKKHSILIELPEFLNKIILLVDAGETVQASFIRCIDDRAEKPLSPLQAELIKCK 191 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTV-ISVQSQLGGNLSEALANLSRILRDRKNM 115 + +SL++S+ + R +QE+S F+T + + G +L+ AL NLS+ L +R+ Sbjct: 192 RELLMNVSLNKSLGELTRRCSMQEISMFTTTVLLNYKRGGHDLTVALRNLSKDLWERRKA 251 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 +++ +K + + +V +P M + Sbjct: 252 VSRILGEEASSKL---VFPMALIFLIVIVIVAAPAMMMM 287 >gi|114566084|ref|YP_753238.1| type II secretion system protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337019|gb|ABI67867.1| type II secretion system protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 402 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 9/148 (6%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + AG + A V+ ++ + ++ ++ + G +L ++S+ + Sbjct: 69 TRQFLAMLTAGFSIIKAFKVMGQKNRNRTLKKALLKIHDDIEQGQALWVALSQHPK---- 124 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 S + ++GG L L NLS L +++ AK++A S+ I Sbjct: 125 -VFSSIYINMIKAGEMGGTLETVLKNLSHHLEREQDINAKIKAASIYPL---IITLMALL 180 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLG 166 + ++ F P ++NV + L Sbjct: 181 VIFFIISFIMPAFVNVFASAGAEIPLPT 208 Score = 40.1 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 16/133 (12%), Positives = 41/133 (30%), Gaps = 7/133 (5%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + I+ ++AG+P+ A+ V G ++ V R+ G S+S + Sbjct: 269 AHFARIMAILLQAGIPILQALEVAGGVVGNEVVIQAIRQAGREISEGKSISVPLEATA-- 326 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + G+L A ++ + ++E ++ Sbjct: 327 ----IFDTMFAQMIAIGEESGSLDSMFAQIADYYEQEVIYTINILLAAVEPVMIIFVAIL 382 Query: 136 LPFCVSTLVYFTS 148 + + + Sbjct: 383 VTGIIIATILPVF 395 >gi|45442609|ref|NP_994148.1| putative general protein secretion protein [Yersinia pestis biovar Microtus str. 91001] gi|229837690|ref|ZP_04457850.1| General secretion pathway protein F / Type IIsecretory pathway, component PulF [Yersinia pestis Pestoides A] gi|45437474|gb|AAS63025.1| putative general protein secretion protein [Yersinia pestis biovar Microtus str. 91001] gi|229704067|gb|EEO91079.1| General secretion pathway protein F / Type IIsecretory pathway, component PulF [Yersinia pestis Pestoides A] Length = 402 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 56/183 (30%), Gaps = 19/183 (10%) Query: 5 IKKRTAKFLD----------DFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFR 53 IKKR F D I V A +P+ + + ++ Q S + + Sbjct: 44 IKKRILLFNKYVVKKNSNKTDLVLITRQIATLVNASMPLDEVLDIVGKQNSKSKMIEIIQ 103 Query: 54 RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 R+ G S ++++S S + ++ G+L L L+ + + Sbjct: 104 RIRVNIQEGHSFADALSPFPA-----VFSPLYKTMVTAGEVSGHLGLVLVRLADHIEQTQ 158 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 ++ K+ + ++ + L+ P + L + Sbjct: 159 KIQRKIIQALIYP---CVLVLISLSVIIILLTAVVPNIVEQFSFSETALPLSTKVLMILS 215 Query: 174 IGI 176 I Sbjct: 216 YSI 218 >gi|239624654|ref|ZP_04667685.1| type II secretion system protein [Clostridiales bacterium 1_7_47_FAA] gi|239521040|gb|EEQ60906.1| type II secretion system protein [Clostridiales bacterium 1_7_47FAA] Length = 403 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 52/157 (33%), Gaps = 6/157 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P + + AG+P+S A+AV + P+R R+ E+ H G +L E++ M Sbjct: 68 LPPLCRQLSAMLAAGVPLSHALAVSYESAQDGPLRDNLMRLRESIHKGSTLFEAMEEMPG 127 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 P + + G L L ++ + M KV+A + Sbjct: 128 VFPN-----LLVYMIQTGESSGKLDVMLGTMAEYYDREEEMNGKVRAAMTYPVILLGVTI 182 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 + T V M +L+ + Sbjct: 183 MSSVFMLTTVLPQFASMMKEQELPLLTRVLMSASLGL 219 >gi|221213259|ref|ZP_03586234.1| type IV fimbrial assembly protein PilC [Burkholderia multivorans CGD1] gi|221166711|gb|EED99182.1| type IV fimbrial assembly protein PilC [Burkholderia multivorans CGD1] Length = 401 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/145 (8%), Positives = 39/145 (26%), Gaps = 6/145 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + ++AGLP++ A+ ++ ++ + + G + +++ Sbjct: 62 RDVTRFTRQLASLLQAGLPLAPALDMLSRTRTHGGLPRIAAGLAREIVDGQRFAAALALY 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + L L ++ K++A Sbjct: 122 PSQFG-----TLYRQLIEVGEASSALGTVLMRIAEHRERADAQWRKLRAALAYPAVVILF 176 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIN 157 ++ + V T + Sbjct: 177 ALAIAAALMVWVVPTFRQIFDGFGT 201 Score = 35.9 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 41/130 (31%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P++DA A + + ++ G L++++ + Sbjct: 271 WCRSLATLLGAGVPLADAFATLERTAGHPVFERASTQIAARVLRGARLADAMQASGCFPD 330 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ G L LA+++ + + + + A E + + Sbjct: 331 DIVQP------IAVAEETGALDTILADIATLSEHQLDARIDTLAALGEPLIVIVLGALVG 384 Query: 138 FCVSTLVYFT 147 V + Sbjct: 385 GLVIAMYLPI 394 >gi|302185193|ref|ZP_07261866.1| type II secretion system protein [Pseudomonas syringae pv. syringae 642] Length = 294 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 68/157 (43%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + + ++R + + + + ++ +G+ V A+ V+ + + E R V+ Sbjct: 134 LAAVARRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLM 193 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL L E + + + + E+S +++ GG ++L L +++ DR+ + Sbjct: 194 RVDSGLELGEELRKTAALLDVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 253 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + AK S ++ L + ++ PG+M + Sbjct: 254 QEYISKLSAKMSVVMMVFLFPALLIVL--AGPGFMAI 288 >gi|264680614|ref|YP_003280524.1| type II secretion system protein [Comamonas testosteroni CNB-2] gi|262211130|gb|ACY35228.1| type II secretion system protein [Comamonas testosteroni CNB-2] Length = 317 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 56/144 (38%), Gaps = 5/144 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISR 71 + P +D++ G+ + + VI + E + + G + S R Sbjct: 168 ELPLFVDLLGLLQGTGMSLDQTLQVIGSDFGNVMPVLSREIQLANQQYSRGSTRERSFGR 227 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M ++ ++++ + GG + E L LR+++ K K + K +A Sbjct: 228 MSEVYQNDNLANLTSLMIQIDRYGGAVQEPLRIFGERLREQRKAKMKELIGKISVKMTAV 287 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL 155 ++ +L + + PG++ V+ Sbjct: 288 MVVTLLPALI--IITAGPGFLAVI 309 >gi|308185675|ref|YP_003929806.1| Protein transport protein hofC [Pantoea vagans C9-1] gi|308056185|gb|ADO08357.1| Protein transport protein hofC [Pantoea vagans C9-1] Length = 399 Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 20/179 (11%), Positives = 52/179 (29%), Gaps = 19/179 (10%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + + ++AGLP+++++A++ + LS + Sbjct: 63 DLILQLATLLKAGLPLAESLALLAEGHPHAGWRALMLALH----HRVLSGAPFSQALREW 118 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 Q + +L G L + L++ + + +V + ++ Sbjct: 119 PQIFPPLYPALMEVGELTGQLDVCCSELAQQQIRQHQLWHQVAKALRYPLFILLVAIAVT 178 Query: 138 FCVSTLVYFTS-----------PGYMNVLINDPRGHM----LLGVAAAFMLIGIMVMRL 181 + V P + ++ +L + ML G +R Sbjct: 179 CGMLLFVLPEFVAVYDSFDAPLPAFTAAVMQLSAALQEWGGVLAFGISLMLAGWHQLRR 237 >gi|307730002|ref|YP_003907226.1| type II secretion system F domain-containing protein [Burkholderia sp. CCGE1003] gi|307584537|gb|ADN57935.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1003] Length = 353 Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 57/144 (39%), Gaps = 5/144 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHLGLSLSESIS 70 D+ P +D++ GL + ++ V+V + E G + +S++ Sbjct: 203 DELPMLVDLLRLLQGVGLSLDQSLQVMVNDFRGVLPVLSGELEIAQRQFAAGRTREQSLA 262 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 R+ +++ ++ + GG + E L LR+ + + + M K + Sbjct: 263 RLASSFDNEDLRAVVRLLIQVDRHGGAVQEPLKQFGDRLRETRRAMLRERIGRMAVKMTG 322 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNV 154 +I +L + ++ PG ++V Sbjct: 323 VMILTLLPAL--MIVTAGPGVLSV 344 >gi|22127078|ref|NP_670501.1| general protein secretion protein [Yersinia pestis KIM 10] gi|108806452|ref|YP_650368.1| putative general protein secretion protein [Yersinia pestis Antiqua] gi|108813178|ref|YP_648945.1| general protein secretion protein [Yersinia pestis Nepal516] gi|229840716|ref|ZP_04460875.1| General secretion pathway protein F [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842728|ref|ZP_04462882.1| General secretion pathway protein F [Yersinia pestis biovar Orientalis str. India 195] gi|294503005|ref|YP_003567067.1| general protein secretion protein [Yersinia pestis Z176003] gi|21960132|gb|AAM86752.1|AE013921_3 putative general protein secretion protein [Yersinia pestis KIM 10] gi|108776826|gb|ABG19345.1| general protein secretion protein [Yersinia pestis Nepal516] gi|108778365|gb|ABG12423.1| putative general protein secretion protein [Yersinia pestis Antiqua] gi|229690208|gb|EEO82263.1| General secretion pathway protein F [Yersinia pestis biovar Orientalis str. India 195] gi|229697082|gb|EEO87129.1| General secretion pathway protein F [Yersinia pestis biovar Orientalis str. PEXU2] gi|262361040|gb|ACY57761.1| general protein secretion protein [Yersinia pestis D106004] gi|262364984|gb|ACY61541.1| general protein secretion protein [Yersinia pestis D182038] gi|294353464|gb|ADE63805.1| general protein secretion protein [Yersinia pestis Z176003] gi|320014114|gb|ADV97685.1| General secretion pathway protein F [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 348 Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 21/163 (12%), Positives = 51/163 (31%), Gaps = 9/163 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D I V A +P+ + + ++ Q S + +R+ G S ++++S Sbjct: 10 DLVLITRQIATLVNASMPLDEVLDIVGKQNSKSKMIEIIQRIRVNIQEGHSFADALSPFP 69 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + ++ G+L L L+ + + ++ K+ + ++ Sbjct: 70 A-----VFSPLYKTMVTAGEVSGHLGLVLVRLADHIEQTQKIQRKIIQALIYP---CVLV 121 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + L+ P + L + I Sbjct: 122 LISLSVIIILLTAVVPNIVEQFSFSETALPLSTKVLMILSYSI 164 >gi|229829728|ref|ZP_04455797.1| hypothetical protein GCWU000342_01825 [Shuttleworthia satelles DSM 14600] gi|229791717|gb|EEP27831.1| hypothetical protein GCWU000342_01825 [Shuttleworthia satelles DSM 14600] Length = 464 Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 22/153 (14%), Positives = 50/153 (32%), Gaps = 10/153 (6%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---------GQSSDPVRSEFRR 54 +K+R D+P+ + I + AG+ V +A+ I GQ+ Sbjct: 306 AVKRRRENADRDYPSIISEIALYLSAGVTVKNALERISAAYEERRKQGQTGHEGYEALSL 365 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRK 113 ++ G+S ++ P S ++ + L+E + + Sbjct: 366 LVRRMKEGISERQAYEDWPGLCPTASYRKLSMLLIQNLQRGNRRLAELFEEEKQRAEEAG 425 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 ++ K + ++G L + L+ Sbjct: 426 RLRCKKLGDEASTRLLIPMVGLLAVVLMILLAP 458 >gi|148547559|ref|YP_001267661.1| type II secretion system protein [Pseudomonas putida F1] gi|148511617|gb|ABQ78477.1| type II secretion system protein [Pseudomonas putida F1] Length = 396 Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 65/179 (36%), Gaps = 13/179 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 ++ + +R A F D + + AGLP+ DA+ + +S R ++ Sbjct: 47 LRSMAWRREAAF--DLVLFSQELSTLLNAGLPLIDALESLAEKSPAATARKVLAELVRQL 104 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + G SLS+++ + R P + S+ G L +AL + ++ K+ Sbjct: 105 YEGRSLSQALGQQPRVFPP-----LYVALVQSSERTGALGDALTRYISYRQRLDLVRQKL 159 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 S+ + G + + V + G L ++ M +G+ + Sbjct: 160 VGASVYPLLLLLVGGGVVLFLLGYVVPRFSQVFEGM-----GTELPWLSRVLMQVGLFL 213 >gi|291541366|emb|CBL14477.1| hypothetical protein RO1_43290 [Roseburia intestinalis XB6B4] Length = 309 Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 64/185 (34%), Gaps = 2/185 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + AL II + + +V + + PV++ F + Sbjct: 120 IRLTASHFKKDVSSELETALSIITTAYLRSEDILTSVEENLEYLNPPVKTVFADFVSRIR 179 Query: 61 L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 L L ++ + + + + +L L + L D + + A++ Sbjct: 180 LIDPDLEAALEELKGKIENDVFMEWVDALKSCL-YDRSLKTTLTPIVVKLSDMRIVNAEL 238 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + L E + + L L+YF + + + L++ G ++L V A + + + Sbjct: 239 EYLVFEPRKEFITMVVLAVGNIPLLYFLNQSWYDTLMHTIPGQIMLAVIGAIIFVSTACV 298 Query: 180 RLMIN 184 + Sbjct: 299 IKLTK 303 >gi|167825910|ref|ZP_02457381.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei 9] Length = 387 Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 17/153 (11%), Positives = 41/153 (26%), Gaps = 6/153 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AGL ++ ++ ++ + + + G S ++ R R Sbjct: 53 FARQLAGLLHAGLALAPSLELLAQATQRSEMPRVAAGLAREIVAGRQFSAALRRYPRQFD 112 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 F + + G L+ L L+ A+V+ ++ Sbjct: 113 P-----FFCQLVAVGETAGALAAVLTRLADDRERAAAQYARVKGALAYPATVLLFALAIT 167 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + V T +A + Sbjct: 168 AALLVWVVPTFEQIFAGFGAPLPAPTRFVLALS 200 >gi|302390459|ref|YP_003826280.1| Type II secretion system F domain protein [Thermosediminibacter oceani DSM 16646] gi|302201087|gb|ADL08657.1| Type II secretion system F domain protein [Thermosediminibacter oceani DSM 16646] Length = 404 Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 61/150 (40%), Gaps = 9/150 (6%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65 +R K D + + AGLP+ A+ ++ Q+ + +R ++ + G + Sbjct: 58 RRVGK--QDLAVFCRQLATMLGAGLPIVPALQILAMQAENKILRRNIEEIVRSLEGGETF 115 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E+++R+ + P+ + + + GG+L EAL L+ L ++ KV++ Sbjct: 116 HEALARLQVFPPIMVHAIEAAEL------GGSLDEALEELAAHLEREHELQEKVKSALTY 169 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + ++ + V +N L Sbjct: 170 PALVVSVALAVLIVLLVFVLPAFQNMLNAL 199 >gi|254515202|ref|ZP_05127263.1| general secretion pathway protein F [gamma proteobacterium NOR5-3] gi|219677445|gb|EED33810.1| general secretion pathway protein F [gamma proteobacterium NOR5-3] Length = 406 Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 54/161 (33%), Gaps = 6/161 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRM 72 D + V++ LP++D + Q+ +++ +V G +L+ +++ Sbjct: 67 ADLALLTRQLATLVQSNLPLADCLQAAAEQTRRPRIKAMLLQVRSRVSEGHTLAYAMAEF 126 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G L L L+ R++ +++ + + Sbjct: 127 PLA-----FNEMYRAMVTAGEHAGFLGPVLEQLADYAERRQHSGQQLRMAMIYPFILLAV 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 ++ + V G + + G + +AA+ Sbjct: 182 AVAVIVALMVFVVPELIGIFSQSNRELPGLTVALIAASDFF 222 Score = 35.5 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 43/131 (32%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + +G+P+ +A+ + + +R+E V G SLS ++ + P Sbjct: 275 FASTLSILMASGVPLLEALRIAGQVLVNLVLRAESEDVALRVQEGSSLSRALGNAGHFPP 334 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G+L + L + M E ++ G + Sbjct: 335 M------MVHMVASGESSGSLEDMLERSANNQERELEMTLGTVMGLFEPLMVVFMGGMVL 388 Query: 138 FCVSTLVYFTS 148 V ++ Sbjct: 389 LIVLAILLPIF 399 >gi|116626806|ref|YP_828962.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116229968|gb|ABJ88677.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 404 Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 20/186 (10%), Positives = 61/186 (32%), Gaps = 17/186 (9%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 +R + + AG+P+ ++++ + R V+ Sbjct: 58 SFRKGRRRDIL-----FFTQELSTLLNAGVPLDRSLSITAELTEKPAFRFIVLDVLRVLK 112 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +L++S++ S + + G L+ L+ R R +++ + Sbjct: 113 GGRTLADSLATHPE-----YFSDLYVNMVRAGEASGALAIIFERLAEFERTRDDLRNYII 167 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGIM 177 + + A + + ++ L+ F P + + + L + + + ++ Sbjct: 168 SSMIYPALLACVGLAS---ITLLLTFVVPRFATIFSDSTMKIPLPTKIMLDVSNVVTAWW 224 Query: 178 VMRLMI 183 + + Sbjct: 225 WVAALA 230 >gi|330959999|gb|EGH60259.1| hypothetical protein PMA4326_15689 [Pseudomonas syringae pv. maculicola str. ES4326] Length = 294 Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 67/157 (42%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + K+R + + + + ++ +G+ V A+ V+ + + E R V+ Sbjct: 134 LAVAAKRRQKQVVLEISTFIPLLRILFESGMAVEQALRVLSSEGKELLPVLSDEIRVVLT 193 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL L E + + + + E+S +++ GG ++L L +++ DR+ + Sbjct: 194 RVDSGLELGEELRKTAALLAVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 253 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + AK S ++ L + ++ PG++ + Sbjct: 254 QEYISKLSAKMSMVMMAFLFPALLIVL--AGPGFIAI 288 >gi|322434575|ref|YP_004216787.1| Type II secretion system F domain protein [Acidobacterium sp. MP5ACTX9] gi|321162302|gb|ADW68007.1| Type II secretion system F domain protein [Acidobacterium sp. MP5ACTX9] Length = 399 Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 54/176 (30%), Gaps = 20/176 (11%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMPLQ 79 + ++AGLP+ ++ ++ + V G S+S + Sbjct: 67 QQFLTLIKAGLPILGSLDLLARRQKVLNFRAQLEDVATRVKTGESISSAFEAQG------ 120 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 T + + GNL E L R + K++A + ++ L Sbjct: 121 GFPIVYTTTLLAGERSGNLEEVLQRFLDFQRVSLTFRKKLKASLIYPSLLIVMVIGLFIF 180 Query: 140 VSTLVYFTSPGYMNVLINDPRGHML-------------LGVAAAFMLIGIMVMRLM 182 + T V + L + L VAA L+G ++ R M Sbjct: 181 LITFVVPRFAQLYDQLNTHLPALTVFLLDLGRNAQTYGLYVAAVVGLVGYLIYRWM 236 >gi|257069699|ref|YP_003155954.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810] gi|256560517|gb|ACU86364.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810] Length = 361 Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 65/177 (36%), Gaps = 5/177 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + + + ++ + + +G + A A + D + R + + Sbjct: 33 RRESTGPLEMAHLVEQLATVISSGAGLRQAWAALGRSLPDGELRDLARAAASGADPRRAA 92 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + R ++ ST ++V + G + L +L+ LRD + + Sbjct: 93 SARLRRTEM-----IASLSTALAVCERTGAPTAGMLQHLADALRDLHDAAQARRTAFAGP 147 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +++A I+ LP L + +L+ G++L A +G MR ++ Sbjct: 148 RSTARILLILPLAGLGLGMLLGGDPLRLLLTSGAGNLLALTGLALTALGWWWMRRLV 204 >gi|34556964|ref|NP_906779.1| MSHA biogenesis protein MshG [Wolinella succinogenes DSM 1740] gi|34482679|emb|CAE09679.1| MSHA BIOGENESIS PROTEIN MSHG [Wolinella succinogenes] Length = 415 Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 68/195 (34%), Gaps = 27/195 (13%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLG 62 + K K D P A + + AG+ + + +IV +++ ++ FR V+ + G Sbjct: 64 IRGKNRVKLEDMIP-AFRQMSLMLNAGISIHATIEDLIVFSANERLKLIFRDVLSGINSG 122 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 SLSE+ +++ S + + G+LS ALA L+ L + ++ AK + Sbjct: 123 KSLSEAFGA-----YQEDLGSLSLSLISLGEQTGSLSHALAMLAETLEEIRSNMAKFKKA 177 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR----------------GHMLLG 166 + + +V + + G M+L Sbjct: 178 LRYPTMVIGAMAIAFVLLIVMVIPKFKAIFDSFNAELPLPTRFLLQTEHILSNYGWMILA 237 Query: 167 VAAAFMLIGIMVMRL 181 G+ ++ Sbjct: 238 GLIT----GVWWIKR 248 >gi|329947749|ref|ZP_08294766.1| hypothetical protein HMPREF9056_02681 [Actinomyces sp. oral taxon 170 str. F0386] gi|328523577|gb|EGF50673.1| hypothetical protein HMPREF9056_02681 [Actinomyces sp. oral taxon 170 str. F0386] Length = 219 Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 41/100 (41%) Query: 85 STVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144 + + LG L++ L ++ + + + +A +A + +A ++ LP L Sbjct: 21 VASCRLSTALGAPLADILEAVAGGVAESGHAEASRRAALAGPRTTARLLACLPVVGLGLG 80 Query: 145 YFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +L++ G + + M++G +V R +I Sbjct: 81 MLVGADPTALLLDGGLGSAVGVLGIVLMVVGHLVTRRLIR 120 >gi|170023255|ref|YP_001719760.1| type II secretion system protein [Yersinia pseudotuberculosis YPIII] gi|169749789|gb|ACA67307.1| type II secretion system protein [Yersinia pseudotuberculosis YPIII] Length = 400 Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 56/183 (30%), Gaps = 19/183 (10%) Query: 5 IKKRTAKFLD----------DFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFR 53 IKKR F D I V A +P+ + + ++ Q S + + Sbjct: 42 IKKRILLFNKYVVKKNSNKTDLVLITRQIATLVNASMPLDEVLDIVGKQNSKSKMIEIIQ 101 Query: 54 RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 R+ G S ++++S S + ++ G+L L L+ + + Sbjct: 102 RIRVNIQEGHSFADALSPFSA-----VFSPLYKTMVTAGEVSGHLGLVLVRLADHIEQTQ 156 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 ++ K+ + ++ + L+ P + L + Sbjct: 157 KIQRKIIQALIYP---CVLVLISLSVIIILLTAVVPNIVEQFSFSETALPLSTKVLMILS 213 Query: 174 IGI 176 I Sbjct: 214 YSI 216 >gi|313107717|ref|ZP_07793899.1| putative type II secretion system protein [Pseudomonas aeruginosa 39016] gi|310880401|gb|EFQ38995.1| putative type II secretion system protein [Pseudomonas aeruginosa 39016] Length = 395 Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 72/177 (40%), Gaps = 13/177 (7%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQH 60 ++L +R K ++ A+ + + AG+ ++DAV + + S + + Sbjct: 46 RNLGSRRRLK-AEELNMAIHELATMLAAGVSMADAVEAQERGARHPKLISALQAMANGLR 104 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S + ++ + + ++ GNL+ AL + + + + +A++Q Sbjct: 105 QGQSFPVVLESAGL-----DLPRYVYQLVAAGEMTGNLAGALRDCATQMEYERRTRAELQ 159 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + ++ S V+TL F P + N+L + L +A A + IG+ Sbjct: 160 GALIYPA---ILVLSGVLAVATLFVFVVPKFANLLNETAQ---LPWLAWAVLSIGVW 210 >gi|15597872|ref|NP_251366.1| type II secretion system protein [Pseudomonas aeruginosa PAO1] gi|296388862|ref|ZP_06878337.1| type II secretion system protein [Pseudomonas aeruginosa PAb1] gi|9948747|gb|AAG06064.1|AE004695_17 probable type II secretion system protein [Pseudomonas aeruginosa PAO1] Length = 395 Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 72/177 (40%), Gaps = 13/177 (7%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQH 60 ++L +R K ++ A+ + + AG+ ++DAV + + S + + Sbjct: 46 RNLGSRRRLK-AEELNMAIHELATMLAAGVSMADAVEAQERGARHPKLISALQAMANGLR 104 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S + ++ + + ++ GNL+ AL + + + + +A++Q Sbjct: 105 QGQSFPVVLESAGL-----DLPRYVYQLVAAGEMTGNLAGALRDCATQMEYERRTRAELQ 159 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + ++ S V+TL F P + N+L + L +A A + IG+ Sbjct: 160 GALIYPA---ILVLSGVLAVATLFVFVVPKFANLLNETAQ---LPWLAWAVLSIGVW 210 >gi|302535289|ref|ZP_07287631.1| predicted protein [Streptomyces sp. C] gi|302444184|gb|EFL16000.1| predicted protein [Streptomyces sp. C] Length = 306 Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 64/170 (37%), Gaps = 3/170 (1%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR---VIETQHLGLSLSESISRMVR 74 +V +RAG A+ V + +++ V+ G ++ ++ + R Sbjct: 133 ELCGAVVGELRAGAQPGRALTVAIRRTAAGPGGPGAAETGVLAAAAFGGDVAGALHQAAR 192 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + ++ + V G L+ L L LR ++ + ++A A+++ ++ Sbjct: 193 EPGARGLAGMAACWRVSVDGGAGLAAGLDRLEGALRAERDREESLRAQLAGARSTTVVLA 252 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 LP + + VL++ P G L +G++ R ++ Sbjct: 253 LLPLVGLLMGTALGADPLRVLLHSPVGWGCLLAGGLLETLGLLWCRRIVR 302 >gi|146307946|ref|YP_001188411.1| general secretion pathway protein F [Pseudomonas mendocina ymp] gi|145576147|gb|ABP85679.1| general secretion pathway protein F [Pseudomonas mendocina ymp] Length = 405 Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 22/164 (13%), Positives = 45/164 (27%), Gaps = 6/164 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + V+A LP+ +A+ ++ ++ V G SL+ S+ Sbjct: 66 RDLALVTRQLATLVQAALPIEEALRAAAAQSTNARIQGMLLAVRARVLEGHSLAGSLREF 125 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P + G+L L L+ R+ + KVQ + Sbjct: 126 PAAFP-----ELYRATVAAGEHAGHLGPVLEQLADYTEQRQQSRQKVQLALLYPLILMCA 180 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + + V + +A + + Sbjct: 181 SLLIVGFLLGYVVPDVVKVFVDSGQTLPTLTRVLIAVSDWVKAW 224 Score = 38.2 bits (87), Expect = 0.59, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 46/130 (35%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + R+G+P+ +A+A+ + V E + G SL+ S+ ++ P Sbjct: 274 FASTLAILTRSGVPLVEALAIAGEVIGNRVIRGEVLVAAQKVREGGSLTRSLEATGQFPP 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L + LA ++ + + + + E ++ + Sbjct: 334 M------MLHMIASGERSGELDQMLARTAKNQENDLSAQIALLVGLFEPFMLVFMGAVVL 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 VIVLAILLPI 397 >gi|167904369|ref|ZP_02491574.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei NCTC 13177] Length = 387 Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 18/153 (11%), Positives = 42/153 (27%), Gaps = 6/153 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AGL ++ ++ ++ + + + G S ++ R R Sbjct: 53 FARQLAGLLHAGLALAPSLELLAQATQRSEMPRVAAGLAREIVAGRQFSAALRRYPRQFD 112 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 F + + G L+ L L+ A+V+ A ++ Sbjct: 113 P-----FFCQLVAVGETAGALAAVLTRLADDRERAAAQYARVKGALAYPAAVLLFALAIT 167 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + V T +A + Sbjct: 168 AALLVWVVPTFEQIFAGFGAPLPAPTRFVLALS 200 >gi|15605299|ref|NP_220085.1| general secretion pathway protein F [Chlamydia trachomatis D/UW-3/CX] gi|3329011|gb|AAC68172.1| Gen. Secretion Protein F [Chlamydia trachomatis D/UW-3/CX] Length = 391 Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 24/193 (12%), Positives = 59/193 (30%), Gaps = 15/193 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 ++ + ++ + +V +R+G+ + DA+ + Q + ++E Sbjct: 42 IRKVRERNYRVTTTELVIFTKQLVLLLRSGISLYDALTSLRDQYQGRALAGVLTSLMEAL 101 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SE+++R F + GNL AL N+ ++L +++ + + Sbjct: 102 RSGGVFSEALARFP-----HIFDSFYQNSVRSGESIGNLEGALMNIIKVLEEKEKLSKSL 156 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG---------VAAA 170 A ++ V T + + Sbjct: 157 AAALSYPVILLVFSCAVVVFFLIGVIPTLKETFEDMEMTRLTKAVFSCSTWFCRYKFLVL 216 Query: 171 FMLIGIMVMRLMI 183 IG + ++ Sbjct: 217 LGGIGGAISLRIV 229 >gi|269798144|ref|YP_003312044.1| type II secretion system protein [Veillonella parvula DSM 2008] gi|269094773|gb|ACZ24764.1| type II secretion system protein [Veillonella parvula DSM 2008] Length = 391 Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 21/159 (13%), Positives = 53/159 (33%), Gaps = 13/159 (8%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + + +G+P+ A+ ++ + + IE + + + Sbjct: 60 DVTYQLGLLIESGVPLRRALQLLCQGKRGLLYTALYESIERGQT----------LSQALR 109 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + + G L E+L +SR + +K KV + +++ + Sbjct: 110 SEGCPPIALALLESGEAAGTLGESLQYISRHYDWERQLKQKVISAISYPL---FLLLMMN 166 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + F P + NV L+ A + G+ Sbjct: 167 IFFLVTILFIIPSFENVFTTMHITLPLMTRALFVLGQGL 205 >gi|152985154|ref|YP_001346798.1| general secretion pathway protein F [Pseudomonas aeruginosa PA7] gi|150960312|gb|ABR82337.1| general secretion pathway protein F [Pseudomonas aeruginosa PA7] Length = 405 Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 9/155 (5%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPL 78 + V+A LP+ + ++ + Q R + G L+ ++ R P Sbjct: 72 TRQLATLVQAALPLEEVLSAVAAQCEKRSRQGMLLAIRSRVLEGHGLARAMGEFPRAFP- 130 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + G+L + L L+ R+ + ++Q + ++ + Sbjct: 131 ----ALYRATVAAGERAGHLGQVLMQLADYTEARQAARQQIQLAMLYPG---ILLLAAFG 183 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 V L+ F P + V I+ + +L + Sbjct: 184 IVGFLLGFVVPDVVKVFIDSGQELPVLTRGLIALS 218 Score = 39.3 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 44/130 (33%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + + R+G+P+ DA+ + ++ + V + G L+ ++ R + P Sbjct: 274 FVSTLAILGRSGVPLVDALEIAAEVVANQQIRTGLKDVARSVREGGGLTRALERSGHFPP 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L L +R + + + E ++ S+ Sbjct: 334 M------MLYMIASGERSGELDAMLDRAARQQEAQLANRIAMLVGLFEPAMLVFMGASVL 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 LIVLAILMPI 397 >gi|172041535|ref|YP_001801249.1| hypothetical protein cur_1856 [Corynebacterium urealyticum DSM 7109] gi|171852839|emb|CAQ05815.1| putative membrane protein [Corynebacterium urealyticum DSM 7109] Length = 386 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 29/208 (13%), Positives = 59/208 (28%), Gaps = 31/208 (14%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +++R + D ++ R V AG V+DAV L Sbjct: 31 RVQRRQLELFRDLADSC---AREVAAGARVADAVESAAADCEGDEADAEGDTGTRLGGQL 87 Query: 64 SLSESISRMVRYMP----------------------------LQEVSFFSTVISVQSQLG 95 +L + R+ Q+V F + + + G Sbjct: 88 ALVAAQVRLGALPTAALRDRGEVGSEGDRDGASTGNGSAELVAQDVEEFCELWELAERTG 147 Query: 96 GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + ++ L + K A A+ + ++ ++P + +L Sbjct: 148 MSFAPLADSIVADLEAHSAQQEKTAAAMAGARLTEVLLLAMPVGAVGIGQSMGLDPGGIL 207 Query: 156 INDPRGHMLLGVAAAFMLIGIMVMRLMI 183 G LL V A G++ + Sbjct: 208 FGSVIGLGLLLVGAMLACTGVLWTEALT 235 >gi|296130610|ref|YP_003637860.1| hypothetical protein Cfla_2776 [Cellulomonas flavigena DSM 20109] gi|296022425|gb|ADG75661.1| conserved hypothetical protein [Cellulomonas flavigena DSM 20109] Length = 243 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 24/172 (13%), Positives = 60/172 (34%), Gaps = 14/172 (8%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAV-AVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 +D + L + VRAG P A AV+ + V + + + + + + Sbjct: 80 EDLASVLHAVSARVRAGAPPGAAWGAVLGQTVTGDVPAVEALTAVVGDRSATRARARAVV 139 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 E G L++ L +L+ + ++++ +A+A + Sbjct: 140 AGAHVAAE-------------TGAPLADVLEHLADAVAADAEQAGELESALAGPRATARV 186 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + +LP + +VL + G + ++ G + ++ ++ Sbjct: 187 LAALPVLGLLVGAGMGARPWDVLTDGGFGSAVAVTGVGLLVAGQVWVQALLR 238 >gi|167847396|ref|ZP_02472904.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei B7210] gi|167895984|ref|ZP_02483386.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei 7894] gi|167912629|ref|ZP_02499720.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei 112] gi|167920597|ref|ZP_02507688.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei BCC215] Length = 387 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/153 (11%), Positives = 42/153 (27%), Gaps = 6/153 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AGL ++ ++ ++ + + + G S ++ R R Sbjct: 53 FARQLAGLLHAGLALAPSLELLAQATQRSEMPRVAAGLAREIVAGRQFSAALRRYPRQFD 112 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 F + + G L+ L L+ A+V+ A ++ Sbjct: 113 P-----FFCQLVAVGETAGALAAVLTRLADDRERAAAQYARVKGALAYPAAVLLFALAIT 167 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + V T +A + Sbjct: 168 AALLVWVVPTFEQIFAGFGAPLPAPTRFVLALS 200 >gi|329928959|ref|ZP_08282769.1| type II secretion system protein F domain protein [Paenibacillus sp. HGF5] gi|328937211|gb|EGG33638.1| type II secretion system protein F domain protein [Paenibacillus sp. HGF5] Length = 290 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 71/158 (44%), Gaps = 7/158 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIE 57 + + R + + P L+ IV V AG V A+ V +S P+ +E +R++ Sbjct: 134 LHKKVTLREQDIVMELPELLNKIVLLVGAGETVQRAIIHCVERNKDTSHPLYAELKRMVL 193 Query: 58 TQHLGLSLSESISRMVRYMPLQEVS-FFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 G ++ + + +QEVS F +TV+ + G + AL +LSR+L +++ Sbjct: 194 EWEGGHPFQQAFEQFNKRCGVQEVSIFTTTVLLNFRRGGNDFVLALRDLSRVLWEKRKAI 253 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + +K ++ + + +V +P +M + Sbjct: 254 TRTRGEQASSKL---VLPMVVIFMIVIVLLGAPAFMMM 288 >gi|326565934|gb|EGE16095.1| type IV pilus assembly protein PilC [Moraxella catarrhalis 103P14B1] gi|326575416|gb|EGE25341.1| type IV pilus assembly protein PilC [Moraxella catarrhalis 101P30B1] Length = 419 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/174 (9%), Positives = 58/174 (33%), Gaps = 7/174 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71 +L + + +G+ ++DA+ + ++ + ++ ++ + G + +++I+ Sbjct: 80 NKQILLSLRTLATLLTSGVVLTDALDIAAKTTTNGRLSNKLIQIKQCIEQGENFTQAIAS 139 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + + G L L + + ++++ A A Sbjct: 140 HPEFG------SLALALIDAGEKSGTLDIMLERAAEHAEQQALRQSQLNQALRYPAAIAL 193 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + V + + N+ L ++ + L L++ Sbjct: 194 TSLIVSTVMLLKVVPSFAASFGNMGNELPTITLWVLSLSQWLSANFWQLLLVAI 247 >gi|297159257|gb|ADI08969.1| hypothetical protein SBI_05849 [Streptomyces bingchenggensis BCW-1] Length = 268 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 39/130 (30%), Gaps = 3/130 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 P A D++ + AG A + P+ + LG S + RM Sbjct: 125 RQLPLAADLLTACLEAGAGPYKAAEAVGRSLGGPIGERLAQAAAELRLGGEPSAAWGRMG 184 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 ++ + G E+++ L+ R + +A + A+A + Sbjct: 185 ALPGAHGLAR---ALERAGTTGAPAVESMSRLAADCRAEQGRQADKRVERATVLATAPLG 241 Query: 134 GSLPFCVSTL 143 + Sbjct: 242 ACYLPAFLLI 251 >gi|154151924|ref|YP_001405542.1| type II secretion system protein [Candidatus Methanoregula boonei 6A8] gi|154000476|gb|ABS56899.1| type II secretion system protein [Methanoregula boonei 6A8] Length = 610 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 72/184 (39%), Gaps = 4/184 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQH 60 + + R +K D P A+ + +++ + + V I + + V EF +V+ Sbjct: 104 MIARGRKSKIDLDLPYAVSYM-QALSTTMSPFEVVKRIYEEKAMFNEVSLEFGQVVRDVE 162 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 L L ++ + + P F + V + GG+++ L+ + ++ + + Sbjct: 163 LFGDDLITALHNLQKTTPSPLFRDFVNDLGVVYESGGDITAYLSAKTEFFHEQAKRELDL 222 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++E A ++ + ++ ++ + G + + V +I I ++ Sbjct: 223 LLKTIEIMAEVYVSAFVAGPIALIIMIVAQGMTSAATMTWLVPFMYLVIPVGAIIMIWML 282 Query: 180 RLMI 183 LM+ Sbjct: 283 SLML 286 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 48/147 (32%), Gaps = 4/147 (2%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ++ P L + + GL + DA+ I + SE V G ++ ++ R Sbjct: 409 VENNIPEFLRELSDMIDIGLTLPDAIHRISNAKLGLLSSELAIVSRDVSTGAYVNSALVR 468 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + + V +++ S++ NL + ++++ Sbjct: 469 MEERIGVISVKRAISLLVKASEVTSNLRDIFVIAITDFEHYLKLRSE----RANTAIVYV 524 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLIND 158 +I L F + + G + Sbjct: 525 MIIYLSFGIYLYTAYQLNGPFMSSFSS 551 >gi|114571319|ref|YP_757999.1| type II secretion system protein [Maricaulis maris MCS10] gi|114341781|gb|ABI67061.1| type II secretion system protein [Maricaulis maris MCS10] Length = 400 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 59/169 (34%), Gaps = 14/169 (8%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + + + + A L + DA+A + ++ +R R+ G SLS S+ Sbjct: 65 IADFTEDLAELLGAALSIHDALASLAEGETRRRLREFILRLEARVRGGHSLSASMKADPA 124 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 P ++ + G L+ L++L+ R + +K + ++ Sbjct: 125 TPP-----RILVAMTAAGEESGQLAATLSDLAVRFRAEQALKRDLAGQLAYPA---VLVC 176 Query: 135 SLPFCVSTLVYFTSPGYMNVLIND-----PRGHMLLGVAAAFMLIGIMV 178 + + L + P + V + P ++GV A I + Sbjct: 177 LIYLTLVFLAFIVLPQFEIVFADSAIEPPPETQFVIGVGAFLRTYAIWI 225 >gi|78066135|ref|YP_368904.1| Flp pilus assembly protein TadC [Burkholderia sp. 383] gi|77966880|gb|ABB08260.1| Flp pilus assembly protein TadC [Burkholderia sp. 383] Length = 332 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 55/147 (37%), Gaps = 5/147 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQHLGLSLSES 68 + P +D++ GL + ++ V+V + E G + +S Sbjct: 180 ISAELPLLVDMLRLLQGVGLSLDQSIQVVVHDFQTMLPVLSWELAVAQRQFAAGRTREQS 239 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + R+ +++ ++ + GG + E L LR+ + + Q + K Sbjct: 240 LQRLTNSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREGRRATLREQIGRLTVKM 299 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +I +L + L+ PG M VL Sbjct: 300 TGVMIVTLLPAL--LIVTAGPGVMTVL 324 >gi|332535168|ref|ZP_08410975.1| general secretion pathway protein F [Pseudoalteromonas haloplanktis ANT/505] gi|332035387|gb|EGI71887.1| general secretion pathway protein F [Pseudoalteromonas haloplanktis ANT/505] Length = 411 Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 18/135 (13%), Positives = 43/135 (31%), Gaps = 6/135 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 D + +++ LPV AV + Q ++ V G +L++ +S Sbjct: 70 TSDLALITRQLATLIQSALPVEGAVMAVAEQCEKPRLKRMLMSVRSKVVEGYTLADGLSE 129 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + G+L + L L+ R++M++++ + Sbjct: 130 FP-----HVFDDLYRAMVAAGEKSGHLDQVLNRLADYTEQRQHMRSQITQAMVYPIILVV 184 Query: 132 IIGSLPFCVSTLVYF 146 + + V Sbjct: 185 FAIGIVSVLLGTVVP 199 >gi|163801322|ref|ZP_02195221.1| hypothetical protein 1103602000598_AND4_10654 [Vibrio sp. AND4] gi|159174811|gb|EDP59611.1| hypothetical protein AND4_10654 [Vibrio sp. AND4] Length = 298 Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 65/143 (45%), Gaps = 4/143 (2%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE--FRRVIETQHLGLSLSESISRM 72 +F LD++ + ++G+ V A+ + + S + ++ S + + Sbjct: 155 NFTYFLDLLATATKSGMTVELALVAVSEYIGNMSSSLSNYIKIYSNDISNNGFSIAGENL 214 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + L EV F+ V+ + G +++AL LS+ +R+ ++ + + + AK + Sbjct: 215 RKSLDLPEVRDFTAVLENALESGAPVTDALRVLSKEIRNFHFIETEEKIGKVNAKMGIPL 274 Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155 I + F + + +PG +N+L Sbjct: 275 ILFIMFPIIVEI--IAPGVLNLL 295 >gi|225420076|ref|ZP_03762379.1| hypothetical protein CLOSTASPAR_06419 [Clostridium asparagiforme DSM 15981] gi|225041332|gb|EEG51578.1| hypothetical protein CLOSTASPAR_06419 [Clostridium asparagiforme DSM 15981] Length = 397 Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 57/162 (35%), Gaps = 15/162 (9%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 D P + + AG+PVS A++V + D + R+ ET G +LSE+++ Sbjct: 59 SDAIPPFCRQMSTMLGAGVPVSRALSVCGSSTRDRSLGRILARLNETVQKGRTLSEAMAE 118 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M ++ +L G+L +A ++ ++ K+++ Sbjct: 119 M-----NGIFPGLLVHMAAMGELNGSLDRVMAKMADHYSREAKLRKKIRSAMTYPAILLV 173 Query: 132 IIGSLPFCVSTLVYFTS---------PGYMNVLINDPRGHML 164 + + + T V P + L+ + Sbjct: 174 VTLAATAFMLTAVLPRFASLLSGTELPAFTRFLLGTSAFLKI 215 >gi|160872410|ref|ZP_02062542.1| pilus assembly protein PilC [Rickettsiella grylli] gi|159121209|gb|EDP46547.1| pilus assembly protein PilC [Rickettsiella grylli] Length = 374 Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 18/178 (10%), Positives = 56/178 (31%), Gaps = 12/178 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 + + I R ++AG+P+ + ++ + + + +++I G SLSE++ Sbjct: 34 MRELLVFTHQIARLLKAGIPLLSILQLLKSTTKNTSLTHYIQKLIVNLEEGFSLSEALE- 92 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + F + + L ++ +++K+ + Sbjct: 93 ----GNKLYFNQFYCSLIALGERTATLGLMFDRIAVYQEKNMKLRSKITNALVYPLVVLS 148 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG------VAAAFMLIGIMVMRLMI 183 + + + V + + + + + G +V ++I Sbjct: 149 VAILVFIALLMGVVPQFEQFFSEVGAQLPFITRIIIYLSKNIGYISFTFGFLVSMIVI 206 Score = 40.9 bits (94), Expect = 0.079, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 48/129 (37%), Gaps = 5/129 (3%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + ++ AGLP+ DA+ ++ S + V + ++++ L + + Sbjct: 245 TRALSTALAAGLPLVDALQLVADLSGNFVYK--KAILKSCLLIRDGECFYAAFS---HQK 299 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + ++G L E L N + + ++ N A+ ++ +E ++ + Sbjct: 300 LFPSDLLALIKVGEVGHCLVEILNNTADLYEEKINYFAENLSVLLEPILIIFLGLMISCL 359 Query: 140 VSTLVYFTS 148 + + Sbjct: 360 IIAMYLPIF 368 >gi|257793108|ref|YP_003186506.1| hypothetical protein Aaci_3121 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479800|gb|ACV60117.1| hypothetical protein Aaci_3121 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 278 Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 64/180 (35%), Gaps = 5/180 (2%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ ++ D A+++ V AG V + + + P+++ F R + LS+ Sbjct: 98 ERWMVRYEDGVRQAVELGTGIVEAGGTVEEWILQGEREIEGPLQAVFARGAQQVRERLSV 157 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ + P S+ + GG+L ++ ++ K + + + Sbjct: 158 ADWLRYTADTTPSNYWSYVCNGVLSHLDSGGDLVRFFVEVA----RELQVREKYRRVMAQ 213 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + A + +Y ++ L+ +P +L +A ++ R M Sbjct: 214 QRKEATQLLLAMLVSPAALYLMFRRTLDNLMQAEPFTQVLFAIALVGYVVLFWFARRMAR 273 >gi|116050662|ref|YP_790518.1| putative type II secretion system protein [Pseudomonas aeruginosa UCBPP-PA14] gi|115585883|gb|ABJ11898.1| putative type II secretion system protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 395 Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 72/177 (40%), Gaps = 13/177 (7%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQH 60 ++L +R K ++ A+ + + AG+ ++DAV + + S + + Sbjct: 46 RNLGSRRRLK-AEELNMAIHELATMLAAGVSMADAVEAQERGARHPKLISALQAMANGLR 104 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S + ++ + + ++ GNL+ AL + + + + +A++Q Sbjct: 105 QGQSFPVVLESAGL-----DLPRYVYQLVAAGEMTGNLAGALRDCATQMEYERRTRAELQ 159 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + ++ S V+TL F P + N+L + L +A A + IG+ Sbjct: 160 GALIYPA---ILVLSGVLAVATLFVFVVPKFANLLNETAQ---LPWLAWAVLSIGVW 210 >gi|167836788|ref|ZP_02463671.1| type II secretion system protein [Burkholderia thailandensis MSMB43] Length = 267 Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66 +D+ P +D++ GL + ++ V+ + SE G + Sbjct: 113 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTRE 172 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ R+ +++ ++ + GG + E L LR+ + + + + Sbjct: 173 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 232 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154 K + +I +L + + PG + V Sbjct: 233 KMTGVMILTLLPALF--IVTAGPGMLAV 258 >gi|32477853|ref|NP_870847.1| integral membrane protein [Rhodopirellula baltica SH 1] gi|32448410|emb|CAD77925.1| probable integral membrane protein [Rhodopirellula baltica SH 1] Length = 306 Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 57/158 (36%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIET 58 ++ + R + D P A+D+ GL A+ + S R Sbjct: 141 VRASRRARVLQVSRDLPLAMDLWATLSEGGLGFDAALDRWQRTQRPDRVLASACRGFQRD 200 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G+ S + R+ + + ++ F+ + Q+G ++SE L + +R + + Sbjct: 201 LLGGMRRSVAFRRLAGRLDVPPLTRFTAAMIQSEQMGASVSETLRLQAEDVRAE---RRE 257 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 ++ A+ +I + + L + + L+ Sbjct: 258 KSMAFAQSLATKRVIPLVVCFLPGLFVWPLGPFFTQLL 295 >gi|107102197|ref|ZP_01366115.1| hypothetical protein PaerPA_01003248 [Pseudomonas aeruginosa PACS2] Length = 395 Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 72/177 (40%), Gaps = 13/177 (7%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQH 60 ++L +R K ++ A+ + + AG+ ++DAV + + + + + Sbjct: 46 RNLGSRRRLK-AEELNMAIHELATMLAAGVSMADAVEAQERGARHPKLITALQAMANGLR 104 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S + ++ + + ++ GNL+ AL + + + + +A++Q Sbjct: 105 QGQSFPVVLESAGL-----DLPRYVYQLVAAGEMTGNLAGALRDCATQMEYERRTRAELQ 159 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + ++ S V+TL F P + N+L + L +A A + IG+ Sbjct: 160 GALIYPA---ILVLSGVLAVATLFVFVVPKFANLLNETAQ---LPWLAWAVLSIGVW 210 >gi|76789307|ref|YP_328393.1| general secretion pathway protein F [Chlamydia trachomatis A/HAR-13] gi|237804921|ref|YP_002889075.1| general secretion pathway protein F [Chlamydia trachomatis B/TZ1A828/OT] gi|255311389|ref|ZP_05353959.1| general secretion pathway protein F [Chlamydia trachomatis 6276] gi|255317690|ref|ZP_05358936.1| general secretion pathway protein F [Chlamydia trachomatis 6276s] gi|255348951|ref|ZP_05380958.1| general secretion pathway protein F [Chlamydia trachomatis 70] gi|255503490|ref|ZP_05381880.1| general secretion pathway protein F [Chlamydia trachomatis 70s] gi|76167837|gb|AAX50845.1| general secretion pathway protein F [Chlamydia trachomatis A/HAR-13] gi|231273221|emb|CAX10134.1| general secretion pathway protein F [Chlamydia trachomatis B/TZ1A828/OT] gi|296437032|gb|ADH19202.1| general secretion pathway protein F [Chlamydia trachomatis G/11222] Length = 391 Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 24/193 (12%), Positives = 59/193 (30%), Gaps = 15/193 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 ++ + ++ + +V +R+G+ + DA+ + Q + ++E Sbjct: 42 IRKVRERNYRVTTTELVIFTKQLVLLLRSGISLYDALTSLRDQYQGRALAGVLTSLMEAL 101 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SE+++R F + GNL AL N+ ++L +++ + + Sbjct: 102 RSGGVFSEALARFP-----HIFDSFYQNSVRSGESIGNLEGALMNIIKVLEEKEKLSKSL 156 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG---------VAAA 170 A ++ V T + + Sbjct: 157 AAALSYPAILLVFSCAVVVFFLIGVIPTLKETFEDMEMTRLTKAVFSCSTWFCRYKFLVL 216 Query: 171 FMLIGIMVMRLMI 183 IG + ++ Sbjct: 217 LGGIGGAISLRIV 229 >gi|296112335|ref|YP_003626273.1| type IV pilus assembly protein PilC [Moraxella catarrhalis RH4] gi|295920029|gb|ADG60380.1| type IV pilus assembly protein PilC [Moraxella catarrhalis RH4] gi|326569232|gb|EGE19293.1| type IV pilus assembly protein PilC [Moraxella catarrhalis BC7] Length = 419 Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 16/174 (9%), Positives = 58/174 (33%), Gaps = 7/174 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71 +L + + +G+ ++DA+ + ++ + ++ ++ + G + +++I+ Sbjct: 80 NKQILLSLRTLATLLTSGVVLTDALDIAAKTTTNGRLSNKLIQIKQCIEQGENFTQAIAS 139 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + + G L L + + ++++ A A Sbjct: 140 HPEFG------SLALALIDAGEKSGTLDIMLERAAEHAEQQALRQSQLNQALRYPAAIAL 193 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + V + + N+ L ++ + L L++ Sbjct: 194 TSLIVSTVMLLKVVPSFAASFGNMGNELPTITLWVLSLSQWLSANFWQLLLVAI 247 >gi|148262760|ref|YP_001229466.1| general secretion pathway protein F [Geobacter uraniireducens Rf4] gi|146396260|gb|ABQ24893.1| general secretion pathway protein F [Geobacter uraniireducens Rf4] Length = 403 Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 20/174 (11%), Positives = 57/174 (32%), Gaps = 6/174 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + + + +PV +++ + Q +R RV + G SL+++++ Sbjct: 65 ELSLMTRRLATLLGSSVPVYESINTLYDQERPGELRKMLGRVRDRLAEGTSLAKALAAEP 124 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + S + + G L L L+ L D+ +++KV + Sbjct: 125 QI-----FSDSYIGMVSAGEASGALEVVLERLAEFLEDQAAIRSKVITSLAYPILMVVVG 179 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + + V ++ + + ++ +++ F + Sbjct: 180 VVVMLFLLAFVVPKIVTVFEESKATLPLITIILIKVSNLVRKGWWALIILGFAI 233 >gi|326561846|gb|EGE12181.1| type IV pilus assembly protein PilC [Moraxella catarrhalis 7169] gi|326563279|gb|EGE13546.1| type IV pilus assembly protein PilC [Moraxella catarrhalis 46P47B1] gi|326563392|gb|EGE13657.1| type IV pilus assembly protein PilC [Moraxella catarrhalis 12P80B1] gi|326568930|gb|EGE18999.1| type IV pilus assembly protein PilC [Moraxella catarrhalis BC1] gi|326571904|gb|EGE21909.1| type IV pilus assembly protein PilC [Moraxella catarrhalis BC8] gi|326577966|gb|EGE27830.1| type IV pilus assembly protein PilC [Moraxella catarrhalis O35E] Length = 419 Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 16/174 (9%), Positives = 58/174 (33%), Gaps = 7/174 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71 +L + + +G+ ++DA+ + ++ + ++ ++ + G + +++I+ Sbjct: 80 NKQILLSLRTLATLLTSGVVLTDALDIAAKTTTNGRLSNKLIQIKQCIEQGENFTQAIAS 139 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + + G L L + + ++++ A A Sbjct: 140 HPEFG------SLALALIDAGEKSGTLDIMLERAAEHAEQQALRQSQLNQALRYPAAIAL 193 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + V + + N+ L ++ + L L++ Sbjct: 194 TSLIVSTVMLLKVVPSFAASFGNMGNELPTITLWVLSLSQWLSANFWQLLLVAI 247 >gi|225874660|ref|YP_002756119.1| putative type 4 fimbrial assembly protein PilC [Acidobacterium capsulatum ATCC 51196] gi|225793983|gb|ACO34073.1| putative type 4 fimbrial assembly protein PilC [Acidobacterium capsulatum ATCC 51196] Length = 398 Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 7/151 (4%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMPLQ 79 V ++AGLP+ +V ++ +P + + V G S+S + + P Sbjct: 64 QQFVTLIKAGLPILSSVEMLAQSQKNPHFAAQLQNVAARVRTGESISSAFDAQGGFPP-- 121 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 T + + GNL E L R + K+QA + ++ L Sbjct: 122 ----IYTTTLLAGERSGNLEEVLTRYLAFQRISLTFRKKLQASLIYPSMLIVLVFGLFIF 177 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + + V + + + G L +A Sbjct: 178 LISFVVPRFAMLYDQMGSKLPGITLALLAFG 208 >gi|153812902|ref|ZP_01965570.1| hypothetical protein RUMOBE_03309 [Ruminococcus obeum ATCC 29174] gi|149830980|gb|EDM86070.1| hypothetical protein RUMOBE_03309 [Ruminococcus obeum ATCC 29174] Length = 289 Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 54/151 (35%), Gaps = 1/151 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + R + L D P L + V +G+ + DA + E + Sbjct: 137 LQDKLTARRQEILMDLPQVLSKLTLLVNSGMVLRDAWKRTAITGERALYKEMQNTSLEID 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKV 119 G+ +++ ++EV F+++I + L+ L ++S + + K + K Sbjct: 197 NGIMEADAYRNFADRCSVKEVRKFTSLILQNLQKGNEELALFLGDMSTEMWEMKKNEVKQ 256 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150 + ++ + + ++ G Sbjct: 257 KGEKANSRLLLPVFLIFIGILILILVPVMSG 287 >gi|58220036|gb|AAW67546.1| outer membrane secretion protein S [Pseudomonas alcaligenes] Length = 404 Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 23/189 (12%), Positives = 45/189 (23%), Gaps = 16/189 (8%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R D + + A LP+ +A+ QS P + L Sbjct: 59 RRGLSARDLALVTRQLATLISAALPIEEALRAAAAQSRQPRLQSMLLAVR----AKVLEG 114 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + G+L L L+ R+ + K+Q + Sbjct: 115 HSLAKALATYPAAFPELYRATVAAGEHAGHLGPVLEQLADYTEQRQQSRQKIQMALLYPV 174 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR----GHMLL--------GVAAAFMLIG 175 + + V G + L +A ++G Sbjct: 175 ILMLASLGIVGFLLGYVVPDVVRVFVDSGQTLPALTRGLIFLSELVKAWGALAIVLAVLG 234 Query: 176 IMVMRLMIN 184 ++ R + Sbjct: 235 VIGFRRALR 243 Score = 37.8 bits (86), Expect = 0.71, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 45/130 (34%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77 + VR+G+P+ +A+A+ S+ + + G SLS ++ ++ P Sbjct: 273 FASTLAILVRSGVPLVEALAIGAEVVSNLIIRSDVANATQRVREGGSLSRALEASRQFPP 332 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L + L+ +R + + E ++ + Sbjct: 333 M------MLHMIASGERSGELDQMLSRTARNQENDLAATIGLLVGLFEPFMLVFMGAVVL 386 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 387 VIVLAILLPI 396 >gi|15835473|ref|NP_297232.1| general secretion pathway protein F [Chlamydia muridarum Nigg] gi|270285653|ref|ZP_06195047.1| general secretion pathway protein F [Chlamydia muridarum Nigg] gi|270289662|ref|ZP_06195964.1| general secretion pathway protein F [Chlamydia muridarum Weiss] gi|301337049|ref|ZP_07225251.1| general secretion pathway protein F [Chlamydia muridarum MopnTet14] gi|7190885|gb|AAF39655.1| general secretion pathway protein F [Chlamydia muridarum Nigg] Length = 391 Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 19/166 (11%), Positives = 56/166 (33%), Gaps = 6/166 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 ++ + ++ + + +R+G+ + D++A + Q + ++E Sbjct: 42 IRKVRERNYRVPTSELVIFTKQLSLLLRSGVSLYDSLASLRDQYQGRALAGILTSLMEAL 101 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SE++++ F + GNL AL N++++L +++ + + Sbjct: 102 RSGGVFSEALAKYP-----TIFDSFYQNSVRSGESVGNLEGALVNITKVLEEKEKLSKNI 156 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165 A ++ V + + ++ Sbjct: 157 SAALSYPAILLVFSCAVIVFFLVGVIPSLKESFEDIETTGLTKIVF 202 >gi|293192038|ref|ZP_06609362.1| putative bacterial type II secretion system protein F domain protein [Actinomyces odontolyticus F0309] gi|292820386|gb|EFF79375.1| putative bacterial type II secretion system protein F domain protein [Actinomyces odontolyticus F0309] Length = 425 Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 51/181 (28%), Gaps = 14/181 (7%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVI-----------VGQSSDPVRSEFRRVIETQHLG 62 + + + +RAG P S A + V S V E+ R Sbjct: 102 RELSLLVAEVATRLRAGAPTSLAWGLALARIDAGGSVGVDDSYPAVLDEWARAPTRWRSL 161 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + + + LG L++ L + + D + ++ + Sbjct: 162 RRAERAPGVAASRV---SAASVALACRFSHDLGAPLADVLDAIGSAIDDAQALEEARRVA 218 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + SA ++ +LP + G M V G+ R + Sbjct: 219 AAGPLMSARVLAALPLVGIACALALGASPWQFYMGGTVGRMCAFVGGVAWAAGVASCRRI 278 Query: 183 I 183 + Sbjct: 279 L 279 Score = 36.6 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 18/143 (12%), Positives = 41/143 (28%), Gaps = 10/143 (6%) Query: 3 HLIKKRTAKFLDDF--PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 I R + + A D++ ++ G + A+ + S + Sbjct: 276 RRILARCRRVEEGIDGALACDLVASALACGAAIPRALDALADAS---TTEALTWAAASLR 332 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + +++ + + G LA + R + + AK Q Sbjct: 333 LGATWADAWEDTPEWSHPLRD-----ALEASWTSGTAPETLLARSAAWERRSRLVDAKAQ 387 Query: 121 ALSMEAKASAWIIGSLPFCVSTL 143 A + + + +L Sbjct: 388 AEELSVRLVGPLGVFFLPAFLSL 410 >gi|237802999|ref|YP_002888193.1| general secretion pathway protein F [Chlamydia trachomatis B/Jali20/OT] gi|231274233|emb|CAX11027.1| general secretion pathway protein F [Chlamydia trachomatis B/Jali20/OT] Length = 391 Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 24/193 (12%), Positives = 59/193 (30%), Gaps = 15/193 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 ++ + ++ + +V +R+G+ + DA+ + Q + ++E Sbjct: 42 IRKVRERNYRVTTTELVIFTKQLVLLLRSGISLYDALTSLRDQYQGRALAGVLTSLMEAL 101 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SE+++R F + GNL AL N+ ++L +++ + + Sbjct: 102 RSGGVFSEALARFP-----HIFDSFYQNSVRSGESIGNLEGALMNIIKVLEEKEKLSKSL 156 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG---------VAAA 170 A ++ V T + + Sbjct: 157 AAALSYPAILLVFSCAVVVFFLIGVIPTLKETFEDMEMTRLTKAVFSCSTWFCRYKFLVL 216 Query: 171 FMLIGIMVMRLMI 183 IG + ++ Sbjct: 217 LGGIGGAISLRIV 229 >gi|149191273|ref|ZP_01869528.1| type IV pilin biogenesis protein PilC [Vibrio shilonii AK1] gi|148834871|gb|EDL51853.1| type IV pilin biogenesis protein PilC [Vibrio shilonii AK1] Length = 408 Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 17/149 (11%), Positives = 49/149 (32%), Gaps = 6/149 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71 D + + +P+ A+ +I S ++S +V G+ +++++ Sbjct: 67 RKDITLFTRQLATLLTTRVPLVQALKLISESHSKAEMKSVLNQVASRVESGVPIAQALQA 126 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + F + + GN++ L L+ +++KV + Sbjct: 127 LSTH-----FDRFYIDMIATGESSGNIAVTLDRLATYREKHDALQSKVVKAMIYPSMVLI 181 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 + ++ + + T V + Sbjct: 182 VSCAVTYLMLTSVIPEFESMFKGFNANLP 210 >gi|146343149|ref|YP_001208197.1| general secretion pathway protein F [Bradyrhizobium sp. ORS278] gi|146195955|emb|CAL79982.1| General secretion pathway protein F [Bradyrhizobium sp. ORS278] Length = 402 Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 23/183 (12%), Positives = 55/183 (30%), Gaps = 28/183 (15%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + ++AG + DA+ ++ S +R R+ G S +++ + Sbjct: 68 FTRDLALLLKAGARLDDALDLLSNDSDIGRLRPVVARLRAAIMSGESFADAAAAQPLL-- 125 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 S + + G L + L L+ + + K+ ++ + Sbjct: 126 ---FSPMYVALMRVGEASGTLDQVLTALAGERERSEATRRKLTDAMQYPA---FVFLAAI 179 Query: 138 FCVSTLVYFTSPGYMNVL------INDPRGHML-------------LGVAAAFMLIGIMV 178 + + P + VL + G + AA ++ G + Sbjct: 180 GVMLFFLVAVLPNFSAVLRDFGGRADTALGFFMSLSDILRDNAAVITLGCAALLVAGWWL 239 Query: 179 MRL 181 +R Sbjct: 240 LRQ 242 >gi|240145311|ref|ZP_04743912.1| conserved hypothetical protein [Roseburia intestinalis L1-82] gi|257202606|gb|EEV00891.1| conserved hypothetical protein [Roseburia intestinalis L1-82] Length = 309 Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 64/185 (34%), Gaps = 2/185 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + AL II + + +V + + PV++ F + Sbjct: 120 IRLTASHFKKDVSSELETALSIITTAYLRSEDILTSVEENLEYLNPPVKTVFADFVSRIR 179 Query: 61 L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 L L ++ + + + + +L L + L D + + A++ Sbjct: 180 LIDPDLEAALEELKGKIENDVFMEWVDALKSCL-YDRSLKTTLTPIVAKLSDMRIVNAEL 238 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + L E + + L L+YF + + + L++ G ++L V A + + + Sbjct: 239 EYLVFEPRKEFITMVVLAVGNIPLLYFLNQSWYDTLMHTIPGQIMLAVTGAIIFVSTACV 298 Query: 180 RLMIN 184 + Sbjct: 299 IKLTK 303 >gi|258515847|ref|YP_003192069.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM 771] gi|257779552|gb|ACV63446.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM 771] Length = 414 Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 58/153 (37%), Gaps = 6/153 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 L + + AG+ + ++ V+ QS + ++ V G +LS+++ + P Sbjct: 79 LLWQLAALITAGVSIVASLVVLEQQSRNRRLKFILSSVRRDVEAGKALSDAMIQFPGTFP 138 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + T I + G L A+ +++ +R + KV + S+ + + Sbjct: 139 I-----MVTSILKTGETTGLLDTAMERVAKYWEERLELMRKVISSSLYPAIVLLVSLGVI 193 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + + V ++ + + + L + A Sbjct: 194 IFMVSYVLPKLAPFLESMGGEMPWNTRLLIDIA 226 Score = 37.8 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 48/134 (35%), Gaps = 6/134 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + V +G+ V +A+ S+ V+ R+++ G +LS+ + R Y P Sbjct: 282 FAKTLALLVSSGVSVLEALKATRETISNTAVKKVIERMVDRVLRGENLSDPLLRAGNYFP 341 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G++ +L ++ I K ME + G + Sbjct: 342 P-----MVGNMVKVGEETGSVDSSLLMVADIYGKLLQAKIDKMISLMEPILIVVLGGIVG 396 Query: 138 FCVSTLVYFTSPGY 151 F + LV GY Sbjct: 397 FIAAALVGAMVAGY 410 >gi|218782645|ref|YP_002433963.1| type II secretion system protein [Desulfatibacillum alkenivorans AK-01] gi|218764029|gb|ACL06495.1| Type II secretion system protein, PilC [Desulfatibacillum alkenivorans AK-01] Length = 406 Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 19/141 (13%), Positives = 44/141 (31%), Gaps = 6/141 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D +RAG+P+ D V + ++ + + G SL +++ + Sbjct: 66 RDIILFTKQFATMLRAGIPIIDLFKVAESQTENPKLKKVIAVISKDIQEGASLHQAMKKH 125 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 S + + G L + L L I+ + +K ++ + + Sbjct: 126 P-----SVFSPLYLSMMRAGETSGALPQVLERLIYIIDHEEKVKKDIRGAMIYPALVTIV 180 Query: 133 IGSLPFCVSTLVYFTSPGYMN 153 + F + V + Sbjct: 181 LTGAFFLLEIKVVPVFAKMFS 201 >gi|325695694|gb|EGD37593.1| bacterial type II secretion system protein F [Streptococcus sanguinis SK150] Length = 408 Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 19/171 (11%), Positives = 51/171 (29%), Gaps = 4/171 (2%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 L D + + +G+P+++AV ++ Q++ +++ S Sbjct: 57 KKIKLKDISLFCKQMSVMLESGIPLNNAVDILEQQATSKNLKSSLKIVSKSLKEGS---- 112 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + G L E L +S +++ + Sbjct: 113 QLSKAMLDQEGMFPDLLIRMVQAGEKTGKLDEVLEKMSEHYNKELKTSRQIRGAMIYPAV 172 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A++ + + +V + G D + +AA+ + + Sbjct: 173 LAFLAVAAVLALLYIVIPSFSGIFEQSGMDMPLPTRIVLAASNFVRSYWYI 223 Score = 45.9 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ +A+ +++ V E ++ L + Sbjct: 270 FASTLAILTSAGIPLVEAIESAAATTNNAVVIEKMKIANE-----GLQKGERLTGMITAT 324 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G+L L S + K +E + + Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLIKTSDYYEEELETAIKQLLSLLEPAMIIVMGVIIGG 384 Query: 139 CVSTLVYFTS 148 V++++ Sbjct: 385 IVASVMLPMF 394 >gi|327538076|gb|EGF24766.1| type II secretion system protein [Rhodopirellula baltica WH47] Length = 306 Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 57/158 (36%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIET 58 ++ + R + D P A+D+ GL A+ + S R Sbjct: 141 VRASRRARVLQVSRDLPLAMDLWATLSEGGLGFDAALDRWQRTQRPDRVLASACRGFQRD 200 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G+ S + R+ + + ++ F+ + Q+G ++SE L + +R + + Sbjct: 201 LLGGMRRSVAFRRLAGRLDVPPLTRFTAAMIQSEQMGASVSETLRLQAEDVRAE---RRE 257 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 ++ A+ +I + + L + + L+ Sbjct: 258 KSMAFAQSLATKRVIPLVVCFLPGLFVWPLGPFFTQLL 295 >gi|307297359|ref|ZP_07577165.1| Type II secretion system F domain protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306916619|gb|EFN47001.1| Type II secretion system F domain protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 400 Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 51/156 (32%), Gaps = 8/156 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQHLGLSLSESIS 70 + + V +G+ + D++ V+ Q S R RV+ G+S SES+ Sbjct: 61 QKEVSIFSRQLATMVSSGVRIRDSLQVLSTQVLFSRRFRKIISRVVLDIEGGMSFSESLE 120 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + P T + + GG L E+L ++ ++ +V++ Sbjct: 121 KTGVFEP------LFTNLVKAGEAGGVLDESLERVADFYEGMVELQNQVKSAMAYPLFMM 174 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 + +S + +L Sbjct: 175 VFAVGIVGMISFFILPNLISAFGGNYEPEGTMAILL 210 >gi|158314421|ref|YP_001506929.1| integral membrane protein [Frankia sp. EAN1pec] gi|158109826|gb|ABW12023.1| integral membrane protein [Frankia sp. EAN1pec] Length = 302 Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 19/181 (10%), Positives = 55/181 (30%), Gaps = 2/181 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 + R + + ++ A + A+ + +R E + + Sbjct: 91 RAQARHVARTQGIAVWAEQLRDTLAAAAGLEQAILATAATAPAAIRGEIALLAARINRRE 150 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS ++ + + + + LS L L+ R +M +++ Sbjct: 151 RLSPALRGLADDLDDPLADLVIGALILAAEHQARQLSGLLGQLAATARAHVDMLGRIEVG 210 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + ++ + + + ++ + G ++L A G + +R M Sbjct: 211 RARMRTTMRVVVVTSIVFAGGLVIFNRPFLAP-YSTAAGQLVLLAIGAIFAGGFVWLRRM 269 Query: 183 I 183 Sbjct: 270 A 270 >gi|120602837|ref|YP_967237.1| type II secretion system protein [Desulfovibrio vulgaris DP4] gi|120563066|gb|ABM28810.1| type II secretion system protein [Desulfovibrio vulgaris DP4] Length = 408 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 20/159 (12%), Positives = 49/159 (30%), Gaps = 7/159 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + +AG+P++ + V+ Q+ I + + + Sbjct: 67 KELILFTKQFRTLFQAGIPITQLLQVLQNQTEHKRLKA----IAAEMSQAIMGGATLYDA 122 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + S + + G L E + L +L +++ +++ K ++ Sbjct: 123 FRAHPKVFSELYCSMMRAGEASGALGEVMNRLVYLLEHEHKIRSDIKSALRYPK---MVV 179 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 G+L L+ P + ++ L A M Sbjct: 180 GALAVAFFVLLNLVIPKFADIFARAKIELPLPTRIAIGM 218 >gi|221208145|ref|ZP_03581150.1| type IV fimbrial assembly protein PilC [Burkholderia multivorans CGD2] gi|221172048|gb|EEE04490.1| type IV fimbrial assembly protein PilC [Burkholderia multivorans CGD2] Length = 403 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/145 (9%), Positives = 39/145 (26%), Gaps = 6/145 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + ++AGLPV+ A+ ++ ++ + + G + +++ Sbjct: 64 RDVTRFTRQLASLLQAGLPVAPALDMLSRTRTHGGLPRIAAGLAREIVDGQRFAAALALY 123 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L ++ K++ Sbjct: 124 PSQFG-----TLYRQLIEVGEASGALGTVLMRIAEHRERADAQWRKLRTALAYPAVVILF 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIN 157 ++ + V T + Sbjct: 179 ALAIAAALMVWVVPTFRQIFDGFGT 203 Score = 35.9 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 41/130 (31%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P++DA A + + ++ G L++++ + Sbjct: 273 WCRSLATLLGAGVPLADAFATLERTAGHPVFERASTQIAARVLRGARLADAMQASGCFPD 332 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ G L LA+++ + + + + A E + + Sbjct: 333 DIVQP------IAVAEETGALDTMLADIATLSEHQLDARIDTLAALGEPLIVIVLGALVG 386 Query: 138 FCVSTLVYFT 147 V + Sbjct: 387 GLVIAMYLPI 396 >gi|310765062|gb|ADP10012.1| General secretion pathway protein F (Pectic enzymes secretion protein OutF) [Erwinia sp. Ejp617] Length = 401 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 24/179 (13%), Positives = 50/179 (27%), Gaps = 20/179 (11%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + V A LP+ A+ + Q++ P I + L + + Sbjct: 67 MTRQLATLVGAALPLEQALLALERQTTKPAGRTMLHAIRQKV----LEGASLADAVGLYP 122 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L L L+ + +K+K+ + + S+ Sbjct: 123 ATFPPLYQAMIAAGEASGKLDNVLEQLADYSEKTQQIKSKLTQAMIYPLLLTLVAISVIT 182 Query: 139 CVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVMRL 181 + T V + + I G +L V I +++R Sbjct: 183 ILLTAVVPSVVEQFVHMKQALPLSTRLLMSISEITRAIGLPVLLVILLAGFIARVMLRR 241 >gi|282853288|ref|ZP_06262625.1| type II secretion system F domain protein [Propionibacterium acnes J139] gi|282582741|gb|EFB88121.1| type II secretion system F domain protein [Propionibacterium acnes J139] Length = 249 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 56/148 (37%), Gaps = 5/148 (3%) Query: 7 KRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +R + P AL ++ ++ AGLP+ AV + P + RR+ + G+ Sbjct: 101 RRMEQHRAAQLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVPD 160 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S + + + ++ + +S G +SE L+ + L+ KA+ +A Sbjct: 161 SRAWNDLA---SVEVWRDPAQDVSRAVNSGEGISELLSAHAAQLQVAAAEKAEKKARKAG 217 Query: 126 AK-ASAWIIGSLPFCVSTLVYFTSPGYM 152 + LP + V G + Sbjct: 218 VDAIGPLVCCHLPAFLLVGVVPIIAGMV 245 >gi|258510584|ref|YP_003184018.1| hypothetical protein Aaci_0581 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477310|gb|ACV57629.1| hypothetical protein Aaci_0581 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 278 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 64/180 (35%), Gaps = 5/180 (2%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ ++ D A+++ V AG V + + + P+++ F R + LS+ Sbjct: 98 ERWMVRYEDGVRQAVELGTGIVEAGGTVEEWILQGEREIEGPLQAVFARGAQQVRERLSV 157 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ + P S+ + GG+L ++ ++ K + + + Sbjct: 158 ADWLRYTADTTPSNYWSYVCNGVLSHLDSGGDLVRFFVEVA----RELQVREKYRRVMAQ 213 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + A + +Y ++ L+ +P +L VA ++ R M Sbjct: 214 QRKEATQLLLAMLVSPAALYLMFRRTLDNLMQAEPFTQVLFAVALVGYVVLFWFARRMAR 273 >gi|225022081|ref|ZP_03711273.1| hypothetical protein CORMATOL_02114 [Corynebacterium matruchotii ATCC 33806] gi|224945202|gb|EEG26411.1| hypothetical protein CORMATOL_02114 [Corynebacterium matruchotii ATCC 33806] Length = 290 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 58/168 (34%), Gaps = 5/168 (2%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 L +IV ++AG + A+ + + +R E G S + Sbjct: 99 ATMLTLIVGELQAGATMGAALTACLPTLTEPELRREITVAARRCATGGS----AGAELEQ 154 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P+ +S + G L+ L N+ + + +++ +A A A+A ++ Sbjct: 155 SPILALSLMGHAWRIAETNGMALAGVLDNIRHRIDHQNRHESRTKAALQGANATAIVLAL 214 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 LP + + L G ++L + GI+ +I Sbjct: 215 LPLLGMVMGHAIGVNVPAFLTGGGVGGLILIAGVSAECAGILWSDHII 262 >gi|189349295|ref|YP_001944923.1| type IV pilus assembly protein [Burkholderia multivorans ATCC 17616] gi|189333317|dbj|BAG42387.1| type IV pilus assembly protein [Burkholderia multivorans ATCC 17616] Length = 403 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/145 (9%), Positives = 40/145 (27%), Gaps = 6/145 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + ++AGLP++ A+ ++ ++ + + G + +++ Sbjct: 64 RDVTRFTRQLASLLQAGLPLAPALDMLSRTRTHGGLPRIAAGLAREIVDGQRFAAALALY 123 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L ++ K++A Sbjct: 124 PSQFG-----TLYRQLIEVGEASGALGTVLMRIAEHRERADAQWRKLRAALAYPAVVILF 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIN 157 ++ + V T + Sbjct: 179 ALAIAAALMVWVVPTFRQIFDGFGT 203 Score = 35.1 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 42/130 (32%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P++DA A + + V ++ G L++++ + Sbjct: 273 WCRSLATLLGAGVPLADAFATLERTAGHHVFERASTQIAARVLRGARLADAMQASGCFPD 332 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ G L LA+++ + + + + A E + + Sbjct: 333 DIVQP------IAVAEETGALDTMLADIATLSEHQLDARIDTLAALGEPLIVIVLGALVG 386 Query: 138 FCVSTLVYFT 147 V + Sbjct: 387 GLVIAMYLPI 396 >gi|89895157|ref|YP_518644.1| hypothetical protein DSY2411 [Desulfitobacterium hafniense Y51] gi|89334605|dbj|BAE84200.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 401 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 20/157 (12%), Positives = 47/157 (29%), Gaps = 7/157 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + VR+G + + V+ Q D + +I Sbjct: 62 ESISAFCSQLAMMVRSGANLVRGLEVLKLQLDDKQLQKVLEIIIQGVSRGD----SLSQA 117 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + GNL L +++ ++ K+Q+ S+ ++ Sbjct: 118 MRDCKGALPDLLINLVAVGEESGNLESVLTSMAEYYDRENFIRKKIQSASVYPA---ILL 174 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 L + + F P M +L + + L+ Sbjct: 175 MVLIGIIVFFMNFLLPEIMGMLTENGQTLPLITQMII 211 >gi|288572882|ref|ZP_06391239.1| type II secretion system protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568623|gb|EFC90180.1| type II secretion system protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 383 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 56/160 (35%), Gaps = 8/160 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + ++AGLP+S+A+ ++ Q + + + + G LS S+ Sbjct: 65 FCRSLSTYLKAGLPLSEALKLLEKQGGKRLGLLYGSLRQAVEGGRRLSSSLRDAG----- 119 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + GG L E L + + +++ ++Q + + Sbjct: 120 -CFDENLCSMVESGERGGTLDEVLTQAVGLFSMQASLRRRLQTAMTYPAIMMVVGLGVVA 178 Query: 139 CVSTLVYFTSPGYMNVLINDP--RGHMLLGVAAAFMLIGI 176 + T V + + +L+G++ AF +G Sbjct: 179 FLMTYVVPKVAVLFSDMGRALPIPTRILMGLSRAFQAMGF 218 Score = 34.7 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 8/130 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + +R+G+P+ A+ + DP + + + + GL +++ + Sbjct: 255 VCSNLGSLLRSGIPLVQALRMSA--VLDPRKDRWMAIADQVKGGLRFEKALEK------D 306 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 ++GG+L+ AL +++ DR A +E ++ + F Sbjct: 307 GTFDEDLVYFVRIGEIGGDLAGALEQIAQTRWDRARASMDRMANLIEPVMVLFLGLVVGF 366 Query: 139 CVSTLVYFTS 148 V ++ Sbjct: 367 VVVAILLPIF 376 >gi|3978480|gb|AAC83357.1| outer membrane secretion protein S [Pseudomonas alcaligenes] Length = 404 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 23/189 (12%), Positives = 46/189 (24%), Gaps = 16/189 (8%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R D + + A LP+ +A+ QS P + L Sbjct: 59 RRGLSARDLALVTRQLATLIGAALPIEEALRAAAAQSRQPRIQSMLLAVR----AKVLEG 114 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + G+L+ L L+ R+ + K+Q + Sbjct: 115 HSLAKALASYPAAFPELYRATVAAGEHAGHLAPVLEQLADYTEQRQQSRQKIQMALLYPV 174 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR----GHMLL--------GVAAAFMLIG 175 + + V G + L +A ++G Sbjct: 175 ILMLASLGIVGFLLGYVVPDVVRVFVDSGQTLPALTRGLIFLSELVKSWGALAIVLAVLG 234 Query: 176 IMVMRLMIN 184 ++ R + Sbjct: 235 VLAFRRALR 243 Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 45/130 (34%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77 + VR+G+P+ +A+A+ S+ + + G SLS ++ ++ P Sbjct: 273 FASTLAILVRSGVPLVEALAIGAEVVSNLIIRSDVANATQRVREGGSLSRALEASRQFPP 332 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L + LA +R + + E ++ + Sbjct: 333 M------MLHMIASGERSGELDQMLARTARNQENDLAATIGLLVGLFEPFMLVFMGAVVL 386 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 387 VIVLAILLPI 396 >gi|322384399|ref|ZP_08058085.1| hypothetical protein PL1_0931 [Paenibacillus larvae subsp. larvae B-3650] gi|321150757|gb|EFX44217.1| hypothetical protein PL1_0931 [Paenibacillus larvae subsp. larvae B-3650] Length = 223 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 71/159 (44%), Gaps = 8/159 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI----VGQSSDPVRSEFRRVI 56 + +KK+ L + P L+ I+ V AG V + + P+++E + Sbjct: 67 LDQKLKKKKHSILIELPEFLNKIILLVDAGETVQASFIRCIDDRAEKPLSPLQAELIKCK 126 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTV-ISVQSQLGGNLSEALANLSRILRDRKNM 115 + +SL++S+ + R +QE+S F+T + + G +L+ AL NLS+ L +R+ Sbjct: 127 RELLMNVSLNKSLGELTRRCSMQEISMFTTTVLLNYKRGGHDLTVALRNLSKDLWERRKA 186 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 +++ +K + + +V +P M + Sbjct: 187 VSRILGEEASSKL---VFPMALIFLIVIVIVAAPAMMMM 222 >gi|149177768|ref|ZP_01856368.1| General secretion pathway protein F [Planctomyces maris DSM 8797] gi|148843418|gb|EDL57781.1| General secretion pathway protein F [Planctomyces maris DSM 8797] Length = 362 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 52/171 (30%), Gaps = 18/171 (10%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 I+ V+AG+P+ + + + D + + G +L E+++ P Sbjct: 29 IISLVQAGIPLELGLREMGNELPDRLGRITADLATRMERGSTLPEAMAAEGACFP----- 83 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 VI G L+ AL +S + +++ ++ + + L Sbjct: 84 RVYRVIVEAGIKSGKLTVALEEMSNYAWELFHLRRQIGMAMVYPLIVFSLAYGLFMIFLF 143 Query: 143 LVYFTSPGYMNVL-------------INDPRGHMLLGVAAAFMLIGIMVMR 180 V ++ + + + L I+ MR Sbjct: 144 EVLSRFNAAYDIFRLSESKPLQLLNSMQSTVVYWGMVPPLVLFLFAILWMR 194 >gi|256810062|ref|YP_003127431.1| Type II secretion system F domain protein [Methanocaldococcus fervens AG86] gi|256793262|gb|ACV23931.1| Type II secretion system F domain protein [Methanocaldococcus fervens AG86] Length = 576 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 23/183 (12%), Positives = 67/183 (36%), Gaps = 9/183 (4%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 + +P L+ + +VR+G+ + A+ V + P+ +++ G ++E Sbjct: 371 NQKEKYYPIFLNDLTMAVRSGMDIIRAMQVCARTNYGPLTKIVKKMAVQMSWGRPINEVF 430 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + + + ++++ + GG++ + L +++ MK ++ + Sbjct: 431 ADLEKTEKSLIAKRIASILKECAVSGGDIKDILTSVTVHAYRLSEMKKEISSRQFIYVVV 490 Query: 130 AWIIGSLPFCV-STLVYFTSPGYMNV-------LINDPRGHMLLGVAAAF-MLIGIMVMR 180 ++ L +V+ P + + +L + +GI+ R Sbjct: 491 IYLTFFLYIGTSYIMVHSLLPTLLKNVQGLSVDFYRNYLFQGILIYSIFSGASLGILTER 550 Query: 181 LMI 183 +I Sbjct: 551 SII 553 >gi|255658143|ref|ZP_05403552.1| putative pilus assembly protein PilC [Mitsuokella multacida DSM 20544] gi|260849450|gb|EEX69457.1| putative pilus assembly protein PilC [Mitsuokella multacida DSM 20544] Length = 408 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 55/156 (35%), Gaps = 6/156 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 L + ++AG+PV A+ ++ + P +S + +++ G L E +++ + Sbjct: 74 FLRQMAAMMQAGMPVHQALEILSRSDGNPPYQSFLQDLLKGIMAGHPLHEMLAQHPQL-- 131 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 S + + G+L++ A L+ R + +++ + + Sbjct: 132 ---FSASLCGLVRAGEASGSLTQIFAQLADFEEHRYEAREALKSALLYPVILLVVAVVSL 188 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 ++ V + L + L + + Sbjct: 189 VLMTVFVLPAFAAMLQDLRAELPWTTKLLLTLMAFV 224 >gi|307352385|ref|YP_003893436.1| type II secretion system F domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307155618|gb|ADN34998.1| Type II secretion system F domain protein [Methanoplanus petrolearius DSM 11571] Length = 646 Score = 51.7 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 62/150 (41%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +++ P+ L+ + R GL ++ A+ V+V + + E RR+ G S+ Sbjct: 420 RRKLKSIESSIPDFLERLSGINRVGLTIAGAINVLVKANLGLISYEIRRIKRDLEWGASV 479 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++ R + ++ T+I+ S++ G++ E L S R + +K + Q Sbjct: 480 NDALIRFEERVNTAAIARTVTLITKASEMTGDIGEVLGIASADARMSETLKKERQGEMFI 539 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ + V ++ + L Sbjct: 540 YTVIIYLAFFVFIFVVAVLNTNFLEILEQL 569 >gi|254241103|ref|ZP_04934425.1| hypothetical protein PA2G_01790 [Pseudomonas aeruginosa 2192] gi|126194481|gb|EAZ58544.1| hypothetical protein PA2G_01790 [Pseudomonas aeruginosa 2192] Length = 395 Score = 51.7 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 72/177 (40%), Gaps = 13/177 (7%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQH 60 ++L +R K ++ A+ + + AG+ ++DAV + + + + + Sbjct: 46 RNLGSRRRLK-AEELNMAIHELATMLAAGVSMADAVEAQERGARHPKLITALQAMANGLR 104 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S + ++ + + ++ GNL+ AL + + + + +A++Q Sbjct: 105 QGQSFPVVLESAGL-----DLPRYVYQLVAAGEMTGNLAGALRDCATQMEYERRTRAELQ 159 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + ++ S V+TL F P + N+L + L +A A + IG+ Sbjct: 160 GALIYPA---ILVLSGVLAVATLFVFVVPKFANLLNETAQ---LPWLAWAVLSIGVW 210 >gi|218891163|ref|YP_002440029.1| putative type II secretion system protein [Pseudomonas aeruginosa LESB58] gi|254235656|ref|ZP_04928979.1| hypothetical protein PACG_01590 [Pseudomonas aeruginosa C3719] gi|126167587|gb|EAZ53098.1| hypothetical protein PACG_01590 [Pseudomonas aeruginosa C3719] gi|218771388|emb|CAW27155.1| probable type II secretion system protein [Pseudomonas aeruginosa LESB58] Length = 395 Score = 51.7 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 72/177 (40%), Gaps = 13/177 (7%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQH 60 ++L +R K ++ A+ + + AG+ ++DAV + + + + + Sbjct: 46 RNLGSRRRLK-AEELNMAIHELATMLAAGVSMADAVEAQERGARHPKLITALQAMANGLR 104 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S + ++ + + ++ GNL+ AL + + + + +A++Q Sbjct: 105 QGQSFPVVLESAGL-----DLPRYVYQLVAAGEMTGNLAGALRDCATQMEYERRTRAELQ 159 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + ++ S V+TL F P + N+L + L +A A + IG+ Sbjct: 160 GALIYPA---ILVLSGVLAVATLFVFVVPKFANLLNETAQ---LPWLAWAVLSIGVW 210 >gi|326576496|gb|EGE26404.1| type IV pilus assembly protein PilC [Moraxella catarrhalis CO72] Length = 419 Score = 51.7 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 16/174 (9%), Positives = 58/174 (33%), Gaps = 7/174 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71 +L + + +G+ ++DA+ + ++ + ++ ++ + G + +++I+ Sbjct: 80 NKQILLSLRTLATLLTSGVVLTDALDIAAKTTTNGRLSNKLIQIKQCIEQGENFTQAIAS 139 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + + G L L + + ++++ A A Sbjct: 140 HPEFG------SLALALIDAGEKSGTLDIMLERAAEHAEQQALRQSQLNQALRYPAAIAL 193 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + V + + N+ L ++ + L L++ Sbjct: 194 TSLIVSTVMLLKVVPSFAASFGNMGNELPTITLWVLSLSQWLSANFWQLLLVAI 247 >gi|294793881|ref|ZP_06759018.1| putative bacterial type II secretion system protein F domain protein [Veillonella sp. 3_1_44] gi|294455451|gb|EFG23823.1| putative bacterial type II secretion system protein F domain protein [Veillonella sp. 3_1_44] Length = 391 Score = 51.7 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 20/159 (12%), Positives = 52/159 (32%), Gaps = 13/159 (8%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + + +G+P+ A+ ++ + + IE + + + Sbjct: 60 DVTYQLGLLIESGVPLRRALQLLCQGKRGLLYTALYESIERGQT----------LSQALR 109 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + + G L E+L +SR + +K KV + +++ + Sbjct: 110 SEGCPPIALALLESGEAAGTLGESLQYISRHYDWERQLKQKVMSAISYPL---FLLLMMN 166 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + F P + V L+ A + G+ Sbjct: 167 IFFLVTILFIIPSFEQVFTTMHITLPLMTRALFALGQGL 205 >gi|289192868|ref|YP_003458809.1| Type II secretion system F domain protein [Methanocaldococcus sp. FS406-22] gi|288939318|gb|ADC70073.1| Type II secretion system F domain protein [Methanocaldococcus sp. FS406-22] Length = 299 Score = 51.7 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 66/143 (46%), Gaps = 1/143 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L + + ++ P AL I++ ++ +G +++A+ +V + V FR+V+ Sbjct: 75 LYENKIETLENNIPQALYIMILALESGRSINEALLEVVKSNIKEVSDIFRKVLYLMENQK 134 Query: 64 -SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S ES++ + + + + ++ + GG+L+++L L++ L D K K ++ ++ Sbjct: 135 LSFEESMTIVSNLYDSKVLRMLARIMIENRKYGGDLADSLKILAKTLEDFKMYKKQLLSV 194 Query: 123 SMEAKASAWIIGSLPFCVSTLVY 145 + A +II + Sbjct: 195 TASGLAIGFIILCGVIPAVAALL 217 >gi|319944024|ref|ZP_08018304.1| exopolyphosphatase [Lautropia mirabilis ATCC 51599] gi|319742785|gb|EFV95192.1| exopolyphosphatase [Lautropia mirabilis ATCC 51599] Length = 402 Score = 51.7 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 57/159 (35%), Gaps = 9/159 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISR 71 D + + A LP+ A+ +V Q+ E F V G +L+ ++++ Sbjct: 62 DADLALCTRQLSSLLTARLPLEKALNAVVEQAESARVRERFAAVRSDVVSGQTLTAAMAK 121 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 R + + + G+L++ ++ L+ + +R + +KV+ A Sbjct: 122 FPR-----DFPDTYRALISAGEQSGDLAQVMSRLAAYVENRTQLVSKVKMAFTYPIIVAV 176 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + + + + P + V + LL + Sbjct: 177 VAVLVIIALL---TYVVPQVVQVFNQTRQDLPLLTLILI 212 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 36/130 (27%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + +G+P+ A+ ++ E R + G L+ ++ P Sbjct: 271 FASTLAILTASGVPLIRALEAGADTLNNTAMKAEVREALGRVREGAPLARALGAGKTLPP 330 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + G L + L + L K +E G + Sbjct: 331 ------LLIHMTASGEATGELPQMLERAAETLSQEVERKTLTMTTLLEPILILITGGIVL 384 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 385 MIVLAVLLPI 394 >gi|148252840|ref|YP_001237425.1| general secretion pathway protein F [Bradyrhizobium sp. BTAi1] gi|146405013|gb|ABQ33519.1| General secretion pathway protein F [Bradyrhizobium sp. BTAi1] Length = 403 Score = 51.7 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 21/182 (11%), Positives = 54/182 (29%), Gaps = 27/182 (14%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + ++AG + DA+ ++ G S +R R+ G S +++ + R Sbjct: 69 FTRDLALLLKAGARLDDALELLSGDSEVGRLRPVVARLRTAIMAGESFADAAAAQPRLFS 128 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G L L L+ + + K+ ++ + Sbjct: 129 P-----MYVALMRVGEASGTLDHVLTALAGERERSEATRRKLTDAMQYPA---FVFLAAI 180 Query: 138 FCVSTLVYFTSPGYMNVL------INDPRGHML------------LGVAAAFMLIGIMVM 179 + + P + VL + G + + + A ++ + + Sbjct: 181 GVMLFFLVAVLPNFSAVLRDFGGRADTALGFFMSLSDIVRANAAAITLGCAMLIAAVWWL 240 Query: 180 RL 181 Sbjct: 241 LR 242 >gi|161525988|ref|YP_001581000.1| type II secretion system protein [Burkholderia multivorans ATCC 17616] gi|160343417|gb|ABX16503.1| type II secretion system protein [Burkholderia multivorans ATCC 17616] Length = 405 Score = 51.7 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 14/145 (9%), Positives = 40/145 (27%), Gaps = 6/145 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + ++AGLP++ A+ ++ ++ + + G + +++ Sbjct: 66 RDVTRFTRQLASLLQAGLPLAPALDMLSRTRTHGGLPRIAAGLAREIVDGQRFAAALALY 125 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G L L ++ K++A Sbjct: 126 PSQFG-----TLYRQLIEVGEASGALGTVLMRIAEHRERADAQWRKLRAALAYPAVVILF 180 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIN 157 ++ + V T + Sbjct: 181 ALAIAAALMVWVVPTFRQIFDGFGT 205 Score = 34.7 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 42/130 (32%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P++DA A + + V ++ G L++++ + Sbjct: 275 WCRSLATLLGAGVPLADAFATLERTAGHHVFERASTQIAARVLRGARLADAMQASGCFPD 334 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ G L LA+++ + + + + A E + + Sbjct: 335 DIVQP------IAVAEETGALDTMLADIATLSEHQLDARIDTLAALGEPLIVIVLGALVG 388 Query: 138 FCVSTLVYFT 147 V + Sbjct: 389 GLVIAMYLPI 398 >gi|23308787|ref|NP_599553.2| hypothetical protein NCgl0296 [Corynebacterium glutamicum ATCC 13032] gi|62389199|ref|YP_224601.1| membrane protein [Corynebacterium glutamicum ATCC 13032] gi|41324532|emb|CAF18872.1| membrane protein [Corynebacterium glutamicum ATCC 13032] Length = 258 Score = 51.7 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 60/183 (32%), Gaps = 7/183 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--PVRSEFRRVIETQH 60 H +RT + + L + ++RAG+ + DA+ + ++ + + Sbjct: 75 HAAAQRTKQ-SLQLASFLSLCAGNLRAGVTMVDAMDYALDNTTPDKFLSPTLQTAARQAR 133 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S + ++ + + G L + + + ++ + Sbjct: 134 SGGSGPRVLIDASL----PDLQRLGHLWETSERHGIPLVALIDQMRSRISSKQRHGESTR 189 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A +A+A I+ LP + + +L G LL + G ++ Sbjct: 190 AALQGPQATAVILTVLPLAGMLMGTAMGANPLGLLTGGGIGGFLLVIGVGLDAAGFVLTH 249 Query: 181 LMI 183 ++ Sbjct: 250 KIL 252 >gi|256396008|ref|YP_003117572.1| integral membrane protein [Catenulispora acidiphila DSM 44928] gi|256362234|gb|ACU75731.1| putative integral membrane protein [Catenulispora acidiphila DSM 44928] Length = 290 Score = 51.7 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 17/172 (9%), Positives = 59/172 (34%), Gaps = 2/172 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + +++ + + + AV + + + + ++++ + Sbjct: 104 EAVAVWAEMLRDVLSSAAGLEQAVLASTTVAPEAIAGPLAALGSDLRARRPFADAMRALA 163 Query: 74 RYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + NL+E L L+ R + ++ +V A + + S Sbjct: 164 AQLGDATADQVIVSLIHAQKFQAKNLAELLGELAAAARAQVSLAVRVHAERAKHRTSQRA 223 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 I + ++ + P ++ + G M++ V A + +++++ Sbjct: 224 ITVIFTLMALGLCVFYPKFLRP-YDTVGGQMVMAVVVAMFAGALCWIQIILR 274 >gi|254284153|ref|ZP_04959121.1| type II secretion system protein [gamma proteobacterium NOR51-B] gi|219680356|gb|EED36705.1| type II secretion system protein [gamma proteobacterium NOR51-B] Length = 397 Score = 51.7 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 25/174 (14%), Positives = 56/174 (32%), Gaps = 8/174 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71 + + + +RAGL + A+ V++ +R+ V+++ G +LS ++ Sbjct: 57 RQEILSMTSELSTLLRAGLSLDRALKVLIDMDGQPRMRAVISEVLKSVKGGKALSIALQP 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 F + + G LS L L L K + V + + Sbjct: 117 FEASFG-----TFYLSMVRAGEASGQLSSVLDRLVEHLESAKTTRDSVISALIYPAILLV 171 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVMRLMI 183 + + V + + P ++G A G ++ ++ Sbjct: 172 VAVISIVVMLGFVVPQFETLFADMGDALPPMTKAVVGAAEFIKAWGFALLIVIA 225 >gi|254447703|ref|ZP_05061169.1| general secretion pathway protein F [gamma proteobacterium HTCC5015] gi|198263046|gb|EDY87325.1| general secretion pathway protein F [gamma proteobacterium HTCC5015] Length = 383 Score = 51.7 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 21/163 (12%), Positives = 60/163 (36%), Gaps = 6/163 (3%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSE 67 ++ +P + + + AG+P+++A+ + ++ + + G LS+ Sbjct: 52 RRQWRQSWPLVVRQLRQLSAAGVPLAEAMDALSQEAEPVAWAQLLQDLARDLSAGQRLSQ 111 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +++R ++P + + + G L L L++IL R+ +++ Sbjct: 112 ALARFEEHLPEPSM-----SLIQAGENSGTLERQLDTLAQILEWREARRSEAINALFYPA 166 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 +A + + + ++ L D + A + Sbjct: 167 VAALATLAAAGFLLLYLVPKLAPFLRELGVDLPFYSRFLFAFS 209 >gi|238019095|ref|ZP_04599521.1| hypothetical protein VEIDISOL_00957 [Veillonella dispar ATCC 17748] gi|237864350|gb|EEP65640.1| hypothetical protein VEIDISOL_00957 [Veillonella dispar ATCC 17748] Length = 391 Score = 51.7 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 17/159 (10%), Positives = 52/159 (32%), Gaps = 13/159 (8%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + + +G+P+ A+ ++ + + IE + + + Sbjct: 60 DVTYQLGLLIESGVPLRRALQLLCQGKRGLLYTALYESIERGQT----------LSQALR 109 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + + G L E+L +SR + ++ KV + +++ + Sbjct: 110 SESCPAIALALLESGEAAGTLGESLQYISRHYDWERQLRQKVISAISYPL---FLLVLMN 166 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + F P + V ++ + + G+ Sbjct: 167 IFFLVTILFIIPSFEKVFTTMHITLPVMTRSLFALGQGL 205 >gi|237741036|ref|ZP_04571517.1| general secretion pathway protein F [Fusobacterium sp. 4_1_13] gi|229431080|gb|EEO41292.1| general secretion pathway protein F [Fusobacterium sp. 4_1_13] Length = 346 Score = 51.7 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 66/170 (38%), Gaps = 13/170 (7%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGL 63 +K + K L + + +++GL + A+ +I+ + D E +++ + G Sbjct: 1 MKNKKEKIL----FFTNELAIMLKSGLTFTTAIEIILKEEKDKNFKEVLKKIHKNLIAGK 56 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S+ ES R + ++ G+++E L ++S+ L + K+ + Sbjct: 57 SIFESFKNFDRIFGN-----TYLYMLKIGEVNGSIAERLEDISKSLEFDLANQKKLGGIL 111 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + +I V+ L+ F P ++ + + L+ F+ Sbjct: 112 VYPI---VVISLTFIIVTFLLTFILPDFITIFEENQVELPLITKILLFIS 158 >gi|227494419|ref|ZP_03924735.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436] gi|226832153|gb|EEH64536.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436] Length = 351 Score = 51.7 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 18/157 (11%), Positives = 46/157 (29%), Gaps = 18/157 (11%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 +R G+ V A V +E S + ++ + Sbjct: 63 LRCGMSVPQAWEQACEDLQVGVDAEEVLNQPEFAQVASSIRAAGKVSAEIG--------- 113 Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 L++AL + L + + ++ +A+ ++ +LP L + Sbjct: 114 ---------VGLADALEAIVGSLEEAEENAKSLEVAFASTQATVRLLAALPAVGLGLAWL 164 Query: 147 TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + G ++ + G + +R ++ Sbjct: 165 LGADLPAFITGTFWGWLVAVAGGGLWVAGFVWVRRLV 201 >gi|167571329|ref|ZP_02364203.1| type IV pilus biogenesis protein PilC [Burkholderia oklahomensis C6786] Length = 405 Score = 51.7 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 18/158 (11%), Positives = 43/158 (27%), Gaps = 6/158 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRM 72 D + + AGL ++ ++ ++ + + + G S ++ R Sbjct: 66 RDVTRFTRQLAGLLHAGLALAPSLELLAQATQRSEMPRIAAGLAREIIAGRQFSAALRRY 125 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R + + G L++ LA L+ A+V+ A Sbjct: 126 PRQFDP-----LFCQLVAVGETAGALAKVLARLADDRERAAAQHARVRGALAYPVAVLLF 180 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 ++ + V T + + Sbjct: 181 ALAITAALLIWVVPTFEQIFAGFGAALPAPTRFILTLS 218 >gi|313498630|gb|ADR59996.1| Type II secretion system protein [Pseudomonas putida BIRD-1] Length = 396 Score = 51.7 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 65/179 (36%), Gaps = 13/179 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 ++ + +R A F D + + AGLP+ DA+ + +S R ++ Sbjct: 47 LRGMAWRREAAF--DLVLFSQELSTLLNAGLPLIDALESLAEKSPAATARKVLAELVRQL 104 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + G SLS+++ + R P + S+ G L +AL + ++ K+ Sbjct: 105 YEGRSLSQALGQQPRVFPP-----LYVALVQSSERTGALGDALTRYISYRQRLDLVRQKL 159 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 S+ + G + + V + G L ++ M +G+ + Sbjct: 160 VGASVYPLLLLLVGGGVVLFLLGYVVPRFSQVFEGM-----GTELPWLSRVLMQVGLFL 213 >gi|239629080|ref|ZP_04672111.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519226|gb|EEQ59092.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 418 Score = 51.7 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 47/162 (29%), Gaps = 11/162 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV----------GQSSDPVRS 50 +K KR + L D+ L ++ + AG+ + A + Q Sbjct: 256 VKKDENKRKHQLLLDYSEVLSRLIIFLGAGMSIRTAWDKVAFDYQKLVDDGKQKPRYAYQ 315 Query: 51 EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQS-QLGGNLSEALANLSRIL 109 E G+ + R LQ+ S+++ NL + L Sbjct: 316 EMYETSCQMRGGVPEGRAFMDFGRRCGLQQYMKLSSLLEQNRKNGSKNLRDTLKVEMAEA 375 Query: 110 RDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 +++ +A+ K + L + + + Sbjct: 376 FEQRKHQARRLGEEAGTKLLLPLFMMLSVVMVVIAVPALMEF 417 >gi|28871970|ref|NP_794589.1| hypothetical protein PSPTO_4855 [Pseudomonas syringae pv. tomato str. DC3000] gi|213968012|ref|ZP_03396158.1| membrane protein [Pseudomonas syringae pv. tomato T1] gi|301383672|ref|ZP_07232090.1| hypothetical protein PsyrptM_13608 [Pseudomonas syringae pv. tomato Max13] gi|302059959|ref|ZP_07251500.1| hypothetical protein PsyrptK_08205 [Pseudomonas syringae pv. tomato K40] gi|302131625|ref|ZP_07257615.1| hypothetical protein PsyrptN_09542 [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28855223|gb|AAO58284.1| membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000] gi|213927355|gb|EEB60904.1| membrane protein [Pseudomonas syringae pv. tomato T1] gi|331014704|gb|EGH94760.1| hypothetical protein PLA106_02330 [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 294 Score = 51.7 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 67/157 (42%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + ++R K + + + ++ +G+ V A+ V+ + + E R V+ Sbjct: 134 LAAAAQRRQKKVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSDEIRVVLT 193 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL L E + + + + E+S +++ GG ++L L +++ DR+ + Sbjct: 194 RVDSGLELGEELRKTAALLAVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 253 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + AK S ++ L + ++ PG++ + Sbjct: 254 QEYISKLSAKMSVVMMVFLFPALLIVL--AGPGFIAI 288 >gi|312114555|ref|YP_004012151.1| type II secretion system F domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311219684|gb|ADP71052.1| Type II secretion system F domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 396 Score = 51.7 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 26/194 (13%), Positives = 59/194 (30%), Gaps = 18/194 (9%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQH 60 + R F N + ++AGL + +++A++ + R V+ + Sbjct: 46 RSAASSRRPPF-KHIANFNRELTVLLQAGLSIPESLALLAVRPGQPRLEKALRLVLSEVN 104 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL E +S+ + + G L L + M+A+V Sbjct: 105 RGGSLREGMSKA-----QGAFDADYIALVGTGEEAGALPNCLQRYQNYADLKMKMRAQVL 159 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH-----------MLLGVAA 169 A + ++ + V G L ++ + + Sbjct: 160 KTMTYPAALLATLSAVLTFLFLEVIPNFIGMYRELGSELPAPTQILIAVERHFPAIAIGI 219 Query: 170 AFMLIGIMVMRLMI 183 +IG+ ++ + Sbjct: 220 TAAVIGVWILDRIA 233 >gi|167620218|ref|ZP_02388849.1| hypothetical protein BthaB_28185 [Burkholderia thailandensis Bt4] Length = 268 Score = 51.7 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66 +D+ P +D++ GL + ++ V+ + SE G + Sbjct: 114 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTRE 173 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ R+ +++ ++ + GG + E L LR+ + + + + Sbjct: 174 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 233 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154 K + +I +L + + PG + V Sbjct: 234 KMTGVMILTLLPALF--IVTAGPGMLAV 259 >gi|294055942|ref|YP_003549600.1| Type II secretion system F domain protein [Coraliomargarita akajimensis DSM 45221] gi|293615275|gb|ADE55430.1| Type II secretion system F domain protein [Coraliomargarita akajimensis DSM 45221] Length = 428 Score = 51.7 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 58/161 (36%), Gaps = 7/161 (4%) Query: 28 RAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87 +G+P+ DA+ V+ + S+P + E I + + + + Sbjct: 102 SSGMPIGDAIKVLSQRISNPEQKELATAIWRDLS----EGATLATALNRQPRYFASSVSF 157 Query: 88 ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 + + G+L+ LA + L +R ++ K+ A + T++ Sbjct: 158 VIEAGEATGSLAPILAKVIEYLEERDAIRKKMLASMAYPLVVCTFALGVVILFITVLLPR 217 Query: 148 SPGYMNVLINDPRGHMLLGVAAAFMLIG---IMVMRLMINF 185 MN + + + + + LI +++ L++ F Sbjct: 218 IQDMMNKIGGEMTWSARILMDGSSFLINFGPYILIALILAF 258 >gi|261402628|ref|YP_003246852.1| Type II secretion system F domain protein [Methanocaldococcus vulcanius M7] gi|261369621|gb|ACX72370.1| Type II secretion system F domain protein [Methanocaldococcus vulcanius M7] Length = 562 Score = 51.7 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 21/171 (12%), Positives = 58/171 (33%), Gaps = 9/171 (5%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 + +P L+ + +VR+G+ + A+ V + P+ +++ G ++E Sbjct: 356 NQKEKYYPIFLNDLTMAVRSGMDIIRAMQVCAKTNYGPLTKIVKKMAIQMSWGRPVNEVF 415 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + R ++++ + GG++ + L +++ MK ++ A Sbjct: 416 EDLERTEKSLIAKRIASILKECAVSGGDIKDILTSVTVHAYKLSEMKREISARQFIYVVV 475 Query: 130 AWIIGSLPFCV-STLVYFTSPGYMN--------VLINDPRGHMLLGVAAAF 171 ++ L +++ P + +L A Sbjct: 476 IYLSFFLYLGTSYIMIHSLLPTLLKNVHGGLGIEFYKSYLFQGVLIYALFS 526 >gi|148259903|ref|YP_001234030.1| type II secretion system protein [Acidiphilium cryptum JF-5] gi|146401584|gb|ABQ30111.1| type II secretion system protein [Acidiphilium cryptum JF-5] Length = 406 Score = 51.7 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 11/163 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + + + AGL + A+ G ++ VR+ + + G +L ++ Sbjct: 67 DALADFTRELAAMLGAGLDLERALRFAAGTAATPRVRAIILAICDKVRDGAALWRALGHE 126 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R P F + + G L+ L +L+ +L ++++A + A A Sbjct: 127 PRSFPP-----FYVGLVRAGEESGALAATLEDLAELLERNRSLRAAMIAGLTYPALLALA 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + L+ P ++ + + G L + IG Sbjct: 182 ATG---AIVFLLTNVLPEFVPIFAEN--GVPLPATTRLLLTIG 219 >gi|154151444|ref|YP_001405062.1| type II secretion system protein [Candidatus Methanoregula boonei 6A8] gi|153999996|gb|ABS56419.1| type II secretion system protein [Methanoregula boonei 6A8] Length = 224 Score = 51.7 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 59/178 (33%), Gaps = 5/178 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGL-SL 65 R P A++ I AG+ ++ ++ E R + + L Sbjct: 43 RRRNIDATLPYAINYITSMSTAGITPAEIFRLLGDSPIYGESSVEARYIARELDIFGRDL 102 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + P + F GGNL+E + K+ ++ Sbjct: 103 IDALRIVSSSTPSLRMKEFLQGAMASISSGGNLTEYFRTKAAQYALENRQTQKLFLDTLA 162 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + +++ + + ++ M+VL D + L V + G M+ +MI Sbjct: 163 LISESYVTAMVAGTLFLIIL---QSIMSVLGGDSKPIFLYVVIYLMIPFGTMMFIIMI 217 >gi|77917747|ref|YP_355562.1| type II secretory pathway, component PulF [Pelobacter carbinolicus DSM 2380] gi|77543830|gb|ABA87392.1| type II secretory pathway, component PulF [Pelobacter carbinolicus DSM 2380] Length = 401 Score = 51.3 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 56/173 (32%), Gaps = 7/173 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 F ++ +R+GLP+ + + + P++ ++V E G SLS + + Sbjct: 62 SRQFLTFNQEMLVLLRSGLPMLQVLDATLERLDAGPLQRSVQQVREAVKGGASLSSAFGQ 121 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 RY P + G+L+ + + +K KV+ + Sbjct: 122 FPRYFPY-----LYLAALQAGEQTGDLAVTIQRYVNYQKRIGQVKNKVKMAAFYPAMLCL 176 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRLMI 183 + + V D L + A +L G + + ++ Sbjct: 177 AAIGILVFMVLFVVPRFAEIFRDAKLDLPWVTRLLITLADLLTGHFLWLVPIV 229 Score = 35.1 bits (79), Expect = 4.1, Method: Composition-based stats. Identities = 14/137 (10%), Positives = 36/137 (26%), Gaps = 5/137 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 N + + +G+P+ A+ + ++ + S Sbjct: 264 LEYSLLNFTRTLATLMSSGIPLLPAMRMSRKTLNNRYLENHLEQAAERITEGKTPASALE 323 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + + + G L E L ++ D+ + + +E Sbjct: 324 EAGFFP-----SLALRMVKAGERSGALQEMLLEVAGYYEDQVEERLWRLSSMIEPLMMLL 378 Query: 132 IIGSLPFCVSTLVYFTS 148 I + V + Sbjct: 379 IGLLIGGVVVAMYIPIF 395 >gi|308068034|ref|YP_003869639.1| hypothetical protein PPE_01259 [Paenibacillus polymyxa E681] gi|305857313|gb|ADM69101.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 290 Score = 51.3 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 62/148 (41%), Gaps = 5/148 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG----QSSDPVRSEFRRVI 56 + ++KR + L + P L ++ V AG V A+ V + P+ E R+ + Sbjct: 133 LHGKVQKRDQQILMELPELLSKMMLLVGAGETVQRALLHCVERKGADTEHPLYRELRQTV 192 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVS-FFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 G S ++ + + +QE++ F +TV+ + G + AL LS+ L ++ Sbjct: 193 AEWESGFSFQQAFEHLSKRCGIQEMTVFTTTVLLNMRRGGSDFVMALRELSQTLWGKRTS 252 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTL 143 ++ + +K + L + + Sbjct: 253 ISRTRGEQASSKLVFPMALILLTVIVLV 280 >gi|303244717|ref|ZP_07331048.1| Type II secretion system F domain protein [Methanothermococcus okinawensis IH1] gi|302484931|gb|EFL47864.1| Type II secretion system F domain protein [Methanothermococcus okinawensis IH1] Length = 295 Score = 51.3 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 83/197 (42%), Gaps = 17/197 (8%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLG 62 + + + KF + P AL +++ S+ +G V DA+ ++ V F +++ Sbjct: 75 MYESKIEKFERNLPKALYVMILSLESGRSVIDAINEVINSGIKEVDVIFLKIVALMTEKK 134 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS +SI + + + +I + GG L+E L L++ L D +N+K ++ ++ Sbjct: 135 LSFEDSIILVSNSIDSKIFRQIGRLIIENRKHGGELAEVLKTLAKTLEDLQNLKNQLLSV 194 Query: 123 SME--AKASAWIIGSLPFCVSTL-------------VYFTSPGYMNVLINDP-RGHMLLG 166 + A I G +P + + +P + + + G + G Sbjct: 195 TANGLAVGLIIICGVIPATAGIIGGYLNAISQVAPNIAAVTPEQLAKCMENVQIGTGIFG 254 Query: 167 VAAAFMLIGIMVMRLMI 183 + A + G+ V R++I Sbjct: 255 ILFAVPIFGLKVNRMII 271 >gi|291547183|emb|CBL20291.1| Type II secretory pathway, component PulF [Ruminococcus sp. SR1/5] Length = 347 Score = 51.3 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 21/168 (12%), Positives = 56/168 (33%), Gaps = 12/168 (7%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 + + + + +G+ ++ + ++ +S D R +I + SLS ++ Sbjct: 8 RELSSFCGQMGMLLHSGISTAEGLHILCDESKTDADRQILTPLIRSVEENGSLSRALDES 67 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 T + G L E + +LS + + ++++ + Sbjct: 68 G------IFPTSMTAYVRTGEETGCLDEIMESLSSHYEQEEEISGQIRSAVTYPLLMLGM 121 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + + V N + G + GV+ + G ++ R Sbjct: 122 MAVVILVLLIKVLPVFQQVFNQM-----GMEMNGVSRGLLNAGNVISR 164 >gi|300933725|ref|ZP_07148981.1| hypothetical protein CresD4_06604 [Corynebacterium resistens DSM 45100] Length = 377 Score = 51.3 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 25/191 (13%), Positives = 62/191 (32%), Gaps = 10/191 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-----GQSSDPVRSEFRRV 55 ++ +R + +F A+ R +AG DAV ++ R Sbjct: 26 LRDKRTRRKIELEREFIGAV---SRESQAGARPEDAVLAAAQFVDDEAIANGALQLVARY 82 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVS--FFSTVISVQSQLGGNLSEALANLSRILRDRK 113 + ++ + + + +F + + ++ G LS + + Sbjct: 83 RLSIQGDKDVAADAGEGAEHGSSTQRNLGYFCQLWGIATERGIPLSVLAEAYACDIDAAL 142 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + K ++ A+ + ++ +LP L G + +P G +L+ V + Sbjct: 143 ERREKYESAMAGARLTVTVLLALPIGAVILGQTMGLGTPQFFVRNPLGALLVLVGSVLGC 202 Query: 174 IGIMVMRLMIN 184 G+ + Sbjct: 203 AGVQWTEFLTR 213 >gi|119719714|ref|YP_920209.1| type II secretion system protein [Thermofilum pendens Hrk 5] gi|119524834|gb|ABL78206.1| type II secretion system protein [Thermofilum pendens Hrk 5] Length = 295 Score = 51.3 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 65/172 (37%), Gaps = 3/172 (1%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 P + +VR+GL + +A++ + V R+V+ +G++ E+I Sbjct: 82 RSVESVLPELFKGLAEAVRSGLTLPEALSSVAETLGGEVGKMLRQVVLLTEMGVTFQEAI 141 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 +R L + +++ + GG + +AL ++I ++ + + + Sbjct: 142 ARAFSRYRLPSLDRLGSILLTAYESGGKVIDALETSAQIFGAIRSYEEERATTINPHVLT 201 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL---GVAAAFMLIGIMV 178 + L +S + + ++ L P + AA G+M+ Sbjct: 202 IYAATILYVILSLTILYVFVMPLSRLQGIPGALGKINPGVYAAVMYYSGVMI 253 >gi|307352779|ref|YP_003893830.1| type II secretion system F domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307156012|gb|ADN35392.1| Type II secretion system F domain protein [Methanoplanus petrolearius DSM 11571] Length = 603 Score = 51.3 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 21/179 (11%), Positives = 61/179 (34%), Gaps = 4/179 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQHLGL-S 64 R + D P A+ + +++ + + + V E +I Sbjct: 100 RKTRIELDLPYAVTYM-QALSTTMTLFSIFKSVSDNEDLYGEVSKECGMIIRDVEYFGDD 158 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L ++ + P S +++ + GG++++ A+ S R+ + + +M Sbjct: 159 LLTAMRNVQESTPSPTFSELLNDLAMVFKTGGSMTDFFASKSAHYRETAMQELENTLKTM 218 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E A ++ + ++ ++ + D ++ I ++ +M+ Sbjct: 219 EIMAEIYVTAFVAGPIAIMIMVVAQNLSGQSTIDLLEPLMYIGLPIGASAMIFLLYIMM 277 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 53/146 (36%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 KF P L I G+ + A+ +I + SE + E +G S+S ++ Sbjct: 398 KKFESQLPGFLREISDMKDMGMTLQSAIHIIAQSKIGVLTSEVKIASEEIKMGTSVSSAL 457 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 ++ + L V +++ S++ +L E LA L MK + +S A Sbjct: 458 YKLEERIGLVSVKRAISLVIKASEITDHLREILAIAISDLEHYLRMKNERFGVSFIYVAI 517 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ + + + + Sbjct: 518 IYLSYGIFLYSAYELNVSFVQSFMDF 543 >gi|218886131|ref|YP_002435452.1| type II secretion system protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757085|gb|ACL07984.1| type II secretion system protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 405 Score = 51.3 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 19/187 (10%), Positives = 57/187 (30%), Gaps = 28/187 (14%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 + +AG+P++ + V+ Q+ ++ + ++ G +L ++ Sbjct: 64 KELILFTKQFRTLFQAGIPITQLLQVLQNQTESKRLKQIAADMAQSIVGGSTLYDAFRAH 123 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R S + + G L + + L +L +++ +++ K + Sbjct: 124 PR-----VFSELYCSMMRAGEASGALGDVMERLVYLLEHEHKIRSDIKSAMRYPK---MV 175 Query: 133 IGSLPFCVSTLVYFTSPGYMNVL------------------INDPRGHMLLGVAAAFMLI 174 + +L L+ P ++ + ++ + Sbjct: 176 VSALLAAFFILLNVVIPKFVVIFARAKIELPWPTQVAMGMHYIMTTYWPIVLGLLVAAIA 235 Query: 175 GI-MVMR 180 G +R Sbjct: 236 GYKWWVR 242 >gi|167911130|ref|ZP_02498221.1| type II secretion system protein [Burkholderia pseudomallei 112] Length = 267 Score = 51.3 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66 +D+ P +D++ GL + ++ V+ + SE G + Sbjct: 113 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 172 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ R+ +++ ++ + GG + E L LR+ + + + + Sbjct: 173 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 232 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154 K + +I +L + + PG + V Sbjct: 233 KMTGVMILTLLPALF--IVTAGPGMLAV 258 >gi|167738780|ref|ZP_02411554.1| type II secretion system protein [Burkholderia pseudomallei 14] Length = 271 Score = 51.3 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66 +D+ P +D++ GL + ++ V+ + SE G + Sbjct: 117 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 176 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ R+ +++ ++ + GG + E L LR+ + + + + Sbjct: 177 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 236 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154 K + +I +L + + PG + V Sbjct: 237 KMTGVMILTLLPALF--IVTAGPGMLAV 262 >gi|163782961|ref|ZP_02177956.1| fimbrial assembly protein PilC2 [Hydrogenivirga sp. 128-5-R1-1] gi|159881641|gb|EDP75150.1| fimbrial assembly protein PilC2 [Hydrogenivirga sp. 128-5-R1-1] Length = 397 Score = 51.3 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 57/162 (35%), Gaps = 10/162 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 ++ L + + AG+ ++ A+ ++ Q+ D V S + + G LS + R Sbjct: 62 EEELSFVLLQLSVLIEAGISLARALELVASQTEDERVASALLEIKGSVERGEPLSSAFRR 121 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 F + + ++ G NL A + L +MK+++ Sbjct: 122 SGL------FPEFLSEMLTAAETGENLERIFAIAGKHLETVADMKSRIVGAITYPS---V 172 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 +IG F + + F P VL R L+ + Sbjct: 173 VIGFSIFALFVAIKFVVPKIAKVLEGFGRELPLVTKVVILLS 214 >gi|268679669|ref|YP_003304100.1| type II secretion system F domain protein [Sulfurospirillum deleyianum DSM 6946] gi|268617700|gb|ACZ12065.1| Type II secretion system F domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 413 Score = 51.3 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 73/186 (39%), Gaps = 14/186 (7%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLS 66 R + A+ + AG+ + D+V + + +++ F+ + + + GLSL+ Sbjct: 66 RKKIKITSLIAAIRQLSVMTNAGISIHDSVKEVANATVDKTLKTIFQSINDDLNSGLSLT 125 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ +V + + + GN++E+L L+ IL + + + K + Sbjct: 126 QSLMSYRE-----DVGDVTIAMVELGESTGNMAESLEKLAEILEEIEENRQKFKKALRYP 180 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-----IGIMVMRL 181 ++ ++ + L+ + P + ++ L FM G+ ++ Sbjct: 181 TT---VVIAIAIAFTILMVYVVPKFKDIFSKLKAELPLPTKILLFMENMINHYGLYLLAG 237 Query: 182 MINFDV 187 +I V Sbjct: 238 LIAIIV 243 >gi|320009994|gb|ADW04844.1| Type II secretion system F domain protein [Streptomyces flavogriseus ATCC 33331] Length = 270 Score = 51.3 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 41/132 (31%), Gaps = 3/132 (2%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 P D++ + AG +A + + PV R LG E+ R Sbjct: 125 IARQLPITADLLASCLSAGAGPREAAEAVGESVAGPVGERLARTAAVILLGGEPDEAWRR 184 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + ++ S G +E ++ L+ +R + A +A +A Sbjct: 185 FGEL---PGAAPLARCMARASSTGAPAAEPVSGLADEIRAERASAAVARAQRAGVLITAP 241 Query: 132 IIGSLPFCVSTL 143 + + Sbjct: 242 VGLCFLPAFLAV 253 >gi|217322869|ref|YP_002327089.1| pilin biogenesis protein (pilC) [Acinetobacter baumannii AB307-0294] gi|213985997|gb|ACJ56296.1| pilin biogenesis protein (pilC) [Acinetobacter baumannii AB307-0294] Length = 163 Score = 51.3 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 12/122 (9%), Positives = 37/122 (30%), Gaps = 15/122 (12%) Query: 1 MKHLIKKRTAKFL---------DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51 ++ + +KR D + ++AG+P+ ++ +P E Sbjct: 47 VRTIREKRKNILEGLFKKKVTTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMRE 106 Query: 52 FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 + G + + ++ + ++ + + G L L ++ Sbjct: 107 VVLGIKGEVEGGSTFASALRKYPQH-----FDNLFCSLVESGEQSGALETMLDRVAIYKE 161 Query: 111 DR 112 + Sbjct: 162 KK 163 >gi|21323066|dbj|BAB97695.1| Hypothetical membrane protein [Corynebacterium glutamicum ATCC 13032] Length = 272 Score = 51.3 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 60/183 (32%), Gaps = 7/183 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--PVRSEFRRVIETQH 60 H +RT + + L + ++RAG+ + DA+ + ++ + + Sbjct: 89 HAAAQRTKQ-SLQLASFLSLCAGNLRAGVTMVDAMDYALDNTTPDKFLSPTLQTAARQAR 147 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S + ++ + + G L + + + ++ + Sbjct: 148 SGGSGPRVLIDASL----PDLQRLGHLWETSERHGIPLVALIDQMRSRISSKQRHGESTR 203 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A +A+A I+ LP + + +L G LL + G ++ Sbjct: 204 AALQGPQATAVILTVLPLAGMLMGTAMGANPLGLLTGGGIGGFLLVIGVGLDAAGFVLTH 263 Query: 181 LMI 183 ++ Sbjct: 264 KIL 266 >gi|46579682|ref|YP_010490.1| general secretion pathway protein F [Desulfovibrio vulgaris str. Hildenborough] gi|46449097|gb|AAS95749.1| general secretion pathway protein F, putative [Desulfovibrio vulgaris str. Hildenborough] gi|311233478|gb|ADP86332.1| Type II secretion system F domain protein [Desulfovibrio vulgaris RCH1] Length = 408 Score = 51.3 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 19/159 (11%), Positives = 48/159 (30%), Gaps = 7/159 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + +AG+P++ + V+ Q+ I + + + Sbjct: 67 KELILFTKQFRTLFQAGIPITQLLQVLQNQTEHKRLKA----IAAEMSQAIMGGATLYDA 122 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + S + + G L E + L +L +++ +++ K ++ Sbjct: 123 FRAHPKVFSELYCSMMRAGEASGALGEVMDRLVYLLEHEHKIRSDIKSALRYPK---MVM 179 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 G+L L+ P ++ + A M Sbjct: 180 GALAVAFFVLLNLVIPKFVLIFSQARITLPWPTKIAIGM 218 >gi|307824595|ref|ZP_07654819.1| Type II secretion system F domain protein [Methylobacter tundripaludum SV96] gi|307734249|gb|EFO05102.1| Type II secretion system F domain protein [Methylobacter tundripaludum SV96] Length = 408 Score = 51.3 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 19/160 (11%), Positives = 52/160 (32%), Gaps = 7/160 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + ++AG+P+ A++ ++ + + + + + G LS +++ + Sbjct: 71 FSRQMYTLLKAGIPIMSALSGLLSSTKNKALVKVISEICSSLDSGRELSAALNLHPK--- 127 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + F + + G L + L + K M +++A + Sbjct: 128 --VFNGFYVSMIRVGETTGMLDKVFMRLFDHIEFEKFMGEQIKAALRYPTFVMIAMIVAV 185 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHM-LLGVAAAFMLIGI 176 ++ V L + +L + FM+ Sbjct: 186 VVINIFVIPAFAKVFQGLGAELPLMTRILLTCSDFMVTSW 225 Score = 37.8 bits (86), Expect = 0.72, Method: Composition-based stats. Identities = 13/132 (9%), Positives = 40/132 (30%), Gaps = 5/132 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 S ++G+P+ + ++ + ++ +E G+ ESI R Sbjct: 271 LARFARSFALSSKSGVPIMSTLNLVAQTVDNDFIAQK---VEQMRAGVERGESILRTATN 327 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + G L + + ++ + + + K +E ++ Sbjct: 328 TG--VFNPLVLQMIAVGEESGALDDLMEEIADMYQRDVEYEIKTLGAKIEPIMIVFLGIL 385 Query: 136 LPFCVSTLVYFT 147 + + Sbjct: 386 VLILALGIFLPI 397 >gi|259907441|ref|YP_002647797.1| General secretion pathway protein F (Pectic enzymes secretion protein OutF) [Erwinia pyrifoliae Ep1/96] gi|224963063|emb|CAX54546.1| General secretion pathway protein F (Pectic enzymes secretion protein OutF) [Erwinia pyrifoliae Ep1/96] gi|283477273|emb|CAY73189.1| Type II secretion system protein outF [Erwinia pyrifoliae DSM 12163] Length = 401 Score = 51.3 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 24/179 (13%), Positives = 50/179 (27%), Gaps = 20/179 (11%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + V A LP+ A+ + Q++ P I + L + + Sbjct: 67 MTRQLATLVGAALPLEQALLALERQTTKPAGRTMLHAIRQKV----LEGASLADAVGLYP 122 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L L L+ + +K+K+ + + S+ Sbjct: 123 ATFPPLYQAMIAAGEASGKLDNVLEQLADYSEKTQQIKSKLTQAMIYPLLLTLVAISVIT 182 Query: 139 CVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVMRL 181 + T V + + I G +L V I +++R Sbjct: 183 ILLTAVVPSVVEQFVHMKQALPLSTRLLMSISEITRAIGLPVLLVMLLAGFIARVMLRR 241 >gi|77456872|ref|YP_346377.1| type II secretion system protein [Pseudomonas fluorescens Pf0-1] gi|77380875|gb|ABA72388.1| putative type II secretion system protein [Pseudomonas fluorescens Pf0-1] Length = 296 Score = 51.3 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 61/147 (41%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + +R + + + ++ AG+ V A+ V+ + + E R V+ Sbjct: 136 LAMAAGRRQKQLATEISTFIPLLRILFEAGMAVEQALRVLSHEGQTLLPVLTQELRLVLA 195 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL L E +++ R + + E + ++ Q GG ++L L ++L DR+ + Sbjct: 196 RVDSGLELGEELNKATRLLAVDEFTDTCVILQQLLQQGGGAMKSLLALKQLLDDRRLTRL 255 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + M AK S ++ L + ++ Sbjct: 256 QEYISKMSAKMSVVMMMFLFPALLIVL 282 >gi|317489280|ref|ZP_07947797.1| hypothetical protein HMPREF1023_01496 [Eggerthella sp. 1_3_56FAA] gi|316911681|gb|EFV33273.1| hypothetical protein HMPREF1023_01496 [Eggerthella sp. 1_3_56FAA] Length = 402 Score = 51.3 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 59/183 (32%), Gaps = 21/183 (11%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSES 68 + + AG+P + A +++ Q + ++ V G SL+ES Sbjct: 60 KAKQKNLAVMCAQFATILNAGVPAARATSLVADQVTDKYLKRVLADVAADVASGHSLAES 119 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 +P + G+L E+ L R + AKVQ+ Sbjct: 120 FQSKGENLP-----RVFIETVRAGEESGHLPESFQRLHGYFDKRAKVSAKVQSAMTYPIF 174 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH---------------MLLGVAAAFML 173 A I + + +V + G + L D +L+ V A ++ Sbjct: 175 VAVIAVVVLAIMMVMVIPSMTGMIASLGADTPAMTQFLIDASNFVTDNFLLIAVVLALIV 234 Query: 174 IGI 176 +G+ Sbjct: 235 VGV 237 Score = 35.1 bits (79), Expect = 4.1, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 40/139 (28%), Gaps = 7/139 (5%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRY 75 + + V AGLP + AVA+ S+ + E R+ G +L E + Sbjct: 270 AQFANTMAMLVTAGLPATRAVAITSRVMSNYVLSREVGRLEAGLEEGRTLGEGLEA---- 325 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + G L E L + D ME + Sbjct: 326 --STYLPRTLVEMVAVGEHTGELEETLETMGAFYDDETQRVTNKAISIMEPALLVLMALF 383 Query: 136 LPFCVSTLVYFTSPGYMNV 154 F V L Y + Sbjct: 384 AGFIVIALYLPMFSLYAAM 402 >gi|120612796|ref|YP_972474.1| type II secretion system protein [Acidovorax citrulli AAC00-1] gi|120591260|gb|ABM34700.1| type II secretion system protein [Acidovorax citrulli AAC00-1] Length = 427 Score = 51.3 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 21/159 (13%), Positives = 58/159 (36%), Gaps = 8/159 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +RAGL + +A+ V++ + + + V++ G LS ++++ Sbjct: 97 LSIMLRAGLALDNALRVLIDMSHKPSMATLLQGVLDAVKGGTPLSRALAQHRDLFGD--- 153 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F + + G +S L L + ++ ++ V + ++ + + Sbjct: 154 --FYINMIRSGEASGQMSAVLERLVAHMERQRALRDSVISATIYPAILLGVAVLSLIAML 211 Query: 142 TLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMV 178 V + + M++ + AF G+++ Sbjct: 212 GFVVPQFEKLFTDMGDALPLPTQMVMALGHAFTRYGLLI 250 >gi|256846649|ref|ZP_05552105.1| general secretion pathway protein F [Fusobacterium sp. 3_1_36A2] gi|294784358|ref|ZP_06749649.1| general secretion pathway protein F [Fusobacterium sp. 3_1_27] gi|256717869|gb|EEU31426.1| general secretion pathway protein F [Fusobacterium sp. 3_1_36A2] gi|294487930|gb|EFG35285.1| general secretion pathway protein F [Fusobacterium sp. 3_1_27] Length = 346 Score = 51.3 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 66/170 (38%), Gaps = 13/170 (7%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGL 63 +K + K L + + +++GL + A+ +I+ + D E +++ + G Sbjct: 1 MKNKKEKIL----FFTNELAIMLKSGLTFTTAIEIILKEEKDKNFKEVLKKIHKNLIAGK 56 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S+ ES R + ++ G+++E L ++S+ L + K+ + Sbjct: 57 SIFESFKNFDRIFGN-----TYLYMLKIGEVSGSIAERLEDISKSLEFDLANQKKLGGIL 111 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + +I V+ L+ F P ++ + + L+ F+ Sbjct: 112 VYPI---VVISLTFIIVTFLLTFILPDFITIFEENQVELPLITKILLFIS 158 >gi|159039934|ref|YP_001539187.1| type II secretion system protein [Salinispora arenicola CNS-205] gi|157918769|gb|ABW00197.1| type II secretion system protein [Salinispora arenicola CNS-205] Length = 255 Score = 51.3 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 48/142 (33%), Gaps = 4/142 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P A D++ +RAG PV +V + P+ V LG +E+ S + Sbjct: 117 LPLAADLLASVMRAGAPVDRSVLAVAEALDGPLAERLALVGRLLRLGAEPAEAWSTLAAV 176 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IG 134 + G L+ AL L+ LR + + + +A + + Sbjct: 177 ---PGAERLIAAALRSAASGATLAGALTRLADDLRADRATEVEAKARRSGVLIVLPLGLC 233 Query: 135 SLPFCVSTLVYFTSPGYMNVLI 156 LP + + + ++ Sbjct: 234 FLPAFILAGLMPVIVAVLGDVL 255 >gi|296158799|ref|ZP_06841628.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] gi|295891004|gb|EFG70793.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] Length = 336 Score = 51.3 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 61/157 (38%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 ++ KR +D+ P +D++ GL + ++ V+V + E Sbjct: 173 LRRRAGKRRNGVVDELPLLVDLLRLLQGVGLSLDQSLQVVVNDFRGMLPVLAGELEIAQR 232 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S++R+ +++ ++ + GG + E L LR+ + Sbjct: 233 QFAAGRTREQSLNRLATSYDNEDLRAVMRLLVQVDRHGGAVQEPLKQFGDRLRETRRAML 292 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + + K + +I +L + ++ PG + V Sbjct: 293 RERIGRLAVKMTGVMIVTLLPAL--MIVTAGPGVLAV 327 >gi|237786542|ref|YP_002907247.1| hypothetical protein ckrop_1996 [Corynebacterium kroppenstedtii DSM 44385] gi|237759454|gb|ACR18704.1| hypothetical protein ckrop_1996 [Corynebacterium kroppenstedtii DSM 44385] Length = 216 Score = 51.3 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 63/181 (34%), Gaps = 6/181 (3%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ------SSDPVRSEFRRVIETQHLG 62 + + + A +I + AG AV + + V E R ++ Sbjct: 30 QRQVIAQWAQASSMIASELLAGASPLVAVRHVADEMDGADDMEGQVARELRTMVNHCAWL 89 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + +S + V + G L+E + + L+ + + + + +A Sbjct: 90 GAPCAPLSTWSSEPEQVGRQAIARAWLVSHRTGVPLAEVMQATAADLQAKLHHQERTEAS 149 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 +AS ++ LP + G ++ L+ G +LL V ++G+ R + Sbjct: 150 LAGPRASTRVLMFLPLVGVAMGQSMGAGSIHFLLTTQLGGLLLLVGVVLEVVGLEWSRAL 209 Query: 183 I 183 + Sbjct: 210 M 210 >gi|226325874|ref|ZP_03801392.1| hypothetical protein COPCOM_03687 [Coprococcus comes ATCC 27758] gi|225205998|gb|EEG88352.1| hypothetical protein COPCOM_03687 [Coprococcus comes ATCC 27758] Length = 141 Score = 51.3 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 6/139 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRR 54 ++ +K F F +AL + + G + +A+ + + EF Sbjct: 2 IRQAEEKGKRCFERQFQDALQSLEAQLNVGYSMENAIKEVQRDLQIMYDRHTLIVREFTY 61 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 ++ +L ++ + + L EV F TV S+ + GG+ + N R L D+ Sbjct: 62 MVRQLNLNVTAEAAWKDFAARVALPEVDTFVTVFSLAKRSGGDSILIIKNAVRQLGDKAE 121 Query: 115 MKAKVQALSMEAKASAWII 133 +K ++ + K + Sbjct: 122 VKREIDTVIAAKKWNFRSC 140 >gi|289449641|ref|YP_003475052.1| hypothetical protein HMPREF0868_0732 [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184188|gb|ADC90613.1| conserved hypothetical protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 545 Score = 51.3 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 25/186 (13%), Positives = 74/186 (39%), Gaps = 6/186 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA------VIVGQSSDPVRSEFRRVIE 57 L +R + F + L I+ + G+ ++A V++ + + + + Sbjct: 62 LASRRARLYRLIFGHFLQIMSAELTGGMTFTNAFTGAIADLVLITGTRNRLMQQLCNASG 121 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L ++ + + +E + S+Q + GN++ + ++ D + +A Sbjct: 122 MLAAHLPAAQVLDELSNQSVCREAKPILKIFSLQLRNNGNMNNLCKFATTMVNDLNDTEA 181 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++ A S + A+I+ ++P+ +S ++ F++ Y G ++ + + Sbjct: 182 QITADSNKQTVEAFIMAAMPYIMSAILQFSAGSYYAQASITTLGRVMKLASLFVAVTASA 241 Query: 178 VMRLMI 183 + ++ Sbjct: 242 LTFYIV 247 Score = 35.9 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 51/149 (34%), Gaps = 5/149 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAV---IVGQSSDPVRSEFRRVIETQHLGLSLSES 68 ++ FP +I + +G A+ + + +D + + R++ G + Sbjct: 399 LINKFPFFAGLINALLNSGFVPYRALEISINLYAGETDVLGNALRKINADMRRGENYCRG 458 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + ++ + E+ +I+ + G +AL L+ + E Sbjct: 459 LVDLAKHSYVPEIQSALNLINQYAIQGNG--QALTLLAVQCNTCWQLSRNTMRKYREKST 516 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 +I + +S ++ +P + Sbjct: 517 FKILIPMMLNLISIIILTVAPVIATFSFS 545 >gi|167845911|ref|ZP_02471419.1| type II secretion system protein [Burkholderia pseudomallei B7210] Length = 270 Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66 +D+ P +D++ GL + ++ V+ + SE G + Sbjct: 116 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 175 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ R+ +++ ++ + GG + E L LR+ + + + + Sbjct: 176 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 235 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154 K + +I +L + + PG + V Sbjct: 236 KMTGVMILTLLPALF--IVTAGPGMLAV 261 >gi|330873645|gb|EGH07794.1| hypothetical protein PSYMP_04415 [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330963434|gb|EGH63694.1| hypothetical protein PSYAC_02052 [Pseudomonas syringae pv. actinidiae str. M302091] Length = 294 Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 67/157 (42%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + ++R + + + + ++ +G+ V A+ V+ + + E R V+ Sbjct: 134 LAAAAQRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSDEIRVVLT 193 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL L E + + + + E+S +++ GG ++L L +++ DR+ + Sbjct: 194 RVDSGLELGEELRKTAALLAVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 253 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + AK S ++ L + ++ PG++ + Sbjct: 254 QEYISKLSAKMSVVMMVFLFPALLIVL--AGPGFIAI 288 >gi|282892148|ref|ZP_06300622.1| hypothetical protein pah_c209o016 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281497949|gb|EFB40294.1| hypothetical protein pah_c209o016 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 392 Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 24/169 (14%), Positives = 55/169 (32%), Gaps = 10/169 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 DD + + + AG+P+ +A+ I Q + S + + G LSE++ Sbjct: 55 DDLLAFTFQLSQLLGAGVPLYEALIAIEEQYRNESFHSIILSLCDQIKAGTPLSEAMQNY 114 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G L L LS +L ++ ++ ++ + + Sbjct: 115 PDS-----FNRLYCSMVRAGESVGALDLVLEKLSLLLNKQQKLRKEITTAMIYPA---VL 166 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIN-DPRGHMLLGVAAAFMLIGIMVMR 180 + L+ F P + + G +A + + Sbjct: 167 ACFALLVICLLLGFVVPSIEGIFADKQLNGFTQAVLAVSHFFRDYWWLY 215 Score = 43.2 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 9/140 (6%), Positives = 34/140 (24%), Gaps = 5/140 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + G+ + D++ + + E + + E Sbjct: 250 RNLVIQAAVSRFCRTMATLQNGGVTMIDSLRIARETMRNATLEEEIK-----RAESKIIE 304 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 S + M + + + + G+ + ++ + D + Sbjct: 305 GSSLSAQLMQSKYFPHMVSRMLAVGEDSGSSVIMMNKIADMYEDELEKTLSRVMALAQPV 364 Query: 128 ASAWIIGSLPFCVSTLVYFT 147 + + + ++ Sbjct: 365 ILIVMGTVIGAVMMAVLLPL 384 >gi|326318814|ref|YP_004236486.1| Type II secretion system F domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375650|gb|ADX47919.1| Type II secretion system F domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 427 Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 65/178 (36%), Gaps = 25/178 (14%) Query: 23 IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +RAGL + +A+ V++ + + V++ G LS ++S+ Sbjct: 97 LSIMLRAGLALDNALRVLIDMSHKPSMAVLLQGVLDAVKGGTPLSRALSQHRDLFGD--- 153 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F + + G +S L L + ++ ++ V + ++ ++G + Sbjct: 154 --FYINMIRSGEASGQMSAVLERLVAHMERQRALRDSVISATIYPA---ILLGVAVLSLI 208 Query: 142 TLVYFTSPGYMNVLINDPRGHML----------------LGVAAAFMLIGIMVMRLMI 183 ++ F P + + + L L + A + +G++V R + Sbjct: 209 AMLGFVVPQFEKLFTDMGDALPLPTQLVMALGHAFTRYGLLIGIAVLGLGLLVRRWVT 266 >gi|257789821|ref|YP_003180427.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|325832326|ref|ZP_08165325.1| type II secretion system protein F domain protein [Eggerthella sp. HGA1] gi|257473718|gb|ACV54038.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|325486162|gb|EGC88616.1| type II secretion system protein F domain protein [Eggerthella sp. HGA1] Length = 402 Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 59/183 (32%), Gaps = 21/183 (11%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSES 68 + + AG+P + A +++ Q + ++ V G SL+ES Sbjct: 60 KAKQKNLAVMCAQFATILNAGVPAARATSLVADQVTDKYLKRVLADVAADVASGHSLAES 119 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 +P + G+L E+ L R + AKVQ+ Sbjct: 120 FQSKGENLP-----RVFIETVRAGEESGHLPESFQRLHGYFDKRAKVSAKVQSAVTYPIF 174 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH---------------MLLGVAAAFML 173 A I + + +V + G + L D +L+ V A ++ Sbjct: 175 VAVIAVVVLAIMMVMVIPSMTGMIASLGADTPAMTQFLIDASNFVTDNFLLIAVVLALIV 234 Query: 174 IGI 176 +G+ Sbjct: 235 VGV 237 Score = 35.5 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 40/139 (28%), Gaps = 7/139 (5%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRY 75 + + V AGLP + AVA+ S+ + E R+ G +L E + Sbjct: 270 AQFANTMAMLVTAGLPATRAVAITSRVMSNYVLSREVGRLEAGLEEGRTLGEGLEA---- 325 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + G L E L + D ME + Sbjct: 326 --STYLPRTLVEMVTVGEHTGELEETLETMGAFYDDETQRVTNKAISIMEPALLVLMALF 383 Query: 136 LPFCVSTLVYFTSPGYMNV 154 F V L Y + Sbjct: 384 AGFIVIALYLPMFSLYAAM 402 >gi|315125825|ref|YP_004067828.1| general secretion pathway protein F [Pseudoalteromonas sp. SM9913] gi|315014339|gb|ADT67677.1| general secretion pathway protein F [Pseudoalteromonas sp. SM9913] Length = 370 Score = 50.9 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 20/172 (11%), Positives = 50/172 (29%), Gaps = 6/172 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 D + +++ LPV AV + Q ++ V G +L++ +S Sbjct: 29 TSDLALITRQLATLIQSALPVEGAVMAVAEQCEKPRLKRMLMSVRSKVVEGYTLADGMSE 88 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + G+L + L L+ R++M++++ + Sbjct: 89 FP-----HVFDDLYRAMVAAGEKSGHLDQVLNRLADYTEQRQHMRSQITQAMVYPIILVV 143 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + V +A + + + L+ Sbjct: 144 FAIGIVSVLLGTVVPKILKTFEKTKQVLPWTTEWVMAGSHFVQNYWFVSLLA 195 >gi|297627214|ref|YP_003688977.1| hypothetical protein PFREUD_20690 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922979|emb|CBL57561.1| Hypothetical membrane protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 247 Score = 50.9 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 55/153 (35%), Gaps = 4/153 (2%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 + R L P LD+I + AG P+ A + + +P S R V +G S Sbjct: 98 RARREALLGQQPEVLDLIAAAQEAGSPLRRAAGEVAALAPEPSASVLREVDAHLRVGFSE 157 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +E+ + + ++ ++ G +++ + + R+ +A ++ Sbjct: 158 AEAWQSLADD---PVWGSTARDLARSARTGEAVADTIHLHATRTREAHRDHLNKKARTVA 214 Query: 126 AKAS-AWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 K+ + LP + V G + + Sbjct: 215 VKSVGPMMACFLPAFILAGVVPIFVGIASRYLG 247 >gi|167570100|ref|ZP_02362974.1| hypothetical protein BoklC_09666 [Burkholderia oklahomensis C6786] Length = 261 Score = 50.9 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66 +D+ P +D++ GL + ++ V+ + SE G + Sbjct: 107 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTRE 166 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ R+ +++ ++ + GG + E L LR+ + + + + Sbjct: 167 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 226 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154 K + +I +L + + PG + V Sbjct: 227 KMTGVMIVTLLPALF--IVTAGPGMLAV 252 >gi|284162413|ref|YP_003401036.1| type II secretion system protein [Archaeoglobus profundus DSM 5631] gi|284012410|gb|ADB58363.1| type II secretion system protein [Archaeoglobus profundus DSM 5631] Length = 628 Score = 50.9 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 18/167 (10%), Positives = 55/167 (32%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + ++ K + P+ + AGL V + + V+ + E + Sbjct: 409 LVEIKERVMRKTEERIPDVFSELAMLNEAGLTVLEGLRVLSQTEMGLLTREIAVMRREIE 468 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + + R+ + +S V+ + + +A ++R K +++ Sbjct: 469 WGVLIPRAFIRLGIRVKSDILSKIVPVVVKALETAPTIKDAFNVVARYADTEVAFKKRMR 528 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 + ++ ++ + + ++ + L G L Sbjct: 529 SSTLLYVIIIYMCIVVFLTTTYMIITSFFKPFVGLSGVSVGGYALSF 575 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 67/186 (36%), Gaps = 7/186 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQH 60 L K+R + P+A+ ++ G+P+ + + + + EF ++E Sbjct: 127 FLAKRRRNEIELYLPHAISMMYSMATGGIPIHNMIRTVAESKHIFGELSREFMIIVEMVD 186 Query: 61 LGLSLSESISRMVRY-MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + R VR P ++S F + + GG LSE L S L + + + Sbjct: 187 VFKRNIYDGMRFVRDTTPSPQLSSFLDNMIFILEGGGRLSEFLRRKSEELSEERERTFES 246 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + A +I + + L+ + + ++ P + + + M M Sbjct: 247 FIELLGMMAEVYIALFVVLPLFLLIVLS----VTRILGTPFEIYRIILIVTLPVATFMFM 302 Query: 180 RLMINF 185 ++ + Sbjct: 303 YIIRSI 308 >gi|167824379|ref|ZP_02455850.1| type II secretion system protein [Burkholderia pseudomallei 9] Length = 266 Score = 50.9 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66 +D+ P +D++ GL + ++ V+ + SE G + Sbjct: 112 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 171 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ R+ +++ ++ + GG + E L LR+ + + + + Sbjct: 172 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 231 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154 K + +I +L + + PG + V Sbjct: 232 KMTGVMILTLLPALF--IVTAGPGMLAV 257 >gi|312880041|ref|ZP_07739841.1| Type II secretion system F domain [Aminomonas paucivorans DSM 12260] gi|310783332|gb|EFQ23730.1| Type II secretion system F domain [Aminomonas paucivorans DSM 12260] Length = 407 Score = 50.9 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 59/172 (34%), Gaps = 14/172 (8%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLS 66 R A + V AG+ V+ A+ ++ Q + + + F RV + G SL Sbjct: 65 RIRLKDKAL--AFRQMSTMVAAGITVAGALNILEDQIQNKALAAAFTRVGKGVAAGFSLG 122 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 S+ R + P + + GG L +L LS L ++ ++ KV + Sbjct: 123 TSLRREAAFSP------LMVALIQAGEEGGVLDLSLQRLSDFLEKQEALRRKVLSAVTYP 176 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + + +V + L G L V A + + Sbjct: 177 LVVLLVCALVMVLLVFVVIPKFSAVFSHL-----GVPLPWVTRAMFGSALWL 223 Score = 43.2 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 12/140 (8%), Positives = 40/140 (28%), Gaps = 5/140 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + V +G+P+ + + + + + + ++++ + Sbjct: 273 LARSFRTFGTLVASGVPLLQCLEMSSQVADNHHVARSYLTLRDAAEKGVPLHAVAKKNKL 332 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + + G L E L ++ K K +E ++ G Sbjct: 333 FPP-----MVCHMMAIGEETGKLEEMLGKIADWYEMELEEKVKQLTSILEPVLILFVGGV 387 Query: 136 LPFCVSTLVYFTSPGYMNVL 155 + + + +++ Sbjct: 388 VALVALAIFLPITQAIQSMM 407 >gi|238563945|ref|ZP_00437984.2| type II secretion system protein [Burkholderia mallei GB8 horse 4] gi|238519622|gb|EEP83092.1| type II secretion system protein [Burkholderia mallei GB8 horse 4] Length = 268 Score = 50.9 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66 +D+ P +D++ GL + ++ V+ + SE G + Sbjct: 114 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 173 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ R+ +++ ++ + GG + E L LR+ + + + + Sbjct: 174 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 233 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154 K + +I +L + + PG + V Sbjct: 234 KMTGVMILTLLPALF--IVTAGPGMLAV 259 >gi|167902893|ref|ZP_02490098.1| type II secretion system protein [Burkholderia pseudomallei NCTC 13177] Length = 264 Score = 50.9 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66 +D+ P +D++ GL + ++ V+ + SE G + Sbjct: 110 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 169 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ R+ +++ ++ + GG + E L LR+ + + + + Sbjct: 170 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 229 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154 K + +I +L + + PG + V Sbjct: 230 KMTGVMILTLLPALF--IVTAGPGMLAV 255 >gi|313683366|ref|YP_004061104.1| type ii secretion system f domain [Sulfuricurvum kujiense DSM 16994] gi|313156226|gb|ADR34904.1| Type II secretion system F domain [Sulfuricurvum kujiense DSM 16994] Length = 412 Score = 50.9 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 57/154 (37%), Gaps = 9/154 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 LD + + AG+P++ +A V + + + F V+ G SLS ++S+ + Sbjct: 77 FLDQLSVMLDAGMPINICLADTVDNTEDPMLHAIFSEVLSNIESGQSLSFALSKYQTQLG 136 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L+ A+A LS I + N + ++ + +II ++ Sbjct: 137 K-----LTLSMFELGEQTGTLNIAIAKLSTIFQQIHNNRQMLKKATRYPL---FIIIAMS 188 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 ++ F P + + Sbjct: 189 IAFIIVITFIVPQFQTFFEQSGLELPFPTKILLW 222 >gi|330443955|ref|YP_004376941.1| general secretion pathway protein F [Chlamydophila pecorum E58] gi|328807065|gb|AEB41238.1| general secretion pathway protein F [Chlamydophila pecorum E58] Length = 391 Score = 50.9 bits (120), Expect = 9e-05, Method: Composition-based stats. Identities = 19/146 (13%), Positives = 45/146 (30%), Gaps = 4/146 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + +R+GLP+ +++A + Q + + + + + S Sbjct: 49 RIRIKNTELIVLTKQLALLLRSGLPLYESLASLRDQYQGQGIA----TLLSSFMDVLRSG 104 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + + F + + G L E L N+ +L +R ++ K+ A Sbjct: 105 GALSEAMAVHPEIFDNFYCSAVIAGENVGALEECLNNVVTVLEERAHISKKLLAALSYPL 164 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMN 153 + V + Sbjct: 165 ILLSFSIMVILFFLLGVIPSLRESFE 190 >gi|167816004|ref|ZP_02447684.1| type II secretion system protein [Burkholderia pseudomallei 91] Length = 272 Score = 50.9 bits (120), Expect = 9e-05, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66 +D+ P +D++ GL + ++ V+ + SE G + Sbjct: 118 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 177 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ R+ +++ ++ + GG + E L LR+ + + + + Sbjct: 178 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 237 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154 K + +I +L + + PG + V Sbjct: 238 KMTGVMILTLLPALF--IVTAGPGMLAV 263 >gi|26990137|ref|NP_745562.1| type II secretion system protein [Pseudomonas putida KT2440] gi|24985071|gb|AAN69026.1|AE016534_9 type II secretion pathway protein XcpS [Pseudomonas putida KT2440] Length = 403 Score = 50.9 bits (120), Expect = 9e-05, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 65/179 (36%), Gaps = 13/179 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 ++ + +R A F D + + AGLP+ DA+ + +S R ++ Sbjct: 54 LRGMAWRREAAF--DLVLFSQELSTLLNAGLPLIDALESLAEKSPAATARKVLAELVRQL 111 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + G SLS+++ + R P + S+ G L +AL + ++ K+ Sbjct: 112 YEGRSLSQALGQQPRVFPP-----LYVALVQSSERTGALGDALTRYISYRQRLDLVRQKL 166 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 S+ + G + + V + G L ++ M +G+ + Sbjct: 167 VGASVYPLLLLLVGGGVVLFLLGYVVPRFSQVFEGM-----GTELPWLSRVLMQVGLFL 220 >gi|298253207|ref|ZP_06976999.1| Flp pilus assembly protein TadB [Gardnerella vaginalis 5-1] gi|297532602|gb|EFH71488.1| Flp pilus assembly protein TadB [Gardnerella vaginalis 5-1] Length = 191 Score = 50.9 bits (120), Expect = 9e-05, Method: Composition-based stats. Identities = 21/181 (11%), Positives = 59/181 (32%), Gaps = 13/181 (7%) Query: 15 DFPNALDIIVRSVRAGLPVS----------DAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 D L ++ ++R+G + + + + + R + Sbjct: 2 DIEEVLAGMIAALRSGSTFAMIVHSDSKSQQCICSSAVNTKIIYKWLYERCFPKNR---N 58 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++++ R + + + LG ++E + + +K + ++ Sbjct: 59 MNKNQRRQLEKHMHTVSESLMASYELSNTLGCAMAECVEATAASYHAQKRAEDLRADVAA 118 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 KA+ ++ +LP + +LI G +LL + +G+ + M+ Sbjct: 119 MPKATIKLLTALPILALFAGELLGGHPILMLITTVNGWILLTIGGICYGLGLAWVSSMLQ 178 Query: 185 F 185 Sbjct: 179 I 179 >gi|167719782|ref|ZP_02403018.1| type II secretion system protein [Burkholderia pseudomallei DM98] Length = 273 Score = 50.9 bits (120), Expect = 9e-05, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66 +D+ P +D++ GL + ++ V+ + SE G + Sbjct: 119 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 178 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ R+ +++ ++ + GG + E L LR+ + + + + Sbjct: 179 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 238 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154 K + +I +L + + PG + V Sbjct: 239 KMTGVMILTLLPALF--IVTAGPGMLAV 264 >gi|168069635|ref|XP_001786522.1| predicted protein [Physcomitrella patens subsp. patens] gi|162661100|gb|EDQ48667.1| predicted protein [Physcomitrella patens subsp. patens] Length = 200 Score = 50.9 bits (120), Expect = 9e-05, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 8/159 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP----VRSEFRRVI 56 + + KR + L+ IV V AG V A+ Q + E R+I Sbjct: 43 LHTKVDKRDQDITIELAELLNKIVLLVGAGETVQKAITRCARQKEAQRDHPLYKELIRMI 102 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNM 115 + G S +S + +QEVS F+T + + + G + + AL +LSR L +++ Sbjct: 103 DDLEGGYSFQQSFENFSKRCAVQEVSAFTTAVLLNLRRGGSDFAMALNDLSRGLWEKRKA 162 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + +K + + + +V +P +M + Sbjct: 163 ITRTRGEQASSKL---VFPMMVIFMIVIVLVGTPAFMMM 198 >gi|297568749|ref|YP_003690093.1| Type II secretion system F domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296924664|gb|ADH85474.1| Type II secretion system F domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 305 Score = 50.9 bits (120), Expect = 9e-05, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 56/143 (39%), Gaps = 5/143 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQHLGLSLSESISR 71 + P ++ + AGL + A+ + + E V+ G ++ Sbjct: 157 EVPMLAQLLRVLIEAGLGLDQALLTVATDNREIIPACSQELSVVMRQVEQGAERGTTLLA 216 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M R + +QE+ ++ + GGN+ + L +L DR+ +K + + + + Sbjct: 217 MARTLDVQELQDLCEMLRQVYRYGGNVRDPLREFVALLYDRRRIKLQERVGKLAGSMTII 276 Query: 132 IIGSLPFCVSTLVYFTSPGYMNV 154 +I + +V PG++ + Sbjct: 277 VIIFFFPALLAVV--AGPGFIAI 297 >gi|167894486|ref|ZP_02481888.1| type II secretion system protein [Burkholderia pseudomallei 7894] Length = 269 Score = 50.9 bits (120), Expect = 9e-05, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66 +D+ P +D++ GL + ++ V+ + SE G + Sbjct: 115 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 174 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ R+ +++ ++ + GG + E L LR+ + + + + Sbjct: 175 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 234 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154 K + +I +L + + PG + V Sbjct: 235 KMTGVMILTLLPALF--IVTAGPGMLAV 260 >gi|327478759|gb|AEA82069.1| general secretion pathway protein F [Pseudomonas stutzeri DSM 4166] Length = 404 Score = 50.9 bits (120), Expect = 9e-05, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 49/167 (29%), Gaps = 6/167 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + V+A LP+ +A+ +S ++S V G SL+ ++ Sbjct: 65 RDLALVTRQLATLVQAALPIEEALRAAAAQSTSAKIKSMLLAVRARVMEGHSLAAALREY 124 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P + G+L L L+ R+ + K+Q + Sbjct: 125 PSAFP-----ELYRATVAAGEHAGHLGLVLDQLADYTDQRQQSRQKIQLALLYPVILMVA 179 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ + V + +A + ++ + Sbjct: 180 SLAIVVLLLGYVVPDVVKVFVNTGQELPALTRGLIATSDVVKNWGWL 226 Score = 38.2 bits (87), Expect = 0.48, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 44/130 (33%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + R+G+P+ +A+++ ++ E + G SL+ ++ + P Sbjct: 273 FASTLAILTRSGVPLVEALSIAAAVIANLRIRERVVEAAQKVREGSSLTRALDATGEFPP 332 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L + LA +R + + + E ++ + Sbjct: 333 M------MLHMIASGEKSGELDQMLARTARNQENDLAAQVSLLVGLFEPFMLVFMGAVVL 386 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 387 VIVLAILMPI 396 >gi|326403163|ref|YP_004283244.1| type II secretion system protein [Acidiphilium multivorum AIU301] gi|325050024|dbj|BAJ80362.1| type II secretion system protein [Acidiphilium multivorum AIU301] Length = 406 Score = 50.9 bits (120), Expect = 9e-05, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 57/163 (34%), Gaps = 11/163 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + + + AGL + A+ G ++ VR+ + + G +L ++ Sbjct: 67 DALADFTRELAAMLGAGLDLERALRFAAGTAATPRVRAIILAICDKVRDGAALWRALGHE 126 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P F + + G L+ L +L+ +L ++++A + A A Sbjct: 127 PHSFPP-----FYVGLVRAGEESGALAATLEDLAELLERNRSLRAAMIAGLTYPALLALA 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + L+ P ++ + + G L + IG Sbjct: 182 ATG---AIVFLLTNVLPEFVPIFAEN--GVPLPATTRLLLTIG 219 >gi|313892219|ref|ZP_07825812.1| type II secretion system protein F domain protein [Dialister microaerophilus UPII 345-E] gi|313119357|gb|EFR42556.1| type II secretion system protein F domain protein [Dialister microaerophilus UPII 345-E] Length = 392 Score = 50.9 bits (120), Expect = 9e-05, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 48/152 (31%), Gaps = 6/152 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++KR K + +GL V + + ++ + R++ + G Sbjct: 50 KLEKRVFKNYKTLYIFASEWASLIESGLSVIETLDILEMNRKEKEIKVIRKIKNSITSGF 109 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S+SES+ + E F + + G L L + + M+ K+ L Sbjct: 110 SISESLEKTS------EFPSFFISMVKIGEATGTLPLQLETAADYYKKEHKMRKKLTELF 163 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + TLV + Sbjct: 164 AYPVTVLIFSLIVLYVIMTLVIPVFYELYQSM 195 >gi|146280522|ref|YP_001170675.1| general secretion pathway protein F [Pseudomonas stutzeri A1501] gi|145568727|gb|ABP77833.1| general secretion pathway protein F [Pseudomonas stutzeri A1501] Length = 404 Score = 50.9 bits (120), Expect = 9e-05, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 49/167 (29%), Gaps = 6/167 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + V+A LP+ +A+ +S ++S V G SL+ ++ Sbjct: 65 RDLALVTRQLATLVQAALPIEEALRAAAAQSTSAKIKSMLLAVRARVMEGHSLAAALREY 124 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P + G+L L L+ R+ + K+Q + Sbjct: 125 PSAFP-----ELYRATVAAGEHAGHLGLVLDQLADYTDQRQQSRQKIQLALLYPVILMVA 179 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ + V + +A + ++ + Sbjct: 180 SLAIVVLLLGYVVPDVVKVFVNTGQELPALTRGLIATSDVVKNWGWL 226 Score = 38.2 bits (87), Expect = 0.48, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 44/130 (33%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + R+G+P+ +A+++ ++ E + G SL+ ++ + P Sbjct: 273 FASTLAILTRSGVPLVEALSIAAAVIANLRIRERVVEAAQKVREGSSLTRALDATGEFPP 332 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L + LA +R + + + E ++ + Sbjct: 333 M------MLHMIASGEKSGELDQMLARTARNQENDLAAQVSLLVGLFEPFMLVFMGAVVL 386 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 387 VIVLAILMPI 396 >gi|119503099|ref|ZP_01625184.1| general secretion pathway protein F [marine gamma proteobacterium HTCC2080] gi|119461445|gb|EAW42535.1| general secretion pathway protein F [marine gamma proteobacterium HTCC2080] Length = 396 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 51/155 (32%), Gaps = 6/155 (3%) Query: 23 IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +RAGLP+ A+ V++ +R+ +++ G SLS ++ Sbjct: 66 LSVLLRAGLPLDRALKVLIDMDGQPRMRAVLADLLKAVKGGKSLSLALQPYDEIFGP--- 122 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F + + G LS L L L K + + + + + + Sbjct: 123 --FYLSMVRAGEASGQLSAVLERLVEHLESAKATRDSIVSALIYPAILLVVAVISVVVML 180 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 V N + + G +AAA + Sbjct: 181 GFVVPQFETLFNDMGDALPGMTKAVIAAAEFIKAW 215 >gi|74316564|ref|YP_314304.1| type IV pilus assembly protein PilC [Thiobacillus denitrificans ATCC 25259] gi|74056059|gb|AAZ96499.1| type IV pilus assembly protein PilC [Thiobacillus denitrificans ATCC 25259] Length = 401 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 58/179 (32%), Gaps = 6/179 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLS 66 R D + RAG+P+ + + + R ++E G LS Sbjct: 54 RDRVTRRDLVTFCIHMRYITRAGIPLLEGLRDLRDSMDKRGFRDVLTALLEDLEGGKVLS 113 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++++ + G L L+ L+ ++ + AK + L + Sbjct: 114 QALAAHPAVFG-----AVFVHSVKAGEQTGLLDAVFERLAESLKWQEEVAAKARRLMIYP 168 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 ++G+ + + + + L+ +A + + ++ L++ F Sbjct: 169 LLVLAVVGAAILFLLIYLVPQVLTLVETMGVVLPLPTLILMAVSEAVRSYWLIGLLLAF 227 >gi|83859121|ref|ZP_00952642.1| type II secretion system protein F [Oceanicaulis alexandrii HTCC2633] gi|83852568|gb|EAP90421.1| type II secretion system protein F [Oceanicaulis alexandrii HTCC2633] Length = 411 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 53/159 (33%), Gaps = 6/159 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 DD + + AG+PV +AV ++ GQ+ V V E G LS++++ Sbjct: 70 EDDLTGVTRQLATLIDAGMPVEEAVGLVGGQADKAQVGRVLMGVREKVTEGERLSDAMAL 129 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P + + G L + L L+ L +K +V A + Sbjct: 130 YPDSFPG-----VYRAMVAAGESAGGLGQVLERLADYLEKAGALKRRVGAALIYPSVLGV 184 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + + + + + + + +A + Sbjct: 185 VALLVVCVLLVAIVPKIAEQFDTMNMTLPLITRVMIALS 223 Score = 37.4 bits (85), Expect = 0.94, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMVRYMP 77 + + AG + +A+ S + VIE G L++++ + Sbjct: 279 FARTMAILINAGAVLPEALRAARRASDNLPFQAMLGEVIEQVETGKGLADALRQA----- 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L+E + + + V +E + + Sbjct: 334 -RWFPPLMVYMVAAGERSGRLAEMFQRSAEHMEAEVDGAITVGLSLLEPGIIIAMAVIVV 392 Query: 138 FCVSTLVYFT 147 V +++ Sbjct: 393 GIVLSILLPI 402 >gi|317050497|ref|YP_004111613.1| type II secretion system F domain-containing protein [Desulfurispirillum indicum S5] gi|316945581|gb|ADU65057.1| Type II secretion system F domain protein [Desulfurispirillum indicum S5] Length = 401 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 52/167 (31%), Gaps = 12/167 (7%) Query: 5 IKKRTAKFLDDFP-----NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 +RT P L + + G+ ++ A++++ P + ++ Sbjct: 49 AGRRTPLLPRVLPATERIFFLHQLSALLGCGISLATALSMLATSMESPT---WHTILTRM 105 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 LS +S S R + +L G L E L + I+ ++ + ++ Sbjct: 106 EQDLSRGQSASNTFRSHRYAFGD-LLPFLVEVGELSGRLEEMLLRAASIMESQREFRKRL 164 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 ++ SL V P + ++ LL Sbjct: 165 GDALRYPL---IVLTSLLGAFVFAVTMIIPRFADIFARSEATLPLLT 208 Score = 40.5 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 11/125 (8%), Positives = 40/125 (32%), Gaps = 5/125 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + ++ G+P++ A+ ++ +++P+ + ++ + + Sbjct: 276 LKTMLQGGIPLAAAMEMVRDTTANPLLRQELQLAHELLNQGAPFHAALEA-----CTIFP 330 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + ++ + GG L + L + + K + A E + Sbjct: 331 GLAVQMARTGEEGGTLEQMLEKTATFYEQQAQQKLRTLAGYTEPLLLLLSGVFVLILALG 390 Query: 143 LVYFT 147 ++ Sbjct: 391 ILLPM 395 >gi|115524668|ref|YP_781579.1| type II secretion system protein [Rhodopseudomonas palustris BisA53] gi|115518615|gb|ABJ06599.1| type II secretion system protein [Rhodopseudomonas palustris BisA53] Length = 400 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 52/147 (35%), Gaps = 8/147 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 L + +R+GLP+ +A+ V S + ++ G +L +++ R Sbjct: 62 QRAITAFLGELSLVLRSGLPLDEALDVTGRDLSPRLAGTATQLRHDIVAGSTLVQALGR- 120 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 S ++ +++ G+L LA ++ + KVQ ++ Sbjct: 121 ----HKDVFSDDIIAMTRVAEVTGDLDGVLAAIAGERERGHRLNEKVQGALRYPA---FL 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDP 159 I S + + P + N+ + Sbjct: 174 ISSAVLVLLFFLVQVIPQFSNLFNDSG 200 >gi|167919153|ref|ZP_02506244.1| type II secretion system protein [Burkholderia pseudomallei BCC215] Length = 274 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66 +D+ P +D++ GL + ++ V+ + SE G + Sbjct: 120 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 179 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ R+ +++ ++ + GG + E L LR+ + + + + Sbjct: 180 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 239 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154 K + +I +L + + PG + V Sbjct: 240 KMTGVMILTLLPALF--IVTAGPGMLAV 265 >gi|296328361|ref|ZP_06870888.1| general secretion pathway protein F [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154540|gb|EFG95330.1| general secretion pathway protein F [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 346 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 66/170 (38%), Gaps = 13/170 (7%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGL 63 +K + K L + + +++GL + A+ +I+ + + E +++ + G Sbjct: 1 MKNKKEKIL----FFTNELAIMLKSGLTFTTAIEIILREEKEKNFKEVLKKIHKNLIAGK 56 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S+ ES + + ++ G+++E L ++S+ L + K+ + Sbjct: 57 SIFESFKNFDKIFGN-----TYLYMLKIGEVSGSIAERLEDISKSLEFDLANQKKLGGIL 111 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + +I V+ L+ F P ++ + + L+ F+ Sbjct: 112 VYPI---VVISLTLIIVTFLLTFILPNFITIFEENQVELPLITRILLFIS 158 >gi|261402163|ref|YP_003246387.1| Type II secretion system F domain protein [Methanocaldococcus vulcanius M7] gi|261369156|gb|ACX71905.1| Type II secretion system F domain protein [Methanocaldococcus vulcanius M7] Length = 301 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 72/155 (46%), Gaps = 1/155 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH-LG 62 L + + ++ P AL I++ ++ +G +++A+ +V + V + F++V+ Sbjct: 77 LYENKMETLENNIPQALYIMILTLESGRSINEALEEVVKNNIKEVSNVFKKVLYLMEKQK 136 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +S E+++ + + + + ++ + GGNL+++L L++ L D + K ++ ++ Sbjct: 137 ISFEEAMTIVSNLYDSKVLKMLARIMIENRKYGGNLADSLRVLAKTLEDFRLYKRQLLSV 196 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + A +II + ++ ++ Sbjct: 197 TASGLAVGFIILCGVIPAVAALLGAYLITISKMMG 231 >gi|260905508|ref|ZP_05913830.1| hypothetical protein BlinB_09270 [Brevibacterium linens BL2] Length = 225 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 61/167 (36%), Gaps = 4/167 (2%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 A++ ++ G+ +A + Q + + R + + G +++ + + Sbjct: 59 AVENCAHLLKVGMTPQAVMATLSRQ-NAQLAPISRAISLGEEPGRAIATRGAELP-GAAA 116 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + S+V +V + G ++ + +R R + + KA+ ++ LP Sbjct: 117 EVFAGMSSVWTVSERSGAPAADMILRYARAQRSALDADRERHIAMAGPKATVRVLSWLPL 176 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM-RLMIN 184 L L + G + +G L+G M R+M+ Sbjct: 177 IGVGLGLLIGVKPAE-LFSGLPGQLSIGGGIVLYLLGRWWMRRMMVR 222 >gi|315649137|ref|ZP_07902228.1| Type II secretion system F domain protein [Paenibacillus vortex V453] gi|315275453|gb|EFU38810.1| Type II secretion system F domain protein [Paenibacillus vortex V453] Length = 290 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 69/151 (45%), Gaps = 7/151 (4%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIETQHLGLS 64 R + + + P L+ IV V AG V AV V + P+ +E +R++ G Sbjct: 141 REQEIIMELPELLNKIVLLVGAGETVQRAVIHCVERNKDMNHPLYAELKRMVLEWEGGHP 200 Query: 65 LSESISRMVRYMPLQEVS-FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++ + + +QEVS F +TV+ + G + AL +LSR+L +++ + + Sbjct: 201 FQQAFEQFNKRCGVQEVSIFTTTVLLNFRRGGNDFVMALRDLSRVLWEKRKAIGRTRGEQ 260 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 +K ++ + + +V +P +M + Sbjct: 261 ASSKL---VLPMVVIFMIVIVLLGAPAFMMM 288 >gi|296436104|gb|ADH18278.1| general secretion pathway protein F [Chlamydia trachomatis G/9768] gi|296437964|gb|ADH20125.1| general secretion pathway protein F [Chlamydia trachomatis G/11074] gi|297140465|gb|ADH97223.1| general secretion pathway protein F [Chlamydia trachomatis G/9301] Length = 391 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 24/193 (12%), Positives = 59/193 (30%), Gaps = 15/193 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 ++ + ++ + +V +R+G+ + DA+ + Q + ++E Sbjct: 42 IRKVRERNYRVTTTELVIFTKQLVLLLRSGISLYDALTSLRDQYQGRALAGVLTSLMEAL 101 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SE+++R F + GNL AL N+ ++L +++ + + Sbjct: 102 RSGGVFSEALARFP-----HIFDSFYQNSVRSGESIGNLEGALMNIIKVLEEKEKLSKSL 156 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG---------VAAA 170 A ++ V T + + Sbjct: 157 AAALSYPAILLVFSCAVVVFFLIGVIPTLKETFEDIEMTRLTKAVFSCSTWFCRYKFLVL 216 Query: 171 FMLIGIMVMRLMI 183 IG + ++ Sbjct: 217 LGGIGGAISLRIV 229 >gi|258650977|ref|YP_003200133.1| Flp pilus assembly protein TadB-like protein [Nakamurella multipartita DSM 44233] gi|258554202|gb|ACV77144.1| Flp pilus assembly protein TadB-like protein [Nakamurella multipartita DSM 44233] Length = 270 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 47/124 (37%) Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + S + + P ++F S+ + + G + ++ L D+ Sbjct: 145 MRTVDESPARAARSPDDPAGVLAFLSSGWLLSRRHGVAFGRVVTAVADELSDQLAADQTR 204 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A + S +++ +LP L + VL+ P G++LL + A + G++ Sbjct: 205 TAQLAGPRMSGYVMAALPLMGVVLGAGMGVDPVAVLLGSPLGNLLLVIGVALLCAGLLWS 264 Query: 180 RLMI 183 ++ Sbjct: 265 ARIV 268 >gi|167582055|ref|ZP_02374929.1| hypothetical protein BthaT_28187 [Burkholderia thailandensis TXDOH] Length = 278 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66 +D+ P +D++ GL + ++ V+ + SE G + Sbjct: 124 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTRE 183 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ R+ +++ ++ + GG + E L LR+ + + + + Sbjct: 184 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 243 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154 K + +I +L + + PG + V Sbjct: 244 KMTGVMILTLLPALF--IVTAGPGMLAV 269 >gi|116694144|ref|YP_728355.1| flp pilus assembly protein TadC [Ralstonia eutropha H16] gi|113528643|emb|CAJ94990.1| flp pilus assembly protein TadC [Ralstonia eutropha H16] Length = 345 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 65/147 (44%), Gaps = 5/147 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR---SEFRRVIETQHLGLSLSES 68 D+ P +D++ GL + ++ VIV + +R E R + G S ++ Sbjct: 191 VDDELPVLIDMLRLLQGVGLSIDQSLQVIVAEFGSMLRVLGPELARANQQFASGRSREQT 250 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + R+ R +++ T+++ + GG + E L +++ + + K + + K Sbjct: 251 LLRIGRLFDSEDLKSLITLLTQVDKHGGAVQEPLRQFGLRMQEARKSRLKDEIGRLTVKM 310 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVL 155 +A ++ SL + L PG++ V+ Sbjct: 311 TAVMVVSLLPVLLIL--TAGPGFLGVI 335 >gi|116619189|ref|YP_821345.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116222351|gb|ABJ81060.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 402 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 7/151 (4%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 V +RAGLP+ A+ ++ + + + + V + G LS++ Sbjct: 71 QQFVTLIRAGLPILKALDLLAERLTDPKLGPYVKSVRDEVRNGSLLSDAFRLQG------ 124 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + G+L+E L + +K KV M ++ L Sbjct: 125 IFPKMYVTSVMAGEKSGSLTEVLDRYVTYQKMSLAVKKKVMVSLMYPAVLIVLVALLMVF 184 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + T V T N + + +A Sbjct: 185 LVTYVVPTFANLYNSMQAKLPMMTVYLIAIG 215 Score = 41.3 bits (95), Expect = 0.066, Method: Composition-based stats. Identities = 19/135 (14%), Positives = 42/135 (31%), Gaps = 7/135 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 I+ + G+P+ A+ + ++ + G LS S+S+ Sbjct: 267 QVAQLARILSTLLVGGIPLVQAMETAADSLNTPLLKRAVDAAGKNVREGQPLSGSLSQSK 326 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + P + + + G L L +++ + N K +E + Sbjct: 327 LFPP------LAIDMIEVGESTGALPSMLNSVAEFFEEDVNTKMAATLSLIEPAIMIVMG 380 Query: 134 GSLPFCVSTLVYFTS 148 G + F + L Sbjct: 381 GVVAFVLIALYLPIF 395 >gi|167817508|ref|ZP_02449188.1| type IV pilus biogenesis protein PilC [Burkholderia pseudomallei 91] Length = 247 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 18/153 (11%), Positives = 42/153 (27%), Gaps = 6/153 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AGL ++ ++ ++ + + + G S ++ R R Sbjct: 53 FARQLAGLLHAGLALAPSLELLAQATQRSEMPRVAAGLAREIVAGRQFSAALRRYPRQFD 112 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 F + + G L+ L L+ A+V+ A ++ Sbjct: 113 P-----FFCQLVAVGETAGALAAVLTRLADDRERAAAQYARVKGALAYPAAVLLFALAIT 167 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + V T +A + Sbjct: 168 AALLVWVVPTFEQIFAGFGAPLPAPTRFVLALS 200 >gi|226325183|ref|ZP_03800701.1| hypothetical protein COPCOM_02975 [Coprococcus comes ATCC 27758] gi|225206531|gb|EEG88885.1| hypothetical protein COPCOM_02975 [Coprococcus comes ATCC 27758] Length = 303 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 65/159 (40%), Gaps = 2/159 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQ 59 + H K R + P AL+++ SV AG+ V + + P+ EF R Sbjct: 143 LSHAGKTRGEEIDRYLPPALELLTISVSAGVLVERGFRQLAENKALGPLADEFARTDMEI 202 Query: 60 -HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 HLG+S +++ M R + +F + ++ G ++S L + +++ R + Sbjct: 203 SHLGVSRVDALDHMRRRCDSPLMGYFCAALIEATRKGTSISGVLESQAKLARKARYDALT 262 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 Q + K + ++ L + ++ ++L+ Sbjct: 263 AQINKLSTKMAVPLVFFLIAVLVLILPPLIIPTASMLME 301 >gi|225850530|ref|YP_002730764.1| putative type II secretion system protein [Persephonella marina EX-H1] gi|225645276|gb|ACO03462.1| putative type II secretion system protein [Persephonella marina EX-H1] Length = 406 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 24/193 (12%), Positives = 64/193 (33%), Gaps = 18/193 (9%) Query: 5 IKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLG 62 I+K + L+ + V++GLP++ + + + +P E + G Sbjct: 54 IRKYIYRIKRQEIIEVLENLHLIVKSGLPINTGLMDLAEDAENPSLKEMLFDMAFKIQAG 113 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +LS++ S + + G+L + L + + L+ +++KAK + Sbjct: 114 ETLSQAAES-----YRDIFSDVVISLFKIGEETGSLDKTLKDAAEHLKKIEDLKAKTKQA 168 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTS-----------PGYMNVLINDPRGHMLLGVAAAF 171 + + + + V P ++ G+ Sbjct: 169 LIYPAFAFFSVLGAMIFWLVYVLPKIIDAFKDFNIELPATTVFIMKTSDFLRSYGIFLVV 228 Query: 172 MLIGIMVMRLMIN 184 ++ + ++ M+ Sbjct: 229 VIFILFILLQMLR 241 Score = 35.9 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 7/134 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMV 73 ++ + + ++AGLP+ A+ ++ + V R LG S S+S+ + Sbjct: 269 NYAFFAEYVRLMIQAGLPLYQALNIMENAIRNYVFKTAIRNSRNEIELGRSFSDSLKK-- 326 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + + G L E L +S ++ ++ A +E + Sbjct: 327 ----ENVFSPLIIRMISIGEQTGALDEQLDYISNYYYNKVEYISQNIAKMIEPIIIGVVG 382 Query: 134 GSLPFCVSTLVYFT 147 G + + + Sbjct: 383 GFMLIVMLGFIGPI 396 >gi|320533996|ref|ZP_08034554.1| type II secretion system F domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133784|gb|EFW26174.1| type II secretion system F domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 291 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 69/184 (37%), Gaps = 6/184 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVR---AG-LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 + K AL S+R AG + + A+ V ++ +R + + + + + Sbjct: 92 KQEKLAAAKIEALATWSESLRDTIAGAVGLEQAIPATVYAAAPVLREDLALLADRMRVRV 151 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L ++ + + + + + G L + L L+ R +M+ +V A Sbjct: 152 PLPTALRQFADDLDDPTADLIVSALIMNARLRGPGLRQLLGALADTARSELDMRQRVSAS 211 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + SA I+ V + + ++ + +G ++L V A +G++ MR + Sbjct: 212 RAGTRRSAQIVVIFSIVVMLGLAVFNRSFVAP-YSSVQGQLVLVVVVALFAVGMLWMRRL 270 Query: 183 INFD 186 Sbjct: 271 AGVR 274 >gi|297243109|ref|ZP_06927047.1| hypothetical protein GVAMD_1121 [Gardnerella vaginalis AMD] gi|296889320|gb|EFH28054.1| hypothetical protein GVAMD_1121 [Gardnerella vaginalis AMD] Length = 191 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 21/181 (11%), Positives = 60/181 (33%), Gaps = 13/181 (7%) Query: 15 DFPNALDIIVRSVRAGLPVS----------DAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 D L ++ ++R+G + + + + + R + + Sbjct: 2 DIEEVLAGMIAALRSGSTFAMIVHSDSKSQQCICSSAVNTKIIYKWLYERCFPKKR---N 58 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++++ R + + + LG ++E + + +K + ++ Sbjct: 59 MNKNQRRQLEKHMHTVSESLMASYELSNTLGCAMAECVEATAASYHAQKRAEDLRADVAA 118 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 KA+ ++ +LP + +LI G +LL + +G+ + M+ Sbjct: 119 MPKATIKLLTALPILALFAGELLGGHPILMLITTVNGWILLTIGGICYGLGLAWVSSMLQ 178 Query: 185 F 185 Sbjct: 179 I 179 >gi|291537887|emb|CBL10998.1| hypothetical protein RO1_01760 [Roseburia intestinalis XB6B4] Length = 309 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 63/185 (34%), Gaps = 2/185 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ AL II + + +V + + PV++ F + Sbjct: 120 IRLTASHFKKDVSSKLETALSIITTAYLRSEDILTSVEENLEYLNPPVKTVFADFVSRIR 179 Query: 61 L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 L L ++ + + + + +L L + L D + + A++ Sbjct: 180 LIDPDLEAALEELKGKIENDVFMEWVDALKSCL-YDRSLKTTLTPIVAKLSDMRIVNAEL 238 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + L E + + L L+YF + + + L++ G ++L V A + + + Sbjct: 239 EYLVFEPRKEFITMVVLAVGNIPLLYFLNQSWYDTLMHTIPGQIMLAVTGAIIFVSTACV 298 Query: 180 RLMIN 184 + Sbjct: 299 IKLTK 303 >gi|118579254|ref|YP_900504.1| type II secretion system protein [Pelobacter propionicus DSM 2379] gi|118501964|gb|ABK98446.1| type II secretion system protein [Pelobacter propionicus DSM 2379] Length = 414 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 18/139 (12%), Positives = 47/139 (33%), Gaps = 6/139 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 D +RAG + A+ ++ +R +++ + G S S +++ Sbjct: 77 DLVIFFRQTAMMLRAGYTLVTALDASSEMTAKLRLRRTIKKMCDEIRKGGSFSGTLAGEK 136 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + + GNL + L L+ + K++K ++ A + Sbjct: 137 KIFTP-----MVSNLIASGEKSGNLDDILDRLADSIERSKDIKRQLVAAMFYPLFVLLVS 191 Query: 134 GSLPFCVSTLVYFTSPGYM 152 + + V ++ Sbjct: 192 IGVVIFLVLGVIPRFATFL 210 >gi|167561752|ref|ZP_02354668.1| hypothetical protein BoklE_04253 [Burkholderia oklahomensis EO147] Length = 234 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66 +D+ P +D++ GL + ++ V+ + SE G + Sbjct: 80 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTRE 139 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ R+ +++ ++ + GG + E L LR+ + + + + Sbjct: 140 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 199 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154 K + +I +L + + PG + V Sbjct: 200 KMTGVMIVTLLPALF--IVTAGPGMLAV 225 >gi|226944937|ref|YP_002800010.1| type II secretion system protein F [Azotobacter vinelandii DJ] gi|226719864|gb|ACO79035.1| Type II secretion system protein F [Azotobacter vinelandii DJ] Length = 396 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 24/177 (13%), Positives = 58/177 (32%), Gaps = 12/177 (6%) Query: 1 MKHLIKKR----TAKFLDDFPNAL--DIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFR 53 + ++R + + FP L + + AGL + DA+ + +S R Sbjct: 39 LSLRAERRWSPLRWRRREAFPLVLFSQELTTLLNAGLALIDALESLAEKESDAQARKILA 98 Query: 54 RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 ++ + G SLS+++ P + S+ G + +AL Sbjct: 99 DLVRLLYEGKSLSQALGEFPAVFPP-----LYVALVQSSEKTGAVGDALGRYVAYRTRMD 153 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 ++ K+ + S+ + + + V L ++ + ++ Sbjct: 154 EVRQKIVSASVYPLLLLVVGNGVLLFLIGYVVPRFSLVFEGLGSNLPWLSRVLLSVG 210 >gi|33599769|ref|NP_887329.1| putative type II secretion system protein [Bordetella bronchiseptica RB50] gi|33567366|emb|CAE31279.1| putative type II secretion system protein [Bordetella bronchiseptica RB50] Length = 417 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 11/160 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSLSESIS 70 + L + +G+P+ +AV + ++ V RR++E G +SE++ Sbjct: 70 KELSGMLRDLAVMTGSGIPLLEAVRTVSEENASKRSNVARVGRRLLEDLDAGAPISEAVG 129 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 R P + + G++ L + L MKA + + Sbjct: 130 RQPDIFP-----ETVRNLILIGDETGSMDRMLLESAEHLERIAAMKADTRQALIYPA--- 181 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 ++ ++ +++ P + + L +A Sbjct: 182 FVFLAIFGAAGFWIHYVIPNLVGLFQQMNAKLPALTIAVL 221 >gi|219848635|ref|YP_002463068.1| hypothetical protein Cagg_1731 [Chloroflexus aggregans DSM 9485] gi|219542894|gb|ACL24632.1| conserved hypothetical protein [Chloroflexus aggregans DSM 9485] Length = 308 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 23/193 (11%), Positives = 66/193 (34%), Gaps = 11/193 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHL-- 61 ++ + + A+ + + GL + A ++ P+R E+ +I Q Sbjct: 115 AQRYNRQLERELTPAIGRLSALLSGGLGLRTAFDRLLADMPSGPLRDEWSWLIRQQGALL 174 Query: 62 ----GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +L + I+ + + ++V + +L + + Sbjct: 175 ADGSIATLRQVIAALAGQTLSVRHATLLNHLAVAADQPQDLQARRCAAAYAALQASERRR 234 Query: 118 KVQ-ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH---MLLGVAAAFML 173 + + + S +G ++ + T + V + P G +++ +A A + Sbjct: 235 EEALTELAQMRYSGLAVGGAGVLMAVYLGATQWERVRVAYSTPLGMVFAVIVSLALAAPI 294 Query: 174 IGIMVMRLMINFD 186 IG + + + + + Sbjct: 295 IGGIWLSRVEDVE 307 >gi|51597377|ref|YP_071568.1| general secretion pathway protein F. [Yersinia pseudotuberculosis IP 32953] gi|51590659|emb|CAH22301.1| Putative general secretion pathway protein F [Yersinia pseudotuberculosis IP 32953] Length = 400 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 55/183 (30%), Gaps = 19/183 (10%) Query: 5 IKKRTAKFLD----------DFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFR 53 IKKR F D I V A +P+ + + + Q S + + Sbjct: 42 IKKRILLFNKYVVKKNSNKTDLVLITRQIATLVNASMPLDEVLDIFGKQNSKSKMIEIIQ 101 Query: 54 RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 R+ G S ++++S S + ++ G+L L L+ + + Sbjct: 102 RIRVNIQEGHSFADALSPFPA-----VFSPLYKTMVTAGEVSGHLGLVLVRLADHIEQTQ 156 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 ++ K+ + ++ + L+ P + L + Sbjct: 157 KIQRKIIQALIYP---CVLVLISLSVIIILLTAVVPNIVEQFSFSETALPLSTKVLMILS 213 Query: 174 IGI 176 I Sbjct: 214 YSI 216 >gi|291521740|emb|CBK80033.1| Bacterial type II secretion system protein F domain [Coprococcus catus GD/7] Length = 491 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 51/137 (37%), Gaps = 10/137 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---------SDPVRSE 51 +K +++R + L +P + ++ + AG+ V + ++ + D + E Sbjct: 331 LKKRLEERNEQLLYAYPGFVHRMILMLGAGMTVRRSWNRLLDDNERLDSGHLEEDWLYRE 390 Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANL-SRILR 110 + G+ ++ + M LQ+ FS ++ + G +AL + Sbjct: 391 MKYTRIQMESGVPEIQAYLEFGQRMELQQYKKFSQLLIQYIKRGSKGMQALMQQEAAEAE 450 Query: 111 DRKNMKAKVQALSMEAK 127 ++ AK + K Sbjct: 451 KQRRDLAKQLGETAGTK 467 >gi|238750504|ref|ZP_04612004.1| Type II secretion system protein [Yersinia rohdei ATCC 43380] gi|238711152|gb|EEQ03370.1| Type II secretion system protein [Yersinia rohdei ATCC 43380] Length = 374 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 56/185 (30%), Gaps = 23/185 (12%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + + ++AGLP+ +++ ++ + P + + + G SLSE ++ Sbjct: 34 ERLIVVTRQLATLLQAGLPLVNSLRMLAKEMDALPWQCLLQEISIQVSQGQSLSEVMALY 93 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P + ++ GNL + L++ ++ ++ KV I Sbjct: 94 PHAFP-----RLYPPVIAMGEMTGNLEQCCLKLAQHQEQQQKLQKKVVKALKYPVFVCII 148 Query: 133 IGSLPFCVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGI 176 + + +V G + + + IG Sbjct: 149 ALVVSIVMLVMVLPEFAQIYQSFDTPLPALTATLLLMSEYLTSYGVFI-ALLLISISIGY 207 Query: 177 MVMRL 181 MR Sbjct: 208 QYMRR 212 >gi|121607680|ref|YP_995487.1| type II secretion system protein [Verminephrobacter eiseniae EF01-2] gi|121552320|gb|ABM56469.1| type II secretion system protein [Verminephrobacter eiseniae EF01-2] Length = 416 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 18/157 (11%), Positives = 49/157 (31%), Gaps = 6/157 (3%) Query: 23 IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +RAGL + +A+ V++ V + + +++ G LS +++ Sbjct: 86 LAIMLRAGLALDNALRVLIDMSHKPSVTALVQALLDAVKGGTPLSRALAA-----HGPLF 140 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F + + G +S L L + ++ ++ V + ++ + + Sbjct: 141 GDFYINMVRSGEASGQMSAVLDRLVEHMERQRALRDSVISATIYPAILLAVALLSLVAML 200 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 V + + L + Sbjct: 201 GFVVPQFEKLFTDMGDALPLPTRLVMGLGQAFTDYGW 237 >gi|307328261|ref|ZP_07607439.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] gi|306886095|gb|EFN17103.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] Length = 272 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 45/156 (28%), Gaps = 5/156 (3%) Query: 7 KRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +R P A D++ + AG A + G PV + LG Sbjct: 120 RRLEALAARQIPLAADLLTACLAAGAGPRKAAEAVGGSLGGPVGERLAQTAAELRLGAEP 179 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK-NMKAKVQALSM 124 + + R+ Q ++ + G E ++ L+ R + K + Sbjct: 180 AHAWGRIGALPGAQGLAR---ALERAGTTGAPAVEPVSRLAAECRAEQGRAAMKRADRTG 236 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 + LP + + G L+ D Sbjct: 237 VLVNAPLAGCFLPAFLLVGLAPVMIGLARGLMGDGP 272 >gi|291459838|ref|ZP_06599228.1| putative bacterial type II secretion system protein F domain protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291417628|gb|EFE91347.1| putative bacterial type II secretion system protein F domain protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 285 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 48/130 (36%), Gaps = 1/130 (0%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KRTA + P + + V +G+ + DA +I S + R E G S + Sbjct: 138 KRTADCELELPEVVSTMAILVNSGMVLRDAWRMIGESSEGAIYKLMREAGENMQNGYSDA 197 Query: 67 ESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++I R E+ F++ + + G L LA S L K K Sbjct: 198 DAILLFGRATDSPEIIKFTSALLQSMEKGGSELPLFLAKESSELWSSKRQKTLQLGEKAS 257 Query: 126 AKASAWIIGS 135 AK A I+ Sbjct: 258 AKLLAPIMLV 267 >gi|167842247|ref|ZP_02468931.1| General secretion pathway protein F [Burkholderia thailandensis MSMB43] Length = 167 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/144 (11%), Positives = 43/144 (29%), Gaps = 6/144 (4%) Query: 36 AVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQL 94 ++AV+ Q+ + VR + G S + ++ + R + + + Sbjct: 1 SLAVLSEQAEREYVRELMAAIRAEVVGGHSFANALGQHPR-----DFPDIYRALVAAGEH 55 Query: 95 GGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 G L L+ L+ + ++ K+ I + + + V Sbjct: 56 TGKLGVVLSRLADYIEQSNALRQKILLAFTYPAVVTLIAFGIVTFLLSYVVPQVANVFTS 115 Query: 155 LINDPRGHMLLGVAAAFMLIGIMV 178 ++ +A + + Sbjct: 116 TKQPLPTLTVVMLALSDFVRRWWW 139 >gi|331269420|ref|YP_004395912.1| putative pilin biogenesis protein [Clostridium botulinum BKT015925] gi|329125970|gb|AEB75915.1| probable pilin biogenesis protein, putative [Clostridium botulinum BKT015925] Length = 396 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 54/151 (35%), Gaps = 6/151 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHL 61 ++IK D + ++AG+ + A+ V+ Q + + R + + Sbjct: 49 NIIKLFKKVTSMDIGVMCKQLGELLKAGVNIETALEVLENQKINYLIRDSLKIIRRDIER 108 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G +L +SI++ + P F + + GNL L++ D+ MK K++ Sbjct: 109 GRTLFQSINKFSKIYP-----EFMRQMIFIGEKSGNLDNIFIKLAKYYMDQHRMKKKIKN 163 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 M + + ++ + Sbjct: 164 AIMYPLCVLIMTIIVTLFITFRIIPKFVDNF 194 >gi|19705384|ref|NP_602879.1| general secretion pathway protein F [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713371|gb|AAL94178.1| General secretion pathway protein F [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 346 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 66/170 (38%), Gaps = 13/170 (7%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGL 63 +K + K L + + +++GL + A+ +I+ + D E +++ + G Sbjct: 1 MKNKKEKIL----FFTNELSIMLKSGLTFTTAIEIILREEKDKNFKEVLKKIHKNLIAGK 56 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S+ ES + + ++ G+++E L ++S+ L + K+ + Sbjct: 57 SIFESFKNFDKIFGN-----TYLYMLKIGEVSGSIAERLEDISKSLEFDLANQKKLGGIL 111 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + II V+ L+ F P ++ + + L+ F+ Sbjct: 112 VYPI---VIISLTLIIVTFLLTFILPNFITIFEENQVELPLITRILLFIS 158 >gi|188592036|ref|YP_001796634.1| type II secretion system protein [Cupriavidus taiwanensis LMG 19424] gi|170938410|emb|CAP63397.1| Type II secretion system protein [Cupriavidus taiwanensis LMG 19424] Length = 356 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 65/147 (44%), Gaps = 5/147 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR---SEFRRVIETQHLGLSLSES 68 D+ P +D++ GL + ++ VIV + +R E R + G S ++ Sbjct: 202 VDDELPVLIDMLRLLQGVGLSIDQSLQVIVAEFGSMLRVLGPELARANQQFASGRSREQT 261 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + R+ R +++ T+++ + GG + E L +++ + + K + + K Sbjct: 262 LLRIGRLFDSEDLKSLITLLTQVDKHGGAVQEPLRQFGLRMQEARKSRMKDEIGRLTVKM 321 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVL 155 +A ++ SL + L PG++ V+ Sbjct: 322 TAVMVVSLLPVLLIL--TAGPGFLGVI 346 >gi|171186311|ref|YP_001795230.1| type II secretion system protein [Thermoproteus neutrophilus V24Sta] gi|170935523|gb|ACB40784.1| type II secretion system protein [Thermoproteus neutrophilus V24Sta] Length = 262 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 67/193 (34%), Gaps = 10/193 (5%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHL 61 HL+ R + F ++F L +++ + AG+P+ AV + + + E + Sbjct: 70 HLVSARRSHFENNFVYTLSVLLPLLAAGVPLGRAVTRLAEVEDDRYIARELALAAREMVV 129 Query: 62 GL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 S E++ +P V++ +++ + L + K ++A+ Sbjct: 130 MGSSPEEALRNSAARVPSPTYRETVEVLTKAARITQRVDLVLLARLDWMLRAKQVRAQSL 189 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV-----LINDPRGHMLLGVAAAFMLIG 175 S+ +++ + + + S + L DP M L ++G Sbjct: 190 VRSLSLMFEVFVVAVMLLPIMVYIVALSFSPLGALQIGGLALDPLTLMALIGLVYTPVVG 249 Query: 176 ---IMVMRLMINF 185 +V + Sbjct: 250 VVFYLVFDSITKI 262 >gi|314922440|gb|EFS86271.1| type II secretion system F domain protein [Propionibacterium acnes HL001PA1] gi|314965661|gb|EFT09760.1| type II secretion system F domain protein [Propionibacterium acnes HL082PA2] gi|314982825|gb|EFT26917.1| type II secretion system F domain protein [Propionibacterium acnes HL110PA3] gi|315091476|gb|EFT63452.1| type II secretion system F domain protein [Propionibacterium acnes HL110PA4] gi|315094230|gb|EFT66206.1| type II secretion system F domain protein [Propionibacterium acnes HL060PA1] gi|315104882|gb|EFT76858.1| type II secretion system F domain protein [Propionibacterium acnes HL050PA2] gi|327329209|gb|EGE70969.1| putative bacterial type II secretion system protein F domain protein [Propionibacterium acnes HL103PA1] Length = 147 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 4/140 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 P AL ++ ++ AGLP+ AV + P + RR+ + G+ S + + + Sbjct: 7 AQLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVPDSRAWNDLA 66 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK-ASAWI 132 ++ + +S G +SE L+ + L+ KA+ +A + Sbjct: 67 ---SVEVWRDPAQDVSRAVNSGEGISELLSAHAAQLQVAAAEKAEKKARKAGVDAIGPLV 123 Query: 133 IGSLPFCVSTLVYFTSPGYM 152 LP + V G + Sbjct: 124 CCHLPAFLLVGVVPIIAGMV 143 >gi|282850373|ref|ZP_06259752.1| type II secretion system F domain protein [Veillonella parvula ATCC 17745] gi|282579866|gb|EFB85270.1| type II secretion system F domain protein [Veillonella parvula ATCC 17745] Length = 335 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/159 (13%), Positives = 54/159 (33%), Gaps = 13/159 (8%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + + +G+P+ A+ ++ + + IE + + + Sbjct: 4 DVTYQLGLLIESGVPLRRALQLLCQGKRGLLYTALYESIERGQT----------LSQALR 53 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + S + + + G L E+L +SR + +K KV + +++ + Sbjct: 54 SEGCSPIALALLESGEAAGTLGESLQYISRHYDWERQLKQKVISAISYPL---FLLLMMN 110 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + F P + NV L+ A + G+ Sbjct: 111 IFFLVTILFIIPSFENVFTTMHITLPLMTRALFVLGQGL 149 >gi|257139285|ref|ZP_05587547.1| hypothetical protein BthaA_08776 [Burkholderia thailandensis E264] Length = 253 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66 +D+ P +D++ GL + ++ V+ + SE G + Sbjct: 99 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTRE 158 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ R+ +++ ++ + GG + E L LR+ + + + + Sbjct: 159 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 218 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154 K + +I +L + + PG + V Sbjct: 219 KMTGVMILTLLPALF--IVTAGPGMLAV 244 >gi|94312590|ref|YP_585799.1| type II secretion system protein, transmembrane [Cupriavidus metallidurans CH34] gi|93356442|gb|ABF10530.1| type II secretion system protein, transmembrane [Cupriavidus metallidurans CH34] Length = 369 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 64/145 (44%), Gaps = 5/145 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR---SEFRRVIETQHLGLSLSESIS 70 D+ P +D++ GL + ++ +IV + ++ E +R + G S +++ Sbjct: 217 DELPILIDMLRLLQGVGLSIDQSLQIIVTEFGSMLQVLGPELQRSNQQFASGRSREQTLL 276 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 R+ + +++ T+++ + GG + E L L+ + + K + + K + Sbjct: 277 RIGKLFDDEDLKGLITLLTQVDRHGGAVQEPLRQFGERLQIARKARMKDKIGRLTVKMTG 336 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ SL + L PG++ V+ Sbjct: 337 VMVVSLLPVLLIL--TAGPGFLGVM 359 >gi|289191837|ref|YP_003457778.1| Type II secretion system F domain protein [Methanocaldococcus sp. FS406-22] gi|288938287|gb|ADC69042.1| Type II secretion system F domain protein [Methanocaldococcus sp. FS406-22] Length = 576 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/170 (11%), Positives = 60/170 (35%), Gaps = 8/170 (4%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 + +P L+ + +VR+G+ + A+ V + P+ +++ G ++E Sbjct: 371 NQKERYYPIFLNDLTMAVRSGMDIIRAMQVCARTNYGPLTKIIKKMAIQMSWGRPVNEVF 430 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + + R ++++ + GG++ + L +++ MK ++ A Sbjct: 431 ADLERTERSLIAKRIASILKECAVSGGDIKDILTSVTVHAYRLSEMKREISARQFIYVVV 490 Query: 130 AWIIGSLPFCV-STLVYFTSPGYMNV-------LINDPRGHMLLGVAAAF 171 ++ L +++ P + + +L + Sbjct: 491 IYLSFFLYLGTSYIMIHSLLPTLLKNVQGLGIEFYKNYLFQGILIYSIFS 540 >gi|118619399|ref|YP_907731.1| hypothetical protein MUL_4231 [Mycobacterium ulcerans Agy99] gi|118571509|gb|ABL06260.1| conserved hypothetical membrane protein [Mycobacterium ulcerans Agy99] Length = 264 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 51/141 (36%), Gaps = 1/141 (0%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 AL+I+V +R G A V ++ PV + R V LG ++ + R Sbjct: 93 ALEAALEILVGELRVGAHPVRAFGVAADETDGPVAAAMRGVAAHARLGADVTGGLRAAAR 152 Query: 75 YMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 L + + S G ++ + R + R+ AKV A A+ASA I+ Sbjct: 153 RSALPAHWERLAVYWQLASDHGLAIATLMRAAQRDVAQRQRFSAKVSAGLAGARASAGIL 212 Query: 134 GSLPFCVSTLVYFTSPGYMNV 154 LP L + Sbjct: 213 AGLPVLGVVLGQLIGAQPLAF 233 >gi|145597999|ref|YP_001162075.1| general protein secretion protein [Yersinia pestis Pestoides F] gi|270487405|ref|ZP_06204479.1| type II secretion system F domain protein [Yersinia pestis KIM D27] gi|145209695|gb|ABP39102.1| general protein secretion protein [Yersinia pestis Pestoides F] gi|270335909|gb|EFA46686.1| type II secretion system F domain protein [Yersinia pestis KIM D27] Length = 338 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/158 (12%), Positives = 50/158 (31%), Gaps = 9/158 (5%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 I V A +P+ + + ++ Q S + +R+ G S ++++S Sbjct: 5 TRQIATLVNASMPLDEVLDIVGKQNSKSKMIEIIQRIRVNIQEGHSFADALSPFPA---- 60 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 S + ++ G+L L L+ + + ++ K+ + ++ Sbjct: 61 -VFSPLYKTMVTAGEVSGHLGLVLVRLADHIEQTQKIQRKIIQALIYP---CVLVLISLS 116 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + L+ P + L + I Sbjct: 117 VIIILLTAVVPNIVEQFSFSETALPLSTKVLMILSYSI 154 >gi|290512546|ref|ZP_06551912.1| protein transporter HofC [Klebsiella sp. 1_1_55] gi|289774887|gb|EFD82889.1| protein transporter HofC [Klebsiella sp. 1_1_55] Length = 401 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/158 (12%), Positives = 54/158 (34%), Gaps = 6/158 (3%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + + ++AGLP++D ++++ Q ++ + G++ + ++++ + Sbjct: 61 SETIRQLATLLQAGLPLADGLSLLAQQQPHPQWQALLESLGRELAQGVAFTTALAQWPQA 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L L+ ++++ + KV+ + Sbjct: 121 FPP-----LYLAMISTGELTGKLDICCQQLANQQQEQQRLAGKVKKALRYPLIVLALALL 175 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + + V + VAA ML Sbjct: 176 VVLGMLYFVLPEFTAIYQTFSTPLPLLTRMVVAAGDML 213 Score = 38.2 bits (87), Expect = 0.54, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 41/136 (30%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 I+ + AG+ + + S R + G + +++SR Sbjct: 261 QQLSLIFTILALTQSAGISFLQGLQSVEATLSCPLWRQRLAQARTLIAQGEPIWQALSRC 320 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P + + G L + L NL+ R++ + +A A +E Sbjct: 321 GGFTP------LCLQLIRTGESAGALDQMLENLAHHHREQTHQRADSLAAHLEPIMLVIT 374 Query: 133 IGSLPFCVSTLVYFTS 148 + V + Sbjct: 375 GSLVGILVVAMYLPVF 390 >gi|313905297|ref|ZP_07838664.1| Type II secretion system F domain [Eubacterium cellulosolvens 6] gi|313469908|gb|EFR65243.1| Type II secretion system F domain [Eubacterium cellulosolvens 6] Length = 351 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 7/157 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 + + ++AG+ + +A++ SSD S + + H L +++ + Sbjct: 15 ELSAFAGQMALILKAGISSLEGIAILKDDSSDKKYHSVLMSIQKEMHQSGYLYKALEKSG 74 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + P + ++ + GNL + +LS + ++ + I+ Sbjct: 75 SFPP------YMVQMTRIGEETGNLDTVMESLSFHYNREEQIRRNTINSVVYPALMTAIM 128 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 ++ + V L G LL + A Sbjct: 129 LAVILVLIVRVMPIFEQVFRELGAVITGPALLFINAG 165 >gi|295112043|emb|CBL28793.1| Type II secretory pathway, component PulF [Synergistetes bacterium SGP1] Length = 382 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/163 (11%), Positives = 54/163 (33%), Gaps = 9/163 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + +++GLP++D++ ++ Q+ D + +++ G +++ Sbjct: 64 FCRSLASYLKSGLPLADSLRIMAKQARDRHMGPALEKLLAEVEGGRKFHTALAESGA--- 120 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + G+L LA + + + K++ A + + Sbjct: 121 ---FRESLWRVAESGEQSGSLISVLAEAAEQFKLEDGLVRKIRGAMTYPIVMAVVGVGVV 177 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI--GIMV 178 + T V + + + + +I G+ V Sbjct: 178 TFMLTYVVPKISSLFEDMHQTLPLPTRILIGLSSFIIDWGVWV 220 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 48/142 (33%), Gaps = 11/142 (7%) Query: 9 TAKFLDDFPNAL--DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + AL + +R+G+P+ A+ + + Sbjct: 243 MRGINEQLTLALVTSHLSTLLRSGIPLVQALRMAS-SMDPR--------ARRWLDCAEMV 293 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ R R + + ++GG LS+AL+N+S R+ + + + ME Sbjct: 294 KAGHRFDRALERTGFPEEIVAVVRVGEMGGELSQALSNVSGQCREIAQSRMERLSTLMEP 353 Query: 127 KASAWIIGSLPFCVSTLVYFTS 148 + S+ F V ++ Sbjct: 354 MMVLLLGVSVGFIVLAILTPVF 375 >gi|229825611|ref|ZP_04451680.1| hypothetical protein GCWU000182_00973 [Abiotrophia defectiva ATCC 49176] gi|229790174|gb|EEP26288.1| hypothetical protein GCWU000182_00973 [Abiotrophia defectiva ATCC 49176] Length = 347 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/173 (12%), Positives = 64/173 (36%), Gaps = 13/173 (7%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRM 72 ++ D I + G+P+ + ++ + + ++V + G+S +E++ Sbjct: 10 EEISVFCDQIAMILNGGIPIFEGTHILYEEMDEGRTKDILKKVDDNVKSGMSFNEALKES 69 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + ++ G L + + +LS +K ++++ + Sbjct: 70 GA------FPNYMCEMVKIGEMTGKLEDIMRSLSGFYERENLVKNSIRSVISYPT---VL 120 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +G + + LV P + ++ + G G M I+V ++++ Sbjct: 121 LGMMAVILMVLVGKILPMFEDIFLELDAGT---GTTVGIMNTSILVSKVIVCI 170 >gi|320108203|ref|YP_004183793.1| type II secretion system F domain-containing protein [Terriglobus saanensis SP1PR4] gi|319926724|gb|ADV83799.1| Type II secretion system F domain protein [Terriglobus saanensis SP1PR4] Length = 399 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 58/182 (31%), Gaps = 9/182 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGL 63 KR L+ F V ++AGLP+ ++ ++ + D + E G Sbjct: 50 ASKRKKVKLESFLIFNQQFVTLIKAGLPIPGSLQLLGRRQKDLRLKAQLENIAERVKTGE 109 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 SLS + T + + GNL E L R + K++A Sbjct: 110 SLSAAFDAQG------GFPLVYTTTLLAGERSGNLEEVLQRYLDFQRISLTFRKKLKASM 163 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG--VAAAFMLIGIMVMRL 181 + ++ SL + T V + L + V GI + + Sbjct: 164 VYPVLLVTLVLSLFIFLITFVVPRFATLYDQLNTPLPAITVFLLHVGNIAQNYGIYIAVV 223 Query: 182 MI 183 ++ Sbjct: 224 LV 225 >gi|302530824|ref|ZP_07283166.1| predicted protein [Streptomyces sp. AA4] gi|302439719|gb|EFL11535.1| predicted protein [Streptomyces sp. AA4] Length = 231 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 47/127 (37%), Gaps = 3/127 (2%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 LD++ +RAG+PV A+A + + + LG + + + + Sbjct: 94 LDLLAACLRAGMPVPTALAAVAPGAPPDTENALHATANLLALGSDAAPAWAPLRARPGFA 153 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 E + + ++ G L+ +L+R +RD ++A+ +A + + Sbjct: 154 E---LAVAATRTARSGAALASTADDLARRVRDGLGVEAEERAERAGVALAMPVGLCFLPA 210 Query: 140 VSTLVYF 146 L Sbjct: 211 FFALGVL 217 >gi|46447530|ref|YP_008895.1| putative protein of the general secretion pathway [Candidatus Protochlamydia amoebophila UWE25] gi|46401171|emb|CAF24620.1| putative protein of the general secretion pathway [Candidatus Protochlamydia amoebophila UWE25] Length = 395 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 23/180 (12%), Positives = 55/180 (30%), Gaps = 8/180 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60 K I + + + + V AG+P+ +++ I QS + E Sbjct: 45 KSKINGKQNLKGEALLAFTVQLSQLVNAGIPLYESLIAIEEQSRGESFHRVVLSLCEQIR 104 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+SLS +++ + + G L L L+++L + +K ++ Sbjct: 105 TGMSLSGAMATYSES-----FDQLYCGMVAAGEAVGMLGPILEKLTQLLAKQMKLKKQIT 159 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + + V + G + + +L + + Sbjct: 160 TAMIYPCILGGFSLLIITLLLGFVVPSLEGIFAERKLNAFTNAIL--GLSHFFRNYWWLY 217 Score = 35.1 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 10/137 (7%), Positives = 38/137 (27%), Gaps = 7/137 (5%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESIS 70 + ++ GL + +++ + G + + E ++ G SLS+ Sbjct: 256 IQTAVARFCRTMGTLLQGGLNMIESLRISRGVMHNVVLEKEIQQAEAKIIEGHSLSQ--- 312 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + + + + G L+ ++ + + Sbjct: 313 ---ELGKSKYIPPLVSKMLAVGEESGTSIVMLSRIADMYEQEIEKTLDRVMALAQPVILI 369 Query: 131 WIIGSLPFCVSTLVYFT 147 + + + ++ Sbjct: 370 VMGLVIGTVLLAIMLPL 386 >gi|314922439|gb|EFS86270.1| conserved hypothetical protein [Propionibacterium acnes HL001PA1] Length = 236 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 52/158 (32%), Gaps = 5/158 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D A + V G S A+ + + +G S+S+++ Sbjct: 83 RDVARATRALAGRVSVGEIPSVALEHVADDVE-----VLAQARRAHAVGGSVSDALIATS 137 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + + + + G L+ A +++ R ++A + + A+AS I+ Sbjct: 138 RQPGMAGLVPLAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIM 197 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 G LP + + L G L + Sbjct: 198 GLLPLVGLLMGHVVGAHPTVFLTTTRLGRACLLGSTLL 235 >gi|6176560|gb|AAF05620.1|AF190908_1 XpsF [Xanthomonas oryzae pv. oryzae] Length = 156 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 40/120 (33%), Gaps = 7/120 (5%) Query: 1 MKHLIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 ++ L+ R F + + + AG P+ A+++++ E R + Sbjct: 40 LRMLL--RKKPFDNAALVQFTQQLATLIGAGQPLDRALSILMD----LPEDEKSRRVIGD 93 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + S + + GG++ + L L+ L + ++ KV Sbjct: 94 VRDTVRGGAPLSSALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKV 153 >gi|257092074|ref|YP_003165715.1| type II secretion system protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044598|gb|ACV33786.1| type II secretion system protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 410 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 23/186 (12%), Positives = 59/186 (31%), Gaps = 21/186 (11%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71 D + +RAG + +A+ + + S R + G S S +++R Sbjct: 71 NSDLMLFYRQMQLMLRAGHTILEALEAAGRLSARPRLSSLLDRCAQRISAGSSFSAALAR 130 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P + ++ + G L L+ + R +++ ++ Sbjct: 131 ESSTFP-----RLAVKLAEAGEASGELDAVFERLAVLTEKRADVRRQMMTALTYPAIVTL 185 Query: 132 IIGSLPFCVSTLVYFTSPGYMN-------------VLINDPRGHM--LLGVAAAFMLIGI 176 + + + V ++ + + D G L +A +++G Sbjct: 186 VSIGVISFLVGSVVPRFAVFLQARGKAVPWAARTMMEMADWLGRWGFTLVMALLGLVVGF 245 Query: 177 MVMRLM 182 + +R + Sbjct: 246 IALRRL 251 >gi|160931592|ref|ZP_02078987.1| hypothetical protein CLOLEP_00424 [Clostridium leptum DSM 753] gi|156869463|gb|EDO62835.1| hypothetical protein CLOLEP_00424 [Clostridium leptum DSM 753] Length = 346 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/175 (8%), Positives = 49/175 (28%), Gaps = 9/175 (5%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSL 65 +R + + V+AG+ + + + ++ + ++ + G S Sbjct: 3 RRKILSNSEISAFCGQLSLIVKAGISLQEGLLIMAEDDKNGRGGEIIEKLTDVMEAGGSF 62 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + ++ + + + + G L E L +L + +++ + Sbjct: 63 AAALKESGEFPG------YMVTMVEIGEASGKLEEVLESLRAYYERNDAVSRSIRSSVIY 116 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN--DPRGHMLLGVAAAFMLIGIMV 178 ++ ++ + V L L+ + + Sbjct: 117 PLVMIVMMVAVILVIIIQVLPVFQQVFEQLGGEMSQFAQGLMSFGRGVSQYAVWI 171 >gi|73539235|ref|YP_299602.1| type II secretion system protein [Ralstonia eutropha JMP134] gi|72122572|gb|AAZ64758.1| type II secretion system protein [Ralstonia eutropha JMP134] Length = 344 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 65/147 (44%), Gaps = 5/147 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR---SEFRRVIETQHLGLSLSES 68 D+ P +D++ GL + ++ +IV + +R E + G S ++ Sbjct: 190 VEDELPIVIDMLRLLQGVGLSIDQSLQIIVSEFGGMLRVLGPELALSNQQFASGRSREQT 249 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + R+ R + + T+++ + GG + E L + +++ + + K + + K Sbjct: 250 LLRIGRLFDSENLKSLITLLTQVDRHGGAVQEPLRLFGQRMQEARKSRMKDEIGRLTVKM 309 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVL 155 +A ++ S+ + L+ PG++ V+ Sbjct: 310 TAVMVVSMLPVL--LIITAGPGFLGVI 334 >gi|15895374|ref|NP_348723.1| general secretion pathway protein F [Clostridium acetobutylicum ATCC 824] gi|15025093|gb|AAK80063.1|AE007711_20 General secretion pathway protein F [Clostridium acetobutylicum ATCC 824] gi|325509519|gb|ADZ21155.1| General secretion pathway protein F [Clostridium acetobutylicum EA 2018] Length = 396 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 27/196 (13%), Positives = 65/196 (33%), Gaps = 25/196 (12%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + + + + AG + ++++++ + +R + + + G S+ Sbjct: 52 RNKKVSSKELYIFSKQMSYMMNAGFNICESLSIMYDKFQGNMRRIIKCIEKGIENGNSIY 111 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ +P F + + GNLSE NL +D+ + K++ + Sbjct: 112 KSVQYCGDSIPY-----FFKSMLFIGEESGNLSEVFRNLGEYYKDQWKTEEKIKNATTYP 166 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML----------------LGVAAA 170 + + LV P ++ L N G + A Sbjct: 167 A---IVFAFTIIILVFLVSKVIPRFVETL-NSLGGKLPKITEFILSVSFFIKDDFLGIIA 222 Query: 171 FMLIGIMVMRLMINFD 186 F+LI + + ++ Sbjct: 223 FILIIYGISKKLLRVK 238 >gi|163857178|ref|YP_001631476.1| general secretion pathway protein F [Bordetella petrii DSM 12804] gi|163260906|emb|CAP43208.1| general secretion pathway protein F [Bordetella petrii] Length = 400 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/177 (11%), Positives = 59/177 (33%), Gaps = 8/177 (4%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62 +++R + + + + A LP+ A+ + Q+ V V + G Sbjct: 53 RLQRRLS--DGELAWLTRQLASLLAARLPLDAALNATLEQAESRHVAGALAGVRDEVRAG 110 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L+++++ R + + + G+L++ + L+ + +R ++ KV Sbjct: 111 YRLADALATRPR-----DFPEIYRALVAAGEESGDLAQVMEKLAGYIEERNALRGKVMTA 165 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + A + + + V + + +A + + + Sbjct: 166 FIYPAVVACVSVVIVAFLLGYVVPQVITAFDHAHQQLPLLTRIMLALSDFVRQWGWV 222 Score = 35.1 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 38/130 (29%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + +G+ + A+ +D +R E G L+ +++ Sbjct: 269 FASTLAILSGSGVSLLGALNAARRTLGNDRLRRAVDEAAERVREGAPLASALAA------ 322 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L E L ++ L +A +E + G + Sbjct: 323 QKVFPSLLIHLIASGEKTGRLPELLERGAQNLSRDLERRAMAMTALLEPLLILLMGGFVL 382 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 383 LIVLAVMMPI 392 >gi|134046668|ref|YP_001098153.1| type II secretion system protein [Methanococcus maripaludis C5] gi|132664293|gb|ABO35939.1| type II secretion system protein [Methanococcus maripaludis C5] Length = 298 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 80/197 (40%), Gaps = 17/197 (8%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLG 62 + + + KF + P AL ++V S+ +G V +A+ ++ V F +V+ Sbjct: 77 MYESKMDKFDKNIPKALYVMVLSLDSGRSVVEAINEVIRSGIPEVDVVFSKVVTLMTERK 136 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS +++ + + + +I + GG L++ L L++ L D +N+K+++ ++ Sbjct: 137 LSFEDAMILVSNSLDSKIFRQVGRLIIENRKYGGELADTLKKLAKTLEDLQNLKSQLMSV 196 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR----------------GHMLLG 166 + A II + + ++ L G L G Sbjct: 197 TANGLAVGLIILCGVIPATAGLIGGYLTVISQLAPTMPSVEASQISKAIETIQIGSGLFG 256 Query: 167 VAAAFMLIGIMVMRLMI 183 + A L G+ + R++I Sbjct: 257 LFFAVPLFGLKINRMII 273 >gi|317493265|ref|ZP_07951687.1| type II secretion system protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918658|gb|EFV39995.1| type II secretion system protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 397 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 47/137 (34%), Gaps = 6/137 (4%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 ++ + + AGLP++ + ++ + +R+ + G+ LSE++ P Sbjct: 64 IEQLATLLHAGLPLAKCLTLLAEGHPLRHWQCLLQRLASQINNGIPLSEAMMDYSSIFPP 123 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 +T +L G L E+ LS + + +KAK+ + + Sbjct: 124 VYGKTIATA-----ELTGRLDESCLALSEQQKRQVELKAKIVKALRYPALLLSVTVIVIT 178 Query: 139 CVSTLVYFTSPGYMNVL 155 + V Sbjct: 179 IMLVWVLPQFAELYKNF 195 >gi|297617363|ref|YP_003702522.1| type II secretion system F domain protein [Syntrophothermus lipocalidus DSM 12680] gi|297145200|gb|ADI01957.1| Type II secretion system F domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 402 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/159 (13%), Positives = 48/159 (30%), Gaps = 8/159 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + +R+G+ VSD + ++ Q SD + + LS Sbjct: 61 SQSLAVLCRQMAMVLRSGMGVSDGLELVSRQVSDRLLRREAL----RLYREVLSGRSLSE 116 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + GNL + L N+S+ + R + +V+ + + Sbjct: 117 AMMAEDSLIPGLLARMVATGEASGNLEQILHNMSQYYQQRYETEKRVKGALIYPALLMVV 176 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 L V + + L++ + L Sbjct: 177 GIGLLAYVFAFLIPQ----VESLLHSAGARLPLVTRIIL 211 >gi|171059294|ref|YP_001791643.1| type II secretion system protein [Leptothrix cholodnii SP-6] gi|170776739|gb|ACB34878.1| type II secretion system protein [Leptothrix cholodnii SP-6] Length = 382 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 63/166 (37%), Gaps = 10/166 (6%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R A+ ++ + +R+GL + +A+ + + + +R++E G +LS Sbjct: 38 RDARLDEE--QFSHDLALMLRSGLSLIEALRTVAERQHGSAATAMQRLLEALSQGETLST 95 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + S S+L G+L+++L ++ + +++++ + + Sbjct: 96 ALQSSGQ------FSTAMLACVKASELTGDLADSLGRFAQNATRMRQLRSRLVSACVYPG 149 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAF 171 + + + V + D P +L+ V A Sbjct: 150 LLITVASLVVLFLLIYVVPRFAMVLEGAARDMSPMSRLLIDVGMAL 195 >gi|288931900|ref|YP_003435960.1| type II secretion system F domain protein [Ferroglobus placidus DSM 10642] gi|288894148|gb|ADC65685.1| Type II secretion system F domain protein [Ferroglobus placidus DSM 10642] Length = 634 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 55/156 (35%), Gaps = 3/156 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 + K P+ L + +GL + A+ V+ + E R++ + G ++E Sbjct: 416 KLRKLEKHLPDFLRGLGSLNESGLNIVTAIKVLSATQLGVLTEEVRKIRKDIEWGRLVTE 475 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ R + VS ++I+ N+ A+ + + + + +++ Sbjct: 476 ALERFEDRVGSSLVSKVVSIINKALMATSNVKAAILAAAADVELLLDFRERLKNAM---F 532 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 II V +++V N G + Sbjct: 533 TYMVIIYVTFAVFLFTVVVVLQNFISVFSNISVGQI 568 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 67/182 (36%), Gaps = 6/182 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQ 59 + + R AK + +++ + G P+ + + + + V EF ++ Sbjct: 125 SFIARSRKAKIDATLYHVASLMLGMAKGGTPLLELFRTVAEERHVTGEVGKEFSIIVRNV 184 Query: 60 HLGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + SI + P Q++ F ++ + G +LSE L L + + + Sbjct: 185 TVFGKDIITSIKEVAATTPSQKLRDFLEDLAGVLEGGSSLSEFLEFKIAHLAEERERAYQ 244 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + S E A ++ + + +L+ F MN++ M V + G+ Sbjct: 245 LYISSYEILAEIYVAMLIVAPLFSLIVFVV---MNMIGESTINLMKAMVYLYIPIGGLFF 301 Query: 179 MR 180 + Sbjct: 302 VY 303 >gi|149927029|ref|ZP_01915287.1| putative tight adherence tadc related transmembrane protein [Limnobacter sp. MED105] gi|149824250|gb|EDM83470.1| putative tight adherence tadc related transmembrane protein [Limnobacter sp. MED105] Length = 317 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 53/146 (36%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 +K + + R A F + +D++ GL V ++ V+ Q RR Sbjct: 154 LKTVGEGREAAFERELVAVVDVMRLLQGVGLSVDQSIEVMTSQLYDLVPITGRMLRRSRA 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ + RM E F V+ + GG + E L S L +++ A Sbjct: 214 QVKSGVPWIVMLKRMSSMYSSDEFKSFVQVLEQIEKFGGAVQEPLKQFSDRLVEKERANA 273 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 K + K + ++ ++ + + Sbjct: 274 KETMGKLTVKLTGVMVITMLPALLIM 299 >gi|288937124|ref|YP_003441183.1| type II secretion system F domain protein [Klebsiella variicola At-22] gi|288891833|gb|ADC60151.1| Type II secretion system F domain protein [Klebsiella variicola At-22] Length = 401 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/158 (13%), Positives = 54/158 (34%), Gaps = 6/158 (3%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + + ++AGLP++D ++++ Q ++ + G++ + ++++ + Sbjct: 61 SETIRQLATLLQAGLPLADGLSLLAQQQPHPQWQALLESLGRELAQGVAFTTALAQWPQA 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L L+ ++++ + KV+ + Sbjct: 121 FPP-----LYLAMISTGELTGKLDICCQQLANQQQEQQRLAGKVKQALRYPLIVLALALL 175 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 L + V + VAA ML Sbjct: 176 LVLGMLYFVLPEFTAIYQTFSTPLPLLTRMVVAAGDML 213 Score = 37.8 bits (86), Expect = 0.63, Method: Composition-based stats. Identities = 18/136 (13%), Positives = 41/136 (30%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 I+ + AG+ + + S R + G + +++SR Sbjct: 261 QQLSLIFTILALTQSAGISFLQGLQSVEATLSCPLWRQRLAQARTLIAQGEPIWQALSRC 320 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P + + G L + L NL+ R++ + +A A +E Sbjct: 321 GGFTP------LCLQLIRTGESAGALDQMLENLAHHHREQTHQRADSLAAHLEPIMLVIT 374 Query: 133 IGSLPFCVSTLVYFTS 148 + + + Sbjct: 375 GSLVGILLVAMYLPVF 390 >gi|254456692|ref|ZP_05070121.1| type II Secretion System PilC [Candidatus Pelagibacter sp. HTCC7211] gi|207083694|gb|EDZ61120.1| type II Secretion System PilC [Candidatus Pelagibacter sp. HTCC7211] Length = 413 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 49/158 (31%), Gaps = 11/158 (6%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 V+AGLP+ + + ++ Q ++ V + G++LS+ R + Sbjct: 79 QFATMVKAGLPILNVLTMLRDQIEHPTMKEIIEDVRKNLEGGITLSKCFERYPKI----- 133 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + G L L L L R+ +K K++ + ++ + Sbjct: 134 FDSVYINLIKAGEASGKLDTFLLKLVESLEKREKVKKKIKGALTYPVVMFSVAITVMVFM 193 Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 V + G L A M + Sbjct: 194 LIKVVPVFAKMYEGM-----GVALPTPTAVIMTASNFM 226 >gi|206580419|ref|YP_002240423.1| protein transport protein HofC [Klebsiella pneumoniae 342] gi|206569477|gb|ACI11253.1| protein transport protein HofC [Klebsiella pneumoniae 342] Length = 401 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 20/158 (12%), Positives = 54/158 (34%), Gaps = 6/158 (3%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + + ++AGLP++D ++++ Q ++ + G++ + ++++ + Sbjct: 61 SETIRQLATLLQAGLPLADGLSLLAQQQPHPQWQALLESLGRELAQGVAFTTALAQWPQA 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + +L G L L+ ++++ + KV+ + Sbjct: 121 FPP-----LYLAMISTGELTGKLDICCQQLANQQQEQQRLAGKVKKALRYPLIVLALALL 175 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + + V + VAA ML Sbjct: 176 VVLGMLYFVLPEFTAIYQTFSTPLPLLTRMVVAAGDML 213 Score = 37.8 bits (86), Expect = 0.63, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 41/136 (30%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 I+ + AG+ + + S R + G + +++SR Sbjct: 261 QQLSLIFTILALTQSAGISFLQGLQSVEATLSCPLWRQRLAQARTLIAQGEPIWQALSRC 320 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P + + G L + L NL+ R++ + +A A +E Sbjct: 321 GGFTP------LCLQLIRTGESAGALDQMLENLAHHHREQTHQRADSLAAHLEPIMLVIT 374 Query: 133 IGSLPFCVSTLVYFTS 148 + V + Sbjct: 375 GSLVGILVVAMYLPVF 390 >gi|293604905|ref|ZP_06687302.1| general secretion pathway protein F [Achromobacter piechaudii ATCC 43553] gi|292816733|gb|EFF75817.1| general secretion pathway protein F [Achromobacter piechaudii ATCC 43553] Length = 401 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 18/166 (10%), Positives = 50/166 (30%), Gaps = 4/166 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 RT D + + A LP+ A++ + Q+ + + + Sbjct: 56 RTRLSDADLAWLTRQLASLLAARLPLDAALSATLEQAEKKHIAATLGAVRDDV----RAG 111 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + + G+L++ + L+ + +R +++KV + Sbjct: 112 HRLSTALAARPRDFPEIYRALIGAGEESGDLAQVMEKLADYIEERNTLRSKVMTAFIYPA 171 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 A + + + V N + +A + + Sbjct: 172 VVASVSVIIVIFLLGYVVPQVVSAFNHAKQQLPMLTRMMLALSDYV 217 >gi|291295428|ref|YP_003506826.1| type II secretion system protein [Meiothermus ruber DSM 1279] gi|290470387|gb|ADD27806.1| type II secretion system protein [Meiothermus ruber DSM 1279] Length = 399 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 6/160 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + + VRAG+P+ A+ + S +R R + E G L+ ++ Sbjct: 59 ELVILTEQLATMVRAGVPLVQALHTLSLQAGSPSLREALRGLRERIEAGQGLARAMEDYP 118 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + P + +LGG+L L L+ L ++ K + ++ Sbjct: 119 QVFPP-----LMRHLVAAGELGGSLEVVLQRLAEYLDKSYELQEKTRTALFYPCFVLGVL 173 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 G + + V G ++++ Sbjct: 174 GVVVAVLLVFVIPVFAQLYRETGVALPGPTQFLLSSSAFF 213 >gi|119476013|ref|ZP_01616365.1| general secretion pathway protein F [marine gamma proteobacterium HTCC2143] gi|119450640|gb|EAW31874.1| general secretion pathway protein F [marine gamma proteobacterium HTCC2143] Length = 410 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 53/161 (32%), Gaps = 9/161 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 + + +++ +P+ +A+ I Q+ + +R V G SL+ S++ Sbjct: 72 AELAVITRQLATLIQSAMPLEEALTAISQQTDSNKLRGIVLNVRSKVMEGHSLAHSMADY 131 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P + G+L L L+ + + K + + + Sbjct: 132 PNAFPG-----LFRATVAAGEHSGHLELVLNRLADYTENAYQSRQKTKLALLYPA---IL 183 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 VS L+ F P ++V I + LL + Sbjct: 184 FFLAIAIVSGLMAFVVPDVVDVFIGQGQELPLLTRGLISLS 224 Score = 38.6 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 13/127 (10%), Positives = 41/127 (32%), Gaps = 7/127 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +G+P+ +A+ + + ++ + G S+ +++ + + P Sbjct: 284 LSILTSSGVPLVEAMKIAAKVVENCFLQQAVHLATQQVREGGSMHQALEQSGYFPP---- 339 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L L +S + + E ++ G++ V Sbjct: 340 --IMIHMIASGEASGELDTMLERISDSQQKELDNLVATLIGIAEPVMLVFMGGAVLIIVV 397 Query: 142 TLVYFTS 148 ++ Sbjct: 398 AILQPIF 404 >gi|317123680|ref|YP_004097792.1| type II secretion system F domain [Intrasporangium calvum DSM 43043] gi|315587768|gb|ADU47065.1| Type II secretion system F domain [Intrasporangium calvum DSM 43043] Length = 266 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 21/169 (12%), Positives = 52/169 (30%), Gaps = 4/169 (2%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET----QHLGLSLSESISRMVR 74 L+ + ++ AGL S AV + + R++ G ++ Sbjct: 80 LLEGVAPALEAGLTPSVAVRLSGATLRSSIDPLTARLVAELTETSERGAHVAPVWRSWAG 139 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 +E+ F + + G L++A+ + + +V +A+ ++ Sbjct: 140 AEGSEELRFVAAAWQLSEVTGAPLADAVRRAVASVHQARERARRVHVAVAGPRATVVVLT 199 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 LP + + P + + +G R ++ Sbjct: 200 VLPLTGPLFGLACGVPPTELYLASPLSSAAAALGLVLIWVGRRWCRRLV 248 >gi|293392844|ref|ZP_06637162.1| protein transporter [Serratia odorifera DSM 4582] gi|291424703|gb|EFE97914.1| protein transporter [Serratia odorifera DSM 4582] Length = 399 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 51/162 (31%), Gaps = 6/162 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 + + ++AGLP+ + + ++ + R + G SE+I+ Sbjct: 59 EALIQFTRQLATLLQAGLPLVNTLQLLAQEHPCAAWRCLLADLGALVAQGQPFSEAIADY 118 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P + +L GNL L++ ++ ++ KV A + Sbjct: 119 PQIFPQ-----VYRQLIAIGELTGNLDRCCWQLAQQQDQQQKLQKKVVAALRYPLFVCTV 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + + +V +A + +LI Sbjct: 174 ALLVSIVMLVMVLPEFAKVYQSFDAPLPWFTQGLLALSSLLI 215 >gi|288921590|ref|ZP_06415862.1| hypothetical protein FrEUN1fDRAFT_5560 [Frankia sp. EUN1f] gi|288347008|gb|EFC81313.1| hypothetical protein FrEUN1fDRAFT_5560 [Frankia sp. EUN1f] Length = 294 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 62/175 (35%), Gaps = 2/175 (1%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 + D + I + AG + A+A + +R+ + L +++ Sbjct: 99 RLGDAVATWAEQIREGLDAGQHLRAAIAASTDHPPAELADPLQRLAARLRSAMPLPDALW 158 Query: 71 RMVRYMPLQEVSFFSTVI-SVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + +P + + + G+L +A+ + R+ + AL + + Sbjct: 159 ALRAEVPHPTLGPVIIALDVAYRRGAGDLPRLMASQTAATREATALLRDQHALRARHRRA 218 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 ++ +L T++ P ++ + +G + L V +++ + + M Sbjct: 219 MTLLLALFTGAITVLLVAWPNFLAP-YRNLQGQLALTVIGGGVVLAVRALAAMSR 272 >gi|254293818|ref|YP_003059841.1| general secretion pathway protein F [Hirschia baltica ATCC 49814] gi|254042349|gb|ACT59144.1| general secretion pathway protein F [Hirschia baltica ATCC 49814] Length = 401 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 57/181 (31%), Gaps = 18/181 (9%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + +G PV +A+A + S + VRS V G LS+++S P Sbjct: 66 LTRQLAMLISSGTPVEEALAAVGDTSRKNAVRSVLADVRSNVVEGQPLSDAMSSQSSAFP 125 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 T I + G L +A L+ + M+ KV + + A + + Sbjct: 126 P-----LYTSIVAAGESAGALDAVMARLADYQEKSEEMRGKVVSALIYPMVVAVVALMVV 180 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGV---------AAAFM---LIGIMVMRLMINF 185 + V + + + V +G+ V+ M Sbjct: 181 VALLVFVVPRVVEQFDTMGQKLPLLTQIMVNISEFLQAYGLVLFGACAVGVFVLGHMSKV 240 Query: 186 D 186 D Sbjct: 241 D 241 >gi|153938465|ref|YP_001391230.1| type II secretion system protein F [Clostridium botulinum F str. Langeland] gi|152934361|gb|ABS39859.1| bacterial type II secretion system protein F [Clostridium botulinum F str. Langeland] gi|295319266|gb|ADF99643.1| bacterial type II secretion system protein F [Clostridium botulinum F str. 230613] Length = 396 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 21/186 (11%), Positives = 66/186 (35%), Gaps = 16/186 (8%) Query: 2 KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 K+L K R+ K + + + + +G+ ++DA+ ++ ++ I Sbjct: 45 KNLFKIRSEKITLKECSILCNKLYMLMASGINITDAINIVYEDFNNVHVKNSLYTIRNNI 104 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L + + F + + G + L++L ++ +++ Sbjct: 105 LRGDSIYNSFK----GFSNIYPKFLLSMIYIGEESGRIQYVLSDLKNFYENKYKFNKEIK 160 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM-------LLGVAAAFML 173 + ++ + + L++ P ++ L N+ G + + + ++ Sbjct: 161 NALIYPI---IVLIAFIIMLYILIHMVVPSFIG-LFNELGGSIPKKTLGMITAIKVFNVI 216 Query: 174 IGIMVM 179 +GI+ + Sbjct: 217 LGILFI 222 Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 49/130 (37%), Gaps = 5/130 (3%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 N + + +++G+P++ ++ ++ + + + E + +L ++ + S + Sbjct: 265 NFSNSMNLMIKSGIPINKSLKLLEEVTDNYIFKENIK-----NLNKNIKDGKSISISLNK 319 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L E+ ++ +IL+ K KV +E ++ + Sbjct: 320 CGFSNKILLSMVHIGEESGRLEESFYSVYKILKKDLEEKLKVSVKLIEPTIIIFMSLIIC 379 Query: 138 FCVSTLVYFT 147 + Sbjct: 380 IIFIYVFIPM 389 >gi|83718806|ref|YP_443055.1| hypothetical protein BTH_I2538 [Burkholderia thailandensis E264] gi|83652631|gb|ABC36694.1| membrane protein, putative [Burkholderia thailandensis E264] Length = 373 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66 +D+ P +D++ GL + ++ V+ + SE G + Sbjct: 219 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTRE 278 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ R+ +++ ++ + GG + E L LR+ + + + + Sbjct: 279 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 338 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154 K + +I +L + + PG + V Sbjct: 339 KMTGVMILTLLPALF--IVTAGPGMLAV 364 >gi|119872897|ref|YP_930904.1| type II secretion system protein [Pyrobaculum islandicum DSM 4184] gi|119674305|gb|ABL88561.1| type II secretion system protein [Pyrobaculum islandicum DSM 4184] Length = 262 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 66/177 (37%), Gaps = 5/177 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHL 61 HL+ R + F ++F L +++ + AG+P+ AV + + + E + Sbjct: 70 HLVSARRSHFENNFVYTLSVLLPLLAAGVPLGRAVTRLAEVEDDRYIARELALAAREMVV 129 Query: 62 GL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 S E++ +P V++ +++ + L + K ++A+ Sbjct: 130 MGSSPEEALRNSAARVPSPTYRETVEVLTKAARITQRVDLVLLARLDWMLRAKQVRAQSL 189 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 S+ +++ + + + S + L G + L +LIG++ Sbjct: 190 VRSLSLMFEVFVVAVMLLPIMVYIVALS---FSPLGALQVGGLALDPLTLMVLIGLV 243 >gi|56459562|ref|YP_154843.1| Type II secretory pathway, PulF-like [Idiomarina loihiensis L2TR] gi|56178572|gb|AAV81294.1| Type II secretory pathway, PulF-like [Idiomarina loihiensis L2TR] Length = 392 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 56/157 (35%), Gaps = 9/157 (5%) Query: 1 MKHLIKKRTAKFLDDFPNA---LDIIVRSVRAGLPVSDAVAV-IVGQSSDPVRSEFRRVI 56 +K L K++ L + +GLP+S+A+ I S +R I Sbjct: 41 IKRLSKRQRKLIRPKLSLWYILLQQTASLLESGLPLSEALRHSICETKSRSLRWLIEDCI 100 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 + G S S +++ ++P +++ + + G L++AL L + + + +K Sbjct: 101 RSIEHGFSFSRALTYYEHWLPKADINAIAWA-----EQNGQLADALQQLQELEKRQHQLK 155 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153 ++ + + F + V Sbjct: 156 KQLTKALRYPVIVLLVAAGVCFMMMGWVLPAFAQLFG 192 >gi|148508014|gb|ABQ75813.1| transmembrane protein [uncultured haloarchaeon] Length = 674 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 65/184 (35%), Gaps = 7/184 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQH 60 ++ +R K + P A + R + + D + + + V EF+ + + H Sbjct: 148 YIANERKRKININLPFATTFMYAMSRGSVTIIDVIEAVAEAEDTYGQVSVEFQSIANSIH 207 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 L +I + P ++S + G ++ + S + + K Sbjct: 208 YSTNDLRSAIKNEIEITPSAKLSELLEDLLNIIDTGSDMDTFFLHRSETYIEESKEEQKQ 267 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +E + +I+ + + LV + + + G++L +A + +G V Sbjct: 268 ILDQLEVLSEVYIVLFVASPIFVLVINV----VMLFLGASNGNILYALAYLAIPLGGGVF 323 Query: 180 RLMI 183 ++ Sbjct: 324 TAIV 327 Score = 47.8 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 60/162 (37%), Gaps = 1/162 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++ L P A S GL +SD+ V+ S+D + S+ + I Sbjct: 449 LYELQQRNKKVVLRRIPEAFSTAAESNSQGLMLSDSFDVVAKNSTDYLSSKLQVAINESR 508 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 S ++ R + + +S +I+ ++L G++ + ++ ++ + A+ Sbjct: 509 WTNSFERALIRFANELEVSRLSRTIKLITKANKLTGDIQGVVKIAAKDVKLMAELDAERV 568 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM-NVLINDPRG 161 S ++ + C+ + T + + G Sbjct: 569 EQSYMQIIVIFVSYLISVCIIVSLNITFIQMLGDSAFQTGSG 610 >gi|327467690|gb|EGF13187.1| bacterial type II secretion system protein F [Streptococcus sanguinis SK330] Length = 408 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/171 (10%), Positives = 50/171 (29%), Gaps = 4/171 (2%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 L D + + +G+P+++AV ++ Q++ +++ S Sbjct: 57 KKIKLKDISLFCKQMSVMLESGIPLNNAVDILEQQATSKNLKSSLKIVSKSLKEGS---- 112 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + G L E L +S +++ + Sbjct: 113 QLSKAMLDQEGMFPDLLIRMVQAGEKTGKLDEVLEKMSEHYNKELKTSRQIRGAMIYPAV 172 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A++ + + +V + G + +AA+ + + Sbjct: 173 LAFLAVAAVLALLYIVIPSFSGIFEQSGMAMPLPTRIVLAASNFVRSYWYI 223 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ +A+ +++ V E ++ L + Sbjct: 270 FASTLAILTSAGIPLVEAIESAAATTNNAVVIEKMKIANE-----GLQKGERLTGMITAT 324 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G+L L S + K +E + + Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLVKTSDYYEEELETAIKQLLSLLEPAMIIVMGVIIGG 384 Query: 139 CVSTLVYFTS 148 V++++ Sbjct: 385 IVASVMLPMF 394 >gi|152991618|ref|YP_001357339.1| type II secretion system protein F [Sulfurovum sp. NBC37-1] gi|151423479|dbj|BAF70982.1| type II secretion system protein F [Sulfurovum sp. NBC37-1] Length = 404 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 21/183 (11%), Positives = 60/183 (32%), Gaps = 16/183 (8%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + + +G+ + A+ ++ Q + + + + + +S+ + Sbjct: 60 EMLATFSRELSSYLNSGMTILTAIRLLENQHENEKKYVS--FLNSIRTMIDEGKSLYHAL 117 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + F + G + E L N+ + +K +V+ + I Sbjct: 118 NTQKVYALPEFFVQSLNIAGQSGKMVEVLTNMGNFFSAQNKVKKQVKGAMVYPT---VIF 174 Query: 134 GSLPFCVSTLVYFTSPGYMNVLIND-----PRGHMLLGVAAAF------MLIGIMVMRLM 182 S L+ F P + + P +L ++ ++IGI+++ + Sbjct: 175 TVAIAMTSFLIAFVVPKITGIFEDTDQKLPPITQFVLNISDFLTHYYIHLVIGIVLVIAL 234 Query: 183 INF 185 Sbjct: 235 FKL 237 >gi|30249579|ref|NP_841649.1| type II secretion system protein [Nitrosomonas europaea ATCC 19718] gi|30138942|emb|CAD85521.1| Bacterial type II secretion system protein [Nitrosomonas europaea ATCC 19718] Length = 394 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 22/153 (14%), Positives = 53/153 (34%), Gaps = 6/153 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVR 74 + ++ + AGL + + + +V + D V E ++++ G++ S ++ + Sbjct: 58 LSDFSQELLALLTAGLSLVEGIETLVEKEEDSVTRELLQQILARLREGVTFSRALEFYPQ 117 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 P S+ G+L EAL+ ++ K+ S+ + G Sbjct: 118 VFP-----SLYVATIRASEQTGDLGEALSRYLVYQSQMDLVRKKLVGASIYPVLLLVLGG 172 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 + + V + D +L + Sbjct: 173 LVAIFLLVFVVPKFSAIYEDMGTDLPWMSMLLI 205 >gi|206895309|ref|YP_002247371.1| PilG, putative [Coprothermobacter proteolyticus DSM 5265] gi|206737926|gb|ACI17004.1| PilG, putative [Coprothermobacter proteolyticus DSM 5265] Length = 421 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 22/174 (12%), Positives = 57/174 (32%), Gaps = 8/174 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 D + + +G + +A+ V+ ++ V +I + G+S+S ++ Sbjct: 80 ERDMYFFAFNLANFIESGFNMVEALTVVKERSANKKVSKVIDHLIFYINRGVSVSGAMQL 139 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + + G L AL +LS + +++K+ + + Sbjct: 140 TGAFSP------LFVNLVRSGETSGTLPLALKDLSDFYKTMLGLRSKITNAVLYPIIISV 193 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 V T G +++ + + A + + L++ Sbjct: 194 AAVGAIIVYMLFVLPTLGGLYDMMGAQLPAPTRIVMGIADFIKNY-WIWLIVGI 246 >gi|315606116|ref|ZP_07881147.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315312398|gb|EFU60484.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 298 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 54/147 (36%), Gaps = 1/147 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R P+ +++ +V AG + A+ + G + P+ SE Sbjct: 143 LSIKARRRQRAIDAAVPDCAELLALAVAAGESIPAAIERVAGCAGGPLGSELALTSAHIR 202 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +++ +V ++ S ++ + G L+ L + +R R+R + Sbjct: 203 NGTPSVRALAELVERTDSPSLTRLSRTLTTAIERGSPLASVLHDQARDQRERSLASLMEE 262 Query: 121 ALSME-AKASAWIIGSLPFCVSTLVYF 146 E A + LP V +Y Sbjct: 263 GGRREIAMLLPVVFLILPVTVMFALYP 289 >gi|91783015|ref|YP_558221.1| putative tight adherence TadC related transmembrane protein [Burkholderia xenovorans LB400] gi|91686969|gb|ABE30169.1| Putative tight adherence TadC related transmembrane protein [Burkholderia xenovorans LB400] Length = 337 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 61/157 (38%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 ++ KR +D+ P +D++ GL + ++ V+V + E Sbjct: 174 LRRRAGKRRNGVVDELPLLVDLLRLLQGVGLSLDQSLQVVVNDFRGMLPVLAGELEIAQR 233 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S++R+ +++ ++ + GG + E L LR+ + Sbjct: 234 QFTAGRTREQSLNRLATSYDNEDLRAVMRLLVQVDRHGGAVQEPLKQFGDRLRETRRAML 293 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + + K + +I +L + ++ PG + V Sbjct: 294 RERIGRLAVKMTGVMIVTLLPAL--MIVTAGPGVLAV 328 >gi|326794279|ref|YP_004312099.1| general secretion pathway protein F [Marinomonas mediterranea MMB-1] gi|326545043|gb|ADZ90263.1| general secretion pathway protein F [Marinomonas mediterranea MMB-1] Length = 400 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/137 (12%), Positives = 40/137 (29%), Gaps = 7/137 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + AG+P+ +A++ + Q++ I L Sbjct: 66 VTRQLATLIDAGMPIEEALSGVAQQTTKQRIRSMLLAIR----SKVLEGHPLASALAEYP 121 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L + L L+ + + K+Q + + S+ Sbjct: 122 KAFPILFRASIKAGEESGGLPQVLMQLADYSERVRGNQQKLQMAMLYPAILTIVAISIVV 181 Query: 139 CVSTLVYFTSPGYMNVL 155 + V P ++V Sbjct: 182 FLLGSVM---PDIVSVF 195 >gi|16124430|ref|NP_418994.1| general secretion pathway protein F [Caulobacter crescentus CB15] gi|221233113|ref|YP_002515549.1| type II secretion pathway protein F [Caulobacter crescentus NA1000] gi|13421294|gb|AAK22162.1| general secretion pathway protein F [Caulobacter crescentus CB15] gi|220962285|gb|ACL93641.1| type II secretion pathway protein F [Caulobacter crescentus NA1000] Length = 403 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 20/163 (12%), Positives = 49/163 (30%), Gaps = 9/163 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + +A+ I Q+ ++ V G LS+++ R + P Sbjct: 69 FTRQLATLTSV-STLEEALRTIALQADKPKLKQVIGEVHAAVLEGYRLSDAMGRPAKAFP 127 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G L L L+ +L ++ ++AK+ + A + + Sbjct: 128 P-----LYRAMVAAGESSGALPAILDRLADLLEQQQQVRAKITTALVYPIVLAVVACLVV 182 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA--AFMLIGIMV 178 + V + + L + G ++ Sbjct: 183 AALMVFVIPKVVEQFDSMGQTLPLLTRLVIGLSTGLQTFGWLI 225 >gi|330820178|ref|YP_004349040.1| type II secretion system protein [Burkholderia gladioli BSR3] gi|327372173|gb|AEA63528.1| type II secretion system protein [Burkholderia gladioli BSR3] Length = 396 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 24/169 (14%), Positives = 52/169 (30%), Gaps = 9/169 (5%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--PVRSEFRRVIETQHLGLS 64 +R +F L + + AGL + +A+ + GQ + RV+ G Sbjct: 53 RRQPRF--ALALFLQELSTLLDAGLVLIEALEALHGQRDGGRQAQQVIGRVLAVMVEGQP 110 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 S +++R P ++ G L E L + + ++ +V + Sbjct: 111 FSAALARQPGIFP-----ALLVATIESAEGNGQLPEVLRRYQQYEHRIEQIRKRVTGAMV 165 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + + ++ V L P L+ + + Sbjct: 166 YPGVVIGVGFCILLFMAFFVIPRFSAVFEALSTLPPTARLMLAWSGLLA 214 >gi|302559125|ref|ZP_07311467.1| integral membrane protein [Streptomyces griseoflavus Tu4000] gi|302476743|gb|EFL39836.1| integral membrane protein [Streptomyces griseoflavus Tu4000] Length = 308 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 62/156 (39%), Gaps = 4/156 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + LD++ S+ G + +A+ S R + Sbjct: 154 VRRDAADKRRDLRRVIGAYLDLVSMSLAGGRGLPEALMAAAEVSDGWATHRIRNALADAR 213 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + S +++ ++ + ++E+ S +++ + G + E+LA+ + +R R+ + + Sbjct: 214 ITGISQWQALGQLGEELGVEELKDLSASLALVADDGAKVRESLASRAETMRHRELSEIE- 272 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 S K+ + ++ L C LV+ P M V Sbjct: 273 --GSAGEKSQSMLVAQLLLCAGFLVFLIFPAAMRVF 306 >gi|218290610|ref|ZP_03494712.1| hypothetical protein AaLAA1DRAFT_2298 [Alicyclobacillus acidocaldarius LAA1] gi|218239394|gb|EED06591.1| hypothetical protein AaLAA1DRAFT_2298 [Alicyclobacillus acidocaldarius LAA1] Length = 278 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 64/180 (35%), Gaps = 5/180 (2%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ ++ D A+++ V AG V + + + P+++ F R + L++ Sbjct: 98 ERWMIRYEDGVRQAVELGTGIVEAGGTVEEWILQGEREIEGPLQAVFARGAQQVRERLAV 157 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ + P S+ + GG+L ++ ++ K + + + Sbjct: 158 ADWLRYTADTTPSNYWSYVCNGVLSHLDSGGDLVRFFVEVA----RELQVREKYRRVMAQ 213 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + A + +Y ++ L+ +P +L VA ++ R M Sbjct: 214 QRKEATQLLLAMLVSPAALYLMFRRSLDNLMQAEPFMQVLFAVALVGYVVLFWFARRMAR 273 >gi|324009018|gb|EGB78237.1| general secretion pathway protein F [Escherichia coli MS 57-2] Length = 398 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 26/198 (13%), Positives = 60/198 (30%), Gaps = 29/198 (14%) Query: 5 IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLG 62 +K R + + + A LP+ +++AVI Q S++ + +V G Sbjct: 49 VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNNRLADVLNQVRSAILEG 108 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS+++ + + G L+ L L+ +R+ +++K+ Sbjct: 109 HPLSDALQHFPTL-----FDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQS 163 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND-------------------PRGHM 163 + + V L+ P ++ G Sbjct: 164 LIYP---CMLTTVAIVVVIILLTVVVPKITEQFVHMKQQLPLSTRILLGLSDTLQHTGPT 220 Query: 164 LLGVAAAFMLIGIMVMRL 181 LL + + ++ Sbjct: 221 LLATVFIVAVGFWLWLKR 238 >gi|300023663|ref|YP_003756274.1| type II secretion system F domain protein [Hyphomicrobium denitrificans ATCC 51888] gi|299525484|gb|ADJ23953.1| Type II secretion system F domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 403 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 22/165 (13%), Positives = 49/165 (29%), Gaps = 6/165 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRM 72 + ++AGLP+ A+ + + S + RV G SL E++ Sbjct: 66 RQITLFTRELGMLLKAGLPLDQALTFLERDAGSKSLARLIGRVGTEISSGKSLCEALEMQ 125 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P + ++ G L L ++ + +K+ + + + Sbjct: 126 GGAFPPIYSR-----MVRVAEASGTLETVLERIAAGREKAQKLKSMALSELLYPCLLILM 180 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + T+V + + A+ LI Sbjct: 181 AIAAVTIMLTVVVPRFKDMIGNAGTQIPDQARFVIGASDWLIANW 225 >gi|327310804|ref|YP_004337701.1| type II secretion system protein [Thermoproteus uzoniensis 768-20] gi|326947283|gb|AEA12389.1| type II secretion system protein [Thermoproteus uzoniensis 768-20] Length = 250 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 73/190 (38%), Gaps = 15/190 (7%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE- 67 A+ P+AL I +V GL + A V+ P+ FRRV+ +G + + Sbjct: 32 RARLESQIPDALRAIADAVSGGLDLRSAFEVVSTLGLSPIADVFRRVVALSSVGGATAPD 91 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL----ANLSRILRDRKNMKAKVQALS 123 ++ + + + F+ ++ ++ G L E L + ++ R+++ A+++ Sbjct: 92 ALWSVAEELGVPNFKRFALIVVEAARSGAKLPEVLGTAARTFATVVEFRRDLSAQLRPYV 151 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL---------INDPRGHMLLGVAAAFML- 173 + A + +L + + + I+ P +L + A Sbjct: 152 LLYYAVVGVFAALSDVLVYFMLPRLAQLTAQVSNAAIRPATISTPDALAVLLLTAILQAL 211 Query: 174 IGIMVMRLMI 183 +G +V+ + Sbjct: 212 VGGLVVGRVT 221 >gi|325678255|ref|ZP_08157883.1| type II secretion system protein F domain protein [Ruminococcus albus 8] gi|324110018|gb|EGC04206.1| type II secretion system protein F domain protein [Ruminococcus albus 8] Length = 290 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 61/149 (40%), Gaps = 1/149 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 I+K ++ DFPNA+ I V G+ + +A + S +P+ + R V++ + G+ Sbjct: 140 KIEKMNETYMRDFPNAVSTIALLVNGGMFLREAWKQVAISSDEPLYVQMRGVVDDMNNGV 199 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAKVQAL 122 S +++ R +E+ FST I+ + +L++ L + +L + K Q Sbjct: 200 SEIDALFRFANRCSTKEIRKFSTTITQAIESDGTHLADTLIKQADLLLNEKKQMVLQQGE 259 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 K I + ++ Sbjct: 260 KASNKLMFPIGLIFIGVLVMIMVPILSNM 288 >gi|219882751|ref|YP_002477915.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] gi|219861757|gb|ACL42098.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] Length = 456 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 19/151 (12%), Positives = 48/151 (31%), Gaps = 7/151 (4%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 L + +R G + A+ ++ Q + E R + M + Sbjct: 117 LRALTMVLRVGESEARALEIVGEQ---YHKYEIGRAY-EHAAKTMREDGAGFKQALMAEE 172 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + S L + L + +L + +N+K ++ ++ + L Sbjct: 173 VLPRTVRELIEASHTSTALQKNLQVAATLLGESQNVKKELLMNLIQPGFMMAMCIGL--- 229 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + T V PG+++ + + + Sbjct: 230 LFTAVTVIIPGFISTFASLGAETPPMTLVIL 260 Score = 36.3 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 12/137 (8%), Positives = 43/137 (31%), Gaps = 5/137 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 ++ ++ G+ ++ + + L L + ++ Sbjct: 320 LFQLLSANLDTGIGEPQSLKSAANGCGNEALKHHCITHAEKMLNDGLP-----LKDFIKT 374 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + V + + + E + L+ R+ N++ K + +++ + + G Sbjct: 375 KLVPSDARNLLGSAPSIRQEIEIMNELAPEYRNEANVQLKTLSKTLDPIINYMVYGVAGL 434 Query: 139 CVSTLVYFTSPGYMNVL 155 + +V Y ++ Sbjct: 435 LIVAIVLPMYAIYPALM 451 >gi|304396577|ref|ZP_07378458.1| Type II secretion system F domain protein [Pantoea sp. aB] gi|304356086|gb|EFM20452.1| Type II secretion system F domain protein [Pantoea sp. aB] Length = 399 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 19/179 (10%), Positives = 53/179 (29%), Gaps = 19/179 (10%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + + ++AGLP+++++ ++ + LS + Sbjct: 63 DLIRQLATLLKAGLPLAESLVLLAEGQPHAGWRALMLALH----HRVLSGAPFSQALREW 118 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 Q + +L G L + L++ ++ + +V + ++ Sbjct: 119 PQIFPALYPSLMEVGELTGQLDVCCSELAQQQIRQQQLWHQVGKALRYPLFILLVAMAVT 178 Query: 138 FCVSTLVYFTS-----------PGYMNVLINDPRGHM----LLGVAAAFMLIGIMVMRL 181 + V P + ++ +L + + ML G +R Sbjct: 179 CGMLLFVLPEFVAVYDAFDAPLPAFTAAVMQLSAALQEWGGVLTLGVSLMLTGWHQLRR 237 >gi|269128336|ref|YP_003301706.1| type II secretion system protein [Thermomonospora curvata DSM 43183] gi|268313294|gb|ACY99668.1| type II secretion system protein [Thermomonospora curvata DSM 43183] Length = 304 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 64/158 (40%), Gaps = 4/158 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +R F LD++ ++ G V +A+ R + Sbjct: 150 LRQEAAQRRRDFRHVVGAFLDLVAMNLAGGRGVPEALMTAAQVGDGWAMVRIREALANAR 209 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + + +++ R+ + + E+ + +++ + G + ++LA + +R R+ + + Sbjct: 210 IVGQTPWQALGRLGEEVNVAELRDLAAALTLVADDGAKIRQSLAARAASMRSRELSELEG 269 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + ++ + +I L FC LV+ P + +L+ Sbjct: 270 K---AGERSQSMLIAQLLFCFGFLVFLGFPALIRILVT 304 >gi|34762869|ref|ZP_00143853.1| General secretion pathway protein F [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887477|gb|EAA24563.1| General secretion pathway protein F [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 346 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 66/170 (38%), Gaps = 13/170 (7%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGL 63 +K + K L + + +++GL + A+ +I+ + D E +++ + G Sbjct: 1 MKNKKEKIL----FFTNELAIMLKSGLTFTTAIEIILKEEKDKNFKEVLKKIHKNLIAGK 56 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S+ ES R + ++ G+++E L ++S+ L + K+ + Sbjct: 57 SIFESFKNFDRIFGN-----TYLYMLKIGEVSGSIAERLEDISKSLEFDLANQKKLGGIL 111 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + +I V+ L+ F P ++ + + L+ F+ Sbjct: 112 VYPI---VVISLTFTIVTFLLTFILPNFITIFEENQVELPLITRILLFIS 158 >gi|167834845|ref|ZP_02461728.1| general secretion pathway protein F [Burkholderia thailandensis MSMB43] Length = 216 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 49/148 (33%), Gaps = 6/148 (4%) Query: 36 AVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQL 94 A+AV+ Q+ D +R + G SL+ ++++ R + + + Sbjct: 1 ALAVLTEQAERDYIRELMAAIRAEVLGGHSLANALAQHPR-----DFPEIYRALVAAGEH 55 Query: 95 GGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 G L L+ L+ + +R +K K+ I + + + V Sbjct: 56 TGKLGIVLSRLADYIEERNALKQKILLAFTYPAIVTVIAFGIVTFLLSYVVPQVVNVFAS 115 Query: 155 LINDPRGHMLLGVAAAFMLIGIMVMRLM 182 ++ +A + + L+ Sbjct: 116 TKQQLPLLTIVMMALSDFVRHWWWAILI 143 >gi|330465239|ref|YP_004402982.1| hypothetical protein VAB18032_06290 [Verrucosispora maris AB-18-032] gi|328808210|gb|AEB42382.1| hypothetical protein VAB18032_06290 [Verrucosispora maris AB-18-032] Length = 422 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 72/201 (35%), Gaps = 29/201 (14%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVS---DAV----------AVIVGQSSDPVRS 50 ++ R + L + +RAGLPV +A+ + ++ P Sbjct: 221 RVRARRERLDQ-----LCALAADLRAGLPVPVAAEALGLVRSVSTVRRELAASATGPTAR 275 Query: 51 EFR---------RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEA 101 R V LSES R+ +++ + + + G L++ Sbjct: 276 AQRPDKPVLPDPVVPGNSTSTGDLSESAGRLAAPDRPGQLAQ--AAVRLADRTGAPLADL 333 Query: 102 LANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + + R A A + A+A+AW++ +LP L Y + VL++ P G Sbjct: 334 IERIEADARSADRAVAAAAAQAAGARATAWLLAALPLGGIALGYGIGADPLQVLLHTPIG 393 Query: 162 HMLLGVAAAFMLIGIMVMRLM 182 A A ++G++ + Sbjct: 394 GACAVTAIALQVVGLLWADRL 414 >gi|218677457|ref|ZP_03525354.1| probable pilus assembly protein [Rhizobium etli CIAT 894] Length = 67 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 43/66 (65%), Positives = 54/66 (81%) Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 LSMEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH+++G++ +M IGI VMR Sbjct: 2 LSMEAKASAVIIGALPFIVATLVYLTSPNYMMILFTDPRGHLIMGISGIWMSIGIFVMRN 61 Query: 182 MINFDV 187 M+NFD+ Sbjct: 62 MVNFDI 67 >gi|119714031|ref|YP_919173.1| integral membrane protein [Nocardioides sp. JS614] gi|119525940|gb|ABL79310.1| integral membrane protein [Nocardioides sp. JS614] Length = 302 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 20/147 (13%), Positives = 54/147 (36%), Gaps = 1/147 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ KR + D + LD++V S+ G +DA+ + + I+ Sbjct: 148 LRETAGKRREELCDALSDFLDLVVMSMEGGRSHADALPTVAQIGTGWAFHTIYDAIDNAR 207 Query: 61 -LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G++ E++ + + E+ +++ G ++ L ++ +RD + A Sbjct: 208 PNGMTPWEALGEVGERFGVVELLDLRASLNLAQDEGTSIRNTLIARAQSMRDARLADAHA 267 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146 +A ++ + ++ Sbjct: 268 RANKSTDAMRNNLMVMALVAAAYVILA 294 >gi|162146307|ref|YP_001600766.1| general secretion pathway protein F [Gluconacetobacter diazotrophicus PAl 5] gi|209543690|ref|YP_002275919.1| type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] gi|22128724|gb|AAM92869.1| LsdF [Gluconacetobacter diazotrophicus] gi|161784882|emb|CAP54425.1| putative general secretion pathway protein F [Gluconacetobacter diazotrophicus PAl 5] gi|209531367|gb|ACI51304.1| type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] Length = 409 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/146 (9%), Positives = 41/146 (28%), Gaps = 7/146 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + AG + A+ +V + + + Sbjct: 75 LTRELAVMLGAGQDIDRALRFLVESVPGARARAVLGGVRDRVRDGQTLHA----AMARYP 130 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + ++ GG+L+ + L+ +L + + A VQ+ + + + Sbjct: 131 GSFPRLYIGMVRAAEAGGDLAPTMDRLATLLERERALAATVQSAMIYP---CILTLAACG 187 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHML 164 + L+ P + + + Sbjct: 188 SIVLLLTEVLPQFTPLFAQNGAELPA 213 >gi|188532947|ref|YP_001906744.1| type IV pilin biogenesis protein [Erwinia tasmaniensis Et1/99] gi|188027989|emb|CAO95846.1| Putative outer membrane protein export (MTB) system [Erwinia tasmaniensis Et1/99] Length = 399 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/152 (11%), Positives = 43/152 (28%), Gaps = 6/152 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMP 77 + ++AGLP+ + ++ + + + G S+++ P Sbjct: 64 FFRQLATLLKAGLPLPGCLQLLADGHPEAGWQALLLNLHQRISAGEPFSQALREWPDIFP 123 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + +L G+L E L+ ++ ++ KVQ + + Sbjct: 124 P-----LFPALVHIGELTGDLDECCLQLAIQQEQQQQLQHKVQKALRYPLFIIAVALLVS 178 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 + V G +A Sbjct: 179 IGMLVFVLPEFVAIYRSFNAPLPGFTKAVIAF 210 >gi|256027601|ref|ZP_05441435.1| general secretion pathway protein F [Fusobacterium sp. D11] gi|289765560|ref|ZP_06524938.1| general secretion pathway protein F [Fusobacterium sp. D11] gi|289717115|gb|EFD81127.1| general secretion pathway protein F [Fusobacterium sp. D11] Length = 346 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 66/170 (38%), Gaps = 13/170 (7%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGL 63 +K + K L + + +++GL + A+ +I+ + + E +++ + G Sbjct: 1 MKNKKEKIL----FFTNELAIMLKSGLTFTAAIEIILREEKEKNFKEVLKKIHKNLIAGK 56 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S+ E+ + + ++ G+++E L ++SR L + K+ + Sbjct: 57 SIFETFKNFDKIFGN-----TYLYMLKIGEVSGSITERLEDISRSLEFDLANQKKLGGIL 111 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + +I V+ L+ F P ++ + + L+ F+ Sbjct: 112 VYPI---VVISLTLIIVTFLLTFILPNFITIFEENQVELPLITRILLFIS 158 >gi|313888017|ref|ZP_07821695.1| type II secretion system F domain protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845972|gb|EFR33355.1| type II secretion system F domain protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 389 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/189 (11%), Positives = 63/189 (33%), Gaps = 21/189 (11%) Query: 9 TAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 KF +D + + +G+ + +A ++ Q + + ++ G LS+ Sbjct: 53 KKKFKNEDLYILFRQLSLFINSGINIENAFEILSSQFAKDKGKILSDIRDSLRSGSDLSD 112 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 S+ + + + +L + LS ++ ++K+ Sbjct: 113 SMK------MTRAFPSLVINMVYVGENTSSLGKIFDKLSDYYIKKRKTQSKIIEAMAYP- 165 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-----------AFMLIGI 176 ++ + F ++ L+ P + + ++ L F+++GI Sbjct: 166 --CILLLTSIFIINFLIINVIPSFGEIFSDNNNLLPLPTRVLMGFSNFVYKNYFFIILGI 223 Query: 177 MVMRLMINF 185 +++ + Sbjct: 224 LLVVAIAFI 232 >gi|53723518|ref|YP_102952.1| hypothetical protein BMA1286 [Burkholderia mallei ATCC 23344] gi|76808991|ref|YP_333345.1| hypothetical protein BURPS1710b_1946 [Burkholderia pseudomallei 1710b] gi|121599511|ref|YP_993094.1| type II secretion system protein [Burkholderia mallei SAVP1] gi|124383879|ref|YP_001026129.1| hypothetical protein BMA10229_A0121 [Burkholderia mallei NCTC 10229] gi|126450979|ref|YP_001080599.1| type II secretion system protein [Burkholderia mallei NCTC 10247] gi|126452133|ref|YP_001066062.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|242317541|ref|ZP_04816557.1| type II secretion system protein [Burkholderia pseudomallei 1106b] gi|254178228|ref|ZP_04884883.1| type II secretion system protein [Burkholderia mallei ATCC 10399] gi|254206225|ref|ZP_04912577.1| type II secretion system protein [Burkholderia mallei JHU] gi|254261112|ref|ZP_04952166.1| type II secretion system protein [Burkholderia pseudomallei 1710a] gi|254297789|ref|ZP_04965242.1| type II secretion system protein [Burkholderia pseudomallei 406e] gi|52426941|gb|AAU47534.1| membrane protein, putative [Burkholderia mallei ATCC 23344] gi|76578444|gb|ABA47919.1| membrane protein, putative [Burkholderia pseudomallei 1710b] gi|121228321|gb|ABM50839.1| type II secretion system protein [Burkholderia mallei SAVP1] gi|124291899|gb|ABN01168.1| putative membrane protein [Burkholderia mallei NCTC 10229] gi|126225775|gb|ABN89315.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|126243849|gb|ABO06942.1| type II secretion system protein [Burkholderia mallei NCTC 10247] gi|147753668|gb|EDK60733.1| type II secretion system protein [Burkholderia mallei JHU] gi|157807302|gb|EDO84472.1| type II secretion system protein [Burkholderia pseudomallei 406e] gi|160699267|gb|EDP89237.1| type II secretion system protein [Burkholderia mallei ATCC 10399] gi|242140780|gb|EES27182.1| type II secretion system protein [Burkholderia pseudomallei 1106b] gi|254219801|gb|EET09185.1| type II secretion system protein [Burkholderia pseudomallei 1710a] Length = 336 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66 +D+ P +D++ GL + ++ V+ + SE G + Sbjct: 182 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 241 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ R+ +++ ++ + GG + E L LR+ + + + + Sbjct: 242 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 301 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154 K + +I +L + + PG + V Sbjct: 302 KMTGVMILTLLPALF--IVTAGPGMLAV 327 >gi|292655314|ref|YP_003535211.1| type IV pilus biogenesis complex membrane subunit [Haloferax volcanii DS2] gi|291371306|gb|ADE03533.1| type IV pilus biogenesis complex membrane subunit [Haloferax volcanii DS2] Length = 680 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 56/178 (31%), Gaps = 9/178 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLP---VSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 R + +A+ + GL + +A+A + V EF+ +++ Sbjct: 145 ASARKREINMLLSDAVSFMYALSVGGLNQLEILEAMAR-AEDTYGEVSREFQSIVQETEY 203 Query: 62 GL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +I + P E+S F T + GG++ L + + + Sbjct: 204 FGTDYRNAIRQQALLTPSDELSQFLTDMLSIVNSGGDMQGFLDDKKDKHLRTAKQQQEQT 263 Query: 121 ALSMEAKASAWII----GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 +ME ++ L + ++ +L G + L +L+ Sbjct: 264 LETMELFGEMYMTLSLFPLLLIIILVIMSMLGEAQSRLLYATVYGLIPLTGVGFLVLV 321 >gi|294792016|ref|ZP_06757164.1| putative bacterial type II secretion system protein F domain protein [Veillonella sp. 6_1_27] gi|294457246|gb|EFG25608.1| putative bacterial type II secretion system protein F domain protein [Veillonella sp. 6_1_27] Length = 390 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/159 (13%), Positives = 56/159 (35%), Gaps = 13/159 (8%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + + +G+P+ A+ ++ +RV+ L S+ + + + + Sbjct: 60 DVTYQLGLLIESGVPLRRALQLLCQ---------GKRVLLYTALYESIERGQT-LSQALR 109 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + + G L E+L +SR + +K KV + +++ + Sbjct: 110 SEGCPPIALALLESGEAAGTLGESLQYISRHYDWERQLKQKVMSAISYPL---FLLLMMN 166 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + F P + V L+ A + G+ Sbjct: 167 IFFLVTILFIIPSFEKVFTTMHITLPLMTRALFALGQGL 205 >gi|88604392|ref|YP_504570.1| type II secretion system protein [Methanospirillum hungatei JF-1] gi|88189854|gb|ABD42851.1| type II secretion system protein [Methanospirillum hungatei JF-1] Length = 296 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/179 (11%), Positives = 57/179 (31%), Gaps = 5/179 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRSEFRRVIETQHLGLSL 65 R P A++ + AG+ ++ + + + ++E G L Sbjct: 115 RRRDIETTLPYAINYLAAMSTAGITPAEVFRQLGNSTIYGESSVEARYIILEVDVFGRDL 174 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ + P + F G N+S+ + K ++ Sbjct: 175 IEALKNVSMSTPSPRMRDFLQGCIGSVAAGSNISDYFRTKAEQYTGENRQTQKQFLDTLA 234 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A +++ + + ++ M +L + L + + G ++ ++I+ Sbjct: 235 LIAESYVTALVAGTLFMILI---QSIMAILSGESTPLFLYIIIYLIIPFGSVMFVVLID 290 >gi|322831065|ref|YP_004211092.1| general secretion pathway protein F [Rahnella sp. Y9602] gi|321166266|gb|ADW71965.1| general secretion pathway protein F [Rahnella sp. Y9602] Length = 405 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 51/174 (29%), Gaps = 6/174 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 + A LPV A+AVI Q+ + V G +L++++S Sbjct: 65 SHAISLFSRQLATLTNAALPVEAALAVIARQTEHAGLTQVLTAVRNKVVEGHTLADALSD 124 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 R + + G L L ++ R+ +K+K+ + Sbjct: 125 FPRLFDP-----MFRTLVTAGERTGQLGTVLEKMADYYEIRQQIKSKLSQAMIYPAMLTI 179 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 I + + V + + + + + L + ++ Sbjct: 180 IAILVIVILLVAVVPQIIEQFVHMKHTLPISTRILIGVSGFLERTWWVIAIVVI 233 >gi|292489336|ref|YP_003532223.1| type II secretion system protein OutF [Erwinia amylovora CFBP1430] gi|292898440|ref|YP_003537809.1| type II secretion system protein [Erwinia amylovora ATCC 49946] gi|291198288|emb|CBJ45394.1| type II secretion system protein [Erwinia amylovora ATCC 49946] gi|291554770|emb|CBA22572.1| Type II secretion system protein outF [Erwinia amylovora CFBP1430] gi|312173501|emb|CBX81755.1| Type II secretion system protein outF [Erwinia amylovora ATCC BAA-2158] Length = 401 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 48/179 (26%), Gaps = 20/179 (11%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + V A LP+ A+ + Q++ P I + L + + Sbjct: 67 MTRQLATLVGAALPLEQALLALEKQTTKPAGRTMLHAIRQKV----LEGASLADAVGLYP 122 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L L L+ + +K K+ + + S+ Sbjct: 123 ATFPPLYQAMIAAGEASGKLDNVLEQLADYSEKTQQIKGKLTQSMIYPLLLTLVAISVIT 182 Query: 139 CVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVMRL 181 + T V + + I G +L V +++R Sbjct: 183 ILLTAVVPSVVEQFVHMKQALPLSTRLLMSISEITRAIGLPVLLVILLAGFCARIILRR 241 >gi|281354923|ref|ZP_06241417.1| Type II secretion system F domain protein [Victivallis vadensis ATCC BAA-548] gi|281317803|gb|EFB01823.1| Type II secretion system F domain protein [Victivallis vadensis ATCC BAA-548] Length = 400 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 58/162 (35%), Gaps = 4/162 (2%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + A +P+ ++A+I +SD E R + T GL + S +VR Sbjct: 66 EFTSQLAPLLSANIPLERSLAIISESASD---DELRDLANTLRQGLHEGKKFSDLVRSYG 122 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 F + + G L E + L R + + K M+ V + S+ I + Sbjct: 123 -SVFPGFYANLIETGEETGCLPEVVEELQRFMSESKEMREFVVSSSIYPAVVLSITVMVA 181 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + T+ + + G M+ + +++ + Sbjct: 182 ILMFTVFVPRFAQIFADMGREQPGSMVFLTTVSTVIMHACWI 223 >gi|225414583|ref|ZP_03761772.1| hypothetical protein CLOSTASPAR_05806 [Clostridium asparagiforme DSM 15981] gi|225041899|gb|EEG52145.1| hypothetical protein CLOSTASPAR_05806 [Clostridium asparagiforme DSM 15981] Length = 403 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 52/162 (32%), Gaps = 7/162 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + AG+P++ V +I GQS D ++ V G L++S Sbjct: 64 KALSMVCSQFSVILAAGMPIAKCVGLIAGQSEDKRLKRILSNVARDVAAGYGLADSFETA 123 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G L + +LS R K KV A I Sbjct: 124 GKG----VLPLTFIETVRSGEQSGTLENSFESLSGFYERRYKTKQKVSAALTYPVFVMII 179 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFM 172 + V V T G + L D P L+ V+A F Sbjct: 180 AVVVMIVVMVKVIPTVSGIFDELGGDMPPSTKALISVSAFFQ 221 Score = 39.3 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 43/140 (30%), Gaps = 5/140 (3%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 L+ + + + AGLPV+ A+AV + + S +ET + L E Sbjct: 263 KISMLNASSQFANTMSTLLGAGLPVARALAVTAKTLDNYMLS-----LETSKMVTGLEEG 317 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + V + G L E L + R + + +E Sbjct: 318 RHLGTCMKECGCYPQTLNDMCVIGEETGELEETLKTIGRYFDNEAEHATQKALSKLEPAI 377 Query: 129 SAWIIGSLPFCVSTLVYFTS 148 I G F V ++ Sbjct: 378 LVLIAGIAGFIVISIYLPIF 397 >gi|282165240|ref|YP_003357625.1| hypothetical protein MCP_2570 [Methanocella paludicola SANAE] gi|282157554|dbj|BAI62642.1| conserved hypothetical protein [Methanocella paludicola SANAE] Length = 296 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/140 (14%), Positives = 46/140 (32%), Gaps = 1/140 (0%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSES 68 A+ P + V+A + A+ + + E R++ ++ + Sbjct: 75 AEVEAKAPELFYDLSEQVKASGSIVKALKRVSRHEYGTISDEVCRMLSEIEEEGYDIASA 134 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + M + V +VI NL L ++ R +++K + QA + Sbjct: 135 LRAMALRTKNRYVDRSVSVIIEALTTSSNLESILKAVASEGRLAQSLKKERQAGISSSVF 194 Query: 129 SAWIIGSLPFCVSTLVYFTS 148 + + V+ L + Sbjct: 195 VIYFTAIIFLAVTMLCITSF 214 >gi|4680725|gb|AAA91205.2| VvpC [Vibrio vulnificus] Length = 409 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/129 (11%), Positives = 43/129 (33%), Gaps = 6/129 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 D + + G+P+ ++ ++ ++S V + G LS+++ Sbjct: 68 KDITLLTRQLATMLTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTLLSKALRSA 127 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + GNL + L+ + ++AKV + + + Sbjct: 128 S-----PQFDGIYVDLVATGEQSGNLDQVFERLAFYREKNEQLRAKVIKALIYSCMVVLV 182 Query: 133 IGSLPFCVS 141 + + + Sbjct: 183 ALGVSYLML 191 Score = 35.9 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 11/136 (8%), Positives = 37/136 (27%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + S AG+P+ ++ + + + V G+ + ++ Sbjct: 273 AAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAAGMPMYIAMRN- 331 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G + + L ++ I + +E ++ Sbjct: 332 -----SLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFL 386 Query: 133 IGSLPFCVSTLVYFTS 148 + V+ + Sbjct: 387 GVVVGGLVTAMYLPIF 402 >gi|251767749|ref|ZP_02268267.2| type II secretion system protein [Burkholderia mallei PRL-20] gi|254188637|ref|ZP_04895148.1| type II secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|157936316|gb|EDO91986.1| type II secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|243061818|gb|EES44004.1| type II secretion system protein [Burkholderia mallei PRL-20] Length = 339 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66 +D+ P +D++ GL + ++ V+ + SE G + Sbjct: 185 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 244 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ R+ +++ ++ + GG + E L LR+ + + + + Sbjct: 245 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 304 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154 K + +I +L + + PG + V Sbjct: 305 KMTGVMILTLLPALF--IVTAGPGMLAV 330 >gi|329121629|ref|ZP_08250250.1| type IV pilus assembly protein [Dialister micraerophilus DSM 19965] gi|327468784|gb|EGF14261.1| type IV pilus assembly protein [Dialister micraerophilus DSM 19965] Length = 392 Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 43/137 (31%), Gaps = 6/137 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + +GL V + + ++ + R++ + G S+SES+ + Sbjct: 65 FASEWASLIESGLSVIETLDILEMNRKEKEIKVIRKIKNSITSGFSISESLEKTS----- 119 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 E F + + G L L + + M+ K+ L + + Sbjct: 120 -EFPSFFISMVKIGEATGTLPLQLETAADYYKKEHKMRKKLTELFAYPVTVLIFSLIVLY 178 Query: 139 CVSTLVYFTSPGYMNVL 155 + TLV + Sbjct: 179 VIMTLVIPVFYELYQSM 195 >gi|283782634|ref|YP_003373388.1| hypothetical protein HMPREF0424_0121 [Gardnerella vaginalis 409-05] gi|283441234|gb|ADB13700.1| conserved domain protein [Gardnerella vaginalis 409-05] Length = 191 Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 21/181 (11%), Positives = 60/181 (33%), Gaps = 13/181 (7%) Query: 15 DFPNALDIIVRSVRAGLPVS----------DAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 D L ++ ++R+G + + + + + R + + Sbjct: 2 DIEEVLAGMIAALRSGSTFAMIVHSDSKSQQCICSNAVNTKIIYKWLYERCFPKKR---N 58 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++++ R + + + LG ++E + + +K + ++ Sbjct: 59 MNKTQRRQLEKHMHTVSESLMASYELSNTLGCVMAECVEATAASYHAQKRAEDLRADVAA 118 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 KA+ ++ +LP + +LI G +LL + +G+ + M+ Sbjct: 119 MPKATIKLLTALPILALFAGELLGGHPILMLITTVNGWILLTIGGICYGLGLAWVSSMLQ 178 Query: 185 F 185 Sbjct: 179 I 179 >gi|226196329|ref|ZP_03791911.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|225931546|gb|EEH27551.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] Length = 338 Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66 +D+ P +D++ GL + ++ V+ + SE G + Sbjct: 184 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 243 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ R+ +++ ++ + GG + E L LR+ + + + + Sbjct: 244 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 303 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154 K + +I +L + + PG + V Sbjct: 304 KMTGVMILTLLPALF--IVTAGPGMLAV 329 >gi|126442067|ref|YP_001058811.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|134282402|ref|ZP_01769107.1| type II secretion system protein [Burkholderia pseudomallei 305] gi|126221560|gb|ABN85066.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|134246440|gb|EBA46529.1| type II secretion system protein [Burkholderia pseudomallei 305] Length = 340 Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66 +D+ P +D++ GL + ++ V+ + SE G + Sbjct: 186 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 245 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ R+ +++ ++ + GG + E L LR+ + + + + Sbjct: 246 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 305 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154 K + +I +L + + PG + V Sbjct: 306 KMTGVMILTLLPALF--IVTAGPGMLAV 331 >gi|310826271|ref|YP_003958628.1| Tfp pilus biogenesis protein PilC [Eubacterium limosum KIST612] gi|308738005|gb|ADO35665.1| Tfp pilus biogenesis protein PilC [Eubacterium limosum KIST612] Length = 362 Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 20/168 (11%), Positives = 55/168 (32%), Gaps = 8/168 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRM 72 + ++ AG+ + DA+ + + + E +V G S SE++ Sbjct: 20 RMLGLFCRQMAITLSAGVSIIDALELSGREHKNSGFGEAVLQVKILVKHGNSFSEALRSF 79 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P + ++ G + + NL + ++++++ + Sbjct: 80 PKVFP-----ELMVQMVRSGEMSGCMDLVMENLGIYYEGQADLRSRIAQAFFYPSLVMVV 134 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMV 178 + + V + + +L+GV+ A + G + Sbjct: 135 AVGVVMYLMAGVLPVFVEIFESMEAELPLTTEILMGVSTALISSGGWI 182 >gi|154151893|ref|YP_001405511.1| type II secretion system protein [Candidatus Methanoregula boonei 6A8] gi|154000445|gb|ABS56868.1| type II secretion system protein [Methanoregula boonei 6A8] Length = 652 Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 68/168 (40%), Gaps = 5/168 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 + P+ L+ + R GL ++ A+ ++V + + E RR+ G + SE Sbjct: 423 KVKGIQSMIPDFLERMAGINRVGLTIAQAIGIMVNTNLGLLSYEIRRIKRDMDWGANFSE 482 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ R + + ++ T+I+ S++ G + E LA + + + +K + E Sbjct: 483 ALMRFEQRISTASIARTVTLITKASEMTGQIGEVLAIAASDAKMSETLKKER---LAEMF 539 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 I+ F +V S ++ VL + G + + +G Sbjct: 540 IYTAIVYLSFFVFLFVVAVLSTQFLPVLAH--IGTAGISGSGPLSGLG 585 Score = 41.3 bits (95), Expect = 0.067, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 66/179 (36%), Gaps = 8/179 (4%) Query: 8 RTAKFLDDFPNALDIIVRSVRAG---LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL- 63 R+ K NA+ + R G + + A++ V EFR++ Sbjct: 125 RSIKINLTLHNAVAYMYAMRRGGAELMSIFYALSENAP-IYGEVALEFRQITRDVDYFGS 183 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++ + P ++ F + + GG+LSE LA+ R+ ++ + K Sbjct: 184 DMLTAMRHLSSTTPSAKLKDFLEDLLSVIESGGDLSEFLASRVRLYQEEARFEQKQFLTL 243 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + A +++ + + ++ M ++ + L V A + + + L+ Sbjct: 244 LSMVAESYVTLFVAGPLFLIIIMVV---MGMMGGSAVLQLSLVVYAIMPIGSFIFILLI 299 >gi|126640447|ref|YP_001083431.1| general secretion pathway protein F [Acinetobacter baumannii ATCC 17978] Length = 333 Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 10/152 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + V A +P+ +A+ + QS V++ V G SL++ + + R+ Sbjct: 1 MTRQLSVLVAAAIPLEEALRAVSRQSEKAHVQNLLLSVRSKVLEGHSLAQGMQQSGRFPD 60 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + G+L L LS +R M+ KVQ + + + Sbjct: 61 ------LYIATVAAGERSGHLDLILDQLSDYTENRFAMQKKVQGAMIYPIILMLMSFGI- 113 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 V L+ + P + + VA Sbjct: 114 --VMGLMTYVVPEIVKTFDQSKDALPWITVAL 143 >gi|325107203|ref|YP_004268271.1| type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] gi|324967471|gb|ADY58249.1| Type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] Length = 345 Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 18/178 (10%), Positives = 47/178 (26%), Gaps = 14/178 (7%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + +G+ A + S +R +++ G ++ S+ Sbjct: 9 KSLALMCRSLSTLLDSGVAADKAFRIAGEKSGSATIRETSASIVDEIKRGNDIATSLEE- 67 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 Q + ++ G L E L L+ + ++ + Sbjct: 68 -----QQVYPALMVSMVHVAEQTGTLPEILRGLADHYENLVRLRKDFYQAISWPVIQLVL 122 Query: 133 IGSLPFCVSTLVYFTS----PGYMNVLINDPRGHMLLGVAAAFMLIG---IMVMRLMI 183 + + L+ + ++VL G + G + M+ Sbjct: 123 AVFVIAGLIFLLGMIADSNQSEPIDVLGWGLTGTSGALTWLGLVFGGAFSFFICYRML 180 >gi|289625308|ref|ZP_06458262.1| type II secretion system protein F domain [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647833|ref|ZP_06479176.1| type II secretion system protein F domain [Pseudomonas syringae pv. aesculi str. 2250] gi|330867142|gb|EGH01851.1| type II secretion system, protein F domain [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330871030|gb|EGH05739.1| type II secretion system, protein F domain [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 294 Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 67/157 (42%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 + + ++R + + + + ++ +G+ V A+ V+ + E R V+ Sbjct: 134 LAAVAQRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSLEGKDLLPVLSEEIRVVLV 193 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL L E + + + + E+S +++ GG ++L L +++ DR+ + Sbjct: 194 RVDSGLELGEELRKTAALLAVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 253 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + AK S ++ L + ++ PG++ + Sbjct: 254 QEYISKLSAKMSVVMMVFLFPALLIVL--AGPGFIAI 288 >gi|239625545|ref|ZP_04668576.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519775|gb|EEQ59641.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 352 Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 11/142 (7%), Positives = 40/142 (28%), Gaps = 5/142 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + + + +P+ + +A++ ++D + + Sbjct: 14 RELAAFCLQVSLLLESAVPLDEGLAIMAEDAADKKEKDMLLYMAEGVELGDP-----FFK 68 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + ++ Q G + + + +LS + ++ ++ Sbjct: 69 VLEDTKVFPDYVVKMAKLGQSTGTMDQMMKSLSVYYEKEYRLIQAIKNAVTYPVMMVIML 128 Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155 + F + T V L Sbjct: 129 LVVLFVLFTRVMPVFNKVYEQL 150 >gi|315037963|ref|YP_004031531.1| Competence protein [Lactobacillus amylovorus GRL 1112] gi|312276096|gb|ADQ58736.1| Competence protein [Lactobacillus amylovorus GRL 1112] Length = 333 Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 21/173 (12%), Positives = 61/173 (35%), Gaps = 14/173 (8%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + LD + S+ G + +++ + + + + + E + + Sbjct: 15 EEQLA-FLDYLKHSLDNGFSLINSIEL--------MPALWPKRKELMRKLAMRMKEGANF 65 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + S + + GNL+E L L+ + R ++ K+++ A + Sbjct: 66 SSELVKLGFSKTTVTQVNLALQQGNLTECLNQLATLNRLKQEQVKKLRSELSYPFVLAIM 125 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + L + + + ++ G +++ V +L+GI + ++ Sbjct: 126 MVVLLVFMQSFISTQFSD-----TSEHSGDLVMLVLIGLVLVGIYFLAKIVTL 173 >gi|53719505|ref|YP_108491.1| putative outer-membrane protein [Burkholderia pseudomallei K96243] gi|52209919|emb|CAH35891.1| putative outer-membrane protein [Burkholderia pseudomallei K96243] Length = 341 Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66 +D+ P +D++ GL + ++ V+ + SE G + Sbjct: 187 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 246 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ R+ +++ ++ + GG + E L LR+ + + + + Sbjct: 247 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 306 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154 K + +I +L + + PG + V Sbjct: 307 KMTGVMILTLLPALF--IVTAGPGMLAV 332 >gi|309389143|gb|ADO77023.1| Type II secretion system F domain protein [Halanaerobium praevalens DSM 2228] Length = 343 Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 13/150 (8%), Positives = 45/150 (30%), Gaps = 5/150 (3%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +++GL ++ + ++ QS +E +L ++ ++ + Sbjct: 14 QLKIMLQSGLSLNRTLLIMAQQSRSEREAEIY-----SNLLKNIESGLTLASALKEEKIF 68 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 I + G+L L +L + + +K +++ + F + Sbjct: 69 KDLFIEIVRAGEKSGSLVSVLTSLEEYYKSKNELKKEIKKACFYPLTVIITLILAAFFIF 128 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 + + ++ + Sbjct: 129 KFILPVFVDLFAEFNGQLPFLTRILLSLSL 158 >gi|291303313|ref|YP_003514591.1| hypothetical protein Snas_5869 [Stackebrandtia nassauensis DSM 44728] gi|290572533|gb|ADD45498.1| hypothetical protein Snas_5869 [Stackebrandtia nassauensis DSM 44728] Length = 242 Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 46/146 (31%) Query: 38 AVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN 97 Q+ + ++ R + ++ + + + + G Sbjct: 88 RATARQAVASLAADLRAGANAAPAIAATRTHLAATDDPVCRRIRDRLDATVHITETAGAP 147 Query: 98 LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 S L L+ LR + + + ASA ++ +LP L + L++ Sbjct: 148 TSRLLDQLAEDLRAEARIATTLTTNTAGILASARLLAALPVAGLALGQALGTRPLETLLH 207 Query: 158 DPRGHMLLGVAAAFMLIGIMVMRLMI 183 P G VA L G+ R ++ Sbjct: 208 TPVGAGCAAVAVTLQLAGLAWSRRIL 233 >gi|237743190|ref|ZP_04573671.1| general secretion pathway protein F [Fusobacterium sp. 7_1] gi|229433486|gb|EEO43698.1| general secretion pathway protein F [Fusobacterium sp. 7_1] Length = 346 Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 65/170 (38%), Gaps = 13/170 (7%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGL 63 +K + K L + + +++GL + A+ +I+ + D E R + + G Sbjct: 1 MKNKKEKIL----FFTNELAIMLKSGLTFTTAIEIILKEEKDKNFKEVLRKIHKNLIAGK 56 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S+ ES + + ++ G+++E L ++SR L + K+ + Sbjct: 57 SIFESFKNFDKIFGN-----TYLYMLKIGEVSGSITERLEDISRSLEFDLANQKKLGGIL 111 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + +I V+ L+ F P ++ + + L+ F+ Sbjct: 112 VYPI---VVISLTLIIVTFLLTFILPNFITIFEENQVELPLITRILLFIS 158 >gi|217423679|ref|ZP_03455180.1| type II secretion system protein [Burkholderia pseudomallei 576] gi|217393537|gb|EEC33558.1| type II secretion system protein [Burkholderia pseudomallei 576] Length = 336 Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66 +D+ P +D++ GL + ++ V+ + SE G + Sbjct: 182 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 241 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ R+ +++ ++ + GG + E L LR+ + + + + Sbjct: 242 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 301 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154 K + +I +L + + PG + V Sbjct: 302 KMTGVMILTLLPALF--IVTAGPGMLAV 327 >gi|254179954|ref|ZP_04886553.1| type II secretion system protein [Burkholderia pseudomallei 1655] gi|184210494|gb|EDU07537.1| type II secretion system protein [Burkholderia pseudomallei 1655] Length = 340 Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66 +D+ P +D++ GL + ++ V+ + SE G + Sbjct: 186 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 245 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ R+ +++ ++ + GG + E L LR+ + + + + Sbjct: 246 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 305 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154 K + +I +L + + PG + V Sbjct: 306 KMTGVMILTLLPALF--IVTAGPGMLAV 331 >gi|71733529|ref|YP_276554.1| type II secretion system protein F domain [Pseudomonas syringae pv. phaseolicola 1448A] gi|257483343|ref|ZP_05637384.1| type II secretion system protein F domain [Pseudomonas syringae pv. tabaci ATCC 11528] gi|298488955|ref|ZP_07006978.1| Type II/IV secretion system protein TadC, associated with Flp pilus assembly [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71554082|gb|AAZ33293.1| type II secretion system protein F domain protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|298156453|gb|EFH97550.1| Type II/IV secretion system protein TadC, associated with Flp pilus assembly [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320322734|gb|EFW78827.1| type II secretion system protein F domain [Pseudomonas syringae pv. glycinea str. B076] gi|320330481|gb|EFW86460.1| type II secretion system protein F domain [Pseudomonas syringae pv. glycinea str. race 4] gi|330887979|gb|EGH20640.1| type II secretion system, protein F domain [Pseudomonas syringae pv. mori str. 301020] gi|330989172|gb|EGH87275.1| type II secretion system protein F domain [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012562|gb|EGH92618.1| type II secretion system protein, F domain [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 294 Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 67/157 (42%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 + + ++R + + + + ++ +G+ V A+ V+ + E R V+ Sbjct: 134 LAAVAQRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSLEGKDLLPVLSEEIRVVLV 193 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL L E + + + + E+S +++ GG ++L L +++ DR+ + Sbjct: 194 RVDSGLELGEELRKTAALLAVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 253 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + AK S ++ L + ++ PG++ + Sbjct: 254 QEYISKLSAKMSVVMMVFLFPALLIVL--AGPGFIAI 288 >gi|21222913|ref|NP_628692.1| integral membrane protein [Streptomyces coelicolor A3(2)] gi|7242745|emb|CAB77319.1| putative integral membrane protein [Streptomyces coelicolor A3(2)] Length = 302 Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 62/156 (39%), Gaps = 4/156 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + LD++ S+ G + +A+ S R + Sbjct: 148 VRRDAADKRRDLRRVIGAYLDLVSMSLAGGRGLPEALMAAAEVSDGWATHRIRNALADAR 207 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + S +++ ++ + ++E+ S +++ + G + E+LA+ + +R R+ + + Sbjct: 208 ITGISQWQALGQLGEDLGVEELKDLSASLALVADDGAKVRESLASRAETMRHRELSEIE- 266 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 S K+ + ++ L C LV+ P M V Sbjct: 267 --GSAGEKSQSMLVAQLLLCAGFLVFLIYPAAMRVF 300 >gi|197302282|ref|ZP_03167341.1| hypothetical protein RUMLAC_01009 [Ruminococcus lactaris ATCC 29176] gi|197298713|gb|EDY33254.1| hypothetical protein RUMLAC_01009 [Ruminococcus lactaris ATCC 29176] Length = 410 Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 21/146 (14%), Positives = 40/146 (27%), Gaps = 9/146 (6%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--------SSDPVRSEFRRVIETQHLGL 63 D+P ++ + AG+ V +A I E Sbjct: 260 MRRDYPQIINRFSLYIGAGMSVRNAWQRITEDYRKNKERTGRRKAYEEMIYTENQMKNKA 319 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + SE L F T++S + LSE L + + + + +A+ Sbjct: 320 AESECYEEYGIRCGLSVYRRFGTLLSQNLRKGSKGLSELLKRETGEMFEERKKQARKLGE 379 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTS 148 K + L ++ Sbjct: 380 EAGTKLMIPLFMMLAVVFIIVIVPAF 405 >gi|299532823|ref|ZP_07046210.1| type II secretion system protein [Comamonas testosteroni S44] gi|298719047|gb|EFI60017.1| type II secretion system protein [Comamonas testosteroni S44] Length = 311 Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 62/158 (39%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 ++ + +R A + P +D++ G+ + + VI + E + + Sbjct: 148 LRSVAGRRRASVARELPLLVDLLGLLQGTGMSLDQTLQVIGSDFGNVMPVLSREIKLANQ 207 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + S RM ++ ++++ + GG + E L LR+++ K Sbjct: 208 QYSRGSTRERSFGRMSEVYQNDNLANLTSLMIQIDRYGGAVQEPLRIFGERLREQRKAKM 267 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 K + K +A ++ +L + + PG++ V+ Sbjct: 268 KELIGKISVKMTAVMVVTLLPALI--IITAGPGFLAVI 303 >gi|256785971|ref|ZP_05524402.1| integral membrane protein [Streptomyces lividans TK24] gi|289769863|ref|ZP_06529241.1| integral membrane protein [Streptomyces lividans TK24] gi|289700062|gb|EFD67491.1| integral membrane protein [Streptomyces lividans TK24] Length = 306 Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 62/156 (39%), Gaps = 4/156 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + LD++ S+ G + +A+ S R + Sbjct: 152 VRRDAADKRRDLRRVIGAYLDLVSMSLAGGRGLPEALMAAAEVSDGWATHRIRNALADAR 211 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + S +++ ++ + ++E+ S +++ + G + E+LA+ + +R R+ + + Sbjct: 212 ITGISQWQALGQLGEDLGVEELKDLSASLALVADDGAKVRESLASRAETMRHRELSEIE- 270 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 S K+ + ++ L C LV+ P M V Sbjct: 271 --GSAGEKSQSMLVAQLLLCAGFLVFLIYPAAMRVF 304 >gi|301632374|ref|XP_002945261.1| PREDICTED: type 4 fimbrial assembly protein pilC-like [Xenopus (Silurana) tropicalis] Length = 184 Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 10/109 (9%) Query: 3 HLIKKRT---AKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIE 57 + K+R K D + ++AG+P+ A ++ + +P V + Sbjct: 51 KIKKRRMRAGKKIKPKDIALFTRQMATMMKAGVPLLQAFDIVGRGNPNPSVTKLLNDLRS 110 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLS 106 G SL+ + + + + + G L L LS Sbjct: 111 DVETGSSLNVAFRKYPL-----YFNNLYCNLVEAGEAAGILEMLLDRLS 154 >gi|237812071|ref|YP_002896522.1| type II secretion system protein [Burkholderia pseudomallei MSHR346] gi|237506289|gb|ACQ98607.1| type II secretion system protein [Burkholderia pseudomallei MSHR346] Length = 340 Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66 +D+ P +D++ GL + ++ V+ + SE G + Sbjct: 186 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 245 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ R+ +++ ++ + GG + E L LR+ + + + + Sbjct: 246 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 305 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154 K + +I +L + + PG + V Sbjct: 306 KMTGVMILTLLPALF--IVTAGPGMLAV 331 >gi|254197742|ref|ZP_04904164.1| type II secretion system protein [Burkholderia pseudomallei S13] gi|169654483|gb|EDS87176.1| type II secretion system protein [Burkholderia pseudomallei S13] Length = 340 Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66 +D+ P +D++ GL + ++ V+ + SE G + Sbjct: 186 QSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTRE 245 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ R+ +++ ++ + GG + E L LR+ + + + + Sbjct: 246 QSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTV 305 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154 K + +I +L + + PG + V Sbjct: 306 KMTGVMILTLLPALF--IVTAGPGMLAV 331 >gi|261854771|ref|YP_003262054.1| general secretion pathway protein F [Halothiobacillus neapolitanus c2] gi|261835240|gb|ACX95007.1| general secretion pathway protein F [Halothiobacillus neapolitanus c2] Length = 407 Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 57/176 (32%), Gaps = 8/176 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 + I + AGLP+ A++ I+ Q+ +R V G SL++ ++ Sbjct: 69 ELALFTRQISTLIAAGLPIDAALSGIIRQTENPRIRRIVTAVRSKVVEGHSLAQGLATFP 128 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R S + G+L L L+ R+ KVQ + Sbjct: 129 RA-----FSELYRATVAAGEESGHLEAVLERLADYTEGRQATTQKVQMALFYPALLTLMA 183 Query: 134 GSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 ++ + T V + P L+ V+A ++ M F + Sbjct: 184 VAVVIGLVTYVVPQVVQVFVQMKQTLPPLTRGLIAVSAFLREQWPWILLGMAAFAI 239 >gi|145591089|ref|YP_001153091.1| type II secretion system protein [Pyrobaculum arsenaticum DSM 13514] gi|145282857|gb|ABP50439.1| type II secretion system protein [Pyrobaculum arsenaticum DSM 13514] Length = 261 Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 63/174 (36%), Gaps = 2/174 (1%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ-H 60 HL+ R + F ++ L +++ + AG+P+ AV + + + E Sbjct: 69 HLVSARRSHFENNLVYTLGVLLPLLAAGVPLGRAVTRLAEVEDDRYIARELALAAREMIV 128 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S E++S +P +++ ++L + L L K +KA+ Sbjct: 129 MGSSPEEALSHSAERVPSVTYRETVEMLTRSAKLTQRVDAVLLARLDWLLRAKQIKAQSL 188 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 SM +++ ++ + S + VL L + LI Sbjct: 189 VRSMSLMFEIFVVVTILLPTLVYIVALSLSPLGVLELGGLALDPLTLMLLMSLI 242 >gi|170718924|ref|YP_001784093.1| type II secretion system protein [Haemophilus somnus 2336] gi|168827053|gb|ACA32424.1| type II secretion system protein [Haemophilus somnus 2336] Length = 406 Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 21/165 (12%), Positives = 62/165 (37%), Gaps = 6/165 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 +F + L + +++ +P+ D++ +++ + + R +++ GLS S+S+++ Sbjct: 59 EFCDLLTQLAMLLQSSIPLKDSLQILLRNCVNISLNQWVRYILKNLEGGLSFSQSVAQSG 118 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 Y QE + ++ G+L+ ++ + ++ K+Q + + I Sbjct: 119 LYFSYQER-----QLISVGEMTGDLASVCQQIAEHRQQALALQRKIQKILLYPMIVLSIS 173 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 L + + ++ L + + L Sbjct: 174 VILTALLLIFIVPQFAEMYGSNQSELPFFTQLLLNISSFLQQYFF 218 >gi|183599887|ref|ZP_02961380.1| hypothetical protein PROSTU_03408 [Providencia stuartii ATCC 25827] gi|188022162|gb|EDU60202.1| hypothetical protein PROSTU_03408 [Providencia stuartii ATCC 25827] Length = 395 Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 14/160 (8%), Positives = 45/160 (28%), Gaps = 6/160 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + V +G+ + ++ ++ + + I G S+S+ + Sbjct: 61 FFYQLNSLVSSGINLLQSLYILQKNTHSPFWQKIITSTITDLKKGNRFSDSLRKHPNIFT 120 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++ GN ++ +L+ + K K+ +L Sbjct: 121 P-----TIISLISVAEKTGNYENNFKIIAGMLKHNEETKKKITKSLRYPIVLTLFSIALI 175 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 F + V ++ + + + ++ Sbjct: 176 FIMLVYVLPQFETIYQSFQHELPLITKIMIYLSNLITDYF 215 Score = 38.6 bits (88), Expect = 0.39, Method: Composition-based stats. Identities = 20/149 (13%), Positives = 46/149 (30%), Gaps = 13/149 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQ 59 +K LIK + + +++AGLP+++ + +P+ + E V Sbjct: 250 IKKLIK------NSNLNIFFLTLSSTLQAGLPLTECLKCTADTLHNPLYKKESLSVYHAV 303 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SLS ++ + ++ G L L L + + Sbjct: 304 LKGESLSAAVKNSA------FFPSIVHQLIAVAEESGQLPHFLQYLFTHFSTQHTSLTEK 357 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTS 148 ++E + + + + Sbjct: 358 SLKNLEPILLLLMAFLVGTIMVAMYLPIF 386 >gi|310640814|ref|YP_003945572.1| type ii secretion system f domain protein [Paenibacillus polymyxa SC2] gi|309245764|gb|ADO55331.1| Type II secretion system F domain protein [Paenibacillus polymyxa SC2] Length = 292 Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 61/148 (41%), Gaps = 5/148 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG----QSSDPVRSEFRRVI 56 + ++KR + L + P L ++ V AG V A+ V + P+ E + + Sbjct: 135 LHGKVQKRDQQILMELPELLSKMMLLVGAGETVQRALLHCVERKGADTVHPLYRELLQTV 194 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVS-FFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 G S ++ + + +QEV+ F +TV+ + G + AL LS+ L ++ Sbjct: 195 GEWESGYSFQQAFEHLSKRCGIQEVTIFTTTVLLNMRRGGSDFVMALRELSQTLWSKRTS 254 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTL 143 ++ + +K + L + + Sbjct: 255 ISRTRGEQASSKLVFPMALILLTVIVLV 282 >gi|260495328|ref|ZP_05815455.1| general secretion pathway protein F [Fusobacterium sp. 3_1_33] gi|260197106|gb|EEW94626.1| general secretion pathway protein F [Fusobacterium sp. 3_1_33] Length = 346 Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 65/170 (38%), Gaps = 13/170 (7%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGL 63 +K + K L + + +++GL + A+ +I+ + D E R + + G Sbjct: 1 MKNKKEKIL----FFTNELAIMLKSGLTFTTAIEIILKEEKDKNFKEVLRKIHKNLIAGK 56 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S+ ES + + ++ G+++E L ++S+ L + K+ + Sbjct: 57 SIFESFKNFDKIFGN-----TYLYMLKIGEVSGSITERLEDISKSLEFDLTNQKKLGGIL 111 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + +I V+ L+ F P ++ + + L+ F+ Sbjct: 112 VYPI---VVISLTLIIVTFLLTFILPNFITIFEENQVELPLITRILLFIS 158 >gi|254168618|ref|ZP_04875461.1| Bacterial type II secretion system protein F domain [Aciduliprofundum boonei T469] gi|289595685|ref|YP_003482381.1| Type II secretion system F domain protein [Aciduliprofundum boonei T469] gi|197622452|gb|EDY35024.1| Bacterial type II secretion system protein F domain [Aciduliprofundum boonei T469] gi|289533472|gb|ADD07819.1| Type II secretion system F domain protein [Aciduliprofundum boonei T469] Length = 332 Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 54/177 (30%), Gaps = 2/177 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLG 62 KKR P A++ I A + V+ + + + E + L Sbjct: 142 KAKKRAKDIDTHLPTAVNFIAALSSADVTVASIFKELSTRKEYGEIAKEAEWITRDTELL 201 Query: 63 L-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + +I R P + F + + GG L + S K + K Sbjct: 202 GKDILTAIEEASRRSPSVKWQEFLQGVITTATSGGRLKPFFMSKSEEYEKEKRLMLKKNM 261 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 S+ A ++ + F + +V +N +L + + + I V Sbjct: 262 ESLGLFAEIYVTVGVAFPLFLVVIIAIMALINKNSAASTVMLLEIIVVVMIPVLIFV 318 >gi|226949206|ref|YP_002804297.1| bacterial type II secretion system protein F [Clostridium botulinum A2 str. Kyoto] gi|226841646|gb|ACO84312.1| bacterial type II secretion system protein F [Clostridium botulinum A2 str. Kyoto] Length = 396 Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 61/182 (33%), Gaps = 8/182 (4%) Query: 2 KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 K++ K R+ K D + + + +G+ ++DA+ ++ ++ I Sbjct: 45 KNIFKIRSEKITLKDCSILCNKLYMLMASGINITDAINIVYEDFNNVHVKNSLYTIRNNI 104 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L + + F + + G + L++L ++ +++ Sbjct: 105 LRGDSIYNSFK----GFSNIYPKFLLSMIYIGEESGRIQYVLSDLKNFYENKYKFNKEIK 160 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA---FMLIGIM 177 + + + + +V + G N L L + A +++GI+ Sbjct: 161 NALIYPIIVLIAFIIMLYILIHMVVPSFIGIFNELGGSIPKKTLGMITAIKVFNVILGIL 220 Query: 178 VM 179 + Sbjct: 221 FI 222 Score = 37.4 bits (85), Expect = 0.88, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 48/130 (36%), Gaps = 5/130 (3%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 N + + +++G+P++ ++ ++ + + + E + +L ++ + S Sbjct: 265 NFSNSMNLMIKSGIPINKSLKLLEEVTDNYIFKENIK-----NLNKNIKDGKSISTSLNK 319 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L E+ ++ +IL+ K KV +E ++ + Sbjct: 320 CGFSNKILLSMVHIGEESGRLEESFYSVYKILKKDLEEKLKVSVKLIEPTIIIFMSLIIC 379 Query: 138 FCVSTLVYFT 147 + Sbjct: 380 IIFIYVFIPM 389 >gi|152981972|ref|YP_001355002.1| Flp pilus assembly protein TadC [Janthinobacterium sp. Marseille] gi|151282049|gb|ABR90459.1| Flp pilus assembly protein TadC [Janthinobacterium sp. Marseille] Length = 317 Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 59/136 (43%), Gaps = 3/136 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 M+ ++R + ++ P +D++ G+ + ++ V+ + S + E + + Sbjct: 152 MQIRARERRQQANEELPLLIDLLRLLQGVGMSIDQSLHVVENEFSTSLPVLGKELQIAAQ 211 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+ R +++S + +I + GG + + L S LR+++ + Sbjct: 212 QYQNGRTREQSLRRFSSLFENEDMSAVARLIVQVDRYGGAVQQPLQQFSDRLREQRKLDM 271 Query: 118 KVQALSMEAKASAWII 133 K + + K + ++ Sbjct: 272 KEKVGKLTVKMTGVMV 287 >gi|297201341|ref|ZP_06918738.1| integral membrane protein [Streptomyces sviceus ATCC 29083] gi|197712796|gb|EDY56830.1| integral membrane protein [Streptomyces sviceus ATCC 29083] Length = 312 Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 61/185 (32%), Gaps = 19/185 (10%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-------------------DPVRSEFRRVIETQ 59 ++ VRAG +A+ V V+ Sbjct: 123 LCALVAGEVRAGRQPGEALVRAVRDFEGPGRAGAGSGGSGLAAPEAGGFGETQASVLAAA 182 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + +++ R + + + V G L+ L L LR ++ +A + Sbjct: 183 RFGGDVPGALAAAARRPGAEGLLGLAACWRVAVDQGAGLAAGLDRLEGALRAERDQRADL 242 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +A A+++ W++ +LP L ++VL++ G L V +G+ Sbjct: 243 RAQLAGARSTVWMLAALPVLGLGLGAALGADPLHVLLHTGSGLGCLLVGGLLEGVGMWWA 302 Query: 180 RLMIN 184 ++ Sbjct: 303 TRIVR 307 >gi|18313580|ref|NP_560247.1| hypothetical protein PAE2779 [Pyrobaculum aerophilum str. IM2] gi|18161124|gb|AAL64429.1| hypothetical protein PAE2779 [Pyrobaculum aerophilum str. IM2] Length = 261 Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 59/155 (38%), Gaps = 2/155 (1%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ-H 60 HL+ R + F ++F L +++ + AG+P+ AV + + + E Sbjct: 69 HLVSARRSHFENNFVYTLGVLLPLLAAGVPLGRAVTRLAEVEEDKYIARELALAAREMIV 128 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S E+++ +P V+ +++ + L L K ++A+ Sbjct: 129 MGASQEEALAHSAERVPSVTYRETVEVLIRSAKITQRVDAVLLARLDWLLRNKQVRAQSL 188 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 S+ +++ ++ + + S + L Sbjct: 189 IRSLSLMFEIFVVAAMLLPLMVYIVALSFSPLGAL 223 >gi|113460602|ref|YP_718667.1| protein transport protein [Haemophilus somnus 129PT] gi|112822645|gb|ABI24734.1| protein transport protein [Haemophilus somnus 129PT] Length = 406 Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 21/165 (12%), Positives = 62/165 (37%), Gaps = 6/165 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 +F + L + +++ +P+ D++ +++ + + R +++ GLS S+S+++ Sbjct: 59 EFCDLLTQLAMLLQSSIPLKDSLQILLRNCVNISLNQWVRYILKNLEGGLSFSQSVAQSG 118 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 Y QE + ++ G+L+ ++ + ++ K+Q + + I Sbjct: 119 LYFSYQER-----QLISVGEMTGDLASVCQQIAEHRQQALALQRKIQKILLYPMIVLSIS 173 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 L + + ++ L + + L Sbjct: 174 IILTALLLIFIVPQFAEMYGSNQSELPFFTQLLLNISSFLQQYFF 218 >gi|320009993|gb|ADW04843.1| Type II secretion system F domain protein [Streptomyces flavogriseus ATCC 33331] Length = 289 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 59/163 (36%), Gaps = 1/163 (0%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 ++ +RAG A+ + + + + V+ G + ++ + L ++ Sbjct: 124 VIGELRAGREPGQALLIAARAADA-LGTSGPAVLAAARFGGDVPAALLQASAGPGLDGLA 182 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + V G L LA L LR + + +++A A ++ ++ LP Sbjct: 183 GMAACWRVAVNGGAGLGAGLARLEGALRGERRRREELRAQLAGAWSTVVVLALLPMLGLG 242 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 L + VL++ P G + L A G+ ++ Sbjct: 243 LGAALGADPLTVLLHTPGGLVCLVTGGALEAAGLFWASRIVRV 285 >gi|320100494|ref|YP_004176086.1| type II secretion system F domain-containing protein [Desulfurococcus mucosus DSM 2162] gi|319752846|gb|ADV64604.1| Type II secretion system F domain protein [Desulfurococcus mucosus DSM 2162] Length = 580 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 62/181 (34%), Gaps = 10/181 (5%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 ++ R K L +V + GLP ++ + + R++ +G Sbjct: 369 YIYSSREYKVTRGITRFLRDLVEVRKTGLPPERSIIELSPRDYGVFTPHLRKIAMELSIG 428 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L ++R + +++ ++GG E L NL+ + ++ + + Sbjct: 429 IPLRRITDEVMRKIRSWIGQVLLFILTDSIEVGGGTVEVLENLAWFAESVEAIEDERKRS 488 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL------INDPRGHMLLGVAAAFMLIGI 176 ++ G L + GYM L N G +L + ++GI Sbjct: 489 LRTLMIVPYMGGILSAVTVIYMV----GYMAKLPIQVGTFNQAAGVVLPSIVLNNYVMGI 544 Query: 177 M 177 + Sbjct: 545 V 545 Score = 38.9 bits (89), Expect = 0.35, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 66/180 (36%), Gaps = 6/180 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS---EFRRVIETQHL 61 R + +FP + V +GL A I+ S+ R+ R ++ + L Sbjct: 95 ASNRASSIDGEFPFLSSYLSTMVMSGLSPYIAFERILKGSTIFKRTSELAQRFILLNRIL 154 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + + P V + + GG++ + L SR+L + + K+ A Sbjct: 155 GRDPLTAFDELAKRTPSSRVKETLSGYIATVKAGGDVVDYLNKRSRLLFNEMLVGMKIIA 214 Query: 122 LSMEAKASAWIIGSLPFCV-STLVYFTSPGYMN--VLINDPRGHMLLGVAAAFMLIGIMV 178 + A++ L + T++YF + G+ G +L G+++ Sbjct: 215 DRLGGLLEAYLAMILLTMISFTVLYFVTTGFAGVVPFGLSSEGMFFFLYIVMPLLSGVII 274 >gi|240143493|ref|ZP_04742094.1| conserved hypothetical protein [Roseburia intestinalis L1-82] gi|257204527|gb|EEV02812.1| conserved hypothetical protein [Roseburia intestinalis L1-82] gi|291537188|emb|CBL10300.1| Bacterial type II secretion system protein F domain [Roseburia intestinalis M50/1] gi|291540422|emb|CBL13533.1| Bacterial type II secretion system protein F domain [Roseburia intestinalis XB6B4] Length = 423 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 19/151 (12%), Positives = 41/151 (27%), Gaps = 11/151 (7%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ----------SSDPVRSEFRRVIETQHL 61 + + + +V + AG+ VS A + V E +R Sbjct: 271 LELQYADMVSNLVLLLGAGMTVSKAWNRLTENYMNERQKRTICRKEVYEEMQRTSFEIKN 330 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + R F +++ + L+ L + + + A+ Sbjct: 331 GMGEERAYERFGERCGGYRYRKFGNLLAQNLRKGSRGLTRLLEQEAEDAFEERKSMARKL 390 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 K +I L + L + Sbjct: 391 GEEAGTKMLFPMILMLGAVMLILAFPAMRSM 421 >gi|260439392|ref|ZP_05793208.1| putative bacterial type II secretion system protein F domain protein [Butyrivibrio crossotus DSM 2876] gi|292808188|gb|EFF67393.1| putative bacterial type II secretion system protein F domain protein [Butyrivibrio crossotus DSM 2876] Length = 388 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 17/155 (10%), Positives = 45/155 (29%), Gaps = 7/155 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-----DPVRSEFRRVIETQ 59 +KR + D+P + + + AG+ +A I P + Sbjct: 236 KEKRDKLLIADYPELVSKLSLLMGAGMSTYNAFIKITEDYRKTGKTKPAYELLSECLNRI 295 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G++ +++ + + +++ G + L L + + Sbjct: 296 SSGITETDAYMEFGKRCNVMCYIKLGNLLAQNISKGTDNIFQL--LKEETEKAFEDRKAL 353 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 E + ++ L+ P +M+ Sbjct: 354 AKKLGEEAGTKLLLPMTMMLSVVLIIIVIPAFMSF 388 >gi|188532937|ref|YP_001906734.1| General secretion pathway protein F (Pectic enzymes secretion protein outF) [Erwinia tasmaniensis Et1/99] gi|188027979|emb|CAO95836.1| General secretion pathway protein F (Pectic enzymes secretion protein outF) [Erwinia tasmaniensis Et1/99] Length = 401 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 22/179 (12%), Positives = 49/179 (27%), Gaps = 20/179 (11%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + V A LP+ A+ + Q++ P I + L + + Sbjct: 67 MTRQLATLVGAALPLEQALLALEKQTTRPAGRTMLHAIRQKV----LEGASLADAVSLYP 122 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L L L+ + +K+K+ + + S+ Sbjct: 123 ATFPPLYQAMIAAGEASGKLDNVLEQLADYSEKTQQIKSKLTQAMIYPLLLTLVAISVIT 182 Query: 139 CVSTLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVMRL 181 + T V + + + G +L V +++R Sbjct: 183 ILLTAVVPSVVEQFVHMKQALPLSTRLLMAISEMTRAVGLPVLLVMLLAGFCARILLRR 241 >gi|154496359|ref|ZP_02035055.1| hypothetical protein BACCAP_00647 [Bacteroides capillosus ATCC 29799] gi|150274442|gb|EDN01519.1| hypothetical protein BACCAP_00647 [Bacteroides capillosus ATCC 29799] Length = 349 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 59/184 (32%), Gaps = 19/184 (10%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + + AG+ + V V+ + ++ + G LSE++ Sbjct: 13 DALSVFCYQLSLMMHAGIGSEEGVEVLAEDAADPRSKALLESLHAALLDGAPLSEALRAS 72 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + Q G L + L+ L+ R + ++ + A + Sbjct: 73 GAFPG------YMVRMVEIGQAAGRLDQVLSALAAYYRRESETASAIRRAVLYPAVMAVL 126 Query: 133 IGSLPFCVSTLVYFTS------------PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + ++ + T V P ++ G + GV + IG +V+ Sbjct: 127 VAAVFLVLMTRVLPVFQQVFQQLGLTLSPAAQALMTAGTAGQYVGGVLVVLLAIGAVVLL 186 Query: 181 LMIN 184 ++ Sbjct: 187 VLSR 190 >gi|332982951|ref|YP_004464392.1| Type II secretion system F domain-containing protein [Mahella australiensis 50-1 BON] gi|332700629|gb|AEE97570.1| Type II secretion system F domain protein [Mahella australiensis 50-1 BON] Length = 279 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 21/155 (13%), Positives = 56/155 (36%), Gaps = 1/155 (0%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + + +KF P +D +++ + +PV ++ I S V + + + Sbjct: 120 RSAVSTYKSKFESQLPAVIDSMIQGLAIEMPVEQVISYIADTKSGVVTPFLKELRDMLFT 179 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G SL +++ + + + ++S +S+ + L + + R + +A Sbjct: 180 GSSLESALTEVSAKTLSPDFERVARILSFRSETTAEMIHGLEQIRDNMETRLETQIMAKA 239 Query: 122 LSMEAKASAWIIGSLPFC-VSTLVYFTSPGYMNVL 155 +ME I+ + ++Y + Sbjct: 240 NNMENTMILPIMAGYVLPYLVIILYPMLSDLLKFF 274 >gi|319955828|ref|YP_004167091.1| type II secretion system f domain protein [Nitratifractor salsuginis DSM 16511] gi|319418232|gb|ADV45342.1| Type II secretion system F domain protein [Nitratifractor salsuginis DSM 16511] Length = 406 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 14/159 (8%), Positives = 46/159 (28%), Gaps = 2/159 (1%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + + + +G+ + A+ ++ +S + + + S+ + + Sbjct: 62 QLSDFSRELSSYLGSGMTILTALKLM--ESQHRDEKRYAAFLGEVRRKVDEGNSLYKALA 119 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + ++ F + G +SE L N+ + + ++ +V + Sbjct: 120 EQNVYQLPDFFLQSLRVAGESGKVSEVLTNMGQFFSLQSRIRKQVLNALAYPLFIFVVAI 179 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + + T V G + + Sbjct: 180 GMTGFLITFVVPKITGIFEDTGQQLPAITRFVLGLSDFF 218 Score = 36.3 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 14/136 (10%), Positives = 41/136 (30%), Gaps = 3/136 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + I+ + +G+ + AV + + + + + + + Sbjct: 266 NHELARFSYILSLMLDSGVSYAQAVQLAGTTFGNEALKAKFEKATQKVVEGNKLSNALHL 325 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 +P + + ++ + N+S++ + K K+ ME I Sbjct: 326 AGGVP---LKRNFLQSLALGEESSEVASVMRNVSKLYSEENEDKIKILLSLMEPLMMLLI 382 Query: 133 IGSLPFCVSTLVYFTS 148 G + V ++ Sbjct: 383 GGIVGVIVMAMLLPIF 398 >gi|118580834|ref|YP_902084.1| type II secretion system protein [Pelobacter propionicus DSM 2379] gi|118503544|gb|ABL00027.1| type II secretion system protein [Pelobacter propionicus DSM 2379] Length = 402 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 52/190 (27%), Gaps = 20/190 (10%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHL 61 I +R ++ V+AG+P+ A+ I+ + + R+V + Sbjct: 53 KRIGRRQLD-TRSLLTFNQEMLVLVKAGMPIMQALNTILQRQDGSRLTEVLRQVRDDVKG 111 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G SLS ++ R R P + G+L + L+ + ++ KV + Sbjct: 112 GASLSTALERHGRLFPH-----LYIASVRAGERTGDLINTTRRYIQYLKRVEAIRKKVVS 166 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTS-------------PGYMNVLINDPRGHMLLGVA 168 + + V T P M + L Sbjct: 167 AMFYPAIIVVVASLAVLLLLVYVVPTFSQIYADAGSQLPLPTQMLIAFTTFLKRFFLVGL 226 Query: 169 AAFMLIGIMV 178 Sbjct: 227 VLLFAAAAWF 236 >gi|325290043|ref|YP_004266224.1| Type II secretion system F domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324965444|gb|ADY56223.1| Type II secretion system F domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 387 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 21/142 (14%), Positives = 48/142 (33%), Gaps = 6/142 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73 ++A + + + IV Q + +R ++ V G +LS+++ Sbjct: 61 QLSLIARKFANLLQAEVSLLKVLDFIVKQEKNDLRKIQWQNVSLDVQSGHTLSQAVQE-- 118 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + F+ + + G L+EA ++ + + KV+ + Sbjct: 119 ---NIPAFGSFAQALIQAGEKSGTLAEAFGRMAGQFEEEYFYREKVKTALFYPVLLFLVS 175 Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155 ++ +STLV L Sbjct: 176 MAVLLMLSTLVLPMYESVFAAL 197 Score = 37.4 bits (85), Expect = 0.89, Method: Composition-based stats. Identities = 19/135 (14%), Positives = 45/135 (33%), Gaps = 5/135 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + I+ R + AG+ V++++ + + P + + L + L + Sbjct: 251 HQLIHFCGILGRLLEAGISVNESLEQLRKTVTGP-----KLLGFIDDLQVRLLQGQPLDS 305 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 ++ + I + G +E L N+S I + K + +E I Sbjct: 306 AFLANNYFPGETAEILAVGEQSGRFAETLLNISVIFKQELGTKMERMVKLIEPMMILGIS 365 Query: 134 GSLPFCVSTLVYFTS 148 + F ++ Sbjct: 366 FLVGFVALGVLLPVF 380 >gi|304440372|ref|ZP_07400261.1| possible type II secretion system protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371124|gb|EFM24741.1| possible type II secretion system protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 388 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 58/158 (36%), Gaps = 9/158 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + P I +R+G+ + A ++ S F V + +G SL E Sbjct: 56 EGEIPLLFKEISIMLRSGIDLYGAFVLLKNSSDGKKYDFFSNVEKRLKMGESLGEIFEE- 114 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + S F ++ NL E N++ L++ +N++ +V+ + + Sbjct: 115 -----SKIFSKFVISSIKIAEESENLEETFTNMAEYLQELENIRQEVKKSLIYPI---IL 166 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 I + V+ L+ F P ++ + + L+ Sbjct: 167 IFTTMLVVNFLIIFVVPTFVGLYASRDLELPLITKIVV 204 >gi|45357601|ref|NP_987158.1| type II secretion system protein [Methanococcus maripaludis S2] gi|45047161|emb|CAF29594.1| conserved hypothetical protein [Methanococcus maripaludis S2] Length = 298 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 80/197 (40%), Gaps = 17/197 (8%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLG 62 + + + KF + P AL ++V S+ +G V +A+ ++ V F +++ Sbjct: 77 MYESKMDKFDKNIPKALYVMVLSLDSGRSVVEAINEVIRSGIPEVDVVFSKIVTLMTERK 136 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS +++ + + + +I + GG L++ L L++ L D +N+K+++ ++ Sbjct: 137 LSFEDAMILVSNSLDSKIFRQVGRLIIENRKYGGELADTLKKLAKTLDDLQNLKSQLLSV 196 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR----------------GHMLLG 166 + A II + + ++ L G L G Sbjct: 197 TANGLAVGLIILCGVIPATAGLIGGYLTVISQLAPTMPSVEASQISKAIETIQMGSGLFG 256 Query: 167 VAAAFMLIGIMVMRLMI 183 + A L G+ V R++I Sbjct: 257 LFFAVPLFGLKVNRMII 273 >gi|254302343|ref|ZP_04969701.1| MTB family outer membrane protein secretion main terminal branch protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322535|gb|EDK87785.1| MTB family outer membrane protein secretion main terminal branch protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 346 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 65/170 (38%), Gaps = 13/170 (7%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGL 63 +K + K L + + +++GL + A+ +I+ + + +++ + G Sbjct: 1 MKNKKEKIL----FFTNELAIMLKSGLTFTTAIEIILKEEKDKNFKDVLKKIHKNLIAGK 56 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S+ ES + + ++ G+++E L ++S+ L + K+ + Sbjct: 57 SIFESFKNFDKIFGN-----TYLYMLKIGEVSGSIAERLEDISKSLEFDLANQKKLGGIL 111 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + +I V+ L+ F P ++ + + L+ F+ Sbjct: 112 VYPI---VVISLTLIIVTFLLTFILPNFITIFEENQVELPLITRILLFIS 158 >gi|50954221|ref|YP_061509.1| integral membrane protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950703|gb|AAT88404.1| integral membrane protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 256 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 30/88 (34%) Query: 97 NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 LS L LRDR +V+A +A++ ++ +LP + + + Sbjct: 42 ALSPVLRGAGASLRDRAETAREVEAALSGPRATSRLMTALPLVGLLMAAGLGIDVLGAIT 101 Query: 157 NDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 G LL G M ++ Sbjct: 102 GSLIGWGLLVAGVGLTFAGRAWMSRLVR 129 >gi|148379869|ref|YP_001254410.1| type II secretion system protein F [Clostridium botulinum A str. ATCC 3502] gi|153933284|ref|YP_001384166.1| type II secretion system protein F [Clostridium botulinum A str. ATCC 19397] gi|153934559|ref|YP_001387707.1| type II secretion system protein F [Clostridium botulinum A str. Hall] gi|148289353|emb|CAL83449.1| general secretion pathway protein [Clostridium botulinum A str. ATCC 3502] gi|152929328|gb|ABS34828.1| bacterial type II secretion system protein F [Clostridium botulinum A str. ATCC 19397] gi|152930473|gb|ABS35972.1| bacterial type II secretion system protein F [Clostridium botulinum A str. Hall] Length = 396 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 61/182 (33%), Gaps = 8/182 (4%) Query: 2 KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 K++ K R+ K D + + + +G+ ++DA+ ++ ++ I Sbjct: 45 KNIFKIRSEKITLKDCSILCNKLYMLMASGINITDAINIVYEDFNNVHVKNSLYTIRNNI 104 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L + + F + + G + L++L ++ +++ Sbjct: 105 LRGDSIYNSFK----GFSNIYPKFLLSMIYIGEESGRIQYVLSDLKNFYENKYKFNKEIK 160 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA---FMLIGIM 177 + + + + +V + G N L L + A +++GI+ Sbjct: 161 NALIYPIIVLIAFIIMLYILIHMVVPSFIGIFNELGGSIPKKTLGMITAIKVFNVILGIL 220 Query: 178 VM 179 + Sbjct: 221 FI 222 Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 49/130 (37%), Gaps = 5/130 (3%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 N + + +++G+P++ ++ ++ + + + E + +L ++ + S + Sbjct: 265 NFSNSMNLMIKSGIPINKSLKLLEEVTDNYIFKENIK-----NLNKNIKDGKSISISLNK 319 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L E+ ++ +IL+ K KV +E ++ + Sbjct: 320 CGFSNKILLSMVHIGEESGRLEESFYSVYKILKKDLEEKLKVSVKLIEPTIIIFMSLIIC 379 Query: 138 FCVSTLVYFT 147 + Sbjct: 380 IIFIYVFVPM 389 >gi|313835750|gb|EFS73464.1| type II secretion system F domain protein [Propionibacterium acnes HL037PA2] gi|314928423|gb|EFS92254.1| type II secretion system F domain protein [Propionibacterium acnes HL044PA1] gi|314970120|gb|EFT14218.1| type II secretion system F domain protein [Propionibacterium acnes HL037PA3] gi|328906759|gb|EGG26531.1| type II secretion system F domain protein [Propionibacterium sp. P08] Length = 147 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 7/149 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +K+R A P L ++ ++ AGLP+ AV + P + RR+ G+ Sbjct: 1 MKQRRAA---QLPETLLMLSSTMEAGLPLRAAVTTVAESLEGPCAEDLRRLASALAAGVP 57 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 S++ + + + +S G +SE L+ + L+ KA+ +A Sbjct: 58 DSKAWNDLAAVT---VWRDPAQDVSRAVDSGEGISELLSAHAAQLQVAAAEKAEKKARKA 114 Query: 125 EAKASAWIIGS-LPFCVSTLVYFTSPGYM 152 A + LP + V G + Sbjct: 115 GVDAIGPLGCCHLPAFLLVGVVPIIAGMV 143 >gi|253576052|ref|ZP_04853385.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251844627|gb|EES72642.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 285 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 12/155 (7%), Positives = 48/155 (30%), Gaps = 1/155 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + K+R + D P + ++ ++ G + + S ++ R+ Sbjct: 129 ITKAYKRRQEEITRDLPQLISKMMIALETGKSFLTTIQRLEETSGPRMKKMLARLNANIR 188 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + L++++ + + F+ + + G ++ + + + + A + Sbjct: 189 IMK-LTDAVDLFAAETDVPVMRDFAAAVKIGVNSGYGEAKKYFDSIKGDLRKLRLAALKE 247 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + + V + + Sbjct: 248 VTRSQPEKIKMLYILVALHAFAAVIIAFIDIFSQI 282 >gi|289423267|ref|ZP_06425078.1| bacterial type II secretion system protein F [Peptostreptococcus anaerobius 653-L] gi|289156367|gb|EFD05021.1| bacterial type II secretion system protein F [Peptostreptococcus anaerobius 653-L] Length = 349 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 17/151 (11%), Positives = 45/151 (29%), Gaps = 6/151 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 I R + + + +G + + +++ SS V +R + + G Sbjct: 1 MRILSRKKINSKELKVISSQLSSMLGSGCDIITCLEILITSSSRTVEEGVKRTLRSIKNG 60 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +L+ES + + F + ++ G + +S + +K+K+ Sbjct: 61 KTLAESFAL------STYFTNFFVNMVRAGEISGKIDYVFNRMSFYYERQTKLKSKIIGA 114 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153 + + + V Sbjct: 115 CLYPIILLVVSIFSFVFMLVYVVPNFEQAFE 145 >gi|94313634|ref|YP_586843.1| Type II secretory pathway, gspf-related transmembrane protein [Cupriavidus metallidurans CH34] gi|93357486|gb|ABF11574.1| Type II secretory pathway, gspf-related transmembrane protein [Cupriavidus metallidurans CH34] Length = 413 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 9/159 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+ V DA+ + + + ++ G SLS ++ P Sbjct: 80 FARELAALLDAGVGVIDALRTLGGNDRREASARVYGNLLRQLEEGHSLSAAMVNAANVFP 139 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 S+ G L+++L SR + ++A+V + ++ + + Sbjct: 140 D-----VLIACVKASEQTGGLADSLRRYSRNSATLQALRARVISAAIYPSVLLVVGMA-- 192 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 V L+ F P + +L + R L+ + Sbjct: 193 -VVLFLLAFVVPRFAALLEHSGRELPLMSRWLMMWGGAV 230 >gi|271962055|ref|YP_003336251.1| hypothetical protein Sros_0482 [Streptosporangium roseum DSM 43021] gi|270505230|gb|ACZ83508.1| hypothetical protein Sros_0482 [Streptosporangium roseum DSM 43021] Length = 193 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 61/154 (39%), Gaps = 4/154 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++ + + D P A D++V +RAG P++ A+ V V P+ V LG Sbjct: 41 RARRERDRVVADLPLAADLMVACLRAGQPITGAIDVTVEAVGGPLGERLAWVSGQLRLGA 100 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + + + P ++ + ++S + G +++ L LS R + A Sbjct: 101 APESAWQALAAEPP---LAPLARMMSRAALSGAPVADVLTRLSDDSRHALRAASAAAARR 157 Query: 124 MEAKASAWI-IGSLPFCVSTLVYFTSPGYMNVLI 156 + +A A + + LP V + G ++ Sbjct: 158 VGVQAVAPLGLCFLPAFVFLGIVPVVAGLAGEVL 191 >gi|256397305|ref|YP_003118869.1| type II secretion system protein [Catenulispora acidiphila DSM 44928] gi|256363531|gb|ACU77028.1| type II secretion system protein [Catenulispora acidiphila DSM 44928] Length = 304 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 64/158 (40%), Gaps = 4/158 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K ++ F LD++ ++ G + +A+ S R + Sbjct: 149 VKGQAAEKRRDFRRVLGAYLDLVAMNLAGGRGLPEALMAAAEVSDGWALRRIRDALTDAR 208 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + S ++S++ + + E+ +++ ++ G + E+LA + +R R+ + + Sbjct: 209 VTGISQWNALSQLGDALDVDELKDLGAALALVAEDGAKVRESLAARAETMRHRELSEIE- 267 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + AK+ + ++ + C +V+ P V+ + Sbjct: 268 --GAAGAKSQSMLVAQMLLCAGFMVFLLYPAMARVMGS 303 >gi|309703739|emb|CBJ03080.1| putative general secretion pathway protein F (protein transport protein HofF) [Escherichia coli ETEC H10407] Length = 331 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 25/179 (13%), Positives = 55/179 (30%), Gaps = 28/179 (15%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + A LP+ +++AVI QSS+ + +V G LS+++ Sbjct: 1 MATLSAAALPLEESLAVIGQQSSNKRLGDVLNQVRSAILEGHPLSDALQHFPTL-----F 55 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L+ L L+ +R+ +++K+ + + V Sbjct: 56 DSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQSLIYP---CMLTTVAIGVVI 112 Query: 142 TLVYFTSPGYMNVLINDP-------------------RGHMLLGVAAAFMLIGIMVMRL 181 L+ P ++ G LL + + ++ Sbjct: 113 ILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRTGPTLLATVFIVAVGFWLWLKR 171 >gi|147921248|ref|YP_684938.1| putative type II secretion system protein [uncultured methanogenic archaeon RC-I] gi|110620334|emb|CAJ35612.1| putative bacterial type II secretion system protein [uncultured methanogenic archaeon RC-I] Length = 652 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 53/145 (36%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L K+ K P L + +GL ++ A+ ++ + + SE R++ G Sbjct: 425 LRSKKVRKMDAAVPEFLKRLASFNESGLTLTMAIKALLNSNMGVLNSEIRKIWTDIEWGA 484 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 E++ R + + T+I+ S+ G++ E L + ++ + + Sbjct: 485 DAKEALIRFEYRVNTASIRRVVTLITKASESTGDIKETLFIAAADAAAIQSEREERFLNM 544 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTS 148 + + +I + + + Sbjct: 545 LLYLSIIYISFFVFLYILYTLSTVF 569 Score = 48.2 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 65/179 (36%), Gaps = 6/179 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQH-LGLS 64 R + P+A+ + G+ + D I + V EF+ V++ LG+ Sbjct: 134 RQSAIDQMLPHAVTFMHAMRSGGMSLLDIFRAINEHREIYGEVTLEFQAVVQGVELLGMD 193 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L S+ P + F + + GG+L + L + + + K + Sbjct: 194 LITSLRHAATITPSDHLKNFFESTATHMESGGDLEKFLRTRADQFQAIAVQEHKTLLELL 253 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 A ++ + + + S M ++ + G + L V A L +M + L+I Sbjct: 254 SMLAEVYVTAFVAGPLFLITILVS---MGMVSSGNTGQIDLLVYIAIPLGSVMFIWLLI 309 >gi|322806159|emb|CBZ03727.1| late competence protein ComGB, access of DNA to ComEA [Clostridium botulinum H04402 065] Length = 396 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 61/182 (33%), Gaps = 8/182 (4%) Query: 2 KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 K++ K R+ K D + + + +G+ ++DA+ ++ ++ I Sbjct: 45 KNIFKIRSEKITLKDCSILCNKLYMLMASGINITDAINIVYEDFNNVHVKNSLYTIRNNI 104 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L + + F + + G + L++L ++ +++ Sbjct: 105 LRGDSIYNSFK----GFSNIYPKFLLSMIYIGEESGRIQYVLSDLKNFYENKYKFNKEIK 160 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA---FMLIGIM 177 + + + + +V + G N L L + A +++GI+ Sbjct: 161 NALIYPIIVLIAFIIMLYILIHMVVPSFIGIFNELGGSIPKKTLGMITAIKVFNVILGIL 220 Query: 178 VM 179 + Sbjct: 221 FI 222 Score = 36.3 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 49/130 (37%), Gaps = 5/130 (3%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 N + + +++G+P++ ++ ++ + + + E + +L ++ + S + Sbjct: 265 NFSNSMNLMIKSGIPINKSLKLLEEVTDNYIFKENIK-----NLNKNIKDGKSISISLNK 319 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L E+ ++ +IL+ K KV +E ++ + Sbjct: 320 CGFSNKILLSMVHIGEESGRLEESFYSVYKILKKDLEEKLKVGVKLIEPTIIIFMSLIIC 379 Query: 138 FCVSTLVYFT 147 + Sbjct: 380 IIFIYVFIPM 389 >gi|168180496|ref|ZP_02615160.1| bacterial type II secretion system protein F [Clostridium botulinum NCTC 2916] gi|182668647|gb|EDT80625.1| bacterial type II secretion system protein F [Clostridium botulinum NCTC 2916] Length = 396 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 61/182 (33%), Gaps = 8/182 (4%) Query: 2 KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 K++ K R+ K D + + + +G+ ++DA+ ++ ++ I Sbjct: 45 KNIFKIRSEKITLKDCSILCNKLYMLMASGINITDAINIVYEDFNNVHVKNSLYTIRNNI 104 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L + + F + + G + L++L ++ +++ Sbjct: 105 LRGDSIYNSFK----GFSNIYPKFLLSMIYIGEESGRIQYVLSDLKNFYENKYKFNKEIK 160 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA---FMLIGIM 177 + + + + +V + G N L L + A +++GI+ Sbjct: 161 NALIYPIIVLIAFIIMLYILIHMVVPSFIGIFNELGGSIPKKTLGMITAIKVFNVILGIL 220 Query: 178 VM 179 + Sbjct: 221 FI 222 Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 49/130 (37%), Gaps = 5/130 (3%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 N + + +++G+P++ ++ ++ + + + E + +L ++ + S + Sbjct: 265 NFSNSMNLMIKSGIPINKSLKLLEEVTDNYIFKENIK-----NLNKNIKDGKSISISLNK 319 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L E+ ++ +IL+ K KV +E ++ + Sbjct: 320 CGFSNKILLSMVHIGEESGRLEESFYSVYKILKKDLEEKLKVSVKLIEPTIIIFMSLIIC 379 Query: 138 FCVSTLVYFT 147 + Sbjct: 380 IIFIYVFIPM 389 >gi|150399783|ref|YP_001323550.1| type II secretion system protein [Methanococcus vannielii SB] gi|150012486|gb|ABR54938.1| type II secretion system protein [Methanococcus vannielii SB] Length = 298 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 68/158 (43%), Gaps = 1/158 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV-IETQHLG 62 + + + KF + P AL ++V S+ +G + +A+ ++ V S F ++ + Sbjct: 77 MYESKMEKFDSNLPKALYVMVLSLDSGRSIVEAINEVIRSGIPEVDSVFSKIVLLMTEKK 136 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS +S+ + + + S +I + GG L+ L L++ L D +N+K+++ ++ Sbjct: 137 LSFEDSMMLVSNSLDSKLFRQISRLIIENRKYGGELANTLKKLAKTLEDLQNLKSQLISV 196 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 + A +I + + ++ L Sbjct: 197 TGNGLAVGLVILCGVIPATAGLIGGYLTVISQLAPTMP 234 >gi|152991304|ref|YP_001357026.1| general secretory pathway protein F [Nitratiruptor sp. SB155-2] gi|151423165|dbj|BAF70669.1| general secretory pathway protein F [Nitratiruptor sp. SB155-2] Length = 412 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 64/155 (41%), Gaps = 9/155 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 LD + + AGLP++ ++ V + +++ F +++E G+SL S+ R R + Sbjct: 77 LLDQLAIMLDAGLPLNFSLEETVKNEKDPMLKAIFTQILEDIESGMSLYASVERFKRQLG 136 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 S + + G L+E +A+LS+I ++ + + K + + +II ++ Sbjct: 137 -----TLSLSLFRLGEETGTLAEQIAHLSQIYQEILDNRRKFRKATRYPI---FIIVAMS 188 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 + + P + L ++ Sbjct: 189 IAFAIVTILVIPQFEEFFKESGMQLPLPTRFLLWL 223 >gi|41615061|ref|NP_963559.1| hypothetical protein NEQ268 [Nanoarchaeum equitans Kin4-M] gi|40068785|gb|AAR39120.1| NEQ268 [Nanoarchaeum equitans Kin4-M] Length = 293 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 65/187 (34%), Gaps = 5/187 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH-L 61 I +R A + P A + G P + +R E + ++E L Sbjct: 107 RIPQRKASIEKNLPYATLYMATIANTGAPPIAIFRFLSRMPDFGEIRQEAKDIVEMVDVL 166 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L ++ + +Y P ++ + + + GG+LSE L +S + K + Sbjct: 167 GQDLLRALDKKAKYSPSKQWAELLIGLKTILESGGDLSEYLYRMSDLYSRELRRKVQQFG 226 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI---MV 178 + ++ + ++ G M I + +L + ++ I + Sbjct: 227 DLLMMVVEMYLTLVIVGGFFMIILSLIMGGMGGDIEAIKVMHILLLGLVIPIVSIGLAFM 286 Query: 179 MRLMINF 185 ++ M+ Sbjct: 287 IKSMLPI 293 >gi|332534353|ref|ZP_08410194.1| type II secretion system protein [Pseudoalteromonas haloplanktis ANT/505] gi|332036172|gb|EGI72646.1| type II secretion system protein [Pseudoalteromonas haloplanktis ANT/505] Length = 271 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 56/156 (35%), Gaps = 4/156 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQH 60 +R + L +++ +RAG + + A+ V P+ E + + Sbjct: 109 RKNQRKTVINNSLEFFLRVLLVYMRAGFSLERSFALAVDHGLSQKHPLYKELKLFLFELS 168 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALA-NLSRILRDRKNMKAKV 119 G + + + + + + ++ + S+LG L +A+ L + + + AK Sbjct: 169 AGKDREFAFNSLFERTGVLGIKKLTNLMLIGSKLGTPLIQAVEAQLEGLALKKNILLAKK 228 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 I+ P + + + + MNVL Sbjct: 229 VNKKAMHTTFPIILICFPMFLVLVFFPAALQVMNVL 264 >gi|307131441|ref|YP_003883457.1| general secretion pathway protein F [Dickeya dadantii 3937] gi|306528970|gb|ADM98900.1| General secretion pathway protein F [Dickeya dadantii 3937] Length = 406 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 22/184 (11%), Positives = 58/184 (31%), Gaps = 7/184 (3%) Query: 7 KRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +R + D + + AG+P+ +A+ + GQ+ + Q + Sbjct: 60 RRYERLSTLDLALLTRQLASLLDAGIPLEEALTALAGQADKQAVGVVLNAVRQQL----I 115 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + M + + + G L+ L L+ L ++ K + + Sbjct: 116 AGVSFAMALQTLPHSFNRLYCAMVAAGEATGCLALVLIRLADYLDQQQKTKNTLIQALLY 175 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMI 183 A + + + + V + + LL ++ G +++ +++ Sbjct: 176 PALLAVMSIIVVSVLLSSVVPQVVTQLQQMHVALPLTTRALLTMSDLLNQYGWILLIVLV 235 Query: 184 NFDV 187 V Sbjct: 236 ALAV 239 >gi|288918386|ref|ZP_06412739.1| type II secretion system protein [Frankia sp. EUN1f] gi|288350281|gb|EFC84505.1| type II secretion system protein [Frankia sp. EUN1f] Length = 492 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 21/219 (9%), Positives = 53/219 (24%), Gaps = 36/219 (16%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + ++ + A+ + L + + AG DA+ + + + Sbjct: 42 RWVVHRYEAELRGAAEDVLAAVATELDAGASPDDALRTALASVTGLPAHPHSGEAHSGDG 101 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEA---------------LANLS 106 R + + + L L+ Sbjct: 102 RRGGGRQSRRSDSRRGGGRSGRAAGSLDLPRLRELLADADADDAPRLLSRCDAGALRQLA 161 Query: 107 RILRDRKNMKAKVQA---------------------LSMEAKASAWIIGSLPFCVSTLVY 145 R + ++ ++S ++ LP + Sbjct: 162 TAFRVCRLTGVRLAPVAVMLADAARSDAARADELAAALAGPRSSGRLVAGLPLLGVAMGI 221 Query: 146 FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 ++VL P G + L + L G+ +R + + Sbjct: 222 LLGAAPVDVLTTSPVGTLCLAAGVSLDLAGLRWLRRISD 260 >gi|221133817|ref|ZP_03560122.1| type IV pilus biogenesis protein PilC [Glaciecola sp. HTCC2999] Length = 399 Score = 48.6 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 49/157 (31%), Gaps = 9/157 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D I + AG+ + +I GQ+ V+ + + G +++S+ + Sbjct: 61 DIAIITRQIATMLCAGVNILKTFEMIAAGQTKPSVKKMLSEIADDVRAGNPIAQSLRKYP 120 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G L LS + +K+K++ A ++ Sbjct: 121 SQ-----FDTLYCDLVDTGEQSGRLDTIFEQLSIYKEKAEALKSKIKKAMFYPLA---VV 172 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 TL+ F P + + + +L Sbjct: 173 IVALMVTVTLLVFVVPQFQMIFNSFGAELPVLTQMIL 209 Score = 34.3 bits (77), Expect = 8.7, Method: Composition-based stats. Identities = 10/136 (7%), Positives = 37/136 (27%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + ++ AG+P+ A+ + R + + G+ + ++ Sbjct: 264 AAIARFTRTLATTMTAGVPLITALDSAANASGNAVYRDAIGSMRKEVSSGIPMFVAMGA- 322 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G + + L ++ I + + +E + Sbjct: 323 -----TNVFPDMVVQMIAIGEESGAIDDMLLKVTTIYEAQVDDMIDGLTSLLEPLIMTVL 377 Query: 133 IGSLPFCVSTLVYFTS 148 + ++ + Sbjct: 378 GLVIGGLITAMYLPIF 393 >gi|289747493|ref|ZP_06506871.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289688021|gb|EFD55509.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] Length = 165 Score = 48.2 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 39/105 (37%) Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + S G ++ + R + +R+ A+V A A+ASA I+ LP Sbjct: 57 YWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILPLL 116 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L ++ L+ G LL V G++ + + Sbjct: 117 GVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITD 161 >gi|332982942|ref|YP_004464383.1| Type II secretion system F domain-containing protein [Mahella australiensis 50-1 BON] gi|332700620|gb|AEE97561.1| Type II secretion system F domain protein [Mahella australiensis 50-1 BON] Length = 250 Score = 48.2 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 18/150 (12%), Positives = 55/150 (36%), Gaps = 1/150 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R K ++ P ++++V+ + +PV + + I +R + I+ +LG+ L Sbjct: 97 KQRLMK-DNELPTVVNLLVQGLSVEMPVENILQYIADNKHGAMRDIIKGAIDNINLGIPL 155 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +S+ + + +++ + L+ L ++ + + + ++ Sbjct: 156 EQSLQEAAEKSMNKYFQRVTRILTKSKESSKGLAAQLQDVLSDMEEERLNTKLSHVNMLD 215 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + ++ M L Sbjct: 216 NALFFVVFLGYFLPLIVMILMPMITSMGFL 245 >gi|76803231|ref|YP_331326.1| transmembrane protein (type II secretion system proteins TadC) [Natronomonas pharaonis DSM 2160] gi|76559096|emb|CAI50694.1| transmembrane protein (homolog 5 to type II secretion system proteins TadC) [Natronomonas pharaonis DSM 2160] Length = 568 Score = 48.2 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 23/178 (12%), Positives = 57/178 (32%), Gaps = 7/178 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI-ETQHLG 62 + RT F + P+AL ++ R V G+ V AVA + F + L Sbjct: 338 AARDRTDAFDESLPDALYLVGRRVSDGVSVERAVADAAEELDGVAGEVFTDAARRQRRLR 397 Query: 63 LSLSESI---SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + + + + + + + + V + G AL + L + + ++ + Sbjct: 398 VDIETAFRGSHGALEELTSRRAESAARLFGVAANAGAPAGRALIETADHLDELRRVETEA 457 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM---NVLINDPRGHMLLGVAAAFMLI 174 + + + + + + L +G+A + ++ Sbjct: 458 RRDLGQVTTTLSNTAAFFGPLVGGATVALADSVGTAEALDGSVPETAGIGLAVGWYVL 515 >gi|311280916|ref|YP_003943147.1| Type II secretion system F domain-containing protein [Enterobacter cloacae SCF1] gi|308750111|gb|ADO49863.1| Type II secretion system F domain protein [Enterobacter cloacae SCF1] Length = 384 Score = 48.2 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 19/158 (12%), Positives = 52/158 (32%), Gaps = 6/158 (3%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + + + ++AGL +S+ + ++ Q ++ + + G LSE++S Sbjct: 43 SDLMQQLATLLQAGLTLSEGLTLLSEQHPSAQWQALLQDMAVRLAQGSPLSEAMSEWPEV 102 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + ++ G L +L+R + ++ + KV + + Sbjct: 103 FPPLYPAT-----IRAGEMTGRLEHCCFHLARQQQAQQRLAQKVAKALRYPLVVILLAVA 157 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + + V + +A + + Sbjct: 158 VIIGMCGFVLPEFAQIYRTFNTPLPTLTRMVMALSVWV 195 >gi|20091915|ref|NP_617990.1| hypothetical protein MA3097 [Methanosarcina acetivorans C2A] gi|19917113|gb|AAM06470.1| conserved hypothetical protein [Methanosarcina acetivorans C2A] Length = 383 Score = 48.2 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 63/185 (34%), Gaps = 3/185 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + + + + P AL + G D + + + + E +V+ Sbjct: 190 LYNKVSNKNMNIQHEIPFALSYMSVLASGGSSPLDVIRRVAAEDYGEISRELSKVMYRID 249 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + ++S +++ + + IS Q GG L L S+ L + + K Sbjct: 250 ALGEDGNTAMSYLIQNTSSEHLRAVCIDISNAMQAGGGLQAYLELKSKELMEMRRQAQKA 309 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN--DPRGHMLLGVAAAFMLIGIM 177 S+ ++ G + V ++ + + + PR V A I +M Sbjct: 310 FVDSLSIYGEGYLSGIVMSVVLVVLMIVICSALGIDLKIMTPRQLFNFFVYFALPFINLM 369 Query: 178 VMRLM 182 + ++ Sbjct: 370 FILML 374 >gi|330502647|ref|YP_004379516.1| general secretion pathway protein F [Pseudomonas mendocina NK-01] gi|328916933|gb|AEB57764.1| general secretion pathway protein F [Pseudomonas mendocina NK-01] Length = 405 Score = 48.2 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 51/161 (31%), Gaps = 9/161 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + ++A LP+ +A+ +S ++ V G SL+ S+ Sbjct: 66 RDLALVTRQLATLIQAALPIEEALRAAAAQSTSSRIQGMLLAVRARVLEGHSLAGSLKEF 125 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P + G+L L L+ + + KVQ + + Sbjct: 126 PAAFP-----ELYRATVAAGEHAGHLGLVLEQLADYTEQHQQSRQKVQLALLYPV---IL 177 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + + V L+ + P + V ++ + L + Sbjct: 178 MCASLLIVGFLLGYVVPDVVKVFVDSGQTLPALTRGLIALS 218 Score = 37.8 bits (86), Expect = 0.67, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 46/130 (35%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + R+G+P+ +A+A+ + V E + G SL+ S+ ++ P Sbjct: 274 FASTLAILTRSGVPLVEALAIAGEVIGNRVIRGEVVVAAQKVREGGSLTRSLEASGQFPP 333 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L + LA ++ + + + + E ++ + Sbjct: 334 M------MLHMIASGERSGELDQMLARTAKNQENDLSAQIALLVGLFEPFMLVFMGAVVL 387 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 388 VIVLAILLPI 397 >gi|284031223|ref|YP_003381154.1| type II secretion system protein [Kribbella flavida DSM 17836] gi|283810516|gb|ADB32355.1| type II secretion system protein [Kribbella flavida DSM 17836] Length = 306 Score = 48.2 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 17/154 (11%), Positives = 57/154 (37%), Gaps = 1/154 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ ++R F + LD++ ++ G + +A+ + R+ + Sbjct: 152 LRQEAEERRRDFRHVVGSFLDLVAMNLAGGRGLPEALMTASTIGDHWAMARIRQALANAR 211 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 L + ++++R+ + ++E+ ++ +++ G + +L + LR ++ + Sbjct: 212 LIGITPWDAMARLGDDLGVEELRDLASALALAGDEGAKIRASLLARAASLRRKELADVEG 271 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153 +A + + L Y + Sbjct: 272 KAGERSQSMLVAQLVMCAAFMLFLGYPAGAAILG 305 >gi|332976168|gb|EGK13036.1| putative general secretion pathway protein F [Desmospora sp. 8437] Length = 350 Score = 48.2 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 25/193 (12%), Positives = 55/193 (28%), Gaps = 23/193 (11%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 K R D + + AG P+ ++ ++ Q E R++ + G S Sbjct: 5 KKGRRKWNADRLTLFSQHLANLLEAGFPLVPSIRLLSEQG-VIGTREAERILGSLDQGKS 63 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 LS ++ + + T + ++ G+ L R+R + ++ Sbjct: 64 LSAALEA-------EGMPALFTSLIRAAEEHGDYGFGLKQCEVYYRERGRLIRELTRALT 116 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR---------------GHMLLGVAA 169 ++G + T V + G L A Sbjct: 117 YPMVVLMLVGLAFLFLMTTVVPRFSEMYETMGLTLPLYTRIFLRIHQSLQAGLFGLTAAL 176 Query: 170 AFMLIGIMVMRLM 182 + + +R + Sbjct: 177 LLFGLICLYIRRL 189 >gi|226303994|ref|YP_002763952.1| hypothetical protein RER_05050 [Rhodococcus erythropolis PR4] gi|226183109|dbj|BAH31213.1| conserved hypothetical membrane protein [Rhodococcus erythropolis PR4] Length = 262 Score = 48.2 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 67/164 (40%), Gaps = 1/164 (0%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 L++++ + G + A +V + S V + FR LG S + + + + Sbjct: 95 LEVLIAELSVGAHPAVASSVAGEECSGEVSAVFRSAGARARLGGS-AAAAFAVPDSCIER 153 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 E S +V V Q G L+E L + + R+ + + +A A+A+A ++ LP Sbjct: 154 EFSRIGSVWRVADQHGLALAELLGAVRTDMLGRRRFRQRTEAGLAGARATAAVLAFLPLL 213 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 L + VL G +LL + A + G++ + Sbjct: 214 GIGLGQLMGASPLRVLFGGGLGGVLLVIGTACVSAGLLWTDRIT 257 >gi|145631454|ref|ZP_01787224.1| putative type IV pilin secretion protein [Haemophilus influenzae R3021] gi|144982991|gb|EDJ90500.1| putative type IV pilin secretion protein [Haemophilus influenzae R3021] Length = 405 Score = 48.2 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 20/162 (12%), Positives = 64/162 (39%), Gaps = 6/162 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71 + L+ + +++ +P+ +++ ++ + V +E+ R++++ GL+ S++I + Sbjct: 56 NSEISELLNQLATLLQSAIPLKNSLQILQQNCTQIVLNEWLERLLQSIESGLAFSQAIEQ 115 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 +Y+ QE + ++ G LS ++ ++ K+Q + + Sbjct: 116 QGKYLTQQE-----IQLIQVGEMTGKLSVVCKRIATHRSQSLALQRKLQKIMLYPSMVLG 170 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 I L + + + + + ++ + L Sbjct: 171 ISLLLTLALLLFIVPQFAEMYSGNNAELPTITAILLSISNFL 212 Score = 37.4 bits (85), Expect = 0.92, Method: Composition-based stats. Identities = 13/136 (9%), Positives = 43/136 (31%), Gaps = 3/136 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESIS--RM 72 N + ++AG+P++ A+ + ++ ++ + + L Sbjct: 263 LVNFSQSLQIMLQAGVPLNQALDSFLPRTQTWQTKTLVNDIVLDKEVRSILQWVSQGYAF 322 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + I + G L+ L ++ +++ N + + + +E I Sbjct: 323 SDSVSSDLFPMEAQQILQIGEQSGKLALMLEHIVDNYQEKLNHQIDLLSQMLEPLMMVII 382 Query: 133 IGSLPFCVSTLVYFTS 148 + + + Sbjct: 383 GSLIGIIMMGMYLPIF 398 >gi|290558836|gb|EFD92228.1| hypothetical protein BJBARM5_1029 [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 233 Score = 48.2 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 51/113 (45%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K KRT + A+ I+ V +G+P+ +A+ + + + EF+ +E Sbjct: 112 KLQAVKRTKLIEEQVVFAIREIMIKVGSGVPIFNALLDVANGNYGIISDEFKLAVEEIES 171 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 G+ ++++ + R +P Q + +I + G +++ L + +L ++ Sbjct: 172 GVPQNDALDHLARRVPSQSLRRAIDIILYAIKSGSDIAGTLELIHDMLIKKQQ 224 >gi|167766163|ref|ZP_02438216.1| hypothetical protein CLOSS21_00657 [Clostridium sp. SS2/1] gi|167712243|gb|EDS22822.1| hypothetical protein CLOSS21_00657 [Clostridium sp. SS2/1] gi|291560102|emb|CBL38902.1| Type II secretory pathway, component PulF [butyrate-producing bacterium SSC/2] Length = 346 Score = 48.2 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 13/156 (8%), Positives = 45/156 (28%), Gaps = 5/156 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 + ++ + +++G+ ++ I ++E + +++ L Sbjct: 2 KKKLSNEELITFCGQMALILKSGIS---SLEGIYIMEDGDAQTEGKEILKEIREE--LEM 56 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ ++ + G L E + L+ + + V++ Sbjct: 57 CGMLYPAMEKTGVFPEYALHMTEIGEQTGRLDETMEALAAYYQREEETLDAVKSAVTYPI 116 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 A ++ + + V L + G Sbjct: 117 AMLGMLLVIVAVLFIKVMPVFEQVYMQLGQEMTGVA 152 >gi|327463769|gb|EGF10085.1| bacterial type II secretion system protein F [Streptococcus sanguinis SK1057] Length = 408 Score = 48.2 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 18/171 (10%), Positives = 50/171 (29%), Gaps = 4/171 (2%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 L D + + +G+P+++AV ++ Q++ +++ S Sbjct: 57 KKIKLKDISLFCKQMSVMLESGIPLNNAVDILEQQATSKNLKSSLKIVSKSLKEGS---- 112 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + G L E L +S +++ + Sbjct: 113 QLSKAMIDQEGMFPDLLIRMVQAGEKTGKLDEVLEKMSEHYNKELKTSRQIRGAMIYPAV 172 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A++ + + +V + G + +AA+ + + Sbjct: 173 LAFLAVAAVLALLYVVIPSFSGIFEQSGMAMPLPTRIVLAASNFVRSYWYI 223 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ +A+ +++ V E ++ L + Sbjct: 270 FASTLAILTSAGIPLVEAIESAAATTNNAVVIEKMKIANE-----GLQKGERLTGMITAT 324 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G+L L S + K +E + + Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLVKTSDYYEEELETAIKQLLSLLEPAMIIVMGVIIGG 384 Query: 139 CVSTLVYFTS 148 V++++ Sbjct: 385 IVASVMLPMF 394 >gi|324996179|gb|EGC28089.1| bacterial type II secretion system protein F [Streptococcus sanguinis SK678] Length = 408 Score = 48.2 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 18/171 (10%), Positives = 50/171 (29%), Gaps = 4/171 (2%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 L D + + +G+P+++AV ++ Q++ +++ S Sbjct: 57 KKIKLKDISLFCKQMSVMLESGIPLNNAVDILEQQATSKNLKSSLKIVSKSLKEGS---- 112 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + G L E L +S +++ + Sbjct: 113 QLSKAMIDQEGMFPDLLIRMVQAGEKTGKLDEVLEKMSEHYNKELKTSRQIRGAMIYPAV 172 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A++ + + +V + G + +AA+ + + Sbjct: 173 LAFLAVAAVLALLYVVIPSFSGIFEQSGMAMPLPTRIVLAASNFVRSYWYI 223 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ +A+ +++ V E ++ L + Sbjct: 270 FASTLAILTSAGIPLVEAIESAAATTNNAVVIEKMKIANE-----GLQKGERLTGMITAT 324 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G+L L S + K +E + + Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLVKTSDYYEEELETAIKQLLSLLEPAMIIVMGVIIGG 384 Query: 139 CVSTLVYFTS 148 V++++ Sbjct: 385 IVASVMLPMF 394 >gi|313682350|ref|YP_004060088.1| type ii secretion system f domain [Sulfuricurvum kujiense DSM 16994] gi|313155210|gb|ADR33888.1| Type II secretion system F domain [Sulfuricurvum kujiense DSM 16994] Length = 405 Score = 48.2 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 59/167 (35%), Gaps = 5/167 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + + AG+P+ ++ ++ QS R E R +T + Sbjct: 56 RRDTLSSGALSQLSRDLAVYLNAGVPLVRSLTLLRHQSRSDSRME--RFYDTLIEHIHEG 113 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S ++ + + F S+ G L++ L LS L ++ +K ++ + Sbjct: 114 KSFAQALDMQEFYTLPVFYVGTLKISEDRGILAQVLNELSHYLNIQEKIKKQLSQAMVYP 173 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 +II +S ++ P +V + + +L Sbjct: 174 S---FIIIVAVLMISFMLTVVVPKITSVFESTGQPLPMLTQWVISSA 217 >gi|145632541|ref|ZP_01788275.1| putative type IV pilin secretion protein [Haemophilus influenzae 3655] gi|229844999|ref|ZP_04465136.1| putative type IV pilin secretion protein [Haemophilus influenzae 6P18H1] gi|144986736|gb|EDJ93288.1| putative type IV pilin secretion protein [Haemophilus influenzae 3655] gi|229812133|gb|EEP47825.1| putative type IV pilin secretion protein [Haemophilus influenzae 6P18H1] Length = 406 Score = 48.2 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 18/162 (11%), Positives = 64/162 (39%), Gaps = 6/162 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71 + L+ + +++ +P+ +++ ++ + + +E+ R++++ GL+ S++I + Sbjct: 56 NSEISELLNQLATLLQSAIPLKNSLQILQQNCTHIMLNEWLERLLQSIEAGLAFSQAIEQ 115 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 +Y+ QE + ++ G L+ ++ ++ K+Q + + Sbjct: 116 QGKYLTQQE-----IQLIQVGEMTGKLAVVCKKIATHRSQSLALQRKLQKIMLYPSMVLG 170 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 I L + + + + + ++ + L Sbjct: 171 ISLLLTLALLLFIVPQFAEMYSGNNAELPTITAILLSISNFL 212 Score = 38.6 bits (88), Expect = 0.46, Method: Composition-based stats. Identities = 12/137 (8%), Positives = 44/137 (32%), Gaps = 4/137 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS--EFRRVIETQHLGLSLSESIS--R 71 N + ++AG+P++ A+ + ++ ++ + + L Sbjct: 263 LVNFSQSLQIMLQAGVPLNQALDSFLPRTQTWQTKKTLVNDMVLDKEVRSILQWVSQGYA 322 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + + G L+ L +++ +++ N + + + +E Sbjct: 323 FSNSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIAENYQEKLNHQINLLSQMLEPLIMVI 382 Query: 132 IIGSLPFCVSTLVYFTS 148 I + + + Sbjct: 383 IGSLIGIIMMGMYLPIF 399 >gi|260596530|ref|YP_003209101.1| type IV pilin biogenesis protein [Cronobacter turicensis z3032] gi|260215707|emb|CBA28060.1| Protein transport protein hofC [Cronobacter turicensis z3032] Length = 406 Score = 48.2 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 19/163 (11%), Positives = 53/163 (32%), Gaps = 6/163 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 A+ + ++AG+ ++ +A++ Q +++R + L + S +R P Sbjct: 69 AVRQLAALLQAGVSLTQGLAMLSSQHP---VAQWRALFAQLAKQLGRGVAFSETLRQWP- 124 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + +L G L L++ D++ ++ +V + L Sbjct: 125 DIFPPLYISLMRTGELTGKLDMCCQQLAQQQEDQQKLRKQVIKALRYPAFIFTVALLLTL 184 Query: 139 CVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVM 179 ++ V ++ ++ M + + Sbjct: 185 GMTCFVLPQFTAIYRSFNTPLPLVTRAVIALSEGLMQYAVWWL 227 Score = 37.4 bits (85), Expect = 1.00, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 45/127 (35%), Gaps = 7/127 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + AG+P+ +++ + +S R RRV E GL L ++ + Sbjct: 276 LSLMQGAGIPLLQSLSSVEETLASPLWRQAVRRVKEGIASGLPLWRALEQ------ETVF 329 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + + G+L L L+ + + +A+ A ++E I + V Sbjct: 330 TALCIQLVRTGEETGSLDLMLEKLAGWHLAQTSERAQTLAATLEPLMMMVIGLIVGTLVV 389 Query: 142 TLVYFTS 148 + Sbjct: 390 AMYLPIF 396 >gi|77919283|ref|YP_357098.1| type II secretory pathway, component PulF [Pelobacter carbinolicus DSM 2380] gi|77545366|gb|ABA88928.1| type II secretory pathway, component PulF [Pelobacter carbinolicus DSM 2380] Length = 402 Score = 48.2 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 57/163 (34%), Gaps = 7/163 (4%) Query: 23 IVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 ++ +++G+P+ +A ++ Q S ++ V + G SLSE+ + Y P Sbjct: 72 MLVLLKSGMPILQILASLVHDQDSANTKNVLTEVFTSVKGGRSLSEAFAGFPEYFPG--- 128 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + G+L + LA + +K ++++ ++ + + Sbjct: 129 --LYVASVASGEKTGDLPQTLARYLGYQKRMAQVKDRLKSAALYPLVLVAATILVLLFMV 186 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI-GIMVMRLMI 183 V + + A + G V+ +++ Sbjct: 187 FFVIPSFVQIYADAQVSLPFLTRFVLGLADLAARGWFVVLVLV 229 Score = 40.1 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 7/134 (5%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVR 74 N + +GLP+ +A+ + G ++ V E +VI + G SL ++ R Sbjct: 268 LVNFSRTTATILSSGLPLIEAMQLAGGVLNNTVLQEGVTKVIGAVNEGDSLGNALERHA- 326 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + G L ++ + K A E ++ Sbjct: 327 -----SFPQIAVRMIATGEKTGTLGLMFEEVAEYYESEIDHKLDRLAALAEPLILLFVGL 381 Query: 135 SLPFCVSTLVYFTS 148 + V + Sbjct: 382 VIGGIVIAIYLPIF 395 >gi|158312181|ref|YP_001504689.1| type II secretion system protein [Frankia sp. EAN1pec] gi|158107586|gb|ABW09783.1| type II secretion system protein [Frankia sp. EAN1pec] Length = 519 Score = 48.2 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 27/204 (13%), Positives = 61/204 (29%), Gaps = 20/204 (9%) Query: 1 MKHLIKKRTA-KFLDDFPNALDIIVRSVRAGLPVSDAVAVI------------------- 40 ++ +R + + L + + AG +A+ Sbjct: 50 IRRAADQRYEAELRGAAEDVLAALSTELDAGAAPDEALRTALYSVGDLPTRPGRRRRGAG 109 Query: 41 VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSE 100 GQ+ ++ + L +E +R++ + +T V G L+ Sbjct: 110 HGQAGVTGQAAGGLDLARLRELLPGAEDPARLLARCEAPALRQLATAYRVCRLAGVRLAP 169 Query: 101 ALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 L+ R ++ + ++S ++ LP L + VL+ Sbjct: 170 VATMLADAARADAARADELASALAGPRSSGRLVAGLPLLGLALGALVGASPVEVLLTGSA 229 Query: 161 GHMLLGVAAAFMLIGIMVMRLMIN 184 G L L G+ +R + + Sbjct: 230 GRACLTAGVLLDLAGLRWLRRIAD 253 >gi|164686715|ref|ZP_02210743.1| hypothetical protein CLOBAR_00310 [Clostridium bartlettii DSM 16795] gi|164604105|gb|EDQ97570.1| hypothetical protein CLOBAR_00310 [Clostridium bartlettii DSM 16795] Length = 395 Score = 48.2 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 54/162 (33%), Gaps = 9/162 (5%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L R D I + +G ++ V+ Q++ ++ +++ Sbjct: 46 RKLFSTRKKLSSKDLKILCKEIGILLESGSEITGLFQVLEKQANKKLKPVIKQISNGIQA 105 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S++ES S F + +L NL + + LS +K KV++ Sbjct: 106 GNSITESFRN------TNAFSKFFISMVHTGELSSNLDQVMYTLSDYYDKEARLKGKVKS 159 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 S+ + + V +++ P Y V Sbjct: 160 ASVYPI---ILFVATILSVLAMLFLVIPKYEEVYSQSTVEMP 198 Score = 34.3 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 12/126 (9%), Positives = 42/126 (33%), Gaps = 5/126 (3%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + +++G+ + +A+ + + + +++ + ++ + + Sbjct: 269 LYILIKSGVEIVNAIEISAKVVDK--KYIYDVILDANNSIKEGNKVGESL---NDINLFP 323 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + + G L EAL +++ + K +V E + + + V Sbjct: 324 TMFITMVSVGEESGKLEEALEMINKFYEGEIDQKTEVTMKYFETGITLVMGLIVGVVVIA 383 Query: 143 LVYFTS 148 +V Sbjct: 384 MVIPMF 389 >gi|317403490|gb|EFV83996.1| flp pilus assembly protein TadC [Achromobacter xylosoxidans C54] Length = 256 Score = 48.2 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 58/129 (44%), Gaps = 5/129 (3%) Query: 30 GLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 GL + ++ V++ + + + E R E G + +S++R+ ++S Sbjct: 121 GLSIDQSLQVLIKEFAQVLPVLAYELRLASELYVRGRTREQSLARLAAGFDNDDLSAICR 180 Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 +I+ Q GG + E L LR+++ ++ K + K +A +I +L + L+ Sbjct: 181 LIAQVDQHGGAVQEPLNRFGERLREKRRLELKEKVGKTTVKMTAVMIVTLLPAL--LIVT 238 Query: 147 TSPGYMNVL 155 G++ VL Sbjct: 239 GGAGFVAVL 247 >gi|168704472|ref|ZP_02736749.1| type 4 fimbrial assembly protein pilC [Gemmata obscuriglobus UQM 2246] Length = 399 Score = 48.2 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 20/169 (11%), Positives = 57/169 (33%), Gaps = 8/169 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + +G+P+ ++ ++ ++ ++S R V G L++S++ Sbjct: 62 RQVATMYAQLADLLHSGVPLLRSLELLERQSTNKLLQSVLRDVRARVADGTGLAQSMAAH 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + Q GG L + L ++ + ++++K+KV A Sbjct: 122 PK-----VFNELAVSMVRAGQEGGFLEDVLKRIAAFVEHQEDLKSKVVGAMAYPVFLALA 176 Query: 133 IGSLPFCVSTLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVM 179 + + L + L + + + G + Sbjct: 177 GAGVVAVLMVFFVPKFEPIFEKLKEKDQMPDITSLLLDVSHFIQGYWWL 225 Score = 36.3 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 10/135 (7%), Positives = 37/135 (27%), Gaps = 7/135 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 I+ + G+P+ ++ + + + + S + ++ Sbjct: 268 ALSRFCRILGTMLHNGIPLLKSLTIAKDSTGNKLLSASIEKAAENV------TAGQKLAD 321 Query: 75 YMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + ++ L + L +++ L R ++ +E + Sbjct: 322 PLRKSGHFPNDLVEMITIAEEANTLEKVLVDVADGLDKRTARNLELMVKLLEPLMLLCMA 381 Query: 134 GSLPFCVSTLVYFTS 148 + L+ Sbjct: 382 AVVGTIAVALLMPVF 396 >gi|327471793|gb|EGF17234.1| bacterial type II secretion system protein F [Streptococcus sanguinis SK408] Length = 408 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 18/171 (10%), Positives = 50/171 (29%), Gaps = 4/171 (2%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 L D + + +G+P+++AV ++ Q++ +++ S Sbjct: 57 KKIKLKDISLFCKQMSVMLESGIPLNNAVDILEQQATSKNLKSSLKIVSKSLKEGS---- 112 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + G L E L +S +++ + Sbjct: 113 QLSKAMLDQEGMFPDLLIRMVQAGEKTGKLDEVLEKMSEHYNKELKTSRQIRGAMIYPAV 172 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A++ + + +V + G + +AA+ + + Sbjct: 173 LAFLAVAAVLALLYVVIPSFSGIFEQSGMAMPLPTRIVLAASNFVRSYWYI 223 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ +A+ +++ V E ++ L + Sbjct: 270 FASTLAILTSAGIPLVEAIESAAATTNNAVVIEKMKIANE-----GLQKGERLTGMITAT 324 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G+L L S + K +E + + Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLVKTSDYYEEELETAIKQLLSLLEPAMIIVMGVIIGG 384 Query: 139 CVSTLVYFTS 148 V++++ Sbjct: 385 IVASVMLPMF 394 >gi|302553402|ref|ZP_07305744.1| integral membrane protein [Streptomyces viridochromogenes DSM 40736] gi|302471020|gb|EFL34113.1| integral membrane protein [Streptomyces viridochromogenes DSM 40736] Length = 307 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 62/156 (39%), Gaps = 4/156 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ ++ LD++ S+ G + +A+ S R + Sbjct: 152 VRRDAAEKRRDLRRVIGAYLDLVSMSLAGGRGLPEALMAAAEVSDGWANQRIRNALSDAR 211 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + S +++ + + ++E+ S +++ + G + E+LA+ + +R R+ + + Sbjct: 212 ITGVSQWQALGALGEELGVEELKDLSASLALVADDGAKVRESLASRAETMRHRELAEIE- 270 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 S K+ + ++ L C LV+ P M V Sbjct: 271 --GSAGEKSQSMLVAQLLLCAGFLVFLIFPAAMRVF 304 >gi|145628636|ref|ZP_01784436.1| putative type IV pilin secretion protein [Haemophilus influenzae 22.1-21] gi|144979106|gb|EDJ88792.1| putative type IV pilin secretion protein [Haemophilus influenzae 22.1-21] Length = 405 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 70/174 (40%), Gaps = 9/174 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71 + L+ + +++ +P+ +++ ++ + + +E+ R++++ GL+ S++I + Sbjct: 56 NSEISELLNQLATLLQSAIPLKNSLQILQQNCTQIMLNEWLERLLQSIESGLAFSQAIEQ 115 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 +Y+ QE + ++ G L+ ++ ++ K+Q + + Sbjct: 116 QGKYLTQQE-----IQLIQVGEMTGKLAVVCKKIATHRSQSLALQRKLQKIMLYPSMVLG 170 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML---IGIMVMRLM 182 I L + + + + + ++ + L IGI++ + Sbjct: 171 ISLLLTLALLLFIVPQFAEMYSGNNAELPTITAILLSISNFLKQNIGILLFFAL 224 Score = 39.7 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 12/136 (8%), Positives = 44/136 (32%), Gaps = 3/136 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESIS--RM 72 N + ++AG+P++ A+ + ++ ++ + + L Sbjct: 263 LVNFSQSLQIMLQAGVPLNQALDSFLPRTQTWQTKTLVNDIVLDKEVRSILQWVSQGYAF 322 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G L+ L +++ +++ N + + + +E I Sbjct: 323 SDSISSDLFPMEAQQMLQIGEQSGKLALMLEHIADNYQEKLNHQIDLLSQMLEPLMMVII 382 Query: 133 IGSLPFCVSTLVYFTS 148 + + + Sbjct: 383 GSLIGIIMMGMYLPIF 398 >gi|258511183|ref|YP_003184617.1| hypothetical protein Aaci_1197 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477909|gb|ACV58228.1| hypothetical protein Aaci_1197 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 293 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 24/172 (13%), Positives = 61/172 (35%), Gaps = 7/172 (4%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--TQHLGLSLSESI 69 F A+ I + ++RA + A + + D ++ + L ++ +++ Sbjct: 120 FDAILREAMPIAITTLRATNRLEAAFEDVARIARDKRLKTEFDMLAKTWRGLRVTPEQAL 179 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 ++E+ + ++ +L+E + ++ + K++A ++ + + Sbjct: 180 MLAASRWEIEEIVQLAKATEEATKYHADLAELWLKYREQIERDEDKRRKLRAKTLAGRRN 239 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 I + + L Y YM P H+ V ML V+ Sbjct: 240 GLIYAGIVVSMFGLAYPRVQRYM-----TPLAHIGFWVVLLIMLTCTWVIWR 286 >gi|225028137|ref|ZP_03717329.1| hypothetical protein EUBHAL_02409 [Eubacterium hallii DSM 3353] gi|224954449|gb|EEG35658.1| hypothetical protein EUBHAL_02409 [Eubacterium hallii DSM 3353] Length = 351 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 18/195 (9%), Positives = 55/195 (28%), Gaps = 18/195 (9%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +K R + + + +GL + + ++++ +E++++ E + Sbjct: 1 MKGRKMLSNSEVAVFCEQSGMILESGLSMLEGISIMEEDVE-LHNTEYKKMYEDMRMC-- 57 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L E+ + ++ + GNL + L+ +N ++ Sbjct: 58 LEETGIFHEALTKTGLFPSYVIQMTKIGEETGNLDVVMKGLAAYYEREENTMQDIKNAIS 117 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG---------------HMLLGVAA 169 ++ ++ + V L G ++ V Sbjct: 118 YPLMILCMLLAIMLVMVVKVVPVFNQVYEQLGTQITGPGAVLLKAGEALKQYWIIPTVLL 177 Query: 170 AFMLIGIMVMRLMIN 184 +G+ + Sbjct: 178 CVFAVGVWWLLKTTK 192 >gi|150402959|ref|YP_001330253.1| type II secretion system protein [Methanococcus maripaludis C7] gi|150033989|gb|ABR66102.1| type II secretion system protein [Methanococcus maripaludis C7] Length = 298 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 79/197 (40%), Gaps = 17/197 (8%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLG 62 + + + KF + P AL ++V S+ +G V +A+ ++ + + V+ Sbjct: 77 MYESKMDKFDQNIPKALYVMVLSLDSGRSVVEAINEVIRSGIPEVDVVFSKVVVLMTERK 136 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS +++ + + + +I + GG L++ L L++ L D +N+K+++ ++ Sbjct: 137 LSFEDAMILVSNSLDSKIFRQVGRLIIENRKYGGELADTLKKLAKTLEDLQNLKSQLLSV 196 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR----------------GHMLLG 166 + A II + + ++ L G L G Sbjct: 197 TANGLAVGLIILCGVIPATAGLIGGYLTVISQLAPSMPSVEASQISKAIETIQIGSGLFG 256 Query: 167 VAAAFMLIGIMVMRLMI 183 + A L G+ + R++I Sbjct: 257 LFFAVPLFGLKLNRMII 273 >gi|87200664|ref|YP_497921.1| general secretion pathway protein F [Novosphingobium aromaticivorans DSM 12444] gi|87136345|gb|ABD27087.1| General secretion pathway protein F [Novosphingobium aromaticivorans DSM 12444] Length = 409 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 16/160 (10%), Positives = 38/160 (23%), Gaps = 8/160 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + P+ + + I Q+ P + Sbjct: 70 KQLALFTRQLSSLMVV-SPLEETLRTIARQTEKPKAQAILT----NVHAGIVEGLPLAEA 124 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G+L L+ +L + ++ K+ A + Sbjct: 125 MRREEPSFPPIYRAMIAAGENSGSLPAIADRLADMLERQAQVRGKIIAALAYPI---VLS 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 V+ L+ P + N R +L + Sbjct: 182 LVAIAVVTGLMISVVPRVVEQFDNASRQLPMLTRVVIGIS 221 >gi|82703025|ref|YP_412591.1| general secretion pathway protein F [Nitrosospira multiformis ATCC 25196] gi|82411090|gb|ABB75199.1| General secretion pathway protein F [Nitrosospira multiformis ATCC 25196] Length = 401 Score = 47.8 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 6/131 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRM 72 ++ + + AGL V ++A ++ + +P+ E V GLSLS ++ Sbjct: 62 EELNLLTRQMATLLTAGLTVEQSLAALIESAEEPMTREVLGGVKTEVIAGLSLSAALGSY 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R P F + + G L L +L+ L R+ +K K + I Sbjct: 122 SRSFPD-----FYRALVHGGEESGTLPLVLRHLAEYLDARQTLKQKTSLALLYPALVTII 176 Query: 133 IGSLPFCVSTL 143 + + Sbjct: 177 AIIIVAGLLMY 187 Score = 34.7 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 41/130 (31%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + V G+P+ A++ S +R IE G SLS ++ Sbjct: 270 FASTLSILVGGGVPLLKALSSGARVMSSMVMRKAIENTIEQVREGASLSRALRE------ 323 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + ++ G L E L +++ + V +E + G + Sbjct: 324 TRVFPPLLVHLVASGEMSGKLKEMLERAAQLEAQALERRLGVFLTLLEPVMILVMGGVVL 383 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 384 MIVLAILLPI 393 >gi|149174858|ref|ZP_01853482.1| MSHA biogenesis protein MshG [Planctomyces maris DSM 8797] gi|148846195|gb|EDL60534.1| MSHA biogenesis protein MshG [Planctomyces maris DSM 8797] Length = 368 Score = 47.8 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 6/140 (4%) Query: 8 RTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 R K + D ++ +RAG+P+ + + + ++ G SL Sbjct: 8 RMPKISIASLVDLNDELIAMIRAGIPLDQGLRNAAAHLNRDSKQFIEQLALKIEEGSSLE 67 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E+I +P + + G L EAL+ + R R ++ ++ + Sbjct: 68 EAIQLGADKLPP-----SYISLLKSAIRMGKLPEALSAYTSFARSRMELRQEIGMALLYP 122 Query: 127 KASAWIIGSLPFCVSTLVYF 146 + L +++ Sbjct: 123 GIVLVMAFFLSLFACFIIFP 142 >gi|170720030|ref|YP_001747718.1| type II secretion system protein [Pseudomonas putida W619] gi|169758033|gb|ACA71349.1| type II secretion system protein [Pseudomonas putida W619] Length = 295 Score = 47.8 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 60/147 (40%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + ++R + + + ++ GL V A+ V+ + + E R+V++ Sbjct: 135 LAVAARRRQQRIALEVSLMIPLLRILFETGLAVEQALRVLSQEGQALLPEISEELRQVLQ 194 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL+L + + R + + E ++ G ++L L +L DR+ + Sbjct: 195 RVDSGLALGPELEKSARVLAVDEFIDTCVILQQLLVQGSGAMKSLLALKDLLDDRRLTRM 254 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + + M AK SA ++ L + ++ Sbjct: 255 QERVSKMSAKMSAVMMVFLFPALLIVL 281 >gi|326790819|ref|YP_004308640.1| type II secretion system F domain [Clostridium lentocellum DSM 5427] gi|326541583|gb|ADZ83442.1| Type II secretion system F domain [Clostridium lentocellum DSM 5427] Length = 404 Score = 47.8 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 21/163 (12%), Positives = 49/163 (30%), Gaps = 13/163 (7%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 ++AG+ + + + Q S+ ++ + G +LSE+ Sbjct: 71 FCKQFASMIQAGISIGKGLNICAQQCSNKTLKKHLEHIHSQVTEGKTLSEATRE------ 124 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + GNL + L ++ + KV+ I+ + Sbjct: 125 ENIFPDILVSMIECGEASGNLDKVLQQTVDHFDNQLGVTKKVKKALAYPTIVLVIVAVVV 184 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGIM 177 + V P +M +L + + +A + I Sbjct: 185 VILMVKVI---PNFMGLLTETGAEIPIPTQIVIAVSNFCIAKW 224 Score = 42.8 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 16/137 (11%), Positives = 44/137 (32%), Gaps = 5/137 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + V +G+P+ A+ + + V E + +SL + S Sbjct: 273 FASTMSMLVESGIPMLQAIEITKKVIGNAVADEELDLA-----IISLKQGQSLYDSLSGS 327 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L + L +S ++ ++ L +E + ++ + Sbjct: 328 IIYPPIMYSMINIGEETGALDDMLIKISVYFKEEVDIAVDNMTLLIEPALTIFMAVIVGG 387 Query: 139 CVSTLVYFTSPGYMNVL 155 + ++ T ++ Sbjct: 388 IMLAVMLPTFAAANAMM 404 >gi|90424502|ref|YP_532872.1| type II secretion system protein [Rhodopseudomonas palustris BisB18] gi|90106516|gb|ABD88553.1| type II secretion system protein [Rhodopseudomonas palustris BisB18] Length = 403 Score = 47.8 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 54/179 (30%), Gaps = 21/179 (11%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + ++AG ++DA+ ++ +R ++ G S +E++ R P Sbjct: 69 LTRDLALLIKAGARLNDALELLANDMDVGRLRPVVLKIRTAILSGESFAEALERHPAQFP 128 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++ G L L L + ++ KV G + Sbjct: 129 -----AMYVALIRVGEMSGTLDRILETLGTERNRAEALRRKVTDALQYPAFVLLAAGGVL 183 Query: 138 FCVSTLVYFTSP--------------GYMNVLINDPRGHML-LGVAAAFMLIGIMVMRL 181 V L + RGH + + AA ++IG ++ Sbjct: 184 IFFVCFVLPQFSSVLRDFNAKLDPVMEMFMALSDLLRGHGIEVAATAAGIIIGGWLLWR 242 >gi|238027558|ref|YP_002911789.1| type II secretion system protein [Burkholderia glumae BGR1] gi|237876752|gb|ACR29085.1| Type II secretion system protein [Burkholderia glumae BGR1] Length = 330 Score = 47.8 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 57/150 (38%), Gaps = 5/150 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHLGLSLS 66 D+ P +D++ GL + ++ VI + E G + Sbjct: 176 ESVADEMPLFVDMLRLLQGVGLSLDQSMQVITHDFTSMLPVLSWELGVAQRQFAAGRTRE 235 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S++R+ +++ ++ + GG + E L LR+ + + + + Sbjct: 236 QSLARLTTSFDNEDLRAIVRLLIQVDKHGGAVQEPLRLFGDRLREGRRATLRERIGRLTV 295 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 K + +I +L + L+ PG M V++ Sbjct: 296 KMTGVMIVTLLPAL--LIVTAGPGIMTVVV 323 >gi|325956434|ref|YP_004291846.1| Competence protein [Lactobacillus acidophilus 30SC] gi|325332999|gb|ADZ06907.1| Competence protein [Lactobacillus acidophilus 30SC] Length = 333 Score = 47.8 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 63/179 (35%), Gaps = 14/179 (7%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 K + LD + S+ G + +++ ++ + ++ G + S Sbjct: 9 KDKLNVEEQLA-FLDYLKHSLDNGFSLINSIELM-PALWPKRKELMGKLAMRMKEGANFS 66 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + ++ S + + GNL+E L L+ + R ++ K+++ Sbjct: 67 SELVKLG-------FSKTTVTQVNLALQQGNLTECLNQLATLNRLKQEQVKKLRSELSYP 119 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A ++ L + + + ++ G +++ V L+GI + ++ Sbjct: 120 FVLAIMMVVLLVFMQSFISTQFSD-----TSEHSGDLVMLVLIGLALVGIYFLAKIVTL 173 >gi|299066093|emb|CBJ37274.1| Type II secretory pathway [Ralstonia solanacearum CMR15] Length = 412 Score = 47.8 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 55/148 (37%), Gaps = 9/148 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+ V DA+ + + + + +R ++ G +LS ++ P Sbjct: 79 FARELAALLDAGVSVIDALRTLGSNERREASAAVYRDLLRRLEEGHALSAALELADNVFP 138 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 S+ G L+ +L S+ + ++A+V + S+ + S Sbjct: 139 P-----VLVACVKASEQTGGLAASLKRYSQNSATLQALRARVVSASIYPAVLLAVGAS-- 191 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLL 165 L+ F P + +L + R +L Sbjct: 192 -VALFLLAFVVPRFAGLLEHSGRELPML 218 >gi|302383559|ref|YP_003819382.1| type II secretion system F domain protein [Brevundimonas subvibrioides ATCC 15264] gi|302194187|gb|ADL01759.1| Type II secretion system F domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 407 Score = 47.8 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 21/176 (11%), Positives = 58/176 (32%), Gaps = 12/176 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + + + +A+ + Q+ V+ T L Sbjct: 66 SKTLSAVTRQLSTLIGSDIRIEEALRIAAQQTEGQ----PIGVVLTDVRAAILEGRSFAS 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + F + G L+ LA+L+ + +++ + KVQ + A + Sbjct: 122 ALARHPKVFPEFYRASIAAGEQSGKLATVLAHLTEFVGNQEKARRKVQLALLYPALLAVV 181 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHM-----LLGVAAAFMLIGIMVMRLMI 183 + ++ ++ + P + V ++ L+ ++A G+ V+ + Sbjct: 182 SLLM---ITLMMVYVVPDIVKVFVSRGAELPFLTRALIALSAFVQAFGLYVLIALA 234 Score = 39.7 bits (91), Expect = 0.17, Method: Composition-based stats. Identities = 17/131 (12%), Positives = 38/131 (29%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMVRYMP 77 + VR+ +P+ +A+ + + E V G SL +++ Sbjct: 275 FAGSLATLVRSDVPLVEALQASAAVTPNRYARERAFLVAARVREGASLRRAMAEA----- 329 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 I + G L L ++ L + + +E + G + Sbjct: 330 -DVFPPLLLAIVAAGEQSGKLGHGLERAAQDLEQELDSLVQALVSLVEPGVLLVMGGIVL 388 Query: 138 FCVSTLVYFTS 148 V ++ Sbjct: 389 LMVLAILMPIV 399 >gi|301169007|emb|CBW28604.1| putative type IV pilin secretion protein [Haemophilus influenzae 10810] Length = 405 Score = 47.8 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 70/174 (40%), Gaps = 9/174 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71 + L+ + +++ +P+ +++ ++ + + +E+ R++++ GL+ S++I + Sbjct: 56 NSEISELLNQLATLLQSAIPLKNSLQILQQNCTQIMLNEWLERLLQSIESGLAFSQAIEQ 115 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 +Y+ QE + ++ G L+ ++ ++ K+Q + + Sbjct: 116 QGKYLTQQE-----IQLIQVGEMTGKLAVVCKKIATHRSQSLALQRKLQKIMLYPSMVLG 170 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML---IGIMVMRLM 182 I L + + + + + ++ + L IGI++ + Sbjct: 171 ISLLLTLALLLFIVPQFAEMYSGNNAELPTITAILLSISNFLKQNIGILLFFAL 224 Score = 39.3 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 13/136 (9%), Positives = 44/136 (32%), Gaps = 3/136 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESIS--RM 72 N + ++AG+P++ A+ + ++ +I + + L Sbjct: 263 LVNFSQSLQIMLQAGIPLNQALDSFLPRTQTWQTKTLVNDIILDKEVRSILQWVSQGYAF 322 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G L+ L +++ +++ N + + + +E I Sbjct: 323 SDSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIADNYQEKLNHQIDLLSQMLEPLMMVII 382 Query: 133 IGSLPFCVSTLVYFTS 148 + + + Sbjct: 383 GSLIGIIMMGMYLPIF 398 >gi|319775834|ref|YP_004138322.1| putative type IV pilin secretion protein [Haemophilus influenzae F3047] gi|319896630|ref|YP_004134823.1| type iv pilin secretion protein [Haemophilus influenzae F3031] gi|317432132|emb|CBY80483.1| putative type IV pilin secretion protein [Haemophilus influenzae F3031] gi|317450425|emb|CBY86641.1| putative type IV pilin secretion protein [Haemophilus influenzae F3047] Length = 405 Score = 47.8 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 70/174 (40%), Gaps = 9/174 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71 + L+ + +++ +P+ +++ ++ + + +E+ R++++ GL+ S++I + Sbjct: 56 NSEISELLNQLATLLQSAIPLKNSLQILQQNCTQIMLNEWLERLLQSIESGLAFSQAIEQ 115 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 +Y+ QE + ++ G L+ ++ ++ K+Q + + Sbjct: 116 QGKYLTQQE-----IQLIQVGEMTGKLAVVCKKIATHRSQSLALQRKLQKIMLYPSMVLG 170 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML---IGIMVMRLM 182 I L + + + + + ++ + L IGI++ + Sbjct: 171 ISLLLTLALLLFIVPQFAEMYSGNNAELPTITAILLSISNFLKQNIGILLFFAL 224 Score = 38.2 bits (87), Expect = 0.53, Method: Composition-based stats. Identities = 13/136 (9%), Positives = 44/136 (32%), Gaps = 3/136 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESIS--RM 72 N + ++AG+P++ A+ + ++ +I + + L Sbjct: 263 LVNFSHSLQIMLQAGVPLNQALDSFLPRTQTWQTKTLVNDIILDKEVRSILQWVSQGYAF 322 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G L+ L +++ +++ N + + + +E I Sbjct: 323 SDSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIADNYQEKLNHQIDLLSQMLEPLMMVII 382 Query: 133 IGSLPFCVSTLVYFTS 148 + + + Sbjct: 383 GSLIGIIMMGMYLPIF 398 >gi|269216231|ref|ZP_06160085.1| putative TadC protein [Slackia exigua ATCC 700122] gi|269130490|gb|EEZ61568.1| putative TadC protein [Slackia exigua ATCC 700122] Length = 212 Score = 47.8 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 18/136 (13%), Positives = 43/136 (31%), Gaps = 1/136 (0%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESI 69 + D + +RAGL A A+ + D + R G+ + +E++ Sbjct: 69 RIERHASELFDAVSLGMRAGLSFDAAFALYCTRFDDELAGVCRDAHRAWSTGVLTRAEAL 128 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + + + F+ + + G + L LSR K + + + Sbjct: 129 ASIASKARSPTLERFAANVERNVRFGSPMGRMLDALSRESSGAYRTKIEERVAKAPIEML 188 Query: 130 AWIIGSLPFCVSTLVY 145 + + ++ Sbjct: 189 IPTATLILPAMLIVIL 204 >gi|229494787|ref|ZP_04388543.1| bacterial type II secretion system protein F domain protein [Rhodococcus erythropolis SK121] gi|229318283|gb|EEN84148.1| bacterial type II secretion system protein F domain protein [Rhodococcus erythropolis SK121] Length = 262 Score = 47.8 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 66/164 (40%), Gaps = 1/164 (0%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 L++++ + G + A +V + V + FR LG S + + + + Sbjct: 95 LEVLIAELSVGAHPAAASSVAGEECIGEVSAVFRSAGARARLGGS-AAAAFAVPDSCIER 153 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 E S +V V Q G L+E L + + R+ + + +A A+A+A ++ LP Sbjct: 154 EFSRIGSVWRVADQHGLALAELLGAVRTDMLGRRRFRQRTEAGLAGARATAAVLAFLPLL 213 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 L + VL G +LL + A + G++ + Sbjct: 214 GIGLGQLMGASPLRVLFGGGLGGVLLVIGTACVSAGLLWTDRIT 257 >gi|170731900|ref|YP_001763847.1| type II secretion system protein [Burkholderia cenocepacia MC0-3] gi|169815142|gb|ACA89725.1| type II secretion system protein [Burkholderia cenocepacia MC0-3] Length = 403 Score = 47.8 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 15/138 (10%), Positives = 43/138 (31%), Gaps = 6/138 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + ++AGL ++ ++ ++ ++ D V + G +++++R Sbjct: 69 FTRQLASLLQAGLLLAPSLEMLAHTRTRDGVPRIAAGLAREIVGGRRFADALARYPSQFG 128 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+L L ++ K++A A ++ Sbjct: 129 -----TLYRQLIEVGEASGSLGIVLTRVAEHRERADAQWRKLRAALAYPAAVILFALAIS 183 Query: 138 FCVSTLVYFTSPGYMNVL 155 + V T + Sbjct: 184 AALMVWVVPTFRQIFDGF 201 Score = 36.6 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 40/130 (30%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P++DA A + + + G+ L++++ Sbjct: 273 WCRSLATLLGAGVPLADAFATLERTAGHPVFAHATAHIAARVLRGVRLADAMHSAG---- 328 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ G L LA+++ + + + + A E + + Sbjct: 329 --CFPEDVVQPIAVAEETGALDTMLADIAALCERQLDARLDTLAALGEPLIVIVLGALVG 386 Query: 138 FCVSTLVYFT 147 V + Sbjct: 387 GLVIAMYLPI 396 >gi|119714631|ref|YP_921596.1| type II secretion system protein [Nocardioides sp. JS614] gi|119535292|gb|ABL79909.1| type II secretion system protein [Nocardioides sp. JS614] Length = 240 Score = 47.8 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 51/144 (35%), Gaps = 4/144 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D P+ +D+ ++R G +D +A++ P V LGL + S + Sbjct: 98 RRDLPHVVDLFAATLRGGAAPADGIALVCTALPGPAADRLAGVAARLALGLDPGQVWSAL 157 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + ++ G + A+ L+ L + + +A ++ KA+ + Sbjct: 158 ADDPH---LGRLGRTLARAHSSGAPVVAAVERLADDLARSARAETEERARAVGVKAALPL 214 Query: 133 -IGSLPFCVSTLVYFTSPGYMNVL 155 + LP V + + L Sbjct: 215 GLCLLPAFVLIGIVPLVVALLASL 238 >gi|312879793|ref|ZP_07739593.1| Type II secretion system F domain [Aminomonas paucivorans DSM 12260] gi|310783084|gb|EFQ23482.1| Type II secretion system F domain [Aminomonas paucivorans DSM 12260] Length = 385 Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 59/163 (36%), Gaps = 10/163 (6%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIETQHLGLSLSESISRMVRY 75 + +++GLP++ + ++ SS + +R + E+ G SL+ ++ + Sbjct: 64 QFCAALAGFLKSGLPLAQVLGLLERTSSKNQRLGDLYRTLRESVESGRSLAVALKESGLF 123 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + ++ L E L +R+ D ++ K+Q+ A I Sbjct: 124 RP------VLLGLVESAEASSKLPEILDRAARLFGDELKLRRKIQSAVTYPLAMLVIGVG 177 Query: 136 LPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGI 176 + + T V G + +LLGVA + Sbjct: 178 VVGFLLTYVVPRLTGLFAEIGAALPLPTRVLLGVAGVVKALAW 220 Score = 37.8 bits (86), Expect = 0.80, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 50/141 (35%), Gaps = 8/141 (5%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + +++G+P+ A+ + D R +R V E+ +G S+ Sbjct: 246 RGTRQQLALALVFAHLSTLLKSGIPLVQALELTAPMDRDRNR--WRAVAESVRMGYRFSQ 303 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + R + ++LGG+L ++L L +R + A E Sbjct: 304 GLERQG------GFPEDLLAVLRIAELGGDLPDSLERLGATCWERSQASLQRLADLAEPA 357 Query: 128 ASAWIIGSLPFCVSTLVYFTS 148 + G + F V ++ Sbjct: 358 IIVVLGGMVAFVVVAVLLPVF 378 >gi|296268209|ref|YP_003650841.1| type II secretion system protein [Thermobispora bispora DSM 43833] gi|296090996|gb|ADG86948.1| type II secretion system protein [Thermobispora bispora DSM 43833] Length = 260 Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 4/140 (2%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D P A+D++V +RAG PV AV V P+ V LG + + + Sbjct: 119 DLPFAIDLLVACLRAGQPVDRAVEVTADAIGGPLAERMSWVAVQLRLGADPGTAWAGLAD 178 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-I 133 P + F+ + ++ G +++ L L+ R + A + + A + + Sbjct: 179 EPP---AAPFARTMIRAAKGGAPVADVLVRLADDARQAARAASSAAARKVGVQVVAPLGL 235 Query: 134 GSLPFCVSTLVYFTSPGYMN 153 LP V + G + Sbjct: 236 CFLPAFVLLGIIPMIAGLIA 255 >gi|111225902|ref|YP_716696.1| hypothetical protein FRAAL6567 [Frankia alni ACN14a] gi|111153434|emb|CAJ65190.1| hypothetical protein; putative signal peptide [Frankia alni ACN14a] Length = 432 Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 52/172 (30%), Gaps = 6/172 (3%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-----VIETQHLGLSLSESISRM 72 + L + AG P A+ D + + + + + Sbjct: 62 DFLAAFAAELDAGGPHGHALRAAARGIDDLGAAPGQHPDWIPLDRLADTLAGPEDPAVAL 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R V + +G L+ A L+ + R ++ A ++S + Sbjct: 122 CRNEAGGV-RQLGIAYQVCTMVGARLAPATTMLATLARADAVRAGELAAALAGPRSSGRL 180 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + +LP L ++ L+ P G+ L L G+ +R + Sbjct: 181 VAALPLAGIALGSLAGAQPLHTLLATPAGNACLLAGGLADLAGLRWLRSFAD 232 >gi|189424512|ref|YP_001951689.1| type II secretion system protein [Geobacter lovleyi SZ] gi|189420771|gb|ACD95169.1| type II secretion system protein [Geobacter lovleyi SZ] Length = 405 Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 20/164 (12%), Positives = 55/164 (33%), Gaps = 11/164 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHLGLSLSESI 69 + +V +++G+P+ + I+ + +V E G +LS ++ Sbjct: 63 NRELLAFNQELVVLLKSGMPIVPVLDAILEHRRKAGGTFAQVLGQVREDVKGGAALSTAL 122 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 R R P ++ + G + + + L+ + ++ K+ + + Sbjct: 123 ERHGRLFPPLYLAS-----VRAGERTGEVPQTIRRYILFLKRSEELRKKLISALIYPS-- 175 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 ++ + L+ + P + +V + LL Sbjct: 176 -ILVVVAVLAIMLLLIYVVPTFSHVYADSGSQLPLLTRLLISFT 218 Score = 39.3 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 11/130 (8%), Positives = 46/130 (35%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+P+ +++ + +G ++ + + + Q + MP Sbjct: 274 FSRTLATLLGSGIPIVESLRMSLGTLNNRLLEQGMVIAIHQVEEGGRLSVALEQQQLMPP 333 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G++ E L++++ L + + ++ ++E + + Sbjct: 334 -----LALRMLGVGEATGSMEEMLSDVAEHLEAQVEERLQLLTTAIEPAVMLIMGLVIGI 388 Query: 139 CVSTLVYFTS 148 + + Sbjct: 389 IIVAMYLPIF 398 >gi|77458199|ref|YP_347704.1| type II secretion system protein [Pseudomonas fluorescens Pf0-1] gi|77382202|gb|ABA73715.1| putative general secretion pathway protein F [Pseudomonas fluorescens Pf0-1] Length = 395 Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 57/160 (35%), Gaps = 6/160 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + + AGLP+ DA+ + +++ R ++ + G S S+++ ++ Sbjct: 58 NLVLFSQELTTLLNAGLPLIDALESLAEKETAPAARKTLSELVRLLYEGKSFSQALGQLS 117 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 P + S+ G + +AL + ++ K+ + S+ + Sbjct: 118 AVFPP-----LYVALVQSSEKTGAVGDALGRYVSYRQRMDEVRQKIVSASIYPLLLLVVG 172 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 G + + V L ++ + +++ L Sbjct: 173 GGVVLFLMGYVVPRFSLVFEGLGSNLPWLSQILMSSGMFL 212 >gi|327183251|gb|AEA31698.1| Competence protein [Lactobacillus amylovorus GRL 1118] Length = 333 Score = 47.4 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 22/173 (12%), Positives = 62/173 (35%), Gaps = 14/173 (8%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + LD + S+ G + ++ ++ + ++ G + S + ++ Sbjct: 15 EEQLA-FLDYLKHSLDNGFSLISSIELM-PALWPKRKELMGKLAMRMKEGANFSSELVKL 72 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 S + + GNL+E L L+ + R ++ K+++ A + Sbjct: 73 G-------FSKTTVTQVNLALQQGNLTECLNQLATLNRLKQEQVKKLRSELSYPFVLAIM 125 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + L + + + ++ G +++ V +L+GI + ++ Sbjct: 126 MVVLLVFMQSFISTQFSD-----TSEHSGDLVMLVLIGLVLVGIYFLAKIVTL 173 >gi|126466360|ref|YP_001041469.1| type II secretion system protein [Staphylothermus marinus F1] gi|126015183|gb|ABN70561.1| type II secretion system protein [Staphylothermus marinus F1] Length = 591 Score = 47.4 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 66/177 (37%), Gaps = 6/177 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE---FRRVIETQHLGLS 64 R +FP + V +GL A I S +S R ++ + LG Sbjct: 97 RAGGIEGEFPYTTAYLSMMVMSGLSPYVAFERITHASKVFTKSAELSQRFILLVRVLGRD 156 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + S + P + GG++++ L +R+L +K K+ A + Sbjct: 157 PLTAFSMLAHRTPSPTARDLLMGYVTTVRAGGDVADYLNKKARLLFSELLVKMKIIADRL 216 Query: 125 EAKASAWIIGSLPFCV-STLVYFTSPGYMN--VLINDPRGHMLLGVAAAFMLIGIMV 178 A++ L + T++YF + +++ P G L+ M+ G+++ Sbjct: 217 AGLLEAYLALVLLSMISLTVMYFVTVSFISAVPFGLSPIGLFLVLYVLIPMISGMII 273 Score = 42.0 bits (97), Expect = 0.040, Method: Composition-based stats. Identities = 19/140 (13%), Positives = 50/140 (35%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R K + L +V + GL ++ + ++ +++ LG+SLS Sbjct: 374 REYKVVTGITRFLRDLVEIRKTGLSPERSIIELSRRNYGVFTKYLKKMALQLSLGISLSR 433 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 I + + + + V++ ++GG E + +L+ ++ + + Sbjct: 434 IIQELFKKIIVWRAKVLLFVLTDTIEVGGGSVEIMEHLAWFAESVDAIEDEKKKNLRTLL 493 Query: 128 ASAWIIGSLPFCVSTLVYFT 147 ++ G L ++ Sbjct: 494 IVPYMGGILTAATVIMLAAF 513 >gi|71082767|ref|YP_265486.1| type II secretion system PilC [Candidatus Pelagibacter ubique HTCC1062] gi|91762811|ref|ZP_01264776.1| Type II Secretion System PilC [Candidatus Pelagibacter ubique HTCC1002] gi|71061880|gb|AAZ20883.1| Type II Secretion System PilC [Candidatus Pelagibacter ubique HTCC1062] gi|91718613|gb|EAS85263.1| Type II Secretion System PilC [Candidatus Pelagibacter ubique HTCC1002] Length = 410 Score = 47.4 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 22/170 (12%), Positives = 56/170 (32%), Gaps = 7/170 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65 K+ K + V+AGLP+ + ++ Q ++ + ++ G++L Sbjct: 63 KKKVKVEEIL-IFSKQFATMVKAGLPILQVLIMLRDQLESPALKDIIEDIRKSLEGGVNL 121 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S+ + + + + G L L + L ++ +K K++ M Sbjct: 122 SKCFEKYPQ-----YFDNIYVNLIKAGEASGKLDVFLLKIVDSLEKKEKIKKKIKGALMY 176 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + ++ + V + + + +A + L G Sbjct: 177 PAIMFTVAITVSAFMLIKVVPVFAKMYDGMGLELPAATATIMAMSDFLSG 226 >gi|293606486|ref|ZP_06688844.1| type II secretion system protein [Achromobacter piechaudii ATCC 43553] gi|292815109|gb|EFF74232.1| type II secretion system protein [Achromobacter piechaudii ATCC 43553] Length = 330 Score = 47.4 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 68/158 (43%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + + +R D+ P +D++ GL + ++ V++ + + + E R E Sbjct: 166 VSRRLARRKRMAGDELPLLIDLLRLLQGVGLSIDQSMQVLIKEFAQVLPVLSYELRLASE 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S++R+ ++S +I+ Q GG + E L LRD++ ++ Sbjct: 226 GYVRGRTREQSLARLATGFDNDDLSAICRLIAQVDQHGGAVQEPLNRFGERLRDKRRLEL 285 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 K + K + +I +L + L+ G++ VL Sbjct: 286 KEKVAKTTVKMTGVMIVTLLPAL--LIVTGGAGFIAVL 321 >gi|307720189|ref|YP_003891329.1| Type II secretion system F domain-containing protein [Sulfurimonas autotrophica DSM 16294] gi|306978282|gb|ADN08317.1| Type II secretion system F domain protein [Sulfurimonas autotrophica DSM 16294] Length = 399 Score = 47.4 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 65/171 (38%), Gaps = 6/171 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISR 71 DDF ++ + ++G+P+ AV V+ + + + ++E G LS ++ + Sbjct: 56 QDDFLAFIEELYYLTKSGMPIDKAVKVLSQTTKKAAYKRILKTILEELKAGEQLSTALKK 115 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + ++ G+++ L L L +K +++ V+ Sbjct: 116 -ALKNENITIDSLAISFISTAEEVGSVTTGLYQLFEYLTFQKKIRSDVKQALAYPFFLIG 174 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + F + L+ P + + D L G++ A + G + M Sbjct: 175 MSIVVSFLIFFLII---PRFSTIFSADEFAQ-LPGISYAVLSTGKFLNAHM 221 >gi|297567921|ref|YP_003686891.1| Type II secretion system F domain protein [Meiothermus silvanus DSM 9946] gi|296852370|gb|ADH65383.1| Type II secretion system F domain protein [Meiothermus silvanus DSM 9946] Length = 400 Score = 47.4 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 14/136 (10%), Positives = 43/136 (31%), Gaps = 3/136 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 A+ + + G+P+ +A+ + + + V +V + L Sbjct: 259 DRAISKAMRTLAMLLEGGIPILEALETVSKSTGNAVYD---QVFSAIKEEIGLRAKNVSE 315 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + +L E + ++ +++A++ +E + + Sbjct: 316 AFRTQEAYFTAAAMQQLRVGEQSSHLPEMMNYIAEDHEKESSLRARMLPKVIEPISIILL 375 Query: 133 IGSLPFCVSTLVYFTS 148 G + V+ L Sbjct: 376 GGMVGLIVAGLFLPLF 391 >gi|167837985|ref|ZP_02464844.1| type IV pilus biogenesis protein PilC [Burkholderia thailandensis MSMB43] Length = 389 Score = 47.4 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 44/156 (28%), Gaps = 6/156 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AGL ++ ++ ++ + + + G S ++ R R Sbjct: 55 FARQLAGLLHAGLALAPSLELLAQATRRSEMPRIAAGLAREIVAGQQFSAALRRYPRQ-- 112 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 F + + G L+ LA L+ A+V+ A ++ Sbjct: 113 ---FDSFFCQLVAVGETAGALAAVLARLADDRERAAAQYARVRGALAYPVAVLLFALAIT 169 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + V T +A + + Sbjct: 170 AALLIWVVPTFEQIFAGFGATLPAPTRFILALSASV 205 >gi|168185181|ref|ZP_02619845.1| putative general secretion pathway protein F [Clostridium botulinum Bf] gi|182671776|gb|EDT83737.1| putative general secretion pathway protein F [Clostridium botulinum Bf] Length = 334 Score = 47.4 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 60/182 (32%), Gaps = 8/182 (4%) Query: 2 KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 K++ K R+ K D + + + +G+ ++DA+ + + I Sbjct: 45 KNVFKIRSEKITLKDCSILCNKLYMLMASGINITDAINIAYEDFHNVHVKNSLYTIRNNI 104 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L + + F + + G + L++L + ++ +++ Sbjct: 105 LRGDSIYNSFK----GFSNIYPKFLLSMIYIGEESGRIQYVLSDLKKFYENKYKFNKEIK 160 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA---FMLIGIM 177 + + + + +V + G N L L + A +++GI+ Sbjct: 161 NALIYPIIVLISFIIMLYILIHMVVPSFIGIFNELGGSIPKKTLGMITAIKVFNVILGIL 220 Query: 178 VM 179 + Sbjct: 221 FI 222 >gi|255594312|ref|XP_002536066.1| conserved hypothetical protein [Ricinus communis] gi|223521010|gb|EEF26318.1| conserved hypothetical protein [Ricinus communis] Length = 238 Score = 47.4 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 48/135 (35%), Gaps = 7/135 (5%) Query: 8 RTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSL 65 R + + + ++AG+P+ A+A + Q+ R V G L Sbjct: 30 RQPRVNTQTLILFCVQMEQLLQAGVPLLQALADLDEQNEHQGMKAALRNVQRDLEAGKLL 89 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S+++ + P + + G L E +L+R L + ++++V+ Sbjct: 90 SQALQAQPKIFPP-----LLGQLIDAGERTGQLPEIFGHLTRTLSWQAELRSQVRRGLTY 144 Query: 126 AKASAWIIGSLPFCV 140 ++ + + Sbjct: 145 PAVLCVMVAIAAYVM 159 >gi|319937914|ref|ZP_08012314.1| hypothetical protein HMPREF9488_03150 [Coprobacillus sp. 29_1] gi|319806820|gb|EFW03459.1| hypothetical protein HMPREF9488_03150 [Coprobacillus sp. 29_1] Length = 291 Score = 47.4 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 63/147 (42%), Gaps = 2/147 (1%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQH 60 +++I + ++F P ++ ++ S++ G+ + +A + + + E+ +++ Sbjct: 136 QNIISTKNSQFDKSLPMFINQVILSIKCGVSLENAFGFALRGMDKTLVQREYAKMVAELK 195 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + + + + R + +E F +I + G +S+ L + + D + + K Sbjct: 196 IYSDDIPKVFMNLNRRVHTEECERFCNIIVSGLKNGNKMSDILKSEYERISDNQIVALKK 255 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146 +A S + +A I + V L+ Sbjct: 256 KADSKKNLGTAINILLIFVPVILLLII 282 >gi|254521552|ref|ZP_05133607.1| type II secretion system protein [Stenotrophomonas sp. SKA14] gi|219719143|gb|EED37668.1| type II secretion system protein [Stenotrophomonas sp. SKA14] Length = 311 Score = 47.4 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 57/147 (38%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 + +K+R ++ P +D++ G + ++ + + + E + Sbjct: 147 LSAWVKRRRRAVENELPLLIDLLRLLQGVGFSMDQSLQTLGDKLRDALPILGGELQEANV 206 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++S+ R+ ++S +I GG + E L S LR+++ Sbjct: 207 AYTHGRTRAQSLRRLSDVYGDDDLSSLVQLILQVHAHGGAVQEPLRQFSIRLREQRRNSL 266 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 K + + K + ++ +L + ++ Sbjct: 267 KEKVGKLSVKMTVVMMLTLLPALMLVL 293 >gi|148825424|ref|YP_001290177.1| putative type IV pilin secretion protein [Haemophilus influenzae PittEE] gi|229846386|ref|ZP_04466494.1| putative type IV pilin secretion protein [Haemophilus influenzae 7P49H1] gi|148715584|gb|ABQ97794.1| putative type IV pilin secretion protein [Haemophilus influenzae PittEE] gi|229810479|gb|EEP46197.1| putative type IV pilin secretion protein [Haemophilus influenzae 7P49H1] Length = 405 Score = 47.4 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 70/174 (40%), Gaps = 9/174 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71 + L+ + +++ +P+ +++ ++ + + +E+ R++++ GL+ S++I + Sbjct: 56 NSEISELLNQLATLLQSAIPLKNSLQILQQNCTQIMLNEWLERLLQSIESGLAFSQAIEQ 115 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 +Y+ QE + ++ G L+ ++ ++ K+Q + + Sbjct: 116 QGKYLTQQE-----IQLIQVGEMTGKLAVVCKKIATHRSQSLALQRKLQKIMLYPSMVLG 170 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML---IGIMVMRLM 182 I L + + + + + ++ + L IGI++ + Sbjct: 171 ISLLLTLALLLFIVPQFAEMYSGNNAELPTITAILLSISNFLKQNIGILLFFAL 224 Score = 38.6 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 13/136 (9%), Positives = 44/136 (32%), Gaps = 3/136 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESIS--RM 72 N + ++AG+P++ A+ + ++ +I + + L Sbjct: 263 LVNFSQSLQIMLQAGVPLNQALDSFLPRTQTWQTKTLVNDIILDKEVRSILQWVSQGYAF 322 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G L+ L +++ +++ N + + + +E I Sbjct: 323 SNSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIADNYQEKLNHQIDLLSQMLEPLMMVII 382 Query: 133 IGSLPFCVSTLVYFTS 148 + + + Sbjct: 383 GSLIGIIMMGMYLPIF 398 >gi|237795338|ref|YP_002862890.1| general secretion pathway protein [Clostridium botulinum Ba4 str. 657] gi|229264143|gb|ACQ55176.1| general secretion pathway protein [Clostridium botulinum Ba4 str. 657] Length = 334 Score = 47.4 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 60/182 (32%), Gaps = 8/182 (4%) Query: 2 KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 K++ K R+ K D + + + +G+ ++DA+ + + I Sbjct: 45 KNVFKIRSEKITLKDCSILCNKLYMLMASGINITDAINIAYEDFHNVHVKNSLYTIRNNI 104 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L + + F + + G + L++L + ++ +++ Sbjct: 105 LRGDSIYNSFK----GFSNIYPKFLLSMIYIGEESGRIQYVLSDLKKFYENKYKFNKEIK 160 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA---FMLIGIM 177 + + + + +V + G N L L + A +++GI+ Sbjct: 161 NALIYPIIVLISFIIMLYILIHMVIPSFIGIFNELGGSIPKKTLGMITAIKVFNVILGIL 220 Query: 178 VM 179 + Sbjct: 221 FI 222 >gi|227505650|ref|ZP_03935699.1| type II secretion system protein [Corynebacterium striatum ATCC 6940] gi|227197803|gb|EEI77851.1| type II secretion system protein [Corynebacterium striatum ATCC 6940] Length = 257 Score = 47.4 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 53/187 (28%), Gaps = 8/187 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + + R + + L + +RAG + A+ V + Sbjct: 72 VNQARQARRGR--EHLATFLGTVAADLRAGATTAGALQRGVNSVPAECPAAVRLPLQTAA 129 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + V VI + + G L+ + L + Sbjct: 130 GMAAHGGHIHAPLVEAAD---PAVVRLGHVIRMSTAHGVALANLIEQAQAQLDAARRHAK 186 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++ +A+A I+ LP + ++ L+ G +LL V A G Sbjct: 187 STESSLQGPQATALILACLPLAGIAMGGAMGADSLSFLLGGGLGGLLLDVGVALACAGFA 246 Query: 178 VMRLMIN 184 R ++ Sbjct: 247 WSRYILR 253 >gi|84495076|ref|ZP_00994195.1| hypothetical protein JNB_09759 [Janibacter sp. HTCC2649] gi|84384569|gb|EAQ00449.1| hypothetical protein JNB_09759 [Janibacter sp. HTCC2649] Length = 204 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/126 (11%), Positives = 35/126 (27%), Gaps = 5/126 (3%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 +AL + ++R+GL +A+ + V + R V G + S + + Sbjct: 66 ADALVLCALALRSGLGPIEALEAVADHVGGAVARQLRVVASAHRWGQDAATSWAHVGEAW 125 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + Q G + + + +R + + + + Sbjct: 126 -----RPAALAWQAAEQSGAAPAGVVLAAAERMRREEASRVEAAVQRAGVLLVLPLGACF 180 Query: 137 PFCVST 142 Sbjct: 181 LPGFVG 186 >gi|242281057|ref|YP_002993186.1| type II secretion system protein [Desulfovibrio salexigens DSM 2638] gi|242123951|gb|ACS81647.1| type II secretion system protein [Desulfovibrio salexigens DSM 2638] Length = 403 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 16/155 (10%), Positives = 50/155 (32%), Gaps = 5/155 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + + +++G ++ ++ ++ S + + + G S S + + + Sbjct: 70 LGESFYYLGILIQSGTALAQSLDMMARMSGGKASHTWMEIRDAVQSGESFSSCLGKYPKI 129 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + ++ G L + L N+++ +R + ++ + I Sbjct: 130 FPQ-----VYVGMVQVAESVGKLGDVLENIAKYEEERAEVSGRLMTAMVYPVVILLIGMG 184 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + + + V G + + VA Sbjct: 185 AVYFLLSEVLPKITGIFKAAKGELPTSTKIVVALG 219 >gi|296394990|ref|YP_003659874.1| transmembrane protein [Segniliparus rotundus DSM 44985] gi|296182137|gb|ADG99043.1| putative transmembrane protein [Segniliparus rotundus DSM 44985] Length = 285 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 60/185 (32%), Gaps = 15/185 (8%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-------DPVRSEFRRVIETQHLGLSL 65 AL +V +R G + A A + + V R V LG + Sbjct: 97 EAAVQAALMAVVDELRVGAHPAHAFASAAQEGALAATCGGREVARTMREVAARARLGGDV 156 Query: 66 SE-------SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + + ++ + Q G +++ L ++ R + Sbjct: 157 GQGLRRRAAAARSAGLGLGGAFWERLASCWELSHQEGVPIAQVLGSVRADAVQRVRFAER 216 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 A A+A+A I+ LP L + VL +D G LL + F+ G+ Sbjct: 217 ADAALAGARATAKILSGLPLLCVVLGQSLGAQPLRVLFSDS-GSFLLMIGCGFLCAGLAW 275 Query: 179 MRLMI 183 R + Sbjct: 276 SRRIT 280 >gi|238760526|ref|ZP_04621660.1| Type II secretion system protein [Yersinia aldovae ATCC 35236] gi|238701242|gb|EEP93825.1| Type II secretion system protein [Yersinia aldovae ATCC 35236] Length = 303 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 55/165 (33%), Gaps = 8/165 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + + ++AGLP+ +++ ++ + P R + + G LSE+++ Sbjct: 48 ERLITVTRQLATLLQAGLPLVNSLQLLAKEMDALPWRCLLHEISQLVAQGKPLSEAMAHY 107 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P + +L GNL + L + ++ ++ KV I Sbjct: 108 PQTFP-----RLYPPVIAMGELTGNLEQCCTQLVQYQEQQQKLQKKVIKALKYPVFVCII 162 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHM--LLGVAAAFMLIG 175 + + +V LL ++A L G Sbjct: 163 ALVVAVVMLVMVLPEFAQIYQSFDTPLPALTAGLLFISAFITLYG 207 >gi|187779487|ref|ZP_02995960.1| hypothetical protein CLOSPO_03083 [Clostridium sporogenes ATCC 15579] gi|187773112|gb|EDU36914.1| hypothetical protein CLOSPO_03083 [Clostridium sporogenes ATCC 15579] Length = 402 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 60/182 (32%), Gaps = 8/182 (4%) Query: 2 KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 K++ K R+ K D + + + +G+ ++DA+ ++ ++ I+ Sbjct: 51 KNIFKIRSEKITLKDCSILCNKLYMLMASGINITDAINIVYEDFNNTPVKNSLYTIKNNI 110 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L + R F + + G + ++L ++ +++ Sbjct: 111 LRGDSIYNSFRA----FSNIYPKFLLSMIYIGEESGRIQYVFSDLKNFYENKYKFNKEIK 166 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA---FMLIGIM 177 + + + + +V + G N L L + A ++GI+ Sbjct: 167 NALIYPIIVLIAFIIMLYILIHMVVPSFIGIFNELGGSIPKKTLGMITAIKVFNAILGIL 226 Query: 178 VM 179 + Sbjct: 227 FI 228 Score = 38.2 bits (87), Expect = 0.51, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 47/130 (36%), Gaps = 5/130 (3%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 N + + +++G+P++ ++ ++ + + + E + +L ++ + S Sbjct: 271 NFSNSMNLMIKSGIPINKSLNLLEEITDNYIFKENIK-----NLNKNIKDGKSISFSLNK 325 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L E+ ++ IL+ K KV +E ++ + Sbjct: 326 CDFSNKILLSMVRVGEESGKLEESFYSVYNILKKDLEEKLKVSVKLIEPTIIIFMSLIIC 385 Query: 138 FCVSTLVYFT 147 + Sbjct: 386 IIFLYVFIPM 395 >gi|307354354|ref|YP_003895405.1| type II secretion system F domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307157587|gb|ADN36967.1| Type II secretion system F domain protein [Methanoplanus petrolearius DSM 11571] Length = 615 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 53/152 (34%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 + + P L I G+ + A+ +I + + SE R V + G Sbjct: 406 IRSRYVRNVEKQLPELLREISDMRDIGMTLQSAITMISSSKNSVLSSEIRIVSDEMKYGS 465 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 SLS ++ RM + L V +++ S++ + E LA L MK+K +S Sbjct: 466 SLSGALVRMEERVGLVSVKRAISLLVKASEVTDAIREILAIAISDLEHYLRMKSKRLNVS 525 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A ++ + + + Sbjct: 526 FVYLAVIYLSFGIYLYSAYQMNVAFISSFTDF 557 Score = 40.9 bits (94), Expect = 0.085, Method: Composition-based stats. Identities = 19/143 (13%), Positives = 51/143 (35%), Gaps = 4/143 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQHLGL-S 64 R + D P A+ + +++ + + + D + V E ++ L Sbjct: 114 RKNRIDMDLPYAITYM-QALSSTIVLYDIFRSVYEAEDLYGEVSRECGIIVRDVELFGED 172 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +++ +V P + + + + GGNL+ S R+ + + + Sbjct: 173 LLSAMNYVVTITPSERFKELIGDLILVYRSGGNLTNFFNAKSESYREIARQELEALLQFL 232 Query: 125 EAKASAWIIGSLPFCVSTLVYFT 147 E A ++ + ++ ++ Sbjct: 233 EMIAEIYVTAFVAGPIAIIIMLV 255 >gi|254252517|ref|ZP_04945835.1| Type II secretion system protein [Burkholderia dolosa AUO158] gi|124895126|gb|EAY69006.1| Type II secretion system protein [Burkholderia dolosa AUO158] Length = 303 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 34/83 (40%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R K + P+ LD IVR V G V A + + +P+RS V Sbjct: 115 LASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQSALLTTEEPLRSCLDDVSRMLR 174 Query: 61 LGLSLSESISRMVRYMPLQEVSF 83 G+ + ++ + + E Sbjct: 175 GGVEIDRAMMHVAKVYRTDESRT 197 >gi|83719565|ref|YP_441683.1| type IV pilus biogenesis protein PilC [Burkholderia thailandensis E264] gi|83653390|gb|ABC37453.1| type IV pilus biogenesis protein PilC [Burkholderia thailandensis E264] Length = 405 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 45/153 (29%), Gaps = 6/153 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AGL ++ ++ ++ + + + + G S ++ R R Sbjct: 71 FARQLAGLLHAGLALAPSLELLAQATRRNEMPRIAAGLAREIVAGRQFSAALRRYPRQFD 130 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 F + + G L+ LA L+ A+V+ A + ++ Sbjct: 131 P-----FFCQLVAVGETAGALAAVLARLADDRERAAAQYARVRGALAYPVAVLLVALAIT 185 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + V T +A + Sbjct: 186 AALLIWVVPTFEQIFAGFGAALPAPTRFVLALS 218 >gi|170695306|ref|ZP_02886452.1| type II secretion system protein [Burkholderia graminis C4D1M] gi|170139706|gb|EDT07888.1| type II secretion system protein [Burkholderia graminis C4D1M] Length = 409 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 21/169 (12%), Positives = 48/169 (28%), Gaps = 2/169 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + +RAGLP++ A+ ++ + R V + Sbjct: 62 RPKANAAEVTLFTRQLSSLLRAGLPLAPALDLLAQPQNSRRAGMPRIVGALARDIT--AG 119 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + + + + + G L LA ++ +AKV+A Sbjct: 120 LRFSAALHGHPAQFNALYCQLVQVGEAAGALPAVLARIADDRERAAAQRAKVRAALTYPV 179 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 A + ++ + V T + +A + + Sbjct: 180 AILLLAVAITAALLVWVVPTFKQIFDGFGARLPAPTQFVLALSSGVATW 228 >gi|290890797|ref|ZP_06553864.1| hypothetical protein AWRIB429_1254 [Oenococcus oeni AWRIB429] gi|290479569|gb|EFD88226.1| hypothetical protein AWRIB429_1254 [Oenococcus oeni AWRIB429] Length = 392 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 18/184 (9%), Positives = 54/184 (29%), Gaps = 23/184 (12%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 L ++ + +++G ++ A + I +SS L+L + Sbjct: 3 RRQQVEFLSLLGQLIQSGYSINQATNFIQQISRESS-------------WVKNLNLELAK 49 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + + ++ + GNL + L L+ + K++ + Sbjct: 50 GKNFAFAIKPYLNNSLNFQIGMADRYGNLEKILLQLADFSEKCLKQENKIKQILRYPLVL 109 Query: 130 AWIIGSLPFCVSTLVYFTSPGY-----MNVLINDPRGHMLLGVAAAFMLIGIMV--MRLM 182 +++ + V + + ++ + +L V + + + M Sbjct: 110 VFLLIGIAVAVKIFLLPILSSWSNQQRVDFVDEYFWFKVLGVVLMTLLFLFYRWQSFKKM 169 Query: 183 INFD 186 Sbjct: 170 SKLK 173 >gi|251790889|ref|YP_003005610.1| type II secretion system protein [Dickeya zeae Ech1591] gi|247539510|gb|ACT08131.1| type II secretion system protein [Dickeya zeae Ech1591] Length = 401 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 44/127 (34%), Gaps = 6/127 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65 + + + + AG+P+ +A+ + GQ+ V V E G+S Sbjct: 56 RYERLSTLELALLTRQLASLLDAGIPLEEALTTLAGQADKPAVGVVLNAVREQLIAGVSF 115 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++ + + + + G L+ L L+ L R+ K + + Sbjct: 116 AQALQTLP-----HSFNRLYCAMVAAGEATGGLALVLIRLADYLDQRQKTKNALIQALLY 170 Query: 126 AKASAWI 132 A + Sbjct: 171 PALLAVM 177 >gi|145634703|ref|ZP_01790412.1| putative type IV pilin secretion protein [Haemophilus influenzae PittAA] gi|145268248|gb|EDK08243.1| putative type IV pilin secretion protein [Haemophilus influenzae PittAA] Length = 406 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 70/174 (40%), Gaps = 9/174 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71 + L+ + +++ +P+ +++ ++ + + +E+ R++++ GL+ S++I + Sbjct: 56 NSEISELLNQLATLLQSVIPLKNSLQILQQDCTQIMLNEWLERLLQSIESGLAFSQAIEQ 115 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 +Y+ QE + ++ G L+ ++ ++ K+Q + + Sbjct: 116 QGKYLTQQE-----IQLIQVGEMTGKLAVVCKKIATHRSQSLALQRKLQKIMLYPSMVLG 170 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML---IGIMVMRLM 182 I L + + + + + ++ + L IGI++ + Sbjct: 171 ISLLLTLALLLFIVPQFAEMYSGNNAELPTITAILLSISNFLKQNIGILLFFAL 224 Score = 38.6 bits (88), Expect = 0.42, Method: Composition-based stats. Identities = 12/137 (8%), Positives = 43/137 (31%), Gaps = 4/137 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS--EFRRVIETQHLGLSLSESIS--R 71 N + ++AG+P++ A+ + ++ ++ + + L Sbjct: 263 LVNFSHSLQIMLQAGVPLNQALDSFLPRTQTWQTKKTLVNDIVLDKEVRSILQWVSQGYA 322 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + G L+ L +++ +++ N + + + +E Sbjct: 323 FSDSVSSDLFPMEVQQMLQIGEQSGKLALMLEHIADNYQEKLNHQIDLLSQMLEPLMMVI 382 Query: 132 IIGSLPFCVSTLVYFTS 148 I + + + Sbjct: 383 IGSLIGIIMMGMYLPIF 399 >gi|327400834|ref|YP_004341673.1| Type II secretion system F domain-containing protein [Archaeoglobus veneficus SNP6] gi|327316342|gb|AEA46958.1| Type II secretion system F domain protein [Archaeoglobus veneficus SNP6] Length = 635 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 10/157 (6%), Positives = 51/157 (32%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L ++ + P + AGL + +A+ V+ + E + G Sbjct: 421 LRERTVRQIEKRIPEIFKELAILNEAGLSIIEALKVLSTIELGVISKEINIIRRRIEWGE 480 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 +++++ + + + ++ + + +A ++ ++ ++++ Sbjct: 481 PVTKALRLLELRVRSEIIAKVIPISVKALETSPTYKDAFQTVAAFASAEVGLRERIRSSM 540 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 + ++ + + ++ ++ + Sbjct: 541 LLYIIIIYLSIFVFLLIIYILINNILSAFGGVVTEGV 577 Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 67/181 (37%), Gaps = 4/181 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIE-T 58 + +R + P+A++++ G+ D + + + EF +I+ T Sbjct: 133 SFISSRRRNEIDIYLPHAVNMMYGMAAGGIGTYDMIKSVAEAKFMFGELSKEFGTIIQLT 192 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L ++ + P +++S F + + GGNLS L N S + + + Sbjct: 193 DVFKEDLLSAMRHVRDTTPSEKLSSFLDDLIFIIKGGGNLSAFLKNKSDEFFEEQEVSFT 252 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM-NVLINDPRGHMLLGVAAAFMLIGIM 177 + ++ L F + L+ + ++N R +L+ + A + + Sbjct: 253 SYLDFLSVMTETYLAVFLLFPLFLLIVLVVMQIVGEDMLNTYRTGILILLPVATVFFTYL 312 Query: 178 V 178 + Sbjct: 313 I 313 >gi|294101766|ref|YP_003553624.1| Type II secretion system F domain protein [Aminobacterium colombiense DSM 12261] gi|293616746|gb|ADE56900.1| Type II secretion system F domain protein [Aminobacterium colombiense DSM 12261] Length = 396 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 63/182 (34%), Gaps = 9/182 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 M+ R L++ + + G +SD++ ++ + +RS +++ + Sbjct: 50 MRFFPSGRKNLSLEELCLFFTHLSAMISMGGTLSDSLYIMESELPQATLRSILQKIQDEL 109 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G S SES+ + + + G L + L LS R+ + K+ Sbjct: 110 RGGKSFSESLGLSG------DWPPGVLAMVSAGEESGELLKMLRYLSSYFMQRRVFRKKL 163 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA--AFMLIGIM 177 + A + + + V+ + L L ++ F+ +GI Sbjct: 164 IGALVYPAFVAIVSVVVLNILFFKVFPQIEAVLADLGIALPASTRLFLSFSKFFLTVGIG 223 Query: 178 VM 179 ++ Sbjct: 224 II 225 >gi|296165927|ref|ZP_06848400.1| bacterial type II secretion system protein F domain protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898719|gb|EFG78252.1| bacterial type II secretion system protein F domain protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 130 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 40/105 (38%) Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + S G ++ + R + +R+ A+V + A+A+A I+ +LP Sbjct: 22 HWDRLALCWQLASDHGLAVATLMRAAQRDIAERQRFSARVASNMAGARATAAILAALPVL 81 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + L++ G LL + +G+ + + Sbjct: 82 GLVLGQLIGARPLGFLLDGHAGGWLLVTGSTLACVGLWWADRITD 126 >gi|171463464|ref|YP_001797577.1| type II secretion system protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193002|gb|ACB43963.1| type II secretion system protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 140 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 41/113 (36%), Gaps = 6/113 (5%) Query: 26 SVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMPLQEVSFF 84 +R+GL + ++ ++ Q +P E ++ G SLS+S ++ + Sbjct: 1 MLRSGLSILPSLEMVRDQVENPTLKETVNQIYIDVESGSSLSQSFTKHPDI-----FNAI 55 Query: 85 STVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G L L L +R ++ +Q+ + + + Sbjct: 56 YINMVKAGESSGRLDIFLDKLVLSIRKTIKIRKSIQSAMLYPAILLIVATVVV 108 >gi|159905296|ref|YP_001548958.1| type II secretion system protein [Methanococcus maripaludis C6] gi|159886789|gb|ABX01726.1| type II secretion system protein [Methanococcus maripaludis C6] Length = 298 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 81/197 (41%), Gaps = 17/197 (8%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLG 62 + + + KF + P AL ++V S+ +G V +A+ ++ V + F + V+ Sbjct: 77 MYESKMDKFDKNIPKALYVMVLSLDSGRSVVEAINEVIRSGILEVDAVFSKVVVLMTERK 136 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS +++ + + + +I + GG L++ L L++ L D +N+K+++ ++ Sbjct: 137 LSFEDAMILVSNSLDSKIFRQVGRLIIENRKYGGELADTLKKLAKTLEDLQNLKSQLMSV 196 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR----------------GHMLLG 166 + A II + + ++ L G + G Sbjct: 197 TANGLAVGLIILCGVIPATAGLIGGYLTVISQLAPSMPSVEASQISKAIETIQIGAGMFG 256 Query: 167 VAAAFMLIGIMVMRLMI 183 + A L G+ + R++I Sbjct: 257 LLFAVPLFGLKINRMII 273 >gi|88601624|ref|YP_501802.1| type II secretion system protein [Methanospirillum hungatei JF-1] gi|88187086|gb|ABD40083.1| type II secretion system protein [Methanospirillum hungatei JF-1] Length = 625 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 72/180 (40%), Gaps = 7/180 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQHLGL-S 64 R + D P A+ + +++ + + + + I V EF ++ + Sbjct: 101 RKSSIDLDLPYAITYM-QALSTTMTLYNVIRKIYEADDLFGEVGKEFGLIVRDVEVFGDD 159 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +I + + P + + F + + S GG+++ L++ S R+ + + ++ Sbjct: 160 LYTAIRNLQKVTPSKNLEEFLNDLLLLSNSGGDVTNFLSSRSAYFRESAARELESILKTI 219 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-HMLLGVAAAFMLIGIMVMRLMI 183 E A ++ + ++ ++ + +D G L+ + A IG++ + ++ Sbjct: 220 EVMAEVYVTAFVAGPITMIIIIVAQNLGGK--SDLAGYMPLIIIGLALGSIGMIYILYLM 277 Score = 40.9 bits (94), Expect = 0.083, Method: Composition-based stats. Identities = 16/139 (11%), Positives = 44/139 (31%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 P L +V G+ + A+++I + E E G + ++ RM + Sbjct: 406 PEFLRQLVDMKDVGVTLQTAISLISNSKLGVLSQELVMTSEDIRRGATTINALVRMEDRI 465 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 L V +++ S++ + + L +K +++ ++ + Sbjct: 466 GLVSVKRAISLLVKASEVTDYIKDVLIIAINDFEHYLKLKKDRFNIAITYVMIVYLAVGI 525 Query: 137 PFCVSTLVYFTSPGYMNVL 155 + + + Sbjct: 526 YMYTAYSLNVSFVSSFTNF 544 >gi|270263974|ref|ZP_06192242.1| type IV pilin biogenesis protein [Serratia odorifera 4Rx13] gi|270042167|gb|EFA15263.1| type IV pilin biogenesis protein [Serratia odorifera 4Rx13] Length = 399 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 55/169 (32%), Gaps = 8/169 (4%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYM 76 + ++AGLP+ + + ++ + R + E G S+ I+ Sbjct: 63 QFTRQLATLLQAGLPLVNGLQLLAEEHPSAAWRCLLREITEQVRQGQPFSDVIAGQRAIF 122 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 PL + +L GNL L++ ++ ++ KV + + Sbjct: 123 PL-----IYRQLIAIGELTGNLDACCLQLAQQQEAQQKLQKKVIKALRYPLFICAVALLV 177 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183 + +V G LL ++A + G ++ +M Sbjct: 178 SILMLVMVLPEFAGVYQSFDAPLPWFTQGLLNLSAILVHSGPWLVLIMA 226 >gi|170759525|ref|YP_001787248.1| general secretion pathway protein [Clostridium botulinum A3 str. Loch Maree] gi|169406514|gb|ACA54925.1| general secretion pathway protein [Clostridium botulinum A3 str. Loch Maree] Length = 334 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/170 (11%), Positives = 52/170 (30%), Gaps = 5/170 (2%) Query: 2 KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 K++ K R+ K D + + + +G+ ++DA+ + + I Sbjct: 45 KNVFKIRSEKITLKDCSILCNKLYMLMASGINITDAINIAYEDFHNVHVKNSLYTIRNNI 104 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L + + F + + G + L++L ++ +++ Sbjct: 105 LRGDSIYNSFK----GFSNIYPKFLLSMIYIGEESGRIQYVLSDLKNFYENKYKFNKEIK 160 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + + + + +V + G N L L + A Sbjct: 161 NALIYPIMVLITFIIMLYILIHMVVPSLIGIFNELGGSIPKKTLGMITAI 210 >gi|167580492|ref|ZP_02373366.1| type IV pilus biogenesis protein PilC [Burkholderia thailandensis TXDOH] Length = 405 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 45/153 (29%), Gaps = 6/153 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AGL ++ ++ ++ + + + + G S ++ R R Sbjct: 71 FARQLAGLLHAGLALAPSLELLAQATRRNEMPRIAAGLAREIVAGRQFSAALRRYPRQFD 130 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 F + + G L+ LA L+ A+V+ A + ++ Sbjct: 131 P-----FFCQLVAVGETAGALAAVLARLADDRERAAAQYARVRGALAYPVAVLLVALAIT 185 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + V T +A + Sbjct: 186 AALLIWVVPTFEQIFAGFGAALPAPTRFVLALS 218 >gi|163846483|ref|YP_001634527.1| hypothetical protein Caur_0905 [Chloroflexus aurantiacus J-10-fl] gi|222524263|ref|YP_002568734.1| hypothetical protein Chy400_0986 [Chloroflexus sp. Y-400-fl] gi|163667772|gb|ABY34138.1| conserved hypothetical protein [Chloroflexus aurantiacus J-10-fl] gi|222448142|gb|ACM52408.1| conserved hypothetical protein [Chloroflexus sp. Y-400-fl] Length = 308 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 22/191 (11%), Positives = 64/191 (33%), Gaps = 11/191 (5%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLG--- 62 + + A+ + + GL + A+ ++ P+R E+R ++ Q Sbjct: 117 RYNRHLERELTPAIGRLSALLSGGLGLRTALERVLTDMGDGPLRDEWRWLLRQQGTPLAD 176 Query: 63 ---LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 +L + I+ + + ++V + +L + + + Sbjct: 177 GSIATLRQVIAALAAQTSASRHATLLNHLAVAADQPQDLQARRCAAAYAALQVSERRREE 236 Query: 120 Q-ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH---MLLGVAAAFMLIG 175 + + S +G ++ + T + + + P G +++ +A +IG Sbjct: 237 ALTELAQMRYSGLAVGGAGCLMALYLIATQWERVRIAYSTPLGMVFAVIVTLALLAPMIG 296 Query: 176 IMVMRLMINFD 186 + + + D Sbjct: 297 GFLFSQVEDVD 307 >gi|295107881|emb|CBL21834.1| Bacterial type II secretion system protein F domain. [Ruminococcus obeum A2-162] Length = 341 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/155 (13%), Positives = 51/155 (32%), Gaps = 8/155 (5%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-------SSDPVRSEFRRVIETQ 59 KR + L D+P+ + ++AG+ + + + Sbjct: 187 KRAEQLLMDYPSLIMKFTLLIQAGMTARKVFQKMSADYMRNRSKTGRYAYEAITIMCHEM 246 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAK 118 G++ E+ R + FST++ + +++ L + D + KA+ Sbjct: 247 DSGVAEMEAYRRFGERCGQMKYKTFSTILIQNLQKGSHRMADLLEKEALEAWDERKRKAR 306 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153 V + K +I L ++ ++ + Sbjct: 307 VLGETAATKLLVPMIMMLAVVMAIIMIPAFLSFYG 341 >gi|167949750|ref|ZP_02536824.1| putative type II secretion system protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 267 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/149 (14%), Positives = 52/149 (34%), Gaps = 9/149 (6%) Query: 26 SVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFF 84 + +G+P S+A+ + +P + + G S+SE++ + S Sbjct: 1 MLGSGIPASEALQEAAQGTENPTLALAMEDIRFYVEAGSSISEAVGLYPKI-----FSNT 55 Query: 85 STVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144 + + G + AL + L+ + +K+ + + +I+ ++ V Sbjct: 56 VLYLLRIGEETGRIDRALEVAATHLQRIEQIKSDTKQAMLYPS---FILVTMGAAVIFWF 112 Query: 145 YFTSPGYMNVLINDPRGHMLLGVAAAFML 173 Y+ P + + L A + Sbjct: 113 YYVVPQIVTLFTEMEVELPPLTKALIAIS 141 >gi|17547028|ref|NP_520430.1| GSPF-related transmembrane protein [Ralstonia solanacearum GMI1000] gi|17429329|emb|CAD16016.1| probable type II secretory pathway, gspf-related transmembrane protein [Ralstonia solanacearum GMI1000] Length = 400 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 57/148 (38%), Gaps = 9/148 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+ V DA+ + + + + +R ++ G +LS ++ P Sbjct: 67 FARELAALLDAGVSVIDALRTLGSNERREASAAVYRDLLRRLEEGHALSAALELADNVFP 126 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 S+ G L+ +L S+ + ++A+V + S+ + GS+ Sbjct: 127 P-----VLVACVKASEQTGGLAASLKRYSQNSATLQALRARVVSASIYPAVLLAVGGSVA 181 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLL 165 L+ F P + +L + R +L Sbjct: 182 V---FLLAFVVPRFAGLLEHSGRELPML 206 >gi|146298377|ref|YP_001192968.1| type II secretion system protein [Flavobacterium johnsoniae UW101] gi|146152795|gb|ABQ03649.1| GspF-like type II secretion system protein [Flavobacterium johnsoniae UW101] Length = 375 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/177 (11%), Positives = 57/177 (32%), Gaps = 16/177 (9%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + +++G+ A+ ++ QS+ + E ++E + +S M Sbjct: 41 FYRELGMLLKSGVDFKKALEILSNQSAHKLEKE--IILEIKEKVISGRSIYESMKETNQF 98 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 ++S + L E L L + + MK ++ ++ + + + Sbjct: 99 SAYEYYS---IQIGEETRKLEEVLGELQKYFNRKIQMKRQIVSVLTYPAIVMIVTVLVLY 155 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGV-----------AAAFMLIGIMVMRLMIN 184 + V ++ + + ++IG+++M M+ Sbjct: 156 FMLNKVVPMFSSVFKQFGSELPKSTQVIIKISNHSGTIFSIVFAVIIGLVIMHTMLK 212 >gi|217977096|ref|YP_002361243.1| type II secretion system protein [Methylocella silvestris BL2] gi|217502472|gb|ACK49881.1| type II secretion system protein [Methylocella silvestris BL2] Length = 404 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/143 (13%), Positives = 50/143 (34%), Gaps = 9/143 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 ++ + +R G +++A+ ++ S +R ++ G S ++S++ Sbjct: 65 EEVTFFTGDLALLLRTGARINEALELVATDSDVGRLRPTIAKLTAAILGGESFADSLAHH 124 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P + + GNL L ++ + ++ KV ++ Sbjct: 125 PALFPP-----MYVALVRVGETSGNLVPVLEAIAAERTRAEALRRKVGDALRYPA---FV 176 Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155 + + + + F P + VL Sbjct: 177 LSAAGAVLIFFLTFVLPQFGAVL 199 >gi|51891534|ref|YP_074225.1| hypothetical protein STH396 [Symbiobacterium thermophilum IAM 14863] gi|51855223|dbj|BAD39381.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 273 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/147 (13%), Positives = 49/147 (33%), Gaps = 3/147 (2%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 D P L + +G+ + A+ ++ P+ E R + +G ++ Sbjct: 126 VQRDLPYFLFTLAVLAESGMQLLPALDHYARNAAAPLGREVRSALAEIRMGQPPGMALLE 185 Query: 72 MVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 M + + +++++ + + L+ AL + DR+ A+ K Sbjct: 186 MAQRLDVRDLTRAVGALVQTMEKGTEGLAAALRAQAAEAWDRRRRLAQEAGAQASVKLLV 245 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLIN 157 ++ + V + P L Sbjct: 246 PLVLFVLPAVLAM--AAGPAIYAFLTQ 270 >gi|16272252|ref|NP_438464.1| putative type IV pilin secretion protein [Haemophilus influenzae Rd KW20] gi|260581234|ref|ZP_05849053.1| general secretion pathway protein F [Haemophilus influenzae RdAW] gi|1170331|sp|P44621|HOFC_HAEIN RecName: Full=Protein transport protein hofC homolog gi|1573265|gb|AAC21961.1| protein transport protein [Haemophilus influenzae Rd KW20] gi|260092159|gb|EEW76103.1| general secretion pathway protein F [Haemophilus influenzae RdAW] Length = 406 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/162 (11%), Positives = 64/162 (39%), Gaps = 6/162 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71 + L+ + +++ +P+ +++ ++ + V +E+ R++++ GL+ S++I + Sbjct: 56 NSEISELLNQLATLLQSAIPLKNSLQILQQNCTQIVLNEWLERLLQSIESGLAFSQAIEQ 115 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 +Y+ QE + ++ G L+ ++ ++ K+Q + + Sbjct: 116 QGKYLTQQE-----IQLIQVGEMTGKLAVVCKKIATHRSQSLALQRKLQKIMLYPSMVLG 170 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 I L + + + + + ++ + L Sbjct: 171 ISLLLTLALLLFIVPQFAEMYSGNNAELPTITAILLSISNFL 212 Score = 39.3 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 12/137 (8%), Positives = 44/137 (32%), Gaps = 4/137 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS--EFRRVIETQHLGLSLSESIS--R 71 N + ++AG+P++ A+ + ++ ++ + + L Sbjct: 263 LVNFSQSLQIMLQAGVPLNQALDSFLPRTQTWQTKKTLVNDIVLDKEVRSILQWVSQGYA 322 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + + G L+ L +++ +++ N + + + +E Sbjct: 323 FSNSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIAENYQEKLNHQIDLLSQMLEPLMMVI 382 Query: 132 IIGSLPFCVSTLVYFTS 148 I + + + Sbjct: 383 IGSLIGIIMMGMYLPIF 399 >gi|146338382|ref|YP_001203430.1| putative general secretion pathway protein F [Bradyrhizobium sp. ORS278] gi|146191188|emb|CAL75193.1| putative general secretion pathway protein F [Bradyrhizobium sp. ORS278] Length = 389 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 43/138 (31%), Gaps = 6/138 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + ++AG + DA+ ++ G + +R+ R+ + G S +++++ P Sbjct: 55 FTRDLALLLKAGARLEDALELLAGDADIGRLRAIVSRLRSSILAGESFADALAHHPTQFP 114 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+L L L + M+ K+ + Sbjct: 115 P-----MYLALVRVGEASGSLDHVLDVLGAERARAEAMRRKLGDALQYPLFVLVAAFLVM 169 Query: 138 FCVSTLVYFTSPGYMNVL 155 +V + Sbjct: 170 LFFFIVVLPQFSTVLRDF 187 >gi|296118088|ref|ZP_06836670.1| membrane protein [Corynebacterium ammoniagenes DSM 20306] gi|295968974|gb|EFG82217.1| membrane protein [Corynebacterium ammoniagenes DSM 20306] Length = 264 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 57/185 (30%), Gaps = 2/185 (1%) Query: 1 MKHLIKKRTA-KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 + + KR + D L + +RAG A+ + + Sbjct: 75 LTQMHDKRVNLRAEDAIAQLLGTMTADLRAGATFPAALKRGADELAVSATVSMDIKAAIA 134 Query: 60 HLGLSL-SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + V +++ + S+ + G LS + RK +A Sbjct: 135 TAAVIAHRGGSISTVLSTSHPQLTNLGALCSLNEKHGIPLSNVFEQAHNQIESRKRHRAA 194 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 +A +A+A ++ LP + L G +LL V A G + Sbjct: 195 TKASLQGPQATAIVLTLLPLAGIFMGTIMGANPAGFLFGGGLGGLLLVVGVALACAGFIW 254 Query: 179 MRLMI 183 R++I Sbjct: 255 SRMLI 259 >gi|238783682|ref|ZP_04627702.1| General secretion pathway protein [Yersinia bercovieri ATCC 43970] gi|238715395|gb|EEQ07387.1| General secretion pathway protein [Yersinia bercovieri ATCC 43970] Length = 389 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 62/190 (32%), Gaps = 24/190 (12%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 D + V + +P+ + + +I QS V + V + G SLS+S+S Sbjct: 49 SADLVLLTRQMSILVSSDIPLDETLKIIEKQSKKRYVSTVIHDVRKKVVEGYSLSDSLSY 108 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 R + + +L G+L L+ L+ + + ++ K+ + + Sbjct: 109 FPR-----VFNVLYRSMIAAGELSGHLGLVLSQLAEHIEQTQRLQRKIVQALIYPAILIF 163 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG--------------VAAAFMLIGIM 177 I + L+ P + D + L + + + + Sbjct: 164 ISAG---VIIILLSVVIPNIIESFSFDNQELPLSTRAIMNISYYLKNNMLLIVIIAVALW 220 Query: 178 V-MRLMINFD 186 + +R + Sbjct: 221 IGLRRALKIK 230 >gi|170739450|ref|YP_001768105.1| type II secretion system protein [Methylobacterium sp. 4-46] gi|168193724|gb|ACA15671.1| type II secretion system protein [Methylobacterium sp. 4-46] Length = 404 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 5/128 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L + AGL V A+ ++ QS +R V++ G SLS +++ + P Sbjct: 71 FLKEFGTLLGAGLTVDRALRLVERQSPGALRPVLADVLQRVLAGASLSRAMAAHPQAFP- 129 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + G L E +A L+ L R ++ + + + + Sbjct: 130 ----REMVDGLRAGEATGTLGEVVATLTASLERRDAVRRHLASAMIYPALLILMGLGTLG 185 Query: 139 CVSTLVYF 146 V ++ Sbjct: 186 MVIGVLVP 193 >gi|295106650|emb|CBL04193.1| Type II secretory pathway, component PulF [Gordonibacter pamelaeae 7-10-1-b] Length = 350 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/159 (11%), Positives = 48/159 (30%), Gaps = 8/159 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + + AG+ +AV+++ + V G L++++ Sbjct: 14 FCESVAIMLAAGIQTDEAVSLLGENMEDGAFKRACDAVYLRLIAGEPLAKALD------G 67 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++ G L L L+ + + AK+++ + A ++ + Sbjct: 68 SGFFPRHVVDMVGAGEVSGRLEPTLRTLAVYYDEEGRLFAKMRSSIVYPAALLCVMSVIL 127 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 ++ L + A + IG Sbjct: 128 AFTVAVILPVFVDVYESLSGNLAAGS-FNAVGASIGIGW 165 >gi|260582604|ref|ZP_05850394.1| general secretion pathway protein F [Haemophilus influenzae NT127] gi|260094415|gb|EEW78313.1| general secretion pathway protein F [Haemophilus influenzae NT127] Length = 406 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/162 (11%), Positives = 64/162 (39%), Gaps = 6/162 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71 + L+ + +++ +P+ +++ ++ + V +E+ R++++ GL+ S++I + Sbjct: 56 NSEISELLNQLATLLQSAIPLKNSLQILQQNCTQIVLNEWLERLLQSIEAGLAFSQAIEQ 115 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 +Y+ QE + ++ G L+ ++ ++ K+Q + + Sbjct: 116 QGKYLTQQE-----IQLIQVGEMTGKLAVVCKKIATHRSQSLALQRKLQKIMLYPSMVLG 170 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 I L + + + + + ++ + L Sbjct: 171 ISLLLTLALLLFIVPQFAEMYSGNNAELPTITAILLSISNFL 212 Score = 38.6 bits (88), Expect = 0.37, Method: Composition-based stats. Identities = 13/137 (9%), Positives = 44/137 (32%), Gaps = 4/137 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS--EFRRVIETQHLGLSLSESIS--R 71 N + ++AG+P++ A+ + ++ +I + + L Sbjct: 263 LVNFSQSLQIMLQAGVPLNQALDSFLPRTQTWQTKKTLVNDIILDKEVRSILQWVSQGYA 322 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + + G L+ L +++ +++ N + + + +E Sbjct: 323 FSNSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIAENYQEKLNHQIDLLSQMLEPLMMVI 382 Query: 132 IIGSLPFCVSTLVYFTS 148 I + + + Sbjct: 383 IGSLIGIIMMGMYLPIF 399 >gi|171060549|ref|YP_001792898.1| type II secretion system protein [Leptothrix cholodnii SP-6] gi|170777994|gb|ACB36133.1| type II secretion system protein [Leptothrix cholodnii SP-6] Length = 397 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/154 (11%), Positives = 45/154 (29%), Gaps = 4/154 (2%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D +V + AGL + +AV ++ + + + V+ L + S Sbjct: 60 DLELFSQELVSLLGAGLSLVEAVDLLAEKETGRSAAA---VLTELRTDLHRGQRFSD-AL 115 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 S+ G++ EA++ + ++ +V + S+ + Sbjct: 116 EHHPAVFPPMFVATVRASERTGDIQEAVSRFLAYHQQLDRIRRRVVSASVYPLMLMGVGL 175 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168 + + V + L + Sbjct: 176 LVTAFMLLFVVPKFSRIYEEIGGQLPFLTRLLIG 209 >gi|149177813|ref|ZP_01856412.1| general secretion pathway protein F-putative pilus protein [Planctomyces maris DSM 8797] gi|148843303|gb|EDL57667.1| general secretion pathway protein F-putative pilus protein [Planctomyces maris DSM 8797] Length = 345 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/166 (9%), Positives = 54/166 (32%), Gaps = 11/166 (6%) Query: 25 RSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSF 83 + +G+ + + + + ++ ++ G ++ ++ + Y P Sbjct: 20 TMLESGVSIVKSFQLAGKKLGDHRLQQSVNDIVMELKSGNDVTSALQKQGNYYP-----E 74 Query: 84 FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143 + ++ G L E L L+ + M+ + + + + + Sbjct: 75 LMVNMISVAEQSGGLPEVLKALAEHYDNLVQMRKNFLRMIAWPVFQFVVALLVIALMILI 134 Query: 144 VYFTSP-----GYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + + + + ++ P G M+ L + V+ +++ Sbjct: 135 LGLIAQGGAAIDVLGLGLSGPSGAMIWLTCTFGSLFALYVLYQILD 180 >gi|145636569|ref|ZP_01792237.1| protein transport protein [Haemophilus influenzae PittHH] gi|145270394|gb|EDK10329.1| protein transport protein [Haemophilus influenzae PittHH] Length = 406 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/162 (12%), Positives = 64/162 (39%), Gaps = 6/162 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71 + L+ + +++ +P+ +++ ++ + V +E+ R++++ GL+ S++I + Sbjct: 56 NSEISELLNQLATLLQSAIPLKNSLQILQQNCTQIVLNEWLERLLQSIESGLAFSQAIEQ 115 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 +Y+ QE + ++ G L+ ++ ++ K+Q + + Sbjct: 116 QGKYLTQQE-----IQLIQVGEMTGKLAVVCKKIATHRSQSLALQRKLQKIMLYPSMVLG 170 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 I L + + N + + ++ + L Sbjct: 171 ISLLLTLTLLLFIVPQFAEMYNGNNAELPTITAILLSISNFL 212 Score = 39.3 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 13/137 (9%), Positives = 44/137 (32%), Gaps = 4/137 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS--EFRRVIETQHLGLSLSESIS--R 71 N + ++AG+P++ A+ + ++ +I + + L Sbjct: 263 LVNFSQSLQIMLQAGVPLNQALDSFLPRTQTWQTKKTLVNDIILDKEVRSILQWVSQGYA 322 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + + G L+ L +++ +++ N + + + +E Sbjct: 323 FSNSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIADNYQEKLNHQIDLLSQMLEPLMMVI 382 Query: 132 IIGSLPFCVSTLVYFTS 148 I + + + Sbjct: 383 IGSLIGIIMMGMYLPIF 399 >gi|84496011|ref|ZP_00994865.1| putative integral membrane protein [Janibacter sp. HTCC2649] gi|84382779|gb|EAP98660.1| putative integral membrane protein [Janibacter sp. HTCC2649] Length = 302 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 22/160 (13%), Positives = 51/160 (31%), Gaps = 4/160 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ K+ A+F +D++ G A+ V + Sbjct: 146 VRDDAKRARAEFSRSLGAYIDLVALERNNGAGPRQAMEAAAAGGDSWVFRRLSEELARTR 205 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + E++ + + L E+ + ++ + + G + L S +R K Sbjct: 206 WSGLTPWEALRALGDELGLPELDDLADIMRLSGEEGAQVYAQLRARSAGMRTAMLNTEKA 265 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159 +A + + S + V L +P + V+ P Sbjct: 266 KANEIGERMSIPMS---LLGVIFLAILVAPALLRVMGGAP 302 >gi|325295626|ref|YP_004282140.1| type II secretion system F domain [Desulfurobacterium thermolithotrophum DSM 11699] gi|325066074|gb|ADY74081.1| Type II secretion system F domain [Desulfurobacterium thermolithotrophum DSM 11699] Length = 408 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/150 (12%), Positives = 48/150 (32%), Gaps = 7/150 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSL 65 +R + + R++ G+ V + + I S + R + E G SL Sbjct: 60 QRRKISKQELADFCFYFGRALDMGISVLEILEDIGKSSKNKYFRKVMETLRERVTAGSSL 119 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 SE++ + P + + L + N + L +++ +V+ Sbjct: 120 SEAMELTGAFPP------ELIGLVKVGESTDALPKVFLNYAEYLDWVISIEKEVKQALSY 173 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++I+ + + + + Sbjct: 174 PIFVSFIMVFTIAIMFGYIIPQIIPAITAM 203 Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 47/130 (36%), Gaps = 8/130 (6%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPV--RSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + R+G + A+ +I+ + +S F++V E +G LS ++ R Sbjct: 277 MRALAEVYRSGGTILRALDIIINHVEQNLYIKSIFQKVKENIMVGDMLSVAMERSG---- 332 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G L ++L L+ I D K + + +E + G L Sbjct: 333 --FFQSTIIRMIKLGEETGALDKSLLRLAEIYEDDMRRKIQTMTVVIEPTLQLVLGGILG 390 Query: 138 FCVSTLVYFT 147 ++ Sbjct: 391 IVALGILLPV 400 >gi|119719362|ref|YP_919857.1| type II secretion system protein [Thermofilum pendens Hrk 5] gi|119524482|gb|ABL77854.1| type II secretion system protein [Thermofilum pendens Hrk 5] Length = 604 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/168 (11%), Positives = 51/168 (30%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 L +V + G+ + + + R + + G+SL R Sbjct: 393 IQYGLTRFLRDLVEVRKTGMAPEKCIINLKDRDYGKFTPYLRDIAKQVGWGVSLHTIFER 452 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + M ++ ++GG + L L+ + ++ + +A + Sbjct: 453 FSKGMKNWFALISMFLLVESIEVGGGTPQTLEALASYAETLEQVEKEKRAALRPLMLMPY 512 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + V ++ + L+G+ ++I +M Sbjct: 513 VGALIITVVVLILVEFMGSMLKFAGTAISTEQLVGMFLPPVIINSYMM 560 >gi|218663023|ref|ZP_03518953.1| putative tadC pilus assembly protein [Rhizobium etli IE4771] Length = 145 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 62/144 (43%), Gaps = 4/144 (2%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDPVRS---EFRRVIETQHLGLSLSESISRMVRYMPL 78 +++ + AG+ + A + + D + ++ G L E+++ + + + Sbjct: 1 MLIVCLDAGMSIEAAANRVAREFVDKQQDFGLHLSIMMLEVRGGRRLREALANLATRLRI 60 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL-P 137 E + + +LG ++++ L S+ +RD + ++A+ +A ++ K + L P Sbjct: 61 DEARALAVLFRQSEELGTSVTQTLRVYSKEMRDLRIVRAEEKANALPVKMLLPLGAFLFP 120 Query: 138 FCVSTLVYFTSPGYMNVLINDPRG 161 + ++ +++LI G Sbjct: 121 VSLIIVLVPIVIRVVSLLIGLKPG 144 >gi|312898845|ref|ZP_07758233.1| type II secretion system F domain protein [Megasphaera micronuciformis F0359] gi|310620007|gb|EFQ03579.1| type II secretion system F domain protein [Megasphaera micronuciformis F0359] Length = 397 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/159 (8%), Positives = 50/159 (31%), Gaps = 13/159 (8%) Query: 26 SVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 ++AG+P+++A +I + + + + ++ + Sbjct: 71 LLKAGIPLTEAWHLISRRLKNRRKRQAVE-----GCITAMESGKRAAESMQDSGAFPQTA 125 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 + + G++ + L+ + +++++ + + ++ + + Sbjct: 126 CSLVQAGEHSGHMEDMTELLASYYERLCDERSQLRNMMIYPT---FLFVCINILFFGALV 182 Query: 146 FTSPGYMNVLINDPR-----GHMLLGVAAAFMLIGIMVM 179 F P + ++ MLL G ++ Sbjct: 183 FVIPVFSDLFAETGVPLPQSTRMLLAAGNFLYRYGPFLI 221 >gi|295094185|emb|CBK83276.1| Bacterial type II secretion system protein F domain. [Coprococcus sp. ART55/1] Length = 443 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 60/164 (36%), Gaps = 12/164 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP----------VRS 50 ++ + KKR+ + + ++P +D + + AG+ V A A IV + + Sbjct: 282 IQGMEKKRSDELMSEYPELVDKLTLYLGAGVTVRGAFARIVKSGREDCAGTDQGGSVLTR 341 Query: 51 EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 E + G+S SE+ M + L +++S + L ++ + Sbjct: 342 ELIYTLNEIQAGVSESEAYYNMGHRINLPMYIKLMSLLSQNV--KKGTRDILIMMAGEEQ 399 Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + ++ E + ++ + +V P +N Sbjct: 400 NAMQTRKEMAKRKGEEAGTKLLLPMVVLLGVVMVIVMLPAIINF 443 >gi|325983461|ref|YP_004295863.1| Type II secretion system F domain [Nitrosomonas sp. AL212] gi|325532980|gb|ADZ27701.1| Type II secretion system F domain [Nitrosomonas sp. AL212] Length = 394 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 54/153 (35%), Gaps = 6/153 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + ++ AGL + +++ ++ + R + +++ + G++ S+++ + Sbjct: 58 LVHFSQELLSLQTAGLSLVESIETLLEKEQDASNRKIIQNILDRLYEGITFSQALEDYPQ 117 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 P S+ G+L+EAL ++ K+ S+ + Sbjct: 118 AFPP-----LYIATVRASERTGDLAEALTRFITYQTQMDFVRKKLVGASIYPVLLLVVGL 172 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 + + V + + +D LL + Sbjct: 173 LVSIFLMVFVVPKFSAIYDDMGSDLPWLSLLLI 205 >gi|237653196|ref|YP_002889510.1| general secretion pathway protein F [Thauera sp. MZ1T] gi|237624443|gb|ACR01133.1| general secretion pathway protein F [Thauera sp. MZ1T] Length = 410 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/171 (12%), Positives = 51/171 (29%), Gaps = 6/171 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLG 62 ++ R +++ + AGL V A++ ++ Q+ + V + G Sbjct: 61 RVQARRRLPVNELALLSRQWATLLAAGLTVEHALSALIEQAESERVHDTLAAIRSDVVSG 120 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 SL ++ R P + G L+ + L+ L +++ K Sbjct: 121 HSLRIALDRHSGAFPP-----IYRAAIAAGEQSGELAAVMNQLADHLERGADLQRKTMQA 175 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + A + + + V G + + + + Sbjct: 176 LIYPALVAMVALLVVTGLMVFVVPQVVGVFAQSKQALPLLTRIMIGVSNFI 226 >gi|327490355|gb|EGF22141.1| bacterial type II secretion system protein F [Streptococcus sanguinis SK1058] Length = 408 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/162 (10%), Positives = 45/162 (27%), Gaps = 7/162 (4%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 L D + + +G+P+++AV ++ Q++ +++ S Sbjct: 57 KKIKLKDISLFCKQMSVMLESGIPLNNAVDILEQQATSKNLKSSLKIVSKSLKEGS---- 112 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + G L E L +S +++ + Sbjct: 113 QLSKAMLDQEGMFPDLLIRMVQAGEKTGKLDEVLEKMSEHYNKELKTSRQIRGAMIYPAV 172 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 A++ + + +V P + + L Sbjct: 173 LAFLAVAAVLALLYVVI---PSFSGIFEQSGMAMPLPTRIVL 211 Score = 45.5 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ +A+ +++ V E ++ L + Sbjct: 270 FASTLAILTSAGIPLVEAIESAAATTNNAVVIEKMKIANE-----GLQKGERLTGMITST 324 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G+L L S + K +E + + Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLVKTSDYYEEELETAIKQLLSLLEPAMIIVMGVIIGG 384 Query: 139 CVSTLVYFTS 148 V++++ Sbjct: 385 IVASVMLPMF 394 >gi|283778971|ref|YP_003369726.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283437424|gb|ADB15866.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 309 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 5/159 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIET 58 + +KR D P L+++ AGL A+ I + P+ SEFR Sbjct: 141 VNRSRQKRVEMIEQDLPLTLELLATLSEAGLGFDAAMQRIQSTRLAVRPLASEFRSYQAD 200 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G ++S+ R+ + + +S F + + QLG +++ L + +RDR+ +A Sbjct: 201 LLAGRPRTQSLRRLSSRIQVPAISIFVSALVQAEQLGMGIAQVLRRQADDMRDRRRERA- 259 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + +I + + L +T + L Sbjct: 260 --NAFAMSLTVKRVIPLVVCFLPGLFVWTLGPFFVQLFQ 296 >gi|160937867|ref|ZP_02085225.1| hypothetical protein CLOBOL_02759 [Clostridium bolteae ATCC BAA-613] gi|158439093|gb|EDP16847.1| hypothetical protein CLOBOL_02759 [Clostridium bolteae ATCC BAA-613] Length = 352 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/165 (10%), Positives = 49/165 (29%), Gaps = 10/165 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 ++ I + A +P+ + +A++ ++ + + Sbjct: 14 EELSAFCLQISLLLEAAVPLEEGLAIMAEDAASQGEKDMLLYMAEGVELGDP-----FFK 68 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + ++ Q G + + + +LS + ++ ++ Sbjct: 69 VMEDTGVFPAYVVRMAKLGQQTGTMDQMMKSLSDYYEKEYRLLRAIKNAVTYPVMMVVML 128 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + F + + V L G + VAA+ M +G + Sbjct: 129 LVVLFVLFSKVMPVFNKVYEQL-----GAQMPPVAASAMRLGGWL 168 >gi|302669442|ref|YP_003829402.1| Flp pilus assembly protein TadC [Butyrivibrio proteoclasticus B316] gi|302393915|gb|ADL32820.1| Flp pilus assembly protein TadC [Butyrivibrio proteoclasticus B316] Length = 486 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 10/137 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---------QSSDPVRSE 51 + I+KR L D+P + +V + AG+ + + + + Q E Sbjct: 326 LAKQIEKRNEGLLKDYPGLVSQMVLYLGAGMTMRNIIGKLSENYVAKLKAGQEKSFAYEE 385 Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILR 110 R G S S++ Q+ + ST++S + L L +R + Sbjct: 386 LLRTTRELAAGKSESDAYEEFGYRCGGQQYTRLSTLLSQNLRKGNSELLRLLNEEARKSQ 445 Query: 111 DRKNMKAKVQALSMEAK 127 + + +A+ K Sbjct: 446 EDRLDRARKAGEEAGTK 462 >gi|83858598|ref|ZP_00952120.1| General secretion pathway protein F [Oceanicaulis alexandrii HTCC2633] gi|83853421|gb|EAP91273.1| General secretion pathway protein F [Oceanicaulis alexandrii HTCC2633] Length = 399 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/174 (12%), Positives = 59/174 (33%), Gaps = 8/174 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQ 59 ++ L R + + +D + +AG+P+ A+ V+ G++ + V R + + Sbjct: 49 LRFLDSARPGRLE--LADFMDDLAALHKAGVPLRRALDVLSGEAVTPRVARLARLMADRL 106 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G LS + + ++ +L G L L +++LR + ++ Sbjct: 107 DAGAELS-----AAARVDDANDIQLAAELAKAGELSGELELTLRAGAKVLRSQAEFVKRL 161 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 ++ + +S + + N + + + + Sbjct: 162 RSAMAYPSFLLVLSLFAVIALSLVAGPALEPLLAETTNGKADGLRMVLGFGAFV 215 >gi|221069114|ref|ZP_03545219.1| general secretion pathway protein F [Comamonas testosteroni KF-1] gi|220714137|gb|EED69505.1| general secretion pathway protein F [Comamonas testosteroni KF-1] Length = 407 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 58/170 (34%), Gaps = 14/170 (8%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVR 74 + V +GLP+ A+A + ++ D + + G S + ++ + R Sbjct: 70 LAVWTRQLSGLVSSGLPIERALAALAEEAEDERQHQLVAALRAEVNAGSSFARALEQHPR 129 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 E S + + G+L L NL+ L R+ +++K+ S+ + Sbjct: 130 -----EFSDIFCAVIGAGESSGSLGPVLENLADDLEARQALQSKLIGASLYPA---IVTL 181 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-----IGIMVM 179 V LV + P V R L V + G ++ Sbjct: 182 VAIVIVVFLVSYVVPQVAGVFAGTKRALPFLTVVMLGISDFVRHYGWFML 231 Score = 35.5 bits (80), Expect = 3.1, Method: Composition-based stats. Identities = 15/129 (11%), Positives = 33/129 (25%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ A+ ++ R L L + Sbjct: 276 FAGTLAMLAGAGVPILKALQAAAETLNNR----ALRADAMDALVLVREGAPLASALAQKK 331 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + + G L L + L +A A +E + + Sbjct: 332 R-FPGLVAMFARLGEQTGQLPLMLQRAATQLSTEVQRRAMHLATILEPLLIVVMGLVVML 390 Query: 139 CVSTLVYFT 147 V ++ Sbjct: 391 IVLAVLMPI 399 >gi|30025011|gb|AAO61482.1| unknown [Legionella pneumophila] Length = 113 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 12/109 (11%), Positives = 26/109 (23%), Gaps = 4/109 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + ++ D + + AG+PV +++ + Q+ E + Sbjct: 9 QRAASSKSKVSAADLALLTRQLATLLAAGIPVEESLRGVSEQTEKDKVRELIIGVR---- 64 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 L + G L L L+ Sbjct: 65 SKVLEGYGLAQAMAQYPNAFPELYRATVGSGEQTGRLDVVLEKLADYTE 113 >gi|167618601|ref|ZP_02387232.1| type IV pilus biogenesis protein PilC [Burkholderia thailandensis Bt4] gi|257137852|ref|ZP_05586114.1| type IV pilus biogenesis protein PilC [Burkholderia thailandensis E264] Length = 387 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 45/153 (29%), Gaps = 6/153 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AGL ++ ++ ++ + + + + G S ++ R R Sbjct: 53 FARQLAGLLHAGLALAPSLELLAQATRRNEMPRIAAGLAREIVAGRQFSAALRRYPRQFD 112 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 F + + G L+ LA L+ A+V+ A + ++ Sbjct: 113 P-----FFCQLVAVGETAGALAAVLARLADDRERAAAQYARVRGALAYPVAVLLVALAIT 167 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + V T +A + Sbjct: 168 AALLIWVVPTFEQIFAGFGAALPAPTRFVLALS 200 >gi|300696695|ref|YP_003747356.1| general secretion pathway protein F [Ralstonia solanacearum CFBP2957] gi|299073419|emb|CBJ52933.1| General secretion pathway protein F [Ralstonia solanacearum CFBP2957] Length = 395 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 8/147 (5%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLS 66 R F ++ + AGL V +A+ + + RS V+ G LS Sbjct: 53 RRHDFSLLL--FSQELLTLLEAGLSVFEALETLHEKEKRPFARSVLASVLARLSEGKPLS 110 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + M P T I ++ NL ++L+ ++AK+ + S+ Sbjct: 111 TAFGEMPELFP-----ALYTSIIRTAERTSNLPQSLSRYVEYQTRLDGVRAKIASASIYP 165 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMN 153 A + ++ + V Sbjct: 166 MVLAVVGAAVMLFLLGYVVPRFAVVYQ 192 >gi|330823243|ref|YP_004386546.1| type II secretion system F domain-containing protein [Alicycliphilus denitrificans K601] gi|329308615|gb|AEB83030.1| Type II secretion system F domain protein [Alicycliphilus denitrificans K601] Length = 403 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 52/161 (32%), Gaps = 6/161 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMP 77 + +A +P+ A+A++ + + F V E G SL +S+ R Sbjct: 70 FTREMAHLKQANMPLDKALAMLRETAGNERIKAFLASVQEEVRGGKSLYQSLQPFER--- 126 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ V+ + G+L L L+ L ++ + + + Sbjct: 127 --DLGRQYLVLIRAGEASGSLHTILQELTTQLEADDKLRNYIISSMTYPAILLVVAVLSV 184 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + V + + + L + A+ + G + Sbjct: 185 ILLLAFVVPQFRQIFDSMGDALPYSTQLVLQASDFVRGHWM 225 >gi|220927958|ref|YP_002504867.1| hypothetical protein Ccel_0505 [Clostridium cellulolyticum H10] gi|219998286|gb|ACL74887.1| hypothetical protein Ccel_0505 [Clostridium cellulolyticum H10] Length = 241 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 20/41 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV 41 + IKKR + FP+ ++ + + AGL +S A I Sbjct: 137 LSRKIKKRHLEIQLSFPDFINKLALMLNAGLTMSKAWEKIS 177 >gi|82703704|ref|YP_413270.1| type II secretion system protein [Nitrosospira multiformis ATCC 25196] gi|82411769|gb|ABB75878.1| type II secretion system protein [Nitrosospira multiformis ATCC 25196] Length = 394 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 20/153 (13%), Positives = 50/153 (32%), Gaps = 6/153 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + ++ + AGL + +++ + + + R ++ + G++LS ++ + Sbjct: 58 LAHFSQELLSLLVAGLSLVESIETLADKEQDNGTRKIIEGLLARLYEGVTLSRALESFPQ 117 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 P + S+ G+L EAL ++ K+ S+ I Sbjct: 118 AFPP-----LYIATARASERTGDLPEALTRFIAYQTQMDLVRKKLIGASIYPVLLLIIGL 172 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 + + V D +L + Sbjct: 173 LVAIFLLIFVVPKFSAIYEDTGADLPFLSVLLI 205 >gi|160935909|ref|ZP_02083283.1| hypothetical protein CLOBOL_00802 [Clostridium bolteae ATCC BAA-613] gi|158441151|gb|EDP18868.1| hypothetical protein CLOBOL_00802 [Clostridium bolteae ATCC BAA-613] Length = 426 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 20/161 (12%), Positives = 45/161 (27%), Gaps = 11/161 (6%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV----------GQSSDPVRSE 51 ++ ++R + D+P L + + AG+ + A I + V E Sbjct: 265 QNRTEERKRQLALDYPEVLSRLTIFLGAGMSIRTAWDKIALEYKMMVEQGRRRKRYVYEE 324 Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQS-QLGGNLSEALANLSRILR 110 G+ ++ R LQ ++ NL L Sbjct: 325 MYETSCQMKGGVPEGKAFEEFGRRCGLQSYMKLGGLLEQNRKNGSKNLRNLLRTEMTDAF 384 Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 +++ +A+ K + L + + + Sbjct: 385 EQRKHQARRLGEEAGTKLLLPLFILLSVVMVMIAVPALMEF 425 >gi|134096981|ref|YP_001102642.1| type II secretion system protein [Saccharopolyspora erythraea NRRL 2338] gi|291006274|ref|ZP_06564247.1| type II secretion system protein [Saccharopolyspora erythraea NRRL 2338] gi|133909604|emb|CAL99716.1| type II secretion system protein [Saccharopolyspora erythraea NRRL 2338] Length = 267 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 65/188 (34%), Gaps = 6/188 (3%) Query: 2 KHLIKKRTA-----KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI 56 + ++ R + + + + ++V +RAG + A S+ + FR + Sbjct: 74 RRYVRSRRSFRVGVERSAELSGGIRLLVAGLRAGAHPAVAAEGAAADSAPAISGVFRDLA 133 Query: 57 ETQHLGLSLSESISRMVRYMP-LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 LG + + Q ++ + + G L++ L + R + R Sbjct: 134 SAAKLGGDIPTVLDNGGHPAELRQPLARLGRAWRLAERHGVALADLLDAVRRDVDHRVAF 193 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 +++ +A+A ++ LP L + VL G +L V A + G Sbjct: 194 IRDLESKMAGPRATAAMLAGLPLLGLLLGEAVGAAPLAVLTGQAFGQAVLVVGVALLCAG 253 Query: 176 IMVMRLMI 183 + + Sbjct: 254 LFWTLRLT 261 >gi|194366101|ref|YP_002028711.1| type II secretion system protein [Stenotrophomonas maltophilia R551-3] gi|194348905|gb|ACF52028.1| type II secretion system protein [Stenotrophomonas maltophilia R551-3] Length = 311 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 56/147 (38%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 + +K+R + P +D++ G + ++ + + + E + Sbjct: 147 LSSWVKRRRRAVDKELPLLIDLLRLLQGVGFSMDQSLQTLGDKLRDALPVLGGELQEANV 206 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++S+ R+ ++S +I GG + E L S LR+++ Sbjct: 207 AYTHGRTRAQSLRRLSEVYADDDLSSLMQLILQVHAHGGAVQEPLRQFSIRLREQRRNTL 266 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 K + + K + ++ +L + ++ Sbjct: 267 KEKVGKLSVKMTVVMMLTLLPALMLVL 293 >gi|288930963|ref|YP_003435023.1| type II secretion system F domain protein [Ferroglobus placidus DSM 10642] gi|288893211|gb|ADC64748.1| Type II secretion system F domain protein [Ferroglobus placidus DSM 10642] Length = 635 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 50/148 (33%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 K P + ++ AG + A + ++ P+ + E G+S + Sbjct: 413 EKLSAQLPLYFNRVLSLAEAGKDTTTAFKLAAEEARPPLSKYVKVFAEMLDRGISRDRAF 472 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + R P ++ + ++S + G +++ L +L L + + +++ Sbjct: 473 QWLFRITPSTDLRLAARILSKTVDVSGRVTQVLISLVGELMRLNAFRKERDSVAKTYGGM 532 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + L ++ + G L Sbjct: 533 MVLAALLFLGIAVAISAMLLGQFEKLGQ 560 Score = 35.9 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 60/180 (33%), Gaps = 6/180 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K I R + ++ +AG+ + +AV +V + EF R+ Sbjct: 164 LKGKISSRREDIDFNLHTLYITLLGFAKAGISIMEAVKELVTMDLGEISKEFARIYYAVR 223 Query: 61 L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 +L ++ + P +++ I + GG+L + L + + Sbjct: 224 YGNTTLKAAMLEVAATTPSAKLADLLRGIVGVMEAGGDLGRYMEERIESLEVERKIMYTE 283 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGY-----MNVLINDPRGHMLLGVAAAFMLI 174 +E A ++ SL + + ++++ G M L A + + Sbjct: 284 YLKKLEMIAEVYLTVSLAIPTMVVSIQLAKSIAGQADISMVYGLVYGFMPLSSLALIIAL 343 >gi|110833084|ref|YP_691943.1| hypothetical protein ABO_0223 [Alcanivorax borkumensis SK2] gi|110646195|emb|CAL15671.1| conserved hypothetical protein [Alcanivorax borkumensis SK2] Length = 286 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS---LSESISRMVR 74 ++ + AGL + A V QS + R+ L S ++ + Sbjct: 143 EFAQLLSMLLEAGLSIERAFRVAAVQSRPMIPGLVHRLDRFNRLMESGAERGVALDEIGE 202 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + ++ LGG +SE++ L +D + + K + + AK + ++ Sbjct: 203 GKQIPVLHSLTRLLKQGGALGGAISESIEQLILEAQDVEKSRIKEEVNRVGAKMTVAMMI 262 Query: 135 SLPFCVSTLV 144 + + +V Sbjct: 263 FMMPALFIIV 272 >gi|255505483|ref|ZP_05346368.3| putative bacterial type II secretion system protein F domain protein [Bryantella formatexigens DSM 14469] gi|255267486|gb|EET60691.1| putative bacterial type II secretion system protein F domain protein [Bryantella formatexigens DSM 14469] Length = 490 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 44/127 (34%), Gaps = 9/127 (7%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-----GQSSDPVR--SEFRR 54 + + R + L D+P+ L + + AGL + +A I ++ + E Sbjct: 333 QQAQEHRRRQMLMDYPDLLFKLSMLLNAGLTMQNAFFKIALEYRDRETPEVRFAYEEMLT 392 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL--ANLSRILRDR 112 G+ + S R + + T++S Q G L + + +R Sbjct: 393 SYYEMQSGVPEARSYENFGRRCGVGSYNKLGTMLSANLQKGSQGLAKLLQEEAAFSMEER 452 Query: 113 KNMKAKV 119 M K+ Sbjct: 453 SQMARKL 459 >gi|213582180|ref|ZP_03364006.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 105 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/103 (14%), Positives = 36/103 (34%), Gaps = 6/103 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q R + G+ S ++ Sbjct: 8 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 67 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 + P + +L G L+E L+R + ++ Sbjct: 68 WPQVFPP-----LYQTMIRTGELTGKLAECCFELARQQKAQRQ 105 >gi|118431778|ref|NP_148457.2| hypothetical protein APE_2206.1 [Aeropyrum pernix K1] gi|116063100|dbj|BAA81218.2| hypothetical protein [Aeropyrum pernix K1] Length = 284 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 68/192 (35%), Gaps = 10/192 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 + + N L I + + GL ++ + + P+ RR+ + LG+S Sbjct: 61 VTRANKGIGLAMSNFLRDIAETRKTGLSPEQSIISLSARDYGPLTKVVRRIATSLQLGMS 120 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRI----LRDRKNMKAKVQ 120 L +S+ R VR + + +GG E L L+R + + + + + Sbjct: 121 LEDSVRRSVRRIKDWASLSALRFLVDSISVGGGSPEVLDALARYTYGLVSIQDEFRKRTR 180 Query: 121 ALSMEAKASAWIIGSLPFCVSTL----VYFTSPGYMNVLINDP--RGHMLLGVAAAFMLI 174 + A I+ + + + +PG ++ P G + L +A ML Sbjct: 181 IYIIMPYLGAIIVAASTLVMLGYTIKTLQVVNPGGETSVVAVPENIGVVGLILAIGVMLN 240 Query: 175 GIMVMRLMINFD 186 M+ + Sbjct: 241 SWMMGLMAGKIR 252 >gi|145294433|ref|YP_001137254.1| hypothetical protein cgR_0388 [Corynebacterium glutamicum R] gi|140844353|dbj|BAF53352.1| hypothetical protein [Corynebacterium glutamicum R] Length = 258 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 61/183 (33%), Gaps = 7/183 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--PVRSEFRRVIETQH 60 H +RT + + L + ++RAG+ + DA+ + ++ + + Sbjct: 75 HAAAQRTKQ-SLQLASFLSLCAGNLRAGVTMVDAMDYALDNTTPDKFLSPTLQTAARQAR 133 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S + ++ + + G L + + + ++ + Sbjct: 134 SGGSGPRVLIDASL----PDLQRLGHLWETSERHGIPLVALIDQMRSRISSKQRHGESTR 189 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A +A+A I+ LP + + +L G +LL + G +V Sbjct: 190 AALQGPQATAVILTVLPLAGLLMGTAMGANPLGILTGGGIGGLLLVIGVGLDAAGFVVTH 249 Query: 181 LMI 183 ++ Sbjct: 250 KIL 252 >gi|207739025|ref|YP_002257418.1| general secretion pathway gspf-related protein [Ralstonia solanacearum IPO1609] gi|206592396|emb|CAQ59302.1| general secretion pathway gspf-related protein [Ralstonia solanacearum IPO1609] Length = 407 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 72/188 (38%), Gaps = 15/188 (7%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 IK R K + +RAGL VS+A+ + + P +RR+ + GL Sbjct: 62 KIKNRRRKVDAGL--VCIELGGLLRAGLTVSEALDSLAHRDDHPNVDVYRRLYDGLLSGL 119 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 LSE++ ++ P ++ G + +AL ++ + ++ ++ KV + + Sbjct: 120 PLSEAMKQVEGIFPG-----ILVAAIQANERSGRIPDALDEYAKYAQAQEALRKKVVSAA 174 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMN--VLINDPRGHMLLGVAAAF------MLIG 175 + + + V + + +LL V +L+G Sbjct: 175 VYPATVIGFGLLVVLFLLAYVIPRFAMVYDGTAMQMSGPTRILLAVGHFIHEQGWGLLVG 234 Query: 176 IMVMRLMI 183 I+++ +++ Sbjct: 235 IVLLGVIV 242 Score = 35.5 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 33/129 (25%), Gaps = 5/129 (3%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + R G +A+ + S RV L + M Sbjct: 278 CASLAMLTRGGYDFPEAMRLAS----PLAISASTRVQLDAARERILEGVLVSHA-LMQTD 332 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 F+ I + G+L+ + L++ R + +E + + Sbjct: 333 FSDGFAVRILQAGERVGDLAGSFDMLAQTYRRELETMLERTMRLVEPILLMTVASLIGAI 392 Query: 140 VSTLVYFTS 148 V + Sbjct: 393 VVLMYLPIF 401 >gi|149174857|ref|ZP_01853481.1| type II secretion system protein [Planctomyces maris DSM 8797] gi|148846194|gb|EDL60533.1| type II secretion system protein [Planctomyces maris DSM 8797] Length = 420 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/161 (9%), Positives = 48/161 (29%), Gaps = 13/161 (8%) Query: 30 GLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVI 88 G+P+S + + +++ + F+ + G+ S R ++ +P + Sbjct: 97 GIPLSACLLTLAEETNSRQLSRIFQNIANDLEQGVIPEHSFDRHLKSIPH-----HLESL 151 Query: 89 SVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 + +L + + R K + K+ + + L + + V Sbjct: 152 ILAGAQTKHLESIIEDYIECQRYLKQSRHKILISLFYSGVLIAVSFLLFYFLMVKVVANF 211 Query: 149 PGYMNVLINDPRGHMLLGVAA-------AFMLIGIMVMRLM 182 + +L ++G ++ + Sbjct: 212 KSIFEGFGTELPSLTVLAFHISDVFSEYGLQMLGWFLLISI 252 >gi|146310314|ref|YP_001175388.1| type IV pilin biogenesis protein [Enterobacter sp. 638] gi|145317190|gb|ABP59337.1| type II secretion system protein [Enterobacter sp. 638] Length = 398 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 51/156 (32%), Gaps = 4/156 (2%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + ++AGL ++ ++ ++ Q +++ ++ LS + S ++ P Sbjct: 61 EIFRQLATLLQAGLTLAYSLQMLAEQHP---VKQWQALLNNLADDLSEGCAFSDALKKWP 117 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 S + +L G L E L++ + ++ + AKV+ + + Sbjct: 118 -DVFSPLYVSMMKTGELTGKLEECCRQLAQQQKLQQQLSAKVKKALRYPMIILALAVVVV 176 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + T V + A + Sbjct: 177 LAMVTFVLPEFAAIYKTFNTPLPMLTQWVMGFATFV 212 >gi|163857687|ref|YP_001631985.1| putative Flp pilus assembly protein [Bordetella petrii DSM 12804] gi|163261415|emb|CAP43717.1| putative Flp pilus assembly protein [Bordetella petrii] Length = 332 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR---SEFRRVIE 57 + +K R + + P +D++ GL V +++VIV + + EF Sbjct: 167 LVRRVKARKKQAGKELPLLVDLLRLLQGVGLSVDQSLSVIVNDFTPVLPVLGHEFGVSTA 226 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S++R+ + +++ ++ + GG + E L ++ +RD++ + Sbjct: 227 VYARGRTREQSLARLSQGFDDDDLAAICRLLVQVDRHGGAVQEPLNRFAQRIRDKRRFEL 286 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 K + + K + +I +L + + Sbjct: 287 KEKIGRLTVKMTGVMIVTLLPALLIV 312 >gi|33152246|ref|NP_873599.1| pili/fimbriae biogenesis protein [Haemophilus ducreyi 35000HP] gi|33148468|gb|AAP95988.1| protein transport protein HofC-like protein [Haemophilus ducreyi 35000HP] Length = 397 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/175 (11%), Positives = 57/175 (32%), Gaps = 15/175 (8%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71 + ++ + + A +P+ ++ +++ + + +I G + S S+++ Sbjct: 57 SEQITQLINQLAMLLNASVPLKQSLVMVLENVHNIKLYLWLSEIIMLLEAGHAFSASLTK 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M Y+ QE + + G L+ L N++++ + + KV+ + Sbjct: 117 MNVYLTKQE-----IQLIQMGEQSGRLAIMLDNIAQVRNQSQKLANKVKKIMFYPAIILA 171 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG---------VAAAFMLIGIM 177 + S+ + + L A + G+ Sbjct: 172 VSISVLIGLLLFIVPQFEDLYRNKDQSLPFITQLLFQLSNFLQQYAFILFIGGLF 226 >gi|325698100|gb|EGD39981.1| bacterial type II secretion system protein F [Streptococcus sanguinis SK160] Length = 408 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/162 (11%), Positives = 45/162 (27%), Gaps = 7/162 (4%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 L D + + +G+P+++AV ++ Q++ +++ S Sbjct: 57 KKIKLKDISLFCKQMSVMLESGIPLNNAVDILEQQATSKNLKSSLKIVSKSLKEGS---- 112 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + G L E L +S ++Q + Sbjct: 113 QLSKAMLDQEGMFPDLLIRMVQAGEKTGKLDEVLEKMSEHYTKELKTSRQIQGAMIYPAV 172 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 A++ + + +V P + + L Sbjct: 173 LAFLAVAAVLALLYVVI---PSFSGIFEQSGMAMPLPTRIVL 211 Score = 45.9 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ +A+ +++ V E ++ L + Sbjct: 270 FASTLAILTSAGIPLVEAIESAAATTNNAVVIEKMKIANE-----GLQKGERLTGMITST 324 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G+L L S + K +E + + Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLVKTSDYYEEELETAIKQLLSLLEPAMIIVMGVIIGG 384 Query: 139 CVSTLVYFTS 148 V++++ Sbjct: 385 IVASVMLPMF 394 >gi|257388194|ref|YP_003177967.1| type II secretion system protein [Halomicrobium mukohataei DSM 12286] gi|257170501|gb|ACV48260.1| type II secretion system protein [Halomicrobium mukohataei DSM 12286] Length = 679 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 21/179 (11%), Positives = 53/179 (29%), Gaps = 7/179 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQH 60 R + +++ + GL + + + + EF+ ++ Sbjct: 142 FRANAREREVNVLLSDSISFMYALSVGGLNQLEILQAMAKADDTYGECAKEFQSIVLETE 201 Query: 61 LG-LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 +I P E+S F T + GG+++ L + + + Sbjct: 202 YFDTDYRTAIRNQALETPSDELSQFLTDMLSIINSGGDMTSFLEDQKDKHMRTAKQEQQK 261 Query: 120 QALSMEAKASAWII----GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 ++E ++ L + ++ +L G + L A +L+ Sbjct: 262 MLDTLELFGEMYMTLSLFPLLLIIILVIMSMMGDAQNRLLYGTVYGLIPLTGAGFLVLV 320 >gi|207725097|ref|YP_002255494.1| general secretion pathway gspf-related protein [Ralstonia solanacearum MolK2] gi|206590327|emb|CAQ37288.1| general secretion pathway gspf-related protein [Ralstonia solanacearum MolK2] Length = 391 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 8/147 (5%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLS 66 R F ++ + AGL V +A+ + + RS V+ G LS Sbjct: 49 RRHDFSLLL--FSQELLTLLEAGLSVFEALETLHEKEKRPFARSVLASVLARLSEGKPLS 106 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + M P T I ++ NL ++L+ ++AK+ + S+ Sbjct: 107 TAFGEMPELFP-----ALYTSIIRTAERTSNLPQSLSRYVEYQTRLDGVRAKIASASIYP 161 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMN 153 A + ++ + V Sbjct: 162 MVLAVVGAAVMLFLLGYVVPRFAVVYQ 188 >gi|256393178|ref|YP_003114742.1| type II secretion system protein [Catenulispora acidiphila DSM 44928] gi|256359404|gb|ACU72901.1| type II secretion system protein [Catenulispora acidiphila DSM 44928] Length = 297 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 59/156 (37%), Gaps = 1/156 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +R + LD++ S+ AG V A+ + R+ + T Sbjct: 142 IRAEAAERRKDMVRALSAFLDLVTLSLAAGGGVEAALKEASLVGDGWAFTALRKALATAE 201 Query: 61 -LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 ++ +++ ++ + + + + +++ G + +L+ + LR +A+ Sbjct: 202 ISRVAPWQTLGQLGAELDVPALGELAASLALAGSEGAKVRASLSAKAATLRANGLAEAQG 261 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 +A + + S ++ + + Y MN L Sbjct: 262 EANAASERMSLPVVVMGLGFMLLIGYPAMAHVMNGL 297 >gi|323350762|ref|ZP_08086422.1| bacterial type II secretion system protein F [Streptococcus sanguinis VMC66] gi|322123042|gb|EFX94741.1| bacterial type II secretion system protein F [Streptococcus sanguinis VMC66] Length = 408 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/162 (11%), Positives = 45/162 (27%), Gaps = 7/162 (4%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 L D + + +G+P+++AV ++ Q++ +++ S Sbjct: 57 KKIKLKDISLFCKQMSVMLESGIPLNNAVDILEQQATSKNLKSSLKIVSKSLKEGS---- 112 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + G L E L +S ++Q + Sbjct: 113 QLSKAMLDQEGMFPDLLIRMVQAGEKTGKLDEVLEKMSEHYTKELKTSRQIQGAMIYPAV 172 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 A++ + + +V P + + L Sbjct: 173 LAFLAVAAVLALLYVVI---PSFSGIFEQSGMAMPLPTRIVL 211 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ +A+ +++ V E ++ L + Sbjct: 270 FASTLAILTSAGIPLVEAIESAAATTNNAVVIEKMKIANE-----GLQKGERLTGMITST 324 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G+L L S + K +E + + Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLVKTSDYYEEELETAIKQLLSLLEPAMIIVMGVIIGG 384 Query: 139 CVSTLVYFTS 148 V++++ Sbjct: 385 IVASVMLPMF 394 >gi|327458557|gb|EGF04907.1| bacterial type II secretion system protein F [Streptococcus sanguinis SK1] Length = 408 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/162 (11%), Positives = 45/162 (27%), Gaps = 7/162 (4%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 L D + + +G+P+++AV ++ Q++ +++ S Sbjct: 57 KKIKLKDISLFCKQMSVMLESGIPLNNAVDILEQQATSKNLKSSLKIVSKSLKEGS---- 112 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + G L E L +S ++Q + Sbjct: 113 QLSKAMLDQEGMFPDLLIRMVQAGEKTGKLDEVLEKMSEHYTKELKTSRQIQGAMIYPAV 172 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 A++ + + +V P + + L Sbjct: 173 LAFLAVAAVLALLYVVI---PSFSGIFEQSGMAMPLPTRIVL 211 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ +A+ +++ V E ++ L + Sbjct: 270 FASTLAILTSAGIPLVEAIESAAATTNNAVVIEKMKIANE-----GLQKGERLTGMITST 324 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G+L L S + K +E + + Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLVKTSDYYEEELETAIKQLLSLLEPAMIIVMGVIIGG 384 Query: 139 CVSTLVYFTS 148 V++++ Sbjct: 385 IVASVMLPMF 394 >gi|309790163|ref|ZP_07684735.1| hypothetical protein OSCT_0686 [Oscillochloris trichoides DG6] gi|308227748|gb|EFO81404.1| hypothetical protein OSCT_0686 [Oscillochloris trichoides DG6] Length = 309 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 24/192 (12%), Positives = 61/192 (31%), Gaps = 11/192 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59 + + + D A+ + +++G A+ I+ P+R E+ ++ Q Sbjct: 112 LAYAKARYIHALDRDLTTAVGRLSALLKSGSGFRSAIERIIRDMPTCPLRDEWAFLLTRQ 171 Query: 60 HLG---LSLSESISRMVRYMPLQEVSFFSTVI----SVQSQLGGNLSEALANLSRILRDR 112 S++ + +T++ Q L+ ++D Sbjct: 172 GANLATGSIATPQQVVAALSLQTLSPRHATLLSHLSVAVGQPQDVLARRCEAAYSAIQDS 231 Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH---MLLGVAA 169 + + + + S +G ++ + T + + P G +L+ A Sbjct: 232 DRRREEAATELAQMRYSGIAVGLAGVLMAIYLTATQWERVLIAYQTPLGIIVGILVISAL 291 Query: 170 AFMLIGIMVMRL 181 +IG V+ Sbjct: 292 LLPIIGGFVLAR 303 >gi|171320758|ref|ZP_02909768.1| type II secretion system protein [Burkholderia ambifaria MEX-5] gi|171093996|gb|EDT39104.1| type II secretion system protein [Burkholderia ambifaria MEX-5] Length = 394 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 23/176 (13%), Positives = 55/176 (31%), Gaps = 12/176 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQHLGLSLSESISRM 72 L + + AGL + +A+ + ++ + R++ G LS ++++ Sbjct: 57 ALALFLQELSTLLDAGLVLIEALEALRDKADSGKDAKRVIDRILAVMTEGRPLSAALAQQ 116 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P S+ G L L + + ++ +V + + Sbjct: 117 PALFPP-----LLVATIESSEGSGQLPVVLKRYQQYEVRIEQVRKRVTGALIYPAVVIGV 171 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR-GHMLLGVAAAF----MLIGIMVMRLMI 183 ++ ++ V L P +L A+ M +G+ V + Sbjct: 172 GIAILLFMAFFVIPRFAVVFESLATLPATARAMLWWASLLRENGMAVGLAVAASIA 227 >gi|332365027|gb|EGJ42792.1| bacterial type II secretion system protein F [Streptococcus sanguinis SK355] Length = 408 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/162 (11%), Positives = 45/162 (27%), Gaps = 7/162 (4%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 L D + + +G+P+++AV ++ Q++ +++ S Sbjct: 57 KKIKLKDISLFCKQMSVMLESGIPLNNAVDILEQQATSKNLKSSLKIVSKSLKEGS---- 112 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + G L E L +S ++Q + Sbjct: 113 QLSKAMLDQEGMFPDLLIRMVQAGEKTGKLDEVLEKMSEHYTKELKTSRQIQGAMIYPAV 172 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 A++ + + +V P + + L Sbjct: 173 LAFLAVAAVLALLYVVI---PSFSGIFEQSGMAMPLPTRIVL 211 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ +A+ +++ V E ++ L + Sbjct: 270 FASTLAILTSAGIPLVEAIESAAATTNNAVVIEKMKIANE-----GLQKGERLTGMITST 324 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G+L L S + K +E + + Sbjct: 325 GLFPPMMLSMVKIGEESGSLESMLVKTSDYYEEELETAIKQLLSLLEPAMIIVMGVIIGG 384 Query: 139 CVSTLVYFTS 148 V++++ Sbjct: 385 IVASVMLPMF 394 >gi|229587496|ref|YP_002860534.1| putative bacterial type II secretion system protein F domain protein [Clostridium botulinum Ba4 str. 657] gi|229260234|gb|ACQ51271.1| putative bacterial type II secretion system protein F domain protein [Clostridium botulinum Ba4 str. 657] Length = 164 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 21/157 (13%), Positives = 56/157 (35%), Gaps = 3/157 (1%) Query: 1 MKHLIKKRTAKF--LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 +K I K F ++ P L+ +++ ++ G+PV + I + Sbjct: 5 IKDPIDKYKESFLKDNELPAVLETLIQGLQIGMPVYPILLYISNNKKGNTADLINLCVTK 64 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK-NMKA 117 + G+ +++++ + + +I + NL + L L + + + + N+K Sbjct: 65 VNSGMDINKALREVAEKSLNDYFLRMALIIEKTDRSVINLDKQLEYLQQDMEEERINIKT 124 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + A +IG + ++ + Sbjct: 125 EHADKLDNALFFPMLIGYFIPLIIMILVPLLRQMTKL 161 >gi|148827451|ref|YP_001292204.1| putative type IV pilin secretion protein [Haemophilus influenzae PittGG] gi|148718693|gb|ABQ99820.1| putative type IV pilin secretion protein [Haemophilus influenzae PittGG] Length = 406 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/162 (11%), Positives = 64/162 (39%), Gaps = 6/162 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71 + L+ + +++ +P+ +++ ++ + + +E+ R++++ GL+ S++I + Sbjct: 56 NSEISELLNQLATLLQSAIPLKNSLQILQQNCTQIMLNEWLERLLQSIESGLAFSQAIEQ 115 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 +Y+ QE + ++ G L+ ++ ++ K+Q + + Sbjct: 116 QEKYLTQQE-----IQLIQVGEMTGKLAIVCKKIATHRSQSLALQRKLQKIMLYPSMVLG 170 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 I L + + + + + ++ + L Sbjct: 171 ISLLLTLALLLFIVPQFAEMYSGNNAELPTITAILLSISNFL 212 Score = 36.3 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 12/137 (8%), Positives = 43/137 (31%), Gaps = 4/137 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS--EFRRVIETQHLGLSLSESIS--R 71 N + ++AG+P++ A+ + ++ ++ + + L Sbjct: 263 LVNFSQSLQIMLQAGVPLNQALDSFLPRTQTWQTKKTLVNDMVLDKEVRSILQWVSQGYA 322 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + + G L+ L ++ +++ N + + + +E Sbjct: 323 FSNSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIVDNYQEKLNHQIDLLSQMLEPLMMVI 382 Query: 132 IIGSLPFCVSTLVYFTS 148 I + + + Sbjct: 383 IGSLIGIIMMGMYLPIF 399 >gi|83749454|ref|ZP_00946446.1| General secretion pathway protein F [Ralstonia solanacearum UW551] gi|207738421|ref|YP_002256814.1| general secretion pathway gspf-related protein [Ralstonia solanacearum IPO1609] gi|83723891|gb|EAP71077.1| General secretion pathway protein F [Ralstonia solanacearum UW551] gi|206591787|emb|CAQ58693.1| general secretion pathway gspf-related protein [Ralstonia solanacearum IPO1609] Length = 391 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 8/147 (5%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLS 66 R F ++ + AGL V +A+ + + RS V+ G LS Sbjct: 49 RRHDFSLLL--FSQELLTLLEAGLSVFEALETLHEKEKRPFARSVLASVLARLSEGKPLS 106 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + M P T I ++ NL ++L+ ++AK+ + S+ Sbjct: 107 TAFGEMPELFP-----ALYTSIIRTAERTSNLPQSLSRYVEYQTRLDGVRAKIASASIYP 161 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMN 153 A + ++ + V Sbjct: 162 MVLAVVGAAVMLFLLGYVVPRFAVVYQ 188 >gi|293400659|ref|ZP_06644804.1| putative bacterial type II secretion system protein F domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305685|gb|EFE46929.1| putative bacterial type II secretion system protein F domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 342 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/149 (10%), Positives = 46/149 (30%), Gaps = 5/149 (3%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 ++AG + + +I Q + L + + + + Sbjct: 14 QFGLILQAGYGLEQGLHLIAEQLDEQELKTLV-----CRLNEEREKQPTLADTFAACEVF 68 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F+ + ++ GNL E + +L+ + M +++ ++ + V+ Sbjct: 69 DDFTIHMISIGEISGNLDEVMLSLADYYQRMDEMSNQLRQALSYPMILLLMMLCVVGVVA 128 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 V + L +D ++ + Sbjct: 129 WKVLPLFQDVLRSLGSDLSTQAVMFMQFG 157 >gi|225386976|ref|ZP_03756740.1| hypothetical protein CLOSTASPAR_00726 [Clostridium asparagiforme DSM 15981] gi|225046988|gb|EEG57234.1| hypothetical protein CLOSTASPAR_00726 [Clostridium asparagiforme DSM 15981] Length = 416 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 38/125 (30%), Gaps = 12/125 (9%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV----------GQSSDPVRSEF 52 K+R + L D+P + ++ + AG+ V A I ++ V E Sbjct: 256 KAAKQRENQLLMDYPEVVSKLMIFLGAGMTVRTAWERIAGDYRDMLGSGRRTPRHVYEEM 315 Query: 53 RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112 G+ ++ R L +++ + G L + + Sbjct: 316 YETCCQMSRGVPEGQAYGEFGRRCGLLPYMKLCSLLEQNRKNGSRNVRELLR--AEMTEA 373 Query: 113 KNMKA 117 ++ Sbjct: 374 FELRK 378 >gi|78223072|ref|YP_384819.1| type II secretion system protein [Geobacter metallireducens GS-15] gi|78194327|gb|ABB32094.1| type II secretion system protein [Geobacter metallireducens GS-15] Length = 402 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/152 (12%), Positives = 54/152 (35%), Gaps = 9/152 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 ++ ++AGLP+ A+ I+ + + + V E G++LS+++ + + P Sbjct: 72 LLVLIKAGLPIIQALDTILERFDRGQLADILKEVRENVKGGMALSDALEKYPKAFPH--- 128 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + G+L + L+ + ++ + + + ++ ++ Sbjct: 129 --LYVASVRAGERTGDLPLTIRRYIAFLKRVEEVRKRFVSALVYPS---ILVTVATIAIA 183 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 L+ + P + V + L Sbjct: 184 FLLVYVVPTFSQVYADAGSQLPLPTRILISFS 215 Score = 36.3 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 16/135 (11%), Positives = 52/135 (38%), Gaps = 7/135 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 + + + +G+P+ +++ + VG ++ + + + G+SLS +I + Sbjct: 267 AVASFTRTLATVIGSGIPIVESLKMSVGTLNNVVLERRLLQAVVKVEEGMSLSNAIESV- 325 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + + + G+L E L+++S + + + ++E + Sbjct: 326 -----KFMPPLALRMLGVGETTGSLEEMLSDISEYFESDIDARLHLLTTAIEPAIMIVMG 380 Query: 134 GSLPFCVSTLVYFTS 148 + + T+ Sbjct: 381 LVVGVIIITMYLPVF 395 >gi|83745828|ref|ZP_00942885.1| GspF-related protein [Ralstonia solanacearum UW551] gi|83727518|gb|EAP74639.1| GspF-related protein [Ralstonia solanacearum UW551] Length = 445 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 72/188 (38%), Gaps = 15/188 (7%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 IK R K + +RAGL VS+A+ + + P +RR+ + GL Sbjct: 100 KIKNRRRKVDAGL--VCIELGGLLRAGLTVSEALDSLAHRDDHPNVDVYRRLYDGLLSGL 157 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 LSE++ ++ P ++ G + +AL ++ + ++ ++ KV + + Sbjct: 158 PLSEAMKQVEGIFPG-----ILVAAIQANERSGRIPDALDEYAKYAQAQEALRKKVVSAA 212 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMN--VLINDPRGHMLLGVAAAF------MLIG 175 + + + V + + +LL V +L+G Sbjct: 213 VYPATVIGFGLLVVLFLLAYVIPRFAMVYDGTAMQMSGPTRILLAVGHFIHEQGWGLLVG 272 Query: 176 IMVMRLMI 183 I+++ +++ Sbjct: 273 IVLLGVIV 280 Score = 35.1 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 33/129 (25%), Gaps = 5/129 (3%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + R G +A+ + S RV L + M Sbjct: 316 CASLAMLTRGGYDFPEAMRLAS----PLAISASTRVQLDAARERILEGVLVSHA-LMQTD 370 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 F+ I + G+L+ + L++ R + +E + + Sbjct: 371 FSDGFAVRILQAGERVGDLAGSFDMLAQTYRRELETMLERTMRLVEPILLMTVASLIGAI 430 Query: 140 VSTLVYFTS 148 V + Sbjct: 431 VVLMYLPIF 439 >gi|145638797|ref|ZP_01794406.1| putative type IV pilin secretion protein [Haemophilus influenzae PittII] gi|145272392|gb|EDK12300.1| putative type IV pilin secretion protein [Haemophilus influenzae PittII] gi|309750287|gb|ADO80271.1| Type II secretory pathway, component PilC [Haemophilus influenzae R2866] Length = 406 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 70/174 (40%), Gaps = 9/174 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71 + L+ + +++ +P+ +++ ++ + + +E+ R++++ GL+ S++I + Sbjct: 56 NSEISELLNQLATLLQSVIPLKNSLQILQQNCTQIMLNEWLERLLQSIESGLAFSQAIEQ 115 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 +Y+ QE + ++ G L+ ++ ++ K+Q + + Sbjct: 116 QGKYLTQQE-----IQLIQVGEMTGKLAVVCKKIATHRSQSLALQRKLQKIMVYPSMVLG 170 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML---IGIMVMRLM 182 I L + + + + + ++ + L IGI++ + Sbjct: 171 ISLLLTLALLLFIVPQFAEMYSGNNAELPTITAILLSISNFLKQNIGILLFFAL 224 Score = 40.1 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 12/137 (8%), Positives = 44/137 (32%), Gaps = 4/137 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS--EFRRVIETQHLGLSLSESIS--R 71 N + ++AG+P++ A+ + ++ ++ + + L Sbjct: 263 LVNFSRSLQIMLQAGVPLNQALDSFLPRTQTWQTKKTLVNDIVLDKEVRSILQWVSQGYA 322 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + + G L+ L +++ +++ N + + + +E Sbjct: 323 FSDSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIADNYQEKLNHQIDLLSQMLEPLMMVI 382 Query: 132 IIGSLPFCVSTLVYFTS 148 I + + + Sbjct: 383 IGSLIGIIMMGMYLPIF 399 >gi|302380017|ref|ZP_07268496.1| type II secretion system F domain protein [Finegoldia magna ACS-171-V-Col3] gi|302312243|gb|EFK94245.1| type II secretion system F domain protein [Finegoldia magna ACS-171-V-Col3] Length = 363 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/159 (12%), Positives = 57/159 (35%), Gaps = 10/159 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 L + A +P+ + + ++ Q ++ ++ + + G+S+SES Sbjct: 29 FLRQFSILLNAKIPIIEIINLLKEQKEFKQLKPSLDKISDNLNNGMSVSESF------CG 82 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + F T + + G L + + +LS+ ++ K+Q + + + Sbjct: 83 DKNFDMFFTSMMKLGEESGRLDKVVYDLSKYYERTYDINKKIQNAMIYPI---ILTVTGI 139 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + ++ P ++++ + L + I Sbjct: 140 VMLIFMLKNVIPTFVDLFESSDMMLPLSTRILISVSNAI 178 >gi|258511163|ref|YP_003184597.1| Flp pilus assembly protein TadB-like protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477889|gb|ACV58208.1| Flp pilus assembly protein TadB-like protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 284 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 61/174 (35%), Gaps = 10/174 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + K+ A +I AG P+ ++A +S P++ R V Sbjct: 111 LNRVYKRARLLLKRQLRQARLLIALLTEAGAPIERSIAAAESVTSHPLKPYLRDVSIAIG 170 Query: 61 LGLSLSESISR----------MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 ++ R M + L E + F+ +++ ++ L + + I Sbjct: 171 ASEDAKDAGMRVQTVVEAFMGMAERLHLPEATQFAQLLTQSARYNTPLVDMMFTSLDIEE 230 Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 ++ +A+++ + +K S L V ++ Y ++ + G L Sbjct: 231 RIRDTEAELRYNNAISKISYISTLGLGIPVFGYLFLAVFSYALQILGNGFGISL 284 >gi|116491252|ref|YP_810796.1| Type II secretory pathway/competence component [Oenococcus oeni PSU-1] gi|116091977|gb|ABJ57131.1| Type II secretory pathway/competence component [Oenococcus oeni PSU-1] Length = 347 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/196 (9%), Positives = 57/196 (29%), Gaps = 23/196 (11%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57 ++ K L ++ + +++G ++ A + I +SS Sbjct: 10 LQKYTKSTKKLPRRQQVEFLSLLGQLIQSGYSINQATNFIQQISRESS------------ 57 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L+L + + + ++ + GNL + L L+ + Sbjct: 58 -WVKNLNLELAKGKNFAFAIKPYLNNSLNFQIGMADRYGNLEKILLQLADFSEKCLKQEN 116 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY-----MNVLINDPRGHMLLGVAAAFM 172 K++ + +++ + V + + ++ + +L V + Sbjct: 117 KIKQILRYPLVLVFLLIGIAVAVKIFLLPILSSWSNQQRVDFVDEYFWFKVLGVVLMTLL 176 Query: 173 LIGIMV--MRLMINFD 186 + + M Sbjct: 177 FLFYRWQSFKKMSKLK 192 >gi|39996883|ref|NP_952834.1| type IV pilus biogenesis protein PilC [Geobacter sulfurreducens PCA] gi|39983771|gb|AAR35161.1| type IV pilus biogenesis protein PilC, putative [Geobacter sulfurreducens PCA] gi|298505896|gb|ADI84619.1| type II secretion system protein PulF [Geobacter sulfurreducens KN400] Length = 402 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/164 (10%), Positives = 51/164 (31%), Gaps = 6/164 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66 R ++ ++AGLP+ A+ ++ + + V E G++LS Sbjct: 57 RRKVDNKALLTLNQELLVLIKAGLPIIQALDTVLERVERGTLFDVLAVVREDVKGGMALS 116 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + + P + G+L + L+ + ++ + + + Sbjct: 117 DALEKHTKVFPH-----LYVASVRAGERTGDLQLTIRRYIAFLKRVEEVRKRFISALVYP 171 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + + V T + + +A + Sbjct: 172 AILVTVATLAITFLLVYVVPTFSQVYADAGSQLPLPTRILIAFS 215 Score = 37.8 bits (86), Expect = 0.70, Method: Composition-based stats. Identities = 13/134 (9%), Positives = 47/134 (35%), Gaps = 5/134 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + + + +G+P+ +++ + VG ++ V + + E +S Sbjct: 267 AVSSFTRTLATVIGSGIPIVESLKMSVGTLNNRVLE-----RRMLEAVVKIEEGMSLSGA 321 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + + + G+L E L++++ + + + ++E + Sbjct: 322 IESARIMPPLALRMLGVGESTGSLEEMLSDIAEYFEGEIDARLHLLTTAIEPAIMIVMGL 381 Query: 135 SLPFCVSTLVYFTS 148 + + T+ Sbjct: 382 VVGVIIVTMYLPVF 395 >gi|145640234|ref|ZP_01795818.1| putative type IV pilin secretion protein [Haemophilus influenzae R3021] gi|145274820|gb|EDK14682.1| putative type IV pilin secretion protein [Haemophilus influenzae 22.4-21] Length = 406 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/162 (11%), Positives = 64/162 (39%), Gaps = 6/162 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71 + L+ + +++ +P+ +++ ++ + + +E+ +++++ GL+ S++I + Sbjct: 56 NSEISELLNQLATLLQSAIPLKNSLQILQQNCTQIMLNEWLEQLLQSIESGLAFSQAIEQ 115 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 +Y+ QE + ++ G LS ++ ++ K+Q + + Sbjct: 116 QGKYLTQQE-----IQLIQVGEMTGKLSVVCKKIATHRSQSLALQRKLQKIMLYPSMVLG 170 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 I L + + + + + ++ + L Sbjct: 171 ISLLLTLALLLFIVPQFAEMYSGNNAELPTITAILLSISNFL 212 Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 12/137 (8%), Positives = 43/137 (31%), Gaps = 4/137 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS--EFRRVIETQHLGLSLSESISRMV 73 N + ++AG+P++ A+ + ++ ++ + + L Sbjct: 263 LVNFSQSLQIMMQAGVPLNQALDSFLPRTQTWQTKRTLVNDIVLDKEVRSILQWVSQGYA 322 Query: 74 RYMPLQE--VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + + G L+ L +++ + + N + + + +E Sbjct: 323 FSHSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIAENYQAKLNHQIDLLSQMLEPLMMVI 382 Query: 132 IIGSLPFCVSTLVYFTS 148 I + + + Sbjct: 383 IGSLIGIIMMGMYLPIF 399 >gi|221070078|ref|ZP_03546183.1| type II secretion system protein [Comamonas testosteroni KF-1] gi|220715101|gb|EED70469.1| type II secretion system protein [Comamonas testosteroni KF-1] Length = 317 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 51/129 (39%), Gaps = 5/129 (3%) Query: 30 GLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 G+ + + VI + E + + G + S +RM ++ ++ Sbjct: 183 GMSLDQTLQVIGSDFGNVMPVLSREIQLANQQYSRGGTRERSFARMSEVYQSDNLANLTS 242 Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 +++ + GG + E L LR+++ K K + K + ++ +L + + Sbjct: 243 LMTQIDRYGGAVQEPLRIFGERLREQRKAKMKEMIGKISVKMTGVMVLTLLPALI--IVT 300 Query: 147 TSPGYMNVL 155 PG++ V+ Sbjct: 301 AGPGFLAVM 309 >gi|310830508|ref|YP_003965609.1| hypothetical protein PPSC2_p0148 [Paenibacillus polymyxa SC2] gi|309249975|gb|ADO59541.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2] Length = 292 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 1/147 (0%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R AK + DFP+ + I + A +P + AV+ V D + +R + L SL+E Sbjct: 144 RKAKLIADFPDFIRITEGYLTANVPFAKAVSECVKYVGDEWKPILQRFVVDCELK-SLNE 202 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + R + + E+ F ++ + + GG+ + + +R+ + ++ + Sbjct: 203 ALDGLKRDVDMFEIREFVALVKLTLEQGGDAKDGFTAQADKIRELQMDMIAIKIGKRQTM 262 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNV 154 L + T + Sbjct: 263 GIILQGPLLLCNLMVFGLPTVGSMTSF 289 >gi|219882771|ref|YP_002477935.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] gi|219861777|gb|ACL42118.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] Length = 419 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/172 (10%), Positives = 40/172 (23%), Gaps = 1/172 (0%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 K++ A + + G A+A I+ + +S Sbjct: 65 KKSRPKARAMVAASRQLAMYLEVGYDERAAIAEILDDGE-IGDIVLAHGLSEVLKDMSSE 123 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 T GG +++A ++ L +AKV+ Sbjct: 124 GIKMHEAMAKHPYIFPDLMTKTLAAGDKGGFVADAANQVADDLESEDEQRAKVKKALTYP 183 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + ++ + V L + L + + Sbjct: 184 MVVLVLSSAIFVFLMMYVVPKFGSMYTELSHGKAQLPFLTRLVMGVSAQMAW 235 >gi|303248829|ref|ZP_07335079.1| Type II secretion system F domain protein [Desulfovibrio fructosovorans JJ] gi|302489770|gb|EFL49701.1| Type II secretion system F domain protein [Desulfovibrio fructosovorans JJ] Length = 409 Score = 45.9 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 17/153 (11%), Positives = 42/153 (27%), Gaps = 4/153 (2%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + L + + AG P+ AV + Q+ V+ L + Sbjct: 71 ELAVTLRQLANLLSAGFPLLRAVTMAREQTR---SKALAHVLAQVEERLK-EGAALAQAL 126 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + ++ G L + L+ I ++ ++ K+ + Sbjct: 127 EEHPGVFPHIQVGLVRAAEASGTLEIVMGTLAGITEEQLALRRKLANALTYPLIMLVVGL 186 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 + + T V L + ++ + Sbjct: 187 GVVLLLVTFVVPRITRIFADLKQELPLATVVLI 219 Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 50/135 (37%), Gaps = 7/135 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMV 73 ++ +R G+PV A+ + + V + V G+SL+ ++ R Sbjct: 274 ALTRFARMLGTVLRHGIPVPQALLAVTPVLGNVVLEQNLTEVRREVEEGVSLTLALGRKP 333 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R P ++ + GGNL + L ++S ++ + + + E + Sbjct: 334 RIPP------LLVQMAAAGEAGGNLDDMLLSVSAMMENELVSRLTILTALFEPAMILLLG 387 Query: 134 GSLPFCVSTLVYFTS 148 G + F + ++ Sbjct: 388 GGVCFIIMAVLLPIF 402 >gi|302385704|ref|YP_003821526.1| Type II secretion system F domain protein [Clostridium saccharolyticum WM1] gi|302196332|gb|ADL03903.1| Type II secretion system F domain protein [Clostridium saccharolyticum WM1] Length = 350 Score = 45.9 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 14/153 (9%), Positives = 48/153 (31%), Gaps = 5/153 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 K + + I + + +P+ + ++V+ + V E ++++ Sbjct: 1 MKTKAKKPYSSRELSAFCLQISILLHSAIPLDEGLSVMAEDA---VWEEEKKLLMQMAEE 57 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L S+++ + ++ + G L + + +L+ + ++ Sbjct: 58 AELGIPFSKVLE--HAGVYPSYVIRMAELGEETGTLDQIMESLAGYYEKEHVLLKNIRNA 115 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 +++ + + T V L Sbjct: 116 LTYPILMIFMLLVVLLVLFTKVMPVFENVYQQL 148 >gi|262184094|ref|ZP_06043515.1| hypothetical protein CaurA7_08891 [Corynebacterium aurimucosum ATCC 700975] Length = 248 Score = 45.9 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 56/169 (33%), Gaps = 3/169 (1%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + I +RAG + A+ D R + L+ Sbjct: 79 LASYFGSIAAELRAGSTTASALRRGTDALPDFTPESLRTAL---STAAGLAAQGGSPAVA 135 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + EV F+ ++++ + G L+ + L + + A +A+A I+ Sbjct: 136 LTAPEVKRFAALLTLSGRHGVALANLIEQAQSQLDTARRHAGETAASLQGPQATAVILAC 195 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 LP + + L+ G +LL V A + G RL++ Sbjct: 196 LPLAGILMGRAMGADSLGFLLGGGLGGVLLDVGVALVCAGFAWSRLILR 244 >gi|254254047|ref|ZP_04947364.1| Type II secretory pathway component PulF [Burkholderia dolosa AUO158] gi|124898692|gb|EAY70535.1| Type II secretory pathway component PulF [Burkholderia dolosa AUO158] Length = 409 Score = 45.9 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 22/159 (13%), Positives = 47/159 (29%), Gaps = 8/159 (5%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 L + + AGL + +A+ + ++ + R+I G S S +++ Sbjct: 73 LALFLQELSTLLDAGLVLIEALEALRDKNEAGRTSKHVIDRIIAAMKQGQSFSTALAGQP 132 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 P S+ G L L + + M+ + + + Sbjct: 133 DIFPP-----LLVATIASSEDSGQLPIVLKRYQQYEGRIEQMRKRATGALIYPSVVIGVG 187 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR-GHMLLGVAAAF 171 ++ ++ V LI P +L A Sbjct: 188 IAILLFMAFFVIPRFAVVFESLITLPASAQAMLWWATVL 226 >gi|292654912|ref|YP_003534809.1| type IV pilus biogenesis complex membrane subunit [Haloferax volcanii DS2] gi|291370705|gb|ADE02932.1| type IV pilus biogenesis complex membrane subunit [Haloferax volcanii DS2] Length = 587 Score = 45.9 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 59/185 (31%), Gaps = 7/185 (3%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLG 62 + R D P+AL ++ R+V G V A+A + E V +G Sbjct: 360 RARVRAVEDGLPDALYLVGRAVSEGEAVESALARAATSVPGETGDLLDEAVGVQRRLRVG 419 Query: 63 LSLSESISR-MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + S ++ P V+ +T++ + + G A+ +++ L + A+ + Sbjct: 420 VVESFRGEYGVLESTPGPRVAGVATLLGLAASEGRPAGRAIVSMADQLSALARLDAEARR 479 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV---LINDPRGHMLLGVAAAFMLIGIMV 178 + ++ + M L L + ++ Sbjct: 480 ELASVTETLSNTAAVFGPLVAGATVALADGMAPAKTLDQTAVATPLSTADLGLAVGAYVL 539 Query: 179 MRLMI 183 + +I Sbjct: 540 LSAVI 544 >gi|119872899|ref|YP_930906.1| type II secretion system protein [Pyrobaculum islandicum DSM 4184] gi|119674307|gb|ABL88563.1| type II secretion system protein [Pyrobaculum islandicum DSM 4184] Length = 248 Score = 45.9 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 2/142 (1%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESI 69 + P L ++ +V AGL + AV + P+ RRV+ +G ++ E++ Sbjct: 30 RLEGQIPQVLRVLSDAVSAGLSLRGAVESAAALALRPMADVLRRVLTLSEVGGLTVEEAL 89 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM-EAKA 128 R+ +P F+ +++ ++ G L E L +R + V + Sbjct: 90 WRVAGEVPSPNFRRFALIVTEAARSGARLPEVLDVSARSFATVVEFRQSVASQLRPYVAL 149 Query: 129 SAWIIGSLPFCVSTLVYFTSPG 150 I+ L L+Y P Sbjct: 150 YYAIVVVLAVLTDVLIYMLLPQ 171 >gi|293374829|ref|ZP_06621132.1| hypothetical protein CUW_2519 [Turicibacter sanguinis PC909] gi|292646551|gb|EFF64558.1| hypothetical protein CUW_2519 [Turicibacter sanguinis PC909] Length = 268 Score = 45.9 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 15/182 (8%), Positives = 51/182 (28%), Gaps = 3/182 (1%) Query: 3 HLIKKRT---AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 L++K+ + ++ + V A + +A+ I P++ + ++I + Sbjct: 77 MLLRKKKLYNTHIRKQINLYMSLVSQMVSAKQTILNALITIAPNLQSPIKEDVYQLIRSI 136 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + +++ + + G + L+ L + + Sbjct: 137 EVDGYPYDALDKFSDKYSNDTYLRIFHNQLKLTFRHGGNEDILSELVDEHSSLEVYVDEY 196 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 K +I + + ++ G ++ + M++ Sbjct: 197 SKKKGFYKNYTYIFMAYLLIFPIMFVIFQGSMYENYVSSTFGLIVSSGIYIITTLIAMIV 256 Query: 180 RL 181 Sbjct: 257 EK 258 >gi|190150206|ref|YP_001968731.1| fimbrial biogenesis protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263544|ref|ZP_07545159.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|37929081|gb|AAO64353.1| fimbrial biogenesis protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189915337|gb|ACE61589.1| fimbrial biogenesis protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871187|gb|EFN02916.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 400 Score = 45.9 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 19/176 (10%), Positives = 62/176 (35%), Gaps = 11/176 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71 + + + + A +P+ A+ +++ + + + G ++S S+++ Sbjct: 57 SESITQVIKQLALLLNAAVPLKQALNMLLENTYHIRIYMWLNDLNRLIESGYTMSSSLTK 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + Y+ E + + G L E L N++ + + K++ + + Sbjct: 117 LNLYLAKSE-----IQLVRIGEQSGRLGEILQNIAVNRHQTEKLHKKIKKIMFYPVVTLI 171 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 I +L + + P ++ + R L + + + + ++ + Sbjct: 172 ISVALSLAMLLFIV---PQFIELY--SGREKPLPLITQMLFTLSLFLQHSLLQVTI 222 >gi|260892678|ref|YP_003238775.1| Type II secretion system F domain protein [Ammonifex degensii KC4] gi|260864819|gb|ACX51925.1| Type II secretion system F domain protein [Ammonifex degensii KC4] Length = 297 Score = 45.9 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 45/134 (33%), Gaps = 5/134 (3%) Query: 24 VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG---LSLSESISRMVRYMPLQE 80 V AGL A+ P+ E +R +E + + + + + E Sbjct: 162 AVGVAAGLTPWAALKEAAQGGDGPLYREVKRALEEGEAQARSGPRTAVLGALAEELGVPE 221 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 S F+ ++ + ++ + +R + ++ + + S ++ L Sbjct: 222 FSSFAELVCQAIEY--GAEGFVSAIEDAVRHMREVRRAKLEAAAQKAQSKMLVPLLVLVG 279 Query: 141 STLVYFTSPGYMNV 154 + + + P + V Sbjct: 280 AMMCFLLGPLFARV 293 >gi|104781569|ref|YP_608067.1| type II secretion pathway protein F [Pseudomonas entomophila L48] gi|95110556|emb|CAK15264.1| putative type II secretion pathway protein F [Pseudomonas entomophila L48] Length = 396 Score = 45.9 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 11/165 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 D + + AGLP+ DA+ + ++S R ++ + G SLS++++R Sbjct: 59 DLVLFSQELATLLNAGLPLIDALESLAEKASAGTPRKTLELLVRQLYEGRSLSQALARQP 118 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + P + S+ G L +ALA + ++ K+ S+ + Sbjct: 119 QVFP-----SLYVALVQSSERTGALGDALARYIGYRQRLDLVRQKLVGASVYPLLLLLVG 173 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 G + + V + G L ++ M IG+ + Sbjct: 174 GGVVLFLLGYVVPRFSLVFEGM-----GTELPWLSRVLMQIGLFL 213 >gi|313902412|ref|ZP_07835815.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM 13965] gi|313467343|gb|EFR62854.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM 13965] Length = 300 Score = 45.9 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 38/120 (31%), Gaps = 1/120 (0%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P L+ I + R GL + ++ V P+ + R G L + + + + Sbjct: 159 LPGWLEDIALAARGGLSLRQSIEVANDVGEGPLVDDARDAFARIRAGQPLRQPLLELAQL 218 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P EV+ + G L + L R++R + + I Sbjct: 219 YPHPEVTVALRTLVEAEVRGLPLPQTLDEHVRLMRALLA-RRWQRQADSLPFWLTVITMG 277 >gi|295677744|ref|YP_003606268.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1002] gi|295437587|gb|ADG16757.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1002] Length = 412 Score = 45.9 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 49/152 (32%), Gaps = 1/152 (0%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + +RAGLP++ A+ ++ + R R++ T ++ + Sbjct: 75 FTRQLSSLLRAGLPLAPALELLAQTPTSGQRQGMPRIVGTVARDIT-AGLRFSAALQRHP 133 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + + G L L+ L+ +AKV+A A + ++ Sbjct: 134 AQFNPLYCQLVEVGEAAGALVTVLSRLADDRERAAAQRAKVRAALTYPVAILLLAIAITA 193 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + V T + +A + Sbjct: 194 ALLVWVVPTFKQIFDGFGAKLPAPTQFVLALS 225 >gi|251793168|ref|YP_003007896.1| PilC [Aggregatibacter aphrophilus NJ8700] gi|247534563|gb|ACS97809.1| PilC [Aggregatibacter aphrophilus NJ8700] Length = 412 Score = 45.9 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 13/142 (9%), Positives = 56/142 (39%), Gaps = 1/142 (0%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISR 71 + L + ++A +P+ +++ +++ ++ + + R +++ GL+ S+++ + Sbjct: 57 NAEVCALLSQLATLLQAAVPLKNSLQILLQHCTNIALNAWLRQLLKDIESGLAFSQALEK 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 Q +++ + ++ G L +++ + ++ K++ + + Sbjct: 117 QNVEKQNQYLTYQDRQLIKVGEMTGKLPTVCHEIAQHKQQALALQRKIRKILLYPVLVLG 176 Query: 132 IIGSLPFCVSTLVYFTSPGYMN 153 I L + + + Sbjct: 177 ISLILTALLLLFIVPQFAAMYD 198 Score = 40.9 bits (94), Expect = 0.077, Method: Composition-based stats. Identities = 16/137 (11%), Positives = 45/137 (32%), Gaps = 4/137 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR----VIETQHLGLSLSESISR 71 + ++AG+P++ A+ + Q+ RS + +IE L + Sbjct: 269 LVGFSRSLFLMLQAGVPLNQALQSFLPQNPSWQRSPNVQGDWLLIEEVQSILHWLQQGYA 328 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + + G L + L ++ + + + + + + +E Sbjct: 329 FSASVSSHIFPLAAQQMLQVGEQSGQLPKMLQFIANDHQQQLDYQIDLLSQMLEPLLMVI 388 Query: 132 IIGSLPFCVSTLVYFTS 148 I G + + + Sbjct: 389 IGGLIGLIMLGMYLPIF 405 >gi|311107627|ref|YP_003980480.1| type II secretion system protein F domain-containing protein 3 [Achromobacter xylosoxidans A8] gi|310762316|gb|ADP17765.1| bacterial type II secretion system protein F domain protein 3 [Achromobacter xylosoxidans A8] Length = 331 Score = 45.9 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 56/129 (43%), Gaps = 5/129 (3%) Query: 30 GLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 GL + ++ V+V + + E R E G + +S++R+ ++S Sbjct: 196 GLSIDQSLQVLVKEFGQVLPVLAFELRLASELYVRGRTREQSLARLAAGFDNDDLSAICR 255 Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 +I+ Q GG + E L LRD++ ++ K + K + +I +L + L+ Sbjct: 256 LIAQVDQHGGAVQEPLNRFGERLRDKRRLELKEKVGKTTVKMTGVMIVTLLPAL--LIVT 313 Query: 147 TSPGYMNVL 155 G++ VL Sbjct: 314 GGAGFIAVL 322 >gi|56476087|ref|YP_157676.1| type II secretion system protein [Aromatoleum aromaticum EbN1] gi|56312130|emb|CAI06775.1| Bacterial type II secretion system protein [Aromatoleum aromaticum EbN1] Length = 392 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/141 (14%), Positives = 53/141 (37%), Gaps = 6/141 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 ++ +RAG+P+++A++ + + VR+ ++ G SLS ++ P Sbjct: 63 MLALLRAGIPLAEAISALAEGEGRRAVRAVLLKLQGALREGRSLSNALESASEAFP---- 118 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F + ++ +L AL + + ++ K+ + ++ + G + + Sbjct: 119 -SFYIAMVRAAERTSDLDLALERYIAYQQQVETLRGKLVSAAIYPVLLLAVGGLVVLFLL 177 Query: 142 TLVYFTSPGYMNVLINDPRGH 162 V + +D Sbjct: 178 GYVVPRFSHIYADVGSDLPWL 198 Score = 35.9 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 20/142 (14%), Positives = 41/142 (28%), Gaps = 8/142 (5%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR F + + G+P A+ ++ G S +R IE G + S Sbjct: 252 KRLKVF--QLARFYRTLGMLLSGGIPAITALRMVAGLLSPGLRGSLELAIEGIREGRAFS 309 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + + + GNL E L + + + + Sbjct: 310 ATLAAHGLTT------RVALRMLEVGERAGNLGEMLTRSAEFHENDTARQVEWLTRLFGP 363 Query: 127 KASAWIIGSLPFCVSTLVYFTS 148 I ++ V + Sbjct: 364 LLMLIIGCAIGLIVVLMYLPIF 385 >gi|15601951|ref|NP_245023.1| HofC [Pasteurella multocida subsp. multocida str. Pm70] gi|12720296|gb|AAK02170.1| HofC [Pasteurella multocida subsp. multocida str. Pm70] Length = 380 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/138 (13%), Positives = 44/138 (31%), Gaps = 3/138 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAV-IVGQSSDPVRSE--FRRVIETQHLGLSLSESIS 70 + + + + +G+P+ A+ + Q S + E R+ E L L Sbjct: 237 HELIHFCRHLHLMLSSGMPLQQALQTFLPTQKSGIAKHELTEMRLAEEVQLMLKGIAQGY 296 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 R + + + + G LSE L ++ + + + + + +E Sbjct: 297 RFSEVIGSNLFPEMAQQMLHVGEQTGRLSEMLQYIAESYQQKLEHQLDLLSQLLEPCLML 356 Query: 131 WIIGSLPFCVSTLVYFTS 148 I + + + Sbjct: 357 VIGSIIGVILLGMYLPMF 374 >gi|154249950|ref|YP_001410775.1| type II secretion system protein [Fervidobacterium nodosum Rt17-B1] gi|154153886|gb|ABS61118.1| type II secretion system protein [Fervidobacterium nodosum Rt17-B1] Length = 403 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 14/158 (8%) Query: 7 KRTAKFLDDFPN---ALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQHL 61 K+ A F + + + AG+ ++DAV + Q S R + V Sbjct: 55 KKKAVFQAKLKDIVLFARQLETMISAGIRLADAVITLSEQEVFSKKFRIALKEVASDMKA 114 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+S S+++ R + + GG L + ++ ++ +V++ Sbjct: 115 GVSFSDALERQG------IFDSIFINMVKAGEEGGILDVTMKKVANYYESVNRLREQVKS 168 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159 +I+G V + F P ++V P Sbjct: 169 SMAYPM---FILGFAVVVVIVISVFILPRLISVFGTVP 203 Score = 42.0 bits (97), Expect = 0.041, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 50/145 (34%), Gaps = 9/145 (6%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGL 63 I+K K ++ + + +G+P+ +A+ + S++P S +VIE G Sbjct: 259 IRKLRQKMSNE--RFTRTLGVLIGSGVPMVNALDMAAKASNNPRFISIISKVIEEVKAGS 316 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 +L ++ R + + G L + ++ + K Sbjct: 317 NLKGALKRAG------IFPQIVYEMVGTGEETGKLDVVMEKVADFYEEEILSDTKKLVSL 370 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTS 148 +E A++ + F T+ Sbjct: 371 IEPALIAFVGLFIAFIAFTMYSTIF 395 >gi|329123678|ref|ZP_08252238.1| type IV pilus assembly protein PilC [Haemophilus aegyptius ATCC 11116] gi|327469877|gb|EGF15342.1| type IV pilus assembly protein PilC [Haemophilus aegyptius ATCC 11116] Length = 405 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 67/174 (38%), Gaps = 9/174 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 + L+ + +++ +P+ +++ ++ + + R++++ GL+ S++I + Sbjct: 56 NSEISELLNQLATLLQSVIPLKNSLQILQQNCTQIMLNKWLERLLQSIESGLAFSQAIEQ 115 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 +Y+ QE + ++ G LS ++ ++ K+Q + + Sbjct: 116 QGKYLTQQE-----IQLIQVGEMTGKLSAVCKKIATHRSQSLALQRKLQKIMLYPSMVLG 170 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML---IGIMVMRLM 182 I L + + + + + ++ + L IGI++ + Sbjct: 171 ISLLLTLALLLFIVPQFAEMYSGNNAELPTITAILLSISNFLKQNIGILLFFAL 224 Score = 38.2 bits (87), Expect = 0.57, Method: Composition-based stats. Identities = 13/136 (9%), Positives = 44/136 (32%), Gaps = 3/136 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESIS--RM 72 N + ++AG+P++ A+ + ++ +I + + L Sbjct: 263 LVNFSHSLQIMLQAGVPLNQALDSFLPRTQTWQTKTLVNDIILDKEVRSILQWVSQGYAF 322 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G L+ L +++ +++ N + + + +E I Sbjct: 323 SNSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIADNYQEKLNHQIDLLSQMLEPLMMVII 382 Query: 133 IGSLPFCVSTLVYFTS 148 + + + Sbjct: 383 GSLIGIIMMGMYLPIF 398 >gi|330953057|gb|EGH53317.1| type II secretion system protein [Pseudomonas syringae Cit 7] Length = 294 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 63/149 (42%), Gaps = 5/149 (3%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSL 65 + + + + ++ +G+ V A+ V+ + + E R V+ GL L Sbjct: 142 QKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLVRVDSGLEL 201 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E + + + + E+S +++ GG ++L L +++ DR+ + + + Sbjct: 202 GEELRKTAALLAVDELSDTCVILNQLIHQGGGALKSLLMLKQLIDDRRLTRLQEYISKLS 261 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 AK S ++ L + ++ PG+M + Sbjct: 262 AKMSVVMMVFLFPALLIVL--AGPGFMAI 288 >gi|209518478|ref|ZP_03267300.1| type II secretion system protein [Burkholderia sp. H160] gi|209501111|gb|EEA01145.1| type II secretion system protein [Burkholderia sp. H160] Length = 399 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 11/161 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+ V DA+ + + + + ++ G SLS ++ R P Sbjct: 66 FARELAALLDAGVGVIDALRTLSGNERREASAEVYGDLLRQLEEGHSLSAALEHASRVFP 125 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 S+ G L+ +L SR ++ +V + ++ + G++ Sbjct: 126 P-----ILVACVKASEQTGGLAGSLTRYSRNSALLHELRGRVVSAAIYPSVLLLVGGAVV 180 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + V + G L ++ M G MV Sbjct: 181 LFLLGFVVPRFATLLEQ-----SGRELPLLSQLLMAWGGMV 216 >gi|17548370|ref|NP_521710.1| general secretion pathway GSPF-like transmembrane protein [Ralstonia solanacearum GMI1000] gi|17430616|emb|CAD17300.1| probable general secretion pathway gspf-related transmembrane protein [Ralstonia solanacearum GMI1000] Length = 395 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 6/136 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 ++ + AGL V +A+ + + RS V+ G LS + M P Sbjct: 62 FSQELLTLLEAGLSVFEALETLHEKEKRPFSRSVLASVLARLSEGKPLSTAFGEMPELFP 121 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 T I ++ NL ++L+ ++AK+ + S+ A + ++ Sbjct: 122 -----ALYTSIIRTAERTSNLPQSLSRYVEYQTRLDGVRAKIASASIYPMVLAVVGAAVM 176 Query: 138 FCVSTLVYFTSPGYMN 153 + V Sbjct: 177 LFLLGYVVPRFAVVYQ 192 >gi|227893242|ref|ZP_04011047.1| competence protein [Lactobacillus ultunensis DSM 16047] gi|227864925|gb|EEJ72346.1| competence protein [Lactobacillus ultunensis DSM 16047] Length = 333 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 22/173 (12%), Positives = 63/173 (36%), Gaps = 14/173 (8%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + LD + S+ G + +++ ++ +++ + G S S + ++ Sbjct: 15 EEQLA-FLDYLKHSLDNGFSLINSIELM-PALWPKREELMQKLADQMKEGASFSTELVKL 72 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 S + + GNL+E L L+ + R ++ K+++ + Sbjct: 73 -------VFSKTTVTQVNLALQQGNLTECLNQLATLNRLKQEQVKKLRSELSYPL---VL 122 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + + F S + + ++ G +++ ++ GI ++N Sbjct: 123 AIMMVILLVFMQSFVSTQFSS--TSEHSGDIVMLGLIVLVMTGIYFFVRIVNL 173 >gi|147920826|ref|YP_685368.1| putative type II secretion system protein, C-terminal fragment [uncultured methanogenic archaeon RC-I] gi|110620764|emb|CAJ36042.1| putative bacterial type II secretion system protein, C-terminal fragment [uncultured methanogenic archaeon RC-I] Length = 297 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/146 (14%), Positives = 47/146 (32%), Gaps = 1/146 (0%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESISRMVRY 75 P + + AG + A+ + S + E RV+ L+ ++ M Sbjct: 80 PELFYDLSEYIGAGGSIIKALKRVSAGSYGTMSDEMSRVLSEVEDEGLDLAAAMKAMAAR 139 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + +S VI +L L ++ R ++ + ++ + A ++ Sbjct: 140 VNNAYISRSVAVICEALTSSSDLEGILKMVAADGRLSMSLLKERRSGLLAAVVVMYLTTI 199 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRG 161 + V +L + L G Sbjct: 200 ILLLVVSLCITSLVPMSQQLKALSGG 225 >gi|307245742|ref|ZP_07527828.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254714|ref|ZP_07536541.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259155|ref|ZP_07540885.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|37929070|gb|AAO64348.1| fimbrial biogenesis protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306853444|gb|EFM85663.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862240|gb|EFM94207.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866822|gb|EFM98680.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 400 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/176 (10%), Positives = 62/176 (35%), Gaps = 11/176 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71 + + + + A +P+ A+ +++ + + + G ++S S+++ Sbjct: 57 SESITQVIKQLALLLNAAVPLKQALNMLLENTYHIRIYMWLNDLNRLIESGYTMSSSLTK 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + Y+ E + + G L E L N++ + + K++ + + Sbjct: 117 LNLYLAKSE-----IQLVRIGEQSGRLGEILQNIAVNRYQTEKLHKKIKKIMFYPVVTLI 171 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 I +L + + P ++ + R L + + + + ++ + Sbjct: 172 ISVALSLAMLLFIV---PQFIELY--SGREKPLPLITQMLFTLSLFLQHSLLQVTI 222 >gi|332797852|ref|YP_004459352.1| archaeal flagella assembly protein [Acidianus hospitalis W1] gi|332695587|gb|AEE95054.1| archaeal flagella assembly protein [Acidianus hospitalis W1] Length = 612 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/182 (10%), Positives = 57/182 (31%), Gaps = 2/182 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQ 59 + I+ R + + +R+GL + + + S V + Sbjct: 120 LSQKIESRRIGVDAELSAFTSVFAIFLRSGLTPRLMFDRLSSSSAFHYINSITLYVSKRI 179 Query: 60 HLGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 S+ +++ + P + + F + G + + ++ + D+ ++A Sbjct: 180 RYLGESVEDAMLHASQISPSKLLKDFFLAYVTAVRTGAPVINTIEAKAKDILDQLQLRAS 239 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + A + A +++I + + V + + L+ I+ Sbjct: 240 LAADRLSGIAESYVIWLSSGYIMFFLMMVLEAIFPVGGTSMIPLLGVLAVTVLPLVNIVF 299 Query: 179 MR 180 + Sbjct: 300 IY 301 Score = 37.8 bits (86), Expect = 0.70, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 42/134 (31%), Gaps = 5/134 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + I +RAGLP + I + LG L ++ + + Sbjct: 393 FMRAIAEGLRAGLPPETIIKNIKDSKEMGKFGKILNEIYAYITLGYPLKDAFRKGAERIM 452 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA----KVQALSMEAKASAWII 133 ++ ++G E + +++R + + +K KV+ L + + Sbjct: 453 DFTSKISLVSLADMMEIGSMTPETVESIARQIESQIKIKRDYESKVKILLVTPYMGVILS 512 Query: 134 GSLPFCVSTLVYFT 147 + + + Sbjct: 513 LIASVLLGSAILSL 526 >gi|307720366|ref|YP_003891506.1| Type II secretion system F domain-containing protein [Sulfurimonas autotrophica DSM 16294] gi|306978459|gb|ADN08494.1| Type II secretion system F domain protein [Sulfurimonas autotrophica DSM 16294] Length = 412 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 64/161 (39%), Gaps = 9/161 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71 + LD I + AGLP++ +A V Q+ + +++ F ++ G SL S Sbjct: 71 TEKLIAILDQIAIMLDAGLPLNYVLAEAVKNQNDEMIKAIFTKINNDIEGGKSLYNSAIT 130 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + + G LSE++++L+ IL++ + + K Q + Sbjct: 131 FKEQLGF-----ITLSMFKLGEETGRLSESVSHLTSILQNIIDNRKKFQKATRYPL---I 182 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 II ++ S ++ F P + + L ++ Sbjct: 183 IIFAMGIAFSVVIIFVVPQFKSFFQQSNMELPLPTQFLLWI 223 Score = 36.3 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 5/139 (3%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 A + + V AG+P+ +A+ + + E + + S+ E Sbjct: 271 KATLNAMISRFMYVFQVLVDAGIPMLEALNIASDIIENSYLKEKIK-----RISTSIEEG 325 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 S + + + ++GG L + L +++I +DR + A +E Sbjct: 326 KSLYQGFEKTEVFENMIVEMIKAGEIGGGLDKMLNKITKIYKDRFDYIVDNIATLIEPIL 385 Query: 129 SAWIIGSLPFCVSTLVYFT 147 A I G + + Sbjct: 386 IAAIAGFVMVLALGIFLPM 404 >gi|227832052|ref|YP_002833759.1| hypothetical protein cauri_0222 [Corynebacterium aurimucosum ATCC 700975] gi|227453068|gb|ACP31821.1| putative membrane protein [Corynebacterium aurimucosum ATCC 700975] Length = 249 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 56/169 (33%), Gaps = 3/169 (1%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + I +RAG + A+ D R + L+ Sbjct: 80 LASYFGSIAAELRAGSTTASALRRGTDALPDFTPESLRTAL---STAAGLAAQGGSPAVA 136 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + EV F+ ++++ + G L+ + L + + A +A+A I+ Sbjct: 137 LTAPEVKRFAALLTLSGRHGVALANLIEQAQSQLDTARRHAGETAASLQGPQATAVILAC 196 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 LP + + L+ G +LL V A + G RL++ Sbjct: 197 LPLAGILMGRAMGADSLGFLLGGGLGGVLLDVGVALVCAGFAWSRLILR 245 >gi|150026347|ref|YP_001297173.1| hypothetical protein FP2317 [Flavobacterium psychrophilum JIP02/86] gi|149772888|emb|CAL44372.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86] Length = 378 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/152 (8%), Positives = 42/152 (27%), Gaps = 8/152 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + ++AG+ + +A+ +I+ E + + + + Sbjct: 45 FYQELAVLLKAGITIKEALTLIIESLKKKADKELIQTALDDVINGKPFSEALLVSKSFSE 104 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 E + G ++ L + K + A ++ + Sbjct: 105 YEYYS-----LKIGEETGTTAQVCHKLGVFYERKNEQKRIIIAALTYPA---IVLTTALL 156 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 V ++ + P + ++ + +L Sbjct: 157 VVIFMLSYVVPMFQDIFKQNNVELPMLTRIIV 188 >gi|171186313|ref|YP_001795232.1| type II secretion system protein [Thermoproteus neutrophilus V24Sta] gi|170935525|gb|ACB40786.1| type II secretion system protein [Thermoproteus neutrophilus V24Sta] Length = 248 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 54/146 (36%), Gaps = 2/146 (1%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESI 69 + P L ++ +V AGL + AV + P+ R V+ +G ++ E++ Sbjct: 30 RLEGQIPQVLRVLSDAVSAGLSLRGAVESAAALALRPMADVLRHVLTLSEMGGLTVEEAL 89 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM-EAKA 128 R+ +P F+ +++ ++ G L E L +R + V + Sbjct: 90 WRVAGEIPSPNFRRFALIVTEATRSGAKLPEVLDVSARSFATVVEFRQSVASQLRPYVAL 149 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNV 154 I+ L L+Y P + Sbjct: 150 YYAIVVVLAVLTDVLIYMLLPQLAQL 175 >gi|190574783|ref|YP_001972628.1| putative transmembrane type II secretion protein [Stenotrophomonas maltophilia K279a] gi|190012705|emb|CAQ46333.1| putative transmembrane type II secretion protein [Stenotrophomonas maltophilia K279a] Length = 311 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/147 (13%), Positives = 57/147 (38%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 + +K+R ++ P +D++ G + ++ + + + E + Sbjct: 147 LSSWVKRRRRAVDNELPLLIDLLRLLQGVGFSMDQSLQTLGDKLRDALPVLGGELQEANV 206 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++S+ R+ +++ +I GG + E L S LR+++ Sbjct: 207 AYTHGRTRAQSLRRLSEVYADDDLTSLMQLILQVHAHGGAVQEPLRQFSIRLREQRRNTL 266 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 K + + K + ++ +L + ++ Sbjct: 267 KEKVGKLSVKMTVVMMLTLLPALMLVL 293 >gi|156935375|ref|YP_001439291.1| type IV pilin biogenesis protein [Cronobacter sakazakii ATCC BAA-894] gi|156533629|gb|ABU78455.1| hypothetical protein ESA_03233 [Cronobacter sakazakii ATCC BAA-894] Length = 399 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/167 (10%), Positives = 58/167 (34%), Gaps = 6/167 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 A+ + ++AG+ ++ + ++ Q +++R ++ L + S +R P Sbjct: 62 AIRQLAALLQAGVSLTQGLMMLASQHP---IAQWRALLGELAKQLGRGVAFSETLRQWP- 117 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 ++ ++ G L L++ D++ ++ +V + L Sbjct: 118 AVFPPLYILLMRTGEMTGKLDVCCQQLAQQQEDQQKLRKQVIKALRYPAFIFNVALLLTL 177 Query: 139 CVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLMI 183 ++ V ++ ++ A + + + +++ Sbjct: 178 GMTCFVLPQFTAIYRSFNTPLPLVTRAVIALSEALIQHAALWLSVLV 224 Score = 38.6 bits (88), Expect = 0.37, Method: Composition-based stats. Identities = 18/136 (13%), Positives = 45/136 (33%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRM 72 ++ RAG+P+ ++ + +S + RV + GL +++ + Sbjct: 260 QQLSQIYTVLSLMQRAGIPLLQSLGSVEETLASPLWQQAVGRVKASIAGGLPFWKALEQE 319 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G+L L L+ + + +A+ A ++E I Sbjct: 320 S------VFTALCIQLVRTGEETGSLDLMLEKLAEWHLGQTSERAQTLAATLEPLMMMVI 373 Query: 133 IGSLPFCVSTLVYFTS 148 + V + Sbjct: 374 GLIVGTLVVAMYLPIF 389 >gi|322514592|ref|ZP_08067625.1| HofF protein [Actinobacillus ureae ATCC 25976] gi|322119531|gb|EFX91618.1| HofF protein [Actinobacillus ureae ATCC 25976] Length = 397 Score = 45.5 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 52/161 (32%), Gaps = 6/161 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 D+ L + + A +P A+ + ++ + + + G S S S++++ Sbjct: 58 DEVTQFLAQLALLINASIPFKQALMMQQENCTNIKLYQWLLALNASISSGYSFSASLAKL 117 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 Y+ QE + + G L L N+++ + KV+ ++ I Sbjct: 118 NLYLSKQE-----IQLIRMGEQSGKLGVVLENIAKTRNQADKLAKKVRKITFYPLIVLVI 172 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 L + + + L + + L Sbjct: 173 SCVLTLGLLVFIVPQFADLYMDKAQNLPWLTSLLFSLSAFL 213 >gi|297619917|ref|YP_003708022.1| Type II secretion system F domain-containing protein [Methanococcus voltae A3] gi|297378894|gb|ADI37049.1| Type II secretion system F domain protein [Methanococcus voltae A3] Length = 294 Score = 45.5 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 70/158 (44%), Gaps = 1/158 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLG 62 L + + KF + P AL I+V S+ +G V +++ I+ + + + ++ Sbjct: 73 LYENKIDKFEKNLPKALYIMVLSLNSGRSVIESINEIINSDIKEVNIAFSKIILLMSERK 132 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS +S+ + + + +I + GGNL+E+L L++ L D N+K ++ ++ Sbjct: 133 LSFEDSVLIVSNSLDSKLFKQLGRLIIENRKYGGNLAESLNTLAKTLEDLTNLKNQLLSV 192 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 + + II + + + + ++ + + Sbjct: 193 ASNGLSVGIIILCIMIPATAGLVGSFLNLISAISSTAT 230 >gi|307256931|ref|ZP_07538709.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307261363|ref|ZP_07543038.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306864665|gb|EFM96570.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306869094|gb|EFN00896.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 400 Score = 45.5 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 19/176 (10%), Positives = 62/176 (35%), Gaps = 11/176 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71 + + + + A +P+ A+ +++ + + + G ++S S+++ Sbjct: 57 SESITQVIKQLALLLNAAVPLKQALNMLLENTYHIRIYMWLNDLNRLIESGYTMSSSLTK 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + Y+ E + + G L E L N++ + + K++ + + Sbjct: 117 LNLYLAKSE-----IQLVRIGEQSGRLGEILQNIAVNRYQTEKLHKKIKKIMFYPVVTLI 171 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 I +L + + P ++ + R L + + + + ++ + Sbjct: 172 ISVALSLAMLLFIV---PQFIELY--SGREKPLPLITQMLFTLSLFLQHSLLQVTI 222 >gi|256826296|ref|YP_003150256.1| Flp pilus assembly protein TadC [Kytococcus sedentarius DSM 20547] gi|256689689|gb|ACV07491.1| Flp pilus assembly protein TadC [Kytococcus sedentarius DSM 20547] Length = 211 Score = 45.5 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 18/146 (12%), Positives = 54/146 (36%), Gaps = 7/146 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 DD LD++ ++ +G V+DA+ ++ + +P+ R+V+ + G++ +++ + Sbjct: 70 DDLAAVLDLMALALDSGCAVTDALELVADEVPEPLAGHLRQVVAARRWGVTGADAWKGLP 129 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + +++ G +E + + LR + + A + + Sbjct: 130 SQWGP-----VAQALTLAQLAGAPPAETIRRAAADLRRDRRAALERAAARLPVFLVIPLG 184 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDP 159 ++ P + + Sbjct: 185 TVFMPA--FVLIAVVPLVVALATQTL 208 >gi|315500686|ref|YP_004089487.1| Type II secretion system F domain protein [Asticcacaulis excentricus CB 48] gi|315418698|gb|ADU15336.1| Type II secretion system F domain protein [Asticcacaulis excentricus CB 48] Length = 390 Score = 45.5 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 16/167 (9%), Positives = 48/167 (28%), Gaps = 13/167 (7%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D L + +R G + A+ ++ + + + LS S Sbjct: 57 ADLEALLTNLSVLLRTGADIRTALGILDDEGKGLKAAAGKI----------LSGSTIEAA 106 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G+L L +++L R+ ++ ++ ++ Sbjct: 107 LTPLFPAGQAHLGALIAAGEARGDLPSGLEAAAKVLAARRLIRQQLIEALSYPA---FVF 163 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + ++ ++ P +L + + +M + Sbjct: 164 VTAVAALTVILLVVVPAIAPLLDETGQSVPVYFQIIVWMSQALQWGW 210 >gi|307731055|ref|YP_003908279.1| type II secretion system F domain-containing protein [Burkholderia sp. CCGE1003] gi|307585590|gb|ADN58988.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1003] Length = 409 Score = 45.5 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 51/166 (30%), Gaps = 8/166 (4%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLS 64 R + + +RAGLP++ A+ ++ + + + GL Sbjct: 62 RAKASAAEVTLFTRQLASLLRAGLPLAPALDLLAQPQNARRAGMPRIVGTLARDITAGLR 121 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 S ++ R + + + G L LA ++ +AKV+A Sbjct: 122 FSAALQRHPAQ-----FNALYCQLVEVGEAAGALPAVLARIADDRERAAAQRAKVRAALT 176 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 A + ++ + V T + L +A + Sbjct: 177 YPLAILLLALTITAALLVWVVPTFKQIFDGFGARLPAPTLFVLALS 222 >gi|226326047|ref|ZP_03801565.1| hypothetical protein COPCOM_03865 [Coprococcus comes ATCC 27758] gi|225205589|gb|EEG87943.1| hypothetical protein COPCOM_03865 [Coprococcus comes ATCC 27758] Length = 353 Score = 45.5 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 13/147 (8%), Positives = 44/147 (29%), Gaps = 5/147 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + + + +++G+ + V ++ + E I + + + Sbjct: 17 EIASFCSEMAMILKSGISSLEGVDLLREDAQTKAEKELLDEIYQSVMDTGRLDQALEETK 76 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 P + ++ + G L E + +L+ + ++ V++ ++ Sbjct: 77 VFP-----EYLIRMTQIGEETGTLDEVMESLAEHYDREEAIRRSVRSAISYPLLMIGMML 131 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRG 161 + + T V + G Sbjct: 132 VIIIILMTKVMPVFDQVFRQFGQEMTG 158 >gi|218883478|ref|YP_002427860.1| type II secretion system protein [Desulfurococcus kamchatkensis 1221n] gi|218765094|gb|ACL10493.1| type II secretion system protein [Desulfurococcus kamchatkensis 1221n] Length = 562 Score = 45.5 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 22/176 (12%), Positives = 58/176 (32%), Gaps = 2/176 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L R K + L +V + GLP ++ + + R+ Sbjct: 339 IYYLYVSREYKVVRGITRFLRDLVEVRKTGLPPERSIIELSSRDYGVFTQYLRKAAMELS 398 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L I +++ + +++ ++GG E L NL+ + ++ + + Sbjct: 399 IGVPLRRIIDELMKKIRSWTGQVLLFILTDSIEVGGGTVEVLENLAWFAESVEAIEDEKK 458 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLI 174 ++ G L + + G +L + +++ Sbjct: 459 RSLRTLMIVPYMGGILSAVTVIYMVSYMAKLPVQVGAFGQAAGLVLPSIVLTGLVL 514 Score = 35.9 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 65/181 (35%), Gaps = 6/181 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQH 60 + R + +FP + V +GL A ++ S R ++ ++ Sbjct: 66 IATSRASSIDGEFPFLSAYLSTMVMSGLSPYIAFERVLRGSIIFKRSSELAQRFILLSRV 125 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + + + + V + + GG++ + L SR+L + + K+ Sbjct: 126 LGRDPLTAFDELSQRVASSRVKETLSGYIATVKAGGDVIDYLNKRSRLLFNEMLVGMKII 185 Query: 121 ALSMEAKASAWIIGSLPFCV-STLVYFTSPGYMN--VLINDPRGHMLLGVAAAFMLIGIM 177 A + A++ L + T++YF + G+ G +L G++ Sbjct: 186 ADRLGGLLEAYLAMVLLTMISFTVLYFVTTGFAGVVPFGLSSGGMYFFLYIVMPLLSGVI 245 Query: 178 V 178 + Sbjct: 246 I 246 >gi|304405042|ref|ZP_07386702.1| Type II secretion system F domain protein [Paenibacillus curdlanolyticus YK9] gi|304345921|gb|EFM11755.1| Type II secretion system F domain protein [Paenibacillus curdlanolyticus YK9] Length = 268 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 61/168 (36%), Gaps = 20/168 (11%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG------------------ 42 + +++R + P+ L ++ V AG V A+ Sbjct: 97 VAQQMERRRQDMVLALPDVLGKLMLLVGAGETVQRAIIRCADGREDVTGSSINKGKKRKK 156 Query: 43 -QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS-TVISVQSQLGGNLSE 100 + P+ E+ R+I + G S ++SI R +QE S F+ V+ + G Sbjct: 157 AKLEHPLHVEWTRMIRSLENGQSFAQSIEAFSRRCAVQEASMFATVVLLHYRKGGDRFVL 216 Query: 101 ALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 AL LS L +++ A+++ +K + G + + Sbjct: 217 ALKELSFSLWEKRKATARMRGEEASSKLVFPLAGIFFLLLIAVAAPAV 264 >gi|126459955|ref|YP_001056233.1| type II secretion system protein [Pyrobaculum calidifontis JCM 11548] gi|126249676|gb|ABO08767.1| type II secretion system protein [Pyrobaculum calidifontis JCM 11548] Length = 261 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 70/183 (38%), Gaps = 7/183 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHL 61 HL+ R + F ++F L +++ AG+P+ +A + ++ + EF V + Sbjct: 69 HLVSARRSHFENNFVYTLAVMLPLFAAGVPLGRVIARLAEVEADKYIAREFALVTREVVV 128 Query: 62 GL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + +E++ +P Q +++ S++ + E L + K +KA+ Sbjct: 129 MGATPTEALLHSAERVPSQAYRETVNLLAKASRVTERVDEVLLARLEWMLRGKQVKAQSL 188 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV-----LINDPRGHMLLGVAAAFMLIG 175 S+ +++ ++ + + + + DP + L L+G Sbjct: 189 VRSLALLFEIYVVAAMLLPILVAILALALSPLGALEVAGFALDPVTLIALTGLIYSPLVG 248 Query: 176 IMV 178 + Sbjct: 249 AVF 251 >gi|323466888|gb|ADX70575.1| Competence protein [Lactobacillus helveticus H10] Length = 353 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 69/185 (37%), Gaps = 16/185 (8%) Query: 1 MKHLIKKRTAKF--LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 +K++ + + + LD + S+ G + +++ ++ + +++++ Sbjct: 21 LKYMSNSKKDRLNSEEQLV-FLDYLKHSLENGFSLINSIELMPVLWPKK-KELMQKLVKR 78 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G S S + ++ S + + GNL E L L+ + R ++ K Sbjct: 79 MKEGNSFSVELIQLG-------FSKTTVTQVNLALQQGNLIECLNQLAILSRLKQEQVKK 131 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 ++A A ++ L + + + ++ G +++ +L GI Sbjct: 132 LRAELSYPFVLAIMMVILLVFMQSFISTQFND-----GSEYSGDLIMLGLIGAVLAGIYF 186 Query: 179 MRLMI 183 + +I Sbjct: 187 LARII 191 >gi|229827059|ref|ZP_04453128.1| hypothetical protein GCWU000182_02443 [Abiotrophia defectiva ATCC 49176] gi|229788677|gb|EEP24791.1| hypothetical protein GCWU000182_02443 [Abiotrophia defectiva ATCC 49176] Length = 310 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 67/184 (36%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K + K ++ AL II S + AV + ++PV+ F+ + + Sbjct: 121 VKFSSGRIEKKISEELETALSIITNSYIRSENIILAVEENINYINEPVKGIFQSFLNECN 180 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +S +R V +Q Q L L + + L + + + A++ Sbjct: 181 YINPDIKSNLATLRGRLSDPVFVEYCNALIQCQNDITLKSTLYGIVKKLSNIRIVTARLD 240 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L +++ ++ Y + + ++ + GH+++ +A ++ + + Sbjct: 241 GLIYAPVKEFFMMVTIYLVNLPAFYLLNKEWYRIVTDTTTGHIMVATSAGIIVFAALNVL 300 Query: 181 LMIN 184 + Sbjct: 301 RLTR 304 >gi|225026645|ref|ZP_03715837.1| hypothetical protein EUBHAL_00896 [Eubacterium hallii DSM 3353] gi|224956015|gb|EEG37224.1| hypothetical protein EUBHAL_00896 [Eubacterium hallii DSM 3353] Length = 191 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 56/128 (43%), Gaps = 7/128 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDA-------VAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 F N L ++ S++AG ++++ + + ++P+ + RR+I+ L ++L Sbjct: 46 EKGFQNLLQSMMTSLQAGYSLNNSCRIALKELEELYQDQNNPMLRQMRRIIQGLDLHIAL 105 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + L+E F+ VI + GGN+ E L + L+ + + + +++ L Sbjct: 106 EQLFMEFAESTGLEEAKQFAVVIEIVRSTGGNMVEILKRTMQHLKYKMDTEEEIRVLLSG 165 Query: 126 AKASAWII 133 + Sbjct: 166 KLFEKTLC 173 >gi|169834895|ref|YP_001715935.1| type II secretion system protein F [Clostridium botulinum A3 str. Loch Maree] gi|169409002|gb|ACA57412.1| bacterial type II secretion system protein F domain [Clostridium botulinum A3 str. Loch Maree] Length = 250 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 21/157 (13%), Positives = 57/157 (36%), Gaps = 3/157 (1%) Query: 1 MKHLIKKRTAKF--LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 +K I K F ++ P L+ +++ ++ G+PV + I + + Sbjct: 91 IKDPIDKYKESFLKDNELPAVLETLIQGLQIGMPVYSILLYISNNKKGNTANLINLCVTK 150 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK-NMKA 117 + G+ +++++ + + +I + NL + L L + + + + N+K Sbjct: 151 VNSGMDINKALREVAEKSLNDYFLRMALIIEKTDRSVMNLDKQLEYLQQDMEEERINIKT 210 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + A +IG + ++ + Sbjct: 211 EHADKLDNALFFPMLIGYFIPLIIMILVPLLRQMTKL 247 >gi|309972542|gb|ADO95743.1| Type II secretory pathway, component PilC [Haemophilus influenzae R2846] Length = 405 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 20/174 (11%), Positives = 67/174 (38%), Gaps = 9/174 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 + L+ + +++ +P+ +++ ++ + + R++++ GL+ S++I + Sbjct: 56 NSEISELLNQLATLLQSVIPLKNSLQILQQNCTQIMLNKWLERLLQSIESGLAFSQAIEQ 115 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 +Y+ QE + ++ G L+ ++ ++ K+Q + + Sbjct: 116 QGKYLTQQE-----IQLIQVGEMTGKLAVVCKKIATHRSQSLALQRKLQKIMLYPSMVLG 170 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML---IGIMVMRLM 182 I L + + + + + ++ + L IGI++ + Sbjct: 171 ISLLLTLALLLFIVPQFAEMYSGNNAELPTITAILLSISNFLKQNIGILLFFAL 224 Score = 38.2 bits (87), Expect = 0.53, Method: Composition-based stats. Identities = 13/136 (9%), Positives = 44/136 (32%), Gaps = 3/136 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESIS--RM 72 N + ++AG+P++ A+ + ++ +I + + L Sbjct: 263 LVNFSHSLQIMLQAGVPLNQALDSFLPRTQTWQTKTLVNDIILDKEVRSILQWVSQGYAF 322 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G L+ L +++ +++ N + + + +E I Sbjct: 323 SDSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIADNYQEKLNHQIDLLSQMLEPLMMVII 382 Query: 133 IGSLPFCVSTLVYFTS 148 + + + Sbjct: 383 GSLIGIIMMGMYLPIF 398 >gi|224372075|ref|YP_002606447.1| putative general secretion pathway protein F [Nautilia profundicola AmH] gi|223589253|gb|ACM92989.1| putative general secretion pathway protein F [Nautilia profundicola AmH] Length = 399 Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 19/184 (10%), Positives = 52/184 (28%), Gaps = 18/184 (9%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + ++A +P+ A+ + Q+ + + ++ + +S Sbjct: 57 RKELSKLFNSLGLYLKASIPLISAINLSKNQTDNSK---IIKFLDYIQNSIKEGKSFYAS 113 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + T + G L L +S+ L+D + + +K + + Sbjct: 114 LESQNFINLPKYVTSTVKIGEESGKLDIVLVEISKFLKDEEKISSKTSQALVYPMFIIIV 173 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRG---------------HMLLGVAAAFMLIGIM 177 + + T V L D + + G Sbjct: 174 AVFMISFMLTTVVPKIVKVFENLHQDLPAITKIVINTGNFLQHSWQAILILFIVFAAGFR 233 Query: 178 VMRL 181 +M Sbjct: 234 IMYK 237 >gi|297526958|ref|YP_003668982.1| Type II secretion system F domain protein [Staphylothermus hellenicus DSM 12710] gi|297255874|gb|ADI32083.1| Type II secretion system F domain protein [Staphylothermus hellenicus DSM 12710] Length = 591 Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 65/177 (36%), Gaps = 6/177 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE---FRRVIETQHLGLS 64 R +FP + V +GL A I S ++ R ++ + LG Sbjct: 97 RAGGIEGEFPYTTAYLSMMVMSGLSPYVAFERITHASKVFTKTAELSQRFILLVRVLGRD 156 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + S + + P + GG++++ L +R+L ++ K+ A + Sbjct: 157 PLTAFSMLAQRTPSPTARDLLMGYVTTVRAGGDVADYLNKKARLLFSELIVRMKIIADRL 216 Query: 125 EAKASAWIIGSLPFCV-STLVYFTSPGYMN--VLINDPRGHMLLGVAAAFMLIGIMV 178 A++ L + ++YF + +++ P L+ M+ G+++ Sbjct: 217 AGLLEAYLALVLLSLISLAVMYFVTVSFVSAVPFGLSPASLFLVLYILIPMISGMII 273 Score = 43.2 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 20/174 (11%), Positives = 54/174 (31%), Gaps = 8/174 (4%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R K + L +V + GL ++ + ++ R++ LG+ LS Sbjct: 374 REYKVITGITRFLRDLVEIRKTGLSPERSIIELSRRNYGVFTKYLRKIALQLSLGIPLSR 433 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 I + + + + V++ ++GG E + +L+ ++ + + Sbjct: 434 IIQELFKKIIVWRAKVLLFVLTDTIEVGGGSVEIMEHLAWFAESVDAIEDEKKKNLRTLL 493 Query: 128 ASAWIIGSLPFCVSTLVYFT--------SPGYMNVLINDPRGHMLLGVAAAFML 173 ++ G L ++ Y+ ++ + Sbjct: 494 IVPYMGGILTAATVIMLAVFMGSLQFGAGGSYIQAASTTLPAIVINTYLMGLVA 547 >gi|291455823|ref|ZP_06595213.1| conserved hypothetical protein [Bifidobacterium breve DSM 20213] gi|291382751|gb|EFE90269.1| conserved hypothetical protein [Bifidobacterium breve DSM 20213] Length = 155 Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 51/158 (32%), Gaps = 5/158 (3%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 + G + +A Q RR+ + L + R ++ + Sbjct: 1 MAGGGTLVEAFE---EQFGGRF--AVRRLTPQRLTDLFERRRLPDESRAQSVRAAMGAAA 55 Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 +V +LG L + + + M+ +A+ ++ +LP L Sbjct: 56 AATVSEELGCRAVPCLEAVLDVYSHMRLMQNMRAQAFAVPQATVGLLSALPAIAVVLGEL 115 Query: 147 TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + L RG + L ++G++ MR ++ Sbjct: 116 MGAHPLLFLFGSQRGLVCLVSGGCCYVVGLVWMRALMR 153 >gi|305664070|ref|YP_003860358.1| Type II secretion system F domain [Ignisphaera aggregans DSM 17230] gi|304378639|gb|ADM28478.1| Type II secretion system F domain [Ignisphaera aggregans DSM 17230] Length = 596 Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 17/151 (11%), Positives = 48/151 (31%), Gaps = 2/151 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHL 61 +I R + P + + R G + + + S R V + Sbjct: 117 MISNRKNSVESELPFFMAYVSTMARGGYSLEKLIERVSQLKIFSGIRLEAQRIVTHMKMF 176 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G ++ R+ P + + GG++ L +R + + + + + Sbjct: 177 GEDPITALDRVAMNHPSTRFRDVMLGYTTTLRSGGDVVHYLETRTREVFESRMNEIRALF 236 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 + + + + + ++ ++F G + Sbjct: 237 GRLASYLEVYTVFGVIMAIAVFIFFAVSGAL 267 Score = 35.1 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 23/165 (13%), Positives = 60/165 (36%), Gaps = 5/165 (3%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + L + + GL + ++ ++ + R +GLSL E++ + +R + Sbjct: 397 ADFLRDLSEIRKTGLSPEKCIILLSARNYKNLTPVVSRAGAALSIGLSLEEALRKALRGV 456 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRI----LRDRKNMKAKVQALSMEAKASAWI 132 ++ +GG E + L+R + + ++++ + + Sbjct: 457 KEWFTIASFRFLTDSILVGGGSPEVIDTLARFTETLSELEEETRRRMRSQVFLPYFGSAM 516 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + S+P + + + + + LG A L+GI+ Sbjct: 517 LSSMPIIIL-YMLLSIANIKLTAVAPLILILSLGAAINSFLMGII 560 >gi|158320934|ref|YP_001513441.1| hypothetical protein Clos_1905 [Alkaliphilus oremlandii OhILAs] gi|158141133|gb|ABW19445.1| hypothetical protein Clos_1905 [Alkaliphilus oremlandii OhILAs] Length = 281 Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 22/153 (14%), Positives = 54/153 (35%), Gaps = 1/153 (0%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 K R K + N D++ + G + + DP++ + + Sbjct: 125 KKAKDRKNKIRLELCNIQDVMYFQNKIGTSEDIILTYAAEIAKDPLKEPLEYLAAAPKIK 184 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S+ +S+ + + + E+ + I Q Q G+++E S++++ K ++ K++ Sbjct: 185 KSVEDSLENLRKVSDVVELQS-FSFILQQRQETGSVAENHKAQSQMMKRNKRLRRKIKRQ 243 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 K + + L + L Sbjct: 244 YKRTKLIVASLMLFTCYILLLTVPLFAEALRSL 276 >gi|322368727|ref|ZP_08043294.1| flagellar assembly protein J [Haladaptatus paucihalophilus DX253] gi|320551458|gb|EFW93105.1| flagellar assembly protein J [Haladaptatus paucihalophilus DX253] Length = 576 Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 23/180 (12%), Positives = 62/180 (34%), Gaps = 4/180 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 K L +R + D + + A + ++ ++ + E +R+++ Sbjct: 84 KLLRDRRRKQIEDRLHLFITHMTVLSTANMDRVQVFRILSEEAEYKELALEMQRIVQLVD 143 Query: 61 -LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 SL +++ + +P + +S F ++ GG + + L + ++ + Sbjct: 144 TWNQSLDDALQIRAKKVPSKPLSDFFDRLAYTIGSGGEIQDFLLSEQDVVIQNYVTIYEG 203 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++E ++ L + + P G +++ A M G + M Sbjct: 204 SLRNLEVMKDLYLSMILSVTFALVFATVLPILTGTNPTMTVGAVVVMFAFVQM--GFLFM 261 >gi|237738597|ref|ZP_04569078.1| general secretion pathway protein F [Fusobacterium sp. 2_1_31] gi|229424080|gb|EEO39127.1| general secretion pathway protein F [Fusobacterium sp. 2_1_31] Length = 345 Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 21/155 (13%), Positives = 63/155 (40%), Gaps = 7/155 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +++GL + A+ +I+ + + +++ H L++ ++I + Sbjct: 11 FTNELALLIKSGLTFTKAIEIILKEEKNKKFK---DILKKIHKNLTMGKNIYDSFKPFEN 67 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 S + ++ + G N+ E+L ++S+ L + + K+ + + ++ Sbjct: 68 TFGSTYLYILKIGELSG-NIVESLEDISKSLDFDLSQRKKLGGILIYPI---VVVCLTFL 123 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 VS L+ F P ++ + + L+ + Sbjct: 124 IVSFLLIFILPSFITIFEENQIELPLVTRILLGIS 158 >gi|149177767|ref|ZP_01856367.1| type IV pilus assembly protein PilC [Planctomyces maris DSM 8797] gi|148843417|gb|EDL57780.1| type IV pilus assembly protein PilC [Planctomyces maris DSM 8797] Length = 411 Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 21/159 (13%), Positives = 41/159 (25%), Gaps = 8/159 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 D + RA LP+S + + + +RS + + G L ++ Sbjct: 75 DHLSDLTRARLPLSTGLEAVSYEIESPRLRSAVQNLASQLDAGNDLETVLADSRA----- 129 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + G +SE LA+ R MK ++ + Sbjct: 130 --PRELCALVHAGTRSGKMSEILADYVAHTRQISEMKNQLLMALSYPLILMAFAMLMFLS 187 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + + G L + L Sbjct: 188 IMLWILPAFESIYREFGIELPGMTLRLFELSLFLRTQWW 226 >gi|297587794|ref|ZP_06946438.1| pilin biogenesis protein [Finegoldia magna ATCC 53516] gi|297574483|gb|EFH93203.1| pilin biogenesis protein [Finegoldia magna ATCC 53516] Length = 363 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 23/159 (14%), Positives = 58/159 (36%), Gaps = 10/159 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 L + A +P+ + + ++ Q ++ +V E + G+S+SES + Sbjct: 29 FLRQFSILLNAKIPIIEIINLLKEQKEFKQLKPSLDKVSENLNNGMSVSESFAN------ 82 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + F T + + G L + + +LS+ ++ KVQ + + + Sbjct: 83 DKNFDMFFTSMIKLGEESGRLDKVVYDLSKYYERTYDINKKVQNAMIYPI---ILTVTGI 139 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + ++ P ++++ + L + I Sbjct: 140 VMLIFMLKNVIPTFVDLFESSDMVLPLSTRILISVSTAI 178 >gi|169823948|ref|YP_001691559.1| putative pilin biogenesis protein [Finegoldia magna ATCC 29328] gi|167830753|dbj|BAG07669.1| putative pilin biogenesis protein [Finegoldia magna ATCC 29328] Length = 363 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 22/156 (14%), Positives = 56/156 (35%), Gaps = 10/156 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 L + A +P+ + + ++ Q ++ +V E + GLS+SES Sbjct: 29 FLRQFSILLNAKIPIIEIINLLKEQKEFKQLKPSLDKVSENLNNGLSVSESF------CG 82 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + F T + + G L + + +LS+ ++ K+Q + + + Sbjct: 83 DKNFDMFFTSMMKLGEESGRLDKVVYDLSKYYERTYDINKKIQNAMIYPI---ILTVTGI 139 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + ++ P ++++ + L + Sbjct: 140 VMLIFMLKNVIPTFVDLFESSDMVLPLSTRILISVS 175 >gi|119715779|ref|YP_922744.1| type II secretion system protein [Nocardioides sp. JS614] gi|119536440|gb|ABL81057.1| type II secretion system protein [Nocardioides sp. JS614] Length = 300 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 59/154 (38%), Gaps = 1/154 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR A+F LD++ S++AG S+A+ + + + I+ Sbjct: 146 LMDKAKKRRAEFRRTLSVYLDLVAMSMQAGRGHSEALPASAAIGTGWAFTHLQDAIDGAR 205 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + ++ ++ ++E++ + +++ ++ G + L + LR + A+ Sbjct: 206 FSGTTPWHALGQLGDRFGIRELTDLDSALTLANEDGAKVRATLVARAETLRAERIADAEA 265 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153 A +I + ++ +Y + Sbjct: 266 AAAQATESMRFALIVMVFAFLTYELYPSVARLFA 299 >gi|223986753|ref|ZP_03636738.1| hypothetical protein HOLDEFILI_04061 [Holdemania filiformis DSM 12042] gi|223961274|gb|EEF65801.1| hypothetical protein HOLDEFILI_04061 [Holdemania filiformis DSM 12042] Length = 344 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 21/162 (12%), Positives = 54/162 (33%), Gaps = 12/162 (7%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + +GL D + V+ D + ++ LG +L++S+ R Sbjct: 12 LCQQLSMMISSGLSAEDGLGVVANDQPDAGLHDALLKIKNEMELGETLADSLER------ 65 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + + G L + L L++ + + ++ ++ ++ + Sbjct: 66 TEAFDAYMIRMVRIGEQTGYLDQVLDALAQYYQRMEKIRINLKNALTYPLILLIMVMVVV 125 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + V + L G L A M G +++ Sbjct: 126 GVILFKVLPVFDEVLRNL-----GVSLTVPAQVLMQAGTVLI 162 >gi|303234414|ref|ZP_07321053.1| type II secretion system F domain protein [Finegoldia magna BVS033A4] gi|302494530|gb|EFL54297.1| type II secretion system F domain protein [Finegoldia magna BVS033A4] Length = 363 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 22/156 (14%), Positives = 56/156 (35%), Gaps = 10/156 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 L + A +P+ + + ++ Q ++ +V E + GLS+SES Sbjct: 29 FLRQFSILLNAKIPIIEIINLLKEQKEFKQLKPSLDKVSENLNNGLSVSESF------CG 82 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + F T + + G L + + +LS+ ++ K+Q + + + Sbjct: 83 NKNFDMFFTSMMKLGEESGRLDKVVYDLSKYYERTYDINKKIQNAMIYPI---ILTVTGI 139 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + ++ P ++++ + L + Sbjct: 140 VMLIFMLKNVIPTFVDLFESSDMVLPLSTRILISVS 175 >gi|308235609|ref|ZP_07666346.1| hypothetical protein GvagA14_05194 [Gardnerella vaginalis ATCC 14018] Length = 212 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 51/128 (39%) Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 + +LS VR + +V + S +G ++++ + +S K + Sbjct: 71 RCSNRIKNLSARQRSKVRKDMRKVAQSLMSVYELSSSIGCSMTDCVQAVSDSYHANKRVN 130 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + KA+ ++ +LPF + ++ RG+ LLG+ F +IG+ Sbjct: 131 DLSSEVFAMPKATIRLLTALPFLALLTGQLLGVNPILMIFTSSRGYALLGIGLLFYVIGL 190 Query: 177 MVMRLMIN 184 + + ++ Sbjct: 191 LWVTWIMK 198 >gi|262200534|ref|YP_003271742.1| type II secretion system F domain-containing protein [Gordonia bronchialis DSM 43247] gi|262083881|gb|ACY19849.1| Type II secretion system F domain protein [Gordonia bronchialis DSM 43247] Length = 264 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 60/184 (32%), Gaps = 9/184 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-----RRVIETQ 59 +R AL +++ + G P + A V V + + Sbjct: 79 ADRRIDDMTR----ALSMMISELSVGTPPNRAAQVAVVELRRRGGDCQVADGLEGMACRA 134 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 LG ++ ++ + + G +++ L L L R+ + Sbjct: 135 ELGGAVIDAAEKWDATWGPVSWQRIGVAWQTAERHGLPMADLLGALRSDLLARRAFVDRT 194 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +A +A+A ++ LP L T + VL+ G +LL + + G++ Sbjct: 195 RAGLAGPRATALVLAGLPVLGIALGQATGARPLGVLLGGGIGGLLLVIGTSLAATGLVWT 254 Query: 180 RLMI 183 + Sbjct: 255 ERLT 258 >gi|220913901|ref|YP_002489210.1| hypothetical protein Achl_3160 [Arthrobacter chlorophenolicus A6] gi|219860779|gb|ACL41121.1| conserved hypothetical protein [Arthrobacter chlorophenolicus A6] Length = 271 Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 35/103 (33%) Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 S + + G L++ L + L + A Q KA+ ++ LP Sbjct: 160 WSELAACFDIAEASGCPLADVLTRFAAQLEVESDADAARQTALAGPKATVTLLTWLPLMG 219 Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 L + +L+ P G L AA + G + ++ Sbjct: 220 LGLGMALGVDPLAMLLGTPLGLAALLGGAALTVAGRLWSARLV 262 >gi|119963307|ref|YP_949041.1| type II secretion system protein F [Arthrobacter aurescens TC1] gi|119950166|gb|ABM09077.1| putative bacterial type II secretion system protein F domain [Arthrobacter aurescens TC1] Length = 305 Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 19/137 (13%), Positives = 46/137 (33%), Gaps = 7/137 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L+++ + AG + A+ +I +S P+R R V+ +G + Sbjct: 170 MLELVASMLDAGAGIGRALELIAKCASPPIRQSLRPVVAALAIGADWETAWRT--PTRQP 227 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME-----AKASAWII 133 EV ++ + G + L + R + A+ +A ++ + Sbjct: 228 PEVVRLKDALAFAALTGAPSASILYAQAARERREQFRAAEKRAAALGVKLVVPLGLCSLP 287 Query: 134 GSLPFCVSTLVYFTSPG 150 + + ++ P Sbjct: 288 AFICLGIVPVLIAMLPS 304 >gi|306835046|ref|ZP_07468091.1| membrane protein [Corynebacterium accolens ATCC 49726] gi|304569071|gb|EFM44591.1| membrane protein [Corynebacterium accolens ATCC 49726] Length = 259 Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 20/182 (10%), Positives = 59/182 (32%), Gaps = 1/182 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 + + + + ++ +RAG ++ A++ + +E+ + Sbjct: 74 MAARTRRRGREALAGYFGVVTADLRAGATLASALSRGAESLPATTPRDMSAALESTATAV 133 Query: 64 SL-SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + + E++ ++ + +Q G ++ + + A Sbjct: 134 ARGAPPHVALSGAHADAELTRLGHLLELSTQHGIGVASLFEQAQSRMDALRRHHQSTAAG 193 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 +A+A ++ LP + + L+ G +LL + G R++ Sbjct: 194 LQGPQATATVLACLPIAGIAMGGAMGANSLGFLLGGGLGGILLVIGVGLACGGFAWSRVI 253 Query: 183 IN 184 I Sbjct: 254 IR 255 >gi|311113937|ref|YP_003985158.1| hypothetical protein HMPREF0421_20049 [Gardnerella vaginalis ATCC 14019] gi|310945431|gb|ADP38135.1| hypothetical protein HMPREF0421_20049 [Gardnerella vaginalis ATCC 14019] Length = 222 Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 51/128 (39%) Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 + +LS VR + +V + S +G ++++ + +S K + Sbjct: 81 RCSNRIKNLSARQRSKVRKDMRKVAQSLMSVYELSSSIGCSMTDCVQAVSDSYHANKRVN 140 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + KA+ ++ +LPF + ++ RG+ LLG+ F +IG+ Sbjct: 141 DLSSEVFAMPKATIRLLTALPFLALLTGQLLGVNPILMIFTSSRGYALLGIGLLFYVIGL 200 Query: 177 MVMRLMIN 184 + + ++ Sbjct: 201 LWVTWIMK 208 >gi|223940800|ref|ZP_03632633.1| type II secretion system protein [bacterium Ellin514] gi|223890530|gb|EEF57058.1| type II secretion system protein [bacterium Ellin514] Length = 328 Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 58/154 (37%), Gaps = 8/154 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 D+F + +R G+P+ A+ + D +++E + + GLSL +++ Sbjct: 4 DEFAFFNQQLAAMLREGIPLEGALHRLSADMRDKRLQTEIQLLEGDLRNGLSLRDALKA- 62 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 +++ F + + G +L L ++ + + +++ L + Sbjct: 63 ------RKLPDFYVQMLMVGVNGNDLLGVLLLVADYYQRANTIWTRLKGLLVYPLIVLIA 116 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 +L ++ L + + L P M++ Sbjct: 117 AFALSTFITILGTWLIGSDNSGLFQTPIPPMIMI 150 >gi|257464504|ref|ZP_05628875.1| pili/fimbriae biogenesis protein [Actinobacillus minor 202] gi|257450164|gb|EEV24207.1| pili/fimbriae biogenesis protein [Actinobacillus minor 202] Length = 398 Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 66/183 (36%), Gaps = 17/183 (9%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLSESISR 71 ++ L + V+A +P+ A+A+I+ + + + LG + S ++ + Sbjct: 57 SEEITQVLSQLAMLVKAKIPLKSALAMILENCTQIKIYLWLEALIKWIELGYAFSMALEK 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 +Y+P QE + ++ G L L N+++ ++++ KV+ + Sbjct: 117 SEKYIPQQE-----IQLIKMGEISGKLETILQNIAKARKEKETTLKKVKKILFYPIVVLT 171 Query: 132 IIGSLPFCVSTLVYFTS-----------PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I SL + + P +L + F I IM++ Sbjct: 172 ISFSLSIGLLLFIVPQFAELYSAKEKSLPMITEILFSLSAFLQEYISEFIFFFIVIMLLF 231 Query: 181 LMI 183 I Sbjct: 232 RFI 234 >gi|284989192|ref|YP_003407746.1| Type II secretion system F domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284062437|gb|ADB73375.1| Type II secretion system F domain protein [Geodermatophilus obscurus DSM 43160] Length = 237 Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 53/146 (36%), Gaps = 6/146 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D P A D++ + AGLPV A+A + + P+ E V LG + + + + Sbjct: 97 EADLPVACDLLAVCLEAGLPVGGALAAVAAALAGPLGPELTTVAGLYRLGAAPRRAWADV 156 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 E++ V+ + G + AL +L+ R + +A A + Sbjct: 157 PA-----ELAVLGRVLVRAGESGSTVVPALRSLAGDARAEQRSRADAAVRRAGVWVLAPL 211 Query: 133 -IGSLPFCVSTLVYFTSPGYMNVLIN 157 + LP + V G + Sbjct: 212 GVCFLPAFLCLGVVPLVLGIAADVFG 237 >gi|154482609|ref|ZP_02025057.1| hypothetical protein EUBVEN_00276 [Eubacterium ventriosum ATCC 27560] gi|149736509|gb|EDM52395.1| hypothetical protein EUBVEN_00276 [Eubacterium ventriosum ATCC 27560] Length = 478 Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 18/163 (11%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS---------- 50 +K +KKR + D+P L I+ AGL + ++ IV Q D + Sbjct: 315 LKSEVKKRNIQLQFDYPEILSKILLYSNAGLSIKSSIERIVRQYEDEKKKNPKEYHYAYE 374 Query: 51 EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-----LSEALANL 105 E + G+S +I++ L + +I + G L L Sbjct: 375 ELKMATVKMKSGVSEINAINQYGERCGLHNYIKLANIIEQNIRRGTGELSFALENELNR- 433 Query: 106 SRILRDRKNMKA--KVQALSMEAKASAWIIGSLPFCVSTLVYF 146 + + R +K ++ + I+ + V L+ Sbjct: 434 ALVERKNTALKRGSEISTKLLGPMTVMLIVALVILMVPALMSI 476 >gi|170721966|ref|YP_001749654.1| type II secretion system protein [Pseudomonas putida W619] gi|169759969|gb|ACA73285.1| type II secretion system protein [Pseudomonas putida W619] Length = 396 Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 57/168 (33%), Gaps = 8/168 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65 +R F + + AGLP+ DA+ + ++ R ++ + G SL Sbjct: 53 RRQVAFDLLL--FSQELTTLLHAGLPLIDALESLAEKAPTAATRKVLAALVGQLYEGRSL 110 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S+++++ R P + S+ G L +AL + ++ K+ S+ Sbjct: 111 SQALAQQPRIFPP-----LYVALVQSSERTGALGDALHRYIGYRQRLDLVRQKLVGASVY 165 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + G + + V + ++ + + L Sbjct: 166 PLLLLLVGGGVVLFLLGYVVPRFSLVFEGMGSELPWLSRMLMQIGLFL 213 >gi|302559338|ref|ZP_07311680.1| integral membrane protein [Streptomyces griseoflavus Tu4000] gi|302476956|gb|EFL40049.1| integral membrane protein [Streptomyces griseoflavus Tu4000] Length = 368 Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 39/133 (29%), Gaps = 3/133 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 P A D++ + AG A + PV R LG + + R+ Sbjct: 222 RQLPLAADLLSACIAAGAGPVLAAQAVGETLGGPVGEALARGAAEVRLGGEPAAAWHRLA 281 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + ++ G L+ + L+ R A +A SA + Sbjct: 282 ---SVPGAAALARLLERADVSGLPLAAPVGRLAAEARAEWTRAATARARRAAVMVSAPVG 338 Query: 134 GSLPFCVSTLVYF 146 T+ Sbjct: 339 LCFLPAFITVGVV 351 >gi|254483289|ref|ZP_05096521.1| Bacterial type II secretion system protein F domain [marine gamma proteobacterium HTCC2148] gi|214036512|gb|EEB77187.1| Bacterial type II secretion system protein F domain [marine gamma proteobacterium HTCC2148] Length = 296 Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 54/139 (38%), Gaps = 1/139 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R+ P ALD+ V + G + + + I Q+ + E R + Sbjct: 141 LDSNATQRSRLIYRRIPYALDLSVLVLETGGTLREGLEEISLQNDP-LAEELRITLLEMD 199 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + + ++ M + + L+ + T I+ + G + L + + R+R+ + + Sbjct: 200 SGSTQAAALRGMGQRVGLESLETILTAINRGEETGAPMVATLITQAEMFRERRLQEIEKM 259 Query: 121 ALSMEAKASAWIIGSLPFC 139 A+ K + + + Sbjct: 260 AVEAPTKMTFPNMMIMVSV 278 >gi|118586742|ref|ZP_01544179.1| comG operon protein 2 [Oenococcus oeni ATCC BAA-1163] gi|118432830|gb|EAV39559.1| comG operon protein 2 [Oenococcus oeni ATCC BAA-1163] Length = 379 Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 19/196 (9%), Positives = 57/196 (29%), Gaps = 23/196 (11%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57 ++ K L ++ + +++G ++ A + I +SS Sbjct: 42 LQKYTKSTKKLPRRQQVEFLSLLGQLIQSGYSINQATNFIQQISRESS------------ 89 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L+L + + + ++ + GNL + L L+ + Sbjct: 90 -WVKNLNLELAKGKNFAFAIKPYLNNSLNFQIGMADRYGNLEKILLQLADFSEKCLKQEN 148 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY-----MNVLINDPRGHMLLGVAAAFM 172 K++ + +++ + V + + ++ + +L V + Sbjct: 149 KIKQILRYPLVLVFLLIGIAVAVKIFLLPILSSWSNQQRVDFVDEYFWFKVLGVVLMTLL 208 Query: 173 LIGIMV--MRLMINFD 186 + + M Sbjct: 209 FLFYRWQSFKKMSKLK 224 >gi|311697136|gb|ADQ00008.1| type II secretion system protein-like protein [marine bacterium HP15] Length = 290 Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 16/141 (11%), Positives = 52/141 (36%), Gaps = 5/141 (3%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL---SLSESISRMVR 74 + V AGL ++ +I Q+ + + RR+ + + ++ + + Sbjct: 147 ELCQMTRMLVEAGLSPERSLKLISHQARELMPRLIRRIDRFNRVMESGADRTVALDELGK 206 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 L + + +++ LG ++ L + + + K + + A+ + ++ Sbjct: 207 NRNLTVLRNYVSLMKQSGTLGSKVAGGLDQIVEEAQHEERSNLKEETNKIGARMTVIMMV 266 Query: 135 SLPFCVSTLVYFTSPGYMNVL 155 + + L+ P + ++ Sbjct: 267 FMLPSLFLLIG--GPAVLAIM 285 >gi|262066832|ref|ZP_06026444.1| general secretion pathway protein F [Fusobacterium periodonticum ATCC 33693] gi|291379444|gb|EFE86962.1| general secretion pathway protein F [Fusobacterium periodonticum ATCC 33693] Length = 345 Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 21/155 (13%), Positives = 63/155 (40%), Gaps = 7/155 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +++GL + A+ +I+ + + +++ H L++ ++I + Sbjct: 11 FTNELALLIKSGLTFTKAIEIILKEEKNKKFK---DILKKIHKNLTIGKNIYDSFKPFEN 67 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 S + ++ + G N+ E+L ++S+ L + + K+ + + +I Sbjct: 68 TFGSTYLYILKIGELSG-NIVESLEDISKSLDFDLSRRKKLGGILIYPI---VVICLTFL 123 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 VS L+ + P ++ + + L+ + Sbjct: 124 IVSFLLIYILPSFITIFEENQIELPLVTRILLSIS 158 >gi|330962485|gb|EGH62745.1| general secretion pathway protein F [Pseudomonas syringae pv. maculicola str. ES4326] Length = 324 Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 61/151 (40%), Gaps = 11/151 (7%) Query: 29 AGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87 AG P+ A+A+ QS + S ++E G SLS ++ + S F Sbjct: 1 AGQPLESALALQARQSDRPAMASLLNGLLERVKGGSSLSVAMGA-----EHRTFSNFYLS 55 Query: 88 ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 + + G L E L+ L+ L + M++ + + + +++ + + L+ + Sbjct: 56 LVRAGEAAGMLGETLSQLATNLERSRAMRSDLISALIYPA---FLVCGVFGSLVLLLTYV 112 Query: 148 SPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 P ++ + + L+ M +GI + Sbjct: 113 VPQFVPIFRDLNVPLPLITECI--MALGIFL 141 >gi|167755633|ref|ZP_02427760.1| hypothetical protein CLORAM_01148 [Clostridium ramosum DSM 1402] gi|167704572|gb|EDS19151.1| hypothetical protein CLORAM_01148 [Clostridium ramosum DSM 1402] Length = 342 Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 18/142 (12%), Positives = 48/142 (33%), Gaps = 7/142 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + + + +G ++ V ++ + D + V + +S SE+I Sbjct: 11 FCNQMAMILESGFSLNQGVTMVYEEMDDKNIKGVLQEVAKYLDEQVSFSEAIDL------ 64 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + + GNL + + +LS ++ K++ ++ + Sbjct: 65 TKAFDDYMVNLVKVGETSGNLDDVMQSLSEYYARIDDITNKLKQALTYPIILIIMMVVVV 124 Query: 138 FCVSTLVYFTSPGYMNVLINDP 159 + V +N L +D Sbjct: 125 GIIVFKVLPIFKDVLNGLGSDL 146 >gi|300697013|ref|YP_003747674.1| type II secretion system protein F (gspF) [Ralstonia solanacearum CFBP2957] gi|299073737|emb|CBJ53258.1| putative type II secretion system protein F (gspF) [Ralstonia solanacearum CFBP2957] Length = 399 Score = 44.3 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 72/188 (38%), Gaps = 15/188 (7%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +K R K + +RAGL VS+A+ + + P +RR+ + GL Sbjct: 54 KLKSRRRKVDAGL--VCIELGGLLRAGLTVSEALDSLAHRDDHPNVDVYRRLYDGLLSGL 111 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 LSE++ ++ P ++ G + +AL ++ + ++ ++ KV + + Sbjct: 112 PLSEAMKQVEGIFPG-----ILVAAIQANERSGRIPDALDEYAKYAQAQEALRKKVVSAA 166 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMN--VLINDPRGHMLLGVAAAF------MLIG 175 + + + V + + +LL V +L+G Sbjct: 167 VYPATVIGFGLLVVLFLLAYVIPRFAMVYDGTAMQMSGPTRILLAVGHFIHEQGWGLLVG 226 Query: 176 IMVMRLMI 183 I+++ +++ Sbjct: 227 IVLLGVIV 234 >gi|207723663|ref|YP_002254061.1| type II secretory pathway, gspf-related protein [Ralstonia solanacearum MolK2] gi|206588867|emb|CAQ35829.1| type II secretory pathway, gspf-related protein [Ralstonia solanacearum MolK2] Length = 400 Score = 44.3 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 47/147 (31%), Gaps = 7/147 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + AG+ V DA+ + R E V+ L + Sbjct: 67 FARELAALLDAGVSVIDALRTLG----SNERREASAVVYRDLLRRLEEGHALSQALALAD 122 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 S+ G L+ +L S + ++ +V + S+ + GS+ Sbjct: 123 DVFPPVLVACVKASEQTGGLAASLKRYSHNSAALQALRTRVVSASIYPAVLLAVGGSVAV 182 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLL 165 L+ F P + +L + R LL Sbjct: 183 ---FLLAFVVPRFAGLLEHSGRELPLL 206 >gi|325109358|ref|YP_004270426.1| type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] gi|324969626|gb|ADY60404.1| Type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] Length = 337 Score = 44.3 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 49/166 (29%), Gaps = 7/166 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + D++ +VR P+ DA+ + + R + V++ G SLS +++ Sbjct: 8 ELVEFNDMLAGTVRGNAPLPDAIRLAQEGAGRRQRELQQFVLDRLERGQSLSAALAERPD 67 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + G +L L SR L ++ + + I Sbjct: 68 LFDPR-----YQQVVAAGEEGNHLGAVLEAFSRYLWQLIELRRSLSRALLYPLLVTCIGY 122 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L V + + +L + + Sbjct: 123 VLFVFVGGITTSRFVSFYRD--TPMPLTPVLSALNVVYSNILYWVW 166 >gi|224826461|ref|ZP_03699563.1| type II secretion system protein [Lutiella nitroferrum 2002] gi|224601562|gb|EEG07743.1| type II secretion system protein [Lutiella nitroferrum 2002] Length = 396 Score = 44.3 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 19/147 (12%), Positives = 47/147 (31%), Gaps = 6/147 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 ++ + AGL + +A+ + + R R+I+ + G +LS ++ + Sbjct: 59 QLLLFTQELLSLLEAGLALVEAIEALNEKEPRPESRRVLERLIQRLYEGQTLSVALQQFP 118 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 P S+ G+L +AL ++ K+ S+ + Sbjct: 119 DIFPP-----LYLATVRASEKTGDLEDALGRYVAYQTQADLVRKKMINASIYPGLLVTVG 173 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR 160 + + + V + + Sbjct: 174 CLVLVFLLSYVVPRFAHVYEAMGTELP 200 Score = 43.2 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 15/134 (11%), Positives = 39/134 (29%), Gaps = 6/134 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 ++ + G PV A+ ++ G +R + + G S+S ++S Sbjct: 262 QLARFYRMLGMLLTGGTPVVQALGMVSGLLQASLREQLLQAARDIREGRSISLAMSSNGL 321 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + G + + ++ + + E A+I Sbjct: 322 TT------SVALRMLRVGERTGQMGGMMERIASFYEEEMAQAVERFTRLFEPALMAFIGL 375 Query: 135 SLPFCVSTLVYFTS 148 + V + Sbjct: 376 VIGGVVILMYLPIF 389 >gi|126208354|ref|YP_001053579.1| fimbrial biogenesis protein [Actinobacillus pleuropneumoniae L20] gi|126097146|gb|ABN73974.1| fimbrial biogenesis protein [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 400 Score = 44.3 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 18/155 (11%), Positives = 56/155 (36%), Gaps = 9/155 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71 + + + + A +P+ A+ +++ + + + G ++S S+++ Sbjct: 57 SESITQVIKQLALLLNAAVPLKQALNMLLENTYHIRIYMWLNDLNRLIESGYTMSSSLTK 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + Y+ E + + G L E L N++ + + K++ + + Sbjct: 117 LNLYLAKSE-----IQLVRIGEQSGRLGEILQNIAVNRHQTEKLHKKIKKIMFYPVVTLI 171 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 I +L + + P ++ + + L+ Sbjct: 172 ISVALSLAMLLFIV---PQFIELYSGREKALPLIT 203 >gi|237734380|ref|ZP_04564861.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229382610|gb|EEO32701.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 342 Score = 44.3 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 18/142 (12%), Positives = 48/142 (33%), Gaps = 7/142 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + + + +G ++ V ++ + D + V + +S SE+I Sbjct: 11 FCNQMAMILESGFSLNQGVTMVYEEMDDKNIKGVLQEVAKYLDEQVSFSEAIDL------ 64 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + + GNL + + +LS ++ K++ ++ + Sbjct: 65 TKAFDDYMVNLVKVGETSGNLDDVMQSLSEYYARIDDITNKLKQALTYPIILIIMMVVVV 124 Query: 138 FCVSTLVYFTSPGYMNVLINDP 159 + V +N L +D Sbjct: 125 GIIVFKVLPIFKDVLNGLGSDL 146 >gi|330815460|ref|YP_004359165.1| Type IV pilus biogenesis protein PilC [Burkholderia gladioli BSR3] gi|327367853|gb|AEA59209.1| Type IV pilus biogenesis protein PilC [Burkholderia gladioli BSR3] Length = 402 Score = 44.3 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 49/166 (29%), Gaps = 8/166 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISR 71 + + +RAGLP++ A+ ++ + + G LSE++ Sbjct: 62 SREITRFAQQLSGLLRAGLPLAPALDLLAEAGGRRDLGRIAAGLARAIGAGRQLSEAMRH 121 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 R + + G L+ LA L+ +A+V+ A Sbjct: 122 YPRQFDP-----MFRQLIAVGEASGQLAPLLARLAEDRERGAAQRARVRGALAYPLAVLG 176 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIG 175 + + V T +L ++ M+ G Sbjct: 177 FALLITVALLAWVVPTFAQVFEGFGATLPAPTRFVLALSDGLMVFG 222 >gi|315650392|ref|ZP_07903463.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] gi|315487319|gb|EFU77630.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] Length = 409 Score = 44.3 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 48/132 (36%), Gaps = 11/132 (8%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----------PVRSE 51 + ++KR + L D+P+ + ++ + AGL V + IV E Sbjct: 248 RQKLEKRKRELLKDYPDIVSKLIVFIGAGLSVRQSWEGIVKDYESENKEKRYAKRYAYEE 307 Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANL-SRILR 110 + + G + R L++ ++++ + G + L N+ ++ Sbjct: 308 MSKSLARLKTGTQENIVYKDFGRSCLLRQYMKLASLLEQNRKSGISGLSTLLNMEAQSAW 367 Query: 111 DRKNMKAKVQAL 122 + + AK + Sbjct: 368 EERLNLAKREGE 379 >gi|327392739|dbj|BAK10161.1| protein transport protein HofC [Pantoea ananatis AJ13355] Length = 399 Score = 44.3 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 19/178 (10%), Positives = 49/178 (27%), Gaps = 11/178 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 M+ K K + + + ++AGLP+S +++++ S ++ Sbjct: 51 MRRRDWKWQHKI-----DLIRQLATLLKAGLPLSQSLSLLAEGHSQTPWRALMLALQ--- 102 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L+ Q + +L G L L+ ++++++KV Sbjct: 103 -HQILAGEPFSSALRQWPQIFPPLYPALMEVGELTGQLDVCCEQLALQQTRQQHLRSKVI 161 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA--FMLIGI 176 + ++ + V + + G Sbjct: 162 KALRYPLFILAVALTVTCGMLLFVLPEFVSVYASFNAPLPAFTAAVIGLSERLQAWGF 219 >gi|303251262|ref|ZP_07337440.1| protein transport protein HofC-like protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252505|ref|ZP_07534401.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302649804|gb|EFL79982.1| protein transport protein HofC-like protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860097|gb|EFM92114.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 400 Score = 44.3 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 19/176 (10%), Positives = 61/176 (34%), Gaps = 11/176 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71 + + + + A +P+ A+ +++ + + + G ++S S+++ Sbjct: 57 SESITQVIKQLALLLNAAVPLKQALNMLLENTYHIRIYMWLNDLNRLIESGYTMSSSLTK 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + Y+ E + + G L E L N++ + + K++ + + Sbjct: 117 LNLYLAKSE-----IQLVRIGEQSGRLGEILQNIAVNRHQTEKLHKKIKKIMFYPVVTLI 171 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 I +L + + P ++ + R L + + + ++ + Sbjct: 172 ISVALSLAMLLFIV---PQFIELY--SGREKPLPLITQMLFTLSHFLQHSLLQVTI 222 >gi|165976299|ref|YP_001651892.1| protein transport protein HofC-like protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876400|gb|ABY69448.1| protein transport protein HofC-like protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 400 Score = 44.3 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 19/176 (10%), Positives = 61/176 (34%), Gaps = 11/176 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71 + + + + A +P+ A+ +++ + + + G ++S S+++ Sbjct: 57 SESITQVIKQLALLLNAAVPLKQALNMLLENTYHIRIYMWLNDLNRLIESGYTMSSSLTK 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + Y+ E + + G L E L N++ + + K++ + + Sbjct: 117 LNLYLAKSE-----IQLVRIGEQSGRLGEILQNIAVNRHQTEKLHKKIKKIMFYPVVTLI 171 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 I +L + + P ++ + R L + + + ++ + Sbjct: 172 ISVALSLAMLLFIV---PQFIELY--SGREKPLPLITQMLFTLSHFLQHSLLQVTI 222 >gi|150016556|ref|YP_001308810.1| type II secretion system protein [Clostridium beijerinckii NCIMB 8052] gi|149903021|gb|ABR33854.1| type II secretion system protein [Clostridium beijerinckii NCIMB 8052] Length = 371 Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 9/154 (5%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQH 60 K IK + + + + + G+ +++A+ ++ S + + V+E Sbjct: 23 KKRIKFKHKVNEEQLALISGSLAQIYKDGIRITEALDLVADILSSKIYKDSLYGVLELIK 82 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SLS+ S P F I + G L E L LS +K +++ Sbjct: 83 QGSSLSQGFSEFKDLYP-----EFFIGIISIGENTGKLYEVLKGLSVYYDKSLFIKKEIK 137 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + +I S+ LV P + + Sbjct: 138 NACIYPM---FIFISMILLSIFLVNEVIPNFFEI 168 >gi|46143867|ref|ZP_00204586.1| COG1459: Type II secretory pathway, component PulF [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|303252876|ref|ZP_07339035.1| protein transport protein HofC-like protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247866|ref|ZP_07529902.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250118|ref|ZP_07532080.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|39932991|gb|AAR32669.1| type IV pilin biogenesis protein [Actinobacillus pleuropneumoniae] gi|302648306|gb|EFL78503.1| protein transport protein HofC-like protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855668|gb|EFM87835.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857849|gb|EFM89943.1| Fimbrial bioproteinsis protein [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 400 Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 19/176 (10%), Positives = 61/176 (34%), Gaps = 11/176 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71 + + + + A +P+ A+ +++ + + + G ++S S+++ Sbjct: 57 SESITQVIKQLALLLNAAVPLKQALNMLLENTYHIRIYMWLNDLNRLIESGYTMSSSLTK 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + Y+ E + + G L E L N++ + + K++ + + Sbjct: 117 LNLYLAKSE-----IQLVRIGEQSGRLGEILQNIAVNRHQTEKLHKKIKKIMFYPVVTLI 171 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 I +L + + P ++ + R L + + + ++ + Sbjct: 172 ISVALSLAMLLFIV---PQFIELY--SGREKPLPLITQMLFTLSHFLQHSLLQVTI 222 >gi|296242113|ref|YP_003649600.1| type II secretion system F domain-containing protein [Thermosphaera aggregans DSM 11486] gi|296094697|gb|ADG90648.1| Type II secretion system F domain protein [Thermosphaera aggregans DSM 11486] Length = 581 Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 17/139 (12%), Positives = 49/139 (35%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R ++ + +V + GLP ++ + + +++ LG+SL + Sbjct: 373 REYTIINGITRFIRDLVEVRKTGLPPEKSIIELSTRDYGVFSKYLKKISLELTLGVSLRK 432 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 I + + + +++ ++GG + L NL+ + ++A+ + Sbjct: 433 IIEELFKKIKPWRAKVLLFILTDSIEVGGGTVDVLENLAWFAESIEAIEAEKKRSMRTLM 492 Query: 128 ASAWIIGSLPFCVSTLVYF 146 ++ L + Sbjct: 493 IVPYLGAVLTAFTIVFMAV 511 Score = 40.9 bits (94), Expect = 0.075, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 66/184 (35%), Gaps = 5/184 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIET 58 + R + +FP + + V +GL A I+ S R V+ Sbjct: 91 SMVAGSRASAIDGEFPYTISYLSIMVMSGLSPYIAFERILKGSIIFQKTGELAQRFVLLN 150 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + LG + + + P V + + GG++ + L +R L + + K Sbjct: 151 KILGKDPLTAFAMLSDRNPSSRVRETLSGYISTVKAGGDVIDYLNKRARALFNDLLVSMK 210 Query: 119 VQALSMEAKASAWIIGSLPFCV-STLVYFTSPGYMNVL-INDPRGHMLLGVAAAFMLIGI 176 + A + +++ L + T++YF + Y V+ G M L + I I Sbjct: 211 IIADRLGGLLESYLAIVLLTMISFTVLYFVTASYSGVISFGIDTGTMSLLLYILMPFISI 270 Query: 177 MVMR 180 ++ Sbjct: 271 AIIY 274 >gi|258646630|ref|ZP_05734099.1| putative bacterial type II secretion system protein F domain protein [Dialister invisus DSM 15470] gi|260404051|gb|EEW97598.1| putative bacterial type II secretion system protein F domain protein [Dialister invisus DSM 15470] Length = 390 Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 61/173 (35%), Gaps = 13/173 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R A +++ + AG+PV++ + ++ G S + + T Sbjct: 50 VSLFKRRRLADLAEEWE-------SLLSAGIPVTETLDILGGGRSGKEKILLGEIKATIE 102 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S++ES + + P F T + +L G + E L + R + A ++ Sbjct: 103 AGHSIAESFAGSRAFPP------FFTALLQVGELSGTIPEQLRLAAACYRKEEEFIAGMK 156 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + + + + T++ + + L +A L Sbjct: 157 SALSYPVFVLFFSFLVFALILTVILPSFAALFDALDIPLPAVTRAALALGLFL 209 Score = 39.3 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 14/126 (11%), Positives = 36/126 (28%), Gaps = 6/126 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + +++G +SDA+A I + + E I+ + M Sbjct: 262 LSALLKSGKTLSDALADIADITDNSAVKEELLKIKKDIERGG------DFAQSMERSFGD 315 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + G L L + ++ + K +E ++ + + Sbjct: 316 TALARMIHVGMESGRLPLFLERSAHLMTEETKRKLTGFRKILEPSLLLFVGLVTAAIIFS 375 Query: 143 LVYFTS 148 ++ Sbjct: 376 VLLPVF 381 >gi|283835166|ref|ZP_06354907.1| protein transport protein HofC [Citrobacter youngae ATCC 29220] gi|291069467|gb|EFE07576.1| protein transport protein HofC [Citrobacter youngae ATCC 29220] Length = 400 Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 50/164 (30%), Gaps = 6/164 (3%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRY 75 + + ++AGL +S ++++ Q R + G+SLS S+S Sbjct: 61 AETIHQLATLLKAGLTLSTGLSLLAEQHPSSQWQALLRTLAYDMEQGISLSTSLS----- 115 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + +L G L + L+R + ++ + KV+ + Sbjct: 116 HWQHVFPPLYQAMIRTGELTGKLDDCCFELARQQKHQQQLADKVKKALRYPIIIITMAVM 175 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + F + V +A A+ + Sbjct: 176 VVFAMLQFVLPEFAAIYRTFNTPLPTLTRWIIAIAYYSRQWGWL 219 >gi|152964449|ref|YP_001360233.1| type II secretion system protein [Kineococcus radiotolerans SRS30216] gi|151358966|gb|ABS01969.1| type II secretion system protein [Kineococcus radiotolerans SRS30216] Length = 165 Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 6/94 (6%) Query: 1 MKHLIKKRTAKFLDD----FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF--RR 54 M++ + +R + P LD++ +V AGLP A+ V + E RR Sbjct: 1 MRNRLTQRRGSLRREPPVDVPLVLDLVAAAVEAGLPPGRALEAAVDALAGTGAEETALRR 60 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVI 88 V G S E+ + + + ++ Sbjct: 61 VAVQLSWGSSPEEAWRDLTGESERWDELAEALLL 94 >gi|296121549|ref|YP_003629327.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] gi|296013889|gb|ADG67128.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] Length = 347 Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 57/174 (32%), Gaps = 13/174 (7%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMP 77 + + +G+ + A+ + ++ D +R+I+ G LSE++ P Sbjct: 15 WCRSLSTLLHSGVALIRALELAGKRAGDQRFGPVTQRLIQEVRSGNGLSEALIAEGSTFP 74 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + GNL E L +L+ + M+ A A + Sbjct: 75 -----ALLVDMVSVGEQTGNLPEVLTSLAGHFDHQVQMRRTFIAAITWPVLQAVAAILIV 129 Query: 138 FCVSTLVYFTSP-------GYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + ++ + + V + G + A +L+ + MIN Sbjct: 130 AILIVVLGIVAQVTGSSPLDVLGVGLTGTTGAVAWLSGWAMLLVAGCIGWEMIN 183 >gi|311744547|ref|ZP_07718347.1| type II secretion system protein [Aeromicrobium marinum DSM 15272] gi|311312166|gb|EFQ82083.1| type II secretion system protein [Aeromicrobium marinum DSM 15272] Length = 232 Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 58/152 (38%), Gaps = 5/152 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++R A+ + P ALD++V ++ AG A AV+ + P+ E R + + Sbjct: 81 ARQRRQAEMVRLLPAALDLVVTALEAGRSPGGAFAVVADAAPAPLAEELRGLARRLEVAA 140 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + +VR ++ + G + +A ++ LR + +A++ S Sbjct: 141 DPLDVWDALVRD---PTLAPVGRALRRSEVTGMPAARVVARVADDLRRTR--RAEIAHRS 195 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + L F + + P + ++ Sbjct: 196 RSVGVATAAPLGLCFLPAFFLVGIVPTVVGMV 227 >gi|126459953|ref|YP_001056231.1| type II secretion system protein [Pyrobaculum calidifontis JCM 11548] gi|126249674|gb|ABO08765.1| type II secretion system protein [Pyrobaculum calidifontis JCM 11548] Length = 256 Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 75/191 (39%), Gaps = 20/191 (10%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESI 69 + P L ++ +V AG+ + +A V+ G P + FRRV+ +G ++ E++ Sbjct: 36 RLEGQIPQVLRMVADAVGAGMGLREAFEVVAGMGLYPANAVFRRVLSLAEVGGLAVDEAL 95 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL----ANLSRILRDRKNMKAKVQALSME 125 R+ +P F+ +++ ++ G L E L + + ++ R+ + ++++ Sbjct: 96 WRVASELPSPNFRRFALIVAEGARSGARLGEVLGVAARSFAVVVDFRRELWSQLRPYVAL 155 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-------------HMLLGVAAAFM 172 A + L + + + + P G +L A Sbjct: 156 FYAVVAVYVVLADVLVYFLLPSVAKFSAS--GGPWGGVSASVPPREELVPVLFLTALVQS 213 Query: 173 LIGIMVMRLMI 183 +IG +++ + Sbjct: 214 VIGGLIVGRLA 224 >gi|317046911|ref|YP_004114559.1| type II secretion system F domain-containing protein [Pantoea sp. At-9b] gi|316948528|gb|ADU68003.1| Type II secretion system F domain protein [Pantoea sp. At-9b] Length = 399 Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 18/155 (11%), Positives = 46/155 (29%), Gaps = 4/155 (2%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + ++AGLP+++++A++ D R + L+ Sbjct: 64 LVQQLATLLKAGLPLAESLALLAEGHPDIGW----RTLLKGLQQQVLAGIPFSQALRGWP 119 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 Q + +L G L E L++ ++ ++ KV + ++ Sbjct: 120 QIFPPLFPALMQVGELTGQLDECCRQLAQQQTSQQLLRQKVVKALRYPLFIMLVAIAVST 179 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + V +A + + Sbjct: 180 GMLLFVLPEFVAVYASFDAPLPALTASVMALSALF 214 Score = 40.9 bits (94), Expect = 0.089, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 5/134 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 DI+ + RAGL + ++ + + + E ++ +S Sbjct: 264 QLTQIFDILQLTQRAGLTLLQSLQAVEVTLTSLLWREAISQLQQH-----ISAGAPLHQA 318 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 Q + + + G L L+ L+ R+ +A+ A ++E I G Sbjct: 319 LHQHQLFTPLCAQLIKVGEEVGALDVMLSRLAEWHRENTLGRAESLAAALEPMMMVVIGG 378 Query: 135 SLPFCVSTLVYFTS 148 + V + Sbjct: 379 IVGTLVIAMYLPVF 392 >gi|163781953|ref|ZP_02176953.1| pilus assembly protein PilC [Hydrogenivirga sp. 128-5-R1-1] gi|159883173|gb|EDP76677.1| pilus assembly protein PilC [Hydrogenivirga sp. 128-5-R1-1] Length = 407 Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 20/187 (10%), Positives = 58/187 (31%), Gaps = 18/187 (9%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 + KR D + + + ++G+P+ + + +P ++ V Sbjct: 56 LHFRSVKRK-----DLIDLFENLHLLAQSGVPLGVGLWDLAEDMENPAIKDMLHDVAYRI 110 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 GLS+S++++R + + + + G+L ++S ++ +KV Sbjct: 111 QSGLSISDALARYEDVLG-----SIAVNLVRIGEETGSLDRVFKDISEHYARIEDFVSKV 165 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-------AFM 172 + + + + + V L ++ + Sbjct: 166 KQALIYPAFAVFTVTIALVFWLVYVLPKLAELFKGLNVQLPTITIVVMNISEFVKEYILY 225 Query: 173 LIGIMVM 179 + V+ Sbjct: 226 ISAFFVI 232 Score = 34.7 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 16/133 (12%), Positives = 42/133 (31%), Gaps = 5/133 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 ++ + + V AG+ + + + + + V + S+S S Sbjct: 269 NYAFFSEYMRLLVSAGVSLYETLQTLEESFHNRVFK-----RAMASMKESVSGGSSISES 323 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 Q + + G L + L L+R ++ + + A +E + Sbjct: 324 MRRTQLFPSLMLRMIAVGEETGGLDDQLDYLARYYYNKLDYITQNIAKIIEPLIIITVGL 383 Query: 135 SLPFCVSTLVYFT 147 + + +L+ Sbjct: 384 FMAIIMISLLLPI 396 >gi|241763208|ref|ZP_04761267.1| type II secretion system protein [Acidovorax delafieldii 2AN] gi|241367707|gb|EER61973.1| type II secretion system protein [Acidovorax delafieldii 2AN] Length = 316 Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 17/144 (11%), Positives = 45/144 (31%) Query: 44 SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALA 103 SD E +R + + + +E S + + GNL L Sbjct: 3 LSDEAEDERQRHLVAALRAEVNAGATFARALSQHPREFSDIYCAVIGAGEHSGNLGLVLE 62 Query: 104 NLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 L+ L +R+ ++AK+ ++ + ++ + + V Sbjct: 63 RLADDLEERQALQAKLVGAALYPAIVTLVAIAIVLFLVSYVVPQVASVFAGTKRALPFLT 122 Query: 164 LLGVAAAFMLIGIMVMRLMINFDV 187 + + + ++ + L+ + Sbjct: 123 VAMLGLSALVRSYGWVLLIATIVI 146 Score = 35.5 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ ++ + G L+ ++++ R+ Sbjct: 185 FASTLAMLASAGVPILKALQAAAETLNNRAMRADALDALVLVREGAPLASALAQKKRFPG 244 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + + G L L + L +A A +E + + Sbjct: 245 ------LLSMFARLGEQTGQLPVMLQRAATQLSTEVQRRAMQLATILEPLLIVAMGLVVM 298 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 299 LIVLAVLLPI 308 >gi|167584853|ref|ZP_02377241.1| type II secretion system protein [Burkholderia ubonensis Bu] Length = 259 Score = 44.0 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 20/160 (12%), Positives = 50/160 (31%), Gaps = 7/160 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--PVRSEFRRVIETQHLGLSLSESISRM 72 L + + AGL + +A+ + ++ + R++ G LS+++++ Sbjct: 62 ALALFLQELSTLLDAGLVLIEALEALRDKADAGKAAKHVIDRILAVMVEGQPLSKALAQQ 121 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P S+ G L AL + + ++ +V + + Sbjct: 122 PEVFPP-----LLVATVESSEGSGQLPVALKRYQQYEVRIEQIRKRVMGALIYPAVVIGV 176 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 ++ ++ V L P + A + Sbjct: 177 GVAILLFMAFFVIPRFAVVFESLTTLPATAQAMLWWATLL 216 >gi|297537652|ref|YP_003673421.1| Type II secretion system F domain-containing protein [Methylotenera sp. 301] gi|297256999|gb|ADI28844.1| Type II secretion system F domain protein [Methylotenera sp. 301] Length = 393 Score = 44.0 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 44/147 (29%), Gaps = 6/147 (4%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + + AGL +A + ++ R +I G SLS ++ + Sbjct: 57 LVLFSQELYALLEAGLTQVEAFETMAEKETRTENRKMLVEIISKLREGHSLSTALQQFSS 116 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 P S+ G+LSE+L+ ++ K+ + S+ + Sbjct: 117 VFP-----ALYVSTIRASEKTGDLSESLSRYIAYQSQMDLVRKKIVSASIYPVLLIGVGS 171 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRG 161 + + V + D Sbjct: 172 LVTLFLMLYVVPKFSKIYEDIGTDLPF 198 Score = 37.0 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 13/100 (13%), Positives = 33/100 (33%), Gaps = 6/100 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + +R G+PV A+ ++ G +R + + + G +S ++ + Sbjct: 259 QLARFYRTLGMLLRGGIPVVSALEMVSGLLQPILRRQLVQASNSIREGKPISHAMEQFGL 318 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 P + + + G + E ++ D Sbjct: 319 TTP------VALRLLRVGERTGGMGEMTERIANFYDDEMA 352 >gi|320530649|ref|ZP_08031698.1| type II secretion system F domain protein [Selenomonas artemidis F0399] gi|320137100|gb|EFW29033.1| type II secretion system F domain protein [Selenomonas artemidis F0399] Length = 405 Score = 44.0 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 19/144 (13%), Positives = 45/144 (31%), Gaps = 7/144 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSD--PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + + AG+PV +A+ I + + G +LS+++ R R Sbjct: 70 LFEELAALLAAGIPVHEALGQIAAGTDAASAYGRLVAALHADVLCGTALSQAMERRPR-- 127 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 S + + G L A + L + ++ +++ G Sbjct: 128 ---VFSPSVVGMVRAGEESGTLDHIFAETAAFLTEAHTLRESMKSALAYPLFLLVATGFS 184 Query: 137 PFCVSTLVYFTSPGYMNVLINDPR 160 ++ + + L +P Sbjct: 185 IVLMTMFILPVFASLLRDLGAEPP 208 >gi|317122037|ref|YP_004102040.1| type II secretion system F domain [Thermaerobacter marianensis DSM 12885] gi|315592017|gb|ADU51313.1| Type II secretion system F domain [Thermaerobacter marianensis DSM 12885] Length = 300 Score = 44.0 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 1/120 (0%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P L+ I + R GL + AV V P+ + R G L + + + R Sbjct: 159 LPGWLEDIALAARGGLNLRQAVEVANDVGEGPLIDDAREAFARVRAGQPLRQPLLELARL 218 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P EV+ + G L++ L R++R + + + I Sbjct: 219 YPDPEVTVALRTLVEAETRGLPLAQTLEEQVRLMRALAARRLQ-RHADSLPFWLTVITMG 277 >gi|269129022|ref|YP_003302392.1| type II secretion system protein [Thermomonospora curvata DSM 43183] gi|268313980|gb|ACZ00355.1| type II secretion system protein [Thermomonospora curvata DSM 43183] Length = 247 Score = 44.0 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 23/172 (13%), Positives = 53/172 (30%), Gaps = 5/172 (2%) Query: 18 NALDIIVRSVRAGLPVSDAVAVI-----VGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D + + AG A S + R + ++ R+ Sbjct: 70 ELCDGVAAELHAGRTPEAAFTAAAAVLPAEVSVPLLAERRRGGPAGPPDPGDIPAALERL 129 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G + +A+L+ LRD + + +V A +A+A + Sbjct: 130 SARPGAEGLRLLGACWRIGADSGATFATVIADLAAALRDEEAQRREVAAQLAGPRATARL 189 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + LP + + L G + L + ++G+ + Sbjct: 190 LAGLPLLGLGMAAALGADPLAFLCGTLPGLICLTLGLGLDVLGLWWTNRLAR 241 >gi|227822842|ref|YP_002826814.1| general secretion pathway protein F, GspF [Sinorhizobium fredii NGR234] gi|227341843|gb|ACP26061.1| general secretion pathway protein F, GspF [Sinorhizobium fredii NGR234] Length = 404 Score = 44.0 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 56/157 (35%), Gaps = 10/157 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 DF + + AG + A+ +V R E ++ G S S + + M Sbjct: 66 DFGRFFSELQILLEAGFTIDAALKTVVDDREMAAGREELSNLVAAVMAGGSFSSAFAHMQ 125 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 P T + + + G L + +A+L++ D+K +A+ + +++ Sbjct: 126 NAPP------EVTALLLSGEQAGRLEQVVASLAQSFEDQKARRAEAIETLLYPA---FLL 176 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + F + +++ P V +L + Sbjct: 177 AVMLFSIGVIMFVLVPAIEPVFEGAEHARPMLISVLS 213 >gi|207724220|ref|YP_002254617.1| general secretion pathway gspf-related protein [Ralstonia solanacearum MolK2] gi|206589433|emb|CAQ36394.1| general secretion pathway gspf-related protein [Ralstonia solanacearum MolK2] Length = 399 Score = 44.0 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 72/188 (38%), Gaps = 15/188 (7%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +K R K + +RAGL VS+A+ + + P +RR+ + GL Sbjct: 54 KLKSRRRKVDAGL--VCIELGGLLRAGLTVSEALDSLAHRDDHPNVDVYRRLYDGLLSGL 111 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 LSE++ ++ P ++ G + +AL ++ + ++ ++ KV + + Sbjct: 112 PLSEAMKQVEGIFPG-----ILVAAIQANERSGRIPDALDEYAKYAQAQEALRKKVVSAA 166 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMN--VLINDPRGHMLLGVAAAF------MLIG 175 + + + V + + +LL V +L+G Sbjct: 167 VYPATVIGFGLLVVLFLLAYVIPRFAMVYDGTAMQMSGPTRILLAVGHFIHERGWGLLVG 226 Query: 176 IMVMRLMI 183 I+++ +++ Sbjct: 227 IVLLGVIV 234 >gi|153810170|ref|ZP_01962838.1| hypothetical protein RUMOBE_00551 [Ruminococcus obeum ATCC 29174] gi|149833349|gb|EDM88430.1| hypothetical protein RUMOBE_00551 [Ruminococcus obeum ATCC 29174] Length = 347 Score = 44.0 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 20/166 (12%), Positives = 59/166 (35%), Gaps = 12/166 (7%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 + N + + +G+ V++ +A++ +S D R ++ + SL++++ Sbjct: 8 RELSNFFGQLGMLIHSGISVTEGLAILQDESQTDTDREIITALLTSMEETGSLTQAMETS 67 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R+ S + G L E L +L+ + + ++++ + Sbjct: 68 GRFPH------SSVSYIKTGEETGCLDEILNSLTLHYEQEQEVSEQIRSAVTYPLIMLGM 121 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 +G + + V + G + ++ + G ++ Sbjct: 122 MGIVIVVLLVKVLPVFQQVFQQM-----GMEMNTLSLGLLKAGSIL 162 >gi|291561781|emb|CBL40581.1| hypothetical protein CK3_08150 [butyrate-producing bacterium SS3/4] Length = 408 Score = 44.0 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 9/160 (5%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-------DPVRSEFRR 54 K K+ + + D+P L V AG PV A V + PV E R Sbjct: 251 KEAKKQWEDRMILDYPELLSDFVVLTGAGYPVRQAWKKQVVDAESKNTVLIHPVYREMRT 310 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 + G + R + L F++++ GG L L + Sbjct: 311 ALNQMETGTPEIRAYGEFGRRIGLGCYIKFASLLGNSVSTGGKDLRRL--LEEEMETAFR 368 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + ++ E ++ +I +V +P ++++ Sbjct: 369 QRKELALRKGEEASTKLLIPMFLMLGVVMVMVVAPAFLSL 408 >gi|160878195|ref|YP_001557163.1| hypothetical protein Cphy_0034 [Clostridium phytofermentans ISDg] gi|160426861|gb|ABX40424.1| hypothetical protein Cphy_0034 [Clostridium phytofermentans ISDg] Length = 485 Score = 44.0 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 50/172 (29%), Gaps = 27/172 (15%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---------------- 45 + +++ + L D+P + + AG+ A IV + Sbjct: 307 REREQQKQEQLLLDYPEIMMKYTLLLSAGMTTYGAWERIVKDYNTRRERELGGTRRNKKK 366 Query: 46 ----------DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQL 94 E LG+S S + R R L FST+I + Sbjct: 367 LSKSKSMKSMRYAYEEMIITKNEIDLGVSESVAYERFGRRCKLLSYLRFSTIIVQNMKKG 426 Query: 95 GGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 + L S + +AK K ++G L ++ L+ Sbjct: 427 NKGMIPMLEAESVQALLDRKEQAKRLGERASTKMLMPMMGMLCIVIAILMVP 478 >gi|330813193|ref|YP_004357432.1| general secretion pathway protein F / Type II secretory pathway, component PulF / Type IV fimbrial assembly protein PilC [Candidatus Pelagibacter sp. IMCC9063] gi|327486288|gb|AEA80693.1| general secretion pathway protein F / Type II secretory pathway, component PulF / Type IV fimbrial assembly protein PilC [Candidatus Pelagibacter sp. IMCC9063] Length = 330 Score = 44.0 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 54/161 (33%), Gaps = 8/161 (4%) Query: 26 SVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFF 84 V+AGLP+ + ++ Q +P ++ + + G +LS+ + Sbjct: 1 MVKAGLPILQVLDMLGSQLENPSLKEIVVEIKKKLEGGTTLSKCFESYPKI-----FDNI 55 Query: 85 STVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144 + + G L L L L ++ +K K++ M + ++ + V Sbjct: 56 YVNLIKAGEASGKLDVFLLKLVESLEKKERIKKKIKGALMYPAVMFTVAITVMVFMLIKV 115 Query: 145 YFTSPGYMNVLINDPRGHM--LLGVAAAFMLIGIMVMRLMI 183 + G +L + G ++ L+I Sbjct: 116 VPVFAKMYEGMGIALPGATASILSASDFMRGTGGLMTFLII 156 >gi|225026644|ref|ZP_03715836.1| hypothetical protein EUBHAL_00895 [Eubacterium hallii DSM 3353] gi|224956014|gb|EEG37223.1| hypothetical protein EUBHAL_00895 [Eubacterium hallii DSM 3353] Length = 445 Score = 44.0 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 50/164 (30%), Gaps = 10/164 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---------QSSDPVRSE 51 ++ KK + DFP + ++ + AGL AV I S + Sbjct: 282 LQEEGKKCQEQAERDFPVIVHLLTLYMGAGLSFFSAVKRISQNYQKQRELDDSKKYAFEK 341 Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANL-SRILR 110 R+ + G+S E+ S ++ G + L R Sbjct: 342 MMRMEQQMSNGVSQREACQDWGMQFRTDSYQKLSLILIQSFTKGSKEAAMLMEAEEREAF 401 Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 ++ +AK + + +I L + ++Y + Sbjct: 402 HKRIDRAKKEGEEASTRLLFPMILLLCQVMLLVMYPALTRFQGF 445 >gi|68248899|ref|YP_248011.1| putative type IV pilin secretion protein [Haemophilus influenzae 86-028NP] gi|59939220|gb|AAX12379.1| PilC [Haemophilus influenzae] gi|68057098|gb|AAX87351.1| putative type IV pilin secretion protein [Haemophilus influenzae 86-028NP] Length = 406 Score = 44.0 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 17/162 (10%), Positives = 61/162 (37%), Gaps = 6/162 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 + L+ + +++ +P+ +++ ++ + + R++++ GL+ S++I + Sbjct: 56 NSEISELLNQLATLLQSVIPLKNSLQILQQNCTQIMLNKWLERLLQSIESGLAFSQAIEQ 115 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 +Y+ QE + ++ G L+ ++ ++ K+Q + + Sbjct: 116 QGKYLTQQE-----IQLIQVGEMTGKLAVVCKKIATHRSQSLALQRKLQKIMLYPSMVLG 170 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 I L + + + + + ++ + L Sbjct: 171 ISLLLTLALLLFIAPQFAEMYSGNNAELPTITAILLSISNFL 212 Score = 38.6 bits (88), Expect = 0.37, Method: Composition-based stats. Identities = 12/137 (8%), Positives = 44/137 (32%), Gaps = 4/137 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS--EFRRVIETQHLGLSLSESIS--R 71 N + ++AG+P++ A+ + ++ ++ + + L Sbjct: 263 LVNFSQSLQIMLQAGVPLNQALDSFLPRTQTWQTKKTLVNDMVLDKEVRSILQWVSQGYA 322 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + + G L+ L +++ +++ N + + + +E Sbjct: 323 FSNSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIADNYQEKLNHQIDLLSQMLEPLMMVI 382 Query: 132 IIGSLPFCVSTLVYFTS 148 I + + + Sbjct: 383 IGSLIGIIMMGMYLPIF 399 >gi|227502474|ref|ZP_03932523.1| bacterial type II secretion system protein F domain protein [Corynebacterium accolens ATCC 49725] gi|227076843|gb|EEI14806.1| bacterial type II secretion system protein F domain protein [Corynebacterium accolens ATCC 49725] Length = 259 Score = 44.0 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 20/182 (10%), Positives = 59/182 (32%), Gaps = 1/182 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++ + + + ++ +RAG ++ A+ + +E+ + Sbjct: 74 MVARTRRRGREALAGYFGVVTADLRAGATLASALTRGAESLPATTPRDMSAALESTATAV 133 Query: 64 SL-SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + + E++ ++ + +Q G ++ + + A Sbjct: 134 ARGAPPHVALSGAHADAELTRLGHLLELSTQHGIGVASLFEQAQSRMDALRRHHQSTAAG 193 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 +A+A ++ LP + + L+ G +LL + G R++ Sbjct: 194 LQGPQATATVLACLPIAGIAMGGAMGANSLGFLLGGGLGGILLVIGVGLACGGFAWSRVI 253 Query: 183 IN 184 I Sbjct: 254 IR 255 >gi|110802764|ref|YP_699126.1| pilus biogenesis protein [Clostridium perfringens SM101] gi|110683265|gb|ABG86635.1| putative pilus biogenesis protein [Clostridium perfringens SM101] Length = 339 Score = 44.0 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 54/144 (37%), Gaps = 9/144 (6%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESIS 70 F D+ + V++G+PV ++ +I E +R+ + G +LS++ Sbjct: 4 FKDEASYICLNLSTYVKSGMPVGRSLDLIKNTVKGKKYKESLKRIEKKVLNGEALSKAFK 63 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 P + + GNL E L +R + K +K K+ + Sbjct: 64 EEGNLYP-----DLMKDMMRIGEESGNLEEVLEKCARNILAEKEIKNKIIKSLRYPVS-- 116 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNV 154 ++ L + + + P ++++ Sbjct: 117 -LLIGLIIMIFGYITYILPQFVDM 139 >gi|167039382|ref|YP_001662367.1| hypothetical protein Teth514_0724 [Thermoanaerobacter sp. X514] gi|300914023|ref|ZP_07131340.1| Type II secretion system F domain protein [Thermoanaerobacter sp. X561] gi|307725292|ref|YP_003905043.1| type II secretion system F domain-containing protein [Thermoanaerobacter sp. X513] gi|166853622|gb|ABY92031.1| hypothetical protein Teth514_0724 [Thermoanaerobacter sp. X514] gi|300890708|gb|EFK85853.1| Type II secretion system F domain protein [Thermoanaerobacter sp. X561] gi|307582353|gb|ADN55752.1| Type II secretion system F domain protein [Thermoanaerobacter sp. X513] Length = 249 Score = 44.0 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 47/145 (32%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 ++ P A++I + + G+ + ++ IV VR G SL ++++ Sbjct: 103 EEELPAAIEIFINGLEVGMNKENIISYIVRTREGVVRDLLHEAQVRLDTGSSLKDALTYA 162 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 F +I+ + ++ E L L +R+ K A ++ I Sbjct: 163 ASKSLNDHFKRFVKIITGEFASEQDIKENLEELLDEVREINYNKKTESASVLDNSLFFPI 222 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIN 157 + + + N Sbjct: 223 FLGYFIPILIIFALPFVLSLKGFFN 247 >gi|296132333|ref|YP_003639580.1| hypothetical protein TherJR_0812 [Thermincola sp. JR] gi|296030911|gb|ADG81679.1| hypothetical protein TherJR_0812 [Thermincola potens JR] Length = 290 Score = 44.0 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 15/176 (8%), Positives = 64/176 (36%), Gaps = 2/176 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ K+ + P+ I++ + + A + +P+++ + ++ Sbjct: 99 VQRYKKRERMALMVAIPDFARILIARLVDHHSIVKAFEMTQKDCFEPMKTLAQEFVKDVG 158 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISV--QSQLGGNLSEALANLSRILRDRKNMKAK 118 +G+ + ++ + + ++ + F+ + + Q A+ + Sbjct: 159 VGIGVQLALENLKVKVSYRKFNTFTETLLLAHQEGYSTEALAAMKKAVESIESDIKAIEA 218 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 +Q + + K + + + ++ F + N+ ++ G +L+ + ++ Sbjct: 219 LQITTRKKKRELFSVVIASWLFPVVLSFMNTDNTNIFLDTFSGKVLIFLYIISTMV 274 >gi|260913756|ref|ZP_05920232.1| type IV pilus assembly protein PilC [Pasteurella dagmatis ATCC 43325] gi|260632295|gb|EEX50470.1| type IV pilus assembly protein PilC [Pasteurella dagmatis ATCC 43325] Length = 404 Score = 44.0 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 24/178 (13%), Positives = 71/178 (39%), Gaps = 21/178 (11%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISR 71 + + ++ +++ LP+ +A+ ++ +++ +++ R ++ G++ S +++ Sbjct: 57 QAELCDLFTLLATLLQSTLPLKEALQALLQNTTNIQLNQWLRNLLMQLESGVAFSVALAS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + YM QE+ + ++ G L++ +++ + ++ KVQ + + Sbjct: 117 LGSYMNYQEL-----QLIKVGEMTGRLAQVCQQIAQYRQQSLVLQRKVQKIMLYPSIIVG 171 Query: 132 IIGSLPFCVSTLVYFTS---------PGYMNVLINDPRGHM-----LLGVAAAFMLIG 175 I L + + P + +L N G + LL + + G Sbjct: 172 ISLLLTLMLLLFIVPEFAVMYQNQKLPVFTELLFN-LSGWLSDNGFLLIILTVLISFG 228 >gi|294781781|ref|ZP_06747114.1| general secretion pathway protein F [Fusobacterium sp. 1_1_41FAA] gi|294481891|gb|EFG29659.1| general secretion pathway protein F [Fusobacterium sp. 1_1_41FAA] Length = 345 Score = 44.0 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 62/152 (40%), Gaps = 7/152 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +++GL + A+ +I+ + + +++ H L++ ++I + Sbjct: 11 FTNELALLIKSGLTFTKAIEIILKEEKNKKFK---DILKKIHKNLTMGKNIYDSFKPFEN 67 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 S + ++ + G N+ E+L ++S+ L + + K+ + + +I Sbjct: 68 TFGSTYLYILKIGELSG-NIVESLEDISKSLDFDLSRRKKLGGILIYPI---VVICLTFL 123 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 VS L+ + P ++ + + L+ Sbjct: 124 IVSFLLIYILPSFITIFEENQIELPLVTRILL 155 >gi|167036498|ref|YP_001664076.1| hypothetical protein Teth39_0067 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116990|ref|YP_004187149.1| type II secretion system F domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855332|gb|ABY93740.1| hypothetical protein Teth39_0067 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319930081|gb|ADV80766.1| Type II secretion system F domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 249 Score = 44.0 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 47/145 (32%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 ++ P A++I + + G+ + ++ IV VR G SL ++++ Sbjct: 103 EEELPAAIEIFINGLEVGMNKENIISYIVRTREGVVRDLLHEAQVRLDTGSSLKDALTYA 162 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 F +I+ + ++ E L L +R+ K A ++ I Sbjct: 163 ASKSLNDHFKRFVKIITGEFASEQDIKENLEELLDEVREINYNKKTESASVLDNSLFFPI 222 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIN 157 + + + N Sbjct: 223 FLGYFIPILIIFALPFVLSLKGFFN 247 >gi|256833436|ref|YP_003162163.1| type II secretion system protein [Jonesia denitrificans DSM 20603] gi|256686967|gb|ACV09860.1| type II secretion system protein [Jonesia denitrificans DSM 20603] Length = 416 Score = 43.6 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 52/155 (33%), Gaps = 8/155 (5%) Query: 29 AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVI 88 AG+PV A+A +E T + + Q Sbjct: 92 AGIPVVQALA--------HRLAEDDTAQRTVRVPPRDRCHSFQPADASAEQAARAVVAAC 143 Query: 89 SVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 + S G +L+ L + LR + ++ + A+A+A ++ LP + Y Sbjct: 144 RLSSVTGLSLATVLDTTAAALRRATDARSARTTATAGAEATARLLLFLPLFGLLMGYALG 203 Query: 149 PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + L P G L A F+L G + ++ Sbjct: 204 AQPLTWLTRTPLGWGSLIAAIVFLLAGRAWVARLL 238 Score = 38.2 bits (87), Expect = 0.58, Method: Composition-based stats. Identities = 18/138 (13%), Positives = 40/138 (28%), Gaps = 3/138 (2%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 LD++ + AG + A+ + D ++ V LG S + + Sbjct: 281 LDLLTTVMSAGHSIDSALDTVATHVPDLEVAQLGVVARLLLLGASWQRAWANAPARYAFL 340 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + S + L + I +++ + + Q LS + F Sbjct: 341 -GEALADGWQRGSSVIPTLIAT--RDAWIAQEQADAHQRAQRLSSMIVVPVGVCYLPAFV 397 Query: 140 VSTLVYFTSPGYMNVLIN 157 + +V + Sbjct: 398 LVGVVPTAVSLGVATFFG 415 >gi|254361084|ref|ZP_04977229.1| possible IVSP family Type IV (conjugal DNA-protein transfer-VirB) secretory pathway pilin biogenesis protein PilC [Mannheimia haemolytica PHL213] gi|261493589|ref|ZP_05990109.1| pili/fimbriae biogenesis protein [Mannheimia haemolytica serotype A2 str. BOVINE] gi|153092570|gb|EDN73625.1| possible IVSP family Type IV (conjugal DNA-protein transfer-VirB) secretory pathway pilin biogenesis protein PilC [Mannheimia haemolytica PHL213] gi|261310771|gb|EEY11954.1| pili/fimbriae biogenesis protein [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 398 Score = 43.6 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 20/141 (14%), Positives = 53/141 (37%), Gaps = 6/141 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRM 72 ++ + L + V + +P+ A+++++ + + +I+ G + S+S+ ++ Sbjct: 58 EEVNSLLSQLALLVNSAMPLKQALSMLLQNCRNIRLYLWLNELIQHIESGYAFSQSLEKL 117 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 ++ QE + + G L L NL+ + + KV+ + I Sbjct: 118 GEFVTNQE-----IQLIKMGEQSGKLGIMLTNLAESRAKLEKLAKKVKKILFYPVIVLLI 172 Query: 133 IGSLPFCVSTLVYFTSPGYMN 153 +L + L+ Sbjct: 173 SLALSIGLLVLIVPQFAQLYG 193 >gi|161507247|ref|YP_001577201.1| competence protein [Lactobacillus helveticus DPC 4571] gi|160348236|gb|ABX26910.1| Competence protein [Lactobacillus helveticus DPC 4571] Length = 334 Score = 43.6 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 67/185 (36%), Gaps = 16/185 (8%) Query: 1 MKHLIKKRTAKF--LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 +K++ + + + LD + S+ G + +++ ++ + +++++ Sbjct: 2 LKYMSNSKKDRLNSEEQL-FFLDYLKHSLENGFSLINSIELMPVLWPKK-KELMQKLVKR 59 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G S S + ++ S + + GNL E L L+ + R ++ K Sbjct: 60 MKEGNSFSVELIQLG-------FSKTTVTQVNLALQQGNLIECLNQLAILSRLKQEQVKK 112 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 ++A A ++ L + + + G +++ +L GI Sbjct: 113 LRAELSYPFVLAIMMVILLVFMQSFISTQFNDRSEY-----SGDLIMLGLIGAVLAGIYF 167 Query: 179 MRLMI 183 + +I Sbjct: 168 LARII 172 >gi|284176146|ref|YP_003406423.1| hypothetical protein Htur_5119 [Haloterrigena turkmenica DSM 5511] gi|284017803|gb|ADB63750.1| hypothetical protein Htur_5119 [Haloterrigena turkmenica DSM 5511] Length = 604 Score = 43.6 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 23/190 (12%), Positives = 66/190 (34%), Gaps = 14/190 (7%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLG 62 ++ + D +AL I+ R V G V AV + + + F R + L Sbjct: 374 AVRHYVREVEDHLTDALYIVGRQVSDGESVESAVDLAATRVPGETGAVFERAAGLQRRLQ 433 Query: 63 LSLSESI---SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + + + + +P + ++++ S+ G A+ +++ L + ++A+ Sbjct: 434 IGVESAFLGPHGALEDVPSPRARGTAALLAIASKEGKPAGRAIVSMADHLEELSEVEAET 493 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN---VLIND-------PRGHMLLGVAA 169 + + + + + V M V + P + + + Sbjct: 494 KRNLAKVTGTLDATAAYFAPMVAGVTVGMAAMMASQNVFTSSEVDAAAFPAEPLAIVIGI 553 Query: 170 AFMLIGIMVM 179 +++ +++ Sbjct: 554 YLVMLCFILL 563 >gi|325109359|ref|YP_004270427.1| type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] gi|324969627|gb|ADY60405.1| Type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] Length = 402 Score = 43.6 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 43/167 (25%), Gaps = 3/167 (1%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + +GLP+ + ++ + R L E + + Sbjct: 65 ELASHLADLTSSGLPLESGLKMLAEEL-GGQGVIGIRQRRQLSLLARRLEQGESLDEALS 123 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 Q G ALA LR +++ +V + L Sbjct: 124 QQGAPPDLIAAVRGGMNSGQPGRALAEYVTYLRSISSLRGRVFLGLFYPLTLFAVSLVLV 183 Query: 138 FCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRLM 182 V + + M++ V+A + GI + M Sbjct: 184 TFVMVGIVPQFAEIFEGFGVELPVITKMIMEVSAGMVKNGISFLIAM 230 >gi|269129021|ref|YP_003302391.1| type II secretion system protein [Thermomonospora curvata DSM 43183] gi|268313979|gb|ACZ00354.1| type II secretion system protein [Thermomonospora curvata DSM 43183] Length = 208 Score = 43.6 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 58/146 (39%), Gaps = 4/146 (2%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 + D P A+ ++ +R GL +AV + P+ +E R V LG + + Sbjct: 63 MVADLPIAIGLLAACLRGGLSWDEAVEAVCDAVGGPLGAELRAVAARVRLGADPAAAWLA 122 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + E++ + ++ G L+ AL L+ R A +A ++ +A A Sbjct: 123 LAQE---PELAPLARTVARAVDSGAALAPALTRLAADRRAAARAAAAARARAVGVRAVAP 179 Query: 132 I-IGSLPFCVSTLVYFTSPGYMNVLI 156 + + LP + V G L+ Sbjct: 180 LGLCFLPAFILLGVAPAVAGIAQTLL 205 >gi|92116354|ref|YP_576083.1| type II secretion system protein [Nitrobacter hamburgensis X14] gi|91799248|gb|ABE61623.1| type II secretion system protein [Nitrobacter hamburgensis X14] Length = 403 Score = 43.6 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 18/138 (13%), Positives = 47/138 (34%), Gaps = 9/138 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + ++A + DA+ ++ + +R ++ G S +E+++ P Sbjct: 69 FTRDLALLLKASARLDDALELLSNDADVGRLRPVVGKLRAALLGGESFAEAVAAHPILFP 128 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++ G L + L L + M+ K+ +++ + Sbjct: 129 P-----MYVALVRVGEVSGTLDQVLELLGAERARAEQMRRKLTDAMQYPL---FVLVAAG 180 Query: 138 FCVSTLVYFTSPGYMNVL 155 + + F P + VL Sbjct: 181 GVMLFFILFVLPQFSVVL 198 >gi|291526238|emb|CBK91825.1| hypothetical protein EUR_28800 [Eubacterium rectale DSM 17629] Length = 408 Score = 43.6 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 16/121 (13%), Positives = 37/121 (30%), Gaps = 11/121 (9%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV----------GQSSDPVRSEFRRV 55 K+R + ++P + + + +G+ V A I ++ P E Sbjct: 250 KERNIQLQLEYPEIVSKMAVLMGSGMTVEQAWNRITARYLDKRKNNDENIMPAYEEMLVT 309 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKN 114 G++ ++ + + L +I + E L S D + Sbjct: 310 EREISDGVTGRKAYAGFAERVKLPCYQKLVRIILQSIHKGSKGVCEMLKKESEDAFDERR 369 Query: 115 M 115 + Sbjct: 370 L 370 >gi|224373390|ref|YP_002607762.1| msha biogenesis protein mshg [Nautilia profundicola AmH] gi|223589385|gb|ACM93121.1| msha biogenesis protein mshg [Nautilia profundicola AmH] Length = 405 Score = 43.6 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 64/169 (37%), Gaps = 8/169 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 +++ L+ + + AGL + V I + +R F + GLSL+ + + Sbjct: 65 EEYIAVLEQMYVMLDAGLAIDMVVGNIKDTIKNKRLRQIFYSLENDIKAGLSLTSAFEKF 124 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + E+ + + + G+L+ A+ +LS IL + + + +++ + + Sbjct: 125 EK-----ELGKLTVSMIKLGEETGDLASAIKDLSVILHEILDNRKRLKKATRYPMFIVFA 179 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVM 179 + V V L + LL + A+ G+ ++ Sbjct: 180 MSIAFVIVILFVIPPFKSIFAQLNTELPLPTRFLLWIEASIQEYGLYIL 228 >gi|52424416|ref|YP_087553.1| HofF protein [Mannheimia succiniciproducens MBEL55E] gi|52306468|gb|AAU36968.1| HofF protein [Mannheimia succiniciproducens MBEL55E] Length = 344 Score = 43.6 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 21/161 (13%), Positives = 60/161 (37%), Gaps = 6/161 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMP 77 L+ + + A +P+ +++ +++ S +++ R ++ G + S+SI Y+ Sbjct: 1 MLNQLATLLDAQIPLKESLHILIQNCSSIPLNQWLRNLLSQLERGFAFSKSIELQGLYLS 60 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 QE+ + ++ G LS + ++ + + ++ K+Q + + I +L Sbjct: 61 AQEL-----QLIKVGEMSGKLSYVCSQIAHFRQQQLALQRKIQKILLYPLVVLVISATLT 115 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + D + + L + Sbjct: 116 LLLLIFIVPQFAEMYQDNNQDLPFITKFLLVLSHSLTHYIW 156 >gi|18310825|ref|NP_562759.1| fimbrial assembly protein [Clostridium perfringens str. 13] gi|18145507|dbj|BAB81549.1| probable fimbrial assembly protein [Clostridium perfringens str. 13] Length = 339 Score = 43.6 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 53/144 (36%), Gaps = 9/144 (6%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESIS 70 F D+ + V++G+ + ++ +I D E +R+ G +LS++ Sbjct: 4 FKDEASYICLNLSTYVKSGMSIGRSLDLIKNTVKDKKYKESLKRIERKVLNGEALSKAFK 63 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 P + + GNL E L +R + K +K K+ + Sbjct: 64 EEGNLYP-----DLMKDMMRIGEESGNLEEVLEKCARNILAEKEIKNKIIKSLRYPVS-- 116 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNV 154 ++ L + V + P ++++ Sbjct: 117 -LLIGLIIMIFGYVTYILPQFVDM 139 >gi|326390769|ref|ZP_08212322.1| Type II secretion system F domain [Thermoanaerobacter ethanolicus JW 200] gi|325993163|gb|EGD51602.1| Type II secretion system F domain [Thermoanaerobacter ethanolicus JW 200] Length = 255 Score = 43.6 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 2/146 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59 + + K R KF + P +D+ A +P+ D + + VR+ ++ Sbjct: 97 ISSVKKDRQEKFRREMPEIVDLFELGAAADVPLEDIFLITAQSAQAKEVRNALTKLAAEY 156 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + ++ R + + L E + + + + G L E L+ LS L + K Sbjct: 157 IMTKEKEVALKRFINEVNLPEANVLAMALLQGERTGRTL-EILSTLSTSLFNTAASKIAR 215 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVY 145 Q SME K A + + V+ +Y Sbjct: 216 QDKSMEYKVLAAVFFLMASIVTLYIY 241 >gi|258510602|ref|YP_003184036.1| hypothetical protein Aaci_0599 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477328|gb|ACV57647.1| hypothetical protein Aaci_0599 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 268 Score = 43.6 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 52/146 (35%), Gaps = 5/146 (3%) Query: 7 KRTAKFLDDFPNALD----IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 ++ +F DD L ++ G+ D + +++ + +R R + Sbjct: 108 QKRKRFEDDLRFGLRRVKMLMASLYERGITPEDMLPLLISATDGALRQLLERAYQRMQTT 167 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAKVQA 121 +L+++++ M + L E+ ++V + +L L ++ R + + +A Sbjct: 168 DTLADALTWMAQETGLAEMRQLASVWIQAGRYEGTSLETQLKQMAVDERAQFLFNLEKRA 227 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFT 147 +I + LV Sbjct: 228 ERKRMSVLFEVIAFIALPSIFLVGIL 253 >gi|238062112|ref|ZP_04606821.1| type II secretion system protein [Micromonospora sp. ATCC 39149] gi|237883923|gb|EEP72751.1| type II secretion system protein [Micromonospora sp. ATCC 39149] Length = 288 Score = 43.6 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 18/142 (12%), Positives = 43/142 (30%), Gaps = 1/142 (0%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSE 67 +F LD++ + A A+ V + Q S + Sbjct: 145 RDEFRQAVCTYLDLVALQLSAAHGPVQALERAAAVCDGWVFDRIRESLRIAQMQMHSPWD 204 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + + + + E+ ++ G + E L + + LRD+ +A ++ ++ Sbjct: 205 ELRELADRIGIPELGDVGAIMRSSGSEGAQVHETLRSRADSLRDQIRTDNLARAEAVTSR 264 Query: 128 ASAWIIGSLPFCVSTLVYFTSP 149 + + VY Sbjct: 265 LDIPGSLLVFVLLGFAVYPFIA 286 >gi|168206103|ref|ZP_02632108.1| putative pilus biogenesis protein [Clostridium perfringens E str. JGS1987] gi|169343782|ref|ZP_02864781.1| putative pilus biogenesis protein [Clostridium perfringens C str. JGS1495] gi|169298342|gb|EDS80432.1| putative pilus biogenesis protein [Clostridium perfringens C str. JGS1495] gi|170662446|gb|EDT15129.1| putative pilus biogenesis protein [Clostridium perfringens E str. JGS1987] Length = 339 Score = 43.6 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 55/144 (38%), Gaps = 9/144 (6%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESIS 70 F D+ + V++G+ + ++ +I D E RR+ + G +LS++ Sbjct: 4 FKDEASYICLNLSTYVKSGMSIGRSLDLIKNTVKDKKYKESLRRIEKKVLNGEALSKAFK 63 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + P + + GNL E L +R + K +K K+ + Sbjct: 64 EEGKLYP-----DLMKDMMRIGEESGNLEEVLEKCARNILAEKEIKNKIIKSLRYPVS-- 116 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNV 154 ++ L + V + P ++++ Sbjct: 117 -LLIGLIIMIFGYVTYILPQFVDM 139 >gi|313667330|ref|YP_004049731.1| Type II secretion system F domain [Oceanithermus profundus DSM 14977] gi|313153961|gb|ADR37811.1| Type II secretion system F domain [Oceanithermus profundus DSM 14977] Length = 406 Score = 43.2 bits (100), Expect = 0.015, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 70/184 (38%), Gaps = 11/184 (5%) Query: 5 IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 IK+R+ D+ + + V AG P+ +A+ I + E ++ Sbjct: 53 IKRRSGPLRLVDYVELYRGLAQMVSAGAPLLEALETIEEST------ERPQLAAVVRELH 106 Query: 64 SLSESISRMVRYMPLQE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L +++ M + ++ G L +AL +++ + K++ AKV+ Sbjct: 107 DLVRGGTKLAEAMRMTGKFPEAHIATVTAAEESGKLDKALYSMATAVDQLKDLYAKVKEA 166 Query: 123 SMEAKASAWIIGSLPFCVSTLVYF-TSPGYMNVLINDPRGHMLLGVAAAFML--IGIMVM 179 + + + + T + +M + + G + +A A L G++++ Sbjct: 167 MTYPLLILALTVGISYYLLTRLVPKILGQFMEIGLQQVPGPTKVTMAVADFLNRYGLILV 226 Query: 180 RLMI 183 L++ Sbjct: 227 VLIV 230 >gi|331089203|ref|ZP_08338105.1| hypothetical protein HMPREF1025_01688 [Lachnospiraceae bacterium 3_1_46FAA] gi|330405755|gb|EGG85284.1| hypothetical protein HMPREF1025_01688 [Lachnospiraceae bacterium 3_1_46FAA] Length = 425 Score = 43.2 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 22/156 (14%), Positives = 46/156 (29%), Gaps = 17/156 (10%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR----------------SEFR 53 + D+P ++ +++G+ + A I G+ + E Sbjct: 265 REMKLDYPQIINKFNLYIKSGMTIRKAWFKIAGEYEKDQKEKEQISAKACGRKKAYEEMV 324 Query: 54 RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDR 112 V+ G S E L E F ++S + L+E L + ++ Sbjct: 325 NVMYKISGGASEGECYEEYGIRCNLSEYRKFGMMLSQNLRKGTRGLTELLEREAEDAFEQ 384 Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 + AK K + L + ++ Sbjct: 385 RKNLAKKAGEEAGTKLMIPLFLMLIIVFAIVIVPAF 420 >gi|307721765|ref|YP_003892905.1| hypothetical protein Saut_1849 [Sulfurimonas autotrophica DSM 16294] gi|306979858|gb|ADN09893.1| hypothetical protein Saut_1849 [Sulfurimonas autotrophica DSM 16294] Length = 278 Score = 43.2 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 18/150 (12%), Positives = 58/150 (38%), Gaps = 5/150 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS----DPVRSEFRRVI 56 ++ IK R + +D P +D+++ + G +++A+ + + + E ++ Sbjct: 119 LQEQIKARIKRIENDLPIFIDLLIIILEGGGGLNNAIDKVTTEGESVLGPDLLEESKKFK 178 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 S + + +V ++ + + + G + N ++ L+ + + Sbjct: 179 NEFITYSS-DIAYTNLVNRTGSDSIATIVGFMRLSEETGIGVKSIFENQAQELKSMEMLN 237 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 + +A +M + + + V ++ F Sbjct: 238 IEKKAATMNIGITFVMFIFILPAVIAMIAF 267 >gi|220910052|ref|YP_002485363.1| type II secretion system protein [Cyanothece sp. PCC 7425] gi|219866663|gb|ACL47002.1| type II secretion system protein [Cyanothece sp. PCC 7425] Length = 406 Score = 43.2 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 43/134 (32%), Gaps = 7/134 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 R+G+P+ ++ ++ + + + S + G LS ++ R Sbjct: 275 FCRTFGSLSRSGVPILTSLEIVSETAGNQIISNAINEARKEVQSGGMLSTALQR------ 328 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + +T + + G L + L ++ D K ME A + G + Sbjct: 329 EKIFPTLATQMISVGEETGELDKMLMKVADFYEDEVEQAVKALTSIMEPIMIAVLGGMVG 388 Query: 138 FCVSTLVYFTSPGY 151 + + + Sbjct: 389 SILVAMYLPMFKIF 402 >gi|182625667|ref|ZP_02953436.1| putative pilus biogenesis protein [Clostridium perfringens D str. JGS1721] gi|177909069|gb|EDT71544.1| putative pilus biogenesis protein [Clostridium perfringens D str. JGS1721] Length = 339 Score = 43.2 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 55/144 (38%), Gaps = 9/144 (6%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESIS 70 F D+ + V++G+P+ ++ +I D E +R+ + G +LS++ Sbjct: 4 FKDEASYICLNLSTYVKSGMPIGRSLDLIKNTVKDKKYKESLKRIEKKVLNGEALSKAFK 63 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 P + + GNL E L +R + K +K K+ + Sbjct: 64 EEGNLYPDLMKD-----MMKIGEESGNLEEVLEKCARNILAEKEIKNKIIKSLRYPVS-- 116 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNV 154 ++ L + V + P ++++ Sbjct: 117 -LLIGLIIMIFGYVTYILPQFVDM 139 >gi|225017405|ref|ZP_03706597.1| hypothetical protein CLOSTMETH_01331 [Clostridium methylpentosum DSM 5476] gi|224949815|gb|EEG31024.1| hypothetical protein CLOSTMETH_01331 [Clostridium methylpentosum DSM 5476] Length = 329 Score = 43.2 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 18/154 (11%), Positives = 52/154 (33%), Gaps = 2/154 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++++R + + P ++ I + +RA V + + + ++ E I Sbjct: 176 IVQQRREEIEAELPRFVNTIEQELRASRDVLNILKSYQRNAGHAMKRELEITIADMAS-G 234 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + +++RM + +S + + + LS + + K K++A+ Sbjct: 235 NEENALTRMESRIGSTMLSDVVRGLISVKRGDNGIM-YFQMLSMTFKQLELQKLKLEAMK 293 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 K + L + + + + Sbjct: 294 QPGKMRKYSFMLLGCFLLMYLGVLGYVVLEAFGD 327 >gi|302864763|ref|YP_003833400.1| Type II secretion system F domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315501057|ref|YP_004079944.1| type ii secretion system f domain protein [Micromonospora sp. L5] gi|302567622|gb|ADL43824.1| Type II secretion system F domain [Micromonospora aurantiaca ATCC 27029] gi|315407676|gb|ADU05793.1| Type II secretion system F domain protein [Micromonospora sp. L5] Length = 287 Score = 43.2 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 19/140 (13%), Positives = 44/140 (31%), Gaps = 1/140 (0%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSE 67 +F LD++ + A ++ V R + L + S + Sbjct: 144 RDEFRQAVCTYLDLVALQLSAAHGPVQSLERAAAVCDGWVFDRIREALRLAQLQMHSPWD 203 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + + + + E+ ++ G + E L + + LRD+ +A + +K Sbjct: 204 ELQELAERIGIPELGDVGAIMRSSGSEGAQVHETLRSRADSLRDQIRTDNLARAEGVTSK 263 Query: 128 ASAWIIGSLPFCVSTLVYFT 147 + + VY Sbjct: 264 LDIPGSLLVFVLLGFAVYPF 283 >gi|238922470|ref|YP_002935983.1| hypothetical protein EUBREC_0044 [Eubacterium rectale ATCC 33656] gi|238874142|gb|ACR73849.1| Hypothetical protein EUBREC_0044 [Eubacterium rectale ATCC 33656] Length = 408 Score = 43.2 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 16/121 (13%), Positives = 36/121 (29%), Gaps = 11/121 (9%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSD---------PVRSEFRRV 55 K+R + ++P + + + +G+ V A I + P E Sbjct: 250 KERNIQLQLEYPEIVSKMAVLMGSGMTVEQAWNRITARYLDERKNNDKNIMPAYEEMLVT 309 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKN 114 G++ ++ + + L +I + E L S D + Sbjct: 310 EREISDGVTGRKAYAGFAERVKLPCYQKLVRIILQSIHKGSKGVCEMLEKESEDAFDERR 369 Query: 115 M 115 + Sbjct: 370 L 370 >gi|311112132|ref|YP_003983354.1| type II secretion system protein [Rothia dentocariosa ATCC 17931] gi|310943626|gb|ADP39920.1| type II secretion system protein [Rothia dentocariosa ATCC 17931] Length = 474 Score = 43.2 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 18/140 (12%), Positives = 45/140 (32%), Gaps = 6/140 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L+++ +RAGL ++ A+ + +E L L++S Sbjct: 336 MLELLAAQLRAGLGLTGALQALGRAL-AHEERAISDALEHITLTLTVSADWQAAWDGYDH 394 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME-----AKASAWII 133 + + +++ G S L + + R + A+ + + + Sbjct: 395 PLLRELARILAPAYSAGTPSSALLRHCAATYRLEERRAAERASAKLAVALVLPLGLCSLP 454 Query: 134 GSLPFCVSTLVYFTSPGYMN 153 + + +V PG + Sbjct: 455 AFICCGIIPIVISLLPGLLA 474 >gi|239980168|ref|ZP_04702692.1| integral membrane protein [Streptomyces albus J1074] gi|291452022|ref|ZP_06591412.1| integral membrane protein [Streptomyces albus J1074] gi|291354971|gb|EFE81873.1| integral membrane protein [Streptomyces albus J1074] Length = 307 Score = 43.2 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 58/137 (42%), Gaps = 4/137 (2%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESISRMVRYMPL 78 LD++ S+ G + +A+ S R + + S +++ + + + Sbjct: 172 LDLVSMSLAGGRGLPEALMAAAEVSDGWAAKRIRNALNDARITGHSQWQALGELGEELGI 231 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 +E+ + +++ + G + E+LA+ + +R R+ + + + K+ + ++ L Sbjct: 232 EELKDLAASLALVADDGAKVRESLASRAETMRHREMAEIE---GAAGEKSQSMLVAQLLL 288 Query: 139 CVSTLVYFTSPGYMNVL 155 C LV+ P M V Sbjct: 289 CAGFLVFLIFPAAMRVF 305 >gi|156937801|ref|YP_001435597.1| type II secretion system protein [Ignicoccus hospitalis KIN4/I] gi|156566785|gb|ABU82190.1| type II secretion system protein [Ignicoccus hospitalis KIN4/I] Length = 311 Score = 43.2 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 50/147 (34%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + + P L + +VR+G+ V+ A I + + RR+ +L Sbjct: 72 RRVESVITNTPLMLQDLAVTVRSGVKVNAAFVEISDRDYGALSPYVRRIASMIYLLGLDL 131 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 R+V +E + I + GG E L S + R + + + + Sbjct: 132 LDAIRLVIRELPKETRKYFYFIEEAYESGGRAMEVLDKASELARRIREFELEREKTLKNQ 191 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMN 153 + + ++Y+ + Sbjct: 192 GFIILFSVLIFVATAAILYYLAVQMYA 218 >gi|157369021|ref|YP_001477010.1| type IV pilin biogenesis protein [Serratia proteamaculans 568] gi|157320785|gb|ABV39882.1| type II secretion system protein [Serratia proteamaculans 568] Length = 399 Score = 43.2 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 18/141 (12%), Positives = 42/141 (29%), Gaps = 6/141 (4%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVR 74 + ++AGLP+ + ++ + R + E G SE I+ Sbjct: 61 LIQFTRQLATLLQAGLPLVSGLQLLAAEHPSAAWRCLLRDISEQVRQGQPFSEVIA---- 116 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + +L G+L + L++ ++ ++ KV + Sbjct: 117 -GQHAIFPLIYRQLIAIGELTGHLEQCCLQLAQQQEAQQKLQKKVVKALRYPLFICAVAL 175 Query: 135 SLPFCVSTLVYFTSPGYMNVL 155 + + +V G Sbjct: 176 LVSILMLVMVLPEFAGVYQSF 196 >gi|153815435|ref|ZP_01968103.1| hypothetical protein RUMTOR_01670 [Ruminococcus torques ATCC 27756] gi|145847294|gb|EDK24212.1| hypothetical protein RUMTOR_01670 [Ruminococcus torques ATCC 27756] Length = 425 Score = 43.2 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 22/156 (14%), Positives = 46/156 (29%), Gaps = 17/156 (10%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR----------------SEFR 53 + D+P ++ +++G+ + A I G+ + E Sbjct: 265 REMKLDYPQIINKFNLYIKSGMTIRKAWFKIAGEYEKDQKEKEQISAKACGRKKAYEEMV 324 Query: 54 RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDR 112 V+ G S E L E F ++S + L+E L + ++ Sbjct: 325 NVMYKISGGASEGECYEEYGIRCNLSEYRKFGMMLSQNLRKGTRGLTELLEREAEDAFEQ 384 Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 + AK K + L + ++ Sbjct: 385 RKNLAKKAGEEAGTKLMIPLFLMLIIVFAIVIVPAF 420 >gi|78484987|ref|YP_390912.1| type II secretion system protein [Thiomicrospira crunogena XCL-2] gi|78363273|gb|ABB41238.1| type II secretion system protein F homolog [Thiomicrospira crunogena XCL-2] Length = 401 Score = 43.2 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 23/180 (12%), Positives = 64/180 (35%), Gaps = 12/180 (6%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65 KR D + + ++AG+P+ D + + + V + ++ G S Sbjct: 54 KRRKVTRRDVIVITSQLRQLLKAGVPLMDILDDLRRTYENEAVCEILSSIYKSMEGGESF 113 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S + + + G L + L NL ++ +++ +K + + + Sbjct: 114 S-----LALKNYEAVFGKVYVSLVAVGEKTGQLDQVLENLENTMKWEESLASKAKKVMIY 168 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA------FMLIGIMVM 179 A ++ ++ + V ++N + + +A + + IG++++ Sbjct: 169 PAIVATVVLAVVVLLMVFVVPELLSFINEMDGSLGFATVSLIATSHFIREYIVFIGLLLI 228 >gi|283956846|ref|ZP_06374319.1| general secretory pathway protein F [Campylobacter jejuni subsp. jejuni 1336] gi|283791572|gb|EFC30368.1| general secretory pathway protein F [Campylobacter jejuni subsp. jejuni 1336] Length = 393 Score = 43.2 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 21/181 (11%), Positives = 55/181 (30%), Gaps = 10/181 (5%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 ++F + GL V +A+ + +++++ L +L+++ Sbjct: 50 QRLKDENFILFFKELALLCEVGLSVQEAIREL---YLMHSCKIMKKILDNLILAQNLNQA 106 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 ++ + ++ G +SE +S++ + +++ Sbjct: 107 FENA-----NFGLNRAELALIKTAEKTGKISEVFNQISKLREKSLETQKQLKKAFRYPTL 161 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMINFD 186 I + V L H++L + GI + L + F Sbjct: 162 VFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFVTHVMLEIYNFLDGYGIFCILLFVIFI 221 Query: 187 V 187 V Sbjct: 222 V 222 >gi|330465091|ref|YP_004402834.1| type II secretion system protein [Verrucosispora maris AB-18-032] gi|328808062|gb|AEB42234.1| type II secretion system protein [Verrucosispora maris AB-18-032] Length = 287 Score = 43.2 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 15/145 (10%), Positives = 44/145 (30%), Gaps = 1/145 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 + +F LD++ + A ++ V + + + Sbjct: 139 RAEAAREEFRQAVCTYLDLVALQLSAAHGPVQSLERAAAICDGWVFERISEALRMAQMQM 198 Query: 64 -SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S + + + + + E+ ++ G + E L + + LRD+ +A Sbjct: 199 HSPWDELRDLADRIGIPELGDVGAIMQSSGSEGAQVHETLRSRADSLRDQIRTDNLARAE 258 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFT 147 + ++ + + +Y Sbjct: 259 GVTSRLDIPGALLVFVLLGFAIYPF 283 >gi|317500897|ref|ZP_07959108.1| hypothetical protein HMPREF1026_01051 [Lachnospiraceae bacterium 8_1_57FAA] gi|316897695|gb|EFV19755.1| hypothetical protein HMPREF1026_01051 [Lachnospiraceae bacterium 8_1_57FAA] Length = 425 Score = 43.2 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 22/156 (14%), Positives = 46/156 (29%), Gaps = 17/156 (10%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR----------------SEFR 53 + D+P ++ +++G+ + A I G+ + E Sbjct: 265 REMKLDYPQIINKFNLYIKSGMTIRKAWFKIAGEYEKDQKEKEQISAKACGRKKAYEEMV 324 Query: 54 RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDR 112 V+ G S E L E F ++S + L+E L + ++ Sbjct: 325 NVMYKISGGASEGECYEEYGIRCNLSEYRKFGMMLSQNLRKGTRGLTELLEREAEDAFEQ 384 Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 + AK K + L + ++ Sbjct: 385 RKNLAKKAGEEAGTKLMIPLFLMLIIVFAIVIVPAF 420 >gi|254246405|ref|ZP_04939726.1| Type II secretion system protein [Burkholderia cenocepacia PC184] gi|124871181|gb|EAY62897.1| Type II secretion system protein [Burkholderia cenocepacia PC184] Length = 404 Score = 43.2 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 22/159 (13%), Positives = 49/159 (30%), Gaps = 13/159 (8%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV---IETQHLGLSLSESISRMVRYMP 77 + ++AGLP++ + ++V S+ + + L SL S+ R +P Sbjct: 71 RQLASLLQAGLPLAPSFEMLVRTSTREGVPDPTGSPQNLRRAALHRSLPRYPSKFGRCIP 130 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + S S + + L ++ K++A A ++ Sbjct: 131 SRSRSAGSGSLGI----------VLTRIAEHRERADAQWRKLRAALAYPAAVILFALAIS 180 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + V T + +A +G+ Sbjct: 181 AALMVWVVPTFRQIFDGFGAALPAPTRALLALYRRAVGM 219 >gi|238853651|ref|ZP_04644019.1| type II secretory pathway/competence component [Lactobacillus gasseri 202-4] gi|282851508|ref|ZP_06260873.1| type II secretion system F domain protein [Lactobacillus gasseri 224-1] gi|238833689|gb|EEQ25958.1| type II secretory pathway/competence component [Lactobacillus gasseri 202-4] gi|282557476|gb|EFB63073.1| type II secretion system F domain protein [Lactobacillus gasseri 224-1] Length = 326 Score = 43.2 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 58/167 (34%), Gaps = 14/167 (8%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 +D + +++ G ++ ++ ++ S + + ++ + Sbjct: 14 FIDYLRQALINGYSLNASLKLLPKIWSGDSNQLVYISKQVEEG--------RQLGDVLHE 65 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 S + + GNL L LS+++R + K++ ++ +L Sbjct: 66 VGFSSTLAAQINMAIIDGNLLSCLDQLSKLIRLKNKQLKKLRGELAYPALLIGMMVTLLI 125 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 C+ T + ND +++LG ++IG + +I Sbjct: 126 CMQTFLKTEMSD------NDWTSNVMLGGLVMLVIIGAFFISKVIRL 166 >gi|307132569|ref|YP_003884585.1| type 4 fimbrial assembly protein pilC [Dickeya dadantii 3937] gi|306530098|gb|ADN00029.1| Type 4 fimbrial assembly protein pilC [Dickeya dadantii 3937] Length = 401 Score = 43.2 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 60/183 (32%), Gaps = 21/183 (11%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 + + ++AGLP+ DA+ ++ Q R + + + G +LSE ++ Sbjct: 60 QLSVIIRQLATLLQAGLPLLDALDLLGRQHEKAGWRCLLQEIRQQVAQGRALSEVLADYP 119 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 P+ + + +L G L + A L+ +++ + KV + Sbjct: 120 AAFPM-----MCSSLVAVGELTGKLDDCCARLANYQENQRQLTGKVIKALRYPAFVIAVG 174 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGH---------------MLLGVAAAFMLIGIMV 178 + + TLV G MLL +L+G Sbjct: 175 LLVALLMLTLVLPEFAGLYASFDAPLPWLTRMMLRLSDALSRHGMLLVTLPVVILLGYRQ 234 Query: 179 MRL 181 +R Sbjct: 235 IRR 237 >gi|261495427|ref|ZP_05991875.1| pili/fimbriae biogenesis protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308932|gb|EEY10187.1| pili/fimbriae biogenesis protein [Mannheimia haemolytica serotype A2 str. OVINE] Length = 369 Score = 43.2 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 20/141 (14%), Positives = 53/141 (37%), Gaps = 6/141 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRM 72 ++ + L + V + +P+ A+++++ + + +I+ G + S+S+ ++ Sbjct: 29 EEVNSLLSQLALLVNSAMPLKQALSMLLQNCRNIRLYLWLNELIQHIERGYAFSQSLEKL 88 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 ++ QE + + G L L NL+ + + KV+ + I Sbjct: 89 GEFVTNQE-----IQLIKMGEQSGKLGIMLTNLAESRAKLEKLAKKVKKILFYPVIVLLI 143 Query: 133 IGSLPFCVSTLVYFTSPGYMN 153 +L + L+ Sbjct: 144 SLALSIGLLVLIVPQFAQLYG 164 >gi|153953831|ref|YP_001394596.1| ExeF4 [Clostridium kluyveri DSM 555] gi|219854447|ref|YP_002471569.1| hypothetical protein CKR_1104 [Clostridium kluyveri NBRC 12016] gi|146346712|gb|EDK33248.1| ExeF4 [Clostridium kluyveri DSM 555] gi|219568171|dbj|BAH06155.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 328 Score = 43.2 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 19/145 (13%), Positives = 46/145 (31%), Gaps = 7/145 (4%) Query: 26 SVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 + G+P+ A ++ Q + + ++ + + F Sbjct: 1 MLNTGIPLFKAFEILETQYNKSRLKVALKTVKEDVIKGN----SIHESMKKVKNIFPQFM 56 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 + G L E L LS + N+ A V+ I+ + + L+ Sbjct: 57 IETVKIGEEAGRLEEILKRLSSYYEKQYNIMAAVKNALTYPLL---ILITSIIVMIYLMT 113 Query: 146 FTSPGYMNVLINDPRGHMLLGVAAA 170 P +++++++ +L A Sbjct: 114 KIIPQFVDIILSAGGEVPILTKAVI 138 >gi|238787295|ref|ZP_04631094.1| General secretion pathway protein [Yersinia frederiksenii ATCC 33641] gi|238724557|gb|EEQ16198.1| General secretion pathway protein [Yersinia frederiksenii ATCC 33641] Length = 383 Score = 43.2 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 23/180 (12%), Positives = 55/180 (30%), Gaps = 12/180 (6%) Query: 1 MKHLIKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIET 58 + + K + D + V A +P+ + + ++ QS V++ + Sbjct: 36 LTTRVTKYFNRVSRVDLVLMTRQMSILVNAAIPLVEVLEIVEKQSVKGNVKNMIHEIRNK 95 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G S S+S+ + + ++ G+L L+ L+ + ++ K Sbjct: 96 VIEGHSFSDSLLLYSN-----VFNTLYRAMITAGEVSGHLDIVLSKLAEHIEQTYRVQKK 150 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + I + + L+ P + L M+ V Sbjct: 151 IIQSLIYPGFLILISIGV---IVVLLSVVIPSLIEQF--SFYEQALPLSTRVLMVSSYWV 205 >gi|323702225|ref|ZP_08113891.1| hypothetical protein DesniDRAFT_1103 [Desulfotomaculum nigrificans DSM 574] gi|323532715|gb|EGB22588.1| hypothetical protein DesniDRAFT_1103 [Desulfotomaculum nigrificans DSM 574] Length = 260 Score = 42.8 bits (99), Expect = 0.019, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 58/182 (31%), Gaps = 1/182 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + ++R + + + + G ++ ++ + + +P+ SE ++ +H Sbjct: 74 INLVREERIRQVREKAKDFVMAASGLYSTGQSDTEVISTMSKRLPEPLASELHEMVVQRH 133 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + +S F + +++ A AN L M++K+ Sbjct: 134 MNDQVSYPSMLRRLGEKYNVPEFAAASAIIEAGDIVGGPVAKANGLMKLGAAIRMRSKLL 193 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +A I V L L G LL + AF + I + Sbjct: 194 LERKKANLEPKIASMFVILVLGLGLMLDITIWRDLYQQS-GKFLLAIGLAFEIALIFIAI 252 Query: 181 LM 182 + Sbjct: 253 KL 254 >gi|115351485|ref|YP_773324.1| type II secretion system protein [Burkholderia ambifaria AMMD] gi|115281473|gb|ABI86990.1| type II secretion system protein [Burkholderia ambifaria AMMD] Length = 393 Score = 42.8 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 55/171 (32%), Gaps = 12/171 (7%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQHLGLSLSESISRM 72 L + + AGL + +A+ + ++ + R++ G LS++++R Sbjct: 56 ALALFLQELSTLLDAGLVLFEALEALRDKADSGKDAKYVIDRLLAVMVEGQPLSKALARQ 115 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P S+ G L L + + ++ +V + + Sbjct: 116 PAIFPP-----LLVATVESSEGSGQLPVVLKRYQQYEVRIEQVRKRVTGALIYPAVVIGV 170 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIN-DPRGHMLLGVAAAF----MLIGIMV 178 ++ ++ V L P H +L A M +G+ V Sbjct: 171 GIAILLFMAFFVIPRFAVVFESLATLPPTAHAMLWWANLLRENGMAVGLAV 221 >gi|218280897|ref|ZP_03487515.1| hypothetical protein EUBIFOR_00073 [Eubacterium biforme DSM 3989] gi|218217784|gb|EEC91322.1| hypothetical protein EUBIFOR_00073 [Eubacterium biforme DSM 3989] Length = 332 Score = 42.8 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 63/165 (38%), Gaps = 10/165 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + ++ GL V D + ++VG V +++ + G S ++++ Sbjct: 10 FTSELALAISNGLQVEDGLKMLVG-FDADVSICAKKLEDIMKQGYSFTDALKE------S 62 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 +E + + V Q GNL LS +K + ++Q +I + Sbjct: 63 KEFDEYMIQMVVVGQSIGNLDVVFKELSTYYARQKELNYQIQDAITYPF---VLILMMFV 119 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 V+TL++ P + N+L L+ A IG ++ ++ Sbjct: 120 IVATLIFKVFPIFENILSQMSMSLSLMYSARILSYIGFFILLFIL 164 >gi|168210794|ref|ZP_02636419.1| putative pilus biogenesis protein [Clostridium perfringens B str. ATCC 3626] gi|170711113|gb|EDT23295.1| putative pilus biogenesis protein [Clostridium perfringens B str. ATCC 3626] Length = 339 Score = 42.8 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 55/144 (38%), Gaps = 9/144 (6%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESIS 70 F D+ + V++G+P+ ++ +I D E +R+ + G +LS++ Sbjct: 4 FKDEASYICLNLSTYVKSGMPIGRSLDLIKNTVKDKKYKESLKRIEKKVLNGEALSKAFK 63 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 P + + GNL E L +R + K +K K+ + Sbjct: 64 EEGNLYP-----DLMKDMMKIGEESGNLEEVLEKCARNILAEKEIKNKIIKSLRYPIS-- 116 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNV 154 ++ L + V + P ++++ Sbjct: 117 -LLIGLIIMIFGYVTYILPQFVDM 139 >gi|225570285|ref|ZP_03779310.1| hypothetical protein CLOHYLEM_06381 [Clostridium hylemonae DSM 15053] gi|225160817|gb|EEG73436.1| hypothetical protein CLOHYLEM_06381 [Clostridium hylemonae DSM 15053] Length = 349 Score = 42.8 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 16/149 (10%), Positives = 44/149 (29%), Gaps = 5/149 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + +++G+ + V +++ +S P E + Q + Sbjct: 11 NMEISAFCSQMAMILQSGISSVEGVTLMLEESKSP--DEQELLTNMQKTLFETGSFYEAL 68 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 V + + + + G L + + +LS + V+ + Sbjct: 69 VSTCSFPD---YMLQMVNIGEQTGKLDDVMKSLSEHYDREAAIAQSVKNAVTYPLIMICM 125 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + + + T V L ++ G Sbjct: 126 MLLVIVVLITKVMPIFNQVFRQLGSEMTG 154 >gi|168214417|ref|ZP_02640042.1| putative pilus biogenesis protein [Clostridium perfringens CPE str. F4969] gi|170714108|gb|EDT26290.1| putative pilus biogenesis protein [Clostridium perfringens CPE str. F4969] Length = 339 Score = 42.8 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 55/144 (38%), Gaps = 9/144 (6%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESIS 70 F D+ + V++G+P+ ++ +I D E +R+ + G +LS++ Sbjct: 4 FKDEASYICLNLSTYVKSGMPIGRSLDLIKNTVKDKKYKESLKRIEKKVLNGEALSKAFK 63 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 P + + GNL E L +R + K +K K+ + Sbjct: 64 EEGNLYP-----DLMKDMMKIGEESGNLEEVLEKCARNILAEKEIKNKIIKSLRYPVS-- 116 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNV 154 ++ L + V + P ++++ Sbjct: 117 -LLIGLIIMIFGYVTYILPQFVDM 139 >gi|260102546|ref|ZP_05752783.1| competence protein [Lactobacillus helveticus DSM 20075] gi|260083640|gb|EEW67760.1| competence protein [Lactobacillus helveticus DSM 20075] Length = 330 Score = 42.8 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 63/178 (35%), Gaps = 14/178 (7%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KK + LD + S+ G + +++ ++ + +++++ G S Sbjct: 5 KKDRLNSEEQLV-FLDYLKHSLENGFSLINSIELMPVLWPKK-KELMQKLVKRMKEGNSF 62 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S + ++ S + + GNL E L L+ + R ++ K++A Sbjct: 63 SVELIQLG-------FSKTTVTQVNLALQQGNLIECLNQLAILSRLKQEQVKKLRAELSY 115 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 A ++ L + + + G +++ +L GI + +I Sbjct: 116 PFVLAIMMVILLVFMQSFISTQFNDRSEY-----SGDLIMLGLIGAVLAGIYFLARII 168 >gi|149182919|ref|ZP_01861377.1| comG operon protein 2 [Bacillus sp. SG-1] gi|148849368|gb|EDL63560.1| comG operon protein 2 [Bacillus sp. SG-1] Length = 345 Score = 42.8 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 44/131 (33%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77 + + +G+ ++ A+ + QS P+ E R+I+ +G S ES+ + Sbjct: 214 FSREMSYLLNSGMSINQALTEVGSQSYRPLFKELAERMIQDLRIGKSFPESVEYFGLFTD 273 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G L L S+ + + K ++ +I + Sbjct: 274 G------LIEVIRHGERRGQLPRELFTYSQFCMETLEVSGKKLLSVIQPAVFLFIGVFIL 327 Query: 138 FCVSTLVYFTS 148 +++ Sbjct: 328 LIYFSIMIPLF 338 Score = 40.1 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 20/163 (12%), Positives = 57/163 (34%), Gaps = 7/163 (4%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R K + D L + + G +++A+ + ++++ G SLS+ Sbjct: 4 RVKKTIKDKGAFLKRLGELLEIGYSLTEAIEFVFIGHYRQQDKLKQKMLFHLQNGSSLSD 63 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 S+ + + ++ G ++E L + L R+ + +Q + Sbjct: 64 SLKYLGLPLQ-------VCSQIYFAEKHGRMAETLISAGEYLIARQKDRQALQKVMTYPI 116 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 +I+ + + ++++ + L P + + + Sbjct: 117 VLLFILVGVMILLKSVLFPQFHSLYSSLGYTPENRIGIILVFI 159 >gi|154508104|ref|ZP_02043746.1| hypothetical protein ACTODO_00597 [Actinomyces odontolyticus ATCC 17982] gi|153797738|gb|EDN80158.1| hypothetical protein ACTODO_00597 [Actinomyces odontolyticus ATCC 17982] Length = 425 Score = 42.8 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 53/181 (29%), Gaps = 14/181 (7%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVI-----------VGQSSDPVRSEFRRVIETQHLG 62 + + + +RAG P S A + V S V E+ R Sbjct: 102 RELSLLVAEVATRLRAGAPTSLAWGLALARIDAGGSVGVDDSYPAVLDEWARAPTRWRSL 161 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + + + + LG L++ L + + D + ++ + Sbjct: 162 RRVERAPGVAASRV---SAASVALACRFSHDLGAPLADVLDAIGSAIDDAQALEEARRVA 218 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + SA ++ +LP + G M V A G+ R + Sbjct: 219 AAGPLMSARVLAALPLVGIACALALGASPWQFYMGGAAGRMCAFVGVAAWAAGVASCRRI 278 Query: 183 I 183 + Sbjct: 279 L 279 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 18/143 (12%), Positives = 42/143 (29%), Gaps = 10/143 (6%) Query: 3 HLIKKRTAKFLDDF--PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 I R + + A D++ ++ G + A+ + S + Sbjct: 276 RRILARCRRVEEGIDGALACDLVASALACGAAIPRALDALADAS---TTEALTWAAASLR 332 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + +++ + + G + LA + R + + AK Q Sbjct: 333 LGATWADAWEDTPEWSHPLRD-----ALEASWTSGTSPETLLARSAAWERRSRLVDAKAQ 387 Query: 121 ALSMEAKASAWIIGSLPFCVSTL 143 A + + + +L Sbjct: 388 AEELSVRLVGPLGVFFLPAFLSL 410 >gi|90417995|ref|ZP_01225907.1| possible general secretory pathway protein [Aurantimonas manganoxydans SI85-9A1] gi|90337667|gb|EAS51318.1| possible general secretory pathway protein [Aurantimonas manganoxydans SI85-9A1] Length = 404 Score = 42.8 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 47/129 (36%), Gaps = 6/129 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + + AG+ + A+ +I + + R + + +G SL+E+ P Sbjct: 72 VTEDLSALLTAGVALDRAILIISQTATKPVIAVLLRDLHQAISMGQSLAEATGNHPTAFP 131 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 I ++ G L E LA L+R + + ++ ++ + A + Sbjct: 132 -----ANYVKIVQVAEAAGTLPETLAVLARERQRSEELRRRISSALAYPGFLAAAAVGVL 186 Query: 138 FCVSTLVYF 146 V +V Sbjct: 187 AFVLAVVIP 195 >gi|222083143|ref|YP_002542508.1| cytochrome biogenesis protein [Agrobacterium radiobacter K84] gi|221727822|gb|ACM30911.1| cytochrome biogenesis protein [Agrobacterium radiobacter K84] Length = 385 Score = 42.8 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 12/140 (8%), Positives = 39/140 (27%), Gaps = 5/140 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + I + AGL + A+ + + + + L+ ++ S Sbjct: 46 ANLQRFFADIAMLMDAGLGLDRALKAVAADQGN---KANCMLAKELTERLASGKAPSEAF 102 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + + G L ++ L ++ ++++ ++ Sbjct: 103 RAIGGAGQD--IAALIASGEQTGKLPVIFGVIANNLERQRAQRSQIAEAIAYPAFLILMM 160 Query: 134 GSLPFCVSTLVYFTSPGYMN 153 + V+ + Sbjct: 161 FAALLIVTFFLVPAILPIFE 180 >gi|293391603|ref|ZP_06635937.1| putative type IV pilin secretion protein [Aggregatibacter actinomycetemcomitans D7S-1] gi|22001226|gb|AAM88346.1|AF521703_3 PilC [Aggregatibacter actinomycetemcomitans] gi|290952137|gb|EFE02256.1| putative type IV pilin secretion protein [Aggregatibacter actinomycetemcomitans D7S-1] Length = 407 Score = 42.8 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 22/165 (13%), Positives = 66/165 (40%), Gaps = 9/165 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV-IETQHLGLSLSESISR 71 D L + +RA +P+ +++ +++ ++ + + R ++ GL+ S+++ + Sbjct: 57 NADICTLLSQLATLLRAAVPLKNSLQILLQNCTNIALNRWLRCLLQEIESGLAFSQALEQ 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 Y+ QE + ++ G L+ +++ + ++ K+Q + + Sbjct: 117 QGLYLTYQER-----QLIQVGEMTGKLAAVCHEIAQHKQQALALQRKIQKILLYPLL--- 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 ++G + L+ F P + + N + + G+ Sbjct: 169 VLGISLILTALLLLFIVPQFAAMYDNSNAQLPVFTQVLLALSQGL 213 Score = 38.2 bits (87), Expect = 0.53, Method: Composition-based stats. Identities = 14/145 (9%), Positives = 45/145 (31%), Gaps = 5/145 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR----VIETQHLGL 63 R + + ++AG+P++ A+ + + ++ +I L Sbjct: 257 RIVQLSR-LVGFSRSLFLMLQAGIPLNQALQSFLPKQQSWQSKPQQQGDWLLITEVQSAL 315 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + + Q + + + G L + L ++ + + + + + + Sbjct: 316 HWIQQGYPFSASVSGQIFPPAAQQMLQVGEQSGQLPKMLQFIANDHQQQLDHQIDLLSQM 375 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTS 148 +E I G + + + Sbjct: 376 LEPLLMVIIGGLIGLIMLGMYLPIF 400 >gi|168215471|ref|ZP_02641096.1| putative pilus biogenesis protein [Clostridium perfringens NCTC 8239] gi|182382167|gb|EDT79646.1| putative pilus biogenesis protein [Clostridium perfringens NCTC 8239] Length = 339 Score = 42.8 bits (99), Expect = 0.022, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 55/144 (38%), Gaps = 9/144 (6%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESIS 70 F D+ + V++G+P+ ++ +I D E +R+ + G +LS++ Sbjct: 4 FKDEASYICLNLSTYVKSGMPIGRSLDLIKNTVKDKKYKESLKRIEKKVLNGEALSKAFK 63 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 P + + GNL E L +R + K +K K+ + Sbjct: 64 EEGNLYP-----DLMKDMMKIGEESGNLEEVLEKCARNILAEKEIKNKIIKSLRYPVS-- 116 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNV 154 ++ L + V + P ++++ Sbjct: 117 -LLIGLIIMIFGYVTYILPQFVDM 139 >gi|110798866|ref|YP_696526.1| putative pilus biogenesis protein [Clostridium perfringens ATCC 13124] gi|110673513|gb|ABG82500.1| putative pilus biogenesis protein [Clostridium perfringens ATCC 13124] Length = 339 Score = 42.8 bits (99), Expect = 0.022, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 55/144 (38%), Gaps = 9/144 (6%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESIS 70 F D+ + V++G+P+ ++ +I D E +R+ + G +LS++ Sbjct: 4 FKDEASYICLNLSTYVKSGMPIGRSLDLIKNTVKDKKYKESLKRIEKKVLNGEALSKAFK 63 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 P + + GNL E L +R + K +K K+ + Sbjct: 64 EEGNLYP-----DLMKDMMKIGEESGNLEEVLEKCARNILAEKEIKNKIIKSLRYPIS-- 116 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNV 154 ++ L + V + P ++++ Sbjct: 117 -LLIGLIIMIFGYVTYILPQFVDM 139 >gi|300742222|ref|ZP_07072243.1| putative bacterial type II secretion system protein F domain protein [Rothia dentocariosa M567] gi|300381407|gb|EFJ77969.1| putative bacterial type II secretion system protein F domain protein [Rothia dentocariosa M567] Length = 474 Score = 42.8 bits (99), Expect = 0.022, Method: Composition-based stats. Identities = 19/140 (13%), Positives = 45/140 (32%), Gaps = 6/140 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L+++ +RAGL ++ A+ + IE L L++S Sbjct: 336 MLELLAAQLRAGLGLTGALQALGRAL-AHEERAISDAIEHITLTLTVSADWQAAWDGYDH 394 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME-----AKASAWII 133 + + +++ G S L + + R + A+ + + + Sbjct: 395 PLLRELARILAPAYSAGTPSSALLRHCAATYRLEERRAAERASAKLAVALVLPLGLCSLP 454 Query: 134 GSLPFCVSTLVYFTSPGYMN 153 + + +V PG + Sbjct: 455 AFICCGIIPIVISLLPGLLA 474 >gi|167038601|ref|YP_001666179.1| hypothetical protein Teth39_2222 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320114926|ref|YP_004185085.1| type II secretion system F domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857435|gb|ABY95843.1| hypothetical protein Teth39_2222 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928017|gb|ADV78702.1| Type II secretion system F domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 241 Score = 42.8 bits (99), Expect = 0.022, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 48/137 (35%), Gaps = 2/137 (1%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 ++ P A++I + + G+ + ++ IV VR G SL ++++ Sbjct: 103 EEELPAAIEIFINGLEVGMNKENIISYIVRTREGVVRDLLHEAQVRLDTGSSLKDALTYA 162 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM--EAKASA 130 F +I+ + ++ E L L +R+ K A + Sbjct: 163 ASKSLNDHFKRFVKIITGEFASEQDIKENLEELLDEVREINYNKKTESASVLDNSLFFPI 222 Query: 131 WIIGSLPFCVSTLVYFT 147 ++ +P + + F Sbjct: 223 FLGYFIPILIIFALPFV 239 >gi|148656328|ref|YP_001276533.1| hypothetical protein RoseRS_2203 [Roseiflexus sp. RS-1] gi|148568438|gb|ABQ90583.1| hypothetical protein RoseRS_2203 [Roseiflexus sp. RS-1] Length = 316 Score = 42.8 bits (99), Expect = 0.023, Method: Composition-based stats. Identities = 18/192 (9%), Positives = 60/192 (31%), Gaps = 11/192 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIE-- 57 + ++ A+ P + + VRAG + A+ ++ P+++E+ +E Sbjct: 119 LWFEEQRYIARIDAALPAFVGRLEAQVRAGSGLQPAIEKVIADMPASPLKAEWSWFLERL 178 Query: 58 -TQHLGLSLSESISRMVRYMPLQEVSFFSTVI----SVQSQLGGNLSEALANLSRILRDR 112 L+ + + +T + Q L + + ++ Sbjct: 179 GQPIANGFLATAATVCAALRAQTPSRRHATFLSHLEIAIEQPHAALVQRIRAAYEAMQAS 238 Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM---LLGVAA 169 + + + + + + + ++ ++ G + +L + Sbjct: 239 DRRASMLATELSQMRNTGIALFLINVGITLYLFVVQNERFLTAYRSEPGLIVGAVLALVV 298 Query: 170 AFMLIGIMVMRL 181 + L+G ++ Sbjct: 299 SLPLVGGYLLGR 310 >gi|326330148|ref|ZP_08196459.1| putative integral membrane protein [Nocardioidaceae bacterium Broad-1] gi|325951961|gb|EGD43990.1| putative integral membrane protein [Nocardioidaceae bacterium Broad-1] Length = 298 Score = 42.8 bits (99), Expect = 0.024, Method: Composition-based stats. Identities = 17/153 (11%), Positives = 51/153 (33%), Gaps = 4/153 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL- 63 K+ +F +D++ G V A+ V + + Sbjct: 148 AKRARLEFTRALGAYIDLVALERNNGSGVRQAMEAAAEVGDSWVFTRLTEELARSRWSGV 207 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 E++ + + L ++ F+ ++ + + G ++ L S+ +R + ++ + Sbjct: 208 PPWEALRTLAEELGLPDLEDFADIMRLSGEEGASVYTNLRARSQAMR-TAMLNDELTEAN 266 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 + + L L+ +P + ++ Sbjct: 267 AVGERMSIPASLLGVVFMALL--LAPSLLRMVY 297 >gi|319785503|ref|YP_004144979.1| type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171391|gb|ADV14929.1| Type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 405 Score = 42.8 bits (99), Expect = 0.024, Method: Composition-based stats. Identities = 19/183 (10%), Positives = 61/183 (33%), Gaps = 22/183 (12%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D + + AG V A+ + G+++ R + + V++ G ++E+ + + Sbjct: 67 DLSRLFSELSVLLNAGFTVDRALGAVISGEANGQRRQQLQSVLDLTTGGRPIAEAFAGL- 125 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + ++ + + G ++ L+ +A + ++ Sbjct: 126 -----RGITSDVAALLASGERSGKMAYICQRLADTYEATAKRRAAIIEALAYPAFLLLVM 180 Query: 134 GSLPFCVSTLVYF---------TSPGYMNVLINDPRGHM------LLGVAAAFMLIGIMV 178 ++T++ ++P + + G + + +AA L+ + Sbjct: 181 SGALVILATVLVPALEPIFEGSSAPKPFTMTVLSAFGTVFRDYPFVFPLAAVLGLLAWLF 240 Query: 179 MRL 181 + Sbjct: 241 LSR 243 >gi|261868723|ref|YP_003256645.1| PilC [Aggregatibacter actinomycetemcomitans D11S-1] gi|261414055|gb|ACX83426.1| PilC [Aggregatibacter actinomycetemcomitans D11S-1] Length = 407 Score = 42.8 bits (99), Expect = 0.024, Method: Composition-based stats. Identities = 22/171 (12%), Positives = 64/171 (37%), Gaps = 6/171 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV-IETQHLGLSLSESISR 71 D L + ++A +P+ +++ +++ ++ + + R ++ GL+ S+++ + Sbjct: 57 NADICTLLSQLATLLQAAVPLKNSLQILLQNCTNIALNRWLRCLLQEIESGLAFSQALEQ 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 Y+ QE + ++ G L+ +++ + ++ K+Q + + Sbjct: 117 QGLYLTYQER-----QLIQVGEMTGKLAAVCHEIAQHKQQALALQRKIQKILLYPLLVLG 171 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 I L + + + + +A + L G LM Sbjct: 172 ISLILTALLLLFIVPQFAAMYDNSNAQLPVFTQVLLALSQGLQGYWFALLM 222 Score = 35.1 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 15/145 (10%), Positives = 46/145 (31%), Gaps = 5/145 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR----VIETQHLGL 63 R + + ++AG+P++ A+ + + ++ +IE L Sbjct: 257 RIVQLSR-LVGFSHSLFLMLQAGIPLNQALQSFLPKQQSWQTKPQQQGDWLLIEGVQSAL 315 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + + Q + + + G L + L ++ + + + + + + Sbjct: 316 HWIQQGYPFSASVSGQIFPPAAQQMLQVGEQSGQLPKMLQFIANDHQQQLDHQIDLLSQM 375 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTS 148 +E I G + + + Sbjct: 376 LEPLLMVIIGGLIGLIMLGMYLPIF 400 >gi|253996443|ref|YP_003048507.1| type II secretion system protein [Methylotenera mobilis JLW8] gi|253983122|gb|ACT47980.1| type II secretion system protein [Methylotenera mobilis JLW8] Length = 395 Score = 42.8 bits (99), Expect = 0.024, Method: Composition-based stats. Identities = 19/155 (12%), Positives = 53/155 (34%), Gaps = 6/155 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + ++ + +GL + +A+ + + ++ +V+ GL LS ++ ++ Sbjct: 58 NLMLFSQELLALLESGLSLVEAIEALAEKEQQAESKAILNQVMGALFEGLPLSTALEKVP 117 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + S+ G++ +ALA ++ K+ S+ + Sbjct: 118 Q-----VFTPLYIALIRASERTGDMVQALARHVAYQTQIDAVRKKIITASIYPVLLIIVG 172 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168 G + + V D L ++ Sbjct: 173 GLVVLFLLGYVVPKFSTIYESASTDLPWMSQLLLS 207 >gi|91776770|ref|YP_546526.1| type II secretion system protein [Methylobacillus flagellatus KT] gi|91710757|gb|ABE50685.1| type II secretion system protein [Methylobacillus flagellatus KT] Length = 393 Score = 42.4 bits (98), Expect = 0.025, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 54/151 (35%), Gaps = 6/151 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 ++ ++AGL + +++ I + + + V++ + G + S +++ P Sbjct: 60 FSQELLSLLKAGLGLVESLEGIAEKEQRPEIAQVLKGVLDALYRGQTFSAALAAYPSAFP 119 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 T + S+ G+L EAL + + ++ K+ A S+ + G + Sbjct: 120 G-----LYTSMVKASERTGDLPEALLRYIGYEQQVEVLRKKLIASSIYPFLLITVGGLVV 174 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168 + V + + L + Sbjct: 175 LFLLGYVVPRFSQIYADAGENQAWMLRLVLG 205 >gi|304321272|ref|YP_003854915.1| general secretion pathway protein F [Parvularcula bermudensis HTCC2503] gi|303300174|gb|ADM09773.1| general secretion pathway protein F [Parvularcula bermudensis HTCC2503] Length = 404 Score = 42.4 bits (98), Expect = 0.026, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 54/179 (30%), Gaps = 21/179 (11%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 A + + A L V +A+ + GQS P+ V G LS+++ + Sbjct: 70 ATRQLATLIDASLTVEEALNAVAGQSKGKPIADILLSVRMRIIEGWRLSDALGEYPKAFS 129 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 I + GNL + L+ +L + M +K + + A + + Sbjct: 130 P-----LYRGIVAAGESAGNLGPVMLRLADMLEKNRAMASKAMSALIYPAAIMVVAVLVV 184 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML---------------IGIMVMRL 181 + V + D L + + + G+ +R Sbjct: 185 VALMNFVVPQVVEQFVGMGEDLPAVTKLVIGVSDLFREWGLLLLVLVLALGAGVWQIRR 243 >gi|269955643|ref|YP_003325432.1| type II secretion system protein [Xylanimonas cellulosilytica DSM 15894] gi|269304324|gb|ACZ29874.1| type II secretion system protein [Xylanimonas cellulosilytica DSM 15894] Length = 301 Score = 42.4 bits (98), Expect = 0.026, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 49/145 (33%), Gaps = 1/145 (0%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL- 63 K+ +F LD++ R+G V A+ + V V+ Sbjct: 150 AKQARGQFRRALALYLDLVAVERRSGAGVRPAMEAAADVADSWVFRRLGEVLRRTQWSGQ 209 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 +++ +M + L E+ F+ ++ + + G + L S LR + A + Sbjct: 210 PPWDALEQMADELGLPELKDFADIVGLSATQGAAAYDHLRARSAALRSAILSEDLTAANN 269 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTS 148 + + + ++ L+ Sbjct: 270 IGERMAIPSSLLGVIFMALLIAPAV 294 >gi|315930981|gb|EFV09956.1| bacterial type II secretion system protein F domain protein [Campylobacter jejuni subsp. jejuni 327] Length = 300 Score = 42.4 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 21/181 (11%), Positives = 56/181 (30%), Gaps = 10/181 (5%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 ++F + GL V +A+ + +++++ L +L+++ Sbjct: 50 QRLKDENFILFFKELALLCEVGLSVQEAIREL---YFMHSCKIMKKILDNLILAQNLNQA 106 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 ++ + ++ G +SE + +S++ + +++ Sbjct: 107 FENA-----NFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPTL 161 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMINFD 186 I + V L H++L + GI + L + F Sbjct: 162 VFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFI 221 Query: 187 V 187 V Sbjct: 222 V 222 >gi|238917897|ref|YP_002931414.1| hypothetical protein EUBELI_01984 [Eubacterium eligens ATCC 27750] gi|238873257|gb|ACR72967.1| Hypothetical protein EUBELI_01984 [Eubacterium eligens ATCC 27750] Length = 417 Score = 42.4 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 18/148 (12%), Positives = 49/148 (33%), Gaps = 11/148 (7%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR----------SEFRRVIETQHLGLS 64 D+ + + + AG+ A IV + + E G+S Sbjct: 268 DYSEIVSKLTLLLGAGMTTRMAWHKIVEDYNRKRQSGSIGVRPAYDEMYEADCNMQAGIS 327 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALS 123 + + R + +E ++++ + G + L L + +++ AK++ Sbjct: 328 EAAAYERFGKKCDTREYMKLASLLQTNIKKGTSQLRVLLEHEVNESFEKRKNIAKIKGEE 387 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGY 151 K ++ L ++ ++ + Sbjct: 388 ATTKLLFPMLLMLGVVMAIIMIPAVMKF 415 >gi|205356098|ref|ZP_03222865.1| hypothetical protein Cj8421_1512 [Campylobacter jejuni subsp. jejuni CG8421] gi|205345941|gb|EDZ32577.1| hypothetical protein Cj8421_1512 [Campylobacter jejuni subsp. jejuni CG8421] Length = 393 Score = 42.4 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 20/181 (11%), Positives = 55/181 (30%), Gaps = 10/181 (5%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 ++F + GL V +A+ + +++++ L +L+++ Sbjct: 50 QRLKDENFILFFKELALLCEVGLSVQEAIREL---YLMHSCKIMKKILDNLILAQNLNQA 106 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 ++ + ++ G +SE + +S++ + +++ Sbjct: 107 FENA-----NFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPTL 161 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM--LLGVAAAFMLIGIMVMRLMINFD 186 I + V L +L + GI + L + F+ Sbjct: 162 VFLSIIGAFLFLMLFVVPNFKDLFENLGTSLPFITHAMLEIYNFLDDYGIFCIFLFVIFN 221 Query: 187 V 187 V Sbjct: 222 V 222 >gi|163757223|ref|ZP_02164322.1| type II general secretion pathway (GSP) F protein [Kordia algicida OT-1] gi|161322801|gb|EDP94151.1| type II general secretion pathway (GSP) F protein [Kordia algicida OT-1] Length = 379 Score = 42.4 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 17/165 (10%), Positives = 47/165 (28%), Gaps = 9/165 (5%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + + AG+ + + + ++ Q + ++ G S+SE I + Sbjct: 44 DFYTELAVLLSAGVSLKEGLELLYNSQKKKTAKQILGEIVAELIEGKSMSEVIHLQKAFT 103 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + S + G L+ + L + ++ V + + Sbjct: 104 EYEYYS------IKIGEETGTLAMVVKQLGAFYARKNQQRSDVISALTYPIIVFTTAFLV 157 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML--IGIMVM 179 + V + G V + + G+ ++ Sbjct: 158 VLFMLNFVVPMFQDIFKQNKVELPGITRFIVGVSEFIKTYGLFLI 202 >gi|145596964|ref|YP_001161261.1| type II secretion system protein [Salinispora tropica CNB-440] gi|145306301|gb|ABP56883.1| type II secretion system protein [Salinispora tropica CNB-440] Length = 288 Score = 42.4 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 16/144 (11%), Positives = 40/144 (27%), Gaps = 2/144 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLG 62 + ++F LD++ + A ++ V + Q Sbjct: 140 KAEAARSEFRAAVCTYLDLVALQLSAAHGPVQSLERAAEVCDGWVFDRIRESLRLAQLQM 199 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S + + + + + E+ ++ G + E L + + LRD+ + Sbjct: 200 HSPWDELRELADQIGIPELGDVGAIMRSSGSEGAQVHETLRSRADSLRDQIRTDN-LARA 258 Query: 123 SMEAKASAWIIGSLPFCVSTLVYF 146 L F + + Sbjct: 259 EGVTGRLDIPGALLVFVLLGFATY 282 >gi|81428916|ref|YP_395916.1| putative type II secretion/competence system, protein comGB-like [Lactobacillus sakei subsp. sakei 23K] gi|78610558|emb|CAI55609.1| Putative Bacterial type II secretion/competence system, protein comGB-like [Lactobacillus sakei subsp. sakei 23K] Length = 335 Score = 42.4 bits (98), Expect = 0.028, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 58/173 (33%), Gaps = 15/173 (8%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + + L ++ R + G + A A + V + R+ + + L +S + Sbjct: 11 YADFLQLLGRLLENGFSLQQAFAFL-----PIVFPKQRQWLNQVNQALEKGDS---LAVS 62 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + ++L GNL + L +L RI R+ + +++ + +G Sbjct: 63 LAHADFPTDYVGQIELTELQGNLGQCLWHLGRIQSIRQKRRREIRGVLAYPLFLLAFLGG 122 Query: 136 LPFCVSTLVYFTSPGYM-------NVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L + + + L LL + M G+ ++ Sbjct: 123 LIGLLRHYLLPEIAQITPESNQTGSPLSRIILWGFLLVLVLLIMGSGLFMVYR 175 >gi|319789873|ref|YP_004151506.1| Type II secretion system F domain protein [Thermovibrio ammonificans HB-1] gi|317114375|gb|ADU96865.1| Type II secretion system F domain protein [Thermovibrio ammonificans HB-1] Length = 403 Score = 42.4 bits (98), Expect = 0.028, Method: Composition-based stats. Identities = 21/167 (12%), Positives = 50/167 (29%), Gaps = 10/167 (5%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAV-IVGQSSDPVRSEFRRVIETQHLGLSLS 66 R + + + AG+P+ +AV + + ++ + V G + + Sbjct: 60 RRGPSNQELATFFKTLATLIDAGIPIVEAVESFVEKDTPPHLQLFYSAVAGALKEGATFT 119 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ R + + + G L E L + +L +++K KV + Sbjct: 120 EALKRAGLR------NETLLSLIYSGEKGALLPENLKLAALLLEKIESLKTKVAQALIYP 173 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + V ++ P + + L Sbjct: 174 A---ILFVVALGVVVFMMTAVIPKIVGIYTTAHLELPLSTRLVILFS 217 Score = 41.3 bits (95), Expect = 0.057, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 48/134 (35%), Gaps = 7/134 (5%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVR 74 L + + AG+PV +A+ + V + + V+E G SLS+ +S + Sbjct: 268 LQRFLYTLGNLLNAGVPVVEALEIAVTTIPNLAVRLRVKPVVEHVKKGESLSKVLSEL-- 325 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + +L GNL E + L ++K K +E + Sbjct: 326 ----IPLPLVVYQLLKAGELSGNLGEMALKGAGYLETEIDVKVKSLTSLIEPVTMLIVGL 381 Query: 135 SLPFCVSTLVYFTS 148 + F V L+ Sbjct: 382 MIGFIVYALLLPIV 395 >gi|290476438|ref|YP_003469343.1| type IV pilin biogenesis transmembrane protein [Xenorhabdus bovienii SS-2004] gi|289175776|emb|CBJ82579.1| component in type IV pilin biogenesis, transmembrane protein [Xenorhabdus bovienii SS-2004] Length = 399 Score = 42.4 bits (98), Expect = 0.028, Method: Composition-based stats. Identities = 18/157 (11%), Positives = 50/157 (31%), Gaps = 6/157 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 + + + +G+P+ + +++ + + +I+ G S S ++ R Sbjct: 64 FIHQLSTLLASGIPLLKGLTLLLQECKQMLWRCVLTDIIQKISQGESFSTTLGHYPRL-- 121 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 S + + G L + L + ++ K+Q A++ + Sbjct: 122 ---FSPLFRQLIAVGEETGQLETCCQLIINRLEQQDILRKKIQKAYRYPLIVAFVTILVI 178 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + V + ++A+ +LI Sbjct: 179 LLMLIFVLPEFKQVYSSFNASLPLLTQWILSASDLLI 215 >gi|311110460|ref|ZP_07711857.1| competence protein [Lactobacillus gasseri MV-22] gi|311065614|gb|EFQ45954.1| competence protein [Lactobacillus gasseri MV-22] Length = 333 Score = 42.4 bits (98), Expect = 0.028, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 58/167 (34%), Gaps = 14/167 (8%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 +D + +++ G ++ ++ ++ S + + ++ + Sbjct: 21 FIDYLRQALINGYSLNASLKLLPKIWSGDSNQLVYISKQVEEG--------RQLGDVLHE 72 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 S + + GNL L LS+++R + K++ ++ +L Sbjct: 73 VGFSSTLAAQINMAIIDGNLLSCLDQLSKLIRLKNKQLKKLRGELAYPALLIGMMVTLLI 132 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 C+ T + ND +++LG ++IG + +I Sbjct: 133 CMQTFLKTEMSD------NDWTSNVMLGGLVMLVIIGAFFISKVIRL 173 >gi|300854277|ref|YP_003779261.1| putative general secretion pathway protein F [Clostridium ljungdahlii DSM 13528] gi|300434392|gb|ADK14159.1| predicted general secretion pathway protein F [Clostridium ljungdahlii DSM 13528] Length = 340 Score = 42.4 bits (98), Expect = 0.029, Method: Composition-based stats. Identities = 21/155 (13%), Positives = 48/155 (30%), Gaps = 7/155 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D + + AG+ +S + + Q + + I+ + S Sbjct: 2 DISVLCSQLSVMLGAGINISRVLDNLETQCNKSSLRLALKSIKEDVIKGQSIHS----SM 57 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 F + + G L E L LS + N+ + ++A + + Sbjct: 58 AKFKNIFPNFMIEMIRVGETSGKLDEVLIKLSEYYEKKNNIISTIKASLIYPVVT---FI 114 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 + F V L+ P + +++ ++ L Sbjct: 115 TSIFIVMFLMIKIIPQFTDIIQSNGGEIPTLTRVV 149 >gi|257793130|ref|YP_003186528.1| hypothetical protein Aaci_3143 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479822|gb|ACV60139.1| hypothetical protein Aaci_3143 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 268 Score = 42.4 bits (98), Expect = 0.029, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 52/146 (35%), Gaps = 5/146 (3%) Query: 7 KRTAKFLDDFPNALD----IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 ++ +F DD L ++ G+ D + +++ + +R R + Sbjct: 108 QKRKRFEDDLRFGLRRVKMLMASLYERGITPEDMLPLLISATDGALRQLLERAYQRMQTT 167 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAKVQA 121 +L+++++ M + L E+ ++V + +L L ++ R + + +A Sbjct: 168 DTLADALTWMAQETGLAEMRQLASVWIQAGRYEGTSLETQLKQMAVDERAQFLFNLEKRA 227 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFT 147 +I + LV Sbjct: 228 ERKRMSVLFEVIAFIALPTIFLVGIL 253 >gi|116629903|ref|YP_815075.1| Type II secretory pathway/competence component [Lactobacillus gasseri ATCC 33323] gi|116095485|gb|ABJ60637.1| Type II secretory pathway/competence component [Lactobacillus gasseri ATCC 33323] Length = 339 Score = 42.4 bits (98), Expect = 0.029, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 58/167 (34%), Gaps = 14/167 (8%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 +D + +++ G ++ ++ ++ S + + ++ + Sbjct: 27 FIDYLRQALINGYSLNASLKLLPKIWSGDSNQLVYISKQVEEG--------RQLGDVLHE 78 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 S + + GNL L LS+++R + K++ ++ +L Sbjct: 79 VGFSSTLAAQINMAIIDGNLLSCLDQLSKLIRLKNKQLKKLRGELAYPALLIGMMVTLLI 138 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 C+ T + ND +++LG ++IG + +I Sbjct: 139 CMQTFLKTEMSD------NDWTSNVMLGGLVMLVIIGAFFISKVIRL 179 >gi|9587175|gb|AAF89190.1|AF268318_3 PilC [Aggregatibacter actinomycetemcomitans] Length = 407 Score = 42.4 bits (98), Expect = 0.029, Method: Composition-based stats. Identities = 22/171 (12%), Positives = 64/171 (37%), Gaps = 6/171 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV-IETQHLGLSLSESISR 71 D L + ++A +P+ +++ +++ ++ + + R ++ GL+ S+++ + Sbjct: 57 NADICTLLSQLATLLQAAVPLKNSLQILLQNCTNIALNRWLRCLLQEIESGLAFSQALEQ 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 Y+ QE + ++ G L+ +++ + ++ K+Q + + Sbjct: 117 QGLYLTYQER-----QLIQVGEMTGKLAAVCHEIAQHKQQALALQRKIQKILLYPLLVLG 171 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 I L + + + + +A + L G LM Sbjct: 172 ISLILTALLLLFIVPQFAAMYDNSNAQLPVFTQVLLALSQGLQGYWFALLM 222 Score = 34.7 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 14/145 (9%), Positives = 45/145 (31%), Gaps = 5/145 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR----VIETQHLGL 63 R + + ++AG+P++ A+ + + ++ +I L Sbjct: 257 RIVQLSR-LVGFSHSLFLMLQAGIPLNQALQSFLPKQQSWQTKPQQQGDWLLIAGVQSAL 315 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + + Q + + + G L + L ++ + + + + + + Sbjct: 316 HWIQQGYPFSASVSGQIFQPAAQQMLQVGEQSGQLPKMLQFIANDHQQQLDHQIDLLSQM 375 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTS 148 +E I G + + + Sbjct: 376 LEPLLMVIIGGLIGLIMLGMYLPIF 400 >gi|320533995|ref|ZP_08034553.1| type II secretion system F domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133783|gb|EFW26173.1| type II secretion system F domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 307 Score = 42.4 bits (98), Expect = 0.030, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 60/150 (40%), Gaps = 4/150 (2%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS-LSE 67 F + LD++ S+ AG V +A+ S DP R ++ L Sbjct: 160 RRDFRHVVGSYLDLVAMSLSAGRGVPEALDAASSLSDDPAMLRIRDALDVARLRGDTPWA 219 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ R+ + + E+ S +++ ++ G + E+L + +R R A+ + Sbjct: 220 ALGRLGTQLRIDELRDLSAALALVAEDGAKIRESLGARASSMRRRDLSDAEGK---AGEN 276 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + + ++ L + +V+ P ++ + Sbjct: 277 SESMLVAQLVVAMGFIVFLVYPALTGIIGS 306 >gi|331092045|ref|ZP_08340876.1| hypothetical protein HMPREF9477_01519 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402246|gb|EGG81817.1| hypothetical protein HMPREF9477_01519 [Lachnospiraceae bacterium 2_1_46FAA] Length = 403 Score = 42.4 bits (98), Expect = 0.031, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 45/129 (34%), Gaps = 8/129 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-------RVIETQHLGLSLSE 67 D+P + + + +G+ + +A I+ + + E R + G++ SE Sbjct: 257 DYPEIISQLSLLIGSGMTIKNAWKKILFHYENRKKKEVRFAYEEIYCAMREMQGGMTESE 316 Query: 68 SISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 S R + + T +S + L+E L ++ + + +AK Sbjct: 317 SYERFGKRCGISSYMKLGTTLSQNVRKGAKGLTELLEKETKEALETRKQRAKQYGEKAGT 376 Query: 127 KASAWIIGS 135 K + Sbjct: 377 KLLLPMSMM 385 >gi|256811145|ref|YP_003128514.1| Type II secretion system F domain protein [Methanocaldococcus fervens AG86] gi|256794345|gb|ACV25014.1| Type II secretion system F domain protein [Methanocaldococcus fervens AG86] Length = 558 Score = 42.4 bits (98), Expect = 0.031, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 54/157 (34%), Gaps = 2/157 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRA-GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +++ + FP+ L + SV A G + +++ + P+ + +R+ + L Sbjct: 319 REEEKVKRKESVFPDFLRSLGDSVSAKGGGMVESLEYLSNHDFGPLTKDIKRLYKRLALN 378 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + ++S + FS + S GG A +S R ++ K + Sbjct: 379 IDQNKSWRFFGLESCSYLIQLFSDMFSRCIYFGGEPKMAAEIISNNFRKIVQLR-KSKYQ 437 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159 S++ A ++ ++ L Sbjct: 438 SVQQFAGVIYGLGGGLALALFASLGVAKMVSDLYTSL 474 >gi|320531924|ref|ZP_08032831.1| hypothetical protein HMPREF9057_00698 [Actinomyces sp. oral taxon 171 str. F0337] gi|320135860|gb|EFW27901.1| hypothetical protein HMPREF9057_00698 [Actinomyces sp. oral taxon 171 str. F0337] Length = 215 Score = 42.4 bits (98), Expect = 0.032, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 24/63 (38%) Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + +A ++ LP L ++L++ G + + M +G +V R Sbjct: 2 ALAGPRTTARLLACLPVVGLGLGMLVGADPASLLLDGGVGSAVGALGIVLMAVGHLVTRR 61 Query: 182 MIN 184 +I Sbjct: 62 LIR 64 >gi|227497417|ref|ZP_03927649.1| hypothetical protein HMPREF0058_1641 [Actinomyces urogenitalis DSM 15434] gi|226833093|gb|EEH65476.1| hypothetical protein HMPREF0058_1641 [Actinomyces urogenitalis DSM 15434] Length = 231 Score = 42.4 bits (98), Expect = 0.033, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 44/148 (29%), Gaps = 1/148 (0%) Query: 8 RTAKFLDDFPNALDIIVRSVRAG-LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 R + P ALD++ +V G PV A ++V + E ++ L Sbjct: 78 RRRQIEASLPEALDVLALAVDTGWQPVQGAERLMVSTFNAAFAHELAGILPPDGAPLIPE 137 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +V + G LS L + LR+R+ + + A Sbjct: 138 LVSRLGAEPGASAQVLRLQRAFVSAPEGGEVLSGLLRAQAADLRERRRQQLARRVGCRLA 197 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154 +A ++ + + Sbjct: 198 FQAALVLLIQVPVMVVAFAVLVRALLEP 225 >gi|296132332|ref|YP_003639579.1| hypothetical protein TherJR_0811 [Thermincola sp. JR] gi|296030910|gb|ADG81678.1| hypothetical protein TherJR_0811 [Thermincola potens JR] Length = 303 Score = 42.0 bits (97), Expect = 0.034, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 45/120 (37%), Gaps = 2/120 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K K + + D P +D + S+ +G A+ + S + R+I Sbjct: 146 VKKRFKAWQNEVVKDIPELIDKMRISLASGKDYLSALKKVQENSGPRLSKIVERLINDMQ 205 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAKV 119 + ++++ + L + F + V ++G AN+ +RD + + + Sbjct: 206 IMRP-TQALDEFAQAFGLPVMVKFVAALKVGMEVGYEQAESYFANIEDDIRDLRKLSLEE 264 >gi|296111128|ref|YP_003621509.1| ComGB [Leuconostoc kimchii IMSNU 11154] gi|295832659|gb|ADG40540.1| ComGB [Leuconostoc kimchii IMSNU 11154] Length = 348 Score = 42.0 bits (97), Expect = 0.034, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 67/183 (36%), Gaps = 14/183 (7%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K L + + K + + +++G +S ++ ++ S + Sbjct: 11 KQLTRSKRFKIREQI-LFFQELGELLQSGYSISQSLDILASAHSKWYQWLT-----EVRY 64 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GL+ ++ +++ VS + + GNLSE L + + L + + KV Sbjct: 65 GLNQGLALHLILQKN----VSSQILLQLKLADQHGNLSETLVAIGQNLAKLQQQQNKVMQ 120 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND----PRGHMLLGVAAAFMLIGIM 177 + I+G++ + L+Y + + + P G A +L G++ Sbjct: 121 VMRYPLILLSILGAMLVGLKYLLYPILNQWQDKAASSDIPNPAYTYFFGGVACLLLFGLI 180 Query: 178 VMR 180 ++ Sbjct: 181 IIW 183 >gi|158313207|ref|YP_001505715.1| hypothetical protein Franean1_1361 [Frankia sp. EAN1pec] gi|158108612|gb|ABW10809.1| hypothetical protein Franean1_1361 [Frankia sp. EAN1pec] Length = 287 Score = 42.0 bits (97), Expect = 0.034, Method: Composition-based stats. Identities = 19/176 (10%), Positives = 54/176 (30%), Gaps = 1/176 (0%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 + D + + + AG + A+ + RR++ + Sbjct: 92 ITRLGDAVGTWAEQVREGLDAGQHLRAAIVASTDHPPAELAGPLRRLVARLDVLSLPDAL 151 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + + + G+L +A+ R + AL + Sbjct: 152 WAMRAEVPHPALGPMIAALDVAYRRGAGDLPRLMASQVEATRQSVALLRDQHALRARHRR 211 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + ++ L ++++ T P ++ G ++L V +++ + + M Sbjct: 212 AMTLLLVLFTGSTSVLLVTWPAFLAP-YRTMSGQLVLAVIGGGVVLAVRALAAMSR 266 >gi|167466635|ref|ZP_02331339.1| putative general secretion pathway protein F. [Yersinia pestis FV-1] Length = 323 Score = 42.0 bits (97), Expect = 0.034, Method: Composition-based stats. Identities = 17/147 (11%), Positives = 47/147 (31%), Gaps = 9/147 (6%) Query: 31 LPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS 89 +P+ + + ++ Q S + +R+ G S ++++S S + Sbjct: 1 MPLDEVLDIVGKQNSKSKMIEIIQRIRVNIQEGHSFADALSPFPA-----VFSPLYKTMV 55 Query: 90 VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 ++ G+L L L+ + + ++ K+ + ++ + L+ P Sbjct: 56 TAGEVSGHLGLVLVRLADHIEQTQKIQRKIIQALIYP---CVLVLISLSVIIILLTAVVP 112 Query: 150 GYMNVLINDPRGHMLLGVAAAFMLIGI 176 + L + I Sbjct: 113 NIVEQFSFSETALPLSTKVLMILSYSI 139 >gi|145596548|ref|YP_001160845.1| type II secretion system protein [Salinispora tropica CNB-440] gi|145305885|gb|ABP56467.1| type II secretion system protein [Salinispora tropica CNB-440] Length = 253 Score = 42.0 bits (97), Expect = 0.035, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 44/131 (33%), Gaps = 4/131 (3%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 +RAG PV +V + P+ RV LG +E+ S + Sbjct: 126 MRAGAPVDRSVLAVAEALDGPLAERLARVGRLLRLGAEPAEAWSTLAAV---PGAERLVG 182 Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IGSLPFCVSTLVY 145 + G +L+ AL L+ LR + A+ A + + LP + + Sbjct: 183 AALRSATSGASLAGALTRLADDLRADRTTAAEATAQRSGVLIVLPLGLCFLPAFILAGLV 242 Query: 146 FTSPGYMNVLI 156 + ++ Sbjct: 243 PVIVAVLGDVL 253 >gi|225568583|ref|ZP_03777608.1| hypothetical protein CLOHYLEM_04660 [Clostridium hylemonae DSM 15053] gi|225162599|gb|EEG75218.1| hypothetical protein CLOHYLEM_04660 [Clostridium hylemonae DSM 15053] Length = 384 Score = 42.0 bits (97), Expect = 0.035, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 50/167 (29%), Gaps = 6/167 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 L+ + AG + +AV+ ++E + ++ + S Sbjct: 129 VDQQISTFLNSVKVLTSAGYSIDEAVSDAAEAG----KTESDVKLIDKNGNGGFAMPHSF 184 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + +YMP ++ I L + R+ V + Sbjct: 185 LFQYMPYIILAVLCYTIGYIMMAFRKKDVRQRMLCSSISGRRQNMQMVAGFVVIGAGFWG 244 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 I LP + + P + +IN +L + IG++V Sbjct: 245 ICMLLPLVMYPGQFLNDPNNIYYMINS--FLCVLVGLSIAFTIGVVV 289 >gi|222479408|ref|YP_002565645.1| type II secretion system protein [Halorubrum lacusprofundi ATCC 49239] gi|222452310|gb|ACM56575.1| type II secretion system protein [Halorubrum lacusprofundi ATCC 49239] Length = 680 Score = 42.0 bits (97), Expect = 0.036, Method: Composition-based stats. Identities = 20/178 (11%), Positives = 52/178 (29%), Gaps = 7/178 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQHL 61 R + +++ + GL + + + + V EF+ ++ Sbjct: 142 RASAREREINLLLADSVSFMYALSVGGLNQLEILRAMATAEDTYGEVSQEFQSIVNETEY 201 Query: 62 GL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +I + P E+S F + GGN+ L + + ++ Sbjct: 202 FGTDYRNAIRQQSMETPSDELSQFLADMLSIVNSGGNMESFLKDKKEKHLRTSKQEREMT 261 Query: 121 ALSMEAKASAWII----GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 ++E ++ L + ++ +L + L +L+ Sbjct: 262 LETLELFGEMYMTLSLFPLLLIIILVIMGMMGESDDFLLYATVYALIPLTGVGFLVLV 319 >gi|290969006|ref|ZP_06560541.1| type II secretion system F domain protein [Megasphaera genomosp. type_1 str. 28L] gi|290780962|gb|EFD93555.1| type II secretion system F domain protein [Megasphaera genomosp. type_1 str. 28L] Length = 399 Score = 42.0 bits (97), Expect = 0.037, Method: Composition-based stats. Identities = 12/141 (8%), Positives = 31/141 (21%), Gaps = 5/141 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + + +G+P+ A ++ + + L + IS Sbjct: 61 QLIFWFQQMAVLLSSGIPLVQAWTLLCRDWRKAGEKQCLQ-----RGVFRLEQGISVTEV 115 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + G L+E L + K V + Sbjct: 116 LEESELFPVMVIPMVRAGEQSGQLAEIFQLLGTYYTYVEKQKQGVLQALLYPAFLCCCAL 175 Query: 135 SLPFCVSTLVYFTSPGYMNVL 155 + + + Sbjct: 176 GAAIFAIFFLLPVFENLFSQM 196 >gi|123443546|ref|YP_001007519.1| general secretion pathway protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090507|emb|CAL13376.1| general secretion pathway protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 402 Score = 42.0 bits (97), Expect = 0.038, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISR 71 D + V A +P+ +A+A+I Q + V S ++ + G SLS+S+S+ Sbjct: 62 NRDLILITRQMSILVNAAIPLDEALALIENQSTKSKVDSVIHKIRKRVLEGHSLSDSLSQ 121 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + +L G+L L+NL+ + + +K+K+ + Sbjct: 122 FPAI-----FNSLYRSMIAAGELSGHLGLVLSNLADHIEQARKVKSKIIQTLIYPAILVS 176 Query: 132 II 133 + Sbjct: 177 VS 178 >gi|331003047|ref|ZP_08326559.1| hypothetical protein HMPREF0491_01421 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413091|gb|EGG92466.1| hypothetical protein HMPREF0491_01421 [Lachnospiraceae oral taxon 107 str. F0167] Length = 409 Score = 42.0 bits (97), Expect = 0.040, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 53/161 (32%), Gaps = 19/161 (11%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR---------SEF 52 K ++K + + D+P+ + ++ + AGL V + IV + R E Sbjct: 249 KFNLEKIKRELMKDYPDIVSKLIVFIGAGLSVRQSWESIVKDYENEYRENNEKRYAYEEM 308 Query: 53 RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL---------- 102 + E G + R L++ ++++ + G + L Sbjct: 309 AKAYERLKNGTHENIVYKDFGRSCSLRQYMKLASLLEQNRRSGISNLHTLLSMESQSAWD 368 Query: 103 ANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143 L+ R+ + + K+ ++ +P + Sbjct: 369 ERLNLARREGEELNTKLLLPLFIMLLIVMMMIIVPALLIFY 409 >gi|74317451|ref|YP_315191.1| type II secretion system protein F [Thiobacillus denitrificans ATCC 25259] gi|74056946|gb|AAZ97386.1| type II secretion system protein F [Thiobacillus denitrificans ATCC 25259] Length = 392 Score = 42.0 bits (97), Expect = 0.040, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 46/145 (31%), Gaps = 7/145 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 ++ + AGL +S+A+ + + R R++ + G S +++ + P Sbjct: 60 FTQELIALLDAGLTLSEALETLAEKEHRAESRQLIERLLASMREGRPFSAALAAQDAFPP 119 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ G+LS ALA +K KV + ++ + + Sbjct: 120 ------LYAATVRAAESTGDLSPALARYVSYQSQIDTVKKKVVSAAIYPMLLIAVGTLVV 173 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGH 162 + V D Sbjct: 174 AFLLGYVVPRFATVYADTGRDLPWM 198 >gi|291333379|gb|ADD93084.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S05-C205] Length = 339 Score = 42.0 bits (97), Expect = 0.040, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 52/185 (28%), Gaps = 8/185 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQ 59 K ++R + P A A S + V + V Sbjct: 146 KREAERRGSMIEKYLPYAASYTAAMSAANATPSKIFRSLAMNKDIYGDVADDAAMVYRDV 205 Query: 60 HLGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L L ++ V ++ F + GG L N + + + Sbjct: 206 TLLGYDLITAMKMSVDRAASVWLTEFFQGMVGTLTAGGQLKLYFLNRAEHYMRENRTRLQ 265 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + S+ A ++I+ ++ + +V + G + +++G + Sbjct: 266 MFLESIALLAESYIVVAVAMPLFLIVMLVI-----MFWVSGSGAQMSEGMLYGIVLGFVP 320 Query: 179 MRLMI 183 M + Sbjct: 321 MIHIA 325 >gi|283955074|ref|ZP_06372577.1| general secretory pathway protein F [Campylobacter jejuni subsp. jejuni 414] gi|283793441|gb|EFC32207.1| general secretory pathway protein F [Campylobacter jejuni subsp. jejuni 414] Length = 392 Score = 42.0 bits (97), Expect = 0.040, Method: Composition-based stats. Identities = 19/177 (10%), Positives = 53/177 (29%), Gaps = 10/177 (5%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 ++F + GL V +A+ + +++++ L SL+++ Sbjct: 50 QRLKDENFILFFKELALLCEVGLSVQEAIKEL---YLMHSCKIMKKILDNLILAQSLNQA 106 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 ++ + ++ G +SE + +S++ + +++ Sbjct: 107 FENA-----NFGLNRAELALIKTAENTGKISEIFSQISKLREKSMENQKQLKKALRYPTL 161 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM--LLGVAAAFMLIGIMVMRLMI 183 I + V L + +L + GI L++ Sbjct: 162 VFLGIIGAFLFLMLFVVPNFKDLFENLDANLPFITHAMLEIYNFLDTYGIFCTSLLV 218 >gi|116671912|ref|YP_832845.1| type II secretion system protein [Arthrobacter sp. FB24] gi|116612021|gb|ABK04745.1| type II secretion system protein [Arthrobacter sp. FB24] Length = 204 Score = 42.0 bits (97), Expect = 0.042, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 46/139 (33%), Gaps = 2/139 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + L D L++I + AG + A+ ++ +S R R V+ +G Sbjct: 57 RAGEGLRDTAMMLELIGAMLDAGSGIGRALELVADSASPEYRHSLRPVVSALAIGADWET 116 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + + E+ + + G S L + LR + A+ +A ++ + Sbjct: 117 AWR--SSEVRTPELLVLRQALGFAALTGAPSSAILYAQAARLRRERFRAAEKRAAALGVR 174 Query: 128 ASAWIIGSLPFCVSTLVYF 146 + L Sbjct: 175 LVVPLGLCSLPAFVCLGVV 193 >gi|319934885|ref|ZP_08009330.1| hypothetical protein HMPREF9488_00161 [Coprobacillus sp. 29_1] gi|319810262|gb|EFW06624.1| hypothetical protein HMPREF9488_00161 [Coprobacillus sp. 29_1] Length = 342 Score = 42.0 bits (97), Expect = 0.042, Method: Composition-based stats. Identities = 17/172 (9%), Positives = 54/172 (31%), Gaps = 12/172 (6%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + ++AGL V + ++ + + LG ++ + Sbjct: 10 QFSNQMAMILKAGLSVQQGIEMMQQDLENQNLK----IALEAILGYMKEDAHLSLA-IER 64 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + ++ G++ + + +L +M +++Q ++ + Sbjct: 65 TGMFDDYMVHLLKVGEVSGHIDDVMESLGEYYLRMDDMTSQLQQALTYPIILFIMMFVVV 124 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHML-------LGVAAAFMLIGIMVMRLM 182 V V + L + + FM++GI ++ ++ Sbjct: 125 GVVVFQVLPIFENVLMSLGSHLSSFASRFMNFGQIFSMLGFMILGIFMIMII 176 >gi|226363662|ref|YP_002781444.1| hypothetical protein ROP_42520 [Rhodococcus opacus B4] gi|226242151|dbj|BAH52499.1| hypothetical membrane protein [Rhodococcus opacus B4] Length = 194 Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 53/143 (37%), Gaps = 4/143 (2%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 A D++ +RAGLPV+ A + + P+ RR + LG + + Sbjct: 54 AFDLLAACLRAGLPVATAAQAVARSAPAPLSESLRRAADLLALGADAATAWEAAASDPAT 113 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IGSLP 137 + ++ + + G +L+ ++ L+ R + A A S + + LP Sbjct: 114 ESLARMA---RRSAASGSSLAGSMTELAADARTQVEHLASASAERAGVLISGPLGLCFLP 170 Query: 138 FCVSTLVYFTSPGYMNVLINDPR 160 + + G + +++ Sbjct: 171 AFICLGIIPVVVGLASRVLDGGL 193 >gi|163785985|ref|ZP_02180433.1| type II general secretion pathway (GSP) F protein [Flavobacteriales bacterium ALC-1] gi|159877845|gb|EDP71901.1| type II general secretion pathway (GSP) F protein [Flavobacteriales bacterium ALC-1] Length = 377 Score = 41.6 bits (96), Expect = 0.043, Method: Composition-based stats. Identities = 24/182 (13%), Positives = 59/182 (32%), Gaps = 24/182 (13%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AG+ + A+ +I + + + V+ + G SLSESI + Sbjct: 43 DFYTELSVLLKAGINLKQALELIKNSQKNKKTVAVLQTVLNSIVDGQSLSESIKEQKDFS 102 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + S + G ++ L + + + I+ + Sbjct: 103 DYEYYS------LKIGEETGTSAKIAEQLGEFYSRKNEQRKHLINALTYP---CIILSTA 153 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA--------------FMLIGIMVMRLM 182 V ++ F P + ++ + V ++G++V R + Sbjct: 154 VLVVIFMLQFVVPMFEDIFKQQNVELPAITVFVVNTSAFIKEYGWLILVFVLGLIVSRAV 213 Query: 183 IN 184 +N Sbjct: 214 LN 215 >gi|86149269|ref|ZP_01067500.1| general secretory pathway protein F [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596137|ref|ZP_01099374.1| general secretory pathway protein F [Campylobacter jejuni subsp. jejuni 84-25] gi|157415694|ref|YP_001482950.1| general secretory pathway protein F [Campylobacter jejuni subsp. jejuni 81116] gi|32765533|gb|AAP87276.1| CtsF [Campylobacter jejuni] gi|85840051|gb|EAQ57309.1| general secretory pathway protein F [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190978|gb|EAQ94950.1| general secretory pathway protein F [Campylobacter jejuni subsp. jejuni 84-25] gi|157386658|gb|ABV52973.1| general secretory pathway protein F [Campylobacter jejuni subsp. jejuni 81116] gi|284926677|gb|ADC29029.1| general secretory pathway protein F [Campylobacter jejuni subsp. jejuni IA3902] gi|315927417|gb|EFV06755.1| bacterial type II secretion system protein F domain protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929007|gb|EFV08250.1| bacterial type II secretion system protein F domain protein [Campylobacter jejuni subsp. jejuni 305] Length = 393 Score = 41.6 bits (96), Expect = 0.043, Method: Composition-based stats. Identities = 21/181 (11%), Positives = 56/181 (30%), Gaps = 10/181 (5%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 ++F + GL V +A+ + +++++ L +L+++ Sbjct: 50 QRLKDENFILFFKELALLCEVGLSVQEAIREL---YFMHSCKIMKKILDNLILAQNLNQA 106 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 ++ + ++ G +SE + +S++ + +++ Sbjct: 107 FENA-----NFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPTL 161 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMINFD 186 I + V L H++L + GI + L + F Sbjct: 162 VFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFI 221 Query: 187 V 187 V Sbjct: 222 V 222 >gi|325964625|ref|YP_004242531.1| type II secretion system protein F [Arthrobacter phenanthrenivorans Sphe3] gi|323470712|gb|ADX74397.1| type II secretion system protein F [Arthrobacter phenanthrenivorans Sphe3] Length = 204 Score = 41.6 bits (96), Expect = 0.046, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 2/128 (1%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L+++ + AG + A+ ++ G +SD R V+ +G + + L Sbjct: 69 MLELVAAMLDAGSSIGRALELVSGSASDRYCRALRPVVSALAIGADWETAWRSSA--VRL 126 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 EV + + G S L + LR + A+ +A S+ K + Sbjct: 127 PEVLELRDALGFAALTGAPSSAILYAQAARLRRERFRAAEKRAASLGVKLVVPLGLCSLP 186 Query: 139 CVSTLVYF 146 L Sbjct: 187 AFICLGVV 194 >gi|317472141|ref|ZP_07931473.1| type II secretion system protein [Anaerostipes sp. 3_2_56FAA] gi|316900545|gb|EFV22527.1| type II secretion system protein [Anaerostipes sp. 3_2_56FAA] Length = 374 Score = 41.6 bits (96), Expect = 0.047, Method: Composition-based stats. Identities = 17/144 (11%), Positives = 49/144 (34%), Gaps = 2/144 (1%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 ++++P + V + AG+ + AV I R + ++L S ++ Sbjct: 230 MEEYPIIISRFVLLLGAGMTIQGAVHSIGSSFDRDHPKFVYRQFQQADKKIALGMSQAQA 289 Query: 73 VRYMPLQEVSFFS--TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 +R + + + L + L+ L + + + + E ++ Sbjct: 290 LRELGSSIQLPCYKKLSVLLSQSLLRGTRDLLSRLEEEETEAFSERKETARRKGEEASTK 349 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNV 154 ++ + + L P +++ Sbjct: 350 LLMPMILMLIVILTLLMVPAFLSF 373 >gi|292654784|ref|YP_003534681.1| type IV pilus biogenesis complex membrane subunit [Haloferax volcanii DS2] gi|291372968|gb|ADE05195.1| type IV pilus biogenesis complex membrane subunit [Haloferax volcanii DS2] Length = 639 Score = 41.6 bits (96), Expect = 0.047, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 63/187 (33%), Gaps = 12/187 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ 59 + L R P A+ + + + + FR V+ T Sbjct: 140 LGWLATARRENIERTLPGAVRYLHVLSSGSDGPRGMLRRVAETDAYGETAIAFRSVLNTA 199 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTV-ISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L +++E + R+ R P + + + + G + + + + +A+ Sbjct: 200 SLTGNVNEGLRRVARDTPSEGMLAPFLLKFREHAGQGSDALRNYLRMESRMLGHRQDRAR 259 Query: 119 VQAL-----SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM----LLGVAA 169 +A E ++ SL V T++ +PG + P G ++ ++ Sbjct: 260 ERAEGFLELLAELFIVLLVLPSLLVIVLTVMSVIAPGLSAPV-ATPLGQTTTRGVVVYSS 318 Query: 170 AFMLIGI 176 A ++G+ Sbjct: 319 AAFIVGV 325 >gi|171915860|ref|ZP_02931330.1| type II secretion system protein [Verrucomicrobium spinosum DSM 4136] Length = 332 Score = 41.6 bits (96), Expect = 0.047, Method: Composition-based stats. Identities = 20/161 (12%), Positives = 49/161 (30%), Gaps = 6/161 (3%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + + AG+ + +V +++ Q + I+ S + V V+ Sbjct: 13 FAKLLGAGMHLDRSVDLLLEQGPPASMRSYLNGIKQGLAE---RLSFTESVARHNAGIVT 69 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + + GG L + +L+ R+ + K + + P Sbjct: 70 PLEISLLDAGEKGGRLEASCEHLAHYFELRQKSRDKAIGALIYPVLLLHVGALFPDFTR- 128 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + G + L+ +++ A A + + M Sbjct: 129 --MWNGGGLQDYLLQTGGRLLMIWAALAVLGACWWFVLKMA 167 >gi|167748319|ref|ZP_02420446.1| hypothetical protein ANACAC_03063 [Anaerostipes caccae DSM 14662] gi|167652311|gb|EDR96440.1| hypothetical protein ANACAC_03063 [Anaerostipes caccae DSM 14662] Length = 445 Score = 41.6 bits (96), Expect = 0.047, Method: Composition-based stats. Identities = 17/144 (11%), Positives = 49/144 (34%), Gaps = 2/144 (1%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 ++++P + V + AG+ + AV I R + ++L S ++ Sbjct: 301 MEEYPMIISRFVLLLGAGMTIQGAVHSIGSSFDRDHPKFVYRQFQQADKKIALGMSQAQA 360 Query: 73 VRYMPLQEVSFFS--TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 +R + + + L + L+ L + + + + E ++ Sbjct: 361 LRELGSSIQLPCYKKLSVLLSQSLLRGTRDLLSRLEEEETEAFSERKETARRKGEEASTK 420 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNV 154 ++ + + L P +++ Sbjct: 421 LLMPMILMLIVILTLLMVPAFLSF 444 >gi|269118870|ref|YP_003307047.1| type II secretion system protein [Sebaldella termitidis ATCC 33386] gi|268612748|gb|ACZ07116.1| type II secretion system protein [Sebaldella termitidis ATCC 33386] Length = 388 Score = 41.6 bits (96), Expect = 0.049, Method: Composition-based stats. Identities = 20/171 (11%), Positives = 54/171 (31%), Gaps = 7/171 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 +F + + V+A + ++DA++++ S ++ +S ++ + Sbjct: 55 EFTTFITSLYFLVKADIRIADALSILAENFSGALKD-------NISNAVSALKAGKTLRE 107 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 ++ GN+ L NL + +K ++ LSM Sbjct: 108 GFAFITDDKIFLNTMEIAEESGNILLPLENLKNKYEFEQELKKEIINLSMYPALVLGTSI 167 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + V G N L + + + + + ++ + Sbjct: 168 IIISILFKFVVPKFSGIYNDLNKEIPLLTKIMIKLSNLYGKYFIIISISVI 218 >gi|254426916|ref|ZP_05040623.1| Bacterial type II secretion system protein F domain [Alcanivorax sp. DG881] gi|196193085|gb|EDX88044.1| Bacterial type II secretion system protein F domain [Alcanivorax sp. DG881] Length = 291 Score = 41.6 bits (96), Expect = 0.049, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 50/130 (38%), Gaps = 3/130 (2%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS---LSESISRMVR 74 + + AGL + + +I Q + R+ L S ++++ + Sbjct: 148 ELCHMTRMLMEAGLSLERVLRIIGVQGRPLLPILIARIDRFNRLMKSGAERTQALDELGE 207 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + ++ SQLG +S +L + ++ + + + + + AK + ++ Sbjct: 208 NKRIPVLRSYVVLMKQSSQLGAGVSHSLDQIIDEAQNVERNRIREETNRIGAKMTVIMMA 267 Query: 135 SLPFCVSTLV 144 + + L+ Sbjct: 268 FMLPALFILI 277 >gi|149177766|ref|ZP_01856366.1| probable type IV pilus assembly protein TapC [Planctomyces maris DSM 8797] gi|148843416|gb|EDL57779.1| probable type IV pilus assembly protein TapC [Planctomyces maris DSM 8797] Length = 370 Score = 41.6 bits (96), Expect = 0.049, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 7/133 (5%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ L + + +G P+ A + + + + + F ++E H G S+ Sbjct: 237 PDVLRFLHITTESGRPLLGAFETLSHTTKNPYLSARFNAILEDVHKGNDCWTSLHDYSLL 296 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + + +Q GNLS AL +++ + R N + + +E + Sbjct: 297 TPSEVR------LLQSAQRAGNLSWALKAIAKGIERRINYRLALIREYLEPAFILSVGCL 350 Query: 136 LPFCVSTLVYFTS 148 + V L Sbjct: 351 VGIFVIGLFLPLV 363 >gi|86152581|ref|ZP_01070786.1| general secretory pathway protein F [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843466|gb|EAQ60676.1| general secretory pathway protein F [Campylobacter jejuni subsp. jejuni HB93-13] Length = 393 Score = 41.6 bits (96), Expect = 0.049, Method: Composition-based stats. Identities = 21/181 (11%), Positives = 56/181 (30%), Gaps = 10/181 (5%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 ++F + GL V +A+ + +++++ L +L+++ Sbjct: 50 QRLKDENFILFFKELALLCEVGLSVQEAIKEL---YLMHSCKIMKKILDNLILAQNLNQA 106 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 ++ + ++ G +SE + +S++ + +++ Sbjct: 107 FENA-----NFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPTL 161 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMINFD 186 I + V L H++L + GI + L + F Sbjct: 162 VFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDSYGIFCIFLFVVFI 221 Query: 187 V 187 V Sbjct: 222 V 222 >gi|313896089|ref|ZP_07829643.1| type II secretion system protein F domain protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312975514|gb|EFR40975.1| type II secretion system protein F domain protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 405 Score = 41.6 bits (96), Expect = 0.050, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 46/144 (31%), Gaps = 7/144 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR--SEFRRVIETQHLGLSLSESISRMVRYM 76 + + + AG+PV +A+ I + + G +LS+++ R R Sbjct: 70 LFEELAALLAAGMPVHEALGQIAAGADAASAYGRLVAVLHADVLCGTALSQAMERRPR-- 127 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 S + + G L A + L + ++ +++ G L Sbjct: 128 ---VFSPSVVGMVRAGEESGTLDHIFAETAAFLTEAHTLRESMKSALAYPLFLLVATGFL 184 Query: 137 PFCVSTLVYFTSPGYMNVLINDPR 160 ++ + + L +P Sbjct: 185 IVLMTMFILPVFASLLRDLGAEPP 208 >gi|307748335|gb|ADN91605.1| General secretory pathway protein F [Campylobacter jejuni subsp. jejuni M1] Length = 393 Score = 41.6 bits (96), Expect = 0.051, Method: Composition-based stats. Identities = 21/181 (11%), Positives = 56/181 (30%), Gaps = 10/181 (5%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 ++F + GL V +A+ + +++++ L +L+++ Sbjct: 50 QRLKDENFILFFKELALLCEVGLSVQEAIREL---YFMYSCKIMKKILDNLILAQNLNQA 106 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 ++ + ++ G +SE + +S++ + +++ Sbjct: 107 FENA-----NFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPTL 161 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMINFD 186 I + V L H++L + GI + L + F Sbjct: 162 VFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFI 221 Query: 187 V 187 V Sbjct: 222 V 222 >gi|227484638|ref|ZP_03914954.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] gi|227237358|gb|EEI87373.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] Length = 366 Score = 41.6 bits (96), Expect = 0.051, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 47/147 (31%), Gaps = 9/147 (6%) Query: 28 RAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 +G+ + D++ +I Q + V VI GL ES + + S Sbjct: 39 NSGISLYDSLNIINQQGTDKKVIKAISLVIAGLKKGLDPYESF-----CLANEYFSPLVL 93 Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 G L + L +LS + + K+ V+ ++ + L+ F Sbjct: 94 AFIKTGTKTGYLGKILRDLSDFIFEESKNKSTVKQAMTYPIL---VLVVSILVIIALIKF 150 Query: 147 TSPGYMNVLINDPRGHMLLGVAAAFML 173 P ++ + L F+ Sbjct: 151 VMPSFIEIFDKSEITLPLPTRILLFVS 177 >gi|229816457|ref|ZP_04446758.1| hypothetical protein COLINT_03511 [Collinsella intestinalis DSM 13280] gi|229807999|gb|EEP43800.1| hypothetical protein COLINT_03511 [Collinsella intestinalis DSM 13280] Length = 222 Score = 41.6 bits (96), Expect = 0.052, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 52/146 (35%), Gaps = 1/146 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ L + + + DI+ + AGL ++++ S + + + Sbjct: 67 LEMLRPRSRGIGMGEVAEMTDIVRLGLSAGLSFDASLSLYCEGRSGELAQLMEKALFCWQ 126 Query: 61 L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + S E++ R+ + ++ + F+ +S +LG L+E L R +R + Sbjct: 127 VGVTSRDEALDRVAQDAGVRALGSFAAAVSQALELGAPLAETLEGQGREMRAAHRAHVER 186 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVY 145 + K + + + Sbjct: 187 EIERAPVKLLIPTGTLILPALLLSIV 212 >gi|13475688|ref|NP_107255.1| general secretion proteinF [Mesorhizobium loti MAFF303099] gi|14026444|dbj|BAB53041.1| general secretion protein F [Mesorhizobium loti MAFF303099] Length = 405 Score = 41.6 bits (96), Expect = 0.052, Method: Composition-based stats. Identities = 15/140 (10%), Positives = 44/140 (31%), Gaps = 7/140 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D + + AG V A+ + G+++ R + + V++ G ++E+ + + Sbjct: 67 DLSRLFSELSVLLNAGFTVDRALGAVISGEANRQRRQQLQSVLDLTTGGRPIAEAFAALP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 P + + G ++ L+ +A + ++ Sbjct: 127 GITP------DVAALLASGERSGKMAFICQRLADTFEATAKRRAAIIEALAYPAFLLLVM 180 Query: 134 GSLPFCVSTLVYFTSPGYMN 153 ++T++ Sbjct: 181 SGALVILATVLVPALEPIFE 200 >gi|330863524|emb|CBX73640.1| hypothetical protein YEW_CV11520 [Yersinia enterocolitica W22703] Length = 402 Score = 41.6 bits (96), Expect = 0.053, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISR 71 D + V A +P+ +A+A+I Q + V S ++ + G SLS+S+S+ Sbjct: 62 NRDLILITRQMSILVNAAIPLDEALALIENQSTKSKVDSVIHKIRKRVLEGHSLSDSLSQ 121 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + +L G+L L+NL+ + + +K+K+ + Sbjct: 122 FPAI-----FNSLYRSMIAAGELSGHLGLVLSNLADHIEQTRKVKSKITQTLIYPAILVL 176 Query: 132 II 133 + Sbjct: 177 VS 178 >gi|307595026|ref|YP_003901343.1| type II secretion system F domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307550227|gb|ADN50292.1| Type II secretion system F domain protein [Vulcanisaeta distributa DSM 14429] Length = 507 Score = 41.6 bits (96), Expect = 0.053, Method: Composition-based stats. Identities = 17/162 (10%), Positives = 46/162 (28%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 + P + ++ G ++ A V + E+ + S++++ Sbjct: 75 KENIEWELPFFVVLLDIIHDVGGDITHAFEVSGRIGLKWISREWSLIRRYSLTTNSITKA 134 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + R P E F G+L + ++ + + + + Sbjct: 135 MQLRARLHPSIEFQRFINGYVSVWGYSGDLGNYVRSVESTYLSTLSNRLSSLSKQIIDIV 194 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 A + + + ++ +L P +LL Sbjct: 195 VAIVSSLIVLILFVIITTILGMNYAILYLMPAIALLLPAIIL 236 >gi|327310830|ref|YP_004337727.1| hypothetical protein TUZN_0932 [Thermoproteus uzoniensis 768-20] gi|326947309|gb|AEA12415.1| hypothetical protein TUZN_0932 [Thermoproteus uzoniensis 768-20] Length = 563 Score = 41.6 bits (96), Expect = 0.053, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 52/157 (33%), Gaps = 8/157 (5%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQHLGLSL 65 R P + V+ GL + AV I+ + + + V+ G + Sbjct: 338 RRWNITAALPFFTRDLSELVKTGLSPAQAVVRIMERKTYNKQFDRFMKGVMRQIASGKTF 397 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM----KAKVQA 121 E++ M + + +++ G E A L+ R+ ++ ++ V+ Sbjct: 398 YEAM--MAEGSKAPWFARVVLSATAEAERLGARHEIFAELADTSRELVDILKAARSNVRG 455 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158 + + II + V + F Y + + Sbjct: 456 AVIFGLMTIAIIAVMLGGVVKTLLFQVADYASGITTT 492 >gi|332160536|ref|YP_004297113.1| general secretion pathway protein F [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664766|gb|ADZ41410.1| general secretion pathway protein F [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 402 Score = 41.6 bits (96), Expect = 0.053, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISR 71 D + V A +P+ +A+A+I Q + V S ++ + G SLS+S+S+ Sbjct: 62 NRDLILITRQMSILVNAAIPLDEALALIENQSTKSKVDSVIHKIRKRVLEGHSLSDSLSQ 121 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + +L G+L L+NL+ + + +K+K+ + Sbjct: 122 FPAI-----FNSLYRSMIAAGELSGHLGLVLSNLADHIEQTRKVKSKITQTLIYPAILVL 176 Query: 132 II 133 + Sbjct: 177 VS 178 >gi|255994749|ref|ZP_05427884.1| putative bacterial type II secretion system protein F domain protein [Eubacterium saphenum ATCC 49989] gi|255993462|gb|EEU03551.1| putative bacterial type II secretion system protein F domain protein [Eubacterium saphenum ATCC 49989] Length = 353 Score = 41.6 bits (96), Expect = 0.053, Method: Composition-based stats. Identities = 20/160 (12%), Positives = 58/160 (36%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS------EFRR 54 ++ + K+ L + P+ ++ + + AG DA+ + Sbjct: 197 LEKIRKESHQDVLMNLPSFINRYILLINAGAMPEDAMKRASESEKNMFGKGYFSELITDL 256 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 + SLS+ + + + + +++I+ G ++S L +++L + Sbjct: 257 YDRAEKSKSSLSKELYDAALRLGIWQFIRVTSIITDSMYTGSDMSHKLTREAKMLWFERK 316 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 A+ + E K + ++ + ++ P M++ Sbjct: 317 KLAESRGRLAEVKLTMPLLLL---LLVLMIVTIGPATMDM 353 >gi|146303434|ref|YP_001190750.1| type II secretion system protein [Metallosphaera sedula DSM 5348] gi|145701684|gb|ABP94826.1| type II secretion system protein [Metallosphaera sedula DSM 5348] Length = 615 Score = 41.6 bits (96), Expect = 0.053, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 51/172 (29%), Gaps = 12/172 (6%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 N L I +RAGL + I + +R+ LG L ++ + + Sbjct: 395 NLLRAISEGIRAGLSPETIIKNIKESQEMGKLSYILKRIYAYISLGYPLRDAFLKGAEEI 454 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA----KVQALSMEAKASAWI 132 ++ +G E++ +L+ + + +K KV+ L I Sbjct: 455 VDFTSRISLVSMADMIDIGSLTPESIESLAEQVETQIKIKREYESKVKILLYTPYIGVII 514 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRG-------HMLLGVAAAFMLIGIM 177 +S + G + G + A A M+ Sbjct: 515 SIIAVNLLSAAILGLITGNAYAFSSGALGEARVLLPQAVYITAIASMINAFF 566 >gi|28211266|ref|NP_782210.1| putative general secretion pathway protein F [Clostridium tetani E88] gi|28203706|gb|AAO36147.1| putative general secretion pathway protein F [Clostridium tetani E88] Length = 351 Score = 41.6 bits (96), Expect = 0.053, Method: Composition-based stats. Identities = 20/138 (14%), Positives = 51/138 (36%), Gaps = 6/138 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + +G+ V+DA+ + + V+S + + +LG ++SE++S P Sbjct: 14 FCKQLKLLMASGMNVTDALEITGDFFTRKSVKSSIEEIRKKVYLGENISEAMSYFRGIYP 73 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 F + + G L+E L L ++ + K++ + + + + Sbjct: 74 -----SFLINMIKLGEDNGILTEVLEKLELYYENQCKISNKIKEIIIYPLFLIFFSIIIS 128 Query: 138 FCVSTLVYFTSPGYMNVL 155 +S + + Sbjct: 129 LFLSGFILPQFESILRDF 146 >gi|17548688|ref|NP_522028.1| putative general secretion pathway GSPF-related transmembrane protein [Ralstonia solanacearum GMI1000] gi|17430936|emb|CAD17618.1| putative general secretion pathway gspf-related transmembrane protein [Ralstonia solanacearum GMI1000] Length = 397 Score = 41.6 bits (96), Expect = 0.054, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 9/170 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++ R K + +RAGL VS+A+ + + P +R++ + Sbjct: 49 LARSLQSRRRKVDAGL--VCIELGGLLRAGLTVSEALDSLAHRDDHPNVGVYRQLYDGLL 106 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 GL LSES+ ++ P ++ G + +AL ++ + ++ ++ KV Sbjct: 107 SGLPLSESMKQVEGGFPG-----ILVAAIQANERSGRIPDALDEYAKYAQAQEALRKKVV 161 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN--VLINDPRGHMLLGVA 168 + ++ + + V + + +LL V Sbjct: 162 SAAVYPATVIGFGLLVVLFLLAYVIPRFAMVYDGTAMQMSGPTRILLAVG 211 >gi|117929187|ref|YP_873738.1| type II secretion system protein [Acidothermus cellulolyticus 11B] gi|117649650|gb|ABK53752.1| type II secretion system protein [Acidothermus cellulolyticus 11B] Length = 203 Score = 41.6 bits (96), Expect = 0.055, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 48/143 (33%), Gaps = 5/143 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P A D++ + G+ A+ ++V D + + V LG S ++ + + Sbjct: 62 LPLACDLLAACLETGVTSRRALELVVEALGRDSLNTPLPAVSSALRLGASAVQAWAEVPA 121 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-I 133 + EV+ G L+ L L+ R A + + + + Sbjct: 122 ELGWTEVAR---AFGQAENSGLALAGTLTRLADERRRTVRAWAAQATARAGVRMALPLGV 178 Query: 134 GSLPFCVSTLVYFTSPGYMNVLI 156 LP + V G+ + L Sbjct: 179 CFLPAFLLVGVLPVIFGFAHSLW 201 >gi|167947283|ref|ZP_02534357.1| type IV pilin biogenesis protein PilC [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 151 Score = 41.3 bits (95), Expect = 0.056, Method: Composition-based stats. Identities = 14/135 (10%), Positives = 41/135 (30%), Gaps = 5/135 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + AG+P+ +A+ + G + + V SE + ++ S + Sbjct: 14 AAIARFARTLSTMSSAGVPLVEALESVSGATGNVVYSEAVL-----RMREDVATGQSLQL 68 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + G+L + L+ ++ ++ + + +E + Sbjct: 69 AMRQRHIFPNMVIQMVSIGEESGSLDDMLSKVADFFEEQVDNAVDALSSLLEPLIMVILG 128 Query: 134 GSLPFCVSTLVYFTS 148 + V + Sbjct: 129 TLIGGLVVAMYLPIF 143 >gi|300779982|ref|ZP_07089838.1| membrane protein [Corynebacterium genitalium ATCC 33030] gi|300534092|gb|EFK55151.1| membrane protein [Corynebacterium genitalium ATCC 33030] Length = 232 Score = 41.3 bits (95), Expect = 0.057, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 66/164 (40%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 L +V ++RAG V++A A Q++D ++ + S + ++ PL Sbjct: 64 LGHLVAALRAGSSVAEACARAAEQTADNAPADLASELRRVAAHTRSGGSGAAILAASPLP 123 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 E+ + + ++LG +++ L + L + + A +A+A ++ LP Sbjct: 124 ELRDVGVLWGLSAKLGIPVADLLGSARSRLDNAVRHRNATTAALAGPRATAVVLSVLPLA 183 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + +L G +LL V A + G + +I Sbjct: 184 GILMGQAMGARPVALLTGGGLGGLLLLVGTALVCAGFATSQAII 227 >gi|153953739|ref|YP_001394504.1| ExeF3 [Clostridium kluyveri DSM 555] gi|219854357|ref|YP_002471479.1| hypothetical protein CKR_1014 [Clostridium kluyveri NBRC 12016] gi|146346620|gb|EDK33156.1| ExeF3 [Clostridium kluyveri DSM 555] gi|219568081|dbj|BAH06065.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 397 Score = 41.3 bits (95), Expect = 0.059, Method: Composition-based stats. Identities = 22/202 (10%), Positives = 61/202 (30%), Gaps = 35/202 (17%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 + N + +G+ + + +I Q+ + ++ R+IE G +L+ES+ Sbjct: 60 EEVLANFCGQTAMILNSGVNLLSGLEIIQQQTKNQNMKKVILRIIEGIKKGKNLAESMRA 119 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 ++ + + ++ GN+ L N+ + +M K++ S+ Sbjct: 120 ------CEKFPKLLIDMVMTGEVSGNVDTVLYNMESFYKREASMNNKIKNASLYPTLILV 173 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML------------------ 173 + + + VY + ++ + L Sbjct: 174 VAVGMMLFFNFFVYPEIRDLFT--GENLPAVTIIVLGIMNFLNNNYLYIITGIIILIGIL 231 Query: 174 --------IGIMVMRLMINFDV 187 + + ++ V Sbjct: 232 KYMSTIPKVAYFWGKTVLKIPV 253 >gi|255657253|ref|ZP_05402662.1| putative type IV pilus-assembly protein [Clostridium difficile QCD-23m63] gi|296451908|ref|ZP_06893624.1| probable type IV pilus-assembly protein [Clostridium difficile NAP08] gi|296879699|ref|ZP_06903674.1| probable type IV pilus-assembly protein [Clostridium difficile NAP07] gi|296259222|gb|EFH06101.1| probable type IV pilus-assembly protein [Clostridium difficile NAP08] gi|296429288|gb|EFH15160.1| probable type IV pilus-assembly protein [Clostridium difficile NAP07] Length = 361 Score = 41.3 bits (95), Expect = 0.060, Method: Composition-based stats. Identities = 14/148 (9%), Positives = 45/148 (30%), Gaps = 6/148 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR + + + + +G+ + +A+ + + E ++ + Sbjct: 220 KRINQLVAT-TRFSRALSILISSGIQIVEAIDMSASVIDNEFIYERLKISNNYIKKGNSI 278 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + P ++ + G L ++L +++ + N K + +E Sbjct: 279 GKSLNLANIFPK-----LFISMTNTGEESGKLDKSLDVINKFYENELNNKIEQIMKFIEP 333 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154 ++ + V +V + Sbjct: 334 VLIVFMGLIIGIFVLAMVVPMFDAITSF 361 >gi|187925425|ref|YP_001897067.1| type II secretion system protein [Burkholderia phytofirmans PsJN] gi|187716619|gb|ACD17843.1| type II secretion system protein [Burkholderia phytofirmans PsJN] Length = 409 Score = 41.3 bits (95), Expect = 0.060, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 46/156 (29%), Gaps = 2/156 (1%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + +RAGLP++ A+ ++ + + R V Sbjct: 73 FTRQLASLLRAGLPLAPALDLLAQAETSRRQGMARIVGALARDITG--GLRFSAALQRHP 130 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + + G L+ LA ++ +AKV+A A + ++ Sbjct: 131 AQFNALYCQLVEVGEAAGALAAVLARIADDRERAAAQRAKVRAALTYPVAILVLAMAITA 190 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + V T + +A + + Sbjct: 191 ALLVWVVPTFKQIFDGFGARLPAPTQFVLALSSGVA 226 >gi|330893149|gb|EGH25810.1| type II secretion system, protein F domain [Pseudomonas syringae pv. mori str. 301020] Length = 179 Score = 41.3 bits (95), Expect = 0.061, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 49/101 (48%) Query: 47 PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLS 106 P++ R+ LG+SL ++ E F+ + V + GGN SE + NL Sbjct: 2 PLKDGMSRIERNVQLGVSLPDAARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLI 61 Query: 107 RILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 +++RDR+ +++A++ E + +A ++ LP ++ Sbjct: 62 KLIRDREQAGRQLRAMTGETRMTALVLALLPVGMAGYFLTV 102 >gi|300690940|ref|YP_003751935.1| type II secretion system protein F (gspF) [Ralstonia solanacearum PSI07] gi|299078000|emb|CBJ50642.1| putative type II secretion system protein F (gspF) [Ralstonia solanacearum PSI07] Length = 397 Score = 41.3 bits (95), Expect = 0.061, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 9/170 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++ R K + +RAGL VS+A+ + + P +R++ + Sbjct: 49 LARSLQNRRRKVDAGL--VCIELGGLLRAGLTVSEALDSLAHRDDHPNVGVYRQLYDGLL 106 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 GL LSES+ ++ P ++ G + +AL ++ + ++ ++ KV Sbjct: 107 SGLPLSESMKQVEGVFPG-----ILVAAIQANERSGRIPDALDEYAKYAQAQEALRKKVV 161 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN--VLINDPRGHMLLGVA 168 + ++ + + V + + +LL V Sbjct: 162 SAAVYPATVIGFGLLVVLFLLAYVIPRFAMVYDGTAMQMSGPTRILLAVG 211 >gi|227825202|ref|ZP_03990034.1| predicted protein [Acidaminococcus sp. D21] gi|226905701|gb|EEH91619.1| predicted protein [Acidaminococcus sp. D21] Length = 395 Score = 41.3 bits (95), Expect = 0.061, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 55/146 (37%), Gaps = 6/146 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + +++ +P+ A+ ++ + + V RR+ E G SLS+++ R + + Sbjct: 68 LGILLKSEIPILRALDIMGLRGNAKVAFLCRRIGEELKKGRSLSKALLRYEQAIG----- 122 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + V+ + G S LS R ++ + ++ + G + Sbjct: 123 ALAPVLLEAGEKSGRTSVLCLRLSDSYRRKRELWKEMMGALFYPLLVLGLGGLVVLYFII 182 Query: 143 LVYFTSPGYMNVL-INDPRGHMLLGV 167 + G L ++ P G L+ + Sbjct: 183 AILPLFVGLYGELNLSVPTGLSLMMI 208 >gi|315605668|ref|ZP_07880701.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315312623|gb|EFU60707.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 425 Score = 41.3 bits (95), Expect = 0.061, Method: Composition-based stats. Identities = 22/158 (13%), Positives = 47/158 (29%), Gaps = 7/158 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVI-----VGQSSDPVRSEFRRVIETQHLGLSLSES 68 + + + +R+G P ++A + G + + + R++ Sbjct: 103 RELSLLVAEVSTRLRSGSPAAEAWRLALGRIGAGGAEEQGQDSCPRIVAQWARTQGGWSL 162 Query: 69 ISRMVRYMPLQEVSFF--STVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 S R S F +LG L++ L + + D + + + S Sbjct: 163 PSARSRSPDAARSSAFSIVVACRYSHRLGAPLADVLDAIGGAIDDAQAVSEARRVASAGP 222 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 SA ++ +LP Y G + Sbjct: 223 LMSARVLSALPLVGIVAAYSLGASPWAFYTGGGAGSLC 260 >gi|153951437|ref|YP_001398771.1| general secretory pathway protein F [Campylobacter jejuni subsp. doylei 269.97] gi|152938883|gb|ABS43624.1| general secretory pathway protein F [Campylobacter jejuni subsp. doylei 269.97] Length = 392 Score = 41.3 bits (95), Expect = 0.061, Method: Composition-based stats. Identities = 21/181 (11%), Positives = 56/181 (30%), Gaps = 10/181 (5%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 ++F + GL V +A+ + +++++ L +L+++ Sbjct: 50 QRLKDENFILFFKELALLCEVGLSVQEAIKEL---YLMHSCKIMKKILDNLILAQNLNQA 106 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 ++ + ++ G +SE + +S++ + +++ Sbjct: 107 FENA-----NFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPTL 161 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMINFD 186 I + V L H++L + GI + L + F Sbjct: 162 VFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDSYGIFCIFLFVVFI 221 Query: 187 V 187 V Sbjct: 222 V 222 >gi|111026115|ref|YP_708398.1| hypothetical protein RHA1_ro10047 [Rhodococcus jostii RHA1] gi|110824958|gb|ABH00240.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length = 299 Score = 41.3 bits (95), Expect = 0.062, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 51/137 (37%), Gaps = 1/137 (0%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESI 69 +F + +D++ R G+ + ++ V + E G + ++ Sbjct: 156 EFAQALSSYIDLVALCRRGGIGTTQSLERAAQVGDSWVFLRLDEELYEAGRSGEAPWNAL 215 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 +R+ + + L E+ + ++++ G ++ +L + LR + + A K + Sbjct: 216 TRVSQELGLTELGDLADIMNMTGDKGASVYASLRAKAAGLRSAQASAEQGAAAEATEKLA 275 Query: 130 AWIIGSLPFCVSTLVYF 146 + G + L+ Sbjct: 276 MPLAGLAGLFIMLLLIP 292 >gi|21228399|ref|NP_634321.1| hypothetical protein MM_2297 [Methanosarcina mazei Go1] gi|20906873|gb|AAM31993.1| conserved protein [Methanosarcina mazei Go1] Length = 645 Score = 41.3 bits (95), Expect = 0.063, Method: Composition-based stats. Identities = 14/162 (8%), Positives = 48/162 (29%), Gaps = 7/162 (4%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-------FRRV 55 I+ R + +F ++L ++ R + G +A A E Sbjct: 389 KKIRDRIKQMEQEFADSLFVLGRRISEGKAPEEAFAHTARTMEGSKIGEAYEGISMNLLS 448 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + T E + + + ++ L+ L++ ++ Sbjct: 449 MRTNLKDAVFDEEFGAFRHVYSERIRNTMLLFTESVHKNHEAAGASIIKLADHLKELSDV 508 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + +++ + ++ ++ + + + ++N Sbjct: 509 EERIRRSLYDVTSTMRTTAAIFAPLIAGITLALSEVITKILN 550 >gi|304315797|ref|YP_003850942.1| type II secretion system F domain [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777299|gb|ADL67858.1| Type II secretion system F domain [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 275 Score = 41.3 bits (95), Expect = 0.064, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 58/146 (39%), Gaps = 2/146 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQ 59 ++ + K R KF + P +D+ A +P+ D + + S VR+ ++ Sbjct: 117 IQSVRKDRIEKFRREMPEIVDLFELGATADVPLEDIFLITAQSAKSKEVRNAITKLAAEY 176 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + ++ + + L E + + + + G + + L+ LS L + K Sbjct: 177 IMTREKEVALRKFANEVSLPEANVLAMALLQGDRTGRTV-DILSTLSSSLFNTAASKVAR 235 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVY 145 Q SME K + I + V+ +Y Sbjct: 236 QDKSMEYKVLSAIFFLMASIVTLYIY 261 >gi|154246051|ref|YP_001417009.1| type II secretion system protein [Xanthobacter autotrophicus Py2] gi|154160136|gb|ABS67352.1| type II secretion system protein [Xanthobacter autotrophicus Py2] Length = 403 Score = 41.3 bits (95), Expect = 0.064, Method: Composition-based stats. Identities = 17/143 (11%), Positives = 47/143 (32%), Gaps = 6/143 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 +D + ++AG + +A+ ++ G + +R+ R++ G S +E+ + Sbjct: 64 EDVTLFTRDLALLLKAGARLDEALELLSGDADLGRMRAVVRKLRADVLAGQSFAEAAAGE 123 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P + + G + L L++ + ++ K+ Sbjct: 124 PKLFPP-----VYVALVRVGEASGTMDRILDLLAQERARAEQLRRKLMEALQYPAFVLAA 178 Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155 G + V + + Sbjct: 179 AGGVLVFFLLFVLPQFSTVLRDM 201 >gi|84495077|ref|ZP_00994196.1| hypothetical protein JNB_09764 [Janibacter sp. HTCC2649] gi|84384570|gb|EAQ00450.1| hypothetical protein JNB_09764 [Janibacter sp. HTCC2649] Length = 246 Score = 41.3 bits (95), Expect = 0.064, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 61/173 (35%), Gaps = 8/173 (4%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVG-----QSSDPVRSEFRRVIETQHLGLSLSESISR 71 + ++ + AGLP ++A + + ++ Q G + + + R Sbjct: 68 ADFAELSAVGLDAGLPAAEAARLACDVGGSAATRPEFAVLGEQITAAQGRGSPIGQCLLR 127 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + ++++F + S+ + G + A + +LR+R + L+ +AS W Sbjct: 128 VAE--GDRDLAFLAAAWSLTDEFGVAAAPAARASAAVLRERAESDDRRMVLAAGPRASMW 185 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 ++ LP + + + + V G + R ++ Sbjct: 186 LLTLLPLTGPLVALVLGL-PVGDVYGSTASLVAAVVGLVLTGCGWLWSRTVLR 237 >gi|255324192|ref|ZP_05365314.1| putative membrane protein [Corynebacterium tuberculostearicum SK141] gi|255298708|gb|EET78003.1| putative membrane protein [Corynebacterium tuberculostearicum SK141] Length = 198 Score = 41.3 bits (95), Expect = 0.065, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 41/124 (33%), Gaps = 3/124 (2%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 +++ + AGL V A + + + + V +G+ + M + L+ Sbjct: 64 VELFAACLAAGLSVHGATTAVARTADAQTKELWETVAALLGVGVPAQSAWGHMKSHAGLE 123 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + ++ + Q G ++ + LR + A QA + + Sbjct: 124 D---LAQLVIMSGQSGATIAAGCQRICTSLRAEASAHATAQAERAGVFIALPLAVCFLPA 180 Query: 140 VSTL 143 L Sbjct: 181 FIVL 184 >gi|291614290|ref|YP_003524447.1| type II secretion system F domain protein [Sideroxydans lithotrophicus ES-1] gi|291584402|gb|ADE12060.1| Type II secretion system F domain protein [Sideroxydans lithotrophicus ES-1] Length = 396 Score = 41.3 bits (95), Expect = 0.065, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 49/147 (33%), Gaps = 6/147 (4%) Query: 16 FPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + + AGL +A+ ++ + R+ +RVI + + G +LS ++ + Sbjct: 60 LMLFSQELRALLDAGLTQVEALETMVEKERHPHNRNILQRVILSLYEGHALSHALQQFPE 119 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 P S+ G+L E+LA ++ KV + S+ Sbjct: 120 IFPP-----LYIATIHASEKTGDLDESLARYIDYQSRMDVVRKKVVSASIYPMLLLGTGA 174 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRG 161 + + V + +D Sbjct: 175 LVTLFLMLYVVPRFSKVYEDIGSDLPF 201 Score = 40.1 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 15/134 (11%), Positives = 39/134 (29%), Gaps = 6/134 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + +R G+P+ A+ ++ G +R + + G +S ++ Sbjct: 262 QLARFYRTLGMLLRGGIPIVMALEMVSGLLEQALRKQLALASDCIREGQPISYAMETYGL 321 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 P + + + G + E ++ + E A+I Sbjct: 322 TTP------VALRLLRVGEHTGGMGEMTERIANFYDEEMARWVDWFTRLFEPLLMAFIGL 375 Query: 135 SLPFCVSTLVYFTS 148 + V + + Sbjct: 376 VIGGIVILMYFPIF 389 >gi|220927574|ref|YP_002504483.1| hypothetical protein Ccel_0115 [Clostridium cellulolyticum H10] gi|219997902|gb|ACL74503.1| hypothetical protein Ccel_0115 [Clostridium cellulolyticum H10] Length = 319 Score = 41.3 bits (95), Expect = 0.065, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 64/183 (34%), Gaps = 12/183 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ IK+R P +D S + + A+ S+ + RV ++ Sbjct: 148 LKYSIKQRI-------PAFIDSFRSSFVSHNRIKPALQECCSNSNKHLGRIMLRVSDSSD 200 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L SL R+ + F T++ + GG L L L++ + N++ K Sbjct: 201 LNDSLRAVRDRISDTW----FNIFVTLLVNYRENGGELINQLYKLNKTITRYNNIEKKKN 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY-FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + V L+ M + N + + + + LI + ++ Sbjct: 257 RRLIWYEFFTLGASIFSLPVIMLINRMILGTNMRLYYNTAQASGKIAIYSISALIVVRIL 316 Query: 180 RLM 182 R + Sbjct: 317 RRL 319 >gi|320120323|gb|EFE28506.2| type IV pilus biogenesis protein PilC [Filifactor alocis ATCC 35896] Length = 361 Score = 41.3 bits (95), Expect = 0.066, Method: Composition-based stats. Identities = 15/169 (8%), Positives = 52/169 (30%), Gaps = 4/169 (2%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 +++G+ ++ ++ V+ QS + + + Sbjct: 27 FCRQESIMLKSGMDLNRSLDVLAKQSKSKKLKKNLFHLSDSVKKGT----ELSKSMENQG 82 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + ++ G ++E + ++ ++ K++ M A+I+ + Sbjct: 83 NAFPYLLKRTVQAGEMSGQMAEIIEKMAVHYEKDMKLRRKIRGAMMYPIILAFIVVAAVA 142 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + T V + + + +L+ + L++ F + Sbjct: 143 ILLTQVMPNFVKMFEGADMELPALTRFVMNLSDLLVHNWIWILLVLFAI 191 Score = 38.9 bits (89), Expect = 0.28, Method: Composition-based stats. Identities = 9/130 (6%), Positives = 32/130 (24%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+P+ A+ + + + + + + + + Sbjct: 230 FTRTLSTMLYSGIPMIQALRAAGETTGNKFVE-----SKIEETVEGIEKGMGMTAQLAAT 284 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L E L + + + +E + + Sbjct: 285 NIFPPMMLSMIGIGEESGRLDEMLEKTAEYYDEEMEAALEALVTMLEPLLIVIMGVVIGT 344 Query: 139 CVSTLVYFTS 148 V + Sbjct: 345 IVIAMYLPMF 354 >gi|109899536|ref|YP_662791.1| type II secretion system protein [Pseudoalteromonas atlantica T6c] gi|109701817|gb|ABG41737.1| type II secretion system protein [Pseudoalteromonas atlantica T6c] Length = 396 Score = 41.3 bits (95), Expect = 0.066, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 54/190 (28%), Gaps = 25/190 (13%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65 +R P L + +G+ + DA+ + + F + G SL Sbjct: 53 RRVKVTDLVIP--LQELATLTSSGVALIDAIKALGQNKEHPNLAKGFMLMASRIEGGESL 110 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S ++ P + + +LGG L AL N S L + +K V+ Sbjct: 111 SAALMASGLPFPQ-----YVAHLVSAGELGGQLPIALTNASEQLNYEQAIKNDVRGALTY 165 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMN-----------------VLINDPRGHMLLGVA 168 + + V ++ + + P + V Sbjct: 166 PLVLIGSGLAAMLIIFFAVVPKFSHLLDGEKELPALAYLVLTAGQAVNDSPYTVLAFIVG 225 Query: 169 AAFMLIGIMV 178 ++ I + Sbjct: 226 IVILIASIFM 235 >gi|297543560|ref|YP_003675862.1| Type II secretion system F domain-containing protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841335|gb|ADH59851.1| Type II secretion system F domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 274 Score = 41.3 bits (95), Expect = 0.067, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 2/156 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59 + + K R KF + P +D+ A +P+ D + + VR+ ++ Sbjct: 116 ISSVKKDRQEKFRREMPEIVDLFELGAAADVPLEDIFLITAQSAQAKEVRNALTKLAAEY 175 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + + R + L E + + + + G L E L+ LS L + K Sbjct: 176 IMTREKEGCLKRFCNEVNLPEANILAMALLQGERTGRTL-EILSVLSSSLFNTAAAKIAR 234 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 Q +ME K A + V+ +Y L Sbjct: 235 QDKAMEYKVLAATFFLMASIVTLYMYPYFTNIQGGL 270 >gi|121998800|ref|YP_001003587.1| type II secretion system protein [Halorhodospira halophila SL1] gi|121590205|gb|ABM62785.1| type II secretion system protein [Halorhodospira halophila SL1] Length = 396 Score = 41.3 bits (95), Expect = 0.067, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 48/160 (30%), Gaps = 7/160 (4%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 L + + AG P+S+A+ V Q+ D R + + Sbjct: 63 LRRLASVLEAGAPLSEALRVTAAQAPDAALRNGLRGVRYAVERGT----DLATAFGTEFP 118 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + G+L AL +++ + + A+++ + G+ Sbjct: 119 GLRPAHRALLAAGTWTGDLPAALGSVAAEIEREAAIVAQLRRALTYPA---VVAGAALTL 175 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ L+ P + + A G V+ Sbjct: 176 IALLLTAVVPRFAGLFEQSGEPLPAPTRAVLAASEGFAVV 215 Score = 33.9 bits (76), Expect = 9.4, Method: Composition-based stats. Identities = 17/137 (12%), Positives = 38/137 (27%), Gaps = 5/137 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 + R AG+P+ DA+ + R+ + Sbjct: 259 LEAALSRWSATLARLHGAGVPLLDALPRAAEAARG--ADLEPRLAHLGQRIGAGESLAEA 316 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + +P S + + + G L E L + + + R + + +E Sbjct: 317 LRKSLPE---SREISQLVAIGERSGRLEELLHEAATLHQQRLEARLQRAGALLEPALILL 373 Query: 132 IIGSLPFCVSTLVYFTS 148 + V+ L Sbjct: 374 LGAITAGVVAALYLPVF 390 >gi|311741045|ref|ZP_07714870.1| membrane protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311303847|gb|EFQ79925.1| membrane protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 198 Score = 41.3 bits (95), Expect = 0.068, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 41/124 (33%), Gaps = 3/124 (2%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 +++ + AGL V A + + + + V +G+ + M + L+ Sbjct: 64 VELFAACLAAGLSVHGATTAVARTADAQTKELWETVAALLGVGVPAQSAWGHMKGHAGLE 123 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + ++ + Q G ++ + LR + A QA + + Sbjct: 124 D---LAQLVIMSGQSGATIAAGCHRICTSLRAEASAHATAQAERAGVFIALPLAVCFLPA 180 Query: 140 VSTL 143 L Sbjct: 181 FIVL 184 >gi|213966042|ref|ZP_03394231.1| type II secretion system protein [Corynebacterium amycolatum SK46] gi|213951337|gb|EEB62730.1| type II secretion system protein [Corynebacterium amycolatum SK46] Length = 217 Score = 41.3 bits (95), Expect = 0.070, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 50/140 (35%), Gaps = 6/140 (4%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 II + +G+P+S A+ ++ + R+ +G + S + Sbjct: 81 IIGACLSSGMPLSQAMEAAADGANPELAEPLRQCSARLAVG-----AHSAWDSLAATPAL 135 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IGSLPFCV 140 +T S+ G L++AL + + R + + A+ A + + + LP V Sbjct: 136 EPLATAGRRASESGTVLAQALEDTAATYRSQAHDAAQAVAEKAGVLIAGPLALCFLPAFV 195 Query: 141 STLVYFTSPGYMNVLINDPR 160 + T G + + Sbjct: 196 VLGLVPTIAGLADEMFAGLM 215 >gi|94968603|ref|YP_590651.1| type II secretion system protein [Candidatus Koribacter versatilis Ellin345] gi|94550653|gb|ABF40577.1| type II secretion system protein [Candidatus Koribacter versatilis Ellin345] Length = 403 Score = 41.3 bits (95), Expect = 0.070, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 50/164 (30%), Gaps = 7/164 (4%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLS 66 R F + VRAGLP+ ++ +++ + + + V + G LS Sbjct: 56 RRKVSAQQFLIFNQQFLTLVRAGLPIVQSMELLMRRQKNQYFQKVLEDVRDRLKGGSLLS 115 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E+ T + + GNL E + R + + K+ A + Sbjct: 116 EAFEAQG------IFPKIYTTTLLAGEKSGNLEEVVGRYIAFQRLLLSFRKKLIASLIYP 169 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + L + T V L +D +A Sbjct: 170 SILVCGVVVLFSMLITWVVPRFALLFQDLGSDLPAITKFVLAFG 213 Score = 35.5 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 16/138 (11%), Positives = 39/138 (28%), Gaps = 7/138 (5%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESIS 70 ++ + GLP+ ++ S + R ++ G SL+ S+ Sbjct: 262 LKSQVSTFSRMLSTLLGGGLPLVPSLETAAASIGSKTLARGIRTASKSVREGRSLARSLE 321 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + S + + G L + L +++ + +E Sbjct: 322 ATAAFPD------LSVEMIEVGESTGALPQMLVSVAEFYEEDVQNALAAAMSLVEPVILI 375 Query: 131 WIIGSLPFCVSTLVYFTS 148 + + F + L Sbjct: 376 IMGMVVGFILIALYLPIF 393 >gi|307352531|ref|YP_003893582.1| type II secretion system F domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307155764|gb|ADN35144.1| Type II secretion system F domain protein [Methanoplanus petrolearius DSM 11571] Length = 600 Score = 41.3 bits (95), Expect = 0.072, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 46/129 (35%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 + P L I G+ + A+ ++ + SE + G S+S ++ Sbjct: 397 RRVEAQMPEFLRDIADMKDLGMTLQTAIEMVSSSKLGLLSSELKIASREVKWGYSVSSAL 456 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 RM + L V ++I S++ L + L L M++K +S A Sbjct: 457 VRMEERIGLVSVKRAISLIVKASEITDQLRDILTIAISDLDHYLKMQSKRFNVSFVYLAV 516 Query: 130 AWIIGSLPF 138 ++ + Sbjct: 517 IYLSFGIYL 525 >gi|328461764|gb|EGF34000.1| competence protein [Lactobacillus helveticus MTCC 5463] Length = 319 Score = 41.3 bits (95), Expect = 0.072, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 60/167 (35%), Gaps = 13/167 (7%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 LD + S+ G + +++ ++ + +++++ G S S + ++ Sbjct: 4 SFFLDYLKHSLENGFSLINSIELMPVLWPKK-KELMQKLVKRMKEGNSFSVELIQLG--- 59 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 S + + GNL E L L+ + R ++ K++A A ++ L Sbjct: 60 ----FSKTTVTQVNLALQQGNLIECLNQLAILSRLKQEQVKKLRAELSYPFVLAIMMVIL 115 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + + G +++ +L GI + +I Sbjct: 116 LVFMQSFISTQFNDRSEY-----SGDLIMLGLIGAVLAGIYFLARII 157 >gi|270284549|ref|ZP_05966317.2| conserved hypothetical protein [Bifidobacterium gallicum DSM 20093] gi|270276411|gb|EFA22265.1| conserved hypothetical protein [Bifidobacterium gallicum DSM 20093] Length = 273 Score = 41.3 bits (95), Expect = 0.072, Method: Composition-based stats. Identities = 18/153 (11%), Positives = 48/153 (31%), Gaps = 8/153 (5%) Query: 39 VIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNL 98 + S ++ I + + + ++ + + T+++ L Sbjct: 116 QLAHSSHRVTQAHQPMRIRDSMGRMQPHLLRAMLAQHCSVADSDQQLTLVAQGLLAAHML 175 Query: 99 SEALA-NLSRILRDRKNMKAKVQ-------ALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150 S L + + A+++ +++ ++ LP L Sbjct: 176 SAQLGCRAAVCCEAVRLAHARMRLQADLTANAFAMPRSTVRVLSVLPALTLLLGELLGAH 235 Query: 151 YMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + L G + L V A +G+ MR+++ Sbjct: 236 PIAFLCGSVLGWVCLCVGALCWGVGLWWMRMLL 268 >gi|311744032|ref|ZP_07717838.1| integral membrane protein [Aeromicrobium marinum DSM 15272] gi|311313162|gb|EFQ83073.1| integral membrane protein [Aeromicrobium marinum DSM 15272] Length = 304 Score = 41.3 bits (95), Expect = 0.073, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 62/155 (40%), Gaps = 1/155 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + K+R F LD++ ++ G V +A++ G S R +E+ Sbjct: 150 LSTEAKERRRDFRHVVSAFLDLVSMNLAGGRGVPEALSAAAGLSDGWAMVRLRDAMESAR 209 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 L + ++ + M ++E+S + +++ ++ G + ++LA + +R R+ A+ Sbjct: 210 LQGVTPWAALGDLGDEMAVKELSDLAAALALVAEDGAKVRQSLAARAASMRQRELTDAEG 269 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 +A + + L+Y + V Sbjct: 270 RAEQQSQSMLVAQLLLCLGFLLFLIYPAIANVVGV 304 >gi|195953607|ref|YP_002121897.1| type II secretion system protein [Hydrogenobaculum sp. Y04AAS1] gi|195933219|gb|ACG57919.1| type II secretion system protein [Hydrogenobaculum sp. Y04AAS1] Length = 359 Score = 41.3 bits (95), Expect = 0.073, Method: Composition-based stats. Identities = 19/163 (11%), Positives = 51/163 (31%), Gaps = 8/163 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71 D +L I + AG + A+ + + Q ++ ++ + + +G L + ++ Sbjct: 26 RKDIAFSLKQIYELINAGANLYTAIDIAIDLQDKPILKELYQNIKKDIEMGKPLHIAFAK 85 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + ++ NL + L + + K+KV + ++ Sbjct: 86 KPLPP-------ILSNMLYAAETSENLENVFKTVGDFLENMDSYKSKVISKAVYPSIVTL 138 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 F V + + + A M++ Sbjct: 139 FSILAVFISVNYVIPRIEDVLKSFNAKLPFITIFLMYFAKMVV 181 >gi|119719687|ref|YP_920182.1| type II secretion system protein [Thermofilum pendens Hrk 5] gi|119524807|gb|ABL78179.1| type II secretion system protein [Thermofilum pendens Hrk 5] Length = 284 Score = 40.9 bits (94), Expect = 0.077, Method: Composition-based stats. Identities = 22/164 (13%), Positives = 59/164 (35%), Gaps = 9/164 (5%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAV-IVGQSSDPVRSEFRRVIETQHL 61 + + R D P + +G+ + + ++ +S+ ++ E ++ Sbjct: 94 YRVYSRRITIEKDLPFTASYMAALSSSGMGLERLLERAVLYESNKEIKREIALILRDIKA 153 Query: 62 GL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL--RDRKNMKAK 118 ++SR P + ++ + GN L++ S +L ++++ Sbjct: 154 YGLDTLTALSRAALRSPSRSLAMLWLGLRETYITSGNFKSYLSHFSGVLLSEKTQSLRRV 213 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162 +SM A+ ++ + P T++ M++L G Sbjct: 214 TNTISMMAEVYTTLMVAAPLMFVTMLVI-----MDMLGGTVFGL 252 >gi|254773479|ref|ZP_05214995.1| hypothetical protein MaviaA2_02210 [Mycobacterium avium subsp. avium ATCC 25291] Length = 97 Score = 40.9 bits (94), Expect = 0.078, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 39/93 (41%) Query: 92 SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 G ++ + R + +R+ A+V + A+A+A I+ +LP L Sbjct: 1 GDHGLGIATLMRAAQRDIAERQRFSARVSSSLAGARATAAILAALPVLGVLLGQLIGARP 60 Query: 152 MNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 ++ L+ G LL V A G++ +++ Sbjct: 61 LDFLLGGQVGGWLLLVGATLACAGLLWADRIVD 93 >gi|322421239|ref|YP_004200462.1| general secretion pathway protein F [Geobacter sp. M18] gi|320127626|gb|ADW15186.1| general secretion pathway protein F [Geobacter sp. M18] Length = 400 Score = 40.9 bits (94), Expect = 0.079, Method: Composition-based stats. Identities = 25/186 (13%), Positives = 59/186 (31%), Gaps = 24/186 (12%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D A + + + +PV ++VA + ++ ++ RV + G L+++++ Sbjct: 62 DLSLATRRLATLLGSAVPVYESVATLWEQEAPGELKRVLGRVRDRLAEGQGLAQALAAEP 121 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + S + + G L L L+ D+ ++++V + + Sbjct: 122 Q-----VFSESYVGMVAAGEASGALEVVLERLAEFQEDQAEVRSRVITALIYPAIMVVVG 176 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR---------------GHMLLGVAAAFMLIGIMV 178 + + V G LG+AA + G Sbjct: 177 IGVMMVLLGFVVPKISAVFESNKATLPLVTVLLIKASTLVRKGWWALGIAAIAAVAGW-- 234 Query: 179 MRLMIN 184 + M+ Sbjct: 235 -KRMMR 239 >gi|159039935|ref|YP_001539188.1| hypothetical protein Sare_4420 [Salinispora arenicola CNS-205] gi|157918770|gb|ABW00198.1| conserved hypothetical protein [Salinispora arenicola CNS-205] Length = 330 Score = 40.9 bits (94), Expect = 0.080, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 2/146 (1%) Query: 41 VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSE 100 + + GL + ++ P + + + + G L+E Sbjct: 182 AEGLRRRHLDQLCDLAADLRAGLPVGQAAPLPAGGEPGSTLLR--AAVRLADRTGAPLAE 239 Query: 101 ALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 L + R A A + A+A+AW++ +LP L + + VL++ Sbjct: 240 LLDRIDADARAADRGLAAAAAQAAGARATAWLLAALPLGGIGLGFGIGVDPVAVLLHSTA 299 Query: 161 GHMLLGVAAAFMLIGIMVMRLMINFD 186 G L +A + G+ + Sbjct: 300 GVACLLLAVVLQVAGLFWAERLTAIR 325 >gi|315634801|ref|ZP_07890083.1| type IV pilus assembly protein PilC [Aggregatibacter segnis ATCC 33393] gi|315476353|gb|EFU67103.1| type IV pilus assembly protein PilC [Aggregatibacter segnis ATCC 33393] Length = 407 Score = 40.9 bits (94), Expect = 0.082, Method: Composition-based stats. Identities = 19/172 (11%), Positives = 63/172 (36%), Gaps = 6/172 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 + L + ++A +P+ ++ +++ ++ + R ++ GL+ S+++ + Sbjct: 57 NAEICALLSQLATLLQASVPLKHSLQILLQNCTNIALNQWLRLLLRDIERGLAFSQALEQ 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 Y+ QE + ++ G L+ +++ + ++ K+Q + + Sbjct: 117 QGLYLTYQER-----QLIQVGEMTGKLAAVCHEIAQHKQQALALQRKMQKILLYPVLVLG 171 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 I +L + + + L + + L + L++ Sbjct: 172 ISLTLTVLLLLFIVPQFAAMYDNNSAQLPAFTQLLLTLSQGLQNYWLALLIV 223 Score = 37.4 bits (85), Expect = 0.97, Method: Composition-based stats. Identities = 13/137 (9%), Positives = 43/137 (31%), Gaps = 4/137 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR----VIETQHLGLSLSESISR 71 + + ++AG+P++ A+ + + + +I L + Sbjct: 264 LVSFSRSLFLMLQAGIPLNQALQSFLPKQQSWQTKPQLQGDLVLIAEVQSTLHWIQQGYP 323 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + Q + + + G L + L ++ + + + + + + +E Sbjct: 324 FSASVSGQIFPPAAQQMLQVGEQSGQLPKMLQFIANDHQQQLDHQIDLLSQMLEPLLMVI 383 Query: 132 IIGSLPFCVSTLVYFTS 148 I G + + + Sbjct: 384 IGGLIGLIMLGMYLPIF 400 >gi|315186872|gb|EFU20630.1| Type II secretion system F domain [Spirochaeta thermophila DSM 6578] Length = 398 Score = 40.9 bits (94), Expect = 0.085, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 44/146 (30%), Gaps = 7/146 (4%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESI 69 + + + + G+ V +A+ V + +R E R G SL+E + Sbjct: 259 AMKREMFDFCFAMEVLSKGGVSVDEALGVAAESVENAALREEVSRARARVMKGASLAEVL 318 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + + G E A++ R + + V ME S Sbjct: 319 G------GSSLIPAVVRQWVGVGERTGATEEVFAHMRRFFGEELEQEISVLLNLMEPLTS 372 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVL 155 I + V + Y ++L Sbjct: 373 VIIGMFILILVLVFIVPIFTTYGSLL 398 >gi|222478632|ref|YP_002564869.1| hypothetical protein Hlac_0194 [Halorubrum lacusprofundi ATCC 49239] gi|222451534|gb|ACM55799.1| conserved hypothetical protein [Halorubrum lacusprofundi ATCC 49239] Length = 608 Score = 40.9 bits (94), Expect = 0.085, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 47/146 (32%), Gaps = 9/146 (6%) Query: 6 KKR-----TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++R P+A+ +I V G+ V A+A + F R Sbjct: 339 RRRAVLSNVRAVERSLPDAMTVIGGDVAEGVAVETAIANAGERLDGATGELFERAGRRSD 398 Query: 61 -LGLSLSESISRM---VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 L + + E+ +P V +++V + G + L L+ L + + ++ Sbjct: 399 TLRVDVREAFLGRGGPAVPVPSPRVQGAVALLAVAGREGRPAGDVLLELADQLEELRELE 458 Query: 117 AKVQALSMEAKASAWIIGSLPFCVST 142 + + ++ + Sbjct: 459 NDARRQLATVTGTLTNTAAVFAPLVG 484 >gi|296118089|ref|ZP_06836671.1| membrane protein [Corynebacterium ammoniagenes DSM 20306] gi|295968975|gb|EFG82218.1| membrane protein [Corynebacterium ammoniagenes DSM 20306] Length = 208 Score = 40.9 bits (94), Expect = 0.089, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 4/130 (3%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 +++ V VRAGL + A + + + +P + +++V LG+ + M P+ Sbjct: 74 IELFVACVRAGLSIQQATSAVSVVAEEPTVTYWKQVNSLLALGVEPERAWVHM---QPVP 130 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IGSLPF 138 + + ++ + G ++ L LR A +A S + + LP Sbjct: 131 GLQELARLVMMSEHSGAAIASGCQRLVDTLRADATSSAIAKAERAGVFISLPLALCFLPA 190 Query: 139 CVSTLVYFTS 148 + + Sbjct: 191 FIILGLVPVV 200 >gi|226349292|ref|YP_002776406.1| hypothetical membrane protein [Rhodococcus opacus B4] gi|226245207|dbj|BAH55554.1| hypothetical membrane protein [Rhodococcus opacus B4] Length = 299 Score = 40.9 bits (94), Expect = 0.093, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 50/137 (36%), Gaps = 1/137 (0%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESI 69 +F + +D++ R G+ + ++ V + E G + ++ Sbjct: 156 EFAQALSSYIDLVALCRRGGIGTTQSLERAAQVGDSWVFLRLDEELYEAGRSGEAPWNAL 215 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 +R+ + L E+ + ++++ G ++ +L + LR + + A K + Sbjct: 216 TRVSHELGLTELGDLADIMNMTGDKGASVYASLRAKAAGLRSAQASAEQGAAAEATEKLA 275 Query: 130 AWIIGSLPFCVSTLVYF 146 + G + L+ Sbjct: 276 MPLAGLAGLFIMLLLIP 292 >gi|55378590|ref|YP_136440.1| hypothetical protein rrnAC1849 [Haloarcula marismortui ATCC 43049] gi|55231315|gb|AAV46734.1| unknown [Haloarcula marismortui ATCC 43049] Length = 360 Score = 40.9 bits (94), Expect = 0.094, Method: Composition-based stats. Identities = 20/154 (12%), Positives = 49/154 (31%), Gaps = 6/154 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGL 63 ++ R PNAL + R + G V A+ V ++ +HLG Sbjct: 138 VRGRITDIEAGLPNALSAVGRRLDRGQSVEAALVEAVDETPKPTSAVIKAAAARQEHLGT 197 Query: 64 SLSESIS----RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 S+ + + + +T++ + +G ++ + L + ++ + Sbjct: 198 SVEGAFLGPGGALADVPSHRAC-RVATLLDTAAAIGPPAGASVTTMGEHLDALRTIERET 256 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153 + + + +L + G M Sbjct: 257 RRDLSQITETLSNTAALFGPLVGGATVALAGSMG 290 >gi|220929813|ref|YP_002506722.1| type II secretion system protein [Clostridium cellulolyticum H10] gi|220000141|gb|ACL76742.1| type II secretion system protein [Clostridium cellulolyticum H10] Length = 405 Score = 40.9 bits (94), Expect = 0.095, Method: Composition-based stats. Identities = 15/136 (11%), Positives = 42/136 (30%), Gaps = 5/136 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + +++G+ + A+ V+ G ++ + S ++ S+ + + Sbjct: 273 FTRTLSTLLKSGVSLVHALEVVDGVVNNQIVSRGLIKVKE-----SIKMGSNLAAPLEKM 327 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 T + + G+L + ++ + ME + + F Sbjct: 328 GIFPLMVTHMISVGEEAGSLDSIMEKVADFYDEEVETSVSKLVAMMEPLLMMVLAIIVGF 387 Query: 139 CVSTLVYFTSPGYMNV 154 V ++ Y V Sbjct: 388 IVVAMILPIFSMYQGV 403 >gi|254409511|ref|ZP_05023292.1| Bacterial type II secretion system protein F domain [Microcoleus chthonoplastes PCC 7420] gi|196183508|gb|EDX78491.1| Bacterial type II secretion system protein F domain [Microcoleus chthonoplastes PCC 7420] Length = 312 Score = 40.5 bits (93), Expect = 0.096, Method: Composition-based stats. Identities = 11/165 (6%), Positives = 48/165 (29%), Gaps = 15/165 (9%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + + +G+ + ++ ++ + V+ ++V G + ++ Sbjct: 3 NRQNAKIFSQLAKLLNSGINLQQSLTLVGNDLNPAVKRYLQKVSLAVGSGQDFATAL--- 59 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + ++ + ++ G+L + L+ + + + Sbjct: 60 --TCERRYFNRWTISLIRLAEYSGSLPQTCQILAEDAETQARQER------LYGSVKRSA 111 Query: 133 IGSLPFCVSTLVYFTSPGYMNV----LINDPRGHMLLGVAAAFML 173 I ++ + +P + LL ++ Sbjct: 112 IATIWGFLVLTAAIFNPNATGIIKPEFWLRGLAIALLLWVMIVLV 156 >gi|85058440|ref|YP_454142.1| hypothetical protein SG0462 [Sodalis glossinidius str. 'morsitans'] gi|84778960|dbj|BAE73737.1| hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 411 Score = 40.5 bits (93), Expect = 0.096, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 6/113 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISR 71 D + + AGLP+ +++ ++ + R ++ GL+LS + + Sbjct: 161 RRALITLTDRLASLLHAGLPLRESLTLLAAEYPRAGWRCLLAQIGADIERGLTLSRACAA 220 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + P + +L G L A L++ ++ +V + Sbjct: 221 WPQVFPPVW-----CAMFALGELTGRLDSCCAELAQSEARLWRIRQQVMRSLL 268 >gi|91775695|ref|YP_545451.1| type II secretion system protein [Methylobacillus flagellatus KT] gi|91709682|gb|ABE49610.1| type II secretion system protein [Methylobacillus flagellatus KT] Length = 395 Score = 40.5 bits (93), Expect = 0.097, Method: Composition-based stats. Identities = 10/134 (7%), Positives = 34/134 (25%), Gaps = 6/134 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + ++ G+P+ + ++ ++ + + G LS ++ Sbjct: 261 QLARFYRTLGMLLQGGIPLVTGMQMVASLLQPSLKHQLQLAEHDIREGKPLSSAMEEHGM 320 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + G + E + + + +E I Sbjct: 321 TT------SIALRMLRVGERTGRMGEMMERIGSFYDEEIARAVDWFTRLLEPLLMVVIGL 374 Query: 135 SLPFCVSTLVYFTS 148 + V + Sbjct: 375 IIGVVVVLMYMPIF 388 >gi|115376375|ref|ZP_01463612.1| flp pilus assembling protein [Stigmatella aurantiaca DW4/3-1] gi|115366582|gb|EAU65580.1| flp pilus assembling protein [Stigmatella aurantiaca DW4/3-1] Length = 90 Score = 40.5 bits (93), Expect = 0.097, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 53/90 (58%) Query: 98 LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 ++E +S ++R+R ++ K+ AL+ + K WI+ S+P + ++ P M +++ Sbjct: 1 MAEMFETISMVIRERFRLEGKIDALTSQGKLQGWIVASMPAVLGMVLNSMRPDLMEPMMD 60 Query: 158 DPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 G++L+ V A ++GI+++R ++N D+ Sbjct: 61 HMFGYVLVTVIAIMEILGILIIRRIVNIDI 90 >gi|323694362|ref|ZP_08108535.1| hypothetical protein HMPREF9475_03399 [Clostridium symbiosum WAL-14673] gi|323501602|gb|EGB17491.1| hypothetical protein HMPREF9475_03399 [Clostridium symbiosum WAL-14673] Length = 404 Score = 40.5 bits (93), Expect = 0.099, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 51/161 (31%), Gaps = 10/161 (6%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET--- 58 + KKR + + D+ L +V + AGLPV A A IV +R Sbjct: 244 QEAKKKRECQMMMDYSEILSRLVVFLGAGLPVRKAWAKIVEDYRRTEEKAGKRAAYEEMA 303 Query: 59 -----QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 G+ ++ S + + ++ + G + L + Sbjct: 304 AAYYLMQRGVPEIQAYSEFGNRCRVLPYRKLAGILEQNVKNGSKSLTPV--LEAEMEAAF 361 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + E ++ ++ + +V T P ++ Sbjct: 362 EQRKNLARRLGEEASTKLLLPLFMMLLIVMVMITVPAFLAF 402 >gi|257051104|ref|YP_003128937.1| type II secretion system protein [Halorhabdus utahensis DSM 12940] gi|256689867|gb|ACV10204.1| type II secretion system protein [Halorhabdus utahensis DSM 12940] Length = 568 Score = 40.5 bits (93), Expect = 0.100, Method: Composition-based stats. Identities = 21/187 (11%), Positives = 63/187 (33%), Gaps = 12/187 (6%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGL 63 ++ + +AL + R V G V A+ Q + + L L Sbjct: 341 VRTYIRDVESNLTDALYLTGRLVDDGKSVETAIQRAGDQVPAATGELLEQAAGLQRRLHL 400 Query: 64 SLSESISRMV---RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 S+ ++ +P V ++++ ++ G A+ +++ L + ++++A+ + Sbjct: 401 SVHDAFLGEYGVVSDVPSPRVRATVELLAIAAEQGAPAGRAIVSMADHLDELRDVEARTR 460 Query: 121 ALSM--------EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 A ++ ++ + + P + L + A + Sbjct: 461 RQLSTITETIDHTATFFGPMVAGATVGLAGGLSGDGTTAIEGATTLPTDQLGLVIGAYVV 520 Query: 173 LIGIMVM 179 + +++ Sbjct: 521 SLSFILV 527 >gi|90961402|ref|YP_535318.1| ComG operon protein 2 [Lactobacillus salivarius UCC118] gi|90820596|gb|ABD99235.1| ComG operon protein 2 [Lactobacillus salivarius UCC118] Length = 357 Score = 40.5 bits (93), Expect = 0.100, Method: Composition-based stats. Identities = 17/168 (10%), Positives = 60/168 (35%), Gaps = 10/168 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 I+ + AG + ++ I S +V + +G +S+++ Sbjct: 34 FFSILSDLLSAGFSLRQSLISI-QNIMPEFYSVSHKVKKNLLMGTKISDALKE------- 85 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + ++ G + +++ L +L R + K+++L + +++ + Sbjct: 86 NISKSTYYQLLI-AEQHGEMEKSIKQLGSLLERRVEQQNKLKSLMVYPMILFFMLIIIML 144 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVA-AAFMLIGIMVMRLMINF 185 + + T + + V + +L+ ++++ ++ Sbjct: 145 GIKFWLKPTINNFGEDSVKTSSIINWTAVGKYSLILVALIIVLYVLKI 192 >gi|315926213|ref|ZP_07922412.1| type IV pilus assembly protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315620473|gb|EFV00455.1| type IV pilus assembly protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 362 Score = 40.5 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 55/163 (33%), Gaps = 7/163 (4%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + + AG+ + A+ I + + ++ + +V + G L++++ Sbjct: 22 LAIFCGQLGTMLSAGVGILPALRTIAGREHAPHLQDQLHQVAQAIARGHPLADALED--- 78 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 P S F I + G L L NL + +++ + + + + Sbjct: 79 --PAIGASPFLINIIRTGEATGELDRVLFNLETFYSRQSDIRNNLFQIFIYPIFVLCLTV 136 Query: 135 SLPFCVSTLVYFTSPGYMNVLIND-PRGHMLLGVAAAFMLIGI 176 ++ + V + + P G LL + + G+ Sbjct: 137 AVTHYLVRTVMPVLLDSLTSMDRSVPPGSRLLITLSRGLSWGL 179 Score = 37.4 bits (85), Expect = 0.83, Method: Composition-based stats. Identities = 21/164 (12%), Positives = 53/164 (32%), Gaps = 19/164 (11%) Query: 3 HLIKKRTAKFLDDFPN------------ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS 50 + +++R + P D + VR+G+ + A+ ++ + Sbjct: 200 NALRQRLHRLALHLPLIGRLFYLRSMEIFADSLAMMVRSGVALIPALQIVCQNLQNDFLR 259 Query: 51 EF-RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL 109 R G+SL+ES+ R + + + + G+L++ L+ + Sbjct: 260 ARLSRTAALIESGMSLTESLER------IDVLDAEFFQLIQVGESAGSLAQVLSKAAAYY 313 Query: 110 RDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153 + K + +E + + V + + Y Sbjct: 314 HKTYQKRFKRLSAVLEPAVLVIVGVLVAVVVLSFMSILYAIYTG 357 >gi|303241409|ref|ZP_07327912.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2] gi|302591018|gb|EFL60763.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2] Length = 295 Score = 40.5 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 17/154 (11%), Positives = 51/154 (33%), Gaps = 2/154 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +++++ + + P + + +S++A V + + + + E I Sbjct: 142 IVRQKREEIEYELPRFVSNLTQSLKATRDVPAILKSYQKSAGEKFKQEIEVTIADMKS-G 200 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + +++R+ + +S + + + L+ + + K K+ A+ Sbjct: 201 NEETALTRLESRIGSAMLSDVVRGLISVKRGDNGVI-YFEMLNHDFKQLEIQKLKLLAMK 259 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 K + L + + M L N Sbjct: 260 QPGKIKKYSFMMLGCFLLIYLGILGYEIMRALGN 293 >gi|296137197|ref|YP_003644439.1| general secretion pathway protein F [Thiomonas intermedia K12] gi|295797319|gb|ADG32109.1| general secretion pathway protein F [Thiomonas intermedia K12] Length = 404 Score = 40.5 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 56/182 (30%), Gaps = 6/182 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + ++ + + +GLPV + + D R+E ++ Sbjct: 55 RRFARRVFNNQERTL--FTRQLAGLLVSGLPVE---KALAALAEDADRAEIGNLLSNLKS 109 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 +S S+ +E + + G+L + LS L D++ ++ K+ Sbjct: 110 EVSAGHSLGD-ALAQYPREFKPIYRALVSAGEDSGDLGLVMERLSDYLEDQQALRGKLVQ 168 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + ++ + T V G + +A + + + L Sbjct: 169 AFAYPAIVVLVAVTVVVLLLTYVVPQVVGVFQGAHQKLPLLTVGLIAVSDFMRAWGWLIL 228 Query: 182 MI 183 ++ Sbjct: 229 IV 230 Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 13/129 (10%), Positives = 33/129 (25%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ A+ S+ + + + L + + Sbjct: 273 FASTLGILGAAGVPILRALQAAADTLSNSLLKA----DAEEAIALVREGATLAQSLALHK 328 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L + L + +A +E + G + Sbjct: 329 RFPP-VLITFIRLGEQTGTLPQMLDRAAVQHAQEVQRRAMTLTTILEPLLILVMGGMVLL 387 Query: 139 CVSTLVYFT 147 V ++ Sbjct: 388 IVLAVMMPI 396 >gi|57238493|ref|YP_179624.1| general secretory pathway protein F [Campylobacter jejuni RM1221] gi|57167297|gb|AAW36076.1| general secretory pathway protein F [Campylobacter jejuni RM1221] gi|315058924|gb|ADT73253.1| MSHA biogenesis protein MshG [Campylobacter jejuni subsp. jejuni S3] Length = 393 Score = 40.5 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 21/181 (11%), Positives = 56/181 (30%), Gaps = 10/181 (5%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 ++F + GL V +A+ + +++++ L +L+++ Sbjct: 50 QRLKDENFILFFKELALLCEVGLSVQEAIREL---YLMHSCKIMKKILDNLILAQNLNQA 106 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 ++ + ++ G +SE + +S++ + +++ Sbjct: 107 FENA-----NFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPTL 161 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMINFD 186 I + V L H++L + GI + L + F Sbjct: 162 VFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVVFI 221 Query: 187 V 187 V Sbjct: 222 V 222 >gi|320102340|ref|YP_004177931.1| type II secretion system F domain-containing protein [Isosphaera pallida ATCC 43644] gi|319749622|gb|ADV61382.1| Type II secretion system F domain protein [Isosphaera pallida ATCC 43644] Length = 357 Score = 40.5 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 46/128 (35%), Gaps = 3/128 (2%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + GLP A+ + G + + +R++E + E +S ++R Sbjct: 221 FARSLSVLLDGGLPPDQALELTAGTLN---LTGSQRIVEDLRQAVLDGEEMSPVLRIRAE 277 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L EALA +++ + K + ++ + + + F Sbjct: 278 DWWGPELADVVENGEETGQLPEALARQAKVDEHDLEQRVKNLSTLVKPLITIALGLLVLF 337 Query: 139 CVSTLVYF 146 V +V Sbjct: 338 IVLAVVVP 345 >gi|289706182|ref|ZP_06502546.1| type II secretion system F domain protein [Micrococcus luteus SK58] gi|289557094|gb|EFD50421.1| type II secretion system F domain protein [Micrococcus luteus SK58] Length = 375 Score = 40.5 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 37/141 (26%), Gaps = 7/141 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 LD++ + AG + A+ + + + + Sbjct: 241 VLDVLAALLSAGRALPAALDDLGRTLPGAPGLRATAALLLWGRDWDEAWAGLD-----TD 295 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G + LA + +R + + A + + + L Sbjct: 296 PVWIETAARLRPLHRSGMAGARTLAETAAAVRQQTRRADERAAEELAVRLVMPLGLCLLP 355 Query: 139 CVSTLVYFTSPGYMNVLINDP 159 + P M +L P Sbjct: 356 AFVC--WGVVPVVMALLGAGP 374 >gi|302384578|ref|YP_003820400.1| hypothetical protein Closa_0134 [Clostridium saccharolyticum WM1] gi|302195206|gb|ADL02777.1| conserved hypothetical protein [Clostridium saccharolyticum WM1] Length = 420 Score = 40.5 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 52/162 (32%), Gaps = 11/162 (6%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI----------VGQSSDPVRSE 51 K+ + R + L D+ + +V + AGL V A I +S P E Sbjct: 259 KNQARVRERQLLFDYSEVVSKLVVYMGAGLTVRGAWERITAGYKDGVKQGKRSVRPAYEE 318 Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILR 110 + GLS ++ S R +Q S ++ Q L AL Sbjct: 319 MVKTAAQLGSGLSEGKAYSEFGRRCGVQVYIKLSALLEQSQKNGSRQLRPALELEMVSAF 378 Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 +++ AK K ++ L + +V + Sbjct: 379 EQRKNLAKKLGEEAGTKLLLPLLMMLGVVMVMIVVPAFLSFY 420 >gi|294341495|emb|CAZ89912.1| Putative General secretion pathway protein F [Thiomonas sp. 3As] Length = 404 Score = 40.5 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 23/182 (12%), Positives = 56/182 (30%), Gaps = 6/182 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + ++ + + +GLPV + + D R+E ++ Sbjct: 55 RRFARRVFNNQERTL--FTRQLAGLLVSGLPVE---KALAALAEDADRAEIGNLLSNLKS 109 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 +S S+ +E + + G+L + LS L D++ ++ K+ Sbjct: 110 EVSAGHSLGD-ALAQYPREFKPIYRALVSAGEDSGDLGLVMERLSDYLEDQQALRGKLVQ 168 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + ++ + T V G L +A + + + L Sbjct: 169 AFAYPAIVVLVAVTVVVLLLTYVVPQVVGVFQGAHQKLPLLTLGLIAVSDFMRAWGWLIL 228 Query: 182 MI 183 ++ Sbjct: 229 IV 230 Score = 36.3 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 13/129 (10%), Positives = 33/129 (25%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG+P+ A+ S+ + + + L + + Sbjct: 273 FASTLGILGAAGVPILRALQAAADTLSNSLLKA----DAEEAIALVREGATLAQSLALHK 328 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + G L + L + +A +E + G + Sbjct: 329 RFPP-VLITFIRLGEQTGTLPQMLDRAAVQHAQEVQRRAMTLTTILEPLLILVMGGMVLL 387 Query: 139 CVSTLVYFT 147 V ++ Sbjct: 388 IVLAVMMPI 396 >gi|289675690|ref|ZP_06496580.1| type II secretion system protein [Pseudomonas syringae pv. syringae FF5] Length = 184 Score = 40.5 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 34/76 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + R + + P LD VRS+++G ++DAV + + P++ R+ Sbjct: 109 VSWRYEVRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQ 168 Query: 61 LGLSLSESISRMVRYM 76 LG+SL ++ Sbjct: 169 LGVSLPDAARDFAELY 184 >gi|227828862|ref|YP_002830642.1| type II secretion system protein [Sulfolobus islandicus M.14.25] gi|227460658|gb|ACP39344.1| type II secretion system protein [Sulfolobus islandicus M.14.25] Length = 658 Score = 40.5 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 52/177 (29%), Gaps = 3/177 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + + P L I + G +S A+ + R EF RV++ S+ Sbjct: 428 REINDIENSLPQFLRDITEFRKIGYDLSRAIKTLA--GEKKYRREFNRVLDEIVKQDSMG 485 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 I+R F T + + + G + L L+ + K + + Sbjct: 486 IPITRAKINTRSWLGKFSLTTVQILIEGGAVRPDLLEYLTEFTLNFIQSKREAFSRMRAY 545 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV-LINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + L + + V L + G ++ ++ M Sbjct: 546 QVLGILTPILLIVTILIAIVIISSFTVVTLPANTLGIPQFPNIITQFILSSFILAEM 602 Score = 35.1 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 23/175 (13%), Positives = 58/175 (33%), Gaps = 5/175 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60 K ++ D+ P + +I +G + + + IV ++ E +I Sbjct: 193 KSRAREVRDSIQDEIPFFVTLITIINASGTTIYEGMRKIVQFPLFKAMKKEALLIIRDID 252 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 S +++ R ++ S+F + + GG++ L +R + + + Sbjct: 253 FFGKSPLDALEHRARLTFNRDYSWFLAGYTSIIRSGGDIEAYLFQKAREFLNWLQFRWRF 312 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + +I L F + +V + N + + + +I Sbjct: 313 YSERTSFLGELIVILFLIFPMFLIVLAF---FTNGAVISFLLVIPILFGTILYII 364 >gi|326204947|ref|ZP_08194799.1| Type II secretion system F domain [Clostridium papyrosolvens DSM 2782] gi|325984876|gb|EGD45720.1| Type II secretion system F domain [Clostridium papyrosolvens DSM 2782] Length = 405 Score = 40.5 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 15/136 (11%), Positives = 42/136 (30%), Gaps = 5/136 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + +++G+ + A+ V+ G ++ + S ++ S+ + + Sbjct: 273 FTRTLSTLLKSGVSLIHALEVVDGVVNNQIVSRGLIKVKE-----SIKMGSNLAAPLEKM 327 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 T + + G+L + ++ + ME + + F Sbjct: 328 GIFPLMVTHMISVGEEAGSLDSIMEKVADFYDEEVETSVSKLVAMMEPLLMMVLAIIVGF 387 Query: 139 CVSTLVYFTSPGYMNV 154 V ++ Y V Sbjct: 388 IVVAMILPIFSMYQGV 403 >gi|119716452|ref|YP_923417.1| type II secretion system protein [Nocardioides sp. JS614] gi|119537113|gb|ABL81730.1| type II secretion system protein [Nocardioides sp. JS614] Length = 303 Score = 40.5 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 18/142 (12%), Positives = 46/142 (32%), Gaps = 2/142 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGL 63 KK +F +D++ VR G A+ V + +++ Sbjct: 154 AKKARIEFSRALGAYIDMVATGVRDGSSGQQALRSAAEVGDKWVFKRIESELRRARYMTR 213 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + +S+ + + + E+ + ++ Q G + L + L + A+V + Sbjct: 214 APWDSLHGLADELAVPELDDLADIMQQSGQDGAQIYNNLRARAAAL-RSAMLSAEVGKAN 272 Query: 124 MEAKASAWIIGSLPFCVSTLVY 145 ++ L ++ Sbjct: 273 ATSERMYIPASLLGIVFMAILV 294 >gi|261402229|ref|YP_003246453.1| Type II secretion system F domain protein [Methanocaldococcus vulcanius M7] gi|261369222|gb|ACX71971.1| Type II secretion system F domain protein [Methanocaldococcus vulcanius M7] Length = 559 Score = 40.5 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 57/160 (35%), Gaps = 2/160 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRA-GLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 + ++R + FP L + SV A G + ++ + P+ ++ +R+ + Sbjct: 317 ISLREEERVKRKEFVFPEFLRSLGDSVSAKGGGMVSSLEYLSNHDFGPLTNDIKRLYKRL 376 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 LG+ ++S + FS + S GG+ A +S+ R ++ K Sbjct: 377 ALGIDSNKSWRFFGFDSCSYLIQLFSDIFSRCIYFGGDPKTAAEIISKNFRKIVQLR-KS 435 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159 + +++ ++ +N L + Sbjct: 436 KYQNIQQFVGVVYGLGGGLSLALFASLGVAKMINDLYSSL 475 >gi|292655372|ref|YP_003535269.1| flagella biogenesis protein FlaJ [Haloferax volcanii DS2] gi|291370948|gb|ADE03175.1| flagella biogenesis protein FlaJ (probable flagellin secretion system protein FlaJ) [Haloferax volcanii DS2] Length = 580 Score = 40.5 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 18/183 (9%), Positives = 58/183 (31%), Gaps = 3/183 (1%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIET-Q 59 + L+++ + + + + + + + +E R+++ Sbjct: 83 RLLVEQTRRSLENQLHLLITHMTVLSTTNIDRVAVFRTLAREEEYGELATEMNRIVQLVD 142 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 SL ++ R R +P + ++ F ++ G ++ + L + + + Sbjct: 143 AWNQSLDDACQRRAREVPSKPLADFLDRLAYSINAGQSIDDFLLGEQNAMIQKYITVYES 202 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++E ++ L + + P G +++ + V+ Sbjct: 203 ALGNLEVMKDLYLSMILSMTFAIINAIVLPILTGTDATMTIGAVIVLFVFVQLGF-YFVI 261 Query: 180 RLM 182 R M Sbjct: 262 RTM 264 >gi|296123622|ref|YP_003631400.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] gi|296015962|gb|ADG69201.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] Length = 362 Score = 40.5 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 41/124 (33%), Gaps = 5/124 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + +RAG+P+ + SS + R+ E G +L +I+ + Sbjct: 21 LALLIRAGIPLEIGFQQLGRGSSSDLARLAERIGERLQQGQALDLAIASENTPE-----A 75 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 I G L E L +++ + ++ + +++ + L ++ Sbjct: 76 RLYATIVQLGIRSGRLPEMLESMAHLGDQMSAVREEFHRVAIYPTIVVVLTYLLICGLAI 135 Query: 143 LVYF 146 Sbjct: 136 WFIP 139 >gi|16081952|ref|NP_394362.1| hypothetical protein Ta0903 [Thermoplasma acidophilum DSM 1728] gi|10640180|emb|CAC12032.1| hypothetical membrane protein [Thermoplasma acidophilum] Length = 238 Score = 40.5 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 18/163 (11%), Positives = 51/163 (31%), Gaps = 9/163 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P+ + + GL + + +I + P++ E + + G ++ E + + Sbjct: 48 QVPSLVRDLSGYSSYGLSLYSVLRMIKNEDLGPIKEEVDKAMAMMKNGNTIEEVSQYLQK 107 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + G E L LS + +R V + ++ Sbjct: 108 NSSPD--LALVSAVLKNADNTGRAGETLQFLSTYMNERSTNHKNVTQ-----TSENYVGL 160 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + ++ + + M+L + M+ + Sbjct: 161 VIGSFLIFVLVMVVVDFY--FLKSNGHAMVLLSSVIMMVQSYV 201 >gi|300214267|gb|ADJ78683.1| ComG operon protein 2 [Lactobacillus salivarius CECT 5713] Length = 333 Score = 40.5 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 17/168 (10%), Positives = 60/168 (35%), Gaps = 10/168 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 I+ + AG + ++ I S +V + +G +S+++ Sbjct: 10 FFSILSDLLSAGFSLRQSLISI-QNIMPEFYSVSHKVKKNLLMGTKISDALKE------- 61 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + ++ G + +++ L +L R + K+++L + +++ + Sbjct: 62 NISKSTYYQLLI-AEQHGEMEKSIKQLGSLLERRVEQQNKLKSLMVYPMILFFMLIIIML 120 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVA-AAFMLIGIMVMRLMINF 185 + + T + + V + +L+ ++++ ++ Sbjct: 121 GIKFWLKPTINNFGEDSVKTSSIINWTAVGKYSLILVALIIVLYVLKI 168 >gi|224418844|ref|ZP_03656850.1| transcription regulator AsnC [Helicobacter canadensis MIT 98-5491] gi|253828167|ref|ZP_04871052.1| secretion system protein [Helicobacter canadensis MIT 98-5491] gi|313142362|ref|ZP_07804555.1| predicted protein [Helicobacter canadensis MIT 98-5491] gi|253511573|gb|EES90232.1| secretion system protein [Helicobacter canadensis MIT 98-5491] gi|313131393|gb|EFR49010.1| predicted protein [Helicobacter canadensis MIT 98-5491] Length = 398 Score = 40.5 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 20/181 (11%), Positives = 53/181 (29%), Gaps = 18/181 (9%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + NA + ++A LP+ D + I + + + + Sbjct: 59 KEISNAFYQLKFGLKANLPLKDLLESIQKYAKNNYLKMQFLKVSNSLHQG------KELA 112 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S F + Q G L E++ + L++R+ ++ + ++ Sbjct: 113 DCFKDAGFSDFICAMIGIGQKSGRLVESVEFILLDLQNRQKNHKLLRKILFYPLFMVCVM 172 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR-------GHMLLG-----VAAAFMLIGIMVMRL 181 + ++ V L +L + ++G+ ++R Sbjct: 173 VLVFLGITLFVLPQFESLFASLDTSLPLASQSLLFMRVLVLNYGILIVGASILGLWLLRK 232 Query: 182 M 182 + Sbjct: 233 L 233 >gi|296394989|ref|YP_003659873.1| type II secretion system F domain-containing protein [Segniliparus rotundus DSM 44985] gi|296182136|gb|ADG99042.1| Type II secretion system F domain protein [Segniliparus rotundus DSM 44985] Length = 192 Score = 40.5 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 9/158 (5%) Query: 5 IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +RTA+ + D++ S+RAGLP S A+ + + +P+ + LG Sbjct: 38 ASRRTARLDQLGLAASYDLLAVSLRAGLPTSVAMRAVAQSAPEPLAGALAKAASLLALGA 97 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA-- 121 + + + + + ++ G L+E L L+ R +A +A Sbjct: 98 GPRTAWEEAAAL---EVTAPLARMAIRSARSGTALAEGLGELASGARAEALDQAAAEASR 154 Query: 122 ---LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 L ++ V ++ G M Sbjct: 155 AAVLLAGPLGLCFLPAFFCLGVMPVIVGLGSGVMRDAW 192 >gi|213966025|ref|ZP_03394214.1| bacterial type II secretion system protein F domain protein [Corynebacterium amycolatum SK46] gi|213951320|gb|EEB62713.1| bacterial type II secretion system protein F domain protein [Corynebacterium amycolatum SK46] Length = 290 Score = 40.5 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 65/185 (35%), Gaps = 4/185 (2%) Query: 1 MKHLIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 ++ + ++R + D AL+ + +RAG S A+ + + + + Sbjct: 103 VRAVGERRCERREADSAAVALETLTAQLRAGAAASR--ALNAAAAEVRRAEDMTVLADHL 160 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + +++ + +V Q G +L+ L L+ R+ +++ Sbjct: 161 AHAAHRANFADPWETEESSEQLRRIGRMWTVAQQHGLSLAGLLDCARGDLQARQAHRSQT 220 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A + + I+ SLP + L + G ++L + + GI Sbjct: 221 SAALAGPRMTIAILASLPVFGLIMGQAFGASPFEFL-SRGIGGIVLVIGVGLVCAGIEWA 279 Query: 180 RLMIN 184 +I+ Sbjct: 280 VAIID 284 >gi|12247886|gb|AAG50079.1|AF333250_12 FlaJ [Methanothermococcus thermolithotrophicus] Length = 559 Score = 40.5 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 57/164 (34%), Gaps = 2/164 (1%) Query: 13 LDDFPNALDIIVRSVRA-GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 +FP+ L + SV A G +++++ + P+ + R+ + + + +++ Sbjct: 329 EYNFPDFLRSLGNSVSAKGGGMTESLKYLSSHDFGPLTKDLERLYKRISIRIDNNKAWRY 388 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + FS + + LGG+ +A + R N++ K + S+ + Sbjct: 389 FGFDTCSYLIQLFSEMFERCTFLGGDPGKASEIIGTNFRKIINLR-KSKYQSVAQFSGII 447 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 +S + ++ L + M G Sbjct: 448 YGLGGGMALSLYASYGVAQMVSNLYTTLDIPEAMISVINIMSPG 491 >gi|294635024|ref|ZP_06713541.1| protein transport protein HofC [Edwardsiella tarda ATCC 23685] gi|291091623|gb|EFE24184.1| protein transport protein HofC [Edwardsiella tarda ATCC 23685] Length = 399 Score = 40.5 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 54/160 (33%), Gaps = 8/160 (5%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + + + AGL ++ +A++ G ++ R++ + GLS S+++ Sbjct: 62 DFIAQLAELLDAGLALAPVLALMAGGHPYPEWQALIRQLHQAITTGLSFSQALHEHGTIF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 P + G L+ L+R RD +++ ++ + S+ Sbjct: 122 PPLYARTLVAA-----EQSGELAAVCRQLARQQRDALDLRQRLLRALRYPLFLLTVALSI 176 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHM--LLGVAAAFMLI 174 + + L LL +AA I Sbjct: 177 TLAMLFTLLPQFALLYASLDAPLPWLTQRLLALAAGLRSI 216 >gi|325577721|ref|ZP_08147996.1| type IV pilus assembly protein PilC [Haemophilus parainfluenzae ATCC 33392] gi|325160466|gb|EGC72592.1| type IV pilus assembly protein PilC [Haemophilus parainfluenzae ATCC 33392] Length = 407 Score = 40.5 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 59/162 (36%), Gaps = 9/162 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 + L+ + + + +P+ +A+ ++ + + +IE G+S S+S+ Sbjct: 57 NAEISALLNQLATLLSSAIPLKNALHILQDNCTQLGLHQWLGALIELIESGISFSQSLEI 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 +Y+ QE + ++ G L+E ++ ++ K+Q + + Sbjct: 117 QGKYLNFQE-----IQLIQVGEMTGKLAEVCTKIAERRTQSLTLQRKLQKIMLYPA---M 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 ++G L+ F P + + + L M Sbjct: 169 VLGISLSLTLILLLFVVPQFAEMYGENSAELPTLTAVLLAMS 210 >gi|301154754|emb|CBW14217.1| unnamed protein product [Haemophilus parainfluenzae T3T1] Length = 407 Score = 40.5 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 58/162 (35%), Gaps = 9/162 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 + L+ + + + +P+ +A+ ++ + + +IE GL S+S+ Sbjct: 57 NAEISALLNQLATLLSSAIPLKNALHILQDNCTQLGLHQWLGALIELIESGLPFSQSLEI 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 +Y+ QE + ++ G L+E ++ ++ K+Q + + Sbjct: 117 QGKYLNFQE-----IQLIQVGEMTGKLAEVCTKIAERRTQSLTLQRKLQKIMLYPA---M 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 ++G L+ F P + + + L M Sbjct: 169 VLGISLSLTLILLLFVVPQFAEMYGENSAELPTLTAVLLAMS 210 >gi|16331160|ref|NP_441888.1| pilin biogenesis protein [Synechocystis sp. PCC 6803] gi|1653654|dbj|BAA18566.1| pilin biogenesis protein [Synechocystis sp. PCC 6803] Length = 298 Score = 40.1 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 13/134 (9%), Positives = 40/134 (29%), Gaps = 7/134 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + R+G+P+ ++ ++ + + I G +S ++ + Sbjct: 167 FCRVFGTLTRSGVPIIQSLEIVCNTVPNKVISDAIAGAISEIQQGGMMSLALQQ------ 220 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + + G L + ++ D K +E I G + Sbjct: 221 SKVFPSLAIQMISIGEETGELDAMMMKVADFYEDEVEQTVKALTSIIEPAMMVLIAGMVG 280 Query: 138 FCVSTLVYFTSPGY 151 + ++ + Sbjct: 281 TILLSMYLPMFAIF 294 >gi|121612272|ref|YP_001001119.1| general secretory pathway protein F [Campylobacter jejuni subsp. jejuni 81-176] gi|167006012|ref|ZP_02271770.1| general secretory pathway protein F [Campylobacter jejuni subsp. jejuni 81-176] gi|32765531|gb|AAP87275.1| CtsF [Campylobacter jejuni subsp. jejuni 81-176] gi|87249843|gb|EAQ72802.1| general secretory pathway protein F [Campylobacter jejuni subsp. jejuni 81-176] Length = 392 Score = 40.1 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 21/181 (11%), Positives = 56/181 (30%), Gaps = 10/181 (5%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 ++F + GL V +A+ + +++++ L +L+++ Sbjct: 50 QRLKDENFILFFKELALLCEVGLSVQEAIREL---YFMHSCKIMKKILDNLILAQNLNQA 106 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 ++ + ++ G +SE + +S++ + +++ Sbjct: 107 FENA-----NFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPTL 161 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMINFD 186 I + V L H++L + GI + L + F Sbjct: 162 VFLSIIGAFLFLMLFVVPNFKDLFENLGVSLPFITHVMLEIYNFLDDYGIFCIFLFVIFI 221 Query: 187 V 187 V Sbjct: 222 V 222 >gi|307244466|ref|ZP_07526575.1| type II secretion system F domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492159|gb|EFM64203.1| type II secretion system F domain protein [Peptostreptococcus stomatis DSM 17678] Length = 351 Score = 40.1 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 22/160 (13%), Positives = 49/160 (30%), Gaps = 8/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 MK L++K+ + I ++G + I+ SS V V Sbjct: 1 MKILLQKKIR--DKELKLICQQIASMEKSGCDLMTIFDTIINTSSKKVSGVMAMVKRNIE 58 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +++E+ S F + ++ GN+ ++ +K K+ Sbjct: 59 RGRTMTEAFYL------TNAFSVFFISMIRAGEVSGNIDFVFEKMTAYYDREYRLKNKLI 112 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 A ++ ++ + V V ++ Sbjct: 113 AAAIYPMILVFVTLLCLVFMLVFVVPNFESAFAVDMDQLP 152 Score = 34.3 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 9/131 (6%), Positives = 38/131 (29%), Gaps = 5/131 (3%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 N + + +G+ + +++ + + +++ + P Sbjct: 218 NFSRAMAILLGSGIHIGESIDITTRLLDNSYIERKMKMVGDHIKKGKSVTRSLELSGIFP 277 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + GN ++L S +++ + +E + + Sbjct: 278 Q-----VFISMLMSGEESGNFDKSLEMASSYYEKELDLELENLVKIVEPALILLMGLIIG 332 Query: 138 FCVSTLVYFTS 148 C+ ++ Sbjct: 333 GCLYAILSPMF 343 >gi|323486497|ref|ZP_08091820.1| hypothetical protein HMPREF9474_03571 [Clostridium symbiosum WAL-14163] gi|323400200|gb|EGA92575.1| hypothetical protein HMPREF9474_03571 [Clostridium symbiosum WAL-14163] Length = 404 Score = 40.1 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 51/161 (31%), Gaps = 10/161 (6%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET--- 58 + KKR + + D+ L +V + AGLPV A A IV +R Sbjct: 244 QEAKKKRECQMMMDYSEILSRLVVFLGAGLPVRKAWAKIVKDYRRTEEKAGKRAAYEEMA 303 Query: 59 -----QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 G+ ++ S + + ++ + G + L + Sbjct: 304 AAYYLMQRGVPEIQAYSEFGNRCRVLPYRKLAGILEQNVKNGSKSLTPV--LEAEMEAAF 361 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + E ++ ++ + +V T P ++ Sbjct: 362 EQRKNLARRLGEEASTKLLLPLFMMLLIVMVMITVPAFLAF 402 >gi|271502027|ref|YP_003335053.1| Type II secretion system F domain-containing protein [Dickeya dadantii Ech586] gi|270345582|gb|ACZ78347.1| Type II secretion system F domain protein [Dickeya dadantii Ech586] Length = 401 Score = 40.1 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 49/157 (31%), Gaps = 6/157 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMV 73 + + ++AGLP+ DA+ ++ Q R + + G LSE +S Sbjct: 60 QLSIIVRQLSTLLQAGLPLLDALELLGRQHEKAGWRCLLQDIRLQVSQGRPLSEVLSEYP 119 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 P+ + +L G L E A L+ ++ + V + Sbjct: 120 TIFPV-----MCRSLVAVGELTGKLDECCARLADYQEMQRQLTGTVIKALRYPIFVVAVG 174 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + + TLV + +A + Sbjct: 175 LLVTLLMLTLVLPEFAELYASFGAPLPWLTRMMLALS 211 >gi|222478656|ref|YP_002564893.1| type II secretion system protein [Halorubrum lacusprofundi ATCC 49239] gi|222451558|gb|ACM55823.1| type II secretion system protein [Halorubrum lacusprofundi ATCC 49239] Length = 664 Score = 40.1 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 58/188 (30%), Gaps = 14/188 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGL-PVSDAVA-VIVGQSSDPVRSEFRRVIET 58 ++ L R P A+ + + AG V + + R+ + Sbjct: 149 LRWLTATRRTDIERTLPPAVRYL-ELLAAGSDGPRKMVEKAAANDAYGGTATSLRKALNA 207 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFS------TVISVQSQLGGNLSEALANLSRILRDR 112 L SL E + R+ R P +E+ + + L L L+ Sbjct: 208 ARLAGSLDEGLRRVARDTPSRELLAPFLLKFRKHAATGDAALAEYLRTESRMLAHRQDRA 267 Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG----HMLLGVA 168 + + L E ++ +L +T + P + + + P G ++ Sbjct: 268 RKRARRFLELLTELFVVVLVLPALLVIAATALTVVVPELLPPV-DTPVGVVPTRAVVLYG 326 Query: 169 AAFMLIGI 176 A L+ I Sbjct: 327 AVVFLVAI 334 >gi|220913900|ref|YP_002489209.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] gi|219860778|gb|ACL41120.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] Length = 200 Score = 40.1 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 40/128 (31%), Gaps = 2/128 (1%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L+++ + AG + A+ ++ +S R V+ +G + + Sbjct: 64 MLELVAAMLDAGSSIGRALELVSMSASARYSESLRPVVSALAIGADWETAWRSSA--VRQ 121 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G S L + LR + A+ +A S+ K + Sbjct: 122 PGILELRDALGFAALTGAPSSAILYAQAARLRRERFRAAEKRAASLGVKLVIPLGLCSLP 181 Query: 139 CVSTLVYF 146 L Sbjct: 182 AFICLGVV 189 >gi|159041008|ref|YP_001540260.1| type II secretion system protein [Caldivirga maquilingensis IC-167] gi|157919843|gb|ABW01270.1| type II secretion system protein [Caldivirga maquilingensis IC-167] Length = 271 Score = 40.1 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 73/180 (40%), Gaps = 1/180 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLG 62 +++ R KF L ++ + +G P+ + + + V EFRR++ + G Sbjct: 87 MLRSRARKFEKSMTTILLTMIPLMASGEPLVNVFNYLALIKIEPEVNEEFRRLVSEAYSG 146 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + +I R + +P + + +++ + G++++ LA + R+ K + Sbjct: 147 FDIVSAIKRSIERVPSRVYNDVMSILVESYGVSGSIADVLALKLDSIIRREQSTFKSRTQ 206 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 ++ +++ + + ++ S + + +P +LL IG + +M Sbjct: 207 ALSLMMEVYVVSAQLLPILLIILTISLAPLGSVPINPEALILLMFLIYVPAIGSVFYIIM 266 >gi|77454610|ref|YP_345478.1| hypothetical protein pREL1_0043 [Rhodococcus erythropolis PR4] gi|77019610|dbj|BAE45986.1| conserved hypothetical membrane protein [Rhodococcus erythropolis PR4] Length = 299 Score = 40.1 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 18/139 (12%), Positives = 54/139 (38%), Gaps = 1/139 (0%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESI 69 +F + +D++ R G+ + ++ + V + E G + ++ Sbjct: 156 EFAQALSSYIDLVALCRRGGIGSTQSLEIAAQVGDSWVFLRLDEELYEAGRSGEAPWSAL 215 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 +R+ + + L E+ + ++++ G ++ +L + LR + + A+ K + Sbjct: 216 TRVSQQLGLAELGDLADIMTMTGDKGASVYTSLRAKAASLRSAQTSAEQSAAVEATEKLA 275 Query: 130 AWIIGSLPFCVSTLVYFTS 148 + G ++ L+ Sbjct: 276 MPLAGLAGLFMALLLIPAV 294 >gi|238927928|ref|ZP_04659688.1| general secretion pathway protein F [Selenomonas flueggei ATCC 43531] gi|238884261|gb|EEQ47899.1| general secretion pathway protein F [Selenomonas flueggei ATCC 43531] Length = 402 Score = 40.1 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 18/155 (11%), Positives = 41/155 (26%), Gaps = 4/155 (2%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L + + G+PV A+ ++ R + + M Sbjct: 68 FLQELSVLLAVGIPVHCALERLLAGEHGTSMGRVIRTLHRAVMHG----MSLSQAMSMQR 123 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 Q S + + G L L + L + + V++ + + Sbjct: 124 QVFSSVLVGMVRAGEESGALDVVLRAAASFLTEVHRTREAVRSALLYPCFLLAATLLVLA 183 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 ++ V + L L +A + + Sbjct: 184 LMTVFVLPIFAVLLADLHTALPLPTRLLLAVSAQM 218 >gi|238621054|ref|YP_002915880.1| type II secretion system protein [Sulfolobus islandicus M.16.4] gi|238382124|gb|ACR43212.1| type II secretion system protein [Sulfolobus islandicus M.16.4] Length = 658 Score = 40.1 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 52/177 (29%), Gaps = 3/177 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + + P L I + G +S A+ + R EF RV++ S+ Sbjct: 428 REINDIENSLPQFLRDITEFRKIGYDLSRAIKTLA--GEKKYRREFNRVLDEIVKQDSMG 485 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 I+R F T + + + G + L L+ + K + + Sbjct: 486 IPITRAKINTRSWLGKFSLTTVQILIEGGAVRPDLLEYLTEFTLNFIQSKREAFSRMRAY 545 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV-LINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + L + + V L + G ++ ++ M Sbjct: 546 QVLGILTPILLIATILIAIVIISSFTVVTLPANTLGIPQFPNIITQFILSSFILAEM 602 Score = 35.1 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 23/175 (13%), Positives = 58/175 (33%), Gaps = 5/175 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60 K ++ D+ P + +I +G + + + IV ++ E +I Sbjct: 193 KSRAREVRDSIQDEIPFFVTLITIINASGTTIYEGMRKIVQFPLFKAMKKEALLIIRDID 252 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 S +++ R ++ S+F + + GG++ L +R + + + Sbjct: 253 FFGKSPLDALEHRARLTFNRDYSWFLAGYTSIIRSGGDIEAYLFQKAREFLNWLQFRWRF 312 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + +I L F + +V + N + + + +I Sbjct: 313 YSERTSFLGELIVILFLIFPMFLIVLAF---FTNGAVISFLLVIPILFGTILYII 364 >gi|210629926|ref|ZP_03296173.1| hypothetical protein COLSTE_00056 [Collinsella stercoris DSM 13279] gi|210160743|gb|EEA91714.1| hypothetical protein COLSTE_00056 [Collinsella stercoris DSM 13279] Length = 218 Score = 40.1 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 1/126 (0%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS-LSESISRMV 73 + +DI+ + AGL A+ + S P+ R + GLS + + + Sbjct: 77 EVSEMVDIVRLGLSAGLSFDAALELYCDGRSGPLAVRLARAHVSWQSGLSTREDELRLVA 136 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R ++ + F+ +S +LG L+E L R +R + + + K Sbjct: 137 RETGVRALETFAIAVSQALELGAPLAETLEGQGREMRAAHRAEVERRIERAPVKLIIPTG 196 Query: 134 GSLPFC 139 + Sbjct: 197 TLILPA 202 >gi|283797137|ref|ZP_06346290.1| hypothetical protein CLOM621_07103 [Clostridium sp. M62/1] gi|291075553|gb|EFE12917.1| hypothetical protein CLOM621_07103 [Clostridium sp. M62/1] Length = 463 Score = 40.1 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 46/134 (34%), Gaps = 12/134 (8%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV----------RSE 51 + KKR + L D+ + + + + AGLPV A + + + + E Sbjct: 301 REEQKKRNRELLFDYSDIVSGLCVYLNAGLPVRKAWERLAEEYREGLELPGSRRRAGYEE 360 Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111 + + G+ ++ R L+ + +++ + G L +L + Sbjct: 361 IAASVSAMNQGMPELKAYGEFGRSCGLRSYRKLAGLMTQYVKNGSG--SLLKSLEEEMES 418 Query: 112 RKNMKAKVQALSME 125 + + + E Sbjct: 419 AFEERKEAARRAGE 432 >gi|266621095|ref|ZP_06114030.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479] gi|288867251|gb|EFC99549.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479] Length = 411 Score = 39.7 bits (91), Expect = 0.16, Method: Composition-based stats. Identities = 19/163 (11%), Positives = 50/163 (30%), Gaps = 12/163 (7%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR----------SE 51 +++ K+R L D+ + + + AG+ + A I V+ E Sbjct: 250 QNVKKQREQLLLLDYSEIVSKFMVFISAGMTIRTAWERIAAGYEKTVQTGNRKARPAYEE 309 Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111 I G++ + R LQ + ++ + G ++ L + Sbjct: 310 MCHTISQLKSGMAEGRAYGEFGRRCGLQPYVKLAALLEQNRKTGSKNLKSALEL--EMVS 367 Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + E + ++ ++ P ++ + Sbjct: 368 AFEQRKNLAKKLGEEAGTKLLLPLFLMLGVVMIMIVVPAFLAI 410 >gi|283779989|ref|YP_003370744.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283438442|gb|ADB16884.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 342 Score = 39.7 bits (91), Expect = 0.17, Method: Composition-based stats. Identities = 15/166 (9%), Positives = 41/166 (24%), Gaps = 12/166 (7%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + + ++G+ + + Q ++ ++ G L+ ++ Sbjct: 6 TRRLVELCHRVATATKSGVDIRRIWEIESRQGPAAQQAAASEILRRISGGDPLAVAMR-- 63 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + ++ + G L E L L M+ I Sbjct: 64 ----DTRFFPPLVVEMTDVGERTGKLDEVLFRLGEHYDHGLKMRQTFLIGIAWPVLELAI 119 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + V + + G +LG+ ++ Sbjct: 120 SVLVIGGVIYITGVINDQP------GAPGVDILGLGLTGASGALIW 159 >gi|147920584|ref|YP_685619.1| hypothetical protein RCIX950 [uncultured methanogenic archaeon RC-I] gi|110621015|emb|CAJ36293.1| conserved hypothetical protein [uncultured methanogenic archaeon RC-I] Length = 630 Score = 39.7 bits (91), Expect = 0.17, Method: Composition-based stats. Identities = 19/165 (11%), Positives = 50/165 (30%), Gaps = 7/165 (4%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-------RSEFRRV 55 LI+ R +F ++L ++ R + G +A A + + R Sbjct: 375 KLIRDRIVAMEGEFADSLFVLGRRISEGRSPEEAFAYTARIVTGTTIGKAYARAAYNIRC 434 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + T L + + + ++ G ++ L+ L++ + + Sbjct: 435 LRTTLSEAVLDPDYGAFSDVYSDRIRATINMLVETSGMSGEVAGTSVIVLADHLKELQAI 494 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 + +V+ + + V G + +I + Sbjct: 495 EQEVRKMLFTMTSMLRTTCIAFAPFIGGVTLALSGAVTAVIAETA 539 >gi|83589193|ref|YP_429202.1| hypothetical protein Moth_0325 [Moorella thermoacetica ATCC 39073] gi|83572107|gb|ABC18659.1| hypothetical protein Moth_0325 [Moorella thermoacetica ATCC 39073] Length = 261 Score = 39.7 bits (91), Expect = 0.17, Method: Composition-based stats. Identities = 19/184 (10%), Positives = 56/184 (30%), Gaps = 8/184 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV--IET 58 MK +R + + + A L + + + + P+ E + Sbjct: 74 MKMRENRRKERLRQVAKDIIVAAGGMFSANLMTGEVIKTLAERIPAPLGRELADIKARRE 133 Query: 59 QHLGLSLSESISRMVRYMPLQEVS--FFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 + + + ++ + L E+ + ++ ++ L L LR R + Sbjct: 134 LNSYNTYPQLLNGLAEKYDLMEIKAMAAVLAAAERAGGPAAAAKGLKRLGAALRLRDRLI 193 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + + + E + + + + +L+ +A +G+ Sbjct: 194 QERKVATYE----SRLAAVVVIMILAAGLLFDATAWREAYTGSGKLILVAASALITGMGL 249 Query: 177 MVMR 180 V++ Sbjct: 250 FVVK 253 >gi|330815109|ref|YP_004358814.1| type II secretion system protein F [Burkholderia gladioli BSR3] gi|327367502|gb|AEA58858.1| type II secretion system protein F [Burkholderia gladioli BSR3] Length = 395 Score = 39.7 bits (91), Expect = 0.17, Method: Composition-based stats. Identities = 16/139 (11%), Positives = 42/139 (30%), Gaps = 6/139 (4%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 ++ ++AGL + + + ++ + +R R++ G S + Sbjct: 59 LVLFSQELLALLKAGLSIVEGLEALLEREGGARLRGVLERILAGLREGKRFSSLLGEQPD 118 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 P I ++ +L AL ++ K+ + ++ + G Sbjct: 119 VFPP-----LYVGIVRAAEGTSDLPRALQRYVDYQERIDTVRNKLVSSAIYPSILLVVGG 173 Query: 135 SLPFCVSTLVYFTSPGYMN 153 + + T V Sbjct: 174 GVSTFLITYVVPRFATIYE 192 >gi|238760626|ref|ZP_04621754.1| hypothetical protein yaldo0001_40360 [Yersinia aldovae ATCC 35236] gi|238701159|gb|EEP93748.1| hypothetical protein yaldo0001_40360 [Yersinia aldovae ATCC 35236] Length = 294 Score = 39.7 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 56/161 (34%), Gaps = 9/161 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 +D + V A LP+ +A+ + QS R+ +V GL L+++++ Sbjct: 66 NDLVLLTRQLSTLVAAALPLEEALLALAQQSEKPRHRALLEQVRNKILEGLPLADALASF 125 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + S + + G+L + L L+ + +K+K+ + + Sbjct: 126 PKT-----FSSLFRTMVAAGEASGHLDKVLLRLADNAEQSQKLKSKMLQALIYPL---VL 177 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 V+ L+ P + I+ + L + Sbjct: 178 TVVAISVVAILLTAVVPKVIEQFIHMQQALPLSTRLLISLS 218 >gi|256851415|ref|ZP_05556804.1| competence protein [Lactobacillus jensenii 27-2-CHN] gi|260660836|ref|ZP_05861751.1| competence protein [Lactobacillus jensenii 115-3-CHN] gi|282933135|ref|ZP_06338522.1| competence protein [Lactobacillus jensenii 208-1] gi|297206229|ref|ZP_06923624.1| competence protein [Lactobacillus jensenii JV-V16] gi|256616477|gb|EEU21665.1| competence protein [Lactobacillus jensenii 27-2-CHN] gi|260548558|gb|EEX24533.1| competence protein [Lactobacillus jensenii 115-3-CHN] gi|281302639|gb|EFA94854.1| competence protein [Lactobacillus jensenii 208-1] gi|297149355|gb|EFH29653.1| competence protein [Lactobacillus jensenii JV-V16] Length = 333 Score = 39.7 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 22/165 (13%), Positives = 54/165 (32%), Gaps = 17/165 (10%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + L+ + S++ GL +++++ V + + + + L E Sbjct: 16 REQL-EFLEYLAMSLKNGLSLAESLQV--------MPALWSKKQRLLRKLTYLMEQGVNF 66 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + GNL+E L L I R ++ K++A Sbjct: 67 SQILRQMGFGKTIASQVDLAMMQGNLNECLNQLVIINRLKEEQLKKLKAELSYP------ 120 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 F + + ++N + G L A ++ ++ Sbjct: 121 --ITLFVLMIFMLLFMQNFLNGQLGQEDGTANLVFAILIVVASVL 163 >gi|227891631|ref|ZP_04009436.1| type II secretory pathway/competence component protein [Lactobacillus salivarius ATCC 11741] gi|227866547|gb|EEJ73968.1| type II secretory pathway/competence component protein [Lactobacillus salivarius ATCC 11741] Length = 357 Score = 39.7 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 15/133 (11%), Positives = 48/133 (36%), Gaps = 9/133 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 I+ + AG + ++ I S +V + +G +S+++ Sbjct: 34 FFSILSDLLSAGFSLRQSLISI-QNIMPEFYSVSHKVKKNLLMGTKISDALKE------- 85 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + ++ G + +++ L +L R + K+++L + +++ + Sbjct: 86 NISKSTYYQLLI-AEQHGEMEKSIKQLGSLLERRVEQQNKLKSLMVYPMILFFMLIIIML 144 Query: 139 CVSTLVYFTSPGY 151 + + T + Sbjct: 145 GIKFWLKPTINNF 157 >gi|257057540|ref|YP_003135372.1| Flp pilus assembly protein TadC [Saccharomonospora viridis DSM 43017] gi|256587412|gb|ACU98545.1| Flp pilus assembly protein TadC [Saccharomonospora viridis DSM 43017] Length = 212 Score = 39.7 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 51/140 (36%), Gaps = 4/140 (2%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 D++ + AGLPV AV+ + ++ PV R LG S + + E Sbjct: 76 DLLGACLIAGLPVPTAVSTVADVATGPVAEVLRSTGNALALGASAESAWQHARNHPDTAE 135 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IGSLPFC 139 ++ + + G L+ L+ +R+ + + +A + + + LP Sbjct: 136 LARAAC---RTASSGSALAAQAFALAERIRNAATDRVEARAQRASVLVAGPLGLCFLPAF 192 Query: 140 VSTLVYFTSPGYMNVLINDP 159 + V G + L P Sbjct: 193 LCLGVIPVVLGLADHLTVTP 212 >gi|227832053|ref|YP_002833760.1| hypothetical protein cauri_0223 [Corynebacterium aurimucosum ATCC 700975] gi|262184093|ref|ZP_06043514.1| hypothetical protein CaurA7_08886 [Corynebacterium aurimucosum ATCC 700975] gi|227453069|gb|ACP31822.1| putative membrane protein [Corynebacterium aurimucosum ATCC 700975] Length = 185 Score = 39.7 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 48/138 (34%), Gaps = 9/138 (6%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 L++ + AGL AV + S ++ +G+ ++ + S + L+ Sbjct: 56 LELFAACLEAGLSTRSAVLAVAEASP-----QWSEAAALIGVGVPMNTAWSALASQPHLE 110 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IGSLPF 138 E+ + + + G ++ L LR + +A +A +A + + LP Sbjct: 111 ELVRLT---QLSGESGAAMATGCHRLVAQLRAEASAQATARAERAGVFIAAPLAVCFLPA 167 Query: 139 CVSTLVYFTSPGYMNVLI 156 + + L Sbjct: 168 FLVLGLIPVLISLGQQLF 185 >gi|239918297|ref|YP_002957855.1| type II secretion system protein F [Micrococcus luteus NCTC 2665] gi|239839504|gb|ACS31301.1| type II secretion system protein F [Micrococcus luteus NCTC 2665] Length = 339 Score = 39.7 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 36/141 (25%), Gaps = 7/141 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 LD++ + AG + A+ + + + + Sbjct: 205 VLDVLAALLSAGRSLPAALDDLGRTLPGARGLRATAALLLWGRDWDEAWAGLD-----TD 259 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G + LA + +R + + A + + L Sbjct: 260 PVWIETAARLRPLHRSGMAGARTLAETAAAVRQQTRRADERAAEELAVCLVMPLGLCLLP 319 Query: 139 CVSTLVYFTSPGYMNVLINDP 159 + P M +L P Sbjct: 320 AFVC--WGVVPVVMALLRAGP 338 >gi|309787221|ref|ZP_07681833.1| bacterial type II secretion system F domain protein [Shigella dysenteriae 1617] gi|308924799|gb|EFP70294.1| bacterial type II secretion system F domain protein [Shigella dysenteriae 1617] Length = 272 Score = 39.7 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 14/110 (12%), Positives = 31/110 (28%), Gaps = 16/110 (14%) Query: 88 ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 + +L G L E L+R R ++ + KV++ + + + V Sbjct: 1 MIRTGELTGKLDECCFELARQQRAQRQLTDKVKSALRYPIIILAMAIMVVVAMLHFVLPE 60 Query: 148 SPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVMRL 181 + G +L+ + ++MR Sbjct: 61 FAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGFLLAIANKLLMRR 110 >gi|302388992|ref|YP_003824813.1| Type II secretion system F domain protein [Thermosediminibacter oceani DSM 16646] gi|302199620|gb|ADL07190.1| Type II secretion system F domain protein [Thermosediminibacter oceani DSM 16646] Length = 274 Score = 39.7 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 54/156 (34%), Gaps = 2/156 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + K+R F + P +D+ A +P+ D + + VR+ R+ Sbjct: 116 IHFAKKERLEAFRREMPEIVDLFELGAAADVPLEDIFLITAESAQTKEVRNALTRLAAEY 175 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + + R + L E + + + + G L E L+ LS L + K Sbjct: 176 VMTREKEGCLRRFCNEVNLPEANILAMALLQGERTGRTL-EILSTLSSSLFNTATAKIAR 234 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 Q +ME K A + V+ +Y L Sbjct: 235 QDKAMEYKVLAATFFLMASIVTLYMYPYFTNIQGGL 270 >gi|229492933|ref|ZP_04386729.1| bacterial type II secretion system protein F domain protein [Rhodococcus erythropolis SK121] gi|229320207|gb|EEN86032.1| bacterial type II secretion system protein F domain protein [Rhodococcus erythropolis SK121] Length = 299 Score = 39.7 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 18/139 (12%), Positives = 54/139 (38%), Gaps = 1/139 (0%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESI 69 +F + +D++ R G+ + ++ + V + E G + ++ Sbjct: 156 EFAQALSSYIDLVALCRRGGVGSTQSLEIAAQVGDSWVFLRLDEELYEAGRSGEAPWSAL 215 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 +R+ + + L E+ + ++++ G ++ +L + LR + + A+ K + Sbjct: 216 TRVSQQLGLAELGDLADIMTMTGDKGASVYTSLRAKAASLRSAQTSAEQSAAVEATEKLA 275 Query: 130 AWIIGSLPFCVSTLVYFTS 148 + G ++ L+ Sbjct: 276 MPLAGLAGLFMALLLIPAV 294 >gi|262044851|ref|ZP_06017894.1| protein transporter HofC [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037820|gb|EEW39048.1| protein transporter HofC [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 155 Score = 39.7 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 40/136 (29%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 I+ + AG+ + + S R + G + +++SR Sbjct: 15 QQLSLIFTILALTQSAGISFLQGLQSVEESLSCPLWRQRLAQARALIVQGEPIWQALSRC 74 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P + + G L + L NL+ R++ +A A +E Sbjct: 75 GGFTP------LCLQLIRTGESAGALDQMLENLAHHHREQTYQRADSLAAHLEPMMLVIT 128 Query: 133 IGSLPFCVSTLVYFTS 148 + V + Sbjct: 129 GSLVGILVVAMYLPVF 144 >gi|289192729|ref|YP_003458670.1| Type II secretion system F domain protein [Methanocaldococcus sp. FS406-22] gi|288939179|gb|ADC69934.1| Type II secretion system F domain protein [Methanocaldococcus sp. FS406-22] Length = 559 Score = 39.7 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 52/145 (35%), Gaps = 2/145 (1%) Query: 16 FPNALDIIVRSVRA-GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 FP+ L + SV A G + ++ + P+ + +++ + LG+ ++S Sbjct: 332 FPDFLRSLGDSVSAKGGGMVSSLEYLSNHDFGPLTHDIKKLYKRLALGIDSNKSWRLFGF 391 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + FS + S GG+ A +S+ R ++ K + +++ Sbjct: 392 DSCSYLIQLFSDIFSRCIYFGGDPKTAAEIISKNFRKIVQLR-KSKYQNIQQFVGVVYGL 450 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDP 159 ++ +N L + Sbjct: 451 GGGITLALFASLGVAKMINELYSSL 475 >gi|309805401|ref|ZP_07699449.1| type II secretion system F domain protein [Lactobacillus iners LactinV 09V1-c] gi|308165286|gb|EFO67521.1| type II secretion system F domain protein [Lactobacillus iners LactinV 09V1-c] Length = 331 Score = 39.7 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 58/161 (36%), Gaps = 16/161 (9%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 LD + +S+ G + ++ ++ V +E +I+ ++ + + + Sbjct: 19 FLDYLQQSLNNGFSFNQSLKIL-----PHVWNEKVNIIQKLSSNIAQGN---DIGQSLVA 70 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 S + GNL E+L+ L++I+R + K+++ ++ Sbjct: 71 IGFSRMIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIKSEMAYP--------AVLI 122 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + +++ ++ A LIGI + Sbjct: 123 VMMVSLLIAMQTFLHSELSSDSSSSDFIFAIIISLIGIFFI 163 >gi|312874397|ref|ZP_07734427.1| type II secretion system F domain protein [Lactobacillus iners LEAF 2052A-d] gi|311090009|gb|EFQ48423.1| type II secretion system F domain protein [Lactobacillus iners LEAF 2052A-d] Length = 331 Score = 39.7 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 58/161 (36%), Gaps = 16/161 (9%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 LD + +S+ G + ++ ++ V +E +I+ ++ + + + Sbjct: 19 FLDYLQQSLNNGFSFNQSLKIL-----PHVWNEKVNIIQKLSSNIAQGN---DIGQSLVA 70 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 S + GNL E+L+ L++I+R + K+++ ++ Sbjct: 71 IGFSRMIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIKSEMAYP--------AVLI 122 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + +++ ++ A LIGI + Sbjct: 123 VMMVSLLIAMQTFLHSELSSDSSSSDFIFAIIISLIGIFFI 163 >gi|159040452|ref|YP_001539705.1| type II secretion system protein [Salinispora arenicola CNS-205] gi|157919287|gb|ABW00715.1| type II secretion system protein [Salinispora arenicola CNS-205] Length = 288 Score = 39.7 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 15/131 (11%), Positives = 38/131 (29%), Gaps = 1/131 (0%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMPL 78 LD++ + A ++ V + Q S + + + + + Sbjct: 156 LDLVALQLSAAHGPVQSLERAAEVCDGWVFDRIRESLRLAQLQMHSPWDELRDLADRIGI 215 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 E+ ++ G + E L + + LRD+ +A + + + Sbjct: 216 PELGDVGAIMRSSGSEGAQVHETLRSRADSLRDQIRTDNLARAEGVTGRLDIPGALLVFV 275 Query: 139 CVSTLVYFTSP 149 + Y Sbjct: 276 LLGFGTYPFVA 286 >gi|148807352|gb|ABR13426.1| hypothetical protein [Pseudomonas aeruginosa] Length = 328 Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 22/174 (12%), Positives = 57/174 (32%), Gaps = 10/174 (5%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHLGLSL 65 R + + + + G+P+ DAVA + + + L Sbjct: 19 RKERLQ-----FYESMSTLLENGVPLKDAVAEVHKIFAHEGQHPFHPVAIASREALMGLS 73 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + + L + ++ GNL +A+ + ++ + ++A + + Sbjct: 74 NGKRLATAMALYLPAQER---ALIEAGEMSGNLVQAMGDAVSLVEAQARIRATIWQALLY 130 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A + ++ L V+ + + + + L +A+ GI V+ Sbjct: 131 PLALSAMMVFLLCIVAYRMVPSLARLSDPVTWTGPLATLNAIASFVTGPGIYVL 184 >gi|104779904|ref|YP_606402.1| type II/IV secretion system membrane protein [Pseudomonas entomophila L48] gi|95108891|emb|CAK13587.1| putative type II/IV secretion system membrane protein [Pseudomonas entomophila L48] Length = 295 Score = 39.3 bits (90), Expect = 0.21, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 54/133 (40%), Gaps = 3/133 (2%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISR 71 + + ++ GL V A+ V+ + + E R V++ GL+L + + Sbjct: 149 EVSVLIPLLRILFETGLAVEQALRVLAQEGRSLVPNISDELRLVLQRVDSGLALGPELEK 208 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 R + + E+ ++ G ++L L +L DR+ + + M AK SA Sbjct: 209 SARLLAVDELIDTCVILQQLLVQGSGSMKSLLALKELLDDRRLTGLQERVSKMSAKMSAV 268 Query: 132 IIGSLPFCVSTLV 144 ++ L + ++ Sbjct: 269 MMVFLFPALLIVL 281 >gi|323478676|gb|ADX83914.1| type II secretion system protein [Sulfolobus islandicus HVE10/4] Length = 658 Score = 39.3 bits (90), Expect = 0.22, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 52/177 (29%), Gaps = 3/177 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + + P L I + G +S A+ + R EF RV++ S+ Sbjct: 428 REINDVENSLPQFLRDITEFRKIGYDLSRAIKTLA--GEKKYRREFNRVLDEIVKQDSMG 485 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 I+R F T + + + G + L L+ + K + + Sbjct: 486 IPITRAKINTRSWLGKFSLTTVQILIEGGAVRPDLLEYLTEFTLNFIQSKREAFSRMRAY 545 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV-LINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + L + + V L G A ++ ++ M Sbjct: 546 QVLGILTPILLIATILIAIVIISSFTVVTLPASTLGVPQFPNIIAQFILSSFILAEM 602 Score = 35.1 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 24/175 (13%), Positives = 58/175 (33%), Gaps = 5/175 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60 K ++ D+ P + +I +G + + + IV ++ E +I Sbjct: 193 KSRAREVRDSIQDEIPFFVTLITIINASGTTIYEGMRKIVQFPLFKAMKKEALLIIRDID 252 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 L S +++ R ++ S+F + + GG++ L +R + + + Sbjct: 253 LFGKSPLDALEHRARLTFNRDYSWFLAGYTSIIRSGGDIEAYLFQKAREFLNWLQFRWRF 312 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + +I L F + +V + N + + + I Sbjct: 313 YSERTSFLGELIVILFLIFPMFLIVLAF---FTNGAVISFLLVIPILFGTILYTI 364 >gi|315653337|ref|ZP_07906259.1| competence protein [Lactobacillus iners ATCC 55195] gi|315489262|gb|EFU78902.1| competence protein [Lactobacillus iners ATCC 55195] Length = 331 Score = 39.3 bits (90), Expect = 0.22, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 58/161 (36%), Gaps = 16/161 (9%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 LD + +S+ G + ++ ++ V +E +I+ ++ + + + Sbjct: 19 FLDYLQQSLNNGFSFNQSLKIL-----PHVWNEKVNIIQKLSSNIAQGN---DIGQSLVA 70 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 S + GNL E+L+ L++I+R + K+++ ++ Sbjct: 71 IGFSRMIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIKSEMAYP--------AVLI 122 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + +++ ++ A LIGI + Sbjct: 123 VMMVSLLIAMQTFLHSELSSDSSSSDFIFAIIISLIGIFFI 163 >gi|126700914|ref|YP_001089811.1| putative type IV pilus-assembly protein [Clostridium difficile 630] gi|254976894|ref|ZP_05273366.1| putative type IV pilus-assembly protein [Clostridium difficile QCD-66c26] gi|255094281|ref|ZP_05323759.1| putative type IV pilus-assembly protein [Clostridium difficile CIP 107932] gi|255316034|ref|ZP_05357617.1| putative type IV pilus-assembly protein [Clostridium difficile QCD-76w55] gi|255518691|ref|ZP_05386367.1| putative type IV pilus-assembly protein [Clostridium difficile QCD-97b34] gi|255651813|ref|ZP_05398715.1| putative type IV pilus-assembly protein [Clostridium difficile QCD-37x79] gi|260684839|ref|YP_003216124.1| putative type IV pilus-assembly protein [Clostridium difficile CD196] gi|260688497|ref|YP_003219631.1| putative type IV pilus-assembly protein [Clostridium difficile R20291] gi|306521601|ref|ZP_07407948.1| putative type IV pilus-assembly protein [Clostridium difficile QCD-32g58] gi|115252351|emb|CAJ70192.1| putative type II secretion system protein [Clostridium difficile] gi|260211002|emb|CBA66306.1| putative type IV pilus-assembly protein [Clostridium difficile CD196] gi|260214514|emb|CBE07020.1| putative type IV pilus-assembly protein [Clostridium difficile R20291] Length = 361 Score = 39.3 bits (90), Expect = 0.22, Method: Composition-based stats. Identities = 12/136 (8%), Positives = 41/136 (30%), Gaps = 5/136 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+ + +A+ + + E ++ + + P Sbjct: 231 FSRALSVLISSGIQIVEAIDMSASVIDNEFIYERLKISNNYIKKGNSIGKSLNLANVFPK 290 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 ++ + G L ++L +++ + N K + +E ++ + Sbjct: 291 -----LFISMANTGEESGKLDKSLNVINKFYENELNNKIEQIMKFIEPMLIVFMGLIIGT 345 Query: 139 CVSTLVYFTSPGYMNV 154 + +V N Sbjct: 346 FILAMVVPMFDAITNF 361 >gi|215405704|ref|ZP_03417885.1| transmembrane protein [Mycobacterium tuberculosis 02_1987] Length = 87 Score = 39.3 bits (90), Expect = 0.22, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 33/83 (39%) Query: 102 LANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + R + +R+ A+V A A+ASA I+ LP L ++ L+ G Sbjct: 1 MRAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVG 60 Query: 162 HMLLGVAAAFMLIGIMVMRLMIN 184 LL V G++ + + Sbjct: 61 GWLLVVGLTLACAGLLWSDRITD 83 >gi|322371246|ref|ZP_08045798.1| type II secretion system protein [Haladaptatus paucihalophilus DX253] gi|320549236|gb|EFW90898.1| type II secretion system protein [Haladaptatus paucihalophilus DX253] Length = 640 Score = 39.3 bits (90), Expect = 0.23, Method: Composition-based stats. Identities = 20/157 (12%), Positives = 44/157 (28%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-----DPVRSEFRRV 55 + +R + + + + V G P S AV + V Sbjct: 409 VSVRRSRRDDAKDREIKDFVHAVSSHVSLGRPFSTAVERVARDVDLGALQPNVNDLAFSS 468 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 T G +++SR V + +++ +GG+ L + + Sbjct: 469 NLTSREGDLRRDALSRFVEDVGTPLADQTIGLVTGTLDVGGDTETVFDTLQVEIGRLYHQ 528 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 K +++ + W+ L + V Sbjct: 529 KKSLRSNMLVYVVVGWMTALLVVGIMVAVNAYVLDSF 565 Score = 38.2 bits (87), Expect = 0.60, Method: Composition-based stats. Identities = 26/195 (13%), Positives = 58/195 (29%), Gaps = 22/195 (11%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIET 58 + R + P A+ + + + + +S FR+V+ Sbjct: 142 LGWAASARRSNIERTLPGAVRYLQALSSGSDDLLAMLRKVADREESYGETAVAFRKVLNK 201 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTV-ISVQSQLGGNLSEAL-----ANLSRILRDR 112 L S+ + + + R P ++V + ++ G + E LS Sbjct: 202 AALTGSVDDGLRIVARDTPSRDVLAPFLLKFREHAEQGPDALEQYLQMEGRMLSHRQSRS 261 Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV--------------LIND 158 L E ++ +L V T++ +PG + Sbjct: 262 HEQAQDFLELLAEMFIVLLVVPALLVIVLTVMSVLAPGLSKPAPPPFGGFSVRTFIVYAS 321 Query: 159 PRGHMLLGVAAAFML 173 +++G AA ++ Sbjct: 322 GAFILVIGAGAAVLV 336 >gi|309803910|ref|ZP_07697994.1| type II secretion system F domain protein [Lactobacillus iners LactinV 11V1-d] gi|309809545|ref|ZP_07703403.1| type II secretion system F domain protein [Lactobacillus iners SPIN 2503V10-D] gi|308164005|gb|EFO66268.1| type II secretion system F domain protein [Lactobacillus iners LactinV 11V1-d] gi|308170217|gb|EFO72252.1| type II secretion system F domain protein [Lactobacillus iners SPIN 2503V10-D] Length = 331 Score = 39.3 bits (90), Expect = 0.23, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 58/161 (36%), Gaps = 16/161 (9%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 LD + +S+ G + ++ ++ V +E +I+ ++ + + + Sbjct: 19 FLDYLQQSLNNGFSFNQSLKIL-----PHVWNEKVNIIQKLSSNIAQGN---DIGQSLVA 70 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 S + GNL E+L+ L++I+R + K+++ ++ Sbjct: 71 IGFSRTIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIKSEMAYP--------AVLI 122 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + +++ ++ A LIGI + Sbjct: 123 VMMVSLLIAMQTFLHSELSSDSSSSDFIFAIIISLIGIFFI 163 >gi|255308367|ref|ZP_05352538.1| putative type IV pilus-assembly protein [Clostridium difficile ATCC 43255] Length = 361 Score = 39.3 bits (90), Expect = 0.23, Method: Composition-based stats. Identities = 12/136 (8%), Positives = 41/136 (30%), Gaps = 5/136 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+ + +A+ + + E ++ + + P Sbjct: 231 FSRALSVLISSGIQIVEAIDMSASVIDNEFIYERLKISNNYIKKGNSIGKSLNLANIFPK 290 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 ++ + G L ++L +++ + N K + +E ++ + Sbjct: 291 -----LFISMANTGEESGKLDKSLNVINKFYENELNNKIEQIMKFIEPMLIVFMGLIIGT 345 Query: 139 CVSTLVYFTSPGYMNV 154 + +V N Sbjct: 346 FILAMVVPMFDAITNF 361 >gi|124027108|ref|YP_001012428.1| hypothetical protein Hbut_0211 [Hyperthermus butylicus DSM 5456] gi|123977802|gb|ABM80083.1| hypothetical protein Hbut_0211 [Hyperthermus butylicus DSM 5456] Length = 297 Score = 39.3 bits (90), Expect = 0.23, Method: Composition-based stats. Identities = 22/170 (12%), Positives = 52/170 (30%), Gaps = 1/170 (0%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 F + L I+ + A +DA+ P S R+ L + Sbjct: 87 RMFEEQLIEFLLILPGMLAASPSTADALLRTARMLRPPFNSYVERMARIYASTGDLERAF 146 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + P + + + ++ GG++ L+ ++ + + +A E K Sbjct: 147 NEAFTAAPSKV-RILARSVVTAAKTGGHIHIVLSKVAAYADASRRLVGLAEARLSEYKMI 205 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A + + + V + + GV A ++++ Sbjct: 206 AGLAAVAYALTAGVTVALVAQATAVPLPGMTTRIDTGVLAGLYFYSLIMI 255 >gi|182678560|ref|YP_001832706.1| type II secretion system protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182634443|gb|ACB95217.1| type II secretion system protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 398 Score = 39.3 bits (90), Expect = 0.23, Method: Composition-based stats. Identities = 22/156 (14%), Positives = 52/156 (33%), Gaps = 5/156 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L+ + +R+GLP+ +A+ + P+ + G S S+++ + Sbjct: 66 FLNELALLLRSGLPLVEALDLGAHGLPKPLARAVTSLRGALLEGKSFSQALRQRPEVFGP 125 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 ++ ++ G+L LA +++ + + KV A + Sbjct: 126 -----LIAALAEVAETVGDLDGMLAAVAKQRASDQALSDKVSAALRYPAFLTISAFLVLL 180 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 V G ++ DP + + L+ Sbjct: 181 FFLLQVIPQFDGVVSEGSGDPGVLVATVFGLSHWLV 216 >gi|323475960|gb|ADX86566.1| type II secretion system protein [Sulfolobus islandicus REY15A] Length = 658 Score = 39.3 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 52/177 (29%), Gaps = 3/177 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + + P L I + G +S A+ + R EF RV++ S+ Sbjct: 428 REINDVENSLPQFLRDITEFRKIGYDLSRAIKTLA--GEKKYRREFNRVLDEIVKQDSMG 485 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 I+R F T + + + G + L L+ + K + + Sbjct: 486 IPITRAKINTRSWLGKFSLTTVQILIEGGAVRPDLLEYLTEFTLNFIQSKREAFSRMRAY 545 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV-LINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + L + + V L G A ++ ++ M Sbjct: 546 QVLGILTPILLIATILIAIVIISSFTVVTLPASTLGVPQFPNIIAQFILSSFILAEM 602 Score = 34.7 bits (78), Expect = 5.3, Method: Composition-based stats. Identities = 23/175 (13%), Positives = 57/175 (32%), Gaps = 5/175 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60 K ++ D+ P + +I +G + + + IV ++ E +I Sbjct: 193 KSRAREVRDSIQDEIPFFVTLITIINASGTTIYEGMRKIVQFPLFKAMKKEALLIIRDID 252 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 S +++ R ++ S+F + + GG++ L +R + + + Sbjct: 253 FFGKSPLDALEHRARLTFNRDYSWFLAGYTSIIRSGGDIEAYLFQKAREFLNWLQFRWRF 312 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + +I L F + +V + N + + + I Sbjct: 313 YSERTSFLGELIVILFLIFPMFLIVLAF---FTNGAVISFLLVIPILFGTILYTI 364 >gi|170077322|ref|YP_001733960.1| type IV pilus biogenesis protein [Synechococcus sp. PCC 7002] gi|169884991|gb|ACA98704.1| type IV pilus biogenesis protein [Synechococcus sp. PCC 7002] Length = 412 Score = 39.3 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 14/137 (10%), Positives = 41/137 (29%), Gaps = 7/137 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 I R+G+P+ ++ ++ + + + G LS ++ R Sbjct: 281 FCRIFGTLTRSGVPILNSFDIVGATAGNVVIAKAINDAKSEIQEGGMLSVALDR------ 334 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + + G L + ++ D K +E I + Sbjct: 335 DRVFPILAIQMMTIGEETGELDSMMMKVADFYEDEVEQTVKALTSILEPAMMVIIAAMVG 394 Query: 138 FCVSTLVYFTSPGYMNV 154 + ++ + ++ Sbjct: 395 VILLSMYLPMFKVFEDL 411 >gi|319651530|ref|ZP_08005658.1| hypothetical protein HMPREF1013_02270 [Bacillus sp. 2_A_57_CT2] gi|317396845|gb|EFV77555.1| hypothetical protein HMPREF1013_02270 [Bacillus sp. 2_A_57_CT2] Length = 343 Score = 39.3 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 22/178 (12%), Positives = 52/178 (29%), Gaps = 17/178 (9%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L + G P+S+A+ ++ Q + E + + G + ++ M Sbjct: 14 FLKNTGELLSRGYPLSEALESMMHQLPPKRKHEISQCLSQLKEGFPFYQILANM------ 67 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + ++ G L+ A S ++ + K+Q L +I L Sbjct: 68 -NFNNNLIGYVFFAEQHGGLASAFLEGSEMVLRKGKDIQKLQKLMTYPIFLMFITAFLFV 126 Query: 139 CV----------STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 V + P + + + L + + +++ F Sbjct: 127 FVDKVLLPRFSSLFVSMHLKPNFFTKAVYLFGDLLPLFILIVLFGLVTLLIYYFFRFR 184 >gi|312872427|ref|ZP_07732496.1| type II secretion system F domain protein [Lactobacillus iners LEAF 2062A-h1] gi|311092009|gb|EFQ50384.1| type II secretion system F domain protein [Lactobacillus iners LEAF 2062A-h1] Length = 331 Score = 39.3 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 58/161 (36%), Gaps = 16/161 (9%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 LD + +S+ G + ++ ++ V +E +I+ ++ + + + Sbjct: 19 FLDYLQQSLNNGFSFNQSLKIL-----PHVWNEKVNIIQKLSSNIAQGN---DIGQSLVA 70 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 S + GNL E+L+ L++I+R + K+++ ++ Sbjct: 71 IGFSRMIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIKSEMAYP--------AVLI 122 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + +++ ++ A LIGI + Sbjct: 123 VMMVSLLIAMQTFLHSELSSDSSSSDFIFAIIISLIGIFFI 163 >gi|238918693|ref|YP_002932207.1| protein transport protein HofC [Edwardsiella ictaluri 93-146] gi|238868261|gb|ACR67972.1| protein transport protein HofC [Edwardsiella ictaluri 93-146] Length = 398 Score = 39.3 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 14/140 (10%), Positives = 42/140 (30%), Gaps = 6/140 (4%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRY 75 + + + + AG+P+ A+ ++ ++ GL+LS+++ Sbjct: 61 SDFIAQLADLLEAGVPLLSALDLMANGHPHTEWRVLIHQLSREVADGLTLSQALRGQPAI 120 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + + G L++ L+R + + ++ + Sbjct: 121 FPALYSRTLAAA-----EQSGALADVCRQLARQQQQAHALHQRLLRALRYPLFLLSVALL 175 Query: 136 LPFCVSTLVYFTSPGYMNVL 155 + + + L Sbjct: 176 IALGMLLTLLPQFAQLYASL 195 Score = 35.9 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 15/132 (11%), Positives = 33/132 (25%), Gaps = 5/132 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 ++ ++AG+ + A+ + L + R Sbjct: 264 LAQLFQMLSLMLQAGITLPAALNCCRRSLPLAAYRRALHTGVLRLRQGELLSAALRDPHL 323 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P Q + Q + G L+ +L R +++ A E Sbjct: 324 FPPQ-----CRQLIRQGEAAGRLAAVSHHLGEFYRHSAQRRSETLASLAEPAMLVISATL 378 Query: 136 LPFCVSTLVYFT 147 + V + Sbjct: 379 IALLVLAMYLPI 390 >gi|170079287|ref|YP_001735925.1| Type II secretory pathway, putative [Synechococcus sp. PCC 7002] gi|169886956|gb|ACB00670.1| Type II secretory pathway, putative [Synechococcus sp. PCC 7002] Length = 308 Score = 39.3 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 20/158 (12%), Positives = 52/158 (32%), Gaps = 6/158 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + +++AG+ + AVA+ +G+ R ++ VI G L ES + Sbjct: 3 EQQQALFFRQLGATLKAGMGLGQAVALAMGEIPRRAREPWQGVILQLERGHGLRESWLPV 62 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + S ++ + ++ G L ++S L + + ++ + + Sbjct: 63 -----RSQFSAWAIALLEIAETSGALVSVCRDVSDTLVEMAERRRLIRGILLRG-LVMVW 116 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + + + + + M+ A Sbjct: 117 SWVMVIYLLLGGSLLAGDFGATALTTAIALMVFLYGAI 154 >gi|330011992|ref|ZP_08307209.1| bacterial type II secretion system protein F domain protein [Klebsiella sp. MS 92-3] gi|328533981|gb|EGF60633.1| bacterial type II secretion system protein F domain protein [Klebsiella sp. MS 92-3] Length = 163 Score = 39.3 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 40/136 (29%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 I+ + AG+ + + S R + G + +++SR Sbjct: 23 QQLSLIFTILALTQSAGISFLQGLQSVEESLSCPLWRQRLAQARALIVQGEPIWQALSRC 82 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P + + G L + L NL+ R++ +A A +E Sbjct: 83 GGFTP------LCLQLIRTGESAGALDQMLENLAHHHREQTYQRADSLAAHLEPMMLVIT 136 Query: 133 IGSLPFCVSTLVYFTS 148 + V + Sbjct: 137 GSLVGILVVAMYLPVF 152 >gi|237756396|ref|ZP_04584940.1| pilin biogenesis protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237691447|gb|EEP60511.1| pilin biogenesis protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 250 Score = 39.3 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 7/84 (8%) Query: 108 ILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 ++ K+ + S A I + + T V T + + + Sbjct: 2 YYEKLAAIRRKIISASWYPAAVLIIATVIVLGLLTFVVPTFAEIYASFGGELPFLTQILI 61 Query: 168 AA-------AFMLIGIMVMRLMIN 184 ++G V+ ++IN Sbjct: 62 NISNILKENILYVMGFFVILVIIN 85 >gi|271962853|ref|YP_003337049.1| hypothetical protein Sros_1308 [Streptosporangium roseum DSM 43021] gi|270506028|gb|ACZ84306.1| hypothetical protein Sros_1308 [Streptosporangium roseum DSM 43021] Length = 311 Score = 39.3 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 62/166 (37%), Gaps = 12/166 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K + F LD++ ++ G V +A+ + V S E + Sbjct: 149 IKRDAARMRRDFRHVVGAFLDLVAMNLAGGRGVPEALMMAVSVGSPGADDEGANWAMNRI 208 Query: 61 LG---------LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111 ++ +++ ++ + + E+ S + + + G + +L + LR Sbjct: 209 REALGNARIVGITPWQALGQLGDEINVDELRDLSAALGLVADDGAKVRASLTARAATLRR 268 Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 R+ + + ++ + ++ L C +++ + P M +L + Sbjct: 269 RELAEVE---GQAGERSQSMLVAQLLLCAGFVIFLSFPAAMKMLGS 311 >gi|300790608|ref|YP_003770899.1| type II secretion system protein [Amycolatopsis mediterranei U32] gi|299800122|gb|ADJ50497.1| type II secretion system protein [Amycolatopsis mediterranei U32] Length = 252 Score = 39.3 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 56/173 (32%), Gaps = 15/173 (8%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 AL +V +R+G + V +L+ + +R+ + Sbjct: 92 ATALRTMVAELRSGA-----------HPVTAAEAAAEVVPAVAGDLRALATA-ARLDTEV 139 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 P + + ++ + G +++ L R +++A +ASA ++ L Sbjct: 140 PAPALPRLAAAWTLAKRHGLPMADVLDAARRDAEAGLAFGRRMRAKLAGPRASAAVLTGL 199 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM---INFD 186 P L ++VL G +LL + G R + + Sbjct: 200 PVLCVLLGQAMGAAPLSVLTGSTPGQVLLVAGCVLLWAGTAWCRALSGRVRIR 252 >gi|145588373|ref|YP_001154970.1| type II secretion system protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046779|gb|ABP33406.1| type II secretion system protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 348 Score = 39.3 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 16/133 (12%), Positives = 40/133 (30%), Gaps = 1/133 (0%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + + +GLP+ DA+ V S+ + + + + Sbjct: 211 LTYWCRTLGHLLESGLPLPDALRVTAQSSNHWLSHDCSAEVFKHLTQGWPLGEALKRGDP 270 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 ++ + S+ G LS+ L + L + + + + ++E + Sbjct: 271 KSRLFDHETLQLLHIASESGC-LSQMLNKRAMTLGSQLSNRLNSLSQTLEPLLIIVVGFI 329 Query: 136 LPFCVSTLVYFTS 148 + V L Sbjct: 330 IGSLVIILYLPIF 342 >gi|86151953|ref|ZP_01070166.1| general secretory pathway protein F [Campylobacter jejuni subsp. jejuni 260.94] gi|315124905|ref|YP_004066909.1| general secretory pathway protein F [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841061|gb|EAQ58310.1| general secretory pathway protein F [Campylobacter jejuni subsp. jejuni 260.94] gi|315018627|gb|ADT66720.1| general secretory pathway protein F [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 392 Score = 38.9 bits (89), Expect = 0.28, Method: Composition-based stats. Identities = 21/181 (11%), Positives = 56/181 (30%), Gaps = 10/181 (5%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 ++F + GL V +A+ + +++++ L +L+++ Sbjct: 50 QRLKDENFILFFKELALLCEVGLSVQEAIREL---YLMHSCKIMKKILDNLILAQNLNQA 106 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 ++ + ++ G +SE + +S++ + +++ Sbjct: 107 FENA-----NFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPTL 161 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMINFD 186 I + V L H++L + GI + L + F Sbjct: 162 VFLSIIGAFLFLMLFVVPNFKDLFENLGVSLPFITHVMLEIYNFLDDYGIFCIFLFVIFI 221 Query: 187 V 187 V Sbjct: 222 V 222 >gi|291546645|emb|CBL19753.1| Bacterial type II secretion system protein F domain [Ruminococcus sp. SR1/5] Length = 151 Score = 38.9 bits (89), Expect = 0.29, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 50/150 (33%), Gaps = 8/150 (5%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIV----GQSSDPVRSEFRRV---IETQHLGLS 64 L D+P + V+AGL A I + R + + G+S Sbjct: 1 MLMDYPGLIMKFTLLVQAGLTARKAFQKIALDYGKREDGKKREAYEEIRVACYEMDSGIS 60 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 +E+ R + ST++ + L++ L S + + KA+V + Sbjct: 61 EAEAYRRFGERCGQVKYKTLSTLLIQNLQKGSRYLADLLEKESVEAWEERKRKARVLGDT 120 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153 K ++ L ++ ++ + Sbjct: 121 AATKLLLPMVLMLLVVMAVIMLPACLSFYG 150 >gi|28493667|ref|NP_787828.1| hypothetical protein TWT700 [Tropheryma whipplei str. Twist] gi|28572860|ref|NP_789640.1| integral membrane protein [Tropheryma whipplei TW08/27] gi|28410993|emb|CAD67378.1| putative integral membrane protein [Tropheryma whipplei TW08/27] gi|28476709|gb|AAO44797.1| unknown [Tropheryma whipplei str. Twist] Length = 310 Score = 38.9 bits (89), Expect = 0.29, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 57/164 (34%), Gaps = 3/164 (1%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET---QHLGLSLSESISRMVRYMPLQ 79 + + G+ + A + + + + + + + ES + Sbjct: 22 LAVLLDGGITPASAWKHASHTTDNYPKQFTAACLAAGSGRDIAAGIRESDFSGLESPEKH 81 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + V ++ G N++ +L +LSR +++ + Q ++A I+G LP Sbjct: 82 AWFALAAAWWVGTRSGANMANSLLSLSRAFSHIASVQREAQVAMAGPSSTAKIVGFLPIF 141 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 L G +NVL+ G + L M I MI Sbjct: 142 SLVLSAALGFGALNVLLFSIPGLLCLSGGLLLMFIYKRWTGSMI 185 >gi|227831596|ref|YP_002833376.1| type II secretion system protein [Sulfolobus islandicus L.S.2.15] gi|284999148|ref|YP_003420916.1| type II secretion system protein [Sulfolobus islandicus L.D.8.5] gi|227458044|gb|ACP36731.1| type II secretion system protein [Sulfolobus islandicus L.S.2.15] gi|284447044|gb|ADB88546.1| type II secretion system protein [Sulfolobus islandicus L.D.8.5] Length = 658 Score = 38.9 bits (89), Expect = 0.29, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 51/177 (28%), Gaps = 3/177 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + + P L I + G +S A+ + R EF RV++ S+ Sbjct: 428 REINDVENSLPQFLRDITEFRKIGYDLSRAIKTLA--GEKKYRREFNRVLDEIVKQDSMG 485 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 I+R F T + + + G + L L+ + K + + Sbjct: 486 IPITRAKINTRSWLGKFSLTTVQILIEGGAVRPDLLEYLTEFTLNFIQSKREAFSRMRAY 545 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV-LINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + L + + V L G ++ ++ M Sbjct: 546 QVLGILTPILLIATILIAIVIISSFTVVTLPASTLGVPQFPNIITQFILSSFILAEM 602 Score = 35.1 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 23/175 (13%), Positives = 57/175 (32%), Gaps = 5/175 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60 K ++ D+ P + +I +G + + + IV ++ E +I Sbjct: 193 KSRAREVRDSIQDEIPFFVTLITIINASGTTIYEGMRKIVQFPLFKAMKKEALLIIRDID 252 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 S +++ R ++ S+F + + GG++ L +R + + + Sbjct: 253 FFGKSPLDALEHRARLTFNRDYSWFLAGYTSIIRSGGDIEAYLFQKAREFLNWLQFRWRF 312 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + +I L F + +V + N + + + I Sbjct: 313 YSERTSFLGELIVILFLIFPMFLIVLAF---FTNGAVISFLLVIPILFGTILYTI 364 >gi|255102462|ref|ZP_05331439.1| putative type IV pilus-assembly protein [Clostridium difficile QCD-63q42] Length = 361 Score = 38.9 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 12/136 (8%), Positives = 41/136 (30%), Gaps = 5/136 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +G+ + +A+ + + E ++ + + P Sbjct: 231 FSRALSVLISSGIQIVEAIDMSASVVDNEFIYERLKISNNYIKKGNSIGKSLNLANIFPK 290 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 ++ + G L ++L +++ + N K + +E ++ + Sbjct: 291 -----LFISMANTGEESGKLDKSLNVINKFYENELNNKIEQIMKFIEPMLIVFMGLIIGT 345 Query: 139 CVSTLVYFTSPGYMNV 154 + +V N Sbjct: 346 FILAMVVPMFDAITNF 361 >gi|253681650|ref|ZP_04862447.1| bacterial type II secretion system protein F [Clostridium botulinum D str. 1873] gi|253561362|gb|EES90814.1| bacterial type II secretion system protein F [Clostridium botulinum D str. 1873] Length = 396 Score = 38.9 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 51/138 (36%), Gaps = 6/138 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMP 77 + ++AG+ + A+ VI Q + + + + G +L +SI++ + P Sbjct: 65 VCKQLGELLKAGVNIETALEVIENQKINYLIGDSLKTIRRDIEKGRTLFQSINKFSKIYP 124 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 F + + + GNL + L++ D+ +K K++ M + + Sbjct: 125 -----EFMRQMILIGEKSGNLEDIFLKLAKYYTDKHKIKKKIKNAIMYPLCVLIMTIIVT 179 Query: 138 FCVSTLVYFTSPGYMNVL 155 ++ + L Sbjct: 180 LFITFRIIPKFATNFIKL 197 >gi|229580548|ref|YP_002838948.1| type II secretion system protein [Sulfolobus islandicus Y.G.57.14] gi|229583406|ref|YP_002841805.1| type II secretion system protein [Sulfolobus islandicus Y.N.15.51] gi|228011264|gb|ACP47026.1| type II secretion system protein [Sulfolobus islandicus Y.G.57.14] gi|228014122|gb|ACP49883.1| type II secretion system protein [Sulfolobus islandicus Y.N.15.51] Length = 658 Score = 38.9 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 51/177 (28%), Gaps = 3/177 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + + P L I + G +S A+ + R EF RV++ S+ Sbjct: 428 REINDVENSLPQFLRDITEFRKIGYDLSRAIKTLA--GEKKYRREFNRVLDEIVKQDSMG 485 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 I+R F T + + + G + L L+ + K + + Sbjct: 486 IPITRAKINTRSWLGKFSLTTVQILIEGGAVRPDLLEYLTEFTLNFIQSKREAFSRMRAY 545 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV-LINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + L + + V L G ++ ++ M Sbjct: 546 QVLGILTPILLIATILIAIVIISSFTVVTLPASTLGVPQFPNIITQFILSSFILAEM 602 Score = 35.1 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 23/175 (13%), Positives = 57/175 (32%), Gaps = 5/175 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60 K ++ D+ P + +I +G + + + IV ++ E +I Sbjct: 193 KSRAREVRDSIQDEIPFFVTLITIINASGTTIYEGMRKIVQFPLFKAMKKEALLIIRDID 252 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 S +++ R ++ S+F + + GG++ L +R + + + Sbjct: 253 FFGKSPLDALEHRARLTFNRDYSWFLAGYTSIIRSGGDIEAYLFQKAREFLNWLQFRWRF 312 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + +I L F + +V + N + + + I Sbjct: 313 YSERTSFLGELIVILFLIFPMFLIVLAF---FTNGAVISFLLVIPILFGTILYTI 364 >gi|167758849|ref|ZP_02430976.1| hypothetical protein CLOSCI_01192 [Clostridium scindens ATCC 35704] gi|167663589|gb|EDS07719.1| hypothetical protein CLOSCI_01192 [Clostridium scindens ATCC 35704] Length = 386 Score = 38.9 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 53/167 (31%), Gaps = 6/167 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 L+ + +G + +A+A + + +P + ++ S Sbjct: 129 VDQQIDTFLNNVRVLTASGFSLPEAIAEVKENAKEP----ADITLIDKNGHGGRRTMYSF 184 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M +YMP +S ++ L + ++ + ++ A Sbjct: 185 MYQYMPYILLSILCYSLTYIMIAFNKPDVKRRMLCSAVSGKRQNAQLILGYAVIGLAVWV 244 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + LP + + P + L N ++L + L+G +V Sbjct: 245 LCNMLPVLMYGKEFLKDPHLPHYLFNS--FLLMLVSLSISFLVGSLV 289 >gi|213852420|ref|ZP_03381952.1| general secretory pathway component, cryptic [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 92 Score = 38.9 bits (89), Expect = 0.31, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 2/71 (2%) Query: 5 IKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62 +K R + + + A LP+ +++AVI QSS+ + +V G Sbjct: 10 VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLGDVLNQVRSAILEG 69 Query: 63 LSLSESISRMV 73 LS+++ Sbjct: 70 HPLSDALQHFP 80 >gi|229586069|ref|YP_002844571.1| type II secretion system protein [Sulfolobus islandicus M.16.27] gi|228021119|gb|ACP56526.1| type II secretion system protein [Sulfolobus islandicus M.16.27] Length = 658 Score = 38.9 bits (89), Expect = 0.31, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 51/177 (28%), Gaps = 3/177 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + + P L I + G +S A+ + R EF RV++ S+ Sbjct: 428 REINDVENSLPQFLRDITEFRKIGYDLSRAIKTLA--GEKKYRREFNRVLDEIVKQDSMG 485 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 I+R F T + + + G + L L+ + K + + Sbjct: 486 IPITRAKINTRSWLGKFSLTTVQILIEGGAVRPDLLEYLTEFTLNFIQSKREAFSRMRAY 545 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV-LINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + L + + V L G ++ ++ M Sbjct: 546 QVLGILTPILLIATILIAIVIISSFTVVTLPASTLGVPQFPNIITQFILSSFILAEM 602 Score = 35.1 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 23/175 (13%), Positives = 57/175 (32%), Gaps = 5/175 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60 K ++ D+ P + +I +G + + + IV ++ E +I Sbjct: 193 KSRAREVRDSIQDEIPFFVTLITIINASGTTIYEGMRKIVQFPLFKAMKKEALLIIRDID 252 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 S +++ R ++ S+F + + GG++ L +R + + + Sbjct: 253 FFGKSPLDALEHRARLTFNRDYSWFLAGYTSIIRSGGDIEAYLFQKAREFLNWLQFRWRF 312 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + +I L F + +V + N + + + I Sbjct: 313 YSERTSFLGELIVILFLIFPMFLIVLAF---FTNGAVISFLLVIPILFGTILYTI 364 >gi|254478362|ref|ZP_05091741.1| hypothetical protein CDSM653_1507 [Carboxydibrachium pacificum DSM 12653] gi|214035720|gb|EEB76415.1| hypothetical protein CDSM653_1507 [Carboxydibrachium pacificum DSM 12653] Length = 249 Score = 38.9 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 20/145 (13%), Positives = 48/145 (33%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 ++ P AL+I + + G+ + ++ IV VR G SL ++++ Sbjct: 103 EEELPAALEIFISGLEVGMNKENIISYIVRTREGVVRDLLYEAQIRLDTGSSLKDALTFA 162 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 F I+ + + ++ E L L + ++ + +A ++ I Sbjct: 163 ADKSLNDHFRRFVKAITGEYESVKDMRENLEELLEEVEEKNYNQKIERAAVLDNSLFFPI 222 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIN 157 + + + N Sbjct: 223 FLGYFVPILIMFALPFVISLRSFFN 247 >gi|254167666|ref|ZP_04874517.1| Bacterial type II secretion system protein F domain [Aciduliprofundum boonei T469] gi|197623475|gb|EDY36039.1| Bacterial type II secretion system protein F domain [Aciduliprofundum boonei T469] Length = 550 Score = 38.9 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 16/149 (10%), Positives = 48/149 (32%), Gaps = 2/149 (1%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH-LGL 63 +KR + + + LP + ++ + + E ++ L Sbjct: 73 EKRKKEIERYMHLFITRMAVLASTRLPRKEIFRILSEVREYGALSDEVAKIYNLMEYWNL 132 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 SL ++ + + P E++ F ++ + G + L ++ + +K + Sbjct: 133 SLPDATRIVAKKCPSVELADFLDRLAHSADAGEDFEVFLEKERTVVMETYAIKYEAALSQ 192 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 M+ ++ + + P + Sbjct: 193 MDVYKETFVSMLISMLFFAVFVAILPMFT 221 >gi|238764792|ref|ZP_04625734.1| General secretion pathway protein [Yersinia kristensenii ATCC 33638] gi|238696990|gb|EEP89765.1| General secretion pathway protein [Yersinia kristensenii ATCC 33638] Length = 377 Score = 38.9 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 43/115 (37%), Gaps = 6/115 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISR 71 D + V A +P+ + + +I Q + + V S + + G S S+S+S+ Sbjct: 37 NMDLVLITRQMSILVNASIPLDETLEIIEKQGAKNNVNSVIHEIRKKILEGHSFSDSLSQ 96 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + + +L G+L L+ L+ + ++ K+ + Sbjct: 97 FP-----VVFNSLYRSMIAAGELSGHLGLVLSKLADHIEQAYKVRNKIIQALVYP 146 >gi|302038134|ref|YP_003798456.1| general secretion pathway protein F [Candidatus Nitrospira defluvii] gi|300606198|emb|CBK42531.1| General secretion pathway protein F [Candidatus Nitrospira defluvii] Length = 404 Score = 38.9 bits (89), Expect = 0.33, Method: Composition-based stats. Identities = 19/151 (12%), Positives = 46/151 (30%), Gaps = 7/151 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 ++ ++AGLPV +++ ++ E + + + + S Sbjct: 74 LLALIKAGLPVLRVWDLLIDRTQRAPFREALKAVRQDI----RGGASASEALGKHSSYFS 129 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + GNL+E L L+ ++ KV + + V Sbjct: 130 DLYLATIRAGEQSGNLAEVLQRYIAYLKLMIGLRQKVTKALAYPAFLVVVGVA---VVGF 186 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 L+ + P +++V ++ Sbjct: 187 LLSYVMPTFISVYGESSANLPTATRMLISVI 217 >gi|257386199|ref|YP_003175972.1| type II secretion system protein [Halomicrobium mukohataei DSM 12286] gi|257168506|gb|ACV46265.1| type II secretion system protein [Halomicrobium mukohataei DSM 12286] Length = 630 Score = 38.9 bits (89), Expect = 0.33, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 60/185 (32%), Gaps = 8/185 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQ 59 ++ + K R + P A+ + + + Q + F+R++ Sbjct: 130 LRWVGKARRSDIEATLPGAVRYLRVLASGEHDQRAMLGRVADQDAYGETAVAFQRILNRA 189 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTV-ISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L SL E + + P +++ + + + E + L + + Sbjct: 190 ALTGSLDEGLEHVASETPSRDLLAPFLLKFREHANQSADALEGYLQMEGRLLSHEQSRRH 249 Query: 119 VQ-----ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + L E ++ +L + T++ SPG + P G M + + Sbjct: 250 ERATGFLELLAELFVVLLVLPALLVLIVTIMGVLSPGLSEQV-ATPAGPMTVRSVLVYGS 308 Query: 174 IGIMV 178 G ++ Sbjct: 309 AGFVL 313 Score = 36.3 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 19/172 (11%), Positives = 46/172 (26%), Gaps = 15/172 (8%) Query: 8 RTAKFL----DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---------SSDPVRSEFRR 54 R AK + + + + V G P S+AV + + + Sbjct: 399 RRAKVDDAKDREIQDFVHAVSGHVSLGRPFSEAVERVAEEVDLGALQSDVDQLAFTLGLT 458 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 + ++ R V + ++ G + + L + + Sbjct: 459 ASPDDDATDGRAAALDRFVERVGTPMAEQTIGLVVGALDAGSDAEDVFETLQTEIGKLYH 518 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHML 164 + +++ + A W L + V L ++ G + Sbjct: 519 ERKALRSSLLVYVAVGWTTALLVVGIVVAVNAYVLDGFAQLSTVSSGPGITI 570 >gi|238792810|ref|ZP_04636441.1| General secretion pathway protein [Yersinia intermedia ATCC 29909] gi|238727918|gb|EEQ19441.1| General secretion pathway protein [Yersinia intermedia ATCC 29909] Length = 389 Score = 38.9 bits (89), Expect = 0.33, Method: Composition-based stats. Identities = 15/123 (12%), Positives = 38/123 (30%), Gaps = 4/123 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 DD + V A +P+ + + VI Q ++ +I + + Sbjct: 49 NDDLVLITRQMSTLVNAAIPLDEVLEVIEKQ---NKKNIMNGIIRDIRKKV-VEGYSLSD 104 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + ++ G+L L+ L+ + + +K K+ + + Sbjct: 105 SLSHHSNVFNPLYRSMITAGEISGHLGMILSRLADHIEQTQKVKRKLGQTLIYPAILIIV 164 Query: 133 IGS 135 Sbjct: 165 SLG 167 >gi|227826590|ref|YP_002828369.1| type II secretion system protein [Sulfolobus islandicus M.14.25] gi|229583754|ref|YP_002842255.1| type II secretion system protein [Sulfolobus islandicus M.16.27] gi|238618676|ref|YP_002913501.1| type II secretion system protein [Sulfolobus islandicus M.16.4] gi|227458385|gb|ACP37071.1| type II secretion system protein [Sulfolobus islandicus M.14.25] gi|228018803|gb|ACP54210.1| type II secretion system protein [Sulfolobus islandicus M.16.27] gi|238379745|gb|ACR40833.1| type II secretion system protein [Sulfolobus islandicus M.16.4] Length = 616 Score = 38.9 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 21/183 (11%), Positives = 58/183 (31%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L + R + P + +R+GL + ++ S+ + + Sbjct: 117 LSQLTENRRIGLDSEAPAFAAVFNVFLRSGLSARYVFDYLSKSTAMQYASQIASYVNKRV 176 Query: 61 LG--LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + +I + Y P + + F T + G + + + ++ + A Sbjct: 177 KYLGEGVESAIVESLNYSPSKIFNEFLTTYVTAVRTGAPVLDTMEAKTKDILKNIETLAS 236 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM-LIGIM 177 A ++ A ++I ++ + L ++ A + LI ++ Sbjct: 237 TAAENLSGIAEGFVIWLSSGFITFFLVLLLQAIFPSLFGSVPFPIMAIFAMIMIPLINLL 296 Query: 178 VMR 180 + Sbjct: 297 FIW 299 >gi|300173922|ref|YP_003773088.1| ComG operon protein 2 [Leuconostoc gasicomitatum LMG 18811] gi|299888301|emb|CBL92269.1| ComG operon protein 2 [Leuconostoc gasicomitatum LMG 18811] Length = 344 Score = 38.9 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 67/182 (36%), Gaps = 12/182 (6%) Query: 1 MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 + KKR F + + +++G +S ++ ++ + + RRVI+ Sbjct: 5 LTKFQKKRVKHFKTSEQVLFFQELGELLQSGYSISQSLDILA-SAHTKWQHWLRRVIKEL 63 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + G +L + + +VS + + GNL+E L + L + + KV Sbjct: 64 NQGFALHVILRK--------DVSNQILLQLKLADQHGNLTETLVAIGENLAKLQQQQNKV 115 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGY--MNVLINDPRGHMLLGVAAAFMLIGIM 177 + ++G + + +Y + + + + L + +L ++ Sbjct: 116 TQVMRYPIILFGLLGMMFVGLKYFLYPILNQWQDTSTIGTKESHNYLYFIVGMIILFSLV 175 Query: 178 VM 179 ++ Sbjct: 176 II 177 Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 9/130 (6%), Positives = 36/130 (27%), Gaps = 3/130 (2%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + +GL + + + I +S +I H + + + Sbjct: 209 QVTQQLSTLLSSGLTIPEILDEISQ---GDEKSNRMTIILANHARQHFQKGYTIESYILK 265 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + L++ L+ ++ + +++ I ++ Sbjct: 266 QPYFNRSLAGYFSRGHEPKVLADYLSYYAKTQFQLLMQQTDRLIGTLQPLFFGVIGVAIV 325 Query: 138 FCVSTLVYFT 147 +++ Sbjct: 326 ILYMSMLLPM 335 >gi|254478244|ref|ZP_05091625.1| Bacterial type II secretion system protein F domain [Carboxydibrachium pacificum DSM 12653] gi|214035840|gb|EEB76533.1| Bacterial type II secretion system protein F domain [Carboxydibrachium pacificum DSM 12653] Length = 249 Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 19/145 (13%), Positives = 48/145 (33%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 ++ P AL+I + + G+ + + IV VR G SL +++ Sbjct: 103 EEELPAALEIFISGLEVGMTAENIIGYIVRTRKGVVRDLLYEAQVRIDTGSSLKDALLSA 162 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 F+ ++ + + ++ E L L + ++ + +A +++ I Sbjct: 163 ADKSLNDHFKRFAKAVTGEYESVKDMRENLEELLEEVEEKNYNQKIKRAGTLDNSLFFPI 222 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIN 157 + + + N Sbjct: 223 FLGYFVPILIMFALPFVISLRSFFN 247 >gi|160902099|ref|YP_001567680.1| type II secretion system protein [Petrotoga mobilis SJ95] gi|160359743|gb|ABX31357.1| type II secretion system protein [Petrotoga mobilis SJ95] Length = 382 Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 55/173 (31%), Gaps = 11/173 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQHLGLSLSESIS 70 +D + +D + V +GL + +A+ +V Q +R + GL + Sbjct: 58 MDQMISLVDNLYLLVNSGLTLFEAMEFLVFNEQVDKFIRGVVFKGYFLVKKGLDYKTA-- 115 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 E+ + S+ L E L+NL + K ++ + + Sbjct: 116 -----FDFPEIDNYFRYTINISKTTLILRENLSNLKDYYNNVKLSRSTAEKSLIYPLLIL 170 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI--MVMRL 181 I L F ++ V + IN +L F G+ + Sbjct: 171 SSILVLLFLLNFWVIPQFSTLLGYDINLNLSTYMLISMLIFFFFGLITFWIGK 223 >gi|289596991|ref|YP_003483687.1| Type II secretion system F domain protein [Aciduliprofundum boonei T469] gi|289534778|gb|ADD09125.1| Type II secretion system F domain protein [Aciduliprofundum boonei T469] Length = 554 Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 16/149 (10%), Positives = 48/149 (32%), Gaps = 2/149 (1%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH-LGL 63 +KR + + + LP + ++ + + E ++ L Sbjct: 77 EKRKKEIERYMHLFITRMAVLASTRLPRKEIFRILSEVREYGALSDEVAKIYNLMEYWNL 136 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 SL ++ + + P E++ F ++ + G + L ++ + +K + Sbjct: 137 SLPDATRIVAKKCPSVELADFLDRLAHSADAGEDFEVFLEKERTVVMETYAIKYEAALSQ 196 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 M+ ++ + + P + Sbjct: 197 MDVYKETFVSMLISMLFFAVFVAILPMFT 225 >gi|56964272|ref|YP_176003.1| late competence protein ComGB [Bacillus clausii KSM-K16] gi|56910515|dbj|BAD65042.1| late competence protein ComGB [Bacillus clausii KSM-K16] Length = 345 Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 16/127 (12%), Positives = 34/127 (26%), Gaps = 5/127 (3%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + R + G+ + A+ V GQ E R + L S + Sbjct: 217 QLGRLLETGMSLQQALNVFEGQDYLRFFKEEARW-----MNNELERGESFIAYIKEKPYY 271 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 I G ++ L S L + + + + ++ I + Sbjct: 272 LDELAAIVENGMRTGTIASDLQQYSEWLYQEMDDRLQKGVVWLQPVLLLAIGAFVFGLFL 331 Query: 142 TLVYFTS 148 ++ Sbjct: 332 VVMLPMF 338 >gi|295395524|ref|ZP_06805718.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC 49030] gi|294971543|gb|EFG47424.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC 49030] Length = 217 Score = 38.6 bits (88), Expect = 0.37, Method: Composition-based stats. Identities = 21/144 (14%), Positives = 46/144 (31%), Gaps = 8/144 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + LD++ +RAGLP+ A + + D + L+L + Sbjct: 74 EQLAFDLDLVAICLRAGLPIPRAFELAARATQDRSG------LGRLGRSLALGSVDNAFA 127 Query: 74 RYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + G L+ L+ L+ +R + + ++ A + + Sbjct: 128 GVQDPVGEHRTVVSLVEFSRSTGVALAPLLSGLASDMRRAERRRRQMAAAKLGVHLVIPL 187 Query: 133 -IGSLPFCVSTLVYFTSPGYMNVL 155 + LP + T V + + Sbjct: 188 GVCVLPSVILTGVVPVVITLVGDM 211 >gi|254167116|ref|ZP_04873969.1| Bacterial type II secretion system protein F domain [Aciduliprofundum boonei T469] gi|197623972|gb|EDY36534.1| Bacterial type II secretion system protein F domain [Aciduliprofundum boonei T469] Length = 550 Score = 38.6 bits (88), Expect = 0.37, Method: Composition-based stats. Identities = 15/149 (10%), Positives = 47/149 (31%), Gaps = 2/149 (1%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH-LGL 63 +KR + + + LP + ++ + + E ++ L Sbjct: 73 EKRKKEIERYMHLFITRMAVLASTRLPRKEIFRILSEVREYGALSDEVAKIYNLMEYWNL 132 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 SL ++ + + P E++ ++ + G + L ++ + +K + Sbjct: 133 SLPDATRIVAKKCPSVELADLLDRLAHSADAGEDFEVFLEKERTVVMETYAIKYEAALSQ 192 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 M+ ++ + + P + Sbjct: 193 MDVYKETFVSMLISMLFFAVFVAILPMFT 221 >gi|145596549|ref|YP_001160846.1| hypothetical protein Strop_4038 [Salinispora tropica CNB-440] gi|145305886|gb|ABP56468.1| hypothetical protein Strop_4038 [Salinispora tropica CNB-440] Length = 331 Score = 38.6 bits (88), Expect = 0.37, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 51/146 (34%), Gaps = 2/146 (1%) Query: 41 VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSE 100 Q + + GLS+ +S + + + ++ + G L++ Sbjct: 183 ADQLRRRHLDQLCDLAADLRAGLSVGQSTALSAAGRSGSTLIRSAVRLA--DRTGAPLAD 240 Query: 101 ALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 L + R +A A + A+A+AW++ +LP L Y + VL++ Sbjct: 241 LLERIDVDARAADRGRATAAAQAAGARATAWLLAALPLGGIGLGYGIGVDPVAVLLHSAV 300 Query: 161 GHMLLGVAAAFMLIGIMVMRLMINFD 186 G +A + G+ + Sbjct: 301 GGSCAVLAVMLQVAGLFWAERLTAIR 326 >gi|55378880|ref|YP_136730.1| flagellar assembly protein J [Haloarcula marismortui ATCC 43049] gi|55231605|gb|AAV47024.1| flagella accessory protein J [Haloarcula marismortui ATCC 43049] Length = 582 Score = 38.6 bits (88), Expect = 0.38, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 63/187 (33%), Gaps = 9/187 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 K L+ +R + + F + + + + + + + E R+++ Sbjct: 83 KILLSQRKRELNNRFHLLITHMTVLATTKIDRMEVFRTLAEEDEYGELAMEMHRIVQLVD 142 Query: 61 -LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 LSL ++ R + +P + VS F ++ G L + L + + K Sbjct: 143 TWNLSLDDACRRRAKQVPSRAVSDFFDRLAYTLGAGQGLDDYLLTEQEQIIQHYSTVYKS 202 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI--GIM 177 S+E ++ L + + P VL + V F+ + G Sbjct: 203 SLDSLEVMKDLYLSMILSMTFALVFAVVLP----VLTGTNPTMTVSAVIVMFVFVQTGFY 258 Query: 178 V-MRLMI 183 + +R M Sbjct: 259 LAIRSMA 265 >gi|323702759|ref|ZP_08114419.1| stage III sporulation protein AB [Desulfotomaculum nigrificans DSM 574] gi|323532276|gb|EGB22155.1| stage III sporulation protein AB [Desulfotomaculum nigrificans DSM 574] Length = 172 Score = 38.6 bits (88), Expect = 0.39, Method: Composition-based stats. Identities = 19/145 (13%), Positives = 50/145 (34%), Gaps = 5/145 (3%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGL-PVSDAVAVIVGQSSDPVRSEFRRVIET---QHLG 62 +R + NAL ++ + G P+ +A+A++ + V FRR E Sbjct: 27 RRPGEI-RALRNALQMLETEISYGATPLPEALALVAERCDSRVAQLFRRASEELLTMRGV 85 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + + Y P ++ I + +S+ + ++ ++ ++ + Sbjct: 86 TAREAWETAIADYYPKSALNRCDRAILQELGNALGISDREDQVKHLVLTKEQLQMEQAKA 145 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFT 147 + + + L F + Sbjct: 146 EDASARNTKVYNYLGFLGGLTIVLI 170 >gi|294501237|ref|YP_003564937.1| ComG operon protein [Bacillus megaterium QM B1551] gi|294351174|gb|ADE71503.1| ComG operon protein [Bacillus megaterium QM B1551] Length = 348 Score = 38.6 bits (88), Expect = 0.40, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 59/154 (38%), Gaps = 7/154 (4%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 L + + + G +S A++ + Q S+ +++ + +E G SL ++ ++ Sbjct: 20 LKQVSKLLEKGYTLSQALSFLTFQVSNKEKTDIEKCLEQLKRGESLHDAFVKL------- 72 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + ++ GNL AL S ++ ++ + K Q L I S+ F Sbjct: 73 QFHRDILSYLYFAEQHGNLQFALKESSSMIEEKVRHRKKFQKLVQYPVLLLLFILSILFV 132 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 +ST++ N +LL + A Sbjct: 133 LSTVLLPQFEALYLSFGNKQSSFILLFMQAMSFF 166 >gi|283779917|ref|YP_003370672.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283438370|gb|ADB16812.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 355 Score = 38.6 bits (88), Expect = 0.40, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 41/129 (31%), Gaps = 5/129 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + D I RA LP+ DA+ + + R V G SL +++ + Sbjct: 12 EQLACLHDEIAAISRAKLPLGDALTAFGNDVPGKLGAAAREVGSRIASGESLEQAVGAVS 71 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + P + + G L AL ++ + R + V + + ++ Sbjct: 72 SHWPQ-----AYSAVVKIGVRVGRLPAALEAIADVSRTIVAARRAVLSAMIPPLFVFFLG 126 Query: 134 GSLPFCVST 142 L Sbjct: 127 YGLLLFFIA 135 >gi|318606997|emb|CBY28495.1| general secretion pathway protein F [Yersinia enterocolitica subsp. palearctica Y11] Length = 161 Score = 38.6 bits (88), Expect = 0.40, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 6/105 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISR 71 D + V A +P+ +A+A+I Q + V S ++ + G SLS+S+S+ Sbjct: 62 NRDLILITRQMSILVNAAIPLDEALALIENQSTKSKVDSVIHKIRKRVLEGHSLSDSLSQ 121 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 + + +L G+L L+NL+ + + +K Sbjct: 122 FPAI-----FNSLYRSMIAAGELSGHLGLVLSNLADHIEQTRKVK 161 >gi|312875135|ref|ZP_07735150.1| type II secretion system F domain protein [Lactobacillus iners LEAF 2053A-b] gi|311089341|gb|EFQ47770.1| type II secretion system F domain protein [Lactobacillus iners LEAF 2053A-b] Length = 331 Score = 38.6 bits (88), Expect = 0.40, Method: Composition-based stats. Identities = 21/161 (13%), Positives = 58/161 (36%), Gaps = 16/161 (9%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 LD + +S+ G + ++ ++ V +E +I+ ++ + + + Sbjct: 19 FLDYLQQSLNNGFSFNQSLKIL-----PHVWNEKVNIIQKLSSNIAQGN---DIGQSLVA 70 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 S + GNL E+L+ L++I+R + K+++ ++ Sbjct: 71 IGFSRTIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIKSEMAYP--------AVLI 122 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + +++ ++ A L+GI + Sbjct: 123 VMMVSLLIAMQTFLHSELSSDSSSSDFIFAIIVSLLGIFFI 163 >gi|167769280|ref|ZP_02441333.1| hypothetical protein ANACOL_00603 [Anaerotruncus colihominis DSM 17241] gi|167668248|gb|EDS12378.1| hypothetical protein ANACOL_00603 [Anaerotruncus colihominis DSM 17241] Length = 290 Score = 38.6 bits (88), Expect = 0.40, Method: Composition-based stats. Identities = 21/150 (14%), Positives = 49/150 (32%), Gaps = 2/150 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 + + + P + I + + A V + Q+S PV S V+ S Sbjct: 141 KRDEIEAELPRFVATITQELAASRDVLSMIEH-YKQNSGPVFSAELDVLTADMRSGSYEA 199 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +++R +S + + + LS ++ + + K +A+ + K Sbjct: 200 ALTRFEARFNSPLLSDIVRGLIGVLRGDNGVH-YFQMLSHDMKQLELQRLKAKAMKIPPK 258 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + L + T + ++ L Sbjct: 259 IRVFSFVLLMCFLVTYLSIIIYEIIHSLGG 288 >gi|323140863|ref|ZP_08075776.1| bacterial type II secretion system protein F domain [Phascolarctobacterium sp. YIT 12067] gi|322414601|gb|EFY05407.1| bacterial type II secretion system protein F domain [Phascolarctobacterium sp. YIT 12067] Length = 346 Score = 38.6 bits (88), Expect = 0.40, Method: Composition-based stats. Identities = 18/143 (12%), Positives = 46/143 (32%), Gaps = 5/143 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + +R+GLP+ +A+ ++ S R+ + G SL+++++ Sbjct: 17 FYRQLAVILRSGLPLLNALQLLQKHGSAKQMLLCYRLQQRLRRGSSLAQALAAEADCC-- 74 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + + G L+ L L+ + ++ VQ + Sbjct: 75 ---TQLAVTLVAVGEESGELATLLEQLADYYSRQLKLRRFVQRAVTYPAFLLLASFCVLL 131 Query: 139 CVSTLVYFTSPGYMNVLINDPRG 161 + + + P G Sbjct: 132 LFLLYILPVLADTYSAMGVLPMG 154 >gi|309806178|ref|ZP_07700194.1| type II secretion system F domain protein [Lactobacillus iners LactinV 03V1-b] gi|308167397|gb|EFO69560.1| type II secretion system F domain protein [Lactobacillus iners LactinV 03V1-b] Length = 331 Score = 38.6 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 21/161 (13%), Positives = 58/161 (36%), Gaps = 16/161 (9%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 LD + +S+ G + ++ ++ V +E +I+ ++ + + + Sbjct: 19 FLDYLQQSLNNGFSFNQSLKIL-----PHVWNEKVNIIKKLSSNIAQGN---DIGQSLVA 70 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 S + GNL E+L+ L++I+R + K+++ ++ Sbjct: 71 IGFSRTIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIKSEMAYP--------AVLI 122 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + +++ ++ A L+GI + Sbjct: 123 VMMVSLLIAMQTFLHSELSSDSSSSDFIFAIIVSLLGIFFI 163 >gi|228982433|ref|ZP_04142692.1| hypothetical protein bthur0002_55660 [Bacillus thuringiensis Bt407] gi|228776616|gb|EEM24924.1| hypothetical protein bthur0002_55660 [Bacillus thuringiensis Bt407] Length = 274 Score = 38.6 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 57/146 (39%), Gaps = 4/146 (2%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 K L FP+ + I + A + + AV + D R + I + S+ ++ Sbjct: 127 KEKLLGGFPDFIRITRGYLTADISFTKAVEGSIPYVGDAWRPLLQEFIVNCDIH-SVEKA 185 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 I ++ + + V +++ + + G ++ E+ + + M+ + + + Sbjct: 186 IDKLKDQVDVFAVKELLSLVRLNLEQGVDVRESFER---QIDKVREMQLEAIMNRIAKRQ 242 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNV 154 ++ P ++ + F P + ++ Sbjct: 243 LLAMVLQGPLLLTLIGAFGLPTFYSM 268 >gi|295706584|ref|YP_003599659.1| ComG operon protein [Bacillus megaterium DSM 319] gi|294804243|gb|ADF41309.1| ComG operon protein [Bacillus megaterium DSM 319] Length = 348 Score = 38.6 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 59/154 (38%), Gaps = 7/154 (4%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 L + + + G +S A++ + Q S+ +++ + +E G SL ++ ++ Sbjct: 20 LKQVSKLLEKGYTLSQALSFLTFQVSNKEKTDIEKCLEQLKRGESLHDAFVKL------- 72 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + ++ GNL AL S ++ ++ + K Q L I S+ F Sbjct: 73 QFHRDILSYLYFAEQHGNLQFALKESSSMIEEKVRHRKKFQKLVQYPVLLLLFILSILFV 132 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 +ST++ N +LL + A Sbjct: 133 LSTVLLPQFEALYLSFGNKQSSFILLFMQAMSFF 166 >gi|259501490|ref|ZP_05744392.1| competence protein [Lactobacillus iners DSM 13335] gi|302191536|ref|ZP_07267790.1| Type II secretory pathway/competence component [Lactobacillus iners AB-1] gi|312871496|ref|ZP_07731590.1| type II secretion system F domain protein [Lactobacillus iners LEAF 3008A-a] gi|325913082|ref|ZP_08175453.1| type II secretion system protein F domain protein [Lactobacillus iners UPII 60-B] gi|259167008|gb|EEW51503.1| competence protein [Lactobacillus iners DSM 13335] gi|311093016|gb|EFQ51366.1| type II secretion system F domain protein [Lactobacillus iners LEAF 3008A-a] gi|325477638|gb|EGC80779.1| type II secretion system protein F domain protein [Lactobacillus iners UPII 60-B] Length = 331 Score = 38.6 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 21/161 (13%), Positives = 58/161 (36%), Gaps = 16/161 (9%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 LD + +S+ G + ++ ++ V +E +I+ ++ + + + Sbjct: 19 FLDYLQQSLNNGFSFNQSLKIL-----PHVWNEKVNIIKKLSSNIAQGN---DIGQSLVA 70 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 S + GNL E+L+ L++I+R + K+++ ++ Sbjct: 71 IGFSRMIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIKSEMAYP--------AVLI 122 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + +++ ++ A L+GI + Sbjct: 123 VMMVSLLIAMQTFLHSELSSDSSSSDFIFAIIISLLGIFFI 163 >gi|15606501|ref|NP_213881.1| fimbrial assembly protein PilC2 [Aquifex aeolicus VF5] gi|2983710|gb|AAC07273.1| fimbrial assembly protein PilC2 [Aquifex aeolicus VF5] Length = 394 Score = 38.6 bits (88), Expect = 0.42, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 10/145 (6%) Query: 30 GLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVI 88 G+P++ A+ ++ Q+ + +++ F +V E G SL+E+ R F T + Sbjct: 76 GIPLTRALELVSSQTENENLKNAFFQVKEYVEKGYSLAEAFKRTG------VFPEFLTEM 129 Query: 89 SVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 Q G NL L+ K KV ++I + V F Sbjct: 130 LTGVQRGENLEYVFQVAGEYLQKVAEFKNKVITSITYPA---FVITFSFLSLFVAVKFVV 186 Query: 149 PGYMNVLINDPRGHMLLGVAAAFML 173 P VL + L+ Sbjct: 187 PRIAKVLEGFGKELPLITKLVILFS 211 Score = 37.4 bits (85), Expect = 0.90, Method: Composition-based stats. Identities = 18/141 (12%), Positives = 48/141 (34%), Gaps = 7/141 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 + + + A +P+S A+++ V S+ +R + ++ G S S Sbjct: 258 NLSRFSRTLSMLLEASVPLSTALSIAVKSVSNVYLRKKLESLVSEVEKGKSFS------A 311 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + ++ G L + L L+++ + + +E A I Sbjct: 312 LLSRENVLPELFVNLVETGEVSGELEKTLNLLAQVYEKQSDRLISFWLRLVEPLAILVIG 371 Query: 134 GSLPFCVSTLVYFTSPGYMNV 154 ++ +++ + M Sbjct: 372 ITVGIIAFSVILPLTEISMGF 392 >gi|254381325|ref|ZP_04996690.1| integral membrane protein [Streptomyces sp. Mg1] gi|194340235|gb|EDX21201.1| integral membrane protein [Streptomyces sp. Mg1] Length = 293 Score = 38.6 bits (88), Expect = 0.42, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 43/114 (37%), Gaps = 3/114 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAG-LPVSDAVAVIVGQSSDPVR-SEFRRVIET 58 ++ K+ A+F LD++ RAG + A+ + + Sbjct: 139 LRDKAKRARAEFAHAMAAYLDLVA-LRRAGNVSAEQAMEQAAQVGRGWAFLRIQTALARS 197 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112 + + ES++R+ + L + + ++ + G ++ L + ++ LR Sbjct: 198 RVDKVPHWESLTRLTAELDLPVLDDLAAIMRQSADDGASVYATLRSRAKNLRTE 251 >gi|110667294|ref|YP_657105.1| type II secretion system, transmembrane protein TadC [Haloquadratum walsbyi DSM 16790] gi|109625041|emb|CAJ51457.1| type II secretion system, transmembrane protein TadC [Haloquadratum walsbyi DSM 16790] Length = 645 Score = 38.6 bits (88), Expect = 0.43, Method: Composition-based stats. Identities = 26/186 (13%), Positives = 63/186 (33%), Gaps = 10/186 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ 59 ++ + R A P+A+ + + + + + R V+ T Sbjct: 147 LRWVTTARRAAIDRTLPSAVRYLNVLSSGSDNRRAMLRRVADTDAYGETATSIRTVLNTA 206 Query: 60 HLGLSLSESISRMVRYMPLQEV--SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + +++E + R+ R P QE F Q L L+ SR+LR R++ + Sbjct: 207 AMTGNINEGLRRVARDTPAQETLGPFLLKFREHADQGEDALGNYLSMESRMLRYRQDSER 266 Query: 118 KVQALSME-------AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + +E + + V +L+ + ++ ++ +A Sbjct: 267 QRAQGFLELLAELFVVLLVLPALVVIIITVMSLLSPGLAAPIQTIVGVVTIQEVIVYGSA 326 Query: 171 FMLIGI 176 ++ + Sbjct: 327 VFILAV 332 >gi|330719879|gb|EGG98361.1| MSHA biogenesis protein MshG [gamma proteobacterium IMCC2047] Length = 151 Score = 38.6 bits (88), Expect = 0.44, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 39/134 (29%), Gaps = 7/134 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + AG+P+ A+ V+ + V ++ + G S S + + Sbjct: 16 NLGRFARTYATVTNAGVPIIQALKVVANAVGNAYVADRIAKMSSSIERGESFSRTATNSG 75 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + P + + GN+ E L ++ + K +E + Sbjct: 76 LFSP------LVLQMIAVGEETGNMDELLDEVADFYEQEVDYDLKKLGDRIEPILLIVVA 129 Query: 134 GSLPFCVSTLVYFT 147 G + + Sbjct: 130 GMVLILALGVFLPM 143 >gi|302329928|gb|ADL20122.1| Putative type II secretion system protein [Corynebacterium pseudotuberculosis 1002] gi|308275612|gb|ADO25511.1| Putative type II secretion system protein [Corynebacterium pseudotuberculosis I19] Length = 217 Score = 38.6 bits (88), Expect = 0.44, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 8/129 (6%) Query: 20 LDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSE---FRRVIETQHLGLSLSESISRMVR 74 LD+ V++GL S + + +SS + V +G+ + + Sbjct: 77 LDLFAACVQSGLTPSQSAFAVAATEESSPRDARVRSGWLEVAMMLEMGMPAERAWQSLAE 136 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + TV + G L+EA L+R LR R + + +A + + Sbjct: 137 ---HPALGDLVTVARASERSGATLAEACERLARQLRARASDLSLARAERAGVLIALPLTV 193 Query: 135 SLPFCVSTL 143 L Sbjct: 194 CFLPAFFLL 202 >gi|291460201|ref|ZP_06599591.1| putative type II secretion system protein F [Oribacterium sp. oral taxon 078 str. F0262] gi|291417148|gb|EFE90867.1| putative type II secretion system protein F [Oribacterium sp. oral taxon 078 str. F0262] Length = 483 Score = 38.6 bits (88), Expect = 0.44, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 11/138 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS---------- 50 ++ KKR L D+ + + ++ + AGL + +A I R Sbjct: 319 LRERAKKRELSLLLDYSDLVSKLLLYLGAGLSLRNAFEKISEHYEALPREGPGEERALSG 378 Query: 51 EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRIL 109 E R ++ +S SE+ R + L+ + +I + NL EAL Sbjct: 379 ELRTMLLQLKSNVSESEAYRSFARRISLKPYARLIALIEQKRRNGSRNLREALKLEMEDA 438 Query: 110 RDRKNMKAKVQALSMEAK 127 + + AK K Sbjct: 439 FECRKNTAKRLGEEASTK 456 >gi|329919944|ref|ZP_08276846.1| type II secretion system protein F domain protein [Lactobacillus iners SPIN 1401G] gi|328936831|gb|EGG33267.1| type II secretion system protein F domain protein [Lactobacillus iners SPIN 1401G] Length = 331 Score = 38.6 bits (88), Expect = 0.45, Method: Composition-based stats. Identities = 21/161 (13%), Positives = 58/161 (36%), Gaps = 16/161 (9%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 LD + +S+ G + ++ ++ V +E +I+ ++ + + + Sbjct: 19 FLDYLQQSLNNGFSFNQSLKIL-----PHVWNEKVNIIKKLSSNIAQGN---DIGQSLVA 70 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 S + GNL E+L+ L++I+R + K+++ ++ Sbjct: 71 IGFSRMIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIKSEMAYP--------AVLI 122 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + +++ ++ A L+GI + Sbjct: 123 VMMVSLLIAMQTFLHSELSSDSSSSDFIFAIIISLLGIFFI 163 >gi|327539154|gb|EGF25783.1| general secretion pathway protein F-putative pilus protein [Rhodopirellula baltica WH47] Length = 341 Score = 38.6 bits (88), Expect = 0.45, Method: Composition-based stats. Identities = 19/175 (10%), Positives = 46/175 (26%), Gaps = 16/175 (9%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG + + S R ++ E G ++SE Sbjct: 8 DFCRRFGVGLGAGADLLKLLESEAKHGSAQQRVAMTKIREGAKDGHAISEM-----MRHQ 62 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 V++ + G L + LS + ++ I + Sbjct: 63 KPFFPPLMVVMTRVGETTGKLERTMLALSEHYAQQYTLRQNFLRAIAWPGLQLLIGIGVV 122 Query: 138 FCVSTLVYFTSP-------GYMNVLINDPRGHML----LGVAAAFMLIGIMVMRL 181 + ++ + + + P+G ++ + V A +R Sbjct: 123 SLMIWIMGVLTAPTGGQMTDMLGFGLRGPKGVLIFWSYIAVVVAVFGGIYFAVRK 177 >gi|11498653|ref|NP_069881.1| flagellar assembly protein J [Archaeoglobus fulgidus DSM 4304] gi|2649538|gb|AAB90189.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 541 Score = 38.6 bits (88), Expect = 0.45, Method: Composition-based stats. Identities = 23/165 (13%), Positives = 57/165 (34%), Gaps = 4/165 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDII-VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 + + ++ +K + F + + AG+ V++A++ I ++ +R ++ Sbjct: 283 LARIDDQKISKRDEAFTAFIRSLGAIKSGAGVSVAEALSRIDQKNLGELRELVMQLYRRL 342 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 +GL S R V +S + + + LGG+ +S + ++ K Sbjct: 343 SMGLDAKLSWERFVGESGSYLISKLTAIFVDATDLGGDADVVGEIVSSSNLEMVLLRLKR 402 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVY---FTSPGYMNVLINDPRG 161 +S + + + Y++ L G Sbjct: 403 DLISSGFINLIIPLHLAMVGLVLFITQILAIFSDYISNLFASQLG 447 Score = 34.7 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 17/170 (10%), Positives = 48/170 (28%), Gaps = 7/170 (4%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESIS 70 +D L + A L ++ + F +V + TQ + + Sbjct: 34 MDNDLLFTLTYMASLSTANLSRDKIFEMVSEKKEYAPSRYFSKVKDLTQKWHYDYATACD 93 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN------LSRILRDRKNMKAKVQALSM 124 + + + + ++ G +E L R +N+++ + Sbjct: 94 LIAEKIKHERLKKLFNRMANAIAAGEPDNEFLEREWRAFKTIRKDEYERNLESLRKWSDA 153 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + +++ +++ L + + + FML Sbjct: 154 YTSLLVSASLISVVVLLSVIIYSAGDPGATLTASAFANFAISLFGVFMLF 203 >gi|326202875|ref|ZP_08192742.1| hypothetical protein Cpap_2184 [Clostridium papyrosolvens DSM 2782] gi|325986952|gb|EGD47781.1| hypothetical protein Cpap_2184 [Clostridium papyrosolvens DSM 2782] Length = 319 Score = 38.6 bits (88), Expect = 0.45, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 65/183 (35%), Gaps = 12/183 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ IK+R P+ +D S + + A+ ++ + RV ++ Sbjct: 148 LRYSIKQRI-------PSFIDSFRSSFVSQNRIKPALQECCSNANKHLARIMLRVSDSSD 200 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + SL R+ + F T++ + GG L L L++ + N++ K Sbjct: 201 INDSLCAVRGRINDIW----FNIFVTLLINYRENGGELINQLYKLNKTITRYNNIEKKKN 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY-FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + V L+ M + N + + + + LI + V+ Sbjct: 257 RRLIWYEFFTLGASIFSLPVIMLINRMILGANMRLYYNTAQAAGKIAIYSLSALIIVRVL 316 Query: 180 RLM 182 R + Sbjct: 317 RRL 319 >gi|120555558|ref|YP_959909.1| type II secretion system protein [Marinobacter aquaeolei VT8] gi|120325407|gb|ABM19722.1| type II secretion system protein [Marinobacter aquaeolei VT8] Length = 398 Score = 38.6 bits (88), Expect = 0.45, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 58/156 (37%), Gaps = 10/156 (6%) Query: 28 RAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87 R+G+ + DA+ + + + + V + GL ES S +R + + Sbjct: 74 RSGVSLKDAIDSL---TGGERAAAMQSVFDRWSSGLRQGESFSDALRASGVPVPEYLF-Q 129 Query: 88 ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 + +L G + ++L + K + +++ + + S V + F Sbjct: 130 LVKAGELTGEMGDSLQTAVSQMEYEKQIATEMKNALVYPA---ILCFSGVGAVLLVFTFV 186 Query: 148 SPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 P + N+L + G L +A A + G V M Sbjct: 187 VPQFQNLLEH---GDKLPWLAWAVLATGKWVNANMA 219 >gi|89897875|ref|YP_514985.1| general secretion pathway protein F [Chlamydophila felis Fe/C-56] gi|89331247|dbj|BAE80840.1| general secretion pathway protein F [Chlamydophila felis Fe/C-56] Length = 391 Score = 38.6 bits (88), Expect = 0.46, Method: Composition-based stats. Identities = 24/169 (14%), Positives = 62/169 (36%), Gaps = 6/169 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQ 59 ++ + +R ++ ++ +R+GLP+ ++++ + Q S +E Sbjct: 42 IREVAPRRVRVKNNELIVFSKQMLLLLRSGLPLYESLSSLRDQYQGQAMSGLLTAFMENL 101 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G +LS++++ F + + GNL L N+ +L +R+ M K+ Sbjct: 102 RSGGALSQAMAAYPDI-----FDNFYRSAILAGESVGNLEGCLQNIIVVLEEREQMSKKL 156 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168 A ++ T V + + + ++ ++ Sbjct: 157 TAALSYPIVLLVFSLAVVLFFLTGVIPSLKETFENMEPNTLTSIVFSLS 205 >gi|163841487|ref|YP_001625892.1| hypothetical protein RSal33209_2753 [Renibacterium salmoninarum ATCC 33209] gi|162954963|gb|ABY24478.1| hypothetical protein RSal33209_2753 [Renibacterium salmoninarum ATCC 33209] Length = 246 Score = 38.6 bits (88), Expect = 0.47, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 55/177 (31%), Gaps = 8/177 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI----- 69 + ++ +R+G A+ + + L LS S Sbjct: 65 EIAVLTRRVIALLRSGCH-EQALWRAARDAGESSNLWPALAKAAALAELGLSPSAAFRPV 123 Query: 70 --SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + + + + + V Q G L E L + D +M+A K Sbjct: 124 PNKSLSNNPSQRALVELAACLEVAEQSGAQLVEVLDRAAEHFDDSIDMQALRNTALAGPK 183 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A+A ++ LP Y +++L P G++ L L+ + M + Sbjct: 184 ATASLLSWLPLLGLGAGYLMGISPISILFGTPAGNLALLAGGTLTLLARLWMSWLAK 240 >gi|309808611|ref|ZP_07702503.1| type II secretion system F domain protein [Lactobacillus iners LactinV 01V1-a] gi|308168085|gb|EFO70211.1| type II secretion system F domain protein [Lactobacillus iners LactinV 01V1-a] Length = 332 Score = 38.6 bits (88), Expect = 0.47, Method: Composition-based stats. Identities = 21/161 (13%), Positives = 58/161 (36%), Gaps = 16/161 (9%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 LD + +S+ G + ++ ++ V +E +I+ ++ + + + Sbjct: 20 FLDYLQQSLNNGFSFNQSLKIL-----PHVWNEKVNIIQKLSSNIAQGN---DIGQSLVA 71 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 S + GNL E+L+ L++I+R + K+++ ++ Sbjct: 72 IGFSRTIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIKSEMAYP--------AVLI 123 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + +++ ++ A L+GI + Sbjct: 124 VMMVSLLIAMQTFLHSELSSDSSSSDFIFAIIVSLLGIFFI 164 >gi|300790607|ref|YP_003770898.1| hypothetical protein AMED_8803 [Amycolatopsis mediterranei U32] gi|299800121|gb|ADJ50496.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] Length = 238 Score = 38.2 bits (87), Expect = 0.49, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 41/131 (31%), Gaps = 3/131 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 LD++ +RAGLPV A+ + G + + LG E+ Sbjct: 97 LAGTLDLLAACLRAGLPVPSALEAVAGSAPAAASTALSSTAGLLALGSPPHEAW---APV 153 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + S+ G + A +L+ RD +A+ +A + + Sbjct: 154 QAAPGLGELAAAAIRTSRSGAAFAAAAGDLAGRFRDELATEAEERAERAGVALALPVGLC 213 Query: 136 LPFCVSTLVYF 146 L Sbjct: 214 FLPAFFCLGVL 224 >gi|22297663|ref|NP_680910.1| putatiave fimbrial assembly protein [Thermosynechococcus elongatus BP-1] gi|22293840|dbj|BAC07672.1| pilC [Thermosynechococcus elongatus BP-1] Length = 233 Score = 38.2 bits (87), Expect = 0.49, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 44/134 (32%), Gaps = 7/134 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 R+G+P+ ++ ++ + + + + R + G LS ++ + Sbjct: 102 FCRTFGSLSRSGVPILRSLEIVSATAGNQVISNAIDRAAKEVQTGGMLSLALQK------ 155 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + +T + + G L + L ++ D K ME A + G + Sbjct: 156 ERVFPVLATQMINVGEETGELDKMLMKVADFYEDEVEQAVKSLTSVMEPLMIAVLGGMVG 215 Query: 138 FCVSTLVYFTSPGY 151 + + + Sbjct: 216 SILVAMYLPMFKIF 229 >gi|73671137|ref|YP_307152.1| hypothetical protein Mbar_A3709 [Methanosarcina barkeri str. Fusaro] gi|72398299|gb|AAZ72572.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro] Length = 646 Score = 38.2 bits (87), Expect = 0.49, Method: Composition-based stats. Identities = 15/162 (9%), Positives = 48/162 (29%), Gaps = 7/162 (4%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 I+ R K +F ++L ++ R + G +A A E + I L Sbjct: 390 KKIRDRIKKMEQEFADSLFVLGRRISEGKAPEEAFAHTARTMEGSKIGEAFQEISMNLLS 449 Query: 63 LS-------LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + E + + + ++ L+ L++ + Sbjct: 450 MRTNLKAAIFDEDFGAFRHVYSERIRNTMLLFTESVHKNHEAAGASIIKLADHLKELGTV 509 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + +++ + ++ + + + + +++ Sbjct: 510 EERIRRSLYDVTSTMRSTAVIFAPLIAGITLALSEVITKILS 551 >gi|284173203|ref|ZP_06387172.1| hypothetical protein Ssol98_00900 [Sulfolobus solfataricus 98/2] gi|261601170|gb|ACX90773.1| Type II secretion system F domain protein [Sulfolobus solfataricus 98/2] Length = 658 Score = 38.2 bits (87), Expect = 0.50, Method: Composition-based stats. Identities = 24/177 (13%), Positives = 54/177 (30%), Gaps = 3/177 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + + P L I + G +S A+ + + R EF RV+ S+ Sbjct: 428 REINDVENSLPQFLRDITEFRKIGYDLSRAIKTLAEE--KRYRREFNRVLNEITKQDSMG 485 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 I+R F T + + + G + L L+ + K + + Sbjct: 486 IPITRAKINTRSWLGKFSLTTVQILIESGAVRPDLLEYLTEFTLNFIQSKKEAFSRMRAY 545 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGY-MNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + L + + + L + G + ++ +++ M Sbjct: 546 QVLGILTPLLLIATILIAIVIIDSFTIVTLPTNTVGLPQFPNIISQFILSPVILAEM 602 >gi|226325871|ref|ZP_03801389.1| hypothetical protein COPCOM_03684 [Coprococcus comes ATCC 27758] gi|225205995|gb|EEG88349.1| hypothetical protein COPCOM_03684 [Coprococcus comes ATCC 27758] Length = 281 Score = 38.2 bits (87), Expect = 0.50, Method: Composition-based stats. Identities = 18/136 (13%), Positives = 38/136 (27%), Gaps = 10/136 (7%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---------SDPVRSEF 52 + K R + + D+P + AG+ + I E Sbjct: 120 NNQKKTRKEQMMLDYPEIITEFTMLTGAGMTAKNVWKRIAEDYGITRGKTGRKREAYEEI 179 Query: 53 RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRD 111 + + G+ E R R L ++S + +SE L + + Sbjct: 180 WKTWQEMKSGIPEMECYERFARRCDLIPYMKMGALLSQNLKKGAKGISEMLRMEAVQALE 239 Query: 112 RKNMKAKVQALSMEAK 127 + +A+ + Sbjct: 240 DRKSRARQLGEEAGTR 255 >gi|296109004|ref|YP_003615953.1| Type II secretion system F domain protein [Methanocaldococcus infernus ME] gi|295433818|gb|ADG12989.1| Type II secretion system F domain protein [Methanocaldococcus infernus ME] Length = 345 Score = 38.2 bits (87), Expect = 0.51, Method: Composition-based stats. Identities = 22/173 (12%), Positives = 57/173 (32%), Gaps = 4/173 (2%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSE 67 + L + ++AG + + + + + + E +I + G++ + Sbjct: 169 KGEIKLQILLGLLYMTSLLKAGASLPEILTGLARSREYGVLSYEAALIIRDINSGMTFED 228 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME-- 125 ++ R + + + + + GNLS L L + K ++ Sbjct: 229 ALRRAIIRTTIPLLRKVFDQMII-GYNKGNLSLLLEKLYEEIVRESLSKLDTSKFMIQNL 287 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + +PF + S + ++N ML ++ G+ V Sbjct: 288 GNLAFGVGLIMPFSGLIMSAMISNQGFSGILNAVNFLMLNLGPILAIIFGVFV 340 >gi|239929827|ref|ZP_04686780.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672] Length = 263 Score = 38.2 bits (87), Expect = 0.51, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 18/59 (30%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 P A D++ + AG A + PV R LG + R+ Sbjct: 120 QLPLAADLLSACIAAGAGPVTAAQAVGEALGGPVGEALARGAAEVRLGGEPDAAWQRLA 178 >gi|223935104|ref|ZP_03627022.1| type II secretion system protein [bacterium Ellin514] gi|223895988|gb|EEF62431.1| type II secretion system protein [bacterium Ellin514] Length = 334 Score = 38.2 bits (87), Expect = 0.53, Method: Composition-based stats. Identities = 21/154 (13%), Positives = 52/154 (33%), Gaps = 10/154 (6%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 I + V +G+ + A+ +I R RV+E + G + ++++ Sbjct: 19 QIAQLVASGIGLISALQLIQRNPPSTAFRKHIERVLEHLNHGSTFTDAMRATG-----SW 73 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + F + ++ G L L D ++ ++ + + + Sbjct: 74 LPSFDVYLIEAAENSGRLDSVFKMLGDYYADTARLQKQMLSDLAYPALVLHMA----VFL 129 Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 L+ + G + + G ++ A F L+ Sbjct: 130 FPLIDYFKNGSGALFLIKTAGVIVPLYAIIFGLL 163 >gi|225387976|ref|ZP_03757700.1| hypothetical protein CLOSTASPAR_01708 [Clostridium asparagiforme DSM 15981] gi|225045958|gb|EEG56204.1| hypothetical protein CLOSTASPAR_01708 [Clostridium asparagiforme DSM 15981] Length = 351 Score = 38.2 bits (87), Expect = 0.53, Method: Composition-based stats. Identities = 17/160 (10%), Positives = 44/160 (27%), Gaps = 7/160 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + I + A +P+ + +A++ + + + + Sbjct: 13 QELSAFCLQIGLLLEAAVPLDEGLAIMAEDAGCEDEKQLLLYMAEGAELGDPFFKVLEDA 72 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 PL + ++ Q G L + + +LS + V+ ++ Sbjct: 73 GTFPL-----YVVRMAKLGQQSGTLDQMMKSLSDYYEKEYRLLVNVKNALTYPIMMVVML 127 Query: 134 GSLPFCVSTLVYFTSPGYMNVLIN--DPRGHMLLGVAAAF 171 + F + + V L P + + F Sbjct: 128 LVVLFVLFSKVMPVFDQVYEQLGAKMSPAARSAIRLGGLF 167 >gi|229174918|ref|ZP_04302438.1| ComG operon protein 2 [Bacillus cereus MM3] gi|228608586|gb|EEK65888.1| ComG operon protein 2 [Bacillus cereus MM3] Length = 315 Score = 38.2 bits (87), Expect = 0.55, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 44/132 (33%), Gaps = 7/132 (5%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + ++ GL V +A+ ++V Q + E R+ G L I++ Sbjct: 184 YFAAQLSGLLQGGLSVLEALTIMVEQHYHPFFQYEAGRIERQLIAGEPLQSIIAKSG--- 240 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + I Q GNL+ L + S + + K K + ++ I G + Sbjct: 241 ---YYEKELSYIITHGQANGNLAIELGDYSDHIMGKMEQKVKRMLVIIQPILFTCIGGIV 297 Query: 137 PFCVSTLVYFTS 148 ++ Sbjct: 298 VLMYLAMIMPMF 309 >gi|20090162|ref|NP_616237.1| hypothetical protein MA1298 [Methanosarcina acetivorans C2A] gi|19915147|gb|AAM04717.1| predicted protein [Methanosarcina acetivorans C2A] Length = 645 Score = 38.2 bits (87), Expect = 0.55, Method: Composition-based stats. Identities = 14/162 (8%), Positives = 47/162 (29%), Gaps = 7/162 (4%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-------V 55 I+ R + +F ++L ++ R + G +A A E Sbjct: 389 KKIRDRIKQMELEFADSLFVLGRRISEGKAPEEAFAHTSRTMEGSKIGEAFEEISMNLFS 448 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + T E + + + ++ L+ L++ + Sbjct: 449 MRTNLRDAIFDEEFGAFRHIYSERIRNTMLLFTESVHKNHEAAGASIIKLADHLKELSAV 508 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + +++ + ++ ++ + + + ++N Sbjct: 509 EERIRRSLYDVTSTMRSTAAIFAPLIAGITLALSEVITKILN 550 >gi|331694288|ref|YP_004330527.1| Type II secretion system F domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326948977|gb|AEA22674.1| Type II secretion system F domain protein [Pseudonocardia dioxanivorans CB1190] Length = 269 Score = 38.2 bits (87), Expect = 0.56, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 58/170 (34%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + AL I +RAG A+A I + + + + + Sbjct: 95 ELAEALARICDELRAGAHPGAALAGIDADGAAARAALRPALGAAELGETVPTALARAAAP 154 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 +V + ++ + G L+ LA ++ LR R +V+A +A+A ++ Sbjct: 155 AGLAADVDRVTAAWTLSDRHGVPLATVLAAVAADLRWRVEFGNRVRAELAGPRATATVLT 214 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 LP + VL + G +LLG G+ ++ Sbjct: 215 LLPLLGLAFGQLMGADPLGVLRDGLLGTLLLGCGTLLTAAGVAWSEHILR 264 >gi|15899402|ref|NP_344007.1| hypothetical protein SSO2679 [Sulfolobus solfataricus P2] gi|13816000|gb|AAK42797.1| Hypothetical protein SSO2679 [Sulfolobus solfataricus P2] Length = 662 Score = 38.2 bits (87), Expect = 0.56, Method: Composition-based stats. Identities = 24/177 (13%), Positives = 54/177 (30%), Gaps = 3/177 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + + P L I + G +S A+ + + R EF RV+ S+ Sbjct: 432 REINDVENSLPQFLRDITEFRKIGYDLSRAIKTLAEE--KRYRREFNRVLNEITKQDSMG 489 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 I+R F T + + + G + L L+ + K + + Sbjct: 490 IPITRAKINTRSWLGKFSLTTVQILIESGAVRPDLLEYLTEFTLNFIQSKKEAFSRMRAY 549 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGY-MNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + L + + + L + G + ++ +++ M Sbjct: 550 QVLGILTPLLLIATILIAIVIIDSFTIVTLPTNTVGLPQFPNIISQFILSPVILAEM 606 >gi|226325873|ref|ZP_03801391.1| hypothetical protein COPCOM_03686 [Coprococcus comes ATCC 27758] gi|225205997|gb|EEG88351.1| hypothetical protein COPCOM_03686 [Coprococcus comes ATCC 27758] Length = 55 Score = 38.2 bits (87), Expect = 0.57, Method: Composition-based stats. Identities = 6/55 (10%), Positives = 21/55 (38%) Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + +P + + + P +M L + G + + + + + ++ +V Sbjct: 1 MSVIPLGIIGYMRLSFPEFMAGLYGNLPGAVFMSICLGAYIAAWRLGCKIVEIEV 55 >gi|66476351|gb|AAY51449.1| pilin biogenesis protein [Microcystis aeruginosa PCC 7806] gi|159026048|emb|CAO86289.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 404 Score = 38.2 bits (87), Expect = 0.57, Method: Composition-based stats. Identities = 11/133 (8%), Positives = 38/133 (28%), Gaps = 5/133 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + R+G+P+ +++ ++ + V + + + + + P Sbjct: 273 FCRVFGTLTRSGVPILNSLDIVSNTVGNQVIANTIATAKREIQQGGMMSFALQKANVFPP 332 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G L + ++ D K +E I + Sbjct: 333 -----LAIQMISIGEETGELDTMMMKVADFYEDEVEQAVKALTSIIEPLMMVAIGVMVGT 387 Query: 139 CVSTLVYFTSPGY 151 + ++ + Sbjct: 388 ILVSMYLPMFKVF 400 >gi|325969463|ref|YP_004245655.1| type II secretion system protein [Vulcanisaeta moutnovskia 768-28] gi|323708666|gb|ADY02153.1| type II secretion system protein [Vulcanisaeta moutnovskia 768-28] Length = 276 Score = 38.2 bits (87), Expect = 0.58, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 70/182 (38%), Gaps = 7/182 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLS-- 64 RT+ F N L I+ V +G+ + + + + + + EF+ +++ G Sbjct: 87 RTSHFERYLANTLMIMTPLVASGVTLEELIDTLAIIERDPYIAREFKIILKDAREGGMDI 146 Query: 65 ---LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 L S++R+ + S + + + L L L L R ++ +V + Sbjct: 147 LTALRASLNRVPSRTYNEVFSLITETYLISANLADILMLKLEYLVRNKYNKLRSATQVLS 206 Query: 122 LSMEAKASAWIIGSLPFCVSTL-VYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L ME ++ + + + + P Y+ + P +L+ ++G ++ Sbjct: 207 LFMEVYLVTALLLPILLVLIIVTISPLGPIYLGSITLSPTLVLLITTLIYSPVMGYVMYL 266 Query: 181 LM 182 L+ Sbjct: 267 LI 268 >gi|237786541|ref|YP_002907246.1| hypothetical protein ckrop_1995 [Corynebacterium kroppenstedtii DSM 44385] gi|237759453|gb|ACR18703.1| hypothetical protein ckrop_1995 [Corynebacterium kroppenstedtii DSM 44385] Length = 158 Score = 38.2 bits (87), Expect = 0.58, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 50/137 (36%), Gaps = 4/137 (2%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 LD++ + GLPV AV + ++ +G+ + + L Sbjct: 24 LDLVKACLSCGLPVGAAVGAVADSGGSQFVDVWKGTANRLAMGVDSDIAWALCAENEVLG 83 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IGSLPF 138 + + + ++ G L+ + LS +R R +A +A + + LP Sbjct: 84 DFARRARR---SARSGAQLAADIGALSMHMRHRATDQAVAEAEKASVYVALPLSFCFLPA 140 Query: 139 CVSTLVYFTSPGYMNVL 155 ++ + + G ++ L Sbjct: 141 FIAVGLVPIAIGLLSGL 157 >gi|307265042|ref|ZP_07546603.1| Type II secretion system F domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306920027|gb|EFN50240.1| Type II secretion system F domain protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 249 Score = 38.2 bits (87), Expect = 0.58, Method: Composition-based stats. Identities = 19/145 (13%), Positives = 48/145 (33%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 ++ P AL++ + + G+ + + IV VR G SL ++++ Sbjct: 103 EEELPAALEVFISGLEVGMNKENIIGYIVRTRKGVVRDLLYEAQVRIDTGSSLKDALTFA 162 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 F ++ + + ++ E L L + +R + +A +++ I Sbjct: 163 ADKSLNDHFKRFVKAVTGEYESVKDMRENLEELLEEVEERNYNQKIERAGTLDNSLFFPI 222 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIN 157 + + + N Sbjct: 223 FLGYFVPILVMFALPFVISLRSFFN 247 >gi|304438674|ref|ZP_07398612.1| possible general secretion pathway protein F [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368323|gb|EFM22010.1| possible general secretion pathway protein F [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 407 Score = 38.2 bits (87), Expect = 0.59, Method: Composition-based stats. Identities = 14/140 (10%), Positives = 34/140 (24%), Gaps = 3/140 (2%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + GLP+ A+ + S + Sbjct: 72 FFQELSALLAVGLPLHRALERLRDGVGATSSSGRLLHALHHAAMQGM---PLSQAMETKR 128 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 Q S + + G+L L + L + M+ + + + + Sbjct: 129 QIFSPVLIGMVRAGEESGSLDVVLGAAASFLTEEYRMREALWSALLYPLFLLAAVVLSIV 188 Query: 139 CVSTLVYFTSPGYMNVLIND 158 ++ + + L D Sbjct: 189 LMTVFILPIFAALLADLHAD 208 >gi|269958190|ref|YP_003327978.1| type II secretion system protein [Xylanimonas cellulosilytica DSM 15894] gi|269306871|gb|ACZ32420.1| type II secretion system protein [Xylanimonas cellulosilytica DSM 15894] Length = 303 Score = 38.2 bits (87), Expect = 0.62, Method: Composition-based stats. Identities = 18/159 (11%), Positives = 47/159 (29%), Gaps = 5/159 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +K +F D++ G A+ + + V + Sbjct: 149 VRDDARKARVEFGRALGAYTDLVALERLGGSGTRQAMELAAEVGDNWVFRRLSEELARSR 208 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + +++ + + L E+ + ++ + + + L S LR A Sbjct: 209 WSGLAPWDAMHVLADELGLPELDDLADIMRLSKEGSQ-VYAQLRARSEGLRSAMLNAA-- 265 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158 A I + LV +P + ++ + Sbjct: 266 -LGKSNAAGERMTIPMALLSIMFLVILITPSLLRLMGGE 303 >gi|257389095|ref|YP_003178868.1| hypothetical protein Hmuk_3056 [Halomicrobium mukohataei DSM 12286] gi|257171402|gb|ACV49161.1| conserved hypothetical protein [Halomicrobium mukohataei DSM 12286] Length = 564 Score = 37.8 bits (86), Expect = 0.62, Method: Composition-based stats. Identities = 21/178 (11%), Positives = 57/178 (32%), Gaps = 6/178 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI-ETQHLGLSLSES 68 P+AL +I R V G AV + + V + LG+ L + Sbjct: 346 EAVEAGLPDALSLIGRRVTRGTATERAVEDVATAVPGATGTVLAEVAGRQRRLGVDLRTA 405 Query: 69 I---SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + +P + ++++++ ++ G +AL ++ L+ + + + Sbjct: 406 FVGERGALATVPSERAESAASLLALSAREGRPAGDALLAMADHLQTIDEAEQANRRAVAQ 465 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + ++ + M P G + + +++ ++ Sbjct: 466 VTNTLSNTAAVFAPLVGGATVALSAAMGS--AGPLGGSVATADLGLAVGWYVLVLAIV 521 >gi|86130928|ref|ZP_01049527.1| general secretion pathway protein F [Dokdonia donghaensis MED134] gi|85818339|gb|EAQ39499.1| general secretion pathway protein F [Dokdonia donghaensis MED134] Length = 376 Score = 37.8 bits (86), Expect = 0.65, Method: Composition-based stats. Identities = 18/160 (11%), Positives = 52/160 (32%), Gaps = 11/160 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + + +G+ + DA+ +I + F + + + M +E + Sbjct: 47 LSVLLNSGIRLKDALYLISESQKKKEDALFFKKLRDHIIAGD-----DFSKVLMGQKEFT 101 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + + G L+ ++LS + + + + + ++G+ V Sbjct: 102 RYEEHSIRIGEQSGTLTSVSSSLSDFYKRKNEQRRNIVSALTYPA---IVLGTAMLAVIF 158 Query: 143 LVYFTSPGYMNVLINDPRGHMLLG--VAAAFMLIG-IMVM 179 ++ F P + + + + V A +G + Sbjct: 159 MLQFVVPMFKDTFRQNNVELPAITKAVIAVSEGVGNYGWI 198 >gi|149174856|ref|ZP_01853480.1| fimbrial assembly protein PilC [Planctomyces maris DSM 8797] gi|148846193|gb|EDL60532.1| fimbrial assembly protein PilC [Planctomyces maris DSM 8797] Length = 507 Score = 37.8 bits (86), Expect = 0.68, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 44/139 (31%), Gaps = 7/139 (5%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM-VRY 75 P+ L I +S+ A A++ + V + + Sbjct: 374 PDCLRQIAQSISAQQQPQIALSSASQ------YHLWADVRIRSESVKNRVNQGENLWASL 427 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + +S + V ++ GNL E L L+ + R+N K +V A ++ + Sbjct: 428 QHAKIISRSEAALCVTAERVGNLPEVLRALALSIEQRRNRKLRVLADLLKPVIVCTLGLV 487 Query: 136 LPFCVSTLVYFTSPGYMNV 154 + V L + Sbjct: 488 VGLFVIALFIPIVQLIFDF 506 >gi|86742016|ref|YP_482416.1| type II secretion system protein [Frankia sp. CcI3] gi|86568878|gb|ABD12687.1| type II secretion system protein [Frankia sp. CcI3] Length = 294 Score = 37.8 bits (86), Expect = 0.68, Method: Composition-based stats. Identities = 8/71 (11%), Positives = 20/71 (28%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + R + LD++ + GL + A+ +E R ++ Sbjct: 137 LHRRASARRQETRLAVAAYLDLVRILLVGGLSLHTALQTAADAGRGWAFTEIRAALQWAR 196 Query: 61 LGLSLSESISR 71 ++ Sbjct: 197 ARHVPPDAGLN 207 >gi|330947086|gb|EGH47866.1| type II secretion system protein [Pseudomonas syringae pv. pisi str. 1704B] gi|330948094|gb|EGH48354.1| type II secretion system protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 51 Score = 37.8 bits (86), Expect = 0.69, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 25/49 (51%) Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +P ++ +P Y+ + +D G ++L VA A + G +V+ M+ Sbjct: 1 MPISMAGYFLAVNPSYLLHMWDDESGKIMLSVAFALQVTGCVVLWRMLR 49 >gi|306821269|ref|ZP_07454881.1| type IV pilus-assembly protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550669|gb|EFM38648.1| type IV pilus-assembly protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 335 Score = 37.8 bits (86), Expect = 0.69, Method: Composition-based stats. Identities = 16/148 (10%), Positives = 46/148 (31%), Gaps = 10/148 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + ++G+P+ ++ ++ + ++ + V + + G LS+++S Sbjct: 12 FFESLYELTKSGIPLLKSMDIV----NTKNKAMVQEVKDQLNNGELLSKALSDTGL---- 63 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 S + I + GN L + + + + I L Sbjct: 64 --FSDTALSIIKTGEWTGNFELCFEKLYKYYERMNETRKNIIISLFYPAILVFSIFFLLI 121 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLG 166 ++ ++ N L+ Sbjct: 122 FINFYFIPQISSLYDMNKNTSAFVSLMF 149 >gi|238854828|ref|ZP_04645158.1| competence protein [Lactobacillus jensenii 269-3] gi|260664115|ref|ZP_05864968.1| competence protein [Lactobacillus jensenii SJ-7A-US] gi|282933906|ref|ZP_06339254.1| competence protein [Lactobacillus jensenii 208-1] gi|313472331|ref|ZP_07812823.1| competence protein [Lactobacillus jensenii 1153] gi|238832618|gb|EEQ24925.1| competence protein [Lactobacillus jensenii 269-3] gi|239529813|gb|EEQ68814.1| competence protein [Lactobacillus jensenii 1153] gi|260562001|gb|EEX27970.1| competence protein [Lactobacillus jensenii SJ-7A-US] gi|281301995|gb|EFA94249.1| competence protein [Lactobacillus jensenii 208-1] Length = 333 Score = 37.8 bits (86), Expect = 0.70, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 59/171 (34%), Gaps = 16/171 (9%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +K + L+ + S++ GL +++++ V + + + + L Sbjct: 9 RKDKLTAQEQL-EFLEYLAMSLKNGLSLAESLQV--------MPALWSKKQMLLKKITYL 59 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + + + + + GNL+E L+ L I R ++ K++A Sbjct: 60 MKQGVNFSQILQQMGFGKTIASQVDLAMMQGNLNECLSQLVIINRLKEQQVKKLKAELSY 119 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 +L + ++ F + L + L+ + M +GI Sbjct: 120 P-------ITLFVLMIFMLLFMQNFLSSQLGQEDGTANLVFASLIIMALGI 163 >gi|78045324|ref|YP_361574.1| putative PilR-like integral membrane protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78033828|emb|CAJ19827.1| putative PilR-like integral membrane protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 365 Score = 37.8 bits (86), Expect = 0.70, Method: Composition-based stats. Identities = 15/129 (11%), Positives = 43/129 (33%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L + + AG+P+ A+ + ++ +R + G + +++ P Sbjct: 238 FLLNVSALLAAGIPLEQALIDMARYANAYLRERIDDTLRGIKTGANFGQALHFTEHDFPD 297 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 ++ ++ + L + ++NMK ++ ++ I + Sbjct: 298 KDTVRNVKTLAEKKGFEVALEKFTKR-----WLKQNMKLMERSAAILRLIMLLIGAYVIV 352 Query: 139 CVSTLVYFT 147 + VY Sbjct: 353 TMFQGVYGI 361 >gi|261417704|ref|YP_003251386.1| type II secretion system protein F [Geobacillus sp. Y412MC61] gi|319767487|ref|YP_004132988.1| type II secretion system F domain protein [Geobacillus sp. Y412MC52] gi|261374161|gb|ACX76904.1| Type II secretion system F domain protein [Geobacillus sp. Y412MC61] gi|317112353|gb|ADU94845.1| Type II secretion system F domain protein [Geobacillus sp. Y412MC52] Length = 342 Score = 37.8 bits (86), Expect = 0.70, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 54/154 (35%), Gaps = 12/154 (7%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + R + G P+ A+ + Q+ R E R ++ GL L ++ + Sbjct: 14 FFTRLGRLLERGYPLGQALEFLAIQAPTHRRLEIERCLQQLRAGLPLFAAVEALS----- 68 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 V + + ++ G+L +A L + +++ S +++ L Sbjct: 69 --VDRMAVNLLFFAERHGDLPRGMAETGETLAQKARFHEQLRRFSRYPM---FLLSLLII 123 Query: 139 CVSTLVYFTSPGY--MNVLINDPRGHMLLGVAAA 170 + + ++ P + + RGH +A Sbjct: 124 MLVLMEWWLLPQFERAAAAFSPQRGHTAWLLAVV 157 >gi|83592054|ref|YP_425806.1| Mg2+ transporter protein, CorA-like [Rhodospirillum rubrum ATCC 11170] gi|83574968|gb|ABC21519.1| Mg2+ transporter protein, CorA-like [Rhodospirillum rubrum ATCC 11170] Length = 346 Score = 37.8 bits (86), Expect = 0.70, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 52/146 (35%), Gaps = 6/146 (4%) Query: 40 IVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL----QEVSFFSTVISVQSQLG 95 + + + + ++ + +++R++ + Q+ ++ ++ Sbjct: 198 VEEEIEEGLHQSRIDIVSLRRYLAPQQAALTRLMGHPHPALSAQDREILGAALATFTRYV 257 Query: 96 GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 +L ++L + +LRDR +A+ + K + LP T + + G M Sbjct: 258 EDL-DSLREQAALLRDRIQQRAQQRINRSIYKMTLLAGIFLPLTFFTGLLGVNLGGM-PG 315 Query: 156 INDPRGHMLLGVAAAFMLIGIMVMRL 181 P G +L + IG + Sbjct: 316 AQSPFGFWILVGLLVALAIGEFLYIR 341 >gi|326383472|ref|ZP_08205159.1| Type II secretion system F domain-containing protein [Gordonia neofelifaecis NRRL B-59395] gi|326197878|gb|EGD55065.1| Type II secretion system F domain-containing protein [Gordonia neofelifaecis NRRL B-59395] Length = 188 Score = 37.8 bits (86), Expect = 0.71, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 3/137 (2%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 D + +RAGLP++ A AV + +RS F R + LG ++ + Sbjct: 51 DTLAVCLRAGLPLATAAAVAAETAPPELRSSFTRAADLLALGADPDQAW--APVDADSVD 108 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IGSLPFC 139 + + +IS S+ G L++++ + R R + A K S + + LP Sbjct: 109 FAELAALISRASRAGSALADSVGGFADATRRRAENASLEAAERAGVKISGPLGLCFLPAF 168 Query: 140 VSTLVYFTSPGYMNVLI 156 V + G + L+ Sbjct: 169 VCLGIVPVVIGLASSLL 185 >gi|159905381|ref|YP_001549043.1| flagellar assembly protein J [Methanococcus maripaludis C6] gi|159886874|gb|ABX01811.1| type II secretion system protein [Methanococcus maripaludis C6] Length = 558 Score = 37.8 bits (86), Expect = 0.72, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 66/181 (36%), Gaps = 13/181 (7%) Query: 15 DFPNALDIIVRSVRA-GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 +FP+ L + SV A G ++D++ + P+ + + + + ++ ++ Sbjct: 331 NFPDFLRSLGDSVSAKGGGMTDSLEYLSSNDFGPLTKDLEGLYKRVSIRVNSQKAWRYFG 390 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + FS + + LGGN A + + R N++ K + S+ + Sbjct: 391 YDTCSYMIQLFSEMFERCTFLGGNAGLAAHMIGKNFRKIINLR-KAKYQSVSQFSGIMYG 449 Query: 134 GSLPFCVSTLVYFTSPGYMNVLIND---PRGHMLLG-------VAAAFMLI-GIMVMRLM 182 S ++ +N L P + L + LI G++V+ + Sbjct: 450 LSGGMALTLYASAGVADMVNGLYTTLDIPDTMISLVNIITPEDFSLIAYLIYGVLVIYSI 509 Query: 183 I 183 + Sbjct: 510 V 510 >gi|85704681|ref|ZP_01035783.1| general secretion pathway protein F [Roseovarius sp. 217] gi|85671089|gb|EAQ25948.1| general secretion pathway protein F [Roseovarius sp. 217] Length = 403 Score = 37.8 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 49/177 (27%), Gaps = 12/177 (6%) Query: 4 LIKKRTAKFLDDF-PNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHL 61 L + R + D + + + L A+ I +S + + Sbjct: 53 LARSRRTRLNADMRAVFTRQMAVLLSSDLSAEMALETIRSSGTSPVIEAAAAEAKAALMD 112 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G LS S+ + P F + G+++ L+ L +A++ Sbjct: 113 GQPLSVSLDKANAGFP-----RFYIAAVRAGETSGDVAVVFEGLADYLETVGADRAQLAT 167 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + ++ L+ +P + R L M I + Sbjct: 168 ALIYPA---FVAAVSLLVCGILMVNVAPEIAAMFAVSGRELPPLTQVV--MAISDWI 219 >gi|297529397|ref|YP_003670672.1| type II secretion system F domain protein [Geobacillus sp. C56-T3] gi|297252649|gb|ADI26095.1| Type II secretion system F domain protein [Geobacillus sp. C56-T3] Length = 342 Score = 37.8 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 54/154 (35%), Gaps = 12/154 (7%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + R + G P+ A+ + Q+ R E R ++ GL L ++ + Sbjct: 14 FFTRLGRLLERGYPLGQALEFLAIQAPTHRRLEIERCLQQLRAGLPLFAAVEALS----- 68 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 V + + ++ G+L +A L + +++ S +++ L Sbjct: 69 --VDRMAVNLLFFAERHGDLPRGMAETGETLAQKARFHEQLRRFSRYPM---FLLSLLII 123 Query: 139 CVSTLVYFTSPGY--MNVLINDPRGHMLLGVAAA 170 + + ++ P + + RGH +A Sbjct: 124 MLVLMEWWLLPQFERAAAAFSPQRGHTAWLLAVI 157 >gi|281415508|ref|ZP_06247250.1| type II secretion system protein F [Micrococcus luteus NCTC 2665] Length = 239 Score = 37.8 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 36/141 (25%), Gaps = 7/141 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 LD++ + AG + A+ + + + + Sbjct: 105 VLDVLAALLSAGRSLPAALDDLGRTLPGARGLRATAALLLWGRDWDEAWAGLD-----TD 159 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G + LA + +R + + A + + L Sbjct: 160 PVWIETAARLRPLHRSGMAGARTLAETAAAVRQQTRRADERAAEELAVCLVMPLGLCLLP 219 Query: 139 CVSTLVYFTSPGYMNVLINDP 159 + P M +L P Sbjct: 220 AFVC--WGVVPVVMALLRAGP 238 >gi|228916876|ref|ZP_04080439.1| ComG operon protein 2 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842799|gb|EEM87884.1| ComG operon protein 2 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 315 Score = 37.8 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 7/132 (5%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + GL V +A+ +++ Q + E R+ G L I++ Sbjct: 184 YFATQLSGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIAGEPLQSIIAKSG--- 240 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + I Q GNL+ L + S ++ ++ K K + ++ I G + Sbjct: 241 ---YYEEELSYIITHGQANGNLAIELGDYSDLIMEKMEQKMKRMLVIIQPILFTCIGGIV 297 Query: 137 PFCVSTLVYFTS 148 ++ Sbjct: 298 VLMYLAMIMPMF 309 >gi|32477191|ref|NP_870185.1| general secretion pathway protein F- pilus protein [Rhodopirellula baltica SH 1] gi|32447742|emb|CAD77260.1| general secretion pathway protein F-putative pilus protein [Rhodopirellula baltica SH 1] Length = 346 Score = 37.8 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 19/175 (10%), Positives = 46/175 (26%), Gaps = 16/175 (9%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG + + S R ++ E G ++SE Sbjct: 13 DFCRRFGVGLGAGADLLKLLESEAKHGSAQQRVAMTKIREGAKDGHAISEM-----MRHQ 67 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 V++ + G L + LS + ++ I + Sbjct: 68 KPFFPPLMVVMTRVGETTGKLERTMLALSEHYAQQYTLRQNFLRAIAWPGLQLLIGIGVV 127 Query: 138 FCVSTLVYFTSP-------GYMNVLINDPRGHML----LGVAAAFMLIGIMVMRL 181 + ++ + + + P+G ++ + V A +R Sbjct: 128 SLMIWIMGVLTAPTGGQMTDMLGFGLRGPKGVLIFWSYIAVVVAVFGGIYFAVRK 182 >gi|312126627|ref|YP_003991501.1| hypothetical protein Calhy_0384 [Caldicellulosiruptor hydrothermalis 108] gi|311776646|gb|ADQ06132.1| hypothetical protein Calhy_0384 [Caldicellulosiruptor hydrothermalis 108] Length = 252 Score = 37.8 bits (86), Expect = 0.74, Method: Composition-based stats. Identities = 20/155 (12%), Positives = 54/155 (34%), Gaps = 1/155 (0%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQH 60 K + + R K + + ++AGL + AVI + F + T Sbjct: 92 KEIERTRKNKLRSSIADIALMCELGLKAGLSLDRIFAVIAETIVEPRYKDAFLQAAATYK 151 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 ++ + + + + L E+ + ++G + ++L S++ K + + Sbjct: 152 TTHNIEDCFTILRSQLDLPELEILKRALLEVEKVGLSGIQSLEVFSQVETMNKIEQIYKK 211 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + I+ + +S + + L Sbjct: 212 SDKARSYTTYAIVAMVFALISIYFFPLFKLATDTL 246 >gi|15920738|ref|NP_376407.1| hypothetical protein ST0521 [Sulfolobus tokodaii str. 7] gi|15621521|dbj|BAB65516.1| 634aa long hypothetical protein [Sulfolobus tokodaii str. 7] Length = 634 Score = 37.8 bits (86), Expect = 0.76, Method: Composition-based stats. Identities = 17/182 (9%), Positives = 60/182 (32%), Gaps = 2/182 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQ 59 + ++ R + + + +R+GL + + + + S + +++ Sbjct: 125 VSQKVESRRIGVEAETLAFSALFLVFLRSGLSPRLLFENLSKTKAFNYMNSIAKYIVKRI 184 Query: 60 HLGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + S+ ++I + +P + + + G + E + + + + ++A Sbjct: 185 NFLGESVEKAIDESTKIVPSKLYNDLMVTYITAIRTGAPVFETMQSKIKDILKNMELQAS 244 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 A ++ ++ +S + L P G + ++ I+ Sbjct: 245 KAADNLSGVGEGYVTWLASGFISFFLILILEAVFPQLHVLPIGILGAFAVLGIPIVNILF 304 Query: 179 MR 180 + Sbjct: 305 VW 306 Score = 37.0 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 43/122 (35%), Gaps = 1/122 (0%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 L I RAGL + + +++ RRV +LG+ + ++ + + Sbjct: 415 FLRAIGEGSRAGLSPEAVIKNLKDSKELGKLQNILRRVYAYINLGIPIKDAFRKASDIII 474 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 T ++ ++G E++ L+ L + ++ + A ++ L Sbjct: 475 DFSTKIAFTSLADMIEIGSLTPESVETLADQLDAQIRIRREYYAKIKILLYMPYVGSILA 534 Query: 138 FC 139 Sbjct: 535 LI 536 >gi|307945538|ref|ZP_07660874.1| insertion sequence transposase protein [Roseibium sp. TrichSKD4] gi|307946349|ref|ZP_07661684.1| insertion sequence transposase protein [Roseibium sp. TrichSKD4] gi|307770013|gb|EFO29239.1| insertion sequence transposase protein [Roseibium sp. TrichSKD4] gi|307771411|gb|EFO30636.1| insertion sequence transposase protein [Roseibium sp. TrichSKD4] Length = 410 Score = 37.8 bits (86), Expect = 0.77, Method: Composition-based stats. Identities = 14/114 (12%), Positives = 30/114 (26%), Gaps = 1/114 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++R L+ + +I + G PV A R L Sbjct: 32 KKRRRRLTVLNQLDDFNRLIAALLDYGRPVRAAFEATGNYHRALAYRL-GRAGFEVKLVS 90 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 S++ + +R + + + GN + D + + Sbjct: 91 SVALARTREALNNSWDKNDPKDAQVILHMMQIGNEQFYHDPMLCGTNDLQELSK 144 >gi|300857636|ref|YP_003782619.1| hypothetical protein cpfrc_00219 [Corynebacterium pseudotuberculosis FRC41] gi|300685090|gb|ADK28012.1| hypothetical protein cpfrc_00219 [Corynebacterium pseudotuberculosis FRC41] Length = 207 Score = 37.8 bits (86), Expect = 0.77, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 8/129 (6%) Query: 20 LDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSE---FRRVIETQHLGLSLSESISRMVR 74 LD+ V++GL S + + +SS + V +G+ + + Sbjct: 67 LDLFAACVQSGLTPSQSAFAVAATEESSPRDARVRSGWLEVAMMLEMGMPAERAWQSLAE 126 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + TV + G L+EA L+R LR R + + +A + + Sbjct: 127 ---HPALGDLVTVARASERSGATLAEACERLARQLRARASDLSLARAERAGVLIALPLTV 183 Query: 135 SLPFCVSTL 143 L Sbjct: 184 CFLPAFFLL 192 >gi|256396007|ref|YP_003117571.1| type II secretion system protein [Catenulispora acidiphila DSM 44928] gi|256362233|gb|ACU75730.1| type II secretion system protein [Catenulispora acidiphila DSM 44928] Length = 297 Score = 37.8 bits (86), Expect = 0.77, Method: Composition-based stats. Identities = 14/127 (11%), Positives = 43/127 (33%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 LD ++ G + A+ R+ + +++ + + + + + Sbjct: 161 FLDQAATTLAGGAGIEQALVAAADGHGPVFRAIRDSITDSRLAREPAWPHLDALGKRLGI 220 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 +E+ + ++ G + ++A +R +R+R+ + + + Sbjct: 221 RELCELAAACTLAGAEGAKVKSSIAAKARSMREREFAAQTEAVEADSERLAMPGGLLGMS 280 Query: 139 CVSTLVY 145 V L Y Sbjct: 281 FVCFLTY 287 >gi|218905379|ref|YP_002453213.1| comG operon protein 2 [Bacillus cereus AH820] gi|218539897|gb|ACK92295.1| comG operon protein 2 [Bacillus cereus AH820] Length = 343 Score = 37.8 bits (86), Expect = 0.77, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 7/132 (5%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + GL V +A+ +++ Q + E R+ G L I++ Sbjct: 212 YFATQLSGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIAGEPLQSIIAK----- 266 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + + I Q GNL+ L + S ++ ++ K K + ++ I G + Sbjct: 267 -SEYYEEELSYIITHGQANGNLAIELGDYSDLIMEKMEQKIKRMLVIIQPILFTCIGGIV 325 Query: 137 PFCVSTLVYFTS 148 ++ Sbjct: 326 VLMYLAMIMPMF 337 >gi|322371097|ref|ZP_08045649.1| type II secretion system protein [Haladaptatus paucihalophilus DX253] gi|320549087|gb|EFW90749.1| type II secretion system protein [Haladaptatus paucihalophilus DX253] Length = 570 Score = 37.8 bits (86), Expect = 0.78, Method: Composition-based stats. Identities = 23/183 (12%), Positives = 58/183 (31%), Gaps = 12/183 (6%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR---RVIETQH 60 L++ R D +AL ++ R V+ GL V A+ + + F R+ Sbjct: 345 LVRNRVRAVEADLTDALYLVGRRVKEGLAVETAIVAAADEIGGETGAVFERATRIQRQLR 404 Query: 61 LGLSLSESISRMVRYM-PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 +G+ S P ++++ + G A+ ++ L D ++++ + Sbjct: 405 MGVRESFLGDYGALSTVPSPRARSAVALLALAADEGRPAGGAVLAMADHLDDLQSVEREA 464 Query: 120 QALSMEAK--------ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 + + ++ ++ + + + D G + Sbjct: 465 RRELSQVTETLRHTAAIFGPLVSGATVALAGGMSGMGGSFGSAFPVDVLGLAVGIYVLCL 524 Query: 172 MLI 174 I Sbjct: 525 SAI 527 >gi|189424037|ref|YP_001951214.1| type II secretion system protein [Geobacter lovleyi SZ] gi|189420296|gb|ACD94694.1| type II secretion system protein [Geobacter lovleyi SZ] Length = 387 Score = 37.8 bits (86), Expect = 0.78, Method: Composition-based stats. Identities = 11/137 (8%), Positives = 37/137 (27%), Gaps = 3/137 (2%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 + L I ++AG+P+S + + + Sbjct: 48 KAKRKELAAVLVAIGDLLQAGVPLSKTLETTIQSLPRASSLITILNAIKTAVQQGRE--- 104 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + + + G L+E+L ++ + + + +++++ Sbjct: 105 LSSAMTAYHSVFGSTTISMIQAGEKSGRLAESLLGAAQYITNIEASQSEMKKTLSYPLVI 164 Query: 130 AWIIGSLPFCVSTLVYF 146 + + +V Sbjct: 165 FIVSVIALVVNTQVVIP 181 >gi|159041006|ref|YP_001540258.1| hypothetical protein Cmaq_0423 [Caldivirga maquilingensis IC-167] gi|157919841|gb|ABW01268.1| hypothetical protein Cmaq_0423 [Caldivirga maquilingensis IC-167] Length = 307 Score = 37.8 bits (86), Expect = 0.80, Method: Composition-based stats. Identities = 19/176 (10%), Positives = 61/176 (34%), Gaps = 4/176 (2%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 + P + +I + GL +++ + + Q R R+ + LS ++ Sbjct: 83 ITGELPIFIRVIRDGLSTGLTITETINLTFKQGGVLARELGGRLRLSVVGPGELSAALMG 142 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEAL----ANLSRILRDRKNMKAKVQALSMEAK 127 + + + + S V+ + G +E L L ++ + + ++ A Sbjct: 143 LAHELNNRYLELASIVLESALRSGTKAAEVLDLAYRELDNVVVNELDKVNSLKPYIALAY 202 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 I L + ++ + +++ ++ + + +I + + ++ Sbjct: 203 TIIIIYVFLGSVILAILIPRLISVTSTIVSSLPTGLISFGSLSINVINSLFVYSIM 258 >gi|307295329|ref|ZP_07575168.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] gi|306878832|gb|EFN10051.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] Length = 287 Score = 37.4 bits (85), Expect = 0.81, Method: Composition-based stats. Identities = 21/154 (13%), Positives = 51/154 (33%), Gaps = 6/154 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSES 68 + +FP LD+++ + +G+ + I + ++ G+ + Sbjct: 135 IMAEFPFLLDLMLMMLESGVSLDQCFRSIARDEAIAVPHHARLIAMLVADLERGMRYDLA 194 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + R + + + + G L+ AL R R+ M+A+ M Sbjct: 195 LDRWAARVAVSGARELAALFRQALFQGVELAPALREFVREFTQRRVMRAREA---MGGIT 251 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162 ++ + F + L + + + RG Sbjct: 252 VRMVVLMILFFMPALFVVLGGPPVVAIFDTLRGI 285 >gi|260886328|ref|ZP_05897591.1| general secretion pathway protein F [Selenomonas sputigena ATCC 35185] gi|330839698|ref|YP_004414278.1| Type II secretion system F domain protein [Selenomonas sputigena ATCC 35185] gi|260864047|gb|EEX78547.1| general secretion pathway protein F [Selenomonas sputigena ATCC 35185] gi|329747462|gb|AEC00819.1| Type II secretion system F domain protein [Selenomonas sputigena ATCC 35185] Length = 397 Score = 37.4 bits (85), Expect = 0.81, Method: Composition-based stats. Identities = 18/140 (12%), Positives = 45/140 (32%), Gaps = 8/140 (5%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSE 67 + + D + + +G + +A+A G + + + F R G +L+ Sbjct: 256 RLRLDLELMTLFDTLAVLMESGSALHEALAASEGVVQNRFLAALFSRTRREVERGGTLAA 315 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +++ V + + G L+ L + R M+A+ +E Sbjct: 316 ALA-------GSVVPPLVWELVRAGEHTGELAAMLEKAADFCRFAGEMRAERMEAMLEPL 368 Query: 128 ASAWIIGSLPFCVSTLVYFT 147 ++ + V + Sbjct: 369 LVLFLGAVVGTVVLAVALPL 388 Score = 37.0 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 57/171 (33%), Gaps = 6/171 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 HL ++R A + + AGL ++++ ++ + R+ + G Sbjct: 49 HLARRRAADRKYAMV-FCRELALMLAAGLAANESLQLLAADAPQKRRAMLSDMARRMAHG 107 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +L+E++++ P + + + GG+L L L+ ++ K+Q Sbjct: 108 ATLAEAMAQHGEVFPP-----AISSLVRAGEAGGSLEPLLKRLADKEEKSWRVREKLQTA 162 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + A + V ++ L + L + + Sbjct: 163 LVYPALLALAAMFAVTFIFIFVLPNFVHMLDGLAVELPLPTRLVLGIGSLF 213 >gi|332098317|gb|EGJ03290.1| transport protein hofC domain protein [Shigella dysenteriae 155-74] Length = 207 Score = 37.4 bits (85), Expect = 0.81, Method: Composition-based stats. Identities = 13/110 (11%), Positives = 31/110 (28%), Gaps = 16/110 (14%) Query: 88 ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 + +L G L E L+R + ++ + KV++ + + + V Sbjct: 1 MIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIMVVVAMLHFVLPE 60 Query: 148 SPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIMVMRL 181 + G +L+ + ++MR Sbjct: 61 FAAIYKTFNTPLPALTQGIMTLADFSGKWGWLLVLFGFLLAIANKLLMRR 110 >gi|124021732|ref|YP_001016039.1| pili biogenesis protein [Prochlorococcus marinus str. MIT 9303] gi|123962018|gb|ABM76774.1| pili biogenesis protein [Prochlorococcus marinus str. MIT 9303] Length = 426 Score = 37.4 bits (85), Expect = 0.83, Method: Composition-based stats. Identities = 13/135 (9%), Positives = 41/135 (30%), Gaps = 5/135 (3%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 I +RAG+P+ ++ + + + + S+ T L + Sbjct: 293 AQFCRIFSSLIRAGVPILMSLEIASETAGNAIISDAILESRTLVQEGVL-----LSAALI 347 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + + + + + G + + L+ ++ D + K +E + + Sbjct: 348 RQKVLPDMALNMLAIGEETGEMDQMLSKVADFYEDEVSTSVKALTSMLEPAMIVVVGVIV 407 Query: 137 PFCVSTLVYFTSPGY 151 + + + Sbjct: 408 GSILLAMYLPMFTVF 422 >gi|291525764|emb|CBK91351.1| hypothetical protein EUR_23630 [Eubacterium rectale DSM 17629] Length = 290 Score = 37.4 bits (85), Expect = 0.83, Method: Composition-based stats. Identities = 15/154 (9%), Positives = 47/154 (30%), Gaps = 2/154 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++K++ + ++ + I + ++ V + + R E V Sbjct: 137 MLKEKREQIEEELYRFVSTITQELKNSRDVLSMLEHYKENAGAAFRKELDIVCADMRS-S 195 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S +++R + ++S + + L+ + + + K +A Sbjct: 196 SYEAALTRFEARLNSPQLSDVVRGLIGVLRGDDGAV-YFQMLTHDFKQTEFQRLKAKAAK 254 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + K + L ++T + + Sbjct: 255 IPPKIRVYSFAMLMCFLATYFAIIIYEIIRSMGT 288 >gi|41615076|ref|NP_963574.1| hypothetical protein NEQ285 [Nanoarchaeum equitans Kin4-M] gi|40068800|gb|AAR39135.1| NEQ285 [Nanoarchaeum equitans Kin4-M] Length = 606 Score = 37.4 bits (85), Expect = 0.83, Method: Composition-based stats. Identities = 20/147 (13%), Positives = 48/147 (32%), Gaps = 2/147 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLS 66 + K ++ L+ + V G + A+++ + + + + L Sbjct: 346 KIKKMVNQLIIFLETLKSYVSLGYSLERALSLTSKKLQGLEIAELLYNIENKINENKPLD 405 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ ++ + +I G +LSE L +L LR + + L E Sbjct: 406 IAVKEALKKYNNPIIETIFDIIIANYNKGLTSLSELLDSLLDYLRKVNAALERTKDLLSE 465 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYM 152 A + + + V + +M Sbjct: 466 AISEMKMQIIMLIPVMLGIIVGIGNFM 492 >gi|15669091|ref|NP_247896.1| flagellar assembly protein J [Methanocaldococcus jannaschii DSM 2661] gi|3024920|sp|Q58311|FLAJ_METJA RecName: Full=Flagella accessory protein J gi|1591576|gb|AAB98904.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM 2661] Length = 562 Score = 37.4 bits (85), Expect = 0.83, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 52/145 (35%), Gaps = 2/145 (1%) Query: 16 FPNALDIIVRSVRA-GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 FP+ L + SV A G + ++ + P+ + +R+ + LG+ ++S Sbjct: 335 FPDFLRSLGDSVSAKGGGMVSSLEYLSNHDFGPLTHDIKRLYKRLALGIDSNKSWRLFGF 394 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + FS + S GG+ A +S+ R ++ K + +++ Sbjct: 395 DSCSYLIQLFSDIFSRCIYFGGDPKTAAEIISKNFRKIVQLR-KSKYQNIQQFVGVVYGL 453 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDP 159 ++ +N L + Sbjct: 454 GGGLALALFASLGVAKMINDLYSSL 478 >gi|289549030|ref|YP_003474018.1| type II secretion system F domain protein [Thermocrinis albus DSM 14484] gi|289182647|gb|ADC89891.1| Type II secretion system F domain protein [Thermocrinis albus DSM 14484] Length = 384 Score = 37.4 bits (85), Expect = 0.85, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 56/154 (36%), Gaps = 8/154 (5%) Query: 26 SVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 +R+G+P++ AV + Q D + ++ E+ G ++ E+ + F Sbjct: 65 MLRSGMPLAQAVESLALQ-EDKLSGPLLQIKESLEKGNAIPEAFASAG------VFPSFL 117 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 + ++ G NL + L + L+ +KAK + S +V Sbjct: 118 IEMLRAAERGENLEKILETAGQFLQRMGQIKAKAIGSLAYPLFVLALSFLSLVVSSQMVV 177 Query: 146 FTSPGYMNVLIND-PRGHMLLGVAAAFMLIGIMV 178 + + D P ++ + + G++V Sbjct: 178 PKIASVLKDMGKDLPLITKMVLLTSTVAFYGLLV 211 >gi|260775491|ref|ZP_05884388.1| type 4 fimbrial assembly protein PilC [Vibrio coralliilyticus ATCC BAA-450] gi|260608672|gb|EEX34837.1| type 4 fimbrial assembly protein PilC [Vibrio coralliilyticus ATCC BAA-450] Length = 378 Score = 37.4 bits (85), Expect = 0.86, Method: Composition-based stats. Identities = 15/133 (11%), Positives = 45/133 (33%), Gaps = 5/133 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + S+ +GLP+ ++ + + + ++R+IE +S +++ +R Sbjct: 244 LARFSHTLAISLNSGLPIISSLNIAARTTDN---RHYQRIIEQVTQQVSTGVALNAAMRR 300 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + + G L + L ++ + ++E + G Sbjct: 301 SGN--IPELLLQMIMIGEESGQLDKMLNQIANQYEAEVESVIENLGKAIEPMLILLLGGL 358 Query: 136 LPFCVSTLVYFTS 148 + V + Sbjct: 359 VGSLVIAMYLPIF 371 >gi|331086801|ref|ZP_08335878.1| hypothetical protein HMPREF0987_02181 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409967|gb|EGG89402.1| hypothetical protein HMPREF0987_02181 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 431 Score = 37.4 bits (85), Expect = 0.88, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 36/130 (27%), Gaps = 9/130 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--------PVRSEFRRVIETQHLGLSLS 66 D+P L+ V + AG+ V A I E + G S Sbjct: 284 DYPEILNKFVLFLGAGMTVKAAWQKISSDYEKGKIMGKERFAYEEMAYTLREMQAGGSEK 343 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANL-SRILRDRKNMKAKVQALSME 125 E + F ++S + G L L + + + AK + Sbjct: 344 ECYEHFGKRCEAVCYMRFGALLSQNLKRGSKGLADLLRLEAVNAFEERKRAAKKAGEEVG 403 Query: 126 AKASAWIIGS 135 K A + Sbjct: 404 TKLLAPMFFM 413 >gi|325911824|ref|ZP_08174228.1| type II secretion system protein F domain protein [Lactobacillus iners UPII 143-D] gi|325476330|gb|EGC79492.1| type II secretion system protein F domain protein [Lactobacillus iners UPII 143-D] Length = 331 Score = 37.4 bits (85), Expect = 0.88, Method: Composition-based stats. Identities = 21/161 (13%), Positives = 59/161 (36%), Gaps = 16/161 (9%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 LD + +S+ G + ++ ++ V +E +I+ ++ + + + Sbjct: 19 FLDYLQQSLNNGFSFNQSLKIL-----PHVWNEKVNIIKKLSSNIAQGN---DIGQSLVA 70 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 S + GNL E+L+ L++I+R + K+++ + ++ Sbjct: 71 IGFSRMIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIKSEMVYP--------AVLI 122 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + +++ ++ A L+GI + Sbjct: 123 VMMVSLLIAMQTFLHSELSSDSSSSDFIFAIIVSLLGIFFI 163 >gi|164661407|ref|XP_001731826.1| hypothetical protein MGL_1094 [Malassezia globosa CBS 7966] gi|159105727|gb|EDP44612.1| hypothetical protein MGL_1094 [Malassezia globosa CBS 7966] Length = 465 Score = 37.4 bits (85), Expect = 0.88, Method: Composition-based stats. Identities = 12/99 (12%), Positives = 26/99 (26%), Gaps = 3/99 (3%) Query: 8 RTAKFLDDFPN---ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 R + FP A+ +V ++ G V DA+ + + Sbjct: 257 REKQQEAAFPTMEHAMKELVECMKPGESVLDALQRLGKATKSAKEQASSDQQSRAQFERL 316 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALA 103 + M +Y + + + + E Sbjct: 317 THIAGVLMSQYGHMNVYDDVYEGLVRMVRRARLVPEDWD 355 >gi|331694287|ref|YP_004330526.1| Type II secretion system F domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326948976|gb|AEA22673.1| Type II secretion system F domain protein [Pseudonocardia dioxanivorans CB1190] Length = 243 Score = 37.4 bits (85), Expect = 0.89, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 51/157 (32%), Gaps = 20/157 (12%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 +++ + AG+PVS AV Q P RRV LG +E+ + L Sbjct: 107 ELLAVCLEAGMPVSTAVEAGAAQLDGPSGRALRRVAGLLELGADPAEAWQAVDGRPALVA 166 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + + +++ + + ++A+ + A + + P + Sbjct: 167 FARAARRSAATGAGIAHVART---------EAQRLRAETVDSARARAQRAAVTITGPLGL 217 Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 L P ++ G + V A + Sbjct: 218 CFL-----PAFL------VLGIAPVVVGLAGDALARW 243 >gi|52141255|ref|YP_085574.1| comG operon protein 2 [Bacillus cereus E33L] gi|51974724|gb|AAU16274.1| comG operon protein 2 [Bacillus cereus E33L] Length = 343 Score = 37.4 bits (85), Expect = 0.90, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 7/132 (5%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + GL V +A+ +++ Q + E R+ G L I++ Sbjct: 212 YFATQLSGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIAGEPLQSIIAKSG--- 268 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + I Q GNL+ L + S ++ ++ K K + ++ I G + Sbjct: 269 ---YYEEELSYIITHGQANGNLAIELGDYSDLIMEKMEQKIKRMLVIIQPILFTCIGGIV 325 Query: 137 PFCVSTLVYFTS 148 ++ Sbjct: 326 VLMYLAMIMPMF 337 >gi|15899139|ref|NP_343744.1| hypothetical protein SSO2386 [Sulfolobus solfataricus P2] gi|284173746|ref|ZP_06387715.1| hypothetical protein Ssol98_03698 [Sulfolobus solfataricus 98/2] gi|13815688|gb|AAK42534.1| Conserved hypothetical protein [Sulfolobus solfataricus P2] gi|261600888|gb|ACX90491.1| Type II secretion system F domain protein [Sulfolobus solfataricus 98/2] Length = 616 Score = 37.4 bits (85), Expect = 0.91, Method: Composition-based stats. Identities = 22/183 (12%), Positives = 58/183 (31%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + R + P + +R+GL + ++ S+ + + Sbjct: 117 LSQSTENRRIGLDSEAPAFAAVFNVFLRSGLSARYVFDYLSKSTAMQYASQIASYVNKRV 176 Query: 61 LG--LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 S+ +I + Y P + + F T + G + E + ++ + A Sbjct: 177 KYLGESVESAIVESLNYSPSKIFNEFLTTYVTAVRTGAPVLETMEAKTKDILKNIETLAS 236 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM-LIGIM 177 A ++ A ++I ++ + L ++ A + LI ++ Sbjct: 237 TAAENLSGIAEGFVIWLSSGFITFFLVLLLQAIFPSLFGSVPFPVMAIFAMIMIPLINLL 296 Query: 178 VMR 180 + Sbjct: 297 FIW 299 >gi|170702930|ref|ZP_02893770.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] gi|170132169|gb|EDT00657.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] Length = 149 Score = 37.4 bits (85), Expect = 0.92, Method: Composition-based stats. Identities = 13/130 (10%), Positives = 39/130 (30%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P++DA A + + ++ G L++++ + Sbjct: 19 WCRSLATLLGAGVPLADAFATLERTAGHPVFEQATAQIAARVLRGARLADAMHAAGCFPD 78 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ G L L +++ + + + + E + + Sbjct: 79 DVVQP------IAVAEETGALDTMLTDIAALCERQLDARLDALTALGEPLIVIVLGALVG 132 Query: 138 FCVSTLVYFT 147 V + Sbjct: 133 GLVIAMYLPI 142 >gi|111021318|ref|YP_704290.1| hypothetical protein RHA1_ro04342 [Rhodococcus jostii RHA1] gi|110820848|gb|ABG96132.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length = 196 Score = 37.4 bits (85), Expect = 0.95, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 52/147 (35%), Gaps = 4/147 (2%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D++ +RAGLPV+ A + + P+ RR + LG + + Sbjct: 52 AIAATFDLLAACLRAGLPVATAAQAVSRTAPAPLSESLRRAADLLSLGADAATAWEAAAS 111 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-I 133 + ++ + + G +L+ ++ L+ R + A A S + + Sbjct: 112 DPATESLARMA---RRSAASGSSLAGSMTELAADGRIQVEHLAAAAAERAGVLISGPLGL 168 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR 160 LP + + G + +++ Sbjct: 169 CFLPAFICLGIIPVVVGLASRVLDGGL 195 >gi|52550503|gb|AAU84352.1| conserved hypothetical protein [uncultured archaeon GZfos9D8] Length = 266 Score = 37.4 bits (85), Expect = 0.95, Method: Composition-based stats. Identities = 20/181 (11%), Positives = 59/181 (32%), Gaps = 7/181 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS--EFRRVIETQHLGL-S 64 R K P A+ I G+ + + + + E ++++ L Sbjct: 83 RRRKIDGVLPYAVGYIASMAVIGVIPYEIFKKLSESEEEYKEASIEAKQIVRDVELFGFD 142 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ + Q +S F + GG L N + + + + Sbjct: 143 FVVALRNLASTTASQNLSAFLQGAVTTTLSGGELRMYFINKEKEYMAESRKEQEDFIALL 202 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + +++G + + +V +T +++ +L+ + + +G + ++ + Sbjct: 203 GMISEMYVVGLVATPLFVIVMYT----TMLMLEGASPVILVAIIYGMIPLGSIAFIMLTD 258 Query: 185 F 185 Sbjct: 259 V 259 >gi|196034944|ref|ZP_03102351.1| comG operon protein 2 [Bacillus cereus W] gi|195992483|gb|EDX56444.1| comG operon protein 2 [Bacillus cereus W] Length = 343 Score = 37.4 bits (85), Expect = 0.96, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 7/132 (5%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + GL V +A+ +++ Q + E R+ G L I++ Sbjct: 212 YFATQLSGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIAGEPLQSIIAKSG--- 268 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + I Q GNL+ L + S ++ ++ K K + ++ I G + Sbjct: 269 ---YYEEELSYIITHGQANGNLAIELGDYSDLIMEKMEQKIKRMLVIIQPILFTCIGGIV 325 Query: 137 PFCVSTLVYFTS 148 ++ Sbjct: 326 VLMYLAMIMPMF 337 >gi|326772540|ref|ZP_08231824.1| bacterial type II secretion system protein F domain-containing protein [Actinomyces viscosus C505] gi|326637172|gb|EGE38074.1| bacterial type II secretion system protein F domain-containing protein [Actinomyces viscosus C505] Length = 203 Score = 37.4 bits (85), Expect = 0.97, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 21/52 (40%) Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + LP L ++L++ G + + M++G +V R +I Sbjct: 1 MACLPVVGLGLGMLVGADPASLLLDGGLGSAVGALGVGLMVVGHLVTRRLIR 52 >gi|291616286|ref|YP_003519028.1| HofC [Pantoea ananatis LMG 20103] gi|291151316|gb|ADD75900.1| HofC [Pantoea ananatis LMG 20103] Length = 404 Score = 37.4 bits (85), Expect = 1.00, Method: Composition-based stats. Identities = 19/178 (10%), Positives = 50/178 (28%), Gaps = 11/178 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 M+ K K + + + ++AGLP+S +++++ S ++ Sbjct: 56 MRRRDWKWQHKI-----DLIRQLATLLKAGLPLSQSLSLLAEGHSQTPWRALMLALQ--- 107 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L+ Q + +L G L L++ ++++++KV Sbjct: 108 -HQILAGEPFSSALRQWPQIFPPLYPALMEVGELTGQLDVCCEQLAQQQTRQQHLRSKVI 166 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA--FMLIGI 176 + ++ + V + + G Sbjct: 167 KALRYPLFILAVALTVTCGMLLFVLPEFVSVYASFNAPLPAFTAAVIGLSERLQAWGF 224 Score = 34.3 bits (77), Expect = 7.7, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 50/156 (32%), Gaps = 19/156 (12%) Query: 6 KKRTAKFLDDFPNA--------LDIIVRSVR----AGLPVSDAVAVIVGQSSDPVRSEFR 53 ++R + L P L I ++ AGL + + S + + Sbjct: 248 QRREQRVLMHIPIVGGLWQGNQLTQIYSVLQLTQQAGLTLLQGLEAAKVTLSSRLWQDAI 307 Query: 54 RVIETQHLGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112 R+++ L ++S + P + + + G L LA L+ + Sbjct: 308 RLLQNHIAQGNPLYLALSNHPLFSP------LCSQLIQVGEEAGALDVMLARLAEWHEGQ 361 Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 M+A A S+E I G + V + Sbjct: 362 TLMRADNLAASLEPVMMVVIGGIVGTLVIAMYLPVF 397 >gi|317027811|ref|XP_001400044.2| AT DNA binding protein [Aspergillus niger CBS 513.88] Length = 1192 Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 13/119 (10%), Positives = 35/119 (29%), Gaps = 13/119 (10%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSD--AVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + F + + + ++AGL + A + + ++E V + Sbjct: 563 RKRLEHVFGDLTPQVQQELQAGLALGQELAKRRLEREMEQRRQTELEEVTAENTARETRE 622 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S S + + G + + R+R+ + ++Q + Sbjct: 623 WSGSSSPHQ-----------TLPETTDYGTPGTFMKRRMEEWQREREAISREIQMANSS 670 >gi|134056972|emb|CAK44319.1| unnamed protein product [Aspergillus niger] Length = 1271 Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 13/119 (10%), Positives = 35/119 (29%), Gaps = 13/119 (10%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSD--AVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + F + + + ++AGL + A + + ++E V + Sbjct: 642 RKRLEHVFGDLTPQVQQELQAGLALGQELAKRRLEREMEQRRQTELEEVTAENTARETRE 701 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S S + + G + + R+R+ + ++Q + Sbjct: 702 WSGSSSPHQ-----------TLPETTDYGTPGTFMKRRMEEWQREREAISREIQMANSS 749 >gi|225866225|ref|YP_002751603.1| comG operon protein 2 [Bacillus cereus 03BB102] gi|225787671|gb|ACO27888.1| comG operon protein 2 [Bacillus cereus 03BB102] Length = 343 Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 7/132 (5%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + GL V +A+ +++ Q + E R+ G L I++ Sbjct: 212 YFATQLSGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIAGEPLQSIIAKSG--- 268 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + I Q GNL+ L + S ++ ++ K K + ++ I G + Sbjct: 269 ---YYEEELSYIITHGQANGNLAIELGDYSDLIMEKMEQKIKRMLVIIQPILFTCIGGIV 325 Query: 137 PFCVSTLVYFTS 148 ++ Sbjct: 326 VLMYLAMIMPMF 337 >gi|196046275|ref|ZP_03113501.1| comG operon protein 2 [Bacillus cereus 03BB108] gi|196022745|gb|EDX61426.1| comG operon protein 2 [Bacillus cereus 03BB108] Length = 343 Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 7/132 (5%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + GL V +A+ +++ Q + E R+ G L I++ Sbjct: 212 YFATQLSGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIAGEPLQSIIAKSG--- 268 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + I Q GNL+ L + S ++ ++ K K + ++ I G + Sbjct: 269 ---YYEEELSYIITHGQANGNLAIELGDYSDLIMEKMEQKIKRMLVIIQPILFTCIGGIV 325 Query: 137 PFCVSTLVYFTS 148 ++ Sbjct: 326 VLMYLAMIMPMF 337 >gi|209527066|ref|ZP_03275581.1| type II secretion system protein [Arthrospira maxima CS-328] gi|209492494|gb|EDZ92834.1| type II secretion system protein [Arthrospira maxima CS-328] Length = 314 Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 59/164 (35%), Gaps = 17/164 (10%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + + +GL V ++ VI +S+ + +VI++ G LS + R R Sbjct: 29 LAVLLESGLTVYQSLIVIAKKSNPRLGRYLGKVIKSLGRGEDLSVAFRRAPRIFDW---- 84 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 ++ + + G L E L L+ + ++ + A A+ L Sbjct: 85 -WTASLLDIAATSGALPEMLLQLA-EIEKQQTHRQNFYRSVTIAAATTAFSLLLLLATIL 142 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM----VMRLM 182 + + +ND M + FM+ ++ ++R + Sbjct: 143 YTHEAN-------LNDWLLWMFIAGVVGFMVYKLIPRLPLIRRI 179 >gi|328954942|ref|YP_004372275.1| Type II secretion system F domain protein [Coriobacterium glomerans PW2] gi|328455266|gb|AEB06460.1| Type II secretion system F domain protein [Coriobacterium glomerans PW2] Length = 221 Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 45/126 (35%), Gaps = 1/126 (0%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAV-IVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + +DI+ + AGL A+ + +++ R + + + + +++ Sbjct: 80 EVSEMIDIVRLGLSAGLSFDAALELFCANRATSLARRMAQASLAWRIGSATRETALAGAA 139 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + F+ +S LG L+E LA SR +R + + K Sbjct: 140 TDLGARSLESFAVAVSQALALGAPLTETLAGQSREIRAAHRAEVERDIERAPIKLLIPTS 199 Query: 134 GSLPFC 139 + Sbjct: 200 ALILPA 205 >gi|217961733|ref|YP_002340303.1| comG operon protein 2 [Bacillus cereus AH187] gi|222097686|ref|YP_002531743.1| comg operon protein 2 [Bacillus cereus Q1] gi|217066668|gb|ACJ80918.1| comG operon protein 2 [Bacillus cereus AH187] gi|221241744|gb|ACM14454.1| comG operon protein 2 [Bacillus cereus Q1] Length = 343 Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 7/132 (5%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + GL V +A+ +++ Q + E RV G L I++ Sbjct: 212 YFATQLSSLLHGGLSVLEALTIMMEQKYQPFFQYEAGRVKHQLIAGEPLQSIIAKSG--- 268 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + I Q GNL+ L + S ++ ++ K K + ++ I + Sbjct: 269 ---YYEEELSYIITHGQANGNLAIELGDYSDLIMEKMEQKIKRMLVIIQPILFTCIGAIV 325 Query: 137 PFCVSTLVYFTS 148 ++ Sbjct: 326 VLMYLAMIMPMF 337 >gi|55378674|ref|YP_136524.1| hypothetical protein rrnAC1950 [Haloarcula marismortui ATCC 43049] gi|55231399|gb|AAV46818.1| unknown [Haloarcula marismortui ATCC 43049] Length = 559 Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 61/190 (32%), Gaps = 14/190 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQ 59 + + R A P A+ + + + + Q + FRR + Sbjct: 59 LSWVASARRADIAATLPGAVRYLRVLASGTHDRREMLRAVAEQDAYGETAVAFRRALNQG 118 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTV-ISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L SL I R+ P +++ + + E + L + + Sbjct: 119 ILTGSLDTGIERVASETPSRDLLAPFLLKFREHANQSAEALEGYLEMEGRLLSHEQSRQH 178 Query: 119 VQ-----ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG------HMLLGV 167 + L E ++ +L + T++ +PG + + P G ++ G Sbjct: 179 ERATGYLELLAELFVVLLVLPALVVLIVTVMGILAPGLSDPV-ATPLGETTVRAIVVYGS 237 Query: 168 AAAFMLIGIM 177 AA M G++ Sbjct: 238 AAFVMAAGLL 247 >gi|291565892|dbj|BAI88164.1| type II secretion system protein F domain protein [Arthrospira platensis NIES-39] Length = 298 Score = 37.0 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 17/164 (10%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + + +GL V ++ VI +S+ + +VI++ G LS + R R Sbjct: 13 LAVLLESGLTVYQSLIVIAKKSNPRLGRYLGKVIKSLGRGEDLSVAFRRAPRIFDW---- 68 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 ++ + + G L E L L+ + ++ + A A+ L Sbjct: 69 -WTASLLDIAATSGALPEMLLQLA-EIEKQQTHRQNFYRSVTIAAATTAFSLLLLLATIL 126 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM----VMRLM 182 + + +ND M L FM+ ++ ++R + Sbjct: 127 YTHEAN-------LNDWLLWMFLAGVVGFMVYKLIPRLPLIRRI 163 >gi|325284396|ref|YP_004256936.1| Type II secretion system F domain-containing protein [Deinococcus proteolyticus MRP] gi|324316460|gb|ADY27573.1| Type II secretion system F domain protein [Deinococcus proteolyticus MRP] Length = 412 Score = 37.0 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 13/139 (9%), Positives = 39/139 (28%), Gaps = 6/139 (4%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESIS 70 L + + G+ + A+ + + + + G L E + Sbjct: 272 LLSALSRISRTLATMLENGMSNTQAIELSARAAGNAVLADIMLEGKRHIEHGGKLFEVLE 331 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 R E T + + L+ + ++ + +A+ A + + Sbjct: 332 RYP-----SEFPATITGMVETGEESAQLAPMIDRIADFYESQVESEARNLAQRINPILTV 386 Query: 131 WIIGSLPFCVSTLVYFTSP 149 + + + ++ S Sbjct: 387 GLALVVGVIMMAVMAPMSA 405 >gi|228929286|ref|ZP_04092313.1| ComG operon protein 2 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228947957|ref|ZP_04110244.1| ComG operon protein 2 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123760|ref|ZP_04252955.1| ComG operon protein 2 [Bacillus cereus 95/8201] gi|228659895|gb|EEL15540.1| ComG operon protein 2 [Bacillus cereus 95/8201] gi|228811944|gb|EEM58278.1| ComG operon protein 2 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228830576|gb|EEM76186.1| ComG operon protein 2 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 315 Score = 37.0 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 7/132 (5%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + GL V +A+ +++ Q + E R+ G L I++ Sbjct: 184 YFATQLSGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIAGEPLQSIIAKSG--- 240 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + I Q GNL+ L + S ++ ++ K K + ++ I G + Sbjct: 241 ---YYEEELSYIITHGQANGNLAIELGDYSDLIMEKMEQKIKRMLVIIQPILFTCIGGIV 297 Query: 137 PFCVSTLVYFTS 148 ++ Sbjct: 298 VLMYLAMIMPMF 309 >gi|227541577|ref|ZP_03971626.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227182545|gb|EEI63517.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 213 Score = 37.0 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 15/113 (13%), Positives = 37/113 (32%) Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + + + SV G L+ L ++ + + + A +A Sbjct: 96 ALYQPEKAPDSPQVRALGSVAETYGVPLAGLLESVQATMDRQLQHDKQTVAQLQGPITTA 155 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 I+ +LP + + L+ G ++L + G++ +I Sbjct: 156 GILTALPVIGIIMGAAIGADSVTYLLGGGTGGIVLVAGTGCIAAGVLWSARII 208 >gi|217969314|ref|YP_002354548.1| type II secretion system protein [Thauera sp. MZ1T] gi|217506641|gb|ACK53652.1| type II secretion system protein [Thauera sp. MZ1T] Length = 400 Score = 37.0 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 21/179 (11%), Positives = 59/179 (32%), Gaps = 6/179 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLS 66 R + + + + AG+P +++A++ + ++ +I GL LS Sbjct: 53 RRRIARRELIPFCYHLEQLLAAGVPPFESLALLRDAGAEPRLQQVIGALIADVERGLPLS 112 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + +R S + + + G L EA+ ++ L + + + + +++ Sbjct: 113 GAAARQPEA-----FSAVAVSLLRAGEQAGRLPEAIRDIGAALAQEEELASHARRIAIYP 167 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A ++ + V + + V + + L++ Sbjct: 168 AIVATVLLAAVVVALIHVVPELERLLRGTGQRLPLQTRILVGLSAAVRDWGWAMLLVTL 226 >gi|168186176|ref|ZP_02620811.1| bacterial type II secretion system protein F domain [Clostridium botulinum C str. Eklund] gi|169295777|gb|EDS77910.1| bacterial type II secretion system protein F domain [Clostridium botulinum C str. Eklund] Length = 396 Score = 37.0 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 16/128 (12%), Positives = 44/128 (34%), Gaps = 5/128 (3%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + + +G+ + A+ +I+ + + + V ++ +S + S M Sbjct: 266 IQSLSILLSSGISLVSALDIILNSVDNKIVK-NKIVNVISNIKEGMSFADSLKREKM--- 321 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + F + + GN+ E + N I + S+E + + F Sbjct: 322 -FNEFFICMISVGEKIGNIEELIDNAVTIKEEDIESLTNKLIKSIEPVTILMLGLIVTFI 380 Query: 140 VSTLVYFT 147 + ++ Sbjct: 381 MMNILLPM 388 >gi|170016619|ref|YP_001727538.1| Type II secretory pathway, component PulF [Leuconostoc citreum KM20] gi|169803476|gb|ACA82094.1| Type II secretory pathway, component PulF [Leuconostoc citreum KM20] Length = 338 Score = 37.0 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 58/169 (34%), Gaps = 22/169 (13%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + +++G ++ ++ + + LS+ + Sbjct: 15 FFQSLGALLQSGYDMAQSLDTL--------------FLAHHSWRSWLSDIQKDLAAGQSF 60 Query: 79 QEVSFFSTVI-----SVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + GNLSE+L + + LR + K K++ + I+ Sbjct: 61 SDSLRPYVSLDILLQLRLADQHGNLSESLILIGKNLRQIQRQKNKIKQVMRYPMILLIIL 120 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LGVAAAFMLIGIMVM 179 G+L + + + NV +++ + + V +++ +MVM Sbjct: 121 GALLVGIKYFISPILNQWQNVDMSENKSLFVSMPFVVTTILLIVSVMVM 169 >gi|251788265|ref|YP_003002986.1| type IV pilin biogenesis protein [Dickeya zeae Ech1591] gi|247536886|gb|ACT05507.1| type II secretion system protein [Dickeya zeae Ech1591] Length = 401 Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 52/167 (31%), Gaps = 6/167 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + + ++AGLP+ DA+ ++ Q +++ L +S ++S + Sbjct: 60 QLAIIIRQLATLLQAGLPLLDALDLLGRQHEKAGWRC---LLQEIRLQVSQGRALSEV-L 115 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + +L G L E A L+ ++ + V + Sbjct: 116 SDYPAAFPVMCSSLISVGELTGKLDECCARLANYQDMQRQLTGAVIKALRYPAFVIAVGM 175 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVM 179 + + LV LL ++ G++ + Sbjct: 176 MVTLLMLMLVLPEFAELYASFDAPLPWLTRTLLALSDVLGRYGVLFI 222 >gi|110667162|ref|YP_656973.1| hypothetical protein HQ1189A [Haloquadratum walsbyi DSM 16790] gi|109624909|emb|CAJ51319.1| conserved hypothetical protein [Haloquadratum walsbyi DSM 16790] Length = 611 Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 51/154 (33%), Gaps = 4/154 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLG 62 ++K+ A +A +I R V AG V ++ + + F+ L Sbjct: 360 AVRKQVADIESGLADATAVIGRRVGAGEAVETSLTAAADATIGETSTVFKTAAGVQHRLR 419 Query: 63 LSLSESI---SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + + ++ + +P + +I V ++ G E L L+ LR + ++ Sbjct: 420 VDIQQAFLGPYGALSDVPSDRARATAVLIGVAAREGRPAGETLQTLADHLRTVQQTESAA 479 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153 + + +L + + M Sbjct: 480 RRELASITGTLSHTAALFGPLVGGATVSMATKMA 513 >gi|225157634|ref|ZP_03725024.1| Type II secretory pathway component PulF-like protein [Opitutaceae bacterium TAV2] gi|224802701|gb|EEG20954.1| Type II secretory pathway component PulF-like protein [Opitutaceae bacterium TAV2] Length = 321 Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 34/118 (28%), Gaps = 5/118 (4%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + + + AG P+ DA S P R I G L Sbjct: 179 RRYRREQALADFCFALGNLLDAGAPIGDAWIAAGRSSRSPALIAAARSIRDTVQGGGLPG 238 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + P + + G L + L+ + +D + K+ +L Sbjct: 239 TRLEEFSCFPDD-----FVTMYRTGETAGQLDSNMIRLAGLHQDYAGARLKMASLFYP 291 >gi|329943284|ref|ZP_08292058.1| bacterial type II secretion system F domain protein [Chlamydophila psittaci Cal10] gi|332287862|ref|YP_004422763.1| putative general secretion pathway protein F [Chlamydophila psittaci 6BC] gi|313848434|emb|CBY17438.1| general secretion pathway protein F [Chlamydophila psittaci RD1] gi|325507373|gb|ADZ19011.1| putative general secretion pathway protein F [Chlamydophila psittaci 6BC] gi|328814831|gb|EGF84821.1| bacterial type II secretion system F domain protein [Chlamydophila psittaci Cal10] gi|328915124|gb|AEB55957.1| general secretion pathway protein F, putative [Chlamydophila psittaci 6BC] Length = 391 Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 50/162 (30%), Gaps = 4/162 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + ++ +R+GLP+ + ++ + Q S V G Sbjct: 48 RRVRLKNSELIIFSRQMLLLLRSGLPLYETLSSLRDQYQGQALSGLLTVFMENLRGGG-- 105 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 M F + + GNL L N+ +L +R+ M K+ A Sbjct: 106 --SLSQAMAMYPGIFDNFYRSAVLAGESVGNLEGCLQNIIIVLEEREQMTKKLTAALSYP 163 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168 + T V + + + ++ G++ Sbjct: 164 IVLLVFSLVVILFFLTGVIPSLKETFENMEPNTLTSIVFGLS 205 >gi|227487256|ref|ZP_03917572.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227092914|gb|EEI28226.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51867] Length = 213 Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 15/113 (13%), Positives = 37/113 (32%) Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + + + SV G L+ L ++ + + + A +A Sbjct: 96 ALYQPEKAPDSPQVRALGSVAETYGIPLAGLLESVQATMDRQLQHDKQTVAQLQGPITTA 155 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 I+ +LP + + L+ G ++L + G++ +I Sbjct: 156 GILTALPVIGIIMGAAIGADSVTYLLGGGTGGIVLVAGTGCIAAGVLWSARII 208 >gi|107099846|ref|ZP_01363764.1| hypothetical protein PaerPA_01000866 [Pseudomonas aeruginosa PACS2] gi|116052610|ref|YP_792925.1| type IV B pilus protein [Pseudomonas aeruginosa UCBPP-PA14] gi|32481692|gb|AAP84206.1| PilR2 [Pseudomonas aeruginosa PA14] gi|37955693|gb|AAP22532.1| PilR [Pseudomonas aeruginosa] gi|115587831|gb|ABJ13846.1| type IV B pilus Protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 359 Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 22/174 (12%), Positives = 57/174 (32%), Gaps = 10/174 (5%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHLGLSL 65 R + + + + G+P+ DAVA + + + L Sbjct: 19 RKERLQ-----FYESMSTLLENGVPLKDAVAEVHKIFAHEGQHPFHPVAIASREALMGLS 73 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + + L + ++ GNL +A+ + ++ + ++A + + Sbjct: 74 NGKRLATAMALYLPAQER---ALIEAGEMSGNLVQAMGDAVSLVEAQARIRATIWQALLY 130 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A + ++ L V+ + + + + L +A+ GI V+ Sbjct: 131 PSALSAMMVFLLCIVAYRMVPSLARLSDPVTWTGPLATLNAIASFVTGPGIYVL 184 >gi|323527413|ref|YP_004229566.1| Type II secretion system F domain-containing protein [Burkholderia sp. CCGE1001] gi|323384415|gb|ADX56506.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1001] Length = 409 Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 51/156 (32%), Gaps = 2/156 (1%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + +RAGLP++ A ++ Q+ R R++ T ++ + Sbjct: 73 FTRQLASLLRAGLPLAPA-LDLLAQAPGSRRMGMPRIVGTLARDIT-AGLRFSAALQRHP 130 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + + G L+ LA ++ ++KV+A A + ++ Sbjct: 131 AQFNALYCQLVEVGEAAGALAGVLARIADDRERAAAQRSKVRAALTYPLAILLLALAITA 190 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + V T + +A + + Sbjct: 191 ALLVWVVPTFKQIFDGFGARLPAPTQFVLALSSGVA 226 >gi|228935563|ref|ZP_04098379.1| ComG operon protein 2 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229186483|ref|ZP_04313646.1| ComG operon protein 2 [Bacillus cereus BGSC 6E1] gi|228596997|gb|EEK54654.1| ComG operon protein 2 [Bacillus cereus BGSC 6E1] gi|228824101|gb|EEM69917.1| ComG operon protein 2 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 315 Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 7/132 (5%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + GL V +A+ +++ Q + E R+ G L I++ Sbjct: 184 YFATQLSGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIAGEPLQSIIAKSG--- 240 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + I Q GNL+ L + S ++ ++ K K + ++ I G + Sbjct: 241 ---YYEEELSYIITHGQANGNLAIELGDYSDLIMEKMEQKIKRMLVIIQPILFTCIGGIV 297 Query: 137 PFCVSTLVYFTS 148 ++ Sbjct: 298 VLMYLAMIMPMF 309 >gi|119898387|ref|YP_933600.1| general secretion pathway protein F [Azoarcus sp. BH72] gi|119670800|emb|CAL94713.1| general secretion pathway protein F [Azoarcus sp. BH72] Length = 390 Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 16/134 (11%), Positives = 41/134 (30%), Gaps = 6/134 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + + G+PV A+ ++ G + +R+ I+ G + +++ Sbjct: 256 QLARFYRTLGMLLSGGIPVVPALGMVAGLLTHGLRASLDGAIDRVREGRGFAWTLASAGL 315 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 P + + + GNL E L + + + + +I Sbjct: 316 TTP------VALRMLEVGERAGNLGEMLTRAAEFHEEDTARQVEWLTRLFGPLLMLFIGC 369 Query: 135 SLPFCVSTLVYFTS 148 ++ V + Sbjct: 370 AIGLIVVLMYLPIF 383 >gi|229031891|ref|ZP_04187879.1| ComG operon protein 2 [Bacillus cereus AH1271] gi|228729509|gb|EEL80498.1| ComG operon protein 2 [Bacillus cereus AH1271] Length = 330 Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 7/132 (5%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + GL V +A+ +++ Q + E R+ G L I++ Sbjct: 199 YFATQLSGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIAGEPLQSIIAKSG--- 255 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + I Q GNL+ L + S ++ ++ K K + ++ I G + Sbjct: 256 ---YYEEELSYIITHGQANGNLAIELGDYSDLIMEKMEQKVKRMLVIIQPILFTCIGGMI 312 Query: 137 PFCVSTLVYFTS 148 ++ Sbjct: 313 VLMYLAMIMPMF 324 >gi|284166668|ref|YP_003404947.1| type II secretion system F domain protein [Haloterrigena turkmenica DSM 5511] gi|284016323|gb|ADB62274.1| Type II secretion system F domain protein [Haloterrigena turkmenica DSM 5511] Length = 577 Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 16/166 (9%), Positives = 44/166 (26%), Gaps = 2/166 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR--RVIETQHLGLS 64 ++ + F L I + + + + +E V S Sbjct: 91 RKRKQVRQRFHLFLTHITILSMTNINHVEIFRTLAEEDEYDALAEEMGYLVALVDTWNQS 150 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L ++ + ++ F ++ G +SE L + + + + + + Sbjct: 151 LDDACRLRAKQTTSPLLTDFLERLAYTVGGGQQISEFLMDEQDTIIQQFVTRYESDLAKL 210 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + ++ L + P + G + A Sbjct: 211 DVMKELYMSMMLSVAFILVFAIVLPILIGTSPTLLIGGTIAMFAIV 256 >gi|317498623|ref|ZP_07956916.1| bacterial type II secretion system protein F domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316894110|gb|EFV16299.1| bacterial type II secretion system protein F domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 434 Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 11/104 (10%), Positives = 35/104 (33%), Gaps = 13/104 (12%) Query: 5 IKKRTAKFLD---DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS----------E 51 ++R ++P ++ ++ + G+ V A+ + + R + Sbjct: 273 KEQRIQTLEQSMVEYPQIIEHLILFLGTGMSVVAALEAVATEYEKEQRRGNKKEIFVYEQ 332 Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG 95 ++ G+ +++ M + + L S ++ G Sbjct: 333 IKKTCRQISFGVPQTKAFGEMGKKIGLSSYQKLSVLLVQSITRG 376 >gi|33862291|ref|NP_893851.1| pili biogenesis protein [Prochlorococcus marinus str. MIT 9313] gi|33640404|emb|CAE20193.1| pili biogenesis protein [Prochlorococcus marinus str. MIT 9313] Length = 426 Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 12/135 (8%), Positives = 41/135 (30%), Gaps = 5/135 (3%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 I ++AG+P+ ++ + + + + S+ T L + Sbjct: 293 AQFCRIFSSLIKAGVPILMSLEIASETAGNAIISDAILESRTLVQEGVL-----LSAALI 347 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + + + + + G + + L+ ++ D + K +E + + Sbjct: 348 RQKVLPDMALNMLAIGEETGEMDQMLSKVADFYEDEVSSSVKTLTSMLEPAMIVVVGVIV 407 Query: 137 PFCVSTLVYFTSPGY 151 + + + Sbjct: 408 GSILLAMYLPMFTVF 422 >gi|118479420|ref|YP_896571.1| comG operon protein 2 [Bacillus thuringiensis str. Al Hakam] gi|118418645|gb|ABK87064.1| comG operon protein 2 [Bacillus thuringiensis str. Al Hakam] Length = 345 Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 7/132 (5%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + GL V +A+ +++ Q + E R+ G L I++ Sbjct: 214 YFATQLSGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIAGEPLQSIIAKSG--- 270 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + I Q GNL+ L + S ++ ++ K K + ++ I G + Sbjct: 271 ---YYEEELSYIITHGQANGNLAIELGDYSDLIMEKMEQKIKRMLVIIQPILFTCIGGIV 327 Query: 137 PFCVSTLVYFTS 148 ++ Sbjct: 328 VLMYLAMIMPMF 339 >gi|307595210|ref|YP_003901527.1| type II secretion system F domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307550411|gb|ADN50476.1| Type II secretion system F domain protein [Vulcanisaeta distributa DSM 14429] Length = 302 Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 58/156 (37%), Gaps = 2/156 (1%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSES 68 + L D P + +I + +G P+ ++ + + + ++ E Sbjct: 77 NEILVDMPAVVRVIRDGLGSGQPLVGVAEMLTRVGKGRLGRIIAEAITKESMGITTMKEG 136 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 ++ + R + ++ + ++ + G L E L + L D + + + A Sbjct: 137 LAEVSRELGNNYLAVLAVILDTAIRSGARLQETLDMAYKSLEDMVSYQLEKANQVKPYLA 196 Query: 129 SAWIIGSLPFCVS-TLVYFTSPGYMNVLINDPRGHM 163 +++ ++ ++ ++Y P + I+ G + Sbjct: 197 LIYVVMAIYVVLAGIIIYLMMPSIGKIAISTSAGAI 232 >gi|229140977|ref|ZP_04269521.1| ComG operon protein 2 [Bacillus cereus BDRD-ST26] gi|228642553|gb|EEK98840.1| ComG operon protein 2 [Bacillus cereus BDRD-ST26] Length = 315 Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 7/132 (5%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + GL V +A+ +++ Q + E RV G L I++ Sbjct: 184 YFATQLSSLLHGGLSVLEALTIMMEQKYQPFFQYEAGRVKHQLIAGEPLQSIIAKSG--- 240 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + I Q GNL+ L + S ++ ++ K K + ++ I + Sbjct: 241 ---YYEEELSYIITHGQANGNLAIELGDYSDLIMEKMEQKIKRMLVIIQPILFTCIGAIV 297 Query: 137 PFCVSTLVYFTS 148 ++ Sbjct: 298 VLMYLAMIMPMF 309 >gi|167767551|ref|ZP_02439604.1| hypothetical protein CLOSS21_02070 [Clostridium sp. SS2/1] gi|167710843|gb|EDS21422.1| hypothetical protein CLOSS21_02070 [Clostridium sp. SS2/1] Length = 445 Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 11/104 (10%), Positives = 35/104 (33%), Gaps = 13/104 (12%) Query: 5 IKKRTAKFLD---DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS----------E 51 ++R ++P ++ ++ + G+ V A+ + + R + Sbjct: 284 KEQRIQTLEQSMVEYPQIIEHLILFLGTGMSVVAALEAVATEYEKEQRRGNKKEIFVYEQ 343 Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG 95 ++ G+ +++ M + + L S ++ G Sbjct: 344 IKKTCRQISFGVPQTKAFGEMGKKIGLSSYQKLSVLLVQSITRG 387 >gi|166363152|ref|YP_001655425.1| pilin biogenesis protein [Microcystis aeruginosa NIES-843] gi|166085525|dbj|BAG00233.1| pilin biogenesis protein [Microcystis aeruginosa NIES-843] Length = 404 Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 11/134 (8%), Positives = 39/134 (29%), Gaps = 7/134 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + R+G+P+ ++ ++ + + + G +S ++ + Sbjct: 273 FCRVFGTLTRSGVPILSSLDIVCNTVGNQVIANAIAGAKAEIQQGGMMSLALQKA----- 327 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L + ++ D K +E + G + Sbjct: 328 -NVFPPLAIQMISIGEETGELDAMMMKVADFYEDEVEQAVKALTSIIEPLMMIGVAGMVG 386 Query: 138 FCVSTLVYFTSPGY 151 + ++ + Sbjct: 387 IILLSMYLPMFKIF 400 >gi|107099889|ref|ZP_01363807.1| hypothetical protein PaerPA_01000910 [Pseudomonas aeruginosa PACS2] Length = 128 Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 15/126 (11%), Positives = 40/126 (31%), Gaps = 5/126 (3%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + + AG+P+ DA+ + G + + V + +S + Sbjct: 1 MSTTFAAGVPLVDALDSVSGATGNIVFK-----NAVSKIKQDVSTGMQLNFSMRTTSVFP 55 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + ++ + G+L E L+ ++ + + ME A + + + Sbjct: 56 NMAIQMTAIGEESGSLDEMLSKVASYYEEEVDNAVDNLTTLMEPMIMAVLGVLVGGLIVA 115 Query: 143 LVYFTS 148 + Sbjct: 116 MYLPIF 121 >gi|261402162|ref|YP_003246386.1| Type II secretion system F domain protein [Methanocaldococcus vulcanius M7] gi|261369155|gb|ACX71904.1| Type II secretion system F domain protein [Methanocaldococcus vulcanius M7] Length = 344 Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 47/139 (33%), Gaps = 3/139 (2%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGL-SLS 66 + AL +V +RAG + + + I + V E R +I ++ SL Sbjct: 167 RGEVKLQVLFALLYMVSILRAGASLPEVLESISKSEEYGIVSFEVRSIIRDVNIAGYSLV 226 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ R + + + + GNL L L + + MK ++ Sbjct: 227 EALERAKLRTEIPLLKKLYDQMII-GYNKGNLPMLLEKLYEDIVRQSMMKLDTSKFLIQN 285 Query: 127 KASAWIIGSLPFCVSTLVY 145 + L S ++ Sbjct: 286 LGNLAFGVGLILPFSGMIL 304 >gi|21241468|ref|NP_641050.1| type II secretion system protein F [Xanthomonas axonopodis pv. citri str. 306] gi|21106810|gb|AAM35586.1| type II secretion system protein F [Xanthomonas axonopodis pv. citri str. 306] Length = 402 Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 14/129 (10%), Positives = 36/129 (27%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + V +GLP+ + + + + + T + ++ E S Sbjct: 270 MARTLAIMVNSGLPLMEGLMIAARTVDNRALR-----LATDSMVTAIREGGSLAAAMKRA 324 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 ++ + G L+ L + L +E + G + Sbjct: 325 GVFPPTLLYMASSGENSGRLAPMLERAADYLEREFEAFTTAAMSLLEPAIIVLLGGVVAV 384 Query: 139 CVSTLVYFT 147 V +++ Sbjct: 385 IVLSILLPI 393 >gi|49480953|ref|YP_038303.1| comG operon protein 2 [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49332509|gb|AAT63155.1| comG operon protein 2 [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 343 Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 7/132 (5%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + GL V +A+ +++ Q + E R+ G +L I++ Sbjct: 212 YFATQLSGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIAGEALQSIIAKSG--- 268 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + I Q GNL+ L + S ++ ++ K K + ++ I G + Sbjct: 269 ---YYEEELSYIITHGQANGNLAIELGDYSDLIMEKMEQKMKRMLVIIQPILFTCIGGIV 325 Query: 137 PFCVSTLVYFTS 148 ++ Sbjct: 326 VLMYLAMIMPMF 337 >gi|206977996|ref|ZP_03238882.1| comG operon protein 2 [Bacillus cereus H3081.97] gi|206743796|gb|EDZ55217.1| comG operon protein 2 [Bacillus cereus H3081.97] Length = 343 Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 44/132 (33%), Gaps = 7/132 (5%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + GL V +A+ +++ Q + E RV G L I++ Y Sbjct: 212 YFATQLSSLLHGGLSVLEALTIMMEQKYQPFFQYEAGRVKHQLIAGEPLQSIIAKSGYYE 271 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 I Q GNL+ L + S ++ ++ K K + ++ I + Sbjct: 272 EEPSY------IITHGQANGNLAIELGDYSDLIMEKMEQKIKRMLVIIQPILFTCIGAIV 325 Query: 137 PFCVSTLVYFTS 148 ++ Sbjct: 326 VLMYLAMIMPMF 337 >gi|153876990|ref|ZP_02004027.1| General secretion pathway protein F [Beggiatoa sp. PS] gi|152066546|gb|EDN65973.1| General secretion pathway protein F [Beggiatoa sp. PS] Length = 199 Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 16/131 (12%), Positives = 41/131 (31%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + +G+P+ +A+ + S+ + R + G SL ++ + P Sbjct: 68 FTRTLSILIESGVPMLEALQITAQVLSNRLIRQATVEATQKVREGSSLHNALKHSGLFPP 127 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G+L + L + + V E + G + Sbjct: 128 MTVY------LIASGESSGHLEQMLERAAIMQERELEALIGVLLGLFEPLLILLMGGIVL 181 Query: 138 FCVSTLVYFTS 148 V ++ Sbjct: 182 TIVLAILMPIF 192 >gi|325663219|ref|ZP_08151669.1| hypothetical protein HMPREF0490_02410 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470673|gb|EGC73903.1| hypothetical protein HMPREF0490_02410 [Lachnospiraceae bacterium 4_1_37FAA] Length = 394 Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 35/130 (26%), Gaps = 9/130 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--------PVRSEFRRVIETQHLGLSLS 66 D+P L+ V + AG+ A I E + G S Sbjct: 247 DYPEILNKFVLFLGAGMTAKAAWQKISSDYEKGKIMGKERFAYEEMAYTLREMQAGGSEK 306 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANL-SRILRDRKNMKAKVQALSME 125 E + F ++S + G L L + + + AK + Sbjct: 307 ECYEHFGKRCEAVCYMRFGALLSQNLKRGSKGLADLLRLEAVNAFEERKRAAKKAGEEVG 366 Query: 126 AKASAWIIGS 135 K A + Sbjct: 367 TKLLAPMFFM 376 >gi|325969839|ref|YP_004246031.1| type II secretion system protein [Vulcanisaeta moutnovskia 768-28] gi|323709042|gb|ADY02529.1| type II secretion system protein [Vulcanisaeta moutnovskia 768-28] Length = 620 Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 14/139 (10%), Positives = 49/139 (35%), Gaps = 1/139 (0%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESI 69 + ++ L + ++G + + ++++ G+ + E + Sbjct: 388 EIDREYAEFLRDVTELRKSGFTPEKTFETLRYTRKYGAFDQYLDKMVKQIRYGVPIREVL 447 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 S ++ + F+ +++ LGG + L L+ +++ ++A + Sbjct: 448 SSIMPKLHSYYSKVFTFLLTETIDLGGASPQVLDMLASFASSIVSVQENMRARLRPLRYV 507 Query: 130 AWIIGSLPFCVSTLVYFTS 148 +I + ++ F+ Sbjct: 508 PYIGAIILIVTLVVLIFSV 526 >gi|229494799|ref|ZP_04388555.1| bacterial type II secretion system protein F domain protein [Rhodococcus erythropolis SK121] gi|229318295|gb|EEN84160.1| bacterial type II secretion system protein F domain protein [Rhodococcus erythropolis SK121] Length = 189 Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 LD++ +RAGLPVS A+ + + P+ RRV + LG + S + Sbjct: 50 LDLLGACLRAGLPVSAAITAMASTAPKPMADSLRRVADLLALGADPDAAWSEAALDPDTE 109 Query: 80 EVSFF 84 ++ Sbjct: 110 ALARM 114 >gi|257793110|ref|YP_003186508.1| hypothetical protein Aaci_3123 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479802|gb|ACV60119.1| hypothetical protein Aaci_3123 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 294 Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 50/167 (29%), Gaps = 4/167 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL- 61 I+ R V +R +P+ +A+ I ++ RR + Sbjct: 129 RRIQARRRDAAWQVRQLKRRFVSLLRRRIPLEEALWQIARDAAAQRTDFGRRFVARMQEA 188 Query: 62 -GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L +++ + + E++ F I +L L +RD ++ Sbjct: 189 RVRPLGDALHDLAEEFRVPELTRFVQAIRHAE--ANSLGSLADILETQIRDESAQLDELV 246 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 A + S+ V L + + G +LG+ Sbjct: 247 DAEKNAMQLKLRMMSVVMFVYILGWAGYFAFAVFRHQIQTGQGILGL 293 >gi|138896010|ref|YP_001126463.1| ComG operon protein 2 [Geobacillus thermodenitrificans NG80-2] gi|134267523|gb|ABO67718.1| ComG operon protein 2 [Geobacillus thermodenitrificans NG80-2] Length = 342 Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 52/161 (32%), Gaps = 7/161 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + R + G P+ A+ + Q+ R E R ++ GL L +I + Sbjct: 14 FFARLGRLLERGYPLGQALEFLAIQAPMKRRLELERCLQQLRAGLPLFAAIEELP----- 68 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 V + + ++ G+L +A L + +++ ++ + Sbjct: 69 --VDRLAVSLLFFAERHGDLPRGMAEAGAALAQKARFGEQLRRFGRYPLFLFALLIVMLL 126 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + L + LL A + ++V+ Sbjct: 127 LMERWLLPQFERTAAALSPENEQTSLLIALIAHAPMALVVI 167 >gi|227529719|ref|ZP_03959768.1| competence protein [Lactobacillus vaginalis ATCC 49540] gi|227350385|gb|EEJ40676.1| competence protein [Lactobacillus vaginalis ATCC 49540] Length = 336 Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 21/172 (12%), Positives = 61/172 (35%), Gaps = 17/172 (9%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 L +I +R+G + A+ + S + + + + +L + + + Sbjct: 15 AEWLLLIADLLRSGFSLRHAI-----EFSGAILKRHQILFQEINLAM---QDGKSFAECL 66 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + + ++ G+L E L + +++ ++ + K+ L ++ SL Sbjct: 67 KPHIKPNLYYQL-LFAEQHGSLEECLQEIGKLMLHQEKQRQKLMTLLQYPLILLGLLVSL 125 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLL--------GVAAAFMLIGIMVMR 180 + V+ + + + LL G+ +L+G+ ++ Sbjct: 126 MVTLKIFVFPELSQWGTGNSQNWADYYLLEIIAYLSGGILVTSLLVGLRWLK 177 >gi|42783366|ref|NP_980613.1| comG operon protein 2 [Bacillus cereus ATCC 10987] gi|42739294|gb|AAS43221.1| comG operon protein 2 [Bacillus cereus ATCC 10987] Length = 343 Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 7/132 (5%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + GL V +A+ +++ Q + E RV G L I++ Sbjct: 212 YFATQLSGLLHGGLSVLEALTIMMEQKYQPFFQYEAGRVKHQLIAGEPLQSIIAKSG--- 268 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + I Q GNL+ L + S ++ ++ K K + ++ I + Sbjct: 269 ---YYEEELSYIITHGQANGNLAIELGDYSDLIMEKMEQKIKRMLVIIQPILFTCIGAIV 325 Query: 137 PFCVSTLVYFTS 148 ++ Sbjct: 326 VLMYLAMIMPMF 337 >gi|311065087|ref|YP_003971813.1| hypothetical protein BBPR_1759 [Bifidobacterium bifidum PRL2010] gi|310867407|gb|ADP36776.1| Conserved hypothetical protein, TadC-like protein [Bifidobacterium bifidum PRL2010] Length = 141 Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 16/139 (11%), Positives = 44/139 (31%), Gaps = 1/139 (0%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P + ++ S+R+G+ V+ ++ + + V + H G S ++ + Sbjct: 3 LPLLIGLLSVSLRSGMSVTRSLEGVGEAVGGALGGGLCAVADALHRGSSWKDAWNAADFG 62 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + G + L S + + + + A + Sbjct: 63 DYAETSAILRGALEPSWTRGVSPIGRLTTASEQWMEGERTAIEQESASLSVKLLLPTGLC 122 Query: 135 SLPFCVSTLVYFTSPGYMN 153 LP V + + ++ Sbjct: 123 MLPAFVFLGILPSVMAFVG 141 >gi|240949019|ref|ZP_04753373.1| pili/fimbriae biogenesis protein [Actinobacillus minor NM305] gi|240296606|gb|EER47224.1| pili/fimbriae biogenesis protein [Actinobacillus minor NM305] Length = 398 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 56/162 (34%), Gaps = 6/162 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLSESISR 71 ++ L + V+A +P+ A+ +I+ + + + LG + S ++ R Sbjct: 57 SEEITQVLSQLAMLVKAKIPLKSALTMILENCTQIKIYLWLETLIKWIELGYAFSAALGR 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 Y+P QE + ++ G L L N+++ +++ KV+ + Sbjct: 117 SETYIPQQE-----IQLIKMGEVSGKLETILQNIAKARTEKEKTLKKVKKILFYPIVVLT 171 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 I SL + + + + + L Sbjct: 172 ISFSLSIGLLLFIVPQFAELYGAKDKSLPMITEILFSLSAFL 213 >gi|254442237|ref|ZP_05055713.1| Bacterial type II secretion system protein F domain [Verrucomicrobiae bacterium DG1235] gi|198256545|gb|EDY80853.1| Bacterial type II secretion system protein F domain [Verrucomicrobiae bacterium DG1235] Length = 318 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 56/166 (33%), Gaps = 18/166 (10%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 L+ + + AG+ S+AV+ + + + G S E+ Sbjct: 9 LAEWLEQVSDGLDAGMAASNAVS-LAKTLPSGMSE---GLESGFRAGKSWGEAFEETGLP 64 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + E + +++ G L + ++ R++ +K +V+ Sbjct: 65 LSFAEQ-----SMLKAAEVSGRLPAMMRRIAEGRREQAKVKRRVRLALAYPAFLLHFAA- 118 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLL---GVAAAFMLIGIMV 178 V ++ Y + + ++ G +++ +AA F I + Sbjct: 119 ---FVFSITYLVNGDTWSFFVS--AGMVVVPVWLLAAFFYSITRVW 159 >gi|21232852|ref|NP_638769.1| type II secretion system protein F [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767077|ref|YP_241839.1| type II secretion system protein F [Xanthomonas campestris pv. campestris str. 8004] gi|21114680|gb|AAM42693.1| type II secretion system protein F [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572409|gb|AAY47819.1| type II secretion system protein F [Xanthomonas campestris pv. campestris str. 8004] Length = 398 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 39/130 (30%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMP 77 + V +GLP+ + + + + ++ G SL ++ R + P Sbjct: 266 MARTLAIMVNSGLPLMEGLMIAARTVDNHALRLATDSMVTAIREGGSLGAAMKRAGVFPP 325 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + G L+ L + L +E + G + Sbjct: 326 ------TLLYMASSGENSGRLAPMLERAADYLEREFESFTTAAMSLLEPLIIVLLGGVVA 379 Query: 138 FCVSTLVYFT 147 V +++ Sbjct: 380 VIVLSILLPI 389 >gi|163785888|ref|ZP_02180344.1| bacterial type II secretion system protein F [Hydrogenivirga sp. 128-5-R1-1] gi|159878844|gb|EDP72892.1| bacterial type II secretion system protein F [Hydrogenivirga sp. 128-5-R1-1] Length = 197 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 13/119 (10%), Positives = 39/119 (32%), Gaps = 7/119 (5%) Query: 31 LPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS 89 + ++ A+ ++ Q E + G S++++ + + F + Sbjct: 82 VHITSALEIVAKQQEGAELKEKLLKTKALIAEGKSIADAFEEV------KIFPKFLIEMI 135 Query: 90 VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 + G LS + S + + + K+++ + + + +V T Sbjct: 136 KAGEASGALSSIFLSASNFIEKQNSFKSQIINALIYPSIVIGVGFLALIIIMNVVVPTV 194 >gi|188990169|ref|YP_001902179.1| type II protein secretion system protein F [Xanthomonas campestris pv. campestris str. B100] gi|167731929|emb|CAP50115.1| type II protein secretion system protein F [Xanthomonas campestris pv. campestris] Length = 398 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 39/130 (30%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMP 77 + V +GLP+ + + + + ++ G SL ++ R + P Sbjct: 266 MARTLAIMVNSGLPLMEGLMIAARTVDNHALRLATDSMVTAIREGGSLGAAMKRAGVFPP 325 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + G L+ L + L +E + G + Sbjct: 326 ------TLLYMASSGENSGRLAPMLERAADYLEREFESFTTAAMSLLEPLIIVLLGGVVA 379 Query: 138 FCVSTLVYFT 147 V +++ Sbjct: 380 VIVLSILLPI 389 >gi|139438670|ref|ZP_01772154.1| Hypothetical protein COLAER_01155 [Collinsella aerofaciens ATCC 25986] gi|133775750|gb|EBA39570.1| Hypothetical protein COLAER_01155 [Collinsella aerofaciens ATCC 25986] Length = 213 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 21/142 (14%), Positives = 48/142 (33%), Gaps = 1/142 (0%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAV-IVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + +D++ + AGL A+ + + S R + Q + + + Sbjct: 72 EVSEMIDVVRLGLSAGLSFDAALEIFCANRRSVLALRLERACMAWQVGVGTREDELLAAA 131 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + ++ + F+ + LG L+E LA SR +R + + K Sbjct: 132 RDLDVRALETFAITVGQALALGAPLAETLAAQSREIRAAHRAAVEREIERAPIKLLIPTG 191 Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155 + + + G ++ Sbjct: 192 TLILPALLLSILGPLLGAGGMM 213 >gi|294146460|ref|YP_003559126.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S] gi|292676877|dbj|BAI98394.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S] Length = 287 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 20/153 (13%), Positives = 50/153 (32%), Gaps = 6/153 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSES 68 + +FP LD+++ + +G+ + I + ++ G+ ++ Sbjct: 135 IMAEFPFLLDLMLMMLESGISLDQCFRSIARDEAIAVPHHARLIAMLVADLDRGMRYEQA 194 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + R + + + + G L+ AL R R+ A+ M Sbjct: 195 LDRWAARVAVNGAKELAALFRQALFQGVELAPALREFVREFTQRRVANAREA---MGGIT 251 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 ++ + F + L + + + RG Sbjct: 252 VRMVVLMILFFMPALFVVLGGPPVVAIFDTLRG 284 >gi|196248903|ref|ZP_03147603.1| type II secretion system protein [Geobacillus sp. G11MC16] gi|196211779|gb|EDY06538.1| type II secretion system protein [Geobacillus sp. G11MC16] Length = 342 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 52/161 (32%), Gaps = 7/161 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + R + G P+ A+ + Q+ R E R ++ GL L +I + Sbjct: 14 FFTRLGRLLERGYPLGQALEFLAIQAPMKRRLELERCLQQLRAGLPLFAAIEELP----- 68 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 V + + ++ G+L +A L + +++ ++ + Sbjct: 69 --VDRLAVSLLFFAERHGDLPRGMAEAGAALAQKARFGEQLRRFGRYPLFLFALLIVMLL 126 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + L + LL A + ++V+ Sbjct: 127 LMERWLLPQFERTAAALSPENEQTSLLIALIAHAPMALVVI 167 >gi|150399788|ref|YP_001323555.1| hypothetical protein Mevan_1041 [Methanococcus vannielii SB] gi|150399793|ref|YP_001323560.1| hypothetical protein Mevan_1047 [Methanococcus vannielii SB] gi|150399798|ref|YP_001323565.1| hypothetical protein Mevan_1053 [Methanococcus vannielii SB] gi|150012491|gb|ABR54943.1| conserved hypothetical protein [Methanococcus vannielii SB] gi|150012496|gb|ABR54948.1| conserved hypothetical protein [Methanococcus vannielii SB] gi|150012501|gb|ABR54953.1| conserved hypothetical protein [Methanococcus vannielii SB] Length = 198 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 45/102 (44%), Gaps = 1/102 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV-IETQHLG 62 + + + KF + P AL ++V S+ +G + +A+ ++ V S F ++ + Sbjct: 77 MYESKMEKFDSNLPKALYVMVLSLDSGRSIVEAINEVIRSGIPEVDSVFSKIVLLMTEKK 136 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN 104 LS +S+ + + + S +I + GG L+ L Sbjct: 137 LSFEDSMMLVSNSLDSKLFRQISRLIIENRKYGGELANTLNM 178 >gi|152988769|ref|YP_001349825.1| type IV B pilus protein [Pseudomonas aeruginosa PA7] gi|254244612|ref|ZP_04937934.1| PilR [Pseudomonas aeruginosa 2192] gi|126197990|gb|EAZ62053.1| PilR [Pseudomonas aeruginosa 2192] gi|150963927|gb|ABR85952.1| type IV B pilus Protein [Pseudomonas aeruginosa PA7] Length = 359 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 22/174 (12%), Positives = 57/174 (32%), Gaps = 10/174 (5%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHLGLSL 65 R + + + + G+P+ DAVA + + + L Sbjct: 19 RKERLQ-----FYESMSTLLENGVPLKDAVAEVHKIFAHEGQHPFHPVAIASREALMGLS 73 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + + L + ++ GNL +A+ + ++ + ++A + + Sbjct: 74 NGKRLATAMALYLPAQER---ALIEAGEMSGNLVQAMGDAVSLVEAQARIRATIWQALLY 130 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A + ++ L V+ + + + + L +A+ GI V+ Sbjct: 131 PSALSAMMVFLLCIVAYRMVPSLARLSDPVTWTGPLATLNAIASFVTGPGIYVL 184 >gi|307595208|ref|YP_003901525.1| type II secretion system F domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307550409|gb|ADN50474.1| Type II secretion system F domain protein [Vulcanisaeta distributa DSM 14429] Length = 265 Score = 36.6 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 70/182 (38%), Gaps = 7/182 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLS-- 64 R++ F N L I++ + +G+ + + ++ + + + EFR ++ G Sbjct: 76 RSSHFERYLINTLMIMIPLIASGVTLEELISTLATIERDPYIAREFRLILRDAREGGMDI 135 Query: 65 ---LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 L SISR+ + + + + L L L L R +R +V Sbjct: 136 LTALRASISRVPSRTYGEIFGLIAETYLISANLADVLMLKLEYLVRNKYNRLRSATQVLG 195 Query: 122 LSMEAKASAWIIGSLPFCVSTL-VYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L ME ++ + + + + P Y+ ++ P +++ ++G ++ Sbjct: 196 LFMEIYLVVALLLPILLVLIVITLSPLGPIYLGPIVLSPTLALIITTLIYSPVMGYVMYI 255 Query: 181 LM 182 L+ Sbjct: 256 LI 257 >gi|325288256|ref|YP_004264437.1| hypothetical protein Sgly_0062 [Syntrophobotulus glycolicus DSM 8271] gi|324963657|gb|ADY54436.1| hypothetical protein Sgly_0062 [Syntrophobotulus glycolicus DSM 8271] Length = 290 Score = 36.6 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 17/150 (11%), Positives = 46/150 (30%), Gaps = 2/150 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 + K + P + I + ++A V + + + +E + S Sbjct: 141 KRGKIEQELPRFVATITQELKASRDVLSMLENFKRNAGEDFSAELDILTADMRS-SSYEA 199 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +++R +S + + + L+ ++ + + K QA+ + K Sbjct: 200 ALTRFESRFNSPMLSDITRGLIGVLRGDDG-GMYFQMLAHDMKQLELQRLKAQAMKIPPK 258 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + L + T + + L Sbjct: 259 IRVFSFAMLMCFLMTYMAIIVYEIITSLGG 288 >gi|89892802|ref|YP_516289.1| hypothetical protein DSY0056 [Desulfitobacterium hafniense Y51] gi|89332250|dbj|BAE81845.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 256 Score = 36.6 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 17/150 (11%), Positives = 46/150 (30%), Gaps = 2/150 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 + K + P + I + ++A V + + + +E + S Sbjct: 107 KRGKIEQELPRFVATITQELKASRDVLSMLENFKRNAGEDFAAELDILTADMRS-SSYEA 165 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +++R +S + + + L+ ++ + + K QA+ + K Sbjct: 166 ALTRFEARFNSPMLSDITRGLIGVLRGDDG-GMYFQMLAHDMKQLELQRLKAQAMKIPPK 224 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + L + T + + L Sbjct: 225 IRVFSFAMLMCFLMTYMAIIVYEIVTSLGG 254 >gi|78046314|ref|YP_362489.1| type II secretion system protein F [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034744|emb|CAJ22389.1| type II secretion system protein F [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 400 Score = 36.6 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 40/130 (30%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMP 77 + V +GLP+ + + + + ++ G SL+ ++ R + P Sbjct: 268 MARTLAIMVNSGLPLMEGLMIAARTVDNRALRLATDGMVTAIREGGSLAAAMKRAGVFPP 327 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + G L+ L + L +E + G + Sbjct: 328 ------TLLYMASSGENSGRLAPMLERAADYLEREFETFTAAAMSLLEPAIIVLLGGVVA 381 Query: 138 FCVSTLVYFT 147 V +++ Sbjct: 382 VIVLSILLPI 391 >gi|16081951|ref|NP_394361.1| hypothetical protein Ta0902 [Thermoplasma acidophilum DSM 1728] gi|10640179|emb|CAC12031.1| conserved hypothetical membrane protein [Thermoplasma acidophilum] Length = 284 Score = 36.6 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 64/178 (35%), Gaps = 7/178 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIE-TQHL 61 +K + P+AL + +G+P ++ + G E +RV + Sbjct: 102 RVKSIKSNIEHVMPDALAVAYGLSLSGVPADTMISELAGIKELGEFAKESQRVNSFMYAM 161 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G ++ R + + S F I + L +L+ L + + K+K+ Sbjct: 162 GYDFLSALERSEKVSASPDFSRFVAGIRLSIILNSDLTAFLRDRLDYYVRVQENKSKLSL 221 Query: 122 LSMEAKASAWIIGSLPFCVSTLVY--FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 S+ A +++ ++ F + + S +VL ++ + + ++G Sbjct: 222 DSLGLAAESYVAVAIAFPILLYLTGSIISIKNSSVLFFVLS---MMVLVVSAAVMGYF 276 >gi|30264314|ref|NP_846691.1| comG operon protein 2 [Bacillus anthracis str. Ames] gi|47529759|ref|YP_021108.1| ComG operon protein 2 [Bacillus anthracis str. 'Ames Ancestor'] gi|49187141|ref|YP_030393.1| comG operon protein 2 [Bacillus anthracis str. Sterne] gi|167634651|ref|ZP_02392971.1| comG operon protein 2 [Bacillus anthracis str. A0442] gi|170687358|ref|ZP_02878575.1| comG operon protein 2 [Bacillus anthracis str. A0465] gi|177655900|ref|ZP_02937092.1| comG operon protein 2 [Bacillus anthracis str. A0174] gi|190565781|ref|ZP_03018700.1| comG operon protein 2 [Bacillus anthracis Tsiankovskii-I] gi|196041546|ref|ZP_03108838.1| comG operon protein 2 [Bacillus cereus NVH0597-99] gi|227817017|ref|YP_002817026.1| comG operon protein 2 [Bacillus anthracis str. CDC 684] gi|229600387|ref|YP_002868533.1| comG operon protein 2 [Bacillus anthracis str. A0248] gi|254684002|ref|ZP_05147862.1| comG operon protein 2 [Bacillus anthracis str. CNEVA-9066] gi|254721836|ref|ZP_05183625.1| comG operon protein 2 [Bacillus anthracis str. A1055] gi|254736350|ref|ZP_05194056.1| comG operon protein 2 [Bacillus anthracis str. Western North America USA6153] gi|254741388|ref|ZP_05199075.1| comG operon protein 2 [Bacillus anthracis str. Kruger B] gi|254753977|ref|ZP_05206012.1| comG operon protein 2 [Bacillus anthracis str. Vollum] gi|254757848|ref|ZP_05209875.1| comG operon protein 2 [Bacillus anthracis str. Australia 94] gi|30258959|gb|AAP28177.1| comG operon protein 2 [Bacillus anthracis str. Ames] gi|47504907|gb|AAT33583.1| comG operon protein 2 [Bacillus anthracis str. 'Ames Ancestor'] gi|49181068|gb|AAT56444.1| comG operon protein 2 [Bacillus anthracis str. Sterne] gi|167530103|gb|EDR92838.1| comG operon protein 2 [Bacillus anthracis str. A0442] gi|170668553|gb|EDT19299.1| comG operon protein 2 [Bacillus anthracis str. A0465] gi|172079933|gb|EDT65038.1| comG operon protein 2 [Bacillus anthracis str. A0174] gi|190562700|gb|EDV16666.1| comG operon protein 2 [Bacillus anthracis Tsiankovskii-I] gi|196027534|gb|EDX66149.1| comG operon protein 2 [Bacillus cereus NVH0597-99] gi|227006721|gb|ACP16464.1| comG operon protein 2 [Bacillus anthracis str. CDC 684] gi|229264795|gb|ACQ46432.1| comG operon protein 2 [Bacillus anthracis str. A0248] Length = 343 Score = 36.6 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 7/132 (5%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + GL V +A+ +++ Q + E R+ G L I++ Sbjct: 212 YFATQLSGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIAGEPLQSIIAK----- 266 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + + I Q GNL+ L + S ++ ++ K K + ++ I G + Sbjct: 267 -SEYYEEELSYIITHGQANGNLAIELGDYSDLIMEKMERKIKRMLVIIQPILFTCIGGIV 325 Query: 137 PFCVSTLVYFTS 148 ++ Sbjct: 326 VLMYLAMIMPMF 337 >gi|303244213|ref|ZP_07330550.1| Type II secretion system F domain protein [Methanothermococcus okinawensis IH1] gi|302485340|gb|EFL48267.1| Type II secretion system F domain protein [Methanothermococcus okinawensis IH1] Length = 559 Score = 36.6 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 60/176 (34%), Gaps = 6/176 (3%) Query: 5 IKKRTAKF----LDDFPNALDIIVRSVRA-GLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 + KR +FP+ L + SV A G + D++ + P+ + ++ + Sbjct: 317 VAKREESLVIRKEYNFPDFLRSLGDSVSAKGGGMEDSLKYLSSHDFGPLTKDLEQLYKRV 376 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + + +++ + FS + + LGG+ +A + R N++ K Sbjct: 377 SIRIDNNKAWRLFGFETCSYLIQLFSEMFERCTFLGGDPGKASEIIGNNFRKIINLR-KS 435 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + S+E A ++ + +N L + + G Sbjct: 436 KYQSVEQFAGIMYGLGGGLALALYTSYGVAHMVNNLYTSLEIPEAMITVINVIAPG 491 >gi|293603722|ref|ZP_06686141.1| type II secretion pathway protein XcpS [Achromobacter piechaudii ATCC 43553] gi|292817896|gb|EFF76958.1| type II secretion pathway protein XcpS [Achromobacter piechaudii ATCC 43553] Length = 397 Score = 36.6 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 16/135 (11%), Positives = 44/135 (32%), Gaps = 8/135 (5%) Query: 29 AGLPVSDAVAVIVG---QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 AGL + +A+ + + + +++ +++ + + G LS+++ P Sbjct: 73 AGLALIEALEALSDKAGRGNKALQASLGQLLRSLYQGQPLSKAMEAQPLVYP-----ALL 127 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 ++ G L L +N++ KV + + + + V Sbjct: 128 VATVASAEGSGQLPVVLRRYQYYETRIENIRKKVVGALVYPLVVIAVGFGILLFMLFFVV 187 Query: 146 FTSPGYMNVLINDPR 160 + + P Sbjct: 188 PRFAVVFESMRSLPA 202 >gi|307265192|ref|ZP_07546751.1| Type II secretion system F domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306919814|gb|EFN50029.1| Type II secretion system F domain protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 218 Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 7/134 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P+ A+ V+ + V +E ++ E GL LSE + R+ + P Sbjct: 86 FTRTLGTLISAGVPLMKAMEVVEKVMGNTVVAEGLKKAQEDIKKGLPLSEPLKRIGIFPP 145 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G+L L + + +E + + Sbjct: 146 M------VIQMISIGESSGSLDSILNKTADFYDGEVDTAVSQMTTLLEPLIIVMLATVVG 199 Query: 138 FCVSTLVYFTSPGY 151 F V ++V Y Sbjct: 200 FIVISIVMPLFQLY 213 >gi|294666184|ref|ZP_06731439.1| type II secretion system protein F [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604049|gb|EFF47445.1| type II secretion system protein F [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 400 Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 40/130 (30%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMP 77 + V +GLP+ + + + + ++ G SL+ ++ R + P Sbjct: 268 MARTLAIMVNSGLPLMEGLMIAARTVDNRALRLATDTMVTAIREGGSLAAALKRAAVFPP 327 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + G L+ L + L +E + G + Sbjct: 328 ------TLLYMASSGENSGRLAPMLERAADYLEREFEAFTTAAMSLLEPAIIVLLGGVVA 381 Query: 138 FCVSTLVYFT 147 V +++ Sbjct: 382 VIVLSILLPI 391 >gi|171463004|ref|YP_001797117.1| type II secretion system protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192542|gb|ACB43503.1| type II secretion system protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 280 Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 45/133 (33%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + +++ LP+ DA+ V S+ + +F I +HL S + + Sbjct: 142 LTYWCRTLGHLLKSSLPLPDALRVTAQSSNHWLSHDFSAEIFIKHLTRGWSLGDAIIKAD 201 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + G L++ L + IL + + + + S+E + Sbjct: 202 PRHSLFDLETLQLLRIASESGALADMLQRRATILSSQLSNRLNTLSHSLEPLLIIVVGLI 261 Query: 136 LPFCVSTLVYFTS 148 + V L Sbjct: 262 IGSLVIILYLPIF 274 >gi|226303995|ref|YP_002763953.1| hypothetical protein RER_05060 [Rhodococcus erythropolis PR4] gi|226183110|dbj|BAH31214.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length = 194 Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 LD++ +RAGLPVS A+ + + P+ RV + LG + S + Sbjct: 55 LDLLGACLRAGLPVSAAITAMASTAPKPMADTLSRVADLLTLGADPDAAWSEAALDPDTE 114 Query: 80 EVSFF 84 ++ Sbjct: 115 ALARM 119 >gi|327412695|emb|CAX67691.1| putative Type IV pilus integral membrane protein (PilR) [Yersinia enterocolitica] Length = 369 Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 61/187 (32%), Gaps = 20/187 (10%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHLGLSLSES 68 ++ F +AL + + G P+ A+ +I + +++ LS + + Sbjct: 30 RYRLQFYDALRFL---LENGNPLGVALQMIAEVHTDFGKHWHPYGDLVDDCLESLSDNGA 86 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + + G L EAL +++ R+ + V +S+ Sbjct: 87 GRTFENVLAAWGPLEEA-ALISAGMRSGKLPEALLQAGKLVEARRRILTLVSKMSLYPLL 145 Query: 129 SAWIIGSLPFCVSTLVYFTSP------------GYMNVL--INDPRGHMLLGVAAAFMLI 174 + G + + T G+M+ L D +G +G A + + Sbjct: 146 LFCLGGGMLVINGAYLIPTLRKLSDPQDWSGALGFMHALTNFTDRQGIAAMGAVAILIGL 205 Query: 175 GIMVMRL 181 + + Sbjct: 206 VLWSIPR 212 >gi|148238355|ref|YP_001223742.1| Type II secretory pathway, component PulF [Synechococcus sp. WH 7803] gi|147846894|emb|CAK22445.1| Type II secretory pathway, component PulF [Synechococcus sp. WH 7803] Length = 411 Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 15/136 (11%), Positives = 44/136 (32%), Gaps = 7/136 (5%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRY 75 I RAG+P+ ++ + + + + G+ LS +++R Sbjct: 278 AQFCRIFSSLTRAGVPILMSLEISSETAGNSIISDAILESRGLVQEGVLLSTALTR---- 333 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + + + G + + L+ ++ D + K +E + G Sbjct: 334 --QKVLPEMALSMLSIGEETGEMDQMLSKVADFYEDEVSASVKALTSMLEPAMIVVVGGI 391 Query: 136 LPFCVSTLVYFTSPGY 151 + + + + Sbjct: 392 VGSILLAMYLPMFTVF 407 >gi|146351306|ref|YP_001210533.1| putative typeII /IV secretion system integral membrane protein, TadC related [Arthrobacter nitroguajacolicus] gi|146218870|emb|CAL09941.1| putative typeII /IV secretion system integral membrane protein, TadC related [Arthrobacter nitroguajacolicus] Length = 294 Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 15/147 (10%), Positives = 50/147 (34%), Gaps = 1/147 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQ 59 +K + +F +++ R G P A++ G + V R + ++ Sbjct: 140 VKQQAVEAREEFSRAVATYFELVAAERRRGSPAQHALSEAAGVADSWVFRRIRQELLRAS 199 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 ++ + + ++E+ + ++ + + + E+L + LR + Sbjct: 200 LQSQMPWNALRELSEEIGVKELRDLADIMQLSGEEDAAVYESLRARGKSLRSQMVTDEHQ 259 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146 + + + + ++ L+ Sbjct: 260 EGNKQTERMTVPMTLLGAVFMAILITA 286 >gi|83649539|ref|YP_437974.1| pilus-assembl protein PilC [Hahella chejuensis KCTC 2396] gi|83637582|gb|ABC33549.1| probable pilus-assembl protein PilC [Hahella chejuensis KCTC 2396] Length = 326 Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 19/172 (11%), Positives = 56/172 (32%), Gaps = 5/172 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + L + V+ GL + A+A + + + ++ + +SL + Sbjct: 8 NSNLSQLLRHLNHQVQQGLSLEQALARLEPLLPAHAQPQVEQLKKVLQGDVSLHATPY-- 65 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN-MKAKVQALSMEAKASAW 131 + P ++S + ++ + E + S + + VQ+L A Sbjct: 66 -QDSPFYDLSRLAAIVRAKGGSLSGFLERYISHSHAMEVSWRGVWDGVQSLLGYVFALLM 124 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + + V + + + + L + + + + ++I Sbjct: 125 VAIIVFSVLLIKVLPGFQAFYSEMNMELPAFT-LTLISGMETFQSVWIFVLI 175 >gi|14325280|dbj|BAB60184.1| TVG1068265 [Thermoplasma volcanium GSS1] Length = 279 Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 20/182 (10%), Positives = 57/182 (31%), Gaps = 8/182 (4%) Query: 8 RTAKFLDDFP----NALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ-HL 61 R + L I +G+PV + I S + E +R++ L Sbjct: 96 RQKWIARQVSLRITDFLAITYSLSLSGIPVDRILRDISNMDSLGEIAKESKRIVVMMDRL 155 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G ++ + + ++S + + L ++ + + K+K+ Sbjct: 156 GYDFLTALEKAEKITASDDLSRIWAGLRLSILLDTDIVAYFRDRIDYYSRVQENKSKLSL 215 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 S+ + +++ + F + + + N ++ + L + + Sbjct: 216 DSLGLASESFVALVIAFPLLIFMTGSIISIKN--LSTIFFVISLIIVLGASAVMFYFTSK 273 Query: 182 MI 183 + Sbjct: 274 IT 275 >gi|307325196|ref|ZP_07604399.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] gi|306889000|gb|EFN19983.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] Length = 299 Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 40/103 (38%), Gaps = 1/103 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +R + LD+ V S+ G V A+ V S+ R + Sbjct: 144 VRKAAAERRRQMRHTLTLILDLTVISLAGGAGVQQALTDAVQAPHGWAASKLRHALRVAQ 203 Query: 61 L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102 L S + + + +++ + +++ + +S+ G + +L Sbjct: 204 LTRTSPWQHLGDLGQHLQVSDLTELAATLSLAGTEGAKVRASL 246 >gi|313140674|ref|ZP_07802867.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] gi|313133184|gb|EFR50801.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] Length = 171 Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 17/139 (12%), Positives = 45/139 (32%), Gaps = 1/139 (0%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P + ++ S+R+G+ V+ ++ + + V + H G S ++ + Sbjct: 33 LPLLIGLLSVSLRSGMSVTRSLEGVGEAVGGALGGGLCAVADALHRGSSWKDAWNAADFG 92 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIG 134 + + V+ G + L S + + + + A + Sbjct: 93 DYAETSAILRGVLEPSWTRGVSPIGPLTTASEQWMEGERTAIEQESASLSVKLLLPTGLC 152 Query: 135 SLPFCVSTLVYFTSPGYMN 153 LP V + + ++ Sbjct: 153 MLPAFVFLGILPSVMAFVG 171 >gi|254513427|ref|ZP_05125492.1| Bacterial type II secretion system protein F domain [Rhodobacteraceae bacterium KLH11] gi|221532431|gb|EEE35427.1| Bacterial type II secretion system protein F domain [Rhodobacteraceae bacterium KLH11] Length = 347 Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 57/159 (35%), Gaps = 7/159 (4%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 ++ V AGL +SDA+ S + + ++ G+ E R+ Y P E Sbjct: 24 RLVADLVEAGLLLSDALETAATVSREQGKGVVADILLDIREGVRDDEFEDRINLYAPGDE 83 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + G R+ + + ++ + ++G++ + + Sbjct: 84 ------ALLFHNIAGAGAEAVFRAARRLAELQDKVHRAFRSALAQPLLGFVLLGAVAYML 137 Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 T + T ++ + N P G L+ + + I ++ Sbjct: 138 GTSFFPTMQQ-ISPMANWPLGGQLIARFSIWFSANIWIV 175 >gi|325922193|ref|ZP_08183980.1| type II secretion system protein F [Xanthomonas gardneri ATCC 19865] gi|325547312|gb|EGD18379.1| type II secretion system protein F [Xanthomonas gardneri ATCC 19865] Length = 400 Score = 36.3 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 14/129 (10%), Positives = 37/129 (28%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + V +GLP+ + + + + + T ++ ++ E S Sbjct: 268 MARTLAIMVNSGLPLMEGLMIAARTVDNRALR-----LATDNMVTAIREGGSLAAAMKRA 322 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 ++ + G L+ L + L +E + G + Sbjct: 323 GVFPPTLLYMASSGENSGRLAPMLERAADYLEREFESFTTAAMSLLEPAIIVLLGGVVAV 382 Query: 139 CVSTLVYFT 147 V +++ Sbjct: 383 IVLSILLPI 391 >gi|332297953|ref|YP_004439875.1| Type II secretion system F domain protein [Treponema brennaborense DSM 12168] gi|332181056|gb|AEE16744.1| Type II secretion system F domain protein [Treponema brennaborense DSM 12168] Length = 317 Score = 36.3 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 41/135 (30%), Gaps = 5/135 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 LDI++ + +GL + A+AV+ + +I G S+S Sbjct: 10 FLDILISLLESGLELPAALAVV--NTQKRTAFYADGIIREMKQGKPFSQS---FAAVCSG 64 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 T + V G L+ + + +RD + ++ I Sbjct: 65 PLKRNRFTTVYVPLIRAGELTGTVLPVLVFIRDEIQQDTDERKNTLTVLLYPAAIMLCAL 124 Query: 139 CVSTLVYFTSPGYMN 153 + + Y+ Sbjct: 125 IGTVFLLTAGIPYLE 139 >gi|13541844|ref|NP_111532.1| hypothetical protein TVN1013 [Thermoplasma volcanium GSS1] Length = 282 Score = 36.3 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 20/182 (10%), Positives = 57/182 (31%), Gaps = 8/182 (4%) Query: 8 RTAKFLDDFP----NALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ-HL 61 R + L I +G+PV + I S + E +R++ L Sbjct: 99 RQKWIARQVSLRITDFLAITYSLSLSGIPVDRILRDISNMDSLGEIAKESKRIVVMMDRL 158 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G ++ + + ++S + + L ++ + + K+K+ Sbjct: 159 GYDFLTALEKAEKITASDDLSRIWAGLRLSILLDTDIVAYFRDRIDYYSRVQENKSKLSL 218 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 S+ + +++ + F + + + N ++ + L + + Sbjct: 219 DSLGLASESFVALVIAFPLLIFMTGSIISIKN--LSTIFFVISLIIVLGASAVMFYFTSK 276 Query: 182 MI 183 + Sbjct: 277 IT 278 >gi|238062253|ref|ZP_04606962.1| hypothetical protein MCAG_03219 [Micromonospora sp. ATCC 39149] gi|237884064|gb|EEP72892.1| hypothetical protein MCAG_03219 [Micromonospora sp. ATCC 39149] Length = 312 Score = 36.3 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 39/97 (40%) Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 + + + G L+E L + R A A + A+A+AW++ +LP L Y Sbjct: 207 AAVRLADRTGAPLAELLERIEADARAADRGLAAAAAQAAGARATAWLLAALPLGGIGLGY 266 Query: 146 FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + VL++ P G A +G++ + Sbjct: 267 GVGVDPVAVLLHTPVGGGCAVAAVVLQFVGLLWTERL 303 >gi|254453217|ref|ZP_05066654.1| transposase [Octadecabacter antarcticus 238] gi|198267623|gb|EDY91893.1| transposase [Octadecabacter antarcticus 238] Length = 188 Score = 36.3 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 15/114 (13%), Positives = 32/114 (28%), Gaps = 1/114 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++R L++ + +I G PV A + L Sbjct: 32 KKRRRRLTVLNELADFTRLITALKDYGRPVRAAFEATGNYHRA-LAYHLTTAGFEVKLVS 90 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 S++ + +R + + + + GN L R D + + Sbjct: 91 SVALARTREALHNSWDKNDPKDAQVILHMMEIGNEQFYHDPLVRGTNDIQELSK 144 >gi|119025149|ref|YP_908994.1| hypothetical protein BAD_0131 [Bifidobacterium adolescentis ATCC 15703] gi|154486515|ref|ZP_02027922.1| hypothetical protein BIFADO_00330 [Bifidobacterium adolescentis L2-32] gi|118764733|dbj|BAF38912.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703] gi|154084378|gb|EDN83423.1| hypothetical protein BIFADO_00330 [Bifidobacterium adolescentis L2-32] Length = 171 Score = 36.3 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 17/141 (12%), Positives = 47/141 (33%), Gaps = 10/141 (7%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P L+++ ++R G + A+ + R E + G+ +E+ Sbjct: 40 LPLILEMLSVAIRQGASIPRALITVGNIVEGEFGGGLRSAGERLNSGMPWNEA------- 92 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD-RKNMKAKVQALSMEAKASAWIIG 134 + + V S + S + L+ + + +++++ + + + Sbjct: 93 --WPDDDDCAVVRDAFSSSWSSGSSPVNRLATAIEQLDWDERSRIEQSAAKLSIRLLLPT 150 Query: 135 SLPFCVSTLVYFTSPGYMNVL 155 L + + P M+ L Sbjct: 151 GLCMLPAFVAIGVIPAVMSFL 171 >gi|238026149|ref|YP_002910380.1| type IV pilus biogenesis protein PilC [Burkholderia glumae BGR1] gi|237875343|gb|ACR27676.1| Type IV pilus biogenesis protein PilC [Burkholderia glumae BGR1] Length = 402 Score = 36.3 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 47/156 (30%), Gaps = 6/156 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + +RAGLP++ A+ ++ + + G LSE++ + R Sbjct: 68 FTHQLGGLLRAGLPLAPALELLADAGGHRDLPRIAAGLARAIGAGRQLSEAMRQYPRQFD 127 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G L+ LA ++ +A+V+ A ++ Sbjct: 128 P-----MFRQLVAVGEASGTLAPLLARVAADRERGAAQRARVRTALAYPLAVLAFSLAIS 182 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + V T + + + + Sbjct: 183 AALLVWVVPTFAQIFDGFGARLPAPTRFVLTLSATV 218 Score = 34.3 bits (77), Expect = 7.7, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 41/128 (32%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + +RAG P++DA + + +PV I + L R P + Sbjct: 274 RTLGTLLRAGTPLADAFDSLAQATGNPVFDRATDAIAARLLRGERLAQAMRAAGCFPDEV 333 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 V + + G L LA+++ + + + + + E + + V Sbjct: 334 VQPVAVA-----EESGTLDAMLADIATLCERQVDEQIALLTSLCEPLVVIVLGALVGGLV 388 Query: 141 STLVYFTS 148 + Sbjct: 389 VAMYLPIV 396 >gi|123443755|ref|YP_001007726.1| general secretion pathway protein F [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090716|emb|CAL13592.1| general secretion pathway protein F [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 405 Score = 36.3 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 55/161 (34%), Gaps = 9/161 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 +D + V A LP+ +A+ + QS R+ +V G L+++++ Sbjct: 66 NDLVLLTRQLSTLVAAALPLEEALLALAQQSEKPRHRALLEQVRNKILEGQPLADALASF 125 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + G+L L L+ + +K+K+ + + Sbjct: 126 PKT-----FTLLFRTMVAAGEASGHLDNVLLRLADNAEQSQKLKSKMLQAMIYPL---VL 177 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 V+ L+ P + I+ + L A + Sbjct: 178 TVVAIAVVAILLTAVVPKVIEQFIHMQQALPLSTRALISLS 218 >gi|332283579|ref|YP_004415490.1| type II secretion system protein F [Pusillimonas sp. T7-7] gi|330427532|gb|AEC18866.1| type II secretion system protein F [Pusillimonas sp. T7-7] Length = 370 Score = 36.3 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 3/125 (2%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L ++G+P+ A+A + ++ +++ + G +L S P Sbjct: 241 FLYTFAVLQKSGIPIQTALASLAQNANPWLKTRISAAMYGVRQGYNLGTSFRNAGHDFPD 300 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 E + S L E N L D N K + + L Sbjct: 301 WEALPVMETMGSLSGSDDALIEYAEN---WLEDTANQIQKFSRRLSAISMAWVAVCILLL 357 Query: 139 CVSTL 143 +S + Sbjct: 358 ALSVI 362 >gi|160893679|ref|ZP_02074463.1| hypothetical protein CLOL250_01233 [Clostridium sp. L2-50] gi|156864664|gb|EDO58095.1| hypothetical protein CLOL250_01233 [Clostridium sp. L2-50] Length = 290 Score = 36.3 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 15/142 (10%), Positives = 46/142 (32%), Gaps = 2/142 (1%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K + + + P + + + ++A V + G + + E ++ + Sbjct: 139 KAKREEIEGELPRMVATMEQELKASRNVIGMLERFKGNAGPALTGELDILLADMRS-SNY 197 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++R + +S + + + + L+ + + + K QA + Sbjct: 198 EAALTRFEARLNSPMLSDVVRGLIGVLRGDDS-TVYFQMLAHDFKQIELQRLKAQAQKIP 256 Query: 126 AKASAWIIGSLPFCVSTLVYFT 147 K + L + T + Sbjct: 257 PKIRVFSFVMLVCFLLTYLAII 278 >gi|254513604|ref|ZP_05125668.1| hypothetical protein RKLH11_4282 [Rhodobacteraceae bacterium KLH11] gi|221532113|gb|EEE35110.1| hypothetical protein RKLH11_4282 [Rhodobacteraceae bacterium KLH11] Length = 348 Score = 36.3 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 59/163 (36%), Gaps = 6/163 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 ++ + +GL +SDA+ + + + V+ G+ +E R+ RY P E Sbjct: 24 RLVADLMDSGLMLSDALETAADVAREQRKDTVAAVLLDIREGIPRAEFEERVSRYAPGAE 83 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + ++ + A+ ++ R+ ++ + + + L + Sbjct: 84 --ALLFRMVGSAESSRVVRAAMRLAAQSDTLRRALRTALARPILMLVLVGVVFQMLGTSL 141 Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVA----AAFMLIGIMVM 179 ++ T+P L G + + A + IG+ ++ Sbjct: 142 YPVLAQTAPMSQWPLPAQWLGAFCIWFSANQWAVLVCIGLAII 184 >gi|116074293|ref|ZP_01471555.1| pili biogenesis protein [Synechococcus sp. RS9916] gi|116069598|gb|EAU75350.1| pili biogenesis protein [Synechococcus sp. RS9916] Length = 424 Score = 36.3 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 14/135 (10%), Positives = 41/135 (30%), Gaps = 5/135 (3%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 I RAG+P+ ++ + + + + ++ T L + Sbjct: 291 AQFCRIFSSLTRAGVPILMSLEISSETAGNSIIADAILESRTLVQEGVL-----LSTALI 345 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 Q + + + + G + + L+ ++ D + K +E + G + Sbjct: 346 RQQVLPEMALSMLAIGEETGEMDQMLSKVADFYEDEVSAAVKALTSMLEPAMIVVVGGIV 405 Query: 137 PFCVSTLVYFTSPGY 151 + + + Sbjct: 406 GSILLAMYLPMFTVF 420 >gi|229093305|ref|ZP_04224420.1| ComG operon protein 2 [Bacillus cereus Rock3-42] gi|228690088|gb|EEL43885.1| ComG operon protein 2 [Bacillus cereus Rock3-42] Length = 315 Score = 36.3 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 7/132 (5%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + GL V +A+ +++ Q + E R+ G L I++ Sbjct: 184 YFATQLSGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIAGEPLQSIIAK----- 238 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + + I Q GNL+ L + S ++ ++ K K + ++ I G + Sbjct: 239 -SEYYEEELSYIITHGQANGNLAIELGDYSDLIMEKMERKIKRMLVIIQPILFTCIGGIV 297 Query: 137 PFCVSTLVYFTS 148 ++ Sbjct: 298 VLMYLAMIMPMF 309 >gi|89897405|ref|YP_520892.1| hypothetical protein DSY4659 [Desulfitobacterium hafniense Y51] gi|89336853|dbj|BAE86448.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 316 Score = 36.3 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 16/152 (10%), Positives = 48/152 (31%), Gaps = 2/152 (1%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K++ + + P + I ++++A V + + E + S Sbjct: 165 KEKREQIEGELPRFVSTIEQTLKASRDVLAMMENYKKNAGPAFARELDVLTADMRS-SSY 223 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++R + +S + + + + L+ + + + K A + Sbjct: 224 EAALTRFEARLNSPMLSDVVRGLIGVLRGDDS-TVYFQMLAHDFKALELQRLKSLAQKIP 282 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 K + L + T + + ++ L Sbjct: 283 PKIRIFSFIMLMCFLLTYLAIIAMEILSSLGT 314 >gi|65321622|ref|ZP_00394581.1| COG1459: Type II secretory pathway, component PulF [Bacillus anthracis str. A2012] gi|165873272|ref|ZP_02217881.1| comG operon protein 2 [Bacillus anthracis str. A0488] gi|167638556|ref|ZP_02396832.1| comG operon protein 2 [Bacillus anthracis str. A0193] gi|170709330|ref|ZP_02899746.1| comG operon protein 2 [Bacillus anthracis str. A0389] gi|164710989|gb|EDR16557.1| comG operon protein 2 [Bacillus anthracis str. A0488] gi|167513404|gb|EDR88774.1| comG operon protein 2 [Bacillus anthracis str. A0193] gi|170125756|gb|EDS94667.1| comG operon protein 2 [Bacillus anthracis str. A0389] Length = 345 Score = 36.3 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 7/132 (5%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + GL V +A+ +++ Q + E R+ G L I++ Sbjct: 214 YFATQLSGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIAGEPLQSIIAK----- 268 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + + I Q GNL+ L + S ++ ++ K K + ++ I G + Sbjct: 269 -SEYYEEELSYIITHGQANGNLAIELGDYSDLIMEKMERKIKRMLVIIQPILFTCIGGIV 327 Query: 137 PFCVSTLVYFTS 148 ++ Sbjct: 328 VLMYLAMIMPMF 339 >gi|70732017|ref|YP_261762.1| integral membrane protein [Pseudomonas fluorescens Pf-5] gi|68346316|gb|AAY93922.1| integral membrane protein, putative [Pseudomonas fluorescens Pf-5] Length = 388 Score = 36.3 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 13/126 (10%), Positives = 44/126 (34%), Gaps = 2/126 (1%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L + +R+G+ DA+ ++ + +R + G + +++ P Sbjct: 255 FLMNMSVMLRSGINQLDALTILKRGAPPWLRERLDAIHYGVRSGKNFGQALKLAGHRFPD 314 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + V++V+ ++ + + + + ++A + L + ++ L Sbjct: 315 AMAIHYLEVLAVRKGFAESMERFASR--WLEQTLRKVEATSKFLIAFSSVCMGVLMILVV 372 Query: 139 CVSTLV 144 + Sbjct: 373 VGIFQM 378 >gi|33864557|ref|NP_896116.1| pili biogenesis protein [Synechococcus sp. WH 8102] gi|33632080|emb|CAE06533.1| pili biogenesis protein [Synechococcus sp. WH 8102] Length = 357 Score = 36.3 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 13/135 (9%), Positives = 39/135 (28%), Gaps = 5/135 (3%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 I RAG+P+ ++ + + + + S+ L + Sbjct: 224 AQFCRIFSSLTRAGVPILMSMEISSQTAGNSIISDAILASREMVQEGVL-----LSTALI 278 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + + + + + G + + L+ ++ D K +E + G + Sbjct: 279 RQKVLPDMALNMLAIGEETGEMDKMLSKVADFYEDEVGAMVKALTSMLEPAMIVVVGGIV 338 Query: 137 PFCVSTLVYFTSPGY 151 + + + Sbjct: 339 GSILLAMYLPMFTVF 353 >gi|332238623|ref|XP_003268503.1| PREDICTED: fibronectin type III and SPRY domain-containing protein 2 [Nomascus leucogenys] Length = 750 Score = 36.3 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 13/105 (12%), Positives = 37/105 (35%), Gaps = 11/105 (10%) Query: 31 LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISV 90 +P+++A+ + + +++IE ++ L E + QE + Sbjct: 204 IPLNEALESAKDEIHKNMYKLEKQIIEMENFANHLEEVFITVEENFGKQEQN-------- 255 Query: 91 QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + +E L L++ ++ + + +EA + Sbjct: 256 ---FESHYNEILETLAQKYEEKIQALGEKKKEKLEALYGQLVSCG 297 >gi|229198371|ref|ZP_04325077.1| ComG operon protein 2 [Bacillus cereus m1293] gi|228585071|gb|EEK43183.1| ComG operon protein 2 [Bacillus cereus m1293] Length = 315 Score = 36.3 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 7/132 (5%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + GL V +A+ +++ Q + E RV G L I++ Sbjct: 184 YFATQLSGLLHGGLSVLEALTIMMEQKYQPFFQYEAGRVKHQLIAGEPLQSIIAKSG--- 240 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + I Q GNL+ L + S ++ ++ K K + ++ I + Sbjct: 241 ---YYEEELSYIITHGQANGNLAIELGDYSDLIMEKMEQKIKRMLVIIQPILFTCIGAIV 297 Query: 137 PFCVSTLVYFTS 148 ++ Sbjct: 298 VLMYLAMIMPMF 309 >gi|258510585|ref|YP_003184019.1| hypothetical protein Aaci_0582 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477311|gb|ACV57630.1| hypothetical protein Aaci_0582 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 294 Score = 36.3 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 16/166 (9%), Positives = 44/166 (26%), Gaps = 2/166 (1%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL- 61 I+ R V +R +P+ +A+ I ++ RR + Sbjct: 129 RRIQARRRDAAWQVRQLKRRFVSLLRRRIPLEEALWQIAKDAAAQRTDFGRRFVARMQEA 188 Query: 62 -GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +L +++ + + E++ F I + + + Sbjct: 189 RVRALGDALHDLAEEFRVPELTRFVQAIRHAEANSLGSLADILETQIRDESAQLDELVEA 248 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 + + + + + + I +G + L Sbjct: 249 EKNAMQLKLRMMSVVMFVYILGWAGYFAFAVFRHQIQTGQGILGLF 294 >gi|219521259|gb|AAI44182.1| FSD2 protein [Homo sapiens] Length = 704 Score = 36.3 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 13/105 (12%), Positives = 37/105 (35%), Gaps = 11/105 (10%) Query: 31 LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISV 90 +P+++A+ + + +++IE ++ L E + QE + Sbjct: 203 IPLNEALESAKDEIHKNMYKLEKQIIEMENFANHLEEVFITVEENFGKQEQN-------- 254 Query: 91 QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + +E L L++ ++ + + +EA + Sbjct: 255 ---FESHYNEILETLAQKYEEKIQALGEKKKEKLEALYGQLVSCG 296 >gi|219521257|gb|AAI44176.1| FSD2 protein [Homo sapiens] Length = 704 Score = 36.3 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 13/105 (12%), Positives = 37/105 (35%), Gaps = 11/105 (10%) Query: 31 LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISV 90 +P+++A+ + + +++IE ++ L E + QE + Sbjct: 203 IPLNEALESAKDEIHKNMYKLEKQIIEMENFANHLEEVFITVEENFGKQEQN-------- 254 Query: 91 QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + +E L L++ ++ + + +EA + Sbjct: 255 ---FESHYNEILETLAQKYEEKIQALGEKKKEKLEALYGQLVSCG 296 >gi|119582843|gb|EAW62439.1| hCG2039359 [Homo sapiens] Length = 768 Score = 36.3 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 13/105 (12%), Positives = 37/105 (35%), Gaps = 11/105 (10%) Query: 31 LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISV 90 +P+++A+ + + +++IE ++ L E + QE + Sbjct: 222 IPLNEALESAKDEIHKNMYKLEKQIIEMENFANHLEEVFITVEENFGKQEQN-------- 273 Query: 91 QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + +E L L++ ++ + + +EA + Sbjct: 274 ---FESHYNEILETLAQKYEEKIQALGEKKKEKLEALYGQLVSCG 315 >gi|55741632|ref|NP_001007123.1| fibronectin type III and SPRY domain-containing protein 2 [Homo sapiens] gi|166988404|sp|A1L4K1|FSD2_HUMAN RecName: Full=Fibronectin type III and SPRY domain-containing protein 2; AltName: Full=SPRY domain-containing protein 1 gi|120660424|gb|AAI30570.1| Fibronectin type III and SPRY domain containing 2 [Homo sapiens] gi|193783791|dbj|BAG53773.1| unnamed protein product [Homo sapiens] gi|313883842|gb|ADR83407.1| fibronectin type III and SPRY domain containing 2 [synthetic construct] Length = 749 Score = 36.3 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 13/105 (12%), Positives = 37/105 (35%), Gaps = 11/105 (10%) Query: 31 LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISV 90 +P+++A+ + + +++IE ++ L E + QE + Sbjct: 203 IPLNEALESAKDEIHKNMYKLEKQIIEMENFANHLEEVFITVEENFGKQEQN-------- 254 Query: 91 QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + +E L L++ ++ + + +EA + Sbjct: 255 ---FESHYNEILETLAQKYEEKIQALGEKKKEKLEALYGQLVSCG 296 >gi|302387179|ref|YP_003823001.1| hypothetical protein Closa_2837 [Clostridium saccharolyticum WM1] gi|302197807|gb|ADL05378.1| conserved hypothetical protein [Clostridium saccharolyticum WM1] Length = 290 Score = 36.3 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 18/148 (12%), Positives = 47/148 (31%), Gaps = 2/148 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 + AK + P + I + ++A V + + + E + S Sbjct: 141 KRAKIESELPRFVATITQELKASRDVLGMLENYKKNAGEEFAVELDILTADMRS-SSYEA 199 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +++R + +S + + + L+ ++ + + K QA+ + K Sbjct: 200 ALTRFEARINSPMLSDLTRGLIGVLRGDDGAM-YFQMLAHDMKQLELQRLKAQAMKIPPK 258 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + L + T + + L Sbjct: 259 IRVFSFIMLMCFLLTYIAVIVFEILRSL 286 >gi|308235608|ref|ZP_07666345.1| hypothetical protein GvagA14_05189 [Gardnerella vaginalis ATCC 14018] gi|311113936|ref|YP_003985157.1| hypothetical protein HMPREF0421_20048 [Gardnerella vaginalis ATCC 14019] gi|310945430|gb|ADP38134.1| conserved hypothetical protein [Gardnerella vaginalis ATCC 14019] Length = 205 Score = 36.3 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 17/143 (11%), Positives = 48/143 (33%), Gaps = 10/143 (6%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSD----PVRSEFRRVIETQHLGLSLSESISRMVRY 75 L +++ ++++G+ ++ A+ + +R+ + ++ + S + Sbjct: 62 LQMMIVALKSGVAITRALDAVGSSIPGGKGIWLRNVSKALLSGDTWIEAWSAPYVCFDKK 121 Query: 76 MPLQEVSFFSTVISVQSQLG------GNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 SF ++ QS + +A L + +N+ K + Sbjct: 122 DKNPSASFVLSMWLRQSLRESWSCGSSPVPVLIAILQNYEQSMRNVAKKESSRLSVRLLL 181 Query: 130 AWIIGSLPFCVSTLVYFTSPGYM 152 + LP + + T +M Sbjct: 182 PVGLCFLPAFIFVGILPTVSAFM 204 >gi|307595736|ref|YP_003902053.1| type II secretion system F domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307550937|gb|ADN51002.1| Type II secretion system F domain protein [Vulcanisaeta distributa DSM 14429] Length = 620 Score = 36.3 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 14/148 (9%), Positives = 48/148 (32%), Gaps = 1/148 (0%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQH 60 + + ++ L + ++G + + ++ Sbjct: 379 SMRVVSERWEIDREYAEFLRDVTELRKSGFTPEKTFETLKYTRRYGAFDKYLDTMVRQIR 438 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + E +S ++ + F+ +++ LGG + L L+ +++ ++ Sbjct: 439 YGVPIREVLSSIMPKLHSYYSKVFTFLLTETIDLGGASPQVLDMLASFASSIVSVQENMR 498 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTS 148 A + +I + ++ F+ Sbjct: 499 ARLRPLRYVPYIGAVILIVTLVVLIFSV 526 >gi|313105514|ref|ZP_07791783.1| putative type II secretion system protein [Pseudomonas aeruginosa 39016] gi|310878285|gb|EFQ36879.1| putative type II secretion system protein [Pseudomonas aeruginosa 39016] Length = 298 Score = 36.3 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 8/107 (7%), Positives = 31/107 (28%) Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 ++ + + G+L++ + L+ + +R ++ K+ + + Sbjct: 14 ALAARPRDFPEIYRALVAAGEESGDLAQVMERLADYIEERNALRGKILTAFIYPAVVGVV 73 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + V + D + A+ + + Sbjct: 74 SIGIVIFLLGYVVPQVVSAFSQARQDLPALTRAMLQASDFVRAWGWL 120 Score = 35.5 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 38/130 (29%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+ ++ + G+SL+ ++ Sbjct: 167 FASTLAILGSAGVPLLRALDAARQTLANDCLAQAVEEATAQVREGVSLASALRT------ 220 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 Q T + + G L L ++ L +A +E + G + Sbjct: 221 RQVFPPILTHLIASGEKTGALPPMLDRAAQTLSRDIERRAMGMTALLEPLMIVVMGGVVL 280 Query: 138 FCVSTLVYFT 147 V ++ Sbjct: 281 TIVMAVLMPI 290 >gi|58337050|ref|YP_193635.1| competence protein [Lactobacillus acidophilus NCFM] gi|227903613|ref|ZP_04021418.1| competence protein [Lactobacillus acidophilus ATCC 4796] gi|58254367|gb|AAV42604.1| competence protein [Lactobacillus acidophilus NCFM] gi|227868500|gb|EEJ75921.1| competence protein [Lactobacillus acidophilus ATCC 4796] Length = 334 Score = 36.3 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 63/173 (36%), Gaps = 14/173 (8%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + LD + S+ G +S+++ ++ R ++ G SLSE + ++ Sbjct: 16 EEQLA-FLDYLKNSLNNGFSLSNSIELMPVLWPKQ-RVLMGKLARRMKNGASLSEELIKL 73 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 S S GNL+E L L+ + R ++ K++A A + Sbjct: 74 G-------FSRTMVTQVNLSLQQGNLTECLEQLAILSRLKQEQIKKLRAELSYPLVLAIM 126 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + L + + + ++ G +++ + + GI +I+ Sbjct: 127 MIVLLMFMQSFISMQFNN-----TSEHSGDLVILILIILIGSGIYFFTRIISL 174 >gi|78043922|ref|YP_359488.1| type IV pilus assembly protein PilC [Carboxydothermus hydrogenoformans Z-2901] gi|77996037|gb|ABB14936.1| type IV pilus assembly protein PilC [Carboxydothermus hydrogenoformans Z-2901] Length = 402 Score = 36.3 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 13/131 (9%), Positives = 43/131 (32%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + V+ G+P+ ++ V+ + ++ + G SL+ +++ Sbjct: 271 FSRTMATLVQGGVPMLQSLRVVQKTLGNGEMQKVLELAEDKVREGESLATFLAQ------ 324 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + T + + + G L L + + + +E ++ G + Sbjct: 325 SRWFPPLLTQMMLVGEETGQLDAMLTKAADFYEAEVDAAVGRLSSIIEPVLILFMGGIVG 384 Query: 138 FCVSTLVYFTS 148 + +++ Sbjct: 385 LIIVSIMLPMF 395 >gi|92113785|ref|YP_573713.1| type II secretion system protein [Chromohalobacter salexigens DSM 3043] gi|91796875|gb|ABE59014.1| type II secretion system protein [Chromohalobacter salexigens DSM 3043] Length = 297 Score = 36.3 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 21/154 (13%), Positives = 56/154 (36%), Gaps = 3/154 (1%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIETQHLGLSLSES 68 ++ L + AG+ + + ++ ++ E R V G + E+ Sbjct: 144 LDEEIGLVLQVTRMLWEAGMTLESVLQGLIDNLANTAPETVRELRSVTHKIEAGQAREEA 203 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + + + +++ S GG ++L L+ +LRDR+ + + + K Sbjct: 204 LEEVAGIQASEGLGDLLKLLAQVSASGGGARDSLRTLADLLRDRRRTRLQEAVTRLSGKM 263 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162 S ++ L + ++ + + + G Sbjct: 264 SLVMMVFLFPALLIVLAGPAVLNLAGALATLGGQ 297 >gi|171909897|ref|ZP_02925367.1| Pilus tip-associated protein [Verrucomicrobium spinosum DSM 4136] Length = 409 Score = 36.3 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 42/129 (32%), Gaps = 1/129 (0%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + A + +S A+A+ S EF + + + + + S ++ L Sbjct: 271 FRCLAMLLEANVRLSSALAITAEASWHWQYKEFFERLASH-INVGRTMHESFLIESHWLG 329 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 E + + G +E L ++ D + A +E ++ + F Sbjct: 330 EDGRSICGLIELASETGAGTEMLNEIADDYEDELDGLANQVDKIIEPITIMFLGLMVGFL 389 Query: 140 VSTLVYFTS 148 V + Sbjct: 390 VYAIYAPIF 398 >gi|284052287|ref|ZP_06382497.1| hypothetical protein AplaP_12538 [Arthrospira platensis str. Paraca] Length = 196 Score = 36.3 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 17/164 (10%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + + +GL V ++ VI +S+ + +VI++ G LS + R R Sbjct: 13 LAVLLESGLTVYQSLIVIAKKSNPRLGRYLGKVIKSLGRGEDLSVAFRRAPRIFDW---- 68 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 ++ + + G L E L L+ + ++ + A A+ L Sbjct: 69 -WTASLLDIAATSGALPEMLLQLA-EIEKQQTHRQNFYRSVTIAAATTAFSLLLLLATIL 126 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM----VMRLM 182 + + +ND M L FM+ ++ ++R + Sbjct: 127 YTHEAN-------LNDWLLWMFLAGVVGFMVYKLIPRLPLIRRI 163 >gi|57169052|ref|ZP_00368179.1| general secretory pathway protein F [Campylobacter coli RM2228] gi|57019510|gb|EAL56201.1| general secretory pathway protein F [Campylobacter coli RM2228] Length = 391 Score = 36.3 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 52/170 (30%), Gaps = 9/170 (5%) Query: 1 MKHLIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 +K + K + D F + G+ + DA+ + ++ + Sbjct: 40 IKEIQKASFKRLDDARFILFFQELSLLCEVGISIKDALKEL---DKIYSHKMIAKLCDNL 96 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 +LG +LS + + E+ + SQ G LSE +SR+ ++ + +V Sbjct: 97 NLGQNLSLAFENANFGLTHAEL-----ALIKTSQNTGKLSEFFMQISRLSQNNVENEQRV 151 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 + + + + V L L + Sbjct: 152 KKALRYPLIVFLSVCAAFVLLMLFVVPNFKDLFEDLNLALPFITELIIYI 201 >gi|121583254|ref|YP_973690.1| hypothetical protein Pnap_4884 [Polaromonas naphthalenivorans CJ2] gi|120596512|gb|ABM39948.1| hypothetical protein Pnap_4884 [Polaromonas naphthalenivorans CJ2] Length = 164 Score = 36.3 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 9/116 (7%), Positives = 29/116 (25%), Gaps = 14/116 (12%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 LD + +V AGL F+ T+ + ++++ Sbjct: 63 QMLDSMTAAVEAGLGTPATF--------------FKDFFTTEQDVQNFADALDDYSAEET 108 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + ++ +R+ + + + + + Sbjct: 109 FWVNDRHFNAFIHATNSSEENAVTYPAMAGHIRELFESEREKAKKTAKPTYKKNVN 164 >gi|254238769|ref|ZP_04932092.1| type IV pilus protein PilR [Pseudomonas aeruginosa C3719] gi|126170700|gb|EAZ56211.1| type IV pilus protein PilR [Pseudomonas aeruginosa C3719] Length = 359 Score = 36.3 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 21/170 (12%), Positives = 55/170 (32%), Gaps = 12/170 (7%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHLGLSL 65 R + + + + G+P+ DAVA + + + L Sbjct: 19 RKERLQ-----FYESMSTLLENGVPLKDAVAEVHKIFAHEGQHPFHPVAIASREALMGLS 73 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + + L + ++ GNL +A+ + ++ + ++A + + Sbjct: 74 NGKRLATAMALYLPAQER---ALIEAGEMSGNLVQAMGDAVSLVEAQARIRATIWQALLY 130 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 A + ++ L V+ + + + + G + A A + G Sbjct: 131 PSALSAMMVFLLCIVAYRMVPSLARLSDPV--TWTGPLATLNAIASFVTG 178 >gi|332844585|ref|XP_003314887.1| PREDICTED: LOW QUALITY PROTEIN: fibronectin type III and SPRY domain-containing protein 2-like, partial [Pan troglodytes] Length = 701 Score = 36.3 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 13/105 (12%), Positives = 37/105 (35%), Gaps = 11/105 (10%) Query: 31 LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISV 90 +P+++A+ + + +++IE ++ L E + QE + Sbjct: 203 IPLNEALESAKDEIHKNMYKLEKQIIEMENFANHLEEVFITVEENFGKQEQN-------- 254 Query: 91 QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + +E L L++ ++ + + +EA + Sbjct: 255 ---FESHYTEILETLAQKYEEKIQALGEKKKEKLEALYGQLVSCG 296 >gi|325264355|ref|ZP_08131086.1| putative bacterial type II secretion system protein F domain protein [Clostridium sp. D5] gi|324030426|gb|EGB91710.1| putative bacterial type II secretion system protein F domain protein [Clostridium sp. D5] Length = 350 Score = 35.9 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 19/176 (10%), Positives = 58/176 (32%), Gaps = 9/176 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISR 71 + + I +++G+ + + +++ + S + + V E S+ +++ + Sbjct: 12 NMEVSSFCGQIALILKSGISSLEGITIMLEDASSADEKDILQAVFEYMQETGSMYQALEK 71 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + G L E ++ LS ++ ++ A Sbjct: 72 TGL------FPSYMLHMIQIGEETGTLDEVMSALSEHYDREDSIAKSIKNAVTYPLIMAG 125 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMINF 185 ++ + + V L + G L+G+ A I+ + ++ Sbjct: 126 MMVVVIIVLLVKVMPIFNQVFIQLGTEMTGFSRTLMGIGNAINRYSIVFIVILAVI 181 >gi|297560196|ref|YP_003679170.1| type II secretion system F domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844644|gb|ADH66664.1| Type II secretion system F domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 297 Score = 35.9 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 17/158 (10%), Positives = 49/158 (31%), Gaps = 4/158 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPV-SDAVAVIVGQSSDPVRSEFRRVIETQ 59 ++ KR + + D++V S+ G V + + + + Sbjct: 142 LRDEANKRREQMRRALASFADLVVVSLAGGAGVNGALADAGAAGNGWAMARIRESLRQAT 201 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + S ++ + E + + + + G + +LA ++ LR + + Sbjct: 202 LMRQSPWTALRDLGERYDTPEFAELAASLQLAGADGARIRSSLAAKAKTLRTQFLAEM-- 259 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 ++ + + L P N++ + Sbjct: 260 -DAEAQSATERMSLPVILLFAGFLALLGYPAMSNIMFS 296 >gi|118431779|ref|NP_148458.2| hypothetical protein APE_2207.1 [Aeropyrum pernix K1] gi|116063101|dbj|BAA81219.2| hypothetical protein [Aeropyrum pernix K1] Length = 332 Score = 35.9 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 62/181 (34%), Gaps = 9/181 (4%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGL-SL 65 R + P + R G+PVS + + + +R E + L + Sbjct: 134 RKEGIETELPFFAAYLSIMGRGGVPVSLVIDRVASLKIFKALREEAEMIRTKIRLLGKNP 193 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ V P F + ++G ++ L ++ L +R+ ++ A M Sbjct: 194 LDALEEHVLDSPSSVFRDFILGYTTAVKVGSDVIHYLEIRTQDLFERRLNDIRLLAERMT 253 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND-------PRGHMLLGVAAAFMLIGIMV 178 +++ ++ + ++FT + + ++L I +++ Sbjct: 254 LYLEIYLVVAVIATIVFYIFFTISSVFHGNLGGVASAQYASTTQLILYSFLVLPTINVIM 313 Query: 179 M 179 + Sbjct: 314 L 314 >gi|45359239|ref|NP_988796.1| flagellar assembly protein J [Methanococcus maripaludis S2] gi|45048114|emb|CAF31232.1| flagella accessory protein J [Methanococcus maripaludis S2] Length = 558 Score = 35.9 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 66/181 (36%), Gaps = 13/181 (7%) Query: 15 DFPNALDIIVRSVRA-GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 +FP+ L + SV A G ++D++ + P+ + + + + ++ ++ Sbjct: 331 NFPDFLRSLGDSVSAKGGGMTDSLEYLSSNDFGPLTKDLEGLYKRVSIRVNSQKAWRYFG 390 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + FS + + LGGN A + + R N++ K + S+ + Sbjct: 391 YDTCSYMIQLFSEMFERCTFLGGNAGVAAHMIGKNFRKIINLR-KAKYQSVSQFSGIMYG 449 Query: 134 GSLPFCVSTLVYFTSPGYMNVLIND---PRGHMLLG-------VAAAFMLI-GIMVMRLM 182 + ++ +N L P + + + LI G++V+ + Sbjct: 450 LAGGMALTLYASAGVANMVNGLYTSLDIPDTMISIVNIITPEDFSLIAYLIYGVLVIYSI 509 Query: 183 I 183 + Sbjct: 510 V 510 >gi|307105835|gb|EFN54083.1| hypothetical protein CHLNCDRAFT_136204 [Chlorella variabilis] Length = 658 Score = 35.9 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 6/89 (6%), Positives = 20/89 (22%), Gaps = 2/89 (2%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL--GLSLSESISRMVRY 75 + L ++ +GL + A+ + + + + + Sbjct: 201 DLLAQLILDYESGLSIEAAIQRVRTRMEAWRVQVLLDFYGMSRIGGQHRVLPADVEAAAK 260 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALAN 104 +T + + L Sbjct: 261 HDWPLPFLSATYVRTMLDVHMEERRQLKR 289 >gi|282856392|ref|ZP_06265671.1| general secretion pathway protein F [Pyramidobacter piscolens W5455] gi|282585763|gb|EFB91052.1| general secretion pathway protein F [Pyramidobacter piscolens W5455] Length = 407 Score = 35.9 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 52/138 (37%), Gaps = 7/138 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+S ++ + S P+ + RRV + G S+S ++ P Sbjct: 74 FFRELALFTAAGIPLSVSLQRLAETSRCVPMIKKIRRVCRGVNGGQSMSRAMRDGRFCEP 133 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++ + G LSE+L ++ R+ +++K+ + + ++ Sbjct: 134 VD------RMMLSVGEETGRLSESLTLVAERYERRERLRSKILSALAYPALVLFFSLAVL 187 Query: 138 FCVSTLVYFTSPGYMNVL 155 + V G L Sbjct: 188 LVMFVFVLPKFHGIFARL 205 >gi|229152442|ref|ZP_04280634.1| ComG operon protein 2 [Bacillus cereus m1550] gi|228631050|gb|EEK87687.1| ComG operon protein 2 [Bacillus cereus m1550] Length = 330 Score = 35.9 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 60/174 (34%), Gaps = 20/174 (11%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L + + G + A+ + Q + + +R+IE G SL +S ++ + + Sbjct: 1 MLKRLGELLEKGYSLLQALEFLQFQLPVEKKVQLQRMIEELKDGKSLHDSFHQLKFHQDM 60 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 F++ + G++S AL S +L + + + + + + + F Sbjct: 61 LSYLFYA-------EQHGDISFALQQGSALLYKKDKYRRDMMKIMQYPMFLMFFLLIMLF 113 Query: 139 CVSTLVYFTSPGYMNVLINDPRGH-------------MLLGVAAAFMLIGIMVM 179 ++ + ++ ++L ++ GI+ M Sbjct: 114 IFKLILLPQVEIVYSSFGSNTPLLTEKILSAIKLLPYIILVAILTVIIGGILYM 167 >gi|12247873|gb|AAG50067.1|AF333233_11 FlaJ [Methanococcus maripaludis] Length = 558 Score = 35.9 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 66/181 (36%), Gaps = 13/181 (7%) Query: 15 DFPNALDIIVRSVRA-GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 +FP+ L + SV A G ++D++ + P+ + + + + ++ ++ Sbjct: 331 NFPDFLRSLGDSVSAKGGGMTDSLEYLSSNDFGPLTKDLEGLYKRVSIRVNSQKAWRYFG 390 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + FS + + LGGN A + + R N++ K + S+ + Sbjct: 391 YDTCSYMIQLFSEMFERCTFLGGNAGVAAHMIGKNFRKIINLR-KAKYQSVSQFSGIMYG 449 Query: 134 GSLPFCVSTLVYFTSPGYMNVLIND---PRGHMLLG-------VAAAFMLI-GIMVMRLM 182 + ++ +N L P + + + LI G++V+ + Sbjct: 450 LAGGMALTLYASAGVANMVNGLYTSLDIPDTMISIVNIITPEDFSLIAYLIYGVLVIYSI 509 Query: 183 I 183 + Sbjct: 510 V 510 >gi|311030866|ref|ZP_07708956.1| comG operon protein 2 [Bacillus sp. m3-13] Length = 326 Score = 35.9 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 15/151 (9%), Positives = 48/151 (31%), Gaps = 7/151 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + G + +A+ ++ + IE G S+ + + + + Sbjct: 1 MGDLYTNGYSLLEALELMSIHFEAEKKRSLLEAIEELKKGYSVHQVLESL-------HFN 53 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + SQ GNL +A + +L ++ + K+ ++ +++ + V Sbjct: 54 QDILSLLFFSQKHGNLGQAFRSGGALLERKRFYRDKIFSILRYPIMLLFLVTIMLVFVQL 113 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 ++ + + + + + Sbjct: 114 VLLPQFHLLFSQMNISLSPIISVFFFLVVQI 144 >gi|29840701|ref|NP_829807.1| general secretion pathway protein F [Chlamydophila caviae GPIC] gi|29835051|gb|AAP05685.1| general secretion pathway protein F [Chlamydophila caviae GPIC] Length = 391 Score = 35.9 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 58/171 (33%), Gaps = 8/171 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65 +R + ++ +R+GLP+ ++++ + Q + +E G SL Sbjct: 48 RRVRVKNSELIIFSKQMLLLLRSGLPLYESLSSLRYQYQGQRISGLLTAFMENLRSGGSL 107 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S++++ F + + GNL L N+ +L +R+ M K+ A Sbjct: 108 SQAMAAYPD-----VFDTFYRSAVLAGESVGNLEGCLQNIIVVLEEREQMSKKLMAALSY 162 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 ++ V + + +P + + + + Sbjct: 163 PIVLLVFSVAVILFFLMGVIPSLKETFENM--EPNTLTSIVFSLSDFVCNY 211 >gi|254492278|ref|ZP_05105452.1| Bacterial type II secretion system protein F domain [Methylophaga thiooxidans DMS010] gi|224462603|gb|EEF78878.1| Bacterial type II secretion system protein F domain [Methylophaga thiooxydans DMS010] Length = 217 Score = 35.9 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 17/136 (12%), Positives = 42/136 (30%), Gaps = 7/136 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRM 72 +AG+P+ +A+ + G + + V E + + G L++++ Sbjct: 82 AAIARFSRTFSTMFKAGVPMVEAMTSVAGATGNVVYGEATLDMRDEVSTGTQLNKAML-- 139 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + G+L LA ++ + ME ++ Sbjct: 140 ----DTELFPNMVVQMVAIGEESGSLDSMLAKVADFFEREVDDAVDNMTALMEPIIMVFL 195 Query: 133 IGSLPFCVSTLVYFTS 148 G + V + Sbjct: 196 GGIVGTLVIAMYLPIF 211 >gi|56420969|ref|YP_148287.1| DNA transport protein [Geobacillus kaustophilus HTA426] gi|56380811|dbj|BAD76719.1| DNA transport machinery [Geobacillus kaustophilus HTA426] Length = 338 Score = 35.9 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 17/137 (12%), Positives = 42/137 (30%), Gaps = 7/137 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + R + G P+ A+ + Q+ R E R ++ GL L ++ + Sbjct: 10 FFTRLGRLLERGYPLGQALEFLAIQAPTHRRMEVERCLQQLRAGLPLFAAVEALS----- 64 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 V + + ++ G+L +A L + ++ S ++ + Sbjct: 65 --VDRMAVNLLFFAERHGDLPRGMAETGEALAQKARFHEQLHRFSRYPLFLLSLLIIMLV 122 Query: 139 CVSTLVYFTSPGYMNVL 155 + + Sbjct: 123 LMEWWLLPQFERAAAAF 139 >gi|240141997|ref|YP_002966507.1| putative Type II secretion system protein [Methylobacterium extorquens AM1] gi|240011941|gb|ACS43166.1| putative Type II secretion system protein [Methylobacterium extorquens AM1] Length = 411 Score = 35.9 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 17/145 (11%), Positives = 52/145 (35%), Gaps = 7/145 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 ++ L R + GL ++DAVA+ + T Sbjct: 70 NEIQLLLTEWARCLDVGLTIADAVAISADGRMGTKLGRTADAVRTALHQG----VPLHRA 125 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 ++ + + + G L+ L++L+ L ++ +++++++ + +++ Sbjct: 126 MAEHTPRLTSAALSVIEVGERSGQLASTLSHLTERLGNQGRLRSEIRSALVYPA---FVV 182 Query: 134 GSLPFCVSTLVYFTSPGYMNVLIND 158 + V+ L+ P ++ + Sbjct: 183 LTAFAVVAILLQAVVPAIDEIVGDH 207 >gi|294627650|ref|ZP_06706232.1| type II secretion system protein F [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598002|gb|EFF42157.1| type II secretion system protein F [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 400 Score = 35.9 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMP 77 + V +GLP+ + + + + ++ G SL+ ++ R + P Sbjct: 268 MARTLAIMVNSGLPLMEGLMIAARTVDNRALRLATDTMVTAIREGGSLAAALKRAAVFPP 327 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + G L+ L + L + + G + Sbjct: 328 ------TLLYMASSGENSGRLAPMLERAADYLEREFEAFTTAAMSLLGPAIIVLLGGVVA 381 Query: 138 FCVSTLVYFT 147 V +++ Sbjct: 382 VIVLSILLPI 391 >gi|149925602|ref|ZP_01913866.1| General secretion pathway protein F [Limnobacter sp. MED105] gi|149825719|gb|EDM84927.1| General secretion pathway protein F [Limnobacter sp. MED105] Length = 404 Score = 35.9 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 68/187 (36%), Gaps = 11/187 (5%) Query: 3 HLIKKRTAKFLDDFPN-----ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVI 56 + K+ +F + N + ++A L ++ A+A +V Q+ P+ E + Sbjct: 49 KMTGKKAGRFDRELSNREVVLLTRQLASLLQARLALAQALAALVEQAEKPLIRERINSIR 108 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 G LS+++++ + P + G+L L+ L+ L R+ ++ Sbjct: 109 SEVVSGTPLSQALAQYPKAFP-----EMYVATVAAGENTGDLGGVLSKLADALEARQALQ 163 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 KV A + + + + T V + ++ +A + +L Sbjct: 164 QKVSAAFIYPAIVTLVALMVVIGLLTYVVPQVVSVFESSNQELPTLTVVMIALSDLLRDW 223 Query: 177 MVMRLMI 183 + ++ Sbjct: 224 GWLMALV 230 Score = 34.3 bits (77), Expect = 8.8, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 40/126 (31%), Gaps = 7/126 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V +G+P+ A+A + V E G LS+++ + + P Sbjct: 277 LSILVGSGVPILKALAAANRTLGNSALQLAMVDVQERVKEGSGLSKAMGKSGLFPP---- 332 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 T + + G L+ L S R KA ME + + V Sbjct: 333 --VLTHLVASGEATGQLAAMLERASESQRTEVERKAMWLTSLMEPILILVMGLIVLLIVL 390 Query: 142 TLVYFT 147 ++ Sbjct: 391 AVMMPI 396 >gi|195402457|ref|XP_002059821.1| GJ15030 [Drosophila virilis] gi|194140687|gb|EDW57158.1| GJ15030 [Drosophila virilis] Length = 2200 Score = 35.9 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 5/106 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + A +VR++ AG+ + I S + F + + + ++ Sbjct: 1242 ENRMRTAAHQMVRNLAAGMAMITGKDEIARAISQNLHKAFMAALTGVQSMADMQAASMQL 1301 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 E ++ + E LS RK + + Sbjct: 1302 AN-----ENVELVCAFIQKTSAEKSALEIDRRLSTDFETRKIAREE 1342 >gi|124514590|gb|EAY56102.1| putative type IV pilus biosynthesis protein [Leptospirillum rubarum] Length = 362 Score = 35.9 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 L + + AG+PV A I QSS +R+ V+ L E++ R P Sbjct: 228 EFLTGLSAMLEAGIPVIRAFDQIRRQSSPYLRARIEPVMRIYKRTGKLGEAMDRAGTGFP 287 Query: 78 LQE 80 +E Sbjct: 288 SRE 290 >gi|88809346|ref|ZP_01124854.1| pili biogenesis protein [Synechococcus sp. WH 7805] gi|88786565|gb|EAR17724.1| pili biogenesis protein [Synechococcus sp. WH 7805] Length = 417 Score = 35.9 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 15/136 (11%), Positives = 44/136 (32%), Gaps = 7/136 (5%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRY 75 I RAG+P+ ++ + + + + G+ LS +++R Sbjct: 284 AQFCRIFSSLTRAGVPILMSLEISSETAGNSIISDAILESRALVQEGVLLSTALTR---- 339 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + + + G + + L+ ++ D + K +E + G Sbjct: 340 --QKVLPDMALSMLSIGEETGEMDQMLSKVADFYEDEVSASVKALTSMLEPAMIVVVGGI 397 Query: 136 LPFCVSTLVYFTSPGY 151 + + + + Sbjct: 398 VGSILLAMYLPMFTVF 413 >gi|297297125|ref|XP_002804967.1| PREDICTED: fibronectin type III and SPRY domain-containing protein 2 isoform 2 [Macaca mulatta] gi|297297127|ref|XP_002804968.1| PREDICTED: fibronectin type III and SPRY domain-containing protein 2 isoform 3 [Macaca mulatta] Length = 682 Score = 35.9 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 12/105 (11%), Positives = 37/105 (35%), Gaps = 11/105 (10%) Query: 31 LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISV 90 +P+++A+ + + +++I+ ++ L E + QE + Sbjct: 181 IPLNEALESAKDEIHKNMYKLEKQIIQMENFANHLEEVFITVEENFGKQEQN-------- 232 Query: 91 QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + +E L L++ ++ + + +EA + Sbjct: 233 ---FESHYNEILETLAQKYEEKIQALGEKKKEKLEALYGQLVSCG 274 >gi|134046757|ref|YP_001098242.1| flagellar assembly protein J [Methanococcus maripaludis C5] gi|132664382|gb|ABO36028.1| type II secretion system protein [Methanococcus maripaludis C5] Length = 558 Score = 35.9 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 50/146 (34%), Gaps = 2/146 (1%) Query: 15 DFPNALDIIVRSVRA-GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 +FP+ L + SV A G ++D++ + P+ + + + + ++ ++ Sbjct: 331 NFPDFLRSLGDSVSAKGGGMTDSLEYLSSNDFGPLTKDLEGLYKRVSIRVNSQKAWRYFG 390 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + FS + + LGGN A + + R N++ + + + Sbjct: 391 YDTCSYMIQLFSEMFERCTFLGGNAGLAAHMIGKNFRKIINLRRSKYQSVSQFSGIMYGL 450 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDP 159 ++ +N L Sbjct: 451 SGGM-ALTLYASAGVANMVNGLYTTL 475 >gi|109082192|ref|XP_001082154.1| PREDICTED: fibronectin type III and SPRY domain-containing protein 2 isoform 1 [Macaca mulatta] Length = 727 Score = 35.9 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 12/105 (11%), Positives = 37/105 (35%), Gaps = 11/105 (10%) Query: 31 LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISV 90 +P+++A+ + + +++I+ ++ L E + QE + Sbjct: 181 IPLNEALESAKDEIHKNMYKLEKQIIQMENFANHLEEVFITVEENFGKQEQN-------- 232 Query: 91 QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + +E L L++ ++ + + +EA + Sbjct: 233 ---FESHYNEILETLAQKYEEKIQALGEKKKEKLEALYGQLVSCG 274 >gi|152976636|ref|YP_001376153.1| type II secretion system protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025388|gb|ABS23158.1| type II secretion system protein [Bacillus cytotoxicus NVH 391-98] Length = 344 Score = 35.9 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 44/128 (34%), Gaps = 7/128 (5%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + ++ GL V +A+ ++ Q + E R+ E G L I + Sbjct: 217 QLSGLLQGGLSVLEALTLMSKQRHHPFFQYEAARIEERLMAGEPLDSIIMKSG------Y 270 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + Q GNL+ L + S ++ ++ K + ++ I + F Sbjct: 271 YEADLSYVIAHGQKNGNLAAELGDYSELMIEKMEGKMNRIFVVIQPLLFVCIGIIVVFMY 330 Query: 141 STLVYFTS 148 ++ Sbjct: 331 LAMIMPMF 338 Score = 34.3 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 19/154 (12%), Positives = 55/154 (35%), Gaps = 8/154 (5%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 ++ + + L + + G + A+ + Q S R + + + E G SL Sbjct: 4 RKKWRLDEQV-MLLKRLGDLLEKGYSLLQALEFLQFQLSSQKRLQLQHMTEELKNGQSLH 62 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ +++ + + F++ Q G++S AL S +L+ + + ++ + Sbjct: 63 DAFHQLMFHPDILSYLFYA-------QKHGDISFALRQGSLLLQRKNKHQKEMIKVLRYP 115 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 + + + ++ + L Sbjct: 116 IFLSVFLIGILAVFHFILLPQFEILYSSLRTSTT 149 >gi|221202533|ref|ZP_03575563.1| type IV fimbrial assembly protein PilC [Burkholderia multivorans CGD2M] gi|221177628|gb|EEE10045.1| type IV fimbrial assembly protein PilC [Burkholderia multivorans CGD2M] Length = 313 Score = 35.9 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 41/130 (31%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + AG+P++DA A + + ++ G L++++ + Sbjct: 183 WCRSLATLLGAGVPLADAFATLERTAGHPVFERASTQIAARVLRGARLADAMQASGCFPD 242 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ G L LA+++ + + + + A E + + Sbjct: 243 DIVQP------IAVAEETGALDTMLADIATLSEHQLDARIDTLAALGEPLIVIVLGALVG 296 Query: 138 FCVSTLVYFT 147 V + Sbjct: 297 GLVIAMYLPI 306 >gi|172056918|ref|YP_001813378.1| type II secretion system protein [Exiguobacterium sibiricum 255-15] gi|171989439|gb|ACB60361.1| type II secretion system protein [Exiguobacterium sibiricum 255-15] Length = 312 Score = 35.9 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 54/162 (33%), Gaps = 16/162 (9%) Query: 30 GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS 89 G+ +A+ +++ + R + E G LS ++ + + + Sbjct: 4 GISTKEALDILIRFEDPLLIPVIREIQERLQQGNRLSFALEPL-------NLPTALQQLL 56 Query: 90 VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF--- 146 L + R+L MK K ++ A + L + V+ Sbjct: 57 RVGDQTERPLMILRQVIRLLELESQMKKKFWKMARYPIVLAVSLLLLFMFYALYVFPSLL 116 Query: 147 ------TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 T P ++ LI+ +++ M+ I+++R + Sbjct: 117 EMSNPATLPPFVRPLIHPSAKYVMAFAPLTTMVGLILLIRRI 158 Score = 34.3 bits (77), Expect = 7.7, Method: Composition-based stats. Identities = 17/145 (11%), Positives = 43/145 (29%), Gaps = 11/145 (7%) Query: 8 RTAKFLDDFPN-----ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 R + + AG + +A + + + ++ + Q G Sbjct: 165 RMKMIQKMLRLYYSYLFTIEVGSFIDAGFSLEEAFHALEQGQTGKKKQMYQMLHHRQKSG 224 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LSE++ + + + ++ G+L L + +L + + + + L Sbjct: 225 QPLSEAMQ------DENIIDVETVGLVHIARESGDLGPLLLEQAALLHESIEEEVEKKLL 278 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFT 147 +E + L Y Sbjct: 279 LIEPALYGGLTVMTGTLFLILYYPI 303 >gi|71899811|ref|ZP_00681961.1| type II secretion system protein [Xylella fastidiosa Ann-1] gi|71730402|gb|EAO32483.1| type II secretion system protein [Xylella fastidiosa Ann-1] Length = 297 Score = 35.9 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 16/136 (11%), Positives = 44/136 (32%), Gaps = 5/136 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + RAG+P+ +A+ ++ G + + + + +S+ SI+ Sbjct: 160 NSALARFSRTTAVTFRAGVPLVEALGIVAGATGN---KVYSDAVFRMRDDVSVGYSINMS 216 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 +R + + ++ + G L L ++ + + +E +I Sbjct: 217 MRQVGI--FPHMVVQMASIGEEAGALDAMLFKVAEYYEQEVSNAVDGLSSLLEPLIMVFI 274 Query: 133 IGSLPFCVSTLVYFTS 148 + V + Sbjct: 275 GVIVGGMVIAMYLPIF 290 >gi|187933799|ref|YP_001886614.1| pilus biogenesis protein [Clostridium botulinum B str. Eklund 17B] gi|187721952|gb|ACD23173.1| bacterial type II secretion system protein F [Clostridium botulinum B str. Eklund 17B] Length = 358 Score = 35.9 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 53/158 (33%), Gaps = 7/158 (4%) Query: 6 KKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGL 63 KKR K ++ + + + G+ +++A+ +I + + +++ G+ Sbjct: 12 KKRYKKINYNELSLISGSLAQLYKDGIKINEALNLIKEVVLTKEYKRSISDIVKNIENGM 71 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 +LS + P F I + G L EAL L R + + + Sbjct: 72 TLSNAFDEKRELYPK-----FFIGIISIGENSGKLYEALKTLKNYYGKRSFINKYIISSL 126 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 I +L ++ +V G + P Sbjct: 127 TYPMILMISILALMVFLTLVVIPNFRGIYLSIGIKPPF 164 >gi|218234987|ref|YP_002369047.1| comG operon protein 2 [Bacillus cereus B4264] gi|218162944|gb|ACK62936.1| comG operon protein 2 [Bacillus cereus B4264] Length = 343 Score = 35.9 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 60/174 (34%), Gaps = 20/174 (11%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L + + G + A+ + Q + + +R+IE G SL +S ++ + + Sbjct: 14 LLKRLGELLEKGYSLLQALEFLQFQLPVEKKVQLQRMIEELKDGKSLHDSFHQLKFHQDM 73 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 F++ + G++S AL S +L + + + + + + + F Sbjct: 74 LSYLFYA-------EQHGDISFALQQGSALLYKKDKYRRDMMKIMQYPMFLMFFLLIMLF 126 Query: 139 CVSTLVYFTSPGYMNVLINDPRGH-------------MLLGVAAAFMLIGIMVM 179 ++ + ++ ++L ++ GI+ M Sbjct: 127 IFKLILLPQVEIVYSSFGSNTPLLTEKILSAIKLLPYIILVAILTVIIGGILYM 180 >gi|217322870|ref|YP_002327090.1| pilin biogenesis protein (pilC) [Acinetobacter baumannii AB307-0294] gi|213986017|gb|ACJ56316.1| pilin biogenesis protein (pilC) [Acinetobacter baumannii AB307-0294] Length = 235 Score = 35.9 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 40/129 (31%), Gaps = 7/129 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG+P+ DA+ G +++ + ++ E G L ++ R Sbjct: 107 RTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVATGQQLQFAMRVSNR----- 161 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + + G L L ++ + + ME A + + Sbjct: 162 -FPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGL 220 Query: 140 VSTLVYFTS 148 V + Sbjct: 221 VIAMYLPIF 229 >gi|284166396|ref|YP_003404675.1| hypothetical protein Htur_3137 [Haloterrigena turkmenica DSM 5511] gi|284016051|gb|ADB62002.1| protein of unknown function DUF6 transmembrane [Haloterrigena turkmenica DSM 5511] Length = 331 Score = 35.9 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 18/49 (36%) Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + + + SP +L D G +L A +G +++R Sbjct: 128 AVGMGLGLLGVALVVSPDPAALLGGDAFGRAILFAGAICAALGAVLIRR 176 >gi|305432261|ref|ZP_07401424.1| general secretory pathway protein F [Campylobacter coli JV20] gi|304444609|gb|EFM37259.1| general secretory pathway protein F [Campylobacter coli JV20] Length = 391 Score = 35.9 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 52/170 (30%), Gaps = 9/170 (5%) Query: 1 MKHLIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 +K + K + D F + G+ + DA+ + ++ + Sbjct: 40 IKEIQKASFKRLDDARFILFFQELSLLCEVGISIKDALKEL---DKIYSHKMIAKLCDNL 96 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 +LG +LS + + E+ + SQ G LSE +SR+ ++ + +V Sbjct: 97 NLGQNLSLAFENANFGLTHAEL-----ALIKTSQNTGKLSEIFMQISRLRQNNVENEQRV 151 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 + + + + V L L + Sbjct: 152 KKALRYPLIVFLSVCAAFVLLMLFVVPNFKDLFEDLNLALPFITELIIYI 201 >gi|196231664|ref|ZP_03130521.1| type II secretion system protein [Chthoniobacter flavus Ellin428] gi|196224136|gb|EDY18649.1| type II secretion system protein [Chthoniobacter flavus Ellin428] Length = 326 Score = 35.9 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 45/154 (29%), Gaps = 11/154 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + + VR G+P A+ + + R ++ G ++ E+ + M + E Sbjct: 15 LAQLVRQGIPFPAALNKLAPGARGDTRRLIEAARKSLASGHTVGEAFTAMPSVVSSLE-- 72 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + + + G L L +LS + + L F + Sbjct: 73 ---SAVVSAVEKSGQLDRGLRDLSEYFAALDKARRDFVMRCAYP------VFMLHFGILL 123 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 L T G L V A +I Sbjct: 124 LNAPTLFTQSAAAYGRQVGTAFLFVYACVAVIAF 157 >gi|163785074|ref|ZP_02179791.1| fimbrial assembly protein PilC [Hydrogenivirga sp. 128-5-R1-1] gi|159879655|gb|EDP73442.1| fimbrial assembly protein PilC [Hydrogenivirga sp. 128-5-R1-1] Length = 171 Score = 35.9 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 9/100 (9%), Positives = 24/100 (24%), Gaps = 6/100 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + G+P+ A+ + + + + E S Sbjct: 36 AIAKFARTFATLIAGGVPIIRALEIASKTTGNIIIEEAIMKARDDVEQGKPLWSSL---- 91 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 + + + G + E L ++ D + Sbjct: 92 --DPKIFPPIFISMLKVGEETGRMDEMLDTIAEFFEDEVD 129 >gi|269302608|gb|ACZ32708.1| putative general secretion pathway protein F [Chlamydophila pneumoniae LPCoLN] Length = 391 Score = 35.9 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 26/197 (13%), Positives = 62/197 (31%), Gaps = 20/197 (10%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ- 59 ++ + +R + + ++ +R+GLP+ +++ + Q Sbjct: 42 IREVALRRMSIKSTELIVFTKQLLLLLRSGLPLYESLVSLRDQYHGQKMGLLLTSFMETL 101 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SLS++++ F + GNL L N+ +L +R + K+ Sbjct: 102 RSGGSLSQAMAAHPNIFDH-----FYCSGVAAGESVGNLEGCLQNIIVVLEERAQITKKM 156 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML--------------L 165 ++ V + ++ L Sbjct: 157 IGALSYPCVLLVFSFAVMLFFLLGVIPALKETFENMEVKGLTKIVFGVSDCLSAYRYLFL 216 Query: 166 GVAAAFMLIGIMVMRLM 182 G A+A + +GI++ + Sbjct: 217 GFASALITVGILMRHRI 233 >gi|239934067|ref|ZP_04691020.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672] gi|291442506|ref|ZP_06581896.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672] gi|291345401|gb|EFE72357.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672] Length = 294 Score = 35.9 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 10/105 (9%), Positives = 34/105 (32%), Gaps = 1/105 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ K+ +F LD++ A ++A+ + + Sbjct: 140 VRDQAKRAREEFAHALAAYLDLVALKRAADAGPTEALERAAAVGQGWPFLYLQSALRRAR 199 Query: 61 -LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN 104 + ++++ + L + + ++ + G + +AL Sbjct: 200 LEKIPPYQALTDLAEEYDLPVLDDVADIMRGSATDGAAVYKALRA 244 >gi|62185515|ref|YP_220300.1| general secretion pathway protein F [Chlamydophila abortus S26/3] gi|62148582|emb|CAH64354.1| general secretion pathway protein F [Chlamydophila abortus S26/3] Length = 391 Score = 35.9 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 58/185 (31%), Gaps = 12/185 (6%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + ++ +R+GLP+ + ++ + Q S V + G Sbjct: 48 RRVRLKNSELIIFSKQMLLLLRSGLPLYETLSSLRDQYQGQSMSGLLTVFMEKLRGGG-- 105 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 F + + GNL L N+ +L +R+ M K+ A Sbjct: 106 --SLSQAMATYPGIFDNFYRSAVLAGESVGNLEGCLQNIIIVLEEREQMTKKLTAALSYP 163 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA--------AAFMLIGIMV 178 ++ T V + + + ++ G++ +G+ + Sbjct: 164 IVLLVFSLAVILFFLTGVIPSLKETFENMEPNTLTSIVFGLSDFVCKYKYLILGFLGLGM 223 Query: 179 MRLMI 183 + ++ Sbjct: 224 VSIIA 228 >gi|89099208|ref|ZP_01172086.1| ComG operon protein 2 [Bacillus sp. NRRL B-14911] gi|89086054|gb|EAR65177.1| ComG operon protein 2 [Bacillus sp. NRRL B-14911] Length = 343 Score = 35.9 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 20/171 (11%), Positives = 52/171 (30%), Gaps = 9/171 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++ R + L ++ G P+S+A+ + D ++ + G Sbjct: 1 MRTRKWTLDEQ-AGFLKRTGELLQRGYPLSEAIESLAYHLPDYRKAAISNSLNDLKEGHP 59 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ + + ++ G L+EA + S I+ R + ++ + Sbjct: 60 FYRVLTNLK-------FNPTLIGYVYFAEQHGGLAEAFIDGSAIMEKRSKEISSLRKILY 112 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL-INDPRGHMLLGVAAAFMLI 174 L F V + + + ++ + +A I Sbjct: 113 YPLFLMSATSILFFIVQQTLLPRFTSLFSSMDLDTNFFTEAVMLAGTLFPI 163 >gi|307106352|gb|EFN54598.1| hypothetical protein CHLNCDRAFT_58125 [Chlorella variabilis] Length = 1063 Score = 35.5 bits (80), Expect = 3.1, Method: Composition-based stats. Identities = 6/89 (6%), Positives = 20/89 (22%), Gaps = 2/89 (2%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL--GLSLSESISRMVRY 75 + L ++ +GL + A+ + + + + + Sbjct: 201 DLLAQLILDYESGLSIEAAIQRVRTRMEAWRVQVLLDFYGMSRIGGQHRVLPADVEAAAK 260 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALAN 104 +T + + L Sbjct: 261 HDWPLPFLSATYVRTMLDVHMEERRQLKR 289 >gi|269138010|ref|YP_003294710.1| type II secretory pathway component PulF [Edwardsiella tarda EIB202] gi|267983670|gb|ACY83499.1| type II secretory pathway component PulF [Edwardsiella tarda EIB202] gi|304558057|gb|ADM40721.1| Type IV fimbrial assembly protein PilC [Edwardsiella tarda FL6-60] Length = 380 Score = 35.5 bits (80), Expect = 3.1, Method: Composition-based stats. Identities = 16/140 (11%), Positives = 45/140 (32%), Gaps = 6/140 (4%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + + + + AG+P+ A+ ++ R+ ++ GL+LS+++ Sbjct: 43 SDFIAQLADLLEAGVPLLSALDLMANGHPHAEWRALIHQLSHEVADGLTLSQALRGQSAI 102 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + + G L+E L+R + ++ ++ + Sbjct: 103 FPPLYGRALAAA-----EQSGALAEVCRQLARQQQQAHALRQRLLRALRYPLFLLSVALL 157 Query: 136 LPFCVSTLVYFTSPGYMNVL 155 + + + L Sbjct: 158 IALGMLLTLLPQFAQLYASL 177 >gi|156741387|ref|YP_001431516.1| hypothetical protein Rcas_1403 [Roseiflexus castenholzii DSM 13941] gi|156232715|gb|ABU57498.1| conserved hypothetical protein [Roseiflexus castenholzii DSM 13941] Length = 316 Score = 35.5 bits (80), Expect = 3.1, Method: Composition-based stats. Identities = 16/192 (8%), Positives = 60/192 (31%), Gaps = 11/192 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIET- 58 + ++ + P + + +RAG + A+ ++ P+++E+ +E Sbjct: 119 LWFEEQRYATRIDATLPATVGRLEAQLRAGSGLQPAIEKVIADMPASPLKAEWSWFLERL 178 Query: 59 -----QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDR 112 + + + + P + + F + + + L + + ++ Sbjct: 179 GQPLAAGALATATMVCAALRAQTPSRRHATFLSHLEIAIDQPHAALVQRVRAAYEAMQAS 238 Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH---MLLGVAA 169 + + + + + + + ++ ++ G +L + Sbjct: 239 DRRASMLATELAQMRNTGIALFLINVGITLYLFIVQHERFLTAYRSNIGVGVGAVLALVV 298 Query: 170 AFMLIGIMVMRL 181 LIG ++ Sbjct: 299 GAPLIGGYLLGR 310 >gi|325915068|ref|ZP_08177397.1| Type II secretion system protein F [Xanthomonas vesicatoria ATCC 35937] gi|325538766|gb|EGD10433.1| Type II secretion system protein F [Xanthomonas vesicatoria ATCC 35937] Length = 401 Score = 35.5 bits (80), Expect = 3.1, Method: Composition-based stats. Identities = 15/129 (11%), Positives = 37/129 (28%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + V +GLP+ + + + + + T + ++ E S Sbjct: 269 MARTLAIMVNSGLPLMEGLMIAARTVDNRALR-----LATDSMVTAIREGGSLAAAMKRA 323 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 ++ + GG L+ L + L +E + G + Sbjct: 324 GVFPPTLLYMASSGEKGGRLAPMLERAADYLEREFESFTTAAMSLLEPAIIVLLGGVVAV 383 Query: 139 CVSTLVYFT 147 V +++ Sbjct: 384 IVLSILLPI 392 >gi|311244924|ref|XP_003121626.1| PREDICTED: LOW QUALITY PROTEIN: spectrin beta chain, brain 4-like [Sus scrofa] Length = 3724 Score = 35.5 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 13/138 (9%), Positives = 42/138 (30%), Gaps = 10/138 (7%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPV------SDAVAVIVGQSSDPVRSEFRRVIETQH 60 +R + + + G + A+AV Q + E ++ Q Sbjct: 2019 RRQEGLERELVGTERQLRELLETGGTMQKLGPRPQALAVQQRQQALEQAWEALKLHVEQR 2078 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVIS---VQSQLGGNLSEALANLSRILRDRKNMKA 117 L ++ + + + + + + + +L LS + + ++A Sbjct: 2079 RTH-LEQAQLLAHFHTAVWDYTSWVASVWPELQDGESSQEPHNSLLKLSAHQQLQAELQA 2137 Query: 118 KVQALSMEAKASAWIIGS 135 + + + ++ + Sbjct: 2138 REELHQHATQLGQQVLLA 2155 >gi|15895249|ref|NP_348598.1| hypothetical protein CA_C1978 [Clostridium acetobutylicum ATCC 824] gi|15024959|gb|AAK79938.1|AE007702_5 Predicted membrane protein [Clostridium acetobutylicum ATCC 824] gi|325509395|gb|ADZ21031.1| membrane protein [Clostridium acetobutylicum EA 2018] Length = 279 Score = 35.5 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 52/146 (35%), Gaps = 2/146 (1%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSE 67 K D + D+I AG+ + A+ + S ++ R+ +L ++ + Sbjct: 128 KNKIRLDLADVYDLITIQTIAGVSIGHALLEVNTVCKSKRLKKSLIRLAAKINLSKNIEK 187 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + + E+ F VI G + EAL + S L+ + + ++ Sbjct: 188 ALDEFNQEYDMHEIDAFVAVIKESITSGVS-EEALDDQSSALKTINSFYTASETEKIDIH 246 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMN 153 + L + T+ Y M Sbjct: 247 VLIISMLLLGGIICTIYYCIGSDLMQ 272 >gi|325280179|ref|YP_004252721.1| Type II secretion system F domain [Odoribacter splanchnicus DSM 20712] gi|324311988|gb|ADY32541.1| Type II secretion system F domain [Odoribacter splanchnicus DSM 20712] Length = 350 Score = 35.5 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 13/130 (10%), Positives = 33/130 (25%), Gaps = 4/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 ++ +G+P+ A+ ++ + + VI L + Sbjct: 218 FCKLLRLLYGSGVPLLHALELLRDIITFYPYRQSFGVIGEVLRRGGLFAAGLA----RFP 273 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + +L E L L + K +E + G + Sbjct: 274 HIYDRKLCALLRVGEETNHLGEMLGRQGDRLTQELEYRLKQLGGFLEPVLILGVGGLVAL 333 Query: 139 CVSTLVYFTS 148 + + Sbjct: 334 VLIAMYLPMF 343 >gi|302387861|ref|YP_003823683.1| hypothetical protein Closa_3535 [Clostridium saccharolyticum WM1] gi|302198489|gb|ADL06060.1| conserved hypothetical protein [Clostridium saccharolyticum WM1] Length = 291 Score = 35.5 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 17/153 (11%), Positives = 46/153 (30%), Gaps = 2/153 (1%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 LI R + P + +V+ ++A V + + +++E Sbjct: 137 KLITARRQDIEYELPRFVSTLVQELKASRDVLSILEHYQKNAGKAMKNELAITTSDMR-T 195 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + +++R + +S + + + LS L+ + + K A+ Sbjct: 196 GNYEGALARFEARVSSAMLSDIVRGLIGVLRGDDGVV-FFQMLSHDLKQLELQRLKRLAM 254 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 K + L + + + + Sbjct: 255 ERPPKIRKFSFLLLGCMLLLYMGVMGYQILGAM 287 >gi|289650992|ref|ZP_06482335.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. aesculi str. 2250] Length = 228 Score = 35.5 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 16/128 (12%), Positives = 38/128 (29%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + + AG+P+ +A+ + G + + V Q + +S + Sbjct: 100 RTLSTTFAAGVPLVEALDSVAGATGNVVFK-----NAVQKVKQDVSTGMQLNFSMRSTGV 154 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + ++ + G L L ++ D + ME A + + V Sbjct: 155 FPTLAIQMTAIGEESGALDTMLDKVATYYEDEVDNMVDNLTSLMEPMIMAVLGVIVGGLV 214 Query: 141 STLVYFTS 148 + Sbjct: 215 IAMYLPIF 222 >gi|258514754|ref|YP_003190976.1| hypothetical protein Dtox_1489 [Desulfotomaculum acetoxidans DSM 771] gi|257778459|gb|ACV62353.1| hypothetical protein Dtox_1489 [Desulfotomaculum acetoxidans DSM 771] Length = 289 Score = 35.5 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 17/154 (11%), Positives = 49/154 (31%), Gaps = 2/154 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +K++ + + P + I ++++A V + + E + Sbjct: 136 RLKEKREQIEGELPRFVSTIEQTLKASRDVLAMMENYKKNAGPAFAGELDVLTADMRS-S 194 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S +++R + +S + + + L+ + + + K QA Sbjct: 195 SYEAALTRFEARLNSPMLSDVVRGLIGVLRGDDSAV-YFQMLAHDFKALELQRLKGQAQK 253 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + K + L + T + + ++ L Sbjct: 254 IPPKIRIFSFIMLMCFLLTYMAIIAMQILSSLGT 287 >gi|290559354|gb|EFD92688.1| hypothetical protein BJBARM5_0600 [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 705 Score = 35.5 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 16/161 (9%), Positives = 49/161 (30%), Gaps = 7/161 (4%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 F A+ + + G P + + S+F + L +S Sbjct: 437 NSIESSFGAAMSQMSSFLSQGYPPEATLVKVEENMKGTPVSDFFEITVNNIRKLGMSLKD 496 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN-------LSRILRDRKNMKAKVQAL 122 + +++ + ++++ N +S+ L + + ++ +V++L Sbjct: 497 AFFNATNGSTRFFPSPMILASTKIFLSSAAKSVRNASVATLYVSKHLANLRRIEQQVRSL 556 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 E + + L + + ++ G + Sbjct: 557 LEEVTSGMRVEVGLISPAMAGIVIGLTTLIGTVLTSLSGSI 597 >gi|190571855|ref|YP_001967632.1| putative membrane protein [Bifidobacterium breve] gi|160213024|gb|ABX10956.1| putative membrane protein [Bifidobacterium breve] Length = 197 Score = 35.5 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 7/68 (10%) Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + +AK +A + S + +L + ++ F L D G + L VA Sbjct: 10 ETAKAQAKQEAKKNQPDVSGTVGLTLVWLAVIVLPFM-------LHADIIGWLALAVAVI 62 Query: 171 FMLIGIMV 178 ++ GI Sbjct: 63 LLVAGIFW 70 >gi|258540644|ref|YP_003175143.1| ABC transporter permease [Lactobacillus rhamnosus Lc 705] gi|257152320|emb|CAR91292.1| ABC transporter, permease protein [Lactobacillus rhamnosus Lc 705] Length = 352 Score = 35.5 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 3/75 (4%) Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 +A + AL + A ++ + L F P M +P + + A M Sbjct: 271 RTRAIIAALFWQILMLAVTGVAIGAGLLGLTQFILPKAM-PFYANPPLFIAIAAALILMS 329 Query: 174 I--GIMVMRLMINFD 186 + G+ +R +++ D Sbjct: 330 LVGGLFSLRRILHID 344 >gi|123443691|ref|YP_001007662.1| type IV pilus integral membrane protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090652|emb|CAL13523.1| type IV pilus integral membrane protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 369 Score = 35.5 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 61/187 (32%), Gaps = 20/187 (10%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHLGLSLSES 68 ++ F +AL + + G P+ A+ +I + +++ LS + + Sbjct: 30 RYRLQFYDALRFL---LENGNPLGVALQMIAEVHTDFGKHWHPYGDLVDDCLESLSDNGA 86 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + + G L EAL +++ R+ + V +S+ Sbjct: 87 GRTFENVLAAWGPLEEA-ALISAGMRSGKLPEALLQAGKLVEARRRILMLVSKMSLYPLL 145 Query: 129 SAWIIGSLPFCVSTLVYFTSP------------GYMNVL--INDPRGHMLLGVAAAFMLI 174 + G + + T G+M+ L D +G +G A + + Sbjct: 146 LFCLGGGMLVINGAYLIPTLRKLSDPQDWSGALGFMHALANFTDRQGTAAVGAVAILIGL 205 Query: 175 GIMVMRL 181 + + Sbjct: 206 VLWSIPR 212 >gi|113955237|ref|YP_729258.1| type IV pilus assembly protein PilC [Synechococcus sp. CC9311] gi|113882588|gb|ABI47546.1| type IV pilus assembly protein PilC [Synechococcus sp. CC9311] Length = 426 Score = 35.5 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 15/136 (11%), Positives = 43/136 (31%), Gaps = 7/136 (5%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRY 75 I RAG+P+ ++ + + + + G+ LS +++R Sbjct: 293 AQFCRIFSSLTRAGVPILMSMEISSETAGNSIISDAILDSRTLVQEGVLLSTALTR---- 348 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + + + G + L+ ++ D + K +E + G Sbjct: 349 --QKVLPDMALSMLSIGEETGEMDRMLSKVADFYEDEVSTSVKALTSMLEPAMIVVVGGI 406 Query: 136 LPFCVSTLVYFTSPGY 151 + + + + Sbjct: 407 VGSILLAMYLPMFTVF 422 >gi|91785276|ref|YP_560482.1| type II secretion system, subunit F / Type IV pilus assembly protein TapC/PilC [Burkholderia xenovorans LB400] gi|91689230|gb|ABE32430.1| type II secretion system, subunit F / Type IV pilus assembly protein TapC/PilC [Burkholderia xenovorans LB400] Length = 409 Score = 35.5 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 21/158 (13%), Positives = 46/158 (29%), Gaps = 2/158 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D + +RAGLP++ A+ ++ + + R V Sbjct: 68 ADITLFTRQLASLLRAGLPLAPALDLLAQAQASRRQGMPRIVGALARDITG--GLRFSAA 125 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + + G L+ LA ++ +AKV+A A + Sbjct: 126 LQRHPAQFNALYCQLVEVGEAAGALAAVLARIAEDRERAAAQRAKVRAALTYPVAILVLA 185 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 ++ + V T + +A + Sbjct: 186 LAITAALLVWVVPTFQQIFDGFGARLPAPTQFVLALSS 223 >gi|269986816|gb|EEZ93094.1| hypothetical protein BJBARM4_0292 [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 705 Score = 35.5 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 16/160 (10%), Positives = 49/160 (30%), Gaps = 7/160 (4%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 F A+ + + G P + + +EF V L +S + Sbjct: 438 AIESSFGAAMSQMSSFLSQGYPPEATLVKVEENMKGTPVAEFFDVTINNIRKLGMSLKDA 497 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN-------LSRILRDRKNMKAKVQALS 123 +++ + ++++ N +S+ L + + ++ +V+++ Sbjct: 498 FFNPTNGSTRFFPSPLILASTKIFLSSAAKSVRNASVATSYVSKHLANLRKIEEQVRSML 557 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 E + + L + + ++ G + Sbjct: 558 EEVTSGMRVEVGLISPAMAGIVVGLTTLIGTVLTSLSGSI 597 >gi|197285900|ref|YP_002151772.1| protein transport protein [Proteus mirabilis HI4320] gi|194683387|emb|CAR44111.1| protein transport protein [Proteus mirabilis HI4320] Length = 399 Score = 35.5 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 40/134 (29%), Gaps = 5/134 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 I+ + +AGLP+ + +I Q S ++R + ++ +S+S + Sbjct: 263 HQLHIIFQIMTITQQAGLPLLQGLKIITEQL---THSLYQRALTDMIAHITQGKSLSSFM 319 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + ++ G L L+ + + +E I Sbjct: 320 R--HNPLFPPICYQLISSAENSGQLQFFCQQLTHWFYHQLEERLDSVKTWLEPILMTLIA 377 Query: 134 GSLPFCVSTLVYFT 147 + + Sbjct: 378 LITGTLIIAMYLPV 391 >gi|253998558|ref|YP_003050621.1| type II secretion system protein [Methylovorus sp. SIP3-4] gi|253985237|gb|ACT50094.1| type II secretion system protein [Methylovorus sp. SIP3-4] Length = 395 Score = 35.5 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 11/98 (11%), Positives = 29/98 (29%), Gaps = 6/98 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + +R G+P+ A+ ++ +R+ V G LS ++ Sbjct: 261 QLARFYRTLGMLLRGGIPLVTAMQMVSSLLQPALRNSLALVERDIREGKPLSSAMEEHGM 320 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112 + + + G + E + + + Sbjct: 321 TT------SIAIRMLRVGERTGRMGEMMERIGVFYDEE 352 >gi|313200632|ref|YP_004039290.1| type II secretion system protein [Methylovorus sp. MP688] gi|312439948|gb|ADQ84054.1| type II secretion system protein [Methylovorus sp. MP688] Length = 395 Score = 35.5 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 11/98 (11%), Positives = 29/98 (29%), Gaps = 6/98 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + +R G+P+ A+ ++ +R+ V G LS ++ Sbjct: 261 QLARFYRTLGMLLRGGIPLVTAMQMVSSLLQPALRNSLALVERDIREGKPLSSAMEEHGM 320 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112 + + + G + E + + + Sbjct: 321 TT------SIAIRMLRVGERTGRMGEMMERIGVFYDEE 352 >gi|310827090|ref|YP_003959447.1| hypothetical protein ELI_1498 [Eubacterium limosum KIST612] gi|308738824|gb|ADO36484.1| hypothetical protein ELI_1498 [Eubacterium limosum KIST612] Length = 1426 Score = 35.5 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 14/154 (9%), Positives = 45/154 (29%), Gaps = 27/154 (17%) Query: 4 LIKKRTAKFLDDFPNALDII------VRSVR----------------AGLPVSDAVAVIV 41 +K + + F + + +R + +G+P+ + + Sbjct: 493 RAQKEKERIEEYFQTVVRNLPGGVAVIRCLEDGRMMPEYISDGFAELSGMPLDEVWRICE 552 Query: 42 GQS-----SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG 96 + + R+ E + E R+ + + + S Sbjct: 553 KDAMAGVHPEDRARVNERMAEYIRNDENYCEMAYRLRKGDGSSLWVKNTLSLIQGSGGEK 612 Query: 97 NLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + +++R ++++M+ K L ++ Sbjct: 613 RIYAGYHDITREREEQEHMRKKYNDLILQHYRRP 646 >gi|153930642|ref|YP_001393316.1| type II secretion system protein F [Yersinia pseudotuberculosis IP 31758] gi|152958183|gb|ABS45645.1| bacterial type II secretion system protein F domain [Yersinia pseudotuberculosis IP 31758] Length = 359 Score = 35.5 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 19/137 (13%), Positives = 44/137 (32%), Gaps = 6/137 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L I + AG+ + +A+ +I SS + + G+ L +++ + Sbjct: 228 FLLNISVMMSAGIQMQEALRIISNGSSPWLMQRVNSAL----FGIGLGKNLGEALEISGY 283 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + GNL E L + + + + ++ + I+ L Sbjct: 284 DFPDRKAIPFISILADTGNLDEVLPDYAN--EWLEESVRNIDTIANWMLSIGLILIGLVI 341 Query: 139 CVSTLVYFTSPGYMNVL 155 + + YM + Sbjct: 342 ALIMIGTNEISNYMQTM 358 >gi|218290609|ref|ZP_03494711.1| hypothetical protein AaLAA1DRAFT_2297 [Alicyclobacillus acidocaldarius LAA1] gi|218239393|gb|EED06590.1| hypothetical protein AaLAA1DRAFT_2297 [Alicyclobacillus acidocaldarius LAA1] Length = 294 Score = 35.5 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 16/166 (9%), Positives = 44/166 (26%), Gaps = 2/166 (1%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL- 61 I+ R V +R +P+ +A+ I ++ RR + Sbjct: 129 RRIQTRRRDAAWQVRQLKRRFVSLLRRRIPLEEALWQIARDAAAQRTDFGRRFVARMQEV 188 Query: 62 -GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +L +++ + + E++ F I + + + Sbjct: 189 RVRALGDALHDLAEEFRVPELTRFVQAIRHAEANSLGSLADILETQIRDESAQLDELVEA 248 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 + + + + + + I +G + L Sbjct: 249 EKNAMQLKLRMMSVVMFVYILGWAGYFAFAVFRHQIQTGQGILGLF 294 >gi|319645034|ref|ZP_07999267.1| ComGB protein [Bacillus sp. BT1B_CT2] gi|317392843|gb|EFV73637.1| ComGB protein [Bacillus sp. BT1B_CT2] Length = 340 Score = 35.5 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 14/163 (8%), Positives = 50/163 (30%), Gaps = 20/163 (12%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + L + +++G + DA++++ ++ + L+ ++ ++ Sbjct: 6 REQADLLKKLGDMMQSGYTILDALSML-------------KLQLNERRRADLTFAMEKLT 52 Query: 74 RYMP------LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 P + + I ++ GNL A +L + K++ + Sbjct: 53 EGCPVFQVLEMISFHKDAVTIVYFAEQHGNLPFAFRQSGELLHRKIAQSEKLKKAARYPL 112 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVL-INDPRGHMLLGVAA 169 + + + + + + + L+ Sbjct: 113 FLVLTVCVIISIMKSAIVPQFSAIYESMNVETSFATTLIFYVF 155 >gi|146305723|ref|YP_001186188.1| type II secretion system protein [Pseudomonas mendocina ymp] gi|145573924|gb|ABP83456.1| type II secretion system protein [Pseudomonas mendocina ymp] Length = 333 Score = 35.5 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 43/151 (28%), Gaps = 11/151 (7%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAV-AVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 D N D + + AG+PV DA+ Q + +R +F + G SL+ + Sbjct: 193 RADLSNFCDSLGLLLEAGMPVLDALPRACAAQGNARLRRDFANLAPRVAAGQSLARAFDA 252 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + G EAL +R+ + A Sbjct: 253 LA-----FPGKPMLMAVLNTGEATGRPGEALLRFARLQAQQLAA-----RQQALATWLPR 302 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162 + T G+ L G Sbjct: 303 LFYLAVAGWMAYGLLTGGGFFPALPAGLAGR 333 >gi|307109775|gb|EFN58012.1| hypothetical protein CHLNCDRAFT_57086 [Chlorella variabilis] Length = 2107 Score = 35.5 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 6/89 (6%), Positives = 20/89 (22%), Gaps = 2/89 (2%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL--GLSLSESISRMVRY 75 + L ++ +GL + A+ + + + + + Sbjct: 201 DLLAQLILDYESGLSIEAAIQRVRTRMEAWRVQVLLDFYGMSRIGGQHRVLPADVEAAAE 260 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALAN 104 +T + + L Sbjct: 261 HDWPLPFLSATYVRTMLDVHMEERRQLKR 289 >gi|224283519|ref|ZP_03646841.1| Flp pilus assembly protein [Bifidobacterium bifidum NCIMB 41171] Length = 182 Score = 35.5 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 17/139 (12%), Positives = 45/139 (32%), Gaps = 1/139 (0%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P + ++ S+R+G+ V+ ++ + + V + H G S ++ + Sbjct: 44 LPLLIGLLSVSLRSGMSVTRSLEGVGEAVGGALGGGLCAVADALHRGSSWKDAWNAADFG 103 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIG 134 + + V+ G + L S + + + + A + Sbjct: 104 DYAETSAILRGVLEPSWTRGVSPIGPLTTASEQWMEGERTAIEQESASLSVKLLLPTGLC 163 Query: 135 SLPFCVSTLVYFTSPGYMN 153 LP V + + ++ Sbjct: 164 MLPAFVFLGILPSVMAFVG 182 >gi|258509445|ref|YP_003172196.1| ABC transporter permease [Lactobacillus rhamnosus GG] gi|257149372|emb|CAR88345.1| ABC transporter, permease protein [Lactobacillus rhamnosus GG] gi|259650725|dbj|BAI42887.1| antimicrobial peptide ABC transporter permease component [Lactobacillus rhamnosus GG] Length = 352 Score = 35.5 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 3/75 (4%) Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 +A + AL + A ++ + L F P M +P + + A M Sbjct: 271 RTRAIIAALFWQILMLAVTGVAIGAGLLGLTQFILPKAM-PFYANPPLFIAIAAALILMS 329 Query: 174 I--GIMVMRLMINFD 186 + G+ +R +++ D Sbjct: 330 LVGGLFSLRRILHID 344 >gi|268591741|ref|ZP_06125962.1| putative protein transport protein HofC [Providencia rettgeri DSM 1131] gi|291312702|gb|EFE53155.1| putative protein transport protein HofC [Providencia rettgeri DSM 1131] Length = 395 Score = 35.1 bits (79), Expect = 4.1, Method: Composition-based stats. Identities = 13/156 (8%), Positives = 42/156 (26%), Gaps = 9/156 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + +G+ + + ++ I G S+ + + Sbjct: 61 FFHQLSLLSSSGINLVQCLKILHTNCQLPFWIDIIENSIVHIEKGEKFSQYLKKHP---- 116 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + I ++ G ++ + ++ IL + + + Sbjct: 117 -TIFNDTIISIITIAEKTGQYEQSFSTINSILDHNNKVSLLISKSIRYPI---ILSSFSI 172 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + ++ + P + N+ N L+ F+ Sbjct: 173 MLLIIMMVYVVPQFENIYQNTKHELPLVTKIITFIS 208 >gi|47095929|ref|ZP_00233532.1| comG operon protein 2 [Listeria monocytogenes str. 1/2a F6854] gi|224499926|ref|ZP_03668275.1| hypothetical protein LmonF1_09694 [Listeria monocytogenes Finland 1988] gi|254827607|ref|ZP_05232294.1| comG operon protein 2 [Listeria monocytogenes FSL N3-165] gi|254829897|ref|ZP_05234552.1| hypothetical protein Lmon1_01010 [Listeria monocytogenes 10403S] gi|254898489|ref|ZP_05258413.1| hypothetical protein LmonJ_01700 [Listeria monocytogenes J0161] gi|254912020|ref|ZP_05262032.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254936347|ref|ZP_05268044.1| comG operon protein 2 [Listeria monocytogenes F6900] gi|47015675|gb|EAL06605.1| comG operon protein 2 [Listeria monocytogenes str. 1/2a F6854] gi|258599984|gb|EEW13309.1| comG operon protein 2 [Listeria monocytogenes FSL N3-165] gi|258608937|gb|EEW21545.1| comG operon protein 2 [Listeria monocytogenes F6900] gi|293589985|gb|EFF98319.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 343 Score = 35.1 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 15/128 (11%), Positives = 42/128 (32%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + +++GL ++ + + + S E R + +L + +S + Sbjct: 215 RELGYLLKSGLSITHIMHLFAQEESPAFFQEIAR-----QILPTLEQGLSLTKALEKMPI 269 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 I++ + GNL+E + + K + ++ I + Sbjct: 270 FEKELYYIAIHGEKNGNLAEEFLFYYNLCHQKSLQKTEKLFSFIQPIVFIVIGILIVSIY 329 Query: 141 STLVYFTS 148 +++Y Sbjct: 330 LSILYPMF 337 >gi|256810974|ref|YP_003128343.1| Type II secretion system F domain protein [Methanocaldococcus fervens AG86] gi|256794174|gb|ACV24843.1| Type II secretion system F domain protein [Methanocaldococcus fervens AG86] Length = 344 Score = 35.1 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 57/178 (32%), Gaps = 5/178 (2%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGL-SLS 66 + L +V +RAG + + + I + + E R +I ++ +L Sbjct: 167 KEEVKLQVLFTLLYMVSILRAGASLPEILETISKSNEYGFISFEARSIIRDVNVSGYTLV 226 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME- 125 E++ R + + + + GNLS L L + K ++ Sbjct: 227 EALERAKLRTEIPLLKKLYDQMII-GYNKGNLSMLLEKLYEDIVRDSLSKLDSSKFMIQN 285 Query: 126 -AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + LPF L S ++N + ++ GI V + Sbjct: 286 LGNLTFGVGLILPFAGMILSTMISNQGFPGILNTLDLLLTKIGPLLTLIFGIFVKLKI 343 >gi|327399287|ref|YP_004340156.1| Type II secretion system F domain-containing protein [Hippea maritima DSM 10411] gi|327181916|gb|AEA34097.1| Type II secretion system F domain protein [Hippea maritima DSM 10411] Length = 405 Score = 35.1 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 13/132 (9%), Positives = 42/132 (31%), Gaps = 5/132 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 + I+ ++GL ++ ++ ++ + + V + I + + + + Sbjct: 271 LSRIMRILGLLYKSGLAITTSLDIVAEATGNDVAKQAILAIRSYVESGATISRPIKSSEF 330 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + + + G L E L +S + + + ++E +I Sbjct: 331 FP-----DIVSDMVAVGEETGRLDEMLFKVSDYFDEEISYAINNLSTAIEPILLVFIAAM 385 Query: 136 LPFCVSTLVYFT 147 + + Sbjct: 386 VLLLALGVFLPM 397 >gi|160940639|ref|ZP_02087982.1| hypothetical protein CLOBOL_05533 [Clostridium bolteae ATCC BAA-613] gi|158436374|gb|EDP14141.1| hypothetical protein CLOBOL_05533 [Clostridium bolteae ATCC BAA-613] Length = 292 Score = 35.1 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 19/151 (12%), Positives = 45/151 (29%), Gaps = 2/151 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +KKR + P I +S+ V + + + E I + Sbjct: 140 VKKRKVLIEQELPRLAVSIQQSLANDRDVLKLLVSYRRIAGPELGKELDTTIADMK-TGN 198 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ R + +S + + G + L+ +R + K +A Sbjct: 199 YENALLRFQNRIGSTMLSDIVRGLI-GTLRGDDQQMYFRMLAFDMRQMEQSNLKKEAAKR 257 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + L + V + ++ L Sbjct: 258 PKQMQKYSMMMLFCILLIYVVVLTVEVISSL 288 >gi|157283961|ref|YP_001468229.1| type II secretion system protein [Kineococcus radiotolerans SRS30216] gi|151363103|gb|ABS06105.1| type II secretion system protein [Kineococcus radiotolerans SRS30216] Length = 305 Score = 35.1 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 53/152 (34%), Gaps = 1/152 (0%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL- 63 + R A F + +D++ +G S+A+A + R + + Sbjct: 154 AESRRADFRAAITSYMDLVAMRAASGAGASEALADAARIGRGWPFARVRLALADARISGY 213 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + + ++ R+ + + E+ S + + G L +R LRD + A+ +A Sbjct: 214 TPARALGRLGEEIGMHELQDLSAQLLLADATGAQAEVTLRERARSLRDAQLAVAQGKAGE 273 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + ++Y +M L Sbjct: 274 RSQTMVIAQLLLALGFMLFVLYPPVSNFMTAL 305 >gi|242215781|ref|XP_002473703.1| predicted protein [Postia placenta Mad-698-R] gi|220727188|gb|EED81115.1| predicted protein [Postia placenta Mad-698-R] Length = 412 Score = 35.1 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 24/204 (11%), Positives = 60/204 (29%), Gaps = 27/204 (13%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGL--PVSDAVAV--------------IVGQSS 45 + ++++ + ++V ++ AGL V A V ++ Q S Sbjct: 143 RDMVRRWKDEIDSQL-----LMVGTLTAGLFSTVITAFNVEYYRTLKPSADISDVIQQLS 197 Query: 46 DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG--GNLSEALA 103 + + + E S+ ++ + + S ++ S Sbjct: 198 EQMSNFTSNSTEASTAAQSIQKAPTLSATCINAFWFSSLVLTLATGSIGILVKQWLNNYT 257 Query: 104 NLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-- 161 + L ++ + ++ + II LP + + G + +L Sbjct: 258 DHIPALPNKSVLTWHERSTGLAKWRVGRIIAILPVLLQIAIALFLVGLVQLLWTLSAAVF 317 Query: 162 --HMLLGVAAAFMLIGIMVMRLMI 183 L A I V+ ++ Sbjct: 318 GIVFALVAALLLFSISSAVIPSIM 341 >gi|330501687|ref|YP_004378556.1| type II secretion system protein [Pseudomonas mendocina NK-01] gi|328915973|gb|AEB56804.1| type II secretion system protein [Pseudomonas mendocina NK-01] Length = 333 Score = 35.1 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 42/152 (27%), Gaps = 13/152 (8%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D N D + + AG+PV DA+ S+ R+ + + Sbjct: 193 RADIRNFCDSLGLLLEAGMPVLDALPRASSAVSN------ARLRRDFANLAPRVAAGQSL 246 Query: 73 VRYMPLQEVS--FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 VR + + G EAL +R+ + ++ A + Sbjct: 247 VRAFDGLSFPGKAMLIGVLNTGEASGRPGEALLRFARLQAQQLATNQQML-----ASWAP 301 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162 + T G+ L + G Sbjct: 302 RLFYLAVAIWMAYGLLTGGGFFPALPAELAGR 333 >gi|237756012|ref|ZP_04584595.1| single-stranded-DNA-specific exonuclease RecJ [Sulfurihydrogenibium yellowstonense SS-5] gi|237691828|gb|EEP60853.1| single-stranded-DNA-specific exonuclease RecJ [Sulfurihydrogenibium yellowstonense SS-5] Length = 574 Score = 35.1 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 2/56 (3%) Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 P +S + +P + + + +P L V AF LI ++R ++N D+ Sbjct: 176 WQNYTPPFLSEKINIINPKFYSDKLINPLFKHLATVGIAFYLIA--IIRRLLNIDI 229 >gi|284801731|ref|YP_003413596.1| hypothetical protein LM5578_1485 [Listeria monocytogenes 08-5578] gi|284994873|ref|YP_003416641.1| hypothetical protein LM5923_1438 [Listeria monocytogenes 08-5923] gi|284057293|gb|ADB68234.1| hypothetical protein LM5578_1485 [Listeria monocytogenes 08-5578] gi|284060340|gb|ADB71279.1| hypothetical protein LM5923_1438 [Listeria monocytogenes 08-5923] Length = 343 Score = 35.1 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 15/128 (11%), Positives = 42/128 (32%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + +++GL ++ + + + S E R + +L + +S + Sbjct: 215 RELGYLLKSGLSITHIMHLFAQEESPAFFQEIAR-----QILPTLEQGLSLTKALEKMPI 269 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 I++ + GNL+E + + K + ++ I + Sbjct: 270 FEKELYYIAIHGEKNGNLAEEFLFYYNLCHQKSLQKTEKLFSFIQPIVFIVIGILIVSIY 329 Query: 141 STLVYFTS 148 +++Y Sbjct: 330 LSILYPMF 337 >gi|16803386|ref|NP_464871.1| hypothetical protein lmo1346 [Listeria monocytogenes EGD-e] gi|224501711|ref|ZP_03670018.1| hypothetical protein LmonFR_04212 [Listeria monocytogenes FSL R2-561] gi|16410762|emb|CAC99424.1| comGB [Listeria monocytogenes EGD-e] Length = 343 Score = 35.1 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 15/128 (11%), Positives = 42/128 (32%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + +++GL ++ + + + S E R + +L + +S + Sbjct: 215 RELGYLLKSGLSITHIMHLFAQEESPAFFQEIAR-----QILPTLEQGLSLTKALEKMPI 269 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 I++ + GNL+E + + K + ++ I + Sbjct: 270 FEKELYYIAIHGEKNGNLAEEFLFYYNLCHQKSLQKTEKLFSFIQPIVFIVIGILIVSIY 329 Query: 141 STLVYFTS 148 +++Y Sbjct: 330 LSILYPMF 337 >gi|188582052|ref|YP_001925497.1| glycosyl transferase group 1 [Methylobacterium populi BJ001] gi|179345550|gb|ACB80962.1| glycosyl transferase group 1 [Methylobacterium populi BJ001] Length = 412 Score = 35.1 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 11/103 (10%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 + +R + LD + R AG+P A++ I E R + Sbjct: 214 RVDRRKGVL-----DFLDALERLWEAGVPFDAAISGIGPDV------EAARARADEIGFT 262 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLS 106 S + Y + ++ + V + G + L ++ Sbjct: 263 SAQVRFTGYADYDTVPDLYREADVFVSPTYAEGFSNTILEAMA 305 >gi|330969402|gb|EGH69468.1| type II secretion system protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 220 Score = 35.1 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 6/56 (10%), Positives = 23/56 (41%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI 56 + + ++R + + + + ++ +G+ V A+ V+ + D + + Sbjct: 134 LATVARRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIR 189 >gi|52081008|ref|YP_079799.1| DNA transport protein ComGB [Bacillus licheniformis ATCC 14580] gi|52786385|ref|YP_092214.1| ComGB [Bacillus licheniformis ATCC 14580] gi|52004219|gb|AAU24161.1| probably part of the DNA transport machinery ComGB [Bacillus licheniformis ATCC 14580] gi|52348887|gb|AAU41521.1| ComGB [Bacillus licheniformis ATCC 14580] Length = 344 Score = 35.1 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 14/163 (8%), Positives = 50/163 (30%), Gaps = 20/163 (12%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + L + +++G + DA++++ ++ + L+ ++ ++ Sbjct: 10 REQADLLKKLGDMMQSGYTILDALSML-------------KLQLNERRRADLTFAMEKLT 56 Query: 74 RYMP------LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 P + + I ++ GNL A +L + K++ + Sbjct: 57 EGCPVFQVLEMISFHKDAVTIVYFAEQHGNLPFAFRQSGELLHRKIAQSEKLKKAARYPL 116 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVL-INDPRGHMLLGVAA 169 + + + + + + + L+ Sbjct: 117 FLVLTVCVIISIMKSAIVPQFSAIYESMNVETSFATTLIFYVF 159 >gi|81051975|gb|ABB55329.1| hypothetical protein 12.t00047 [Asparagus officinalis] Length = 304 Score = 35.1 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 14/142 (9%), Positives = 40/142 (28%), Gaps = 22/142 (15%) Query: 1 MKHLIKKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 + ++R + F ALD + + + Q Sbjct: 127 LSKRARQRQRQHLARQFAKALDQM---------------------DGLHYQADLELRKRQ 165 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 LS + R + V T +++ + + + +++ R+ ++ +V Sbjct: 166 VANLSPRPASESSSRSPINEWVRVQRTRSTLEERTQKRRALSAQARAQVQEARRRLQKEV 225 Query: 120 QALSMEAKASAWIIGSLPFCVS 141 ++ +L + Sbjct: 226 AKKPPPTHQNSPFQSNLSILII 247 >gi|301066049|ref|YP_003788072.1| type II secretory pathway/competence component [Lactobacillus casei str. Zhang] gi|300438456|gb|ADK18222.1| Type II secretory pathway/competence component [Lactobacillus casei str. Zhang] Length = 317 Score = 35.1 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 52/161 (32%), Gaps = 12/161 (7%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG + D A + S R + R+ G+ L E++ Sbjct: 11 FCRQSAALIAAGFSLPDVFAYL-RVSLPKYRPIWERIETDLASGIGLPEAVDHQALAP-- 67 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 +Q+ G+L++ALA L R + ++ L + ++ +L Sbjct: 68 -----ILFQQLQLAQVHGDLAKALAVAGDYLGLRVRNRQRIGQLLIYPLVLLGMLVTLQV 122 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V V + L++ L+ + ++ + Sbjct: 123 VVVFGVLPALALPQSHLVHT----QLMTMGGGLAAGLLIWL 159 >gi|87119647|ref|ZP_01075544.1| hypothetical protein MED121_06900 [Marinomonas sp. MED121] gi|86165123|gb|EAQ66391.1| hypothetical protein MED121_06900 [Marinomonas sp. MED121] Length = 312 Score = 35.1 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 2/97 (2%) Query: 16 FPNALDIIVRS--VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 +A D + S RAG+P A+++I F + L+ I Sbjct: 164 LCDAFDAMTSSRPYRAGMPQEKALSIIANNKGTQFDCVFADALIALGEEGKLAHIIGHSD 223 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 +PLQ I VQS+ + Sbjct: 224 EGIPLQSCPTCGPTIVVQSEHKAGDHLHCPKCAGSFE 260 >gi|229819119|ref|YP_002880645.1| type II secretion system protein [Beutenbergia cavernae DSM 12333] gi|229565032|gb|ACQ78883.1| type II secretion system protein [Beutenbergia cavernae DSM 12333] Length = 179 Score = 35.1 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 43/141 (30%), Gaps = 6/141 (4%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 D A +++ + AG V A+ + R LG S SE+ Sbjct: 34 RRAVRVDAAVACELVAAVLDAGAAVPTALDALGRAIDGDDGRALRSCGGALLLGASWSEA 93 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 S + + E + G AL + +R R+ AK A + + Sbjct: 94 WSGVPGRWAIVER-----ALEPAWTDGVAPGPALRAAADGVRARRAELAKEAAARLGVRL 148 Query: 129 SAWI-IGSLPFCVSTLVYFTS 148 + + LP V + Sbjct: 149 VLPLGLCYLPAFVLLGLLPVV 169 >gi|229552743|ref|ZP_04441468.1| ABC superfamily ATP binding cassette transporter, membrane protein [Lactobacillus rhamnosus LMS2-1] gi|229313848|gb|EEN79821.1| ABC superfamily ATP binding cassette transporter, membrane protein [Lactobacillus rhamnosus LMS2-1] Length = 357 Score = 35.1 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 3/75 (4%) Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 +A + AL + A ++ + L F P M +P + + A M Sbjct: 276 RTRAIIAALFWQILMLAVTGVAIGAGLLGLTQFILPKAM-PFYANPPLFIAIAAALILMS 334 Query: 174 I--GIMVMRLMINFD 186 + G+ +R +++ D Sbjct: 335 LVGGLFSLRRILHID 349 >gi|210621720|ref|ZP_03292769.1| hypothetical protein CLOHIR_00714 [Clostridium hiranonis DSM 13275] gi|210154602|gb|EEA85608.1| hypothetical protein CLOHIR_00714 [Clostridium hiranonis DSM 13275] Length = 374 Score = 35.1 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 8/136 (5%), Positives = 38/136 (27%), Gaps = 5/136 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + +++G+P+ +A+ + + + + + + P Sbjct: 244 FSRNMYIMLKSGIPLVEAIDIASDITGNVYIQRKLEISIRYINKGNSISKSIELSSIFP- 302 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + GN+ + ++ + ++ +E + + + Sbjct: 303 ----DMFVSMIKNGEESGNIERSFQYINDFFENELDIMTDRIVRLVEPIITIIMGIVIGA 358 Query: 139 CVSTLVYFTSPGYMNV 154 + +V + Sbjct: 359 LIIAIVMPMFDAITAI 374 >gi|74317312|ref|YP_315052.1| type II secretion system protein F [Thiobacillus denitrificans ATCC 25259] gi|74056807|gb|AAZ97247.1| type II secretion system protein F [Thiobacillus denitrificans ATCC 25259] Length = 389 Score = 35.1 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 13/134 (9%), Positives = 33/134 (24%), Gaps = 6/134 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + + G+ + A+ + G +R R G +S ++ Sbjct: 255 QLARFYRTLGMLLAGGVSIVPALDMASGILHASLRDGLARAGARIREGQPISFAMEANGL 314 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + G + E + ++ + E A I Sbjct: 315 TTQ------VALRMLRVGERTGQMGEMMERIAAFYDEEMARWVDWFTKLFEPLLMAVIGV 368 Query: 135 SLPFCVSTLVYFTS 148 + V + Sbjct: 369 VIGALVVLMYMPIF 382 >gi|301055733|ref|YP_003793944.1| ComG operon protein 2 [Bacillus anthracis CI] gi|300377902|gb|ADK06806.1| comG operon protein 2 [Bacillus cereus biovar anthracis str. CI] Length = 345 Score = 35.1 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 7/132 (5%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + GL V +A+ +++ Q + E R+ G L I++ Sbjct: 214 YFATQLSGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIAGEPLQSIIAKSG--- 270 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + I Q GNL+ L + S ++ ++ K K + ++ I G + Sbjct: 271 ---YYEEELSYIITHGQANGNLAIELGDYSDLIMEKMERKIKRMLVIIQPILFTCIGGIV 327 Query: 137 PFCVSTLVYFTS 148 ++ Sbjct: 328 VLMYLAMIMPMF 339 >gi|302063752|ref|ZP_07255293.1| general secretion pathway protein F [Pseudomonas syringae pv. tomato K40] Length = 123 Score = 35.1 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 1/59 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISR 71 + + + AG P+ ++ +++ Q R+ R+ E G LS ++ Sbjct: 62 AALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGKPLSVALEE 120 >gi|199598870|ref|ZP_03212281.1| ABC-type antimicrobial peptide transport system, permease component [Lactobacillus rhamnosus HN001] gi|199590282|gb|EDY98377.1| ABC-type antimicrobial peptide transport system, permease component [Lactobacillus rhamnosus HN001] Length = 352 Score = 35.1 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 3/75 (4%) Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 +A + AL + A ++ + L F P M +P + + A M Sbjct: 271 RTRAIIAALFWQILMLAVTGVAIGAGLLGLTQFILPKAM-PFYANPPLFIAIAAALISMS 329 Query: 174 I--GIMVMRLMINFD 186 + G+ +R +++ D Sbjct: 330 LVGGLFSLRRILHID 344 >gi|70608026|ref|YP_256896.1| hypothetical protein Saci_2318 [Sulfolobus acidocaldarius DSM 639] gi|68568674|gb|AAY81603.1| conserved Archaeal membrane protein [Sulfolobus acidocaldarius DSM 639] Length = 611 Score = 35.1 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 57/177 (32%), Gaps = 5/177 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65 + + F + L+ I + AGL V + R R+V LG L Sbjct: 380 REKSGFEEYAVKFLNAISEGLLAGLTFESIVTRLKDAQEMGKFREVLRKVDGYLKLGYPL 439 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD----RKNMKAKVQA 121 + ++ R + +S ++G + + L+ + R+ + KV+ Sbjct: 440 TIALKRGADSINEFTSRIALYTLSDMIEIGSMTPDNVRALADQINSQLVVRREYQGKVKP 499 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 L A + F +++ + + V G + + I ++ Sbjct: 500 LIATPYAGVLVSLIATFLLASGILSMLNSGIAVYGPIATGLVSIPQIIFITAISGIL 556 >gi|68535787|ref|YP_250492.1| hypothetical protein jk0712 [Corynebacterium jeikeium K411] gi|260578125|ref|ZP_05846046.1| membrane protein [Corynebacterium jeikeium ATCC 43734] gi|68263386|emb|CAI36874.1| hypothetical protein jk0712 [Corynebacterium jeikeium K411] gi|258603764|gb|EEW17020.1| membrane protein [Corynebacterium jeikeium ATCC 43734] Length = 242 Score = 35.1 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 6/67 (8%), Positives = 23/67 (34%) Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + + + +++ ++ G N I + +++ V + G+ Sbjct: 133 EKRFVRDWIDSRRYMMNFFLPLALLVIVIMIFGMSNPSIANLASLVMMIVFLIMIAEGLW 192 Query: 178 VMRLMIN 184 + R + Sbjct: 193 LGRRINR 199 >gi|325969263|ref|YP_004245455.1| type II secretion system F domain-containing protein [Vulcanisaeta moutnovskia 768-28] gi|323708466|gb|ADY01953.1| type II secretion system F domain-containing protein [Vulcanisaeta moutnovskia 768-28] Length = 514 Score = 34.7 bits (78), Expect = 5.3, Method: Composition-based stats. Identities = 16/159 (10%), Positives = 47/159 (29%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 + P + ++ G ++ A + + E+ + S++ ++ Sbjct: 85 VEWELPFFVVLLDIIHDIGGNITHAFEISNKVGLKWIGREWSLIKVFSLTTNSVTNAMQL 144 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 R+ P E F G+++ + ++ + K + + A Sbjct: 145 RARFHPSIEFQRFINGYVSVWGYSGDVNTYVRSVENTYLSILSNKLSALSKQIIDVVIAI 204 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + + + ++ +L P +LL Sbjct: 205 VSSLIVLILFVIIATILGMNYAILYIMPAMALLLPALIV 243 >gi|117925819|ref|YP_866436.1| Mg2+ transporter protein, CorA family protein [Magnetococcus sp. MC-1] gi|117609575|gb|ABK45030.1| Mg2+ transporter protein, CorA family protein [Magnetococcus sp. MC-1] Length = 326 Score = 34.7 bits (78), Expect = 5.3, Method: Composition-based stats. Identities = 19/143 (13%), Positives = 42/143 (29%), Gaps = 3/143 (2%) Query: 42 GQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEA 101 + + R+VI + +++ + + P + I Sbjct: 180 ESLREELLMLRRKVINLRRYLAPQKIALALLSKSPPSWLNKGRTRQIREVEHELQRYLGD 239 Query: 102 LANL---SRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158 L + + ++R+ N + V+ S LP T + + G M N Sbjct: 240 LESYRERAVVIREEINNQMNVRMNRAMYMLSLITGIFLPLGFLTGLLGINVGGMPGADNP 299 Query: 159 PRGHMLLGVAAAFMLIGIMVMRL 181 ++ + A I + V Sbjct: 300 WAFWLVCLLMIAVTAINLFVFYR 322 >gi|228987491|ref|ZP_04147610.1| ComG operon protein 2 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772223|gb|EEM20670.1| ComG operon protein 2 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 315 Score = 34.7 bits (78), Expect = 5.4, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 45/132 (34%), Gaps = 7/132 (5%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + GL V +A+ +++ Q + E RR+ G L I++ Sbjct: 184 YFATQLSGLLHGGLSVLEALTIMMEQKYHPFFQYEARRIEHQLIAGEPLQSIIAKSG--- 240 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + + Q GNL+ L + S ++ ++ K + ++ I G + Sbjct: 241 ---YYEEELSYVITHGQANGNLAIELGDYSDLIMEKMEQKINRMLVIIQPILFTCIGGIV 297 Query: 137 PFCVSTLVYFTS 148 ++ Sbjct: 298 VLMYLAMIMPMF 309 >gi|296160524|ref|ZP_06843340.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] gi|295889273|gb|EFG69075.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] Length = 409 Score = 34.7 bits (78), Expect = 5.4, Method: Composition-based stats. Identities = 20/152 (13%), Positives = 45/152 (29%), Gaps = 2/152 (1%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + +RAGLP++ A+ ++ + + R V Sbjct: 73 FTRQLASLLRAGLPLAPALDLLAQAQASRRQGMPRIVGALARDITG--GLRFSAALQRHP 130 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + + G L+ LA ++ +AKV+A A + ++ Sbjct: 131 AQFNALYCQLVEVGEAAGALAAVLARIAEDRERAAAQRAKVRAALTYPVAILVLALAITA 190 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + V T + +A + Sbjct: 191 ALLVWVVPTFQQIFDGFGARLPAPTQFVLALS 222 >gi|330718415|ref|ZP_08313015.1| Type II secretory pathway/competence component [Leuconostoc fallax KCTC 3537] Length = 244 Score = 34.7 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 13/155 (8%), Positives = 51/155 (32%), Gaps = 9/155 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + +++G ++ ++ ++ + ++L + + + Sbjct: 19 FFQELGELLKSGYSINQSLDILALAHQNWQTRLQE---------MNLKLVNGQTLPDVLA 69 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + V + + G+L + L + L + + K++ + I+G++ Sbjct: 70 KVVKSNILLQLRLAHQHGDLIDTLIVMGDNLEQFQVQQNKIRQILRYPAILLLILGAMAA 129 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + +Y + + H+ + + M+ Sbjct: 130 GLRLFLYPLLAQWQTTPTSHVDNHIRVSIYIILMV 164 >gi|300361338|ref|ZP_07057515.1| competence protein [Lactobacillus gasseri JV-V03] gi|300353957|gb|EFJ69828.1| competence protein [Lactobacillus gasseri JV-V03] Length = 326 Score = 34.7 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 22/165 (13%), Positives = 60/165 (36%), Gaps = 14/165 (8%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 +D + +++ G ++ ++ ++ S + + ++ + Sbjct: 14 FIDYLKQALINGYSLNASLKLLPKIWSGNSSQLVYISKQVEEG--------RQLGDVLHE 65 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 S + + + GNL L LS+++R + K++ ++ +L Sbjct: 66 VGFSSTLSAQINMAIIDGNLLSCLDQLSKLIRLKNKQLKKLRGELAYPALLIGMMVTLLI 125 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 C+ T + ND +++LG ++IG ++ +I Sbjct: 126 CMQTFLKTEMSD------NDWTSNLMLGGLVLLVIIGAFLISKII 164 >gi|199597324|ref|ZP_03210755.1| Type II secretory pathway/competence component [Lactobacillus rhamnosus HN001] gi|199591840|gb|EDY99915.1| Type II secretory pathway/competence component [Lactobacillus rhamnosus HN001] Length = 317 Score = 34.7 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 21/159 (13%), Positives = 54/159 (33%), Gaps = 8/159 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 ++AG +SD A + ++ + G++ S++++R Sbjct: 11 FCRQSAALMKAGFNLSDVFAYLQVSLPKHTA-IWKGIENELANGMAFSDAVAR------- 62 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 Q+++ +Q+ G+L++AL + L R + ++ L + ++ L Sbjct: 63 QDLAPILFQQLQLAQVHGDLAKALTIAADYLHLRVRNRQRIVQLLVYPCLLLAMLVVLQI 122 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 V V + L+ + + + Sbjct: 123 VVVFGVLPALSLPQSNLVALQLIGLGVVTVIGLLGYCYW 161 >gi|150399724|ref|YP_001323491.1| flagellar assembly protein J [Methanococcus vannielii SB] gi|150012427|gb|ABR54879.1| type II secretion system protein [Methanococcus vannielii SB] Length = 558 Score = 34.7 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 55/150 (36%), Gaps = 6/150 (4%) Query: 13 LDDFPNALDIIVRSVRA-GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 +FP+ L + SV A G +++++ + P+ + + + + + ++ Sbjct: 329 ELNFPDFLRSLGDSVCAKGGGMTESLQYLSSNDFGPLTKDLEGLYKRVSIRIDSQKAWRY 388 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + FS + + LGGN EA + + R N++ A Sbjct: 389 FGYDTCSYLIQLFSEMFERCTYLGGNAGEASNIIGKNFRKIINLRRSKYQN---VNQFAG 445 Query: 132 IIGSLPFCVSTLVYFTS--PGYMNVLINDP 159 I+ L ++ +Y +S +N L Sbjct: 446 IMYGLAGGMALTLYASSGVASMVNGLYTSL 475 >gi|71899812|ref|ZP_00681962.1| fimbrial assembly protein [Xylella fastidiosa Ann-1] gi|71730403|gb|EAO32484.1| fimbrial assembly protein [Xylella fastidiosa Ann-1] Length = 176 Score = 34.7 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 6/37 (16%), Positives = 15/37 (40%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS 50 D + ++AG+P+ A+ ++ +P Sbjct: 123 KDIAFFSRQMATMMKAGVPIVGALDILANGQKNPRMR 159 >gi|307107739|gb|EFN55981.1| hypothetical protein CHLNCDRAFT_145340 [Chlorella variabilis] Length = 1469 Score = 34.7 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 6/89 (6%), Positives = 20/89 (22%), Gaps = 2/89 (2%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL--GLSLSESISRMVRY 75 + L ++ +GL + A+ + + + + + Sbjct: 429 DLLAQLILDYESGLSIEAAIQRVRTRMEAWRVQVLLDFYGMSRIGGQHRVLPADVEAAAK 488 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALAN 104 +T + + L Sbjct: 489 HDWPLPFLSATYVRTMLDVHMEERRQLKR 517 >gi|268319773|ref|YP_003293429.1| competence protein ComGB [Lactobacillus johnsonii FI9785] gi|262398148|emb|CAX67162.1| competence protein ComGB [Lactobacillus johnsonii FI9785] Length = 333 Score = 34.7 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 64/185 (34%), Gaps = 15/185 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + +KK D +D + +++ G ++ ++ ++ +R Sbjct: 4 LSNFLKKDKLNSADQL-IFIDYLRQALINGYSLNASLRLL--------PKIWRGNSRQLL 54 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 E S++ + S + + GNL L +S+++R + K++ Sbjct: 55 YVNQRVEEGSQLGDVLQEVGFSSTLAAQINLAIIDGNLLSCLDQMSKLIRLKNKQLKKLK 114 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ +L C+ T + ND +++LG +++ + + Sbjct: 115 GELAYPALLVGMMVTLLICMQTFLKTEMSD------NDWTSNVMLGGLVLLVIVAVFFIS 168 Query: 181 LMINF 185 I Sbjct: 169 KTIRL 173 >gi|227535498|ref|ZP_03965547.1| type II secretory pathway/competence component [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227186820|gb|EEI66887.1| type II secretory pathway/competence component [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 274 Score = 34.7 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 53/161 (32%), Gaps = 12/161 (7%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG + D A + S R + R+ G+ L + Sbjct: 9 FCRQSAALIAAGFSLPDVFAYL-RVSLPKYRPIWERIETDLASGIGL-------PEAVGH 60 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 Q ++ +Q+ G+L++ALA L R + ++ L + ++ +L Sbjct: 61 QALAPILFQQLQLAQVHGDLAKALAVAGDYLGLRVRNRQRIGQLLIYPLVLLGMLVTLQV 120 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V V + L++ L+ + ++ + Sbjct: 121 VVVFGVLPALALPQSHLVHT----QLMTMGGGLAAGLLIWL 157 >gi|330952551|gb|EGH52811.1| type II secretion system protein [Pseudomonas syringae Cit 7] Length = 363 Score = 34.7 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 41/139 (29%), Gaps = 5/139 (3%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 L I +RA + +A+ + ++ +R +G + E++ Sbjct: 228 STFLLNIAVMLRANIDPLEALDTLKRGANPWLRERLEAAHYGVRMGKNFGEALDLSGHRF 287 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 P E F V+S + ++K + + S +IG L Sbjct: 288 PDHEAIQFLIVLSTTHSFSAAVHRYSLR-----WLEISLKQVERYAKSLSLVSMVLIGLL 342 Query: 137 PFCVSTLVYFTSPGYMNVL 155 V Y + + Sbjct: 343 MILVMVGAYSMTGNATQGM 361 >gi|284008394|emb|CBA74813.1| protein transport protein [Arsenophonus nasoniae] Length = 338 Score = 34.7 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 12/152 (7%), Positives = 47/152 (30%), Gaps = 4/152 (2%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + +++ + + ++ +I + S ++ ++ ++ E+ S ++ P Sbjct: 3 FMYQLSVLLKSNISLIQSLNIIQKECH---MSVWKCILAEIIKRINQGEAFSATLKCYPK 59 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + +L + + + L+ ++ +K K+ I + Sbjct: 60 L-FPEIIYRLIEIGEHTNSLEKNCQLIYQQLQQQQILKQKITKALQYPCIILIIASIVVS 118 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + V L + + Sbjct: 119 LMLFFVLPEFKAIYQTFNAQLPIATRLLIIIS 150 >gi|42518831|ref|NP_964761.1| hypothetical protein LJ0906 [Lactobacillus johnsonii NCC 533] gi|41583117|gb|AAS08727.1| hypothetical protein LJ_0906 [Lactobacillus johnsonii NCC 533] Length = 333 Score = 34.7 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 63/185 (34%), Gaps = 15/185 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + +KK D +D + +++ G ++ ++ ++ +R Sbjct: 4 LSNFLKKDKLNSADQL-IFIDYLRQALINGYSLNASLRLL--------PKIWRGNSRQLL 54 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 E S++ + S + + GNL L +S+++R + K++ Sbjct: 55 YVNQRVEEGSQLGDVLQEVGFSSTLAAQINLAVIDGNLLSCLDQMSKLIRLKNKQLKKLK 114 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ +L C+ T + ND +++LG ++ + + Sbjct: 115 GELAYPALLVGMMVTLLICMQTFLKTEMSD------NDLTSNVMLGGLILLVITAVFFIS 168 Query: 181 LMINF 185 I Sbjct: 169 KTIRL 173 >gi|238796140|ref|ZP_04639651.1| hypothetical protein ymoll0001_4790 [Yersinia mollaretii ATCC 43969] gi|238720085|gb|EEQ11890.1| hypothetical protein ymoll0001_4790 [Yersinia mollaretii ATCC 43969] Length = 364 Score = 34.7 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 48/159 (30%), Gaps = 7/159 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D + V A LP+ +A+ + QS R + Q L Sbjct: 26 DLVLLTRQLSTLVAAALPLEEALLALAQQSE----KPRHRALLQQVRNKILEGQPLAEAL 81 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + S + + G+L + L L+ + +K+K+ + + G Sbjct: 82 ACFPKTFSSLFRTMIAAGEASGHLDQVLLRLADNAEQSQKLKSKMLQALIYPL---VLTG 138 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 V+ L+ P + I+ + L + Sbjct: 139 VAITVVAILLTAVVPKVVEQFIHMQQALPLSTRLLISLS 177 >gi|15668961|ref|NP_247765.1| hypothetical protein MJ_0780 [Methanocaldococcus jannaschii DSM 2661] gi|2833585|sp|Q58190|Y780_METJA RecName: Full=Uncharacterized protein MJ0780 gi|1499600|gb|AAB98779.1| hypothetical protein MJ_0780 [Methanocaldococcus jannaschii DSM 2661] Length = 335 Score = 34.7 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 59/178 (33%), Gaps = 5/178 (2%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGL-SLS 66 + L ++ +RAG + + + I + V E + +I ++G +L Sbjct: 158 KGEIKLQILFTLIYMISILRAGASLPEVLESISKSREYGVVAFEAKSIIRDVNIGGYNLV 217 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME- 125 E++ R + + + V GNL L L + +K ++ Sbjct: 218 EALERAKMRTRIPILKKLYDQMIV-GYNKGNLPLLLGKLYEDIVRESMVKLDSSKFMIQN 276 Query: 126 -AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + LPF L + +++ +L ++ GI V + Sbjct: 277 LGNLAFGVGLILPFTGMILSTMIGNQGFSGILSTINLLLLKIGPLLTLIFGIFVKLKI 334 >gi|296504739|ref|YP_003666439.1| ComG operon protein 2 [Bacillus thuringiensis BMB171] gi|296325791|gb|ADH08719.1| ComG operon protein 2 [Bacillus thuringiensis BMB171] Length = 343 Score = 34.7 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 60/174 (34%), Gaps = 20/174 (11%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L + + G + A+ + Q + + +R+IE G SL +S ++ + + Sbjct: 14 LLKRLGELLEKGYSLLQALEFLQFQLPVEKKVQLQRMIEGLKDGKSLHDSFHQLKFHQDM 73 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 F++ + G++S AL S +L + + + + + + + F Sbjct: 74 LSYLFYA-------EQHGDISFALQQGSGLLYKKDKYRRDMMKIMHYPMFLMFFLLIMLF 126 Query: 139 CVSTLVYFTSPGYMNVLINDPRGH-------------MLLGVAAAFMLIGIMVM 179 ++ + ++ ++L ++ GI+ M Sbjct: 127 IFKLILLPQVEMVYSSFGSNTPLLTEKILSAIKLLPYIILTAILTVIIGGILYM 180 >gi|305664034|ref|YP_003860322.1| Type II secretion system F domain [Ignisphaera aggregans DSM 17230] gi|304378603|gb|ADM28442.1| Type II secretion system F domain [Ignisphaera aggregans DSM 17230] Length = 536 Score = 34.7 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 9/164 (5%), Positives = 43/164 (26%), Gaps = 3/164 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 + F + + + + ++ I+ + +R+ G+ + Sbjct: 299 KVKNIESFFTVFIRSLGLAFTTLRNYAQSLRSILRTDFGELTKPLQRLYSRLRNGVDRNI 358 Query: 68 SISRMVRYMPLQEVSFFSTVI---SVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ + + V + + E L+ + + + + + ++ Sbjct: 359 AMYFFIGETGSETVRRGMDIFYDAVESGGDPTKVGEILSTTIQRIINLRKQREQIARAFQ 418 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168 I+ + + + + P + + Sbjct: 419 GVIYILHILTVALAEIVFTLVILFQQLIQAMGTMPIQIIPMTYI 462 >gi|295695363|ref|YP_003588601.1| Type II secretion system F domain protein [Bacillus tusciae DSM 2912] gi|295410965|gb|ADG05457.1| Type II secretion system F domain protein [Bacillus tusciae DSM 2912] Length = 327 Score = 34.7 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 44/126 (34%), Gaps = 7/126 (5%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 ++ + AG+ + + +A + V R V + G SLSE++ R + +E+ Sbjct: 200 LLGTMLAAGVSLEETLAHLG-SLRTRVSGAARYVRQRMSEGESLSEALGRWPQCT--EEL 256 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + Q+ L ++ R+ + ++ +E + I + Sbjct: 257 RRVVELALWTGQMDTALLVLAERIAT----RQRRRTELWIRWLEPALTGVIGVLILGIFL 312 Query: 142 TLVYFT 147 L Sbjct: 313 LLYLPI 318 >gi|191637965|ref|YP_001987131.1| Type II secretory pathway/competence component [Lactobacillus casei BL23] gi|190712267|emb|CAQ66273.1| Type II secretory pathway/competence component [Lactobacillus casei BL23] Length = 315 Score = 34.7 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 53/161 (32%), Gaps = 12/161 (7%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG + D A + S R + R+ G+ L + Sbjct: 9 FCRQSAALIAAGFSLPDVFAYL-RVSLPKYRPIWERIETDLASGIGL-------PEAVGH 60 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 Q ++ +Q+ G+L++ALA L R + ++ L + ++ +L Sbjct: 61 QALAPILFQQLQLAQVHGDLAKALAVAGDYLGLRVRNRQRIGQLLIYPLVLLGMLVTLQV 120 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V V + L++ L+ + ++ + Sbjct: 121 VVVFGVLPALALPQSHLVHT----QLMTMGGGLAAGLLIWL 157 >gi|195475066|ref|XP_002089806.1| GE22247 [Drosophila yakuba] gi|194175907|gb|EDW89518.1| GE22247 [Drosophila yakuba] Length = 2172 Score = 34.7 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 14/106 (13%), Positives = 29/106 (27%), Gaps = 5/106 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + A +VR++ AG+ + I S + + S + + Sbjct: 1211 ENRMRTAAHQMVRNLAAGMAMITGKDEIARAISQNLHKALLSAL-----NGMPSMAEIQA 1265 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 E ++ +E LS RK + + Sbjct: 1266 AAMQLASENVELVCAFIQKTSAEKAAAEIDRRLSTDFETRKIAREE 1311 >gi|157692971|ref|YP_001487433.1| competence protein GB [Bacillus pumilus SAFR-032] gi|157681729|gb|ABV62873.1| competence protein GB [Bacillus pumilus SAFR-032] Length = 346 Score = 34.7 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 17/139 (12%), Positives = 48/139 (34%), Gaps = 7/139 (5%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 L + + ++AG + +A+ ++ Q S+ + + I+ G + ++ Sbjct: 15 AECLSKLSQLIQAGYTLIEALTMVNIQLSNKQQQQLTPGIQWLLEGEPFYIVLEKL---- 70 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + I S+ G+L+ AL +R L + + + + + + Sbjct: 71 ---QFQREVIAILSFSEKHGSLATALEQSARFLEKKIKQTDTFKRMLRYPIFLIFTVSIV 127 Query: 137 PFCVSTLVYFTSPGYMNVL 155 V ++ + + Sbjct: 128 LILVQQMIIPQFSLLYSSM 146 >gi|154706584|ref|YP_001425262.1| type 4 pili biogenesis protein (plasma membrane protein) [Coxiella burnetii Dugway 5J108-111] gi|154355870|gb|ABS77332.1| type 4 pili biogenesis protein (plasma membrane protein) [Coxiella burnetii Dugway 5J108-111] Length = 351 Score = 34.7 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 16/131 (12%), Positives = 46/131 (35%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + ++ AG+P++ A+ + +R ++ G+S S +I R + Sbjct: 221 WIKVLATLSAAGIPLNKALITANHIIRNHALRQALDKLPCWISEGVSFSTAIERCGFFSH 280 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L+E L ++ I ++ + + + +E + + Sbjct: 281 Q------AIQLIHIGENSGTLNEMLNKVAVIYQEEIDERYDRLSECLEPAIMIVLALLIG 334 Query: 138 FCVSTLVYFTS 148 + + Sbjct: 335 GLIIAMYLPVF 345 >gi|299823012|ref|ZP_07054898.1| general secretion pathway protein F [Listeria grayi DSM 20601] gi|299816541|gb|EFI83779.1| general secretion pathway protein F [Listeria grayi DSM 20601] Length = 343 Score = 34.7 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 18/173 (10%), Positives = 43/173 (24%), Gaps = 13/173 (7%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + L I + + GLP+ A++ + + E + + Sbjct: 14 DFLIRIAKLLEQGLPLETAISFLSITLPKERARFQYIIAEL--------RAGKEFAVSLK 65 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 F S G L + + + K++ + ++ Sbjct: 66 NASFPDFICAQIFYSNRHGYFITTLRETGEHMLRKADELKKLRKTFQYPVILCVTLSTVF 125 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-----AFMLIGIMVMRLMINF 185 + + N L L + + + + L+I F Sbjct: 126 ILLRLFLLPKFDLLFNQLQKQDIATTSLLYFLLEKLPLLIGVIMFISALLITF 178 >gi|227889670|ref|ZP_04007475.1| type II secretory pathway/competence component [Lactobacillus johnsonii ATCC 33200] gi|227849813|gb|EEJ59899.1| type II secretory pathway/competence component [Lactobacillus johnsonii ATCC 33200] Length = 333 Score = 34.7 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 64/185 (34%), Gaps = 15/185 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + +KK D +D + +++ G ++ ++ ++ +R Sbjct: 4 LSNFLKKDKLNSADQL-IFIDYLRQALINGYSLNASLRLL--------PKIWRGNSRQLL 54 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 E S++ + S + + GNL L +S+++R + K++ Sbjct: 55 YVNQRVEEGSQLGDVLQEVGFSSTLAAQINLAIIDGNLLSCLDQMSKLIRLKNKQLKKLK 114 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ +L C+ T + ND +++LG +++ + + Sbjct: 115 GELAYPALLVGMMVTLLICMQTFLKTEMSD------NDWTSNVMLGGLVLLVIVAVFFIS 168 Query: 181 LMINF 185 I Sbjct: 169 KTIRL 173 >gi|15618726|ref|NP_225012.1| general secretion protein F [Chlamydophila pneumoniae CWL029] gi|15836350|ref|NP_300874.1| general secretion protein F [Chlamydophila pneumoniae J138] gi|16752223|ref|NP_445591.1| general secretion pathway protein F [Chlamydophila pneumoniae AR39] gi|33242177|ref|NP_877118.1| XcpS [Chlamydophila pneumoniae TW-183] gi|4377129|gb|AAD18955.1| General Secretion Protein F [Chlamydophila pneumoniae CWL029] gi|7189967|gb|AAF38827.1| general secretion pathway protein F [Chlamydophila pneumoniae AR39] gi|8979191|dbj|BAA99025.1| general secretion protein F [Chlamydophila pneumoniae J138] gi|33236688|gb|AAP98775.1| XcpS [Chlamydophila pneumoniae TW-183] Length = 391 Score = 34.7 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 26/197 (13%), Positives = 64/197 (32%), Gaps = 20/197 (10%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ- 59 ++ + +R + + ++ +R+GLP+ +++ + Q + Sbjct: 42 IREVALRRMSIKSTELIVFTKQLLLLLRSGLPLYESLVSLRDQYHEQKMGLLLTSFMETL 101 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SLS++++ F + GNL L N+ +L +R + K+ Sbjct: 102 RSGGSLSQAMAAHPNIFDH-----FYCSGVAAGESVGNLEGCLQNIIVVLEERAQITKKM 156 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML--------------L 165 ++ V + + ++ L Sbjct: 157 VGALSYPCVLLVFSFAVMLFFLLGVIPSLKETFENMEVKGLTKIVFGVSDCLSAYRYLFL 216 Query: 166 GVAAAFMLIGIMVMRLM 182 G A+A + +GI++ + Sbjct: 217 GFASALITVGILMRHRI 233 >gi|167032606|ref|YP_001667837.1| Mg2 transporter protein CorA family protein [Pseudomonas putida GB-1] gi|166859094|gb|ABY97501.1| Mg2 transporter protein CorA family protein [Pseudomonas putida GB-1] Length = 331 Score = 34.7 bits (78), Expect = 6.4, Method: Composition-based stats. Identities = 15/142 (10%), Positives = 37/142 (26%), Gaps = 5/142 (3%) Query: 45 SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALA- 103 ++ RR + E +++ R + + + E L Sbjct: 188 QGSLQQIRRRAAGLRRFLAPQREIYAQLSRSKWSWFADADADYWNELNNSLIRYLEELEL 247 Query: 104 ---NLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 + +L +++ +M + LP T + + G + N Sbjct: 248 TRERAALVLESEDRRRSERMNRTMY-RFGIITCIFLPMSFITGLLGINVGGIPGADNPLG 306 Query: 161 GHMLLGVAAAFMLIGIMVMRLM 182 V + + R + Sbjct: 307 FLFACIVVLGLAVGQWWLFRRL 328 >gi|46907572|ref|YP_013961.1| general secretion pathway protein F [Listeria monocytogenes serotype 4b str. F2365] gi|47093624|ref|ZP_00231381.1| comG operon protein 2 [Listeria monocytogenes str. 4b H7858] gi|226223947|ref|YP_002758054.1| comG operon protein 2 (ComGB) [Listeria monocytogenes Clip81459] gi|254824595|ref|ZP_05229596.1| general secretion pathway protein F [Listeria monocytogenes FSL J1-194] gi|254852605|ref|ZP_05241953.1| general secretion pathway protein F [Listeria monocytogenes FSL R2-503] gi|254932339|ref|ZP_05265698.1| general secretion pathway protein F [Listeria monocytogenes HPB2262] gi|254992319|ref|ZP_05274509.1| comG operon protein 2 (ComGB) [Listeria monocytogenes FSL J2-064] gi|255520220|ref|ZP_05387457.1| comG operon protein 2 (ComGB) [Listeria monocytogenes FSL J1-175] gi|300765414|ref|ZP_07075396.1| hypothetical protein LMHG_12545 [Listeria monocytogenes FSL N1-017] gi|46880840|gb|AAT04138.1| general secretion pathway protein F [Listeria monocytogenes serotype 4b str. F2365] gi|47018000|gb|EAL08776.1| comG operon protein 2 [Listeria monocytogenes str. 4b H7858] gi|225876409|emb|CAS05118.1| Putative comG operon protein 2 (ComGB) [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605919|gb|EEW18527.1| general secretion pathway protein F [Listeria monocytogenes FSL R2-503] gi|293583895|gb|EFF95927.1| general secretion pathway protein F [Listeria monocytogenes HPB2262] gi|293593833|gb|EFG01594.1| general secretion pathway protein F [Listeria monocytogenes FSL J1-194] gi|300513851|gb|EFK40916.1| hypothetical protein LMHG_12545 [Listeria monocytogenes FSL N1-017] gi|332311787|gb|EGJ24882.1| General secretion pathway protein [Listeria monocytogenes str. Scott A] Length = 343 Score = 34.7 bits (78), Expect = 6.4, Method: Composition-based stats. Identities = 14/128 (10%), Positives = 41/128 (32%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + +++GL ++ + + + S R + +L + +S + Sbjct: 215 RELGYLLKSGLSITHIMHLFAQEESPAFFQAIAR-----QILPTLEQGLSLTKALEKMPI 269 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 I++ + GNL+E + + K + ++ I + Sbjct: 270 FERELYYIAIHGEKNGNLAEEFLFYYNLCHQKSLQKTEKLFSFIQPIVFIVIGILIVSIY 329 Query: 141 STLVYFTS 148 +++Y Sbjct: 330 LSILYPMF 337 >gi|313200814|ref|YP_004039472.1| type II secretion system protein [Methylovorus sp. MP688] gi|312440130|gb|ADQ84236.1| type II secretion system protein [Methylovorus sp. MP688] Length = 395 Score = 34.7 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 45/145 (31%), Gaps = 8/145 (5%) Query: 35 DAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ 93 +A+ + + VR R + + G LS+++ P S+ Sbjct: 78 EAMEALSEKEQRPQVRDTLRATLRLLNEGQPLSQAMEASPEAFPP-----LYVAALRASE 132 Query: 94 LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153 G + EAL + +K KV + S+ + G + + V Sbjct: 133 KTGGMPEALQRYIAYQSQVEEVKKKVISASIYPVMLIVVGGLVVMFLMGFVVPRFAHIYE 192 Query: 154 VLINDPRG--HMLLGVAAAFMLIGI 176 + D +LL + G+ Sbjct: 193 DMNGDMPFMSQLLLALGGFIETHGM 217 >gi|229129521|ref|ZP_04258492.1| ComG operon protein 2 [Bacillus cereus BDRD-Cer4] gi|228654126|gb|EEL09993.1| ComG operon protein 2 [Bacillus cereus BDRD-Cer4] Length = 330 Score = 34.7 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 60/174 (34%), Gaps = 20/174 (11%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L + + G + A+ + Q + + +R+IE G SL +S ++ + + Sbjct: 1 MLKRLGELLEKGYSLLQALEFLQFQLPVEKKVQLQRMIEGLKDGKSLHDSFHQLKFHQDM 60 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 F++ + G++S AL S +L + + + + + + + F Sbjct: 61 LSYLFYA-------EQHGDISFALQQGSALLYKKDKYRRDMMKIMQYPMFLMFFLLIMLF 113 Query: 139 CVSTLVYFTSPGYMNVLINDPRGH-------------MLLGVAAAFMLIGIMVM 179 ++ + ++ ++L ++ GI+ M Sbjct: 114 IFKLILLPQVEMVYSSFGSNTPLLTEQILSAIKLLPYIILTAILTVIIGGILYM 167 >gi|222823428|ref|YP_002575002.1| type II protein secretion system F protein CtsF [Campylobacter lari RM2100] gi|222538650|gb|ACM63751.1| putative type II protein secretion system F protein CtsF [Campylobacter lari RM2100] Length = 321 Score = 34.7 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 11/129 (8%), Positives = 35/129 (27%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 I ++AG+ + A + + + + S + + + Sbjct: 191 FFLIFSYLLKAGVDIKRAFDLACEGIENQFFK-----NKMFIIKTSFESGLDLDQAFFKI 245 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + F + + L E+ L+ +K + +E + ++ + Sbjct: 246 KLFEPFVIRMLKLALKSSKLDESTYELALFYEHKKENYTQRLLSVLEPLMTIFMASLILV 305 Query: 139 CVSTLVYFT 147 + Sbjct: 306 LALGVFLPM 314 >gi|29653512|ref|NP_819204.1| type 4 pili biogenesis protein (plasma membrane protein) [Coxiella burnetii RSA 493] gi|29540774|gb|AAO89718.1| type 4 pili biogenesis protein (plasma membrane protein) [Coxiella burnetii RSA 493] Length = 351 Score = 34.7 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 17/131 (12%), Positives = 46/131 (35%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + ++ AG+P++ A+ + +R ++ G+S S +I R + Sbjct: 221 WIKVLATLSAAGIPLNKALITANHIIRNHALRQALDKLPCWISEGVSFSTAIERCGFFPH 280 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + I + G L+E L ++ I ++ + + + +E + + Sbjct: 281 Q------AIQIIHIGENSGTLNEMLNKVAVIYQEEIDERYDRLSECLEPAIMIVLALLIG 334 Query: 138 FCVSTLVYFTS 148 + + Sbjct: 335 GLIIAMYLPVF 345 >gi|296273939|ref|YP_003656570.1| Type II secretion system F domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296098113|gb|ADG94063.1| Type II secretion system F domain protein [Arcobacter nitrofigilis DSM 7299] Length = 398 Score = 34.7 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 16/161 (9%), Positives = 52/161 (32%), Gaps = 7/161 (4%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 + + + + + + DA+ ++ + ++ + L +I Sbjct: 52 KASEEQIIELFIQLSIMLDSNILLIDAIKILQKSIKNSH---LSDILNSMESALQNGRAI 108 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + ++++ + GN+ +A LS +L+ R K ++ Sbjct: 109 YK-ALEKYEKDLNPIIIPFFKIFEKNGNIKAVIAALSTLLKIRLKNKKDLKNSLRYPI-- 165 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 ++ + +S + F P + N+ + + + Sbjct: 166 -IVMVTFILALSMIFIFVVPKFENIFLQYHMQLPISTILLL 205 >gi|163942002|ref|YP_001646886.1| type II secretion system protein [Bacillus weihenstephanensis KBAB4] gi|163864199|gb|ABY45258.1| type II secretion system protein [Bacillus weihenstephanensis KBAB4] Length = 345 Score = 34.3 bits (77), Expect = 6.9, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 43/128 (33%), Gaps = 7/128 (5%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + + GL V +A+ +++ Q+ + E R+ G L I + Sbjct: 218 QLSGLLHGGLSVHEALTIMMKQNYHPFFQYEADRIERQLIAGEPLQSIIDKSG------Y 271 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + I Q GNL+ L + S ++ ++ K K ++ + + Sbjct: 272 YEKELSYIITHGQANGNLANELGDYSELIIEKVEQKIKRMLFVIQPILFTCLGVIVILMY 331 Query: 141 STLVYFTS 148 ++ Sbjct: 332 LAMIMPMF 339 Score = 34.3 bits (77), Expect = 8.8, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 62/184 (33%), Gaps = 11/184 (5%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR D + + G + A+ + Q + + +R+IE G SL Sbjct: 5 KRKWSLSDQ-ALLCKRLSDLLEKGYSLLQALEFLQLQLPLGKKLQLQRMIEGLKNGQSLH 63 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 S ++ ++ G++S AL S +L + + + + Sbjct: 64 ASFHQL-------MFHSEMLSYLFYAERHGDISFALQQGSVLLYKKDKYRKDMMKVMRYP 116 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLIND---PRGHMLLGVAAAFMLIGIMVMRLMI 183 ++ + + + ++ + L + +L+ + I ++V+ ++ Sbjct: 117 MFLSFFLMIMLSVFNLILLPQFEMMYSSLRSTAPPLTEQILVAIKLLPYFIYMIVLIVIT 176 Query: 184 NFDV 187 F + Sbjct: 177 GFSI 180 >gi|194858469|ref|XP_001969185.1| GG25279 [Drosophila erecta] gi|190661052|gb|EDV58244.1| GG25279 [Drosophila erecta] Length = 2175 Score = 34.3 bits (77), Expect = 6.9, Method: Composition-based stats. Identities = 14/106 (13%), Positives = 29/106 (27%), Gaps = 5/106 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + A +VR++ AG+ + I S + + S + + Sbjct: 1214 ENRMRTAAHQMVRNLAAGMAMITGKDEIARAISQNLHKALLSAL-----NGMPSMAEIQA 1268 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 E ++ +E LS RK + + Sbjct: 1269 AAMQLASENVELVCAFIQKTSAEKAAAEIDRRLSTDFETRKIAREE 1314 >gi|294812767|ref|ZP_06771410.1| Putative sodium:solute symporter [Streptomyces clavuligerus ATCC 27064] gi|294325366|gb|EFG07009.1| Putative sodium:solute symporter [Streptomyces clavuligerus ATCC 27064] Length = 577 Score = 34.3 bits (77), Expect = 7.0, Method: Composition-based stats. Identities = 9/77 (11%), Positives = 24/77 (31%), Gaps = 1/77 (1%) Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY-MNVLINDPRGHMLLGVAAA 170 + ++K + L + W+ + T G + G M++ + Sbjct: 61 MRRARSKSEFLVAGRRLGPWMYSGTMAAIVLGGASTIGGVGLGYKYGLSGGWMVVTIGLG 120 Query: 171 FMLIGIMVMRLMINFDV 187 + + I+ + V Sbjct: 121 LLALSILFSARIARLKV 137 >gi|229551836|ref|ZP_04440561.1| type II secretory pathway/competence component protein [Lactobacillus rhamnosus LMS2-1] gi|258539237|ref|YP_003173736.1| type II secretory pathway/competence component [Lactobacillus rhamnosus Lc 705] gi|229314780|gb|EEN80753.1| type II secretory pathway/competence component protein [Lactobacillus rhamnosus LMS2-1] gi|257150913|emb|CAR89885.1| Type II secretory pathway/competence component [Lactobacillus rhamnosus Lc 705] Length = 317 Score = 34.3 bits (77), Expect = 7.0, Method: Composition-based stats. Identities = 22/159 (13%), Positives = 55/159 (34%), Gaps = 8/159 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 ++AG +SD A + ++ + G++ S++++R Sbjct: 11 FCRQSAALMKAGFNLSDVFAYLQVSLPKHTA-IWQGIENELANGIAFSDAVAR------- 62 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 Q+++ +Q+ G+L++AL + L R + ++ L + ++ L Sbjct: 63 QDLAPILFQQLQLAQVHGDLAKALTIAADYLHLRVRNRQRIVQLLVYPCLLLAMLVVLQI 122 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 V V + L+ + + F+ Sbjct: 123 VVVFGVLPALSLPQSNLVALQLIGLGVVTVIGFLGYCYW 161 >gi|195119672|ref|XP_002004353.1| GI19666 [Drosophila mojavensis] gi|193909421|gb|EDW08288.1| GI19666 [Drosophila mojavensis] Length = 2181 Score = 34.3 bits (77), Expect = 7.0, Method: Composition-based stats. Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 5/106 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + A +VR++ AG+ + I S + F + + + ++ Sbjct: 1203 ENRMRTAAHQMVRNLAAGMAMITGKDEIARAISQNLHKAFMAALTGVPSMSDIQAASMQL 1262 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 E ++ + E LS RK + + Sbjct: 1263 AN-----ENVELVCAFIQKTSAEKSALEIDRRLSTDFETRKIAREE 1303 >gi|256374433|ref|YP_003098093.1| type II secretion system protein [Actinosynnema mirum DSM 43827] gi|255918736|gb|ACU34247.1| type II secretion system protein [Actinosynnema mirum DSM 43827] Length = 185 Score = 34.3 bits (77), Expect = 7.1, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 51/142 (35%), Gaps = 4/142 (2%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D+ ++R+GLPV A+ ++ + +V + LG + + Sbjct: 45 ALAETWDLFAAALRSGLPVPSALHAVLPGTPPGPAERLGQVRDLLALGADPATAWDPA-- 102 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII- 133 + + + ++ G L++ +A+L+ LR A+ +A + + Sbjct: 103 -LDHPATAPLARSARRTARSGAALADQVADLAARLRASAADDAESRAQRAAVLVAGPLSL 161 Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155 LP + V G + L Sbjct: 162 CFLPAFLCLGVAPVLIGIASGL 183 >gi|215435046|gb|ACJ66890.1| hypothetical protein Bsb_10 [Bacillus subtilis] Length = 255 Score = 34.3 bits (77), Expect = 7.2, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 62/181 (34%), Gaps = 3/181 (1%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 ++ KR L D + +++G + A+ S+ ++++ RV+++ Sbjct: 65 RNKKMKREIALLKDLNTYATTMTFFLQSGKNLRAALEATRPSLSERLQNDIERVLKSLDE 124 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 SLS +S +Y + F+ V+ + GG+ S ++ + ++ Sbjct: 125 D-SLSPDMSVFDKYKFSP-IKAFNDVLIISRDEGGDKSTMFNRVNENINFAITKHDEMVR 182 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML-LGVAAAFMLIGIMVMR 180 + I + ++ S + + + + + F + I + Sbjct: 183 GKKIVAKQIYFIIGAMLSIPVMLSCLSTFLSTQMYDQFLFYPISIVGVIIFFAVMITWLF 242 Query: 181 L 181 Sbjct: 243 K 243 >gi|327382041|gb|AEA53517.1| ComG operon protein 1 [Lactobacillus casei LC2W] gi|327385195|gb|AEA56669.1| ComG operon protein 1 [Lactobacillus casei BD-II] Length = 317 Score = 34.3 bits (77), Expect = 7.2, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 53/161 (32%), Gaps = 12/161 (7%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG + D A + S R + R+ G+ L + Sbjct: 11 FCRQSAALIAAGFSLPDVFAYL-RVSLPKYRPIWERIETDLASGIGL-------PEAVGH 62 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 Q ++ +Q+ G+L++ALA L R + ++ L + ++ +L Sbjct: 63 QALAPILFQQLQLAQVHGDLAKALAVAGDYLGLRVRNRQRIGQLLIYPLVLLGMLVTLQV 122 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V V + L++ L+ + ++ + Sbjct: 123 VVVFGVLPALALPQSHLVHT----QLMTMGGGLAAGLLIWL 159 >gi|90407997|ref|ZP_01216170.1| putative iron permease [Psychromonas sp. CNPT3] gi|90310935|gb|EAS39047.1| putative iron permease [Psychromonas sp. CNPT3] Length = 627 Score = 34.3 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 24/178 (13%), Positives = 59/178 (33%), Gaps = 25/178 (14%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 I R A F + ++ IV +RAG V A+ E L + Sbjct: 307 KIGARDATFKAELESSFTKIVSLIRAGKSV-RAIED-----------------EIDKLEI 348 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 +L+ ++ + + F +++ + + + A ++ +++++ K + S Sbjct: 349 NLNIAVQMLSKENQTPWSLFLYSLMIIVREGLEAMLVVAAIIAYLIKNKHEDKLTIVKNS 408 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + A ++ +L F + G +L A + ++ Sbjct: 409 VVVALVASVVTALIFKFILDNSGAKQEILE-------GVTMLLAALVLFFVSYWLIAK 459 >gi|161830293|ref|YP_001596123.1| type IV-A pilus assembly protein PilC [Coxiella burnetii RSA 331] gi|161762160|gb|ABX77802.1| type IV-A pilus assembly protein PilC [Coxiella burnetii RSA 331] Length = 351 Score = 34.3 bits (77), Expect = 7.4, Method: Composition-based stats. Identities = 16/131 (12%), Positives = 46/131 (35%), Gaps = 7/131 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + ++ AG+P++ A+ + +R ++ G+S S +I R + Sbjct: 221 WIKVLATLSAAGIPLNKALITANHIIRNHALRQALDKLPCWISEGVSFSTAIERCGFFSH 280 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L+E L ++ I ++ + + + +E + + Sbjct: 281 Q------AIQLIHIGENSGTLNEMLNKVAVIYQEEIDERYDRLSECLEPAIMIVLALLIG 334 Query: 138 FCVSTLVYFTS 148 + + Sbjct: 335 GLIIAMYLPVF 345 >gi|83590101|ref|YP_430110.1| O-antigen polymerase [Moorella thermoacetica ATCC 39073] gi|83573015|gb|ABC19567.1| O-antigen polymerase [Moorella thermoacetica ATCC 39073] Length = 832 Score = 34.3 bits (77), Expect = 7.4, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 1/67 (1%) Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 R+ + +V + + +L F L+ F P + L L +AA Sbjct: 48 RRRTEDQVAEETFWPDKGNRTLFALAFSGLILLLF-YPPFFRGLFFPVEQRWTLILAAVI 106 Query: 172 MLIGIMV 178 + Sbjct: 107 FFFAYLW 113 >gi|227875718|ref|ZP_03993846.1| possible cell divisionFtsK/SpoIIIE [Mobiluncus mulieris ATCC 35243] gi|269976733|ref|ZP_06183709.1| FHA domain-containing protein [Mobiluncus mulieris 28-1] gi|227843660|gb|EEJ53841.1| possible cell divisionFtsK/SpoIIIE [Mobiluncus mulieris ATCC 35243] gi|269935098|gb|EEZ91656.1| FHA domain-containing protein [Mobiluncus mulieris 28-1] Length = 1124 Score = 34.3 bits (77), Expect = 7.5, Method: Composition-based stats. Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 1/50 (2%) Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV-MRLMINF 185 P + +++ P + + G +L + + + MR + N Sbjct: 123 PGSLRWMLFMFLPLVFMLGLGAFIGWRVLVIFVLLAGVALWWFMRRLSNI 172 >gi|283797115|ref|ZP_06346268.1| conserved hypothetical protein [Clostridium sp. M62/1] gi|291075532|gb|EFE12896.1| conserved hypothetical protein [Clostridium sp. M62/1] Length = 290 Score = 34.3 bits (77), Expect = 7.5, Method: Composition-based stats. Identities = 13/144 (9%), Positives = 46/144 (31%), Gaps = 2/144 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +K + + + P + I + +++ V + + + E ++ Sbjct: 137 KLKAKREEIEGELPRMVATIEQELKSSRNVIGMLERFKTNAGPALTGELDILLADMRS-S 195 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + +++R + +S + + ++ L+ + + + K +A Sbjct: 196 NYEAALTRFEARLNSPMLSDVVRGLIGVLRGDDSVV-YFQMLAHDFKQIELQRLKAEAQK 254 Query: 124 MEAKASAWIIGSLPFCVSTLVYFT 147 + K + L + T + Sbjct: 255 IPPKIRVFSFAMLMCFLLTYLAII 278 >gi|116494527|ref|YP_806261.1| Type II secretory pathway/competence component [Lactobacillus casei ATCC 334] gi|116104677|gb|ABJ69819.1| Type II secretory pathway/competence component [Lactobacillus casei ATCC 334] Length = 317 Score = 34.3 bits (77), Expect = 7.5, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 53/161 (32%), Gaps = 12/161 (7%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG + D A + S R + R+ G+ L + Sbjct: 11 FCRQSAALIAAGFSLPDVFAYL-RVSLPKYRPIWERIETDLASGIGL-------PEAVGH 62 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 Q ++ +Q+ G+L++ALA L R + ++ L + ++ +L Sbjct: 63 QALAPILFQQLQLAQVHGDLAKALAVAGDYLGLRVRNRQRIGQLLIYPLVLLGMLVTLQV 122 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V V + L++ L+ + ++ + Sbjct: 123 VVVFGVLPALALPQSHLVHT----QLMTMGGGLAAGLLIWL 159 >gi|227356406|ref|ZP_03840794.1| type IV pilin biogenesis protein [Proteus mirabilis ATCC 29906] gi|227163516|gb|EEI48437.1| type IV pilin biogenesis protein [Proteus mirabilis ATCC 29906] Length = 399 Score = 34.3 bits (77), Expect = 7.7, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 39/134 (29%), Gaps = 5/134 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 I+ + +AGLP+ + +I Q S ++R + ++ +S+S + Sbjct: 263 HQLHIIFQIMTITQQAGLPLLQGLKIITEQL---THSLYQRALTDMIAHITQGKSLSSFM 319 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R ++ G L L+ + + +E I Sbjct: 320 R--HNPLFPPICYQFISSAENSGQLQFFCQQLTHWFYHQLEERLDSVKTWLEPILMTLIA 377 Query: 134 GSLPFCVSTLVYFT 147 + + Sbjct: 378 LITGTLIIAMYLPV 391 >gi|194017667|ref|ZP_03056277.1| ComG operon protein 2 [Bacillus pumilus ATCC 7061] gi|194010567|gb|EDW20139.1| ComG operon protein 2 [Bacillus pumilus ATCC 7061] Length = 346 Score = 34.3 bits (77), Expect = 7.7, Method: Composition-based stats. Identities = 18/139 (12%), Positives = 48/139 (34%), Gaps = 7/139 (5%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 L + + ++AG + +A+ ++ Q S+ + + I+ G + R+ Sbjct: 15 AECLSKLAQLIQAGYTLIEALTMLNIQLSNKQQQQLAPGIQWLLEGEPFYVVLERL---- 70 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 I S+ G+L++AL +R L + + + + + + Sbjct: 71 ---HFQREVIAILSFSEKHGSLAKALEQSARFLEKKIKQVDTFKRILRYPIFLIFTVLIV 127 Query: 137 PFCVSTLVYFTSPGYMNVL 155 V ++ + + Sbjct: 128 LILVQQMIIPQFSLLYSSM 146 >gi|296420228|ref|XP_002839677.1| hypothetical protein [Tuber melanosporum Mel28] gi|295635871|emb|CAZ83868.1| unnamed protein product [Tuber melanosporum] Length = 534 Score = 34.3 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 20/179 (11%), Positives = 52/179 (29%), Gaps = 21/179 (11%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 + F L +++ + G +V S + + R++ H + +I Sbjct: 258 NAIRNSFSFFL-LLIVCMGYG---------VVKPSLGAMMK-WVRILALAHFLFGMVYAI 306 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + + ++ + + L L +L ++D + K V+ L + Sbjct: 307 ASLTITPDNAGPLVMLVILPLAATLTAFYIWTLNSLKLTMKDLLDRKQNVKLLMFKRLWW 366 Query: 130 AWIIGSLPFCVSTLVYFT------SPGYMNVLIND----PRGHMLLGVAAAFMLIGIMV 178 + + + SP ++ G + L +I + Sbjct: 367 VLVGSIMVIFAFFFLNSFTFTRHGSPDFVPTHWKTRWFVLDGWLNLVYLVDLSVIAYLW 425 >gi|294676508|ref|YP_003577123.1| type I restriction-modification system RcaSBIP subunit R [Rhodobacter capsulatus SB 1003] gi|294475328|gb|ADE84716.1| type I restriction-modification system RcaSBIP, R subunit [Rhodobacter capsulatus SB 1003] Length = 1135 Score = 34.3 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 16/114 (14%), Positives = 32/114 (28%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + LD VR+ + A+ ++V + + R E R++ I R Sbjct: 971 DFLDAFATFVRSNVNTIAALKIVVQRPQELTREELRQLRLELDAAGFTDSKIRRAWADAN 1030 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 E++ Q+ LG L + + + Sbjct: 1031 NVEIAASIIGYIRQAALGDPLVPYSDRVRHAVDTILRQRQWTDVQRKWIDRIGR 1084 >gi|167772242|ref|ZP_02444295.1| hypothetical protein ANACOL_03617 [Anaerotruncus colihominis DSM 17241] gi|167665345|gb|EDS09475.1| hypothetical protein ANACOL_03617 [Anaerotruncus colihominis DSM 17241] Length = 292 Score = 34.3 bits (77), Expect = 8.3, Method: Composition-based stats. Identities = 18/150 (12%), Positives = 47/150 (31%), Gaps = 2/150 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 + + + P + I + + V + Q + S V+ S Sbjct: 143 KRDEIEAELPRFVATITQELAVSRDVLSMIEH-YKQHAGETFSAELDVLTADMRSGSYEA 201 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +++R +S + + + LS ++ + + K +A+ + K Sbjct: 202 ALTRFEARFNSPLLSDIVRGLIGVLRGDNGI-NYFQMLSHDMKQLELQRLKAKAMKIPPK 260 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 A+ + L + T + ++ L Sbjct: 261 IRAFSLTLLMCFLGTYLAIIIYEIIHSLGG 290 >gi|302787178|ref|XP_002975359.1| hypothetical protein SELMODRAFT_103269 [Selaginella moellendorffii] gi|300156933|gb|EFJ23560.1| hypothetical protein SELMODRAFT_103269 [Selaginella moellendorffii] Length = 786 Score = 34.3 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 8/108 (7%), Positives = 28/108 (25%) Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 E+ ++ ++ V + + + +V + L Sbjct: 225 ELWKWTVMVLVALSGRLLSGWIIHVAVFFIERNFLWRKRVLYFVYGLRKGVQTALWLTLA 284 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + + P N+ + V ++ + + ++ V Sbjct: 285 LVAWLLLFDPKVERSTKNNRALLYVTKVLICLLIAAFVWLAKLLFVKV 332 >gi|260654170|ref|ZP_05859660.1| type II secretion pathway protein XcpS [Jonquetella anthropi E3_33 E1] gi|260631155|gb|EEX49349.1| type II secretion pathway protein XcpS [Jonquetella anthropi E3_33 E1] Length = 342 Score = 34.3 bits (77), Expect = 8.5, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 57/174 (32%), Gaps = 22/174 (12%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L + + + G+PV A+ + + R+ + G S ++++ R Sbjct: 15 FLQALSQFLSCGVPVDQALKDL-----PVGGALASRLRRSLLSGFSFADALER------E 63 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 E + + + G L +AL + + R+ +++ + S+ + G + Sbjct: 64 NEFDPVTVALVRAGEAHGALVQALNQAADVRCRRQKLRSAAVSASVYPAFVLALAGVVTA 123 Query: 139 CVSTLVYFTS-----------PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + +V P L++ + +L + ++ Sbjct: 124 VMGGVVLPRFRQAFERLGVQLPQATRFLMSVGPAFAVALPVVILLLGTVALLAR 177 >gi|229135064|ref|ZP_04263869.1| ComG operon protein 2 [Bacillus cereus BDRD-ST196] gi|228648449|gb|EEL04479.1| ComG operon protein 2 [Bacillus cereus BDRD-ST196] Length = 315 Score = 34.3 bits (77), Expect = 8.5, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 42/128 (32%), Gaps = 7/128 (5%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + + GL V +A+ +++ Q + E R+ G L I + Sbjct: 188 QLSGLLHGGLSVHEALTIMMKQKYHPFFQYEADRIERQLIAGEPLQSIIDKSG------Y 241 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + I Q GNL+ L + S ++ ++ K K ++ + + Sbjct: 242 YEKELSYIITHGQANGNLANELGDYSELIIEKVEQKIKRMLFMIQPILFTCLGVIVILMY 301 Query: 141 STLVYFTS 148 ++ Sbjct: 302 LAMIMPMF 309 >gi|328475064|gb|EGF45852.1| comG operon protein 2 (ComGB) [Listeria monocytogenes 220] Length = 314 Score = 34.3 bits (77), Expect = 8.5, Method: Composition-based stats. Identities = 14/128 (10%), Positives = 41/128 (32%), Gaps = 5/128 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + +++GL ++ + + + S R + +L + +S + Sbjct: 186 RELGYLLKSGLSITHIMHLFAQEESPAFFQAIAR-----QILPTLEQGLSLTKALEKMPI 240 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 I++ + GNL+E + + K + ++ I + Sbjct: 241 FERELYYIAIHGEKNGNLAEEFLFYYNLCHQKSLQKTEKLFSFIQPIVFIVIGILIVSIY 300 Query: 141 STLVYFTS 148 +++Y Sbjct: 301 LSILYPMF 308 >gi|253998736|ref|YP_003050799.1| type II secretion system protein [Methylovorus sp. SIP3-4] gi|253985415|gb|ACT50272.1| type II secretion system protein [Methylovorus sp. SIP3-4] Length = 395 Score = 34.3 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 45/145 (31%), Gaps = 8/145 (5%) Query: 35 DAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ 93 +A+ + + VR R + + G LS+++ P S+ Sbjct: 78 EAMEALSEKEQRPQVRDTLRATLRLLNEGQPLSQAMEASPEAFPP-----LYVAALRASE 132 Query: 94 LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153 G + EAL + +K KV + S+ + G + + V Sbjct: 133 KTGGMPEALQRYIAYQSQVEEVKKKVISASIYPVLLIVVGGLVVMFLMGFVVPRFAHIYE 192 Query: 154 VLINDPRG--HMLLGVAAAFMLIGI 176 + D +LL + G+ Sbjct: 193 DMNGDMPFMSQLLLALGGFIETHGM 217 >gi|306818993|ref|ZP_07452710.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] gi|304648186|gb|EFM45494.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] Length = 1050 Score = 34.3 bits (77), Expect = 8.7, Method: Composition-based stats. Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 1/50 (2%) Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV-MRLMINF 185 P + +++ P + + G +L + + + MR + N Sbjct: 49 PGSLRWMLFMFLPLVFMLGLGVFIGWRVLVIFVLLAGVALWWFMRRLSNI 98 >gi|297537917|ref|YP_003673686.1| Type II secretion system F domain-containing protein [Methylotenera sp. 301] gi|297257264|gb|ADI29109.1| Type II secretion system F domain protein [Methylotenera sp. 301] Length = 393 Score = 34.3 bits (77), Expect = 8.7, Method: Composition-based stats. Identities = 14/144 (9%), Positives = 33/144 (22%), Gaps = 6/144 (4%) Query: 34 SDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ 93 +A+ + + + S+ Sbjct: 75 VEAIETLAEKEQGNQIKHTLDALLQALYQGQ----TFSSALEQQPLIFPVLYIATVRASE 130 Query: 94 LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153 G+L EAL+ + ++ K+ + S+ + G + + V Sbjct: 131 KTGDLPEALSRYVSYEQQLGLVRKKIVSSSIYPILLMAVGGLVILFLLGFVVPKFSRIYE 190 Query: 154 VLINDPRG--HMLLGVAAAFMLIG 175 + +LL G Sbjct: 191 GTGGNLPFLSQVLLAWGLFLESHG 214 >gi|258507983|ref|YP_003170734.1| type II secretory pathway/competence component [Lactobacillus rhamnosus GG] gi|257147910|emb|CAR86883.1| Type II secretory pathway/competence component [Lactobacillus rhamnosus GG] gi|259649310|dbj|BAI41472.1| type II secretion system protein [Lactobacillus rhamnosus GG] Length = 317 Score = 34.3 bits (77), Expect = 8.7, Method: Composition-based stats. Identities = 21/159 (13%), Positives = 54/159 (33%), Gaps = 8/159 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG +SD A + + ++ + G++ S++++R Sbjct: 11 FCRQSAALMTAGFNLSDVFAYLQVSLPKH-AAIWQGIENELANGMAFSDAVAR------- 62 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 Q+++ +Q+ G+L++AL + L R + ++ L + ++ L Sbjct: 63 QDLAPILFQQLQLAQVHGDLAKALTIAADYLHLRVRNRQRIVQLLVYPCLLLAMLVVLQI 122 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 V V + L+ + + + Sbjct: 123 VVVFGVLPALSLPQSNLVALQLIGLGVVTVIGLLGYCYW 161 >gi|254389724|ref|ZP_05004949.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064] gi|197703436|gb|EDY49248.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064] Length = 184 Score = 34.3 bits (77), Expect = 8.7, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 48/154 (31%), Gaps = 1/154 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQ 59 +K + F L ++ A + A+ V + + Sbjct: 30 LKQQAVEAKEDFRHAVKAYLRLVQLERAADAAPTQALKKAAEVGEGWVFAKIRDTITRAE 89 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G+S E + R+ + + E+ + +I++ + G + + L ++ L AK Sbjct: 90 LEGISPWEGLKRLSIELDVPELGAPADIIAIAGEEGAAVGDTLGAQAKSLSGALVTSAKA 149 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153 QA K + + + Y M Sbjct: 150 QANMASEKMVMPVAMLVLIMTVYIGYPALSRIMA 183 >gi|296109771|ref|YP_003616720.1| Type II secretion system F domain protein [Methanocaldococcus infernus ME] gi|295434585|gb|ADG13756.1| Type II secretion system F domain protein [Methanocaldococcus infernus ME] Length = 557 Score = 34.3 bits (77), Expect = 8.8, Method: Composition-based stats. Identities = 21/159 (13%), Positives = 60/159 (37%), Gaps = 2/159 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRA-GLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 + H+ + + + FP L + SV A G + +++ + P+ + +R+ + Sbjct: 315 ISHIEESKVKRKEFVFPEFLRSLGSSVAAKGGGLKESLKYLTLHDFGPLTEDLKRLYKRI 374 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 L + +++ + FS + + + LGG+ A +S+ + ++ K Sbjct: 375 ALSIDSNKAWRYFGFESCSYLIQLFSDMYARCTYLGGDPKIASEIISKNFKRIIQLR-KA 433 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158 + S++ ++ + ++ + N Sbjct: 434 KYQSVQQFVGIVYGLGGGLALALFSSLSVSKAISDIYNS 472 >gi|120555398|ref|YP_959749.1| hypothetical protein Maqu_2487 [Marinobacter aquaeolei VT8] gi|120325247|gb|ABM19562.1| conserved hypothetical protein [Marinobacter aquaeolei VT8] Length = 815 Score = 34.3 bits (77), Expect = 8.8, Method: Composition-based stats. Identities = 9/71 (12%), Positives = 23/71 (32%), Gaps = 1/71 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++R L+ + +V +GLP A+ + + R + Sbjct: 195 KQQRQETLEL-LQQTLNQLKAAVPSGLPSESALDALQKTQENRWLEATRDTQVEKQEQKQ 253 Query: 65 LSESISRMVRY 75 +++ + Y Sbjct: 254 YEQAMLALRNY 264 >gi|307700356|ref|ZP_07637396.1| FtsK/SpoIIIE family protein [Mobiluncus mulieris FB024-16] gi|307614567|gb|EFN93796.1| FtsK/SpoIIIE family protein [Mobiluncus mulieris FB024-16] Length = 1124 Score = 34.3 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 1/50 (2%) Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV-MRLMINF 185 P + +++ P + + G +L + + + MR + N Sbjct: 123 PGSLRWMLFMFLPLVFMLGLGVFIGWRVLVIFVLLAGVALWWFMRRLSNI 172 >gi|170740265|ref|YP_001768920.1| type II secretion system protein [Methylobacterium sp. 4-46] gi|168194539|gb|ACA16486.1| type II secretion system protein [Methylobacterium sp. 4-46] Length = 403 Score = 34.3 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 40/130 (30%), Gaps = 7/130 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + V G+ +S A+ +I G +E RVI G LSE++ + Sbjct: 272 FCRTLAILVGGGVDISTALRLIRGVVRLPGAGAEIDRVIADVRQGQRLSEALGQ------ 325 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G L ++ ++ + + + + Sbjct: 326 RPLFPRHVVQMLRVGEEAGELPDSAERVAAFYEVKLESALGRLIAIVGPAVMVLVSVLIA 385 Query: 138 FCVSTLVYFT 147 + + +++ Sbjct: 386 WLIISVMTAL 395 >gi|320094936|ref|ZP_08026662.1| hypothetical protein HMPREF9005_1274 [Actinomyces sp. oral taxon 178 str. F0338] gi|319978135|gb|EFW09752.1| hypothetical protein HMPREF9005_1274 [Actinomyces sp. oral taxon 178 str. F0338] Length = 165 Score = 33.9 bits (76), Expect = 9.0, Method: Composition-based stats. Identities = 22/158 (13%), Positives = 44/158 (27%), Gaps = 12/158 (7%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++ R + A D+++ +R G + A+A + G R+ LG Sbjct: 19 RLRSRDGAVDEAI--ACDLVLAGLRCGASIPQALAALGG---AVGSDGLVRISRELRLGA 73 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + + + G + L + R + AK A Sbjct: 74 GWAAAWDPAP-----PGTELLREGLEAAWLQGVSPEAQLRRAAAQTRRHRISDAKKAAEE 128 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + A + L L P +++ G Sbjct: 129 LGISLVAPLGALLLPAFVLLG--LVPIVIHMFAGILGG 164 >gi|302762026|ref|XP_002964435.1| hypothetical protein SELMODRAFT_81632 [Selaginella moellendorffii] gi|300168164|gb|EFJ34768.1| hypothetical protein SELMODRAFT_81632 [Selaginella moellendorffii] Length = 786 Score = 33.9 bits (76), Expect = 9.0, Method: Composition-based stats. Identities = 8/108 (7%), Positives = 28/108 (25%) Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 E+ ++ ++ V + + + +V + L Sbjct: 225 ELWKWTVMVLVALSGRLLSGWIIHVAVFFIERNFLWRKRVLYFVYGLRKGVQTALWLTLA 284 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + + P N+ + V ++ + + ++ V Sbjct: 285 LVAWLLLFDPKVERSTKNNRALLYVTKVLICLLIAAFVWLAKLLFVKV 332 >gi|313127312|ref|YP_004037582.1| archaeal flagella assembly protein j [Halogeometricum borinquense DSM 11551] gi|312293677|gb|ADQ68137.1| archaeal flagella assembly protein J [Halogeometricum borinquense DSM 11551] Length = 636 Score = 33.9 bits (76), Expect = 9.2, Method: Composition-based stats. Identities = 24/188 (12%), Positives = 61/188 (32%), Gaps = 12/188 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ 59 + + R A P A+ + + + + R+ + T Sbjct: 137 LGWIAAARRANIDRMLPGAVRYLHVLASGSDGRRTMLRRVADTDAYGETAVSLRKALNTA 196 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTV-ISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + +++E + R+ R P + + + G + + + + +A+ Sbjct: 197 AMTGNINEGLRRVARDTPAENTLAPFLLKFREHADQGSDALRNYLRMESRMLGHQQDRAR 256 Query: 119 VQAL-----SMEAKASAWIIGSLPFCVSTLVYFTSPGY-----MNVLINDPRGHMLLGVA 168 +A E ++ +L + T++ +PG V RG ++ G Sbjct: 257 RRAEGFLELLAEIFIVLLVLPALLVIILTVMSVIAPGLSTTVPTPVGTTTLRGVIVYGSG 316 Query: 169 AAFMLIGI 176 A + +G+ Sbjct: 317 AFIIAVGL 324 >gi|85712517|ref|ZP_01043565.1| Type II secretory pathway, PulF-like [Idiomarina baltica OS145] gi|85693651|gb|EAQ31601.1| Type II secretory pathway, PulF-like [Idiomarina baltica OS145] Length = 348 Score = 33.9 bits (76), Expect = 9.2, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 62/149 (41%), Gaps = 7/149 (4%) Query: 7 KRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLS 64 +R +F + AL+ + + + GLP++ A+ V+ Q+ ++ ++ + + G+S Sbjct: 5 RRYNQFSTTQWYLALNRLEQLITGGLPLALALGVVAKQTHQPALKRHYQYLQHSVQAGIS 64 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L+E++S R + ++ G L + +L + ++++ A V+ Sbjct: 65 LAEALSIEKRR-----ALKAAQAGIAVAEQTGQLPLVMQSLVASWKRQRHISALVKNALR 119 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMN 153 A ++ + T V T + Sbjct: 120 YPVALLFMALIIITVFVTWVLPTIQQLFD 148 >gi|91977297|ref|YP_569956.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris BisB5] gi|91683753|gb|ABE40055.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris BisB5] Length = 633 Score = 33.9 bits (76), Expect = 9.3, Method: Composition-based stats. Identities = 13/136 (9%), Positives = 40/136 (29%), Gaps = 7/136 (5%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 +++ ++R I ++ AGL S+ + ++ Q + R+ + + Sbjct: 153 RYIAEQRKVALRRQ-------IAGTITAGLAPSNTMLLVASQFQNEQRAIDYLKLTDAQV 205 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S + + + F + + + D + + + + Sbjct: 206 GTIEPPSAEALAAFYEDHKAQFRAPEYRKVAFVALTPESIAKWTDVSDADARKLFDERKD 265 Query: 122 LSMEAKASAWIIGSLP 137 + + P Sbjct: 266 KLSTPEKRQVLQIVFP 281 >gi|152978291|ref|YP_001343920.1| type II secretion system protein [Actinobacillus succinogenes 130Z] gi|150840014|gb|ABR73985.1| type II secretion system protein [Actinobacillus succinogenes 130Z] Length = 403 Score = 33.9 bits (76), Expect = 9.3, Method: Composition-based stats. Identities = 14/124 (11%), Positives = 52/124 (41%), Gaps = 6/124 (4%) Query: 31 LPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS 89 +P+ +++ +++ ++ P+ ++++ GL+ S++++R +++ QE + Sbjct: 74 VPLKNSLHILLSNCANIPLYQWLQQLLRDIESGLAFSQTLNRQQKFLTHQE-----CQLI 128 Query: 90 VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 ++ G L++ ++ + ++ K+Q + + I L + + Sbjct: 129 RVGEMTGQLAKVCQQIALSKQQGLALQRKIQKILLYPMMILIISLILTALLLIFIVPQFA 188 Query: 150 GYMN 153 Sbjct: 189 EMYG 192 Score = 33.9 bits (76), Expect = 9.5, Method: Composition-based stats. Identities = 15/134 (11%), Positives = 40/134 (29%), Gaps = 1/134 (0%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAV-IVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + + AG+P+ A+ + SD V +I+ L + Sbjct: 263 LVRFCRSLHLMLHAGVPLHQALLSFLPTDKSDTVIRYDVALIQEVQFMLQGIQKGFAFSA 322 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + + G L L +++ + + + K + + +E I Sbjct: 323 CVGSALFPMQAQQMLQVGERAGKLPLMLQHIADNYQQQLDHKIDLLSQMLEPFLMLIIGS 382 Query: 135 SLPFCVSTLVYFTS 148 + + + Sbjct: 383 IIGLIMLGMYLPIF 396 >gi|326445374|ref|ZP_08220108.1| putative integral membrane protein [Streptomyces clavuligerus ATCC 27064] Length = 299 Score = 33.9 bits (76), Expect = 9.4, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 48/154 (31%), Gaps = 1/154 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQ 59 +K + F L ++ A + A+ V + + Sbjct: 145 LKQQAVEAKEDFRHAVKAYLRLVQLERAADAAPTQALKKAAEVGEGWVFAKIRDTITRAE 204 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G+S E + R+ + + E+ + +I++ + G + + L ++ L AK Sbjct: 205 LEGISPWEGLKRLSIELDVPELGAPADIIAIAGEEGAAVGDTLGAQAKSLSGALVTSAKA 264 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153 QA K + + + Y M Sbjct: 265 QANMASEKMVMPVAMLVLIMTVYIGYPALSRIMA 298 >gi|30022321|ref|NP_833952.1| ComG operon protein 2 [Bacillus cereus ATCC 14579] gi|29897878|gb|AAP11153.1| ComG operon protein 2 [Bacillus cereus ATCC 14579] Length = 345 Score = 33.9 bits (76), Expect = 9.4, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 60/174 (34%), Gaps = 20/174 (11%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L + + G + A+ + Q + + +R+IE G SL +S ++ + + Sbjct: 16 LLKRLGELLEKGYSLLQALEFLQFQLPVEKKVQLQRMIEGLKDGKSLHDSFHQLKFHQDM 75 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 F++ + G++S AL S +L + + + + + + + F Sbjct: 76 LSYLFYA-------EQHGDISFALQQGSALLYKKDKYRRDMMKIMQYPMFLMFFLLIMLF 128 Query: 139 CVSTLVYFTSPGYMNVLINDPRGH-------------MLLGVAAAFMLIGIMVM 179 ++ + ++ ++L ++ GI+ M Sbjct: 129 IFKLILLPQVEMVYSSFGSNTPLLTEQILSAIKLLPYIILTAILTVIIGGILYM 182 >gi|325916236|ref|ZP_08178517.1| type II secretory pathway, component PulF [Xanthomonas vesicatoria ATCC 35937] gi|325537530|gb|EGD09245.1| type II secretory pathway, component PulF [Xanthomonas vesicatoria ATCC 35937] Length = 154 Score = 33.9 bits (76), Expect = 9.5, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + +AG+P+ +A++++ G + + V + + V P Sbjct: 23 FARTTAVTFKAGVPLVEALSIVAGATGNSVYEAAVLRMRDDVSVGYPVNVAMKQVNLFPH 82 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 ++ + G L L ++ N + +E +I + Sbjct: 83 -----MVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVGG 137 Query: 139 CVSTLVYFTS 148 V + Sbjct: 138 MVIGMYLPIF 147 >gi|262044850|ref|ZP_06017893.1| protein transporter HofC [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037819|gb|EEW39047.1| protein transporter HofC [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 247 Score = 33.9 bits (76), Expect = 9.5, Method: Composition-based stats. Identities = 10/90 (11%), Positives = 26/90 (28%), Gaps = 4/90 (4%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + ++A LP+++ ++++ Q S + + Sbjct: 62 ETIRQLASLLQASLPLAEGLSLLAQQQSHAQWQALLEALGRELAQG----VAFSAALAQW 117 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSR 107 Q + +L G L L+ Sbjct: 118 PQAFPPLYLAMISTGELTGKLDICCLQLAN 147 >gi|229013461|ref|ZP_04170598.1| ComG operon protein 2 [Bacillus mycoides DSM 2048] gi|228747873|gb|EEL97739.1| ComG operon protein 2 [Bacillus mycoides DSM 2048] Length = 294 Score = 33.9 bits (76), Expect = 9.5, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 42/128 (32%), Gaps = 7/128 (5%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + + GL V +A+ +++ Q + E R+ G L I + Sbjct: 167 QLSGLLHGGLSVHEALTIMMKQKYHPFFQYEADRIERQLIAGEPLQSIIDKSG------Y 220 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + I Q GNL+ L + S ++ ++ K K ++ + + Sbjct: 221 YEKELSYIITHGQANGNLANELGDYSELIIEKVEQKIKRMLFVIQPILFTCLGVIVILMY 280 Query: 141 STLVYFTS 148 ++ Sbjct: 281 LAMIMPMF 288 >gi|229098713|ref|ZP_04229653.1| ComG operon protein 2 [Bacillus cereus Rock3-29] gi|229117738|ref|ZP_04247107.1| ComG operon protein 2 [Bacillus cereus Rock1-3] gi|228665715|gb|EEL21188.1| ComG operon protein 2 [Bacillus cereus Rock1-3] gi|228684792|gb|EEL38730.1| ComG operon protein 2 [Bacillus cereus Rock3-29] Length = 329 Score = 33.9 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 7/128 (5%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + + GL V +A+ +++ Q + E R+ G SL I++ Sbjct: 202 QLSGLLYGGLSVLEALTIMMEQKYNRFFQYEAARIERQLIAGESLQSIIAKSG------Y 255 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + I Q GNL+ L + S ++ ++ K K + ++ I G + Sbjct: 256 YEKELSYIIRHGQANGNLAVELEDYSDLVIEKMEQKMKRMLVIIQPILFTCIGGIVVLMY 315 Query: 141 STLVYFTS 148 ++ Sbjct: 316 LAMIMPMF 323 >gi|239631876|ref|ZP_04674907.1| type II secretory pathway/competence [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526341|gb|EEQ65342.1| type II secretory pathway/competence [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 307 Score = 33.9 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 53/161 (32%), Gaps = 12/161 (7%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + AG + D A + S R + R+ G+ L + Sbjct: 11 FCRQSAALIAAGFSLPDVFAYL-RVSLPKYRPIWERIETDLASGIGL-------PEAVGH 62 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 Q ++ +Q+ G+L++ALA L R + ++ L + ++ +L Sbjct: 63 QALAPILFQQLQLAQVHGDLAKALAVAGDYLGLRVRNRQRIGQLLIYPLVLLGMLVTLQV 122 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V V + L++ L+ + ++ + Sbjct: 123 VVVFGVLPALALPQSHLVHT----QLMTMGGGLAAGLLIWL 159 >gi|162147676|ref|YP_001602137.1| cobalamin biosynthesis protein cobT [Gluconacetobacter diazotrophicus PAl 5] gi|209542301|ref|YP_002274530.1| cobalt chelatase, pCobT subunit [Gluconacetobacter diazotrophicus PAl 5] gi|161786253|emb|CAP55835.1| putative cobalamin biosynthesis protein cobT [Gluconacetobacter diazotrophicus PAl 5] gi|209529978|gb|ACI49915.1| cobalt chelatase, pCobT subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 633 Score = 33.9 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 2/69 (2%) Query: 9 TAKFLDDFPN--ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 A+ D P AL ++ R G PV +++ + Q + R ++ Sbjct: 147 RAQARDQIPVQVALSLLARERMTGEPVPESMRAMAEQWRAHLGPSALRALDDMAAHQDDQ 206 Query: 67 ESISRMVRY 75 + SR + Sbjct: 207 MAFSRAAKR 215 >gi|317128387|ref|YP_004094669.1| type II secretion system F domain [Bacillus cellulosilyticus DSM 2522] gi|315473335|gb|ADU29938.1| Type II secretion system F domain [Bacillus cellulosilyticus DSM 2522] Length = 340 Score = 33.9 bits (76), Expect = 9.8, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 36/130 (27%), Gaps = 5/130 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + ++ G + +A+ VIV S E + L + S Sbjct: 210 FVTQLSPLLKNGFSLYNALKVIVESSHMKFLQI-----EASAMIGKLLDGYSLQQIIKER 264 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 T + + G L E + +++ K + + I + Sbjct: 265 GIYDERLTAVIYLGESKGKLGEEFERFGNFIYNKQQEKIYKVISVAQPVIVSVIGLIVLV 324 Query: 139 CVSTLVYFTS 148 +++ Sbjct: 325 LFLSIMVPIF 334 >gi|255316491|ref|ZP_05358074.1| hypothetical protein CdifQCD-7_19182 [Clostridium difficile QCD-76w55] Length = 298 Score = 33.9 bits (76), Expect = 9.8, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 70/159 (44%), Gaps = 10/159 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ +K++ K L FP+ ++++ + + + + A+ S V +E+ ++ + Sbjct: 146 LKNAVKEKKLKILSGFPDFINVVQGFLVSDMTLVKAI----ESSIPYVGTEWSKLAQEFV 201 Query: 61 LGL---SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + S + I + + + EV ++I + S+ G N+ E +N ++ + D + Sbjct: 202 IDSKTNSQEKCIEIIYEKIDIFEVRELWSLIKLNSEQGINIKECFSNQAKKITD---LNM 258 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 ++ + + + P + L+ + P +LI Sbjct: 259 ELIHKKINTRQIMATLVQAPLLLLLLIAISLPMVSQMLI 297 >gi|47567800|ref|ZP_00238508.1| competence protein ComGB, putative [Bacillus cereus G9241] gi|47555477|gb|EAL13820.1| competence protein ComGB, putative [Bacillus cereus G9241] Length = 343 Score = 33.9 bits (76), Expect = 9.8, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 44/132 (33%), Gaps = 7/132 (5%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + GL V +A+ +++ Q + E R+ G L I++ Sbjct: 212 YFATQLSGLIHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIAGEPLQSIIAKSG--- 268 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + + Q GNL+ L + S ++ ++ K + ++ I G + Sbjct: 269 ---YYEEELSYVITHGQANGNLAIELGDYSDLIMEKMEQKINRMLVIIQPILFTCIGGIV 325 Query: 137 PFCVSTLVYFTS 148 ++ Sbjct: 326 VLMYLAMIMPMF 337 >gi|303244718|ref|ZP_07331049.1| Type II secretion system F domain protein [Methanothermococcus okinawensis IH1] gi|302484932|gb|EFL47865.1| Type II secretion system F domain protein [Methanothermococcus okinawensis IH1] Length = 384 Score = 33.9 bits (76), Expect = 9.9, Method: Composition-based stats. Identities = 24/176 (13%), Positives = 54/176 (30%), Gaps = 3/176 (1%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIET-QHLGLSLS 66 + ++ ++ S+ +G+ + +A+ I EF+ +I G S Sbjct: 207 RGEIKIQILISILHMISSLNSGMSLQEAMKNISENPEYGIASFEFKNIIYDINRGGYSFK 266 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ES+ R + + + + + G L NL + K + Sbjct: 267 ESLERAKIRTKIPLMKKLYAQLIISAN-KGGAQLLLKNLYNEVIRESISKIDSSKFQISN 325 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + + ++ + G M ++LL A I + M Sbjct: 326 LGNLVFGVGMILPFAGMLLSSLQGGMGFSGIINTTNLLLTKIAPMATIVFTIFIKM 381 >gi|229019463|ref|ZP_04176284.1| ComG operon protein 2 [Bacillus cereus AH1273] gi|229025706|ref|ZP_04182110.1| ComG operon protein 2 [Bacillus cereus AH1272] gi|228735581|gb|EEL86172.1| ComG operon protein 2 [Bacillus cereus AH1272] gi|228741818|gb|EEL91997.1| ComG operon protein 2 [Bacillus cereus AH1273] Length = 315 Score = 33.9 bits (76), Expect = 9.9, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 42/132 (31%), Gaps = 7/132 (5%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + GL V +A+ +++ Q + E R+ G L I + Sbjct: 184 YFSAQLSGLLHGGLSVHEALTIMMKQKYHPFFQYEAARIERQLIAGEPLQSIIDKSG--- 240 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + I Q GNL+ L + S ++ ++ K K ++ + + Sbjct: 241 ---CYEKELSYIITHGQANGNLANELGDYSELIIEKVEQKIKRMLFVIQPILFTCLGLIV 297 Query: 137 PFCVSTLVYFTS 148 ++ Sbjct: 298 ILMYLAMIMPMF 309 >gi|72160530|ref|YP_288187.1| integral membrane protein [Thermobifida fusca YX] gi|71914262|gb|AAZ54164.1| putative integral membrane protein [Thermobifida fusca YX] Length = 246 Score = 33.9 bits (76), Expect = 9.9, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 45/128 (35%), Gaps = 4/128 (3%) Query: 30 GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS 89 G +D VA + P+ + V LG + + + E++ ++ Sbjct: 120 GAHPTDMVAAVAQALGGPLGTALDGVARQLRLGADPARAWQSL---HAPAELAAVGRALA 176 Query: 90 VQSQLGGNLSEALANLSRILRD-RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 S G L++ + + + R + ++ + A + LP V V + Sbjct: 177 RASHTGAPLADVVESHAADCRRTARATALELAHRTGVAVVIPLGVCFLPAFVLLGVVPLA 236 Query: 149 PGYMNVLI 156 G ++ L+ Sbjct: 237 AGLVSGLV 244 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.310 0.129 0.294 Lambda K H 0.267 0.0397 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,021,731,102 Number of Sequences: 14124377 Number of extensions: 28397022 Number of successful extensions: 336700 Number of sequences better than 10.0: 5292 Number of HSP's better than 10.0 without gapping: 3591 Number of HSP's successfully gapped in prelim test: 1701 Number of HSP's that attempted gapping in prelim test: 328744 Number of HSP's gapped (non-prelim): 7416 length of query: 187 length of database: 4,842,793,630 effective HSP length: 131 effective length of query: 56 effective length of database: 2,992,500,243 effective search space: 167580013608 effective search space used: 167580013608 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.9 bits) S2: 77 (34.3 bits)